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leandroraduskyforce pushed to main • b6cd2a6…ac3366f • 
on Aug 21, 2023

partially complete work on model wrapper/runner

nthiadcreated model-wrapper • 8dbb1e2 • 
on Jun 28, 2023

note about virtual environment (#35)

Pull request merge
nthiadpushed 1 commit to main • 354a64e…b6cd2a6 • 
on Jun 2, 2023

ia() and get_parents() (#33)

Pull request merge
nthiadpushed 1 commit to main • 2db512e…354a64e • 
on Jun 1, 2023

note about virtual environment

nthiadpushed 1 commit to venv-note • 2db512e…285b728 • 
on Jun 1, 2023

refactor protein/structure (#30)

nthiadcreated venv-note • 2db512e • 
on Jun 1, 2023

ancestors_within_distance for max_distance param to get_parents()

nthiadpushed 1 commit to ia-term • 7bf599c…8bbff4e • 
on Jun 1, 2023

filtering to ensure children and parents are candidate terms, not act…

nthiadpushed 1 commit to ia-term • 94d09fa…7bf599c • 
on May 31, 2023

ia() and get_parents() for #28

nthiadcreated ia-term • 94d09fa • 
on May 30, 2023

refactor protein/structure (#30)

Pull request merge
nthiadpushed 1 commit to main • 5efc930…2db512e • 
on May 23, 2023

automatically load from uniprot with separate static methods for load…

nthiadpushed 1 commit to 1N • fc3d21a…deaf3a4 • 
on May 19, 2023

refactor protein/structure into 1:N relationship where protein method…

nthiadcreated 1N • fc3d21a • 
on May 17, 2023

add pre-baked alphafold url to structure

nthiadcreated alphafold • b5b6e85 • 
on May 12, 2023

adds go_terms_children() and build_graph() for prediction candidates (#…

Pull request merge
nthiadpushed 1 commit to main • 737eec4…5efc930 • 
on May 12, 2023

max_distance for go_terms_children and build_graph @staticmethod

nthiadpushed 1 commit to go-terms-children • dff6801…9057b0b • 
on May 11, 2023

adds go_terms_children() and build_graph() to collect candidate terms…

nthiadcreated go-terms-children • dff6801 • 
on May 10, 2023

support multiple xml entries for proteins

Force push
nthiadforce pushed to protein-multiple-entries • a572dfa…1f02cbe • 
on May 8, 2023

one hot sequence method for proteins

nthiadpushed 1 commit to main • 96dd983…737eec4 • 
on May 8, 2023

one hot sequence method for proteins

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nthiadforce pushed to one-hot-sequence • 03f1f8c…737eec4 • 
on May 8, 2023

adds contact_map() and get_chain_ids() to structure class

nthiadpushed 1 commit to main • ab1241d…96dd983 • 
on May 8, 2023

adds contact_map() and get_chain_ids() to structure class

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nthiadforce pushed to structure-contact-map • 136f2d0…96dd983 • 
on May 8, 2023

structure class with fetch_url factored out into a separate file

nthiadpushed 1 commit to main • cd6e860…ab1241d • 
on May 8, 2023

structure class with fetch_url factored out into a separate file

nthiadcreated structure-class • ab1241d • 
on May 8, 2023

Deleted branch

nthiaddeleted structure-class • 
on May 8, 2023

Initial commit

Force push
nthiadforce pushed to structure-class • 68a63ba…1353e78 • 
on May 8, 2023

structure class to load from ftp, http, or a file

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nthiadforce pushed to structure-class • 468299e…68a63ba • 
on May 8, 2023

factor out fetch_url into separate file and accept .pdb files the sam…

nthiadpushed 1 commit to structure-class • 68a63ba…468299e • 
on May 8, 2023

adds contact_map() and get_chain_ids() to structure class

Force push
nthiadforce pushed to structure-contact-map • ec959c9…136f2d0 • 
on May 5, 2023

adds contact_map() and get_chain_ids() to structure class

nthiadcreated structure-contact-map • ec959c9 • 
on May 5, 2023

support multiple xml entries for proteins

nthiadcreated protein-multiple-entries • a572dfa • 
on May 5, 2023