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data/generic/tsv/arriba.tsv

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#gene1 gene2 strand1(gene/fusion) strand2(gene/fusion) breakpoint1 breakpoint2 site1 site2 type direction1 direction2 split_reads1 split_reads2 discordant_mates coverage1 coverage2 confidence closest_genomic_breakpoint1 closest_genomic_breakpoint2 filters fusion_transcript reading_frame peptide_sequence read_identifiers
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FGFR3 TACC3 +/+ +/+ 4:1806934 4:1727977 splice-site CDS duplication downstream upstream 88 97 300 245 418 high . . duplicates(82),low_entropy(8),mismappers(2),mismatches(3) CTGACAAGGACCTGTCGGACCTGGTGTCTGAGATGGAGATGATGAAGATGATCGGGAAACACAAAAACATCATCAACCTGCTGGGCGCCTGCACGCAGGGC...GCtAAGGGTAACCTGCGGGAGTTTCTGCGGGCGCGGCGGCCCCCGGGCCTGGACTACTCCTTCGACACCTGCAAGCCGCCCGAGGAGCAGCTCACCTTCAA...GGACAACGTGATGAAGATCGCAGACTTCGGGCTGGCCCGGGACGTGCACAACCTCGACTACTACAAGAAGACaACCAAC___GGCCGGCTGCCCGTGAAGTGGATGGCGCCTGAGGCCTTGTTTGACCGAGTCTACACTCACCAGAGTGACGT___CTGGTCCTTTGGGGTCCTGCTCTGGGAGATCTTCACGCTGGGGGGCTCCCCGTACCCCGGCATCCCTGTGGAGGAGCTCTTCAAGCTGCTGAAGGAGGGCCACCGCATGGACAAGCCCGCCAACTGCACACACGACCT___GTACATGATCATGCGGGAGTGCTGGCATGCCGCGCCCTCCCAGAGGCCCACCTTCAAGCAGCTGGTGGAGGACCTGGACCGTGTCCTTACCGTGACGTCCACCGAC|ACAGAAGAGTGACACCCGCCTCTGAGACCCTAGAAGACCCTTGCAGGACAGAGTCCCAGCACAAAGCGGAGACTCCGCACGGAGCCGAGGAAGAATGCAAAGCGGAGACTCCGCACGGAGCCGAGGAGGAATGCCGGCACGGTGGGGTCTGTGCTCCCGCAGCAGTGGCCACTTCGCCTCCTGGTGCAATCCCTAAGGAAGCCTGCGGAGGAGCACCCCTGCAGGGTCTGCCTGGCGAAGCCCTGGGCTGCCCTGCGGGTGTGGGCACCCCCGTGCCAGCAGATGGCACTCAGACCCTTACCTGTGCACACACCTCTGCTCCTGAGAGCACAGCCCCAACCAACCACCTGGTGGCTGGCAGGGCCATGACCCTGAGTCCTCAGGAAGAAGTGGCTGCAGGCCAAATGGCCAGCTCCTCGAGGAGCGGACCTGTAAAACTAGAATTTGATGTATCTGATGGCGCCACCAGCAAAAGGGCACCCCCACCAAGGAGACTGGGAGAGAGGTCCGGCCTCAAGCCTCCCTTGAGGAAAGCAGCAGTGAGGCAGCAAAAGGCCCCGCAGGAGGTGGAGGAGGACGACGGTAGGAGCGGAGCAGGAGAGGACCCCCCCATGCCAGCTTCTCGGGGCTCTTACCACCTCGACTGGGACAAAATGGATGACCCAAAC out-of-frame DNVMKIADFGLARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVTSTD|tee* .
