nf-core/scdownstream: Changelog

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

v0.0.1dev - [2024-10-17]

Initial release of nf-core/scdownstream, created with the nf-core template.

Add ribosomal/haemoglobin QC metrics [[#277]#277]
Add reporting using Quarto [#258]
Convert to Nextflow strict mode [#244]
Add singleR module for automated cell type annotation [#200]
Use topics for software versioning [#252]
Added singleR module for automated cell type annotation.
Added scDblFinder module for doublet detection.
Added optional doublet_rate column in input samplesheet to provide per-sample expected doublet rate for scDblFinder.

Updated scDblFinder to use internal dbr estimation when doublet_rate is not provided, and to use provided doublet_rate when available.