From 96104af19e3e3be190d70ff5284ffde3ec94c16f Mon Sep 17 00:00:00 2001
From: ivan-aksamentov <ivan.aksamentov@gmail.com>
Date: Sat, 20 Sep 2025 02:45:34 +0200
Subject: [PATCH 1/6] chore: upgrade deps

Upgrade all deps except `noodles`, which has unreasonable amount of changes and everything becomes broken. We should try and upgrade it too sometimes.
---
 Cargo.lock                       | 1316 +++++++++++++++++-------------
 Cargo.toml                       |   64 +-
 packages/minimap2-sys/Cargo.toml |    7 +-
 3 files changed, 802 insertions(+), 585 deletions(-)

diff --git a/Cargo.lock b/Cargo.lock
index b69d280f..ae144f47 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -4,24 +4,18 @@ version = 4
 
 [[package]]
 name = "addr2line"
-version = "0.21.0"
+version = "0.24.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8a30b2e23b9e17a9f90641c7ab1549cd9b44f296d3ccbf309d2863cfe398a0cb"
+checksum = "dfbe277e56a376000877090da837660b4427aad530e3028d44e0bffe4f89a1c1"
 dependencies = [
  "gimli",
 ]
 
-[[package]]
-name = "adler"
-version = "1.0.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe"
-
 [[package]]
 name = "adler2"
-version = "2.0.0"
+version = "2.0.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "512761e0bb2578dd7380c6baaa0f4ce03e84f95e960231d1dec8bf4d7d6e2627"
+checksum = "320119579fcad9c21884f5c4861d16174d0e06250625266f50fe6898340abefa"
 
 [[package]]
 name = "aho-corasick"
@@ -33,10 +27,10 @@ dependencies = [
 ]
 
 [[package]]
-name = "android-tzdata"
-version = "0.1.1"
+name = "allocator-api2"
+version = "0.2.21"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e999941b234f3131b00bc13c22d06e8c5ff726d1b6318ac7eb276997bbb4fef0"
+checksum = "683d7910e743518b0e34f1186f92494becacb047c7b6bf616c96772180fef923"
 
 [[package]]
 name = "android_system_properties"
@@ -49,9 +43,9 @@ dependencies = [
 
 [[package]]
 name = "anstream"
-version = "0.6.18"
+version = "0.6.20"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8acc5369981196006228e28809f761875c0327210a891e941f4c683b3a99529b"
+checksum = "3ae563653d1938f79b1ab1b5e668c87c76a9930414574a6583a7b7e11a8e6192"
 dependencies = [
  "anstyle",
  "anstyle-parse",
@@ -64,44 +58,44 @@ dependencies = [
 
 [[package]]
 name = "anstyle"
-version = "1.0.10"
+version = "1.0.11"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "55cc3b69f167a1ef2e161439aa98aed94e6028e5f9a59be9a6ffb47aef1651f9"
+checksum = "862ed96ca487e809f1c8e5a8447f6ee2cf102f846893800b20cebdf541fc6bbd"
 
 [[package]]
 name = "anstyle-parse"
-version = "0.2.6"
+version = "0.2.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3b2d16507662817a6a20a9ea92df6652ee4f94f914589377d69f3b21bc5798a9"
+checksum = "4e7644824f0aa2c7b9384579234ef10eb7efb6a0deb83f9630a49594dd9c15c2"
 dependencies = [
  "utf8parse",
 ]
 
 [[package]]
 name = "anstyle-query"
-version = "1.1.2"
+version = "1.1.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "79947af37f4177cfead1110013d678905c37501914fba0efea834c3fe9a8d60c"
+checksum = "9e231f6134f61b71076a3eab506c379d4f36122f2af15a9ff04415ea4c3339e2"
 dependencies = [
- "windows-sys",
+ "windows-sys 0.60.2",
 ]
 
 [[package]]
 name = "anstyle-wincon"
-version = "3.0.7"
+version = "3.0.10"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ca3534e77181a9cc07539ad51f2141fe32f6c3ffd4df76db8ad92346b003ae4e"
+checksum = "3e0633414522a32ffaac8ac6cc8f748e090c5717661fddeea04219e2344f5f2a"
 dependencies = [
  "anstyle",
- "once_cell",
- "windows-sys",
+ "once_cell_polyfill",
+ "windows-sys 0.60.2",
 ]
 
 [[package]]
 name = "anyhow"
-version = "1.0.96"
+version = "1.0.100"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6b964d184e89d9b6b67dd2715bc8e74cf3107fb2b529990c90cf517326150bf4"
+checksum = "a23eb6b1614318a8071c9b2521f36b424b2c83db5eb3a0fead4a6c0809af6e61"
 
 [[package]]
 name = "approx"
@@ -131,50 +125,50 @@ checksum = "7460f7dd8e100147b82a63afca1a20eb6c231ee36b90ba7272e14951cb58af59"
 
 [[package]]
 name = "autocfg"
-version = "1.4.0"
+version = "1.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ace50bade8e6234aa140d9a2f552bbee1db4d353f69b8217bc503490fc1a9f26"
+checksum = "c08606f8c3cbf4ce6ec8e28fb0014a2c086708fe954eaa885384a6165172e7e8"
 
 [[package]]
 name = "backtrace"
-version = "0.3.71"
+version = "0.3.75"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "26b05800d2e817c8b3b4b54abd461726265fa9789ae34330622f2db9ee696f9d"
+checksum = "6806a6321ec58106fea15becdad98371e28d92ccbc7c8f1b3b6dd724fe8f1002"
 dependencies = [
  "addr2line",
- "cc",
  "cfg-if",
  "libc",
- "miniz_oxide 0.7.4",
+ "miniz_oxide",
  "object",
  "rustc-demangle",
+ "windows-targets 0.52.6",
 ]
 
 [[package]]
 name = "bindgen"
-version = "0.71.1"
+version = "0.72.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5f58bf3d7db68cfbac37cfc485a8d711e87e064c3d0fe0435b92f7a407f9d6b3"
+checksum = "993776b509cfb49c750f11b8f07a46fa23e0a1386ffc01fb1e7d343efc387895"
 dependencies = [
- "bitflags 2.8.0",
+ "bitflags 2.9.4",
  "cexpr",
  "clang-sys",
  "itertools 0.13.0",
  "log",
  "prettyplease",
- "proc-macro2",
- "quote",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
  "regex",
  "rustc-hash",
  "shlex",
- "syn",
+ "syn 2.0.106",
 ]
 
 [[package]]
 name = "bio"
-version = "2.0.3"
+version = "3.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d563b9298d39b3bdb5c45f6e91e0bdcb18d67e6d8fa034a733b7283f2db5ed29"
+checksum = "2169c40f17068bcf0563e5060ed6ccab694f68068133055f6e96bcdf987b3f32"
 dependencies = [
  "anyhow",
  "approx",
@@ -184,27 +178,27 @@ dependencies = [
  "bytecount",
  "csv",
  "custom_derive",
+ "derefable",
  "editdistancek",
  "enum-map",
  "fxhash",
- "itertools 0.13.0",
+ "getset",
+ "itertools 0.14.0",
  "itertools-num",
- "lazy_static",
  "multimap",
  "ndarray",
  "newtype_derive",
  "num-integer",
  "num-traits",
- "ordered-float 4.6.0",
- "petgraph",
- "rand 0.8.5",
+ "ordered-float 5.0.0",
+ "petgraph 0.8.2",
  "regex",
  "serde",
  "serde_derive",
  "statrs",
  "strum 0.26.3",
  "strum_macros 0.26.4",
- "thiserror",
+ "thiserror 2.0.16",
  "triple_accel",
  "vec_map",
 ]
@@ -219,7 +213,7 @@ dependencies = [
  "lazy_static",
  "regex",
  "strum_macros 0.26.4",
- "thiserror",
+ "thiserror 1.0.69",
 ]
 
 [[package]]
@@ -260,15 +254,15 @@ checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a"
 
 [[package]]
 name = "bitflags"
-version = "2.8.0"
+version = "2.9.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8f68f53c83ab957f72c32642f3868eec03eb974d1fb82e453128456482613d36"
+checksum = "2261d10cca569e4643e526d8dc2e62e433cc8aba21ab764233731f8d369bf394"
 
 [[package]]
 name = "bumpalo"
-version = "3.17.0"
+version = "3.19.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1628fb46dfa0b37568d12e5edd512553eccf6a22a78e8bde00bb4aed84d5bdbf"
+checksum = "46c5e41b57b8bba42a04676d81cb89e9ee8e859a1a66f80a5a72e1cb76b34d43"
 
 [[package]]
 name = "bv"
@@ -282,15 +276,15 @@ dependencies = [
 
 [[package]]
 name = "bytecount"
-version = "0.6.8"
+version = "0.6.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5ce89b21cab1437276d2650d57e971f9d548a2d9037cc231abdc0562b97498ce"
+checksum = "175812e0be2bccb6abe50bb8d566126198344f707e304f45c648fd8f2cc0365e"
 
 [[package]]
 name = "bytemuck"
-version = "1.21.0"
+version = "1.23.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ef657dfab802224e671f5818e9a4935f9b1957ed18e58292690cc39e7a4092a3"
+checksum = "3995eaeebcdf32f91f980d360f78732ddc061097ab4e39991ae7a6ace9194677"
 
 [[package]]
 name = "byteorder"
@@ -300,27 +294,27 @@ checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b"
 
 [[package]]
 name = "bytes"
-version = "1.10.0"
+version = "1.10.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f61dac84819c6588b558454b194026eb1f09c293b9036ae9b159e74e73ab6cf9"
+checksum = "d71b6127be86fdcfddb610f7182ac57211d4b18a3e9c82eb2d17662f2227ad6a"
 
 [[package]]
 name = "bzip2"
-version = "0.5.1"
+version = "0.6.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "75b89e7c29231c673a61a46e722602bcd138298f6b9e81e71119693534585f5c"
+checksum = "bea8dcd42434048e4f7a304411d9273a411f647446c1234a65ce0554923f4cff"
 dependencies = [
  "bzip2-sys",
+ "libbz2-rs-sys",
 ]
 
 [[package]]
 name = "bzip2-sys"
-version = "0.1.12+1.0.8"
+version = "0.1.13+1.0.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "72ebc2f1a417f01e1da30ef264ee86ae31d2dcd2d603ea283d3c244a883ca2a9"
+checksum = "225bff33b2141874fe80d71e07d6eec4f85c5c216453dd96388240f96e1acc14"
 dependencies = [
  "cc",
- "libc",
  "pkg-config",
 ]
 
@@ -335,10 +329,11 @@ dependencies = [
 
 [[package]]
 name = "cc"
-version = "1.2.15"
+version = "1.2.38"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c736e259eea577f443d5c86c304f9f4ae0295c43f3ba05c21f1d66b5f06001af"
+checksum = "80f41ae168f955c12fb8960b057d70d0ca153fb83182b57d86380443527be7e9"
 dependencies = [
+ "find-msvc-tools",
  "jobserver",
  "libc",
  "shlex",
@@ -355,22 +350,21 @@ dependencies = [
 
 [[package]]
 name = "cfg-if"
-version = "1.0.0"
+version = "1.0.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
+checksum = "2fd1289c04a9ea8cb22300a459a72a385d7c73d3259e2ed7dcb2af674838cfa9"
 
 [[package]]
 name = "chrono"
-version = "0.4.39"
+version = "0.4.42"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7e36cc9d416881d2e24f9a963be5fb1cd90966419ac844274161d10488b3e825"
+checksum = "145052bdd345b87320e369255277e3fb5152762ad123a901ef5c262dd38fe8d2"
 dependencies = [
- "android-tzdata",
  "iana-time-zone",
  "js-sys",
  "num-traits",
  "wasm-bindgen",
- "windows-targets",
+ "windows-link 0.2.0",
 ]
 
 [[package]]
@@ -386,9 +380,9 @@ dependencies = [
 
 [[package]]
 name = "clap"
-version = "4.5.30"
+version = "4.5.48"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "92b7b18d71fad5313a1e320fa9897994228ce274b60faa4d694fe0ea89cd9e6d"
+checksum = "e2134bb3ea021b78629caa971416385309e0131b351b25e01dc16fb54e1b5fae"
 dependencies = [
  "clap_builder",
  "clap_derive",
@@ -396,18 +390,18 @@ dependencies = [
 
 [[package]]
 name = "clap-markdown"
-version = "0.1.4"
+version = "0.1.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8ebc67e6266e14f8b31541c2f204724fa2ac7ad5c17d6f5908fbb92a60f42cff"
+checksum = "d2a2617956a06d4885b490697b5307ebb09fec10b088afc18c81762d848c2339"
 dependencies = [
  "clap",
 ]
 
 [[package]]
 name = "clap_builder"
-version = "4.5.30"
+version = "4.5.48"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a35db2071778a7344791a4fb4f95308b5673d219dee3ae348b86642574ecc90c"
+checksum = "c2ba64afa3c0a6df7fa517765e31314e983f51dda798ffba27b988194fb65dc9"
 dependencies = [
  "anstream",
  "anstyle",
@@ -419,9 +413,9 @@ dependencies = [
 
 [[package]]
 name = "clap_complete"
-version = "4.5.45"
+version = "4.5.58"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1e3040c8291884ddf39445dc033c70abc2bc44a42f0a3a00571a0f483a83f0cd"
+checksum = "75bf0b32ad2e152de789bb635ea4d3078f6b838ad7974143e99b99f45a04af4a"
 dependencies = [
  "clap",
 ]
@@ -438,21 +432,21 @@ dependencies = [
 