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FIP1L1 PDGFRA +/+ +/+ 4:53425965 4:54274925 splice-site CDS deletion downstream upstream 31 74 16 45 122 high . . duplicates(19),inconsistently_clipped(1),low_entropy(2) GGgAGAGTTTATGGAACTACAG___GGACAAAAGTCAAAGGAGTAtACCTTGATGCACCTGGAAGCATTAATGGAGTTCCACTCTTAGAGGTAGATTTGGATTC...CTG___GTGCTGATCTTTCTGATTATTTTAATTATGGGTTTAATGAAGATACCTGGAAAGCTTACTGTGAAAAACAAAAGAGGATACGAATGGGACTTGAAGTTATACCAGTAACCTCTACTACAAATAAAATTACG___GTACAGCAGGGAAGAACTGGAAACTCAGAGAAAGAAACTGCCCTTCCATCTACAAAAGCTGAGTTTACTTCTCCTCCTTCTTTGTTCAAGACTGGGCTTCCACCGAGCAG___...GGGAGGGCCGAATCACCTGATCTAAG___GAGATTACCTGGGGCAATTGATGTTATCGGTCAGACTATAACTATCAGCCGAGTAGAAGGCAGGCGACGGGCAAATGAGAACAGCAACATACAG|CTGCCTTATGACTCAAGATGGGAGTTTCCAAGAGATGGACTAGTGCTTG___GTCGGGTCTTGGGGTCTGGAGCGTTTGGGAAGGTGGTTGAAGGAACAGCCTATGGATTAAGCCGGTCCCAACCTGTCATGAAAGTTGCAGTGAAGATGCTAAAAC___CCACGGCCAGATCCAGTGAAAAACAAGCTCTCATGTCTGAACTGAAGATAATGACTCACCTGGGGCCACATTTGAACATTGTAAACTTGCTGGGAGCCTGCACCAAGTCAG___GCCCCATTTACATCATCACAGAGTATTGCTTCTATGGAGATTTGGTCAACTATTTGCATAAGAATAGGGATAGCTTCCTGAGCCACCACCCAGAGAAGCCAAAGAAAGAGCTGGATATCTTTGGATTGAACCCTGCTGATGAAAGCACACGGAG___CTATGTTATTTTATCTTTTGAAAACAATGGTGACTACATGGACATGAAGC...CTGATACTACACAGTATGTCCCCATGCTAGAAAGGAAAGAGGTTTCTAAATATTCCGACATCCAGAGATCACTCTATGATCGTCCAGCCTCATATAAGAAGAAATCTATGTTAG___ACTCAGAAGTCAAAAAC in-frame GRAESPDLRRLPGAIDVIGQTITISRVEGRRRANENSNIQ|LPYDSRWEFPRDGLVLGRVLGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDSFLSHHPEKPKKELDIFGLNPADESTRSYVILSFENNGDYMDMK .
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GOPC ROS1 -/- -/- 6:117566854 6:117321394 splice-site splice-site deletion/read-through upstream downstream 35 16 26 123 145 high . . duplicates(77),low_entropy(4),mismatches(1) CACAAAACTGTGATCCGAGCCTGCAGAGGACGTAATGACTTGAAACGACCAATGCAAGCACCACCAGGCaAT___GATCAAGATTCCCTAAAGAAAAGCCAAGG...TTCTCCTCCTTAAGGAAGATCATGAAGGCCTTGGCATTTCAATTACA___GGTGGGAAAGAACATGGTGTTCCAATCCTCATCTCTGAGATCCATCCGGGGCAACCTGCTGATAGATGCGGAGGGCTGCACGTTGGGGATGCTATTTTGGCAGTCAACGGAGTTAACCTAAGGGACACAAAGCATAAAGAAGCTGTAACTATTCTTTCTCAGCAG___AGAGGAGAGATTGAATTTGAAGTAGTTTATGTGGCTCCTGAAGTGGATTCTGATGATGAAAACGTAGAGTATGAAGATGAGAGTGGACATCGTTACCGTTTGTACCTTGATGAGTTAGAAGGAGGTGGTAACCCTGGTGCTAGTTGCAAAGACACAAGTGGGGAAATCAAAGTATTACAAG|TCTGGCATAGAAGATTAAAGAATCAAAAAAGTGCCAAGGAAGGGGTGACAGTGCTTATAAACGAAGACAAAGAGTTGGCTGAGCTGCGAGGTCTGGCAGCCGGAGTAGGCCTGGCTAATGCCTGCTATGCAATACA___TACTCTTCCAACCCAAGAGGAGATTGAAAATCTTCCTGCCTTCCCTCGGGAAAAACTGACTCTGCGTCTCTTGCTGGGAAGTGGAGCCTTTGGAGAAGTGTATGAAGGAACAGCAGTGGACATCTTAGGAGTTGGAAGTtGAGAAATCAAAGTAGCAGTGAAG___ACTTTGAAGAAGtGTTC...TCTGCTtAATGAACCCCAATtCATTATCCTGGAACTGATGGAGGGAGGAGACCTTCTTACTTATTTGCGTAAAGCCCGGATGGCAACG___TTTTATGGTCC in-frame LLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVAPEVDSDDENVEYEDESGHRYRLYLDELEGGGNPGASCKDTSGEIKVLQ|vWHRRLKNQKSAKEGVTVLINEDKELAELRGLAAGVGLANACYAIHTLPTQEEIENLPAFPREKLTLRLLLGSGAFGEVYEGTAVDILGVGS* .
