changed headers of vignette chunks

Author: mmedl94

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: lionfish
 Title: Interactive 'tourr's Using 'python'
-Version: 1.0.15
+Version: 1.0.16
 Authors@R: 
     person("Matthias", "Medl", , "matthias.medl@chello.at", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-3354-4579"))

vignettes/Bioprocess-Optimization.Rmd

@@ -134,9 +134,13 @@ set.seed(42)
 library(tourr)
 
 display_size <- 5 # Adjust to fit your display
+```
 
+```{r, eval=FALSE}
 init_env()
+```
 
+```{r, results="hide", message=FALSE}
 lda_tour_history_1d <- save_history(data_wo_y,
                                     tour_path = guided_tour(lda_pp(yield_values),d=1))
 
@@ -261,7 +265,7 @@ processes 09, 13, 17, 31, 32, and 36, and biological materials 03, 06,
 11 and 12. As a next step we reduce the dataset to only contain these
 variables and visualize the data in the same way we did earlier.
 
-```{r}
+```{r,results = 'hide', warning=FALSE, message=FALSE}
 data_rf_sel <- data[, ..top_10_features]
 
 grand_tour_history_1d <- save_history(data_rf_sel,
@@ -319,7 +323,7 @@ new_intervals <- seq(new_min_yield, new_max_yield, length.out = 4)
 new_yield_values <- findInterval(data$Yield, new_intervals, rightmost.closed = TRUE)
 ```
 
-```{r}
+```{r,results = 'hide', warning=FALSE, message=FALSE}
 grand_tour_history_1d <- save_history(data_rf_sel,
                                       tour_path = guided_tour(lda_pp(new_yield_values),d=1))
 

vignettes/Bioprocess-Optimization_files/header-attrs-2.28/header-attrs.js

@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});