 [[package]]
 name = "clap_derive"
-version = "4.5.28"
+version = "4.5.47"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bf4ced95c6f4a675af3da73304b9ac4ed991640c36374e4b46795c49e17cf1ed"
+checksum = "bbfd7eae0b0f1a6e63d4b13c9c478de77c2eb546fba158ad50b4203dc24b9f9c"
 dependencies = [
  "heck",
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
 name = "clap_lex"
-version = "0.7.4"
+version = "0.7.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f46ad14479a25103f283c0f10005961cf086d8dc42205bb44c46ac563475dca6"
+checksum = "b94f61472cee1439c0b966b47e3aca9ae07e45d070759512cd390ea2bebc6675"
 
 [[package]]
 name = "cmake"
@@ -465,35 +459,34 @@ dependencies = [
 
 [[package]]
 name = "cmd_lib"
-version = "1.9.5"
+version = "2.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "371c15a3c178d0117091bd84414545309ca979555b1aad573ef591ad58818d41"
+checksum = "1e1ac603509ec7e9696f35e836365c53f305040b1080dabcde26e00e58b264a7"
 dependencies = [
  "cmd_lib_macros",
- "env_logger 0.10.2",
+ "env_logger",
  "faccess",
- "lazy_static",
  "log",
  "os_pipe",
 ]
 
 [[package]]
 name = "cmd_lib_macros"
-version = "1.9.5"
+version = "2.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cb844bd05be34d91eb67101329aeba9d3337094c04fd8507d821db7ebb488eaf"
+checksum = "2f213802401c6631f4ff5b3bfc40f07f01a431c53d736ab42a6d0d65be3e0266"
 dependencies = [
  "proc-macro-error2",
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
 name = "color-eyre"
-version = "0.6.3"
+version = "0.6.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "55146f5e46f237f7423d74111267d4597b59b0dad0ffaf7303bce9945d843ad5"
+checksum = "e5920befb47832a6d61ee3a3a846565cfa39b331331e68a3b1d1116630f2f26d"
 dependencies = [
  "backtrace",
  "color-spantrace",
@@ -506,9 +499,9 @@ dependencies = [
 
 [[package]]
 name = "color-spantrace"
-version = "0.2.1"
+version = "0.3.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cd6be1b2a7e382e2b98b43b2adcca6bb0e465af0bdd38123873ae61eb17a72c2"
+checksum = "b8b88ea9df13354b55bc7234ebcce36e6ef896aca2e42a15de9e10edce01b427"
 dependencies = [
  "once_cell",
  "owo-colors",
@@ -518,21 +511,21 @@ dependencies = [
 
 [[package]]
 name = "colorchoice"
-version = "1.0.3"
+version = "1.0.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5b63caa9aa9397e2d9480a9b13673856c78d8ac123288526c37d7839f2a86990"
+checksum = "b05b61dc5112cbb17e4b6cd61790d9845d13888356391624cbe7e41efeac1e75"
 
 [[package]]
 name = "console"
-version = "0.15.10"
+version = "0.16.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ea3c6ecd8059b57859df5c69830340ed3c41d30e3da0c1cbed90a96ac853041b"
+checksum = "b430743a6eb14e9764d4260d4c0d8123087d504eeb9c48f2b2a5e810dd369df4"
 dependencies = [
  "encode_unicode",
  "libc",
  "once_cell",
  "unicode-width",
- "windows-sys",
+ "windows-sys 0.61.0",
 ]
 
 [[package]]
@@ -552,18 +545,18 @@ checksum = "773648b94d0e5d620f64f280777445740e61fe701025087ec8b57f45c791888b"
 
 [[package]]
 name = "crc32fast"
-version = "1.4.2"
+version = "1.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a97769d94ddab943e4510d138150169a2758b5ef3eb191a9ee688de3e23ef7b3"
+checksum = "9481c1c90cbf2ac953f07c8d4a58aa3945c425b7185c9154d67a65e4230da511"
 dependencies = [
  "cfg-if",
 ]
 
 [[package]]
 name = "crossbeam-channel"
-version = "0.5.14"
+version = "0.5.15"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "06ba6d68e24814cb8de6bb986db8222d3a027d15872cabc0d18817bc3c0e4471"
+checksum = "82b8f8f868b36967f9606790d1903570de9ceaf870a7bf9fbbd3016d636a2cb2"
 dependencies = [
  "crossbeam-utils",
 ]
@@ -616,18 +609,19 @@ dependencies = [
 
 [[package]]
 name = "ctor"
-version = "0.3.6"
+version = "0.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "21d960ecacd0a1bf55e73144b72de745e7bf275c7952c50e36e8af0a0cb7ab1f"
+checksum = "67773048316103656a637612c4a62477603b777d91d9c62ff2290f9cde178fdb"
 dependencies = [
  "ctor-proc-macro",
+ "dtor",
 ]
 
 [[package]]
 name = "ctor-proc-macro"
-version = "0.0.4"
+version = "0.0.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c426d2ba3e525b39c1f0a9ba41b9fe61878dee11fa4e4a76b6ab440f46c5db5d"
+checksum = "e2931af7e13dc045d8e9d26afccc6fa115d64e115c9c84b1166288b46f6782c2"
 
 [[package]]
 name = "custom_derive"
@@ -635,15 +629,26 @@ version = "0.1.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "ef8ae57c4978a2acd8b869ce6b9ca1dfe817bff704c220209fdef2c0b75a01b9"
 
+[[package]]
+name = "derefable"
+version = "0.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "e519abf1289075763071c981958e89948b079fc54962617a0e6413d9ce44cbe7"
+dependencies = [
+ "proc-macro2 0.4.30",
+ "quote 0.6.13",
+ "syn 0.15.44",
+]
+
 [[package]]
 name = "derive-new"
 version = "0.6.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "d150dea618e920167e5973d70ae6ece4385b7164e0d799fe7c122dd0a5d912ad"
 dependencies = [
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
@@ -662,10 +667,10 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "bda628edc44c4bb645fbe0f758797143e4e07926f7ebf4e9bdfbd3d2ce621df3"
 dependencies = [
  "convert_case",
- "proc-macro2",
- "quote",
- "syn",
- "unicode-xid",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
+ "unicode-xid 0.2.6",
 ]
 
 [[package]]
@@ -674,11 +679,26 @@ version = "0.1.13"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "56254986775e3233ffa9c4d7d3faaf6d36a2c09d30b20687e9f88bc8bafc16c8"
 
+[[package]]
+name = "dtor"
+version = "0.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "e58a0764cddb55ab28955347b45be00ade43d4d6f3ba4bf3dc354e4ec9432934"
+dependencies = [
+ "dtor-proc-macro",
+]
+
+[[package]]
+name = "dtor-proc-macro"
+version = "0.0.6"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "f678cf4a922c215c63e0de95eb1ff08a958a81d47e485cf9da1e27bf6305cfa5"
+
 [[package]]
 name = "dyn-clone"
-version = "1.0.18"
+version = "1.0.20"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "feeef44e73baff3a26d371801df019877a9866a8c493d315ab00177843314f35"
+checksum = "d0881ea181b1df73ff77ffaaf9c7544ecc11e82fba9b5f27b262a3c73a332555"
 
 [[package]]
 name = "editdistancek"
@@ -688,9 +708,9 @@ checksum = "3e02df23d5b1c6f9e69fa603b890378123b93073df998a21e6e33b9db0a32613"
 
 [[package]]
 name = "either"
-version = "1.13.0"
+version = "1.15.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "60b1af1c220855b6ceac025d3f6ecdd2b7c4894bfe9cd9bda4fbb4bc7c0d4cf0"
+checksum = "48c757948c5ede0e46177b7add2e67155f70e33c07fea8284df6576da70b3719"
 
 [[package]]
 name = "encode_unicode"
@@ -713,9 +733,9 @@ version = "0.17.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "f282cfdfe92516eb26c2af8589c274c7c17681f5ecc03c18255fe741c6aa64eb"
 dependencies = [
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
@@ -730,27 +750,14 @@ dependencies = [
 
 [[package]]
 name = "env_logger"
-version = "0.10.2"
+version = "0.11.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4cd405aab171cb85d6735e5c8d9db038c17d3ca007a4d2c25f337935c3d90580"
-dependencies = [
- "humantime",
- "is-terminal",
- "log",
- "regex",
- "termcolor",
-]
-
-[[package]]
-name = "env_logger"
-version = "0.11.6"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dcaee3d8e3cfc3fd92428d477bc97fc29ec8716d180c0d74c643bb26166660e0"
+checksum = "13c863f0904021b108aa8b2f55046443e6b1ebde8fd4a15c399893aae4fa069f"
 dependencies = [
  "anstream",
  "anstyle",
  "env_filter",
- "humantime",
+ "jiff",
  "log",
 ]
 
@@ -762,12 +769,12 @@ checksum = "877a4ace8713b0bcf2a4e7eec82529c029f1d0619886d18145fea96c3ffe5c0f"
 
 [[package]]
 name = "errno"
-version = "0.3.10"
+version = "0.3.14"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "33d852cb9b869c2a9b3df2f71a3074817f01e1844f839a144f5fcef059a4eb5d"
+checksum = "39cab71617ae0d63f51a36d69f866391735b51691dbda63cf6f96d042b63efeb"
 dependencies = [
  "libc",
- "windows-sys",
+ "windows-sys 0.61.0",
 ]
 
 [[package]]
@@ -803,22 +810,40 @@ version = "0.1.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "835a3dc7d1ec9e75e2b5fb4ba75396837112d2060b03f7d43bc1897c7f7211da"
 
+[[package]]
+name = "find-msvc-tools"
+version = "0.1.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "1ced73b1dacfc750a6db6c0a0c3a3853c8b41997e2e2c563dc90804ae6867959"
+
 [[package]]
 name = "fixedbitset"
 version = "0.4.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "0ce7134b9999ecaf8bcd65542e436736ef32ddca1b3e06094cb6ec5755203b80"
 
+[[package]]
+name = "fixedbitset"
+version = "0.5.7"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "1d674e81391d1e1ab681a28d99df07927c6d4aa5b027d7da16ba32d1d21ecd99"
+
 [[package]]
 name = "flate2"
-version = "1.1.0"
+version = "1.1.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "11faaf5a5236997af9848be0bef4db95824b1d534ebc64d0f0c6cf3e67bd38dc"
+checksum = "4a3d7db9596fecd151c5f638c0ee5d5bd487b6e0ea232e5dc96d5250f6f94b1d"
 dependencies = [
  "crc32fast",
- "miniz_oxide 0.8.4",
+ "miniz_oxide",
 ]
 
+[[package]]
+name = "foldhash"
+version = "0.1.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d9c4f5dac5e15c24eb999c26181a6ca40b39fe946cbe4c263c7209467bc83af2"
+
 [[package]]
 name = "futures-core"
 version = "0.3.31"
@@ -831,9 +856,9 @@ version = "0.3.31"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "162ee34ebcb7c64a8abebc059ce0fee27c2262618d7b60ed8faf72fef13c3650"
 dependencies = [
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
@@ -885,56 +910,67 @@ dependencies = [
 
 [[package]]
 name = "getrandom"
-version = "0.2.15"
+version = "0.2.16"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c4567c8db10ae91089c99af84c68c38da3ec2f087c3f82960bcdbf3656b6f4d7"
+checksum = "335ff9f135e4384c8150d6f27c6daed433577f86b4750418338c01a1a2528592"
 dependencies = [
  "cfg-if",
  "libc",
- "wasi 0.11.0+wasi-snapshot-preview1",
+ "wasi 0.11.1+wasi-snapshot-preview1",
 ]
 
 [[package]]
 name = "getrandom"
-version = "0.3.1"
+version = "0.3.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "43a49c392881ce6d5c3b8cb70f98717b7c07aabbdff06687b9030dbfbe2725f8"
+checksum = "26145e563e54f2cadc477553f1ec5ee650b00862f0a58bcd12cbdc5f0ea2d2f4"
 dependencies = [
  "cfg-if",
  "libc",
- "wasi 0.13.3+wasi-0.2.2",
- "windows-targets",
+ "r-efi",
+ "wasi 0.14.7+wasi-0.2.4",
 ]
 
 [[package]]
 name = "getset"
-version = "0.1.4"
+version = "0.1.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "eded738faa0e88d3abc9d1a13cb11adc2073c400969eeb8793cf7132589959fc"
+checksum = "9cf0fc11e47561d47397154977bc219f4cf809b2974facc3ccb3b89e2436f912"
 dependencies = [
  "proc-macro-error2",
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
 name = "gimli"
-version = "0.28.1"
+version = "0.31.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4271d37baee1b8c7e4b708028c57d816cf9d2434acb33a549475f78c181f6253"
+checksum = "07e28edb80900c19c28f1072f2e8aeca7fa06b23cd4169cefe1af5aa3260783f"
 
 [[package]]
 name = "glob"
-version = "0.3.2"
+version = "0.3.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a8d1add55171497b4705a648c6b583acafb01d58050a51727785f0b2c8e0a2b2"
+checksum = "0cc23270f6e1808e30a928bdc84dea0b9b4136a8bc82338574f23baf47bbd280"
+
+[[package]]
+name = "hashbrown"
+version = "0.15.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "9229cfe53dfd69f0609a49f65461bd93001ea1ef889cd5529dd176593f5338a1"
+dependencies = [
+ "allocator-api2",
+ "equivalent",
+ "foldhash",
+]
 
 [[package]]
 name = "hashbrown"
-version = "0.15.2"
+version = "0.16.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bf151400ff0baff5465007dd2f3e717f3fe502074ca563069ce3a6629d07b289"
+checksum = "5419bdc4f6a9207fbeba6d11b604d481addf78ecd10c11ad51e76c2f6482748d"
 