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GOPC ROS1 -/- -/- 6:117566854 6:117320030 splice-site splice-site deletion/read-through upstream downstream 1 0 8 123 29 low . . mismatches(1) CGGAGTTAACCTAAGGGACACAAAGCATAAAGAAGCTGTAACTATTCTTTCTCAGCAG___AGAGGAGAGATTGAATTTGAAGTAGTTTATGTGGCTCCTGAAGTGGATTCTGATGATGAAAACGTAGAGTATGAAGATGAGAGTGGACATCGTTACCGTTTGTACCTTGATGAGTTAGAAGGAGGTGGTAACCCTGGTGCTAGTTGCAAAGACACAAGTGGGGAAATCAAAGTATTACAAG|TACTCTTCCAACCCAAGAGGAGATTGAAAATCTTCCTGCCTTCCCTCGGGAAAAACTGACTCTGCGTCTCTTGCTGGGAAGTGGAGCCTTTGGAGAAGTGTATGAAGGAACAGCAGTGGACATCTTAGGAGTTGGAAGTGGAGAAATCAAAGTAGCAGTGAAG___ACTTTGAAGAAGGGTTCCACAGACCAGGAGAAGATTGAATTCCTGAAGGAGGCACATCTGATGAG___CAAATTTAATCATCC out-of-frame GVNLRDTKHKEAVTILSQQRGEIEFEVVYVAPEVDSDDENVEYEDESGHRYRLYLDELEGGGNPGASCKDTSGEIKVLQ|vlfqpkrrlkiflpslgkn* .
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HOOK3 RET +/+ +/+ 8:42968214 10:43116584 splice-site splice-site translocation downstream upstream 9 1 2 35 7 high . . . AGATCGACGTGCTGAG___ACATTCTTCTGATAAAGTATCTAAACTAGAAGGTCAAGTAGAATCTTATAAAAAGAAGCTAGAAGACCTTGGTGATTTAAGGCGGCAGGTTAAACTCTTAGAAGAGAAGAATACCATGTATATGCAGAATACTGTCAGTCTAGAGGAAGAGTTAAGAAAGGCCAACGCAGCGCGAAGTCAACTTGAAACCTACAAGAGACAG|GAGGATCCAAAGTGGGAATTCCCTCGGAAGAACTTGGTTCTTGGAAAAACTCTAGGAGAAGGCGAATTTGGAAAAGTGGTCAAGGCAACGGCCTTCCATCTGAAAGGCAGAGCAGGGTACACCACGGTGGCCGTGAAGATGCTGAAAG___AGAACGCCTCCCCGAGTGAGCTGCGgGACCTGCTGTCAGAGTTCAAC in-frame IDVLRHSSDKVSKLEGQVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELRKANAARSQLETYKRQ|EDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEF .
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ETV6 NTRK3 +/+ -/- 12:11869969 15:87940753 splice-site splice-site translocation downstream downstream 5 4 2 81 7 high . . . CATGCACCCTCTGATCCTGAACCCCCGGCACTCCGTGGATTTCAAACAGTCCAGGCTCTCCGAGGACGGGCTGCATAGGGAAGGGAAGCCCATCAACCTCTCTCATCGGGAAGACCTGGCTTACATGAACCACATCATGGTCTCTGTCTCCCCGCCTGAAGAGCACGCCATGCCCATTGGGAGAATAGCAG|ATGTGCAGCACATTAAGAGGAGAGACATCGTGCTGAAGCGAGAACTGGGTGAGGGAGCCTTTGGAAAGGTCTTCCTGGCCGAGTGCTACAACCTCAGCCCGACCAAGGACAAGATGCTTGTGGCTGTGAAG___GCCCTGAAGGATCCCACCCTGGCTGCCCG...GCTGCTCACCAACCTGCAGCATGAGCACATTGTCAAGTTCTATGGAGTGTGCGGCGATGGGGACCCCCTCATCATGGTCTTTGAATACATGAAGCATGGAG in-frame MHPLILNPRHSVDFKQSRLSEDGLHREGKPINLSHREDLAYMNHIMVSVSPPEEHAMPIGRIA|dVQHIKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAA .
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EWSR1 ATF1 +/+ +/+ 22:29287134 12:50814280 splice-site splice-site translocation downstream upstream 5 5 1 1089 142 high . . . TGCACCTCCATCCTACCCTCCTACCAG___CTATTCCTCTACACAGCCGACTAGTTATGATCAGAGCAGTTACTCTCAGCAGAACACCTATGGGCAACCGAGCAGCTATGGACAGCAGAGTAGCTATGGTCAACAAAGCAGCTATGGGCAGCAGCCTCCCACTAGTTACCCACCCCAAACTGGATCCTACAGCCAAGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGA|CTGCATCAGGAGATATGCAAACATATCAGATCCGAACTACACCTTCAGCTACTTCTCTGCCACAAACTGTGGTGATGACATCTCCTGTGACTCTCACCTCTCAGACAACTAAGACAGATGACCCCCAATTGAAAAGAGAAATAAGGTTAATGAAAAAC in-frame APPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQ|tASGDMQTYQIRTTPSATSLPQTVVMTSPVTLTSQTTKTDDPQLKREIRLMK .
