DESCRIPTION

Package: EasyMultiProfiler
Type: Package
Title: An Efficient and Convenient R package in Multi-omics Down-Stream Analysis and Visualization
Version: 0.2.7
Authors@R: c( person(given = "Bingdong", family = "liu",       email = "382983280@qq.com", role = c("aut", "cre")),
              person(given = "Erqiang",  family = "Hu",        email = "13766876214@163.com", role = c("aut", "ctb")))
Maintainer: Bingdong Liu <382983280@qq.com>
Description: The EasyMultiProfiler package aims to offer a user-friendly and efficient multi-omics data analysis tool on the R platform. It facilitates various essential tasks related to microbiome, genome, and metabolite downstream analysis, providing a seamless workflow from beginning to end.
License: Artistic-2.0
Encoding: UTF-8
Imports: 
    aplot,
    bigstatsr (>= 1.5.12),
    BiocManager (>= 1.30.22),    
    Boruta (>= 8.0.0),
    biomformat,
    bootnet,
    clusterProfiler (>= 4.10.0),
    data.table,
    DESeq2,
    DOSE,
    dplyr, 
    edgeR, 
    networkD3,
    dynamicTreeCut (>= 1.63.1),
    enrichplot (>= 1.22.0),
    fastcluster (>= 1.2.6), 
    forcats,   
    ggiraph (>= 0.8.9),
    ggplot2,
    ggsignif (>= 0.6.4),
    ggthemes (>= 5.1.0),
    ggrepel,
    ggtree,
    glue (>= 1.7.0),
    gson (>= 0.1.0),
    impute (>= 1.76.0),
    infotheo (>= 1.2.0.1),
    limma,
    magrittr (>= 2.0.3),
    Matrix (>= 1.6.5),
    memoise (>= 2.0.1),
    methods (>= 4.3.0),
    missRanger (>= 2.4.0),
    MultiAssayExperiment (>= 1.28.0),
    patchwork (>= 1.2.0),
    purrr (>= 1.0.2),
    pillar,
    parallel,
    psych,
    qvalue (>= 2.34.0),
    qgraph,
    randomForest (>= 4.7.1.1),
    rlang (>= 1.1.3),
    Rcpp,
    RcppParallel,
    S4Vectors (>= 0.40.1),
    snowfall (>= 1.84.6),
    spsUtil (>= 0.2.2),
    stats (>= 4.3.0),
    stringr (>= 1.5.1),
    SummarizedExperiment (>= 1.32.0),
    tibble,
    tidybulk (>= 1.14.3),
    tidyr,
    utils (>= 4.3.0),
    vegan (>= 2.6.4),
    WGCNA (>= 1.72.5),
    withr (>= 3.0.0),
    xgboost (>= 1.7.5.1),
    yulab.utils (>= 0.1.4)
RoxygenNote: 7.3.2
Suggests: 
    knitr,
    dendextend,  
    rmarkdown,
    ReactomePA,
    ropls (>= 1.34.0),
    metap (>= 1.9),
    AnnotationDbi,
    ActivePathways (>= 2.0.3),
    mitch (>= 1.14.0),
    kableExtra (>= 1.3.4),
    formattable (>= 0.2.1),
    glmnet (>= 4.1.8),
    janitor,
    ggpmisc,
    umap,
    sva
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2024-05-10 12:40:08 UTC; zimlik
Author: Bingdong liu [aut, cre],
  Erqiang Hu [aut, ctb]
Depends: R (>= 4.3.0)
LazyData: FALSE