 [[package]]
 name = "heck"
@@ -953,32 +989,21 @@ dependencies = [
 
 [[package]]
 name = "hermit-abi"
-version = "0.3.9"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d231dfb89cfffdbc30e7fc41579ed6066ad03abda9e567ccafae602b97ec5024"
-
-[[package]]
-name = "hermit-abi"
-version = "0.4.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fbf6a919d6cf397374f7dfeeea91d974c7c0a7221d0d0f4f20d859d329e53fcc"
-
-[[package]]
-name = "humantime"
-version = "2.1.0"
+version = "0.5.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9a3a5bfb195931eeb336b2a7b4d761daec841b97f947d34394601737a7bba5e4"
+checksum = "fc0fef456e4baa96da950455cd02c081ca953b141298e41db3fc7e36b1da849c"
 
 [[package]]
 name = "iana-time-zone"
-version = "0.1.61"
+version = "0.1.64"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "235e081f3925a06703c2d0117ea8b91f042756fd6e7a6e5d901e8ca1a996b220"
+checksum = "33e57f83510bb73707521ebaffa789ec8caf86f9657cad665b092b581d40e9fb"
 dependencies = [
  "android_system_properties",
  "core-foundation-sys",
  "iana-time-zone-haiku",
  "js-sys",
+ "log",
  "wasm-bindgen",
  "windows-core",
 ]
@@ -994,30 +1019,30 @@ dependencies = [
 
 [[package]]
 name = "indenter"
-version = "0.3.3"
+version = "0.3.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ce23b50ad8242c51a442f3ff322d56b02f08852c77e4c0b4d3fd684abc89c683"
+checksum = "964de6e86d545b246d84badc0fef527924ace5134f30641c203ef52ba83f58d5"
 
 [[package]]
 name = "indexmap"
-version = "2.7.1"
+version = "2.11.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8c9c992b02b5b4c94ea26e32fe5bccb7aa7d9f390ab5c1221ff895bc7ea8b652"
+checksum = "4b0f83760fb341a774ed326568e19f5a863af4a952def8c39f9ab92fd95b88e5"
 dependencies = [
  "equivalent",
- "hashbrown",
+ "hashbrown 0.16.0",
 ]
 
 [[package]]
 name = "indicatif"
-version = "0.17.11"
+version = "0.18.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "183b3088984b400f4cfac3620d5e076c84da5364016b4f49473de574b2586235"
+checksum = "70a646d946d06bedbbc4cac4c218acf4bbf2d87757a784857025f4d447e4e1cd"
 dependencies = [
  "console",
- "number_prefix",
  "portable-atomic",
  "unicode-width",
+ "unit-prefix",
  "web-time",
 ]
 
@@ -1033,34 +1058,24 @@ dependencies = [
 
 [[package]]
 name = "indoc"
-version = "2.0.5"
+version = "2.0.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b248f5224d1d606005e02c97f5aa4e88eeb230488bcc03bc9ca4d7991399f2b5"
+checksum = "f4c7245a08504955605670dbf141fceab975f15ca21570696aebe9d2e71576bd"
 
 [[package]]
 name = "intervallum"
-version = "1.4.1"
+version = "1.4.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "18bfda24d3930aa647f90044d5ef87d0c8120f13b86b2d60e8aade66e656e659"
+checksum = "412d970960179c81fd2ae4be0459dee697fb7d01bdcb343ec18199ae2aa7e481"
 dependencies = [
- "bit-set 0.5.3",
+ "bit-set 0.8.0",
  "gcollections",
  "num-integer",
  "num-traits",
+ "serde",
  "trilean",
 ]
 
-[[package]]
-name = "is-terminal"
-version = "0.4.15"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e19b23d53f35ce9f56aebc7d1bb4e6ac1e9c0db7ac85c8d1760c04379edced37"
-dependencies = [
- "hermit-abi 0.4.0",
- "libc",
- "windows-sys",
-]
-
 [[package]]
 name = "is_terminal_polyfill"
 version = "1.70.1"
@@ -1096,24 +1111,49 @@ dependencies = [
 
 [[package]]
 name = "itoa"
-version = "1.0.14"
+version = "1.0.15"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d75a2a4b1b190afb6f5425f10f6a8f959d2ea0b9c2b1d79553551850539e4674"
+checksum = "4a5f13b858c8d314ee3e8f639011f7ccefe71f97f96e50151fb991f267928e2c"
+
+[[package]]
+name = "jiff"
+version = "0.2.15"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "be1f93b8b1eb69c77f24bbb0afdf66f54b632ee39af40ca21c4365a1d7347e49"
+dependencies = [
+ "jiff-static",
+ "log",
+ "portable-atomic",
+ "portable-atomic-util",
+ "serde",
+]
+
+[[package]]
+name = "jiff-static"
+version = "0.2.15"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "03343451ff899767262ec32146f6d559dd759fdadf42ff0e227c7c48f72594b4"
+dependencies = [
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
+]
 
 [[package]]
 name = "jobserver"
-version = "0.1.32"
+version = "0.1.34"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "48d1dbcbbeb6a7fec7e059840aa538bd62aaccf972c7346c4d9d2059312853d0"
+checksum = "9afb3de4395d6b3e67a780b6de64b51c978ecf11cb9a462c66be7d4ca9039d33"
 dependencies = [
+ "getrandom 0.3.3",
  "libc",
 ]
 
 [[package]]
 name = "js-sys"
-version = "0.3.77"
+version = "0.3.80"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1cfaf33c695fc6e08064efbc1f72ec937429614f25eef83af942d0e227c3a28f"
+checksum = "852f13bec5eba4ba9afbeb93fd7c13fe56147f055939ae21c43a29a0ecb2702e"
 dependencies = [
  "once_cell",
  "wasm-bindgen",
@@ -1189,33 +1229,39 @@ dependencies = [
  "static_assertions",
 ]
 
+[[package]]
+name = "libbz2-rs-sys"
+version = "0.2.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "2c4a545a15244c7d945065b5d392b2d2d7f21526fba56ce51467b06ed445e8f7"
+
 [[package]]
 name = "libc"
-version = "0.2.169"
+version = "0.2.175"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b5aba8db14291edd000dfcc4d620c7ebfb122c613afb886ca8803fa4e128a20a"
+checksum = "6a82ae493e598baaea5209805c49bbf2ea7de956d50d7da0da1164f9c6d28543"
 
 [[package]]
 name = "libloading"
-version = "0.8.6"
+version = "0.8.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fc2f4eb4bc735547cfed7c0a4922cbd04a4655978c09b54f1f7b228750664c34"
+checksum = "07033963ba89ebaf1584d767badaa2e8fcec21aedea6b8c0346d487d49c28667"
 dependencies = [
  "cfg-if",
- "windows-targets",
+ "windows-targets 0.53.3",
 ]
 
 [[package]]
 name = "libm"
-version = "0.2.11"
+version = "0.2.15"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8355be11b20d696c8f18f6cc018c4e372165b1fa8126cef092399c9951984ffa"
+checksum = "f9fbbcab51052fe104eb5e5d351cf728d30a5be1fe14d9be8a3b097481fb97de"
 
 [[package]]
 name = "libz-sys"
-version = "1.1.21"
+version = "1.1.22"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "df9b68e50e6e0b26f672573834882eb57759f6db9b3be2ea3c35c91188bb4eaa"
+checksum = "8b70e7a7df205e92a1a4cd9aaae7898dac0aa555503cc0a649494d0d60e7651d"
 dependencies = [
  "cc",
  "cmake",
@@ -1226,15 +1272,15 @@ dependencies = [
 
 [[package]]
 name = "linux-raw-sys"
-version = "0.4.15"
+version = "0.11.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d26c52dbd32dccf2d10cac7725f8eae5296885fb5703b261f7d0a0739ec807ab"
+checksum = "df1d3c3b53da64cf5760482273a98e575c651a67eec7f77df96b5b642de8f039"
 
 [[package]]
 name = "lock_api"
-version = "0.4.12"
+version = "0.4.13"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "07af8b9cdd281b7915f413fa73f29ebd5d55d0d3f0155584dade1ff18cea1b17"
+checksum = "96936507f153605bddfcda068dd804796c84324ed2510809e5b2a624c81da765"
 dependencies = [
  "autocfg",
  "scopeguard",
@@ -1243,9 +1289,9 @@ dependencies = [
 
 [[package]]
 name = "log"
-version = "0.4.26"
+version = "0.4.28"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "30bde2b3dc3671ae49d8e2e9f044c7c005836e7a023ee57cffa25ab82764bb9e"
+checksum = "34080505efa8e45a4b816c349525ebe327ceaa8559756f0356cba97ef3bf7432"
 
 [[package]]
 name = "lzma-sys"
@@ -1266,9 +1312,9 @@ checksum = "3e2e65a1a2e43cfcb47a895c4c8b10d1f4a61097f9f254f183aee60cad9c651d"
 
 [[package]]
 name = "matrixmultiply"
-version = "0.3.9"
+version = "0.3.10"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9380b911e3e96d10c1f415da0876389aaf1b56759054eeb0de7df940c456ba1a"
+checksum = "a06de3016e9fae57a36fd14dba131fccf49f74b40b7fbdb472f96e361ec71a08"
 dependencies = [
  "autocfg",
  "rawpointer",
@@ -1276,9 +1322,9 @@ dependencies = [
 
 [[package]]
 name = "memchr"
-version = "2.7.4"
+version = "2.7.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "78ca9ab1a0babb1e7d5695e3530886289c18cf2f87ec19a575a0abdce112e3a3"
+checksum = "32a282da65faaf38286cf3be983213fcf1d2e2a58700e808f83f4ea9a4804bc0"
 
 [[package]]
 name = "minimal-lexical"
@@ -1308,40 +1354,30 @@ dependencies = [
 
 [[package]]
 name = "miniz_oxide"
-version = "0.7.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b8a240ddb74feaf34a79a7add65a741f3167852fba007066dcac1ca548d89c08"
-dependencies = [
- "adler",
-]
-
-[[package]]
-name = "miniz_oxide"
-version = "0.8.4"
+version = "0.8.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b3b1c9bd4fe1f0f8b387f6eb9eb3b4a1aa26185e5750efb9140301703f62cd1b"
+checksum = "1fa76a2c86f704bdb222d66965fb3d63269ce38518b83cb0575fca855ebb6316"
 dependencies = [
  "adler2",
 ]
 
 [[package]]
 name = "multimap"
-version = "0.10.0"
+version = "0.10.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "defc4c55412d89136f966bbb339008b474350e5e6e78d2714439c386b3137a03"
+checksum = "1d87ecb2933e8aeadb3e3a02b828fed80a7528047e68b4f424523a0981a3a084"
 dependencies = [
  "serde",
 ]
 
 [[package]]
 name = "nalgebra"
-version = "0.32.6"
+version = "0.33.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7b5c17de023a86f59ed79891b2e5d5a94c705dbe904a5b5c9c952ea6221b03e4"
+checksum = "26aecdf64b707efd1310e3544d709c5c0ac61c13756046aaaba41be5c4f66a3b"
 dependencies = [
  "approx",
  "matrixmultiply",
- "nalgebra-macros",
  "num-complex",
  "num-rational",
  "num-traits",
@@ -1351,17 +1387,6 @@ dependencies = [
  "typenum",
 ]
 
-[[package]]
-name = "nalgebra-macros"
-version = "0.2.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "254a5372af8fc138e36684761d3c0cdb758a4410e938babcff1c860ce14ddbfc"
-dependencies = [
- "proc-macro2",
- "quote",
- "syn",
-]
-
 [[package]]
 name = "ndarray"
 version = "0.16.1"
@@ -1472,7 +1497,7 @@ version = "0.49.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "2b94966806ac7aec118d41eea7080bfbd0e8b843ba64f46522c57f0f55cfb1f0"
 dependencies = [
- "bitflags 2.8.0",
+ "bitflags 2.9.4",
  "indexmap",
  "lexical-core",
  "memchr",
@@ -1557,49 +1582,40 @@ dependencies = [
 
 [[package]]
 name = "num_cpus"
-version = "1.16.0"
+version = "1.17.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4161fcb6d602d4d2081af7c3a45852d875a03dd337a6bfdd6e06407b61342a43"
+checksum = "91df4bbde75afed763b708b7eee1e8e7651e02d97f6d5dd763e89367e957b23b"
 dependencies = [
- "hermit-abi 0.3.9",
+ "hermit-abi 0.5.2",
  "libc",
 ]
 
-[[package]]
-name = "number_prefix"
-version = "0.4.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "830b246a0e5f20af87141b25c173cd1b609bd7779a4617d6ec582abaf90870f3"
-
 [[package]]
 name = "object"
-version = "0.32.2"
+version = "0.36.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a6a622008b6e321afc04970976f62ee297fdbaa6f95318ca343e3eebb9648441"
+checksum = "62948e14d923ea95ea2c7c86c71013138b66525b86bdc08d2dcc262bdb497b87"
 dependencies = [
  "memchr",
 ]
 
 [[package]]
 name = "once_cell"
-version = "1.20.3"
+version = "1.21.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "945462a4b81e43c4e3ba96bd7b49d834c6f61198356aa858733bc4acf3cbe62e"
+checksum = "42f5e15c9953c5e4ccceeb2e7382a716482c34515315f7b03532b8b4e8393d2d"
 
 [[package]]
-name = "ordered-float"
-version = "2.10.1"
+name = "once_cell_polyfill"
+version = "1.70.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "68f19d67e5a2795c94e73e0bb1cc1a7edeb2e28efd39e2e1c9b7a40c1108b11c"
-dependencies = [
- "num-traits",
-]
+checksum = "a4895175b425cb1f87721b59f0f286c2092bd4af812243672510e1ac53e2e0ad"
 
