diff --git a/bin/align_process_fastqs.sh b/bin/align_process_fastqs.sh deleted file mode 100644 index 47354ab..0000000 --- a/bin/align_process_fastqs.sh +++ /dev/null @@ -1,361 +0,0 @@ -#!/bin/bash - -# align_process_fastqs.sh -# CC, AG? -# Adapted by KA, 2022-1027-1028 - - -# Source functions ----------------------------------------------------------- -check_dependency() { - # Check if program is available in "${PATH}"; exit if not - # - # :param 1: program/package - command -v "${1}" &>/dev/null || - { - echo "Exiting: ${1} not found. Install ${1}." - # exit 1 - } -} - - -check_exit() { - # Check the exit code of a child process - # - # :param 1: exit code = 0> - # :param 2: program/package - if [[ "${1}" == "0" ]]; then - echo "${2} completed: $(date)" - else - err "#ERROR: ${2} returned exit code ${1}" - fi -} - - -err() { - # Print an error meassage, then exit with code 1 - # - # :param 1: program/package - echo "${1} exited unexpectedly" - # exit 1 -} - - -print_usage() { - # Print the help message and exit - echo "${help}" - # exit 1 -} - - -# Handle arguments, assign variables ----------------------------------------- -help=""" -${0} -Align a pair of .fastq files from paired-end sequencing, then sort and compress -the alignments. Then, ... - -Dependencies: - - bowtie2 >= 2.3.4.2 - - samtools >= 1.9 - -Arguments: - -h print this help message and exit - -u use safe mode: \"TRUE\" or \"FALSE\" - -i directory containing infiles, including path - -p prefix for paired-end fastq infiles used with Linux find - -b directory containing Bowtie 2 indices, including path - -r prefix for Bowtie 2 indices - -s path to 'split_bam_paired_end.sh', including name - -o outfile directory, including path; if not found, will be mkdir'd - -t number of threads; options: 1, 2, 4, 8, or 16 -""" - -while getopts "h:u:i:p:b:r:s:o:t" opt; do - case "${opt}" in - h) echo "${help}" && exit ;; - u) safe_mode="${OPTARG}" ;; - i) dir_infiles="${OPTARG}" ;; - p) prefix_infiles="${OPTARG}" ;; - b) dir_indices="${OPTARG}" ;; - r) prefix_indices="${OPTARG}" ;; - s) script="${OPTARG}" ;; - o) outdir="${OPTARG}" ;; - t) threads="${OPTARG}" ;; - *) print_usage ;; - esac -done - -[[ -z "${safe_mode}" ]] && safe_mode=FALSE -[[ -z "${dir_infiles}" ]] && print_usage -[[ -z "${prefix_infiles}" ]] && print_usage -[[ -z "${dir_indices}" ]] && print_usage -[[ -z "${prefix_indices}" ]] && print_usage -[[ -z "${outdir}" ]] && print_usage -[[ -z "${script}" ]] && script="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/bin/split_bam_paired_end.sh" #TODO Address this -[[ -z "${threads}" ]] && threads=16 - -# Assignments for tests (to be commented out) -safe_mode=FALSE -dir_infiles="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1025/fastq" -prefix_infiles="5781_G1_IN_merged" -dir_indices="${HOME}/genomes/combined_SC_KL_20S/Bowtie2" -prefix_indices="combined_SC_KL_20S" -script="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/bin/split_bam_fwd_rev.sh" -outdir="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1025/align_process_fastqs" -threads=1 - -echo "${safe_mode}" -echo "${dir_infiles}" -echo "${prefix_infiles}" -echo "${dir_indices}" -echo "${prefix_indices}" -echo "${script}" -echo "${outdir}" -echo "${threads}" - - -# Check variable and array assignments, and dependencies too ----------------- -echo "" -echo "Running ${0}... " - -# Evaluate "${safe_mode}" #TODO Test if/how this works -case "$(echo "${safe_mode}" | tr '[:upper:]' '[:lower:]')" in - true | t) \ - echo -e "-u: \"Safe mode\" is TRUE.\n" && set -Eeuxo pipefail ;; - false | f) \ - echo -e "-u: \"Safe mode\" is FALSE.\n" ;; - *) \ - echo -e "Exiting: -u \"safe mode\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; -esac - -# Check that "${dir_infiles}" exists -[[ -d "${dir_infiles}" ]] || - { - echo -e "Exiting: -i ${dir_infiles} does not exist.\n" - # exit 1 - } - -# Grab the infiles in the above directory, then check that exactly two files -#+ corresponding to "${dir_infiles}/${prefix_infiles}" are found; throw an -#+ error and exit if not -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - # shellcheck disable=SC2061 - find "${dir_infiles}" \ - -maxdepth 1 \ - -type f \ - -name "${prefix_infiles}"* \ - -print0 \ - | sort -z \ -) - -# Only two fastq infiles should be found (read 1 and read 2); if less than or -#+ more than two are found, then exit with a warning message; at that point, -#+ the user will need to troubleshoot their dir_infiles and/or prefix_infiles -#+ assignments -if [[ "${#infiles[@]}" -eq 0 ]]; then - echo -e "Exiting: -i and/or -p: zero fastq files were found.\n" - # exit 1 -elif [[ "${#infiles[@]}" -lt 2 ]]; then - echo -e "Exiting: -i and/or -p: only one fastq file was found.\n" - # exit 1 -elif [[ "${#infiles[@]}" -gt 2 ]]; then - echo -e "Exiting: -i and/or -p: more than two fastq files were found.\n" - # exit 1 -elif [[ "${#infiles[@]}" -eq 2 ]]; then - : # Do nothing and continue on in the script -fi - -# Report on what the two fastq files are -echo "The fastq infiles are..." -for i in "${infiles[@]}"; do printf %s"\n" " - ${i}"; done -echo "" - -# Check that "${dir_indices}" exists -[[ -d "${dir_indices}" ]] || - { - echo -e "Exiting: -i ${dir_indices} does not exist.\n" - # exit 1 - } - -# Check that index files with "${prefix_indices}" exist -unset indices -typeset -a indices -while IFS=" " read -r -d $'\0'; do - indices+=( "${REPLY}" ) -done < <(\ - # shellcheck disable=SC2061 - find "${dir_indices}" \ - -maxdepth 1 \ - -type f \ - -name "${prefix_indices}"* \ - -print0 \ - | sort -z \ -) - -# Six Bowtie 2 index files should be found; if less than or more than six are -#+ found, then exit with a warning message; at that point, the user will need -#+ to troubleshoot their dir_indices and/or prefix_indices assignments -if [[ "${#indices[@]}" -eq 0 ]]; then - echo -e "Exiting: -b and/or -r: zero Bowtie 2 index files were found.\n" - # exit 1 -elif [[ "${#indices[@]}" -lt 6 ]]; then - echo -e "Exiting: -b and/or -r: less than six Bowtie 2 index files were found.\n" - # exit 1 -elif [[ "${#indices[@]}" -gt 6 ]]; then - echo -e "Exiting: -b and/or -r: more than six Bowtie 2 index files were found.\n" - # exit 1 -elif [[ "${#indices[@]}" -eq 6 ]]; then - : # Do nothing and continue on in the script -fi - -# Report on what the index files are -echo "The Bowtie 2 index infiles are..." -for i in "${indices[@]}"; do printf %s"\n" " - ${i}"; done -echo "" - -# Assign variable for use when calling Bowtie 2 -bowtie2_indices="${dir_indices}/${prefix_indices}" -# echo "${bowtie2_indices}" - -# Make "${outdir}" if it doesn't exist -[[ -d "${outdir}" ]] || - { - echo -e "-o: Directory ${outdir} does not exist; making the directory.\n" - mkdir -p "${outdir}" - } - -[[ -d "${outdir}/bam" ]] || - { - echo -e "-o: Directory ${outdir}/bam does not exist; making the directory.\n" - mkdir -p "${outdir}/bam" - } - -[[ -d "${outdir}/bw" ]] || - { - echo -e "-o: Directory ${outdir}/bw does not exist; making the directory.\n" - mkdir -p "${outdir}/bw" - } - -# Check on the specified (or default) number of threads -case "${threads}" in - 1 | 2 | 4 | 8 | 16) : ;; # Do nothing and move on - *) \ - echo -e "Exiting: -p ${threads} must be either 1, 2, 4, 8, or 16.\n" - # exit 1 - ;; -esac - -# Apportion threads for Bowtie 2 and samtools based on the value assigned to -#+ "${threads}" -if [[ "${threads}" -eq 1 ]]; then - threads_bowtie2=1 - threads_sort=1 -elif [[ "${threads}" -eq 2 ]]; then - threads_bowtie2=2 - threads_sort=1 -elif [[ "${threads}" -eq 4 ]]; then - threads_bowtie2=3 - threads_sort=1 -elif [[ "${threads}" -eq 8 ]]; then - threads_bowtie2=7 - threads_sort=1 -elif [[ "${threads}" -eq 16 ]]; then - threads_bowtie2=14 - threads_sort=2 -fi - -echo "" - -# Load and then check for necessary dependencies; exit if not found -modules=( - "Bowtie2/2.4.4-GCC-11.2.0" - "SAMtools/1.16.1-GCC-11.2.0" - "deepTools/3.5.1-foss-2021b" - "BamTools/2.5.2-GCC-11.2.0" -) -for i in "${modules[@]}"; do ml "${i}"; done -check_dependency bowtie2 -check_dependency samtools -check_dependency deeptools -check_dependency bamtools - - -# Run Bowtie 2 and samtools -------------------------------------------------- -bowtie2 \ - -p "${threads_bowtie2}" \ - -x "${bowtie2_indices}" \ - -1 "${infiles[0]}" \ - -2 "${infiles[1]}" \ - --trim5 1 \ - --local \ - --very-sensitive-local \ - --no-unal \ - --no-mixed \ - --no-discordant \ - --phred33 \ - -I 10 \ - -X 700 \ - --no-overlap \ - --no-dovetail \ - | samtools sort \ - -@ "${threads_sort}" \ - -l 0 \ - -O "bam" \ - | samtools view \ - -@ "${threads}" \ - -O "bam" \ - -o "${outdir}/bam/$(basename "${infiles[0]%_R1*fastq}.bam")" - -samtools index \ - -@ "${threads}" \ - "${outdir}/bam/$(basename "${infiles[0]%_R1*fastq}.bam")" - - -# Run ... #TBC -# Run split_bam_paired_end.sh ------------------------------------------------ -bash "${script}" -u FALSE -i -o #TBC - - - - -# Copy results to output before cleanup -for expected_result in ${expected_results}; do - ${wrap} cp ${expected_result} ${output_directory}/ -done - -logNoExec " /\ /\\" -logNoExec " (=' '=)" -cd "${rundir}" -# done - -cd $output_directory -mkdir strand_specific_bams -for expected_result in *.bam; do - ${wrap} "${script}" ${expected_result} ${output_directory} - ${wrap} mv *_rev*.bam strand_specific_bams - ${wrap} mv *_fwd*.bam strand_specific_bams -done - -cd strand_specific_bams -mkdir BigWigs - -# Generate outputs: bigwig file containing all fragment sizes and a plot of -#+ the fragment size distribution up to 1000 bp -${wrap} bamCoverage -b ${sample_name}*_rev*.bam -o ${sample_name}_cov_rev.bw -${wrap} bamCoverage -b ${sample_name}*_fwd*.bam -o ${sample_name}_cov_fwd.bw -${wrap} bamCoverage --normalizeUsing RPKM --minMappingQuality 3 -b ${sample_name}*_rev*.bam -o ${sample_name}_cov_rev_rpkmnorm.bw -${wrap} bamCoverage --normalizeUsing RPKM --minMappingQuality 3 -b ${sample_name}*_fwd*.bam -o ${sample_name}_cov_fwd_rpkmnorm.bw -# ${wrap} bamPEFragmentSize -hist ${sample_name}_fragmentSize.png --maxFragmentLength 1000 -b ${sample_name}_sorted.bam - - for expected_result_2 in ${expected_results_2}; do - ${wrap} cp ${expected_result_2} ${output_directory_bw}/ - done - - logNoExec " /\ /\\" - logNoExec " (=' '=)" -done diff --git a/bin/calculate_length-coding.py b/bin/calculate_length-coding.py deleted file mode 100644 index 4d66abd..0000000 --- a/bin/calculate_length-coding.py +++ /dev/null @@ -1,191 +0,0 @@ -#!/usr/bin/env python -# -*- coding: utf-8 -*- -""" -coding_lengths.py -Kamil Slowikowski -2014-0207 - -Modified: Kris Alavattam -2022-0904 - -Count the number of coding base pairs in each GENCODE gene. - -GENCODE coordinates, including all exons with Ensembl identifiers. -(GENCODE release 17 corresponds to hg19) - ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_human/release_19/gencode.v19.annotation.gtf.gz - ftp://ftp.sanger.ac.uk/pub/gencode/release_17/gencode.v17.annotation.gtf.gz - chr1 HAVANA gene 11869 14412 . + . gene_id "ENSG00000223972.4"; - chr1 HAVANA transcript 11869 14409 . + . gene_id "ENSG00000223972.4"; - chr1 HAVANA exon 11869 12227 . + . gene_id "ENSG00000223972.4"; - chr1 HAVANA exon 12613 12721 . + . gene_id "ENSG00000223972.4"; - chr1 HAVANA exon 13221 14409 . + . gene_id "ENSG00000223972.4"; -NCBI mapping from Entrez GeneID to Ensembl identifiers. - ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2ensembl.gz - 9606 1 ENSG00000121410 NM_130786.3 ENST00000263100 NP_570602.2 ENSP00000263100 - 9606 2 ENSG00000175899 NM_000014.4 ENST00000318602 NP_000005.2 ENSP00000323929 - 9606 3 ENSG00000256069 NR_040112.1 ENST00000543404 - - - 9606 9 ENSG00000171428 NM_000662.5 ENST00000307719 NP_000653.3 ENSP00000307218 - 9606 9 ENSG00000171428 XM_005273679.1 ENST00000517492 XP_005273736.1 ENSP00000429407 -Output: - Ensembl_gene_identifier GeneID length - ENSG00000000005 64102 1339 - ENSG00000000419 8813 1185 - ENSG00000000457 57147 3755 - ENSG00000000938 2268 3167 - -USAGE: - coding_lengths.py -g FILE -n FILE [-o FILE] - -OPTIONS: - -h Show this help message. - -g FILE GENCODE annotation.gtf.gz file. - -n FILE NCBI gene2ensembl.gz file. - -o FILE Output file (gzipped). -""" - - -import GTF # https://gist.github.com/slowkow/8101481 - -from docopt import docopt -import pandas as pd -import gzip -import time -import sys -from contextlib import contextmanager - - -def main(args): - """ - #TODO Some description of the script. - - Parameters - ---------- - #TODO Some description of the parameters. - """ - # Input files. - GENCODE = args['-g'] - NCBI_ENSEMBL = args['-n'] - - # Output file prefix. - GENE_LENGTHS = args['-o'] or "ncbi_ensembl_coding_lengths.txt.gz" - - with log("Reading the GENCODE annotation file: {}".format(GENCODE)): - gc = GTF.dataframe(GENCODE) - - # Select just exons of protein coding genes, and columns that we want to - # use. - idx = (gc.feature == 'exon') & (gc.transcript_type == 'protein_coding') - exon = gc.ix[idx, ['seqname', 'start', 'end', 'gene_id', 'gene_name']] - - # Convert columns to proper types. - exon.start = exon.start.astype(int) - exon.end = exon.end.astype(int) - - # Sort in place. - exon.sort(['seqname', 'start', 'end'], inplace=True) - - # Group the rows by the Ensembl gene identifier (with version numbers.) - groups = exon.groupby('gene_id') - - with log("Calculating coding region (exonic) length for each gene..."): - lengths = groups.apply(count_bp) - - with log( - "Reading NCBI mapping of Entrez GeneID " - "to Ensembl gene identifier: {}".format(NCBI_ENSEMBL) - ): - g2e = pd.read_table( - NCBI_ENSEMBL, - compression="gzip", - header=None, - names=[ - 'tax_id', - 'GeneID', - 'Ensembl_gene_identifier', - 'RNA_nucleotide_accession.version', - 'Ensembl_rna_identifier', - 'protein_accession.version', - 'Ensembl_protein_identifier' - ] - ) - - # Create a new DataFrame with gene lengths and EnsemblID. - ensembl_no_version = lengths.index.map(lambda x: x.split(".")[0]) - ldf = pd.DataFrame( - { - 'length': lengths, - 'Ensembl_gene_identifier': ensembl_no_version - }, - index=lengths.index - ) - - # Merge so we have EntrezGeneID with length. - m1 = pd.merge(ldf, g2e, on='Ensembl_gene_identifier') - m1 = m1[['Ensembl_gene_identifier', 'GeneID', 'length']].drop_duplicates() - - with log("Writing output file: {}".format(GENE_LENGTHS)): - with gzip.open(GENE_LENGTHS, "wb") as out: - m1.to_csv(out, sep="\t", index=False) - - -def count_bp(df): - """ - Return the total number of coding bases in that gene. - - Makes use of a DataFrame with the exon coordinates from GENCODE for a - single gene. - - Parameters - ---------- - #TODO Some description of the parameters. - - Example - ------- - >>> import numpy as np - >>> n = 3 - >>> r = lambda x: np.random.sample(x) * 10 - >>> d = pd.DataFrame([np.sort([a,b]) for a,b in zip(r(n), r(n))], columns=['start','end']).astype(int) - >>> d - start end - 0 6 9 - 1 3 4 - 2 4 9 - >>> count_bp(d) - 7 - Here is a visual representation of the 3 exons and the way they are added: - 123456789 Length - 0 ---- 4 - 1 -- 2 - 2 ------ 6 - ======= 7 - """ - start = df.start.min() - end = df.end.max() - bp = [False] * (end - start + 1) - for i in range(df.shape[0]): - s = df.iloc[i]['start'] - start - e = df.iloc[i]['end'] - start + 1 - bp[s:e] = [True] * (e - s) - return sum(bp) - - -@contextmanager -def log(message): - """ - Log a timestamp, a message, and the elapsed time to stderr. - - Parameters - ---------- - #TODO Some description of the parameters. - """ - start = time.time() - sys.stderr.write("{} # {}\n".format(time.asctime(), message)) - yield - elapsed = int(time.time() - start + 0.5) - sys.stderr.write("{} # done in {} s\n".format(time.asctime(), elapsed)) - sys.stderr.flush() - - -if __name__ == '__main__': - args = docopt(__doc__) - main(args) diff --git a/bin/calculate_length-introns.awk b/bin/calculate_length-introns.awk deleted file mode 100755 index 9f31537..0000000 --- a/bin/calculate_length-introns.awk +++ /dev/null @@ -1,163 +0,0 @@ -#!/usr/bin/awk -f -# NAME -# intron-length.awk - report intron lengths from GFF3 input -# -# SYNOPSIS -# intron-length.awk [TYPE=CDS|exon] -# [SHOW_FLANKING=1] -# [WARN_INTRON_LESS_THAN=min_intron_length] -# [WARN_INTRON_GREATER_THAN=max_intron_length] -# [GFF...] -# -# DESCRIPTION -# Reports the minimum intron length, maximum intron length, and the -# maximum sum-of-intron-lengths among all mRNA features. Intron lengths -# are calculated from gaps between features of type TYPE. -# -# OPTIONS -# TYPE -# GFF3 type (3rd-column); valid values are "CDS" and "exon" (default). -# Introns are calculated as gaps between features if this type. -# -# SHOW_FLANKING -# If set to 1, the features of type TYPE flanking the smallest & -# largest introns are output to stderr. The first detected flanking -# features for the given intron size are reported. -# -# WARN_INTRON_LESS_THAN=min_intron_length -# Issue a warning & print flanking features to stderr if an intron -# smaller than min_intron_length is detected. Does not affect the -# reported minimum intron size. -# -# WARN_INTRON_GREATER_THAN=max_intron_length -# Issue a warning & print flanking features to stderr if an intron -# longer than max_intron_length is detected. Does not affect the -# reported maximum intron size. -# -# OPERANDS -# GFF -# A GFF3 file containing at least mRNA and CDS or exon features. -# Parent mRNA features are assumed to appear in the file before any -# children CDS/exon features. "-" strand CDS/exon features are assumed -# to be listed in descending genomic order, while "+" strand CDS/exon -# features are assumed to be listed in ascending genomic order. -# Features not of type "mRNA" or the user-specified TYPE (assumed to -# be "CDS" or "exon") are ignored. -# -# STDIN -# Standard input will be used if no input file is specified, or if a file -# is '-'. -# -# STDOUT -# Three tab-separated integers: -# MINIMUM_INTRON_LENGTH MAXIMUM_INTRON_LENGTH MAXIMUM_SUM_INTRON_LENGTHS -# -# APPLICATION USAGE -# The output can be used to supply values to the the gmap -# --min-intronlength, --intronlength, and --totallength options. -# -# EXAMPLES -# $ cat test.gff -# ##gff-version 3 -# Gm03 Glyma1 gene 3629021 3632958 1 + . ID=Glyma03g03790;Name=Glyma03g03790 -# Gm03 Glyma1 mRNA 3629021 3632958 1 + . ID=Glyma03g03790.1;Name=Glyma03g03790.1;Parent=Glyma03g03790 -# Gm03 Glyma1 five_prime_utr 3629021 3629084 1 + . Parent=Glyma03g03790.1 -# Gm03 Glyma1 CDS 3629085 3629477 1 + 0 Parent=Glyma03g03790.1 -# Gm03 Glyma1 CDS 3630569 3630670 1 + 0 Parent=Glyma03g03790.1 -# Gm03 Glyma1 CDS 3630773 3630910 1 + 0 Parent=Glyma03g03790.1 -# Gm03 Glyma1 CDS 3631019 3631079 1 + 0 Parent=Glyma03g03790.1 -# Gm03 Glyma1 CDS 3632021 3632145 1 + 1 Parent=Glyma03g03790.1 -# Gm03 Glyma1 three_prime_utr 3632623 3632958 1 + . Parent=Glyma03g03790.1 -# Gm03 Glyma1 CDS 3632563 3632622 1 + 0 Parent=Glyma03g03790.1 -# Gm01 Glyma1 gene 8775304 8775489 0 - . ID=Glyma01g07880;Name=Glyma01g07880 -# Gm01 Glyma1 mRNA 8775304 8775489 0 - . ID=Glyma01g07880.1;Name=Glyma01g07880.1 -# Gm01 Glyma1 CDS 8775373 8775489 0 - 0 Parent=Glyma01g07880.1 -# Gm01 Glyma1 CDS 8775304 8775318 0 - 0 Parent=Glyma01g07880.1 -# $ intron-length.awk TYPE=CDS test.gff -# 54 1091 2659 -# -# FUTURE DIRECTIONS -# five_prime_utr/three_prime_utr features will likely be supported in the -# future for TYPE=CDS. -# -# SEE ALSO -# GMAP (http://research-pub.gene.com/gmap/) -# -# CHANGE HISTORY -# 2014-10-29 Handle gene features without mRNA subfeatures. -# 2013-04-11 Renamed option REPORT_FLANKING to SHOW_FLANKING. -# 2013-04-10 Report the largest sum-of-intron-lengths seen for any -# mRNA feature. -# Added TYPE option. -# REPORT_CDS option renamed to SHOW_FLANKING. -# 2013-02-05 Added the REPORT_CDS, WARN_INTRON_LESS_THAN, and -# WARN_INTRON_GREATER_THAN options. -# -# AUTHOR -# Nathan Weeks - -BEGIN { - FS = OFS = "\t" - stderr = "cat 1>&2" - max_intron_length = 0 - min_intron_length = 9999999999 -} - -/^#/ || NF == 0 { next } # comments, pragmas, and blank lines - -$3 == "mRNA" || $3 == "gene" { start = end = total_intron_length = 0 } - -TYPE ? $3 == TYPE : $3 == "exon" { - if ($7 == "-") { - intron_length = (end ? end - $5 - 1 : 0) - end = $4 # end <- start of this feature - } else { - intron_length = (start ? $4 - start - 1 : 0) - start = $5 # start <- end of this feature - } - - total_intron_length += intron_length - - if (total_intron_length > max_sum_intron_lengths) - max_sum_intron_lengths = total_intron_length - - if (intron_length > 0 && intron_length < min_intron_length) { - min_intron_length = intron_length - min_intron_feature1 = prev_feature - min_intron_feature2 = $0 - } - if (intron_length > max_intron_length) { - max_intron_length = intron_length - max_intron_feature1 = prev_feature - max_intron_feature2 = $0 - } - - if (intron_length > 0 && intron_length < WARN_INTRON_LESS_THAN) { - print "intron length (" intron_length ") < WARN_INTRON_LESS_THAN (" \ - WARN_INTRON_LESS_THAN "):" | stderr - print prev_feature | stderr - print $0 | stderr - } - - if (WARN_INTRON_GREATER_THAN && intron_length > WARN_INTRON_GREATER_THAN) { - print "intron length (" intron_length ") > WARN_INTRON_GREATER_THAN (" \ - WARN_INTRON_GREATER_THAN "):" | stderr - print prev_feature | stderr - print $0 | stderr - } - - prev_feature = $0 -} - - -END { - print min_intron_length, max_intron_length, max_sum_intron_lengths - if (SHOW_FLANKING) { - print "min intron (" min_intron_length "):" | stderr - print min_intron_feature1 | stderr - print min_intron_feature2 | stderr - print "max intron (" max_intron_length "):" | stderr - print max_intron_feature1 | stderr - print max_intron_feature2 | stderr - } -} diff --git a/bin/downsample_fastqs.sh b/bin/downsample_fastqs.sh deleted file mode 100644 index 68852bd..0000000 --- a/bin/downsample_fastqs.sh +++ /dev/null @@ -1,324 +0,0 @@ -#!/bin/bash - -# downsample_fastqs.sh -# KA - - -check_dependency() { - what=""" - check_dependency() - ------------------ - Check if program is available in \"\${PATH}\"; exit if not - - :param 1: program to be checked - :return: NA - """ - if [[ -z "${1}" ]]; then - printf "%s\n" "${what}" - else - command -v "${1}" &>/dev/null || - { - printf "%s\n" "Exiting: \"${1}\" not found in \"\${PATH}\"." - printf "%s\n\n" " Check your env or install \"${1}\"?" - # exit 1 - } - fi -} - - -check_argument_safe_mode() { - what=""" - check_argument_safe_mode() - -------------------------- - Run script in \"safe mode\" (\`set -Eeuxo pipefail\`) if specified - - :param 1: run script in safe mode: TRUE or FALSE [default: FALSE] - :return: NA - - #TODO Check that param is not empty or inappropriate format/string - """ - case "$(convert_chr_lower "${1}")" in - true | t) \ - printf "%s\n" "-u: \"Safe mode\" is TRUE." - set -Eeuxo pipefail - ;; - false | f) \ - printf "%s\n" "\"Safe mode\" is FALSE." ;; - *) \ - printf "%s\n" "Exiting: \"Safe mode\" must be TRUE or FALSE." - # exit 1 - ;; - esac -} - - -check_exists_file() { - what=""" - check_exists_file() - ------------------- - Check that a file exists; exit if it doesn't - - :param 1: file, including path - :return: NA - - #TODO Check that param is not an inappropriate format/string - """ - if [[ -z "${1}" ]]; then - printf "%s\n" "${what}" - elif [[ ! -f "${1}" ]]; then - printf "%s\n\n" "Exiting: File \"${1}\" does not exist." - # exit 1 - else - : - fi -} - - -check_exists_directory() { - what=""" - check_exists_directory() - ------------------------ - Check that a directory exists; if it doesn't, then either make it or exit - - :param 1: create directory if not found: TRUE or FALSE - :param 2: directory, including path - :return: NA - - #TODO Check that params are not empty or inappropriate formats/strings - """ - case "$(convert_chr_lower "${1}")" in - true | t) \ - [[ -d "${2}" ]] || - { - printf "%s\n" "${2} doesn't exist; mkdir'ing it." - mkdir -p "${2}" - } - ;; - false | f) \ - [[ -d "${2}" ]] || - { - printf "%s\n" "Exiting: ${2} does not exist." - # exit 1 - } - ;; - *) \ - printf "%s\n" "Exiting: param 1 is not \"TRUE\" or \"FALSE\"." - printf "%s\n" "${what}" - # exit 1 - ;; - esac -} - - -check_argument_downsample() { - what=""" - check_argument_downsample() - --------------- - Check the downsampling value assigned to variable in script - - :param 1: value assigned to variable for downsampling = 1> - :return: NA - - #TODO Checks... - """ - case "${1}" in - '' | *[!0-9]*) \ - printf "%s\n" "Exiting: argument must be an integer >= 1." - # exit 1 - ;; - *) : ;; - esac -} - - -convert_chr_lower() { - what=""" - convert_chr_lower() - ------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string (stdout) - """ - if [[ -z "${1}" ]]; then - printf "%s\n" "${what}" - else - string_in="${1}" - string_out="$(printf %s "${string_in}" | tr '[:upper:]' '[:lower:]')" - - echo "${string_out}" - fi -} - - -print_usage() { - what=""" - print_usage() - ------------- - Print the script's help message and exit - - :param 1: help message assigned to a variable within script - :return: help message (stdout) - - #TODO Checks... - """ - echo "${1}" - exit 1 -} - - -check_etc() { - what=""" - check_etc() - ----------- - Check depencies, and check and make variable assignments - - #TODO Checks, etc., and a means to print the contents of variable what - - :global safe_mode: - :global infile_1: - :global infile_2: - :global outdir: - :global downsample: - :return global stem_1: - :return global stem_2: - :return global extension: - :return global outfile_1: - :return global outfile_2: - """ - # Check for necessary dependencies; exit if not found - check_dependency reformat.sh - - # Evaluate "${safe_mode}" - check_argument_safe_mode "${safe_mode}" - - # Check that "${infile_1}" and "${infile_2}" exists - check_exists_file "${infile_1}" - check_exists_file "${infile_2}" - #TODO 1/2 Some kind of check that "${infile_1}" and "${infile_2}" are an - #TODO 2/2 appropriate pair - - # If TRUE exist, then make "${outdir}" if it does not exist; if FALSE, - #+ then exit if "${outdir}" does not exist - check_exists_directory TRUE "${outdir}" - - # Check on value assigned to "${downsample}" - check_argument_downsample "${downsample}" - - #TODO Not sure if I want these assignments in this function... - local pen - local ult - - ult="$(echo "${infile_1}" | awk -F "." '{ print $NF }')" - pen="$(echo "${infile_1}" | awk -F "." '{ print $(NF - 1) }')" - - if [[ "${ult}" == "gz" ]]; then - if [[ "${pen}" == "fq" || "${pen}" == "fastq" ]]; then - stem_1="$(basename "${infile_1%."${pen}"."${ult}"}")" - stem_2="$(basename "${infile_2%."${pen}"."${ult}"}")" - extension="sample-${downsample}.${pen}.${ult}" - outfile_1="${outdir}/${stem_1}.${extension}" - outfile_2="${outdir}/${stem_2}.${extension}" - else - echo "Exiting: Penultimate extension must be \"fq\" or \"fastq\"" - # exit 1 - fi - elif [[ "${ult}" == "fq" || "${ult}" == "fastq" ]]; then - stem_1="$(basename "${infile_1%."${ult}"}")" - stem_2="$(basename "${infile_2%."${ult}"}")" - extension="sample-${downsample}.${ult}.gz" - outfile_1="${outdir}/${stem_1}.${extension}" - outfile_2="${outdir}/${stem_2}.${extension}" - else - echo "Exiting: Extension must be \"gz\", \"fq\", or \"fastq\"" - # exit 1 - fi - - echo "" -} - - -main() { - what=""" - main() - ------ - Run reformat.sh (BBMap) - - #TODO Checks, etc., and a means to print the contents of variable what - - :global infile_1: - :global infile_2: - :global outfile_1: - :global outfile_2: - :global downsample: - :return: file \"\${outfile_1}\" - :return: file \"\${outfile_2}\" - """ - reformat.sh \ - in1="${infile_1}" \ - in2="${infile_2}" \ - out1="${outfile_1}" \ - out2="${outfile_2}" \ - samplereadstarget="${downsample}" -} - - -# ------------------------------------ -# Handle arguments -# ------------------------------------ -help=""" -# ------------------------------------ -# downsample_fastqs.sh -# ------------------------------------ -Randomly extract a subset of read pairs from paired-end fastq files. Number of -read pairs to be extracted is specified by the user. Script does not allow for -upsampling. Name(s) of outfile(s) will be derived from the infile. Outfiles -will gzip'd. - -Dependencies: - - reformat.sh (part of BBMap) >= version #TBD - -Arguments: - -u safe_mode use safe mode: TRUE or FALSE [default: FALSE] - -1 infile_1 \"first\" fastq infile, including path - -2 infile_2 \"second\" fastq infile, including path - -o outdir outfile directory, including path; if not found, will be - mkdir'd - -d downsample number of read pairs to sample = 0> -""" - -while getopts "u:1:2:o:d:" opt; do - case "${opt}" in - u) safe_mode="${OPTARG}" ;; - 1) infile_1="${OPTARG}" ;; - 2) infile_2="${OPTARG}" ;; - o) outdir="${OPTARG}" ;; - d) downsample="${OPTARG}" ;; - *) print_usage "${help}" ;; - esac -done - -[[ -z "${safe_mode}" ]] && safe_mode=FALSE -[[ -z "${infile_1}" ]] && print_usage "${help}" -[[ -z "${infile_2}" ]] && print_usage "${help}" -[[ -z "${outdir}" ]] && print_usage "${help}" -[[ -z "${downsample}" ]] && print_usage "${help}" - -#TEST (2023-0209) -# safe_mode=FALSE -# infile_1="./results/2023-0115/fastqs_UMI-dedup/rcorrector/5781_G1_IN_S5_R1.UMI.atria.cor.fq.gz" -# infile_2="./results/2023-0115/fastqs_UMI-dedup/rcorrector/5781_G1_IN_S5_R3.UMI.atria.cor.fq.gz" -# outdir="." -# downsample=50000 - - -# ------------------------------------ -# Check dependencies, and check and make variable assignments -# ------------------------------------ -check_etc - - -# ------------------------------------ -# Run reformat.sh (BBMap) -# ------------------------------------ -main diff --git a/bin/filter_rCorrector-treated-fastqs.py b/bin/filter_rCorrector-treated-fastqs.py deleted file mode 100755 index a0f21c4..0000000 --- a/bin/filter_rCorrector-treated-fastqs.py +++ /dev/null @@ -1,253 +0,0 @@ -#!/usr/bin/env python3 -# -*- coding: utf-8 -*- -""" -author: adam h freedman -afreedman405 at gmail.com -date: Fri Aug 26 10:55:18 EDT 2016 - -updated, edited by Kris Aalavattam -kalavatt at fredhutch.org -kalavattam at gmail.com -date: Tue Nov 29 06:41:46 PST 2022 - -This script, which has been updated from its original Python 2 to 3, takes as -input Rcorrector error-corrected Illumina paired-end reads in fastq format and -does the following: - - 1. The script removes any reads that Rcorrector indentifed as containing an - error that can't be corrected, typically low complexity sequences. For - these, the fastq header contains 'unfixable'. - - 2. To avoid issues created by certain header formats for downstream tools, - the script strips the ' cor' from headers of reads that Rcorrector - fixed. - - 3. The script writes a log with counts of - (a) read pairs that were removed because one or both ends are unfixable, - (b) corrected left and right reads, and - (c) total numbers of read pairs containing at least one corrected read. - -The script handles only paired-end reads. Also, the script handles either -unzipped or gzipped files on the fly, so long as the gzipped files end with -with the extension 'gz'. The script can write either uncompressed or gzipped -fastq outfiles. -""" - -import sys -import gzip -from itertools import zip_longest -import argparse -import os -from os.path import basename - -def get_input_streams(r1file,r2file): - if r1file[-2:]=='gz': - r1handle = gzip.open(r1file,'rt') - r2handle = gzip.open(r2file,'rt') - else: - r1handle = open(r1file,'r') - r2handle = open(r2file,'r') - - return r1handle,r2handle - - -def grouper(iterable, n, fillvalue=None): - "Collect data into fixed-length chunks or blocks" - args = [iter(iterable)] * n - return zip_longest(fillvalue=fillvalue, *args) - - -if __name__=="__main__": - parser = argparse.ArgumentParser( - description='Options for filtering, logging rCorrector fastq output' - ) - parser.add_argument( - '-1', - '--reads_left', - dest='reads_left', - type=str, - help='R1 fastq infile (gzipped or not), including path' - ) - parser.add_argument( - '-2', - '--reads_right', - dest='reads_right', - type=str, - help='R2 fastq infile (gzipped or not), including path' - ) - parser.add_argument( - '-s', - '--sample_id', - dest='sample_id', - type=str, - help='sample name to write to log file' - ) - parser.add_argument( - '-o', - '--dir_out', - dest='dir_out', - type=str, - help='outfile directory, including path' - ) - parser.add_argument( - '-g', - '--gzip_out', - dest='gzip_out', - default=True, - type=bool, - help='write gzipped fastq outfiles (True or False)', - ) - opts = parser.parse_args() - - # # Test (2023-0206) - # parser = argparse.ArgumentParser( - # description='Options for filtering, logging rCorrector fastq output' - # ) - # opts = parser.parse_args() - # opts.reads_left="./5781_G1_IN_S5_R1.UMI.atria.cor.fq.gz" - # opts.reads_right="./5781_G1_IN_S5_R3.UMI.atria.cor.fq.gz" - # opts.sample_id="5781_G1_IN_S5" - # opts.dir_out=os.getcwd() + '/' + 'tmp' - # opts.gzip_out=True - - if opts.gzip_out is False: - #TODO 1/5 Below assumes the infile ends with either the suffix - #TODO 2/5 '.fastq.gz' or the suffix '.fq.gz' (or 'something.something' - #TODO 3/5 because of [:-2]); so, write code to check if ending suffix - #TODO 4/5 is or is not '.gz', then handle the below join/split - #TODO 5/5 appropriately - r1out = open( - opts.dir_out + '/' '%s.rm-unfx.%s' \ - % (".".join(basename(opts.reads_left).split(".")[:-2]), "fq"), - 'w' - ) - r2out = open( - opts.dir_out + '/' '%s.rm-unfx.%s' \ - % (".".join(basename(opts.reads_right).split(".")[:-2]), "fq"), - 'w' - ) - elif opts.gzip_out is True: - r1out = gzip.open( - opts.dir_out + '/' '%s.rm-unfx.%s' \ - % ( - ".".join(basename(opts.reads_left).split(".")[:-2]), - "fq.gz" - ), - 'wt' - ) - r2out = gzip.open( - opts.dir_out + '/' '%s.rm-unfx.%s' \ - % ( - ".".join(basename(opts.reads_right).split(".")[:-2]), - "fq.gz" - ), - 'wt' - ) - else: - sys.exit('Exiting: --opts.gzip_out must be either True or False') - - r1_cor_count = 0 - r2_cor_count = 0 - pair_cor_count = 0 - unfix_r1_count = 0 - unfix_r2_count = 0 - unfix_both_count = 0 - - r1_stream, r2_stream = get_input_streams(opts.reads_left, opts.reads_right) - - with r1_stream as f1, r2_stream as f2: - R1 = grouper(f1, 4) - R2 = grouper(f2, 4) - counter = 0 - for entry in R1: - counter += 1 - if counter%100000 == 0: - print("%s reads processed" % counter) - - head1,seq1,placeholder1,qual1=[i.strip() for i in entry] - head2,seq2,placeholder2,qual2=[j.strip() for j in next(R2)] - - if 'unfixable' in head1 and 'unfixable' not in head2: - unfix_r1_count += 1 - elif 'unfixable' in head2 and 'unfixable' not in head1: - unfix_r2_count += 1 - elif 'unfixable' in head1 and 'unfixable' in head2: - unfix_both_count += 1 - else: - if 'cor' in head1: - r1_cor_count += 1 - if 'cor' in head2: - r2_cor_count += 1 - if 'cor' in head1 or 'cor' in head2: - pair_cor_count += 1 - - head1=head1.split('l:')[0][:-1] - head2=head2.split('l:')[0][:-1] - r1out.write('%s\n' % '\n'.join( - [head1, seq1, placeholder1, qual1] - )) - r2out.write('%s\n' % '\n'.join( - [head2, seq2, placeholder2, qual2] - )) - - total_unfixable = unfix_r1_count + unfix_r2_count + unfix_both_count - total_retained = counter - total_unfixable - - unfix_log = open( - opts.dir_out + '/' + opts.sample_id + '.counts.txt', 'w' - ) - unfix_log.write( - ( - 'total PE reads\t%s\n' - 'removed PE reads\t%s\n' - 'retained PE reads\t%s\n' - 'R1 corrected\t%s\n' - 'R2 corrected\t%s\n' - 'pairs corrected\t%s\n' - 'R1 unfixable\t%s\n' - 'R2 unfixable\t%s\n' - 'both reads unfixable\t%s\n' - ) % ( - counter, - total_unfixable, - total_retained, - r1_cor_count, - r2_cor_count, - pair_cor_count, - unfix_r1_count, - unfix_r2_count, - unfix_both_count - ) - ) - - unfix_pct=open( - opts.dir_out + '/' + opts.sample_id + '.proportions.txt', 'w' - ) - unfix_pct.write( - ( - 'total PE reads\t%s\n' - 'removed PE reads\t%s\n' - 'retained PE reads\t%s\n' - 'R1 corrected\t%s\n' - 'R2 corrected\t%s\n' - 'pairs corrected\t%s\n' - 'R1 unfixable\t%s\n' - 'R2 unfixable\t%s\n' - 'both reads unfixable\t%s\n' - ) % ( - (counter / counter) * 100, - (total_unfixable / counter) * 100, - (total_retained / counter) * 100, - (r1_cor_count / counter) * 100, - (r2_cor_count / counter) * 100, - (pair_cor_count / counter) * 100, - (unfix_r1_count / counter) * 100, - (unfix_r2_count / counter) * 100, - (unfix_both_count / counter) * 100 - ) - ) - - r1out.close() - r2out.close() - unfix_log.close() - unfix_pct.close() diff --git a/bin/make_rRNA_interval-list.sh b/bin/make_rRNA_interval-list.sh deleted file mode 100644 index 69c7c1b..0000000 --- a/bin/make_rRNA_interval-list.sh +++ /dev/null @@ -1,91 +0,0 @@ -#!/usr/bin/env bash - -# make_rRNA.sh -# Kamil Slowikowski -# 2014-1212 -# -# Modified: -# Arindam Ghosh -# 2019-0724 -# -# Modified: -# Kris Alavattam -# 2022-0902 -# -# Make an interval_list file suitable for picard CollectRnaSeqMetrics.jar. -# -# Picard Tools CollectRnaSeqMetrics.jar: -# broadinstitute.github.io/picard/command-line-overview.html#CollectRnaSeqMetrics -# -# #NOTE #TODO This script has not yet been tested -# -# Below, default is to work with GRCh38.p13 / Ensembl release 105 / UCSC version 39 -# Relevant files available at, for example, gencodegenes.org/human/release_39.html -# -# Dependencies: -# - samtools -# - perl -# - awk -# - Linux utilities such as gzip, grep, cut, sort -# -# -# 1. Prep work: Obtain a fasta file for the primary assembly of a given -# organism, and prepare a "chromosome sizes" file from the fasta sequence -# -# # For example... -# # Here, "${dir}" is a directory containing fasta file, gtf file, etc. -# cd "${dir}" || -# { -# echo "cd into ${dir} failed. Check on this." -# } -# -# curl https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_39/GRCh38.primary_assembly.genome.fa.gz \ -# > ./GRCh38.primary_assembly.genome.fa.gz -# -# samtools faidx ./GRCh38.primary_assembly.genome.fa.gz -# -# cut -f1,2 ./GRCh38.primary_assembly.genome.fa.fai \ -# > GRCh38.primary_assembly.genome.sizes -# -# # Make available an unzipped version of the fasta file -# gzip -dk GRCh38.primary_assembly.genome.fa.gz -# -# -# 2. Prep work: Obtain a gtf file for the primary assembly of a given organism -# -# # For example, -# cd "${dir}" || -# { -# echo "cd into ${dir} failed. Check on this." -# } -# -# curl https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_39/gencode.v39.primary_assembly.annotation.gtf.gz \ -# > gencode.v39.primary_assembly.annotation.gtf.gz -# -# gzip -dk gencode.v39.primary_assembly.annotation.gtf.gz -# - -#TODO Interactive description of arguments, etc. - -# Input files needed to make rRNA interval_list file -chrom_sizes="${1:-"GRCh38.primary_assembly.genome.sizes"}" -genes="${2:-"gencode.v39.primary_assembly.annotation.gtf"}" - -# Output file suitable for Picard CollectRnaSeqMetrics.jar. -rRNA="${3:-"gencode.v39.rRNA.interval_list"}" - -# Sequence names and lengths (must be tab-delimited) -perl -lane 'print "\@SQ\tSN:$F[0]\tLN:$F[1]\tAS:GRCh38"' "${chrom_sizes}" \ - | grep -v _ \ - >> "${rRNA}" - -# Intervals for rRNA transcripts -grep 'gene_biotype "rRNA"' "${genes}" \ - | awk '$3 == "gene"' \ - | cut -f1,4,5,7,9 \ - | perl -lane ' - /gene_id "([^"]+)"/ or die "no gene_id on $."; - print join "\t", (@F[0,1,2,3], $1) - ' \ - | sort -k1V -k2n -k3n \ - >> "${rRNA}" diff --git a/bin/parse_bam-flag.pl b/bin/parse_bam-flag.pl deleted file mode 100755 index d01ab07..0000000 --- a/bin/parse_bam-flag.pl +++ /dev/null @@ -1,58 +0,0 @@ -#!/bin/env perl - -# parse_bam-flag.pl -# Dave Tang -# 2014-0306 -# davetang.org/muse/2014/03/06/understanding-bam-flags/ -# -# Modified: Kris Alavattam -# 2023-0210 - -use strict; -use warnings; - -my $usage = "Usage: $0 \n"; -my $flag = shift or die $usage; - -die "Please enter a numerical value\n" if $flag =~ /\D+/; - -if ($flag & 0x1) { - print "template having multiple segments in sequencing, i.e., read paired (0x1)\n"; -} -if ($flag & 0x2) { - print "each segment properly aligned according to the aligner, i.e., read mapped in proper pair (0x2)\n"; -} -if ($flag & 0x4) { - print "segment unmapped, i.e., read unmapped (0x4)\n"; -} -if ($flag & 0x8) { - print "next segment in the template unmapped, i.e., mate unmapped (0x8)\n"; -} -if ($flag & 0x10) { - print "SEQ being reverse complemented, i.e., read reverse strand (0x10)\n"; -} -if ($flag & 0x20) { - print "SEQ of the next segment in the template being reversed, i.e., mate reverse strand (0x20)\n"; -} -if ($flag & 0x40) { - print "the first segment in the template, i.e., first in pair (0x40)\n"; -} -if ($flag & 0x80) { - print "the last segment in the template, i.e., second in pair (0x80)\n"; -} -if ($flag & 0x100) { - print "secondary alignment, i.e., not primary alignment (0x100)\n"; -} -if ($flag & 0x200) { - print "not passing quality controls, i.e., read fails platform/vendor quality checks (0x200)\n"; -} -if ($flag & 0x400) { - print "PCR or optical duplicate (0x400)\n"; -} -if ($flag & 0x800) { - print "supplementary alignment (0x800)\n"; -} - -exit(0); - -__END__ diff --git a/bin/process_htseq-count_outfiles.sh b/bin/process_htseq-count_outfiles.sh deleted file mode 100755 index bacc1e9..0000000 --- a/bin/process_htseq-count_outfiles.sh +++ /dev/null @@ -1,424 +0,0 @@ -#!/bin/bash - -# process_htseq-count_outfiles.sh -# KA - - -check_dependency() { - what=""" - check_dependency() - ------------------ - Check if program is available in \"\${PATH}\"; exit if not - - :param 1: program to be checked - :return: NA - """ - if [[ -z "${1}" ]]; then - printf "%s\n" "${what}" - else - command -v "${1}" &>/dev/null || - { - printf "%s\n" "Exiting: \"${1}\" not found in \"\${PATH}\"." - printf "%s\n\n" " Check your env or install \"${1}\"?" - exit 1 - } - fi -} - - -check_argument_safe_mode() { - what=""" - check_argument_safe_mode() - -------------------------- - Run script in \"safe mode\" (\`set -Eeuxo pipefail\`) if specified - - :param 1: run script in safe mode: TRUE or FALSE [default: FALSE] - :return: NA - - #TODO Check that param is not empty or inappropriate format/string - """ - case "$(convert_chr_lower "${1}")" in - true | t) \ - printf "%s\n" "-u: \"Safe mode\" is TRUE." - set -Eeuxo pipefail - ;; - false | f) \ - printf "%s\n" "\"Safe mode\" is FALSE." ;; - *) \ - printf "%s\n" "Exiting: \"Safe mode\" must be TRUE or FALSE." - exit 1 - ;; - esac -} - - -check_exists_file() { - what=""" - check_exists_file() - ------------------- - Check that a file exists; exit if it doesn't - - :param 1: file, including path - :return: NA - - #TODO Check that param is not an inappropriate format/string - """ - if [[ -z "${1}" ]]; then - printf "%s\n" "${what}" - elif [[ ! -f "${1}" ]]; then - printf "%s\n\n" "Exiting: File \"${1}\" does not exist." - exit 1 - else - : - fi -} - - -check_exists_directory() { - what=""" - check_exists_directory() - ------------------------ - Check that a directory exists; if it doesn't, then either make it or exit - - :param 1: create directory if not found: TRUE or FALSE - :param 2: directory, including path - :return: NA - - #TODO Check that params are not empty or inappropriate formats/strings - """ - case "$(convert_chr_lower "${1}")" in - true | t) \ - [[ -d "${2}" ]] || - { - printf "%s\n" "${2} doesn't exist; mkdir'ing it." - mkdir -p "${2}" - } - ;; - false | f) \ - [[ -d "${2}" ]] || - { - printf "%s\n" "Exiting: ${2} does not exist." - exit 1 - } - ;; - *) \ - printf "%s\n" "Exiting: param 1 is not \"TRUE\" or \"FALSE\"." - printf "%s\n" "${what}" - exit 1 - ;; - esac -} - - -convert_chr_lower() { - what=""" - convert_chr_lower() - ------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string (stdout) - """ - if [[ -z "${1}" ]]; then - printf "%s\n" "${what}" - else - string_in="${1}" - string_out="$(printf %s "${string_in}" | tr '[:upper:]' '[:lower:]')" - - echo "${string_out}" - fi -} - - -print_usage() { - what=""" - print_usage() - ------------- - Print the script's help message and exit - - :param 1: help message assigned to a variable within script - :return: help message (stdout) - - #TODO Checks... - """ - echo "${1}" - exit 1 -} - - -check_etc() { - # ------------------------------------ - # Check and make variable assignments - # ------------------------------------ - # Check for necessary dependencies; exit if not found - check_dependency paste - check_dependency sed - - # Evaluate "${safe_mode}" - check_argument_safe_mode "${safe_mode}" - - # Check that "${querydir}" exists - check_exists_directory FALSE "${querydir}" - - # If TRUE, then make "$(dirname ${outpath})" if it does not exist; if - #+ FALSE (i.e., "$(dirname ${outpath})" does not exist), then exit - check_exists_directory FALSE "$(dirname ${outpath})" - - # Check on the specified value for "${string}" - case "$(convert_chr_lower "${string}")" in - antisense_transcript | cut | cut_2016 | cut_4x | hc-strd-eq | \ - hc-strd-op | mrna | ncrna | nuts | rrna | snorna | snrna | srat | \ - sut | trna | xut) \ - : - ;; - *) \ - message=""" - Exiting: -s \"\${string}\" must be one of the following: - - antisense_transcript - - CUT - - CUT_2016 - - CUT_4X - - hc-strd-eq - - hc-strd-op - - mRNA - - ncRNA - - NUTs - - rRNA - - snoRNA - - snRNA - - SRAT - - SUT - - tRNA - - XUT - """ - printf "%s\n\n" "${message}" - exit 1 - ;; - esac - - # ------------------------------------ - # Assign path and name for the tempfile and outfile - # ------------------------------------ - file_t="$(dirname "${outpath}")/tmp.$(basename "${outpath}")" - file_o="${outpath}" - # echo "${file_t}" - # echo "${file_o}" - - echo "" -} - - -main() { - # ------------------------------------ - # If already present, then remove the temp- and outfile - # ------------------------------------ - if [[ -f "${file_t}" ]]; then rm "${file_t}"; fi - if [[ -f "${file_o}" ]]; then rm "${file_o}"; fi - - - # ------------------------------------ - # Collect all files (with paths) containing the selected string into an array - # ------------------------------------ - unset files - typeset -a files - while IFS=" " read -r -d $'\0'; do - files+=( "${REPLY}" ) - done < <( - find "${querydir}" \ - -maxdepth 1 \ - -type f \ - -name "*${string}*" \ - -print0 \ - | sort -zV - ) - # echo_test "${files[@]}" - # echo "${#files[@]}" - - - # ------------------------------------ - # Collect even indices into a comma-separated string; assign the string to - #+ variable 'joined' - # ------------------------------------ - unset evens - typeset -a evens - for (( i = 1; i <= $(( ${#files[@]} * 2 )); i++ )); do - if [[ $(( i % 2 )) -eq 0 ]]; then - evens+=( "${i}" ) - fi - done - # echo_test "${evens[@]}" - - printf -v joined '%s,' "${evens[@]}" - # echo "${joined%,}" - - - # ------------------------------------ - # Concatenate pertinent columns for individual htseq-count outfiles - # ------------------------------------ - paste ${files[*]} | cut -f "1,${joined%,}" > "${file_t}" - # head "${file_t}" - # tail "${file_t}" - - - # ------------------------------------ - # Strip paths from individual files, then save the filenames into a new array, - #+ col_names, which will be used to name the columns in the outfile - # ------------------------------------ - unset col_names - typeset -a col_names - col_names+=( "features" ) - for i in "${files[@]}"; do - col_names+=( "$(basename "${i}")" ) - done - # echo_test "${col_names[@]}" - - - # ------------------------------------ - # To the tempfile, add the filenames/col_names as column names - # ------------------------------------ - sed -i "1i\ - $(echo ${col_names[*]}) - " "${file_t}" - # head "${file_t}" - - - # ------------------------------------ - # Currently, the tempfile is a mix of both single and multiple whitespaces, - #+ and tabs; replace all whitespaces and tabs with a single tab; save the - #+ results to the outfile - # ------------------------------------ - cat "${file_t}" | sed 's/\t/ /g; s/[ ][ ]*/ /g; s/ /\t/g' \ - > "${file_o}" - # head "${file_o}" - # tail "${file_o}" - # echo "${file_o}" - - - # ------------------------------------ - # If the outfile is present, then remove the tempfile - # ------------------------------------ - if [[ -f "${file_o}" ]]; then rm "${file_t}"; fi -} - - -# ------------------------------------ -# Handle arguments, assign variables -# ------------------------------------ -help=""" -# ------------------------------------ -# process_htseq-count_outfiles.sh -# ------------------------------------ -Search user-specified directory for sample-specific htseq-count outfiles -containing strings for specific features in their filenames (e.g.,the feature -'mRNA', the feature 'antisense_transcript', etc.). If found, then combine all -sample-specific files for the feature into a single tabular dataframe (with -features as rows, samples as columns, and counts as cells). Order of columns -(samples) is determined by an alphanumeric sort of filenames; the script -assumes that rows in feature-specific htseq-count outfiles are ordered in the -same way (i.e., it neither checks nor changes the order of the rows). - -The following strings for features are supported: - - antisense_transcript - - CUT - - CUT_2016 - - CUT_4X - - hc-strd-eq - - hc-strd-op - - mRNA - - ncRNA - - NUTs - - rRNA - - snoRNA - - snRNA - - SRAT - - SUT - - tRNA - - XUT - -(Uppercase, lowercase, or mixed case is accepted.) - -Outfiles have the format specified with argument \${outpath}. - -Dependencies: - - Linux paste (GNU or BSD) >= version #TBD - - Linux sed (GNU or BSD) >= version #TBD - -Arguments: - -u safe_mode use safe mode: TRUE or FALSE [default: FALSE] - -q querydir directory to examine (query), including path - -o outpath outpath/directory and file; if path/directory is not - found, will exit - -s string string to query; options: antisense_transcript, CUT, - CUT_2016, CUT_4X, hc-strd-eq, hc-strd-op, mRNA, ncRNA, - NUTs, rRNA, snoRNA, snRNA, SRAT, SUT, tRNA, XUT - [default: mRNA] - - -# ------------------------------------ -# Example call and results -# ------------------------------------ -❯ bash process_htseq-count_outfiles.sh \\ - -u FALSE \\ - -q \".\" \\ - -o \"./out/htseq-count.combined.timecourse.antisense_transcript.txt\" \\ - -s \"antisense_transcript\" -# Outfile will be \"./out/htseq-count.combined.timecourse.antisense_transcript.txt\" -""" - -while getopts "u:q:o:s:" opt; do - case "${opt}" in - u) safe_mode="${OPTARG}" ;; - q) querydir="${OPTARG}" ;; - o) outpath="${OPTARG}" ;; - s) string="${OPTARG}" ;; - *) print_usage "${help}" ;; - esac -done - -[[ -z "${safe_mode}" ]] && safe_mode=FALSE -[[ -z "${querydir}" ]] && \ - { - echo "Argument -q [querydir (infile/query directory)] is empty" - echo "Printing help message and exiting..." - echo "" - print_usage "${help}" - } -[[ -z "${outpath}" ]] && \ - { - echo "Argument -o [outpath (outpath/directory and file)] is empty" - echo "Printing help message and exiting..." - echo "" - print_usage "${help}" - } -[[ -z "${string}" ]] && \ - { - string="mRNA" - echo "Argument -s [string] is empty, so it is set to its default \ - value of 'mRNA'" - } - -# #TEST (2023-0331) -# safe_mode=FALSE -# querydir="." # cd "${querydir}" -# outpath="./test.KA.2023-0331" # ., "${outdir}" -# string="hc-strd-eq" -# -# echo "${safe_mode}" -# echo "${querydir}" -# echo "${outpath}" -# echo "${string}" -# -# ls -lhaFG "${querydir}" -# ls -lhaFG "$(dirname "${outpath}")" - - -# ------------------------------------ -# Check dependencies, and check and make variable assignments -# ------------------------------------ -check_etc - - -# ------------------------------------ -# Combine feature-specific htseq-count files into tabular dataframe -# ------------------------------------ -main diff --git a/bin/read_gtf.py b/bin/read_gtf.py deleted file mode 100644 index 961f8ce..0000000 --- a/bin/read_gtf.py +++ /dev/null @@ -1,150 +0,0 @@ -#!/usr/bin/env python -""" -GTF.py -Kamil Slowikowski -2013-1224 - -Modified: Kris Alavattam -2022-0904 - -Read GFF/GTF files. Works with gzip compressed files and pandas. - http://useast.ensembl.org/info/website/upload/gff.html - -LICENSE -This is free and unencumbered software released into the public domain. Anyone -is free to copy, modify, publish, use, compile, sell, or distribute this -software, either in source code form or as a compiled binary, for any purpose, -commercial or non-commercial, and by any means. - -In jurisdictions that recognize copyright laws, the author or authors of this -software dedicate any and all copyright interest in the software to the public -domain. We make this dedication for the benefit of the public at large and to -the detriment of our heirs and successors. We intend this dedication to be an -overt act of relinquishment in perpetuity of all present and future rights to -this software under copyright law. - -THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -AUTHORS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN -ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION -WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. - -For more information, please refer to -""" - -from collections import defaultdict -import gzip -import pandas as pd -import re - -GTF_HEADER = [ - 'seqname', 'source', 'feature', 'start', 'end', 'score', 'strand', 'frame' -] -R_SEMICOLON = re.compile(r'\s*;\s*') -R_COMMA = re.compile(r'\s*,\s*') -R_KEYVALUE = re.compile(r'(\s+|\s*=\s*)') - - -def dataframe(filename): - """ - Open an optionally gzipped GTF file and return a pandas.DataFrame. - - Parameters - ---------- - filename : #TODO - #TODO - """ - # Each column is a list stored as a value in this dict. - result = defaultdict(list) - - for i, line in enumerate(lines(filename)): - for key in line.keys(): - # This key has not been seen yet, so set it to None for all - # previous lines. - if key not in result: - result[key] = [None] * i - - # Ensure this row has some value for each column. - for key in result.keys(): - result[key].append(line.get(key, None)) - - return pd.DataFrame(result) - - -def lines(filename): - """ - Open an optionally gzipped GTF file and generate a dict for each line. - - Parameters - ---------- - filename : #TODO - #TODO - """ - fn_open = gzip.open if filename.endswith('.gz') else open - - with fn_open(filename) as fh: - for line in fh: - if line.startswith('#'): - continue - else: - yield parse(line) - - -def parse(line): - """ - Parse a single GTF line and return a dict. - - Parameters - ---------- - line : #TODO - #TODO - """ - result = {} - - fields = line.rstrip().split('\t') - - for i, col in enumerate(GTF_HEADER): - result[col] = _get_value(fields[i]) - - # INFO field consists of "key1=value;key2=value;...". - infos = [x for x in re.split(R_SEMICOLON, fields[8]) if x.strip()] - - for i, info in enumerate(infos, 1): - # It should be key="value". - try: - key, _, value = re.split(R_KEYVALUE, info, 1) - # But sometimes it is just "value". - except ValueError: - key = 'INFO{}'.format(i) - value = info - # Ignore the field if there is no value. - if value: - result[key] = _get_value(value) - - return result - - -def _get_value(value): - """ - #TODO Description of function. - - Parameters - ---------- - value : #TODO - #TODO - """ - if not value: - return None - - # Strip double and single quotes. - value = value.strip('"\'') - - # Return a list if the value has a comma. - if ',' in value: - value = re.split(R_COMMA, value) - # These values are equivalent to None. - elif value in ['', '.', 'NA']: - return None - - return value diff --git a/bin/scrap_functions.sh b/bin/scrap_functions.sh deleted file mode 100644 index 76e8da6..0000000 --- a/bin/scrap_functions.sh +++ /dev/null @@ -1,153 +0,0 @@ -#!/bin/bash - -# functions.sh -# KA - - -check_exit() { - what=""" - check_exit() - ------------ - Check the exit code of a child process - - #TODO Check that params are not empty or inappropriate formats or strings - - :param 1: exit code = 0> - :param 2: program/package - :return: message - """ - if [[ "${1}" == "0" ]]; then - echo "${2} completed: $(date)" - else - err "Error: ${2} returned exit code ${1}" - fi -} - - -err() { - what=""" - err() - ----- - Print an error meassage, then exit with code 1 - - #TODO Check that param is not empty or inappropriate format or string - - :param 1: program/package - :return: error message (stdout) - """ - echo "${1} exited unexpectedly" - # exit 1 -} - - -check_arguments_mode() { - what=""" - check_arguments_mode() - ---------------------- - Calculate run time for chunk of code - - :param 1: start time in \$(date +%s) format - :param 2: end time in \$(date +%s) format - :param 3: message to be displayed when printing the run time - :return: message - """ - case "$(convert_chr_lower "${mode_1}")" in - true | t | 1) \ - case "$(convert_chr_lower "${mode_2}")" in - true | t | 1) \ - echo "Exiting: Both modes 1 and 2 are TRUE." - echo " Only one of the modes can be TRUE." - exit 1 - ;; - false | f | 0) \ - case "$(convert_chr_lower "${mode_3}")" in - true | t | 1) \ - echo "Exiting: Both modes 1 and 3 are TRUE." - echo " Only one of the modes can be TRUE." - exit 1 - ;; - false | f | 0) \ - echo "Running 'mode_1'" - mode=1 - ;; - *) \ - printf "%s\n" "Exiting: Mode 3 is neither T nor F." - exit 1 - esac - ;; - *) \ - printf "%s\n" "Exiting: 'mode_2' is neither T nor F." - exit 1 - ;; - esac - ;; - false | f | 0) \ - case "$(convert_chr_lower "${mode_2}")" in - true | t | 1) \ - case "$(convert_chr_lower "${mode_3}")" in - true | t | 1) \ - echo "Exiting: Both modes 2 and 3 are TRUE." - echo " Only one of the modes can be TRUE." - exit 1 - ;; - false | f | 0) \ - echo "Running 'mode_2'" - mode=2 - ;; - *) \ - printf "%s\n" "Exiting: Mode 2 is neither T nor F." - exit 1 - esac - ;; - false | f | 0) \ - case "$(convert_chr_lower "${mode_3}")" in - true | t | 1) \ - echo "Running 'mode_3'" - mode=3 - ;; - false | f | 0) \ - echo "Exiting: Modes 1, 2, and 3 are all FALSE." - echo " One of the modes must be TRUE." - exit 1 - ;; - *) \ - printf "%s\n" "Exiting: Mode 3 is neither T nor F." - exit 1 - esac - ;; - *) \ - printf "%s\n" "Exiting: Mode 1 is neither T nor F." - exit 1 - ;; - esac - ;; - *) \ - printf "%s\n" "Exiting: Mode 1 is neither T nor F." - exit 1 - ;; - esac -} - - -check_argument_mode() { - #TODO Description (what), checks, etc. - case "$(convert_chr_lower "${1}")" in - 1) \ - mode=1 - printf "%s\n" "\"Run in '{in,ex}clusion' mode\" is set to '1'." - ;; - 2) \ - mode=2 - printf "%s\n" "\"Run in '{in,ex}clusion' mode\" is set to '2'." - ;; - 3) \ - mode=3 - printf "%s\n" "\"Run in '{in,ex}clusion' mode\" is set to '3'." - ;; - *) \ - printf "%s\n\n" "Exiting: \"{in,ex}clusion mode\" argument must be 1, 2, or 3.\n" - # exit 1 - ;; - esac -} - diff --git a/bin/separate_bam.sh b/bin/separate_bam.sh deleted file mode 100644 index e8a1b7e..0000000 --- a/bin/separate_bam.sh +++ /dev/null @@ -1,668 +0,0 @@ -#!/bin/bash - -# separate_split_bam.sh -# KA - - -check_dependency() { - what=""" - check_dependency() - ------------------ - Check if program is available in \"\${PATH}\"; exit if not - - :param 1: program to be checked - :return: NA - """ - if [[ -z "${1}" ]]; then - printf "%s\n" "${what}" - else - command -v "${1}" &>/dev/null || - { - printf "%s\n" "Exiting: \"${1}\" not found in \"\${PATH}\"." - printf "%s\n\n" " Check your env or install \"${1}\"?" - # exit 1 - } - fi -} - - -check_argument_safe_mode() { - what=""" - check_argument_safe_mode() - -------------------------- - Run script in \"safe mode\" (\`set -Eeuxo pipefail\`) if specified - - #TODO Check that param is not empty or inappropriate format/string - - :param 1: run script in safe mode: TRUE or FALSE [default: FALSE] - :return: NA - """ - case "$(convert_chr_lower "${1}")" in - true | t | 1) \ - printf "%s\n" "-u: \"Safe mode\" is TRUE." - set -Eeuxo pipefail - ;; - false | f | 0) \ - printf "%s\n" "\"Safe mode\" is FALSE." ;; - *) \ - printf "%s\n" "Exiting: \"Safe mode\" must be TRUE or FALSE." - # exit 1 - ;; - esac -} - - -check_exists_file() { - what=""" - check_exists_file() - ------------------- - Check that a file exists; exit if it doesn't - - #TODO Check that param is not an inappropriate format/string - - :param 1: file, including path - :return: NA - """ - if [[ -z "${1}" ]]; then - printf "%s\n" "${what}" - elif [[ ! -f "${1}" ]]; then - printf "%s\n\n" "Exiting: File \"${1}\" does not exist." - # exit 1 - else - : - fi -} - - -check_exists_directory() { - what=""" - check_exists_directory() - ------------------------ - Check that a directory exists; if it doesn't, then either make it or exit - - #TODO Check that params are not empty or inappropriate formats/strings - - :param 1: create directory if not found: TRUE or FALSE - :param 2: directory, including path - :return: NA - """ - case "$(convert_chr_lower "${1}")" in - true | t | 1) \ - [[ -d "${2}" ]] || - { - printf "%s\n" "${2} doesn't exist; mkdir'ing it." - mkdir -p "${2}" - } - ;; - false | f | 0) \ - [[ -d "${2}" ]] || - { - printf "%s\n" "Exiting: ${2} does not exist." - exit 1 - } - ;; - *) \ - printf "%s\n" "Exiting: param 1 is not TRUE or FALSE." - printf "%s\n" "${what}" - exit 1 - ;; - esac -} - - -check_argument_primary() { - #TODO Description (what), checks, etc. - case "$(convert_chr_lower "${1}")" in - true | t | 1) \ - primary=1 - printf "%s\n" "\"Output bam composed of 'proper' primary alignments\" is TRUE." - ;; - false | f | 0) \ - primary=0 - printf "%s\n" "\"Output bam composed of 'proper' primary alignments\" is FALSE." - ;; - *) \ - printf "%s\n\n" "Exiting: \"primary\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; - esac -} - - -check_argument_secondary() { - #TODO Description (what), checks, etc. - case "$(convert_chr_lower "${1}")" in - true | t | 1) \ - secondary=1 - printf "%s\n" "\"Output bam composed of 'proper' secondary primary alignments\" is TRUE." - ;; - false | f | 0) \ - secondary=0 - printf "%s\n" "\"Output bam composed of 'proper' secondary primary alignments\" is FALSE." - ;; - *) \ - printf "%s\n\n" "Exiting: \"secondary\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; - esac -} - - -check_argument_prim_sec() { - #TODO Description (what), checks, etc. - case "$(convert_chr_lower "${1}")" in - true | t | 1) \ - prim_sec=1 - printf "%s\n" "\"Output bam composed of 'proper' primary and secondary alignments\" is TRUE." - ;; - false | f | 0) \ - prim_sec=0 - printf "%s\n" "\"Output bam composed of 'proper' primary and secondary alignments\" is FALSE." - ;; - *) \ - printf "%s\n\n" "Exiting: \"prim_sec\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; - esac -} - - -check_argument_unmapped() { - #TODO Description (what), checks, etc. - case "$(convert_chr_lower "${1}")" in - true | t | 1) \ - unmapped=1 - printf "%s\n" "\"Output bam composed of 'proper' unmapped reads\" is TRUE." - ;; - false | f | 0) \ - unmapped=0 - printf "%s\n" "\"Output bam composed of 'proper' unmapped reads\" is FALSE." - ;; - *) \ - printf "%s\n\n" "Exiting: \"unmapped\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; - esac -} - - -check_argument_proper_etc() { - #TODO Description (what), checks, etc. - case "$(convert_chr_lower "${1}")" in - true | t | 1) \ - proper_etc=1 - printf "%s\n" "\"Output bam composed of 'proper' primary alignments and singletons, and 'proper' unmapped reads\" is TRUE." - ;; - false | f | 0) \ - proper_etc=0 - printf "%s\n" "\"Output bam composed of 'proper' primary alignments and singletons, and 'proper' unmapped reads\" is FALSE." - ;; - *) \ - printf "%s\n\n" "Exiting: \"proper_etc\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; - esac -} - - -check_argument_improp_etc() { - #TODO Description (what), checks, etc. - case "$(convert_chr_lower "${1}")" in - true | t | 1) \ - improp_etc=1 - printf "%s\n" "\"Output bam composed of 'proper' and 'improper' primary and secondary alignments, and unmapped reads\" is TRUE." - ;; - false | f | 0) \ - improp_etc=0 - printf "%s\n" "\"Output bam composed of 'proper' and 'improper' primary and secondary alignments, and unmapped reads\" is FALSE." - ;; - *) \ - printf "%s\n\n" "Exiting: \"improp_etc\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; - esac -} - - -check_argument_flagstat() { - #TODO Description (what), checks, etc. - case "$(convert_chr_lower "${1}")" in - true | t | 1) \ - flagstat=1 - printf "%s\n" "\"Run samtools flagstat\" is TRUE." - ;; - false | f | 0) \ - flagstat=0 - printf "%s\n" "\"Run samtools flagstat\" is FALSE." - ;; - *) \ - printf "%s\n\n" "Exiting: \"flagstat\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; - esac -} - - -calculate_run_time() { - what=""" - calculate_run_time() - -------------------- - Calculate run time for chunk of code - - #TODO Check that params are not empty or inappropriate formats or strings - - :param 1: start time in \$(date +%s) format - :param 2: end time in \$(date +%s) format - :param 3: message to be displayed when printing the run time - :return: message - """ - local run_time - - run_time="$(echo "${2}" - "${1}" | bc -l)" - - echo "" - echo "${3}" - printf 'Run time: %dh:%dm:%ds\n' \ - $(( run_time/3600 )) \ - $(( run_time%3600/60 )) \ - $(( run_time%60 )) - echo "" -} - - -display_spinning_icon() { - what=""" - display_spinning_icon() - ----------------------- - Display \"spinning icon\" while a background process runs - - #TODO Checks... - - :param 1: PID of the last program the shell ran in the background - :param 2: message to be displayed next to the spinning icon - :return: spinning icon - """ - local spin - local i - - spin="/|\\–" - i=0 - - while kill -0 "${1}" 2> /dev/null; do - i=$(( (i + 1) % 4 )) - printf "\r${spin:$i:1} %s" "${2}" - sleep .15 - done -} - - -list_tally_flags() { - what=""" - list_tally_flags() - ------------------ - List and tally flags in a bam infile; function acts on a bam infile to - perform piped commands (samtools view, cut, sort, uniq -c, sort -nr) that - list and tally flags; function writes the results to a txt outfile, the - name of which is derived from the txt infile - - #TODO Checks... - - :param 1: name of bam infile, including path - :param 2: name of txt outfile, including path - :return: file \"\${2}\" - """ - local start - local end - - start="$(date +%s)" - - samtools view "${1}" \ - | cut -d$'\t' -f 2 \ - | sort \ - | uniq -c \ - | sort -nr \ - > "${2}" & - display_spinning_icon $! \ - "Running piped commands (samtools view, cut, sort, uniq -c, sort -nr) on $(basename "${1}")... " - - end="$(date +%s)" - echo "" - calculate_run_time "${start}" "${end}" \ - "List and tally flags in $(basename "${1}")." -} - - -check_argument_list_tally() { - #TODO Description (what), checks, etc. - case "$(convert_chr_lower "${1}")" in - true | t | 1) \ - list_tally=1 - printf "%s\n" "\"Run list_tally_flags()\" is TRUE." - ;; - false | f | 0) \ - list_tally=0 - printf "%s\n" "\"Run list_tally_flags()\" is FALSE." - ;; - *) \ - printf "%s\n\n" "Exiting: \"list_tally\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; - esac -} - - -check_argument_threads() { - what=""" - check_argument_threads() - --------------- - Check the value assigned to variable for threads/cores in script - - :param 1: value assigned to variable for threads/cores = 1> - :return: NA - - #TODO Checks... - """ - case "${1}" in - '' | *[!0-9]*) \ - printf "%s\n" "Exiting: argument must be an integer >= 1." - # exit 1 - ;; - *) : ;; - esac -} - - -convert_chr_lower() { - what=""" - convert_chr_lower() - ------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string (stdout) - """ - if [[ -z "${1}" ]]; then - printf "%s\n" "${what}" - else - string_in="${1}" - string_out="$(printf %s "${string_in}" | tr '[:upper:]' '[:lower:]')" - - echo "${string_out}" - fi -} - - -print_usage() { - what=""" - print_usage() - ------------- - Print the script's help message and exit - - #TODO Checks... - - :param 1: help message assigned to a variable within script - :return: help message (stdout) - """ - echo "${1}" - exit 1 -} - - -check_etc() { - what=""" - check_etc() - ----------- - Check dependencies, and check and make variable assignments - - #TODO Checks, etc., and a means to print the contents of variable what - - :global safe_mode: - :global infile: - :global outdir: - :global primary: - :global secondary: - :global prim_sec: - :global unmapped: - :global proper_etc: - :global improp_etc: - :global threads: - :global flagstat: - :return global base: - :return global outfile: - """ - # Check for necessary dependencies; exit if not found - check_dependency samtools - - # Evaluate "${safe_mode}" - check_argument_safe_mode "${safe_mode}" - - # Check that "${infile}" exists - check_exists_file "${infile}" - - # If TRUE, then make "${outdir}" if it does not exist; if FALSE (i.e., - #+ "${outdir}" does not exist), then exit - check_exists_directory TRUE "${outdir}" - - check_argument_primary "${primary}" - - check_argument_secondary "${secondary}" - - check_argument_prim_sec "${prim_sec}" - - check_argument_unmapped "${unmapped}" - - check_argument_proper_etc "${proper_etc}" - - check_argument_improp_etc "${improp_etc}" - - # Check on value assigned to "${flagstat}" - check_argument_flagstat "${flagstat}" - - #TODO - check_argument_list_tally "${list_tally}" - - # Check on value assigned to "${threads}" - check_argument_threads "${threads}" - - #TODO Not sure if I want these assignments in this function... - # Make additional variable assignments from the arguments - outfile="$(basename "${infile}")" - - echo "" -} - - -main() { - what=""" - main() - ------ - Run samtools view to exclude unmapped reads from bam infile; optionally, - run samtools flagstat on primary alignment-filtered bam outfile - - #TODO Checks, etc., and a means to print the contents of variable what - - :global threads: number of threads = 1> - :global infile: bam infile, including path - :global outdir: outfile directory, including path - :global outfile: bam outfile - :global primary: output bam composed of 'proper' primary alignments - :global secondary: output bam composed of 'proper' secondary alignments - :global prim_sec: output bam composed of 'proper' primary and secondary alignments - :global unmapped: output bam composed of 'proper' unmapped reads - :global proper_etc: output bam composed of 'proper' primary alignments and singletons, and 'proper' unmapped reads - :global improp_etc: output bam composed of 'proper' and 'improper' primary and secondary alignments, and unmapped reads - :global flagstat: run samtools flagstat on bams <0 or 1> - :global list_tally: run samtools flagstat on bams <0 or 1> - :return: file(s) outdir/outfile (samtools view) - :return: file(s) outdir/outfile (samtools flagstat) - :return: file(s) outdir/outfile (list_tally_flags) - """ - echo "" - echo "Running ${0}... " - echo "Filtering out unmapped reads..." - - # Bam composed of "proper" primary alignments - if [[ "${primary}" -eq 1 ]]; then - samtools view \ - -@ "${threads}" \ - -F 0x0100 \ - -F 0x0004 \ - -F 0x0008 \ - -b -o "${outdir}/${outfile%.bam}.primary.bam" \ - "${infile}" - fi - - # Bam composed of "proper" secondary alignments - if [[ "${secondary}" -eq 1 ]]; then - samtools view \ - -@ "${threads}" \ - --rf 0x0100 \ - -F 0x0004 \ - -F 0x0008 \ - -b -o "${outdir}/${outfile%.bam}.secondary.bam" \ - "${infile}" - fi - - # Bam composed of "proper" primary and secondary alignments - if [[ "${prim_sec}" -eq 1 ]]; then - samtools view \ - -@ "${threads}" \ - -F 0x0004 \ - -F 0x0008 \ - -b -o "${outdir}/${outfile%.bam}.primary-secondary.bam" \ - "${infile}" - fi - - # Bam composed of "proper" unmapped reads - if [[ "${unmapped}" -eq 1 ]]; then - samtools view \ - -@ "${threads}" \ - --rf 0x0004 \ - --rf 0x0008 \ - -F 0x0100 \ - -b -o "${outdir}/${outfile%.bam}.unmapped.bam" \ - "${infile}" - fi - - # Bam composed of "proper" primary alignments and singletons, and "proper" - #+ unmapped reads - if [[ "${proper_etc}" -eq 1 ]]; then - samtools view \ - -@ "${threads}" \ - -F 0x0100 \ - -b -o "${outdir}/${outfile%.bam}.proper-etc.bam" \ - "${infile}" - fi - - # Bam composed of "proper" and "improper" primary and secondary - #+ alignments, and unmapped reads - if [[ "${improp_etc}" -eq 1 ]]; then - samtools view \ - -@ "${threads}" \ - --rf 0x0100 \ - --rf 0x0004 \ - --rf 0x0008 \ - -b -o "${outdir}/${outfile%.bam}.proper-improper-etc.bam" \ - "${infile}" - fi - - if [[ $((flagstat)) -eq 1 ]]; then - for i in "${outdir}/${outfile%.bam}."*".bam"; do - samtools flagstat \ - -@ "${threads}" \ - "${i}" \ - > "${i%.bam}.flagstat.txt" - done - fi - - if [[ $((list_tally)) -eq 1 ]]; then - #TODO Switch to GNU parallel here - for i in "${outdir}/${outfile%.bam}."*".bam"; do - list_tally_flags \ - "${i}" \ - "${i%.bam}.list-tally-flags.txt" - done - fi -} - - -# ------------------------------------ -# Handle arguments -# ------------------------------------ -help=""" -# ------------------------------------ -# separate_bams.sh -# ------------------------------------ -Filter out unmapped reads from a bam infile. Optionally, run samtools flagstat -on the filtered bam outfile. Name(s) of outfile(s) are derived from the infile. - -Dependencies: - - samtools >= version #TBD - -Arguments: - -u safe_mode use safe mode: TRUE or FALSE [default: FALSE] - -i infile bam infile, including path - -o outdir outfile directory, including path; if not found, will be - mkdir'd - -1 primary output bam composed of 'proper' primary alignments - [default: TRUE] - -2 secondary output bam composed of 'proper' secondary alignments - [default: TRUE] - -3 prim_sec output bam composed of 'proper' primary and secondary - alignments [default: TRUE] - -4 unmapped output bam composed of 'proper' unmapped reads - [default: TRUE] - -5 proper_etc output bam composed of 'proper' primary alignments and - singletons, and 'proper' unmapped reads - [default: FALSE] - -6 improp_etc output bam composed of 'proper' and 'improper' primary - and secondary alignments, and unmapped reads - [default: FALSE] - -f flagstat run samtools flagstat on bam outfiles [default: TRUE] - -l list_tally run list and tally flags in bam outfiles - [default: TRUE] - -t threads number of threads = 1> [default: 1] -""" - -while getopts "u:i:o:1:2:3:4:5:6:f:l:t:" opt; do - case "${opt}" in - u) safe_mode="${OPTARG}" ;; - i) infile="${OPTARG}" ;; - o) outdir="${OPTARG}" ;; - 1) primary="${OPTARG}" ;; - 2) secondary="${OPTARG}" ;; - 3) prim_sec="${OPTARG}" ;; - 4) unmapped="${OPTARG}" ;; - 5) proper_etc="${OPTARG}" ;; - 6) improp_etc="${OPTARG}" ;; - f) flagstat="${OPTARG}" ;; - l) list_tally="${OPTARG}" ;; - t) threads="${OPTARG}" ;; - *) print_usage ;; - esac -done - -[[ -z "${safe_mode}" ]] && safe_mode=FALSE -[[ -z "${infile}" ]] && print_usage "${help}" -[[ -z "${outdir}" ]] && print_usage "${help}" -[[ -z "${primary}" ]] && primary=TRUE -[[ -z "${secondary}" ]] && secondary=TRUE -[[ -z "${prim_sec}" ]] && prim_sec=TRUE -[[ -z "${unmapped}" ]] && unmapped=TRUE -[[ -z "${proper_etc}" ]] && proper_etc=FALSE -[[ -z "${improp_etc}" ]] && improp_etc=FALSE -[[ -z "${flagstat}" ]] && flagstat=TRUE -[[ -z "${list_tally}" ]] && list_tally=TRUE -[[ -z "${threads}" ]] && threads=1 - - -# ------------------------------------ -# Check dependencies, and check and make variable assignments -# ------------------------------------ -check_etc - - -# ------------------------------------ -# Run samtools to... -# ------------------------------------ -main diff --git a/bin/split_bam_fwd-rev.sh b/bin/split_bam_fwd-rev.sh deleted file mode 100644 index 34168cf..0000000 --- a/bin/split_bam_fwd-rev.sh +++ /dev/null @@ -1,258 +0,0 @@ -#!/bin/bash - -# split_bam_fwd_rev.sh -# CC and AG? -# Adapted by KA, 2022-1027 - - -# Source functions ----------------------------------------------------------- -check_dependency() { - # Check if program is available in "${PATH}"; exit if not - # - # :param 1: program/package - command -v "${1}" &>/dev/null || - { - echo "Exiting: ${1} not found. Install ${1}." - # exit 1 - } -} - - -check_exit() { - # Check the exit code of a child process - # - # :param 1: exit code = 0> - # :param 2: program/package - if [[ "${1}" == "0" ]]; then - echo "${2} completed: $(date)" - else - err "#ERROR: ${2} returned exit code ${1}" - fi -} - - -err() { - # Print an error meassage, then exit with code 1 - # - # :param 1: program/package - echo "${1} exited unexpectedly" - # exit 1 -} - - -print_usage() { - # Print the help message and exit - echo "${help}" - # exit 1 -} - - -# Handle arguments, assign variables ----------------------------------------- -help=""" -Take user-input .bam files and split them into distinct .bam files for the -forward and reverse strands, saving the split .bam files to a user-defined out -directory. - -Dependencies: - - samtools >= 1.9 - -Arguments: - -h print this help message and exit - -u use safe mode: \"TRUE\" or \"FALSE\" - -i infile, including path - -o outfile directory, including path; if not found, will be mkdir'd - -t number of threads = 1> - -c remove bams for flags 147, 99, 83, and 163: \"TRUE\" or \"FALSE\" -""" - -while getopts "h:u:i:o:t:c:" opt; do - case "${opt}" in - h) echo "${help}" && exit ;; - u) safe_mode="${OPTARG}" ;; - i) infile="${OPTARG}" ;; - o) outdir="${OPTARG}" ;; - t) threads="${OPTARG}" ;; - c) clean_up="${OPTARG}" ;; - *) print_usage ;; - esac -done - -[[ -z "${safe_mode}" ]] && safe_mode=FALSE -[[ -z "${infile}" ]] && print_usage -[[ -z "${outdir}" ]] && print_usage -[[ -z "${threads}" ]] && threads=16 -[[ -z "${clean_up}" ]] && clean_up=TRUE - -# Assignments for tests -# safe_mode=FALSE -# infile="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1025/align_process_fastqs/bam/5781_G1_IN_merged.bam" -# outdir="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1025/align_process_fastqs/bam" -# threads=1 -# clean_up=TRUE -# -# echo "${safe_mode}" -# echo "${infile}" -# echo "${outdir}" -# echo "${threads}" -# echo "${clean_up}" -# -# ls -lhaFG "${infile}" -# ls -lhaFG "${outdir}" - - -# Check variable assignments and dependencies -------------------------------- -echo "" -echo "Running ${0}... " - -# Evaluate "${safe_mode}" -case "$(echo "${safe_mode}" | tr '[:upper:]' '[:lower:]')" in - true | t) \ - echo -e "-u: \"Safe mode\" is TRUE.\n" && set -Eeuxo pipefail ;; - false | f) \ - echo -e "-u: \"Safe mode\" is FALSE.\n" ;; - *) \ - echo -e "Exiting: -u \"safe mode\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; -esac - -# Check that "${infile}" exists -[[ -f "${infile}" ]] || - { - echo -e "Exiting: -i ${infile} does not exist.\n" - # exit 1 - } - -# Make "${outdir}" if it doesn't exist -[[ -d "${outdir}" ]] || - { - echo -e "-o: Directory ${outdir} does not exist; making the directory.\n" - mkdir -p "${outdir}" - } - -# Evaluate "${clean_up}" -case "$(echo "${clean_up}" | tr '[:upper:]' '[:lower:]')" in - true | t) \ - echo -e "-c: \"Clean up\" is TRUE.\n" ;; - false | f) \ - echo -e "-c: \"Clean up\" is FALSE.\n" ;; - *) \ - echo -e "Exiting: -c \"clean up\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; -esac - -echo "" - -# Check for necessary dependencies; exit if not found -module="SAMtools/1.16.1-GCC-11.2.0" -ml "${module}" -check_dependency samtools - - -# Make additional variable assignments from the arguments -------------------- -base="$(basename "${infile}")" -name="${base%.*}" -forward_1="${outdir}/${name}.fwd_99.bam" -forward_2="${outdir}/${name}.fwd_147.bam" -forward="${outdir}/${name}.fwd.bam" -reverse_1="${outdir}/${name}.rev_83.bam" -reverse_2="${outdir}/${name}.rev_163.bam" -reverse="${outdir}/${name}.rev.bam" - -# Test -# echo "${base}" -# echo "${name}" -# echo "${forward_1}" -# echo "${forward_2}" -# echo "${forward}" -# echo "${reverse_1}" -# echo "${reverse_2}" -# echo "${reverse}" - - -# Forward strand --------------------- -#+ -#+ 1. Alignments of the second in pair if they map to the forward strand -#+ 2. Alignments of the first in pair if they map to the reverse strand - -# 0x1 - paired -#+ 0x2 - properly paired -#+ 0x20 - partner on reverse strand -#+ 0x40 - read one -#+ FLAGs 0x1 + 0x2 + 0x20 + 0x40 = 0x63 = 99 in decimal -samtools view -@ "${threads}" -bh -f 99 "${infile}" -o "${forward_1}" -check_exit $? "samtools" - -samtools index -@ "${threads}" "${forward_1}" -check_exit $? "samtools" - -# 0x1 - paired -#+ 0x2 - properly paired -#+ 0x10 - on reverse strand -#+ 0x80 - read two -#+ FLAGs 0x1 + 0x2 + 0x10 + 0x80 = 0x93 = 147 in decimal -samtools view -@ "${threads}" -bh -f 147 "${infile}" -o "${forward_2}" -check_exit $? "samtools" - -samtools index -@ "${threads}" "${forward_2}" -check_exit $? "samtools" - -# Combine alignments that originate on the forward strand -samtools merge -@ "${threads}" -f "${forward_1}" "${forward_2}" -o "${forward}" -check_exit $? "samtools" - -samtools index -@ "${threads}" "${forward}" -check_exit $? "samtools" - - -# Reverse strand --------------------- -#+ -#+ 1. Alignments of the second in pair if they map to the reverse strand -#+ 2. Alignments of the first in pair if they map to the forward strand - -# 0x1 - paired -#+ 0x2 - properly paired -#+ 0x10 - reverse strand -#+ 0x40 - read one -#+ FLAGs 0x1 + 0x2 + 0x10 + 0x40 = 0x53 = 83 in decimal -samtools view -@ "${threads}" -bh -f 83 "${infile}" -o "${reverse_1}" -check_exit $? "samtools" - -samtools index -@ "${threads}" "${reverse_1}" -check_exit $? "samtools" - -# 0x1 - paired -#+ 0x2 - properly paired -#+ 0x30 - partner on reverse strand -#+ 0x80 - read two -#+ FLAGs 0x1 + 0x2 + 0x20 + 0x80 = 0xA3 = 163 in decimal -samtools view -@ "${threads}" -bh -f 163 "${infile}" -o "${reverse_2}" -check_exit $? "samtools" - -samtools index -@ "${threads}" "${reverse_2}" -check_exit $? "samtools" - -# Combine alignments that originate on the reverse strand -samtools merge -@ "${threads}" -f "${reverse_1}" "${reverse_2}" -o "${reverse}" -check_exit $? "samtools" - -samtools index "${reverse}" -check_exit $? "samtools" - - -# Clean up ------------------------------------------------------------------- -if \ - [[ "$(echo "${clean_up}" | tr '[:upper:]' '[:lower:]')" == "true" ]] || \ - [[ "$(echo "${clean_up}" | tr '[:upper:]' '[:lower:]')" == "t" ]]; then - rm \ - "${forward_1}" \ - "${forward_2}" \ - "${reverse_1}" \ - "${reverse_2}" - rm \ - "${forward_1}.bai" \ - "${forward_2}.bai" \ - "${reverse_1}.bai" \ - "${reverse_2}.bai" -fi diff --git a/bin/split_bam_species.sh b/bin/split_bam_species.sh deleted file mode 100644 index 21f9a5b..0000000 --- a/bin/split_bam_species.sh +++ /dev/null @@ -1,402 +0,0 @@ -#!/bin/bash - -# split_bam_by_species.sh -# KA - - -check_dependency() { - what=""" - check_dependency() - ------------------ - Check if program is available in \"\${PATH}\"; exit if not - - :param 1: program to be checked - :return: NA - """ - if [[ -z "${1}" ]]; then - printf "%s\n" "${what}" - else - command -v "${1}" &>/dev/null || - { - printf "%s\n" "Exiting: \"${1}\" not found in \"\${PATH}\"." - printf "%s\n\n" " Check your env or install \"${1}\"?" - # exit 1 - } - fi -} - - -check_argument_safe_mode() { - what=""" - check_argument_safe_mode() - -------------------------- - Run script in \"safe mode\" (\`set -Eeuxo pipefail\`) if specified - - :param 1: run script in safe mode: TRUE or FALSE [default: FALSE] - :return: NA - - #TODO Check that param is not empty or inappropriate format/string - """ - case "$(convert_chr_lower "${1}")" in - true | t) \ - printf "%s\n" "-u: \"Safe mode\" is TRUE." - set -Eeuxo pipefail - ;; - false | f) \ - printf "%s\n" "\"Safe mode\" is FALSE." ;; - *) \ - printf "%s\n" "Exiting: \"Safe mode\" must be TRUE or FALSE." - # exit 1 - ;; - esac -} - - -check_exists_file() { - what=""" - check_exists_file() - ------------------- - Check that a file exists; exit if it doesn't - - :param 1: file, including path - :return: NA - - #TODO Check that param is not an inappropriate format/string - """ - if [[ -z "${1}" ]]; then - printf "%s\n" "${what}" - elif [[ ! -f "${1}" ]]; then - printf "%s\n\n" "Exiting: File \"${1}\" does not exist." - # exit 1 - else - : - fi -} - - -check_exists_directory() { - what=""" - check_exists_directory() - ------------------------ - Check that a directory exists; if it doesn't, then either make it or exit - - :param 1: create directory if not found: TRUE or FALSE - :param 2: directory, including path - :return: NA - - #TODO Check that params are not empty or inappropriate formats/strings - """ - case "$(convert_chr_lower "${1}")" in - true | t) \ - [[ -d "${2}" ]] || - { - printf "%s\n" "${2} doesn't exist; mkdir'ing it." - mkdir -p "${2}" - } - ;; - false | f) \ - [[ -d "${2}" ]] || - { - printf "%s\n" "Exiting: ${2} does not exist." - exit 1 - } - ;; - *) \ - printf "%s\n" "Exiting: param 1 is not \"TRUE\" or \"FALSE\"." - printf "%s\n" "${what}" - exit 1 - ;; - esac -} - - -check_argument_threads() { - what=""" - check_argument_threads() - --------------- - Check the value assigned to variable for threads/cores in script - - :param 1: value assigned to variable for threads/cores = 1> - :return: NA - - #TODO Checks... - """ - case "${1}" in - '' | *[!0-9]*) \ - printf "%s\n" "Exiting: argument must be an integer >= 1." - # exit 1 - ;; - *) : ;; - esac -} - - -split_with_samtools() { - what=""" - split_with_samtools() - --------------------- - Use samtools to filter a bam file such that it contains only chromosome(s) - specified with ${0} argument -s - - :param 1: threads = 1> - :param 2: bam infile, including path - :param 3: chromosomes to retain - :param 4: bam outfile, including path - :return: param 2 filtered to include only param 3 in param 4 - - #TODO Checks... - """ - samtools view -@ "${1}" -h "${2}" ${3} -o "${4}" -} - - -convert_chr_lower() { - what=""" - convert_chr_lower() - ------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string (stdout) - """ - if [[ -z "${1}" ]]; then - printf "%s\n" "${what}" - else - string_in="${1}" - string_out="$(printf %s "${string_in}" | tr '[:upper:]' '[:lower:]')" - - echo "${string_out}" - fi -} - - -print_usage() { - what=""" - print_usage() - ------------- - Print the script's help message and exit - - :param 1: help message assigned to a variable within script - :return: help message (stdout) - - #TODO Checks... - """ - echo "${1}" - exit 1 -} - - -check_etc() { - # ------------------------------------ - # Check and make variable assignments - # ------------------------------------ - # Check for necessary dependencies; exit if not found - check_dependency samtools - - # Evaluate "${safe_mode}" - check_argument_safe_mode "${safe_mode}" - - # Check that "${infile}" exists - check_exists_file "${infile}" - - # If TRUE exist, then make "${outdir}" if it does not exist; if FALSE, - #+ then exit if "${outdir}" does not exist - check_exists_directory FALSE "${outdir}" - - # Check on the specified value for "${split}" - case "$(echo "${split}" | tr '[:upper:]' '[:lower:]')" in - sc_all | sc_no_mito | sc_vii | sc_xii | sc_vii_xii | sc_mito | \ - sc_kl_all | kl_all | virus_20s) \ - : - ;; - *) \ - message=""" - Exiting: -s \"\${split}\" must be one of the following: - - SC_all - - SC_no_Mito - - SC_VII - - SC_XII - - SC_VII_XII - - SC_Mito - - SC_KL_all - - KL_all - - virus_20S - """ - printf "%s\n\n" "${message}" - exit 1 - ;; - esac - - # Check on value assigned to "${threads}" - check_argument_threads "${threads}" - - #TODO Not sure if I want this assignment in this function... - # Make additional variable assignments from the arguments - outfile="$(basename "${infile}")" - - echo "" -} - - -main() { - # ------------------------------------ - # Run samtools to split the bam by species/chromosome - # ------------------------------------ - - echo "" - echo "Running ${0}... " - - # #TEST - # threads=1 - # infile="exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" - # chr="VII XII" - # SC_all="exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.split_SC_VII_XII.bam" - - if [[ "$(convert_chr_lower "${split}")" == "sc_all" ]]; then - chr="I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" - elif [[ "$(convert_chr_lower "${split}")" == "sc_no_mito" ]]; then - chr="I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI" - elif [[ "$(convert_chr_lower "${split}")" == "sc_vii" ]]; then - chr="VII" - elif [[ "$(convert_chr_lower "${split}")" == "sc_xii" ]]; then - chr="XII" - elif [[ "$(convert_chr_lower "${split}")" == "sc_vii_xii" ]]; then - chr="VII XII" - elif [[ "$(convert_chr_lower "${split}")" == "sc_mito" ]]; then - chr="Mito" - elif [[ "$(convert_chr_lower "${split}")" == "sc_kl_all" ]]; then - chr="I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito A B C D E F" - elif [[ "$(convert_chr_lower "${split}")" == "kl_all" ]]; then - chr="A B C D E F" - elif [[ "$(convert_chr_lower "${split}")" == "virus_20s" ]]; then - chr="20S" - else - chr="" - printf "%s\n\n" "Exiting: -s is not one of the species options." - # exit 1 - fi - - split_with_samtools \ - "${threads}" \ - "${infile}" \ - "${chr}" \ - "${outdir}/${outfile%.bam}.${split}.bam" -} - - -# ------------------------------------ -# Handle arguments, assign variables -# ------------------------------------ -help=""" -# ------------------------------------ -# split_bam_by_species.sh -# ------------------------------------ -Take user-input bam files containing alignments to S. cerevisiae, K. lactis, -and 20 S narnavirus, and split them into distinct bam files for each species, -with three splits for S. cerevisiae: all S. cerevisiae chromosomes not -including chromosome M, all S. cerevisiae including chromosome M, and S. -cerevisiae chromosome M only. - -Names of chromosomes in bam infiles must be in the following format: - - S. cerevisiae (SC) - - I - - II - - III - - IV - - V - - VI - - VII - - VIII - - IX - - X - - XI - - XII - - XIII - - XIV - - XV - - XVI - - Mito - - - K. lactis (KL) - - A - - B - - C - - D - - E - - - 20 S narnavirus - - 20S - -(That is, chrI, chrII, chrA, etc. format is not accepted.) - -The split bam files are saved to a user-defined out directory. - -Dependencies: - - samtools >= version #TBD - -Arguments: - -u safe_mode use safe mode: TRUE or FALSE [default: FALSE] - -i infile bam infile, including path - -o outdir outfile directory, including path; if not found, will be - mkdir'd - -s split what to split out; options: SC_all, SC_no_Mito, SC_VII, - SC_XII, SC_VII_XII, SC_Mito, SC_KL_all, KL_all, virus_20S - [default: SC_all] - - SC_all return all SC chromosomes, including Mito - SC_no_Mito return all SC chromosomes, excluding Mito - SC_VII return only SC chromosome VII - SC_XII return only SC chromosome XII - SC_VII_XII return only SC chromosomes VII and XII - SC_Mito return only SC chromosome Mito - SC_KL_all return all SC and KL chromosomes - KL_all return all KL chromosomes - virus_20S return only 20S narnavirus - - -t threads number of threads = 1; default: 1> -""" - -while getopts "u:i:o:s:t:" opt; do - case "${opt}" in - u) safe_mode="${OPTARG}" ;; - i) infile="${OPTARG}" ;; - o) outdir="${OPTARG}" ;; - s) split="${OPTARG}" ;; - t) threads="${OPTARG}" ;; - *) print_usage "${help}" ;; - esac -done - -[[ -z "${safe_mode}" ]] && safe_mode=FALSE -[[ -z "${infile}" ]] && print_usage "${help}" -[[ -z "${outdir}" ]] && print_usage "${help}" -[[ -z "${split}" ]] && split="SC_all" -[[ -z "${threads}" ]] && threads=1 - -#TEST (undated) -# safe_mode=FALSE -# infile="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1025/align_process_fastqs/bam/5781_G1_IN_merged.bam" -# outdir="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1025/align_process_fastqs/bam" -# split="SC_all" -# threads=1 -# -# echo "${safe_mode}" -# echo "${infile}" -# echo "${outdir}" -# echo "${split}" -# echo "${threads}" -# -# ls -lhaFG "${infile}" -# ls -lhaFG "${outdir}" - - -# ------------------------------------ -# Check dependencies, and check and make variable assignments -# ------------------------------------ -check_etc - - -# ------------------------------------ -# Run samtools to split bam infiles -# ------------------------------------ -main diff --git a/papers/Bresson et al. (Tollervey), Nuclear RNA Decay Pathways Aid Rapid Remodeling of Gene Expression in Yeast, Mol Cell 2017.pdf b/papers/Bresson et al. (Tollervey), Nuclear RNA Decay Pathways Aid Rapid Remodeling of Gene Expression in Yeast, Mol Cell 2017.pdf deleted file mode 100644 index 9c59843..0000000 Binary files a/papers/Bresson et al. (Tollervey), Nuclear RNA Decay Pathways Aid Rapid Remodeling of Gene Expression in Yeast, Mol Cell 2017.pdf and /dev/null differ diff --git a/papers/Chuan et al. (Li), Atria - An ultra-fast and accurate trimmer for adapter and quality trimming, Gigabyte 2021-1015.pdf b/papers/Chuan et al. (Li), Atria - An ultra-fast and accurate trimmer for adapter and quality trimming, Gigabyte 2021-1015.pdf deleted file mode 100644 index 0ceeca8..0000000 Binary files a/papers/Chuan et al. (Li), Atria - An ultra-fast and accurate trimmer for adapter and quality trimming, Gigabyte 2021-1015.pdf and /dev/null differ diff --git a/papers/Curcio, Lutz, Lesage, Ty1 LTR-retrotransposon of budding yeast, Saccharomyces cerevisiae, Microbio Spectr 2015-04.pdf b/papers/Curcio, Lutz, Lesage, Ty1 LTR-retrotransposon of budding yeast, Saccharomyces cerevisiae, Microbio Spectr 2015-04.pdf deleted file mode 100644 index b58a897..0000000 Binary files a/papers/Curcio, Lutz, Lesage, Ty1 LTR-retrotransposon of budding yeast, Saccharomyces cerevisiae, Microbio Spectr 2015-04.pdf and /dev/null differ diff --git a/papers/Haas et al. (Salzberg, White), Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies, NAR 2003.pdf b/papers/Haas et al. (Salzberg, White), Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies, NAR 2003.pdf deleted file mode 100644 index e16361e..0000000 Binary files a/papers/Haas et al. (Salzberg, White), Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies, NAR 2003.pdf and /dev/null differ diff --git a/papers/Haas et al. (Wortman), Approaches to Fungal Genome Annotation, Mycology 2011-09.pdf b/papers/Haas et al. (Wortman), Approaches to Fungal Genome Annotation, Mycology 2011-09.pdf deleted file mode 100644 index 90bb975..0000000 Binary files a/papers/Haas et al. (Wortman), Approaches to Fungal Genome Annotation, Mycology 2011-09.pdf and /dev/null differ diff --git a/papers/Hovhannisyan, Gabaldon, Long non-coding RNA landscape of Candida yeast pathogens (Supplemental), Nat Comm 2021.pdf.pdf b/papers/Hovhannisyan, Gabaldon, Long non-coding RNA landscape of Candida yeast pathogens (Supplemental), Nat Comm 2021.pdf.pdf deleted file mode 100644 index ff97723..0000000 Binary files a/papers/Hovhannisyan, Gabaldon, Long non-coding RNA landscape of Candida yeast pathogens (Supplemental), Nat Comm 2021.pdf.pdf and /dev/null differ diff --git a/papers/Hovhannisyan, Gabaldon, Long non-coding RNA landscape of Candida yeast pathogens, Nat Comm 2021.pdf b/papers/Hovhannisyan, Gabaldon, Long non-coding RNA landscape of Candida yeast pathogens, Nat Comm 2021.pdf deleted file mode 100644 index 32805c9..0000000 Binary files a/papers/Hovhannisyan, Gabaldon, Long non-coding RNA landscape of Candida yeast pathogens, Nat Comm 2021.pdf and /dev/null differ diff --git a/papers/Love, Huber, Anders, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, Genome Biol 2014.pdf b/papers/Love, Huber, Anders, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, Genome Biol 2014.pdf deleted file mode 100644 index e71909d..0000000 Binary files a/papers/Love, Huber, Anders, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, Genome Biol 2014.pdf and /dev/null differ diff --git a/papers/Schulz et al. (Cramer), Transcriptome surveillance by selective termination of noncoding RNA synthesis, Cell 2013-1121.pdf b/papers/Schulz et al. (Cramer), Transcriptome surveillance by selective termination of noncoding RNA synthesis, Cell 2013-1121.pdf deleted file mode 100644 index 3523d20..0000000 Binary files a/papers/Schulz et al. (Cramer), Transcriptome surveillance by selective termination of noncoding RNA synthesis, Cell 2013-1121.pdf and /dev/null differ diff --git a/papers/Smith, Heger, Sudbery, UMI-tools - Modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy, Genome Res 2017.pdf b/papers/Smith, Heger, Sudbery, UMI-tools - Modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy, Genome Res 2017.pdf deleted file mode 100644 index 1698776..0000000 Binary files a/papers/Smith, Heger, Sudbery, UMI-tools - Modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy, Genome Res 2017.pdf and /dev/null differ diff --git a/papers/Song, Florea, Rcorrector - Efficient and accurate error correction for Illumina RNA-seq reads, Giga Science 2015.pdf b/papers/Song, Florea, Rcorrector - Efficient and accurate error correction for Illumina RNA-seq reads, Giga Science 2015.pdf deleted file mode 100644 index 87a1e90..0000000 Binary files a/papers/Song, Florea, Rcorrector - Efficient and accurate error correction for Illumina RNA-seq reads, Giga Science 2015.pdf and /dev/null differ diff --git a/results/2022-1018/notebook.md b/results/2022-1018/notebook.md deleted file mode 100644 index a976175..0000000 --- a/results/2022-1018/notebook.md +++ /dev/null @@ -1,331 +0,0 @@ - -# 2022-1018-1019 -
