chore(gitignore): reorganise lists of ignored files/directories

Signed-off-by: Qin Yu <qin.yu.95@outlook.com>

Author: qin-yu

.gitignore

@@ -1,46 +1,73 @@
+# IDE and Editor
+.devcontainer/
 .idea/
+.vscode/
+modules/**/*.iml
+nextflow.eml
+nextflow.iml
+
+# Build System
 .gradle/
-.*.log*
-.cache/
-.vagrant/
+.launch.classpath
+**/build/
+**/out/
+
+# Nextflow Runtime
+.lineage/
 .nextflow*
 .node-nextflow*
-.devcontainer/
-.vscode/
-.lineage/
-*/*/bin/
-**/build/
-modules/**/*.iml
 modules/nextflow/work/
-**/out/
-tmp/
 work/
-nextflow.eml
-nextflow.iml
+
+# Logs and Cache
+.*.log*
+.cache/
+
+# Temporary Files
+temp/
+tmp/
+
+# Development and Testing
+.vagrant/
 Vagrantfile
-resources/
-test/
-tools/
-tests_other/
-other/
-docs/_build/
-/*.txt
-!changelog.txt
+docker-test/
 errors/
 misc/
-cloud/my-*
-docker-test/
+other/
+tests_other/
+
+# Docker Artifacts
+.dockerignore
 docker/dist/
 docker/nextflow
-temp/
-.dockerignore
-.launch.classpath
+
+# Cloud Configuration
+cloud/my-*
+
+# Documentation
+docs/_build/
+
+# Build and Distribution
+*/*/bin/
 plugins-prod/
+
+# Project-Specific Directories
 /minio/
+/results/
 /sandbox/
-/wave-tests/
-/test-sched/
 /test-module/
-/results/
+/test-sched/
+/wave-tests/
 /x/
+
+# Broad Patterns
+resources/
+test/
+tools/
+
+# Root-Level Text Files
+/*.txt
+!changelog.txt
+
+# Configuration
 mise.toml