 [[package]]
 name = "ordered-float"
-version = "4.6.0"
+version = "2.10.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7bb71e1b3fa6ca1c61f383464aaf2bb0e2f8e772a1f01d486832464de363b951"
+checksum = "68f19d67e5a2795c94e73e0bb1cc1a7edeb2e28efd39e2e1c9b7a40c1108b11c"
 dependencies = [
  "num-traits",
 ]
@@ -1617,19 +1633,19 @@ dependencies = [
 
 [[package]]
 name = "os_pipe"
-version = "1.2.1"
+version = "1.2.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5ffd2b0a5634335b135d5728d84c5e0fd726954b87111f7506a61c502280d982"
+checksum = "db335f4760b14ead6290116f2427bf33a14d4f0617d49f78a246de10c1831224"
 dependencies = [
  "libc",
- "windows-sys",
+ "windows-sys 0.59.0",
 ]
 
 [[package]]
 name = "owo-colors"
-version = "3.5.0"
+version = "4.2.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c1b04fb49957986fdce4d6ee7a65027d55d4b6d2265e5848bbb507b58ccfdb6f"
+checksum = "48dd4f4a2c8405440fd0462561f0e5806bd0f77e86f51c761481bdd4018b545e"
 
 [[package]]
 name = "pangraph"
@@ -1650,7 +1666,7 @@ dependencies = [
  "csv",
  "ctor",
  "derive_more",
- "env_logger 0.11.6",
+ "env_logger",
  "eyre",
  "flate2",
  "gcollections",
@@ -1673,7 +1689,7 @@ dependencies = [
  "parking_lot",
  "pretty_assertions",
  "pretty_dtoa",
- "rand 0.9.0",
+ "rand 0.9.2",
  "rand_isaac",
  "rayon",
  "regex",
@@ -1685,8 +1701,8 @@ dependencies = [
  "serde_stacker",
  "serde_yaml",
  "smart-default",
- "strum 0.27.1",
- "strum_macros 0.27.1",
+ "strum 0.27.2",
+ "strum_macros 0.27.2",
  "tempfile",
  "twox-hash",
  "xz2",
@@ -1704,9 +1720,9 @@ dependencies = [
 
 [[package]]
 name = "parking_lot"
-version = "0.12.3"
+version = "0.12.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f1bf18183cf54e8d6059647fc3063646a1801cf30896933ec2311622cc4b9a27"
+checksum = "70d58bf43669b5795d1576d0641cfb6fbb2057bf629506267a92807158584a13"
 dependencies = [
  "lock_api",
  "parking_lot_core",
@@ -1714,18 +1730,18 @@ dependencies = [
 
 [[package]]
 name = "parking_lot_core"
-version = "0.9.10"
+version = "0.9.11"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1e401f977ab385c9e4e3ab30627d6f26d00e2c73eef317493c4ec6d468726cf8"
+checksum = "bc838d2a56b5b1a6c25f55575dfc605fabb63bb2365f6c2353ef9159aa69e4a5"
 dependencies = [
  "backtrace",
  "cfg-if",
  "libc",
- "petgraph",
+ "petgraph 0.6.5",
  "redox_syscall",
  "smallvec",
  "thread-id",
- "windows-targets",
+ "windows-targets 0.52.6",
 ]
 
 [[package]]
@@ -1740,8 +1756,20 @@ version = "0.6.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "b4c5cc86750666a3ed20bdaf5ca2a0344f9c67674cae0515bec2da16fbaa47db"
 dependencies = [
- "fixedbitset",
+ "fixedbitset 0.4.2",
+ "indexmap",
+]
+
+[[package]]
+name = "petgraph"
+version = "0.8.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "54acf3a685220b533e437e264e4d932cfbdc4cc7ec0cd232ed73c08d03b8a7ca"
+dependencies = [
+ "fixedbitset 0.5.7",
+ "hashbrown 0.15.5",
  "indexmap",
+ "serde",
 ]
 
 [[package]]
@@ -1758,15 +1786,15 @@ checksum = "8b870d8c151b6f2fb93e84a13146138f05d02ed11c7e7c54f8826aaaf7c9f184"
 
 [[package]]
 name = "pkg-config"
-version = "0.3.31"
+version = "0.3.32"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "953ec861398dccce10c670dfeaf3ec4911ca479e9c02154b3a215178c5f566f2"
+checksum = "7edddbd0b52d732b21ad9a5fab5c704c14cd949e5e9a1ec5929a24fded1b904c"
 
 [[package]]
 name = "portable-atomic"
-version = "1.10.0"
+version = "1.11.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "280dc24453071f1b63954171985a0b0d30058d287960968b9b2aca264c8d4ee6"
+checksum = "f84267b20a16ea918e43c6a88433c2d54fa145c92a811b5b047ccbe153674483"
 
 [[package]]
 name = "portable-atomic-util"
@@ -1779,11 +1807,11 @@ dependencies = [
 
 [[package]]
 name = "ppv-lite86"
-version = "0.2.20"
+version = "0.2.21"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "77957b295656769bb8ad2b6a6b09d897d94f05c41b069aede1fcdaa675eaea04"
+checksum = "85eae3c4ed2f50dcfe72643da4befc30deadb458a9b590d720cde2f2b1e97da9"
 dependencies = [
- "zerocopy 0.7.35",
+ "zerocopy",
 ]
 
 [[package]]
@@ -1807,19 +1835,19 @@ dependencies = [
 
 [[package]]
 name = "prettyplease"
-version = "0.2.29"
+version = "0.2.37"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6924ced06e1f7dfe3fa48d57b9f74f55d8915f5036121bef647ef4b204895fac"
+checksum = "479ca8adacdd7ce8f1fb39ce9ecccbfe93a3f1344b3d0d97f20bc0196208f62b"
 dependencies = [
- "proc-macro2",
- "syn",
+ "proc-macro2 1.0.101",
+ "syn 2.0.106",
 ]
 
 [[package]]
 name = "proc-macro-crate"
-version = "3.2.0"
+version = "3.4.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8ecf48c7ca261d60b74ab1a7b20da18bede46776b2e55535cb958eb595c5fa7b"
+checksum = "219cb19e96be00ab2e37d6e299658a0cfa83e52429179969b0f0121b4ac46983"
 dependencies = [
  "toml_edit",
 ]
@@ -1830,8 +1858,8 @@ version = "2.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "96de42df36bb9bba5542fe9f1a054b8cc87e172759a1868aa05c1f3acc89dfc5"
 dependencies = [
- "proc-macro2",
- "quote",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
 ]
 
 [[package]]
@@ -1841,38 +1869,62 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "11ec05c52be0a07b08061f7dd003e7d7092e0472bc731b4af7bb1ef876109802"
 dependencies = [
  "proc-macro-error-attr2",
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
+]
+
+[[package]]
+name = "proc-macro2"
+version = "0.4.30"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "cf3d2011ab5c909338f7887f4fc896d35932e29146c12c8d01da6b22a80ba759"
+dependencies = [
+ "unicode-xid 0.1.0",
 ]
 
 [[package]]
 name = "proc-macro2"
-version = "1.0.93"
+version = "1.0.101"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "60946a68e5f9d28b0dc1c21bb8a97ee7d018a8b322fa57838ba31cc878e22d99"
+checksum = "89ae43fd86e4158d6db51ad8e2b80f313af9cc74f5c0e03ccb87de09998732de"
 dependencies = [
  "unicode-ident",
 ]
 
 [[package]]
 name = "psm"
-version = "0.1.25"
+version = "0.1.26"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f58e5423e24c18cc840e1c98370b3993c6649cd1678b4d24318bcf0a083cbe88"
+checksum = "6e944464ec8536cd1beb0bbfd96987eb5e3b72f2ecdafdc5c769a37f1fa2ae1f"
 dependencies = [
  "cc",
 ]
 
 [[package]]
 name = "quote"
-version = "1.0.38"
+version = "0.6.13"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "6ce23b6b870e8f94f81fb0a363d65d86675884b34a09043c81e5562f11c1f8e1"
+dependencies = [
+ "proc-macro2 0.4.30",
+]
+
+[[package]]
+name = "quote"
+version = "1.0.40"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0e4dccaaaf89514f546c693ddc140f729f958c247918a13380cccc6078391acc"
+checksum = "1885c039570dc00dcb4ff087a89e185fd56bae234ddc7f056a945bf36467248d"
 dependencies = [
- "proc-macro2",
+ "proc-macro2 1.0.101",
 ]
 
+[[package]]
+name = "r-efi"
+version = "5.3.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "69cdb34c158ceb288df11e18b4bd39de994f6657d83847bdffdbd7f346754b0f"
+
 [[package]]
 name = "rand"
 version = "0.8.5"
@@ -1887,15 +1939,14 @@ dependencies = [
 
 [[package]]
 name = "rand"
-version = "0.9.0"
+version = "0.9.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3779b94aeb87e8bd4e834cee3650289ee9e0d5677f976ecdb6d219e5f4f6cd94"
+checksum = "6db2770f06117d490610c7488547d543617b21bfa07796d7a12f6f1bd53850d1"
 dependencies = [
  "log",
  "rand_chacha 0.9.0",
- "rand_core 0.9.1",
+ "rand_core 0.9.3",
  "serde",
- "zerocopy 0.8.20",
 ]
 
 [[package]]
@@ -1915,7 +1966,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "d3022b5f1df60f26e1ffddd6c66e8aa15de382ae63b3a0c1bfc0e4d3e3f325cb"
 dependencies = [
  "ppv-lite86",
- "rand_core 0.9.1",
+ "rand_core 0.9.3",
 ]
 
 [[package]]
@@ -1924,19 +1975,18 @@ version = "0.6.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "ec0be4795e2f6a28069bec0b5ff3e2ac9bafc99e6a9a7dc3547996c5c816922c"
 dependencies = [
- "getrandom 0.2.15",
+ "getrandom 0.2.16",
  "serde",
 ]
 
 [[package]]
 name = "rand_core"
-version = "0.9.1"
+version = "0.9.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a88e0da7a2c97baa202165137c158d0a2e824ac465d13d81046727b34cb247d3"
+checksum = "99d9a13982dcf210057a8a78572b2217b667c3beacbf3a0d8b454f6f82837d38"
 dependencies = [
- "getrandom 0.3.1",
+ "getrandom 0.3.3",
  "serde",
- "zerocopy 0.8.20",
 ]
 
 [[package]]
@@ -1955,7 +2005,7 @@ version = "0.4.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "3382fc9f0aad4f2e2a56b53d9133c8c810b4dbf21e7e370e24346161a5b2c7bd"
 dependencies = [
- "rand_core 0.9.1",
+ "rand_core 0.9.3",
  "serde",
 ]
 
@@ -1967,9 +2017,9 @@ checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3"
 
 [[package]]
 name = "rayon"
-version = "1.10.0"
+version = "1.11.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b418a60154510ca1a002a752ca9714984e21e4241e804d32555251faf8b78ffa"
+checksum = "368f01d005bf8fd9b1206fb6fa653e6c4a81ceb1466406b81792d87c5677a58f"
 dependencies = [
  "either",
  "rayon-core",
@@ -1977,9 +2027,9 @@ dependencies = [
 
 [[package]]
 name = "rayon-core"
-version = "1.12.1"
+version = "1.13.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1465873a3dfdaa8ae7cb14b4383657caab0b3e8a0aa9ae8e04b044854c8dfce2"
+checksum = "22e18b0f0062d30d4230b2e85ff77fdfe4326feb054b9783a3460d8435c8ab91"
 dependencies = [
  "crossbeam-deque",
  "crossbeam-utils",
@@ -1987,38 +2037,38 @@ dependencies = [
 
 [[package]]
 name = "redox_syscall"
-version = "0.5.8"
+version = "0.5.17"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "03a862b389f93e68874fbf580b9de08dd02facb9a788ebadaf4a3fd33cf58834"
+checksum = "5407465600fb0548f1442edf71dd20683c6ed326200ace4b1ef0763521bb3b77"
 dependencies = [
- "bitflags 2.8.0",
+ "bitflags 2.9.4",
 ]
 
 [[package]]
 name = "ref-cast"
-version = "1.0.23"
+version = "1.0.24"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ccf0a6f84d5f1d581da8b41b47ec8600871962f2a528115b542b362d4b744931"
+checksum = "4a0ae411dbe946a674d89546582cea4ba2bb8defac896622d6496f14c23ba5cf"
 dependencies = [
  "ref-cast-impl",
 ]
 
 [[package]]
 name = "ref-cast-impl"
-version = "1.0.23"
+version = "1.0.24"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bcc303e793d3734489387d205e9b186fac9c6cfacedd98cbb2e8a5943595f3e6"
+checksum = "1165225c21bff1f3bbce98f5a1f889949bc902d3575308cc7b0de30b4f6d27c7"
 dependencies = [
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
 name = "regex"
-version = "1.11.1"
+version = "1.11.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b544ef1b4eac5dc2db33ea63606ae9ffcfac26c1416a2806ae0bf5f56b201191"
+checksum = "23d7fd106d8c02486a8d64e778353d1cffe08ce79ac2e82f540c86d0facf6912"
 dependencies = [
  "aho-corasick",
  "memchr",
@@ -2028,9 +2078,9 @@ dependencies = [
 
 [[package]]
 name = "regex-automata"
-version = "0.4.9"
+version = "0.4.10"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "809e8dc61f6de73b46c85f4c96486310fe304c434cfa43669d7b40f711150908"
+checksum = "6b9458fa0bfeeac22b5ca447c63aaf45f28439a709ccd244698632f9aa6394d6"
 dependencies = [
  "aho-corasick",
  "memchr",
@@ -2039,9 +2089,9 @@ dependencies = [
 
