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main.tex
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\documentclass{documentation}
\usetikzlibrary{arrows}
\makeatletter
\input{preamble}
\makeatother
\begin{document}
\title{\Antioch\ my love}
\version{0}{3}{0}
\date{}
\author{Paul Bauman \and Benjamin Kirk \and Todd Oliver \and Sylvain Plessis \and Roy Stogner}
\maketitle
\tableofcontents
\listoffigures
\listoftables
\part{\Antioch\ from the user's point of view}
\chapter{Intro}
\section{This manual}
\input{generalities}
\chapter{Let's go physical}
\chaptermark{\ANTIOCHPhys}
\label{Antioch:physics}
\section{Preliminary knowledge}
\subsection{Notations for this manual}
\input{notation}
\subsection{Some thoughts on units}
\label{units_in_Antioch}
\input{unit}
\subsection{Useful relations}
\label{relations}
\input{relation}
\section{Chemical kinetics}
\subsection{What is a reaction?}
\label{kinetics_gen}
\input{kinetics_generalities}
\subsection{Kinetics computing}
\label{kinetics_comput}
\input{kinetics_computations}
\section{Full derivations for a chemical kinetics system}
\label{derivations}
\input{derivations_equations}
\section{Transport}
\label{transport}
\subsection{Viscosity}
\label{transport:viscosity}
\input{viscosity}
\subsection{Diffusion}
\label{transport:diffusion}
\input{diffusion}
\subsection{Thermal conduction}
\label{transport:thermal}
\input{thermal_cond}
\subsection{Stockmayer potentials}
\label{transport:Stockmayer}
\input{Stockmayer}
\subsection{From species to mixture}
\label{transport:speci_to_mixture}
\input{transport_mixture}
\chapter{Let's go practical}
\chaptermark{\ANTIOCHPrac}
\label{Antioch:practice}
\section{Defining a mixture we want to play with}
\subsection{Data}
\label{kin:data}
\input{kinetics_data}
\section{The input files}
\subsection{The chemical species}
\label{input:chem_spec}
\input{chemical_species_input}
\subsection{Kinetics}
\input{kinetics_input_file}
\subsection{Transport}
\section{Let's code some kinetics regression}
\input{kinetics_regression}
\section{The \Units\ object}
\input{units_object}
\section{More\dots}
\input{vectorizations}
%%%%%%%%%%%%
%%%
%%% Dev pov
%%%
%%%%%%%%%%%
\part{\Antioch\ from the developper's point of view}
\chapter{Understanding the physics' layout}
\input{code_physical_structure}
\chapter{Global code layout}
\graphAtPaperCenter{code_graph}
\input{code_layout}
\chapter{Core}
\graphAtPaperCenter{core_graph}
\chapter{Thermodynamics}
\graphAtPaperCenter{thermo_graph}
\chapter{Chemistry}
\graphAtPaperCenter{chemistry_graph}
\input{chemistry_dev}
\chapter{Transport}
\graphAtPaperCenter{transport_graph}
\input{transport_dev}
\chapter{Parsing}
\graphAtPaperCenter[height=14cm]{parser_graph}
\input{parser_dev}
\appendix
\part{Appendixes}
\chapter{Demonstrations}
\label{demo}
\input{demonstrations}
\chapter{Units}
\section{List of units supported by \Antioch}
\label{list_units}
\input{list_units}
\section{Goodie code}
\label{unit_goodie}
{\footnotesize
\input{units_goodie}
}
\chapter{Default files}
\label{antioch:defaults_input}
\input{default_files}
\bibliography{ref}
\addcontentsline{toc}{part}{\bibname}
\bibliographystyle{unsrtnat}
\end{document}