CAPSULE EXCEPTION: Capsule not extracted. Unable to initialize nextflow environment

[CampingOnSeabed]

Bug report

I tried to run nextflow-24.04.1-all, it failed. AND, i also run normal nextflow, it is normal. But I need to do analysis on hpc, so i have to use nextflow-24.04.1-all
Thank you for help!

Expected behavior and actual behavior

Steps to reproduce the problem

(Provide a test case that reproduce the problem either with a self-contained script or GitHub repository)

Program output

the nextflow-24.04.1-all
(RNA) [chusy2024@hpc-login RNA]$ /public/slst/home/chusy2024/RNA/nextflow-24.04.1-all
it turns out:
CAPSULE EXCEPTION: Capsule not extracted. while processing attribute App-Class-Path: [/public/slst/home/chusy2024/RNA/nextflow-24.04.1-all, [nf-amazon-2.5.2.jar, nextflow-24.04.1.jar, ivy-2.5.2.jar, nf-httpfs-24.04.1.jar, jaxb-api-2.4.0-b180830.0359.jar, aws-java-sdk-s3-1.12.604.jar, aws-java-sdk-ec2-1.12.604.jar, aws-java-sdk-batch-1.12.604.jar, aws-java-sdk-iam-1.12.604.jar, aws-java-sdk-ecs-1.12.604.jar, aws-java-sdk-logs-1.12.604.jar, aws-java-sdk-codecommit-1.12.604.jar, aws-java-sdk-sts-1.12.604.jar, aws-java-sdk-ses-1.12.604.jar, sso-2.20.89.jar, ssooidc-2.20.89.jar, nf-commons-24.04.1.jar, groovy-nio-4.0.21.jar, groovy-templates-4.0.21.jar, groovy-xml-4.0.21.jar, groovy-json-4.0.21.jar, groovy-4.0.21.jar, groovy-yaml-4.0.21.jar, aws-java-sdk-kms-1.12.604.jar, aws-java-sdk-core-1.12.604.jar, jmespath-java-1.12.604.jar, jackson-dataformat-cbor-2.17.0.jar, jackson-core-2.17.0.jar, jackson-annotations-2.17.0.jar, jackson-dataformat-yaml-2.17.0.jar, jackson-databind-2.17.0.jar, apache-client-2.20.89.jar, httpclient-4.5.13.jar, jcl-over-slf4j-2.0.7.jar, jul-to-slf4j-2.0.7.jar, log4j-over-slf4j-2.0.7.jar, logback-classic-1.4.14.jar, logback-core-1.4.14.jar, gpars-1.2.1.jar, grengine-3.0.2.jar, commons-lang-2.6.jar, pf4j-update-2.3.0.jar, commons-codec-1.15.jar, commons-io-2.11.0.jar, jcommander-1.35.jar, kryo-2.24.0.jar, leveldb-0.12.jar, org.eclipse.jgit-6.6.1.202309021850-r.jar, mail-1.4.7.jar, activation-1.1.1.jar, snakeyaml-2.2.jar, jsoup-1.15.4.jar, jline-2.9.jar, pf4j-3.10.0.jar, failsafe-3.1.0.jar, javax.activation-api-1.2.0.jar, aws-json-protocol-2.20.89.jar, protocol-core-2.20.89.jar, aws-core-2.20.89.jar, auth-2.20.89.jar, regions-2.20.89.jar, json-utils-2.20.89.jar, sdk-core-2.20.89.jar, profiles-2.20.89.jar, netty-nio-client-2.20.89.jar, http-client-spi-2.20.89.jar, metrics-spi-2.20.89.jar, utils-2.20.89.jar, endpoints-spi-2.20.89.jar, annotations-2.20.89.jar, third-party-jackson-core-2.20.89.jar, guava-33.0.0-jre.jar, gson-2.10.1.jar, slf4j-api-2.0.7.jar, multiverse-core-0.7.0.jar, jsr166y-1.7.0.jar, objenesis-2.1.jar, leveldb-api-0.12.jar, JavaEWAH-1.2.3.jar, java-semver-0.9.0.jar, ion-java-1.0.2.jar, joda-time-2.8.1.jar, reactive-streams-1.0.3.jar, eventstream-1.0.1.jar, httpcore-4.4.13.jar, netty-codec-http2-4.1.86.Final.jar, netty-codec-http-4.1.86.Final.jar, netty-handler-4.1.86.Final.jar, netty-codec-4.1.86.Final.jar, netty-transport-classes-epoll-4.1.86.Final.jar, netty-transport-native-unix-common-4.1.86.Final.jar, netty-transport-4.1.86.Final.jar, netty-buffer-4.1.86.Final.jar, netty-resolver-4.1.86.Final.jar, netty-common-4.1.86.Final.jar, failureaccess-1.0.2.jar, listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar, jsr305-3.0.2.jar, checker-qual-3.41.0.jar, error_prone_annotations-2.23.0.jar, byte-buddy-1.14.9.jar, nf-google-1.13.2.jar, google-cloud-batch-0.29.0.jar, google-cloud-logging-3.8.0.jar, google-cloud-nio-0.124.8.jar, google-cloud-storage-2.9.3.jar, google-cloud-core-2.8.0.jar, gax-2.36.0.jar, google-auth-library-oauth2-http-1.20.0.jar, google-api-services-lifesciences-v2beta-rev20210527-1.31.5.jar, google-api-services-storage-v1-rev20220705-1.32.1.jar, google-api-client-1.35.1.jar, google-oauth-client-1.34.1.jar, google-http-client-gson-1.43.3.jar, google-http-client-apache-v2-1.42.0.jar, google-http-client-1.43.3.jar, httpclient-4.5.14.jar, commons-codec-1.16.0.jar, gax-grpc-2.36.0.jar, grpc-inprocess-1.58.0.jar, grpc-services-1.58.0.jar, grpc-util-1.58.0.jar, grpc-core-1.58.0.jar, protobuf-java-util-3.24.4.jar, opencensus-contrib-http-util-0.31.1.jar, api-common-2.19.0.jar, proto-google-cloud-batch-v1alpha-0.29.0.jar, proto-google-cloud-batch-v1-0.29.0.jar, proto-google-cloud-logging-v2-0.97.0.jar, auto-value-annotations-1.10.4.jar, opencensus-api-0.31.1.jar, grpc-context-1.58.0.jar, grpc-api-1.58.0.jar, google-auth-library-credentials-1.20.0.jar, google-http-client-jackson2-1.42.0.jar, grpc-stub-1.58.0.jar, grpc-protobuf-1.58.0.jar, grpc-protobuf-lite-1.58.0.jar, javax.annotation-api-1.3.2.jar, proto-google-iam-v1-1.22.0.jar, proto-google-common-protos-2.27.0.jar, protobuf-java-3.24.4.jar, grpc-google-common-protos-2.27.0.jar, j2objc-annotations-2.8.jar, grpc-google-iam-v1-1.22.0.jar, annotations-4.1.1.4.jar, animal-sniffer-annotations-1.23.jar, grpc-alts-1.58.0.jar, grpc-grpclb-1.58.0.jar, conscrypt-openjdk-uber-2.5.2.jar, grpc-auth-1.58.0.jar, grpc-netty-shaded-1.58.0.jar, perfmark-api-0.26.0.jar, grpc-googleapis-1.58.0.jar, grpc-xds-1.58.0.jar, opencensus-proto-0.2.0.jar, re2j-1.7.jar, gax-httpjson-2.36.0.jar, httpcore-4.4.16.jar, threetenbp-1.6.8.jar, bcpkix-jdk15on-1.67.jar, bcprov-jdk15on-1.67.jar, google-cloud-core-grpc-2.6.0.jar, javax.inject-1.jar, google-cloud-core-http-2.8.0.jar, google-http-client-appengine-1.42.0.jar, nf-tower-1.9.1.jar, nf-wave-1.4.2.jar, wave-utils-0.12.1.jar, commons-compress-1.26.1.jar, commons-codec-1.16.1.jar, commons-io-2.15.1.jar, commons-lang3-3.14.0.jar, wave-api-0.9.1.jar, moshi-adapters-1.14.0.jar, moshi-1.14.0.jar, okio-jvm-2.10.0.jar, kotlin-stdlib-jdk8-1.7.0.jar, kotlin-stdlib-jdk7-1.7.0.jar, kotlin-stdlib-1.7.0.jar, kotlin-stdlib-common-1.7.0.jar, annotations-13.0.jar]] (for stack trace, run with -Dcapsule.log=verbose)
Unable to initialize nextflow environment