-Table of Contents - - -1. [2022-1018](#2022-1018) - 1. [Installing local instance of `Trinity`](#installing-local-instance-of-trinity) - 1. [Use `Docker` to run local instance of `Trinity`](#use-docker-to-run-local-instance-of-trinity) - 1. [Alias to prevent excessive typing](#alias-to-prevent-excessive-typing) - 1. [Potentially interesting/useful links for studying `Trinity`](#potentially-interestinguseful-links-for-studying-trinity) - 1. [Set up directory structure for 2022_transcriptome-construction](#set-up-directory-structure-for-2022_transcriptome-construction) - 1. [Meeting with Alison, 2022-1018](#meeting-with-alison-2022-1018) - 1. [Questions](#questions) - 1. [E-mails between me and Alison \(2022-1017-1019\)](#e-mails-between-me-and-alison-2022-1017-1019) - 1. [E-mail 1: "Fred Hutch Server and a few of my scripts"](#e-mail-1-fred-hutch-server-and-a-few-of-my-scripts) - 1. [Scripts](#scripts) - 1. [Contents](#contents) - 1. [E-mail 2: "Fred Hutch Server and a few of my scripts"](#e-mail-2-fred-hutch-server-and-a-few-of-my-scripts) - 1. [Attached files](#attached-files) - 1. [Contents](#contents-1) - 1. [E-mail 3: "Fred Hutch Server and a few of my scripts"](#e-mail-3-fred-hutch-server-and-a-few-of-my-scripts) - 1. [Attached files](#attached-files-1) - 1. [Contents](#contents-2) - 1. [E-mail 4: "Fred Hutch Server and a few of my scripts"](#e-mail-4-fred-hutch-server-and-a-few-of-my-scripts) - 1. [Script](#script) - 1. [Contents](#contents-3) -1. [2022-1019](#2022-1019) - 1. [Meeting with Alison and Toshi, 2022-1019](#meeting-with-alison-and-toshi-2022-1019) - 1. [Design](#design) - 1. [Background](#background) - 1. [Goals for me](#goals-for-me) - 1. [Next steps](#next-steps) - 1. [E-mails between me and Alison \(2022-1019\)](#e-mails-between-me-and-alison-2022-1019) - 1. [E-mail 1: "Nascent normalization remains baffling"](#e-mail-1-nascent-normalization-remains-baffling) - 1. [File](#file) - 1. [Contents](#contents-4) - 1. [Notes from meeting](#notes-from-meeting) - - -
-
- - -# 2022-1018 - -## Installing local instance of `Trinity` -[Instructions.](https://github.com/trinityrnaseq/trinityrnaseq/wiki/Trinity-in-Docker#run-trinity-using-docker) -1. Install `Docker`; then, log in to `Docker` -2. `docker pull trinityrnaseq/trinityrnaseq` -
-
- - -## Use `Docker` to run local instance of `Trinity` -```bash -#!/bin/bash -#DONTRUN - -docker run --rm -v`pwd`:`pwd` trinityrnaseq/trinityrnaseq Trinity \ - --seqType fq \ - --left `pwd`/reads_1.fq.gz \ - --right `pwd`/reads_2.fq.gz \ - --max_memory 1G \ - --CPU 4 \ - --output `pwd`/trinity_out_dir -``` - - -### Alias to prevent excessive typing -```bash -#!/bin/bash -#DONTRUN - -unalias Trinity -alias Trinity="docker run --rm -v`pwd`:`pwd` --platform linux/amd64 trinityrnaseq/trinityrnaseq Trinity" -``` -
-
- - -## Potentially interesting/useful links for studying `Trinity` -- https://biohpc.cornell.edu/doc/RNA-Seq-2019-exercise1-2.html -- https://github.com/trinityrnaseq/trinityrnaseq/wiki/Running-Trinity -- https://www.broadinstitute.org/broade/trinity-screencast -- https://github.com/trinityrnaseq/trinityrnaseq/wiki/Trinity-in-Docker#run-trinity-using-docker -- https://informatics.fas.harvard.edu/best-practices-for-de-novo-transcriptome-assembly-with-trinity.html -
-
- - -## Set up directory structure for 2022_transcriptome-construction -1. Create repo on Github per, e.g., [these instructions](https://github.com/prog4biol/pfb2022/blob/master/unix.md#creating-a-new-repository) - a. Private (for now) - b. R-styled `.gitignore` (to be updated) - c. No license (for now) - -```bash -#!/bin/bash -#DONTRUN - -dir_proj="projects-etc" - -cd # Go home -mkdir "${dir_proj}" && cd "${dir_proj}" - -# Run first time only -# gh auth login -# ? What account do you want to log into? GitHub.com -# ? What is your preferred protocol for Git operations? HTTPS -# ? Authenticate Git with your GitHub credentials? Yes -# ? How would you like to authenticate GitHub CLI? Login with a web browser -# -# ! First copy your one-time code: A6F8-2289 -# Press Enter to open github.com in your browser... -# ✓ Authentication complete. -# - gh config set -h github.com git_protocol https -# ✓ Configured git protocol -# ✓ Logged in as kalavattam - -# Clone 2022_transcriptome-construction repo # If necessary, run `brew install gh` -gh repo clone kalavattam/2022_transcriptome-construction - -mkdir -p 2022_transcriptome-construction/{bin,data,results} # Start with only these directories for the time being -# Save this mardown document to notebook.md in 2022_transcriptome-construction/results - -# Push it to 2022_transcriptome-construction/results -git add results/notebook.md -git commit -m 'Initial commit: Uploading notebook.md' -git push origin main -``` -
-
- - -## Meeting with Alison, 2022-1018 -- Label yeast (*S. cerevisiae*) with 4tU for 6 minutes: this allows us to identify nascent transcription -- Isolate RNA from frozen pellet -- *K. lactis* spiked in during the RNA-isolation step; thus, the RNA is comprised of two species -- Pull down 40 µg: biotin-streptavidin chemistry -- However, after biotin conjugation but before streptavidin-bead binding, take input: 10% taken out to examine steady-state transcription -- Perform column cleanups -- Use of "Universal Plus Total" kit with custom yeast rRNA probe set, allowing the isolation of stranded cDNA -- Align to *S. cerevisiae* and *K. lactis* separately -- Run `samtools` script that counts the number of alignments (successful) in bam files -- Calculate ratio of *K. lactis* counts to *S. cerevisiae* counts, e.g., `KL/SC` -- Calculate a "ratio of ratios," i.e., an additional normalization: `parent/mutant` -
-
- - -## Questions -- Where does `Trinity` transcriptome assembly/annotation fit in the above the steps? -- How do we evaluate the annotations output by `Trinity`? What is the "ground truth"? Is there a systematic means of evaluation? -- normalization_station.pptx, 2/14: calculation of "ratio of ratios" is described as `R_sample/R_parental`, but looks like `R_parental/R_sample` in the Excel slide (e.g., `parent/mutant`); which is correct and/or what is my misunderstanding here? -- What is the purpose of the scaling factor here? What is it doing and/or what is it correcting for? -- Are these antisense RNA molecules mRNAs (forgive my ignorance)? -- RPKM/FPKM normalization is a form of RNA-seq normalization that is known to perform poorly when assumptions for library-size normalization (namely, as assumption that extracted mRNA/cell is the same `*`) are violated; have we considered trying other forms of normalization? I wonder if that's something I could try on the side while Alison moves forward with... -- What does "single tag" and "double tag" mean again? -
-
- - -## E-mails between me and Alison (2022-1017-1019) - -### E-mail 1: "Fred Hutch Server and a few of my scripts" -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Sent: Monday, October 17, 2022 5:01 PM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: Fred Hutch Server and a few of my scripts - - -#### Scripts -- `New_101122_sc_bowtie_4tu.sh` -- `bam_split_paired_end.sh` -- `trin4.1_adjusted_salmo.sh` -- `map2genome_gff.sh` - - -#### Contents -Hi Kris! - -I know Toshi got a really fancy computer, so it may be better/faster to do this locally for you. For me, I use the server. - -Here is how you log in: [link](https://sciwiki.fredhutch.org/compdemos/first_rhino/) - -Here are the modules available: [link](https://sciwiki.fredhutch.org/scicomputing/bio-modules-18.04/) - -I attached some of the scripts I use for alignment and annotation. They are in brief: -1. Bowtie 4tU: does alignment and splits strands for paired end RNAseq -2. split paired end: called by bowtie 4tU makes strand specific bam files. Both 1 and 2 were mainly written by Christine's partner who is a software person. I have Frankensteined them to adjust a few things. -3. trin4.1: the way I ran trinity. There are probably ways these settings could be tweaked. They were stollen from [this pre-print](https://www.biorxiv.org/content/10.1101/575837v1) and only changed slightly. -4. map2genome: this takes the .fasta output and makes it a .gff annotation format aligned to the yeast genome -5. Not included: bedtools classing of transcripts. I have messy notes on this but lots of it was directly in terminal. - -Trinity creates a lot of junk transcripts. It will connect things that overlap, and generally is oversensitive. I have tried filtering by mapping quality the bams that go into trinity, this helps but hasn't been the silver bullet. *I think running trinity with a bunch of different setting may be the solution*, but for me at least trinity takes a long long time to run so we will need to be strategic in our testing. - -Hope you feel better. Take your time with this; I know it's a lot of information. - -Best, -Alison - - -### E-mail 2: "Fred Hutch Server and a few of my scripts" -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Sent: Tuesday, October 18, 2022 2:11 PM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: Re: Fred Hutch Server and a few of my scripts - - -#### Attached files -- `heatmaps_nab3_nrd1.pptx` -- `20220928_lab_meeting.pptx` -- `scaling_factor.xlsx` - - -#### Contents -NA - - -### E-mail 3: "Fred Hutch Server and a few of my scripts" -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Sent: Tuesday, October 18, 2022 2:12 PM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: Re: Fred Hutch Server and a few of my scripts - - -#### Attached files -NA - - -#### Contents -(Concerns Nature Reviews on noncoding RNAs.) -- [How noncoding RNAs began to leave the junkyard | Nature Methods](https://www.nature.com/articles/s41592-022-01627-8?utm_source=nmeth_etoc&utm_medium=email&utm_campaign=toc_41592_19_10&utm_content=20221011) -- [Regulatory non-coding RNAs: everything is possible, but what is important? | Nature Methods](https://www.nature.com/articles/s41592-022-01629-6?utm_source=nmeth_etoc&utm_medium=email&utm_campaign=toc_41592_19_10&utm_content=20221011) -- [Some roads ahead for noncoding RNAs | Nature Methods](https://www.nature.com/articles/s41592-022-01628-7?utm_source=nmeth_etoc&utm_medium=email&utm_campaign=toc_41592_19_10&utm_content=20221011) - - -### E-mail 4: "Fred Hutch Server and a few of my scripts" -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Sent: Tuesday, October 18, 2022 7:22 PM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: Re: Fred Hutch Server and a few of my scripts - - -#### Script -- `AG_CC_read_counts_RNA_April2022.sh` - - -#### Contents -I realized I never gave you the script that counts reads for normalization. Here is that! (No need to look at it tonight!!!) - -Alison -
-
- - -# 2022-1019 - -## Meeting with Alison and Toshi, 2022-1019 - -### Design -- With Alison's project, comparing three types of Q cells -- For parental and mutant strains, there are two lines (except double mutant strains) -- Add 4tU, label for 6 minutes: transcribed RNAs within this window will include 4tU -- Sequence all RNA - - The total is considered "steady state" RNA - - Pull down the transcripts that contain 4tU (using "click chemistry") -- Rationale for normalization: On a per-cell level, how much is transcription changing? Unless we normalize, we can't say if, e.g., "antisense is only increasing or sense is going down" - - This rationale is not super clear -- From 40 µg total RNA, end up with 16 µL of nascent RNA at a concentration of approximately 5 ng/µL - - -### Background -- In Q, many genes have highly elevated antisense transcription -- Want to establish what among these have functional significance -- Experimental system: Have depleted genetic factors with roles in the termination of antisense transcription -- We'll know this experimental system work if/when... - - we see that antisense transcription is up for genes - - antisense transcription termination is blocked, i.e., the ncRNA is longer - - -### Goals for me -- Help Alison with normalization - - The logic for *ratio of ratios*: "If *S. cerevisiae* goes up, we want the scaling factor to go up." - - `#QUESTION` But surely there's another way to calculate a number with this property, right? - - `#NOTE` Toshi requested that Alison try a different calculation/normalization scheme - - `#TODO` Touch base with Alison on what she's doing now - - I think this is it: - - First, normalize to depth - - Then, calculate size factor for the strain (take the ratio `KL/SC`) - - "One strain set as basis" `#WHAT` -- Need to establish an automated way to annotate ncRNAs with Trinity - - Non-trivially difficult: No ORF as with sense transcripts - - -### Next steps -- Get Alison's code running on the cluster -- Systematize it -- `#GENERAL` Learn how people do things and search for more streamlined ways to do things -- Look into additional programs to do transcriptome annotation like Trinity, but touch base with Alison before trying any of them: She may have tried them already and may then have input -
-
- - -## E-mails between me and Alison (2022-1019) - - -### E-mail 1: "Nascent normalization remains baffling" -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Sent: Wednesday, October 19, 2022 7:30 AM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: Nascent normalization remains baffling - - -#### File -- `normalization_station.pptx` - - -#### Contents -Hi Toshi - - -I messed around with the normalization, trying to get the big nascent discrepancy to make sense and I couldn't. I have attached the details. - -(Email scheduled for 7:30 am) - -Alison - - -#### Notes from meeting -(See above notes) diff --git a/results/2022-1020/notebook.md b/results/2022-1020/notebook.md deleted file mode 100644 index e37ecb1..0000000 --- a/results/2022-1020/notebook.md +++ /dev/null @@ -1,291 +0,0 @@ - -# 2022-1020 -
-Table of Contents - - -1. [E-mails between Alison, Toshi, and me](#e-mails-between-alison-toshi-and-me) - 1. [E-mail 1.1 \(from Alison\): "Quality control analysis"](#e-mail-11-from-alison-quality-control-analysis) - 1. [File](#file) - 1. [Contents](#contents) - 1. [E-mail 1.2 \(from Kris\): "Quality control analysis"](#e-mail-12-from-kris-quality-control-analysis) - 1. [Contents](#contents-1) - 1. [E-mail 1.3 \(from Toshi\): "Quality control analysis"](#e-mail-13-from-toshi-quality-control-analysis) - 1. [Contents](#contents-2) - 1. [E-mail 2 \(from Alison\): "More Code!"](#e-mail-2-from-alison-more-code) - 1. [Files](#files) - 1. [Contents](#contents-3) - 1. [E-mail 3 \(from Alison\): "File Locations"](#e-mail-3-from-alison-file-locations) - 1. [Contents](#contents-4) - 1. [E-mail 4 \(from Alison\): "Hand Curation and so many annotation files"](#e-mail-4-from-alison-hand-curation-and-so-many-annotation-files) - 1. [Files](#files-1) - 1. [Contents](#contents-5) - 1. [E-mail 5 \(from Alison\): "Small fraction of AS transcripts functional on first pass"](#e-mail-5-from-alison-small-fraction-of-as-transcripts-functional-on-first-pass) - 1. [File](#file-1) - 1. [Contents](#contents-6) -1. [Brief notes on Fred Hutch's cluster resources](#brief-notes-on-fred-hutchs-cluster-resources) -1. [New slides from Alison](#new-slides-from-alison) -1. [How Alison is calling Trinity](#how-alison-is-calling-trinity) - - -
-
- - -## E-mails between Alison, Toshi, and me - -### E-mail 1.1 (from Alison): "Quality control analysis" -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Sent: Thursday, October 20, 2022 2:26 PM -To: [Tsukiyama, Toshio](ttsukiya@fredhutch.org) -Cc: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: Quality control analysis - - -#### File -- `replicate_comparison.pptx` - - -#### Contents -Some more quality control analysis in lieu of yesterday's conversation. I feel data is good enough to keep going with analysis. Whether or not 6126/7716 is really much more drastically scaled or if this is artifact of technique is hard to know, but I feel data is otherwise looking very reproduceable between replicates so far. - -Kris - I will send you some more scripts related to this analysis in a separate email. - -Alison - - -### E-mail 1.2 (from Kris): "Quality control analysis" - -#### Contents -Sounds good, Alison! - -Yes, it seems reproducible to me too. - -In slides 5 and 6, what is AS? (Sorry if I forgot already.) - -Also, a quick thing on Spearman/Pearson: Spearman is less sensitive to outliers and more influenced by the centeredness of the data. And vice versa: Pearson is more sensitive to outliers and less influenced by the centeredness of the data. - -Interesting how PC1 captures the vast majority of variance in the data but PC2 is the PC that actually separates nascent from steady state. - -Kris - - -### E-mail 1.3 (from Toshi): "Quality control analysis" - -#### Contents -Your data sets looks good, if I understand correctly. I am glad to see single- and doule-depletion strains are similar. - -toshi - - -### E-mail 2 (from Alison): "More Code!" -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Date: Thursday, October 20, 2022 at 3:28 PM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: More Code! - - -#### Files -- `replicate_ratio_comparison_mRNA.Rmd` -- `mRNA_Nascent_Nab3.txt` -- `AS_mRNA_Nascent_Nab3.txt` -- `combined_mRNA.txt` -- `Correlation.sh` -- `19_oct_bamcoverage_scale_HARD2.sh` -- `13_OCT_Heatmaps.sh` -- `3heatmap.sh` - - -#### Contents -Hi Kris - - -I have attached: - -- R-notebook with replicate math from previous email as well as associated .txt files - - R version 3.6.3 (2020-02-29) -- "Holding the Windsock" -- a few deepTools scripts - - correlation for bam correlation - - bam coverage - making bigwigs from bam files - - 2 heatmap scripts -No rush on any of this. I am not too worried that there are glaring issues here, but since much of this is code of my own making, it's always possible. - -Alison - - -### E-mail 3 (from Alison): "File Locations" -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Date: Thursday, October 20, 2022 at 5:56 PM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: File Locations - - -#### Contents -Hi Kris - - -Nab3 depletion data -`~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla` - -Folders of interest: -- I split samples for speed reasons. Raw fastq R1 and R3 reads in these 3 folders: - - 5782_7714 - - 6126_7716 - - 6125_7718 - - Within each folder is UMI folder with R2, I1 and I2 reads. We don't currently have a pipeline with includes them, but I have thought it would be good for a while. - - I copied all aligned bams into SC_bams_all - - Output of HTSeq count (one for each folder above): - - `~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/6126_7716/S_cerevisiae_BamFiles/bam_resort/feature_counts_7716_6126` - -WT G1 vs Q data -`~/tsukiyamalab/alisong/WTQvsG1/` - -Folders of interest: -- Raw fastq info - - `~/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot` - - each sample has a folder. The Bioinformatics core does it differently now. So fastq files used to need to be merged. - - "IP" = Nascent, "IN" = SteadyState -- Trinity Run Location - - `~/tsukiyamalab/alisong/WTQvsG1/de_novo_annotation/all_at_once/correct_bams` -- Map trinity output to genome location - - `~/tsukiyamalab/alisong/WTQvsG1/de_novo_annotation/map_trin_to_genome/try2` -- I started thinking about annotation automation. Not a ton here but some - - `~/tsukiyamalab/alisong/WTQvsG1/automation_of_annotation` -- I attempted to break AS transcripts into Classes. That all happened here. This is probably the biggest mess of any of the above: - - `~/tsukiyamalab/alisong/WTQvsG1/MANUAL/AS_CLASSES` - - and: `~/tsukiyamalab/alisong/WTQvsG1/MANUAL/AS_CLASSES/jan2022_good` - -Steady State Q entry Data -- `~/tsukiyamalab/alisong/TRF4_SSRNA_April2022/Project_agreenla` -- This was all done for an old project but might be relevant to Toshi's interests and or the larger project - -All the R stuff is local to my laptop/on my OneDrive. Happy to figure out a way to share than more easily. Also please let me know if there are file permission issues. - -Alison - - -### E-mail 4 (from Alison): "Hand Curation and so many annotation files" -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Date: Thursday, October 20, 2022 at 6:24 PM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: Hand Curation and so many annotation files - - -#### Files -- `Trintity_minus.gtf` -- `Trinity_plus.gtf` -- `Trinity GTF_PROOFING TIME - keep+\_1st_Try.gtf` -- `final_downloadable.gtf` -- `downloadable_collapsed.gtf` -- `GSE95556_Sc.cerevisiae.feature.anno_Steinmetz_2013.gtf` -- `sacCer3.intergenic.convergent.bed` -- `sacCer3.intergenic.divergent.bed` -- `sacCer3.intergenic.tandem.bed` -- `Saccharomyces_cerevisiae.R64-1-1.104.gtf` -- `combined.gtf` - - -#### Contents -Kris - - -I have attached the Trinity gtf output before and after annotation: -- Trinity plus and minus are each strand separately before any curation -- "PROOFING TIME" - was after first pass -- final downloadable - after second pass -- final downloadable collapsed - fully contained transcripts were merged with gffcompare -I did all the curation in google sheets because excel destroys .gtf files: [link](https://docs.google.com/spreadsheets/d/14NWzq4HJQfft_yWxbmT4bi6C8w1G0Q3PUBbVDO7XguM/edit#gid=1833438810) - -I have also attached some general yeast annotation files: -- `GSE95556_Sc.cerevisiae.feature.anno_Steinmetz_2013.gtf` - great annotation -- intergenic bed - bed files by orientation of intergenic region -- R64 - one of the official recent annotations, though definitely not the most recent. -- `combined.gtf` - every CDS, and bunch of annotations from various noncoding annotation attempts - this is the file that is used for HTseq count btw - -Alison - - -### E-mail 5 (from Alison): "Small fraction of AS transcripts functional on first pass" -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Date: Thursday, October 20, 2022 at 11:35 PM -To: [Tsukiyama, Toshio](ttsukiya@fredhutch.org) -Cc: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: Small fraction of AS transcripts functional on first pass - - -#### File -- `Sense_Antisense.pptx` - - -#### Contents -From my analysis it looks like because both transcription and steady state RNA level go up so much, that very few genes are down. I suspect if I removed sized factors from this data it would look like a lot more antisense transcripts are functional, and I think that is what happened with the 2013 paper as a spike in control is not mentioned. - -I think the functional fraction is still very interesting, and there's a lot of room to play around with gating to really understand what's going on a bit better - perhaps log2foldchange 2 is too harsh a cut off. Also quite interested in digging more into what mRNAs NNS regulates in Q, and I will plan to spend more time on that soon. - -Alison -
-
- - -## Brief notes on Fred Hutch's cluster resources -``` -# Log into FH cluster -ssh kalavatt@rhino.fhcrc.org -kalavatt@rhino.fhcrc.org's password: ******************* -``` -- `Rhino`: shared cluster node -- `Gizmo`: reserved cluster node - -More details recorded in gists [here](https://gist.github.com/kalavattam). -
-
- - -## New slides from Alison -- The new normalization approach seems to be effective -- Results appear to be reproducible between replicates -- PC1 captures the vast majority of variance in the data but PC2 is the PC that actually separates nascent from steady state - - The vast majority of variance may be the random-variable nature of the counts for low-expression genes, right? -
-
- - -## How Alison is calling Trinity -- See `trin4.1_adjusted_salmo.sh` -```bash -#!/bin/bash -#DONTRUN - -Trinity \ - --genome_guided_bam ${file} \ - --max_memory 50G \ - --SS_lib_type FR \ - --normalize_max_read_cov 200 \ - --jaccard_clip \ - --genome_guided_max_intron 1002 \ - --min_kmer_cov 2 \ - --max_reads_per_graph 500000 \ - --min_glue 2 \ - --group_pairs_distance 700 \ - --min_contig_length 200 \ - --full_cleanup \ - --output ./trinity_trin4s_${file%.bam_sorted_new.bam} -``` -- `--genome_guided_bam`: "If a genome sequence is available, Trinity offers a method whereby reads are first aligned to the genome, partitioned according to locus, followed by *de novo* transcriptome assembly at each locus" ([more info](https://github.com/trinityrnaseq/trinityrnaseq/wiki/Genome-Guided-Trinity-Transcriptome-Assembly)) - - "In this use-case, the genome is only being used as a substrate for grouping overlapping reads into clusters that will then be separately fed into Trinity for *de novo* transcriptome assembly." - - "This is very much *unlike* typical genome-guided approaches (e.g., cufflinks) where aligned reads are stitched into transcript structures and where transcript sequences are reconstructed based on the reference genome sequence." - - "Here, transcripts are reconstructed based on the actual read sequences." -- `--max_memory`: suggested max memory to use by Trinity, where limiting can be enabled -- `--SS_lib_type`: if paired, RF or FR (dUTP method = RF); if single, F or R; this means that left-end reads are on the forward strand and right-end reads are on the reverse strand -- `--normalize_max_read_cov`: defaults to 200, an *in silico* read normalization option - - `#QUESTION` Does it mean that it sets the maximum coverage to 200x? - - `#ANSWER` It means that "poorly covered regions \[are\] unchanged, but reads \[are\] down-sampled in high-coverage regions" (see slide 16 [here](https://biohpc.cornell.edu/lab/doc/Trinity_workshop.pdf)) - - "May end up using just 20% of all reads reducing computational burden with no impact on assembly quality" - - `#NOTE` This normalization method has "mixed reviews" – \[it\] tends to skip whole genes -- `--jaccard_clip`: set if you have paired reads and you expect high gene density with UTR overlap (use FASTQ input file format for reads) - - `#QUESTION`: Our input appears to be a bam; does this affect things? -- `--genome_guided_max_intron`: "...use a maximum intron length that makes most sense given your targeted organism" ([more info](https://github.com/trinityrnaseq/trinityrnaseq/wiki/Genome-Guided-Trinity-Transcriptome-Assembly)) -- `--min_kmer_cov`: with a setting of 2, it means that singleton k-mers will not be included in initial Inchworm contigs (suggested by the Trinity team) -- `--max_reads_per_graph`: maximum number of reads to anchor within a single graph (default: 200000) -- `--min_glue`: min number of reads needed to glue two inchworm contigs together. (default: 2) -- `--group_pairs_distance`: maximum length expected between fragment pairs (default: 500) (reads outside this distance are treated as single-end) -- `--min_contig_length`: minimum assembled contig length to report (def=200, must be >= 100) -- `--full_cleanup`: only retain the Trinity fasta file, rename as `${output_dir}.Trinity.fasta` -- `--output`: name of directory for output (will be created if it doesn't already exist) default(your current working directory: `/usr/local/src/trinity_out_dir` note: must include 'trinity' in the name as a safety precaution!) diff --git a/results/2022-1021/notebook.md b/results/2022-1021/notebook.md deleted file mode 100644 index 19d1d38..0000000 --- a/results/2022-1021/notebook.md +++ /dev/null @@ -1,400 +0,0 @@ - -# 2022-1021-1024 -
-Table of contents - - -1. [2022-1021-1023](#2022-1021-1023) - 1. [Working through HPC materials, tutorials](#working-through-hpc-materials-tutorials) - 1. [Logging on to `rhino` for the first time](#logging-on-to-rhino-for-the-first-time) - 1. [More studying up on `Trinity`](#more-studying-up-on-trinity) - 1. [Trial run, etc. for `Trinity`](#trial-run-etc-for-trinity) - 1. [Copy the file to the directory for upcoming work](#copy-the-file-to-the-directory-for-upcoming-work) - 1. [Filter the bam file such that it contains only chrVII](#filter-the-bam-file-such-that-it-contains-only-chrvii) - 1. [On how to call `Trinity`](#on-how-to-call-trinity) - 1. [On making a `.gff` from the `Trinity`-assembled transcriptome](#on-making-a-gff-from-the-trinity-assembled-transcriptome) - 1. [Use `GMAP`](#use-gmap) - 1. [Generate genome indices for `GMAP`/build a "`GMAP` database"](#generate-genome-indices-for-gmapbuild-a-gmap-database) - 1. [Try making a `.gff` from the `Trinity`-assembled transcriptome based on the script from Alison](#try-making-a-gff-from-the-trinity-assembled-transcriptome-based-on-the-script-from-alison) - 1. [Relevant links for the generation of a `.gff` from a `Trinity`-assembled transcriptome, etc.](#relevant-links-for-the-generation-of-a-gff-from-a-trinity-assembled-transcriptome-etc) -1. [2022-1024](#2022-1024) - 1. [Going over Trinity assessments with Alison](#going-over-trinity-assessments-with-alison) - 1. [Five things to try out/work on](#five-things-to-try-outwork-on) - 1. [Meeting with Toshi about additional things to work on](#meeting-with-toshi-about-additional-things-to-work-on) - 1. [mRNA: *steady-state* versus *nascent*](#mrna-steady-state-versus-nascent) - 1. [Strategy hit upon by Toshi and Alison](#strategy-hit-upon-by-toshi-and-alison) - 1. [Goals \(per Toshi\)](#goals-per-toshi) - 1. [Additional things \(low priority\)](#additional-things-low-priority) - - -
-
- - -## 2022-1021-1023 - -### Working through HPC materials, tutorials - -#### Logging on to `rhino` for the first time -[Tutorial here](https://sciwiki.fredhutch.org/compdemos/first_rhino/) -- Command to request one's own compute node: `grabnode` -- Follow the on-screen prompts -
-
- - -### More studying up on `Trinity` -(See 2013 *Nat Biotechnol* manuscript.) -1. What is `Trinity` and what does it do? - + Program that assembles full-length transcriptome *de novo*, i.e., without the need for a reference genome - + Additional breakdown of Inchworm, Chrysalis, and Butterfly in the 2013 *Nat Biotechnol* manuscript -2. What is a de Bruijn graph? - - In this type of graph, a node is defined by a sequence of a fixed length of k nucleotides (“k-mer”, with k considerably shorter than the read length), and nodes are connected by edges, if they perfectly overlap by k-1 nucleotides, and the sequence data supports this connection - - This compact representation allows for enumerating all possible solutions by which linear sequences can be reconstructed given overlaps of k-1. For transcriptome assembly, each path in the graph represents a possible transcript - - A scoring scheme applied to the graph structure can rely on the original read sequences and mate-pair information to discard nonsensical solutions (transcripts) and compute all plausible ones -
-
- - -### Trial run, etc. for `Trinity` -Work with this file, `5781_Q_IP_sorted.bam`, at this location, `/home/kalavatt/tsukiyamalab/alisong/WTQvsG1/automation_of_annotation/test1` - - -#### Copy the file to the directory for upcoming work -```bash -#!/bin/bash -#DONTRUN - -dir_from="/home/kalavatt/tsukiyamalab/alisong/WTQvsG1/automation_of_annotation/test1" -dir_to="/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1021" -file="5781_Q_IP_sorted.bam" - -cp "${dir_from}/${file}" "${dir_to}/${file}" -``` - - -#### Filter the bam file such that it contains only chrVII -```bash -#!/bin/bash -#DONTRUN - -ml SAMtools/1.16.1-GCC-11.2.0 - -samtools view *.bam | head -5 -``` - -Output to console -```txt -HISEQ:1007:HGV5NBCX3:1:1207:3282:88984 99 chrI 147 17 49M = 307 209 TTACCCTGTCTCATTCAACCATACCACTCCCAACTACCATCCATCCCTC GGGGIGIIIIGGIIIIIIIGIGIIIIIIIGIIIIIIIGIIIIIGIIIGI AS:i:75 XS:i:52 XN:i:0 XM:i:3 XO:i:0 XG:i:0 NM:i:3 MD:Z:10C19G3C14 YS:i:90 YT:Z:CP -HISEQ:1007:HGV5NBCX3:1:1216:10817:56273 99 chrI 159 2 49M = 234 123 ATTCAACTATACCACTCCCAACTACCATCCATCTCTCTACTTACTACCA GGGGIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIGGIIIIIIIGIIIG AS:i:66 XS:i:78 XN:i:0 XM:i:4 XO:i:0 XG:i:0 NM:i:4 MD:Z:7C10G3C10C15 YS:i:80 YT:Z:CP -HISEQ:1007:HGV5NBCX3:1:1112:7352:13135 99 chrI 226 2 19M1I29M = 433 257 CCAATTACCCATATCCTACTCCACTGCCACTTACCCTACCATTCCCCTA GGGGGGGIIIIIGIIIIIIIIIIIIIGIIIGIGGGGAGGIIIIGIIIII AS:i:73 XS:i:75 XN:i:0 XM:i:2 XO:i:1 XG:i:1 NM:i:3 MD:Z:16A25A5 YS:i:73 YT:Z:CP -HISEQ:1007:HGV5NBCX3:1:2210:9324:79218 99 chrI 229 11 16M1I32M = 295 115 ATTACCCATATCCTACTCCACTGCCACTTACCCTACCATTACCCTACCA GGGGGGIIIIIIIIIIIIIIIIIIIGGGIIIIIIIIIGIIIIIIIIIIG AS:i:80 XS:i:82 XN:i:0 XM:i:1 XO:i:1 XG:i:1 NM:i:2 MD:Z:13A34 YS:i:90 YT:Z:CP -HISEQ:1007:HGV5NBCX3:1:1216:10817:56273 147 chrI 234 2 11M1I37M = 159 -123 CCATATCCTACTCCACTGCCACTTACCCTACCATTACCCTACCATCCAC IIGGGIIIIGGGIGGGGIIIIIIGGGIIIGIIIGGGIIGGGIGGGGGGG AS:i:80 XS:i:83 XN:i:0 XM:i:1 XO:i:1 XG:i:1 NM:i:2 MD:Z:8A39 YS:i:66 YT:Z:CP -``` - -```bash -#!/bin/bash -#DONTRUN - -samtools index "${file}" - -samtools view -b "${file}" chrVII > "${file%.bam}.chrVII.bam" -samtools index "${file%.bam}.chrVII.bam" -``` - - -#### On how to call `Trinity` -Adapted from what Alison is doing: `submit-Trinity.sh` -```bash -#!/bin/bash -#DONTRUN - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -# submit-Trinity.sh -# KA - -module purge -module load Trinity/2.10.0-foss-2019b-Python-3.7.4 - -file="5781_Q_IP_sorted.chrVII.bam" # Separately, try 5781_Q_IP_sorted.bam - -Trinity \ - --genome_guided_bam "${file}" \ - --CPU "${SLURM_CPUS_ON_NODE}" \ - --max_memory 50G \ - --SS_lib_type FR \ - --normalize_max_read_cov 200 \ - --jaccard_clip \ - --genome_guided_max_intron 1002 \ - --min_kmer_cov 2 \ - --max_reads_per_graph 500000 \ - --min_glue 2 \ - --group_pairs_distance 700 \ - --min_contig_length 200 \ - --full_cleanup \ - --output "./trinity_trin4s_${file%.bam}" -``` -Essentially, above contents saved to the script `submit-Trinity.sh` in directory `results/2022-1021`, which is where output from `Trinity` and output from SLURM (e.g., `stderr` and `stdout`) is saved as well - -Run time for the full genome -- start: Friday, October 21, 2022: 15:46:37 -- stop: Friday, October 21, 2022: 17:37:29 - - -#### On making a `.gff` from the `Trinity`-assembled transcriptome - -##### Use `GMAP` -For example, following the instructions [here](https://www.biostars.org/p/248479/) - -However, this requires that we have `GMAP` genome indices (i.e., `GMAP` database) for the model organism of interest, *S. cerevisae* - - -##### Generate genome indices for `GMAP`/build a "`GMAP` database" -Apparently, we need to have only one chromosome per FASTA entry -```bash -#!/bin/bash -#DONTRUN - -# Download UCSC sacCer3 chromosomes from, e.g., -#+ https://hgdownload.soe.ucsc.edu/goldenPath/sacCer3/chromosomes/ - -mkdir ~/genomes -cd genomes || echo "cd failed. Check on this." - -wget --no-parent -r https://hgdownload.soe.ucsc.edu/goldenPath/sacCer3/chromosomes/ - -cd hgdownload.soe.ucsc.edu/goldenPath/sacCer3/chromosomes || echo "cd failed. Check on this." -cd ../.. -mv sacCer3/ ../.. # Move sacCer3/chromosomes directly into directory 'genomes' - -# Do some cleanup -cd .. -rm robots.txt && rmdir goldenPath -cd .. -rmdir hgdownload.soe.ucsc.edu - -cd sacCer3/chromosomes -rm *\?C=* # Remove non-necessary index-related files - -pwd -# /home/kalavatt/genomes/sacCer3/chromosomes # Use this path for running 'gmap_build' -ls /home/kalavatt/genomes/sacCer3/chromosomes/*.fa.gz - -# Make a location to store the indices, etc. for GMAP -cd .. || echo "cd failed. Check on this." -mkdir GMAP - -# Get the twoBit file, convert it to fasta, then try building the genome from that -curl \ - https://hgdownload.soe.ucsc.edu/goldenPath/sacCer3/bigZips/sacCer3.2bit \ - > sacCer3.2bit - -conda create -n ucsc_env -c bioconda ucsc-twobittofa - -grabnode -conda activate ucsc_env -twoBitToFa sacCer3.2bit sacCer3.fa -exit - -``` - -Call `gmap_build` from a bespoke script, `submit-gmap_build.sh`, that submits a job to SLURM -```bash -#!/bin/bash -#DONTRUN - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=2 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -# submit-gmap_build.sh -# KA - -ml GMAP-GSNAP/2018-07-04-foss-2018b - -location_for_output="${HOME}/genomes/sacCer3/GMAP" -fasta="${HOME}/genomes/sacCer3/sacCer3.fa" - -# gmap_build -d [-k ] -# e.g., see section 4 of https://github.com/juliangehring/GMAP-GSNAP/blob/master/README -gmap_build \ - --dir "${location_for_output}" \ - --sort "none" \ - --db "sacCer3" \ - "${fasta}" - -#NOTE 1/3 Switched to using the whole-genome fasta because trying to run -#NOTE 2/3 gmap_build with individual fastas for the chromosomes was throwing -#NOTE 3/3 inscrutable (to me) errors - -#NOTE 1/3 Ran the script with '--cpus-per-task=2' in order to increase the -#NOTE 2/3 amount of memory to the job per the instructions here: -#NOTE 3/3 https://sciwiki.fredhutch.org/scicomputing/compute_jobs/#memory -``` - -Contents of `2436414.out.txt` -```txt -Opening file /home/kalavatt/genomes/sacCer3/sacCer3.fa - Processed short contigs (<1000000 nt): ... - Contig chrIV: concatenated at chromosome end: chrIV:1..1531933 (length = 1531933 nt) - Processed short contigs (<1000000 nt): ... - Contig chrVII: concatenated at chromosome end: chrVII:1..1090940 (length = 1090940 nt) - Processed short contigs (<1000000 nt): ... - Contig chrXII: concatenated at chromosome end: chrXII:1..1078177 (length = 1078177 nt) - Processed short contigs (<1000000 nt): .. - Contig chrXV: concatenated at chromosome end: chrXV:1..1091291 (length = 1091291 nt) - Processed short contigs (<1000000 nt): .. -============================================================ -Contig mapping information has been written to file /home/kalavatt/genomes/sacCer3/GMAP/sacCer3.coords. -You should look at this file, and edit it if necessary -If everything is okay, you should proceed by running - make gmapdb -============================================================ -No alternate scaffolds observed -``` -Do I need to do anything more? This should be everything, right? I think so... - -Let's clean things up by moving the contents of `/home/kalavatt/genomes/sacCer3/GMAP/sacCer3` to `/home/kalavatt/genomes/sacCer3/GMAP` -```bash -#!/bin/bash -#DONTRUN - -mv /home/kalavatt/genomes/sacCer3/GMAP/sacCer3/* /home/kalavatt/genomes/sacCer3/GMAP/ -rmdir sacCer3 - -# Also, go ahead and delete the individual chromosome fastas to save space (we -#+ didn't end up using them) -cd /home/kalavatt/genomes/sacCer3/chromosomes || echo "cd failed. Check on this." -rm *.{fa.gz,html,txt} -cd .. && rmdir chromosomes -pwd # /home/kalavatt/genomes/sacCer3 -``` - - -##### Try making a `.gff` from the `Trinity`-assembled transcriptome based on the script from Alison -```bash -#!/bin/bash -#DONTRUN - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=1 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -ml GMAP-GSNAP/2018-07-04-foss-2018b -ml SAMtools/1.16.1-GCC-11.2.0 - -d_Kris="${HOME}/tsukiyamalab/Kris" -d_proj="2022_transcriptome-construction/results" -d_exp="2022-1021/trinity_trin4s_5781_Q_IP_sorted.chrVII" -fasta="Trinity-GG.fasta" - -gmap \ - -d "sacCer3" \ - -D "${HOME}/genomes/sacCer3/GMAP" \ - -A "${d_Kris}/${d_proj}/${d_exp}/${fasta}" \ - --format="gff3_gene" "samse" \ - > "${d_Kris}/${d_proj}/${d_exp}/${fasta%.fasta}.GMAP.gff" -``` -Save the above contents to `submit-gmap_chrVII.sh` in `${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1021` - -`#DONE` Also, make a version of the script for the full genome, i.e., not just chrVII - - -##### Relevant links for the generation of a `.gff` from a `Trinity`-assembled transcriptome, etc. -- [`.fasta` to `.gff` with custom set of genes](https://www.biostars.org/p/248479/) -- [Generate `.gtf`/`.gff` file (coordinates) from a `.fasta` annotated file](https://www.biostars.org/p/398693/) -- [How to make `.gff` file based on assembled transcriptome and genome sequence?](https://www.biostars.org/p/426969/) -- [Running `gmap` tool via `gmapR` package?](https://support.bioconductor.org/p/74613/) -- [`juliangehring/GMAP-GSNAP` (public archive)](https://github.com/juliangehring/GMAP-GSNAP) - + [Main page for `GMAP/GSNAP`](http://research-pub.gene.com/gmap/) - + [Main `README` for `GMAP/GSNAP`](http://research-pub.gene.com/gmap/src/README) -- [Convert `Trinity` transcriptome assembly to `.gtf`/`.gff`](https://groups.google.com/g/trinityrnaseq-users/c/e5oKouOpvA0) -- [Gene Structure Annotation and Analysis Using `PASA` (`GitHub` wiki)](https://github.com/PASApipeline/PASApipeline/wiki) -- [Search results for "use gmap to make gff from fasta"](https://www.google.com/search?q=use+gmap+to+make+gff+from+fasta&ei=XO5WY5unIs_G0PEPvZ--yAk&ved=0ahUKEwibxe-00_n6AhVPIzQIHb2PD5kQ4dUDCBA&uact=5&oq=use+gmap+to+make+gff+from+fasta&gs_lcp=Cgdnd3Mtd2l6EAMyBwghEKABEApKBAhBGAFKBAhGGABQ9gRY9gRgowdoAXAAeACAAV2IAV2SAQExmAEAoAEBwAEB&sclient=gws-wiz) -
-
- - -## 2022-1024 - -### Going over Trinity assessments with Alison -- Can split gff3 by strand: `#TODO Look into this` (e.g., see [this link](https://www.biostars.org/p/215428/)) -- Per-chromosome fastq approach: `#TODO Look into this` - - We seem to do a "worse job when we do everything all at one," where here "everything" means running Trinity on the full genome versus running it with respect to one chromosome at a time - -*In the IGV instance that Alison had pulled up* -- Each line is one strand of one replicate: `#TODO Set up my readout like this too` -- Alison obtained these tracks after having run `bam_split_paired_end.sh` (currently found in `results/2022-1018/sh`) -- It should be possible to obtain a similar such file using `deepTools bamCoverage` with appropriate arguments, e.g., `--filterRNAstrand` (e.g., see [this link](https://deeptools.readthedocs.io/en/develop/content/tools/bamCoverage.html)): `#TODO Look into this` - -*Other ideas* -- Consider whether/how to filter data to remove transcripts below a certain value -- This kind of filtration should take place prior to running `Trinity`, right? - -*Goal/genereal approach* -- Set up `Trinity` to do as well as it can -- Make assignments - - Evaluate the assignments with respect to known annotations - - Evaluate the assignments with respect to *de novo* (`Trinity`) annotations - -*On snoRNAs versus snRNAs* -- snRNAs are associated with the spliceosome -- snoRNAs direct ribosome modifications - -*On the means to evaluate Trinity results by aligning reads back to the transcriptome assembly* (e.g., as described [here](https://bioinformaticsdotca.github.io/rnaseq_2017_tutorial6)) -- From the above link: "Generally, in a high quality assembly, you would expect to see at least ~70% \[overall alignment rate\] and at least ~70% of the reads to exist as proper pairs." -- Alison: "100% of reads captured would be too much" (with respect to mapping back to the *de novo* assembly) -- Alison: "Giving it less to chew on may be better" -- Alison expects that we will get much higher than 70% overall alignment rate because of the very high coverage of the data (remember that the yeast genome is very small) -- `#TODO Get these experiments up and running` - - -#### Five things to try out/work on -1. `#WAIT (...)` `deepTools bamCoverage` (see above) `#NOTE See results/2022-1101/readme.md` -2. `#TODO ( )` Ways/means to parameterize `Trinity`: Identify what paramter(s) to test, then set up experiments for the tests -3. `#TODO ( )` Test the genome-guided `.bam` approach to `Trinity` versus the `.fastq` approach (with the Jaccard index parameter): The thinking here is that, based on the documentation, it's not clear that the Jaccard index parameter is working with genome-guided bam approach -4. `#TODO ( )` Evaluate the percent overall alignment rate and percent of reads as proper pairs after aligning the reads to the assembled transcriptome (again, see [here](https://bioinformaticsdotca.github.io/rnaseq_2017_tutorial6)) -5. `#TODO ( )` Re-review the tutorial ([link](https://bioinformaticsdotca.github.io/rnaseq_2017_tutorial6)) to see if there are other general things we can evaluate; also, check for other tutorials and then check their contents -6. `#TODO ( )` Determine that running `Trinity` with respect to one chromosome at a time versus all chromosomes indeed makes a difference; for example, perhaps the spurious annotations observed in the telomeric region of chrVII in the 'full' approach come from transcripts associated with another chromosome; thus, they may show up when concatenating files from `Trinity` with respect to one chromosome at a time -
-
- - -### Meeting with Toshi about additional things to work on -...above and beyond the `Trinity` work (above) -In Alison's eventual paper, we're focused on antisense transcription, but we need to say something about mRNA transcription too - - -#### mRNA: *steady-state* versus *nascent* -We can make direct comparisons between steady-state G1 and steady-state Q (or log and Q), because we can perform spike-in normalization. We *can't* do the same for nascent G1 and nascent Q. Instead, we can only make within-sample comparisons, e.g., can only make comparisons within Q or can only make comparisons within G1, and can't make comparisons between Q and G1 - -`#TODO (...)` `#MAYBE` However, see if you can think of anything for some kind of normalization that would allow for comparisons between Q and G1... -- `#NOTE 2022-1103` Could consider doing `DESeq2::estimateSizeFactors(controlGene = ...)` and then `DESeq2` RLE normalization - + This could make the comparisons across the different conditions possible and valid, but does the RLE normalization lose otherwise important outliers? - -When labeling for 4tU in Q, there's nothing to compete for 4tU incorporation because Q cells are in water whereas G1 or log cells are in medium - - -#### Strategy hit upon by Toshi and Alison -Rank steady-state mRNA and nascent mRNA, then just compare ranks -Some corresponding logic: -- N: mRNA is in top 10%; SS: mRNA is in bottom 10%; can assume transcript is actively degraded -- N: mRNA is in bottom 10%; SS: mRNA is in top 10%; can assume transcript is stablized - - -#### Goals (per Toshi) -1. Did we do this (rank comparison method) in the right way? -2. Also, we want to have something to say about mRNA in Q... - - -#### Additional things (low priority) -- Compare protein abundances to mRNA abundances -- Teach Rachel basic ChIP-seq analyses, e.g., RPD3 -
-
diff --git a/results/2022-1021/submit-Trinity.sh b/results/2022-1021/submit-Trinity.sh deleted file mode 100644 index 59c0d36..0000000 --- a/results/2022-1021/submit-Trinity.sh +++ /dev/null @@ -1,30 +0,0 @@ -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -# submit-Trinity.sh -# KA - -module purge -module load Trinity/2.10.0-foss-2019b-Python-3.7.4 - -file="5781_Q_IP_sorted.chrVII.bam" - -Trinity \ - --genome_guided_bam "${file}" \ - --CPU "${SLURM_CPUS_ON_NODE}" \ - --max_memory 50G \ - --SS_lib_type FR \ - --normalize_max_read_cov 200 \ - --jaccard_clip \ - --genome_guided_max_intron 1002 \ - --min_kmer_cov 2 \ - --max_reads_per_graph 500000 \ - --min_glue 2 \ - --group_pairs_distance 700 \ - --min_contig_length 200 \ - --full_cleanup \ - --output "./trinity_trin4s_${file%.bam}" diff --git a/results/2022-1021/submit-gmap_build.sh b/results/2022-1021/submit-gmap_build.sh deleted file mode 100644 index 1569511..0000000 --- a/results/2022-1021/submit-gmap_build.sh +++ /dev/null @@ -1,23 +0,0 @@ -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=2 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -# submit-gmap_build.sh -# KA - -ml GMAP-GSNAP/2018-07-04-foss-2018b - -location_for_output="${HOME}/genomes/sacCer3/GMAP" -fasta="${HOME}/genomes/sacCer3/sacCer3.fa" - -# gmap_build -d [-k ] -# e.g., see section 4 of https://github.com/juliangehring/GMAP-GSNAP/blob/master/README -gmap_build \ - --dir "${location_for_output}" \ - --sort "none" \ - --db "sacCer3" \ - "${fasta}" - diff --git a/results/2022-1021/submit-gmap_chrVII.sh b/results/2022-1021/submit-gmap_chrVII.sh deleted file mode 100644 index 824d961..0000000 --- a/results/2022-1021/submit-gmap_chrVII.sh +++ /dev/null @@ -1,22 +0,0 @@ -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=1 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -ml GMAP-GSNAP/2018-07-04-foss-2018b -ml SAMtools/1.16.1-GCC-11.2.0 - -d_Kris="${HOME}/tsukiyamalab/Kris" -d_proj="2022_transcriptome-construction/results" -d_exp="2022-1021/trinity_trin4s_5781_Q_IP_sorted.chrVII" -fasta="Trinity-GG.fasta" - -gmap \ - -d "sacCer3" \ - -D "${HOME}/genomes/sacCer3/GMAP" \ - -A "${d_Kris}/${d_proj}/${d_exp}/${fasta}" \ - --format="gff3_gene" "samse" \ - > "${d_Kris}/${d_proj}/${d_exp}/${fasta%.fasta}.GMAP.gff" - diff --git a/results/2022-1021/submit-gmap_full.sh b/results/2022-1021/submit-gmap_full.sh deleted file mode 100644 index ab55f48..0000000 --- a/results/2022-1021/submit-gmap_full.sh +++ /dev/null @@ -1,22 +0,0 @@ -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=1 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -ml GMAP-GSNAP/2018-07-04-foss-2018b -ml SAMtools/1.16.1-GCC-11.2.0 - -d_Kris="${HOME}/tsukiyamalab/Kris" -d_proj="2022_transcriptome-construction/results" -d_exp="2022-1021/trinity_trin4s_5781_Q_IP_sorted" -fasta="Trinity-GG.fasta" - -gmap \ - -d "sacCer3" \ - -D "${HOME}/genomes/sacCer3/GMAP" \ - -A "${d_Kris}/${d_proj}/${d_exp}/${fasta}" \ - --format="gff3_gene" "samse" \ - > "${d_Kris}/${d_proj}/${d_exp}/${fasta%.fasta}.GMAP.gff" - diff --git a/results/2022-1025/analysis_sense_antisense.KA.Rmd b/results/2022-1025/analysis_sense_antisense.KA.Rmd deleted file mode 100644 index 1b2a873..0000000 --- a/results/2022-1025/analysis_sense_antisense.KA.Rmd +++ /dev/null @@ -1,1197 +0,0 @@ ---- -title: "R Notebook" -output: html_notebook ---- - ---- -title: "R Notebook" -output: html_notebook ---- -# Clear environment -```{r} -rm(list = ls()) -``` - -# Load required packages -## Packages have been installed with mamba into a specific, special conda environment set up to run RStudio sessions -```{r} -library("DESeq2") -library("tidyverse") -library("EnhancedVolcano") -library("ggpubr") -library("scales") -library("grid") -``` - -# Set up variables for paths -```{r} -p_repo <- "~/projects-etc/2022_transcriptome-construction" -p_res <- "results/2022-1025" -p_txt <- "Alison/txt" - -p_full <- paste(p_repo, p_res, p_txt, sep = "/") -dir.exists(p_full) - -p_Alison <- gsub('(.*)/\\w+', '\\1', p_full) -dir.exists(p_Alison) - -p_save <- paste(p_repo, p_res, sep = "/") -``` - -# Read in count and metadata for mRNA -```{r} -countData_Nascent <- read.delim( - paste(p_full, "mRNA_Nascent_Nab3.txt", sep = "/"), - header = TRUE -) -metadata_Nascent <- read.delim( - paste(p_full, "deletionmeta.txt", sep = "/"), - header = TRUE -) -``` - - -## Make DESEQDataSet Object -```{r} -dds_n <- DESeq2::DESeqDataSetFromMatrix( - countData=countData_Nascent, - colData=metadata_Nascent, - design= ~ dex, - tidy = TRUE -) -dds_n -# class: DESeqDataSet -# dim: 6600 5 -# metadata(1): version -# assays(1): counts -# rownames(6600): Q0010 Q0017 ... YPR204C-A YPR204W -# rowData names(0): -# colnames(5): Q_6125_N Q_7718_N Q_6126_N Q_7716_N Q_7714_N -# colData names(2): id dex -``` - -## Set size factors (from spike in) -```{r} -BiocGenerics::sizeFactors(dds_n) <- c(1, 1.188, 1, 2.097, 1.662) -``` - -`#QUESTION` Is this where we want the estimated size factors to be input? -`#QUESTION` Is the current means of calculating them appropriate for the DESeq2 model? - -## Run DESEQ Function -```{r} -dds_n <- DESeq2::DESeq(dds_n) -``` - -## Look at results table -```{r} -res_n <- DESeq2::results(dds_n) -DESeq2::results(dds_n, tidy = TRUE) %>% head() -``` - - -## Summary of differential gene expression -```{r} -summary(res_n) -# out of 6488 with nonzero total read count -# adjusted p-value < 0.1 -# LFC > 0 (up) : 2111, 33% -# LFC < 0 (down) : 872, 13% -# outliers [1] : 1, 0.015% -# low counts [2] : 0, 0% -# (mean count < 0) -# [1] see 'cooksCutoff' argument of ?results -# [2] see 'independentFiltering' argument of ?results -``` - - -### Sort Summary List by adjusted p-value -```{r} -res_n <- res_n[order(res_n$padj), ] -head(res_n) -``` - -### Make volcano -```{r} -EnhancedVolcano::EnhancedVolcano( - res_n, - lab = NA, - x = 'log2FoldChange', - y = 'pvalue' -) -``` - -### Make volcano and save png -```{r} -dir.exists(paste(p_save, "png", sep = "/")) || - dir.create(paste(p_save, "png", sep = "/")) - -png <- EnhancedVolcano::EnhancedVolcano( - res_n, - lab = NA, - x = 'log2FoldChange', - y = 'padj', - xlab = bquote(~Log[2]~ 'fold change'), - title = 'Sense Nascent Transcription', - gridlines.major = FALSE, - gridlines.minor = FALSE, - pCutoff = 0.05, - FCcutoff = 2 -) - -timestampedFilename <- paste0( - paste(p_save, "png", sep = "/"), "/", - "sense_differential_nascent_expression", ".", - format(Sys.time(), format = "%F_%H%M%S"), ".png" -) -ggplot2::ggsave(timestampedFilename, plot = png) -``` - -### Write DESeq2 to matrix -```{r} -dir.exists(paste(p_save, "txt", sep = "/")) || - dir.create(paste(p_save, "txt", sep = "/")) - -p_txt <- paste(p_save, "txt", sep = "/") -write.table( - tibble::rownames_to_column(as.data.frame(res_n), "gene"), - file = paste(p_txt, "nascent_mRNA_diff_res.txt", sep = "/"), - sep = "\t", - row.names = FALSE -) - -write.table( - tibble::rownames_to_column( - as.data.frame(res_n[order(res_n$padj), ]), "gene" - ), - file = paste(p_txt, "nascent_mRNA_diff_res_ordered.txt", sep = "/"), - sep = "\t", - row.names = FALSE -) -``` -`#QUESTION` I then go in excel and name the gene category "name" Why does R not name this column? I wish I knew - -`#ANSWER` `write.table` is printing the row names which, by default, don't have column names; the row names become the first column for all lines after the initial one; see the way I addressed this above - -### Read ordered DESeq2 matrix back in -`#COMMENT` There has gotta be a better way to do this - -`#ANSWER` There is: see below -```{r} -res1_n <- tibble::rownames_to_column( - as.data.frame(res_n[order(res_n$padj), ]), "gene" -) -``` - -#filter results -```{r} -res1Nab3_up <- dplyr::filter(res1_n, log2FoldChange > 2, padj < 0.05) -res1Nab3_down <- dplyr::filter(res1_n, log2FoldChange < -2, padj < 0.05) -``` - -#write filtered results for go terms -```{r} -write.table( - res1Nab3_up, - file = paste(p_txt, "res1Nab3_up_SENSE.txt", sep = "/"), - sep = "\t", - row.names = FALSE -) - -write.table( - res1Nab3_down, - file = paste(p_txt, "res1Nab3_down_SENSE.txt", sep = "/"), - sep = "\t", - row.names = FALSE -) -``` - -#filter results -```{r} -res1Nab3_up_1p5 <- filter(res1_n, log2FoldChange > 1.5, padj < 0.05) -res1Nab3_down_1p5 <- filter(res1_n, log2FoldChange < -1.5, padj < 0.05) -``` - - -#read in AS count and metadata -```{r} -AS_countData_Nascent <- read.delim( - paste(p_full, "AS_mRNA_Nascent_Nab3.txt", sep = "/"), - header = TRUE -) -AS_metadata_Nascent <- read.delim( - paste(p_full, "deletionmeta_AS.txt", sep = "/"), - header = TRUE -) -``` - - -## Make DESEQDataSet Object AS -```{r} -dds_n_as<- DESeq2::DESeqDataSetFromMatrix( - countData = AS_countData_Nascent, - colData = AS_metadata_Nascent, - design= ~ dex, - tidy = TRUE -) -dds_n_as -``` - -#size factors -#from spike in -```{r} -BiocGenerics::sizeFactors(dds_n_as) <- c(1, 1.188, 1, 2.097, 1.662) -``` - - -## Run DESEQ Function -```{r} -dds_n_as <- DESeq2::DESeq(dds_n_as) -``` - - -## Look at results table -```{r} -res_n_as<- DESeq2::results(dds_n_as) -DESeq2::results(dds_n_as, tidy=TRUE) %>% head() -``` - - -## Summary of differential gene expression -```{r} -summary(res_n_as) -``` - - -##Sort Summary List by p-value -```{r} -res_n_as <- res_n_as[order(res_n_as$padj), ] -head(res_n_as) -``` - -#make volcano plot - saves png -```{r} -png <- EnhancedVolcano::EnhancedVolcano( - res_n_as, - lab = NA, - x = 'log2FoldChange', - y = 'padj', - xlab = bquote(~Log[2]~ 'fold change'), - title = 'Antisense Nascent Transcription', - gridlines.major = FALSE, - gridlines.minor = FALSE, - pCutoff = 0.05, - FCcutoff = 2 -) - -timestampedFilename <- paste0( - paste(p_save, "png", sep = "/"), "/", - "AS_differential_nascent_expression", ".", - format(Sys.time(), format = "%F_%H%M%S"), ".png" -) -ggplot2::ggsave(timestampedFilename, plot = png) -``` - -#write results file AS -```{r} -write.table( - tibble::rownames_to_column(as.data.frame(res_n_as), "gene"), - file = paste(p_txt, "AS_Nascent_mRNA_diff_res_sf.txt", sep = "/"), - sep = "\t", - row.names = FALSE -) - -write.table( - tibble::rownames_to_column( - as.data.frame(res_n_as[order(res_n_as$padj), ]), "gene" - ), - file = paste(p_txt, "AS_Nascent_mRNA_diff_res_sf_ordered.txt", sep = "/"), - sep = "\t", - row.names = FALSE -) -``` - -```{r} -res1_n_as <- tibble::rownames_to_column( - as.data.frame(res_n_as[order(res_n_as$padj), ]), "gene" -) -``` - -#filter AS results -```{r} -AS_res1Nab3_up <- dplyr::filter(res1_n_as, log2FoldChange > 2, padj < 0.05) -AS_res1Nab3_down <- dplyr::filter(res1_n_as, log2FoldChange < -2, padj < 0.05) -``` - -#write AS to file -```{r} -write.table( - AS_res1Nab3_up, - file = paste(p_txt, "AS_res1Nab3_up.txt", sep = "/"), - sep = "\t", - row.names = FALSE -) - -write.table( - AS_res1Nab3_down, - file = paste(p_txt, "AS_res1Nab3_down.txt", sep = "/"), - sep = "\t", - row.names = FALSE -) -``` - - -#filter AS results different -```{r} -AS_res1Nab3_up_1p5 <- dplyr::filter(res1_n_as, log2FoldChange > 1.5, padj < 0.05) -AS_res1Nab3_down_1p5 <- dplyr::filter(res1_n_as, log2FoldChange < -1.5, padj < 0.05) -``` - - -#overlap between sense and AS by name -```{r} -Nas_AS_up <- dplyr::inner_join( - AS_res1Nab3_up, - res1Nab3_up, - by = "gene" -) -Nas_AS_down <- dplyr::inner_join( - AS_res1Nab3_down, - res1Nab3_down, - by = "gene" -) -Nas_AS_down_up <- dplyr::inner_join( - AS_res1Nab3_down, - res1Nab3_up, - by = "gene" -) -Nas_AS_up_down <- dplyr::inner_join( - AS_res1Nab3_up, - res1Nab3_down, - by = "gene" -) -``` - -#overlap between sense and AS by name - different gates -```{r} -Nas_1.5_AS_up <- dplyr::inner_join( - AS_res1Nab3_up_1p5, - res1Nab3_up_1p5, - by = "gene" -) -Nas_1.5_AS_down <- dplyr::inner_join( - AS_res1Nab3_down_1p5, - res1Nab3_down_1p5, - by = "gene" -) -Nas_1.5_AS_down_up <- dplyr::inner_join( - AS_res1Nab3_down_1p5, - res1Nab3_up_1p5, - by = "gene" -) -Nas_1.5_AS_up_down <- dplyr::inner_join( - AS_res1Nab3_up_1p5, - res1Nab3_down_1p5, - by = "gene" -) -``` - -#read in AS of Nab3 TPM - from replicate analysis rmd -```{r} -AS_TPM <- read.delim( - paste(p_full, "AS_TPM.txt", sep = "/"), - header = TRUE -) -``` - -#calc average TPM -```{r} - -AS_TPM <- AS_TPM %>% - dplyr::rowwise() %>% - dplyr::mutate( - Avg_single_Tag_AS_TPM = mean(c(Q_7718_N_AS, Q_7718_N_AS), na.rm = T) - ) -AS_TPM <- AS_TPM %>% - dplyr::rowwise() %>% - dplyr::mutate( - Avg_parental_AS_TPM = mean(c(Q_6125_N_AS, Q_6126_N_AS), na.rm = T) - ) - -``` - -#extract only relevent columns -```{r} -AS_TPM_Clean <- AS_TPM %>% - dplyr::select(c("name", "Avg_single_Tag_AS_TPM", "Avg_parental_AS_TPM")) - -# Change the "name" column to "gene" column -colnames(AS_TPM_Clean)[colnames(AS_TPM_Clean) == "name"] <- "gene" -``` - -#access quantiles -```{r} -quantile(AS_TPM_Clean$Avg_single_Tag_AS_TPM) -quantile(AS_TPM_Clean$Avg_parental_AS_TPM) -``` - -#more fine grain -```{r} -quantile(AS_TPM_Clean$Avg_single_Tag_AS_TPM, probs = c(0.8,0.85, .9, .95)) -quantile(AS_TPM_Clean$Avg_parental_AS_TPM, probs = c(0.8,0.85, .9, .95)) -``` - -#highest 20% of AS by absolute level -```{r} -Cuttoff_TPM_AS <- dplyr::filter(AS_TPM_Clean, Avg_single_Tag_AS_TPM > 14) -``` - -#now were doing the intersection of AS of high level and differential expression -```{r} -TPM_Nas_AS_up <- dplyr::inner_join(AS_res1Nab3_up, Cuttoff_TPM_AS, by = "gene") -nrow(TPM_Nas_AS_up) -``` -#731 AS up - -#overlap between TPM_Nas_AS_up and res1Nab3_down_1p5 (one way to gate functional AS) -```{r} -TPM_AS_up_Sense_down <- dplyr::inner_join( - TPM_Nas_AS_up, - res1Nab3_down_1p5, - by = "gene" -) -nrow(TPM_AS_up_Sense_down) -nrow(res1Nab3_down_1p5) -``` - -#overlap between TPM_Nas_AS_up and res1Nab3_down (different way to gate functional AS) -```{r} -TPM_AS_up_Sense_down_2 <- dplyr::inner_join( - TPM_Nas_AS_up, - res1Nab3_down, - by = "gene" -) -nrow(TPM_AS_up_Sense_down_2) -nrow(res1Nab3_down) -``` - -#rename AS table names so I can compare them with sense values - they will then have different names and labels -```{r} -colnames(res1_n_as) <- c( - "gene", "AS_baseMean", "AS_log2FoldChange", "AS_lfcSE", - "AS_stat", "AS_pvalue", "AS_padj" -) -``` - -#one giant matrix of both sense and Antisense -```{r} -Combinded_RES <- merge(res1_n, res1_n_as, by = "gene") -``` - -#graph logfoldchange of sense and Antisense -#"pairwise.complete.obs" must be used to throw out incomplete values - I know some authors will change every zero to 1 to fix this -```{r} -grob1 <- grid::grobTree( - grid::textGrob( - paste( - "Pearson Correlation: ", - round(cor( - Combinded_RES$log2FoldChange, - Combinded_RES$AS_log2FoldChange, - use = "pairwise.complete.obs"), - 4) - ), - x = 0.5, - y = 0.97, - hjust = 0, - gp = gpar(col = 'blue', fontsize = 11, fontface = "bold") - ) -) - -ggplot2::ggplot(data = Combinded_RES) + - ggplot2::geom_vline(xintercept = 0, alpha = .5) + - ggplot2::geom_hline(yintercept = 0, alpha = .5) + - ggplot2::geom_point( - data = Combinded_RES, - mapping = aes(y = log2FoldChange, x = AS_log2FoldChange), - alpha = 4/10, - size = 1, - color = 'black' - ) + - ggplot2::geom_smooth( - aes(y = log2FoldChange, x = AS_log2FoldChange), - method = lm, - se = TRUE, - color = 'forestgreen' - ) + - ggplot2::theme_bw() + - ggplot2::annotation_custom(grob1) + - ggplot2::geom_smooth( - data = Combinded_RES, - aes(y = log2FoldChange, x = AS_log2FoldChange), - method = lm, - se = TRUE, - color = 'blue' - ) -``` - - -#check colnames of TPM_Nas_AS_up -```{r} -colnames(TPM_Nas_AS_up) -``` - -#rename AS table names so I can compare them with sense values - they will then have different names and labels -```{r} -colnames(TPM_Nas_AS_up) <- c( - "gene", "AS_baseMean", "AS_log2FoldChange", "AS_lfcSE", "AS_stat", - "AS_pvalue", "AS_padj", "Avg_single_Tag_AS_TPM", "Avg_parental_AS_TPM" -) -``` - -#add sense expression info onto highest AS table so those points can be graphed seperately -```{r} -High_up_AS <- merge(TPM_Nas_AS_up, res1_n, by = "gene") -``` - -#scatterplot now with high AS highlighted in red -```{r} -grob2 <- grid::grobTree( - grid::textGrob( - paste( - "Pearson Correlation Over Expressed AS: ", - round( - cor( - High_up_AS$log2FoldChange, - High_up_AS$AS_log2FoldChange, - use = "pairwise.complete.obs"), - 4 - ) - ), - x= 0.3, - y = 0.93, - hjust = 0, - gp = gpar(col = 'red', fontsize = 11, fontface = "bold") - ) -) - -ggplot2::ggplot(data = Combinded_RES) + - ggplot2::geom_vline(xintercept = 0, alpha = .5) + - ggplot2::geom_hline(yintercept = 0, alpha = .5) + - ggplot2::geom_point( - data = Combinded_RES, - mapping = aes(y = log2FoldChange, x = AS_log2FoldChange), - alpha = 4/10, - size = 1, - color = 'black' - ) + - ggplot2::geom_smooth( - aes(y = log2FoldChange, x = AS_log2FoldChange), - method = lm, - se = TRUE, - color = 'forestgreen' - ) + - ggplot2::theme_bw() + - ggplot2::geom_point( - data = High_up_AS, - aes(y = log2FoldChange,x=AS_log2FoldChange), - color = "red", - size =1, - alpha = 4/10 - )+ - ggplot2::annotation_custom(grob1) + - ggplot2::annotation_custom(grob2) + - ggplot2::geom_smooth( - data = Combinded_RES, - aes(y = log2FoldChange, x = AS_log2FoldChange), - method = lm, - se = TRUE, - color = 'blue' - ) + - ggplot2::geom_smooth( - data = High_up_AS, - aes(y = log2FoldChange, x = AS_log2FoldChange), - method = lm, - se = TRUE, - color = "red" - ) -``` - - -## now it is time to do grouped analysis :) -#Make a new variable that's the same thing (need this to remove genes, so no gene is asigned to more than one group) -```{r} -DeSeq2_Sense_Results <- res1_n -``` - -#now we are binning genes by group of mRNA expression -#group 1 up genes -#group 5 down genes -```{r} -grp1_DeSeq2_Sense_Results <- dplyr::filter(res1_n, log2FoldChange > 2, padj < 0.05) -grp5_DeSeq2_Sense_Results <- dplyr::filter(res1_n, log2FoldChange < -2, padj < 0.05) -``` - -#group 3 "neutral" -```{r} -grp3_DeSeq2_Sense_Results <- dplyr::filter(res1_n, log2FoldChange < 1 , log2FoldChange >-1 ) -``` - -#remove group 1 genes from DeSeq2_Sense_Results -```{r} -DeSeq2_Sense_Results <- DeSeq2_Sense_Results[ - !(DeSeq2_Sense_Results$gene %in% grp1_DeSeq2_Sense_Results$gene), -] -nrow(DeSeq2_Sense_Results) + nrow(grp1_DeSeq2_Sense_Results) -``` - -#remove group 5 genes from DeSeq2_Sense_Results -```{r} -DeSeq2_Sense_Results <- DeSeq2_Sense_Results[ - !(DeSeq2_Sense_Results$gene %in% grp5_DeSeq2_Sense_Results$gene), -] - -nrow(DeSeq2_Sense_Results) + -nrow(grp1_DeSeq2_Sense_Results) + -nrow(grp5_DeSeq2_Sense_Results) - -nrow(DeSeq2_Sense_Results) - -nrow(grp1_DeSeq2_Sense_Results) + nrow(grp5_DeSeq2_Sense_Results) -``` - -#remove group 3 genes from DeSeq2_Sense_Results -```{r} -DeSeq2_Sense_Results <- DeSeq2_Sense_Results[ - !(DeSeq2_Sense_Results$gene %in% grp3_DeSeq2_Sense_Results$gene), -] -nrow(DeSeq2_Sense_Results) -nrow(grp3_DeSeq2_Sense_Results) -``` - -#sanity check count rows -```{r} -nrow(grp1_DeSeq2_Sense_Results) -nrow(grp5_DeSeq2_Sense_Results) -``` - -#now from not group 1,3,5 - split into group 2 and 4 -```{r} -grp2_DeSeq2_Sense_Results <- filter(DeSeq2_Sense_Results, log2FoldChange >=1) -grp4_DeSeq2_Sense_Results <- filter(DeSeq2_Sense_Results, log2FoldChange <= -1 ) -``` - -#sanity check count rows -```{r} -nrow(grp1_DeSeq2_Sense_Results) + -nrow(grp5_DeSeq2_Sense_Results) + -nrow(grp3_DeSeq2_Sense_Results) + -nrow(grp2_DeSeq2_Sense_Results) + -nrow(grp4_DeSeq2_Sense_Results) -``` - -#sanity check count rows -```{r} -DeSeq2_Sense_Results <- DeSeq2_Sense_Results[ - !(DeSeq2_Sense_Results$gene %in% grp5_DeSeq2_Sense_Results$gene), -] - -nrow(DeSeq2_Sense_Results) + -nrow(grp1_DeSeq2_Sense_Results) + -nrow(grp5_DeSeq2_Sense_Results) - -nrow(DeSeq2_Sense_Results) - -nrow(grp1_DeSeq2_Sense_Results) + nrow(grp5_DeSeq2_Sense_Results) -``` - -#sanity check count rows -#only thing left in "DeSeq2_Sense_Results" is NA results -```{r} -DeSeq2_Sense_Results <- DeSeq2_Sense_Results[ - !(DeSeq2_Sense_Results$gene %in% grp2_DeSeq2_Sense_Results$gene), -] -DeSeq2_Sense_Results <- DeSeq2_Sense_Results[ - !(DeSeq2_Sense_Results$gene %in% grp4_DeSeq2_Sense_Results$gene), -] -nrow(DeSeq2_Sense_Results) -``` - -#now we have groups by sense expression change -#now make table to integrate AS expression info -```{r} -group1 <- merge(grp1_DeSeq2_Sense_Results, res1_n_as, by = "gene") -group2 <- merge(grp2_DeSeq2_Sense_Results, res1_n_as, by = "gene") -group3 <- merge(grp3_DeSeq2_Sense_Results, res1_n_as, by = "gene") -group4 <- merge(grp4_DeSeq2_Sense_Results, res1_n_as, by = "gene") -group5 <- merge(grp5_DeSeq2_Sense_Results, res1_n_as, by = "gene") -``` - -#what happens next is how i make violin plots. -#I figured this out like a year ago and have copy pasted this code a bunch. -#this is the bins -```{r} -mRNA1 <- data.frame(AS_log2FoldChange = group1$AS_log2FoldChange) -mRNA2 <- data.frame(AS_log2FoldChange = group2$AS_log2FoldChange) -mRNA3 <- data.frame(AS_log2FoldChange = group3$AS_log2FoldChange) -mRNA4 <- data.frame(AS_log2FoldChange = group4$AS_log2FoldChange) -mRNA5 <- data.frame(AS_log2FoldChange = group5$AS_log2FoldChange) -``` - -#now the little seperate bins are glued together -```{r} -# Now, combine your two dataframes into one. -# First make a new column in each that will be -# a variable to identify where they came from later. -mRNA1$expression <- 'Over_Expressed' -mRNA2$expression <- 'Over_Expressed_not_sig' -mRNA3$expression <- 'Neutral' -mRNA4$expression <- 'Under_Expressed_not_sig' -mRNA5$expression <- 'Under_Expressed' - -# and combine into your new data frame vegLengths -dataframe1 <- rbind(mRNA2, mRNA3, mRNA4, mRNA5, mRNA1) -``` - -#now we we make a violin plot -```{r} -p <- ggplot2::ggplot( - dataframe1, - aes(factor(expression), fill = expression, AS_log2FoldChange) -) + - ggplot2::geom_violin(draw_quantiles = c(0.25, 0.5, 0.75)) + - ggplot2::scale_fill_manual( - values = c("#9F9BA2", "limegreen", "#44A043", "#D1B3EC", "#825CA6") - ) + - ggplot2::theme_minimal() -p -``` - -#now we we make a violin plot with p values -```{r} -my_comparisons <- list( - c('Neutral', 'Over_Expressed'), - c('Neutral', 'Under_Expressed'), - c('Under_Expressed', 'Over_Expressed') -) - -p <- ggplot2::ggplot( - dataframe1, - aes(factor(expression), fill = expression, AS_log2FoldChange) -) + - ggplot2::geom_violin(draw_quantiles = c(0.25, 0.5, 0.75)) + - ggplot2::scale_fill_manual( - values = c("#9F9BA2", "limegreen", "#44A043", "#D1B3EC", "#825CA6") - ) + - ggplot2::theme_minimal() + - ggpubr::stat_compare_means(comparisons = my_comparisons) -p -``` - -#now were going to do the same thing -#the bins stay the same -#but in the bins were are putting AS expression level -```{r} -colnames(AS_TPM)[colnames(AS_TPM) == "name"] <- "gene" - -TPM_group1 <- merge(grp1_DeSeq2_Sense_Results, AS_TPM, by = "gene") -TPM_group2 <- merge(grp2_DeSeq2_Sense_Results, AS_TPM, by = "gene") -TPM_group3 <- merge(grp3_DeSeq2_Sense_Results, AS_TPM, by = "gene") -TPM_group4 <- merge(grp4_DeSeq2_Sense_Results, AS_TPM, by = "gene") -TPM_group5 <- merge(grp5_DeSeq2_Sense_Results, AS_TPM, by = "gene") -``` - -```{r} -colnames(TPM_group1) -``` - -#making data frames to put into violin plot -```{r} -TPM_mRNA1 <- data.frame(AS_Level_Depletion = TPM_group1$Avg_single_Tag_AS_TPM) -TPM_mRNA2 <- data.frame(AS_Level_Depletion = TPM_group2$Avg_single_Tag_AS_TPM) -TPM_mRNA3 <- data.frame(AS_Level_Depletion = TPM_group3$Avg_single_Tag_AS_TPM) -TPM_mRNA4 <- data.frame(AS_Level_Depletion = TPM_group4$Avg_single_Tag_AS_TPM) -TPM_mRNA5 <- data.frame(AS_Level_Depletion = TPM_group5$Avg_single_Tag_AS_TPM) -``` - -#glueing the data frames into one -```{r} -# Now, combine your two dataframes into one. -# First make a new column in each that will be -# a variable to identify where they came from later. -TPM_mRNA1$expression <- 'Over_Expressed' -TPM_mRNA2$expression <- 'Over_Expressed_not_sig' -TPM_mRNA3$expression <- 'Neutral' -TPM_mRNA4$expression <- 'Under_Expressed_not_sig' -TPM_mRNA5$expression <- 'Under_Expressed' - -# and combine into your new data frame vegLengths -dataframe2 <- rbind(TPM_mRNA2, TPM_mRNA3, TPM_mRNA4, TPM_mRNA5, TPM_mRNA1) -``` - -#make violin plot -```{r} -my_comparisons <- list( - c('Neutral', 'Over_Expressed'), - c('Neutral', 'Under_Expressed'), - c('Under_Expressed', 'Over_Expressed') -) - -p2 <- ggplot2::ggplot( - dataframe2, - aes(factor(expression), fill = expression, AS_Level_Depletion) -) + ggplot2::geom_violin(draw_quantiles = c(0.25, 0.5, 0.75)) + - ggplot2::scale_fill_manual( - values = c("#9F9BA2", "limegreen", "#44A043", "#D1B3EC", "#825CA6") - ) + - ggplot2::theme_minimal() + - ggplot2::ylim(0, 100) -p2 -``` - - -#make violin plot but now with p values -```{r} -my_comparisons <- list( - c('Neutral', 'Over_Expressed'), - c('Neutral', 'Under_Expressed'), - c('Under_Expressed', 'Over_Expressed') -) - -p2 <- ggplot2::ggplot( - dataframe2, - aes(factor(expression), fill = expression, AS_Level_Depletion) -) + - ggplot2::geom_violin(draw_quantiles = c(0.25, 0.5, 0.75)) + - ggplot2::scale_fill_manual( - values = c("#9F9BA2", "limegreen", "#44A043", "#D1B3EC", "#825CA6") - ) + - ggplot2::theme_minimal() + - ggpubr::stat_compare_means(comparisons = my_comparisons, method = "t.test") -p2 -``` - - -#now I am gating by fold change >2 instead of 4 -```{r} -ONE_AS_res1Nab3_up <- dplyr::filter( - res1_n_as, - AS_log2FoldChange > 1, - AS_padj < 0.05 -) -ONE_AS_res1Nab3_down <- dplyr::filter( - res1_n_as, - AS_log2FoldChange < -1, - AS_padj < 0.05 -) -``` - -#comparing between fold change >2 instead of 4 -```{r} -ONE_TPM_Nas_AS_up <- dplyr::inner_join( - ONE_AS_res1Nab3_up, Cuttoff_TPM_AS, by = "gene" -) -nrow(TPM_Nas_AS_up) -nrow(ONE_TPM_Nas_AS_up) -``` - -#New Sense filters -```{r} -ONE_res1Nab3_up <- dplyr::filter(res1_n, log2FoldChange > 1, padj < 0.05) -ONE_res1Nab3_down <- dplyr::filter(res1_n, log2FoldChange < -1, padj < 0.05) -``` - - -#new functional RNA catagory -```{r} -ONE_UpAS_DownMRNA <- inner_join(ONE_TPM_Nas_AS_up, ONE_res1Nab3_down, by = "gene") -nrow(ONE_UpAS_DownMRNA) -``` - -#write names only to file -#thanks for writing this Kris -```{r} -fileConn <- paste(p_txt, "functional_AS_test_list.txt", sep = "/") -writeLines(as.character(ONE_UpAS_DownMRNA$gene), fileConn) -close(fileConn) -``` - -#calc overlaps -```{r} -ONE_UpAS_UpMRNA <- dplyr::inner_join( - ONE_TPM_Nas_AS_up, ONE_res1Nab3_up, by = "gene" -) -nrow(ONE_UpAS_UpMRNA) -nrow(ONE_TPM_Nas_AS_up) -nrow(ONE_res1Nab3_up) -``` - - -`#HERE` -##now I am going to compare to 5781 and 2 WT Q and G1 -#so I gotta read that data in -```{r} -WT_AS_diff_expression <- read.delim( - paste(p_full, "res_order_AS_Diff_expression.txt", sep = "/"), - header = TRUE -) -WT_TPM <- read.delim( - paste(p_full, "WT_Q_G1_TPM.txt", sep = "/"), - header = TRUE -) -``` - -#filtered by expression -```{r} -WT_AS_UP_Q <- dplyr::filter( - WT_AS_diff_expression, - log2FoldChange > 1, - padj < 0.05 -) -``` - -#calc what high AS is -```{r} -quantile(WT_TPM$Avg_Q_IP_ANTISense, probs = c(0.5, 0.75, 0.8,0.85, 0.9, 0.95)) -``` -#once again I am gating at 80% -```{r} -WT_high_level_AS <- dplyr::filter(WT_TPM, Avg_Q_IP_ANTISense > 14) -``` - -#check colnames -```{r} -colnames(WT_high_level_AS) -``` - - -#merge high level and overexpressed -```{r} -colnames(WT_AS_UP_Q)[colnames(WT_AS_UP_Q) == "name"] <- "gene" -WT_best_AS <- merge(WT_AS_UP_Q, WT_high_level_AS, by.x = "gene", by.y = "ensgene") -``` - -#now compare WT to Nab3 experiment -```{r} -AS_tested <- merge(WT_best_AS, High_up_AS, by = "gene") -nrow(AS_tested) -nrow(WT_best_AS) -nrow(High_up_AS) -``` - -#of the 180 above - how many are functional? -```{r} -Functional_WT <- merge(ONE_UpAS_DownMRNA, AS_tested, by = "gene") -nrow(Functional_WT) -nrow(ONE_UpAS_DownMRNA) -nrow(AS_tested) - -``` - -#making a list of gene names from Nab3 data so I can highlight those genes in WT data -```{r} -ONE_UpAS_DownMRNA_list <- ONE_UpAS_DownMRNA %>% dplyr::select(c("gene")) -ONE_TPM_Nas_AS_up_list <- ONE_TPM_Nas_AS_up %>% dplyr::select(c("gene")) - -nrow(ONE_UpAS_DownMRNA_list) -nrow(ONE_TPM_Nas_AS_up_list) -``` -#all genes in WT - AS tpm and differential expression -```{r} -colnames(WT_AS_diff_expression)[ - colnames(WT_AS_diff_expression) == "name" -] <- "gene" -WT_data <- merge(WT_TPM, WT_AS_diff_expression, by.x = "ensgene", by.y = "gene") -``` - -#graph it and it is a blob -```{r} -grob7 <- grid::grobTree( - grid::textGrob( - paste( - "Pearson Correlation : ", - round( - cor( - WT_data$Avg_Q_IP_ANTISense, - WT_data$log2FoldChange, - use = "pairwise.complete.obs" - ), - 4 - ) - ), - x = 0.5, - y = 0.97, - hjust = 0, - gp = gpar(col = "black", fontsize = 11, fontface = "bold") - ) -) - - -ggplot2::ggplot(data = WT_data) + - ggplot2::geom_point( - mapping = aes(y = log2FoldChange, x= Avg_Q_IP_ANTISense), - alpha = 2/10, - size = 1 - ) + - ggplot2::scale_x_continuous( - trans = log2_trans(), - breaks = trans_breaks("log2", function(x) 2^x), - labels = trans_format("log2", math_format(2^.x)) - ) + - ggplot2::theme_bw()+ - ggplot2::annotation_custom(grob7)+ - ggplot2::geom_smooth( - data = WT_data, - aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense), - method = lm, - se = TRUE, - color = 'black' - ) -``` - - - -#map Nab3 genes to WT data -```{r} -WT_data_Nab3_Sensitive_genes <- merge( - WT_data, ONE_TPM_Nas_AS_up_list, by.x = "ensgene", by.y = "gene" -) - -WT_data_functional_AS <- merge( - WT_data, ONE_UpAS_DownMRNA_list, by.x = "ensgene", by.y = "gene" -) -``` - -#graph it and it is 2 blobs!! :) -```{r} -grob8 <- grid::grobTree( - grid::textGrob( - paste( - "Pearson Correlation : ", - round( - cor( - WT_data_Nab3_Sensitive_genes$Avg_Q_IP_ANTISense, - WT_data_Nab3_Sensitive_genes$log2FoldChange, - use = "pairwise.complete.obs" - ), - 4 - ) - ), - x = 0.5, - y = 0.93, - hjust = 0, - gp = gpar(col = '#D37538', fontsize = 11, fontface = "bold") - ) -) - -ggplot2::ggplot(data = WT_data) + - ggplot2::geom_point( - mapping = aes(y = log2FoldChange, x= Avg_Q_IP_ANTISense), - alpha = 2/10, - size = 1 - ) + - ggplot2::scale_x_continuous( - trans = log2_trans(), - breaks = trans_breaks("log2", function(x) 2^x), - labels = trans_format("log2", math_format(2^.x))) + - ggplot2::theme_bw() + - ggplot2::annotation_custom(grob7)+ - ggplot2::annotation_custom(grob8)+ - ggplot2::geom_point(data = WT_data_Nab3_Sensitive_genes, - aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense), - color = '#D37538', - size = 1) + - ggplot2::geom_smooth( - data = WT_data, - aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense), - method = lm, - se = TRUE, - color = 'black' - ) + - ggplot2::geom_smooth( - data = WT_data_Nab3_Sensitive_genes, - aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense), - method = lm, - se = TRUE, - color ='#D37538' - ) -``` - -#graph it again -```{r} -grob9 <- grid::grobTree( - grid::textGrob( - paste( - "Pearson Correlation :", - round( - cor( - WT_data_functional_AS$Avg_Q_IP_ANTISense, - WT_data_functional_AS$log2FoldChange, - use = "pairwise.complete.obs" - ), - 4 - ) - ), - x = 0.5, - y = 0.93, - hjust = 0, - gp = grid::gpar(col = 'red', fontsize = 11, fontface = "bold") - ) -) - - -ggplot2::ggplot(data = WT_data) + - ggplot2::geom_point(mapping = aes(y= log2FoldChange, x= Avg_Q_IP_ANTISense), alpha = 2/10, size = 1) + - ggplot2::scale_x_continuous( - trans = log2_trans(), - breaks = trans_breaks("log2", function(x) 2^x), - labels = trans_format("log2", math_format(2^.x)) - ) + - ggplot2::theme_bw()+ - ggplot2::annotation_custom(grob7)+ - ggplot2::annotation_custom(grob9)+ - ggplot2::geom_point( - data = WT_data_functional_AS, - aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense), - color ='red', - size = 1 - ) + - ggplot2::geom_smooth( - data = WT_data, - aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense), - method = lm, - se = TRUE, - color='black' - ) + - ggplot2::geom_smooth( - data = WT_data_functional_AS, - aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense), - method = lm, - se = TRUE, - color = 'red' - ) -``` - -#all on one. busy, very hard to look at. -```{r} -ggplot2::ggplot(data = WT_data) + - ggplot2::geom_point(mapping = aes(y= log2FoldChange, x= Avg_Q_IP_ANTISense), alpha = 2/10, size = 1) + - ggplot2::scale_x_continuous( - trans = log2_trans(), - breaks = trans_breaks("log2", function(x) 2^x), - labels = trans_format("log2", math_format(2^.x)) - ) + - ggplot2::theme_bw()+ - ggplot2::geom_point( - data = WT_data_Nab3_Sensitive_genes, - aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense), - color = '#D37538', - size = 1 - ) + - ggplot2::geom_point( - data = WT_data_functional_AS, - aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense), - color = 'red', - size = 1 - ) -``` diff --git a/results/2022-1025/analysis_sense_antisense.KA.nb.html b/results/2022-1025/analysis_sense_antisense.KA.nb.html deleted file mode 100644 index 888e350..0000000 --- a/results/2022-1025/analysis_sense_antisense.KA.nb.html +++ /dev/null @@ -1,3049 +0,0 @@ - - - - - - - - - - - - - -R Notebook - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - -
-

