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Proposal: Static types #1069

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Proposal: Static types

Proposal: Static types #1069

Triggered via pull request May 15, 2025 12:09
@bentshermanbentsherman
synchronize #309
dsl3
Status Failure
Total duration 7m 45s
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ci.yml

on: pull_request
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191 errors and 52 warnings
Test Workflow PIPELINE_COMPLETION.Should run: Test Workflow PIPELINE_COMPLETION#L1
Assertion failed: 1 of 1 assertions failed
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 2 of 2 assertions failed
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test | latest-everything | docker
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_aspera.nf.test | 25.04.0 | docker
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_aspera.nf.test | 25.04.0 | docker
Process completed with exit code 1.
Test Process CUSTOM_SRATOOLSNCBISETTINGS.Should run without failures: Test Process CUSTOM_SRATOOLSNCBISETTINGS#L1
Assertion failed: assert process.success | | | false CUSTOM_SRATOOLSNCBISETTINGS
Test process: SRA_IDS_TO_RUNINFO.Should run without failures: Test process: SRA_IDS_TO_RUNINFO#L1
Assertion failed: 2 of 2 assertions failed
Test process: SRA_FASTQ_FTP.Should run without failures: Test process: SRA_FASTQ_FTP#L1
Assertion failed: 2 of 2 assertions failed
modules/local/sra_ids_to_runinfo/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
modules/local/sra_ids_to_runinfo/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should run no inputs: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should print version: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 2 of 2 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should dump params: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should not create params JSON if no output directory: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 2 of 2 assertions failed
modules/local/sra_fastq_ftp/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
modules/local/sra_fastq_ftp/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
nf.Parameters: default: nf#L1
Assertion failed: 2 of 2 assertions failed
Test Workflow UTILS_NFCORE_PIPELINE.Should run without failures: Test Workflow UTILS_NFCORE_PIPELINE#L1
Assertion failed: 2 of 2 assertions failed
Test process: SRA_IDS_TO_RUNINFO.Should run without failures: Test process: SRA_IDS_TO_RUNINFO#L1
Assertion failed: 2 of 2 assertions failed
Test Process CUSTOM_SRATOOLSNCBISETTINGS.Should run without failures: Test Process CUSTOM_SRATOOLSNCBISETTINGS#L1
Assertion failed: assert process.success | | | false CUSTOM_SRATOOLSNCBISETTINGS
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params - custom schema: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test | 25.04.0 | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test | 25.04.0 | docker
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | latest-everything | docker
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | latest-everything | docker
Process completed with exit code 1.
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 2 of 2 assertions failed
subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
Test process: SRA_FASTQ_FTP.Should run without failures: Test process: SRA_FASTQ_FTP#L1
Assertion failed: 2 of 2 assertions failed
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
workflows/sra/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
workflows/sra/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test | 25.04.0 | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test | 25.04.0 | docker
Process completed with exit code 1.
modules/local/sra_ids_to_runinfo/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
modules/local/sra_ids_to_runinfo/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
nf.Parameters: default: nf#L1
java.lang.RuntimeException: Workflow has no output channels. workflow.out can not be used.
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 2 of 2 assertions failed
workflows/sra/tests/sra_skip_fastq_download.nf.test | 25.04.0 | docker
Process completed with exit code 1.
workflows/sra/tests/sra_skip_fastq_download.nf.test | 25.04.0 | docker
Process completed with exit code 1.
Test Workflow UTILS_NFCORE_PIPELINE.Should run without failures: Test Workflow UTILS_NFCORE_PIPELINE#L1
Assertion failed: 2 of 2 assertions failed
modules/local/sra_fastq_ftp/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
modules/local/sra_fastq_ftp/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
Test Process SRATOOLS_PREFETCH.sratools/prefetch: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 2 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch with sralite: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 2 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch/stub: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 2 of 2 assertions failed
workflows/sra/tests/sra_download_method_sratools.nf.test | latest-everything | docker
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_sratools.nf.test | latest-everything | docker
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | 25.04.0 | docker
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | 25.04.0 | docker
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 2 of 2 assertions failed
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
modules/nf-core/sratools/prefetch/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
modules/nf-core/sratools/prefetch/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 2 of 2 assertions failed
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | 25.04.0 | docker
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | 25.04.0 | docker
Process completed with exit code 1.
Test Functions.Test Function checkConfigProvided: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function checkProfileProvided: Test Functions#L1
Assertion failed: 1 of 2 assertions failed
Test Functions.Test Function workflowCitation: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function nfCoreLogo: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function dashedLine: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function without logColours: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function with logColours: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | 25.04.0 | docker
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | 25.04.0 | docker
Process completed with exit code 1.
Test process: ASPERA_CLI.Should run without failures: Test process: ASPERA_CLI#L1
Assertion failed: 2 of 2 assertions failed
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test | 25.04.0 | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test | 25.04.0 | docker
Process completed with exit code 1.
modules/local/aspera_cli/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
modules/local/aspera_cli/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
Test Workflow PIPELINE_INITIALISATION.Should run: Test Workflow PIPELINE_INITIALISATION#L1
Assertion failed: 1 of 1 assertions failed
Test pipeline.Run with profile test: Test pipeline#L1
Assertion failed: 6 of 6 assertions failed
tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test | latest-everything | docker
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 2 of 2 assertions failed
nf.Parameters: default: nf#L1
java.lang.RuntimeException: Workflow has no output channels. workflow.out can not be used.
Test Functions.Test Function getWorkflowVersion: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function dumpParametersToJSON: Test Functions#L1
Assertion failed: 1 of 1 assertions failed
Test Functions.Test Function checkCondaChannels: Test Functions#L1
Assertion failed: 1 of 2 assertions failed
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | latest-everything | docker
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test | latest-everything | docker
Process completed with exit code 1.
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should run no inputs: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should print version: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 2 of 2 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should dump params: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test Workflow UTILS_NEXTFLOW_PIPELINE.Should not create params JSON if no output directory: Test Workflow UTILS_NEXTFLOW_PIPELINE#L1
Assertion failed: 1 of 1 assertions failed
Test pipeline.Run with profile test: Test pipeline#L1
Assertion failed: 6 of 6 assertions failed
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test | latest-everything | docker
Process completed with exit code 1.
tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 2 of 2 assertions failed
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | latest-everything | docker
Process completed with exit code 1.
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | latest-everything | docker
Process completed with exit code 1.
Test process: SRA_RUNINFO_TO_FTP.Should run without failures: Test process: SRA_RUNINFO_TO_FTP#L1
Assertion failed: 2 of 2 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
Test Subworkflow UTILS_NFSCHEMA_PLUGIN.Should validate params - custom schema: Test Subworkflow UTILS_NFSCHEMA_PLUGIN#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 2 of 2 assertions failed
modules/local/sra_runinfo_to_ftp/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
modules/local/sra_runinfo_to_ftp/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | latest-everything | docker
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | latest-everything | docker
Process completed with exit code 1.
nf.Parameters: default: nf#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Function isSraId: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Function sraCheckENAMetadataFields [success]: Test Functions#L1
Assertion failed: 1 of 2 assertions failed
Test Functions.Function sraCurateSamplesheetWarn: Test Functions#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 2 of 2 assertions failed
workflows/sra/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
workflows/sra/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 2 of 2 assertions failed
workflows/sra/tests/sra_download_method_sratools.nf.test | 25.04.0 | docker
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_sratools.nf.test | 25.04.0 | docker
Process completed with exit code 1.
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test | 25.04.0 | docker
Process completed with exit code 1.
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test | 25.04.0 | docker
Process completed with exit code 1.
Test process: ASPERA_CLI.Should run without failures: Test process: ASPERA_CLI#L1
Assertion failed: 2 of 2 assertions failed
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | 25.04.0 | docker
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | 25.04.0 | docker
Process completed with exit code 1.
modules/local/aspera_cli/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
modules/local/aspera_cli/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
Test Process SRATOOLS_FASTERQDUMP.Single-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 2 of 2 assertions failed
Test Process SRATOOLS_FASTERQDUMP.Paired-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Function isSraId: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Function sraCheckENAMetadataFields [success]: Test Functions#L1
Assertion failed: 1 of 2 assertions failed
Test Functions.Function sraCurateSamplesheetWarn: Test Functions#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_FASTERQDUMP.Single-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 2 of 2 assertions failed
Test Process SRATOOLS_FASTERQDUMP.Paired-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 2 of 2 assertions failed
modules/nf-core/sratools/fasterqdump/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
modules/nf-core/sratools/fasterqdump/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test | latest-everything | docker
Process completed with exit code 1.
modules/nf-core/sratools/fasterqdump/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
modules/nf-core/sratools/fasterqdump/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
Test Functions.Test Function checkConfigProvided: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function checkProfileProvided: Test Functions#L1
Assertion failed: 1 of 2 assertions failed
Test Functions.Test Function workflowCitation: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function nfCoreLogo: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function dashedLine: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function without logColours: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function with logColours: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Workflow PIPELINE_COMPLETION.Should run: Test Workflow PIPELINE_COMPLETION#L1
Assertion failed: 1 of 1 assertions failed
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test | 25.04.0 | docker
Process completed with exit code 1.
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test | 25.04.0 | docker
Process completed with exit code 1.
Test process: SRA_RUNINFO_TO_FTP.Should run without failures: Test process: SRA_RUNINFO_TO_FTP#L1
Assertion failed: 2 of 2 assertions failed
modules/local/sra_runinfo_to_ftp/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
modules/local/sra_runinfo_to_ftp/tests/main.nf.test | 25.04.0 | docker
Process completed with exit code 1.
Test Process SRATOOLS_PREFETCH.sratools/prefetch: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 2 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch with sralite: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 2 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch/stub: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function getWorkflowVersion: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function dumpParametersToJSON: Test Functions#L1
Assertion failed: 1 of 1 assertions failed
Test Functions.Test Function checkCondaChannels: Test Functions#L1
Assertion failed: 1 of 2 assertions failed
modules/nf-core/sratools/prefetch/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
modules/nf-core/sratools/prefetch/tests/main.nf.test | latest-everything | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test | 25.04.0 | docker
Process completed with exit code 1.
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test | 25.04.0 | docker
Process completed with exit code 1.
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 2 of 2 assertions failed
workflows/sra/tests/sra_download_method_aspera.nf.test | latest-everything | docker
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_aspera.nf.test | latest-everything | docker
Process completed with exit code 1.
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 2 of 2 assertions failed
workflows/sra/tests/sra_skip_fastq_download.nf.test | latest-everything | docker
Process completed with exit code 1.
workflows/sra/tests/sra_skip_fastq_download.nf.test | latest-everything | docker
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 2 of 2 assertions failed
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | latest-everything | docker
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | latest-everything | docker
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 2 of 2 assertions failed
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | 25.04.0 | docker
Process completed with exit code 1.
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | 25.04.0 | docker
Process completed with exit code 1.
Test Workflow PIPELINE_INITIALISATION.Should run: Test Workflow PIPELINE_INITIALISATION#L1
Assertion failed: 1 of 1 assertions failed
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test | 25.04.0 | docker
Process completed with exit code 1.
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test | 25.04.0 | docker
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_download_method_aspera.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
modules/local/sra_ids_to_runinfo/tests/main.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
modules/local/sra_fastq_ftp/tests/main.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/main.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
modules/local/sra_ids_to_runinfo/tests/main.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_skip_fastq_download.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
modules/local/sra_fastq_ftp/tests/main.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_download_method_sratools.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
modules/nf-core/sratools/prefetch/tests/main.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
modules/local/aspera_cli/tests/main.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
tests/main.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
tests/main.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
modules/local/sra_runinfo_to_ftp/tests/main.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/main.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_download_method_sratools.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
modules/local/aspera_cli/tests/main.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
modules/nf-core/sratools/fasterqdump/tests/main.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
modules/nf-core/sratools/fasterqdump/tests/main.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
modules/local/sra_runinfo_to_ftp/tests/main.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
modules/nf-core/sratools/prefetch/tests/main.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_download_method_aspera.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_skip_fastq_download.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | latest-everything | docker
Failed to restore: Cache service responded with 422
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test | 25.04.0 | docker
Failed to restore: Cache service responded with 422