_config.yml

# Welcome to Jekyll!
#
# This config file is meant for settings that affect your whole blog, values
# which you are expected to set up once and rarely need to edit after that.
# For technical reasons, this file is *NOT* reloaded automatically when you use
# 'jekyll serve'. If you change this file, please restart the server process.

# Site settings
title: Roychoudhuri Lab - Immune regulation in inflammation and cancer
email: rr257@cam.ac.uk  
description: > # this means to ignore newlines until "baseurl:"
  Immune regulation in inflammation and cancer. We are located at the Department of Pathology at the University of Cambridge, Cambridge, UK. We study the immunoregulatory mechanisms that suppress immune activation under homeostasis and cancer immunosuppression. We are interested in the differentiation and function of CD4+ T cells, including Foxp3+ regulatory T cells, and CD8+ T cells with cytotoxic function. We are interested in the mechanisms that restrict T cell activation and CD8+ T cell memory in the context of adoptive immunotherapy and immune checkpoint blockade therapy. 
baseurl: ""
url: "http://roychoudhurilab.org"

include:
  - .htaccess
  - _pages

sass:
  sass_dir: _sass

# Conversion
markdown: kramdown
highlighter: rouge
lsi: false
excerpt_separator: "\n\n"
incremental: false

#Collections
collections:
  members:
    output: true
    permalink: member/:name
    sort_by: tier    
    
    
# Markdown Processing
kramdown:
  input: GFM
  hard_wrap: false
  auto_ids: true
  footnote_nr: 1
  entity_output: as_char
  toc_levels: 1..6
  smart_quotes: lsquo,rsquo,ldquo,rdquo
  enable_coderay: false
  parse_block_html: true # default for kramdown is false. This will enable using Markdown links


theme: jekyll-theme-slate