Skip to content

ENH: X5 read/write support of TransformChain #253

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 4 commits into
base: master
Choose a base branch
from

Conversation

oesteban
Copy link
Collaborator

Summary

  • enable writing individual transforms and paths for transform chains in X5 files
  • implement loading of X5 chains
  • verify deduplicated appending and round‑trip behaviour

Testing

  • pytest nitransforms/tests/test_manip.py::test_transformchain_x5_roundtrip -q

https://chatgpt.com/codex/tasks/task_e_687cc0babcd48330b596a86a467e9d82

Copy link

codecov bot commented Jul 20, 2025

Codecov Report

Attention: Patch coverage is 91.66667% with 9 lines in your changes missing coverage. Please review.

Project coverage is 94.79%. Comparing base (fc6fbbd) to head (8ced1ac).

Files with missing lines Patch % Lines
nitransforms/manip.py 90.00% 2 Missing and 3 partials ⚠️
nitransforms/linear.py 81.81% 1 Missing and 1 partial ⚠️
nitransforms/nonlinear.py 90.47% 1 Missing and 1 partial ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master     #253      +/-   ##
==========================================
- Coverage   95.09%   94.79%   -0.31%     
==========================================
  Files          16       16              
  Lines        1918     1977      +59     
  Branches      251      267      +16     
==========================================
+ Hits         1824     1874      +50     
- Misses         75       79       +4     
- Partials       19       24       +5     
Flag Coverage Δ
unittests 94.61% <91.66%> (-0.31%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@oesteban oesteban changed the title Implement TransformChain X5 read/write ENH: X5 read/write support of TransformChain Jul 20, 2025
@oesteban oesteban force-pushed the codex/add-support-for-x5-transform-chains branch 2 times, most recently from 50b2b0a to 6bc2bc1 Compare July 20, 2025 17:46
@oesteban oesteban force-pushed the codex/add-support-for-x5-transform-chains branch 3 times, most recently from f97d8b8 to 8ced1ac Compare July 20, 2025 20:19
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant