Fix nested params (close #11)

bentsherman · bentsherman · commit 1e650cc73297 · 2023-09-28T07:32:30.000-05:00
Signed-off-by: Ben Sherman &lt;bentshermann@gmail.com&gt;
diff --git a/launch.sh b/launch.sh
@@ -1,2 +1,2 @@
 export NXF_PLUGINS_DEV=$PWD/plugins
- ../nextflow-nf-prov/launch.sh "$@"
+ ../nextflow/launch.sh "$@"
diff --git a/plugins/nf-prov/src/main/nextflow/prov/BcoRenderer.groovy b/plugins/nf-prov/src/main/nextflow/prov/BcoRenderer.groovy
@@ -153,7 +153,7 @@ class BcoRenderer implements Renderer {
                 "external_data_endpoints": [],
                 "environment_variables": [:]
             ],
-            "parametric_domain": params.collect( (k, v) -> [
+            "parametric_domain": params.toConfigObject().flatten().collect( (k, v) -> [
                 "param": k,
                 "value": normalizePath(v.toString()),
                 "step": "0"

Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`export NXF_PLUGINS_DEV=$PWD/plugins`
`2`		`- ../nextflow-nf-prov/launch.sh "$@"`
	`2`	`+ ../nextflow/launch.sh "$@"`