Clear environment

- - - -
rm(list = ls())
- - - -
-
-

Load required packages

-
-

Packages have been installed with mamba into a specific, special -conda environment set up to run RStudio sessions

- - - -
library("DESeq2")
-library("tidyverse")
-library("EnhancedVolcano")
-library("ggpubr")
-library("scales")
-library("grid")
- - - -
-
-
-

Set up variables for paths

- - - -
p_repo <- "~/projects-etc/2022_transcriptome-construction"
-p_res <- "results/2022-1025"
-p_txt <- "Alison/txt"
-
-p_full <- paste(p_repo, p_res, p_txt, sep = "/")
-dir.exists(p_full)
-
-p_Alison <- gsub('(.*)/\\w+', '\\1', p_full)
-dir.exists(p_Alison)
-
-p_save <- paste(p_repo, p_res, sep = "/")
- - - -
-
-

Read in count and metadata for mRNA

- - - -
countData_Nascent <- read.delim(
-    paste(p_full, "mRNA_Nascent_Nab3.txt", sep = "/"),
-    header = TRUE
-)
-metadata_Nascent <- read.delim(
-    paste(p_full, "deletionmeta.txt", sep = "/"),
-    header = TRUE
-)
- - - -
-

Make DESEQDataSet Object

- - - -
dds_n <- DESeq2::DESeqDataSetFromMatrix(
-    countData=countData_Nascent,
-    colData=metadata_Nascent, 
-    design= ~ dex,
-    tidy = TRUE
-)
-dds_n
-# class: DESeqDataSet 
-# dim: 6600 5 
-# metadata(1): version
-# assays(1): counts
-# rownames(6600): Q0010 Q0017 ... YPR204C-A YPR204W
-# rowData names(0):
-# colnames(5): Q_6125_N Q_7718_N Q_6126_N Q_7716_N Q_7714_N
-# colData names(2): id dex
- - - -
-
-

Set size factors (from spike in)

- - - -
BiocGenerics::sizeFactors(dds_n) <- c(1, 1.188, 1, 2.097, 1.662)
- - - -

#QUESTION Is this where we want the estimated size -factors to be input? #QUESTION Is the current means of -calculating them appropriate for the DESeq2 model?

-
-
-

Run DESEQ Function

- - - -
dds_n <- DESeq2::DESeq(dds_n)
- - - -
-
-

Look at results table

- - - -
res_n <- DESeq2::results(dds_n)
-DESeq2::results(dds_n, tidy = TRUE) %>% head()
- - - -
-
-

Summary of differential gene expression

- - - -
summary(res_n)
-# out of 6488 with nonzero total read count
-# adjusted p-value < 0.1
-# LFC > 0 (up)       : 2111, 33%
-# LFC < 0 (down)     : 872, 13%
-# outliers [1]       : 1, 0.015%
-# low counts [2]     : 0, 0%
-# (mean count < 0)
-# [1] see 'cooksCutoff' argument of ?results
-# [2] see 'independentFiltering' argument of ?results
- - - -
-

Sort Summary List by adjusted p-value

- - - -
res_n <- res_n[order(res_n$padj), ]
-head(res_n)
- - - -
-
-

Make volcano

- - - -
EnhancedVolcano::EnhancedVolcano(
-    res_n,
-    lab = NA,
-    x = 'log2FoldChange',
-    y = 'pvalue'
-)
- - - -
-
-

Make volcano and save png

- - - -
dir.exists(paste(p_save, "png", sep = "/")) ||
-    dir.create(paste(p_save, "png", sep = "/"))
-
-png <- EnhancedVolcano::EnhancedVolcano(
-    res_n,
-    lab = NA,
-    x = 'log2FoldChange',
-    y = 'padj',
-    xlab = bquote(~Log[2]~ 'fold change'),
-    title = 'Sense Nascent Transcription', 
-    gridlines.major = FALSE,
-    gridlines.minor = FALSE,
-    pCutoff = 0.05,
-    FCcutoff = 2
-)
-
-timestampedFilename <- paste0(
-    paste(p_save, "png", sep = "/"), "/",
-    "sense_differential_nascent_expression", ".",
-    format(Sys.time(), format = "%F_%H%M%S"), ".png"
-)
-ggplot2::ggsave(timestampedFilename, plot = png)
- - - -
-
-

Write DESeq2 to matrix

- - - -
dir.exists(paste(p_save, "txt", sep = "/")) ||
-    dir.create(paste(p_save, "txt", sep = "/"))
-
-p_txt <- paste(p_save, "txt", sep = "/")
-write.table(
-    tibble::rownames_to_column(as.data.frame(res_n), "gene"),
-    file = paste(p_txt, "nascent_mRNA_diff_res.txt", sep = "/"),
-    sep = "\t",
-    row.names = FALSE
-)
-
-write.table(
-    tibble::rownames_to_column(
-        as.data.frame(res_n[order(res_n$padj), ]), "gene"
-    ),
-    file = paste(p_txt, "nascent_mRNA_diff_res_ordered.txt", sep = "/"),
-    sep = "\t",
-    row.names = FALSE
-)
- - - -

#QUESTION I then go in excel and name the gene category -“name” Why does R not name this column? I wish I knew

-

#ANSWER write.table is printing the row -names which, by default, don’t have column names; the row names become -the first column for all lines after the initial one; see the way I -addressed this above

-
-
-

Read ordered DESeq2 matrix back in

-

#COMMENT There has gotta be a better way to do this

-

#ANSWER There is: see below

- - - -
res1_n <- tibble::rownames_to_column(
-    as.data.frame(res_n[order(res_n$padj), ]), "gene"
-)
- - - -

#filter results

- - - -
res1Nab3_up <- dplyr::filter(res1_n, log2FoldChange > 2, padj < 0.05)
-res1Nab3_down <- dplyr::filter(res1_n, log2FoldChange < -2, padj < 0.05)
- - - -

#write filtered results for go terms

- - - -
write.table(
-    res1Nab3_up,
-    file = paste(p_txt, "res1Nab3_up_SENSE.txt", sep = "/"),
-    sep = "\t",
-    row.names = FALSE
-)
-
-write.table(
-    res1Nab3_down,
-    file = paste(p_txt, "res1Nab3_down_SENSE.txt", sep = "/"),
-    sep = "\t",
-    row.names = FALSE
-)
- - - -

#filter results

- - - -
res1Nab3_up_1p5 <- filter(res1_n, log2FoldChange > 1.5, padj < 0.05)
-res1Nab3_down_1p5 <- filter(res1_n, log2FoldChange < -1.5, padj < 0.05)
- - - -

#read in AS count and metadata

- - - -
AS_countData_Nascent <- read.delim(
-    paste(p_full, "AS_mRNA_Nascent_Nab3.txt", sep = "/"),
-    header = TRUE
-)
-AS_metadata_Nascent <- read.delim(
-    paste(p_full, "deletionmeta_AS.txt", sep = "/"),
-    header = TRUE
-)
- - - -
-
-
-

Make DESEQDataSet Object AS

- - - -
dds_n_as<- DESeq2::DESeqDataSetFromMatrix(
-    countData = AS_countData_Nascent,
-    colData = AS_metadata_Nascent, 
-    design= ~ dex,
-    tidy = TRUE
-)
-dds_n_as
- - - -

#size factors #from spike in

- - - -
BiocGenerics::sizeFactors(dds_n_as)  <-  c(1, 1.188, 1, 2.097, 1.662)
- - - -
-
-

Run DESEQ Function

- - - -
dds_n_as <- DESeq2::DESeq(dds_n_as)
- - - -
-
-

Look at results table

- - - -
res_n_as<- DESeq2::results(dds_n_as)
-DESeq2::results(dds_n_as, tidy=TRUE) %>% head()
- - - -
-
-

Summary of differential gene expression

- - - -
summary(res_n_as)
- - - -

##Sort Summary List by p-value

- - - -
res_n_as <- res_n_as[order(res_n_as$padj), ]
-head(res_n_as)
- - - -

#make volcano plot - saves png

- - - -
png <- EnhancedVolcano::EnhancedVolcano(
-    res_n_as,
-    lab = NA,
-    x = 'log2FoldChange',
-    y = 'padj',
-    xlab = bquote(~Log[2]~ 'fold change'),
-    title = 'Antisense Nascent Transcription', 
-    gridlines.major = FALSE,
-    gridlines.minor = FALSE,
-    pCutoff = 0.05,
-    FCcutoff = 2
-)
-
-timestampedFilename <- paste0(
-    paste(p_save, "png", sep = "/"), "/",
-    "AS_differential_nascent_expression", ".",
-    format(Sys.time(), format = "%F_%H%M%S"), ".png"
-)
-ggplot2::ggsave(timestampedFilename, plot = png)
- - - -

#write results file AS

- - - -
write.table(
-    tibble::rownames_to_column(as.data.frame(res_n_as), "gene"),
-    file = paste(p_txt, "AS_Nascent_mRNA_diff_res_sf.txt", sep = "/"),
-    sep = "\t",
-    row.names = FALSE
-)
-
-write.table(
-    tibble::rownames_to_column(
-        as.data.frame(res_n_as[order(res_n_as$padj), ]), "gene"
-    ),
-    file = paste(p_txt, "AS_Nascent_mRNA_diff_res_sf_ordered.txt", sep = "/"),
-    sep = "\t",
-    row.names = FALSE
-)
- - - - - - -
res1_n_as <- tibble::rownames_to_column(
-    as.data.frame(res_n_as[order(res_n_as$padj), ]), "gene"
-)
- - - -

#filter AS results

- - - -
AS_res1Nab3_up <- dplyr::filter(res1_n_as, log2FoldChange > 2, padj < 0.05)
-AS_res1Nab3_down <- dplyr::filter(res1_n_as, log2FoldChange < -2, padj < 0.05)
- - - -

#write AS to file

- - - -
write.table(
-    AS_res1Nab3_up, 
-    file = paste(p_txt, "AS_res1Nab3_up.txt", sep = "/"),
-    sep = "\t",
-    row.names = FALSE
-)
-
-write.table(
-    AS_res1Nab3_down, 
-    file = paste(p_txt, "AS_res1Nab3_down.txt", sep = "/"),
-    sep = "\t",
-    row.names = FALSE
-)
- - - -

#filter AS results different

- - - -
AS_res1Nab3_up_1p5 <- dplyr::filter(res1_n_as, log2FoldChange > 1.5, padj < 0.05)
-AS_res1Nab3_down_1p5 <- dplyr::filter(res1_n_as, log2FoldChange < -1.5, padj < 0.05)
- - - -

#overlap between sense and AS by name

- - - -
Nas_AS_up <- dplyr::inner_join(
-    AS_res1Nab3_up,
-    res1Nab3_up,
-    by = "gene"
-)
-Nas_AS_down <- dplyr::inner_join(
-    AS_res1Nab3_down,
-    res1Nab3_down,
-    by = "gene"
-)
-Nas_AS_down_up <- dplyr::inner_join(
-    AS_res1Nab3_down,
-    res1Nab3_up,
-    by = "gene"
-)
-Nas_AS_up_down <- dplyr::inner_join(
-    AS_res1Nab3_up,
-    res1Nab3_down,
-    by = "gene"
-)
- - - -

#overlap between sense and AS by name - different gates

- - - -
Nas_1.5_AS_up <- dplyr::inner_join(
-    AS_res1Nab3_up_1p5,
-    res1Nab3_up_1p5,
-    by = "gene"
-)
-Nas_1.5_AS_down <- dplyr::inner_join(
-    AS_res1Nab3_down_1p5,
-    res1Nab3_down_1p5,
-    by = "gene"
-)
-Nas_1.5_AS_down_up <- dplyr::inner_join(
-    AS_res1Nab3_down_1p5,
-    res1Nab3_up_1p5,
-    by = "gene"
-)
-Nas_1.5_AS_up_down <- dplyr::inner_join(
-    AS_res1Nab3_up_1p5,
-    res1Nab3_down_1p5,
-    by = "gene"
-)
- - - -

#read in AS of Nab3 TPM - from replicate analysis rmd

- - - -
AS_TPM <- read.delim(
-    paste(p_full, "AS_TPM.txt", sep = "/"),
-    header = TRUE
-)
- - - -

#calc average TPM

- - - -

-AS_TPM <- AS_TPM %>%
-    dplyr::rowwise() %>%
-    dplyr::mutate(
-        Avg_single_Tag_AS_TPM = mean(c(Q_7718_N_AS, Q_7718_N_AS), na.rm = T)
-    ) 
-AS_TPM <- AS_TPM %>%
-    dplyr::rowwise() %>%
-    dplyr::mutate(
-        Avg_parental_AS_TPM = mean(c(Q_6125_N_AS, Q_6126_N_AS), na.rm = T)
-    )
-
- - - -

#extract only relevent columns

- - - -
AS_TPM_Clean <- AS_TPM %>%
-    dplyr::select(c("name", "Avg_single_Tag_AS_TPM", "Avg_parental_AS_TPM"))
-
-#  Change the "name" column to "gene" column
-colnames(AS_TPM_Clean)[colnames(AS_TPM_Clean) == "name"] <- "gene"
- - - -

#access quantiles

- - - -
quantile(AS_TPM_Clean$Avg_single_Tag_AS_TPM) 
-quantile(AS_TPM_Clean$Avg_parental_AS_TPM)
- - - -