Here is the normal nextflow
(RNA) [chusy2024@hpc-login RNA]$ "/public/slst/home/chusy2024/RNA/nextflow"
Usage: nextflow [options] COMMAND [arg...]

Options:
-C
Use the specified configuration file(s) overriding any defaults
-D
Set JVM properties
-bg
Execute nextflow in background
-c, -config
Add the specified file to configuration set
-config-ignore-includes
Disable the parsing of config includes
-h
Print this help
-log
Set nextflow log file path
-q, -quiet
Do not print information messages
-remote-debug
Enable JVM interactive remote debugging (experimental)
-syslog
Send logs to syslog server (eg. localhost:514)
-trace
Enable trace level logging for the specified package name - multiple packages can be provided separating them with a comma e.g. '-trace nextflow,io.seqera'
-v, -version
Print the program version

Commands:
clean Clean up project cache and work directories
clone Clone a project into a folder
config Print a project configuration
console Launch Nextflow interactive console
drop Delete the local copy of a project
help Print the usage help for a command
info Print project and system runtime information
inspect Inspect process settings in a pipeline project
kuberun Execute a workflow in a Kubernetes cluster (experimental)
list List all downloaded projects
log Print executions log and runtime info
plugin Execute plugin-specific commands
pull Download or update a project
run Execute a pipeline project
secrets Manage pipeline secrets
self-update Update nextflow runtime to the latest available version
view View project script file(s)

This is my java situation
(RNA) [chusy2024@hpc-login RNA]$ java -version
openjdk version "17.0.10-internal" 2024-01-16
OpenJDK Runtime Environment (build 17.0.10-internal+0-adhoc..src)
OpenJDK 64-Bit Server VM (build 17.0.10-internal+0-adhoc..src, mixed mode, sharing)

Environment

• Nextflow version: [24.04.1]
• Java version: [17.0.10]
• Operating system: [Linux, ]
• Bash version: (4.2.46(2)`)

Additional context

(Add any other context about the problem here)

[pditommaso]

Consider upgrading latest stable release. Look -dist instead of -all package