@@ -62,7 +62,7 @@ fn attrs() {
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cmp_stdout ! ( & [ "." , "--to-txt" , "id,desc,seq" ] , fa, "seq;a=0\t b=3\t ATGC\n " ) ;
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cmp_stdout ! ( & [ "." , "-a" , "b={a:a}" , "--adelim" , ";" ] , fa, ">seq;a=0;b=0 b=3\n ATGC\n " ) ;
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cmp_stdout ! ( & [ "." , "-a" , "c={a:b}" ] , fa, ">seq;a=0 b=3 c=3\n ATGC\n " ) ;
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- // cmp_stdout!(&[".", "-a", "c={a:-b}"], fa, ">seq;a=0 c=3\nATGC\n");
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+ cmp_stdout ! ( & [ "." , "-a" , "c={a:-b}" ] , fa, ">seq;a=0 c=3\n ATGC\n " ) ;
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}
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#[ test]
@@ -213,7 +213,7 @@ fn set() {
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fn del ( ) {
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let fasta = ">seq;p=0 a=1 b=2\n ATGC\n " ;
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cmp_stdout ! ( & [ "del" , "-d" ] , fasta, ">seq;p=0\n ATGC\n " ) ;
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- // cmp_stdout!(&["del", "--attrs", "a,b"], fasta, ">seq;p=0\nATGC\n");
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+ cmp_stdout ! ( & [ "del" , "--attrs" , "a,b" ] , fasta, ">seq;p=0\n ATGC\n " ) ;
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cmp_stdout ! ( & [ "del" , "--adelim" , ";" , "--attrs" , "p" ] , fasta, ">seq a=1 b=2\n ATGC\n " ) ;
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}
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@@ -233,7 +233,7 @@ fn replace() {
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#[ test]
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fn split_n ( ) {
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for size in 1 ..5 {
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- let tmp_dir = :: std:: env:: temp_dir ( ) ; // tempdir::TempDir::new("split_test").expect("Could not create temporary directory");
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+ let tmp_dir = :: std:: env:: temp_dir ( ) ;
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let key = tmp_dir. join ( "f_{split:chunk}.{default_ext}" ) ;
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run ! ( & [ "split" , "-n" , & format!( "{}" , size) , "-pk" , & key. to_string_lossy( ) ] , FASTA )
@@ -322,5 +322,5 @@ fn filter() {
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let fa = ">id\n SEQ\n >id2 a=20\n SEQ\n >id3 a=\n SEQ" ;
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cmp_stdout_expr ! ( & [ "filter" , "def(a:a) and a:a >= 20" , "--to-txt" , "id" ] , fa, "id2\n " ) ;
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cmp_stdout_expr ! ( & [ "filter" , "a:a >= 20" , "--to-txt" , "id" ] , fa, "id2\n " ) ;
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- // cmp_stdout_expr!(&["filter", ".id like 'id*'", "--to-txt", "id"], fa, "id\nid2\nid3\n");
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+ cmp_stdout_expr ! ( & [ "filter" , ".id like 'id*'" , "--to-txt" , "id" ] , fa, "id\n id2\n id3\n " ) ;
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}
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