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#
# This file is autogenerated by pip-compile with Python 3.10
# by the following command:
#
# pip-compile --output-file=requirements-lock.txt pyproject.toml
#
aiofiles==25.1.0
# via bio-engine (pyproject.toml)
annotated-doc==0.0.4
# via fastapi
annotated-types==0.7.0
# via pydantic
anyio==4.13.0
# via
# httpx
# starlette
asttokens==3.0.1
# via stack-data
async-timeout==5.0.1
# via redis
attrs==26.1.0
# via
# bioutils
# hgvs
biocommons-seqrepo==0.6.11
# via hgvs
biopython==1.87
# via bio-engine (pyproject.toml)
bioutils==0.6.1
# via
# bio-engine (pyproject.toml)
# biocommons-seqrepo
# hgvs
certifi==2026.5.20
# via
# httpcore
# httpx
# requests
charset-normalizer==3.4.7
# via requests
click==8.4.1
# via uvicorn
coloredlogs==15.0.1
# via biocommons-seqrepo
configparser==7.2.0
# via hgvs
decorator==5.3.1
# via ipython
exceptiongroup==1.3.1
# via
# anyio
# ipython
executing==2.2.1
# via stack-data
fastapi==0.136.3
# via bio-engine (pyproject.toml)
greenlet==3.5.1
# via sqlalchemy
h11==0.16.0
# via
# httpcore
# uvicorn
hgvs==1.5.7
# via bio-engine (pyproject.toml)
httpcore==1.0.9
# via httpx
httpx==0.28.1
# via bio-engine (pyproject.toml)
humanfriendly==10.0
# via coloredlogs
idna==3.18
# via
# anyio
# httpx
# requests
importlib-metadata==9.0.0
# via yoyo-migrations
importlib-resources==7.1.0
# via hgvs
ipython==8.39.0
# via
# biocommons-seqrepo
# hgvs
jedi==0.20.0
# via ipython
matplotlib-inline==0.2.2
# via ipython
numpy==2.2.6
# via biopython
orjson==3.11.9
# via bio-engine (pyproject.toml)
parsley==1.3
# via hgvs
parso==0.8.7
# via jedi
pexpect==4.9.0
# via ipython
prompt-toolkit==3.0.52
# via ipython
psycopg2==2.9.12
# via hgvs
psycopg2-binary==2.9.12
# via bio-engine (pyproject.toml)
ptyprocess==0.7.0
# via pexpect
pure-eval==0.2.3
# via stack-data
pydantic==2.13.4
# via
# bio-engine (pyproject.toml)
# fastapi
# pydantic-settings
pydantic-core==2.46.4
# via pydantic
pydantic-settings==2.14.1
# via bio-engine (pyproject.toml)
pygments==2.20.0
# via ipython
pysam==0.24.0
# via biocommons-seqrepo
python-dotenv==1.2.2
# via pydantic-settings
python-multipart==0.0.32
# via bio-engine (pyproject.toml)
redis==8.0.0
# via bio-engine (pyproject.toml)
requests==2.34.2
# via
# biocommons-seqrepo
# bioutils
sqlalchemy==2.0.50
# via bio-engine (pyproject.toml)
sqlparse==0.5.5
# via yoyo-migrations
stack-data==0.6.3
# via ipython
starlette==1.2.1
# via fastapi
tabulate==0.10.0
# via yoyo-migrations
tqdm==4.68.1
# via biocommons-seqrepo
traitlets==5.15.1
# via
# ipython
# matplotlib-inline
typing-extensions==4.15.0
# via
# anyio
# biocommons-seqrepo
# exceptiongroup
# fastapi
# ipython
# pydantic
# pydantic-core
# sqlalchemy
# starlette
# typing-inspection
# uvicorn
typing-inspection==0.4.2
# via
# fastapi
# pydantic
# pydantic-settings
urllib3==2.7.0
# via requests
uvicorn==0.49.0
# via bio-engine (pyproject.toml)
wcwidth==0.8.1
# via prompt-toolkit
yoyo-migrations==9.0.0
# via biocommons-seqrepo
zipp==4.1.0
# via importlib-metadata