 [[package]]
 name = "regex-syntax"
-version = "0.8.5"
+version = "0.8.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2b15c43186be67a4fd63bee50d0303afffcef381492ebe2c5d87f324e1b8815c"
+checksum = "caf4aa5b0f434c91fe5c7f1ecb6a5ece2130b02ad2a590589dda5146df959001"
 
 [[package]]
 name = "relative-path"
@@ -2051,39 +2101,38 @@ checksum = "ba39f3699c378cd8970968dcbff9c43159ea4cfbd88d43c00b22f2ef10a435d2"
 
 [[package]]
 name = "rstest"
-version = "0.24.0"
+version = "0.26.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "03e905296805ab93e13c1ec3a03f4b6c4f35e9498a3d5fa96dc626d22c03cd89"
+checksum = "f5a3193c063baaa2a95a33f03035c8a72b83d97a54916055ba22d35ed3839d49"
 dependencies = [
  "futures-timer",
  "futures-util",
  "rstest_macros",
- "rustc_version 0.4.1",
 ]
 
 [[package]]
 name = "rstest_macros"
-version = "0.24.0"
+version = "0.26.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ef0053bbffce09062bee4bcc499b0fbe7a57b879f1efe088d6d8d4c7adcdef9b"
+checksum = "9c845311f0ff7951c5506121a9ad75aec44d083c31583b2ea5a30bcb0b0abba0"
 dependencies = [
  "cfg-if",
  "glob",
  "proc-macro-crate",
- "proc-macro2",
- "quote",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
  "regex",
  "relative-path",
  "rustc_version 0.4.1",
- "syn",
+ "syn 2.0.106",
  "unicode-ident",
 ]
 
 [[package]]
 name = "rustc-demangle"
-version = "0.1.24"
+version = "0.1.26"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "719b953e2095829ee67db738b3bfa9fa368c94900df327b3f07fe6e794d2fe1f"
+checksum = "56f7d92ca342cea22a06f2121d944b4fd82af56988c270852495420f961d4ace"
 
 [[package]]
 name = "rustc-hash"
@@ -2106,33 +2155,33 @@ version = "0.4.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "cfcb3a22ef46e85b45de6ee7e79d063319ebb6594faafcf1c225ea92ab6e9b92"
 dependencies = [
- "semver 1.0.25",
+ "semver 1.0.27",
 ]
 
 [[package]]
 name = "rustix"
-version = "0.38.44"
+version = "1.1.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fdb5bc1ae2baa591800df16c9ca78619bf65c0488b41b96ccec5d11220d8c154"
+checksum = "cd15f8a2c5551a84d56efdc1cd049089e409ac19a3072d5037a17fd70719ff3e"
 dependencies = [
- "bitflags 2.8.0",
+ "bitflags 2.9.4",
  "errno",
  "libc",
  "linux-raw-sys",
- "windows-sys",
+ "windows-sys 0.61.0",
 ]
 
 [[package]]
 name = "rustversion"
-version = "1.0.19"
+version = "1.0.22"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f7c45b9784283f1b2e7fb61b42047c2fd678ef0960d4f6f1eba131594cc369d4"
+checksum = "b39cdef0fa800fc44525c84ccb54a029961a8215f9619753635a9c0d2538d46d"
 
 [[package]]
 name = "ryu"
-version = "1.0.19"
+version = "1.0.20"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6ea1a2d0a644769cc99faa24c3ad26b379b786fe7c36fd3c546254801650e6dd"
+checksum = "28d3b2b1366ec20994f1fd18c3c594f05c5dd4bc44d8bb0c1c632c8d6829481f"
 
 [[package]]
 name = "ryu_floating_decimal"
@@ -2151,9 +2200,9 @@ dependencies = [
 
 [[package]]
 name = "schemars"
-version = "1.0.0-alpha.17"
+version = "1.0.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "88ef2a6523400a2228db974a8ddc9e1d3deaa04f51bddd7832ef8d7e531bafcc"
+checksum = "82d20c4491bc164fa2f6c5d44565947a52ad80b9505d8e36f8d54c27c739fcd0"
 dependencies = [
  "chrono",
  "dyn-clone",
@@ -2167,14 +2216,14 @@ dependencies = [
 
 [[package]]
 name = "schemars_derive"
-version = "1.0.0-alpha.17"
+version = "1.0.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c6d4e1945a3c9e58edaa708449b026519f7f4197185e1b5dbc689615c1ad724d"
+checksum = "33d020396d1d138dc19f1165df7545479dcd58d93810dc5d646a16e55abefa80"
 dependencies = [
- "proc-macro2",
- "quote",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
  "serde_derive_internals",
- "syn",
+ "syn 2.0.106",
 ]
 
 [[package]]
@@ -2191,24 +2240,25 @@ checksum = "d4f410fedcf71af0345d7607d246e7ad15faaadd49d240ee3b24e5dc21a820ac"
 
 [[package]]
 name = "semver"
-version = "1.0.25"
+version = "1.0.27"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f79dfe2d285b0488816f30e700a7438c5a73d816b5b7d3ac72fbc48b0d185e03"
+checksum = "d767eb0aabc880b29956c35734170f26ed551a859dbd361d140cdbeca61ab1e2"
 
 [[package]]
 name = "serde"
-version = "1.0.218"
+version = "1.0.225"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e8dfc9d19bdbf6d17e22319da49161d5d0108e4188e8b680aef6299eed22df60"
+checksum = "fd6c24dee235d0da097043389623fb913daddf92c76e9f5a1db88607a0bcbd1d"
 dependencies = [
+ "serde_core",
  "serde_derive",
 ]
 
 [[package]]
 name = "serde-aux"
-version = "4.6.0"
+version = "4.7.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5290c39c5f6992b9dddbda28541d965dba46468294e6018a408fa297e6c602de"
+checksum = "207f67b28fe90fb596503a9bf0bf1ea5e831e21307658e177c5dfcdfc3ab8a0a"
 dependencies = [
  "chrono",
  "serde",
@@ -2226,15 +2276,24 @@ dependencies = [
  "serde",
 ]
 
+[[package]]
+name = "serde_core"
+version = "1.0.225"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "659356f9a0cb1e529b24c01e43ad2bdf520ec4ceaf83047b83ddcc2251f96383"
+dependencies = [
+ "serde_derive",
+]
+
 [[package]]
 name = "serde_derive"
-version = "1.0.218"
+version = "1.0.225"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f09503e191f4e797cb8aac08e9a4a4695c5edf6a2e70e376d961ddd5c969f82b"
+checksum = "0ea936adf78b1f766949a4977b91d2f5595825bd6ec079aa9543ad2685fc4516"
 dependencies = [
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
@@ -2243,31 +2302,33 @@ version = "0.29.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "18d26a20a969b9e3fdf2fc2d9f21eda6c40e2de84c9408bb5d3b05d499aae711"
 dependencies = [
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
 name = "serde_json"
-version = "1.0.139"
+version = "1.0.145"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "44f86c3acccc9c65b153fe1b85a3be07fe5515274ec9f0653b4a0875731c72a6"
+checksum = "402a6f66d8c709116cf22f558eab210f5a50187f702eb4d7e5ef38d9a7f1c79c"
 dependencies = [
  "indexmap",
  "itoa",
  "memchr",
  "ryu",
  "serde",
+ "serde_core",
 ]
 
 [[package]]
 name = "serde_stacker"
-version = "0.1.11"
+version = "0.1.14"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "babfccff5773ff80657f0ecf553c7c516bdc2eb16389c0918b36b73e7015276e"
+checksum = "d4936375d50c4be7eff22293a9344f8e46f323ed2b3c243e52f89138d9bb0f4a"
 dependencies = [
  "serde",
+ "serde_core",
  "stacker",
 ]
 
@@ -2301,9 +2362,9 @@ checksum = "0fda2ff0d084019ba4d7c6f371c95d8fd75ce3524c3cb8fb653a3023f6323e64"
 
 [[package]]
 name = "simba"
-version = "0.8.1"
+version = "0.9.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "061507c94fc6ab4ba1c9a0305018408e312e17c041eb63bef8aa726fa33aceae"
+checksum = "c99284beb21666094ba2b75bbceda012e610f5479dfcc2d6e2426f53197ffd95"
 dependencies = [
  "approx",
  "num-complex",
@@ -2314,18 +2375,15 @@ dependencies = [
 
 [[package]]
 name = "slab"
-version = "0.4.9"
+version = "0.4.11"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8f92a496fb766b417c996b9c5e57daf2f7ad3b0bebe1ccfca4856390e3d3bb67"
-dependencies = [
- "autocfg",
-]
+checksum = "7a2ae44ef20feb57a68b23d846850f861394c2e02dc425a50098ae8c90267589"
 
 [[package]]
 name = "smallvec"
-version = "1.14.0"
+version = "1.15.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7fcf8323ef1faaee30a44a340193b1ac6814fd9b7b4e88e9d4519a3e4abe1cfd"
+checksum = "67b1b7a3b5fe4f1376887184045fcf45c69e92af734b7aaddc05fb777b6fbd03"
 
 [[package]]
 name = "smart-default"
@@ -2333,22 +2391,22 @@ version = "0.7.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "0eb01866308440fc64d6c44d9e86c5cc17adfe33c4d6eed55da9145044d0ffc1"
 dependencies = [
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
 name = "stacker"
-version = "0.1.18"
+version = "0.1.21"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1d08feb8f695b465baed819b03c128dc23f57a694510ab1f06c77f763975685e"
+checksum = "cddb07e32ddb770749da91081d8d0ac3a16f1a569a18b20348cd371f5dead06b"
 dependencies = [
  "cc",
  "cfg-if",
  "libc",
  "psm",
- "windows-sys",
+ "windows-sys 0.59.0",
 ]
 
 [[package]]
@@ -2359,9 +2417,9 @@ checksum = "a2eb9349b6444b326872e140eb1cf5e7c522154d69e7a0ffb0fb81c06b37543f"
 
 [[package]]
 name = "statrs"
-version = "0.17.1"
+version = "0.18.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f697a07e4606a0a25c044de247e583a330dbb1731d11bc7350b81f48ad567255"
+checksum = "2a3fe7c28c6512e766b0874335db33c94ad7b8f9054228ae1c2abd47ce7d335e"
 dependencies = [
  "approx",
  "nalgebra",
@@ -2383,9 +2441,9 @@ checksum = "8fec0f0aef304996cf250b31b5a10dee7980c85da9d759361292b8bca5a18f06"
 
 [[package]]
 name = "strum"
-version = "0.27.1"
+version = "0.27.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f64def088c51c9510a8579e3c5d67c65349dcf755e5479ad3d010aa6454e2c32"
+checksum = "af23d6f6c1a224baef9d3f61e287d2761385a5b88fdab4eb4c6f11aeb54c4bcf"
 
 [[package]]
 name = "strum_macros"
@@ -2394,66 +2452,75 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "4c6bee85a5a24955dc440386795aa378cd9cf82acd5f764469152d2270e581be"
 dependencies = [
  "heck",
- "proc-macro2",
- "quote",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
  "rustversion",
- "syn",
+ "syn 2.0.106",
 ]
 
 [[package]]
 name = "strum_macros"
-version = "0.27.1"
+version = "0.27.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c77a8c5abcaf0f9ce05d62342b7d298c346515365c36b673df4ebe3ced01fde8"
+checksum = "7695ce3845ea4b33927c055a39dc438a45b059f7c1b3d91d38d10355fb8cbca7"
 dependencies = [
  "heck",
- "proc-macro2",
- "quote",
- "rustversion",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
 name = "syn"
-version = "2.0.98"
+version = "0.15.44"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "36147f1a48ae0ec2b5b3bc5b537d267457555a10dc06f3dbc8cb11ba3006d3b1"
+checksum = "9ca4b3b69a77cbe1ffc9e198781b7acb0c7365a883670e8f1c1bc66fba79a5c5"
 dependencies = [
- "proc-macro2",
- "quote",
+ "proc-macro2 0.4.30",
+ "quote 0.6.13",
+ "unicode-xid 0.1.0",
+]
+
+[[package]]
+name = "syn"
+version = "2.0.106"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "ede7c438028d4436d71104916910f5bb611972c5cfd7f89b8300a8186e6fada6"
+dependencies = [
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
  "unicode-ident",
 ]
 
 [[package]]
 name = "tempfile"
-version = "3.17.1"
+version = "3.22.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "22e5a0acb1f3f55f65cc4a866c361b2fb2a0ff6366785ae6fbb5f85df07ba230"
+checksum = "84fa4d11fadde498443cca10fd3ac23c951f0dc59e080e9f4b93d4df4e4eea53"
 dependencies = [
- "cfg-if",
  "fastrand",
- "getrandom 0.3.1",
+ "getrandom 0.3.3",
  "once_cell",
  "rustix",
- "windows-sys",
+ "windows-sys 0.61.0",
 ]
 
 [[package]]
-name = "termcolor"
-version = "1.4.1"
+name = "thiserror"
+version = "1.0.69"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "06794f8f6c5c898b3275aebefa6b8a1cb24cd2c6c79397ab15774837a0bc5755"
+checksum = "b6aaf5339b578ea85b50e080feb250a3e8ae8cfcdff9a461c9ec2904bc923f52"
 dependencies = [
- "winapi-util",
+ "thiserror-impl 1.0.69",
 ]
 
 [[package]]
 name = "thiserror"
-version = "1.0.69"
+version = "2.0.16"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b6aaf5339b578ea85b50e080feb250a3e8ae8cfcdff9a461c9ec2904bc923f52"
+checksum = "3467d614147380f2e4e374161426ff399c91084acd2363eaf549172b3d5e60c0"
 dependencies = [
- "thiserror-impl",
+ "thiserror-impl 2.0.16",
 ]
 
 [[package]]
@@ -2462,9 +2529,20 @@ version = "1.0.69"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "4fee6c4efc90059e10f81e6d42c60a18f76588c3d74cb83a0b242a2b6c7504c1"
 dependencies = [
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
+]
+
+[[package]]
+name = "thiserror-impl"
+version = "2.0.16"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "6c5e1be1c48b9172ee610da68fd9cd2770e7a4056cb3fc98710ee6906f0c7960"
+dependencies = [
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
@@ -2479,28 +2557,40 @@ dependencies = [
 
 [[package]]
 name = "thread_local"
-version = "1.1.8"
+version = "1.1.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8b9ef9bad013ada3808854ceac7b46812a6465ba368859a37e2100283d2d719c"
+checksum = "f60246a4944f24f6e018aa17cdeffb7818b76356965d03b07d6a9886e8962185"
 dependencies = [
  "cfg-if",
- "once_cell",
 ]
 
 [[package]]
 name = "toml_datetime"
-version = "0.6.8"
+version = "0.7.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0dd7358ecb8fc2f8d014bf86f6f638ce72ba252a2c3a2572f2a795f1d23efb41"
+checksum = "32f1085dec27c2b6632b04c80b3bb1b4300d6495d1e129693bdda7d91e72eec1"
+dependencies = [
+ "serde_core",
+]
 
 [[package]]
 name = "toml_edit"
-version = "0.22.24"
+version = "0.23.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "17b4795ff5edd201c7cd6dca065ae59972ce77d1b80fa0a84d94950ece7d1474"
+checksum = "f3effe7c0e86fdff4f69cdd2ccc1b96f933e24811c5441d44904e8683e27184b"
 dependencies = [
  "indexmap",
  "toml_datetime",
+ "toml_parser",
+ "winnow",
+]
+
+[[package]]
+name = "toml_parser"
+version = "1.0.3"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "4cf893c33be71572e0e9aa6dd15e6677937abd686b066eac3f8cd3531688a627"
+dependencies = [
  "winnow",
 ]
 
@@ -2516,9 +2606,9 @@ dependencies = [
 
 [[package]]
 name = "tracing-core"
-version = "0.1.33"
+version = "0.1.34"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e672c95779cf947c5311f83787af4fa8fffd12fb27e4993211a84bdfd9610f9c"
+checksum = "b9d12581f227e93f094d3af2ae690a574abb8a2b9b7a96e7cfe9647b2b617678"
 dependencies = [
  "once_cell",
  "valuable",
@@ -2536,9 +2626,9 @@ dependencies = [
 
 [[package]]
 name = "tracing-subscriber"
-version = "0.3.19"
+version = "0.3.20"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e8189decb5ac0fa7bc8b96b7cb9b2701d60d48805aca84a238004d665fcc4008"
+checksum = "2054a14f5307d601f88daf0553e1cbf472acc4f2c51afab632431cdcd72124d5"
 dependencies = [
  "sharded-slab",
  "thread_local",
@@ -2559,11 +2649,11 @@ checksum = "22048bc95dfb2ffd05b1ff9a756290a009224b60b2f0e7525faeee7603851e63"
 
 [[package]]
 name = "twox-hash"
-version = "2.1.0"
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-checksum = "e7b17f197b3050ba473acf9181f7b1d3b66d1cf7356c6cc57886662276e65908"
+checksum = "9ea3136b675547379c4bd395ca6b938e5ad3c3d20fad76e7fe85f9e0d011419c"
 dependencies = [
- "rand 0.8.5",
+ "rand 0.9.2",
  "serde",
 ]
 
@@ -2581,9 +2671,9 @@ checksum = "75b844d17643ee918803943289730bec8aac480150456169e647ed0b576ba539"
 
 [[package]]
 name = "unicode-ident"
-version = "1.0.17"
+version = "1.0.19"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "00e2473a93778eb0bad35909dff6a10d28e63f792f16ed15e404fca9d5eeedbe"
+checksum = "f63a545481291138910575129486daeaf8ac54aee4387fe7906919f7830c7d9d"
 
 [[package]]
 name = "unicode-segmentation"
@@ -2593,9 +2683,15 @@ checksum = "f6ccf251212114b54433ec949fd6a7841275f9ada20dddd2f29e9ceea4501493"
 
 [[package]]
 name = "unicode-width"
-version = "0.2.0"
+version = "0.2.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1fc81956842c57dac11422a97c3b8195a1ff727f06e85c84ed2e8aa277c9a0fd"
+checksum = "4a1a07cc7db3810833284e8d372ccdc6da29741639ecc70c9ec107df0fa6154c"
+
+[[package]]
+name = "unicode-xid"
+version = "0.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "fc72304796d0818e357ead4e000d19c9c174ab23dc11093ac919054d20a6a7fc"
 
 [[package]]
 name = "unicode-xid"
@@ -2603,6 +2699,12 @@ version = "0.2.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "ebc1c04c71510c7f702b52b7c350734c9ff1295c464a03335b00bb84fc54f853"
 
+[[package]]
+name = "unit-prefix"
+version = "0.5.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "323402cff2dd658f39ca17c789b502021b3f18707c91cdf22e3838e1b4023817"
+
 [[package]]
 name = "unsafe-libyaml"
 version = "0.2.11"
@@ -2638,73 +2740,83 @@ dependencies = [
 
 [[package]]
 name = "wasi"
-version = "0.11.0+wasi-snapshot-preview1"
+version = "0.11.1+wasi-snapshot-preview1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423"
+checksum = "ccf3ec651a847eb01de73ccad15eb7d99f80485de043efb2f370cd654f4ea44b"
 
 [[package]]
 name = "wasi"
-version = "0.13.3+wasi-0.2.2"
+version = "0.14.7+wasi-0.2.4"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "883478de20367e224c0090af9cf5f9fa85bed63a95c1abf3afc5c083ebc06e8c"
+dependencies = [
+ "wasip2",
+]
+
+[[package]]
+name = "wasip2"
+version = "1.0.1+wasi-0.2.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "26816d2e1a4a36a2940b96c5296ce403917633dff8f3440e9b236ed6f6bacad2"
+checksum = "0562428422c63773dad2c345a1882263bbf4d65cf3f42e90921f787ef5ad58e7"
 dependencies = [
- "wit-bindgen-rt",
+ "wit-bindgen",
 ]
 
 [[package]]
 name = "wasm-bindgen"
-version = "0.2.100"
+version = "0.2.103"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1edc8929d7499fc4e8f0be2262a241556cfc54a0bea223790e71446f2aab1ef5"
+checksum = "ab10a69fbd0a177f5f649ad4d8d3305499c42bab9aef2f7ff592d0ec8f833819"
 dependencies = [
  "cfg-if",
  "once_cell",
  "rustversion",
  "wasm-bindgen-macro",
+ "wasm-bindgen-shared",
 ]
 
 [[package]]
 name = "wasm-bindgen-backend"
-version = "0.2.100"
+version = "0.2.103"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2f0a0651a5c2bc21487bde11ee802ccaf4c51935d0d3d42a6101f98161700bc6"
+checksum = "0bb702423545a6007bbc368fde243ba47ca275e549c8a28617f56f6ba53b1d1c"
 dependencies = [
  "bumpalo",
  "log",
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
  "wasm-bindgen-shared",
 ]
 
 [[package]]
 name = "wasm-bindgen-macro"
-version = "0.2.100"
+version = "0.2.103"
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-checksum = "7fe63fc6d09ed3792bd0897b314f53de8e16568c2b3f7982f468c0bf9bd0b407"
+checksum = "fc65f4f411d91494355917b605e1480033152658d71f722a90647f56a70c88a0"
 dependencies = [
- "quote",
+ "quote 1.0.40",
  "wasm-bindgen-macro-support",
 ]
 
 [[package]]
 name = "wasm-bindgen-macro-support"
-version = "0.2.100"
+version = "0.2.103"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8ae87ea40c9f689fc23f209965b6fb8a99ad69aeeb0231408be24920604395de"
+checksum = "ffc003a991398a8ee604a401e194b6b3a39677b3173d6e74495eb51b82e99a32"
 dependencies = [
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
  "wasm-bindgen-backend",
  "wasm-bindgen-shared",
 ]
 
 [[package]]
 name = "wasm-bindgen-shared"
-version = "0.2.100"
+version = "0.2.103"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1a05d73b933a847d6cccdda8f838a22ff101ad9bf93e33684f39c1f5f0eece3d"
+checksum = "293c37f4efa430ca14db3721dfbe48d8c33308096bd44d80ebaa775ab71ba1cf"
 dependencies = [
  "unicode-ident",
 ]
@@ -2721,9 +2833,9 @@ dependencies = [
 
 [[package]]
 name = "wide"
-version = "0.7.32"
+version = "0.7.33"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "41b5576b9a81633f3e8df296ce0063042a73507636cbe956c61133dd7034ab22"
+checksum = "0ce5da8ecb62bcd8ec8b7ea19f69a51275e91299be594ea5cc6ef7819e16cd03"
 dependencies = [
  "bytemuck",
  "safe_arch",
@@ -2746,27 +2858,74 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6"
 
 [[package]]
-name = "winapi-util"
-version = "0.1.9"
+name = "winapi-x86_64-pc-windows-gnu"
+version = "0.4.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f"
+
+[[package]]
+name = "windows-core"
+version = "0.62.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "57fe7168f7de578d2d8a05b07fd61870d2e73b4020e9f49aa00da8471723497c"
+dependencies = [
+ "windows-implement",
+ "windows-interface",
+ "windows-link 0.2.0",
+ "windows-result",
+ "windows-strings",
+]
+
+[[package]]
+name = "windows-implement"
+version = "0.60.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a47fddd13af08290e67f4acabf4b459f647552718f683a7b415d290ac744a836"
+dependencies = [
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
+]
+
+[[package]]
+name = "windows-interface"
+version = "0.59.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cf221c93e13a30d793f7645a0e7762c55d169dbb0a49671918a2319d289b10bb"
+checksum = "bd9211b69f8dcdfa817bfd14bf1c97c9188afa36f4750130fcdf3f400eca9fa8"
 dependencies = [
- "windows-sys",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
-name = "winapi-x86_64-pc-windows-gnu"
+name = "windows-link"
+version = "0.1.3"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "5e6ad25900d524eaabdbbb96d20b4311e1e7ae1699af4fb28c17ae66c80d798a"
+
+[[package]]
+name = "windows-link"
+version = "0.2.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "45e46c0661abb7180e7b9c281db115305d49ca1709ab8242adf09666d2173c65"
+
+[[package]]
+name = "windows-result"
 version = "0.4.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f"
+checksum = "7084dcc306f89883455a206237404d3eaf961e5bd7e0f312f7c91f57eb44167f"
+dependencies = [
+ "windows-link 0.2.0",
+]
 
 [[package]]
-name = "windows-core"
-version = "0.52.0"
+name = "windows-strings"
+version = "0.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "33ab640c8d7e35bf8ba19b884ba838ceb4fba93a4e8c65a9059d08afcfc683d9"
+checksum = "7218c655a553b0bed4426cf54b20d7ba363ef543b52d515b3e48d7fd55318dda"
 dependencies = [
- "windows-targets",
+ "windows-link 0.2.0",
 ]
 
 [[package]]
@@ -2775,7 +2934,25 @@ version = "0.59.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "1e38bc4d79ed67fd075bcc251a1c39b32a1776bbe92e5bef1f0bf1f8c531853b"
 dependencies = [
- "windows-targets",
+ "windows-targets 0.52.6",
+]
+
+[[package]]
+name = "windows-sys"
+version = "0.60.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "f2f500e4d28234f72040990ec9d39e3a6b950f9f22d3dba18416c35882612bcb"
+dependencies = [
+ "windows-targets 0.53.3",
+]
+
+[[package]]
+name = "windows-sys"
+version = "0.61.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "e201184e40b2ede64bc2ea34968b28e33622acdbbf37104f0e4a33f7abe657aa"
+dependencies = [
+ "windows-link 0.2.0",
 ]
 
 [[package]]
@@ -2784,14 +2961,31 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "9b724f72796e036ab90c1021d4780d4d3d648aca59e491e6b98e725b84e99973"
 dependencies = [
- "windows_aarch64_gnullvm",
- "windows_aarch64_msvc",
- "windows_i686_gnu",
- "windows_i686_gnullvm",
- "windows_i686_msvc",
- "windows_x86_64_gnu",
- "windows_x86_64_gnullvm",
- "windows_x86_64_msvc",
+ "windows_aarch64_gnullvm 0.52.6",
+ "windows_aarch64_msvc 0.52.6",
+ "windows_i686_gnu 0.52.6",
+ "windows_i686_gnullvm 0.52.6",
+ "windows_i686_msvc 0.52.6",
+ "windows_x86_64_gnu 0.52.6",
+ "windows_x86_64_gnullvm 0.52.6",
+ "windows_x86_64_msvc 0.52.6",
+]
+
+[[package]]
+name = "windows-targets"
+version = "0.53.3"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d5fe6031c4041849d7c496a8ded650796e7b6ecc19df1a431c1a363342e5dc91"
+dependencies = [
+ "windows-link 0.1.3",
+ "windows_aarch64_gnullvm 0.53.0",
+ "windows_aarch64_msvc 0.53.0",
+ "windows_i686_gnu 0.53.0",
+ "windows_i686_gnullvm 0.53.0",
+ "windows_i686_msvc 0.53.0",
+ "windows_x86_64_gnu 0.53.0",
+ "windows_x86_64_gnullvm 0.53.0",
+ "windows_x86_64_msvc 0.53.0",
 ]
 
