[ENH]bedpostx and probtrackx gpu and multithread support #1381
Workflow file for this run
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Tox | |
| on: | |
| push: | |
| branches: [ master, main, 'maint/*' ] | |
| tags: [ '*' ] | |
| pull_request: | |
| branches: [ master, main, 'maint/*' ] | |
| schedule: | |
| # 8am EST / 9am EDT Mondays | |
| - cron: "0 13 * * 1" | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| env: | |
| # Force tox and pytest to use color | |
| FORCE_COLOR: true | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v6 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v7 | |
| - run: uv build | |
| - run: uvx twine check dist/* | |
| - uses: actions/upload-artifact@v7 | |
| with: | |
| name: dist | |
| path: dist/ | |
| test-package: | |
| runs-on: ubuntu-latest | |
| needs: [build] | |
| strategy: | |
| matrix: | |
| package: ["wheel", "sdist"] | |
| steps: | |
| - uses: actions/download-artifact@v8 | |
| with: | |
| name: dist | |
| path: dist/ | |
| - name: Verify artifacts are present | |
| run: | | |
| ls -l . dist/ | |
| wheel_file=$(find dist -name 'nipype-*.whl' | head -n 1) | |
| tar_file=$(find dist -name 'nipype-*.tar.gz' | head -n 1) | |
| echo "WHEEL=$wheel_file" >> $GITHUB_ENV | |
| echo "SDIST=$tar_file" >> $GITHUB_ENV | |
| - name: Install Python | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: "3.13" | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install wheel | |
| run: pip install $WHEEL[tests] | |
| if: matrix.package == 'wheel' | |
| - name: Install sdist | |
| run: pip install $SDIST[tests] | |
| if: matrix.package == 'sdist' | |
| - name: Display nipype version | |
| run: python -c 'import nipype; print(nipype.__version__)' | |
| - name: Run tests | |
| run: pytest --doctest-modules -v --pyargs nipype | |
| test: | |
| # Check each OS, all supported Python, minimum versions and latest releases | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| dependencies: [none, full, pre] | |
| include: | |
| - os: ubuntu-latest | |
| python-version: "3.10" | |
| dependencies: min | |
| exclude: | |
| # Skip some intermediate versions for full tests | |
| - python-version: "3.10" | |
| dependencies: full | |
| - python-version: "3.11" | |
| dependencies: full | |
| # Do not test pre-releases for versions out of SPEC0 | |
| - python-version: "3.10" | |
| dependencies: pre | |
| - python-version: "3.11" | |
| dependencies: pre | |
| env: | |
| DEPENDS: ${{ matrix.dependencies }} | |
| steps: | |
| - uses: actions/checkout@v6 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v7 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install tox | |
| run: | | |
| uv tool install --with=tox-uv --with=tox-gh-actions tox | |
| - name: Show tox config | |
| run: tox c | |
| - name: Run tox | |
| run: tox -v --exit-and-dump-after 1200 | |
| - uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| if: ${{ always() }} | |
| - name: Upload pytest test results | |
| uses: actions/upload-artifact@v7 | |
| with: | |
| name: pytest-results-${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.dependencies }} | |
| path: test-results.xml | |
| if: always() | |
| publish: | |
| runs-on: ubuntu-latest | |
| environment: "Package deployment" | |
| needs: [test, test-package] | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/') | |
| steps: | |
| - uses: actions/download-artifact@v8 | |
| with: | |
| name: dist | |
| path: dist/ | |
| - uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} | |
| checks: | |
| runs-on: 'ubuntu-latest' | |
| continue-on-error: true | |
| strategy: | |
| matrix: | |
| check: ['specs', 'style'] | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v7 | |
| - name: Install tox | |
| run: uv tool install --with=tox-uv tox | |
| - name: Show tox config | |
| run: tox c | |
| - name: Show tox config (this call) | |
| run: tox c -e ${{ matrix.check }} | |
| - name: Run check | |
| run: tox -e ${{ matrix.check }} |