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Issues list

Fisher test - two sided hypothesis
#45 opened Feb 13, 2023 by JBinkowski
👍 2
Command line interface
#8 opened Apr 24, 2015 by ghost
👍 1
clarify checkUniverseAppropriateness
#3 opened Apr 14, 2015 by nsheff
Negative c entry in table. Bug with userSetsLength; this should not happen.
#11 opened Mar 18, 2016 by enricoferrero
9
Histone marks collections
#12 opened Mar 31, 2016 by enricoferrero
Merging database region-sets
#18 opened Jun 22, 2017 by flopflip
2
Re-order result columns
#26 opened Apr 23, 2018 by nsheff
Different results between LOLAweb interactive server and local R package
#27 opened Apr 25, 2018 by NyxSLY
7
Inclusion of mm10 JASAPR prediction track into LOLA JASPAR
#28 opened Oct 16, 2018 by holgerbrandl
3
cistrome_mm10
#29 opened Feb 19, 2019 by byerscan
2
runLOLA results table for PEP databases
#31 opened Oct 25, 2019 by joseverdezoto
reading zipped bed files
#1 opened Feb 17, 2015 by nsheff
@nsheff
1
Can't load an example regionDB.
#33 opened Oct 27, 2019 by lining-yuan
3
PEP tag system enhancement
#34 opened Oct 28, 2019 by nsheff
testing for enrichment of significant individual cpgs
#36 opened Feb 24, 2020 by lxw391
2
Error if GRangesList has names
#38 opened May 27, 2020 by j-lawson
2
question: how to test two region sets for differential enrichment with buildRestrictedUniverse?
#39 opened Nov 23, 2020 by AdrijaK
2
R package error
#41 opened Apr 8, 2021 by yangyongsan-bio
4
LOLA runLOLA-regionDB to use for tissue-specific TFBS
#42 opened Apr 13, 2021 by shanie-landen
P4 tool not grouping according to the paper!!
#43 opened Jul 28, 2022 by 09Raghu09
Error when trying to load a regionDB
#46 opened May 24, 2023 by HanneHjorthaug
PEP file read caching
#32 opened Oct 25, 2019 by nsheff
2
ProTip! Updated in the last three days: updated:>2025-03-24.