 [[package]]
@@ -2800,65 +2994,110 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "32a4622180e7a0ec044bb555404c800bc9fd9ec262ec147edd5989ccd0c02cd3"
 
+[[package]]
+name = "windows_aarch64_gnullvm"
+version = "0.53.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "86b8d5f90ddd19cb4a147a5fa63ca848db3df085e25fee3cc10b39b6eebae764"
+
 [[package]]
 name = "windows_aarch64_msvc"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "09ec2a7bb152e2252b53fa7803150007879548bc709c039df7627cabbd05d469"
 
+[[package]]
+name = "windows_aarch64_msvc"
+version = "0.53.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "c7651a1f62a11b8cbd5e0d42526e55f2c99886c77e007179efff86c2b137e66c"
+
 [[package]]
 name = "windows_i686_gnu"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "8e9b5ad5ab802e97eb8e295ac6720e509ee4c243f69d781394014ebfe8bbfa0b"
 
+[[package]]
+name = "windows_i686_gnu"
+version = "0.53.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "c1dc67659d35f387f5f6c479dc4e28f1d4bb90ddd1a5d3da2e5d97b42d6272c3"
+
 [[package]]
 name = "windows_i686_gnullvm"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "0eee52d38c090b3caa76c563b86c3a4bd71ef1a819287c19d586d7334ae8ed66"
 
+[[package]]
+name = "windows_i686_gnullvm"
+version = "0.53.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "9ce6ccbdedbf6d6354471319e781c0dfef054c81fbc7cf83f338a4296c0cae11"
+
 [[package]]
 name = "windows_i686_msvc"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "240948bc05c5e7c6dabba28bf89d89ffce3e303022809e73deaefe4f6ec56c66"
 
+[[package]]
+name = "windows_i686_msvc"
+version = "0.53.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "581fee95406bb13382d2f65cd4a908ca7b1e4c2f1917f143ba16efe98a589b5d"
+
 [[package]]
 name = "windows_x86_64_gnu"
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 checksum = "147a5c80aabfbf0c7d901cb5895d1de30ef2907eb21fbbab29ca94c5b08b1a78"
 
+[[package]]
+name = "windows_x86_64_gnu"
+version = "0.53.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "2e55b5ac9ea33f2fc1716d1742db15574fd6fc8dadc51caab1c16a3d3b4190ba"
+
 [[package]]
 name = "windows_x86_64_gnullvm"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d"
 
+[[package]]
+name = "windows_x86_64_gnullvm"
+version = "0.53.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0a6e035dd0599267ce1ee132e51c27dd29437f63325753051e71dd9e42406c57"
+
 [[package]]
 name = "windows_x86_64_msvc"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec"
 
+[[package]]
+name = "windows_x86_64_msvc"
+version = "0.53.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "271414315aff87387382ec3d271b52d7ae78726f5d44ac98b4f4030c91880486"
+
 [[package]]
 name = "winnow"
-version = "0.7.3"
+version = "0.7.13"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0e7f4ea97f6f78012141bcdb6a216b2609f0979ada50b20ca5b52dde2eac2bb1"
+checksum = "21a0236b59786fed61e2a80582dd500fe61f18b5dca67a4a067d0bc9039339cf"
 dependencies = [
  "memchr",
 ]
 
 [[package]]
-name = "wit-bindgen-rt"
-version = "0.33.0"
+name = "wit-bindgen"
+version = "0.46.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3268f3d866458b787f390cf61f4bbb563b922d091359f9608842999eaee3943c"
-dependencies = [
- "bitflags 2.8.0",
-]
+checksum = "f17a85883d4e6d00e8a97c586de764dabcc06133f7f1d55dce5cdc070ad7fe59"
 
 [[package]]
 name = "xz2"
@@ -2877,43 +3116,22 @@ checksum = "cfe53a6657fd280eaa890a3bc59152892ffa3e30101319d168b781ed6529b049"
 
 [[package]]
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-version = "0.7.35"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1b9b4fd18abc82b8136838da5d50bae7bdea537c574d8dc1a34ed098d6c166f0"
-dependencies = [
- "byteorder",
- "zerocopy-derive 0.7.35",
-]
-
-[[package]]
-name = "zerocopy"
-version = "0.8.20"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dde3bb8c68a8f3f1ed4ac9221aad6b10cece3e60a8e2ea54a6a2dec806d0084c"
-dependencies = [
- "zerocopy-derive 0.8.20",
-]
-
-[[package]]
-name = "zerocopy-derive"
-version = "0.7.35"
+version = "0.8.27"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fa4f8080344d4671fb4e831a13ad1e68092748387dfc4f55e356242fae12ce3e"
+checksum = "0894878a5fa3edfd6da3f88c4805f4c8558e2b996227a3d864f47fe11e38282c"
 dependencies = [
- "proc-macro2",
- "quote",
- "syn",
+ "zerocopy-derive",
 ]
 
 [[package]]
 name = "zerocopy-derive"
-version = "0.8.20"
+version = "0.8.27"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "eea57037071898bf96a6da35fd626f4f27e9cee3ead2a6c703cf09d472b2e700"
+checksum = "88d2b8d9c68ad2b9e4340d7832716a4d21a22a1154777ad56ea55c51a9cf3831"
 dependencies = [
- "proc-macro2",
- "quote",
- "syn",
+ "proc-macro2 1.0.101",
+ "quote 1.0.40",
+ "syn 2.0.106",
 ]
 
 [[package]]
@@ -2927,18 +3145,18 @@ dependencies = [
 
 [[package]]
 name = "zstd-safe"
-version = "7.2.1"
+version = "7.2.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "54a3ab4db68cea366acc5c897c7b4d4d1b8994a9cd6e6f841f8964566a419059"
+checksum = "8f49c4d5f0abb602a93fb8736af2a4f4dd9512e36f7f570d66e65ff867ed3b9d"
 dependencies = [
  "zstd-sys",
 ]
 
 [[package]]
 name = "zstd-sys"
-version = "2.0.13+zstd.1.5.6"
+version = "2.0.16+zstd.1.5.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "38ff0f21cfee8f97d94cef41359e0c89aa6113028ab0291aa8ca0038995a95aa"
+checksum = "91e19ebc2adc8f83e43039e79776e3fda8ca919132d68a1fed6a5faca2683748"
 dependencies = [
  "cc",
  "pkg-config",
diff --git a/Cargo.toml b/Cargo.toml
index 000751f5..8b73a0fa 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -27,9 +27,9 @@ keywords = [
 authors = ["NeherLab team"]
 
 [workspace.dependencies]
-bzip2 = { version = "=0.5.1", features = ["static"] }
-flate2 = "=1.1.0"
-libz-sys = { version = "=1.1.21", features = ["static", "stock-zlib", "cmake"] }
+bzip2 = { version = "=0.6.0", features = ["static"] }
+flate2 = "=1.1.2"
+libz-sys = { version = "=1.1.22", features = ["static", "stock-zlib", "cmake"] }
 xz2 = { version = "=0.1.7", features = ["static"] }
 zstd = { version = "=0.13.3", features = ["zstdmt"] }
 
@@ -41,54 +41,54 @@ minimap2-sys = { path = "packages/minimap2-sys", features = ["simde", "static",
 approx = "=0.5.1"
 atty = "=0.2.14"
 auto_ops = "=0.3.0"
-bio = "=2.0.3"
-chrono = { version = "=0.4.39", default-features = false, features = ["clock", "std", "wasmbind"] }
-clap = { version = "=4.5.30", features = ["derive", "color", "unicode", "unstable-styles"] }
-clap-markdown = "=0.1.4"
-clap_complete = "=4.5.45"
+bio = "=3.0.0"
+chrono = { version = "=0.4.42", default-features = false, features = ["clock", "std", "wasmbind"] }
+clap = { version = "=4.5.48", features = ["derive", "color", "unicode", "unstable-styles"] }
+clap-markdown = "=0.1.5"
+clap_complete = "=4.5.58"
 clap_complete_fig = "=4.5.2"
-cmd_lib = "=1.9.5"
-color-eyre = "=0.6.3"
+cmd_lib = "=2.0.0"
+color-eyre = "=0.6.5"
 csv = "=1.3.1"
-ctor = "=0.3.6"
+ctor = "=0.5.0"
 derive_more = { version = "=2.0.1", features = ["full"] }
-env_logger = "=0.11.6"
+env_logger = "=0.11.8"
 eyre = "=0.6.12"
 gcollections = "=1.5.0"
-getset = "=0.1.4"
-indicatif = "0.17.11"
+getset = "=0.1.6"
+indicatif = "0.18.0"
 indicatif-log-bridge = "0.2.3"
-indoc = "=2.0.5"
-intervallum = "=1.4.1"
+indoc = "=2.0.6"
+intervallum = "=1.4.4"
 itertools = "=0.14.0"
-log = "=0.4.26"
+log = "=0.4.28"
 maplit = "=1.0.2"
 ndarray = { version = "=0.16.1", features = ["rayon", "serde", "blas", "approx"] }
 ndarray-stats = "=0.6.0"
 noodles = { version = "=0.60.0", features = ["core", "sam"] }
 num = "=0.4.3"
 num-traits = "=0.2.19"
-num_cpus = "=1.16.0"
+num_cpus = "=1.17.0"
 ordered-float = { version = "=5.0.0", features = ["serde"] }
-parking_lot = { version = "=0.12.3", features = ["deadlock_detection", "hardware-lock-elision", "serde", "arc_lock"] }
+parking_lot = { version = "=0.12.4", features = ["deadlock_detection", "hardware-lock-elision", "serde", "arc_lock"] }
 pretty_assertions = "=1.4.1"
 pretty_dtoa = "=0.3.0"
-rand = { version = "=0.9.0", features = ["serde", "log"] }
+rand = { version = "=0.9.2", features = ["serde", "log"] }
 rand_isaac = { version = "=0.4.0", features = ["serde"] }
-rayon = "=1.10.0"
-regex = "=1.11.1"
-rstest = "=0.24.0"
-schemars = { version = "=1.0.0-alpha.17", features = ["chrono04", "either1", "indexmap2", "raw_value", "schemars_derive", "preserve_order"] }
-serde = { version = "=1.0.218", features = ["derive"] }
-serde-aux = "=4.6.0"
-serde_json = { version = "=1.0.139", features = ["preserve_order", "unbounded_depth"] }
-serde_stacker = { version = "=0.1.11" }
+rayon = "=1.11.0"
+regex = "=1.11.2"
+rstest = "=0.26.1"
+schemars = { version = "=1.0.4", features = ["chrono04", "either1", "indexmap2", "raw_value", "schemars_derive", "preserve_order"] }
+serde = { version = "=1.0.225", features = ["derive"] }
+serde-aux = "=4.7.0"
+serde_json = { version = "=1.0.145", features = ["preserve_order", "unbounded_depth"] }
+serde_stacker = { version = "=0.1.14" }
 serde_yaml = "=0.9.34"
 smart-default = "=0.7.1"
-strum = "=0.27.1"
-strum_macros = "=0.27.1"
-tempfile = "=3.17.1"
-twox-hash = { version = "=2.1.0", features = ["serialize"] }
+strum = "=0.27.2"
+strum_macros = "=0.27.2"
+tempfile = "=3.22.0"
+twox-hash = { version = "=2.1.2", features = ["serialize"] }
 
 
 [workspace.lints.rust]
diff --git a/packages/minimap2-sys/Cargo.toml b/packages/minimap2-sys/Cargo.toml
index 5d6f6878..29fb7cf2 100644
--- a/packages/minimap2-sys/Cargo.toml
+++ b/packages/minimap2-sys/Cargo.toml
@@ -30,11 +30,11 @@ exclude = [
 ]
 
 [dependencies]
-libz-sys = { version = "1.1.21", default-features = false }
+libz-sys = { version = "1.1.22", default-features = false }
 
 [build-dependencies]
-bindgen = { version = "0.71.1", features = ["which-rustfmt", "runtime"] }
-cc = { version = "1.2.15" }
+bindgen = { version = "0.72.1", features = ["runtime"] }
+cc = { version = "1.2.38" }
 
 [features]
 default = ["libz-sys/libc"]
@@ -44,4 +44,3 @@ noopt = []
 zlib-ng = ["libz-sys/zlib-ng"]
 static = ["libz-sys/static"]
 stock-zlib = ["libz-sys/stock-zlib"]
-

From 87753a78a73571146fb8d23ceeb1a3d5154c8a44 Mon Sep 17 00:00:00 2001
From: ivan-aksamentov <ivan.aksamentov@gmail.com>
Date: Sat, 20 Sep 2025 02:46:53 +0200
Subject: [PATCH 2/6] fix: api changes in schemars

---
 packages/pangraph/src/representation/seq.rs      | 2 +-
 packages/pangraph/src/representation/seq_char.rs | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/pangraph/src/representation/seq.rs b/packages/pangraph/src/representation/seq.rs
index 30c40b21..38690822 100644
--- a/packages/pangraph/src/representation/seq.rs
+++ b/packages/pangraph/src/representation/seq.rs
@@ -550,7 +550,7 @@ impl<'de> serde::Deserialize<'de> for Seq {
 }
 
 impl JsonSchema for Seq {
-  fn always_inline_schema() -> bool {
+  fn inline_schema() -> bool {
     true
   }
 
diff --git a/packages/pangraph/src/representation/seq_char.rs b/packages/pangraph/src/representation/seq_char.rs
index e43be676..4f12a987 100644
--- a/packages/pangraph/src/representation/seq_char.rs
+++ b/packages/pangraph/src/representation/seq_char.rs
@@ -127,7 +127,7 @@ impl<'de> serde::Deserialize<'de> for AsciiChar {
 }
 
 impl JsonSchema for AsciiChar {
-  fn always_inline_schema() -> bool {
+  fn inline_schema() -> bool {
     true
   }
 