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AKAP9 BRAF +/+ -/- 7:92003235 7:140787584 splice-site splice-site inversion downstream downstream 2 3 4 48 34 high . . . GTGATACTCAAGTAAGCTCTTTATTAGATGGAGTTGTGACCATGACAAGCAGGGGTGCTGAAGGATCAGTTTCTAAAGTAAATAAAAGTTTTGGTGAAGAATCAAAAATAATGGTGGAAGATAAAGTTTCTTTTGAAAATATGACTGTTGGAGAAGAAAGTAAGCAAGAACAGTTGATTTTGGATCACTTACCATCTGTAACAAAGGAATCATCACTTAGAGCAACTCAACCAAGTGAAAATGATAAACTTCAGAAAGAACTCAATGTACTTAAATCAGAACAG|GACTTGATTAGAGACCAAGGATTTCGTGGTGATGGAG___GATCAACCACAGGTTTGTCTGCTACCCCCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGCCTTACAGAAATCTCCAGGACCTCAGCGAGAAAGGAAGTCATCTTCATCCTCAGAAGACAGGAATCGAATG___AAAACACTTGGTAGACGGGACTCGAGTGATGATTGG in-frame DTQVSSLLDGVVTMTSRGAEGSVSKVNKSFGEESKIMVEDKVSFENMTVGEESKQEQLILDHLPSVTKESSLRATQPSENDKLQKELNVLKSEQ|DLIRDQGFRGDGGSTTGLSATPPASLPGSLTNVKALQKSPGPQRERKSSSSSEDRNRMKTLGRRDSSDD .
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BRD4 NUTM1 -/- +/+ 19:15254152 15:34347969 splice-site splice-site translocation upstream upstream 2 5 1 101 10 high . . . AGGAAACCTCAAG___CTGAGAAAGTTGATGTGATTGCCGGCTCCTCCAAGATGAAGGGCTTCTCGTCCTCAGAGTCGGAGAGCTCCAGTGAGTCCAGCTCCTCTGACAGCGAAGACTCCGAAACAG|CATCTGCATTGCCGGGACCGGATATGAGCATGAAACCTAGTGCCGCCCtGTCTCCATCCCCTGCACTTCCCTTTCTCCCACCAACTTCTGACCCACCAGACCACCCACCCAGGGAGCCACCTCCACAGCCCATCATGCCTTCAGTATTCTCTCCAGACAACCCTCT in-frame RKPQAEKVDVIAGSSKMKGFSSSESESSSESSSSDSEDSET|aSALPGPDMSMKPSAAlSPSPALPFLPPTSDPPDHPPREPPPQPIMPSVFSPDNP .
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EML4 ALK +/+ -/- 2:42301394 2:29223584 splice-site 5'UTR inversion downstream downstream 1 3 3 71 7 high . . mismatches(1) TGAAAAGCCAAAATTTGTGCAGTGTTTAGCATTCTTGGGGAATGGAGATGTTCTTACTGGAGACTCAGGTGGAGTCATGCTTATATGGAGCAAAACTACTGTAGAGCCCACACCTGGGAAAGGACCTAAAt___GTGTATATaAAATCAGCAAACtAATCAAAGCTCATGAT...GTTCACACTTTGTCAGATGAGAAATGGGATGTTATTAACTGGAGGAGGGAAAGACAGAAAAATAATTCTGTGGGATCATGATCTGAATCCTGAAAGAGAAATAGAGtT|TAGTGCTTCAAGGGCCAGGCTGCCAGGCCATGTTGCAGCTGACCACCCACCTGCAGTGTACCGCCGGAAGCACCAGGAGCTGCAAGCCATGCAGATGGAGCTGCAGAGCCCTGAGTACAAGCTGAGCAAGCTCCGCACCTCGACCATCATGACCGACTACAACCCCAACTACTGCTTTGCTGGCAAGACC in-frame FTLCQMRNGMLLTGGGKDRKIILWDHDLNPEREIEf|sasrarlpghvaadhppavyrrkhqelqaMQMELQSPEYKLSKLRTSTIMTDYNPNYCFAGK .
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CD74 ROS1 -/- -/- 5:150404680 6:117324415 splice-site splice-site translocation upstream downstream 2 3 0 8 6 high . . low_entropy(1) CCTGAAGGTGTACCCGCCACTGAAGGGGAGCTTCCCGGAGAACCTGAGACACCTTAAGAACACCATGGAGACCATAGACTGGAAG___GTCTTTGAGAGCTGGATGCACCATTGGCTCCTGTTTGAAATGAGCAGGCACTCCTTGGAGCAAAAGCCCACTGACGCTCCACCGAAAG|ATGATTTTTGGATACCAGAAACAAGTTTCATACTTACTATTATAGTTGGAATATTTCTGGTTGTTACAATCCCACTGACCTTTG___TCTGGCATAGAAGATTAAAGAATCAAAAAAGTGCCAAGGAAGGGGTGACAGTGCTTATAAACGAAGACAAAGAGTTGGCTGAGCTGCGAGGTCTGGCAGCCGGAGTAGGCCTGGCTAATGCCTGCTATGCAATACA___TACTCTTCCAACCCAAGAGGAG in-frame LKVYPPLKGSFPENLRHLKNTMETIDWKVFESWMHHWLLFEMSRHSLEQKPTDAPPK|dDFWIPETSFILTIIVGIFLVVTIPLTFVWHRRLKNQKSAKEGVTVLINEDKELAELRGLAAGVGLANACYAIHTLPTQE .
