Merge branch 'main' of github.com:mpg-age-bioinformatics/software

Author: jorgeboucas

htslib/1.20/Dockerfile

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+FROM ubuntu:22.04
+
+LABEL maintainer="[email protected]"
+LABEL license="MPL-2.0"
+
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends \
+        wget \
+        build-essential \
+        zlib1g-dev \
+        libbz2-dev \
+        liblzma-dev \
+        ca-certificates && \
+    rm -rf /var/lib/apt/lists/*
+
+# Install htslib (includes tabix + bgzip)
+ENV HTSLIB_VERSION=1.20
+RUN wget https://github.com/samtools/htslib/releases/download/${HTSLIB_VERSION}/htslib-${HTSLIB_VERSION}.tar.bz2 && \
+    tar -xjf htslib-${HTSLIB_VERSION}.tar.bz2 && \
+    cd htslib-${HTSLIB_VERSION} && \
+    ./configure && make && make install && \
+    cd .. && rm -rf htslib-${HTSLIB_VERSION}*

modkit/0.5.0/Dockerfile

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+#as Modkit is rust-based
+FROM rust:1.70-slim AS builder
+
+WORKDIR /workspace
+
+RUN apt-get update && \
+    apt-get install -y --no-install-recommends git build-essential pkg-config libssl-dev && \
+    git clone --branch v0.5.0 https://github.com/nanoporetech/modkit.git . && \
+    cargo build --release
+
+# now smaller image in which we can run modkit
+FROM debian:bookworm-slim
+
+LABEL maintainer="[email protected]"
+LABEL license="MPL-2.0"
+
+COPY --from=builder /workspace/target/release/modkit /usr/local/bin/modkit
+