From cb599652f5f60cabc6184f620419becc998883b0 Mon Sep 17 00:00:00 2001
From: ivan-aksamentov <ivan.aksamentov@gmail.com>
Date: Sat, 20 Sep 2025 02:47:00 +0200
Subject: [PATCH 3/6] refactor: lint

---
 packages/pangraph/src/bin/merge_two_graphs.rs | 2 +-
 packages/pangraph/src/io/file.rs              | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/pangraph/src/bin/merge_two_graphs.rs b/packages/pangraph/src/bin/merge_two_graphs.rs
index cd0ea532..3684bec2 100644
--- a/packages/pangraph/src/bin/merge_two_graphs.rs
+++ b/packages/pangraph/src/bin/merge_two_graphs.rs
@@ -67,7 +67,7 @@ fn main() -> Result<(), Report> {
   #[cfg(debug_assertions)]
   merged.sanity_check()?;
 
-  info!("Writing merged graph to {:?}", args.build_args.output_json);
+  info!("Writing merged graph to {}", args.build_args.output_json.display());
 
   json_write_file(&args.build_args.output_json, &merged, JsonPretty(true))?;
 
diff --git a/packages/pangraph/src/io/file.rs b/packages/pangraph/src/io/file.rs
index da324b6e..49e54239 100644
--- a/packages/pangraph/src/io/file.rs
+++ b/packages/pangraph/src/io/file.rs
@@ -66,7 +66,7 @@ pub fn create_file_or_stdout(filepath: impl AsRef<Path>) -> Result<Box<dyn Write
   let filepath = filepath.as_ref();
 
   let file: Box<dyn Write + Sync + Send> = if is_path_stdout(filepath) {
-    info!("File path is {filepath:?}. Writing to standard output.");
+    info!("File path is {}. Writing to standard output.", filepath.display());
     Box::new(BufWriter::with_capacity(DEFAULT_FILE_BUF_SIZE, stdout()))
   } else {
     ensure_dir(filepath)?;

From fc264ab412e01d59d607b15106e95fa4a24257fd Mon Sep 17 00:00:00 2001
From: ivan-aksamentov <ivan.aksamentov@gmail.com>
Date: Sat, 20 Sep 2025 03:15:35 +0200
Subject: [PATCH 4/6] feat: update json schema

The schema definition json changed due to [changes in `schemars`](https://github.com/GREsau/schemars/pull/417)

The generated python code is unchanged due to this particular schema change, except `desc` property has been added, because it was forgotten on previous changes in pangraph.

I also fixed incorrect filename in the readme.
---
 .../pangraph-schemas/Pangraph.schema.json     | 38 ++++++++++++-------
 packages/pangraph-schemas/README.md           |  2 +-
 .../pangraph-schemas/python/Pangraph_model.py |  3 +-
 3 files changed, 28 insertions(+), 15 deletions(-)

diff --git a/packages/pangraph-schemas/Pangraph.schema.json b/packages/pangraph-schemas/Pangraph.schema.json
index 9772b61e..06b107b8 100644
--- a/packages/pangraph-schemas/Pangraph.schema.json
+++ b/packages/pangraph-schemas/Pangraph.schema.json
@@ -1,7 +1,7 @@
 {
   "$schema": "https://json-schema.org/draft/2020-12/schema",
   "title": "_PangraphSchemaRoot",
-  "description": "AUTOGENERATED! This JSON schema file is generated automatically from Rust types.\n The root object definition is a dummy container for the types being exposed. Disregard\n it. Instead, see the actual types in the `definitions` property of that container.",
+  "description": "AUTOGENERATED! This JSON schema file is generated automatically from Rust types.\nThe root object definition is a dummy container for the types being exposed. Disregard\nit. Instead, see the actual types in the `definitions` property of that container.",
   "type": "object",
   "properties": {
     "pangraph": {
@@ -17,21 +17,30 @@
       "properties": {
         "paths": {
           "type": "object",
-          "additionalProperties": {
-            "$ref": "#/$defs/PangraphPath"
-          }
+          "patternProperties": {
+            "^\\d+$": {
+              "$ref": "#/$defs/PangraphPath"
+            }
+          },
+          "additionalProperties": false
         },
         "blocks": {
           "type": "object",
-          "additionalProperties": {
-            "$ref": "#/$defs/PangraphBlock"
-          }
+          "patternProperties": {
+            "^\\d+$": {
+              "$ref": "#/$defs/PangraphBlock"
+            }
+          },
+          "additionalProperties": false
         },
         "nodes": {
           "type": "object",
-          "additionalProperties": {
-            "$ref": "#/$defs/PangraphNode"
-          }
+          "patternProperties": {
+            "^\\d+$": {
+              "$ref": "#/$defs/PangraphNode"
+            }
+          },
+          "additionalProperties": false
         }
       },
       "required": [
@@ -101,9 +110,12 @@
         },
         "alignments": {
           "type": "object",
-          "additionalProperties": {
-            "$ref": "#/$defs/Edit"
-          }
+          "patternProperties": {
+            "^\\d+$": {
+              "$ref": "#/$defs/Edit"
+            }
+          },
+          "additionalProperties": false
         }
       },
       "required": [
diff --git a/packages/pangraph-schemas/README.md b/packages/pangraph-schemas/README.md
index 49804bd2..b5e76f23 100644
--- a/packages/pangraph-schemas/README.md
+++ b/packages/pangraph-schemas/README.md
@@ -26,7 +26,7 @@ cd pangraph-schemas/
 pip3 install dacite datamodel-code-generator pydantic
 
 # Generate Python classes
-datamodel-codegen --input-file-type "jsonschema" --input "Pangraph.schema.json" --output-model-type "dataclasses.dataclass" --enum-field-as-literal=all --output "python/Pangraph.py"
+datamodel-codegen --input-file-type "jsonschema" --input "Pangraph.schema.json" --output-model-type "dataclasses.dataclass" --enum-field-as-literal=all --output "python/Pangraph_model.py"
 
 # Run the example using the generated Python classes
 python3 python/example.py path/to/your/pangraph/output.json
diff --git a/packages/pangraph-schemas/python/Pangraph_model.py b/packages/pangraph-schemas/python/Pangraph_model.py
index 2859f2a1..a28d39f3 100644
--- a/packages/pangraph-schemas/python/Pangraph_model.py
+++ b/packages/pangraph-schemas/python/Pangraph_model.py
@@ -1,6 +1,6 @@
 # generated by datamodel-codegen:
 #   filename:  Pangraph.schema.json
-#   timestamp: 2024-10-23T22:10:52+00:00
+#   timestamp: 2025-09-20T00:33:52+00:00
 
 from __future__ import annotations
 
@@ -44,6 +44,7 @@ class PangraphPath:
     tot_len: int
     circular: bool
     name: Optional[str] = None
+    desc: Optional[str] = None
 
 
 @dataclass

From 7a015b209f65fe55ac393ebed171a3574df677b1 Mon Sep 17 00:00:00 2001
From: ivan-aksamentov <ivan.aksamentov@gmail.com>
Date: Sat, 20 Sep 2025 17:45:36 +0200
Subject: [PATCH 5/6] chore: fix windows build

---
 dev/cross/build                   | 3 ++-
 dev/docker/cross-linux.dockerfile | 5 +++++
 2 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/dev/cross/build b/dev/cross/build
index 6e6577cb..650e4720 100755
--- a/dev/cross/build
+++ b/dev/cross/build
@@ -25,6 +25,7 @@ function build() {
 
   local c_arch="-march=native"
   local rust_arch="-C target-cpu=native"
+  local rust_dlltool="-C dlltool=${CROSS_DLLTOOL:-x86_64-w64-mingw32-dlltool}"
   case "${target}" in
   aarch64-apple* | aarch64-darwin*)
     c_arch="-mcpu=apple-m1"
@@ -46,7 +47,7 @@ function build() {
   declare -x CARGO_TARGET_X86_64_APPLE_DARWIN_RUSTFLAGS="${rust_arch} ${rust_crt_static} ${rust_apple}"
   declare -x CARGO_TARGET_AARCH64_UNKNOWN_LINUX_GNU_RUSTFLAGS="${rust_arch}"
   declare -x CARGO_TARGET_X86_64_UNKNOWN_LINUX_GNU_RUSTFLAGS="${rust_arch}"
-  declare -x CARGO_TARGET_X86_64_PC_WINDOWS_GNU_RUSTFLAGS="${rust_arch} ${rust_crt_static} ${rust_static} ${rust_self_contained}"
+  declare -x CARGO_TARGET_X86_64_PC_WINDOWS_GNU_RUSTFLAGS="${rust_arch} ${rust_crt_static} ${rust_static} ${rust_self_contained} ${rust_dlltool}"
   declare -x CARGO_TARGET_AARCH64_UNKNOWN_LINUX_MUSL_RUSTFLAGS="${rust_arch} ${rust_musl} ${rust_crt_static} ${rust_static} ${rust_self_contained}"
   declare -x CARGO_TARGET_X86_64_UNKNOWN_LINUX_MUSL_RUSTFLAGS="${rust_arch} ${rust_musl} ${rust_crt_static} ${rust_static} ${rust_self_contained}"
 
diff --git a/dev/docker/cross-linux.dockerfile b/dev/docker/cross-linux.dockerfile
index b7d76bfb..8f4180c5 100644
--- a/dev/docker/cross-linux.dockerfile
+++ b/dev/docker/cross-linux.dockerfile
@@ -124,6 +124,7 @@ ENV CROSS_ADDR2LINE="${CROSS_GCC_DIR}/bin/${CROSS_GCC_TRIPLET}-addr2line"
 ENV CROSS_AR="${CROSS_GCC_DIR}/bin/${CROSS_GCC_TRIPLET}-gcc-ar"
 ENV CROSS_AS="${CROSS_GCC_DIR}/bin/${CROSS_GCC_TRIPLET}-as"
 ENV CROSS_CPP="${CROSS_GCC_DIR}/bin/${CROSS_GCC_TRIPLET}-cpp"
+ENV CROSS_DLLTOOL="${CROSS_GCC_DIR}/bin/${CROSS_GCC_TRIPLET}-dlltool"
 ENV CROSS_ELFEDIT="${CROSS_GCC_DIR}/bin/${CROSS_GCC_TRIPLET}-elfedit"
 ENV CROSS_LD="${CROSS_GCC_DIR}/bin/${CROSS_GCC_TRIPLET}-ld"
 ENV CROSS_LDD="${CROSS_GCC_DIR}/bin/${CROSS_GCC_TRIPLET}-ldd"
@@ -144,6 +145,7 @@ ENV CROSSCC="${CROSS_CC}"
 ENV CROSSCXX="${CROSS_CXX}"
 ENV CROSSFC="${CROSS_FC}"
 ENV CROSSLD="${CROSS_LD}"
+ENV CROSSDLLTOOL="${CROSS_DLLTOOL}"
 
 ENV CC_${CROSS_COMPILE}="$CROSS_GCC"
 ENV CXX_${CROSS_COMPILE}="$CROSS_GXX"
@@ -156,6 +158,7 @@ ENV ADDR2LINE_${CROSS_COMPILE}="$CROSS_ADDR2LINE"
 ENV AR_${CROSS_COMPILE}="$CROSS_AR"
 ENV AS_${CROSS_COMPILE}="$CROSS_AS"
 ENV CPP_${CROSS_COMPILE}="$CROSS_CPP"
+ENV DLLTOOL_${CROSS_COMPILE}="$CROSS_DLLTOOL"
 ENV ELFEDIT_${CROSS_COMPILE}="$CROSS_ELFEDIT"
 ENV LD_${CROSS_COMPILE}="$CROSS_LD"
 ENV LDD_${CROSS_COMPILE}="$CROSS_LDD"
@@ -173,6 +176,8 @@ ENV BINDGEN_EXTRA_CLANG_ARGS_${CROSS_COMPILE}="--sysroot=${CROSS_SYSROOT}"
 ENV CARGO_TARGET_${CROSS_COMPILE_UPPER}_AR="${CROSS_AR}"
 ENV CARGO_TARGET_${CROSS_COMPILE_UPPER}_LINKER="${CROSS_CC}"
 ENV CARGO_TARGET_${CROSS_COMPILE_UPPER}_STRIP="${CROSS_STRIP}"
+ENV CARGO_TARGET_${CROSS_COMPILE_UPPER}_RANLIB="${CROSS_RANLIB}"
+ENV CARGO_TARGET_${CROSS_COMPILE_UPPER}_DLLTOOL="${CROSS_DLLTOOL}"
 ENV CARGO_TARGET_${CROSS_COMPILE_UPPER}_RUNNER="${CROSS_RUNNER}"
 
 

From 56396582f4824ccc0706ddf83254254fae4240f9 Mon Sep 17 00:00:00 2001
From: Marco Molari <mmolari91@gmail.com>
Date: Mon, 22 Sep 2025 13:25:22 +0200
Subject: [PATCH 6/6] docs: update changelog

---
 CHANGELOG.md | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 3b786316..84f7d430 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,3 +1,7 @@
+## Unreleased
+
+- updated Rust version to 1.90 (see #168) and dependencies (see #169)
+
 ## 1.2.1
 
 - Fix an edge-case bug: when updating the consensus of a block with a majority deletion, very rarely an unaligned node could be created. This is now fixed by extracting such nodes into a separate singleton block, see #158.