#more fine grain

- - - -
quantile(AS_TPM_Clean$Avg_single_Tag_AS_TPM, probs = c(0.8,0.85, .9, .95)) 
-quantile(AS_TPM_Clean$Avg_parental_AS_TPM, probs = c(0.8,0.85, .9, .95))
- - - -

#highest 20% of AS by absolute level

- - - -
Cuttoff_TPM_AS <- dplyr::filter(AS_TPM_Clean, Avg_single_Tag_AS_TPM > 14)
- - - -

#now were doing the intersection of AS of high level and differential -expression

- - - -
TPM_Nas_AS_up <- dplyr::inner_join(AS_res1Nab3_up, Cuttoff_TPM_AS, by = "gene")
-nrow(TPM_Nas_AS_up)
- - - -

#731 AS up

-

#overlap between TPM_Nas_AS_up and res1Nab3_down_1p5 (one way to gate -functional AS)

- - - -
TPM_AS_up_Sense_down <- dplyr::inner_join(
-    TPM_Nas_AS_up,
-    res1Nab3_down_1p5,
-    by = "gene"
-)
-nrow(TPM_AS_up_Sense_down)
-nrow(res1Nab3_down_1p5)
- - - -

#overlap between TPM_Nas_AS_up and res1Nab3_down (different way to -gate functional AS)

- - - -
TPM_AS_up_Sense_down_2 <- dplyr::inner_join(
-    TPM_Nas_AS_up,
-    res1Nab3_down,
-    by = "gene"
-)
-nrow(TPM_AS_up_Sense_down_2)
-nrow(res1Nab3_down)
- - - -

#rename AS table names so I can compare them with sense values - they -will then have different names and labels

- - - -
colnames(res1_n_as) <- c(
-    "gene", "AS_baseMean", "AS_log2FoldChange", "AS_lfcSE",
-    "AS_stat", "AS_pvalue", "AS_padj"
-)
- - - -

#one giant matrix of both sense and Antisense

- - - -
Combinded_RES <- merge(res1_n, res1_n_as, by = "gene")
- - - -

#graph logfoldchange of sense and Antisense #“pairwise.complete.obs” -must be used to throw out incomplete values - I know some authors will -change every zero to 1 to fix this

- - - -
grob1 <- grid::grobTree(
-    grid::textGrob(
-        paste(
-            "Pearson Correlation: ",
-            round(cor(
-                Combinded_RES$log2FoldChange,
-                Combinded_RES$AS_log2FoldChange,
-                use = "pairwise.complete.obs"),
-            4)
-        ),
-        x = 0.5,
-        y = 0.97,
-        hjust = 0,
-        gp = gpar(col = 'blue', fontsize = 11, fontface = "bold")
-    )
-)
-
-ggplot2::ggplot(data = Combinded_RES) + 
-    ggplot2::geom_vline(xintercept = 0, alpha = .5) +
-    ggplot2::geom_hline(yintercept = 0, alpha = .5) +
-    ggplot2::geom_point(
-        data = Combinded_RES,
-        mapping = aes(y = log2FoldChange, x = AS_log2FoldChange),
-        alpha = 4/10,
-        size = 1,
-        color = 'black'
-    ) +
-    ggplot2::geom_smooth(
-        aes(y = log2FoldChange, x = AS_log2FoldChange),
-        method = lm,
-        se = TRUE,
-        color = 'forestgreen'
-    ) +
-    ggplot2::theme_bw() +
-    ggplot2::annotation_custom(grob1) +
-    ggplot2::geom_smooth(
-        data = Combinded_RES,
-        aes(y = log2FoldChange, x = AS_log2FoldChange),
-        method = lm,
-        se = TRUE,
-        color = 'blue'
-    )
- - - -

#check colnames of TPM_Nas_AS_up

- - - -
colnames(TPM_Nas_AS_up)
- - - -

#rename AS table names so I can compare them with sense values - they -will then have different names and labels

- - - -
colnames(TPM_Nas_AS_up) <- c(
-    "gene", "AS_baseMean", "AS_log2FoldChange", "AS_lfcSE", "AS_stat",
-    "AS_pvalue", "AS_padj", "Avg_single_Tag_AS_TPM", "Avg_parental_AS_TPM"
-)
- - - -

#add sense expression info onto highest AS table so those points can -be graphed seperately

- - - -
High_up_AS <- merge(TPM_Nas_AS_up, res1_n, by = "gene")
- - - -

#scatterplot now with high AS highlighted in red

- - - -
grob2 <- grid::grobTree(
-    grid::textGrob(
-        paste(
-            "Pearson Correlation Over Expressed AS: ",
-            round(
-                cor(
-                    High_up_AS$log2FoldChange,
-                    High_up_AS$AS_log2FoldChange,
-                    use = "pairwise.complete.obs"),
-                4
-            )
-        ),
-        x= 0.3,
-        y = 0.93,
-        hjust = 0,
-        gp = gpar(col = 'red', fontsize = 11, fontface = "bold")
-    )
-)
-
-ggplot2::ggplot(data = Combinded_RES) + 
-    ggplot2::geom_vline(xintercept = 0, alpha = .5) +
-    ggplot2::geom_hline(yintercept = 0, alpha = .5) +
-    ggplot2::geom_point(
-        data = Combinded_RES,
-        mapping = aes(y = log2FoldChange, x = AS_log2FoldChange),
-        alpha = 4/10,
-        size = 1,
-        color = 'black'
-    ) +
-    ggplot2::geom_smooth(
-        aes(y = log2FoldChange, x = AS_log2FoldChange),
-        method = lm,
-        se = TRUE,
-        color = 'forestgreen'
-    ) +
-    ggplot2::theme_bw() +
-    ggplot2::geom_point(
-        data = High_up_AS, 
-        aes(y = log2FoldChange,x=AS_log2FoldChange), 
-        color = "red",
-        size =1, 
-        alpha = 4/10
-    )+
-    ggplot2::annotation_custom(grob1) +
-    ggplot2::annotation_custom(grob2) +
-    ggplot2::geom_smooth(
-        data = Combinded_RES,
-        aes(y = log2FoldChange, x = AS_log2FoldChange),
-        method = lm,
-        se = TRUE,
-        color = 'blue'
-    ) +
-    ggplot2::geom_smooth(
-        data = High_up_AS,
-        aes(y = log2FoldChange, x = AS_log2FoldChange),
-        method = lm,
-        se = TRUE,
-        color = "red"
-    )
- - - -
-
-

now it is time to do grouped analysis :)

-

#Make a new variable that’s the same thing (need this to remove -genes, so no gene is asigned to more than one group)

- - - - -

#now we are binning genes by group of mRNA expression #group 1 up -genes #group 5 down genes

- - - - -

#group 3 “neutral”

- - - - -

#remove group 1 genes from DeSeq2_Sense_Results

- - - -
nrow(DeSeq2_Sense_Results) + nrow(grp1_DeSeq2_Sense_Results)
-
- - -
[1] 6600
- - - -

#remove group 5 genes from DeSeq2_Sense_Results

- - - -
nrow(grp1_DeSeq2_Sense_Results) + nrow(grp5_DeSeq2_Sense_Results)
-
- - -
[1] 808
- - - -

#remove group 3 genes from DeSeq2_Sense_Results

- - - -
nrow(grp3_DeSeq2_Sense_Results)
-
- - -
[1] 4418
- - - -

#sanity check count rows

- - - -
nrow(grp5_DeSeq2_Sense_Results)
-
- - -
[1] 72
- - - -

#now from not group 1,3,5 - split into group 2 and 4

- - - - -

#sanity check count rows

- - - -
nrow(grp1_DeSeq2_Sense_Results) +
-nrow(grp5_DeSeq2_Sense_Results) +
-nrow(grp3_DeSeq2_Sense_Results) +
-nrow(grp2_DeSeq2_Sense_Results) +
-nrow(grp4_DeSeq2_Sense_Results)
-
- - -
[1] 6488
- - - -

#sanity check count rows

- - - -
nrow(grp1_DeSeq2_Sense_Results) + nrow(grp5_DeSeq2_Sense_Results)
-
- - -
[1] 808
- - - -

#sanity check count rows #only thing left in “DeSeq2_Sense_Results” -is NA results

- - - -
nrow(DeSeq2_Sense_Results)
-
- - -
[1] 112
- - - -

#now we have groups by sense expression change #now make table to -integrate AS expression info

- - - -
- -
- - - -

#what happens next is how i make violin plots. #I figured this out -like a year ago and have copy pasted this code a bunch. #this is the -bins

- - - -
- -
- - - -

#now the little seperate bins are glued together

- - - -
- -
- - - -

#now we we make a violin plot

- - - -

- - - -

#now we we make a violin plot with p values

- - - -

- - - -

#now were going to do the same thing #the bins stay the same #but in -the bins were are putting AS expression level

- - - -
- -
- - - - - - -
colnames(TPM_group1)
-
- - -
 [1] "gene"                  "baseMean"              "log2FoldChange"        "lfcSE"                 "stat"                  "pvalue"               
- [7] "padj"                  "Q_6125_N_AS"           "Q_7718_N_AS"           "Q_6126_N_AS"           "Q_7716_N_AS"           "length_kb"            
-[13] "ratio_6125"            "ratio_6126"            "Avg_single_Tag_AS_TPM" "Avg_parental_AS_TPM"
- - - -

#making data frames to put into violin plot

- - - - -

#glueing the data frames into one

- - - - -

#make violin plot

- - - -

- - - -

#make violin plot but now with p values

- - - -

- - - -

#now I am gating by fold change >2 instead of 4

- - - - -

#comparing between fold change >2 instead of 4

- - - -
nrow(ONE_TPM_Nas_AS_up)
-
- - -
[1] 878
- - - -

#New Sense filters

- - - - -

#new functional RNA catagory

- - - -
nrow(ONE_UpAS_DownMRNA)
-
- - -
[1] 187
- - - -

#write names only to file #thanks for writing this Kris

- - - -
close(fileConn)
-
- - -
Error in UseMethod("close") : 
-  no applicable method for 'close' applied to an object of class "character"
- - - -

#calc overlaps

- - - -
nrow(ONE_res1Nab3_up)
-
- - -
[1] 1496
- - - -

#HERE ##now I am going to compare to 5781 and 2 WT Q and -G1 #so I gotta read that data in

- - - -
- -
- - - -

#filtered by expression

- - - - -

#calc what high AS is

- - - -
quantile(WT_TPM$Avg_Q_IP_ANTISense, probs = c(0.5, 0.75, 0.8,0.85, 0.9, 0.95)) 
-
- - -
      50%       75%       80%       85%       90%       95% 
- 3.369446 10.541939 14.414169 21.709871 36.698259 79.249805
- - - -

#once again I am gating at 80%

- - - -
- -
- - - -

#check colnames

- - - -
colnames(WT_high_level_AS)
-
- - -
 [1] "ensgene"             "s5781_G1_IP"         "s5781_Q_IP"          "s5782_G1_IP"         "s5782_Q_IP"          "s5781_G1_IP_AS"      "s5781_Q_IP_AS"      
- [8] "s5782_G1_IP_AS"      "s5782_Q_IP_AS"       "length_kb"           "Avg_Q_IP_Sense"      "Avg_G1_IP_Sense"     "Avg_Q_IP_ANTISense"  "Avg_G1_IP_ANTISense"
- - - -

#merge high level and overexpressed

- - - -
- -
- - - -

#now compare WT to Nab3 experiment

- - - -
nrow(High_up_AS)
-
- - -
[1] 731
- - - -

#of the 180 above - how many are functional?

- - - -
nrow(AS_tested)
-
- - -
[1] 180
- - - -

#making a list of gene names from Nab3 data so I can highlight those -genes in WT data

- - - -
nrow(ONE_TPM_Nas_AS_up_list)
-
- - -
[1] 878
- - - -

#all genes in WT - AS tpm and differential expression

- - - -
- -
- - - -

#graph it and it is a blob

- - - -

- - - -

#map Nab3 genes to WT data

- - - -
- -
- - - -

#graph it and it is 2 blobs!! :)

- - - -

- - - -

#graph it again

- - - -

- - - -

#all on one. busy, very hard to look at.

- - - -

- - -
-
- -
---
title: "R Notebook"
output: html_notebook
---

---
title: "R Notebook"
output: html_notebook
---
# Clear environment
```{r}
rm(list = ls())
```

# Load required packages
## Packages have been installed with mamba into a specific, special conda environment set up to run RStudio sessions
```{r}
library("DESeq2")
library("tidyverse")
library("EnhancedVolcano")
library("ggpubr")
library("scales")
library("grid")
```

# Set up variables for paths
```{r}
p_repo <- "~/projects-etc/2022_transcriptome-construction"
p_res <- "results/2022-1025"
p_txt <- "Alison/txt"

p_full <- paste(p_repo, p_res, p_txt, sep = "/")
dir.exists(p_full)

p_Alison <- gsub('(.*)/\\w+', '\\1', p_full)
dir.exists(p_Alison)

p_save <- paste(p_repo, p_res, sep = "/")
```

# Read in count and metadata for mRNA
```{r}
countData_Nascent <- read.delim(
    paste(p_full, "mRNA_Nascent_Nab3.txt", sep = "/"),
    header = TRUE
)
metadata_Nascent <- read.delim(
    paste(p_full, "deletionmeta.txt", sep = "/"),
    header = TRUE
)
```


## Make DESEQDataSet Object
```{r}
dds_n <- DESeq2::DESeqDataSetFromMatrix(
    countData=countData_Nascent,
    colData=metadata_Nascent, 
    design= ~ dex,
    tidy = TRUE
)
dds_n
# class: DESeqDataSet 
# dim: 6600 5 
# metadata(1): version
# assays(1): counts
# rownames(6600): Q0010 Q0017 ... YPR204C-A YPR204W
# rowData names(0):
# colnames(5): Q_6125_N Q_7718_N Q_6126_N Q_7716_N Q_7714_N
# colData names(2): id dex
```

## Set size factors (from spike in)
```{r}
BiocGenerics::sizeFactors(dds_n) <- c(1, 1.188, 1, 2.097, 1.662)
```

`#QUESTION` Is this where we want the estimated size factors to be input?
`#QUESTION` Is the current means of calculating them appropriate for the DESeq2 model?

## Run DESEQ Function
```{r}
dds_n <- DESeq2::DESeq(dds_n)
```

## Look at results table
```{r}
res_n <- DESeq2::results(dds_n)
DESeq2::results(dds_n, tidy = TRUE) %>% head()
```


## Summary of differential gene expression
```{r}
summary(res_n)
# out of 6488 with nonzero total read count
# adjusted p-value < 0.1
# LFC > 0 (up)       : 2111, 33%
# LFC < 0 (down)     : 872, 13%
# outliers [1]       : 1, 0.015%
# low counts [2]     : 0, 0%
# (mean count < 0)
# [1] see 'cooksCutoff' argument of ?results
# [2] see 'independentFiltering' argument of ?results
```


### Sort Summary List by adjusted p-value
```{r}
res_n <- res_n[order(res_n$padj), ]
head(res_n)
```

### Make volcano
```{r}
EnhancedVolcano::EnhancedVolcano(
    res_n,
    lab = NA,
    x = 'log2FoldChange',
    y = 'pvalue'
)
```

### Make volcano and save png
```{r}
dir.exists(paste(p_save, "png", sep = "/")) ||
    dir.create(paste(p_save, "png", sep = "/"))

png <- EnhancedVolcano::EnhancedVolcano(
    res_n,
    lab = NA,
    x = 'log2FoldChange',
    y = 'padj',
    xlab = bquote(~Log[2]~ 'fold change'),
    title = 'Sense Nascent Transcription', 
    gridlines.major = FALSE,
    gridlines.minor = FALSE,
    pCutoff = 0.05,
    FCcutoff = 2
)

timestampedFilename <- paste0(
    paste(p_save, "png", sep = "/"), "/",
    "sense_differential_nascent_expression", ".",
    format(Sys.time(), format = "%F_%H%M%S"), ".png"
)
ggplot2::ggsave(timestampedFilename, plot = png)
```

### Write DESeq2 to matrix
```{r}
dir.exists(paste(p_save, "txt", sep = "/")) ||
    dir.create(paste(p_save, "txt", sep = "/"))

p_txt <- paste(p_save, "txt", sep = "/")
write.table(
    tibble::rownames_to_column(as.data.frame(res_n), "gene"),
    file = paste(p_txt, "nascent_mRNA_diff_res.txt", sep = "/"),
    sep = "\t",
    row.names = FALSE
)

write.table(
    tibble::rownames_to_column(
        as.data.frame(res_n[order(res_n$padj), ]), "gene"
    ),
    file = paste(p_txt, "nascent_mRNA_diff_res_ordered.txt", sep = "/"),
    sep = "\t",
    row.names = FALSE
)
```
`#QUESTION` I then go in excel and name the gene category "name" Why does R not name this column? I wish I knew

`#ANSWER` `write.table` is printing the row names which, by default, don't have column names; the row names become the first column for all lines after the initial one; see the way I addressed this above

### Read ordered DESeq2 matrix back in
`#COMMENT` There has gotta be a better way to do this

`#ANSWER` There is: see below
```{r}
res1_n <- tibble::rownames_to_column(
    as.data.frame(res_n[order(res_n$padj), ]), "gene"
)
```

#filter results
```{r}
res1Nab3_up <- dplyr::filter(res1_n, log2FoldChange > 2, padj < 0.05)
res1Nab3_down <- dplyr::filter(res1_n, log2FoldChange < -2, padj < 0.05)
```

#write filtered results for go terms
```{r}
write.table(
    res1Nab3_up,
    file = paste(p_txt, "res1Nab3_up_SENSE.txt", sep = "/"),
    sep = "\t",
    row.names = FALSE
)

write.table(
    res1Nab3_down,
    file = paste(p_txt, "res1Nab3_down_SENSE.txt", sep = "/"),
    sep = "\t",
    row.names = FALSE
)
```

#filter results
```{r}
res1Nab3_up_1p5 <- filter(res1_n, log2FoldChange > 1.5, padj < 0.05)
res1Nab3_down_1p5 <- filter(res1_n, log2FoldChange < -1.5, padj < 0.05)
```


#read in AS count and metadata
```{r}
AS_countData_Nascent <- read.delim(
    paste(p_full, "AS_mRNA_Nascent_Nab3.txt", sep = "/"),
    header = TRUE
)
AS_metadata_Nascent <- read.delim(
    paste(p_full, "deletionmeta_AS.txt", sep = "/"),
    header = TRUE
)
```


## Make DESEQDataSet Object AS
```{r}
dds_n_as<- DESeq2::DESeqDataSetFromMatrix(
    countData = AS_countData_Nascent,
    colData = AS_metadata_Nascent, 
    design= ~ dex,
    tidy = TRUE
)
dds_n_as
```

#size factors
#from spike in
```{r}
BiocGenerics::sizeFactors(dds_n_as)  <-  c(1, 1.188, 1, 2.097, 1.662)
```


## Run DESEQ Function
```{r}
dds_n_as <- DESeq2::DESeq(dds_n_as)
```


## Look at results table
```{r}
res_n_as<- DESeq2::results(dds_n_as)
DESeq2::results(dds_n_as, tidy=TRUE) %>% head()
```


## Summary of differential gene expression
```{r}
summary(res_n_as)
```


##Sort Summary List by p-value
```{r}
res_n_as <- res_n_as[order(res_n_as$padj), ]
head(res_n_as)
```

#make volcano plot - saves png 
```{r}
png <- EnhancedVolcano::EnhancedVolcano(
    res_n_as,
    lab = NA,
    x = 'log2FoldChange',
    y = 'padj',
    xlab = bquote(~Log[2]~ 'fold change'),
    title = 'Antisense Nascent Transcription', 
    gridlines.major = FALSE,
    gridlines.minor = FALSE,
    pCutoff = 0.05,
    FCcutoff = 2
)

timestampedFilename <- paste0(
    paste(p_save, "png", sep = "/"), "/",
    "AS_differential_nascent_expression", ".",
    format(Sys.time(), format = "%F_%H%M%S"), ".png"
)
ggplot2::ggsave(timestampedFilename, plot = png)
```

#write results file AS
```{r}
write.table(
    tibble::rownames_to_column(as.data.frame(res_n_as), "gene"),
    file = paste(p_txt, "AS_Nascent_mRNA_diff_res_sf.txt", sep = "/"),
    sep = "\t",
    row.names = FALSE
)

write.table(
    tibble::rownames_to_column(
        as.data.frame(res_n_as[order(res_n_as$padj), ]), "gene"
    ),
    file = paste(p_txt, "AS_Nascent_mRNA_diff_res_sf_ordered.txt", sep = "/"),
    sep = "\t",
    row.names = FALSE
)
```

```{r}
res1_n_as <- tibble::rownames_to_column(
    as.data.frame(res_n_as[order(res_n_as$padj), ]), "gene"
)
```

#filter AS results 
```{r}
AS_res1Nab3_up <- dplyr::filter(res1_n_as, log2FoldChange > 2, padj < 0.05)
AS_res1Nab3_down <- dplyr::filter(res1_n_as, log2FoldChange < -2, padj < 0.05)
```

#write AS to file 
```{r}
write.table(
    AS_res1Nab3_up, 
    file = paste(p_txt, "AS_res1Nab3_up.txt", sep = "/"),
    sep = "\t",
    row.names = FALSE
)

write.table(
    AS_res1Nab3_down, 
    file = paste(p_txt, "AS_res1Nab3_down.txt", sep = "/"),
    sep = "\t",
    row.names = FALSE
)
```


#filter AS results different 
```{r}
AS_res1Nab3_up_1p5 <- dplyr::filter(res1_n_as, log2FoldChange > 1.5, padj < 0.05)
AS_res1Nab3_down_1p5 <- dplyr::filter(res1_n_as, log2FoldChange < -1.5, padj < 0.05)
```


#overlap between sense and AS by name 
```{r}
Nas_AS_up <- dplyr::inner_join(
    AS_res1Nab3_up,
    res1Nab3_up,
    by = "gene"
)
Nas_AS_down <- dplyr::inner_join(
    AS_res1Nab3_down,
    res1Nab3_down,
    by = "gene"
)
Nas_AS_down_up <- dplyr::inner_join(
    AS_res1Nab3_down,
    res1Nab3_up,
    by = "gene"
)
Nas_AS_up_down <- dplyr::inner_join(
    AS_res1Nab3_up,
    res1Nab3_down,
    by = "gene"
)
```

#overlap between sense and AS by name - different gates 
```{r}
Nas_1.5_AS_up <- dplyr::inner_join(
    AS_res1Nab3_up_1p5,
    res1Nab3_up_1p5,
    by = "gene"
)
Nas_1.5_AS_down <- dplyr::inner_join(
    AS_res1Nab3_down_1p5,
    res1Nab3_down_1p5,
    by = "gene"
)
Nas_1.5_AS_down_up <- dplyr::inner_join(
    AS_res1Nab3_down_1p5,
    res1Nab3_up_1p5,
    by = "gene"
)
Nas_1.5_AS_up_down <- dplyr::inner_join(
    AS_res1Nab3_up_1p5,
    res1Nab3_down_1p5,
    by = "gene"
)
```

#read in AS of Nab3 TPM - from replicate analysis rmd 
```{r}
AS_TPM <- read.delim(
    paste(p_full, "AS_TPM.txt", sep = "/"),
    header = TRUE
)
```

#calc average TPM 
```{r}

AS_TPM <- AS_TPM %>%
    dplyr::rowwise() %>%
    dplyr::mutate(
        Avg_single_Tag_AS_TPM = mean(c(Q_7718_N_AS, Q_7718_N_AS), na.rm = T)
    ) 
AS_TPM <- AS_TPM %>%
    dplyr::rowwise() %>%
    dplyr::mutate(
        Avg_parental_AS_TPM = mean(c(Q_6125_N_AS, Q_6126_N_AS), na.rm = T)
    )

```

#extract only relevent columns 
```{r}
AS_TPM_Clean <- AS_TPM %>%
    dplyr::select(c("name", "Avg_single_Tag_AS_TPM", "Avg_parental_AS_TPM"))

#  Change the "name" column to "gene" column
colnames(AS_TPM_Clean)[colnames(AS_TPM_Clean) == "name"] <- "gene"
```

#access quantiles 
```{r}
quantile(AS_TPM_Clean$Avg_single_Tag_AS_TPM) 
quantile(AS_TPM_Clean$Avg_parental_AS_TPM) 
```

#more fine grain 
```{r}
quantile(AS_TPM_Clean$Avg_single_Tag_AS_TPM, probs = c(0.8,0.85, .9, .95)) 
quantile(AS_TPM_Clean$Avg_parental_AS_TPM, probs = c(0.8,0.85, .9, .95)) 
```

#highest 20% of AS by absolute level 
```{r}
Cuttoff_TPM_AS <- dplyr::filter(AS_TPM_Clean, Avg_single_Tag_AS_TPM > 14)
```

#now were doing the intersection of AS of high level and differential expression 
```{r}
TPM_Nas_AS_up <- dplyr::inner_join(AS_res1Nab3_up, Cuttoff_TPM_AS, by = "gene")
nrow(TPM_Nas_AS_up)
```
#731 AS up 

#overlap between TPM_Nas_AS_up and res1Nab3_down_1p5 (one way to gate functional AS)
```{r}
TPM_AS_up_Sense_down <- dplyr::inner_join(
    TPM_Nas_AS_up,
    res1Nab3_down_1p5,
    by = "gene"
)
nrow(TPM_AS_up_Sense_down)
nrow(res1Nab3_down_1p5)
```

#overlap between TPM_Nas_AS_up and res1Nab3_down (different way to gate functional AS)
```{r}
TPM_AS_up_Sense_down_2 <- dplyr::inner_join(
    TPM_Nas_AS_up,
    res1Nab3_down,
    by = "gene"
)
nrow(TPM_AS_up_Sense_down_2)
nrow(res1Nab3_down)
```

#rename AS table names so I can compare them with sense values - they will then have different names and labels 
```{r}
colnames(res1_n_as) <- c(
    "gene", "AS_baseMean", "AS_log2FoldChange", "AS_lfcSE",
    "AS_stat", "AS_pvalue", "AS_padj"
)
```

#one giant matrix of both sense and Antisense 
```{r}
Combinded_RES <- merge(res1_n, res1_n_as, by = "gene")
```

#graph logfoldchange of sense and Antisense
#"pairwise.complete.obs" must be used to throw out incomplete values - I know some authors will change every zero to 1 to fix this 
```{r}
grob1 <- grid::grobTree(
    grid::textGrob(
        paste(
            "Pearson Correlation: ",
            round(cor(
                Combinded_RES$log2FoldChange,
                Combinded_RES$AS_log2FoldChange,
                use = "pairwise.complete.obs"),
            4)
        ),
        x = 0.5,
        y = 0.97,
        hjust = 0,
        gp = gpar(col = 'blue', fontsize = 11, fontface = "bold")
    )
)

ggplot2::ggplot(data = Combinded_RES) + 
    ggplot2::geom_vline(xintercept = 0, alpha = .5) +
    ggplot2::geom_hline(yintercept = 0, alpha = .5) +
    ggplot2::geom_point(
        data = Combinded_RES,
        mapping = aes(y = log2FoldChange, x = AS_log2FoldChange),
        alpha = 4/10,
        size = 1,
        color = 'black'
    ) +
    ggplot2::geom_smooth(
        aes(y = log2FoldChange, x = AS_log2FoldChange),
        method = lm,
        se = TRUE,
        color = 'forestgreen'
    ) +
    ggplot2::theme_bw() +
    ggplot2::annotation_custom(grob1) +
    ggplot2::geom_smooth(
        data = Combinded_RES,
        aes(y = log2FoldChange, x = AS_log2FoldChange),
        method = lm,
        se = TRUE,
        color = 'blue'
    )
```


#check colnames of TPM_Nas_AS_up
```{r}
colnames(TPM_Nas_AS_up)
```

#rename AS table names so I can compare them with sense values - they will then have different names and labels 
```{r}
colnames(TPM_Nas_AS_up) <- c(
    "gene", "AS_baseMean", "AS_log2FoldChange", "AS_lfcSE", "AS_stat",
    "AS_pvalue", "AS_padj", "Avg_single_Tag_AS_TPM", "Avg_parental_AS_TPM"
)
```

#add sense expression info onto highest AS table so those points can be graphed seperately 
```{r}
High_up_AS <- merge(TPM_Nas_AS_up, res1_n, by = "gene")
```

#scatterplot now with high AS highlighted in red 
```{r}
grob2 <- grid::grobTree(
    grid::textGrob(
        paste(
            "Pearson Correlation Over Expressed AS: ",
            round(
                cor(
                    High_up_AS$log2FoldChange,
                    High_up_AS$AS_log2FoldChange,
                    use = "pairwise.complete.obs"),
                4
            )
        ),
        x= 0.3,
        y = 0.93,
        hjust = 0,
        gp = gpar(col = 'red', fontsize = 11, fontface = "bold")
    )
)

ggplot2::ggplot(data = Combinded_RES) + 
    ggplot2::geom_vline(xintercept = 0, alpha = .5) +
    ggplot2::geom_hline(yintercept = 0, alpha = .5) +
    ggplot2::geom_point(
        data = Combinded_RES,
        mapping = aes(y = log2FoldChange, x = AS_log2FoldChange),
        alpha = 4/10,
        size = 1,
        color = 'black'
    ) +
    ggplot2::geom_smooth(
        aes(y = log2FoldChange, x = AS_log2FoldChange),
        method = lm,
        se = TRUE,
        color = 'forestgreen'
    ) +
    ggplot2::theme_bw() +
    ggplot2::geom_point(
        data = High_up_AS, 
        aes(y = log2FoldChange,x=AS_log2FoldChange), 
        color = "red",
        size =1, 
        alpha = 4/10
    )+
    ggplot2::annotation_custom(grob1) +
    ggplot2::annotation_custom(grob2) +
    ggplot2::geom_smooth(
        data = Combinded_RES,
        aes(y = log2FoldChange, x = AS_log2FoldChange),
        method = lm,
        se = TRUE,
        color = 'blue'
    ) +
    ggplot2::geom_smooth(
        data = High_up_AS,
        aes(y = log2FoldChange, x = AS_log2FoldChange),
        method = lm,
        se = TRUE,
        color = "red"
    )
```


## now it is time to do grouped analysis :) 
#Make a new variable that's the same thing (need this to remove genes, so no gene is asigned to more than one group)
```{r}
DeSeq2_Sense_Results <- res1_n
```

#now we are binning genes by group of mRNA expression
#group 1 up genes
#group 5 down genes
```{r}
grp1_DeSeq2_Sense_Results <- dplyr::filter(res1_n, log2FoldChange > 2, padj < 0.05)
grp5_DeSeq2_Sense_Results <- dplyr::filter(res1_n, log2FoldChange < -2, padj < 0.05)
```

#group 3 "neutral"
```{r}
grp3_DeSeq2_Sense_Results <- dplyr::filter(res1_n, log2FoldChange < 1 , log2FoldChange >-1 )
```

#remove group 1 genes from DeSeq2_Sense_Results 
```{r}
DeSeq2_Sense_Results <- DeSeq2_Sense_Results[
    !(DeSeq2_Sense_Results$gene %in% grp1_DeSeq2_Sense_Results$gene), 
]
nrow(DeSeq2_Sense_Results) + nrow(grp1_DeSeq2_Sense_Results)
```

#remove group 5 genes from DeSeq2_Sense_Results 
```{r}
DeSeq2_Sense_Results <- DeSeq2_Sense_Results[
    !(DeSeq2_Sense_Results$gene %in% grp5_DeSeq2_Sense_Results$gene), 
]

nrow(DeSeq2_Sense_Results) +
nrow(grp1_DeSeq2_Sense_Results) +
nrow(grp5_DeSeq2_Sense_Results)

nrow(DeSeq2_Sense_Results)

nrow(grp1_DeSeq2_Sense_Results) + nrow(grp5_DeSeq2_Sense_Results)
```

#remove group 3 genes from DeSeq2_Sense_Results 
```{r}
DeSeq2_Sense_Results <- DeSeq2_Sense_Results[
    !(DeSeq2_Sense_Results$gene %in% grp3_DeSeq2_Sense_Results$gene), 
]
nrow(DeSeq2_Sense_Results)
nrow(grp3_DeSeq2_Sense_Results)
```

#sanity check count rows
```{r}
nrow(grp1_DeSeq2_Sense_Results) 
nrow(grp5_DeSeq2_Sense_Results)
```

#now from not group 1,3,5 - split into group 2 and 4
```{r}
grp2_DeSeq2_Sense_Results <- filter(DeSeq2_Sense_Results, log2FoldChange >=1)
grp4_DeSeq2_Sense_Results <- filter(DeSeq2_Sense_Results, log2FoldChange <= -1 )
```

#sanity check count rows
```{r}
nrow(grp1_DeSeq2_Sense_Results) +
nrow(grp5_DeSeq2_Sense_Results) +
nrow(grp3_DeSeq2_Sense_Results) +
nrow(grp2_DeSeq2_Sense_Results) +
nrow(grp4_DeSeq2_Sense_Results)
```

#sanity check count rows
```{r}
DeSeq2_Sense_Results <- DeSeq2_Sense_Results[
    !(DeSeq2_Sense_Results$gene %in% grp5_DeSeq2_Sense_Results$gene), 
]

nrow(DeSeq2_Sense_Results) +
nrow(grp1_DeSeq2_Sense_Results) +
nrow(grp5_DeSeq2_Sense_Results)

nrow(DeSeq2_Sense_Results)

nrow(grp1_DeSeq2_Sense_Results) + nrow(grp5_DeSeq2_Sense_Results)
```

#sanity check count rows
#only thing left in "DeSeq2_Sense_Results" is NA results 
```{r}
DeSeq2_Sense_Results <- DeSeq2_Sense_Results[
    !(DeSeq2_Sense_Results$gene %in% grp2_DeSeq2_Sense_Results$gene), 
]
DeSeq2_Sense_Results <- DeSeq2_Sense_Results[
    !(DeSeq2_Sense_Results$gene %in% grp4_DeSeq2_Sense_Results$gene), 
]
nrow(DeSeq2_Sense_Results)
```

#now we have groups by sense expression change
#now make table to integrate AS expression info 
```{r}
group1 <- merge(grp1_DeSeq2_Sense_Results, res1_n_as, by = "gene")
group2 <- merge(grp2_DeSeq2_Sense_Results, res1_n_as, by = "gene")
group3 <- merge(grp3_DeSeq2_Sense_Results, res1_n_as, by = "gene")
group4 <- merge(grp4_DeSeq2_Sense_Results, res1_n_as, by = "gene")
group5 <- merge(grp5_DeSeq2_Sense_Results, res1_n_as, by = "gene")
```

#what happens next is how i make violin plots. 
#I figured this out like a year ago and have copy pasted this code a bunch.
#this is the bins 
```{r}
mRNA1 <- data.frame(AS_log2FoldChange = group1$AS_log2FoldChange)
mRNA2 <- data.frame(AS_log2FoldChange = group2$AS_log2FoldChange)
mRNA3 <- data.frame(AS_log2FoldChange = group3$AS_log2FoldChange)
mRNA4 <- data.frame(AS_log2FoldChange = group4$AS_log2FoldChange)
mRNA5 <- data.frame(AS_log2FoldChange = group5$AS_log2FoldChange)
```

#now the little seperate bins are glued together 
```{r}
# Now, combine your two dataframes into one.  
# First make a new column in each that will be 
# a variable to identify where they came from later.
mRNA1$expression <- 'Over_Expressed'
mRNA2$expression <- 'Over_Expressed_not_sig'
mRNA3$expression <- 'Neutral'
mRNA4$expression <- 'Under_Expressed_not_sig'
mRNA5$expression <- 'Under_Expressed'

# and combine into your new data frame vegLengths
dataframe1 <- rbind(mRNA2, mRNA3, mRNA4, mRNA5, mRNA1)
```

#now we we make a violin plot 
```{r}
p <- ggplot2::ggplot(
    dataframe1,
    aes(factor(expression), fill = expression, AS_log2FoldChange)
) +
    ggplot2::geom_violin(draw_quantiles = c(0.25, 0.5, 0.75)) +
    ggplot2::scale_fill_manual(
        values = c("#9F9BA2", "limegreen", "#44A043", "#D1B3EC", "#825CA6")
    ) +
    ggplot2::theme_minimal()
p
```

#now we we make a violin plot with p values 
```{r}
my_comparisons <- list(
    c('Neutral', 'Over_Expressed'),
    c('Neutral', 'Under_Expressed'),
    c('Under_Expressed', 'Over_Expressed')
)

p <- ggplot2::ggplot(
    dataframe1,
    aes(factor(expression), fill = expression, AS_log2FoldChange)
) +
    ggplot2::geom_violin(draw_quantiles = c(0.25, 0.5, 0.75)) +
    ggplot2::scale_fill_manual(
        values = c("#9F9BA2", "limegreen", "#44A043", "#D1B3EC", "#825CA6")
    ) +
    ggplot2::theme_minimal() +
    ggpubr::stat_compare_means(comparisons = my_comparisons)
p
```

#now were going to do the same thing
#the bins stay the same
#but in the bins were are putting AS expression level 
```{r}
colnames(AS_TPM)[colnames(AS_TPM) == "name"] <- "gene"

TPM_group1 <- merge(grp1_DeSeq2_Sense_Results, AS_TPM, by = "gene")
TPM_group2 <- merge(grp2_DeSeq2_Sense_Results, AS_TPM, by = "gene")
TPM_group3 <- merge(grp3_DeSeq2_Sense_Results, AS_TPM, by = "gene")
TPM_group4 <- merge(grp4_DeSeq2_Sense_Results, AS_TPM, by = "gene")
TPM_group5 <- merge(grp5_DeSeq2_Sense_Results, AS_TPM, by = "gene")
```

```{r}
colnames(TPM_group1)
```

#making data frames to put into violin plot
```{r}
TPM_mRNA1 <- data.frame(AS_Level_Depletion = TPM_group1$Avg_single_Tag_AS_TPM)
TPM_mRNA2 <- data.frame(AS_Level_Depletion = TPM_group2$Avg_single_Tag_AS_TPM)
TPM_mRNA3 <- data.frame(AS_Level_Depletion = TPM_group3$Avg_single_Tag_AS_TPM)
TPM_mRNA4 <- data.frame(AS_Level_Depletion = TPM_group4$Avg_single_Tag_AS_TPM)
TPM_mRNA5 <- data.frame(AS_Level_Depletion = TPM_group5$Avg_single_Tag_AS_TPM)
```

#glueing the data frames into one 
```{r}
# Now, combine your two dataframes into one.  
# First make a new column in each that will be 
# a variable to identify where they came from later.
TPM_mRNA1$expression <- 'Over_Expressed'
TPM_mRNA2$expression <- 'Over_Expressed_not_sig'
TPM_mRNA3$expression <- 'Neutral'
TPM_mRNA4$expression <- 'Under_Expressed_not_sig'
TPM_mRNA5$expression <- 'Under_Expressed'

# and combine into your new data frame vegLengths
dataframe2 <- rbind(TPM_mRNA2, TPM_mRNA3, TPM_mRNA4, TPM_mRNA5, TPM_mRNA1)
```

#make violin plot
```{r}
my_comparisons <- list(
    c('Neutral', 'Over_Expressed'),
    c('Neutral', 'Under_Expressed'),
    c('Under_Expressed', 'Over_Expressed')
)

p2 <- ggplot2::ggplot(
    dataframe2,
    aes(factor(expression), fill = expression, AS_Level_Depletion)
) + ggplot2::geom_violin(draw_quantiles = c(0.25, 0.5, 0.75)) +
    ggplot2::scale_fill_manual(
        values = c("#9F9BA2", "limegreen", "#44A043", "#D1B3EC", "#825CA6")
    ) +
    ggplot2::theme_minimal() +
    ggplot2::ylim(0, 100)
p2
```


#make violin plot but now with p values 
```{r}
my_comparisons <- list(
    c('Neutral', 'Over_Expressed'),
    c('Neutral', 'Under_Expressed'),
    c('Under_Expressed', 'Over_Expressed')
)

p2 <- ggplot2::ggplot(
    dataframe2,
    aes(factor(expression), fill = expression, AS_Level_Depletion)
) +
    ggplot2::geom_violin(draw_quantiles = c(0.25, 0.5, 0.75)) +
    ggplot2::scale_fill_manual(
        values = c("#9F9BA2", "limegreen", "#44A043", "#D1B3EC", "#825CA6")
    ) +
    ggplot2::theme_minimal() +
    ggpubr::stat_compare_means(comparisons = my_comparisons, method = "t.test")
p2
```


#now I am gating by fold change >2 instead of 4 
```{r}
ONE_AS_res1Nab3_up <- dplyr::filter(
    res1_n_as,
    AS_log2FoldChange > 1,
    AS_padj < 0.05
)
ONE_AS_res1Nab3_down <- dplyr::filter(
    res1_n_as,
    AS_log2FoldChange < -1,
    AS_padj < 0.05
)
```

#comparing between fold change >2 instead of 4 
```{r}
ONE_TPM_Nas_AS_up <- dplyr::inner_join(
    ONE_AS_res1Nab3_up, Cuttoff_TPM_AS, by = "gene"
)
nrow(TPM_Nas_AS_up)
nrow(ONE_TPM_Nas_AS_up)
```

#New Sense filters 
```{r}
ONE_res1Nab3_up <- dplyr::filter(res1_n, log2FoldChange > 1, padj < 0.05)
ONE_res1Nab3_down <- dplyr::filter(res1_n, log2FoldChange < -1, padj < 0.05)
```


#new functional RNA catagory 
```{r}
ONE_UpAS_DownMRNA <- inner_join(ONE_TPM_Nas_AS_up, ONE_res1Nab3_down, by = "gene")
nrow(ONE_UpAS_DownMRNA)
```

#write names only to file
#thanks for writing this Kris
```{r}
fileConn <- paste(p_txt, "functional_AS_test_list.txt", sep = "/")
writeLines(as.character(ONE_UpAS_DownMRNA$gene), fileConn)
close(fileConn)
```

#calc overlaps 
```{r}
ONE_UpAS_UpMRNA <- dplyr::inner_join(
    ONE_TPM_Nas_AS_up, ONE_res1Nab3_up, by = "gene"
)
nrow(ONE_UpAS_UpMRNA)
nrow(ONE_TPM_Nas_AS_up)
nrow(ONE_res1Nab3_up)
```


`#HERE`
##now I am going to compare to 5781 and 2 WT Q and G1
#so I gotta read that data in 
```{r}
WT_AS_diff_expression <- read.delim(
    paste(p_full, "res_order_AS_Diff_expression.txt", sep = "/"),
    header = TRUE
)
WT_TPM <- read.delim(
    paste(p_full, "WT_Q_G1_TPM.txt", sep = "/"),
    header = TRUE
)
```

#filtered by expression 
```{r}
WT_AS_UP_Q <- dplyr::filter(
    WT_AS_diff_expression,
    log2FoldChange > 1,
    padj < 0.05
)
```

#calc what high AS is 
```{r}
quantile(WT_TPM$Avg_Q_IP_ANTISense, probs = c(0.5, 0.75, 0.8,0.85, 0.9, 0.95)) 
```
#once again I am gating at 80% 
```{r}
WT_high_level_AS <- dplyr::filter(WT_TPM, Avg_Q_IP_ANTISense > 14)
```

#check colnames 
```{r}
colnames(WT_high_level_AS)
```


#merge high level and overexpressed 
```{r}
colnames(WT_AS_UP_Q)[colnames(WT_AS_UP_Q) == "name"] <- "gene"
WT_best_AS <- merge(WT_AS_UP_Q, WT_high_level_AS, by.x = "gene", by.y = "ensgene")
```

#now compare WT to Nab3 experiment 
```{r}
AS_tested <- merge(WT_best_AS, High_up_AS, by = "gene")
nrow(AS_tested)
nrow(WT_best_AS)
nrow(High_up_AS)
```

#of the 180 above - how many are functional?
```{r}
Functional_WT <- merge(ONE_UpAS_DownMRNA, AS_tested, by = "gene")
nrow(Functional_WT)
nrow(ONE_UpAS_DownMRNA)
nrow(AS_tested)

```

#making a list of gene names from Nab3 data so I can highlight those genes in WT data 
```{r}
ONE_UpAS_DownMRNA_list <- ONE_UpAS_DownMRNA %>% dplyr::select(c("gene"))
ONE_TPM_Nas_AS_up_list <- ONE_TPM_Nas_AS_up %>% dplyr::select(c("gene"))

nrow(ONE_UpAS_DownMRNA_list)
nrow(ONE_TPM_Nas_AS_up_list)
```
#all genes in WT - AS tpm and differential expression 
```{r}
colnames(WT_AS_diff_expression)[
    colnames(WT_AS_diff_expression) == "name"
] <- "gene"
WT_data <- merge(WT_TPM, WT_AS_diff_expression, by.x = "ensgene", by.y = "gene")
```

#graph it and it is a blob 
```{r}
grob7 <- grid::grobTree(
    grid::textGrob(
        paste(
            "Pearson Correlation : ",
            round(
                cor(
                    WT_data$Avg_Q_IP_ANTISense,
                    WT_data$log2FoldChange,
                    use = "pairwise.complete.obs"
                ),
                4
            )
        ),
        x = 0.5,
        y = 0.97,
        hjust = 0,
        gp = gpar(col = "black", fontsize = 11, fontface = "bold")
    )
)


ggplot2::ggplot(data = WT_data) + 
    ggplot2::geom_point(
        mapping = aes(y = log2FoldChange, x= Avg_Q_IP_ANTISense),
        alpha = 2/10,
        size = 1
    ) +
    ggplot2::scale_x_continuous(
        trans = log2_trans(),
        breaks = trans_breaks("log2", function(x) 2^x),
        labels = trans_format("log2", math_format(2^.x))
    ) +
    ggplot2::theme_bw()+
    ggplot2::annotation_custom(grob7)+
    ggplot2::geom_smooth(
        data = WT_data,
        aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense),
        method = lm,
        se = TRUE,
        color = 'black'
    )
```



#map Nab3 genes to WT data 
```{r}
WT_data_Nab3_Sensitive_genes <- merge(
    WT_data, ONE_TPM_Nas_AS_up_list, by.x = "ensgene", by.y = "gene"
)

WT_data_functional_AS <- merge(
    WT_data, ONE_UpAS_DownMRNA_list, by.x = "ensgene", by.y = "gene"
)
```

#graph it and it is 2 blobs!! :) 
```{r}
grob8 <- grid::grobTree(
    grid::textGrob(
        paste(
            "Pearson Correlation : ",
            round(
                cor(
                    WT_data_Nab3_Sensitive_genes$Avg_Q_IP_ANTISense,
                    WT_data_Nab3_Sensitive_genes$log2FoldChange,
                    use = "pairwise.complete.obs"
                ),
                4
            )
        ),
        x = 0.5,
        y = 0.93,
        hjust = 0,
        gp = gpar(col = '#D37538', fontsize = 11, fontface = "bold")
    )
)

ggplot2::ggplot(data = WT_data) + 
    ggplot2::geom_point(
        mapping = aes(y = log2FoldChange, x= Avg_Q_IP_ANTISense),
        alpha = 2/10,
        size = 1
    ) +
    ggplot2::scale_x_continuous(
        trans = log2_trans(),
        breaks = trans_breaks("log2", function(x) 2^x),
        labels = trans_format("log2", math_format(2^.x))) +
    ggplot2::theme_bw() +
    ggplot2::annotation_custom(grob7)+
    ggplot2::annotation_custom(grob8)+
    ggplot2::geom_point(data = WT_data_Nab3_Sensitive_genes, 
             aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense), 
             color = '#D37538',
             size = 1) +
    ggplot2::geom_smooth(
        data = WT_data,
        aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense),
        method = lm,
        se = TRUE,
        color = 'black'
    ) +
    ggplot2::geom_smooth(
        data = WT_data_Nab3_Sensitive_genes,
        aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense),
        method = lm,
        se = TRUE,
        color ='#D37538'
    )
```

#graph it again 
```{r}
grob9 <- grid::grobTree(
    grid::textGrob(
        paste(
            "Pearson Correlation :",
            round(
                cor(
                    WT_data_functional_AS$Avg_Q_IP_ANTISense,
                    WT_data_functional_AS$log2FoldChange,
                    use = "pairwise.complete.obs"
                ),
                4
            )
        ),
        x = 0.5,
        y = 0.93,
        hjust = 0,
        gp = grid::gpar(col = 'red', fontsize = 11, fontface = "bold")
    )
)


ggplot2::ggplot(data = WT_data) + 
    ggplot2::geom_point(mapping = aes(y= log2FoldChange, x= Avg_Q_IP_ANTISense), alpha = 2/10, size = 1) +
    ggplot2::scale_x_continuous(
        trans = log2_trans(),
        breaks = trans_breaks("log2", function(x) 2^x),
        labels = trans_format("log2", math_format(2^.x))
    ) +
    ggplot2::theme_bw()+
    ggplot2::annotation_custom(grob7)+
    ggplot2::annotation_custom(grob9)+
    ggplot2::geom_point(
        data = WT_data_functional_AS, 
        aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense), 
        color ='red',
        size = 1
    ) +
    ggplot2::geom_smooth(
        data = WT_data,
        aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense),
        method = lm,
        se = TRUE,
        color='black'
    ) +
    ggplot2::geom_smooth(
        data = WT_data_functional_AS,
        aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense),
        method = lm,
        se = TRUE,
        color = 'red'
    )
```

#all on one. busy, very hard to look at. 
```{r}
ggplot2::ggplot(data = WT_data) + 
    ggplot2::geom_point(mapping = aes(y= log2FoldChange, x= Avg_Q_IP_ANTISense), alpha = 2/10, size = 1) +
    ggplot2::scale_x_continuous(
        trans = log2_trans(),
        breaks = trans_breaks("log2", function(x) 2^x),
        labels = trans_format("log2", math_format(2^.x))
    ) +
    ggplot2::theme_bw()+
    ggplot2::geom_point(
        data = WT_data_Nab3_Sensitive_genes, 
        aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense), 
        color = '#D37538',
        size = 1
    ) +
    ggplot2::geom_point(
        data = WT_data_functional_AS, 
        aes(y = log2FoldChange, x = Avg_Q_IP_ANTISense), 
        color = 'red',
        size = 1
    )
```