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TMPRSS2 ETV1 -/- -/- 21:41494375 7:13935838 CDS CDS translocation upstream downstream 3 7 3 7 114 medium . . mismatches(1) ATGGCTTTGAACTCA___GGGTCACCACCAGCTATTGGACCTTACTATGAAAACCATGGATACCAACCGGAAAACCCCTATCCCGCACAGCCCACTGTGGTCCCCACTGTCTACGAGGTGCATCCGGCTCAGTACTACCCGTCCCCCGTGCCCCAGTACGCCCCGAGGGTCCTGACGCAGGCTTCCAACCCCGTCGTCTGCACGCAGCCCAAATCCCCATCC|AGCACGCCAGTGTCCCCACTGCATCATGCATCTCCAAACTCAACTCATACACCGAAACCTGACCGGGCCTTCCCAGCTCACCTCCCTCCATCGCAGTCCATACCAGATAGCAGCTACCCCATGGACCACAG___ATTTCGCCGCCAGCTTTCTGAACCCTGTAACTCCTTTCCTCCTTTGCCGACGATGCCAAGGGAAGGACGTCCTATGTACCAACGCCAGATGTCTGAGCCAAACATCC in-frame MALNSGSPPAIGPYYENHGYQPENPYPAQPTVVPTVYEVHPAQYYPSPVPQYAPRVLTQASNPVVCTQPKSPS|STPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPDSSYPMDHRFRRQLSEPCNSFPPLPTMPREGRPMYQRQMSEPNI .
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EWSR1 FLI1 +/+ +/+ 22:29287134 11:128807180 splice-site splice-site translocation downstream upstream 3 3 3 1089 23 medium . . . CTAGTCAACCTCAATCTAGCACAGGGGGTTACAACCAGCCCAGCCTAGGATATGGACAGAGTAACTACAGTTATCCCCAGGTACCTGGGAGCTACCCCATG...CTACACAGCCGACTAGTTATGATCAGAGCAGTTACTCTCAGCAGAACACCTATGGGCAACCGAGCAGCTATGGACAGCAGAGTAGCTATGGTCAACAAAGCAGCTATGGGCAGCAGCCTCCCACTAGTTACCCACCCCAAACTGGATCCTACAGCCAAGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAGA|GTCCTCCCCTTGGAGGGGCACAAACGATCAGTAAGAATACAGAGCAACGGCCCCAGCCAG___ATCCGTATCAGATCCTGGGCCCGACCAGCAGTCGCCTAGCCAACCCTG___GAAGCGGGCAGATCCAGCTGTGGCAATTCCTCCTGGAGCTGCTCTCCGACAGCGCCAACGCCAGCTGTATCACCTGGGAGGGGACCAACGGGGAG in-frame TQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQ|sPPLGGAQTISKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSANASCITWEGTNG .
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BRD4(1122),BRD4-1(2233) NUTM1 -/- +/+ 19:15254152 15:34347969 splice-site splice-site translocation upstream upstream 2 5 1 101 10 high . . . AGGAAACCTCAAG___CTGAGAAAGTTGATGTGATTGCCGGCTCCTCCAAGATGAAGGGCTTCTCGTCCTCAGAGTCGGAGAGCTCCAGTGAGTCCAGCTCCTCTGACAGCGAAGACTCCGAAACAG|CATCTGCATTGCCGGGACCGGATATGAGCATGAAACCTAGTGCCGCCCtGTCTCCATCCCCTGCACTTCCCTTTCTCCCACCAACTTCTGACCCACCAGACCACCCACCCAGGGAGCCACCTCCACAGCCCATCATGCCTTCAGTATTCTCTCCAGACAACCCTCT in-frame RKPQAEKVDVIAGSSKMKGFSSSESESSSESSSSDSEDSET|aSALPGPDMSMKPSAAlSPSPALPFLPPTSDPPDHPPREPPPQPIMPSVFSPDNP .

