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Fix samplesheet channel when norm step #72
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bugSomething isn't workingSomething isn't workinggood first issueGood for newcomersGood for newcomershelp wantedExtra attention is neededExtra attention is needed
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This is a very easy fix, just need to add a new condition after checking meta.status == 0:
else if (meta.sample.contains("vs")) {
// Sample already has "vs" format, use as is
meta = meta + [id: meta.sample, data_type: 'vcf', variantcaller: variantcaller]
return [ meta - meta.subMap('lane'), vcf ]
}
This should avoid some weird sample names. Putting it here as it would be good to revise the whole subworkflow in case there is need for some small fix somewhere else related to this.
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bugSomething isn't workingSomething isn't workinggood first issueGood for newcomersGood for newcomershelp wantedExtra attention is neededExtra attention is needed