- - - -
- - - - - - - - - - - - - - - - diff --git a/results/2022-1025/notebook.md b/results/2022-1025/notebook.md deleted file mode 100644 index 55a60c3..0000000 --- a/results/2022-1025/notebook.md +++ /dev/null @@ -1,1976 +0,0 @@ - -# 2022-1025-1101 -
-Table of contents - - -1. [2022-1025](#2022-1025) - 1. [E-mail: "Additional Nab3 Analysis"](#e-mail-additional-nab3-analysis) - 1. [File](#file) - 1. [Contents](#contents) - 1. [Working through the "Five things to try out/work on" in `notebook.md`](#working-through-the-five-things-to-try-outwork-on-in-notebookmd) - 1. [Working on the bullet "Test the genome-guided bam approach to `Trinity`..."](#working-on-the-bullet-test-the-genome-guided-bam-approach-to-trinity) - 1. [Snippets, etc. from searching the `Trinity Google Group`](#snippets-etc-from-searching-the-trinity-google-group) - 1. [Have searched for term "Jaccard"](#have-searched-for-term-jaccard) - 1. ["Genome-guided assembly questions"](#genome-guided-assembly-questions) - 1. [Have searched for the term "antisense"](#have-searched-for-the-term-antisense) - 1. ["genome guided strand specific assembly"](#genome-guided-strand-specific-assembly) - 1. ["filtering 'fake' antisense and overly similar sequences" by Brian Haas](#filtering-fake-antisense-and-overly-similar-sequences-by-brian-haas) - 1. ["evaulating strand-specificity"](#evaulating-strand-specificity) - 1. [Important links, etc.](#important-links-etc) - 1. [Check that libraries are indeed FR and not RF](#check-that-libraries-are-indeed-fr-and-not-rf) - 1. [Miscellaneous](#miscellaneous) - 1. [Notes from meeting with Alison and Toshi](#notes-from-meeting-with-alison-and-toshi) - 1. [Notes from meeting with Alison to discuss the `Trinity` work](#notes-from-meeting-with-alison-to-discuss-the-trinity-work) - 1. [Two things to try out](#two-things-to-try-out) -1. [2022-1026](#2022-1026) - 1. [E-mail: "Some R code"](#e-mail-some-r-code) - 1. [File](#file-1) - 1. [Contents](#contents-1) - 1. [Creation of a combined reference genome](#creation-of-a-combined-reference-genome) - 1. [1. The `fasta` for *Saccharomyces 20 S narnavirus* can be obtained from the Saccharomyces Genome Database \(SGD\)](#1-the-fasta-for-saccharomyces-20-s-narnavirus-can-be-obtained-from-the-saccharomyces-genome-database-sgd) - 1. [2. Go ahead and grab the other *S. cerevisiae* virus sequences available on SGD](#2-go-ahead-and-grab-the-other-s-cerevisiae-virus-sequences-available-on-sgd) - 1. [3. Now, get the genome `fasta` for *S. cerevisiae* from Ensembl release 108](#3-now-get-the-genome-fasta-for-s-cerevisiae-from-ensembl-release-108) - 1. [4. Now, get the genome `fasta` for *K. lactis*](#4-now-get-the-genome-fasta-for-k-lactis) - 1. [5. Clean up the headers for the 20S narnavirus, *S. cerevisisae*, and *K. lactis*](#5-clean-up-the-headers-for-the-20s-narnavirus-s-cerevisisae-and-k-lactis) - 1. [Concatenate the *S. cerevisiae*, *K. lactis*, and *S20* genomes](#concatenate-the-s-cerevisiae-k-lactis-and-s20-genomes) - 1. [Chromosome contents of `combined_SC_KL_20S.fasta`:](#chromosome-contents-of-combined_sc_kl_20sfasta) - 1. [Create `Bowtie 2` indices](#create-bowtie-2-indices) -1. [2022-1027-1028](#2022-1027-1028) - 1. [Continued work with `how_are_we_stranded_here`](#continued-work-with-how_are_we_stranded_here) - 1. [Items to work through `#TODO`](#items-to-work-through-todo) - 1. [Downsampling `fastq` files](#downsampling-fastq-files) - 1. [Stepping through each line](#stepping-through-each-line) - 1. [Will piping to threaded `samtools sort` work?](#will-piping-to-threaded-samtools-sort-work) - 1. [`samtools sort` number of threads in reading phase #891](#samtools-sort-number-of-threads-in-reading-phase-891) - 1. [`bernt-matthias` commented on Jul 11, 2018](#bernt-matthias-commented-on-jul-11-2018) - 1. [`jkbonfield` commented on Jul 11, 2018](#jkbonfield-commented-on-jul-11-2018) - 1. [`bernt-matthias` commented on Jul 11, 2018](#bernt-matthias-commented-on-jul-11-2018-1) - 1. [`jkbonfield` commented on Jul 11, 2018](#jkbonfield-commented-on-jul-11-2018-1) - 1. [My thoughts, 2022-1028](#my-thoughts-2022-1028) - 1. [Stepping through each line](#stepping-through-each-line-1) - 1. [Stepping through `split_bam_by_species.sh`](#stepping-through-split_bam_by_speciessh) - 1. [Miscellaneous tab to remember](#miscellaneous-tab-to-remember) -1. [2022-1031](#2022-1031) - 1. [`#NOTE`](#note) - 1. [`#TODO`](#todo) -1. [2022-1101](#2022-1101) - - -
-
- - -# 2022-1025 - -## E-mail: "Additional Nab3 Analysis" -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Date: Monday, October 24, 2022 at 11:34 PM -To: [Tsukiyama, Toshio](ttsukiya@fredhutch.org) -Cc: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: Additional Nab3 Analysis - - -### File -- `more analysis.pptx` - - -### Contents -Hi Toshi - - -You have seen a lot of the analysis in the attached but there's some new stuff too, as well as what I am thinking of doing next. I am happy with what I am seeing so far. - -Kris - I will send you the code related to this analysis in the next few days. I want to get it organized and commented first. - -Alison -
-
- - -## Working through the "Five things to try out/work on" in `notebook.md` -...("Going over Trinity assessments with Alison") - -### Working on the bullet "Test the genome-guided bam approach to `Trinity`..." -...versus the fastq approach - -#### Snippets, etc. from searching the [`Trinity Google Group`](https://groups.google.com/g/trinityrnaseq-users) - -##### Have searched for term "Jaccard" - -###### ["Genome-guided assembly questions"](https://groups.google.com/g/trinityrnaseq-users/c/HV-JK9xiC8E/m/tVyPJzpYBgAJ) -Post #2 -```txt -... - -For drosophila, the `--jaccard_clip` can help. If you have strand-specific rna-seq, then I wouldn't bother, since the strand-specific rna-seq already solves a lot of the problems that jaccard-clip is meant to mitigate. - -... -``` - -Post #3 -```txt -Brian, - -Is it your recommendation to never use jaccard-clip with strand-specific RNA-seq? Or would you still use it with *very dense genomes like yeast*? - -thanks, --Will -``` - -Post #4 -```txt -With very dense genomes, you'll always need it. For moderately-dense genomes, you can probably get away w/out it if you have strand-specific data. - -Jaccard clip is by no means a 'cure' for the issue.... it just mitigates it. We still need a more effective approach for it ... someday. - -\~b -``` - - -##### Have searched for the term "antisense" - -###### ["genome guided strand specific assembly"](https://groups.google.com/g/trinityrnaseq-users/c/DVnpAnhdNeA/m/RM5oT_PXAAAJ) -Post #6 -```txt -The process we support is to just give it a single coordinate sorted bam file, indicate the `--SS_lib_type` mode and let Trinity do the transcribed strand based separation of the alignments. -``` - - - -###### ["filtering 'fake' antisense and overly similar sequences" by Brian Haas](https://groups.google.com/g/trinityrnaseq-users/c/2Fe5dZu7FnY/m/r69jVJfSBAAJ) -```txt -Hi all, - -Attached is a little script you can drop into trinityrnaseq/util/misc and use (along with having cdhit installed) to filter out transcripts that might derive from 'fake' antisense in the context of > strand-specific rna-seq, or to weed out overly similar sequences that tend to be shorter and lowly expressed (possible artifacts). - -It'll go into the next release as an option for additional filtering. - -It's only been used lightly so far by myself, so let me know if you encounter any weirdness / bugs. - -Run like so: - filter_similar_seqs_expr_and_strand_aware.pl \ - --transcripts_fasta Trinity.fasta \ - --expr_matrix isoforms.expr.matrix \ - > Trinity.filtered.fasta -``` - - -###### ["evaulating strand-specificity"](https://groups.google.com/g/trinityrnaseq-users/c/Gi8_f_kXxh4/m/yBGD9RG3BAAJ) -Post #2 -- on removing the approximately 1% of fake antisense reads from strand-specific library preparation, sequencing, etc. -- I guess this pertains to `filter_similar_seqs_expr_and_strand_aware.pl` in `trinityrnaseq/util/misc` mentioned immediately above -```txt -Hi Sjannie, - -If it's a deeply sequenced data set, then I expect you'll see more of a spread, and it's because the strand-specificity is generally about 99% effective. If you sequence deep enough, that remaining 1% can accumulate sufficient reads to have Trinity assemble the same transcript in the 'antisense' orientation in addition to the more dominantly supported sense orientation. So, you end up with some artificial lowly expressed antisense transcript assemblies in the output, and these are presumably the transcripts that are shifting the distribution here. They'll be lowly expressed in when quantified using a strand-specific quantification method. - -I don't have a canned solution for dealing with this, mainly because I haven't needed to. I just tend to ignore the lowly expressed contigs, as they don't tend to show up as significant in any downstream assay of DE, and are just passengers in the study. But, I can imagine a simple protocol for cleaning them up, and we could implement something for it for the next release. It would involve two steps (after having a strand-specific assembly and an expression matrix): - 1. running cdhit-est to cluster at high stringency (high identity and high percent length overlap of the shorter transcript), and - 2. excluding entries in a cdhit cluster that have an expression value below some threshold of the dominantly expressed transcript and having a transcriptional orientation that's opposite from the dominantly expressed transcript (antisense). - -You could assume an \~1% 'fake' antisense rate given what we know about the experimental protocols. - -\~brian -``` - - -#### Important links, etc. -- ["De novo RNA-Seq Assembly, Annotation, and Analysis Using Trinity and Trinotate," part of the "Informatics for RNA-Seq Analysis" Workshop](https://bioinformaticsdotca.github.io/rnaseq_2017_tutorial6) -- ["Informatics for RNA-Seq Analysis" Workshop home page](https://bioinformaticsdotca.github.io/rnaseq_2017) -- ["Transcriptome Assembly Quality Assessment" by Brian Haas, co-author and maintainer of Trinity](https://github.com/trinityrnaseq/trinityrnaseq/wiki/Transcriptome-Assembly-Quality-Assessment) - - -#### Check that libraries are indeed FR and not RF -- ["Strandness in RNASeq" by Hong Zheng, 2017-0817](https://littlebitofdata.com/en/2017/08/strandness_in_rnaseq/) -- ["signalbash/how_are_we_stranded_here"](https://github.com/signalbash/how_are_we_stranded_here) -```bash -#!/bin/bash -#DONTRUN - -# Install how_are_we_stranded_here in its own environment on rhino/gizmo ----- - -#NOTE Installation is finnicky; here's how I ultimately ended up doing it... -# Building on advice at this link: -#+ github.com/signalbash/how_are_we_stranded_here/issues/13 -mamba create -n strandedness_env -conda activate strandedness_env - -mamba install -c conda-forge python=3.6.15 -mamba install -c conda-forge numpy=1.10 -mamba install -c bioconda kallisto=0.44.0 -mamba install -c bioconda bx-python # python-lzo, a necessary package, is installed alognside bx-python -mamba install -c bioconda rseqc -mamba install -c bioconda how_are_we_stranded_here # pandas, a necessary package, is installed alongside how_are_we_stranded_here - - -# Download files needed by how_are_we_stranded_here -------------------------- -# These are (a) a genome-annotation gtf file and (b) a fasta of transcript -#+ sequences (cDNA), for S. cerevisiae -cd "${HOME}/genomes/sacCer3" -mkdir -p Ensembl/108 -cd mkdir -p Ensembl/108 - -# Get the gtf file(s) -wget https://ftp.ensembl.org/pub/release-108/gtf/saccharomyces_cerevisiae/CHECKSUMS -wget https://ftp.ensembl.org/pub/release-108/gtf/saccharomyces_cerevisiae/README -wget https://ftp.ensembl.org/pub/release-108/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.R64-1-1.108.abinitio.gtf.gz -wget https://ftp.ensembl.org/pub/release-108/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.R64-1-1.108.gtf.gz - -mkdir gtf -mv CHECKSUMS README *.gtf.gz gtf/ - -# Get the transcripts (cdna) file -wget https://ftp.ensembl.org/pub/release-108/fasta/saccharomyces_cerevisiae/cdna/CHECKSUMS -wget https://ftp.ensembl.org/pub/release-108/fasta/saccharomyces_cerevisiae/cdna/README -wget https://ftp.ensembl.org/pub/release-108/fasta/saccharomyces_cerevisiae/cdna/Saccharomyces_cerevisiae.R64-1-1.cdna.all.fa.gz - -mkdir cDNA -mv CHECKSUMS README *.fa.gz cDNA/ - - -# Now, set up vartiables and run how_are_we_stranded_here -------------------- -cd "${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025" - -pa_fastq="${HOME}/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_157_G1_IN" -pa_gtf_cDNA="${HOME}/genomes/sacCer3/Ensembl/108" - -check_strandedness \ - --gtf "${pa_gtf_cDNA}/gtf/Saccharomyces_cerevisiae.R64-1-1.108.gtf" \ - --transcripts "${pa_gtf_cDNA}/cDNA/Saccharomyces_cerevisiae.R64-1-1.cdna.all.fa" \ - --reads_1 "${pa_fastq}/5781_G1_IN_GTCGAGAA_L001_R1_001.fastq" \ - --reads_2 "${pa_fastq}/5781_G1_IN_GTCGAGAA_L001_R2_001.fastq" -``` - -Output of `how-are-we-stranded-here` printed to screen -```txt -Results stored in: stranded_test_5781_G1_IN_GTCGAGAA_L001_R1_001 -converting gtf to bed -Checking if fasta headers and bed file transcript_ids match... -OK! -generating kallisto index - -[build] loading fasta file /home/kalavatt/genomes/sacCer3/Ensembl/108/cDNA/Saccharomyces_cerevisiae.R64-1-1.cdna.all.fa -[build] k-mer length: 31 -[build] counting k-mers ... done. -[build] building target de Bruijn graph ... done -[build] creating equivalence classes ... done -[build] target de Bruijn graph has 11489 contigs and contains 8243691 k-mers - -creating fastq files with first 200000 reads -quantifying with kallisto - -[quant] fragment length distribution will be estimated from the data -[index] k-mer length: 31 -[index] number of targets: 6,612 -[index] number of k-mers: 8,243,691 -[index] number of equivalence classes: 8,064 -Warning: 515 transcripts were defined in GTF file, but not in the index -[quant] running in paired-end mode -[quant] will process pair 1: stranded_test_5781_G1_IN_GTCGAGAA_L001_R1_001/5781_G1_IN_GTCGAGAA_L001_R1_001_sample.fq - stranded_test_5781_G1_IN_GTCGAGAA_L001_R1_001/5781_G1_IN_GTCGAGAA_L001_R2_001_sample.fq -[quant] finding pseudoalignments for the reads ... done -[quant] processed 200,000 reads, 108,480 reads pseudoaligned -[quant] estimated average fragment length: 229.667 -[ em] quantifying the abundances ... done -[ em] the Expectation-Maximization algorithm ran for 270 rounds -[ bam] writing pseudoalignments to BAM format .. done -[ bam] sorting BAM files .. done -[ bam] indexing BAM file .. done - -checking strandedness -Reading reference gene model stranded_test_5781_G1_IN_GTCGAGAA_L001_R1_001/Saccharomyces_cerevisiae.R64-1-1.108.bed ... Done -Loading SAM/BAM file ... Finished -Total 177529 usable reads were sampled -This is PairEnd Data -Fraction of reads failed to determine: 0.0824 -Fraction of reads explained by "1++,1--,2+-,2-+": 0.8990 (98.0% of explainable reads) -Fraction of reads explained by "1+-,1-+,2++,2--": 0.0186 (2.0% of explainable reads) -Over 90% of reads explained by "1 ++,1--,2+-,2-+" -Data is likely FR/fr-secondstrand -``` -Sure enough, the library is likely to be `FR`, consistent with what Alison is invoking in `Trinity` -
-
- - -## Miscellaneous -`#TODO` Look into [these Google search results for "spike-in normalization eli5"](https://www.google.com/search?q=spike-in+normalization+eli5&oq=spike-in+normalization+eli5&aqs=chrome..69i57j0i546l2.5874j0j7&sourceid=chrome&ie=UTF-8) -`#TODO` Look into [these Google search results for "s cerevisiae blacklist"](https://www.google.com/search?q=s+cerevisiae+blacklist&oq=s+cerevisiae+blacklist&aqs=chrome..69i57j69i64l3.4473j0j4&sourceid=chrome&ie=UTF-8) -
-
- - -## Notes from meeting with Alison and Toshi -(...with regards to `pptx` in e-mail "Additional Nab3 Analysis," sent 2022-1024) -- `#TODO` A more formal, polished implementation of the calculation of TPM (e.g., see *Slide 1*), building on what Alison did in `Analysis_sense_antisense.Rmd` (see directory `results/2022-1025/Rmd`) -- `#QUESTION` What does "gated at 14 TPM" mean? - - `#ANSWER` Top 20% expressed antisense transcripts upon depletion of *Nab3* - - If we do this analysis, per Toshi, we need to show... - - Suggestion from Alison: Maybe stringent; try top 10%, top 30% - - Suggestion from Toshi that Alison is going to move forward with: Try different quintiles; "it's possible at a certain level that fold change doesn't matter" -- Per Toshi, should not care about very lowly expressed transcripts (`#QUESTION` mRNA? AS? All?) because, `#REMEMBER`, our data are very, very deeply sequenced - - The yeast genome is much, much smaller than mammalian genomes -- `#QUESTION` Is it the absolute level or relative increase of antisense transcription that matters? - - Toshi suspects that absolute levels are the most important, per Alison, "for function" - - If no increase from parent to depletion (child), then it may not be functional or, at least, we won't be to see it from this perspective -- Alison is calculation a "representation factor" statistic for set overlaps (e.g., Venn diagrams) using the web software and details here: - - [Home](http://nemates.org/MA/): Click on "Statistical significance of the overlap between two groups of genes" - - [The software](http://nemates.org/MA/progs/overlap_stats.html) - - [The details](http://nemates.org/MA/progs/representation.stats.html) `#TODO` - - `#TODO` These stats that are being generated: Are they legitimate/appropriate given the context of our analyses, the question(s) we ask? - + `#NOTE` Seem fine after reviewing the calculation -- On *Slide 2*, both sense (S) and antisense (AS) transcripts (tx) are "from nascent" -- Per Toshi, ≤20 AS tx are biologically functional for their activity, not their RNA product, in budding yeast (*Saccharomyces cerevisiae*) -- Per Toshi and Alison, may be interesting to look into the following: AS nascent versus steady-state (SS) sense in "all combinations" - + `#TODO` Follow up on what they're talking about here -- *Slides 2 and 3*: Many of the AS tx that are up, corresponding S does not go down: `#QUESTION` From Toshi: Is this because there's no S to begin with? -- *Slide 4*: y-axis is S, and panel B is from a separate paper (the left panel is from Alison) - - Panel B is not Q: it's "late log" (OD 0.6 to 3.0) - - Alison depleted *Nab3*, the team behind the other paper (2013, I think?) depleted a factor that forms a dimer with Nab3, so it's expected to have a similar function -- *Slide 7* (the violin-plot slide): Shows changes in mRNA depletion -- *Slide 8* (the next violin-plot slide): Shows absolute levels of AS tx (in TPM) - - Possibilities for "activating" AS tx or "neutral and everything is coming up" - + `#TODO` Get clarification on this second part? - - Or it could be that Nab3 (which is currently depleted) would otherwise be degrading the currently upregulated mRNA (e.g., in "violins" 2 and 3) - - "Are they tandem genes" because PolII keeps going - + (`#QUESTION` I presume they're talking about something like "slip-through tx" here?) -- Question from Toshi: "How much overlap to say that S/AS overlap?" Answer from Alison: "Whatever HTSeq says" - + `#NOTE` She'll look into precisely is going on here -- Point from Toshi: It's possible that, once we annotate in a formal way (i.e., optimize the `Trinity` work), things might change quite a bit -- *Slide 11* ("Sense up, AS up") - - Is this because S was very low to begin with? - - Per Toshi, it's hard to imagine both strands robustly transcribed -- `#QUESTION` from Toshi: Should we pause to get a "correct annotation" and then do "serious analyses?" - - Alison wants to continue with the current work, which she and Toshi consider "rough draft analyses" - - Alison: "It's interesting to play around with." - - However, going to eventually need to redo everything with proper annotations - - The main findings are unlikely change -- `#QUESTION` If AS is increased, then are you more likely to have S up, down, or unchanged? -- Some next steps for Alison - - Re-do "bin analyses" (violin plot slides) with AS "bins" (categories, really) - - Correlation analyses between nascent and steady -
-
- - -## Notes from meeting with Alison to discuss the `Trinity` work -- `#QUESTION` The `fastq` files in `${HOME}/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot`, do I need to do anything with them (e.g., regarding the *K. lactis* spike-in and/or 20 S) prior to using them as input with `Trinity`? - - Can try to give the fastq (contains *K. lactis* and 20 S information in addition to *S. cerevisiae* information) - - The two species are largely conserved (if I copied down this note correctly), but there is some notable divergence between the two - + `#TODO` Follow up with Alison on this - - Alison mentioned a genome duplication event: Did it occur prior to the arising of the two species? - + `#TODO` Follow up with Alison on this - - Idea worked out with Alison: Create a combined genome comprised of *S. cerevisiae*, *K. lactis*, and 20 S - - Align to it - - Filter out reads aligned to *K. lactis* and 20 S - - Use the remaining reads, aligned to *S. cerevisiae* as `bam` input to `Trinity` - - Could convert from `.bam` to `.fastq` and split by chromosome too... - + `#TODO` Think about this... -- `#QUESTION` Are there *K. lactis* reads in these `fastq` files, in addition to *S. cerevisiae* reads? `#ANSWER` Yes, and 20 S reads too -- `#QUESTION` ...for the `fastq` and `bam` files prior to using them as input for `deepTools bamCoverage`? -- `#QUESTION` Alison is calling `Trinity` with `--SS_lib_type FR`; however, most strand-specific libraries are generated with the dUTP method, which means they need `--SS_lib_type RF`; therefore, are we sure that `--SS_lib_type FR` is correct here? `#ANSWER` Yes, see the results of your work with `how_are_we_stranded_here` in `results/2022-1025/readme.md` - - -### Two things to try out -1. `#TODO ( )` A "better way" to calculate TPM (see "Notes from meeting with Alison and Toshi" above) -2. `#TODO ( )` Create a combined genome comprised of *S. cerevisiae*, *K. lactis*, and 20 S (more details immediately above); then, select the *S. cerevisiae* alignments for downstream analyses -
-
- - -# 2022-1026 - -## E-mail: "Some R code" - -### File -- `Analysis_sense_antisense.Rmd` -- `AS_mRNA_Nascent_Nab3.txt` -- `AS_TPM.txt` -- `deletionmeta_AS.txt` -- `deletionmeta.txt` -- `mRNA_Nascent_Nab3.txt` -- `res_order_AS_Diff_expression.txt` -- `WT_Q_G1_TPM.txt` - - -### Contents -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Date: Tuesday, October 25, 2022 at 6:56 PM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: Some R code - -I have attached the .Rmd that does most all the analysis we went over this afternoon with Toshi. I have also attached the 7 .txt files it needs to read in to work. Let me know if you have any questions or issues. - -Alison -
-
- - -## Creation of a combined reference genome -...comprised of *S. cerevisiae*, *K. lactis*, and 20 S narnavirus - - -### 1. The `fasta` for *Saccharomyces 20 S narnavirus* can be obtained from the [Saccharomyces Genome Database (SGD)](https://www.yeastgenome.org/) -- In the search bar, input "20 S" -- The second result (October 26, 2022) is "20S_RNA_Narnavirus_1997_NC004051.fsa" -- Downloads for the `fasta` file and `README` are available; use the links to download the files - -```bash -#!/bin/bash -#DONTRUN - -grabnode - -# Saccharomyces cerevisiae narnavirus 20S RNA -#+ yeastgenome.org/search?q=20s&is_quick=true -cd "${HOME}/genomes" -mkdir -p 20S_RNA_Narnavirus_1997_NC004051 && cd 20S_RNA_Narnavirus_1997_NC004051 - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000209166/20S_RNA_Narnavirus_1997_NC004051.fsa \ - > 20S_RNA_Narnavirus_1997_NC004051.fasta - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000208074/yeast_viruses.README \ - > yeast_viruses.README - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000209349/20S_RNA_Narnavirus_1997_NC004051.gb \ - > 20S_RNA_Narnavirus_1997_NC004051.gb - -``` - - -### 2. Go ahead and grab the other *S. cerevisiae* virus sequences available on [SGD](https://www.yeastgenome.org/) - -```bash -#!/bin/bash -#DONTRUN - -# Saccharomyces cerevisiae virus L-A (L1) -#+ yeastgenome.org/search?q=L-A_L1_2002_NC003745&is_quick=true -cd "${HOME}/genomes" -mkdir -p L-A_L1_2002_NC003745 && cd L-A_L1_2002_NC003745 - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000209169/L-A_L1_2002_NC003745.fsa \ - > L-A_L1_2002_NC003745.fasta - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000208074/yeast_viruses.README \ - > yeast_viruses.README - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000209352/L-A_L1_2002_NC003745.gb \ - > L-A_L1_2002_NC003745.gb - -cd .. - -# Killer virus of S. cerevisiae -#+ yeastgenome.org/search?q=killer&is_quick=true -mkdir -p KillerVirusM1_1996_NC001782 && cd KillerVirusM1_1996_NC001782 - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000209168/KillerVirusM1_1996_NC001782.fsa \ - > KillerVirusM1_1996_NC001782.fasta - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000208074/yeast_viruses.README \ - > yeast_viruses.README - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000209351/KillerVirusM1_1996_NC001782.gb \ - > KillerVirusM1_1996_NC001782.gb - -cd .. - -# Saccharomyces cerevisiae narnavirus 23S RNA -#+ yeastgenome.org/search?q=23S&is_quick=true -mkdir -p 23S_RNA_Narnavirus_1997_NC004050 && cd 23S_RNA_Narnavirus_1997_NC004050 - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000209167/23S_RNA_Narnavirus_1997_NC004050.fsa \ - > 23S_RNA_Narnavirus_1997_NC004050.fasta \ - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000208074/yeast_viruses.README \ - > yeast_viruses.README \ - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000209350/23S_RNA_Narnavirus_1997_NC004050.gb \ - > 23S_RNA_Narnavirus_1997_NC004050.gb \ - -cd .. - -# Saccharomyces cerevisiae virus L-BC -#+ yeastgenome.org/search?q=L-BC&is_quick=true -mkdir -p L-BC_La_1993_NC001641 && cd L-BC_La_1993_NC001641 - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000209170/L-BC_La_1993_NC001641.fsa \ - > L-BC_La_1993_NC001641.fasta - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000208074/yeast_viruses.README \ - > yeast_viruses.README - -curl \ - https://sgd-prod-upload.s3.amazonaws.com/S000209353/L-BC_La_1993_NC001641.gb \ - > L-BC_La_1993_NC001641.gb - -cd .. -``` - - -### 3. Now, get the genome `fasta` for *S. cerevisiae* from [Ensembl release 108](https://ftp.ensembl.org/pub/release-108/fasta/saccharomyces_cerevisiae/) -```bash -#!/bin/bash -#DONTRUN - -cd "${HOME}/genomes/sacCer3" || echo "cd failed. Check on this." - -alias .,="ls -lhaFG" -., -``` - -Results: -```txt -total 19M -drwxrwx--- 4 kalavatt 105 Oct 26 13:15 ./ -drwxrwx--- 8 kalavatt 247 Oct 26 13:08 ../ -drwxrwx--- 3 kalavatt 21 Oct 25 16:19 Ensembl/ -drwxrwx--- 3 kalavatt 628 Oct 24 15:07 GMAP/ --rw-rw---- 1 kalavatt 2.9M Oct 24 14:48 sacCer3.2bit --rw-rw---- 1 kalavatt 12M Oct 24 14:52 sacCer3.fa -``` - -Looks we have a `fasta` already, `sacCer3.fa`, from converting the `2bit` to `fasta` with `twoBitToFa`. Technically, these files should be with the `Ensembl/108/` subdirectory, so go ahead and move them into there. Also, go ahead and rename the file to `sacCer3.fasta`, and grab the corresponding `README` for the file. -```bash -#!/bin/bash -#DONTRUN - -mv sacCer.* Ensembl/108/ - -cd Ensembl/108/ - -mv sacCer3.fa sacCer3.fasta - -# Organize things a bit... -mkdir -p 2bit_fasta -mv *.2bit *.fasta 2bit_fasta/ -``` - -The `2bit` was obtained from [this UCSC goldenPath link](https://hgdownload.soe.ucsc.edu/goldenPath/sacCer3/bigZips); thus, get the `README` from this spot too. Also, per the `README`, the `2bit` is dated **2011-08-24**. This is quite old. -```bash -#!/bin/bash -#DONTRUN - -cd 2bit_fasta || echo "cd failed. Check on this." - -vi README # Then, copy in the text from the above UCSC goldenPath link -curl \ - https://hgdownload.soe.ucsc.edu/goldenPath/sacCer3/bigZips/md5sum.txt \ - > md5sum.txt -``` - -Is there an updated genome fasta available from [Ensembl release 108](https://ftp.ensembl.org/pub/release-108/fasta/saccharomyces_cerevisiae/)? Let's check. -```bash -#!/bin/bash -#DONTRUN - -# Move 2bit_fasta to a new, non-Ensembl-release-108 directory for clear -#+ indication of its status as an older assembly -cd "${HOME}/genomes/sacCer3" || echo "cd failed. Check on this." - -mkdir -p UCSC -mv Ensembl/108/2bit_fasta ./UCSC/ -# OK, this is better... - -cd Ensembl/108 -mkdir -p DNA && cd DNA - -# It looks like 'Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.gz' is the -#+ file we want -curl \ - https://ftp.ensembl.org/pub/release-108/fasta/saccharomyces_cerevisiae/dna/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.gz \ - > Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.gz - -curl \ - https://ftp.ensembl.org/pub/release-108/fasta/saccharomyces_cerevisiae/dna/README \ - > README - -curl \ - https://ftp.ensembl.org/pub/release-108/fasta/saccharomyces_cerevisiae/dna/CHECKSUMS \ - > CHECKSUMS - -zcat Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.gz | head -5 -``` - -Results: -```txt ->I dna:chromosome chromosome:R64-1-1:I:1:230218:1 REF -CCACACCACACCCACACACCCACACACCACACCACACACCACACCACACCCACACACACA -CATCCTAACACTACCCTAACACAGCCCTAATCTAACCCTGGCCAACCTGTCTCTCAACTT -ACCCTCCATTACCCTGCCTCCACTCGTTACCCTGTCCCATTCAACCATACCACTCCGAAC -CACCATCCATCCCTCTACTTACTACCACTCACCCACCGTTACCCTCCAATTACCCATATC -``` -Note how the name of the chromosome is 'I' and not 'chrI' as it is in the UCSC `2bit`/`fasta`. `#NOTE` I may need to make a new version of the `*.toplevel.fa.gz` file with cleaned up, simplified chromosome names. - -List all of the chromosome names in the Ensembl `fasta` file: -```bash -#!/bin/bash -#DONTRUN - -fasta="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.gz" -zgrep "^>" "${fasta}" -``` - -Results: -```txt ->I dna:chromosome chromosome:R64-1-1:I:1:230218:1 REF ->II dna:chromosome chromosome:R64-1-1:II:1:813184:1 REF ->III dna:chromosome chromosome:R64-1-1:III:1:316620:1 REF ->IV dna:chromosome chromosome:R64-1-1:IV:1:1531933:1 REF ->V dna:chromosome chromosome:R64-1-1:V:1:576874:1 REF ->VI dna:chromosome chromosome:R64-1-1:VI:1:270161:1 REF ->VII dna:chromosome chromosome:R64-1-1:VII:1:1090940:1 REF ->VIII dna:chromosome chromosome:R64-1-1:VIII:1:562643:1 REF ->IX dna:chromosome chromosome:R64-1-1:IX:1:439888:1 REF ->X dna:chromosome chromosome:R64-1-1:X:1:745751:1 REF ->XI dna:chromosome chromosome:R64-1-1:XI:1:666816:1 REF ->XII dna:chromosome chromosome:R64-1-1:XII:1:1078177:1 REF ->XIII dna:chromosome chromosome:R64-1-1:XIII:1:924431:1 REF ->XIV dna:chromosome chromosome:R64-1-1:XIV:1:784333:1 REF ->XV dna:chromosome chromosome:R64-1-1:XV:1:1091291:1 REF ->XVI dna:chromosome chromosome:R64-1-1:XVI:1:948066:1 REF ->Mito dna:chromosome chromosome:R64-1-1:Mito:1:85779:1 REF -``` - -For thoroughness, let's go ahead and get `README` and `CHECKSUMS` files for everything else we've downloaded from Ensembl in the last couple of days: -```bash -#!/bin/bash -#DONTRUN - -cd "${HOME}/genomes/sacCer3/Ensembl/108" -alias .,s="ls -lhaFG ./*" -.,s -``` - -Results: -```txt -./cDNA: -total 12M -drwxrwx--- 2 kalavatt 178 Oct 25 17:12 ./ -drwxrwx--- 5 kalavatt 64 Oct 26 13:44 ../ --rw-rw---- 1 kalavatt 79 Sep 2 07:04 CHECKSUMS --rw-rw---- 1 kalavatt 2.5K Jul 25 10:21 README --rw-rw---- 1 kalavatt 12M Oct 25 17:12 Saccharomyces_cerevisiae.R64-1-1.cdna.all.fa --rw-rw---- 1 kalavatt 3.7M Jul 25 10:21 Saccharomyces_cerevisiae.R64-1-1.cdna.all.fa.gz - -./DNA: -total 4.6M -drwxrwx--- 2 kalavatt 120 Oct 26 13:46 ./ -drwxrwx--- 5 kalavatt 64 Oct 26 13:44 ../ --rw-rw---- 1 kalavatt 3.8K Oct 26 13:46 CHECKSUMS --rw-rw---- 1 kalavatt 4.9K Oct 26 13:46 README --rw-rw---- 1 kalavatt 3.7M Oct 26 13:46 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.gz - -./gtf: -total 14M -drwxrwx--- 2 kalavatt 240 Oct 25 17:12 ./ -drwxrwx--- 5 kalavatt 64 Oct 26 13:44 ../ --rw-rw---- 1 kalavatt 140 Aug 11 14:07 CHECKSUMS --rw-rw---- 1 kalavatt 9.2K Jul 29 08:56 README --rw-rw---- 1 kalavatt 116 Jul 29 08:56 Saccharomyces_cerevisiae.R64-1-1.108.abinitio.gtf.gz --rw-rw---- 1 kalavatt 10M Oct 25 17:12 Saccharomyces_cerevisiae.R64-1-1.108.gtf --rw-rw---- 1 kalavatt 582K Jul 29 08:56 Saccharomyces_cerevisiae.R64-1-1.108.gtf.gz -``` -Looks like I already did. Nice. - - -### 4. Now, get the genome `fasta` for *K. lactis* -...from what appears to be a special version of Ensembl for fungi, e.g., [here](https://fungi.ensembl.org) and a specific page for [*K. lactis*](https://fungi.ensembl.org/Kluyveromyces_lactis_gca_000002515/Info/Index) - -Click the link ["Download DNA sequence"](http://ftp.ensemblgenomes.org/pub/fungi/release-55/fasta/fungi_ascomycota1_collection/kluyveromyces_lactis_gca_000002515/dna/). Site contents: -```txt -[ICO] Name Last modified Size Description -[PARENTDIR] Parent Directory - -CHECKSUMS 2022-09-21 11:02 1.7K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.chromosome.A.fa.gz 2022-08-16 05:28 324K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.chromosome.B.fa.gz 2022-08-16 05:28 403K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.chromosome.C.fa.gz 2022-08-16 05:28 535K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.chromosome.D.fa.gz 2022-08-16 05:28 520K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.chromosome.E.fa.gz 2022-08-16 05:28 681K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.chromosome.F.fa.gz 2022-08-16 05:28 793K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.toplevel.fa.gz 2022-08-16 05:28 3.2M -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_rm.chromosome.A.fa.gz 2022-08-16 05:28 323K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_rm.chromosome.B.fa.gz 2022-08-16 05:28 402K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_rm.chromosome.C.fa.gz 2022-08-16 05:28 534K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_rm.chromosome.D.fa.gz 2022-08-16 05:28 520K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_rm.chromosome.E.fa.gz 2022-08-16 05:28 680K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_rm.chromosome.F.fa.gz 2022-08-16 05:28 793K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_rm.toplevel.fa.gz 2022-08-16 05:28 3.2M -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_sm.chromosome.A.fa.gz 2022-08-16 05:28 324K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_sm.chromosome.B.fa.gz 2022-08-16 05:28 403K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_sm.chromosome.C.fa.gz 2022-08-16 05:29 535K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_sm.chromosome.D.fa.gz 2022-08-16 05:29 521K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_sm.chromosome.E.fa.gz 2022-08-16 05:29 682K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_sm.chromosome.F.fa.gz 2022-08-16 05:29 794K -Kluyveromyces_lactis_gca_000002515.ASM251v1.dna_sm.toplevel.fa.gz 2022-08-16 05:29 3.2M -README -``` -Cool. Looks like we need `Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.toplevel.fa.gz`, `README`, and `CHECKSUMS`: -```bash -#!/bin/bash -#DONTRUN - -cd "${HOME}/genomes/" || echo "cd failed. Check on this." -mkdir -p kluyveromyces_lactis_gca_000002515/Ensembl/55/DNA && cd kluyveromyces_lactis_gca_000002515/Ensembl/55/DNA - -curl \ - http://ftp.ensemblgenomes.org/pub/fungi/release-55/fasta/fungi_ascomycota1_collection/kluyveromyces_lactis_gca_000002515/dna/Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.toplevel.fa.gz \ - > Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.toplevel.fa.gz - -curl \ - http://ftp.ensemblgenomes.org/pub/fungi/release-55/fasta/fungi_ascomycota1_collection/kluyveromyces_lactis_gca_000002515/dna/README \ - > README - -curl \ - http://ftp.ensemblgenomes.org/pub/fungi/release-55/fasta/fungi_ascomycota1_collection/kluyveromyces_lactis_gca_000002515/dna/CHECKSUMS \ - > CHECKSUMS - -# Grab some other files too: transcripts and annotations -cd .. -mkdir -p {cDNA,gff3} -cd cDNA || echo "cd failed. Check on this." - -# Getting errors: "curl: (51) SSL: no alternative certificate subject name -#+ matches target host name 'ftp.ensemblgenomes.org'"; try running curl in -#+ "--insecure" option -curl \ - --insecure https://ftp.ensemblgenomes.org/pub/fungi/release-55/fasta/fungi_ascomycota1_collection/kluyveromyces_lactis_gca_000002515/cdna/Kluyveromyces_lactis_gca_000002515.ASM251v1.cdna.all.fa.gz \ - > Kluyveromyces_lactis_gca_000002515.ASM251v1.cdna.all.fa.gz - -curl \ - --insecure https://ftp.ensemblgenomes.org/pub/fungi/release-55/fasta/fungi_ascomycota1_collection/kluyveromyces_lactis_gca_000002515/cdna/CHECKSUMS \ - > CHECKSUMS - -curl \ - --insecure https://ftp.ensemblgenomes.org/pub/fungi/release-55/fasta/fungi_ascomycota1_collection/kluyveromyces_lactis_gca_000002515/cdna/README \ - > README - -cd ../gff3 || echo "cd failed. Check on this." - -curl \ - --insecure https://ftp.ensemblgenomes.org/pub/fungi/release-55/gff3/fungi_ascomycota1_collection/kluyveromyces_lactis_gca_000002515/Kluyveromyces_lactis_gca_000002515.ASM251v1.55.gff3.gz \ - > Kluyveromyces_lactis_gca_000002515.ASM251v1.55.gff3.gz - -curl \ - --insecure https://ftp.ensemblgenomes.org/pub/fungi/release-55/gff3/fungi_ascomycota1_collection/kluyveromyces_lactis_gca_000002515/README \ - > README - -curl \ - --insecure https://ftp.ensemblgenomes.org/pub/fungi/release-55/gff3/fungi_ascomycota1_collection/kluyveromyces_lactis_gca_000002515/CHECKSUMS \ - > CHECKSUMS - -# Let's see what the chromosomes look like in the K. lactis fasta -cd ../DNA || echo "cd failed. Check on this." - -fasta="Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.toplevel.fa.gz" -zgrep "^>" "${fasta}" -``` - -Results for chromosome names in `Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.toplevel.fa.gz`: -```txt ->A dna:chromosome chromosome:ASM251v1:A:1:1062590:1 REF ->B dna:chromosome chromosome:ASM251v1:B:1:1320834:1 REF ->C dna:chromosome chromosome:ASM251v1:C:1:1753957:1 REF ->D dna:chromosome chromosome:ASM251v1:D:1:1715506:1 REF ->E dna:chromosome chromosome:ASM251v1:E:1:2234072:1 REF ->F dna:chromosome chromosome:ASM251v1:F:1:2602197:1 REF -``` - -And what is the "chromosome name" for the 20 S narnavirus? -```bash -#!/bin/bash -#DONTRUN - -cd "${HOME}/genomes/20S_RNA_Narnavirus_1997_NC004051/" || echo "cd failed. Check on this." - -fasta="20S_RNA_Narnavirus_1997_NC004051.fasta" -zgrep "^>" "${fasta}" -``` - -`#NOTE They look fine; not pasted here` - - -### 5. Clean up the headers for the 20S narnavirus, *S. cerevisisae*, and *K. lactis* -Results for `20S_RNA_Narnavirus_1997_NC004051.fasta` -```txt ->gi|21557564|ref|NC_004051.1| Saccharomyces 20S RNA narnavirus, complete genome -``` - -Try renaming the "chromosome name" for the 20 S narnavirus -```bash -#!/bin/bash -#DONTRUN - -cd "${HOME}/genomes/20S_RNA_Narnavirus_1997_NC004051/" - -fasta="20S_RNA_Narnavirus_1997_NC004051.fasta" -awk '/^>/ {$0=$1} 1' "${fasta}" > "${fasta%.fasta}.chr-rename.fasta" -``` - -It works, but let's give the header a more informative string: -```bash -#!/bin/bash -#DONTRUN - -fasta="20S_RNA_Narnavirus_1997_NC004051.chr-rename.fasta" -cp "${fasta}" "${fasta}.bak" - -change_to=">20S" -sed -i "1s/.*/${change_to}/" "${fasta}" - -head -5 "${fasta}" -``` - -Results for `20S_RNA_Narnavirus_1997_NC004051.chr-rename.fasta` -```txt ->20S -GGGGCTGATCCCATGAAGGAACCAGTAGACTGCCGTCTTTCGACGCCAGCCGGTTTCTCGGGGACAGTCC -CCCCTCCTGGTCGCACTAAGGCGGCCAGGCCGGGAACCATCCCTGTGAGGCGTTCGCGTGGAAGCGCGTC -TGCCTTACCGGGTAAAATCTACGGTTGGAGCCGTCGACAACGGGATAGGTTCGCGATGTTGCTGTCGTCT -TTCGACGCGGCTCTCGCGGCCTACTCCGGCGTCGTCGTCTCCAGAGGTACACGCTCTCTACCGCCATCGC -``` - -Change the chromosome names (headers) for *S. cerevisiae* and *K.lactis* by removing everything after (and including) the first space -```bash -#!/bin/bash -#DONTRUN - -cd "${HOME}/genomes/sacCer3/Ensembl/108/DNA" || echo "cd failed. Check on this." - -fasta="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.gz" -gunzip < "${fasta}" > "${fasta%.gz}" -awk '/^>/ {$0=$1} 1' "${fasta%.gz}" > "${fasta%.fa.gz}.chr-rename.fasta" -rm "${fasta%.gz}" -zgrep "^>" "${fasta%.fa.gz}.chr-rename.fasta" -``` - -Results for `Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta`: -```txt ->I ->II ->III ->IV ->V ->VI ->VII ->VIII ->IX ->X ->XI ->XII ->XIII ->XIV ->XV ->XVI ->Mito -``` - -```bash -#!/bin/bash -#DONTRUN - -# K. lactis -cd "${HOME}/genomes/kluyveromyces_lactis_gca_000002515/Ensembl/55/DNA" || echo "cd failed. Check on this." - -fasta="Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.toplevel.fa.gz" -gunzip < "${fasta}" > "${fasta%.gz}" -awk '/^>/ {$0=$1} 1' "${fasta%.gz}" > "${fasta%.fa.gz}.chr-rename.fasta" -rm "${fasta%.gz}" -zgrep "^>" "${fasta%.fa.gz}.chr-rename.fasta" -``` - -Results for `Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.toplevel.chr-rename.fasta`: -```txt ->A ->B ->C ->D ->E ->F -``` -
-
- - -## [Concatenate the *S. cerevisiae*, *K. lactis*, and *S20* genomes](#concatenate-the-s-cerevisiae-k-lactis-and-s20-genomes) -...creating a combined genome for RNA-seq and related analyses -```bash -#!/bin/bash -#DONTRUN - -# Make a directory for the combined genome -cd "${HOME}/genomes" || echo "cd failed. Check on this." -mkdir -p combined_SC_KL_20S # For S. cerevisiae, K. lactis, and the 20 S narnavirus - -fasta_SC="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" -fasta_KL="Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.toplevel.chr-rename.fasta" -fasta_20S="20S_RNA_Narnavirus_1997_NC004051.chr-rename.fasta" -fasta_comb="combined_SC_KL_20S.fasta" - -cp \ - "${HOME}/genomes/sacCer3/Ensembl/108/DNA/${fasta_SC}" \ - combined_SC_KL_20S/ -\ - -cp \ - "${HOME}/genomes/kluyveromyces_lactis_gca_000002515/Ensembl/55/DNA/${fasta_KL}" \ - combined_SC_KL_20S/ - -cp \ - "${HOME}/genomes/20S_RNA_Narnavirus_1997_NC004051/${fasta_20S}" \ - combined_SC_KL_20S/ - -cat "${fasta_SC}" "${fasta_KL}" "${fasta_20S}" > "${fasta_comb}" -zgrep ">" "${fasta_comb}" -``` - - -### Chromosome contents of `combined_SC_KL_20S.fasta`: -```txt ->I ->II ->III ->IV ->V ->VI ->VII ->VIII ->IX ->X ->XI ->XII ->XIII ->XIV ->XV ->XVI ->Mito ->A ->B ->C ->D ->E ->F ->20S -``` -Great, this is what we want. - - -### [Create `Bowtie 2` indices](#create-bowtie-2-indices) -...for `combined_SC_KL_20S` -```bash -#!/bin/bash -#DONTRUN - -# Make a directory for the combined genome -cd "${HOME}/genomes/combined_SC_KL_20S" || echo "cd failed. Check on this." -mkdir -p fasta_individual # For S. cerevisiae, K. lactis, and the 20 S narnavirus - -mv "${fasta_SC}" "${fasta_KL}" "${fasta_20S}" fasta_individual/ - -# Index the fasta file -ml SAMtools/1.16.1-GCC-11.2.0 Bowtie2/2.4.4-GCC-11.2.0 -samtools faidx "${fasta_comb}" - -# Create a Bowtie2 index (e.g., metagenomics.wiki/tools/bowtie2/index) -mkdir -p Bowtie2 -bowtie2-build combined_SC_KL_20S.fasta Bowtie2/combined_SC_KL_20S \ - 1> combined_SC_KL_20S.bowtie2-build.stdout.txt - -cd Bowtie2 || echo "cd failed. Check on this." -bowtie2-inspect --names combined_SC_KL_20S # It looks correct -cd .. - -# Clean up a bit -mkdir -p {txt,fasta} -mv *fasta* fasta/ -mv *.txt txt/ -``` -
-
- - -# 2022-1027-1028 - -## Continued work with `how_are_we_stranded_here` -Move `how_are_we_stranded_here` output to a distinct directory, `how_are_we_stranded_here`, in `"${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025"` -```bash -#!/bin/bash -#DONTRUN - -cd "${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025" - -mkdir -p how_are_we_stranded_here -mv \ - kallisto_index \ - stranded_test_5781_G1_IN_GTCGAGAA_L001_R1_001/ \ - how_are_we_stranded_here/ -``` -
-
- - -## Items to work through `#TODO` -`#TODO (...)` Edit the `Bowtie2` alignment script from Alison in order to align an RNA-seq `fasta` file to the combined reference genome -`#TODO ( Y )` Figure out what to do regarding PCR duplicates and UMIs/demultiplexing; copy in and reflect on the recent, related e-mail chains from Alison -`#TODO ( Y )` Downsample fastq files - - -### Downsampling `fastq` files -Downsample `fastq` files in order to run quick tests that don't need many threads: -```bash -#!/bin/bash -#DONTRUN - -# First, download BBMap (latest version) from SourceForge; BBMap provides a -#+ quick and easy to do this sort of random downsampling -cd ~ # Do the following work in "${HOME}" -curl \ - -L https://sourceforge.net/projects/bbmap/files/BBMap_39.01.tar.gz/download \ - > BBMap_39.01.tar.gz - -tar -xvf BBMap_39.01.tar.gz # Unpack the tar.gz file -# Unpacked directory in "${HOME}" now: It's in a directory simply called -#+ "bbmap" (with the decompression, a bunch of info on files in the tar were -#+ printed to screen) - -# Get BBMap into "${PATH}" by adding this to the end of .bashrc: -#+ export PATH="${PATH}:${HOME}/bbmap" - -# Go ahead and remove the *.tar.gz file -rm BBMap_39.01.tar.gz - -# Use your bespoke script, 'downsample-fastqs.sh', which makes use of BBMap -#+ 'reformat.sh', to downsample fastq files -cd "${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction" - -# Sample down to 50,000 reads per file -#+ Also, need to install Java and/or at least have it loaded as a module -ml Java/15.0.1 - -# Make a directory to store the downsampled fastq files -mkdir -p "${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025/fastq" - -/bin/bash ./bin/downsample-fastqs.sh \ - "${HOME}/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_G1_IN/5781_G1_IN_merged_R1.fastq" \ - "${HOME}/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_G1_IN/5781_G1_IN_merged_R2.fastq" \ - "50k" \ - "${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025/fastq" -# Without loading Java, command exits with error code 127: -#+ /home/kalavatt/bbmap/reformat.sh: line 230: java: command not found -``` - -Printed to screen with the call to `downsample-fastqs.sh`: -```txt -java -ea -Xms300m -cp /home/kalavatt/bbmap/current/ jgi.ReformatReads in1=/home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_G1_IN/5781_G1_IN_merged_R1.fastq in2=/home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_G1_IN/5781_G1_IN_merged_R2.fastq out1=/home/kalavatt/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025/fastq/5781_G1_IN_merged_R1.50k.fastq out2=/home/kalavatt/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025/fastq/5781_G1_IN_merged_R2.50k.fastq samplereadstarget=50k -Executing jgi.ReformatReads [in1=/home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_G1_IN/5781_G1_IN_merged_R1.fastq, in2=/home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_G1_IN/5781_G1_IN_merged_R2.fastq, out1=/home/kalavatt/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025/fastq/5781_G1_IN_merged_R1.50k.fastq, out2=/home/kalavatt/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025/fastq/5781_G1_IN_merged_R2.50k.fastq, samplereadstarget=50k] - -Set INTERLEAVED to false -Input is being processed as paired -Input: 27977684 reads 1398884200 bases -Output: 100000 reads (0.36%) 5000000 bases (0.36%) - -Time: 25.654 seconds. -Reads Processed: 27977k 1090.58k reads/sec -Bases Processed: 1398m 54.53m bases/sec -``` - - -### Stepping through each line -...of the `Bowtie2` alignment and processing script from Alison G. (derived from `New_101122_sc_bowtie_4tu.sh`) - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Default settings - -cd "${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025" -alias .,="ls -lhaFG" - - -# 1: "Configuration variables" -wrap="" -rundir="$(pwd)" - -echo "${wrap}" -echo "${rundir}" - - -# 1 (cont.) -threads="${1:-"1"}" # Normally, 16 -load_module_cmd="module load" -load_modules="Bowtie2/2.4.4-GCC-11.2.0 SAMtools/1.16.1-GCC-11.2.0 deepTools/3.5.1-foss-2021b" -reference_genome="${HOME}/genomes/combined_SC_KL_20S/Bowtie2/combined_SC_KL_20S" -split_reads="${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction/bin/split_bam_fwd_rev.sh" - -echo "${threads}" -echo "${load_module_cmd}" -echo "${load_modules}" -echo "${reference_genome}" -echo "${split_reads}" - -., "${reference_genome}"* -., "${split_reads}" - - -# 1 (cont.) -sample_directory="${2:-"${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025/fastq"}" -sample_root="${3:-"5781_G1_IN_merged"}" - -echo "${sample_directory}" -echo "${sample_root}" - -., "${sample_directory}" -., "${sample_directory}/${sample_root}"* - - -# 1 (cont.) -expected_results="*sorted.bam *sorted.bam.bai" -expected_results_2=".bw" -output_directory="${rundir}/bam" -output_directory_2="${rundir}/bw" -cleanup_files="" -cleanup_command="echo Cleaning up files matching ${cleanup_files}" -reprocess="manual" - -echo "${expected_results}" -echo "${expected_results_2}" -echo "${output_directory}" -echo "${output_directory_2}" -echo "${cleanup_files}" -echo "${cleanup_command}" -echo "${reprocess}" - - -# 2: "Identify samples" -samples="" -params="$@" - -echo "${samples}" -echo "${params}" - - -# 3: "Process samples" -wrap="log eval " -log() { echo "\$ ${@/eval/}" 2>&1 | tee -a ${sample_log}; "$@" 2>&1 | tee -a ${sample_log}; } -logcd() { echo "\$ cd ${@/eval/}" 2>&1 | tee -a ${sample_log}; cd "$@" 2>&1 | tee -a ${sample_log}; } #NOTE #KA Function does not appear to be used (2022-1027) -logNoExec() { echo "\$ ${@/eval/}" 2>&1 | tee -a ${sample_log}; } -logNoEcho() { "$@" 2>&1 | tee -a ${sample_log}; } - -echo "Preparing environment to process samples: " -echo ${samples} -#TODO prompt to continue -#echo "Continue?" - -# Load required python modules. -for pymodule in ${load_modules}; do - echo "Loading module ${pymodule}..." - ${load_module_cmd} ${pymodule} - echo "...done." -done -#KA It works -#KA Try the for loop with quoted variables: It breaks; leave as is - - -# 4 -# Create the output directory and any needed parent directories. -[[ -d "${output_directory}" ]] || - { - echo "${output_directory} does not exist; mkdir'ing it..." - mkdir -p "${output_directory}" - } -# mkdir: created directory '/home/kalavatt/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025/bam' - -# Locate the infiles -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find "${sample_directory}" \ - -maxdepth 1 \ - -type f \ - -name "${sample_root}"* \ - -print0 \ - | sort -z \ -) -for i in "${infiles[@]}"; do echo "${i}"; done # Check; can comment out later -echo "" - -# Only two fastq files should be found; if less or more, then exit with a -#+ warning message -if [[ "${#infiles[@]}" -eq 0 ]]; then - echo "Exiting: Zero fastq files were found..." && exit 1 -elif [[ "${#infiles[@]}" -lt 2 ]]; then - echo "Exiting: Only one fastq file was found..." && exit 1 -elif [[ "${#infiles[@]}" -gt 2 ]]; then - echo "Exiting: More than two fastq files were found..." && exit 1 -elif [[ "${#infiles[@]}" -eq 2 ]]; then - : -fi -# So far, it works; let's keep stepping - - -# 5 -logNoExec "===========================" -logNoEcho date -logNoExec "Processing ${sample_name}" - -echo "$wrap" -echo "${threads}" -echo "${reference_genome}" -echo "${infiles[0]}" -echo "${infiles[1]}" - - -# ${wrap} bowtie2 \ -# -p "${threads}" \ -# -x "${reference_genome}" \ -# -1 "${infiles[0]}" \ -# -2 "${infiles[1]}" \ -# --trim5 1 \ -# --local \ -# --very-sensitive-local \ -# --no-unal \ -# --no-mixed \ -# --no-discordant \ -# --phred33 \ -# -I 10 \ -# -X 700 \ -# --no-overlap \ -# --no-dovetail \ -# | samtools sort -@ "${threads}" -o "${infiles[0]%_R1.fastq}_sorted.bam" - -#NOTE 1/2 In order for the pipe operation to work, the call to ${wrap} needs to -#NOTE 2/2 be removed - -# For example, it should be called like this: -bowtie2 \ - -p "${threads}" \ - -x "${reference_genome}" \ - -1 "${infiles[0]}" \ - -2 "${infiles[1]}" \ - --trim5 1 \ - --local \ - --very-sensitive-local \ - --no-unal \ - --no-mixed \ - --no-discordant \ - --phred33 \ - -I 10 \ - -X 700 \ - --no-overlap \ - --no-dovetail \ - | samtools sort -@ "${threads}" -o "${infiles[0]%_R1.fastq}_sorted.bam" - -# Meaning of Bowtie2 parameters: -#+ -p: threads -#+ -x: Bowtie2 indices, including path and root -#+ -1: Read #1 of paired-end reads -#+ -2: Read #2 of paired-end reads -#+ --trim5: trim bases from 5'/left end of reads -#+ --local: local alignment; ends might be soft clipped (off) -#+ --very-sensitive-local: -D 20 -R 3 -N 0 -L 20 -i S,1,0.50 -#+ -D: give up extending after failed extends in a row (15) -#+ -R: for reads w/ repetitive seeds, try sets of seeds (2) -#+ -N: max # mismatches in seed alignment; can be 0 or 1 (0) -#+ -L: length of seed substrings; must be >3, <32 (22) -#+ -i: interval between seed substrings w/r/t read len (S,1,1.15) -#+ --no-unal: suppress SAM records for unaligned reads -#+ --no-mixed: suppress unpaired alignments for paired reads -#+ --no-discordant: suppress discordant alignments for paired reads -#+ From biostars.org/p/78446/, a discordant alignment is an alignment where -#+ both mates align uniquely, but that does not satisfy the paired-end -#+ constraints (--fr/--rf/--ff, -I, -X). -#+ --phred33: qualities are Phred+33 (default) -#+ -I: minimum fragment length (0) -#+ -X: maximum fragment length (500) -#+ --no-overlap: not concordant when mates overlap at all -#+ --no-dovetail: NA - -#QUESTION Will piping to threaded samtools sort work? -#ANSWER 1/2 It seems so: github.com/samtools/samtools/issues/891 -#ANSWER 2/2 (Relevant text pasted below) -``` - - -#### [Will piping to threaded `samtools sort` work?](#will-piping-to-threaded-samtools-sort-work) - -##### [`samtools sort` number of threads in reading phase #891](https://github.com/samtools/samtools/issues/891) - -###### `bernt-matthias` commented on Jul 11, 2018 -**Is your feature request related to a problem? Please specify.** -1. When using `mapper | samtools sort -`, it is difficult to specify the number of threads for the mapper and for samtools. -2. Until all data is read entirely, `samtools` seldomly uses the available CPUs efficiently (CPU usage is seldomly larger than 100%). - -**Describe the solution you would like.** -I suggest to allow to specify the number of CPUs used by samtools during reading the data (and producing pre-sorted chunks) separately. This would simplify the specification of the number of threads used by both programs. Until the mapper is finished, `samtools` could, for instance, use a single thread for reading and chunking and then use the full number of threads afterwards (when the mapper has finished). Thereby -- the CPU usage could be better limited (in shared environments you need to specify the number of cores and sometimes admins really check) -- the currently suboptimal performance of `samtools sort` during reading would be nicely hidden. -- I guess the single thread for the first phase could nicely fill the missing CPU utilization of the mapper. - - -###### `jkbonfield` commented on Jul 11, 2018 -`sort` could certainly be more efficient. Ideally, it would be using asynchronous I/O too. - -However, this particular problem is perhaps one of expectation. Over-specifying the number of threads is not a catastrophically bad thing to do, and you can use `cgroups` or `hwloc-bind` to govern how many cores the entire process can take up too. - -Also, I don't think it's true to say that `samtools sort` only uses more than one CPU until the mapper has finished. It uses one thread until it's read enough data and then it uses multiple threads to sort and write that temporary data to disk, repeatedly. On finishing (no more `stdin`), it then has a separate merge stage. If your mapper is the slow part, then "yes", `samtools` will likely be stuck at under 100% CPU, but that's not really a `samtools` issue I think. - -Note there is more or less a way to handle what you want already (untested, but I think it's equivalent), e.g.: - -`mapper | samtools sort -l 0 -O bam -@2 | samtools view -O bam -@16 -o out.bam` - -The second merge stage only starts when the mapper has finished, and this will be I/O bound and won't be threading on output as there are no lengthy `bgzf` compression steps. The `samtools view` command will only start consuming CPU after the mapper has finished, so both mapper and view can be given the same cores to work on. - -Finally maybe you'll get more luck using `mapper | mbuffer | samtools` too with some systems and/or aligners. This can avoid issues with small pipe sizes. - - -###### `bernt-matthias` commented on Jul 11, 2018 -Thanks for the info and suggestions. - -```txt -On finishing (no more `stdin`) it then has a separate merge stage. If your mapper is the slow part, then "yes", `samtools` will likely be stuck at under 100% CPU, but that's not really a `samtools` issue I think. -``` - -Actually (in my case the mapper is `hisat2`), CPU usage is most of the time approx 100% and then spikes for a short time to approximately `x`\*100%, where `x` ist the number of threads given to `samtools`. But this time is really short. - -```txt - Note there is more or less a way to handle what you want already (untested, but I think it's equivalent), e.g.: - -`mapper | samtools sort -l 0 -O bam -@2 | samtools view -O bam -@16 -o out.bam` - -The second merge stage only starts when the mapper has finished, and this will be I/O bound and won't be threading on output as there are no lengthy `bgzf` compression steps. The `samtools view` command will only start consuming CPU after the mapper has finished, so both mapper and view can be given the same cores to work on. -``` - -Sounds like a cool idea. The result should be equivalent. - -Efficiency depends a bit on how sort merges the temporary files. If it is done in a tree-like fashion, then it would start to write output on the top level of the merge tree. But if all temporary files are merged at once, then it would start writing output immediately (which would start `view` earlier). For the suggested solution the latter would be better, I guess. - - -###### `jkbonfield` commented on Jul 11, 2018 -Sadly, `sort` is pretty noddy. It simply reads until hitting the memory limit, sorts, writes to temporary file, repeats. At the end, it then opens *ALL* files and merges. This isn't particularly efficient and can cause major I/O bottlenecks and/or running out of file descriptors if you've set the memory limit too low. - -It can perhaps be sped up by adjusting the block size to be larger than the file system hints at (`fstat`) via the `--input-fmt-option block_size=10000000` option, for example. This would use more memory (but probably still less than you used for sorting), but will perhaps thrash the system less. - - -###### My thoughts, 2022-1028 -I am not so sure about the `mapper | mbuffer | samtools` and `--input-fmt-option block_size=10000000` approaches mentioned above... - -Let's move forward with the `mapper | samtools sort -l 0 -O bam -@2 | samtools view -O bam -@16 -o out.bam` approach discussed above. If I understand things correctly, this will get uncompressed sorting started and cap it at a maximum of two threads, which I have decided to subtract from the number supplied to `bowtie2` to prevent overthreading; e.g., of 16 threads total, 14 are assigned to `bowtie2` and two are assigned to `samtools sort`. Then, the final compressed merge via `samtools view` will not begin until mapping with `bowtie2` is completed. - -The call to `bowtie2` and `samtools` will look like this: -```bash -#!/bin/bash -#DONTRUN - -threads=16 - -# superuser.com/questions/49765/how-to-make-a-statement-that-checks-if-something-is-divisible-by-something-else -# stackoverflow.com/questions/8356698/how-to-remove-decimal-from-a-variable -if [[ "${threads}" -gt 1 ]] && (( "${threads}" % 4 == 0 )); then #TODO More robust if/then logic here - # Call Bowtie2 in this manner if we've assigned a number of threads - #+ divisible by 4 - threads_bowtie2_float="$(echo "${threads}"*0.875 | bc)" - threads_sort_float="$(echo "${threads}"*0.125 | bc)" - threads_bowtie2="$(printf %.0f "${threads_bowtie2}")" - threads_sort="$(printf %.0f "${threads_sort}")" - - bowtie2 \ - -p "${threads_bowtie2}" \ - -x "${reference_genome}" \ - -1 "${infiles[0]}" \ - -2 "${infiles[1]}" \ - --trim5 1 \ - --local \ - --very-sensitive-local \ - --no-unal \ - --no-mixed \ - --no-discordant \ - --phred33 \ - -I 10 \ - -X 700 \ - --no-overlap \ - --no-dovetail \ - | samtools sort -@ "${threads_sort}" -l 0 -O "bam" \ - | samtools view -@ "${threads}" -0 bam "${infiles[0]%_R1.fastq}.bam" -else - echo "Threads is not greater than 1 and/or not divisible by 4" -fi -``` - - -### Stepping through each line -...of the `Bowtie2` alignment and processing script, which is now `align_process_fastqs.sh` - -Have added explicit arguments to the script `align_process_fastqs.sh`; let's carefully step through and test the things that have been drafted thus far... -```bash -#!/bin/bash -#DONTRUN - -grabnode # If not already on gizmo - -# Source functions ----------------------------------------------------------- -check_dependency() { - # Check if program is available in "${PATH}"; exit if not - # - # :param 1: program/package - command -v "${1}" &>/dev/null || - { - echo "Exiting: ${1} not found. Install ${1}." - # exit 1 - } -} - - -check_exit() { - # Check the exit code of a child process - # - # :param 1: exit code = 0> - # :param 2: program/package - if [[ "${1}" == "0" ]]; then - echo "${2} completed: $(date)" - else - err "#ERROR: ${2} returned exit code ${1}" - fi -} - - -err() { - # Print an error meassage, then exit with code 1 - # - # :param 1: program/package - echo "${1} exited unexpectedly" - # exit 1 -} - - -print_usage() { - # Print the help message and exit - echo "${help}" - # exit 1 -} - - -# Handle arguments, assign variables ----------------------------------------- -help=""" -Take user-input .bam files and split them into distinct .bam files for the -forward and reverse strands, saving the split .bam files to a user-defined out -directory. - -Dependencies: - - samtools >= 1.9 - -Arguments: - -h print this help message and exit - -u use safe mode: \"TRUE\" or \"FALSE\" - -i infile, including path - -o outfile directory, including path; if not found, will be mkdir'd - -t number of threads = 1> - -c remove bams for flags 147, 99, 83, and 163: \"TRUE\" or \"FALSE\" -""" - -while getopts "h:u:i:o:t:c:" opt; do - case "${opt}" in - h) echo "${help}" && exit ;; - u) safe_mode="${OPTARG}" ;; - i) infile="${OPTARG}" ;; - o) outdir="${OPTARG}" ;; - t) threads="${OPTARG}" ;; - c) clean_up="${OPTARG}" ;; - *) print_usage ;; - esac -done - -[[ -z "${safe_mode}" ]] && safe_mode=FALSE -[[ -z "${infile}" ]] && print_usage -[[ -z "${outdir}" ]] && print_usage -[[ -z "${threads}" ]] && threads=16 -[[ -z "${clean_up}" ]] && clean_up=TRUE - -# Assignments for tests -safe_mode=FALSE -infile="${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025/align_process_fastqs/bam/5781_G1_IN_merged.bam" -outdir="${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025/align_process_fastqs/bam" -threads=1 -clean_up=TRUE - -echo "${safe_mode}" -echo "${infile}" -echo "${outdir}" -echo "${threads}" -echo "${clean_up}" - -ls -lhaFG "${infile}" -ls -lhaFG "${outdir}" - - -# Check variable assignments and dependencies -------------------------------- -echo "" -echo "Running ${0}... " - -# Evaluate "${safe_mode}" -case "$(echo "${safe_mode}" | tr '[:upper:]' '[:lower:]')" in - true | t) \ - echo -e "-u: \"Safe mode\" is TRUE.\n" && set -Eeuxo pipefail ;; - false | f) \ - echo -e "-u: \"Safe mode\" is FALSE.\n" ;; - *) \ - echo -e "Exiting: -u \"safe mode\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; -esac - -# Check that "${infile}" exists -[[ -f "${infile}" ]] || - { - echo -e "Exiting: -i ${infile} does not exist.\n" - # exit 1 - } - -# Make "${outdir}" if it doesn't exist -[[ -d "${outdir}" ]] || - { - echo -e "-o: Directory ${outdir} does not exist; making the directory.\n" - mkdir -p "${outdir}" - } - -# Evaluate "${clean_up}" -case "$(echo "${clean_up}" | tr '[:upper:]' '[:lower:]')" in - true | t) \ - echo -e "-c: \"Clean up\" is TRUE.\n" ;; - false | f) \ - echo -e "-c: \"Clean up\" is FALSE.\n" ;; - *) \ - echo -e "Exiting: -c \"clean up\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; -esac - -echo "" - -# Check for necessary dependencies; exit if not found -module="SAMtools/1.16.1-GCC-11.2.0" -ml "${module}" -check_dependency samtools - - -# Make additional variable assignments from the arguments -------------------- -base="$(basename "${infile}")" -name="${base%.*}" -forward_1="${outdir}/${name}.fwd_99.bam" -forward_2="${outdir}/${name}.fwd_147.bam" -forward="${outdir}/${name}.fwd.bam" -reverse_1="${outdir}/${name}.rev_83.bam" -reverse_2="${outdir}/${name}.rev_163.bam" -reverse="${outdir}/${name}.rev.bam" - -echo "${base}" -echo "${name}" -echo "${forward_1}" -echo "${forward_2}" -echo "${forward}" -echo "${reverse_1}" -echo "${reverse_2}" -echo "${reverse}" - - -# Forward strand --------------------- -#+ -#+ 1. Alignments of the second in pair if they map to the forward strand -#+ 2. Alignments of the first in pair if they map to the reverse strand - -# 0x1 - paired -#+ 0x2 - properly paired -#+ 0x20 - partner on reverse strand -#+ 0x40 - read one -#+ FLAGs 0x1 + 0x2 + 0x20 + 0x40 = 0x63 = 99 in decimal -samtools view -@ "${threads}" -bh -f 99 "${infile}" -o "${forward_1}" -check_exit $? "samtools" - -samtools index -@ "${threads}" "${forward_1}" -check_exit $? "samtools" - -# 0x1 - paired -#+ 0x2 - properly paired -#+ 0x10 - on reverse strand -#+ 0x80 - read two -#+ FLAGs 0x1 + 0x2 + 0x10 + 0x80 = 0x93 = 147 in decimal -samtools view -@ "${threads}" -bh -f 147 "${infile}" -o "${forward_2}" -check_exit $? "samtools" - -samtools index -@ "${threads}" "${forward_2}" -check_exit $? "samtools" - -# Combine alignments that originate on the forward strand -samtools merge -@ "${threads}" -f "${forward_1}" "${forward_2}" -o "${forward}" -check_exit $? "samtools" - -samtools index -@ "${threads}" "${forward}" -check_exit $? "samtools" - - -# Reverse strand --------------------- -#+ -#+ 1. Alignments of the second in pair if they map to the reverse strand -#+ 2. Alignments of the first in pair if they map to the forward strand - -# 0x1 - paired -#+ 0x2 - properly paired -#+ 0x10 - reverse strand -#+ 0x40 - read one -#+ FLAGs 0x1 + 0x2 + 0x10 + 0x40 = 0x53 = 83 in decimal -samtools view -@ "${threads}" -bh -f 83 "${infile}" -o "${reverse_1}" -check_exit $? "samtools" - -samtools index -@ "${threads}" "${reverse_1}" -check_exit $? "samtools" - -# 0x1 - paired -#+ 0x2 - properly paired -#+ 0x30 - partner on reverse strand -#+ 0x80 - read two -#+ FLAGs 0x1 + 0x2 + 0x20 + 0x80 = 0xA3 = 163 in decimal -samtools view -@ "${threads}" -bh -f 163 "${infile}" -o "${reverse_2}" -check_exit $? "samtools" - -samtools index -@ "${threads}" "${reverse_2}" -check_exit $? "samtools" - -# Combine alignments that originate on the reverse strand -samtools merge -@ "${threads}" -f "${reverse_1}" "${reverse_2}" -o "${reverse}" -check_exit $? "samtools" - -samtools index "${reverse}" -check_exit $? "samtools" - - -# Clean up ------------------------------------------------------------------- -if \ - [[ "$(echo "${clean_up}" | tr '[:upper:]' '[:lower:]')" == "true" ]] || \ - [[ "$(echo "${clean_up}" | tr '[:upper:]' '[:lower:]')" == "t" ]]; then - rm \ - "${forward_1}" \ - "${forward_2}" \ - "${reverse_1}" \ - "${reverse_2}" - rm \ - "${forward_1}.bai" \ - "${forward_2}.bai" \ - "${reverse_1}.bai" \ - "${reverse_2}.bai" -fi -``` - - -#### Stepping through `split_bam_by_species.sh` -Great, it works. Now, write up code, to be kept in a separate script, for filtering the `bam` files by *S. cerevisiae*, *K. lactis*, and 20 S narnavirus. -```bash -#!/bin/bash -#DONTRUN - -bam="5781_G1_IN_merged.bam" -samtools idxstats "${bam}" | cut -f 1 -# I -# II -# III -# IV -# V -# VI -# VII -# VIII -# IX -# X -# XI -# XII -# XIII -# XIV -# XV -# XVI -# Mito -# A -# B -# C -# D -# E -# F -# 20S -# * - -samtools view -h "${bam}" | tail -5 -# HISEQ:1007:HGV5NBCX3:1:2111:1451:67691 147 20S 2037 44 49M = 1861 -225 CGACTATAAGGTCACCCGGCCGGGTAAGATGTACCCGGACCGTTACGGC GIIGIGIIGGIIIGIIG - command -v "${1}" &>/dev/null || - { - echo "Exiting: ${1} not found. Install ${1}." - # exit 1 - } -} - - -check_exit() { - # Check the exit code of a child process - # - # :param 1: exit code = 0> - # :param 2: program/package - if [[ "${1}" == "0" ]]; then - echo "${2} completed: $(date)" - else - err "#ERROR: ${2} returned exit code ${1}" - fi -} - - -err() { - # Print an error meassage, then exit with code 1 - # - # :param 1: program/package - echo "${1} exited unexpectedly" - # exit 1 -} - - -print_usage() { - # Print the help message and exit - echo "${help}" - # exit 1 -} - - -# Handle arguments, assign variables ----------------------------------------- -help=""" -Take user-input .bam files containing alignments to S. cerevisiae, K. lactis, -and 20 S narnavirus, and split them into distinct .bam files for each species, -with three splits for S. cerevisiae: all S. cerevisiae chromosomes not -including chrM, all S. cerevisiae including chrM, and S. cerevisiae chrM only. -The split .bam files are saved to a user-defined out directory. - -Dependencies: - - samtools >= 1.9 - -Arguments: - -h print this help message and exit - -u use safe mode: \"TRUE\" or \"FALSE\" - -i infile, including path - -o outfile directory, including path; if not found, will be mkdir'd - -t number of threads = 1> -""" - -while getopts "h:u:i:o:t:" opt; do - case "${opt}" in - h) echo "${help}" && exit ;; - u) safe_mode="${OPTARG}" ;; - i) infile="${OPTARG}" ;; - o) outdir="${OPTARG}" ;; - t) threads="${OPTARG}" ;; - *) print_usage ;; - esac -done - -[[ -z "${safe_mode}" ]] && safe_mode=FALSE -[[ -z "${infile}" ]] && print_usage -[[ -z "${outdir}" ]] && print_usage -[[ -z "${threads}" ]] && threads=16 - -# Assignments for tests -safe_mode=FALSE -infile="${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025/align_process_fastqs/bam/5781_G1_IN_merged.bam" -outdir="${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1025/align_process_fastqs/bam" -threads=1 - -echo "${safe_mode}" -echo "${infile}" -echo "${outdir}" -echo "${threads}" - -ls -lhaFG "${infile}" -ls -lhaFG "${outdir}" - - -# Check variable assignments and dependencies -------------------------------- -echo "" -echo "Running ${0}... " - -# Evaluate "${safe_mode}" -case "$(echo "${safe_mode}" | tr '[:upper:]' '[:lower:]')" in - true | t) \ - echo -e "-u: \"Safe mode\" is TRUE.\n" && set -Eeuxo pipefail ;; - false | f) \ - echo -e "-u: \"Safe mode\" is FALSE.\n" ;; - *) \ - echo -e "Exiting: -u \"safe mode\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; -esac - -# Check that "${infile}" exists -[[ -f "${infile}" ]] || - { - echo -e "Exiting: -i ${infile} does not exist.\n" - # exit 1 - } - -# Make "${outdir}" if it doesn't exist -[[ -d "${outdir}" ]] || - { - echo -e "-o: Directory ${outdir} does not exist; making the directory.\n" - mkdir -p "${outdir}" - } - -echo "" - -# Check for necessary dependencies; exit if not found -module="SAMtools/1.16.1-GCC-11.2.0" -ml "${module}" -check_dependency samtools - - -# Make additional variable assignments from the arguments -------------------- -base="$(basename "${infile}")" -name="${base%.*}" -split_SC="${outdir}/${name}.split_SC.bam" -split_SC_Mito="${outdir}/${name}.split_SC_Mito.bam" -split_Mito="${outdir}/${name}.split_Mito.bam" -split_KL="${outdir}/${name}.split_KL.bam" -split_20S="${outdir}/${name}.split_20S.bam" - - -# Run samtools to split the bam by species/chromosome ------------------------ -samtools view \ - -@ "${threads}" \ - -h "${infile}" \ - I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI \ - -o "${split_SC}" - -samtools view \ - -@ "${threads}" \ - -h "${infile}" \ - I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito \ - -o "${split_SC_Mito}" - -samtools view \ - -@ "${threads}" \ - -h "${infile}" \ - Mito \ - -o "${split_Mito}" - -samtools view \ - -@ "${threads}" \ - -h "${infile}" \ - A B C D E F \ - -o "${split_KL}" - -samtools view \ - -@ "${threads}" \ - -h "${infile}" \ - 20S \ - -o "${split_20S}" -``` - - -#### Miscellaneous tab to remember -Have this open eventually: https://bioinformaticsdotca.github.io/rnaseq_2017_tutorial6 -
-
- - -# 2022-1031 - -## `#NOTE` -- Spent much of the morning updating MacOS, and fine-tuning the `brew` installation and the ARM- and M1-installation of `conda` (`mambaforge`); also, organized files and began to reacquaint myself with the TPM-calculation work from early September (prior to starting this job) -- Spent much of the late morning and afternoon working with Alison's script, `Analysis_sense_antisense.Rmd`, running it line by line and adjusting it to have proper paths - - Made a few small code changes, especially in response to questions and issues raised by Alison - - Made many formatting changes such as adding namespaces, indenting and adding new lines, etc. -- Spent the late afternoon reacquainting myself with the TPM-calculation work, including the installation of [`slowkow/picardmetrics`](https://github.com/slowkow/picardmetrics), which is documented in detail [here as a `GitHub Gist`](https://gist.github.com/kalavattam/74394ed83c542862e087658accbdbc38) -
-