data/generic/tsv/starfusion.tsv

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#FusionName JunctionReadCount SpanningFragCount SpliceType LeftGene LeftBreakpoint RightGene RightBreakpoint JunctionReads SpanningFrags LargeAnchorSupport FFPM LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy annots
2+
FGFR3--TACC3 261 637 INCL_NON_REF_SPLICE FGFR3^ENSG00000068078 4:1806934:+ TACC3^ENSG00000013810 4:1727977:+ 90F,8MC,8OS,8JH,8KG,8LE,8MJ,908,8O4,8M3,8NA,935,8JN,8UA,8QY,8KD,8KT,8JM,8I6,8OT,8HW,8K2,8I0,8OK,94Z,8VS,919,8OY,8J2,8NR,8JX,8M9,90U,912,8J0,8LP,8JL,92F,8KW,8OG,8R2,8JO,8MP,9B8,8UL,9BO,8OE,8JR,8KJ,8KK,8ON,8J5,9A6,94W,9AV,8M0,8LH,8KN,8I8,8KM,9BE,8JU,8TL,8KX,91K,8M7,8LT,8MZ,8RM,928,8MS,9AJ,8NE,8JD,8KI,8JT,90A,8NB,8MD,8KL,8MQ,8WJ,8L3,8K6,8O8,8JG,8Z6,8LB,8LG,8LD,8ID,8ZB,8IA,8L1,8OQ,8NK,8MG,8LF,8J6,8O0,8L9,91M,8OD,8K5,8K9,9AX,8YX,9AQ,8MU,8IN,8I3,8JQ,8L4,8MR,93C,8O6,8LA,8IF,8N1,8X0,8QU,8K0,8O7,8MA,936,97J,8LN,8OZ,9C7,8ML,920,8OM,8J8,8HZ,8L6,8UY,8L2,8MY,8NV,93E,8IU,8KR,8KF,8LQ,8ZH,8LU,8NI,8KE,90Q,8MO,96R,8KP,8JZ,8I4,8IX,8NT,8KU,94A,8OA,8LJ,8K1,90D,8I2,8OL,8PP,8M8,8JV,8J3,8MT,8MI,8JY,9A2,96I,8P1,9A7,8JI,8LZ,8KC,8NJ,9AA,9AF,8KY,8LI,8O2,8MK,8JA,8JS,8LK,8TX,9AT,8IV,8IC,8LX,8K7,8O1,8OB,8JB,8IZ,9AB,8JP,977,8I7,8KO,8M5,8OJ,8LC,9C0,8MH,8LO,8L0,9AN,8IR,9AG,8MN,98W,8LM,8OR,8M1,8JW,8JJ,8IQ,8KZ,8OC,8XI,8ND,8IG,8N8,8VK,8JK,8KS,8HX,8T9,9AY,8MB,9BY,8ZR,9A8,9B4,8IK,8KV,8LV,8IL,8NZ,8NL,93S,8HT,8IB,8K3,8IJ,8II,8L8,8RW,8MV,8I9,8UO,8IH,8IT,97O,9BD,8HY,8V1 994,8PR,92Q,8YH,90V,98F,99Q,95S,8PA,8TZ,95N,8R5,8QR,91S,8VO,8XG,9BR,93Q,8XM,9BS,927,98B,90J,8ZL,8RX,8VD,914,92J,8V7,98G,8TQ,8YI,99L,8R3,8NW,91H,8WH,8U2,8W0,991,954,8W7,976,93B,8VL,91Z,9A9,8SM,95X,910,8P3,8TG,8YS,8YE,99H,8XK,96Z,958,8VC,8RY,8QM,95E,8XR,99T,8XU,92K,8PL,99P,95L,987,8VW,953,94L,8VE,95F,90I,8Y7,91X,973,964,95Z,8T7,8SI,8VG,8PZ,8SG,96F,8X1,9BG,8YC,978,94P,8S2,98A,90C,95G,98N,8PG,8TS,96G,9BK,8T6,99E,95K,98S,949,92S,93U,8TR,8RB,962,8YF,8N6,8ZK,955,93M,911,8RR,8ZI,8VI,8UN,8ST,95O,8ZQ,8X6,8RJ,940,8NC,99J,90G,8XP,98Z,96T,8PM,8XX,8RF,91Y,95Y,95T,8R9,99K,8UK,9AS,8SP,8SS,8SA,8QV,8QH,90O,8VQ,99F,8YZ,8N9,8WS,988,97A,90B,8T5,99C,8VP,8WD,95R,8U5,8ZU,8ZV,97S,906,95W,8TU,8XV,91W,902,8YY,8YM,8RN,8VM,956,8R4,95V,8VA,95U,8UQ,8P7,95Q,8SC,94D,8YU,99U,957,91C,8TM,90W,8P8,91N,94F,9AD,966,8SU,9BB,8TE,8ZT,8R1,990,98Y,98V,96U,99I,8WX,8T3,96D,8SR,8RE,93J,9A5,92N,8V0,8WZ,8V6,8TA,8R7,938,8QZ,9B5,970,97P,94R,92P,8S8,8TO,98P,98I,93D,9BL,8PD,8RI,8P6,92T,8PF,8ZE,8TF,96J,8ZG,97I,945,8UB,8W5,8RU,967,972,8QL,996,96A,9B2,97B,8SE,975,97X,90L,8RS,901,8Y0,921,8S1,96M,925,968,94J,91U,8YG,8XL,933,981,8ZS,94X,8WQ,9BC