@@ -6,7 +6,7 @@ Installation
6
6
7
7
There are two ways to get *fMRIPrep * installed:
8
8
9
- * within a `Manually Prepared Environment (Python 3.5 +) `_, also known as
9
+ * within a `Manually Prepared Environment (Python 3.7 +) `_, also known as
10
10
*bare-metal installation *; or
11
11
* using container technologies (RECOMMENDED), such as :ref: `run_docker `
12
12
or :ref: `run_singularity `.
@@ -55,10 +55,10 @@ You can check your `Docker Engine`_ installation running their ``hello-world`` i
55
55
$ docker run --rm hello-world
56
56
57
57
If you have a functional installation, then you should obtain the following output. ::
58
-
58
+
59
59
Hello from Docker!
60
60
This message shows that your installation appears to be working correctly.
61
-
61
+
62
62
To generate this message, Docker took the following steps:
63
63
1. The Docker client contacted the Docker daemon.
64
64
1. The Docker daemon pulled the "hello-world" image from the Docker Hub.
@@ -67,19 +67,19 @@ If you have a functional installation, then you should obtain the following outp
67
67
executable that produces the output you are currently reading.
68
68
1. The Docker daemon streamed that output to the Docker client, which sent it
69
69
to your terminal.
70
-
70
+
71
71
To try something more ambitious, you can run an Ubuntu container with:
72
72
$ docker run -it ubuntu bash
73
-
73
+
74
74
Share images, automate workflows, and more with a free Docker ID:
75
75
https://hub.docker.com/
76
-
76
+
77
77
For more examples and ideas, visit:
78
78
https://docs.docker.com/get-started/
79
79
80
80
After checking your Docker Engine is capable of running Docker images, then go ahead
81
81
and `check out our documentation <docker.html >`_ to run the *fMRIPrep * image.
82
- The list of Docker images ready to use is found at the `Docker Hub `_,
82
+ The list of Docker images ready to use is found at the `Docker Hub `_,
83
83
under the ``poldracklab/fmriprep `` identifier.
84
84
85
85
The ``fmriprep-docker `` wrapper
@@ -106,7 +106,7 @@ Please make sure you `follow our tips and tricks to run fMRIPrep's Singularity i
106
106
<singularity.html> `_.
107
107
108
108
109
- Manually Prepared Environment (Python 3.5 +)
109
+ Manually Prepared Environment (Python 3.7 +)
110
110
===========================================
111
111
112
112
.. warning ::
@@ -121,7 +121,7 @@ A relatively interpretable description of how your environment can be set-up
121
121
is found in the `Dockerfile <https://github.com/poldracklab/fmriprep/blob/master/Dockerfile >`_.
122
122
As an additional installation setting, FreeSurfer requires a license file (see :ref: `fs_license `).
123
123
124
- On a functional Python 3.5 (or above) environment with ``pip `` installed,
124
+ On a functional Python 3.7 (or above) environment with ``pip `` installed,
125
125
*fMRIPRep * can be installed using the habitual command ::
126
126
127
127
$ python -m pip install fmriprep
@@ -134,7 +134,7 @@ Check your installation with the ``--version`` argument ::
134
134
External Dependencies
135
135
---------------------
136
136
137
- *fMRIPRep * is written using Python 3.5 (or above), and is based on
137
+ *fMRIPRep * is written using Python 3.7 (or above), and is based on
138
138
nipype _.
139
139
140
140
*fMRIPRep * requires some other neuroimaging software tools that are
0 commit comments