- - -## `#TODO` -- Continue the TPM work - - Understand what needs to be run before/after what when working with the adapted code base from `slowkow` (the work started in early September, 2022) - - `#NOTE` TPM, like FPKM/RPKM, is not well-suited for between-sample comparisons: We may want to end up using something like `DESeq2` normalization (`#QUESTION` including something like `rlow`?) or `edgeR` TMM; still, get the TPM code up and running -- Review notes (e.g., from previous meetings), steps, written-by-me code, and e-mails (incorporating some into this or another notebook where necessary) prior to Alison's arrival to the lab tomorrow; we-ll likely touch base to talk about things when she comes - - Look into the PCR deduplication with UMI tools that was suggested by Alison: Need to figure out what that entails - - Remember, the goal is to have appropriately processed bam files for experiments to determine the best way(s) to call `Trinity` -- Continue to build out the alignment and processing script you were working on at the end of last week (functionize it, get major modules into separate scripts, get the main work into a driver script, etc.) -
-
- - -# 2022-1101 -Work on calculating TPM, alignment, processing, etc. continued in `2022_transcriptome-assembly/2022-1101/readme.md`, etc. diff --git a/results/2022-1101/notebook/TODO.2022-1120.jpg b/results/2022-1101/notebook/TODO.2022-1120.jpg deleted file mode 100644 index 05595df..0000000 Binary files a/results/2022-1101/notebook/TODO.2022-1120.jpg and /dev/null differ diff --git a/results/2022-1101/notebook/UMIs.png b/results/2022-1101/notebook/UMIs.png deleted file mode 100644 index 61877da..0000000 Binary files a/results/2022-1101/notebook/UMIs.png and /dev/null differ diff --git a/results/2022-1101/notebook/alignment.multi-hit-mode-parameters.list-tally-flags.png b/results/2022-1101/notebook/alignment.multi-hit-mode-parameters.list-tally-flags.png deleted file mode 100644 index 7a852a5..0000000 Binary files a/results/2022-1101/notebook/alignment.multi-hit-mode-parameters.list-tally-flags.png and /dev/null differ diff --git a/results/2022-1101/notebook/alignment.multi-hit-mode-parameters.metrics.png b/results/2022-1101/notebook/alignment.multi-hit-mode-parameters.metrics.png deleted file mode 100644 index 519e02e..0000000 Binary files a/results/2022-1101/notebook/alignment.multi-hit-mode-parameters.metrics.png and /dev/null differ diff --git a/results/2022-1101/notebook/alignment.rna-star-parameters.list-tally-flags.png b/results/2022-1101/notebook/alignment.rna-star-parameters.list-tally-flags.png deleted file mode 100644 index f7111d7..0000000 Binary files a/results/2022-1101/notebook/alignment.rna-star-parameters.list-tally-flags.png and /dev/null differ diff --git a/results/2022-1101/notebook/alignment.rna-star-parameters.metrics.png b/results/2022-1101/notebook/alignment.rna-star-parameters.metrics.png deleted file mode 100644 index 79a2066..0000000 Binary files a/results/2022-1101/notebook/alignment.rna-star-parameters.metrics.png and /dev/null differ diff --git a/results/2022-1101/notebook/key-binding-initial.jupyterlab.png b/results/2022-1101/notebook/key-binding-initial.jupyterlab.png deleted file mode 100644 index ad09f03..0000000 Binary files a/results/2022-1101/notebook/key-binding-initial.jupyterlab.png and /dev/null differ diff --git a/results/2022-1101/notebook/normalization.xlsx b/results/2022-1101/notebook/normalization.xlsx deleted file mode 100644 index a2896e1..0000000 Binary files a/results/2022-1101/notebook/normalization.xlsx and /dev/null differ diff --git a/results/2022-1101/notebook/pipelines.2022-1121.preprocessing-rough.jpg b/results/2022-1101/notebook/pipelines.2022-1121.preprocessing-rough.jpg deleted file mode 100644 index 7d25bc8..0000000 Binary files a/results/2022-1101/notebook/pipelines.2022-1121.preprocessing-rough.jpg and /dev/null differ diff --git a/results/2022-1101/notebook/pipelines.2022-1121.preprocessing_Trinity.jpg b/results/2022-1101/notebook/pipelines.2022-1121.preprocessing_Trinity.jpg deleted file mode 100644 index a08fa27..0000000 Binary files a/results/2022-1101/notebook/pipelines.2022-1121.preprocessing_Trinity.jpg and /dev/null differ diff --git a/results/2022-1101/notebook/pipelines.2022-1122.preprocessing_Trinity.1.jpg b/results/2022-1101/notebook/pipelines.2022-1122.preprocessing_Trinity.1.jpg deleted file mode 100644 index fa8f2f3..0000000 Binary files a/results/2022-1101/notebook/pipelines.2022-1122.preprocessing_Trinity.1.jpg and /dev/null differ diff --git a/results/2022-1101/notebook/pipelines.2022-1122.preprocessing_Trinity.2.jpg b/results/2022-1101/notebook/pipelines.2022-1122.preprocessing_Trinity.2.jpg deleted file mode 100644 index 5922010..0000000 Binary files a/results/2022-1101/notebook/pipelines.2022-1122.preprocessing_Trinity.2.jpg and /dev/null differ diff --git a/results/2022-1101/notebook/trinity-parameters.xlsx b/results/2022-1101/notebook/trinity-parameters.xlsx deleted file mode 100644 index 4b118ed..0000000 Binary files a/results/2022-1101/notebook/trinity-parameters.xlsx and /dev/null differ diff --git a/results/2022-1101/notes-Alison-RNA-seq-kits.md b/results/2022-1101/notes-Alison-RNA-seq-kits.md deleted file mode 100644 index 348f88c..0000000 --- a/results/2022-1101/notes-Alison-RNA-seq-kits.md +++ /dev/null @@ -1,36 +0,0 @@ - -# 2022-11 -
-Table of Contents - - -1. [Information on the RNA-seq kits used by Alison](#information-on-the-rna-seq-kits-used-by-alison) - 1. [Email from Alison](#email-from-alison) - 1. [Additional notes](#additional-notes) - - -
-
- - -## Information on the RNA-seq kits used by Alison - -### Email from Alison -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Date: Wednesday, November 2, 2022 at 4:27 PM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: RNA seq kit info - -SoLo Kit - all RNAseq from ~2017-2020ish -G1vsQ data produced with this kit -https://lifesciences.tecan.com/ovation-solo-rna-seq-library-preparation-nuquant - -Universal Plus Total - all other RNA sequencing by AG -https://lifesciences.tecan.com/universal-plus-total-rna-seq-library-preparation-kit-nuquant - -Alison - - -### Additional notes -- For Ovation SoLo, [pdf files are here](https://lifesciences.tecan.com/ovation-solo-rna-seq-library-preparation-nuquant?p=tab--5) -- For Universal Plus Total, [pdf files are here](https://lifesciences.tecan.com/universal-plus-total-rna-seq-library-preparation-kit-nuquant?p=tab--5) diff --git a/results/2022-1101/notes-Alison-files-locations.md b/results/2022-1101/notes-Alison-files-locations.md deleted file mode 100644 index 14e165f..0000000 --- a/results/2022-1101/notes-Alison-files-locations.md +++ /dev/null @@ -1,314 +0,0 @@ - -`#2022-11` -
-
- -
-Table of Contents - - -1. [Updated list of Alison's paths to important directories and files](#updated-list-of-alisons-paths-to-important-directories-and-files) - 1. [Locations of "processed `.bam` files"](#locations-of-processed-bam-files) - 1. [WTQvsG1](#wtqvsg1) - 1. [Nab3_Nrd1_Depletion](#nab3_nrd1_depletion) - 1. [Email chain between me and Alison](#email-chain-between-me-and-alison) - 1. [Message #1](#message-1) - 1. [Message #2](#message-2) - 1. [Locations of "raw `.fastq` files" and "UMI information"](#locations-of-raw-fastq-files-and-umi-information) - 1. [WTQvsG1](#wtqvsg1-1) - 1. [#1](#1) - 1. [#2](#2) - 1. [TRF4_SSRNA_April2022](#trf4_ssrna_april2022) - 1. [Nab3_Nrd1_Depletion](#nab3_nrd1_depletion-1) - 1. [#1](#1-1) - 1. [#2](#2-1) - 1. [Email chain between me and Alison on "raw" `.fastq` files and "UMI information"](#email-chain-between-me-and-alison-on-raw-fastq-files-and-umi-information) - 1. [Message #1](#message-1-1) - 1. [Message #2](#message-2-1) - 1. [Locations of other important files](#locations-of-other-important-files) - 1. [Email from Alison, 2022-1020](#email-from-alison-2022-1020) - - -
-
- - -## Updated list of Alison's paths to important directories and files - -### Locations of "processed `.bam` files" -...i.e., those that are ready for use with `htseq-count` or `featurecounts` - - -#### WTQvsG1 -```bash -~/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq -~/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq/bam_resort -``` - - -#### Nab3_Nrd1_Depletion -```bash -~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/SC_bams_all -``` -- `#DONE` Double check that this is the correct location for "processed .bam files" - + Seems not to be per [this email](#email-from-alison-2022-1020); for example, output of HTSeq `count` here: -```bash -~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/6126_7716/S_cerevisiae_BamFiles/bam_resort/feature_counts_7716_6126 -``` - - -#### Email chain between me and Alison - -##### Message #1 -From: [Alavattam, Kris](kalavatt@fredhutch.org) -Sent: Tuesday, November 1, 2022 10:19 AM -To: [Greenlaw, Alison C](agreenla@fredhutch.org) -Subject: .bam files for calculating TPM - -Hi Alison, - -In addition to Nab3_Nrd1_Depletion, was thinking to test my in-progress TPM code on some WTQvsG1 .bam files that you have processed (those that you’re using to run htseq-count/featurecounts). If there are any, can you let me know the location of some files? - -Thanks, -Kris - - -##### Message #2 -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Date: Tuesday, November 1, 2022 at 10:55 AM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: Re: .bam files for calculating TPM - -Yes! - -There are bam files at: -```bash -~/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq -``` -Also resorted for HTseq: -```bash -~/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq/bam_resort -``` - -I should be in in the next hour-ish so we can chat more then! - -Alison - - -### Locations of "raw `.fastq` files" and "UMI information" -Notes and summary based on an email chain between me and Alison, [shown below](#email-chain-between-me-and-alison) and [above](#email-chains-between-alison-and-matt-fitzgibbon-fhcc-bioinformatician) - -#### WTQvsG1 - -##### #1 -```bash -~/tsukiyamalab/alisong/WTQvsG1/Unaligned_UMI/Project_ccucinot -``` -- Demultiplexed but still contain PCR duplicates to be removed with UMI-tools -- The `.fastq` files in here look like this: -```txt -*_I1_001.fastq.gz -*_R1_001.fastq.gz -*_R2_001.fastq.gz -*_R3_001.fastq.gz -``` - - -##### #2 -```bash -~/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_578* -``` -- Demultiplexed but still contain PCR duplicates to be removed with UMI-tools -- These directories contain copies of the above `.fastq` files -```txt -*_R1_001.fastq -*_R1_002.fastq -*_R1_003.fastq -*_R1_004.fastq -*_R2_001.fastq -*_R2_002.fastq -*_R2_003.fastq -*_R2_004.fastq -``` - - -#### TRF4_SSRNA_April2022 -```bash -~/tsukiyamalab/alisong/TRF4_SSRNA_April2022/UMI_information/Project_agreenla -#QUESTION What is this project? -#QUESTION Is this a project we're working on now? -``` - - -#### Nab3_Nrd1_Depletion - -###### #1 -```bash -~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/{5782_7714,6125_7718,6126_7716} -``` -- Demultiplexed but still contain PCR duplicates to be removed with UMI-tools -- Here, there are `.fastq` files with strings `*_R1_*` and `*_R3_*`, e.g., -```txt -*_Nascent_S3_R1_001.fastq -*_Nascent_S3_R3_001.fastq -*_SteadyState_S8_R1_001.fastq -*_SteadyState_S8_R3_001.fastq -``` - - -###### #2 -```bash -~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/5782_7714/UMI -~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/6125_7718/UMI -~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/6126_7716/UMI - -# i.e., -# ~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/{5782_7714,6125_7718,6126_7716}/UMI -``` -- Here, there are .fastq files with strings: `*_R1_*`, `*_R2_*`, `*R3_`*, `*_I1_*`, and `*_I2_*`; how to handle them? - + `#TODO ( )` Reference with [the email chains between Alison and Matt](#email-chains-between-alison-and-matt-fitzgibbon-fhcc-bioinformatician) -- How are these files different from the above? - - -#### Email chain between me and Alison on "raw" `.fastq` files and "UMI information" - - -##### Message #1 -From: [Alavattam, Kris](kalavatt@fredhutch.org) -Sent: Thursday, October 27, 2022 2:43 PM -To: [Greenlaw, Alison C](agreenla@fredhutch.org) -Subject: Some questions about the fastq files - -Hi Alison, - -I just want to check my understanding regarding the fastq files: i.e., what is what, what I should try out for alignment and Trinity work, etc. - -For the WT Q vs. G1 analyses, raw fastq files are in this directory: -```bash -~/tsukiyamalab/alisong/WTQvsG1/Unaligned_UMI/Project_ccucinot -``` -1. These have not yet been demultiplexed and I should (perhaps not now but eventually) demultiplex them to remove PCR duplicates using UMI tools? Then, use the demultiplexed fastq files for alignment and Trinity work, right? - -For the WT Q vs. G1 analyses as well, there are also raw fastq files in these directories: -```bash -~/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_578* -``` -2. These files have been demultiplexed, but PCR duplicates remain in the fastq files—is that correct? -3. To save time, I am thinking I should use the `*_merged_R{1,2}.fastq` files for alignment to the combined reference (comprised of *S. cerevisiae*, *K. lactis*, and 20 S) and downstream steps: is that reasonable to you? - -For WT vs. Nab3-depletion work, there are fastq files in these directories: -```bash -~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/{5782_7714,6125_7718,6126_7716} -``` -4. These files have been demultiplexed, but PCR duplicates remain in the fastq files—is that correct? - -Within each of the immediately above `{5782_7714,6125_7718,6126_7716}` directories, there are UMI subdirectories: -```bash -~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/{5782_7714,6125_7718,6126_7716}/UMI -``` -5. These contain fastq files that have not been demultiplexed and I should (perhaps not now but eventually) demultiplex them to remove PCR duplicates using UMI tools? Then, use the demultiplexed fastq files for alignment and Trinity work, right? - -Until I hear back from you, I will move forward with what I typed in question #3 above. I’ll appreciate any instructions, insights, and/or advice. - -Thanks! And apologies for the questions while you’re off, -Kris - - -##### Message #2 -From: [Greenlaw, Alison C](agreenla@fredhutch.or ) -Date: Thursday, October 27, 2022 at 2:58 PM -To: [Alavattam, Kris](kalavatt@fredhutch.or) -Subject: Re: Some questions about the fastq files - -Hi Kris! You caught me right before my flight so excellent timing. - -> To address your questions: -> For the WT Q vs. G1 analyses, raw fastq files are in this directory: -> ```bash -> ~/tsukiyamalab/alisong/WTQvsG1/Unaligned_UMI/Project_ccucinot -> ``` -> 1. These have not yet been demultiplexed and I should (perhaps not now but eventually) demultiplex them to remove PCR duplicates using UMI tools? Then, use the demultiplexed fastq files for alignment and Trinity work, right? - -Yes! They have been "demultiplexed" in that the core splits them by barcode but no UMI processing has been done. (Is this also known as demultiplexing?) PCR duplicates should be removed using UMI tools. Then, use those fastq files with UMI removed for alignment and Trinity work. - -> For the WT Q vs. G1 analyses as well, there are also raw fastq files in these directories: -> ```bash -> ~/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_578* -> ``` -> 2. These files have been demultiplexed, but PCR duplicates remain in the fastq files: is that correct? - -Yep! - -> 3. To save time, I am thinking I should use the `*_merged_R{1,2}.fastq` files for alignment to the combined reference (comprised of *S. cerevisiae*, *K. lactis*, and 20 S) and downstream steps: is that reasonable to you? - -This is definitely a good place to start! Perhaps we can re-do with UMI factored in later? - -> For WT vs. Nab3-depletion work, there are fastq files in these directories: -> ```bash -> ~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/{5782_7714,6125_7718,6126_7716} -> ``` -> 4. These files have been demultiplexed, but PCR duplicates remain in the fastq files: is that correct? - -Yes! - -> Within each of the immediately above `{5782_7714,6125_7718,6126_7716}` directories, there are UMI subdirectories: -> ```bash -> ~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/{5782_7714,6125_7718,6126_7716}/UMI -> ``` -> 5. These contain fastq files that have not been demultiplexed and I should (perhaps not now but eventually) demultiplex them to remove PCR duplicates using UMI tools? Then, use the demultiplexed fastq files for alignment and Trinity work, right? - -Yes - so R2 contains UMI info - it needs to be processed along with R1 and R3 to my knowledge if we are incorporating UMI info. - -Hopefully this is clarified for you! I think you are very much on the right track. I have not done any work to remove PCR duplicates, I have been saving UMI info for a future moment, that may or may not be soon depending on how much Trinity needs less coverage. - -Alison - - -### Locations of other important files - -#### Email from Alison, 2022-1020 -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Date: Thursday, October 20, 2022 at 5:56 PM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: File Locations - -Hi Kris - - -Nab3 depletion data -`~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla` - -Folders of interest: -- I split samples for speed reasons. Raw fastq R1 and R3 reads in these 3 folders: - - 5782_7714 - - 6126_7716 - - 6125_7718 - - Within each folder is UMI folder with R2, I1 and I2 reads. We don't currently have a pipeline with includes them, but I have thought it would be good for a while. - - I copied all aligned bams into SC_bams_all - - Output of HTSeq count (one for each folder above): - - `~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/6126_7716/S_cerevisiae_BamFiles/bam_resort/feature_counts_7716_6126` - -WT G1 vs Q data -`~/tsukiyamalab/alisong/WTQvsG1/` - -Folders of interest: -- Raw fastq info - - `~/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot` - - each sample has a folder. The Bioinformatics core does it differently now. So fastq files used to need to be merged. - - "IP" = Nascent, "IN" = SteadyState -- Trinity Run Location - - `~/tsukiyamalab/alisong/WTQvsG1/de_novo_annotation/all_at_once/correct_bams` -- Map trinity output to genome location - - `~/tsukiyamalab/alisong/WTQvsG1/de_novo_annotation/map_trin_to_genome/try2` -- I started thinking about annotation automation. Not a ton here but some - - `~/tsukiyamalab/alisong/WTQvsG1/automation_of_annotation` -- I attempted to break AS transcripts into Classes. That all happened here. This is probably the biggest mess of any of the above: - - `~/tsukiyamalab/alisong/WTQvsG1/MANUAL/AS_CLASSES` - - and: `~/tsukiyamalab/alisong/WTQvsG1/MANUAL/AS_CLASSES/jan2022_good` - -Steady State Q entry Data -- `~/tsukiyamalab/alisong/TRF4_SSRNA_April2022/Project_agreenla` -- This was all done for an old project but might be relevant to Toshi's interests and or the larger project - -All the R stuff is local to my laptop/on my OneDrive. Happy to figure out a way to share than more easily. Also please let me know if there are file permission issues. - -Alison diff --git a/results/2022-1101/notes-Alison-papers.md b/results/2022-1101/notes-Alison-papers.md deleted file mode 100644 index c2c2f77..0000000 --- a/results/2022-1101/notes-Alison-papers.md +++ /dev/null @@ -1,319 +0,0 @@ - -# 2022-1109 -
-Table of Contents - - -1. [Reading and taking notes on the papers sent by Alison](#reading-and-taking-notes-on-the-papers-sent-by-alison) -1. [Reading through Alison's qualifying exam \(QE\) proposal](#reading-through-alisons-qualifying-exam-qe-proposal) - 1. [QE proposal *Introduction*](#qe-proposal-introduction) - 1. [QE proposal *Aims*](#qe-proposal-aims) - 1. [QE proposal *Background and Significance*](#qe-proposal-background-and-significance) - 1. [QE proposal *Approach*](#qe-proposal-approach) - 1. [Aim 1: Determine Function of Nuclear Exosome Cofactor *TRF4* in Quiescence Entry](#aim-1-determine-function-of-nuclear-exosome-cofactor-trf4-in-quiescence-entry) - 1. [Aim 1.1: Which transcripts misregulated by TRF4 are most essential to Q entry?](#aim-11-which-transcripts-misregulated-by-trf4-are-most-essential-to-q-entry) - 1. [Aim 1.1: Expected Outcomes](#aim-11-expected-outcomes) - 1. [Aim 1.1: Pitfalls and Alternative Approaches](#aim-11-pitfalls-and-alternative-approaches) - 1. [Aim 1.2: What are the consequences of undegraded RNAs in Q entry?](#aim-12-what-are-the-consequences-of-undegraded-rnas-in-q-entry) - 1. [Aim 1.2: Expected Outcomes](#aim-12-expected-outcomes) - 1. [Aim 1.2: Pitfalls and Alternative Approaches](#aim-12-pitfalls-and-alternative-approaches) - 1. [Aim 1.3: What effect does *trf4Δ* have on transcription in Q entry?](#aim-13-what-effect-does-trf4%CE%94-have-on-transcription-in-q-entry) - 1. [Aim 1.3: Expected Outcomes](#aim-13-expected-outcomes) - 1. [Aim 1.3: Pitfalls and Alternative Approaches](#aim-13-pitfalls-and-alternative-approaches) - 1. [Aim 2: Investigate Functional Antisense Transcription in Quiescence](#aim-2-investigate-functional-antisense-transcription-in-quiescence) - 1. [Aim 2.1: Nascent RNA sequencing and Annotation of Quiescent Transcriptome](#aim-21-nascent-rna-sequencing-and-annotation-of-quiescent-transcriptome) - 1. [Aim 2.1: Expected Outcomes](#aim-21-expected-outcomes) - 1. [Aim 2.1: Pitfalls and Alternative approaches](#aim-21-pitfalls-and-alternative-approaches) - 1. [Aim 2.2: Transcriptional interference in Quiescence](#aim-22-transcriptional-interference-in-quiescence) - 1. [Aim 2.2: Expected Outcomes](#aim-22-expected-outcomes) - 1. [Aim 2.2: Pitfalls and Alternative approaches](#aim-22-pitfalls-and-alternative-approaches) - 1. [QE proposal *Future Directions*](#qe-proposal-future-directions) - 1. [QE proposal *Rigor and Reproducibility*](#qe-proposal-rigor-and-reproducibility) - 1. [QE proposal *Innovation*](#qe-proposal-innovation) -1. [Reading through Alison's Research Summary, Spring 2022](#reading-through-alisons-research-summary-spring-2022) - 1. [Role of Nuclear Exosome co-factor Trf4 in Quiescence Entry](#role-of-nuclear-exosome-co-factor-trf4-in-quiescence-entry) - 1. [Nascent Transcription in Quiescence Project](#nascent-transcription-in-quiescence-project) - - -
-
- - -## Reading and taking notes on the papers sent by Alison -`#TODO` Copy in email here - - -## Reading through Alison's qualifying exam (QE) proposal - -### QE proposal *Introduction* -¶2 -A conserved feature of the eukaryotic genomes from yeast to humans is pervasive transcription. In *S. cerevisiae* ~75% of the genome is comprised of annotated genes, and at least 85% is transcribed.3 This results in noncoding transcription which is either in close proximity to or **overlaps** annotated genes, much of it using the antisense strand. However, many of the transcripts produced are rapidly degraded, therefore termed “cryptic”. These transcripts have largely been annotated and classified based on what factor was knocked out in order to stabilize them, but *comprehensive study of their biological function remains a challenge*. The extent to which cryptic transcription is functional remains a matter of debate. Antisense transcription has been found to be a weak regulator of protein levels – regulating ~25% of 188 genes tested.4 - -```txt -Cryptic transcription - - 85% of genes are transcribed in cycling yeast cells, resulting in substantial amounts - of noncoding transcription; however, much of this noncoding transcription is quickly - degraded, before it can be detected with, e.g., RNA-seq or similar NGS methods - - It is this undetected transcription (which is degraded on a much shorter time scale - than transcription that can be detected by RNA-seq) that is termed cryptic - transcription -``` - -¶3 -... My preliminary analysis shows that Q yeast show differentially expressed antisense transcription at ~600 loci compared to G1 arrested cells. As a result, quiescence is an ideal state to enrich for functional ncRNAs and noncoding transcription. - -¶4 -Many noncoding RNAs are rapidly degraded. Much of this degradation is controlled by the nuclear exosome. The nuclear exosome has been linked to genetic disease and cancer.9 Additionally, RNA stability is highly regulated through the cell cycle10 and contribute to a fibroblast model of quiescence11. However, how RNA stability is regulated in Q entry has not been comprehensively studied. ... - - -### QE proposal *Aims* -¶1 -**Aim 1: Determine Function of Nuclear Exosome Cofactor TRF4 in Quiescence Entry** -`#NOTE Per Alison, this aim is dead now; see the email in which she sent this write-up` -`#TODO Paste that info in here` - -¶2 -**Aim 2: Investigate Functional Antisense Transcription in Quiescence** -In Aim 2, I will use nascent RNA sequencing as a discovery mechanism for functional antisense transcription in quiescence. In Aim 2.1, I will focus on the analysis of nascent RNA sequencing in Q and G1 arrested cells. The goal of which is to select several candidates to test for functionality in Aim 2.2. I will test 6 to 10 candidates for functionality using CRISPRi and RNA depletion via hammerhead ribozyme to target transcription and RNA level separately. This will determine if antisense transcription functions to repress sense transcription in Q. - - -### QE proposal *Background and Significance* -¶1 -... - -¶2 -... - -¶3-5: *Conserved Nuclear Surveillance Factor TRF4 is Essential to Q Entry* -... -```txt -The following is a note from me: -``` -She refers to *"the fibroblast model of quiescence"* a few times: what is this? - -From the abstract of the paper on it, [Johnson, Robinson, and Coller, *BMC Genomics* 2017](https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3521-0): -*Background* -Quiescence, reversible exit from the cell division cycle, is characterized by large-scale changes in steady-state gene expression, yet mechanisms controlling these changes are in need of further elucidation. In order to characterize the effects of post-transcriptional control on the quiescent transcriptome in human fibroblasts, we determined mRNA decay rates for over 10,000 genes using a transcription shut-off time-course. - -*Results* -We found that ~500 of the genes monitored exhibited significant changes in decay rate upon quiescence induction. Genes involved in RNA processing and ribosome biogenesis were destabilized with quiescence, while genes involved in the developmental process were stabilized with quiescence. Moreover, extracellular matrix genes demonstrated an upregulation of gene expression that corresponded with a stabilization of these transcripts. Additionally, targets of a quiescence-associated microRNA (miR-29) were significantly enriched in the fraction of transcripts that were stabilized during quiescence. - -*Conclusion* -Coordinated stability changes in clusters of genes with important functions in fibroblast quiescence maintenance are highly correlated with quiescence gene expression patterns. Analysis of miR-29 target decay rates suggests that microRNA-induced changes in RNA stability are important contributors to the quiescence gene expression program in fibroblasts. The identification of multiple stability-related gene clusters suggests that other posttranscriptional regulators of transcript stability may contribute to the coordination of quiescence gene expression. Such regulators may ultimately prove to be valuable targets for therapeutics that target proliferative cells, for instance, in cancer or fibrosis. -```txt -Back to Alison: -``` -¶6-X: *Regulatory Noncoding Transcription in Quiescence* -Pervasive transcription is a conserved feature of the eukaryotic transcriptome from yeast to humans. In S. cerevisiae ~75% of the genome is comprised of annotated genes, and at least 85% is transcribed.3 -```txt -What is reference 3? Seems important... - -The following is text from me: -``` -Reference 3 is [David et al. (Steinmetz), *PNAS* 2006](https://www.pnas.org/doi/10.1073/pnas.0601091103) - -From its abstract: -There is abundant transcription from eukaryotic genomes unaccounted for by protein coding genes. A high-resolution genome-wide survey of transcription in a well annotated genome will help relate transcriptional complexity to function. By quantifying RNA expression on both strands of the complete genome of *Saccharomyces cerevisiae* using a high-density oligonucleotide tiling array, this study identifies the boundary, structure, and level of coding and noncoding transcripts. A total of 85% of the genome is expressed in rich media. Apart from expected transcripts, we found operon-like transcripts, transcripts from neighboring genes not separated by intergenic regions, and genes with complex transcriptional architecture where different parts of the same gene are expressed at different levels. We mapped the positions of 3′ and 5′ UTRs of coding genes and identified hundreds of RNA transcripts distinct from annotated genes. These nonannotated transcripts, on average, have lower sequence conservation and lower rates of deletion phenotype than protein coding genes. Many other transcripts overlap known genes in antisense orientation, and for these pairs global correlations were discovered: UTR lengths correlated with gene function, localization, and requirements for regulation; **antisense transcripts overlapped 3’ UTRs more than 5’ UTRs**; **UTRs with overlapping antisense tended to be longer**; and **the presence of antisense associated with gene function**. These findings may suggest a regulatory role of antisense transcription in *S. cerevisiae*. Moreover, the data show that even this well studied genome has transcriptional complexity far beyond current annotation. -```txt -Back to Alison: -``` -... Annotation of \[cryptic transcription\] has been done largely by removing RNA surveillance factors/chromatin modifiers and annotating the resulting stabilized transcripts. - -These include XUTs33 (Xrn1 unstable transcripts), CUTs20,34,35 (Cryptic Unstable Transcripts, Rrp6 and/or Trf4), NUTs36 (Nrd1 Unterminated Transcripts), SUTs37 (Stable Unannotated Transcripts), and SRATs38 (Set2 repressed antisense transcripts). - -While annotation has been widespread, most of these units of transcription have not been studied functionally. -```txt -If the annotation is widespread, are there .gtf files (or the like) that we can get hold of? -``` - -The extent to which cryptic transcription is functional remains a matter of debate. Antisense transcription has been found to be a weak regulator of protein levels – regulating ~25% of 188 tested transcripts, though this may be the result of condition specific regulation.4 - -¶7 -***The loss of RNAi in the evolution of S. cerevisiae has resulted in an expansion of antisense lncRNA.39*** - -However, this mechanism of regulation does persist in species with RNAi.40 Antisense transcription has been repeatedly been found to be a regulator of cell fate and metabolic state in budding yeast. This regulation acts in *cis*, as functional transcription rather than as functional RNA product. For example, IME4 is regulated by an antisense transcription which determines meiotic entry.41 At the Gal locus, antisense transcription contributes to inhibition of *GAL10* and *GAL1* in the absence of galactose.42 Additionally, a number of Q expressed mRNAs are repressed by antisense RNAs during logarithmic growth, and one locus, *PET10* was shown to function in *cis*.43 Further, some antisense transcription has been shown to be conserved across 5 yeast species, separated by 150 million years of evolution.8 - -¶8 -While there are examples of functional antisense loci, to date there have not been any clear functional antisense RNAs found in *S. cerevisiae*. Instead, antisense ncRNA in budding yeast has been found to function on the level of transcription, by transcription interreference. Transcriptional interference is transcription that functions to block other transcription either by promotor competition, occlusion, or collision.44 *PHO84* was originally thought to be an example of a functional transcript, as the stabilization of its antisense RNA in *rrp6Δ* led to a decrease in sense transcription.45 However, further study showed that *rrp6Δ* has PolII termination defects, and thus *PHO84* sense transcription was found to be regulated by antisense transcription activity and not by functional antisense RNA product.46 While some antisense transcription has been studied, it is likely there are yet undiscovered roles for this pervasive transcription. Much of \[antisense\] transcription may only be regulatory in some conditions; at *GAL1* and *GAL10*, antisense RNA is spurious in the presence of galactose and functional only in its absence.42 -```txt -The above paragraph describes the distinction between antisense regulation ("functional antisense loci") via - - (a) antisense transcription activity - - (b) functional antisense RNA product - -...and there are no "clear" examples of the latter in S. cerevisiae - -Also, "budding yeast" is a synonym for S. cerevisiae; see "Reproduction" in en.wikipedia.org/wiki/Yeast -``` - -¶9 -In Aim 1, I will determine how steady state RNA levels change though Q entry, and the essential role TRF4 plays in this process. In Aim 2, I will annotate unique noncoding and antisense transcripts in Quiescence and test candidates for functionality. - - -### QE proposal *Approach* - -#### Aim 1: Determine Function of Nuclear Exosome Cofactor *TRF4* in Quiescence Entry -... - - -##### Aim 1.1: Which transcripts misregulated by TRF4 are most essential to Q entry? -... - - -###### Aim 1.1: Expected Outcomes -... - - -###### Aim 1.1: Pitfalls and Alternative Approaches -... - - -##### Aim 1.2: What are the consequences of undegraded RNAs in Q entry? -... - - -###### Aim 1.2: Expected Outcomes -... - - -###### Aim 1.2: Pitfalls and Alternative Approaches -... - - -##### Aim 1.3: What effect does *trf4Δ* have on transcription in Q entry? -... - - -###### Aim 1.3: Expected Outcomes -... - - -###### Aim 1.3: Pitfalls and Alternative Approaches -... - - -#### Aim 2: Investigate Functional Antisense Transcription in Quiescence -Functional antisense RNAs have been a challenge to find and characterize. Quiescence provides a unique cell state with the possibility of enriching for such functional transcripts. This is because antisense transcripts have repeatedly been linked to regulation of cell fate, and Q has widespread induction of antisense RNA. Further, antisense transcription regulation is a promising candidate for regulation of quiescence due to ties to metabolic and cell state, as well as evolutionary conservation. We have found in Q an increase in noncoding transcription in general, and antisense transcription specifically. I hypothesize that antisense transcription regulates key loci via transcriptional interference to help maintain quiescent genome off state. - - -##### Aim 2.1: Nascent RNA sequencing and Annotation of Quiescent Transcriptome -¶1 -In order to understand transcription in quiescence, I performed nascent RNA sequencing on quiescent and G1 arrested yeast. Q cells in water or G1 arrested cells in media were given 4tU for 6 minutes before being snap frozen. Labeled K. lactis cells were added at the time of RNA extraction as a spike-in. 40 ng of RNA was then conjugated to biotin, which preferentially binds with the sulfur on 4tU. Nascent RNA is then enriched for by bead pull down, which pulls down biotinylated nascent RNA. Both input (steady state) and pulled down (nascent) RNA were then library prepped and sequenced using the strand specific kit. - -¶2 -Preliminary analysis shows ~600 of a total 6600 yeast genes have differentially expressed antisense transcription compared to G1. Antisense transcription represents 2-3% of total aligned nascent reads, about double that of G1. Antisense and sense transcription are not mutually exclusive, and many loci are transcribed in both directions. - -¶3 -Genome annotation in yeast has largely been performed in log cells. Therefore, units of transcription unique to Q have not been annotated. I will annotate transcription *de novo* using Stringtie. I will use stringent gating to make sure transcripts are significantly enriched above expression in G1. -```txt -#QUESTION What does this ("stringent gating") mean? -``` -Additionally, I will assess antisense transcription. I will quantify the extent of antisense transcription, and to what extent it anti-correlates to sense transcription. -```txt -#QUESTION Quantify antisense transcription how? -``` -Once annotation is complete, I will classify transcripts. For antisense transcripts I will classify by length and stability. For length there will be 3 categories: 3’ end only, full gene and into sense promotor. For stability, I will determine if transcripts are rapidly degraded or not; if a transcript is not above a certain threshold in input, it will be classified as rapidly degraded. -```txt -Antisense transcript classification schema: - I. By length - a. 3’ end only - b. full gene - c. into sense promotor - II. By stability: "if a transcript is not above a certain threshold in input, it will be - classified as rapidly degraded" - -#QUESTION For II, what is the input? How will it be measured, assessed, and thresholded? -``` - -¶4 -Based on this analysis I will select candidate antisense transcription units to test for functionality in Aim 2.2. I will use several criteria to assess what transcripts are of most interest. These are high antisense transcription, uniqueness to Q, and potential biological effect on Q if sense strand is transcribed. I will further favor candidates which either extend across the full length of sense gene or where shorter 3’ transcript looks like it could be inducing early termination of sense transcription. I will include some transcripts which are rapidly degraded, and some which are not; since I hypothesize that transcription rather than the RNA itself is functional, a transcript need not be stable to be of interest. -```txt -I. Schema for assessing "the interest" of antisense transcripts: - a. high antisense transcription - b. uniqueness to Q - c. potential biological effect on Q if sense strand is transcribed - -II. Home in on candidates from the above that... - a. extend across the full length of sense gene - b. appears to be "shorter 3’ transcript [that] looks like it could be inducing early - termination of sense transcription" - -#QUESTION How is antisense transcription evaluated to be "high" in Ia? -#QUESTION How to assess Ic? -#QUESTION How can you tell IIb just by looking at IGV tracks? You see the end of sense - transcription in the 3' UTR together with the antisense transcription specific - to/overlapping the 3' UTR? -``` - -¶5 -Since antisense RNAs are often transcribed alongside sense and often result from tandem genes, where antisense could easily represent leaky transcription. This phenomenon is illustrated in figure 3; these three loci contribute to regulation of metabolic state (*HIS1* and *MIG2*) or function in mating (*SAG1*). While antisense RNA may be spurious rather functional, the fact that many genes have functions in metabolism and cell state is a promising indication that they may function to repress sense transcription. I will further enrich for functionality by selecting antisense RNAs with unique pre-initiation complexes. I will do CUT&RUN of core transcription factor TFIIB. I will then pick candidates enriched for those with TFIIB sites distinct from sense transcripts, as this implies a uniquely regulated locus. -```txt -Here, Figure 3 is a mistake and means Figure 4, I think - -#QUESTION The term "tandem genes" returns multiple definitions when I Google it: What does - Alison mean when she writes it here? -#QUESTION How to determine "antisense RNAs with unique pre-initiation complexes"? From the - literature? Or the subsequent TFIIB thing? Both? -``` - -###### Aim 2.1: Expected Outcomes -I expect to identify 6-10 strong candidate antisense RNAs based on the approach outlined above. - - -###### Aim 2.1: Pitfalls and Alternative approaches -4tU sequencing data is high quality, and there is strong correlation between biological replicates and to similar data generated by former lab members. The biggest challenge is selecting candidate transcripts most likely to have regulatory functions. I have already identified some exciting loci. However, if further analysis suggests this phenomenon is not functional, I will shift focus to understand how the chromatin environment in Q results in a higher fraction of pervasive transcription (Future Directions). -```txt -#QUESTION Do we have data on the quality of the 4tU datasets? My understanding is that these - have not been done yet? -#QUESTION Are there data on the evaluation (e.g., correlation) of Alison's data with similar - data from other lab members? -``` - - -##### Aim 2.2: Transcriptional interference in Quiescence -... - - -###### Aim 2.2: Expected Outcomes -... - - -###### Aim 2.2: Pitfalls and Alternative approaches -... - - -### QE proposal *Future Directions* -In the future, I would like to see when functional antisense RNAs come on in Q entry; this may be observable in RNA seq data generated in Aim 1 or via strand specific RT-qPCR at specific loci. Additionally, to further understand how the Q chromatin environment contributes to noncoding transcription, I will compare antisense transcripts to features already ChIPed by our lab and others to see how the chromatin environment in quiescence specifically promotes widespread antisense transcription. This along with additional bioinformatic analysis such as motif analysis, as well as analysis of gene orientation has the potential to reveal organizing principles of antisense transcription in Q. - - -### QE proposal *Rigor and Reproducibility* -... - - -### QE proposal *Innovation* -... -
-
- - -## Reading through Alison's Research Summary, Spring 2022 - -### Role of Nuclear Exosome co-factor Trf4 in Quiescence Entry -¶1 -I sequenced steady state RNA from *trf4∆* and parental strains through quiescence entry. Additionally, I grew *rrp6∆* strains in parallel. Since *RRP6* functions in the same pathway as *TRF4*, but with much less dramatic effects on Q entry, this provided a key control to understand which RNAs are most relevant to Q entry. Overall, the transcriptome between *trf4∆* and *rrp6∆* are much more similar to each other and to the parental control than I anticipated. I hypothesized that TRF4 functioned mainly to degrade growth mRNAs in Q entry, which was consistent with previous work done in rapid nutrient downshift. While hundreds of mRNAs are preferentially stabilized, those defects are less dramatic in *trf4∆* than *rrp6∆*, and don’t seem to target pathways that would affect Q. Instead, I have found a handful mRNAs which regulated phosphate and nitrogen metabolism are down in *trf4∆* two hours before the diauxic shift (DS). Coordinating the starvation response of multiple nutrients is necessary for entry into quiescence, so this is potentially explanatory of the phenotype we observed. By 24 hours after the DS, *trf4∆* overexpresses a number of glucose transporters despite having exhausted glucose 24 hours prior. My current working hypothesis is that failure to coordinate nutrient starvation response early in Q entry results in a cellular state incompatible with quiescence for *trf4∆*. - -¶2 -However, this opens a new line of questioning: how is the deletion of an RNA decay protein resulting in less transcript not more? My immediate next step is to use nascent RNAseq to understand if this is change in RNA abundance is being driven by more decay or less transcription in the absence of Trf4. - - -### Nascent Transcription in Quiescence Project -¶1 -Annotation of unique quiescent transcripts is complete, and I have identified 5447 transcripts. When compared to an annotation file with 14623 annotated yeast transcripts, 1699 transcripts had no overlap on the same strand with anything previously annotated. This annotation was therefore ~31% “totally unique”. Trinity, the program which performed the initial annotation, is very sensitive, so some of these 5000 transcripts are very low level, and some are fragmented. Using DeSeq2, with cut offs of log2 fold change >2 and adjusted p-value < .05, 61% of newly annotated transcripts are overexpressed in Q compared to G1 arrested cells. - -¶2 -My focus since the completion of this annotation has been seeking to define classes of transcripts as well as to determine which are of highest interest for further study. My annotations include 1275 intergenic transcripts, 673 extended transcripts (transcripts which are 200 bp extended in either the 3’ or 5’ direction compared to their SGD annotation), and approximately 1700 antisense transcripts. As I was breaking the main annotations into general classes, I noticed three main classes of antisense transcripts which I have been investigating in further detail. - -¶3 -Those three classes of antisense transcripts are defined by their promoters (see Figure 1). Class 1 transcripts originate from tandem intergenic regions; the promoter for the adjacent sense transcript is near that of the antisense. Class 2 antisense transcripts arise from convergent intergenic regions where less efficient transcription termination results in the 3’ end of the sense transcript becoming antisense to its neighbor. Finally, Class 3 antisense transcripts arise from the general location of transcript termination for the sense transcript. These originate from genes with large 3’ intergenic regions. By my current estimates, there are 533 Class 1 transcripts, 217 Class 2 intergenic regions, and 286 Class 3 transcripts. - -¶4 -I have spent a great deal of time computationally analyzing these three classes of transcripts. Previous lab members have profiled the chromatin state in Q including H3-ChIP, MNase seq, TFIIB ChIP and ChIP of every chromatin remodeler in Q. Using this data as well GO terms and expression data, I failed to find a smoking gun which suggests which transcripts are most likely to be functional. To identify antisense transcripts that have effects on mRNAs, I will next deplete Nrd1 in Q cells to increase antisense transcription, and using Nascent RNAseq determine which mRNAs go down when their corresponding antisense transcript goes up. diff --git a/results/2022-1101/notes-RNA-seq-spike-ins.md b/results/2022-1101/notes-RNA-seq-spike-ins.md deleted file mode 100644 index 02a9a9e..0000000 --- a/results/2022-1101/notes-RNA-seq-spike-ins.md +++ /dev/null @@ -1,575 +0,0 @@ - -`#2022-11` -
-
- -
-Table of Contents - - -1. [RNA-seq: Information on `bamCoverage`, spike-ins with `DESeq2`](#rna-seq-information-on-bamcoverage-spike-ins-with-deseq2) - 1. [Looking into the use of `bamCoverage` with RNA-seq data](#looking-into-the-use-of-bamcoverage-with-rna-seq-data) - 1. [Looking into the use of spike-ins prior to running `DESeq2`](#looking-into-the-use-of-spike-ins-prior-to-running-deseq2) - 1. [Related email from me to Alison](#related-email-from-me-to-alison) - 1. [Moving forward](#moving-forward) - 1. [Related email from me to Alison](#related-email-from-me-to-alison-1) -1. [On how to use `DESeq2` with KL-normalized data](#on-how-to-use-deseq2-with-kl-normalized-data) - 1. [First message to Mike Love, author of DESeq2](#first-message-to-mike-love-author-of-deseq2) - 1. [Second message to Mike Love, author of DESeq2](#second-message-to-mike-love-author-of-deseq2) - 1. [Final](#final) - 1. [Second](#second) - 1. [Original](#original) - 1. [Message fr/AG](#message-frag) - 1. [More message w/AG regarding normalization](#more-message-wag-regarding-normalization) - 1. [Messages with Matt and AG regarding UMI deduplication](#messages-with-matt-and-ag-regarding-umi-deduplication) - 1. [Another one for UMIs](#another-one-for-umis) - 1. [Another UMI one](#another-umi-one) - 1. [Notes from discussing things with AG as I put together the first message to `Bioconductor`/Mike Love](#notes-from-discussing-things-with-ag-as-i-put-together-the-first-message-to-bioconductormike-love) -1. [Open tabs related to QC `#TBO`](#open-tabs-related-to-qc-tbo) -1. [Links `#TBO`](#links-tbo) - 1. [Materials examined when formulating `Bioconductor` posts](#materials-examined-when-formulating-bioconductor-posts) - 1. [`Bioconductor` posts](#bioconductor-posts) - 1. [`DESeq2` vignette](#deseq2-vignette) - 1. [`rdrr.io`](#rdrrio) - 1. [`Biostars`](#biostars) - 1. [Material to further look into](#material-to-further-look-into) -1. [Email chains `#TBO`](#email-chains-tbo) - - -
-
- - -## RNA-seq: Information on `bamCoverage`, spike-ins with `DESeq2` - -### Looking into the use of `bamCoverage` with RNA-seq data - -`#TODO` Return to this line of thinking later; for now, focus on PCR deduplication using `umi_tools` and the UMI-containing `.fastq` files from FHCC Bioinformatics -- [Purpose of bamCoverage RPKM normalization methods](https://www.biostars.org/p/9474318/) -- [bamCoverage and RNA-seq data](https://github.com/deeptools/deepTools/issues/401) -- [Normalization with deepTools](https://www.biostars.org/p/473442/) - + This is super useful! - + Referenced in the above post as, essentially, what to do: [ATAC-seq sample normalization](https://www.biostars.org/p/413626/#414440) - * No worries: The principles hold for the bin-based normalization of RNA-seq data too - * A reference within this post that I should check over: [Normalizing for technical biases](http://bioconductor.org/books/3.13/csawBook/chap-norm.html) - - "There is a great chapter in Aaron Lun's `csaw` book on normalization in the ChIP-seq (which applies to ATAC-seq as well) context that discusses the various aspects to consider..." - + Also referenced in the above as "more details of the different normalization methods of bamCoverage": [Deeptools sample scaling](https://www.biostars.org/p/167950/) - + Also referenced in the above is [bamCoverage and RNA-seq data](https://github.com/deeptools/deepTools/issues/401) - - -### Looking into the use of spike-ins prior to running `DESeq2` -`#TODO` Write up notes later -- [estimateSizeFactors](https://rdrr.io/bioc/DESeq2/man/estimateSizeFactors.html) -- [Incorporating spike-ins to RNA-seq analysis](https://support.bioconductor.org/p/9143354/) -- [DESeq2 estimateSizeFactors with control genes](https://support.bioconductor.org/p/115682/) -- [...from the DESeq2 vignette](https://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#control-features-for-estimating-size-factors) -- [Bioconductor post on how to refer to the spike-in genes when calling `estimateSizeFactors()`](https://support.bioconductor.org/p/103826/) -- [Another Bioconductor post on how to call `controlGenes`](https://support.bioconductor.org/p/130660/) -- [Nice, simple explanation of `controlGenes` and its purpose in this Biostars post](https://www.biostars.org/p/400532/#400543) - - -#### Related email from me to Alison -From: [Alavattam, Kris](kalavatt@fredhutch.org) -Date: Thursday, November 3, 2022 at 1:39 PM -To: [Greenlaw, Alison C](agreenla@fredhutch.org) -Subject: FW: A question and a thought - -Did a bit more reading: seems like calling `DESeq2::estimateSizeFactors()` with the `controlGenes` option set to our KL genes can be the way to go. - -So, in that case... -1. when we call the script to split the bam by species, we should output, for each condition, bam files that contains both SC and KL (we should continue to filter out 20S, right?) -2. when we call `DESeq2::estimateSizeFactors()`, we should set the `controlGenes` option to refer to only the KL genes in our dds object; then, when size factors are determined, DESeq2 is going to run calculations that assume KL gene expression is unchanging between conditions -3. the size factors will continue to pertain only to the SC genes (for each condition) and be affected by the unchanging-KL-gene-expression assumption -4. this seems legit to me - -Let’s try it out! I’ll start working on it after my lunch. - --Kris - - -#### Moving forward -I sent these links to Alison, who will move forward with implementing this. - - -##### Related email from me to Alison -From: [Alavattam, Kris](kalavatt@fredhutch.org) -Date: Thursday, November 3, 2022 at 2:32 PM -To: [Greenlaw, Alison C](agreenla@fredhutch.org) -Subject: More thinking about estimateSizeFactors with controlGenes - -While walking around, it occurred to me that you could filter the counts matrix to keep only *K. lactis* genes with row sums above some cutoff or with a row mean higher above some cutoff, which could help to ensure the filtering out of low-expression/high-variance genes. You could even calculate row standard deviation too and keep it below some cutoff to ensure that you’re working with genes that don't vary much from sample to sample. -
-
- - -## On how to use `DESeq2` with KL-normalized data - - -### First message to Mike Love, author of DESeq2 -[Link](https://support.bioconductor.org/p/9149000/) - -Hi, - -I am working with colleagues to perform differential expression analyses using data that have been spiked with RNA from another species, the purpose of which is to get a sense of the absolute numbers of transcripts that are up and down between conditions. We add the spike-in at the cell stage, prior to the steps of library generation, so the working assumption is that any features or quirks of library generation are equally reflected in the sample and spike-in information. - -My question is, "What is the appropriate way to use this spike-in information with DESeq2?" Is it appropriate to use the spike-in information with the DESeq2::estimateSizeFactors() controlGenes argument (e.g., including the thousands of genes for this other species in the counts matrix that is supplied to DESeq2, then supplying the other-species gene names as a vector to the controlGenes)? When following this approach and subsequently running DESeq2::DESeq(), I believe the genes for the other species remain in the counts matrix and are included in the tests for significance, multiple hypothesis testing, etc. So, we should somehow exclude these genes from the counts matrix in the DESeqDataSet object prior to running DESeq2::DESeq()—is that correct? - -Another thing we've considered is calculating and applying a simple sample-wise scaling factor prior to running DESeq2 as follows: -1. We calculate a scaling factor for the experiment (EXP) condition: x = (no. EXP sample reads)/(no. EXP spike-in reads) -2. We calculate a scaling factor for the control (CTRL) condition: y = (no. CTRL sample reads)/(no. CTRL spike-in reads) -3. We take a counts matrix such and we divide the sample counts by the corresponding scaling factor, e.g., -```txt -gene EXP CTRL -A 5 10 -B 15 100 -C 0 2 -etc. - -# The above becomes... -gene EXP CTRL -A 5/x 10/y -B 15/x 100/y -C 0/x 2/y -etc. -``` -4. We then use the adjusted counts matrix as input for DESeq2. - -Does this seem appropriate to you? (However, I don't think DESeq2 accepts non-integer counts in the counts matrix.) - -We'll greatly appreciate any input or advice you can give us. Thank you! - --Kris - - -### Second message to Mike Love, author of DESeq2 - -#### Final -[Link](https://support.bioconductor.org/p/9149231/) - -Hi, - -I want to clarify what is going on under the hood when a user runs `DESeq2::estimateSizeFactors()` with the `controlGenes` argument. So, if my understanding is correct, all the steps of size-factor estimation take place, except they are applied only to the genes assigned to `controlGenes` (except for the final step, which is to apply the calculated size factor to all sample-wise genes) rather than the default of all genes supplied to `DESeq2::estimateSizeFactors()`—is that right? - -*A related follow up question:* Are there any circumstances in which a user that has spike-in `controlGenes` for their samples would ***not*** want to use them? - -Thanks, -Kris - - -#### Second -Hi, - -I want to clarify what is going on under the hood when a user runs `DESeq2::estimateSizeFactors()` with the `controlGenes` argument. So, if my understanding is correct, all the steps of size-factor estimation take place, except they are applied only to the genes assigned to `controlGenes` (except for the final step, which is to apply the calculated size factor to all sample-wise genes) rather than the default of all genes supplied to `DESeq2::estimateSizeFactors()`—is that right? - -A related follow up question: Are there any circumstances in which a user that has spike-in controlGenes for their samples would not want to use them? - -For example, we have both *nascent* and *steady-state* RNA-seq data for cycling cells (**C**) and non-cycling cells (**N**). The four samples are spiked with cells from a different species, and these spike-in cells are cycling. We want to perform differential gene expression analyses for **N** versus **C**. We know ahead of time that **N** has markedly lower and different transcription than **C**. They think that it is not appropriate to use the spike-in cells (which are cycling) for `controlGene`-styled size-factor estimation because of this comparison between non-cycling and cycling cells. My thinking is that, because they're expected to be stable across conditions, they ***should*** be used for *steady-state* **N** versus *steady-state* **C**, and *nascent* **N** versus *nascent* **C**. Is this reasonable? - -What I am less sure about is steady *steady-state* **N** versus *nascent* **C**, and *nascent* **N** versus *steady-state* **C**—because I am not sure that *nascent* and *steady-state* transcription in the spike-ins is stable across conditions. Is this a situation where a user would not want to use the `controlGene`s? - -Thanks, -Kris - - -#### Original -Hi, - -I want to clarify what is going on under the hood when a user runs `DESeq2::estimateSizeFactors()` with the `controlGenes` argument. So, if my understanding is correct, all the steps of size-factor estimation take place, except they are applied only to the genes assigned to `controlGenes` (except for step 7 below, which is applied to all sample-wise genes) rather than the default of all genes supplied to `DESeq2::estimateSizeFactors()`—is that right? - -So, put another way, use the `controlGenes`, rather than all genes, to do the following steps: -1. log-transform values -2. average e/row (geometric mean) -3. filter out genes with undefined values -4. subtract row-wise geometric mean fr/log-transformed values -5. take sample-wise median -6. transform median from log to "normal"; resulting value is the scaling factor -7. for each sample, divide original read count by the related scaling factor - -*A related follow up question:* Are there any circumstances in which a user that has spike-in `controlGenes` for their samples would ***not*** want to use them? - -For example, my colleagues have generated RNA-seq data for cycling cells (**C**) and non-cycling cells (**N**). Both samples are spiked with cells from a different species, and these spike-in cells are cycling. We want to perform differential gene expression analyses for **N** versus **C**. We know ahead of time that **N** has markedly lower and different transcription than **C**. They think that it is not appropriate to use the spike-in cells (which are cycling) for `controlGene`-styled size-factor estimation because of this comparison between non-cycling and cycling cells. Is this indeed a situation where a user would not want to use `controlGene`-styled size-factor estimation? - -Thanks, -Kris - - - -### Message fr/AG -https://support.bioconductor.org/p/88763/ - -This suggests `EdgeR` is better for non-integer counts. I am going mess around with getting `EdgeR` to run in case this is the approach we want. - -Alison - - - -### More message w/AG regarding normalization -Message submitted to the `Bioconductor` forum, which is frequented by Mike Love, the author of DESeq2: https://support.bioconductor.org/p/9149000/ - -From: Greenlaw, Alison C -Date: Monday, January 23, 2023 at 11:12 AM -To: Alavattam, Kris -Subject: Re: Deseq2 math (is confusing) - -That’s great news, as I have been thinking about this a lot. Looking forward to another perspective! - -Alison - -From: Alavattam, Kris -Sent: Monday, January 23, 2023 11:09:17 AM -To: Greenlaw, Alison C -Subject: Re: Deseq2 math (is confusing) - -Hi Alison, - -Talked with Toshi about it a bit this morning. Probably easier to just chat about this stuff together when you come in. - -Thanks, -Kris - - -From: Greenlaw, Alison C -Date: Friday, January 20, 2023 at 6:44 PM -To: Alavattam, Kris -Subject: Deseq2 math (is confusing) - -Hi Kris - - -This is definitely not urgent, but it's something I am puzzling through and wanted to get my thoughts out on paper about. - -There is a big discrepancy based on if I provided size factors or if I let DeSeq2 calculate size factors based on "control genes". I have figured out the reason behind this discrepancy, but I am not sure which way is more correct. - -The imagined role of size factors is to account for library size, and is usually calculated by taking sum of reads. This way, smaller libraries get smaller size factors - it's essentially a denominator for analysis so counts from small libraries have a small denominator and large have a large one - this way differential gene expression can be done across library sizes. - -So when using "control genes", if we set this multiplier based on the control gene(s) of choice. If for example, sample 1 has 500 counts for control gene 1 and sample 2 has 1000 than, the size factor for sample 1 would be .5 and the size factor for 2 would be 1. So when I feed in KL total counts as control genes (or a handful of KL genes, the results are similar), it is taking that KL amount, and setting it as an indicator of library size and adjusting all counts up or down based on this control gene amount. - -When I provide size factors, I calculate the ratio of SC to KL, and then the ratio between samples, so both change in SC and change in KL are accounted for in that number. I think this matters because I don't have the same about of read depth in SC for each sample. - -I think method 2 might be better, but I am unsure. It certainly provides more conservative results that Toshi trusts more. - -No rush on this but I wanted to articulate the problem while I had a good understanding of it. - -Alison - - - -### Messages with Matt and AG regarding UMI deduplication -Ah, I understand. Thanks for explaining! - --Kris - -From: Fitzgibbon, Matthew P -Date: Friday, January 20, 2023 at 3:39 PM -To: Alavattam, Kris , Greenlaw, Alison C -Subject: Re: UMI question + small update - -Hi Kris, No, the "/shared/ngs/illumina" volume is really just a hallucination, induced by a piece of software called the automounter. The data really live in Tsukiyama Lab "fast" storage, on a big NAS produced by Dell / Isilon. For example, these two paths: - -```txt -/shared/ngs/illumina/agreenla/210216_D00300_1177_BHKCHKBCX3/Unaligned_UMIs/Project_agreenla/ -/fh/fast/tsukiyama_t/SR/ngs/illumina/agreenla/210216_D00300_1177_BHKCHKBCX3/Unaligned_UMIs/Project_agreenla/ -``` -point to the same underlying data. You can think of that second form as the "real" location of the data, and that one will be easier to get to via Samba mounts, "net use" on Windows, etc. - -Best, --Matt - -From: Alavattam, Kris -Sent: Friday, January 20, 2023 3:29 PM -To: Fitzgibbon, Matthew P ; Greenlaw, Alison C -Subject: Re: UMI question + small update - -Thanks, Matt! That’s good to know. I will keep your message in my records for plannedanalyses with some of these older data. Just for my own knowledge: the directories where you keep the data—the /shared/ngs/illumina/* directories—are they temporary and do we need to move the files out of there? - -Thanks, -Kris - -From: Fitzgibbon, Matthew P -Date: Friday, January 20, 2023 at 3:20 PM -To: Greenlaw, Alison C -Cc: Alavattam, Kris -Subject: Re: UMI question + small update - -Hi Alison & Kris, This discussion prompted me to go back through previous Tsukiyama Lab runs to check for UMIs that may have been masked. I found one old HiSeq run for Christine (/shared/ngs/illumina/ccucinot/200128_D00300_0897_BHCHGFBCX3) that is annotated as Ovation SoLo but did not seem to have UMI reads generated in that same directory at all. I've redone the demultiplexing for that run and placed in an Unaligned_UMI folder. - -All of the other runs that I found with 16bp index reads appear to have R2 files that contain unmasked UMIs as hoped. I checked the following runs: - -```txt -/fh/fast/tsukiyama_t/SR/ngs/illumina/agreenla/210216_D00300_1177_BHKCHKBCX3/Unaligned_UMIs/Project_agreenla/ -/fh/fast/tsukiyama_t/SR/ngs/illumina/agreenla/220414_VH00699_101_AAAWYTFM5/Unaligned_UMI/Project_agreenla/ -/fh/fast/tsukiyama_t/SR/ngs/illumina/agreenla/221010_VH01189_10_AAC57JMM5/Unaligned/Project_agreenla/ -/fh/fast/tsukiyama_t/SR/ngs/illumina/agreenla/221220_VH00699_238_AACH7FFM5/Unaligned/Project_agreenla/ -/fh/fast/tsukiyama_t/SR/ngs/illumina/ccucinot/180814_D00300_0588_AHKTYJBCX2/Unaligned/Project_ccucinot/ -/fh/fast/tsukiyama_t/SR/ngs/illumina/ccucinot/180816_D00300_0592_AHKHHNBCX2/Unaligned/Project_ccucinot/ -/fh/fast/tsukiyama_t/SR/ngs/illumina/ccucinot/200128_D00300_0897_BHCHGFBCX3/Unaligned_UMI/Project_ccucinot/ -/fh/fast/tsukiyama_t/SR/ngs/illumina/ccucinot/200722_D00300_1007_BHGV5NBCX3/Unaligned_UMI/Project_ccucinot/ -/fh/fast/tsukiyama_t/SR/ngs/illumina/jgessama/180316_SN367_1132_BHF3YTBCX2/Unaligned/Project_jgessama/ -/fh/fast/tsukiyama_t/SR/ngs/illumina/mspain/171117_SN367_1068_BH2VNMBCX2/Unaligned/Project_mspain/ -/fh/fast/tsukiyama_t/SR/ngs/illumina/mspain/180123_SN367_1095_AH7M5FBCX2/Unaligned/Project_mspain/ -/fh/fast/tsukiyama_t/SR/ngs/illumina/sswygert/180814_D00300_0588_AHKTYJBCX2/Unaligned/Project_sswygert/ -/fh/fast/tsukiyama_t/SR/ngs/illumina/sswygert/180816_D00300_0592_AHKHHNBCX2/Unaligned/Project_sswygert/ -``` -Let me know if there are any I missed or if data from older runs (e.g. `200128_D00300_0897_BHCHGFBCX3`) are still under active use in the lab. Would like to update anyone who might be interested. - -Cheers, --Matt - - -From: Greenlaw, Alison C -Sent: Thursday, January 19, 2023 12:50 PM -To: Fitzgibbon, Matthew P -Subject: Re: UMI question + small update - -Awesome! Thanks so much for all your help, Matt. I am glad we were able to recover the UMI information! - -Best, -Alison -From: Fitzgibbon, Matthew P -Sent: Thursday, January 19, 2023 10:27 AM -To: Greenlaw, Alison C -Cc: Alavattam, Kris -Subject: Re: UMI question + small update - -Hi Alison, - -A few different threads here, so will address a couple first: - -Found an additional demux setting that I think has successfully recovered the UMIs in those two runs. Basically, you have to explicitly tell the demultiplexer to not "mask" reads shorter than 35bp; we routinely set this to 8bp to prevent the UMIs from being converted to N's but in this case we also needed to change an adapter setting even though we're not doing adapter trimming. The _R2 files in these locations have been updated: - -```txt -/shared/ngs/illumina/agreenla/221010_VH01189_10_AAC57JMM5/Unaligned/Project_agreenla -/shared/ngs/illumina/agreenla/221220_VH00699_238_AACH7FFM5/Unaligned/Project_agreenla -``` -None of the other file content (e.g. the _R1 & _R3 reads) should have changed, but I copied everything over as a block anyway just to make sure none of the files get out of phase. - -Kris, was great to get to meet briefly this morning. The approach of using UMItools to append UMI to read name (then maybe breaking it out to a tag in the BAM file post-alignment) sounds like a good approach. Similar to what some of the single-cell pipelines, like cellranger, do internally. - -Not sure how this will work for de novo assembly, since need to assemble first, align back to your new transcriptome, then flag duplicates. I think there are "alignment-free" deduplication methods that consider UMIs but don't have recent experience with them. Here's one that a former member of our group used a few years back: https://github.com/vpc-ccg/calib - -Just for completeness, here is the old Ovation SoLo tool I mentioned when Alison & I talked: https://github.com/tecangenomics/nudup - -It hasn't seen any substantive update in about six years (and is python2) so the UMItools approach is almost certainly preferred. - -Let me know how the updated fastq files are looking! - -Best, --Matt - -Matt Fitzgibbon -Director, Bioinformatics Shared Resource -Fred Hutchinson Cancer Center -Seattle, WA 98109 -mfitzgib@fredhutch.org - -From: Greenlaw, Alison C -Sent: Wednesday, January 18, 2023 3:00 PM -To: Fitzgibbon, Matthew P -Cc: Alavattam, Kris -Subject: UMI question + small update - -Hi Matt - - -You mentioned when we talked last week that you might have a UMItools script somewhere from nugen. If you are able to find that, it could be great since Kris (CC'ed) is hoping to add that to our de novo annotation pipeline. - -You took a peek at my weird RNA seq last week, where one strand of one sample was generating a very large file. It looks like the weird sample (7078_IN) has a higher fraction of low quality alignments, and fewer alignments by total percentage of reads overall compared to other samples in the pool. We are thinking this is likely a technical issue since the 7078_PD sample (pull down aka nascent) does not seem to have this same issue--and these two barcodes were initially from one single frozen yeast cell pellet. - -I noticed the 7078_IN had 10% of the library pool, where all other samples were between 7.3 and 8.1%. Is there any way that reads that should have been undetermined got assigned to this sample? - -Kris and I are currently working to pull out the unaligned and low quality alignments and figure out the source. I was just curious is this issue might have occurred upstream or if you had any additional suggestions of this we could try. - -Thanks so much for all your help!! - -Best, -Alison - - -### Another one for UMIs -FWIW, some notes I began to take on handling spike-in normalization: -https://github.com/kalavattam/2022_transcriptome-construction/blob/main/results/2022-1101/notes-RNA-seq-spike-ins.md - - -From: Alavattam, Kris -Date: Thursday, January 19, 2023 at 12:11 PM -To: Greenlaw, Alison C -Subject: Re: UMI - -Let’s see, how about you move on to working with control genes—I’ll take a bit of time to test our options for UMI processing. - -Thanks, -Kris - -From: Greenlaw, Alison C -Date: Thursday, January 19, 2023 at 11:57 AM -To: Alavattam, Kris -Subject: Re: UMI - -I’m happy to try the next parts if you want to focus on others things. If you would rather finish it off , I will go back to figuring out control genes! - -Alison - -From: Alavattam, Kris -Sent: Thursday, January 19, 2023 11:33:38 AM -To: Greenlaw, Alison C -Subject: Re: UMI - -Looks like the info in the Biostars forum you found yesterday works: - -``` -❯ cd ~/tsukiyamalab/alisong/umi_test - -❯ zcat 5781_G1_IN_S5_R1.processed.fastq.gz | head -@D00300:1007:HGV5NBCX3:1:1103:1220:2169_GTCGCNNN 1:N:0:NTCGAGAA -TAAAGNGAAGGTACATGAAATGCAAAANTTGATTGGTCTAGCTTCATATG -+ -GGGGG#< -Date: Wednesday, January 18, 2023 at 4:38 PM -To: Alavattam, Kris -Subject: Re: UMI - -`~/tsukiyamalab/alisong/umi_test` - -From: Greenlaw, Alison C -Sent: Wednesday, January 18, 2023 4:23 PM -To: Alavattam, Kris -Subject: UMI - -https://www.biostars.org/p/357359/ -add UMI sequences to fastq read name - Biostar: S - - - -### Another UMI one -That’s great news! Thanks so much for your help! - -Alison - - -From: Alavattam, Kris -Sent: Thursday, January 19, 2023 9:50:52 AM -To: Greenlaw, Alison C -Cc: Tsukiyama, Toshio -Subject: Response from Matt regarding the UMI issue - - -Hi Alison, -cc Toshi - -Good news! Matt stopped by the lab this morning. He still has the raw sequencing data output by the Illumina sequencer, and he is working on resolving our issues now. It turns out that, for some reason he’s not entirely sure of, a certain parameter needed to have been set when he was doing the demultiplexing/UMI-generation work—even though this particular parameter did not need to be set with previous demultiplexing/UMI-generation work (e.g., the work associated with the WT-Q-vs-G1 and TRF4 datasets). - -He told me that the umitools strategy that you found on the Biostars forum yesterday is essentially the proper way to use that tool with these kinds of data (i.e., sequencing data organized in R1, R2, R3 files). Also, he’s also going to send us a link to the repo containing the tecan approach to UMI processing. He noted that, because the tecan approach is written in an outdated language (Python 2) and is no longer maintained by the authors, he recommends using the umitools approach. - -To make the work a little easier for him, I told him it’s OK to copy all the sequencing files to your directory wholesale (i.e., R1, R2, R3, I1, and I2) rather than just selectively copying R2 alone to specific directories within your project directories. From there, we can do clean up and reorganization for the project directories as necessary. - -We talked about the transcriptome assembly work a bit too, and I explained to Matt why I wanted to use these PCR duplicate-corrected files in our Trinity parameterization experiments. He understood and agreed with the reasoning. - -Anyway, we should expect to get the updated files and the link to the tecan repo sometime later today. - -Thanks, -Kris - - - -### Notes from discussing things with AG as I put together the first message to `Bioconductor`/Mike Love -We want to assess the significant differences in normalized EXP versus normalize CTRL, e.g., assigning - -Given that we've depleted a tx termination factor, many genes have increased tx; however, where to set is not functionally obvious. - - -Purpose of a spike-in: To account for the total amount of tx or RNA per cell is the same - -We do the spike-in at the cell level; any changes thereafter, we can theoretically hope that it'll be reflected in sequences for both, and we - - -Given our conditions, we suspect that genes are more upregulated than are downregulated, but how can we reasonably find the "unchanging points." Inputting these spike-in sequences with the controlGenes gives drastic results: More than half of all the genes in the genome are statistically significantly unregulated. This seems extreme to us, although it could be true. - -Suggestion that's mathematically appropriate and precise, rather than--just b/c it seems like this is not the norm for how people use DESeq2, and it's not easy to Google this and come up with an answer -