,8W1,8P5,8T1,905,95C,8T4,986,9AL,997,90T,926,8S7,8YN,8XQ,8U7,8XJ,8V9,8VR,97L,90H,8OV,8RL,8RA,8UE,995,8P4,8X5,8Z5,8QK,8QG,8SY,8P2,90R,8Y8,8XZ,944,8S3,8UW,8SW,8QB,9AW,8RT,946,8V8,8XH,8N5,992,8Q1,8Y6,99D,8Z2,8O5,8O9,8QT,92D,8WM,8ZY,900,8PT,8W9,9AC,97Q,8U1,96Y,94G,93Y,8Q4,8TY,94M,93I,92L,95M,8OO,999,913,8SL,8QC,8UZ,974,96H,8Z0,91T,8WY,8VH,92R,8QQ,907,8U0,8VY,8QE,8VB,8PQ,92W,8YQ,8T2,8RZ,93V,8TD,91P,8WB,8PB,95A,93O,8WI,8W6,8U6,8XE,929,941,98R,8XC,8ZN,97M,8RK,8R8,8U3,8YP,960,9BQ,8X8,8ZF,8T8,97D,91R,8S6,9AI,9BM,8XS,8PH,93T,8QJ,8U8,98O,92X,92B,930,8Z4,96B,917,94Q,92C,918,91I,8U4,94K,8SD,922,8XD,980,8SK,8Q2,97Y,8ZW,92I,96S,8TW,8QX,96W,9BW,8PV,8YV,8UM,8WU,8Z7,8SQ,90S,8WO,8WR,94U,9B9,8PW,8UD,923,8QA,8S0,8ZX,8TK,8X4,8X7,90P,8QF,93W,95J,91Q,91D,916,97K,8YT,8X3,8Z9,96K,93F,8YO,8SH,8PU,8Q5,8UJ,8SZ,8S4,94I,947,8WT,97E,8QO,8QW,99S,8Z1,8TP,8Y2,91F,8QS,95I,8YA,8XO,8U9,93G,8SF,9A3,96E,8P9,8SV,9BU,90Z,9BV,8PY,94B,91E,97T,94T,8W8,92U,971,8RV,8OU,943,8VT,93H,93A,8TB,8XY,9BI,8SJ,94S,915,8NX,91J,8ZC,8PE,959,97G,8YD,96Q,8YW,99A,8V2,8UU,96X,98T,8UT,8X2,96L,93R,98D,932,97R,94H,8XA,8OF,8W3,8NS,8OI,93X,99R,93K,8TT,96V,8WG,8WN,8ZD,97F,961,92V,90N,8US,91V,94O,99G,8UG,982,993,8NN,96C,8RP,8WL,8RC,94Y,94V,8R6,90E,8PN,8WW,8PJ,99N,9B6,96N,9BT,93Z,8UR,95D,92G,98H,8OP,92A,8Y3,8NH,8V5,8Z8,951,942,8Y5,937,96O,95P,8UP,8RH,8VN,8UF,8Y1,8UV,99O,8Q3,8PX,8RQ,8WA,8ZM,931,98K,8S9,8X9,8OH,8SB,8YK,8Y4,98M,979,8XT,8ZA,98Q,8YB,939,924,9C5,8ZZ,8O3,8QD,963,8T0,8VF,8S5,8V4,8Q9 YES_LDAS 71576.5981 GT 1.8892 AG 1.7465 ["Cosmic","ChimerPub","YOSHIHARA_TCGA","TumorFusionsNAR2018","ChimerKB","ChimerSeq","CCLE_StarF2019","TCGA_StarF2019","GUO2018CR_TCGA","Klijn_CellLines","INTRACHROMOSOMAL[4:0.05Mb]","LOCAL_REARRANGEMENT:+:[48117]"]
3+
HOOK3--RET 11 2 ONLY_REF_SPLICE HOOK3^ENSG00000168172 8:42968214:+ RET^ENSG00000165731 10:43116584:+ 3U0,7AL,5YM,734,50Q,6FY,1BJ,77F,36K,1MP,02M 84R,676 YES_LDAS 1036.1869 GT 1.7465 AG 1.8323 ["HaasMedCancer","ChimerKB","Cosmic","ChimerSeq","INTERCHROMOSOMAL[8--10]"]
4+
ETV6--NTRK3 10 4 ONLY_REF_SPLICE ETV6^ENSG00000139083 12:11869969:+ NTRK3^ENSG00000140538 15:87940753:- 6MX,4OA,2H7,6QT,3L1,37X,3VA,09A,6XD,63S 5TV,60G,568,4SW YES_LDAS 1115.8935 GT 1.7819 AG 1.9656 ["TCGA_StarF2019","HaasMedCancer","GUO2018CR_TCGA","chimerdb_omim","Cosmic","YOSHIHARA_TCGA","TumorFusionsNAR2018","ChimerPub","Larsson_TCGA","ChimerKB","ChimerSeq","chimerdb_pubmed","INTERCHROMOSOMAL[12--15]"]
5+
EWSR1--ATF1 10 3 ONLY_REF_SPLICE EWSR1^ENSG00000182944 22:29287134:+ ATF1^ENSG00000123268 12:50814280:+ 2EO,0DH,5VR,06O,1GL,1CY,3V6,407,2U2,66A 1GP,5DS,89R YES_LDAS 1036.1868 GT 1.8062 AG 1.9656 ["ChimerKB","Cosmic","Mitelman","ChimerPub","ChimerSeq","INTERCHROMOSOMAL[22--12]"]