-
- - -## Open tabs related to QC `#TBO` -- [On converting `bam`s to `fastq`s](https://www.metagenomics.wiki/tools/samtools/converting-bam-to-fastq) -- [Alignment QC of RNA-seq data (Griffith Lab)](https://rnabio.org/module-02-alignment/0002/06/01/Alignment_QC/#) -
-
- - -## Links `#TBO` - -### Materials examined when formulating `Bioconductor` posts - -#### `Bioconductor` posts -- [`ControlGenes`/housekeeping genes `DESeq2`](https://support.bioconductor.org/p/130660/) - + Another Bioconductor post on how to call `controlGenes` -- [Normalize to a housekeeping gene in `DESEq2`](https://support.bioconductor.org/p/p133150/) -- [Housekeeping genes vary across contrast groups, using `DESeq2` on NanoString data](https://support.bioconductor.org/p/9141678/) -- [Incorporating spike-ins to RNA-seq analysis](https://support.bioconductor.org/p/9143354/) -- [`DESeq2` `estimateSizeFactors` with control genes](https://support.bioconductor.org/p/115682/) -- [`DESeq2` `estimateSizeFactors` `controlGenes` return an error](https://support.bioconductor.org/p/103826/) - + `Bioconductor` post on how to refer to the spike-in genes when calling `estimateSizeFactors()` - - -#### `DESeq2` vignette -- [Control features for estimating size factors](http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#control-features-for-estimating-size-factors) - - -#### `rdrr.io` -- [`estimateSizeFactors`](https://rdrr.io/bioc/DESeq2/man/estimateSizeFactors.html) - - -### `Biostars` -- [How to contrast gene expression level using like control some HouseKeeping Genes after a DEG using DESEQ2](https://www.biostars.org/p/400532/#400543) - + Nice, simple explanation of `controlGenes` and its purpose in this `Biostars` post - - -### Material to further look into -- [`RUVg` (`RUVSeq`) seems to be something useful and worth considering for our work](https://www.google.com/search?q=ruvg+normalization&oq=ruvg+normalization&aqs=chrome..69i57.2410j0j7&sourceid=chrome&ie=UTF-8) -- [Confused about using `RUVg` in getting negative control genes using `RUVg` (`Bioconductor`)](https://support.bioconductor.org/p/9144949/) -
-
- - -## Email chains `#TBO` -- [Using `DESeq2` scaling factors in the generation of `bigwig`s](https://outlook.office.com/mail/id/AAQkAGQ2MWM4OTBhLWZjNTItNGFlZS05OTg3LTA2MTA2NjJkNzU3ZAAQALWZ%2F1g2TixHsmcItlSvLMw%3D) - + Me to Alison - + 2023-0124 -- [`DESeq2` math (is confusing)](https://outlook.office.com/mail/id/AAQkAGQ2MWM4OTBhLWZjNTItNGFlZS05OTg3LTA2MTA2NjJkNzU3ZAAQABU533NW37pKvXRIDCuLO70%3D) - + Between me and Alison - + 2023-0120-0124 -- [Variance](https://outlook.office.com/mail/id/AAQkAGQ2MWM4OTBhLWZjNTItNGFlZS05OTg3LTA2MTA2NjJkNzU3ZAAQAAXbHUPN%2FzZFj8Q5y42kbhE%3D) - + Between me and Alison - + 2022-1115-1117 -- [Code snippet for making a dds from counts matrix, then `rlog`-transforming it, then...](https://outlook.office.com/mail/id/AAQkAGQ2MWM4OTBhLWZjNTItNGFlZS05OTg3LTA2MTA2NjJkNzU3ZAAQAMOGut2ppC9NggrVTSmvfb8%3D) - + Between me and Alison - + 2022-1115 -- [A question and a thought](https://outlook.office.com/mail/id/AAQkAGQ2MWM4OTBhLWZjNTItNGFlZS05OTg3LTA2MTA2NjJkNzU3ZAAQAElsJPNmy%2FBIqpkqHwG4Dg8%3D) - + Between me and Alison - + 2022-1103 -- [More thinking about `estimateSizeFactors` with `controlGenes`](https://outlook.office.com/mail/id/AAQkAGQ2MWM4OTBhLWZjNTItNGFlZS05OTg3LTA2MTA2NjJkNzU3ZAAQABQLBQokcp1Huq5me3WutFU%3D) - + Between me and Alison - + 2022-1103 diff --git a/results/2022-1101/notes-UMIs-etc.md b/results/2022-1101/notes-UMIs-etc.md deleted file mode 100644 index 95c5432..0000000 --- a/results/2022-1101/notes-UMIs-etc.md +++ /dev/null @@ -1,468 +0,0 @@ - -# 2022-11 -
-Table of Contents - - -1. [Looking into UMI-tools](#looking-into-umi-tools) - 1. [Email chains between Alison and Matt Fitzgibbon, FHCC Bioinformatician](#email-chains-between-alison-and-matt-fitzgibbon-fhcc-bioinformatician) - 1. [Chain #1](#chain-1) - 1. [Message #1](#message-1) - 1. [Message #2](#message-2) - 1. [Message #3](#message-3) - 1. [Message #4](#message-4) - 1. [Message #5](#message-5) - 1. [Message #6](#message-6) - 1. [Message #7](#message-7) - 1. [Message #8](#message-8) - 1. [Message #9](#message-9) - 1. [Chain #2](#chain-2) - 1. [Message #1](#message-1-1) - 1. [Message #2](#message-2-1) - 1. [Message #3](#message-3-1) - 1. [Message #4](#message-4-1) - 1. [Message #5](#message-5-1) - 1. [Message #6](#message-6-1) - 1. [Message #7](#message-7-1) - 1. [Message #8](#message-8-1) - 1. [Message #9](#message-9-1) - 1. [Notes, etc. on removing PCR duplicates from *bulk* RNA-seq data](#notes-etc-on-removing-pcr-duplicates-from-bulk-rna-seq-data) - 1. [Should I remove PCR duplicates from my RNA-seq data?](#should-i-remove-pcr-duplicates-from-my-rna-seq-data) - 1. [What are UMIs and why are they used in high-throughput sequencing?](#what-are-umis-and-why-are-they-used-in-high-throughput-sequencing) - 1. [Notes, questions related to the above text](#notes-questions-related-to-the-above-text) - 1. [Notes from reading the Biostars post, "Should We Remove Duplicated Reads In RNA-seq?"](#notes-from-reading-the-biostars-post-should-we-remove-duplicated-reads-in-rna-seq) - 1. [The abstract of Parekh et al., *Sci Rep* 2016](#the-abstract-of-parekh-et-al-sci-rep-2016) - 1. [Notes, questions related to the above text](#notes-questions-related-to-the-above-text-1) - 1. [On "Elimination of PCR duplicates..." \(Fu et al., *BMC Genom* 2018\)](#on-elimination-of-pcr-duplicates-fu-et-al-bmc-genom-2018) - 1. [Abstract](#abstract) - 1. [Final paragraph of Introduction](#final-paragraph-of-introduction) - - -
-
- - -## Looking into UMI-tools -...especially as it pertains to the removal of PCR duplicates - -- Module available on the FHCC cluster: `UMI-tools/1.0.1-foss-2019b-Python-3.7.4` -- Can be installed with conda as well: `install -c bioconda umi_tools` -- [GitHub page for UMI-tools](https://github.com/CGATOxford/UMI-tools) -- [Read the Docs for UMI-tools](https://umi-tools.readthedocs.io/en/latest/index.html) - - -### Email chains between Alison and Matt Fitzgibbon, FHCC Bioinformatician -...regarding sequencing data and their demultiplexing, UMI information, etc. - -#### Chain #1 - -##### Message #1 -From: [SR-Bioinformatics](no-reply@fredhutch.happyfox.com) -Sent: Wednesday, September 28, 2022 3:46 PM -To: [Fitzgibbon, Matthew](mfitzgib@fredhutch.org) -Subject: \[agreenla tsukiyama_t\]: UMI question (#BI00009208) - -**New ticket created #BI00009208** - -Hello! - -I was wondering if UMIs were available for a run of sequencing done this April. The fastq files are in the following folder: -```txt -/shared/ngs/illumina/agreenla/220414_VH00699_101_AAAWYTFM5/Unaligned/Project_agreenla -``` - -I have gotten in the habit of asking genomics to sequence UMIs, but we haven't been using them computationally (though hopefully this will change soon!). I didn't see R3 .fastq files for this experiment, and I was wondering if that wasn't sequenced or if the R3 was somewhere/not normally computationally included. If R3 is no longer available, or never sequenced, that's just what it is, but if this is available and somewhere else you could direct me to, that would be great! - -Thanks! - -Alison Greenlaw - - -##### Message #2 -From: [Matt Fitzgibbon](bioinformatics@fredhutch.org) -Sent: Wednesday, September 28, 2022 4:03 PM -To: [Greenlaw, Alison C](agreenla@fredhutch.org) -Cc: [Fitzgibbon, Matthew P](mfitzgib@fredhutch.org) -Subject: Re: #BI00009208: \[agreenla tsukiyama_t\]: UMI question () - -**New reply for the ticket #BI00009208** - -Hi Alison, - -It looks like that run was configured with read 3 as an index read: - -```txt - - - - -``` - -Looks like these may be a "UDI-UMI" scheme with the i7 read consisting of 8bp index + an 8bp UMI? This would have to be demultiplexed manually. Happy to do that provided we know special handling is needed. In this case I don't have previous notes about this run (beyond seeing that the demultiplex looked successful, with ~6% undetermined barcodes). - -If you can confirm the barcoding & UMI scheme, we'll set up new demux that should generate corresponding R3 files (similar to what we've done previously for Ovation Solo runs). - -Note that in this case, I happen to still have the raw binary dump from the sequencer available, but in general we guarantee retaining the binary data for 30 days. If there are other previous runs where you'd like to leverage the UMIs please let me know flowcell IDs so we can retain them until demultiplexed. - -Thanks, --Matt - - -##### Message #3 -From: [SR-Bioinformatics](no-reply@fredhutch.happyfox.com) -Sent: Wednesday, September 28, 2022 4:14 PM -To: [Fitzgibbon, Matthew](mfitzgib@fredhutch.org) -Subject: New reply: : \[agreenla tsukiyama_t\]: UMI question () #BI00009208 - -**New reply for ticket #BI00009208** - -Thank you so much! That scheme seems to be correct to me! The manual (screenshot attached) says to use 16 cycles to capture the 8 bp tag. I will be sure to be more proactive about requesting this in the future. - -This is a long shot, but there's some sequencing from 2020 that, if the UMI data exists, I would like to have it. The data is in this folder: -`/shared/ngs/illumina/ccucinot/200722_D00300_1007_BHGV5NBCX3/` - -(Christine and I shared a lane and she submitted it. I can see a "raw" folder exists but don't have permission to access it.) This one was done using the Ovation Solo kit that we have since stopped using. - -Thanks so much for all your help! -Alison - - -##### Message #4 -From: [Fitzgibbon, Matthew](mfitzgib@fredhutch.org) -Sent: Wednesday, September 28, 2022 4:21 PM -To: [Greenlaw, Alison C](agreenla@fredhutch.org) -Cc: [Fitzgibbon, Matthew P](mfitzgib@fredhutch.org) -Subject: Re: #BI00009208: New reply: : \[agreenla tsukiyama_t\]: UMI question () - -**New reply for the ticket #BI00009208** - -Ok, that sounds fortunate. I coordinated with Christine on a few UMI runs. She didn't want the UMIs at the time, but we discussed that they would be unrecoverable without the raw binary data, so I saved copies of a few specific runs for her. The `200722_D00300_1007_BHGV5NBCX3` flowcell "raw" directory is likely one of these. - -I'm out of office today, but will get the `220414_VH00699_101_AAAWYTFM5` demux set up tomorrow. - -Cheers, --Matt - - -##### Message #5 -From: [SR-Bioinformatics](no-reply@fredhutch.happyfox.com) -Sent: Wednesday, September 28, 2022 4:27 PM -To: [Fitzgibbon, Matthew P](mfitzgib@fredhutch.org) -Subject: New reply: : New reply: : \[agreenla tsukiyama_t\]: UMI question () #BI00009208 - -**New reply for ticket #BI00009208** - -That's great to hear! Thank you so much! - -Alison - - -##### Message #6 -From: [Fitzgibbon, Matthew P](mfitzgib@fredhutch.org) -Sent: Thursday, September 29, 2022 1:11 AM -To: [Bioinformatics](bioinformatics@fredhutch.org) -Cc: [Greenlaw, Alison C](agreenla@fredhutch.org) -Subject: Re: New reply: : New reply: : \[agreenla tsukiyama_t\]: UMI question () #BI00009208 - -Ok, this should be done for the April flowcell. Since the naming of the files is different, I put it alongside the existing results under: -`/shared/ngs/illumina/agreenla/220414_VH00699_101_AAAWYTFM5/Unaligned_UMI/Project_agreenla` - -Under the new folder, we generated the UMI reads in the \_R2 files so the second read in each pair is now named \_R3 here. That is, the older file: -`Unaligned/Project_agreenla/SAMPLE_BM10_DSp48_5781_S22_R2_001.fastq.gz` - -has the same contents as the new file: -`Unaligned_UMI/Project_agreenla/SAMPLE_BM10_DSp48_5781_S22_R3_001.fastq.gz` - -The file sizes may be different because of compression differences, but the uncompressed sequence should be identical. I also generated the index reads (\_I1 & \_I2) in case needed by downstream software. - -Note that the data here are largely redundant with the original demultiplexing result, so the original could be removed to save storage space. I also noticed that there are a few "archived" copies of a June 2021 flowcell, likely generated by HutchBase while someone was correcting barcodes. We can remove these "archived" folders if no one is using them. - -Let me know how looks, --Matt - - -##### Message #7 -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Sent: Thursday, September 29, 2022 7:08 PM -To: [Fitzgibbon, Matthew P](mfitzgib@fredhutch.org) -Subject: Re: New reply: : New reply: : \[agreenla tsukiyama_t\]: UMI question () #BI00009208 - -Looks great to me! Thank you so much! I have entered barcodes incorrectly when submitting before, so I do suspect that's what those archived copies are. - -When you have a chance, I would still appreciate the UMI info from the 2020 run. I'm currently very much in wet bench mode so it's no rush. - -Thanks! -Alison - - -##### Message #8 -From: [Fitzgibbon, Matthew P](mfitzgib@fredhutch.org) -Sent: Friday, September 30, 2022 11:27 PM -To: [Greenlaw, Alison C](agreenla@fredhutch.org) -Subject: Re: New reply: : New reply: : [agreenla tsukiyama_t]: UMI question () #BI00009208 - -Hi Alison, - -Demultiplexing for that run is done, again alongside the original since the filenames are changed (R1/R2/R3): -`/shared/ngs/illumina/ccucinot/200722_D00300_1007_BHGV5NBCX3/Unaligned_UMI/Project_ccucinot` - -This uses a newer version of the demultiplexing software than was current in 2020, so the organization is a bit different as well. The newer version also excludes the Illumina quality "failed" reads, which are generally not recommended for consideration. - -Is this data related to the quiescent yeast work? I think there are two other older flowcells that may have similar UMI setup: -```txt -180816_D00300_0592_AHKHHNBCX2 -200128_D00300_0897_HCHGFBCX3 -``` -Let me know if either of these flowcells are related to this project as well. Otherwise will close this request out for now. - -Best, --Matt - - -##### Message #9 -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Sent: Friday, September 30, 2022 11:32 PM -To: [Fitzgibbon, Matthew P](mfitzgib@fredhutch.org) -Subject: Re: New reply: : New reply: : \[agreenla tsukiyama_t\]: UMI question () #BI00009208 - -Thank you so much! Are those folders within Christine's directory? If I had to venture a guess, that would be the RNAseq that went into her 2020 elife paper on exit from Q. I'm not looking to do anything with that sequencing for my project for the time being, and I'm not sure what, if any, plans she has for that data. You're definitely good to close this request for now! - -Have a nice weekend! - -Alison - - -#### Chain #2 - -##### Message #1 -From: [SR-Bioinformatics](no-reply@fredhutch.happyfox.com) -Sent: Tuesday, October 11, 2022 12:28 PM -To: [Fitzgibbon, Matthew](mfitzgib@fredhutch.org) -Subject: #BI00009330: \[agreenla tsukiyama_t\]: Transfer Status Failed () - -**New ticket created #BI00009330** - -Hi Bioinformatics - - -I just did some sequencing and the page on hutchbase says "Transfer process appears to have failed, please contact Bioinformatics." Could you help me with this? The run folder is `221010_VH01189_10_AAC57JMM5`. - -Thanks so much, -Alison Greenlaw - - -##### Message #2 -From: [Matt Fitzgibbon](bioinformatics@fredhutch.org) -Sent: Tuesday, October 11, 2022 1:00 PM -To: [Greenlaw, Alison C](agreenla@fredhutch.org) -Subject: Re: #BI00009330: \[agreenla tsukiyama_t\]: Transfer Status Failed () - -**New reply for the ticket #BI00009330** - -Hi Allison, - -The systems group is having trouble with the storage systems. We are aware of this and I know I need to do multiplex manually to get the UM eyes to you. Will update when we know more. - --Matt - - -##### Message #3 -From: [SR-Bioinformatics](no-reply@fredhutch.happyfox.com) -Sent: Tuesday, October 11, 2022 1:17 PM -To: [Fitzgibbon, Matthew](mfitzgib@fredhutch.org) -Subject: New reply: : \[agreenla tsukiyama_t\]: Transfer Status Failed () #BI00009330 - -**New reply for ticket #BI00009330** - -Thank you so much! - -Alison - - -##### Message #4 -From: [Matt Fitzgibbon](bioinformatics@fredhutch.org) -Sent: Tuesday, October 11, 2022 3:38 PM -To: [Bioinformatics](bioinformatics@fredhutch.org) -Subject: Re: New reply: : \[agreenla tsukiyama_t\]: Transfer Status Failed () #BI00009330 - -Hi Alison, - -Demultiplexed output (including the UMIs as _R2) are under: - -`/shared/ngs/illumina/agreenla/221010_VH01189_10_AAC57JMM5/Unaligned/Project_agreenla` - -As with other UMI data, the forward & reverse read pairs are named \_R1 & \_R3 here. Overall, yield looks quite good as summarized in the table below. Let us know if you have additional questions or any trouble accessing the files. - -Cheers, --Matt - -| sample | clusters | pct | -| :---------------------------------- | :---------------------------------- | :---------------------------------- | -| Sample_CT2_6125_pIAA_Q_Nascent | 44,894,530 | 7.90% | -| Sample_CT4_6126_pIAA_Q_Nascent | 42,977,878 | 7.60% | -| Sample_CT6_7714_pIAA_Q_Nascent | 51,384,406 | 9.00% | -| Sample_CT8_7716_pIAA_Q_Nascent | 46,127,940 | 8.10% | -| Sample_CT10_7718_pIAA_Q_Nascent | 46,209,946 | 8.10% | -| Sample_CT2_6125_pIAA_Q_SteadyState | 42,499,841 | 7.50% | -| Sample_CT4_6126_pIAA_Q_SteadyState | 43,252,877 | 7.60% | -| Sample_CT6_7714_pIAA_Q_SteadyState | 39,023,367 | 6.90% | -| Sample_CT8_7716_pIAA_Q_SteadyState | 45,760,877 | 8.00% | -| Sample_CT10_7718_pIAA_Q_SteadyState | 48,422,087 | 8.50% | -| Sample_CU11_5782_Q_Nascent | 46,984,639 | 8.30% | -| Sample_CU12_5782_Q_SteadyState | 44,791,725 | 7.90% | -| Undetermined | 26,509,156 | 4.70% | -| **Total** | **568,839,269** | | -
- -##### Message #5 -From: [Fitzgibbon, Matthew](mfitzgib@fredhutch.org) -Sent: Wednesday, October 12, 2022 11:18 AM -To: [Bioinformatics](bioinformatics@fredhutch.org) -Cc: [Greenlaw, Alison C](agreenla@fredhutch.org) -Subject: Re: New reply: : \[agreenla tsukiyama_t\]: Transfer Status Failed () #BI00009330 - -Hi Alison, - -Were you able to access these data? Let us know if everything is looking as expected. - -Best, --Matt - - -##### Message #6 -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Sent: Wednesday, October 12, 2022 12:46 PM -To: [Fitzgibbon, Matthew](mfitzgib@fredhutch.org) -Subject: Re: New reply: : \[agreenla tsukiyama_t\]: Transfer Status Failed () #BI00009330 - -Hi Matt! - -I was going to reply when everything started working but the server has been slow and my scripts have been buggy so it's taking a minute. I am pretty sure it's all good on the demultiplexing end but I will reach out if there are issues. - -Alison - - -##### Message #7 -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Date: Wednesday, October 26, 2022 at 3:38 PM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: Fw: New reply: : \[agreenla tsukiyama_t\]: Transfer Status Failed () #BI00009330 - -Turns out the UMI information is in a place I don't have permission to access for `WTQ_G1`. I am fixing this, but it is dependent on bioinformatics core so unfortunately, I don't know when I will be able to get it to you. - -Other UMI info in these Locations: -```txt -~/tsukiyamalab/alisong/TRF4_SSRNA_April2022/UMI_information/Project_agreenla - -~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/5782_7714/UMI -~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/6125_7718/UMI -~/tsukiyamalab/alisong/Nab3_Nrd1_Depletion/Sequencing/Project_agreenla/6126_7716/UMI -``` - - -##### Message #8 -From: [Alavattam, Kris](kalavatt@fredhutch.org) -Sent: Wednesday, October 26, 2022 3:41 PM -To: [Greenlaw, Alison C](agreenla@fredhutch.org) -Subject: Re: New reply: : \[agreenla tsukiyama_t\]: Transfer Status Failed () #BI00009330 - -Thanks, sounds good. - - -##### Message #9 -From: [Greenlaw, Alison C](agreenla@fredhutch.org) -Sent: Wednesday, October 26, 2022 6:55 PM -To: [Alavattam, Kris](kalavatt@fredhutch.org) -Subject: Re: New reply: : \[agreenla tsukiyama_t\]: Transfer Status Failed () #BI00009330 - -Got permission and copied to the following directory: - -`~/tsukiyamalab/alisong/WTQvsG1/Unaligned_UMI/Project_ccucinot` - -Let me know if you have any issues. - -Alison - - -### Notes, etc. on removing PCR duplicates from *bulk* RNA-seq data - -#### [Should I remove PCR duplicates from my RNA-seq data?](https://dnatech.genomecenter.ucdavis.edu/faqs/should-i-remove-pcr-duplicates-from-my-rna-seq-data/) -The short and generalized answer to the question “Should I remove PCR duplicates from my RNA-seq data?” is in most cases **NO**. For some scenarios, de-duplification can be helpful, but **only when using UMIs**. Please see the details below. - -The vast majority of RNA-seq data are analyzed *without duplicate removal*. Duplicate removal is not possible for single-read data (without UMIs). De-duplification is more likely to cause harm to the analysis than to provide benefits even for paired-end data ([Parekh et al., 2016](https://www.nature.com/articles/srep25533)). This is because *the use of simple sequence comparisons, or the typical use of alignment coordinates, to identify “duplicated reads” will lead to the removal of valid biological duplicates*. RNA-seq library preparation involves several processing steps (e.g., fragmentation, random priming, A-tailing, ligation); none of these processes is truly random or unbiased. Thus, the occurrence of "duplicated reads" in between millions of reads can be expected even in paired-end read data. Short transcripts and very highly expressed transcripts will show the majority of such “natural” duplicates. Their removal would distort the data. For example, plant RNA-seq data often seem to contain large amounts of duplicated reads. This is in part due to the fact the gene expression in many plant tissues, like leaves, is dominated by a small number of transcripts: much more so than in most animal samples. Another concern is that the fraction of reads identified as "duplicated" is correlated to the number of aligned reads. Thus, one would have to normalize any data set for equal read numbers to avoid introducing additional bias. - -Several studies (among them [Parekh et al., 2016](https://www.nature.com/articles/srep25533); see below) have shown that retaining PCR and Illumina-clustering duplicates does not cause significant artifacts *as long as the library complexity is sufficient*. The library complexity is, in most cases, directly related to the amount of starting material available for the library preparation. Chemical inhibitors present in the sample could also cause low conversion efficiency and thus reduced library complexities. *PCR duplicates are thus mostly a problem for very low input or for extremely deep RNA-sequencing projects. In these cases, UMIs (Unique Molecular Identifiers) should be used to prevent the removal of natural duplicates.* UMIs are, for example, standard in almost all single-cell RNA-seq protocols. - -*The usage of UMIs is recommended primarily for two scenarios: very low input samples and very deep sequencing of RNA-seq libraries* (> 80 million reads per sample). UMIs are also employed for the detection of ultra-low frequency mutations in DNA sequencing (e.g. [Duplex-Seq](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271547/)). For other types of projects, UMIs will have a minor effect in reducing PCR amplification-induced technical noise. Our 3′-Tag-RNA-seq protocol [employs UMIs by default](https://dnatech.genomecenter.ucdavis.edu/tag-seq-gene-expression-profiling/. For other RNA-seq applications, please request UMIs on the submission form. When using UMIs for conventional RNA-seq, genomic DNA-sequencing, or ChIOP-seq, the first eleven bases of both forward and reverse reads will represent UMI and linker sequences. These are then followed by the biological insert sequences. The UMI sequences are usually trimmed off and the information transferred into the read ID header with software utilities like UMI-Tools. - -Please see the [discussion here](https://www.biostars.org/p/55648/) for details and these excellent papers: -- [Parekh et al., 2016](https://www.nature.com/articles/srep25533): The impact of amplification on differential expression analyses by RNA-seq. -- [Fu et al., 2018](https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-018-4933-1): Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers. -- [Kennedy et al., 2015](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271547/): Detecting ultralow-frequency mutations by Duplex Sequencing. - -*This [blog post](molecularecologist.com/2016/08/the-trouble-with-pcr-duplicates) offers a detailed analysis of the effect of increasing read numbers on the frequency of PCR duplicates as well as the occurrence of false-positive duplicate identifications on another type of Illumina sequencing data (RAD-seq). Please note that the library type studied is different from RNA-seq as are the potential effects of PCR duplicates for this type of analysis. In contrast to RNA-seq, PCR duplicates should be removed for most RAD-seq studies.* - - -#### [What are UMIs and why are they used in high-throughput sequencing?](https://dnatech.genomecenter.ucdavis.edu/faqs/what-are-umis-and-why-are-they-used-in-high-throughput-sequencing/) -**UMI** is an acronym for **U**nique **M**olecular **I**dentifier. UMIs are complex indices added to sequencing libraries **before** any PCR amplification steps, enabling the accurate bioinformatic identification of PCR duplicates. UMIs are also known as “Molecular Barcodes” or “Random Barcodes”. The idea seems to have been first implemented in an iCLIP protocol ([König et al., 2010](https://www.nature.com/articles/nsmb.1838)). - -UMIs are valuable tools for both **quantitative** sequencing applications (e.g., RNA-seq, ChIP-Seq) and also for **genomic variant detection**, especially the detection of rare mutations. UMI sequence information, in conjunction with alignment coordinates, enables grouping of sequencing data into **read families** representing individual sample DNA or RNA fragments. Please see the graphic below. - -**The problems UMIs are addressing:** -- **Quantitative analysis:** Many sequencing library preparation protocols enable high-throughput sequencing (HTS) from low amounts of starting material. Their preparation requires PCR amplification of the libraries. While the PCR polymerases and reagents have been improved greatly in recent years, enabling a mostly unbiased amplification of sequencing libraries, *some biases still remain against sequences with extreme GC contents and against long fragments*. When starting from ultra-low input samples, stochastic effects in the first rounds of the PCR add to the problems. These issues can potentially cause erroneous quantitation data. *Removal of PCR duplicates using alignment coordinate information is especially inefficient for low-input situations and also for deep sequencing data.* In the latter case, *alignment coordinate-based de-duplification will remove large numbers of biological duplicate reads from the data, especially for the most abundant transcripts*. *UMIs alleviate the PCR duplicate problem* by adding unique molecular tags to the sequencing library molecules before amplification. Please also see our [FAQ: “Should I remove PCR duplicates from my RNA-seq data?”](https://dnatech.genomecenter.ucdavis.edu/faqs/should-i-remove-pcr-duplicates-from-my-rna-seq-data/) for more information. -- **Rare variant analysis:** Illumina sequencing provides data with low error rates (~0.1 to 0.5%) for most applications. These low error rates nevertheless interfere with the confident identification of low abundance variants. UMI-less data can’t distinguish between these and sequencing errors. UMIs, in combination with deep sequencing yielding multiple reads for each of the sample DNA fragments, solved this problem. The approach was first described as [Duplex Sequencing](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271547/). Hereby, single-strand consensus sequences (SSCSs) and Duplex consensus sequences (DCSs) assembly of the read families increase the accuracy of the sequencing data significantly. Please note that the DNA sample starting amounts and the library yields have to be controlled for this approach to be efficient. Applications include sequencing of heterogeneous tumor samples, cfDNA sequencing including ctDNA sequencing, and deep exome sequencing. - -The usage of **UMIs** is recommended primarily for three scenarios: very low input samples, very deep sequencing of RNA-seq libraries (> 80 million reads per sample), and the detection of ultra-low frequency mutations in DNA sequencing. For many other types of projects, UMIs will yield minor increases in the accuracy of the data. In addition, *UMI analysis is an excellent QC tool for library complexity.* - -**Incorporating UMIs into sequencing libraries:** -- Our **3′-Tag-RNA-seq** protocols employ [UMIs by default](https://dnatech.genomecenter.ucdavis.edu/tag-seq-gene-expression-profiling/). For **Tag-seq**, the first 6 bases of the forward read represent the UMI. These are followed by a common linker with the sequence "TATA", followed by the 12-bp random priming sequence. It is recommended to transfer the UMI sequence information to the read header and to trim the first 22 bases from each read with UMI-TOOLS or custom scripts. -- For **conventional RNA-seq and DNA sequencing applications**, you will specifically have to request UMIs on the submission form. The default library preparations will NOT use UMIs. The UMIs will be located in-line with the insert sequences for conventional RNA-seq, genomic DNA-sequencing, or ChIP-seq. *The first twelve bases of both forward and reverse reads will represent UMIs and associated linker sequences (7 nt UMI sequence followed by a 5 nt spacer "TGACT"; UMIs of forward and reverse read are independent, resulting in a combined UMI length of 14 nt)*. UMIs and spacers are then followed by the biological insert sequences (for paired-end data, a total of 22 bp will be dedicated to the UMIs instead of the inserts). The UMI and spacer sequences are usually trimmed off and the information transferred into the read ID header with software utilities like UMI-Tools or FASTP. - -The figure below displays the (simplified) principles of the UMI data analysis for quantitative and variant detection studies. -![UMI figure](./notebook/UMIs.png) - - -##### Notes, questions related to the above text -- `#TODO ( )` Look into how to use UMIs to detetermine the complexity of RNA-seq libraries - + Can I do this with UMI-tools? -- What are the UMIs in Alison's libraries? - + Are they independent for each reads as described in the second bullet under **Incorporating UMIs into sequencing libraries**? - + Does UMI-tools automatically detect the UMIs when using, say, the `dedup` subcommand? -- The above figure makes things very clear: great figure! - - -#### Notes from reading the Biostars post, ["Should We Remove Duplicated Reads In RNA-seq?"](https://www.biostars.org/p/55648/) -- [Top comment](https://www.biostars.org/p/55648/#55662): The general consensus seems to be to NOT remove duplicates from RNA-seq. Read the Biostar discussions: - + [Duplicated reads in RNA-seq Experiment](https://www.biostars.org/p/14283/) - + [Read duplicates](https://www.biostars.org/p/47229/) - + [Duplicate reads in RNAseq](https://www.biostars.org/p/52966/) - + and [this seqanswers thread](http://seqanswers.com/forums/showthread.php?t=6854) and the other threads it links to. -- [Most interesting comment (sub-comment to the top comment)](https://www.biostars.org/p/55648/#55882): The general consensus I see from those discussions, [rather than "no"](https://www.biostars.org/p/55648/#55662), is "it depends". The first link: Malachi Griffith writes: *"Observing high rates of read duplicates in RNA-seq libraries is common. It may not be an indication of poor library complexity caused by low sample input or over-amplification. It might be caused by such problems but it is often because of very high abundance of a small number of genes."* Second link: Istvan Albert writes: *"My personal opinion is to investigate the duplication rates and remove them if there is indication that these are artificial ones."* Third link: Ketil writes: *"I think the number of duplicates depend on many factors, so it is hard to give any general and useful rules of thumb. Usually, duplicates are correlated with too little sample material, and/or difficulties in the lab."* And the seqanswers thread goes both ways. - - -#### The abstract of [Parekh et al., *Sci Rep* 2016](https://www.nature.com/articles/srep25533) -Currently, quantitative RNA-seq methods are pushed to work with increasingly small starting amounts of RNA that require amplification. However, it is unclear how much noise or bias amplification introduces and how this affects precision and accuracy of RNA quantification. To assess the effects of amplification, reads that originated from the same RNA molecule (PCR-duplicates) need to be identified. *Computationally, read duplicates are defined by their mapping position, which does not distinguish PCR from natural duplicates and hence it is unclear how to treat duplicated reads.* Here, we generate and analyse RNA-seq data sets prepared using three different protocols (Smart-Seq, TruSeq and UMI-seq). *We find that a large fraction of computationally identified read duplicates are not PCR duplicates and can be explained by sampling and fragmentation bias. Consequently, the computational removal of duplicates does *improve neither accuracy nor precision and can actually worsen the power and the False Discovery Rate (FDR) for differential gene expression.* Even when duplicates are experimentally identified by unique molecular identifiers (UMIs), power and FDR are only mildly improved. However, *the pooling of samples as made possible by the early barcoding of the UMI-protocol leads to an appreciable increase in the power to detect differentially expressed genes.* - - -##### Notes, questions related to the above text -- `#DONE` What kind of wet-lab RNA-seq protocol/kit/etc. did Alison use? - + It will be helpful to read over and understand that - + If there are different protocols/kits/etc. for different libraries, need to know that too - + `#DONE` Add in the information sent by Alison in the email "RNA seq kit info," sent 2022-1102 - + See the section ["Information on the RNA-seq kits used by Alison"](#information-on-the-rna-seq-kits-used-by-alison) below - - -#### On ["Elimination of PCR duplicates..." (Fu et al., *BMC Genom* 2018)](https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-018-4933-1) - -##### Abstract -**Background** -RNA-seq and small RNA-seq are powerful, quantitative tools to study gene regulation and function. Common high-throughput sequencing methods rely on polymerase chain reaction (PCR) to expand the starting material, but not every molecule amplifies equally, causing some to be overrepresented. Unique molecular identifiers (UMIs) can be used to distinguish undesirable PCR duplicates derived from a single molecule and identical but biologically meaningful reads from different molecules. - -**Results** -We have incorporated UMIs into RNA-seq and small RNA-seq protocols and developed tools to analyze the resulting data. Our UMIs contain stretches of random nucleotides whose lengths sufficiently capture diverse molecule species in both RNA-seq and small RNA-seq libraries generated from mouse testis. Our approach yields high-quality data while allowing unique tagging of all molecules in high-depth libraries. - -**Conclusions** -Using simulated and real datasets, we demonstrate that our methods increase the reproducibility of RNA-seq and small RNA-seq data. Notably, *we find that the amount of starting material and sequencing depth, but not the number of PCR cycles, determine PCR duplicate frequency*. Finally, we show that *computational removal of PCR duplicates based only on their mapping coordinates introduces substantial bias into data analysis*. - - -##### Final paragraph of Introduction -Here, we describe novel experimental protocols and computational methods to unambiguously identify PCR duplicates in RNA-seq and small RNA-seq data. We show that r*emoving PCR duplicates using UMI information is accurate, whereas removing PCR duplicates without UMIs is overly aggressive,* eliminating many biologically meaningful reads. Finally, we show that *the amount of starting materials and sequencing depth determine the level of PCR duplicates, without additional contribution from the extent of PCR amplification.* diff --git a/results/2022-1101/notes-miscellaneous-links.md b/results/2022-1101/notes-miscellaneous-links.md deleted file mode 100644 index ce07890..0000000 --- a/results/2022-1101/notes-miscellaneous-links.md +++ /dev/null @@ -1,148 +0,0 @@ - -# 2022-11 -
-Table of Contents - - -1. [Links on how to do miscellaneous things](#links-on-how-to-do-miscellaneous-things) - 1. [System](#system) - 1. [Bash](#bash) - 1. [Vi/Vim](#vivim) - 1. [Sublime](#sublime) - 1. [On making Sublime plugins](#on-making-sublime-plugins) - 1. [Markdown](#markdown) - 1. [HTML](#html) - 1. [Slack](#slack) - 1. [Shell scripting](#shell-scripting) - 1. [Yeast genomics](#yeast-genomics) - 1. [Python](#python) - 1. [SLURM](#slurm) - 1. [FHCC Data Science](#fhcc-data-science) - 1. [`Singularity`, `Docker`](#singularity-docker) - 1. [Tmux](#tmux) - 1. [Awk](#awk) - - -
-
- - -## Links on how to do miscellaneous things - -### System -- [How to shut off auto-period with double space](https://stackoverflow.com/questions/42566449/avoid-auto-period-character-after-quick-type-space-in-sublime-text-3) (in particular, see comment #2, which gives a command-line input answer) -- [Check if file exists relative to current script](https://stackoverflow.com/questions/69418076/check-if-file-exist-relative-to-current-script-one-level-up) -- [On listing functions defined in shell](https://stackoverflow.com/questions/4471364/how-do-i-list-the-functions-defined-in-my-shell) - + `declare -F` -- [On using printf](https://linuxize.com/post/bash-printf-command/) - - -### Bash -- [Choosing between $0 and $BASH_SOURCE](https://stackoverflow.com/questions/35006457/choosing-between-0-and-bash-source) -- - - -### Vi/Vim -- [Searching and replacing](https://docs.oracle.com/cd/E19253-01/806-7612/editorvi-62/index.html) -- [Page up/down keystrokes](https://alvinalexander.com/linux-unix/vi-vim-page-up-page-down-keys-keystrokes/) - - -### Sublime -- [Shortcuts to change text case (upper or lower)](https://www.nobledesktop.com/blog/change-text-case-in-sublime-text) - + Convert to upper case: `cmd k` the `cmd u` - + Convert to lower case: `cmd k` the `cmd l` -- [Shortcuts for more complicated case conversions](https://github.com/jdavisclark/CaseConversion) - + dash-case: `ctrl alt c`, `ctrl alt h` - + separate words: `ctrl alt c`, `ctrl alt w` - + [more options](https://github.com/jdavisclark/CaseConversion#keybindings) - + [`stackoverflow.com` post](https://stackoverflow.com/questions/68735093/insert-hyphens-between-each-space-on-sublime-text) -- [Shortcut for split view (duplicate of the same file)](https://stackoverflow.com/questions/69201917/how-to-create-a-keyboard-shortcut-for-split-view-duplicate-of-the-same-file-in) - + Non-shortcut way: `File` > `Split View` -- https://github.com/randy3k/SendCode#sendcode-for-sublime-text -- https://www.reddit.com/r/SublimeText/comments/gwcug3/how_to_run_only_selected_lines_of_code_in_sublime/ -- [How to see installed packages](https://forum.sublimetext.com/t/sublime-text3-how-to-see-installed-packages/21939/2) - + `Package Control: List Packages` -- [How to uninstall packages](https://superuser.com/questions/840527/how-to-uninstall-remove-package-control-from-sublime-text-3) - + `Package Control: Remove Package` -- [How to change the theme](https://www.technipages.com/how-to-change-the-theme-in-sublime-text-3) -- [Getting Sublime kitted out](https://rowannicholls.github.io/sublime_text.html) - - -#### On making Sublime plugins -- [Basic tutorial from Sublime](https://docs.sublimetext.io/guide/extensibility/plugins/) -- [Another tutorial](https://betterprogramming.pub/how-to-create-your-own-sublime-text-plugin-2731e75f52d5) -- [Google search results](https://www.google.com/search?q=how+to+write+a+sublime+plugin&oq=how+to+write+a+sublime+plugin&aqs=chrome..69i57j33i160j33i22i29i30l3.6346j0j7&sourceid=chrome&ie=UTF-8) -- [An example plugin](https://github.com/liangzr/WDMLMarkup/blob/master/encode_html_entities.py) -- [On creating keybindings to plugins](https://forum.sublimetext.com/t/how-to-create-key-binding-to-python-script/4589) - - -### Markdown -- [Sublime MarkdownEditing](MarkdownEditing) -- [Markdown Extended Syntax](https://www.markdownguide.org/extended-syntax) -- [How to add new line in markdown presentation](https://stackoverflow.com/questions/33191744/how-to-add-new-line-in-markdown-presentation) -- [How do I display local image in Markdown?](https://stackoverflow.com/questions/41604263/how-do-i-display-local-image-in-markdown) -- [How to link to headers](https://stackoverflow.com/questions/51221730/markdown-link-to-header) -- [How to reference a section in another file](https://stackoverflow.com/questions/51187658/markdown-reference-to-section-from-another-file) -- [How to highlight text in a Markdown document](https://stackoverflow.com/questions/25104738/text-highlight-in-markdown) -- [Get underlined text with Markdown](https://stackoverflow.com/questions/3003476/get-underlined-text-with-markdown) -- [Set up spellcheck for files with `.md` extension](https://stackoverflow.com/questions/28986782/sublime-text-spell-check-but-only-certain-file-extensions) -- [Quickly generate a TOC](https://stackoverflow.com/questions/11948245/markdown-to-create-pages-and-table-of-contents) -- [Markdown Preview Documentation](https://facelessuser.github.io/MarkdownPreview/usage/) -- [Add a collapsible header to Markdown](https://stackoverflow.com/questions/31562552/collapsible-header-in-markdown-to-html) -- [Changing the sizes of embedded images](https://stackoverflow.com/questions/14675913/changing-image-size-in-markdown) - - -### HTML -- [How to change font size](https://kb.iu.edu/d/abai) - - -### Slack -- [fhbig.slack.com](https://fhbig.slack.com/) - - -### Shell scripting -- [Scripting Tips for Bioinformatics](https://informatics.fas.harvard.edu/scripting-tips-for-bioinformatics.html) -- [Use bash to multiply floats](https://stackoverflow.com/questions/26003503/utilizing-bash-to-multiply-an-interger-by-a-float-with-an-if-statement) - - -### Yeast genomics -- [SGD Wiki](https://wiki.yeastgenome.org/index.php/Main_Page) - - -### Python -- [Set up Sublime to work with Python (including interactive mode)](https://www.youtube.com/watch?v=rIl0mmYSPIc) - - -### SLURM -- [Print the number of CPUs in use per job in SLURM](https://stackoverflow.com/questions/64928381/print-the-number-of-cpus-in-use-per-job-in-slurm) - + The `squeue` command has two parameters that allow choosing the columns displayed in the output, `--format` and `--Format` - * Each has an option (respectively `%c` and `NumCPUs`) to display the number of cores requested by the job - + Try with `squeue -o "%.18i %.9P %.8j %.8u %.2t %.10M %.6D %R %c"` - * This will show the default columns and add the number of cores as the last column - * You can fiddle with the format string to arrange the columns as you want - * Then, when you are happy with the output, you can set it as the value of the `SQUEUE_FORMAT` variable in your `.bash_profile` or `.bashrc` - * e.g., `export SQUEUE_FORMAT='%.18i %.9P %.8j %.8u %.2t %.10M %.6D %R %c'` - + See the `squeue` man page for more details - - -### FHCC Data Science -- [Information on computing environments and containers](https://sciwiki.fredhutch.org/scicomputing/compute_environments/) -- [Leave issues at this repo to install or change packages on the HPC](https://github.com/FredHutch/easybuild-life-sciences) -- [Using Singularity containers](https://sciwiki.fredhutch.org/compdemos/Singularity/) -- [Running workflows on Gizmo](https://sciwiki.fredhutch.org/hdc/workflows/running/on_gizmo/) -- [Background on workflows](https://sciwiki.fredhutch.org/hdc/workflows/workflow_background/) - - -### `Singularity`, `Docker` -- [How to build a `Singularity` container from a `dockerfile`](https://stackoverflow.com/questions/60314664/how-to-build-singularity-container-from-dockerfile) - - -### Tmux -- [How to scroll in tmux](https://superuser.com/questions/209437/how-do-i-scroll-in-tmux) - - -### Awk -- https://stackoverflow.com/questions/2961635/using-awk-to-print-all-columns-from-the-nth-to-the-last -- https://stackoverflow.com/questions/11312359/awk-printing-characters-between-fields -- https://stackoverflow.com/questions/10776679/how-to-split-string-on-forward-slash-in-bash -- diff --git a/results/2022-1101/work-Python-local.key-bindings-system.json b/results/2022-1101/work-Python-local.key-bindings-system.json deleted file mode 100644 index 7e8d9fb..0000000 --- a/results/2022-1101/work-Python-local.key-bindings-system.json +++ /dev/null @@ -1,1662 +0,0 @@ -{ - // Keyboard Shortcuts - // @jupyterlab/shortcuts-extension:shortcuts - // Keyboard shortcut settings. - // ***************************************** - - // - // Note: To disable a system default shortcut, - // copy it to User Preferences and add the - // "disabled" key, for example: - // { - // "command": "application:activate-next-tab", - // "keys": [ - // "Ctrl Shift ]" - // ], - // "selector": "body", - // "disabled": true - // } - // - // List of commands followed by keyboard shortcuts: - // completer:invoke - // completer:select - // tooltip:dismiss - // router:tree - // apputils:activate-command-palette - // apputils:load-statedb - // apputils:reset - // apputils:reset-on-load - // apputils:print - // apputils:run-first-enabled - // apputils:run-all-enabled - // docmanager:clone - // docmanager:rename - // docmanager:delete - // docmanager:show-in-file-browser - // docmanager:delete-file - // docmanager:new-untitled - // docmanager:open - // docmanager:reload - // docmanager:restore-checkpoint - // docmanager:save - // docmanager:save-all - // docmanager:save-as - // docmanager:toggle-autosave - // __internal:context-menu-info - // application:close - // application:close-other-tabs - // application:close-right-tabs - // application:activate-next-tab - // application:activate-previous-tab - // application:activate-next-tab-bar - // application:activate-previous-tab-bar - // application:close-all - // application:toggle-left-area - // application:toggle-right-area - // application:toggle-presentation-mode - // application:set-mode - // application:toggle-mode - // apputils:toggle-header - // launcher:create - // statusbar:toggle - // documentsearch:start - // documentsearch:startWithReplace - // documentsearch:highlightNext - // documentsearch:highlightPrevious - // help:about - // help:launch-classic-notebook - // help:jupyter-forum - // apputils:change-theme - // apputils:theme-scrollbars - // apputils:change-font - // apputils:incr-font-size - // apputils:decr-font-size - // docmanager:download - // docmanager:open-browser-tab - // htmlviewer:trust-html - // imageviewer:zoom-in - // imageviewer:zoom-out - // imageviewer:reset-image - // imageviewer:rotate-clockwise - // imageviewer:rotate-counterclockwise - // imageviewer:flip-horizontal - // imageviewer:flip-vertical - // imageviewer:invert-colors - // rendermime:handle-local-link - // inspector:open - // extensionmanager:toggle - // markdownviewer:open - // markdownviewer:edit - // settingeditor:open-json - // settingeditor:revert - // settingeditor:save - // workspace-ui:save-as - // workspace-ui:save - // filebrowser:share-main - // filebrowser:download - // filebrowser:copy-download-link - // filebrowser:open-browser-tab - // filebrowser:open-url - // settingeditor:open - // filebrowser:delete - // filebrowser:copy - // filebrowser:cut - // filebrowser:duplicate - // filebrowser:go-to-path - // filebrowser:go-up - // filebrowser:open-path - // filebrowser:open - // filebrowser:paste - // filebrowser:create-new-directory - // filebrowser:create-new-file - // filebrowser:create-new-markdown-file - // filebrowser:refresh - // filebrowser:rename - // filebrowser:copy-path - // filebrowser:shutdown - // filebrowser:toggle-main - // filebrowser:create-main-launcher - // filebrowser:toggle-navigate-to-current-directory - // filebrowser:toggle-last-modified - // filebrowser:toggle-hidden-files - // filebrowser:search - // filebrowser:activate - // filebrowser:hide-main - // editmenu:undo - // editmenu:redo - // editmenu:clear-current - // editmenu:clear-all - // editmenu:go-to-line - // filemenu:close-and-cleanup - // filemenu:create-console - // filemenu:shutdown - // filemenu:logout - // kernelmenu:interrupt - // kernelmenu:reconnect-to-kernel - // kernelmenu:restart - // kernelmenu:restart-and-clear - // kernelmenu:change - // kernelmenu:shutdown - // kernelmenu:shutdownAll - // runmenu:run - // runmenu:run-all - // runmenu:restart-and-run-all - // viewmenu:line-numbering - // viewmenu:match-brackets - // viewmenu:word-wrap - // tabsmenu:activate-by-id - // tabsmenu:activate-previously-used-tab - // editmenu:open - // filemenu:open - // kernelmenu:open - // runmenu:open - // viewmenu:open - // settingsmenu:open - // tabsmenu:open - // helpmenu:open - // mainmenu:open-first - // help:open - // notebook:run-cell-and-select-next - // notebook:run-cell - // notebook:run-cell-and-insert-below - // notebook:run-all-cells - // notebook:run-all-above - // notebook:run-all-below - // notebook:render-all-markdown - // notebook:restart-kernel - // notebook:close-and-shutdown - // notebook:trust - // notebook:restart-clear-output - // notebook:restart-and-run-to-selected - // notebook:restart-run-all - // notebook:clear-all-cell-outputs - // notebook:clear-cell-output - // notebook:interrupt-kernel - // notebook:change-cell-to-code - // notebook:change-cell-to-markdown - // notebook:change-cell-to-raw - // notebook:cut-cell - // notebook:copy-cell - // notebook:paste-cell-below - // notebook:paste-cell-above - // notebook:duplicate-below - // notebook:paste-and-replace-cell - // notebook:delete-cell - // notebook:split-cell-at-cursor - // notebook:merge-cells - // notebook:merge-cell-above - // notebook:merge-cell-below - // notebook:insert-cell-above - // notebook:insert-cell-below - // notebook:move-cursor-up - // notebook:move-cursor-down - // notebook:extend-marked-cells-above - // notebook:extend-marked-cells-top - // notebook:extend-marked-cells-below - // notebook:extend-marked-cells-bottom - // notebook:select-all - // notebook:deselect-all - // notebook:move-cell-up - // notebook:move-cell-down - // notebook:toggle-all-cell-line-numbers - // notebook:enter-command-mode - // notebook:enter-edit-mode - // notebook:undo-cell-action - // notebook:redo-cell-action - // notebook:change-kernel - // notebook:reconnect-to-kernel - // notebook:change-cell-to-heading-1 - // notebook:change-cell-to-heading-2 - // notebook:change-cell-to-heading-3 - // notebook:change-cell-to-heading-4 - // notebook:change-cell-to-heading-5 - // notebook:change-cell-to-heading-6 - // notebook:hide-cell-code - // notebook:show-cell-code - // notebook:hide-all-cell-code - // notebook:show-all-cell-code - // notebook:hide-cell-outputs - // notebook:show-cell-outputs - // notebook:hide-all-cell-outputs - // notebook:toggle-render-side-by-side-current - // notebook:show-all-cell-outputs - // notebook:enable-output-scrolling - // notebook:disable-output-scrolling - // notebook:select-last-run-cell - // notebook:replace-selection - // Collapsible_Headings:Toggle_Collapse - // Collapsible_Headings:Collapse_All - // Collapsible_Headings:Expand_All - // notebook:create-new - // help:licenses - // help:licenses-refresh - // help:license-report - // terminal:create-new - // terminal:open - // terminal:refresh - // terminal:increase-font - // terminal:decrease-font - // terminal:set-theme - // notebook:toggle-autoclosing-brackets - // notebook:set-side-by-side-ratio - // completer:invoke-notebook - // completer:select-notebook - // logconsole:open - // logconsole:add-checkpoint - // logconsole:clear - // logconsole:set-level - // notebook:export-to-format - // notebook:create-output-view - // notebook:create-console - // notebook:run-in-console - // notebook:copy-to-clipboard - // tooltip:launch-notebook - // console:toggle-autoclosing-brackets - // console:open - // console:create - // console:clear - // console:run-unforced - // console:run-forced - // console:linebreak - // console:replace-selection - // console:interrupt-kernel - // console:restart-kernel - // console:close-and-shutdown - // console:inject - // console:change-kernel - // console:interaction-mode - // completer:invoke-console - // completer:select-console - // console:toggle-show-all-kernel-activity - // tooltip:launch-console - // fileeditor:change-font-size - // fileeditor:toggle-line-numbers - // fileeditor:toggle-line-wrap - // fileeditor:change-tabs - // fileeditor:toggle-match-brackets - // fileeditor:toggle-autoclosing-brackets - // fileeditor:toggle-autoclosing-brackets-universal - // fileeditor:replace-selection - // fileeditor:create-console - // fileeditor:run-code - // fileeditor:run-all - // fileeditor:markdown-preview - // fileeditor:create-new - // fileeditor:create-new-markdown-file - // fileeditor:undo - // fileeditor:redo - // fileeditor:cut - // fileeditor:copy - // fileeditor:paste - // fileeditor:select-all - // codemirror:change-theme - // codemirror:change-keymap - // codemirror:find - // codemirror:go-to-line - // codemirror:change-mode - // completer:invoke-file - // completer:select-file - // tooltip:launch-file - // toc:run-cells - // debugger:restart-debug - // debugger:inspect-variable - // debugger:render-mime-variable - // debugger:evaluate - // debugger:continue - // debugger:terminate - // debugger:next - // debugger:stepIn - // debugger:stepOut - // debugger:pause - // jupyterlab-translation:en - // sidebar:switch - // - // List of keyboard shortcuts: - "shortcuts": [ - { - "args": {}, - "command": "application:activate-next-tab", - "keys": [ - "Ctrl Shift ]" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "application:activate-next-tab-bar", - "keys": [ - "Ctrl Shift ." - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "application:activate-previous-tab", - "keys": [ - "Ctrl Shift [" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "application:activate-previous-tab-bar", - "keys": [ - "Ctrl Shift ," - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "application:close", - "keys": [ - "Alt W" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Activity" - }, - { - "args": {}, - "command": "application:toggle-left-area", - "keys": [ - "Accel B" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "application:toggle-mode", - "keys": [ - "Accel Shift D" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "application:toggle-presentation-mode", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "application:toggle-right-area", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "apputils:activate-command-palette", - "keys": [ - "Accel Shift C" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "apputils:print", - "keys": [ - "Accel P" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "completer:invoke-console", - "keys": [ - "Tab" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-CodeConsole-promptCell .jp-mod-completer-enabled" - }, - { - "args": {}, - "command": "completer:invoke-file", - "keys": [ - "Tab" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-FileEditor .jp-mod-completer-enabled" - }, - { - "args": {}, - "command": "completer:invoke-notebook", - "keys": [ - "Tab" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook.jp-mod-editMode .jp-mod-completer-enabled" - }, - { - "args": {}, - "command": "console:linebreak", - "keys": [ - "Enter" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-CodeConsole[data-jp-interaction-mode='notebook'] .jp-CodeConsole-promptCell" - }, - { - "args": {}, - "command": "console:linebreak", - "keys": [ - "Accel Enter" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-CodeConsole[data-jp-interaction-mode='terminal'] .jp-CodeConsole-promptCell" - }, - { - "args": {}, - "command": "console:run-forced", - "keys": [ - "Shift Enter" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-CodeConsole[data-jp-interaction-mode='notebook'] .jp-CodeConsole-promptCell" - }, - { - "args": {}, - "command": "console:run-forced", - "keys": [ - "Shift Enter" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-CodeConsole[data-jp-interaction-mode='terminal'] .jp-CodeConsole-promptCell" - }, - { - "args": {}, - "command": "console:run-unforced", - "keys": [ - "Enter" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-CodeConsole[data-jp-interaction-mode='terminal'] .jp-CodeConsole-promptCell" - }, - { - "args": {}, - "command": "debugger:continue", - "keys": [ - "F9" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "debugger:debug-console", - "keys": [ - "Accel Shift I" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-CodeConsole" - }, - { - "args": {}, - "command": "debugger:debug-file", - "keys": [ - "Accel Shift I" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-FileEditor" - }, - { - "args": {}, - "command": "debugger:debug-notebook", - "keys": [ - "Accel Shift I" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook" - }, - { - "args": {}, - "command": "debugger:next", - "keys": [ - "F10" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "debugger:stepIn", - "keys": [ - "F11" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "debugger:stepOut", - "keys": [ - "Shift F11" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "debugger:terminate", - "keys": [ - "Shift F9" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "docmanager:save", - "keys": [ - "Accel S" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "docmanager:save-as", - "keys": [ - "Accel Shift S" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "documentsearch:highlightNext", - "keys": [ - "Accel G" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-mod-searchable" - }, - { - "args": {}, - "command": "documentsearch:highlightPrevious", - "keys": [ - "Accel Shift G" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-mod-searchable" - }, - { - "args": {}, - "command": "documentsearch:start", - "keys": [ - "Accel F" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-mod-searchable" - }, - { - "args": {}, - "command": "editmenu:clear-all", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "[data-jp-undoer]" - }, - { - "args": {}, - "command": "editmenu:clear-current", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "[data-jp-undoer]" - }, - { - "args": {}, - "command": "editmenu:find", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "[data-jp-undoer]" - }, - { - "args": {}, - "command": "editmenu:find-and-replace", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "[data-jp-undoer]" - }, - { - "args": {}, - "command": "editmenu:redo", - "keys": [ - "Accel Shift Z" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "[data-jp-undoer]" - }, - { - "args": {}, - "command": "editmenu:undo", - "keys": [ - "Accel Z" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "[data-jp-undoer]" - }, - { - "args": {}, - "command": "filebrowser:copy", - "keys": [ - "Accel C" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-DirListing-content .jp-DirListing-itemText" - }, - { - "args": {}, - "command": "filebrowser:create-main-launcher", - "keys": [ - "Accel Shift L" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "filebrowser:cut", - "keys": [ - "Accel X" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-DirListing-content .jp-DirListing-itemText" - }, - { - "args": {}, - "command": "filebrowser:delete", - "keys": [ - "Delete" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-DirListing-content .jp-DirListing-itemText" - }, - { - "args": {}, - "command": "filebrowser:duplicate", - "keys": [ - "Accel D" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-DirListing-content .jp-DirListing-itemText" - }, - { - "args": {}, - "command": "filebrowser:go-up", - "keys": [ - "Backspace" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-DirListing-content .jp-DirListing-itemText" - }, - { - "args": {}, - "command": "filebrowser:paste", - "keys": [ - "Accel V" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-DirListing-content .jp-DirListing-itemText" - }, - { - "args": {}, - "command": "filebrowser:rename", - "keys": [ - "F2" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-DirListing-content .jp-DirListing-itemText" - }, - { - "args": {}, - "command": "filebrowser:toggle-main", - "keys": [ - "Accel Shift F" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "filemenu:close-and-cleanup", - "keys": [ - "Ctrl Shift Q" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Activity" - }, - { - "args": {}, - "command": "imageviewer:flip-horizontal", - "keys": [ - "H" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-ImageViewer" - }, - { - "args": {}, - "command": "imageviewer:flip-vertical", - "keys": [ - "V" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-ImageViewer" - }, - { - "args": {}, - "command": "imageviewer:invert-colors", - "keys": [ - "I" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-ImageViewer" - }, - { - "args": {}, - "command": "imageviewer:reset-image", - "keys": [ - "0" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-ImageViewer" - }, - { - "args": {}, - "command": "imageviewer:rotate-clockwise", - "keys": [ - "]" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-ImageViewer" - }, - { - "args": {}, - "command": "imageviewer:rotate-counterclockwise", - "keys": [ - "[" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-ImageViewer" - }, - { - "args": {}, - "command": "imageviewer:zoom-in", - "keys": [ - "=" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-ImageViewer" - }, - { - "args": {}, - "command": "imageviewer:zoom-out", - "keys": [ - "-" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-ImageViewer" - }, - { - "args": {}, - "command": "inspector:open", - "keys": [ - "Accel I" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "kernelmenu:interrupt", - "keys": [ - "I", - "I" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "[data-jp-kernel-user]:focus" - }, - { - "args": {}, - "command": "kernelmenu:restart", - "keys": [ - "0", - "0" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "[data-jp-kernel-user]:focus" - }, - { - "args": {}, - "command": "kernelmenu:restart-and-clear", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "[data-jp-kernel-user]:focus" - }, - { - "args": {}, - "command": "kernelmenu:shutdown", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "[data-jp-kernel-user]:focus" - }, - { - "args": {}, - "command": "launcher:create", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "notebook:change-cell-to-code", - "keys": [ - "Y" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:change-cell-to-heading-1", - "keys": [ - "1" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:change-cell-to-heading-2", - "keys": [ - "2" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:change-cell-to-heading-3", - "keys": [ - "3" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:change-cell-to-heading-4", - "keys": [ - "4" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:change-cell-to-heading-5", - "keys": [ - "5" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:change-cell-to-heading-6", - "keys": [ - "6" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:change-cell-to-markdown", - "keys": [ - "M" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:change-cell-to-raw", - "keys": [ - "R" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:copy-cell", - "keys": [ - "C" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:cut-cell", - "keys": [ - "X" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:delete-cell", - "keys": [ - "D", - "D" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:enter-command-mode", - "keys": [ - "Escape" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook.jp-mod-editMode" - }, - { - "args": {}, - "command": "notebook:enter-command-mode", - "keys": [ - "Ctrl M" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook.jp-mod-editMode" - }, - { - "args": {}, - "command": "notebook:enter-edit-mode", - "keys": [ - "Enter" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:extend-marked-cells-above", - "keys": [ - "Shift ArrowUp" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:extend-marked-cells-above", - "keys": [ - "Shift K" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:extend-marked-cells-below", - "keys": [ - "Shift ArrowDown" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:extend-marked-cells-below", - "keys": [ - "Shift J" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:extend-marked-cells-bottom", - "keys": [ - "Shift End" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:extend-marked-cells-top", - "keys": [ - "Shift Home" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:insert-cell-above", - "keys": [ - "A" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:insert-cell-below", - "keys": [ - "B" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:merge-cell-above", - "keys": [ - "Ctrl Backspace" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:merge-cell-below", - "keys": [ - "Ctrl Shift M" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:merge-cells", - "keys": [ - "Shift M" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:move-cursor-down", - "keys": [ - "ArrowDown" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:move-cursor-down", - "keys": [ - "J" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:move-cursor-up", - "keys": [ - "ArrowUp" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:move-cursor-up", - "keys": [ - "K" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:paste-cell-below", - "keys": [ - "V" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:redo-cell-action", - "keys": [ - "Shift Z" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:run-cell", - "keys": [], - "winKeys": {}, - "macKeys": [ - "Ctrl Enter" - ], - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:run-cell", - "keys": [], - "winKeys": {}, - "macKeys": [ - "Ctrl Enter" - ], - "linuxKeys": {}, - "selector": ".jp-Notebook.jp-mod-editMode" - }, - { - "args": {}, - "command": "notebook:run-cell", - "keys": [ - "Accel Enter" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:run-cell", - "keys": [ - "Accel Enter" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook.jp-mod-editMode" - }, - { - "args": {}, - "command": "notebook:run-cell-and-insert-below", - "keys": [ - "Alt Enter" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:run-cell-and-insert-below", - "keys": [ - "Alt Enter" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook.jp-mod-editMode" - }, - { - "args": {}, - "command": "notebook:run-cell-and-select-next", - "keys": [ - "Shift Enter" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook.jp-mod-editMode" - }, - { - "args": {}, - "command": "notebook:run-in-console", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook.jp-mod-editMode" - }, - { - "args": {}, - "command": "notebook:select-all", - "keys": [ - "Accel A" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:split-cell-at-cursor", - "keys": [ - "Ctrl Shift -" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook.jp-mod-editMode" - }, - { - "args": {}, - "command": "notebook:toggle-all-cell-line-numbers", - "keys": [ - "Shift L" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:toggle-cell-line-numbers", - "keys": [ - "L" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:toggle-render-side-by-side", - "keys": [ - "Ctrl Shift R" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:toggle-render-side-by-side-current", - "keys": [ - "Shift R" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "notebook:undo-cell-action", - "keys": [ - "Z" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook:focus" - }, - { - "args": {}, - "command": "runmenu:restart-and-run-all", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "[data-jp-code-runner]" - }, - { - "args": {}, - "command": "runmenu:run", - "keys": [ - "Shift Enter" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "[data-jp-code-runner]" - }, - { - "args": {}, - "command": "runmenu:run-all", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "[data-jp-code-runner]" - }, - { - "args": {}, - "command": "settingeditor:open", - "keys": [ - "Accel ," - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "settingeditor:save", - "keys": [ - "Accel S" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-SettingEditor" - }, - { - "args": {}, - "command": "tabsmenu:activate-previously-used-tab", - "keys": [ - "Accel Shift '" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body" - }, - { - "args": {}, - "command": "tooltip:dismiss", - "keys": [ - "Escape" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body.jp-mod-tooltip .jp-Notebook" - }, - { - "args": {}, - "command": "tooltip:dismiss", - "keys": [ - "Escape" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": "body.jp-mod-tooltip .jp-CodeConsole-promptCell" - }, - { - "args": {}, - "command": "tooltip:launch-console", - "keys": [ - "Shift Tab" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-CodeConsole-promptCell .jp-InputArea-editor:not(.jp-mod-has-primary-selection):not(.jp-mod-in-leading-whitespace)" - }, - { - "args": {}, - "command": "tooltip:launch-file", - "keys": [ - "Shift Tab" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-FileEditor .jp-CodeMirrorEditor:not(.jp-mod-has-primary-selection):not(.jp-mod-in-leading-whitespace)" - }, - { - "args": {}, - "command": "tooltip:launch-notebook", - "keys": [ - "Shift Tab" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook.jp-mod-editMode .jp-InputArea-editor:not(.jp-mod-has-primary-selection):not(.jp-mod-in-leading-whitespace):not(.jp-mod-completer-active)" - }, - { - "args": {}, - "command": "viewmenu:line-numbering", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook.jp-mod-commandMode" - }, - { - "args": {}, - "command": "viewmenu:match-brackets", - "keys": [ - "" - ], - "winKeys": {}, - "macKeys": {}, - "linuxKeys": {}, - "selector": ".jp-Notebook.jp-mod-commandMode" - } - ] -} \ No newline at end of file diff --git a/results/2022-1101/work-Python-local.key-bindings-user.json b/results/2022-1101/work-Python-local.key-bindings-user.json deleted file mode 100644 index f589884..0000000 --- a/results/2022-1101/work-Python-local.key-bindings-user.json +++ /dev/null @@ -1,63 +0,0 @@ -{ - // Keyboard Shortcuts - // @jupyterlab/shortcuts-extension:shortcuts - // Keyboard shortcut settings. - // ***************************************** - - "shortcuts": [ - { - "args": {}, - "command": "notebook:run-cell", - "keys": [ - "Ctrl Enter" - ], - "selector": ".jp-Notebook:focus", - "disabled": true - }, - { - "args": {}, - "command": "notebook:run-cell", - "keys": [ - "Ctrl Enter" - ], - "selector": ".jp-Notebook.jp-mod-editMode", - "disabled": true - }, - { - "args": {}, - "command": "notebook:run-cell", - "keys": [ - "Accel Enter" - ], - "selector": ".jp-Notebook:focus", - "disabled": true - }, - { - "args": {}, - "command": "notebook:run-cell-and-insert-below", - "keys": [ - "Alt Enter" - ], - "selector": ".jp-Notebook:focus", - "disabled": true - }, - { - "args": {}, - "command": "notebook:run-cell-and-insert-below", - "keys": [ - "Alt Enter" - ], - "selector": ".jp-Notebook.jp-mod-editMode", - "disabled": true - }, - { - "args": {}, - "command": "notebook:run-in-console", - "keys": [ - "Accel Enter" - ], - "selector": ".jp-Notebook.jp-mod-editMode", - "disabled": false - } - ] -} \ No newline at end of file diff --git a/results/2022-1101/work-Python-local.md b/results/2022-1101/work-Python-local.md deleted file mode 100644 index 81ee007..0000000 --- a/results/2022-1101/work-Python-local.md +++ /dev/null @@ -1,932 +0,0 @@ - -