6+
TMPRSS2--ETV1 10 3 INCL_NON_REF_SPLICE TMPRSS2^ENSG00000184012 21:41494375:- ETV1^ENSG00000006468 7:13935838:- 0IR,0GZ,52H,1YC,3JO,486,0TV,2TC,303,14G 75B,6EE,6ME YES_LDAS 1036.1868 GG 1.3383 CC 1.8892 ["ChimerSeq","Cosmic","TumorFusionsNAR2018","ChimerPub","TCGA_StarF2019","ChimerKB","chimerdb_pubmed","INTERCHROMOSOMAL[21--7]"]
7+
AKAP9--BRAF 6 4 ONLY_REF_SPLICE AKAP9^ENSG00000127914 7:92003235:+ BRAF^ENSG00000157764 7:140787584:- 22F,77O,48H,2WW,185,5YQ 77B,5I5,6JD,0CG YES_LDAS 797.0668 GT 1.8295 AG 1.9329 ["ChimerSeq","ChimerPub","Cosmic","HaasMedCancer","ChimerKB","chimerdb_pubmed","INTRACHROMOSOMAL[7:48.61Mb]"]
8+
CD74--ROS1 7 0 ONLY_REF_SPLICE CD74^ENSG00000019582 5:150404680:- ROS1^ENSG00000047936 6:117324415:- 4G4,33N,4UC,2TX,1QX,2B9,20K . YES_LDAS 557.9468 GT 1.7819 AG 1.7465 ["ChimerPub","Cosmic","TumorFusionsNAR2018","ChimerKB","ChimerSeq","chimerdb_pubmed","TCGA_StarF2019","GUO2018CR_TCGA","Klijn_CellLines","INTERCHROMOSOMAL[5--6]"]
9+
BRD4--NUTM1 6 2 ONLY_REF_SPLICE BRD4^ENSG00000141867 19:15254152:- NUTM1^ENSG00000184507 15:34347969:+ 1XJ,0YN,0ZN,5SY,6C6,0BK 1Z3,4TU YES_LDAS 637.6535 GT 1.7465 AG 1.9329 ["ChimerSeq","ChimerKB","HaasMedCancer","Cosmic","CCLE_StarF2019","INTERCHROMOSOMAL[19--15]"]
10+
EML4--ALK 4 4 INCL_NON_REF_SPLICE EML4^ENSG00000143924 2:42301394:+ ALK^ENSG00000171094 2:29223584:- 7A8,6Q8,26T,2GO 883,0DV,3UT,2ZL YES_LDAS 637.6534 AA 1.3996 TG 1.9656 ["Klijn_CellLines","GUO2018CR_TCGA","HaasMedCancer","TCGA_StarF2019","CCLE_StarF2019","chimerdb_pubmed","ChimerSeq","ChimerKB","TumorFusionsNAR2018","Cosmic","YOSHIHARA_TCGA","ChimerPub","INTRACHROMOSOMAL[2:12.25Mb]"]
11+
EWSR1--FLI1 4 3 ONLY_REF_SPLICE EWSR1^ENSG00000182944 22:29287134:+ FLI1^ENSG00000151702 11:128807180:+ 1FV,67A,3N8,0IO 2DA,7DK,1L0 YES_LDAS 557.9467 GT 1.8062 AG 1.8062 ["ChimerKB","Cosmic","ChimerPub","Mitelman","Klijn_CellLines","ChimerSeq","CCLE_StarF2019","INTERCHROMOSOMAL[22--11]"]
12+
CD74--AL132671.2 3 0 INCL_NON_REF_SPLICE CD74^ENSG00000019582 5:150404680:- AL132671.2^ENSG00000282218 6:117324415:- 2B9,1QX,4UC . YES_LDAS 239.12 GT 1.7819 AG 1.7465 ["INTERCHROMOSOMAL[5--6]"]
13+
NPM1--ALK 1 2 ONLY_REF_SPLICE NPM1^ENSG00000181163 5:171391799:+ ALK^ENSG00000171094 2:29223528:- 9O0 9NW,9NX YES_LDAS 239.1201 GT 1.9656 AG 1.9086 ["chimerdb_omim","Klijn_CellLines","chimerdb_pubmed","CCLE_StarF2019","ChimerKB","Cosmic","Mitelman","ChimerPub","ChimerSeq","INTERCHROMOSOMAL[5--2]"]

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