-
-Table of contents - - -1. [Set up local `Trinity_env` `conda`/`mamba` environment](#set-up-local-trinity_env-condamamba-environment) - 1. [Create the environment and install some of the programs](#create-the-environment-and-install-some-of-the-programs) - 1. [Install additional programs, including `jupyterlab`](#install-additional-programs-including-jupyterlab) -1. [Set up `jupyterlab` for use as an IDE](#set-up-jupyterlab-for-use-as-an-ide) - 1. [Update keyboard shortcut bindings](#update-keyboard-shortcut-bindings) - 1. [Install a variable inspector for `jupyterlab`](#install-a-variable-inspector-for-jupyterlab) - 1. [Install a linter for `jupyterlab`](#install-a-linter-for-jupyterlab) - 1. [Opening the console for a notebook](#opening-the-console-for-a-notebook) - 1. [Cool layout for `Jupyter Lab`](#cool-layout-for-jupyter-lab) -1. [Step through portions of `*-filter-uncorrectable-fastq.py*`](#step-through-portions-of--filter-uncorrectable-fastqpy) - - -
-
- - -## Set up local `Trinity_env` `conda`/`mamba` environment - -### Create the environment and install some of the programs -```bash -#!/bin/bash -#DONTRUN - -# Create the environment such that it'll use x86 (and thus Rosetta since I'm -#+ on an Apple M* architecture machine) for its programs -create_x86_conda_environment () { - # Create a conda environment using x86 architecture - #+ - #+ The first argument is environment name; all subsequent arguments will be - #+ passed to `conda create` - #+ - #+ example usage: create_x86_conda_environment myenv_x86 python=3.9 - - CONDA_SUBDIR=osx-64 conda create -n ${@} - conda activate ${1} - conda config --env --set subdir osx-64 -} - -create_x86_conda_environment Trinity_env \ - -c bioconda \ - trim-galore rcorrector star fastqc bedtools -``` - -
-create_x86_conda_environment Trinity_env messages printed to terminal: - -```txt -Collecting package metadata (current_repodata.json): done -Solving environment: done - -## Package Plan ## - - environment location: /Users/kalavatt/mambaforge/envs/Trinity_env - - added / updated specs: - - bedtools - - fastqc - - rcorrector - - star - - trim-galore - - -The following packages will be downloaded: - - package | build - ---------------------------|----------------- - bedtools-2.30.0 | h0e31d98_3 810 KB bioconda - bz2file-0.98 | py_0 9 KB conda-forge - cutadapt-1.18 | py37h1de35cc_1 178 KB bioconda - fastqc-0.11.9 | hdfd78af_1 9.7 MB bioconda - freetype-2.12.1 | h3f81eb7_1 586 KB conda-forge - kmer-jellyfish-2.3.0 | hcd10b59_3 332 KB bioconda - libpng-1.6.39 | ha978bb4_0 265 KB conda-forge - libsqlite-3.40.0 | ha978bb4_0 873 KB conda-forge - openjdk-17.0.3 | hbc0c0cd_4 168.3 MB conda-forge - perl-5.32.1 | 2_h0d85af4_perl5 13.4 MB conda-forge - pigz-2.6 | h5dbffcc_0 88 KB conda-forge - pip-22.3.1 | pyhd8ed1ab_0 1.5 MB conda-forge - python-3.7.12 |hf3644f1_100_cpython 24.3 MB conda-forge - rcorrector-1.0.5 | hb8176d5_0 35 KB bioconda - setuptools-65.5.1 | pyhd8ed1ab_0 731 KB conda-forge - sqlite-3.40.0 | h9ae0607_0 885 KB conda-forge - star-2.7.10b | h527b516_0 2.9 MB bioconda - trim-galore-0.6.7 | hdfd78af_0 42 KB bioconda - wheel-0.38.4 | pyhd8ed1ab_0 32 KB conda-forge - xopen-0.7.3 | py_0 11 KB bioconda - ------------------------------------------------------------ - Total: 224.8 MB - -The following NEW packages will be INSTALLED: - - bedtools bioconda/osx-64::bedtools-2.30.0-h0e31d98_3 None - bz2file conda-forge/noarch::bz2file-0.98-py_0 None - bzip2 conda-forge/osx-64::bzip2-1.0.8-h0d85af4_4 None - ca-certificates conda-forge/osx-64::ca-certificates-2022.9.24-h033912b_0 None - cutadapt bioconda/osx-64::cutadapt-1.18-py37h1de35cc_1 None - expat conda-forge/osx-64::expat-2.5.0-hf0c8a7f_0 None - fastqc bioconda/noarch::fastqc-0.11.9-hdfd78af_1 None - font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0 None - fontconfig conda-forge/osx-64::fontconfig-2.14.1-h5bb23bf_0 None - freetype conda-forge/osx-64::freetype-2.12.1-h3f81eb7_1 None - kmer-jellyfish bioconda/osx-64::kmer-jellyfish-2.3.0-hcd10b59_3 None - libcxx conda-forge/osx-64::libcxx-14.0.6-hccf4f1f_0 None - libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5 None - libpng conda-forge/osx-64::libpng-1.6.39-ha978bb4_0 None - libsqlite conda-forge/osx-64::libsqlite-3.40.0-ha978bb4_0 None - libzlib conda-forge/osx-64::libzlib-1.2.13-hfd90126_4 None - ncurses conda-forge/osx-64::ncurses-6.3-h96cf925_1 None - openjdk conda-forge/osx-64::openjdk-17.0.3-hbc0c0cd_4 None - openssl conda-forge/osx-64::openssl-3.0.7-hfd90126_0 None - perl conda-forge/osx-64::perl-5.32.1-2_h0d85af4_perl5 None - pigz conda-forge/osx-64::pigz-2.6-h5dbffcc_0 None - pip conda-forge/noarch::pip-22.3.1-pyhd8ed1ab_0 None - python conda-forge/osx-64::python-3.7.12-hf3644f1_100_cpython None - rcorrector bioconda/osx-64::rcorrector-1.0.5-hb8176d5_0 None - readline conda-forge/osx-64::readline-8.1.2-h3899abd_0 None - setuptools conda-forge/noarch::setuptools-65.5.1-pyhd8ed1ab_0 None - sqlite conda-forge/osx-64::sqlite-3.40.0-h9ae0607_0 None - star bioconda/osx-64::star-2.7.10b-h527b516_0 None - tk conda-forge/osx-64::tk-8.6.12-h5dbffcc_0 None - trim-galore bioconda/noarch::trim-galore-0.6.7-hdfd78af_0 None - wheel conda-forge/noarch::wheel-0.38.4-pyhd8ed1ab_0 None - xopen bioconda/noarch::xopen-0.7.3-py_0 None - xz conda-forge/osx-64::xz-5.2.6-h775f41a_0 None - zlib conda-forge/osx-64::zlib-1.2.13-hfd90126_4 None - - -Proceed ([y]/n)? Y - - -Downloading and Extracting Packages -perl-5.32.1 | 13.4 MB | ##################################################################################################################### | 100% -rcorrector-1.0.5 | 35 KB | ##################################################################################################################### | 100% -xopen-0.7.3 | 11 KB | ##################################################################################################################### | 100% -bedtools-2.30.0 | 810 KB | ##################################################################################################################### | 100% -fastqc-0.11.9 | 9.7 MB | ##################################################################################################################### | 100% -star-2.7.10b | 2.9 MB | ##################################################################################################################### | 100% -freetype-2.12.1 | 586 KB | ##################################################################################################################### | 100% -pip-22.3.1 | 1.5 MB | ##################################################################################################################### | 100% -python-3.7.12 | 24.3 MB | ##################################################################################################################### | 100% -openjdk-17.0.3 | 168.3 MB | ##################################################################################################################### | 100% -cutadapt-1.18 | 178 KB | ##################################################################################################################### | 100% -trim-galore-0.6.7 | 42 KB | ##################################################################################################################### | 100% -setuptools-65.5.1 | 731 KB | ##################################################################################################################### | 100% -libsqlite-3.40.0 | 873 KB | ##################################################################################################################### | 100% -libpng-1.6.39 | 265 KB | ##################################################################################################################### | 100% -kmer-jellyfish-2.3.0 | 332 KB | ##################################################################################################################### | 100% -wheel-0.38.4 | 32 KB | ##################################################################################################################### | 100% -pigz-2.6 | 88 KB | ##################################################################################################################### | 100% -bz2file-0.98 | 9 KB | ##################################################################################################################### | 100% -sqlite-3.40.0 | 885 KB | ##################################################################################################################### | 100% -Preparing transaction: done -Verifying transaction: done -Executing transaction: done -# -# To activate this environment, use -# -# $ conda activate Trinity_env -# -# To deactivate an active environment, use -# -# $ conda deactivate - -Retrieving notices: ...working... done -``` -
- - -### Install additional programs, including `jupyterlab` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Create an environment alias, save it, and then activate the environment -echo 'alias Trinity_env="conda activate Trinity_env"' >> ~/.zaliases -alias Trinity_env="conda activate Trinity_env" -Trinity_env - -# Install more programs -mamba install -c bioconda rename samtools - -# After the above, install parallel and jupyterlab from conda-forge -mamba install -c conda-forge parallel jupyterlab -``` - -
-mamba install -c bioconda rename samtools messages printed to terminal: - -```txt - - __ __ __ __ - / \ / \ / \ / \ - / \/ \/ \/ \ -███████████████/ /██/ /██/ /██/ /████████████████████████ - / / \ / \ / \ / \ \____ - / / \_/ \_/ \_/ \ o \__, - / _/ \_____/ ` - |/ - ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ - ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ - ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ - ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ - ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ - ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝ - - mamba (0.27.0) supported by @QuantStack - - GitHub: https://github.com/mamba-org/mamba - Twitter: https://twitter.com/QuantStack - -█████████████████████████████████████████████████████████████ - - -Looking for: ['rename', 'samtools'] - -bioconda/noarch Using cache -conda-forge/noarch Using cache -bioconda/osx-64 3.7MB @ 3.2MB/s 1.3s -conda-forge/osx-64 25.5MB @ 4.0MB/s 7.0s - -Pinned packages: - - python 3.7.* - - -Transaction - - Prefix: /Users/kalavatt/mambaforge/envs/Trinity_env - - Updating specs: - - - rename - - samtools - - ca-certificates - - openssl - - - Package Version Build Channel Size -───────────────────────────────────────────────────────────────────────── - Install: -───────────────────────────────────────────────────────────────────────── - - + c-ares 1.18.1 h0d85af4_0 conda-forge/osx-64 Cached - + htslib 1.16 h567f53e_0 bioconda/osx-64 Cached - + krb5 1.19.3 hb98e516_0 conda-forge/osx-64 Cached - + libcurl 7.86.0 h581aaea_1 conda-forge/osx-64 351kB - + libdeflate 1.13 h775f41a_0 conda-forge/osx-64 Cached - + libedit 3.1.20191231 h0678c8f_2 conda-forge/osx-64 Cached - + libev 4.33 haf1e3a3_1 conda-forge/osx-64 Cached - + libnghttp2 1.47.0 h5aae05b_1 conda-forge/osx-64 Cached - + libssh2 1.10.0 h47af595_3 conda-forge/osx-64 Cached - + rename 1.601 hdfd78af_1 bioconda/noarch 13kB - + samtools 1.16.1 h7e39424_1 bioconda/osx-64 Cached - - Summary: - - Install: 11 packages - - Total download: 365kB - -───────────────────────────────────────────────────────────────────────── - -Confirm changes: [Y/n] Y -libcurl 351.2kB @ 2.1MB/s 0.2s -rename 13.4kB @ 52.9kB/s 0.3s -Preparing transaction: done -Verifying transaction: done -Executing transaction: done -``` -
- -
-mamba install -c conda-forge parallel jupyterlab messages printed to terminal: - -```txt - - __ __ __ __ - / \ / \ / \ / \ - / \/ \/ \/ \ -███████████████/ /██/ /██/ /██/ /████████████████████████ - / / \ / \ / \ / \ \____ - / / \_/ \_/ \_/ \ o \__, - / _/ \_____/ ` - |/ - ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ - ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ - ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ - ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ - ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ - ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝ - - mamba (0.27.0) supported by @QuantStack - - GitHub: https://github.com/mamba-org/mamba - Twitter: https://twitter.com/QuantStack - -█████████████████████████████████████████████████████████████ - - -Looking for: ['parallel', 'jupyterlab'] - -conda-forge/osx-64 Using cache -conda-forge/noarch Using cache - -Pinned packages: - - python 3.7.* - - -Transaction - - Prefix: /Users/kalavatt/mambaforge/envs/Trinity_env - - Updating specs: - - - parallel - - jupyterlab - - ca-certificates - - openssl - - - Package Version Build Channel Size -────────────────────────────────────────────────────────────────────────────────────────────────── - Install: -────────────────────────────────────────────────────────────────────────────────────────────────── - - + anyio 3.6.2 pyhd8ed1ab_0 conda-forge/noarch 85kB - + appnope 0.1.3 pyhd8ed1ab_0 conda-forge/noarch 8kB - + argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge/noarch 16kB - + argon2-cffi-bindings 21.2.0 py37h69ee0a8_2 conda-forge/osx-64 35kB - + attrs 22.1.0 pyh71513ae_1 conda-forge/noarch 49kB - + babel 2.11.0 pyhd8ed1ab_0 conda-forge/noarch 7MB - + backcall 0.2.0 pyh9f0ad1d_0 conda-forge/noarch 14kB - + backports 1.0 pyhd8ed1ab_3 conda-forge/noarch 6kB - + backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge/noarch 9kB - + beautifulsoup4 4.11.1 pyha770c72_0 conda-forge/noarch 98kB - + bleach 5.0.1 pyhd8ed1ab_0 conda-forge/noarch 127kB - + brotlipy 0.7.0 py37h69ee0a8_1004 conda-forge/osx-64 375kB - + certifi 2022.9.24 pyhd8ed1ab_0 conda-forge/noarch Cached - + cffi 1.15.1 py37h7346b73_1 conda-forge/osx-64 224kB - + charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge/noarch Cached - + cryptography 38.0.2 py37hbf3704f_1 conda-forge/osx-64 1MB - + debugpy 1.6.3 py37hf6dfe07_0 conda-forge/osx-64 2MB - + decorator 5.1.1 pyhd8ed1ab_0 conda-forge/noarch 12kB - + defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge/noarch 24kB - + entrypoints 0.4 pyhd8ed1ab_0 conda-forge/noarch 9kB - + flit-core 3.8.0 pyhd8ed1ab_0 conda-forge/noarch 46kB - + idna 3.4 pyhd8ed1ab_0 conda-forge/noarch Cached - + importlib-metadata 4.11.4 py37hf985489_0 conda-forge/osx-64 34kB - + importlib_resources 5.10.0 pyhd8ed1ab_0 conda-forge/noarch 30kB - + ipykernel 6.16.2 pyh736e0ef_0 conda-forge/noarch 102kB - + ipython 7.33.0 py37hf985489_0 conda-forge/osx-64 1MB - + ipython_genutils 0.2.0 py_1 conda-forge/noarch 22kB - + jedi 0.18.2 pyhd8ed1ab_0 conda-forge/noarch 804kB - + jinja2 3.1.2 pyhd8ed1ab_1 conda-forge/noarch 101kB - + json5 0.9.5 pyh9f0ad1d_0 conda-forge/noarch 21kB - + jsonschema 4.17.1 pyhd8ed1ab_0 conda-forge/noarch 71kB - + jupyter_client 7.4.7 pyhd8ed1ab_0 conda-forge/noarch 94kB - + jupyter_core 4.11.1 py37hf985489_0 conda-forge/osx-64 83kB - + jupyter_server 1.23.3 pyhd8ed1ab_0 conda-forge/noarch 239kB - + jupyterlab 3.5.0 pyhd8ed1ab_0 conda-forge/noarch 6MB - + jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge/noarch 17kB - + jupyterlab_server 2.16.3 pyhd8ed1ab_0 conda-forge/noarch 51kB - + libsodium 1.0.18 hbcb3906_1 conda-forge/osx-64 529kB - + markupsafe 2.1.1 py37h69ee0a8_1 conda-forge/osx-64 21kB - + matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge/noarch 12kB - + mistune 2.0.4 pyhd8ed1ab_0 conda-forge/noarch 69kB - + nbclassic 0.4.8 pyhd8ed1ab_0 conda-forge/noarch 8MB - + nbclient 0.7.0 pyhd8ed1ab_0 conda-forge/noarch 67kB - + nbconvert 7.2.5 pyhd8ed1ab_0 conda-forge/noarch 6kB - + nbconvert-core 7.2.5 pyhd8ed1ab_0 conda-forge/noarch 197kB - + nbconvert-pandoc 7.2.5 pyhd8ed1ab_0 conda-forge/noarch 5kB - + nbformat 5.7.0 pyhd8ed1ab_0 conda-forge/noarch 109kB - + nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge/noarch 10kB - + notebook 6.5.2 pyha770c72_1 conda-forge/noarch 273kB - + notebook-shim 0.2.2 pyhd8ed1ab_0 conda-forge/noarch 15kB - + packaging 21.3 pyhd8ed1ab_0 conda-forge/noarch 36kB - + pandoc 2.19.2 h694c41f_1 conda-forge/osx-64 Cached - + pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge/noarch 12kB - + parallel 20221122 h694c41f_0 conda-forge/osx-64 2MB - + parso 0.8.3 pyhd8ed1ab_0 conda-forge/noarch 71kB - + pexpect 4.8.0 pyh1a96a4e_2 conda-forge/noarch 49kB - + pickleshare 0.7.5 py_1003 conda-forge/noarch 9kB - + pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge/noarch 9kB - + prometheus_client 0.15.0 pyhd8ed1ab_0 conda-forge/noarch 51kB - + prompt-toolkit 3.0.33 pyha770c72_0 conda-forge/noarch 266kB - + psutil 5.9.3 py37h8052db5_0 conda-forge/osx-64 363kB - + ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge/noarch 17kB - + pycparser 2.21 pyhd8ed1ab_0 conda-forge/noarch Cached - + pygments 2.13.0 pyhd8ed1ab_0 conda-forge/noarch 840kB - + pyopenssl 22.1.0 pyhd8ed1ab_0 conda-forge/noarch Cached - + pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge/noarch 81kB - + pyrsistent 0.18.1 py37h69ee0a8_1 conda-forge/osx-64 90kB - + pysocks 1.7.1 py37hf985489_5 conda-forge/osx-64 28kB - + python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge/noarch 246kB - + python-fastjsonschema 2.16.2 pyhd8ed1ab_0 conda-forge/noarch 247kB - + python_abi 3.7 3_cp37m conda-forge/osx-64 6kB - + pytz 2022.6 pyhd8ed1ab_0 conda-forge/noarch 240kB - + pyzmq 24.0.1 py37haa7bc41_0 conda-forge/osx-64 458kB - + requests 2.28.1 pyhd8ed1ab_1 conda-forge/noarch Cached - + send2trash 1.8.0 pyhd8ed1ab_0 conda-forge/noarch 18kB - + six 1.16.0 pyh6c4a22f_0 conda-forge/noarch 14kB - + sniffio 1.3.0 pyhd8ed1ab_0 conda-forge/noarch 14kB - + soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge/noarch 35kB - + terminado 0.17.0 pyhd1c38e8_0 conda-forge/noarch 19kB - + tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge/noarch 23kB - + tomli 2.0.1 pyhd8ed1ab_0 conda-forge/noarch 16kB - + tornado 6.2 py37h994c40b_0 conda-forge/osx-64 663kB - + traitlets 5.5.0 pyhd8ed1ab_0 conda-forge/noarch 87kB - + typing_extensions 4.4.0 pyha770c72_0 conda-forge/noarch 30kB - + urllib3 1.26.13 pyhd8ed1ab_0 conda-forge/noarch 111kB - + wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge/noarch 34kB - + webencodings 0.5.1 py_1 conda-forge/noarch 12kB - + websocket-client 1.4.2 pyhd8ed1ab_0 conda-forge/noarch 44kB - + zeromq 4.3.4 he49afe7_1 conda-forge/osx-64 321kB - + zipp 3.11.0 pyhd8ed1ab_0 conda-forge/noarch 16kB - - Summary: - - Install: 90 packages - - Total download: 36MB - -────────────────────────────────────────────────────────────────────────────────────────────────── - -Confirm changes: [Y/n] Y -python_abi 5.8kB @ 73.3kB/s 0.1s -pysocks 28.4kB @ 338.1kB/s 0.1s -pyrsistent 90.4kB @ 983.4kB/s 0.1s -tomli 15.9kB @ 142.6kB/s 0.0s -decorator 12.1kB @ 98.0kB/s 0.0s -libsodium 528.8kB @ 4.2MB/s 0.1s -pyzmq 458.2kB @ 3.4MB/s 0.1s -backcall 13.7kB @ 97.0kB/s 0.0s -parso 71.0kB @ 457.5kB/s 0.0s -pyparsing 81.3kB @ 495.9kB/s 0.0s -python-fastjsonschema 247.5kB @ 1.4MB/s 0.0s -entrypoints 9.2kB @ 51.8kB/s 0.0s -json5 20.9kB @ 111.3kB/s 0.0s -pytz 240.2kB @ 1.2MB/s 0.0s -jinja2 101.4kB @ 487.0kB/s 0.0s -typing_extensions 30.0kB @ 136.3kB/s 0.0s -python-dateutil 246.0kB @ 1.1MB/s 0.0s -jedi 804.4kB @ 3.5MB/s 0.0s -beautifulsoup4 98.3kB @ 411.9kB/s 0.0s -wcwidth 34.1kB @ 134.3kB/s 0.0s -anyio 85.2kB @ 329.9kB/s 0.0s -importlib-metadata 33.6kB @ 126.9kB/s 0.0s -brotlipy 375.3kB @ 1.4MB/s 0.0s -jupyter_client 94.1kB @ 338.1kB/s 0.0s -ipykernel 102.2kB @ 349.0kB/s 0.0s -nbclient 66.6kB @ 225.3kB/s 0.0s -jupyter_server 238.5kB @ 799.9kB/s 0.0s -jupyterlab_server 51.1kB @ 170.8kB/s 0.0s -ipython_genutils 21.6kB @ 67.4kB/s 0.0s -appnope 8.1kB @ 24.8kB/s 0.0s -markupsafe 21.3kB @ 64.7kB/s 0.0s -prometheus_client 51.0kB @ 147.8kB/s 0.0s -six 14.3kB @ 40.1kB/s 0.0s -mistune 69.0kB @ 187.7kB/s 0.0s -webencodings 11.9kB @ 32.2kB/s 0.0s -attrs 49.5kB @ 127.2kB/s 0.0s -flit-core 46.3kB @ 118.7kB/s 0.0s -pexpect 48.8kB @ 119.7kB/s 0.0s -tinycss2 23.2kB @ 56.1kB/s 0.0s -jupyterlab 6.3MB @ 14.3MB/s 0.1s -importlib_resources 29.5kB @ 65.9kB/s 0.1s -jupyter_core 83.2kB @ 183.2kB/s 0.0s -cryptography 1.2MB @ 2.6MB/s 0.1s -argon2-cffi 15.7kB @ 32.8kB/s 0.0s -nbconvert-core 197.3kB @ 411.5kB/s 0.0s -notebook-shim 14.9kB @ 30.8kB/s 0.0s -psutil 363.0kB @ 719.8kB/s 0.0s -pickleshare 9.3kB @ 18.5kB/s 0.0s -ptyprocess 16.5kB @ 32.1kB/s 0.0s -backports 6.0kB @ 11.0kB/s 0.0s -defusedxml 24.1kB @ 42.5kB/s 0.1s -matplotlib-inline 12.3kB @ 21.5kB/s 0.1s -zeromq 320.8kB @ 546.0kB/s 0.1s -bleach 127.1kB @ 211.7kB/s 0.0s -nbformat 108.8kB @ 175.1kB/s 0.0s -packaging 36.4kB @ 58.1kB/s 0.1s -nbconvert 6.4kB @ 10.1kB/s 0.0s -nest-asyncio 9.7kB @ 14.7kB/s 0.0s -traitlets 87.4kB @ 131.7kB/s 0.0s -ipython 1.2MB @ 1.7MB/s 0.1s -debugpy 2.0MB @ 2.9MB/s 0.1s -soupsieve 34.7kB @ 50.2kB/s 0.0s -zipp 15.7kB @ 22.6kB/s 0.0s -parallel 1.8MB @ 2.5MB/s 0.7s -nbconvert-pandoc 5.4kB @ 7.4kB/s 0.0s -tornado 663.2kB @ 904.1kB/s 0.0s -websocket-client 43.7kB @ 58.4kB/s 0.0s -sniffio 14.4kB @ 19.1kB/s 0.0s -backports.functools_lru_cache 9.0kB @ 11.9kB/s 0.0s -pkgutil-resolve-name 8.7kB @ 11.1kB/s 0.0s -notebook 272.9kB @ 348.6kB/s 0.0s -jsonschema 70.5kB @ 89.5kB/s 0.0s -argon2-cffi-bindings 35.1kB @ 44.5kB/s 0.1s -terminado 19.1kB @ 23.6kB/s 0.0s -prompt-toolkit 265.7kB @ 323.8kB/s 0.0s -urllib3 110.7kB @ 133.7kB/s 0.0s -pygments 840.4kB @ 1.0MB/s 0.0s -send2trash 17.5kB @ 20.8kB/s 0.0s -babel 7.0MB @ 8.2MB/s 0.2s -cffi 224.0kB @ 257.9kB/s 0.0s -jupyterlab_pygments 17.4kB @ 20.0kB/s 0.0s -pandocfilters 11.6kB @ 13.2kB/s 0.0s -nbclassic 8.0MB @ 8.2MB/s 0.1s -Preparing transaction: done -Verifying transaction: done -Executing transaction: done -``` -
-
-
- - -## Set up `jupyterlab` for use as an IDE -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Run Jupyter Lab -jupyter lab -``` - -### Update keyboard shortcut bindings -1. Settings `>` Advanced Settings Editor `>` JSON Settings Editor -2. Change the following such that `command enter` runs highlighted code, not what's shown below -drawing - -3. Disable use of shortcut `command enter` with `"command": "notebook:run-cell"` - - this command can still be executed with shortcut `control enter` - - the material at this [link](https://stackoverflow.com/questions/70435519/jupyter-lab-delete-all-default-shortcuts) explains how to disable default shortcuts -4. Actually, go ahead and disable the use of `control enter` for `"command": "notebook:run-cell"` too -5. Following the advice at this [link](https://stackoverflow.com/questions/56460834/how-to-run-a-single-line-or-selected-code-in-a-jupyter-notebook-or-jupyterlab-ce), insert a new command into the `JSON` file (line `746`) for running highlighted code: `"notebook:run-in-console"` - -
- Custom keyboard settings - -```json -{ - // Keyboard Shortcuts - // @jupyterlab/shortcuts-extension:shortcuts - // Keyboard shortcut settings. - // ***************************************** - - "shortcuts": [ - { - "args": {}, - "command": "notebook:run-cell", - "keys": [ - "Ctrl Enter" - ], - "selector": ".jp-Notebook:focus", - "disabled": true - }, - { - "args": {}, - "command": "notebook:run-cell", - "keys": [ - "Ctrl Enter" - ], - "selector": ".jp-Notebook.jp-mod-editMode", - "disabled": true - }, - { - "args": {}, - "command": "notebook:run-cell", - "keys": [ - "Accel Enter" - ], - "selector": ".jp-Notebook:focus", - "disabled": true - }, - { - "args": {}, - "command": "notebook:run-cell-and-insert-below", - "keys": [ - "Alt Enter" - ], - "selector": ".jp-Notebook:focus", - "disabled": true - }, - { - "args": {}, - "command": "notebook:run-cell-and-insert-below", - "keys": [ - "Alt Enter" - ], - "selector": ".jp-Notebook.jp-mod-editMode", - "disabled": true - }, - { - "args": {}, - "command": "notebook:run-in-console", - "keys": [ - "Accel Enter" - ], - "selector": ".jp-Notebook.jp-mod-editMode", - "disabled": false - } - ] -} -``` -
- -6. `#TODO` Later, determine appropriate keyboard shortcuts for `"notebook:run-cell-and-insert-below"` and `"notebook:run-cell"` -7. For the above (and more), saved the default key bindings and custom key bindings in separate `.json` files (to be included in the `results/2022-1101/` directory) - -
-jupyter lab messages printed to terminal: - -```txt -[I 2022-11-29 07:42:24.174 ServerApp] jupyterlab | extension was successfully linked. -[I 2022-11-29 07:42:24.182 ServerApp] nbclassic | extension was successfully linked. -[I 2022-11-29 07:42:24.184 ServerApp] Writing Jupyter server cookie secret to /Users/kalavatt/Library/Jupyter/runtime/jupyter_cookie_secret -[I 2022-11-29 07:42:24.493 ServerApp] notebook_shim | extension was successfully linked. -[I 2022-11-29 07:42:24.877 ServerApp] notebook_shim | extension was successfully loaded. -[I 2022-11-29 07:42:24.879 LabApp] JupyterLab extension loaded from /Users/kalavatt/mambaforge/envs/Trinity_env/lib/python3.7/site-packages/jupyterlab -[I 2022-11-29 07:42:24.879 LabApp] JupyterLab application directory is /Users/kalavatt/mambaforge/envs/Trinity_env/share/jupyter/lab -[I 2022-11-29 07:42:24.883 ServerApp] jupyterlab | extension was successfully loaded. -[I 2022-11-29 07:42:24.887 ServerApp] nbclassic | extension was successfully loaded. -[I 2022-11-29 07:42:24.890 ServerApp] Serving notebooks from local directory: /Users/kalavatt/projects-etc/2022_transcriptome-construction -[I 2022-11-29 07:42:24.890 ServerApp] Jupyter Server 1.23.3 is running at: -[I 2022-11-29 07:42:24.890 ServerApp] http://localhost:8888/lab?token=3e03d1ffc651655e8fb98316ad7ea4127550fd731bdc8ccc -[I 2022-11-29 07:42:24.890 ServerApp] or http://127.0.0.1:8888/lab?token=3e03d1ffc651655e8fb98316ad7ea4127550fd731bdc8ccc -[I 2022-11-29 07:42:24.890 ServerApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation). -[C 2022-11-29 07:42:24.897 ServerApp] - - To access the server, open this file in a browser: - file:///Users/kalavatt/Library/Jupyter/runtime/jpserver-26776-open.html - Or copy and paste one of these URLs: - http://localhost:8888/lab?token=3e03d1ffc651655e8fb98316ad7ea4127550fd731bdc8ccc - or http://127.0.0.1:8888/lab?token=3e03d1ffc651655e8fb98316ad7ea4127550fd731bdc8ccc -[W 2022-11-29 07:42:28.071 LabApp] Could not determine jupyterlab build status without nodejs -[I 2022-11-29 07:49:31.589 ServerApp] Creating new notebook in /results/2022-1101 -[I 2022-11-29 07:49:31.649 ServerApp] Writing notebook-signing key to /Users/kalavatt/Library/Jupyter/notebook_secret -[I 2022-11-29 07:49:31.871 ServerApp] Kernel started: 68897743-b29a-4ff6-8187-8c41d33d8f5f -[I 2022-11-29 07:51:31.770 ServerApp] Saving file at /results/2022-1101/Untitled.ipynb -[I 2022-11-29 08:33:39.291 ServerApp] Saving file at /results/2022-1101/Untitled.ipynb -[I 2022-11-29 09:00:48.047 ServerApp] Creating new notebook in /results/2022-1101 -[I 2022-11-29 09:00:48.217 ServerApp] Kernel started: 2910ab38-eb5a-47ef-b8a8-d6bce0942f91 -[I 2022-11-29 09:00:56.222 ServerApp] Kernel shutdown: 2910ab38-eb5a-47ef-b8a8-d6bce0942f91 -[W 2022-11-29 09:00:56.470 ServerApp] delete /results/2022-1101/Untitled1.ipynb -[I 2022-11-29 09:02:58.700 ServerApp] Saving file at /results/2022-1101/Untitled.ipynb -[I 2022-11-29 09:21:29.112 ServerApp] Saving file at /results/2022-1101/Untitled.ipynb -[I 2022-11-29 09:24:02.430 ServerApp] Saving file at /results/2022-1101/Untitled.ipynb -[W 2022-11-29 09:24:22.450 ServerApp] 404 GET /api/contents/results/2022-1101/work-Python-local.ipynb?1669742662442 (::1): file or directory does not exist: 'results/2022-1101/work-Python-local.ipynb' -[W 2022-11-29 09:24:22.451 ServerApp] wrote error: "file or directory does not exist: 'results/2022-1101/work-Python-local.ipynb'" -[W 2022-11-29 09:24:22.460 ServerApp] 404 GET /api/contents/results/2022-1101/work-Python-local.ipynb?1669742662442 (::1) 12.24ms referer=http://localhost:8888/lab/tree/results/2022-1101/Untitled.ipynb -[W 2022-11-29 09:24:22.471 ServerApp] 404 GET /api/contents/results/2022-1101/work-Python-local.ipynb?content=0&1669742662469 (::1): file or directory does not exist: 'results/2022-1101/work-Python-local.ipynb' -[W 2022-11-29 09:24:22.472 ServerApp] wrote error: "file or directory does not exist: 'results/2022-1101/work-Python-local.ipynb'" -[W 2022-11-29 09:24:22.472 ServerApp] 404 GET /api/contents/results/2022-1101/work-Python-local.ipynb?content=0&1669742662469 (::1) 1.16ms referer=http://localhost:8888/lab/tree/results/2022-1101/Untitled.ipynb -[I 2022-11-29 09:24:22.476 ServerApp] Uploading file to /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 09:25:01.756 ServerApp] Kernel shutdown: 68897743-b29a-4ff6-8187-8c41d33d8f5f -^C[I 2022-11-29 09:25:06.372 ServerApp] interrupted -Serving notebooks from local directory: /Users/kalavatt/projects-etc/2022_transcriptome-construction -0 active kernels -Jupyter Server 1.23.3 is running at: -http://localhost:8888/lab?token=3e03d1ffc651655e8fb98316ad7ea4127550fd731bdc8ccc - or http://127.0.0.1:8888/lab?token=3e03d1ffc651655e8fb98316ad7ea4127550fd731bdc8ccc -Shutdown this Jupyter server (y/[n])? y -[C 2022-11-29 09:25:08.220 ServerApp] Shutdown confirmed -[I 2022-11-29 09:25:08.223 ServerApp] Shutting down 3 extensions -[I 2022-11-29 09:25:08.224 ServerApp] Shutting down 0 terminals -``` -
- - -### Install a variable inspector for `jupyterlab` -To do so, follow the advice for Jupyter Lab at this link (but use `conda`/`mamba`, not `pip`) -```bash -#!/bin/bash -#DONTRUN #CONTINUE -mamba install -c conda-forge jupyterlab-variableinspector -``` - -
-mamba install -c conda-forge jupyterlab-variableinspector messages printed to terminal: - -```txt - - __ __ __ __ - / \ / \ / \ / \ - / \/ \/ \/ \ -███████████████/ /██/ /██/ /██/ /████████████████████████ - / / \ / \ / \ / \ \____ - / / \_/ \_/ \_/ \ o \__, - / _/ \_____/ ` - |/ - ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ - ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ - ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ - ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ - ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ - ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝ - - mamba (0.27.0) supported by @QuantStack - - GitHub: https://github.com/mamba-org/mamba - Twitter: https://twitter.com/QuantStack - -█████████████████████████████████████████████████████████████ - - -Looking for: ['jupyterlab-variableinspector'] - -conda-forge/noarch 10.4MB @ 3.6MB/s 3.1s -conda-forge/osx-64 25.5MB @ 2.4MB/s 11.2s - -Pinned packages: - - python 3.7.* - - -Transaction - - Prefix: /Users/kalavatt/mambaforge/envs/Trinity_env - - Updating specs: - - - jupyterlab-variableinspector - - ca-certificates - - certifi - - openssl - - - Package Version Build Channel Size -────────────────────────────────────────────────────────────────────────────────────── - Install: -────────────────────────────────────────────────────────────────────────────────────── - - + jupyterlab-variableinspector 3.0.9 pyhd8ed1ab_0 conda-forge/noarch 54kB - - Summary: - - Install: 1 packages - - Total download: 54kB - -────────────────────────────────────────────────────────────────────────────────────── - -Confirm changes: [Y/n] T -Confirm changes: [Y/n] Y -jupyterlab-variableinspector 54.4kB @ 405.9kB/s 0.1s -Preparing transaction: done -Verifying transaction: done -Executing transaction: done -``` -
- - -### Install a linter for `jupyterlab` -```bash -#!/bin/bash -#DONTRUN #CONTINUE -mamba install -c conda-forge pycodestyle -``` - -
-mamba install -c conda-forge pycodestyle messages printed to terminal: - -```txt - - __ __ __ __ - / \ / \ / \ / \ - / \/ \/ \/ \ -███████████████/ /██/ /██/ /██/ /████████████████████████ - / / \ / \ / \ / \ \____ - / / \_/ \_/ \_/ \ o \__, - / _/ \_____/ ` - |/ - ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ - ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ - ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ - ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ - ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ - ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝ - - mamba (0.27.0) supported by @QuantStack - - GitHub: https://github.com/mamba-org/mamba - Twitter: https://twitter.com/QuantStack - -█████████████████████████████████████████████████████████████ - - -Looking for: ['pycodestyle'] - -conda-forge/noarch 10.4MB @ 2.5MB/s 4.4s -conda-forge/osx-64 25.5MB @ 3.3MB/s 8.4s - -Pinned packages: - - python 3.7.* - - -Transaction - - Prefix: /Users/kalavatt/mambaforge/envs/Trinity_env - - Updating specs: - - - pycodestyle - - ca-certificates - - certifi - - openssl - - - Package Version Build Channel Size -───────────────────────────────────────────────────────────────────── - Install: -───────────────────────────────────────────────────────────────────── - - + pycodestyle 2.10.0 pyhd8ed1ab_0 conda-forge/noarch 43kB - - Summary: - - Install: 1 packages - - Total download: 43kB - -───────────────────────────────────────────────────────────────────── - -Confirm changes: [Y/n] Y -pycodestyle 42.5kB @ 204.2kB/s 0.2s -Preparing transaction: done -Verifying transaction: done -Executing transaction: done -``` -
- - -### Opening the console for a notebook -Right click on the notebook and select `New Console for Notebook` - - -### Cool layout for `Jupyter Lab` -- Top right: Variable Explorer -- Top left: Notebbok -- Bottom right: Show Contextual Help (and possibly other things) -- Bottom left: Console(s) (and possibly other things) -
-
- - -## Step through portions of `*-filter-uncorrectable-fastq.py*` -`#DONE` Copy `08_rcorrector/` (~754.5 MB) in `exp_preprocessing/` from remote (FHCC `rhino`/`gizmo`) to local, Apple M1 Max -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Run Jupyter Lab -jupyter lab -``` -
-jupyter lab messages printed to terminal: - -\#1 -```txt -[I 2022-11-29 09:30:49.130 ServerApp] jupyterlab | extension was successfully linked. -[I 2022-11-29 09:30:49.137 ServerApp] nbclassic | extension was successfully linked. -[I 2022-11-29 09:30:49.272 ServerApp] notebook_shim | extension was successfully linked. -[I 2022-11-29 09:30:49.298 ServerApp] notebook_shim | extension was successfully loaded. -[I 2022-11-29 09:30:49.299 LabApp] JupyterLab extension loaded from /Users/kalavatt/mambaforge/envs/Trinity_env/lib/python3.7/site-packages/jupyterlab -[I 2022-11-29 09:30:49.299 LabApp] JupyterLab application directory is /Users/kalavatt/mambaforge/envs/Trinity_env/share/jupyter/lab -[I 2022-11-29 09:30:49.302 ServerApp] jupyterlab | extension was successfully loaded. -[I 2022-11-29 09:30:49.305 ServerApp] nbclassic | extension was successfully loaded. -[I 2022-11-29 09:30:49.306 ServerApp] Serving notebooks from local directory: /Users/kalavatt/projects-etc/2022_transcriptome-construction -[I 2022-11-29 09:30:49.306 ServerApp] Jupyter Server 1.23.3 is running at: -[I 2022-11-29 09:30:49.306 ServerApp] http://localhost:8888/lab?token=4c4c55ecc208a98b02a11f66ad46b5c0c0925490582a41d8 -[I 2022-11-29 09:30:49.306 ServerApp] or http://127.0.0.1:8888/lab?token=4c4c55ecc208a98b02a11f66ad46b5c0c0925490582a41d8 -[I 2022-11-29 09:30:49.306 ServerApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation). -[C 2022-11-29 09:30:49.309 ServerApp] - - To access the server, open this file in a browser: - file:///Users/kalavatt/Library/Jupyter/runtime/jpserver-34460-open.html - Or copy and paste one of these URLs: - http://localhost:8888/lab?token=4c4c55ecc208a98b02a11f66ad46b5c0c0925490582a41d8 - or http://127.0.0.1:8888/lab?token=4c4c55ecc208a98b02a11f66ad46b5c0c0925490582a41d8 -[W 2022-11-29 09:31:29.828 LabApp] Could not determine jupyterlab build status without nodejs -[I 2022-11-29 09:31:44.683 ServerApp] Kernel started: f284b27f-1b50-409d-9bfe-a70ff97e5429 -[W 2022-11-29 09:31:45.329 ServerApp] Got events for closed stream -[I 2022-11-29 09:33:44.635 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 09:37:45.126 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 09:39:45.178 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 09:43:46.116 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 09:45:46.162 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 09:47:46.199 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 09:49:46.242 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 09:51:46.293 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 09:53:03.574 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 09:55:03.628 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 09:57:03.681 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 09:59:03.730 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 09:59:41.806 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 10:01:41.868 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 10:03:41.924 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 10:07:41.976 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 10:09:43.123 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 10:14:01.722 ServerApp] Saving file at /results/2022-1101/work-Python-local.ipynb -[I 2022-11-29 10:15:42.937 ServerApp] Starting buffering for f284b27f-1b50-409d-9bfe-a70ff97e5429:207e657c-dfee-43c2-9e6d-ab7eafe56a7d -^C[I 2022-11-29 10:15:46.786 ServerApp] interrupted -Serving notebooks from local directory: /Users/kalavatt/projects-etc/2022_transcriptome-construction -1 active kernel -Jupyter Server 1.23.3 is running at: -http://localhost:8888/lab?token=4c4c55ecc208a98b02a11f66ad46b5c0c0925490582a41d8 - or http://127.0.0.1:8888/lab?token=4c4c55ecc208a98b02a11f66ad46b5c0c0925490582a41d8 -Shutdown this Jupyter server (y/[n])? y -[C 2022-11-29 10:15:49.168 ServerApp] Shutdown confirmed -[I 2022-11-29 10:15:49.171 ServerApp] Shutting down 3 extensions -[I 2022-11-29 10:15:49.171 ServerApp] Shutting down 1 kernel -[I 2022-11-29 10:15:49.172 ServerApp] Kernel shutdown: f284b27f-1b50-409d-9bfe-a70ff97e5429 -[I 2022-11-29 10:15:49.286 ServerApp] Shutting down 0 terminals -``` - -\#2 -```txt -#NOTE Did not copy it in -``` -
-
- -`#NOTE` Determined that it will be easier to use a full `Python` IDE (e.g., `Spyder`) to do this work, so deleted the `.ipynb` file in which I was attempting to do this step-through work -`#NOTE` Still, setting up and customizing `jupyterlab` was still valuable and worth the time; I can see myself bouncing between notebooks and the full IDE when coding in Python in the future, based on the requirements and goals of the project -`#NOTE` The work to update the `rCorrector`-correction script can seen by comparing `GitHub` commits - - diff --git a/results/2022-1101/work-TPM-calculation.md b/results/2022-1101/work-TPM-calculation.md deleted file mode 100644 index d2e297e..0000000 --- a/results/2022-1101/work-TPM-calculation.md +++ /dev/null @@ -1,707 +0,0 @@ - -# 2022-1101 -
-Table of Contents - - -1. [Implementing the proper calculation of TPM](#implementing-the-proper-calculation-of-tpm) - 1. [Build out the script for calling `picardmetrics`](#build-out-the-script-for-calling-picardmetrics) - - -
-
- - -## Implementing the proper calculation of TPM -- The following steps were put together after having read, in particular, [the reponse from `slowkow` to this post](https://www.biostars.org/p/171766/); another post is also quite useful, [particularly the comment from Heng Li](https://www.biostars.org/p/216616/#216678) -- Adapt [this script](https://gist.github.com/slowkow/8101509) to calculate the number of coding bases per gene -- Parse information collected by [`picardmetrics`](https://github.com/slowkow/picardmetrics) to get the mean fragment length for each library - - `.gtf` file for genome of interest, e.g., `~/genomes/sacCer3/Ensembl/108/gtf/Saccharomyces_cerevisiae.R64-1-1.108.gtf` - - The `.gtf` file is used to generate, in turn, a `.refFlat` file, the file type actually needed by `picardmetrics` - - The `.gtf` file is also used to generate a `.rRNA.list` file, a file that provides "location\[s\] of rRNA sequences in genome, in interval_list format" per [here](https://broadinstitute.github.io/picard/command-line-overview.html#CollectRnaSeqMetrics) - - `picardmetrics` has a subcommand to generate these files - - `.refFlat` files: `picardmetrics refFlat "${gtf}"` - - `.rRNA.list` files: `picardmetrics rRNA "${gtf}"` - - `.fasta` file for genome of interest, e.g., `~/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta` -- Adapt [this script](https://www.biostars.org/p/216616/#216678) to convert raw counts (from `subread featureCounts`, I think `#TODO Check on this`) to TPM - - -### Build out the script for calling `picardmetrics` -...a necessary *(?)* step prior to calculating TPM -- Calling `picardmetrics` is necessary for getting the mean fragment length per library -- It has the added benefit of providing many other quality-control metrics for the RNA-seq libraries, which will likely benefit me and Alison as we move forward with this work -- `#DONE` Before setting up the script, install `picardmetrics` on the FHCC cluster - + See [notes on the installation (which was somewhat tricky) here](https://gist.github.com/kalavattam/74394ed83c542862e087658accbdbc38)) -```bash -#!/bin/bash -#DONTRUN - -grabnode # 1 core, default memory, 1 day, default GPU -# Run through each line or chunk below... - - -# name-of-script #TODO -# KA - - -# Source functions ----------------------------------------------------------- -check_dependency() { - # Check if program is available in "${PATH}"; exit if not - # - # :param 1: program/package - command -v "${1}" &>/dev/null || - { - echo "Exiting: ${1} not found. Install ${1}." - # exit 1 - } -} - - -print_usage() { - # Print the help message and exit - echo "${help}" - # exit 1 -} - - -# Handle arguments, assign variables ----------------------------------------- -help=""" -Run picardmetrics on .bam files to check the quality of sequencing data. Among -other things, running picardmetrics provide information on library mean -fragment length, which is necessary for the calculation of TPM. - -Dependencies: - - picardmetrics == 0.2.4 (2016-07-06) - - #TBD - -Arguments: - -h print this help message and exit - -u use safe mode: \"TRUE\" or \"FALSE\" - -i directory containing infiles, including path - -g gtf, including path - -f fasta for reference genome, including path - -o outfile directory, including path; if not found, will be mkdir'd - -t number of threads; options: 1, 2, 4, or 8 - -r bam(s) from RNA-seq exp.: \"TRUE\" or \"FALSE\" - -Notes: - - \"safe mode\" is untested -""" - -# while getopts "h:u:i:g:f:o:t:r:" opt; do -# case "${opt}" in -# h) echo "${help}" && exit ;; -# u) safe_mode="${OPTARG}" ;; -# i) dir_infiles="${OPTARG}" ;; -# g) gtf="${OPTARG}" ;; -# f) fasta="${OPTARG}" ;; -# o) outdir="${OPTARG}" ;; -# t) threads="${OPTARG}" ;; -# r) RNAseq="${OPTARG}" ;; -# *) print_usage ;; -# esac -# done -# -# [[ -z "${safe_mode}" ]] && safe_mode=FALSE -# [[ -z "${dir_infiles}" ]] && print_usage -# [[ -z "${gtf}" ]] && print_usage -# [[ -z "${fasta}" ]] && print_usage -# [[ -z "${outdir}" ]] && print_usage -# [[ -z "${threads}" ]] && threads=2 -# [[ -z "${RNAseq}" ]] && RNAseq=TRUE - -# Assignments for tests (to be commented out) -safe_mode=FALSE -dir_infiles="${HOME}/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq" -gtf="${HOME}/genomes/sacCer3/Ensembl/108/gtf/Saccharomyces_cerevisiae.R64-1-1.108.plus-chr-rename.gtf" #UPDATED -fasta="${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.plus-chr-rename.fasta" #UPDATED -outdir="${HOME}/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1101" -threads=1 -RNAseq=TRUE - -echo "${safe_mode}" -echo "${dir_infiles}" -echo "${gtf}" -echo "${fasta}" -echo "${outdir}" -echo "${threads}" -echo "${RNAseq}" - - -# Check variable and array assignments, and dependencies too ----------------- -echo "" -echo "Running ${0}... " - -# ------------------------------------- -# Evaluate "${safe_mode}" #TODO Test if/how this works -case "$(echo "${safe_mode}" | tr '[:upper:]' '[:lower:]')" in - true | t) \ - echo -e "-u: \"Safe mode\" is TRUE.\n" && set -Eeuxo pipefail ;; - false | f) \ - echo -e "-u: \"Safe mode\" is FALSE.\n" ;; - *) \ - echo -e "Exiting: -u \"safe mode\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; -esac - -# ------------------------------------- -# Check that "${dir_infiles}" exists; exit if it doesn't -[[ -d "${dir_infiles}" ]] || - { - echo -e "Exiting: -i ${dir_infiles} does not exist.\n" - # exit 1 - } - -# ------------------------------------- -# Grab the bam infiles in the above directory; throw an error and exit if none -#+ are found -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - # shellcheck disable=SC2061 - find "${dir_infiles}" \ - -maxdepth 1 \ - -type f \ - -name "*.bam" \ - -print0 \ - | sort -z \ -) -# for i in "${infiles[@]}"; do echo "${i}"; done - -# If no files are found, then exit with a warning message -if [[ "${#infiles[@]}" -eq 0 ]]; then - echo -e "Exiting: -i: zero bam files were found.\n" - # exit 1 -elif [[ "${#infiles[@]}" -gt 0 ]]; then - : # Do nothing and continue on in the script -fi - -# Report on what the bam files are -echo "The bam infiles are..." -for i in "${infiles[@]}"; do printf %s"\n" " - ${i}"; done -echo "" - -# ------------------------------------- -# Check that "${gtf}" exists; exit if it doesn't -[[ -f "${gtf}" ]] || - { - echo -e "Exiting: -g ${gtf} does not exist.\n" - # exit 1 - } - -# ------------------------------------- -# Based on "${gtf}", derive names of rRNA.list and refFlat files, and then -#+ check if they exist or not; if not, set flags to signify that they need to -#+ be generated (done by picardmetrics) -dir_gtf="$(dirname "${gtf}")" -dir_up="${dir_gtf%/*}" - -[[ -d ${dir_up} ]] || - { - echo -e "Exiting: -g ${dir_up} (upstream directory for gtf file) does not seem to exist?\n" - # exit 1 - } - -file_rRNA="$(basename "${gtf%.gtf}.rRNA.list")" -file_refFlat="$(basename "${gtf%.gtf}.refFlat")" - -rRNA="${dir_up}/rRNA/${file_rRNA}" -refFlat="${dir_up}/refFlat/${file_refFlat}" - -flag_rRNA=0 -[[ -f "${rRNA}" ]] || - { - [[ -d "$(dirname ${rRNA})" ]] || - { - mkdir -p "$(dirname ${rRNA})" - } - flag_rRNA=1 - } - -flag_refFlat=0 -[[ -f "${refFlat}" ]] || - { - [[ -d "$(dirname ${refFlat})" ]] || - { - mkdir -p "$(dirname ${refFlat})" - } - flag_refFlat=1 - } - -# ------------------------------------- -# Check that "${fasta}" exists; exit if it doesn't -[[ -f "${fasta}" ]] || - { - echo -e "Exiting: -f ${fasta} does not exist.\n" - # exit 1 - } - -# ------------------------------------- -# Check that "${outdir}" exists; if not, create "${outdir}" -[[ -d "${outdir}" ]] || - { - echo -e "-o: Directory ${outdir} does not exist; making the directory.\n" - mkdir -p "${outdir}" - } - -# ------------------------------------- -# Check on the specified (or default) number of threads; exit if not specific -case "${threads}" in - 1 | 2 | 4 | 8) : ;; # Do nothing and move on - *) \ - echo -e "Exiting: -p ${threads} must be either 1, 2, 4, or 8.\n" - # exit 1 - ;; -esac - -# Set flag_threads=1 if "${threads}" > 1 -flag_threads=0 -if (( "${threads}" > 1 )); then flag_threads=1; fi - -# ------------------------------------- -# Evaluate "${RNAseq}" -case "$(echo "${RNAseq}" | tr '[:upper:]' '[:lower:]')" in - true | t) \ - echo -e "-r: \"RNA-seq\" is TRUE.\n" && \ - flag_RNAseq=1 - ;; - false | f) \ - echo -e "-r: \"RNA-seq\" is FALSE.\n" && \ - flag_RNAseq=0 - ;; - *) \ - echo -e "Exiting: -r \"RNA-seq\" argument must be TRUE or FALSE.\n" - # exit 1 - ;; -esac - -# ------------------------------------- -# Load and then check for necessary dependencies; exit if not found -modules=( - # Need to load java? - "Java/1.8.0_181" - "parallel/20210322-GCCcore-10.2.0" - "R/4.2.0-foss-2021b" -) -for i in "${modules[@]}"; do ml "${i}"; done -check_dependency java -check_dependency parallel #TODO Need to check on version too (>20200101) -check_dependency picardmetrics -check_dependency R -check_dependency Rscript - - -# Check on and/or prepare rRNA and refFlat files needed by picardmetrics ----- -if [[ "${flag_rRNA}" == 1 ]]; then - echo "Generating a list of genomic intervals for rRNA genes: $(basename ${rRNA})" - echo "" - - picardmetrics rRNA "${gtf}" - - mv "$(dirname "${gtf}")/$(basename "${rRNA}")" "$(dirname ${rRNA})" - - cd - -fi - -if [[ "${flag_refFlat}" == 1 ]]; then - echo "Generating a refFlat file: $(basename ${refFlat})" - echo "" - - picardmetrics refFlat "${gtf}" - - mv "$(dirname "${gtf}")/$(basename ${refFlat})" "$(dirname ${refFlat})" - - cd - -fi - - -# If present, then remove and regenerate "${outdir}/picardmetrics.conf" ---------------- -# Otherwise, generate picardmetrics.conf -if [[ -f "${outdir}/picardmetrics.conf" ]]; then - rm -- "${outdir}/picardmetrics.conf" -fi - -cat << configuration > "${outdir}/picardmetrics.conf" -# ~/picardmetrics.conf -# Change the values of these variables to match your system configuration. - -# Write temporary files here. -TEMP_DIR="\${TMPDIR}" - -# Run all jobs with niceness to avoid interrupting interactive sessions. -NICENESS=20 - -# Picard Tools jar file. -PICARD_JAR="\${HOME}/src/picard-tools-1.126/picard.jar" - -# Java invocation of Picard Tools. -PICARD="java -Xms5g -Xmx5g -jar \${PICARD_JAR}" - -# Reference genome sequence. -REFERENCE_SEQUENCE="${fasta}" - -# Only for RNA-seq: annotations for all gene features. -REF_FLAT="${refFlat}" - -# Only for RNA-seq: all genomic intervals for ribosomal RNA genes. -RIBOSOMAL_INTERVALS="${rRNA}" -configuration - -if [[ -f "${outdir}/picardmetrics.conf" ]]; then - : -else - echo "Exiting: picardmetrics.conf not found in ${outdir}; check on this." - # exit 1 -fi - - -# Run picardmetrics; use GNU parallel if flag_threads=1 ---------------------- -if [[ "${flag_RNAseq}" -eq 1 ]]; then - if [[ "${flag_threads}" -eq 0 ]]; then - echo "Running picardmetrics in serial" - echo "" - - for i in "${infiles[@]}"; do - echo "Working with ${i}..." - picardmetrics run \ - -f "${outdir}/picardmetrics.conf" \ - -o "${outdir}" \ - -r \ - -k \ - "${i}" - - echo "" - done - elif [[ "${flag_threads}" -eq 1 ]]; then - echo "Running picardmetrics in parallel with ${threads} threads" - echo "" - - parallel --header : --colsep " " -k -j "${threads}" \ - "picardmetrics run \ - -f {configuration} \ - -o {outdir} \ - -r \ - -k \ - {infiles}" \ - ::: configuration "${outdir}/picardmetrics.conf" \ - ::: outdir "${outdir}" \ - ::: infiles "${infiles[@]}" - fi -elif [[ "${flag_RNAseq}" -eq 0 ]]; then - if [[ "${flag_threads}" -eq 0 ]]; then - echo "Running picardmetrics in serial" - echo "" - - for i in "${infiles[@]}"; do - echo "Working with ${i}..." - picardmetrics run \ - -f "${outdir}/picardmetrics.conf" \ - -o "${outdir}" \ - -k \ - "${i}" - - echo "" - done - elif [[ "${flag_threads}" -eq 1 ]]; then - echo "Running picardmetrics in parallel with ${threads} threads" - echo "" - - parallel --header : --colsep " " -k -j "${threads}" \ - "picardmetrics run \ - -f {configuration} \ - -o {outdir} \ - -k \ - {infiles}" \ - ::: configuration "${outdir}/picardmetrics.conf" \ - ::: outdir "${outdir}" \ - ::: infiles "${infiles[@]}" - fi -fi -``` - -After setting up and stepping through things, getting this chromosome name-related error: -```txt -Running picardmetrics in serial - -Working with /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq/5781_G1_IN_sorted.bam... -picardmetrics version 0.2.4 2016-07-06 -2022-11-01 13:55:12 picardmetrics config: '/home/kalavatt/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1101/picardmetrics.conf' -2022-11-01 13:55:12 START /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq/5781_G1_IN_sorted.bam -2022-11-01 13:55:12 CreateSequenceDictionary -2022-11-01 13:55:13 ReorderSam -ERROR: ReorderSam failed. See: /home/kalavatt/tsukiyamalab/Kris/2022_transcriptome-construction/results/2022-1101/5781_G1_IN_sorted.ReorderSam.log -[Tue Nov 01 13:55:13 PDT 2022] picard.sam.ReorderSam INPUT=/loc/scratch/3151686/picardmetrics_kalavatt_18572/home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq/5781_G1_IN_sorted.bam OUTPUT=/loc/scratch/3151686/picardmetrics_kalavatt_18572/home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq/5781_G1_IN_sorted.ReorderSam.bam REFERENCE=/home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta TMP_DIR=[/loc/scratch/3151686/picardmetrics_kalavatt_18572/home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq] VALIDATION_STRINGENCY=LENIENT ALLOW_INCOMPLETE_DICT_CONCORDANCE=false ALLOW_CONTIG_LENGTH_DISCORDANCE=false VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false -[Tue Nov 01 13:55:13 PDT 2022] Executing as kalavatt@gizmoj37 on Linux 4.15.0-192-generic amd64; Java HotSpot(TM) 64-Bit Server VM 1.8.0_181-b13; Picard version: 1.126(4691ee611ac205d4afe2a1b7a2ea975a6f997426_1417447214) IntelDeflater -INFO 2022-11-01 13:55:13 ReorderSam SAM/BAM file -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrI230218 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrII813184 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrIII316620 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrIV1531933 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrIX439888 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrM85779 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrV576874 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrVI270161 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrVII1090940 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrVIII562643 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrX745751 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrXI666816 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrXII1078177 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrXIII924431 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrXIV784333 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrXV1091291 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nchrXVI948066 -INFO 2022-11-01 13:55:13 ReorderSam Reference -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nI230218 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nII813184 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nIII316620 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nIV1531933 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nV576874 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nVI270161 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nVII1090940 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nVIII562643 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nIX439888 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nX745751 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nXI666816 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nXII1078177 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nXIII924431 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nXIV784333 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nXV1091291 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nXVI948066 -INFO 2022-11-01 13:55:13 ReorderSam SN=%s LN=%d%nMito85779 -INFO 2022-11-01 13:55:13 ReorderSam Reordering SAM/BAM file: -[Tue Nov 01 13:55:14 PDT 2022] picard.sam.ReorderSam done. Elapsed time: 0.00 minutes. -Runtime.totalMemory()=5189795840 -To get help, see http://broadinstitute.github.io/picard/index.html#GettingHelp -Exception in thread "main" picard.PicardException: New reference sequence does not contain a matching contig for chrI - at picard.sam.ReorderSam.buildSequenceDictionaryMap(ReorderSam.java:229) - at picard.sam.ReorderSam.doWork(ReorderSam.java:110) - at picard.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:187) - at picard.cmdline.PicardCommandLine.instanceMain(PicardCommandLine.java:89) - at picard.cmdline.PicardCommandLine.main(PicardCommandLine.java:99) -mv: cannot stat '/loc/scratch/3151686/picardmetrics_kalavatt_18572//home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq/5781_G1_IN_sorted.ReorderSam.bam': No such file or directory -ERROR: Failed to move '/loc/scratch/3151686/picardmetrics_kalavatt_18572//home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq/5781_G1_IN_sorted.ReorderSam.bam' to '/loc/scratch/3151686/picardmetrics_kalavatt_18572//home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq/5781_G1_IN_sorted.bam' -``` - -Make a new `.fasta` file with *chr*-styled names: -```bash -#!/bin/bash -#DONTRUN - -#QUESTION What do the chromosomes look like in the bam file(s)? --------------- -cd "${dir_infiles}" # dir_infiles=${HOME}/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/S_cerevisiae_BamFiles/HTSeq -ml SAMtools/1.16.1-GCC-11.2.0 - -samtools idxstats "5781_G1_IN_sorted.bam" | cut -f 1 -# chrI -# chrII -# chrIII -# chrIV -# chrIX -# chrM -# chrV -# chrVI -# chrVII -# chrVIII -# chrX -# chrXI -# chrXII -# chrXIII -# chrXIV -# chrXV -# chrXVI - - -# Create a version of the gtf file with the above-styled chromosome names ---- -cd "${HOME}/genomes/sacCer3/Ensembl/108/gtf" - -cat "Saccharomyces_cerevisiae.R64-1-1.108.gtf" \ - | cut -f 1 \ - | sort \ - | uniq -# I -# II -# III -# IV -# IX -# Mito -# V -# VI -# VII -# VIII -# X -# XI -# XII -# XIII -# XIV -# XV -# XVI - -cp \ -"Saccharomyces_cerevisiae.R64-1-1.108.gtf" \ -"Saccharomyces_cerevisiae.R64-1-1.108.gtf.bak" - -# gist.github.com/sahilseth/f91553f6f617f91363e7 -cat "Saccharomyces_cerevisiae.R64-1-1.108.gtf" \ - | awk '{ if($1 !~ /^#/){print "chr"$0} else{print $0} }' \ - > "Saccharomyces_cerevisiae.R64-1-1.108.plus-chr-rename.gtf" - -cat "Saccharomyces_cerevisiae.R64-1-1.108.plus-chr-rename.gtf" \ - | cut -f 1 \ - | sort \ - | uniq -# chrI -# chrII -# chrIII -# chrIV -# chrIX -# chrMito -# chrV -# chrVI -# chrVII -# chrVIII -# chrX -# chrXI -# chrXII -# chrXIII -# chrXIV -# chrXV -# chrXVI -cp \ -"Saccharomyces_cerevisiae.R64-1-1.108.plus-chr-rename.gtf" \ -"Saccharomyces_cerevisiae.R64-1-1.108.plus-chr-rename.gtf.bak" - -sed -i \ -'s/chrMito/chrM/g' \ -"Saccharomyces_cerevisiae.R64-1-1.108.plus-chr-rename.gtf" - -cat "Saccharomyces_cerevisiae.R64-1-1.108.plus-chr-rename.gtf" \ - | cut -f 1 \ - | sort \ - | uniq -# chrI -# chrII -# chrIII -# chrIV -# chrIX -# chrM -# chrV -# chrVI -# chrVII -# chrVIII -# chrX -# chrXI -# chrXII -# chrXIII -# chrXIV -# chrXV -# chrXVI - -cat "Saccharomyces_cerevisiae.R64-1-1.108.plus-chr-rename.gtf.bak" \ - | cut -f 1 \ - | sort \ - | uniq -#NOTE chrMito has been changed to chrM; can delete *.plus-chr-rename.gtf.bak -rm -- *.plus-chr-rename.gtf.bak -rm -- *.gtf.bak - - -# Create a version of the fasta file with the above-styled chromosome names -- -cd "${HOME}/genomes/sacCer3/Ensembl/108/DNA" - -zcat "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.gz" \ - | grep "^>" -# >I dna:chromosome chromosome:R64-1-1:I:1:230218:1 REF -# >II dna:chromosome chromosome:R64-1-1:II:1:813184:1 REF -# >III dna:chromosome chromosome:R64-1-1:III:1:316620:1 REF -# >IV dna:chromosome chromosome:R64-1-1:IV:1:1531933:1 REF -# >V dna:chromosome chromosome:R64-1-1:V:1:576874:1 REF -# >VI dna:chromosome chromosome:R64-1-1:VI:1:270161:1 REF -# >VII dna:chromosome chromosome:R64-1-1:VII:1:1090940:1 REF -# >VIII dna:chromosome chromosome:R64-1-1:VIII:1:562643:1 REF -# >IX dna:chromosome chromosome:R64-1-1:IX:1:439888:1 REF -# >X dna:chromosome chromosome:R64-1-1:X:1:745751:1 REF -# >XI dna:chromosome chromosome:R64-1-1:XI:1:666816:1 REF -# >XII dna:chromosome chromosome:R64-1-1:XII:1:1078177:1 REF -# >XIII dna:chromosome chromosome:R64-1-1:XIII:1:924431:1 REF -# >XIV dna:chromosome chromosome:R64-1-1:XIV:1:784333:1 REF -# >XV dna:chromosome chromosome:R64-1-1:XV:1:1091291:1 REF -# >XVI dna:chromosome chromosome:R64-1-1:XVI:1:948066:1 REF -# >Mito dna:chromosome chromosome:R64-1-1:Mito:1:85779:1 REF - -cat "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - | grep "^>" -# >I -# >II -# >III -# >IV -# >V -# >VI -# >VII -# >VIII -# >IX -# >X -# >XI -# >XII -# >XIII -# >XIV -# >XV -# >XVI -# >Mito - -cp \ -"Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ -"Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.plus-chr-rename.fasta" - -sed -i \ -"s/>/>chr/g" \ -"Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.plus-chr-rename.fasta" - -cat "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.plus-chr-rename.fasta" \ - | grep "^>" -# >chrI -# >chrII -# >chrIII -# >chrIV -# >chrV -# >chrVI -# >chrVII -# >chrVIII -# >chrIX -# >chrX -# >chrXI -# >chrXII -# >chrXIII -# >chrXIV -# >chrXV -# >chrXVI -# >chrMito - -sed -i \ -"s/>chrMito/>chrM/g" \ -"Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.plus-chr-rename.fasta" -# >chrI -# >chrII -# >chrIII -# >chrIV -# >chrV -# >chrVI -# >chrVII -# >chrVIII -# >chrIX -# >chrX -# >chrXI -# >chrXII -# >chrXIII -# >chrXIV -# >chrXV -# >chrXVI -# >chrM - -# Go back up to the writing/stepping-through code chunk and replace in -#+ *.plus-chr-rename.* .gtf and .fasta files -``` -
-
diff --git a/results/2022-1101/work-Trinity-1.md b/results/2022-1101/work-Trinity-1.md deleted file mode 100644 index 91597e1..0000000 --- a/results/2022-1101/work-Trinity-1.md +++ /dev/null @@ -1,6540 +0,0 @@ - -`#2022-1102-1126` -
-
- -
-Table of contents - - -1. [Get another trial run of `Trinity` going](#get-another-trial-run-of-trinity-going) - 1. [Meaning of `Trinity` parameters used](#meaning-of-trinity-parameters-used) -1. [Continued reading, studying regarding `Trinity`](#continued-reading-studying-regarding-trinity) - 1. [Outstanding, ongoing questions, points, etc.](#outstanding-ongoing-questions-points-etc) - 1. [In-progress steps of the pipeline](#in-progress-steps-of-the-pipeline) - 1. [In-progress list of packages for the pipeline](#in-progress-list-of-packages-for-the-pipeline) - 1. [References for the experimental design/pipeline](#references-for-the-experimental-designpipeline) - 1. [Notes from the references listed above](#notes-from-the-references-listed-above) - 1. [McIlwain et al. \(Hittinger\), *G3* 2016](#mcilwain-et-al-hittinger-g3-2016) - 1. [From *Materials and Methods*](#from-materials-and-methods) - 1. [From *File S1*](#from-file-s1) - 1. [*TBD*, Best Practices for *De Novo* Transcriptome Assembly..., Harvard FAS Informatics 2021-0305](#tbd-best-practices-for-de-novo-transcriptome-assembly-harvard-fas-informatics-2021-0305) - 1. [Blevins et al. \(Mar Alba\), bioRxiv 2019-0313](#blevins-et-al-mar-alba-biorxiv-2019-0313) - 1. [From *Results*](#from-results) - 1. [From *Supplementary Figure 1*](#from-supplementary-figure-1) - 1. [From *Methods*](#from-methods) - 1. [Haas, Build a Comprehensive Transcriptome Database..., GitHub *TBD*](#haas-build-a-comprehensive-transcriptome-database-github-tbd) - 1. [Build a Comprehensive Transcriptome Database Using Genome-Guided and *De Novo* RNA-seq Assembly](#build-a-comprehensive-transcriptome-database-using-genome-guided-and-de-novo-rna-seq-assembly) - 1. [Leveraging RNA-seq by the `PASA` Pipeline](#leveraging-rna-seq-by-the-pasa-pipeline) - 1. [Leveraging RNA-seq by the `PASA` Pipeline](#leveraging-rna-seq-by-the-pasa-pipeline-1) - 1. [Strand-specific RNA-seq](#strand-specific-rna-seq) - 1. [Non-Strand-specific RNA-seq](#non-strand-specific-rna-seq) - 1. [Running the `PASA` Alignment Assembly Pipeline](#running-the-pasa-alignment-assembly-pipeline) - 1. [Running the Alignment Assembly Pipeline](#running-the-alignment-assembly-pipeline) - 1. [Step A: Cleaning the transcript sequences \(optional\)](#step-a-cleaning-the-transcript-sequences-optional) - 1. [Step B: Walking Thru A Complete Example Using the Provided Sample Data](#step-b-walking-thru-a-complete-example-using-the-provided-sample-data) - 1. [Introduction to `PASA`](#introduction-to-pasa) - 1. [`PASA` in the Context of a Complete Eukaryotic Annotation Pipeline](#pasa-in-the-context-of-a-complete-eukaryotic-annotation-pipeline) -1. [Sussing out the alignment work for the pipeline](#sussing-out-the-alignment-work-for-the-pipeline) - 1. [On calling `Bowtie 2`](#on-calling-bowtie-2) - 1. [Meaning of `Bowtie 2` parameters](#meaning-of-bowtie-2-parameters) - 1. [How we should call `Bowtie 2`](#how-we-should-call-bowtie-2) - 1. [On calling `STAR`](#on-calling-star) - 1. [Building a `STAR` genome index](#building-a-star-genome-index) - 1. [Meaning of `STAR` parameters for `genomeGenerate`](#meaning-of-star-parameters-for-genomegenerate) - 1. [How we should call `STAR`](#how-we-should-call-star) - 1. [Meaning of `STAR` parameters for `alignReads`](#meaning-of-star-parameters-for-alignreads) - 1. [Rationale behind parameters based on pertinent 'rna-star' Google group conversation](#rationale-behind-parameters-based-on-pertinent-rna-star-google-group-conversation) - 1. [Post #1, Marco, 2016-0502](#post-1-marco-2016-0502) - 1. [Post #2, Alex, 2016-0503](#post-2-alex-2016-0503) - 1. [Post #3, Marco, 2016-0504](#post-3-marco-2016-0504) - 1. [Post #4, Marco, 2016-0504](#post-4-marco-2016-0504) - 1. [Post #5, Marco, 2016-0504](#post-5-marco-2016-0504) - 1. [Implementing the alignment steps with `STAR` and `Bowtie 2`](#implementing-the-alignment-steps-with-star-and-bowtie-2) - 1. [Generating files needed for `STAR` alignment \(2022-1107\)](#generating-files-needed-for-star-alignment-2022-1107) - 1. [Preparing the `.fasta` and `.gff3` files for `STAR`](#preparing-the-fasta-and-gff3-files-for-star) - 1. [Getting the `.fastq` files of interest into one location](#getting-the-fastq-files-of-interest-into-one-location) - 1. [Checking on the length of reads for each `.fastq` file](#checking-on-the-length-of-reads-for-each-fastq-file) - 1. [Run `STAR` genome generation](#run-star-genome-generation) - 1. [Run `STAR` alignment](#run-star-alignment) - 1. [Alignment metrics for the test run of `STAR`](#alignment-metrics-for-the-test-run-of-star) - 1. [Thoughts on the alignment metrics for `STAR`:](#thoughts-on-the-alignment-metrics-for-star) - 1. [Examine the flags in the `.bam` outfile from the test run of `STAR`](#examine-the-flags-in-the-bam-outfile-from-the-test-run-of-star) - 1. [Additional thoughts on the alignment metrics and flags from `STAR`](#additional-thoughts-on-the-alignment-metrics-and-flags-from-star) - 1. [Do a little clean-up prior to running alignment with `Bowtie 2`](#do-a-little-clean-up-prior-to-running-alignment-with-bowtie-2) - 1. [Generating files needed for `Bowtie 2` alignment \(2022-1108\)](#generating-files-needed-for-bowtie-2-alignment-2022-1108) - 1. [Preparing the `.fasta` and `.gff3` files for `Bowtie 2`](#preparing-the-fasta-and-gff3-files-for-bowtie-2) - 1. [On the location of the `.fastq` files](#on-the-location-of-the-fastq-files) - 1. [Run `Bowtie 2` alignment](#run-bowtie-2-alignment) - 1. [Alignment metrics for the test run of `Bowtie 2`](#alignment-metrics-for-the-test-run-of-bowtie-2) - 1. [Thoughts on the alignment metrics for `Bowtie 2`](#thoughts-on-the-alignment-metrics-for-bowtie-2) - 1. [Examine the flags in the `.bam` outfile from the test run of `Bowtie 2`](#examine-the-flags-in-the-bam-outfile-from-the-test-run-of-bowtie-2) - 1. [Try re-running `Bowtie 2` alignment](#try-re-running-bowtie-2-alignment) - 1. [Alignment metrics for the *corrected* test run of Bowtie 2](#alignment-metrics-for-the-corrected-test-run-of-bowtie-2) - 1. [Thoughts on the alignment metrics for `Bowtie 2` \(*corrected*\)](#thoughts-on-the-alignment-metrics-for-bowtie-2-corrected) - 1. [Examine the flags in the `.bam` outfile from the *corrected* test run of `Bowtie 2`](#examine-the-flags-in-the-bam-outfile-from-the-corrected-test-run-of-bowtie-2) - 1. [Examine the `.fastq` outfiles from the *corrected* test run of `Bowtie 2`](#examine-the-fastq-outfiles-from-the-corrected-test-run-of-bowtie-2) - 1. [`head` through the `.bam` outfile from the *corrected* test run of `Bowtie 2`](#head-through-the-bam-outfile-from-the-corrected-test-run-of-bowtie-2) - 1. [More thoughts on multimappers \(2022-1109-1110, 1115\)](#more-thoughts-on-multimappers-2022-1109-1110-1115) - 1. [Conversation with Brian Haas, author/maintainer of Trinity](#conversation-with-brian-haas-authormaintainer-of-trinity) - 1. [Material on multimappers from the `STAR` documentation](#material-on-multimappers-from-the-star-documentation) - 1. [4.1 Multimappers.](#41-multimappers) - 1. [5.2.1 Multimappers.](#521-multimappers) - 1. [Mapping parameters used in Teissandier et al., *Mobile DNA* 2019](#mapping-parameters-used-in-teissandier-et-al-mobile-dna-2019) - 1. [Unique mode](#unique-mode) - 1. [Random mode](#random-mode) - 1. [Multi-hit mode](#multi-hit-mode) - 1. [Meaning of the `STAR` parameters for Teissandier-styled alignment](#meaning-of-the-star-parameters-for-teissandier-styled-alignment) - 1. [How we called `STAR` previously \(based on 'rna-star' post, not retaining multimappers\) vs. multi-hit mode](#how-we-called-star-previously-based-on-rna-star-post-not-retaining-multimappers-vs-multi-hit-mode) - 1. [Previous \(based on 'rna-star' post\):](#previous-based-on-rna-star-post) - 1. [Multi-hit mode:](#multi-hit-mode-1) - 1. [Going through the parameters, making comparisons between the two approaches:](#going-through-the-parameters-making-comparisons-between-the-two-approaches) - 1. [Assessing the "ingredients"](#assessing-the-ingredients) - 1. [How we should call `STAR` taking into account 'rna-star' and multi-hit mode parameters](#how-we-should-call-star-taking-into-account-rna-star-and-multi-hit-mode-parameters) - 1. [How are other groups calling `STAR` with *S. cerevisiae*?](#how-are-other-groups-calling-star-with-s-cerevisiae) - 1. [Dorfel et al. \(Lyon\), Yeast 2017](#dorfel-et-al-lyon-yeast-2017) - 1. [Jensen et al. \(Jensen\), *Nat Comm* 2022](#jensen-et-al-jensen-nat-comm-2022) - 1. [Software and parameter settings used by OneStopRNAseq v1.0.0](#software-and-parameter-settings-used-by-onestoprnaseq-v100) - 1. [Mendoza et al., *Sci Adv* 2022](#mendoza-et-al-sci-adv-2022) - 1. [VELCRO-IP RNA-seq Data Analysis: Read Alignment and Quantification](#velcro-ip-rna-seq-data-analysis-read-alignment-and-quantification) - 1. [Osman et al. \(Cramer\), *JBC* 2021](#osman-et-al-cramer-jbc-2021) - 1. [Run `STAR` alignment, retaining multimappers \(2022-1115-1116\)](#run-star-alignment-retaining-multimappers-2022-1115-1116) - 1. [Alignment metrics for the test run of `STAR` \(multi-hit mode\)](#alignment-metrics-for-the-test-run-of-star-multi-hit-mode) - 1. [Thoughts on the alignment metrics for `STAR` \(multi-hit mode\)](#thoughts-on-the-alignment-metrics-for-star-multi-hit-mode) - 1. [Examine the flags in the `.bam` outfile from the test run of `STAR` \(multi-hit mode\)](#examine-the-flags-in-the-bam-outfile-from-the-test-run-of-star-multi-hit-mode) - 1. [Writing and testing `split_bam_by_species.sh`](#writing-and-testing-split_bam_by_speciessh) - 1. [Use `split_bam_by_species.sh` to get VII and *K. lactis* chromosomes from `.bam` files \(2022-1116\)](#use-split_bam_by_speciessh-to-get-vii-and-k-lactis-chromosomes-from-bam-files-2022-1116) - 1. [Having updated and "function-ized" `split_bam_by_species.sh`, test it \(2022-1117\)](#having-updated-and-function-ized-split_bam_by_speciessh-test-it-2022-1117) - 1. [Writing and testing `exclude_bam_reads-unmapped.sh` \(2022-1117\)](#writing-and-testing-exclude_bam_reads-unmappedsh-2022-1117) - 1. [Testing the updated, corrected `exclude_bam_reads-unmapped.sh` \(2022-1118\)](#testing-the-updated-corrected-exclude_bam_reads-unmappedsh-2022-1118) - 1. [Run the updated, corrected `exclude_bam_reads-unmapped.sh` on the "multi-hit mode" `.bam`](#run-the-updated-corrected-exclude_bam_reads-unmappedsh-on-the-multi-hit-mode-bam) - 1. [Another look at the metrics and flags from the two `STAR` alignment approaches \(2022-1118\)](#another-look-at-the-metrics-and-flags-from-the-two-star-alignment-approaches-2022-1118) - 1. [Some readouts for the 'rna-star' and 'multi-hit-mode' `.bam` files](#some-readouts-for-the-rna-star-and-multi-hit-mode-bam-files) - 1. [Some readouts for the 'rna-star' and 'multi-hit-mode' `.bam` files filtered with `exclude_bam_reads-unmapped.sh`](#some-readouts-for-the-rna-star-and-multi-hit-mode-bam-files-filtered-with-exclude_bam_reads-unmappedsh) - 1. [Rerun `STAR` alignment approaches and metric checks while collecting all tags in `.bam`s](#rerun-star-alignment-approaches-and-metric-checks-while-collecting-all-tags-in-bams) - 1. [Establishing how to call `Trinity` in genome-free and -guided modes](#establishing-how-to-call-trinity-in-genome-free-and--guided-modes) - 1. [How Allison called `Trinity` in genome-guided mode](#how-allison-called-trinity-in-genome-guided-mode) - 1. [Parameters called out by name in McIlwain et al., *G3* 2016](#parameters-called-out-by-name-in-mcilwain-et-al-g3-2016) - 1. [trinityrnaseq-users Google Group post on the parameters in question](#trinityrnaseq-users-google-group-post-on-the-parameters-in-question) - 1. [`Trinity --show_full_usage_info`](#trinity---show_full_usage_info) - 1. [Practice runs of `Trinity` genome-free and -guided, then running `PASA`](#practice-runs-of-trinity-genome-free-and--guided-then-running-pasa) - 1. [The genome-guided run](#the-genome-guided-run) - 1. [The genome-free run](#the-genome-free-run) -1. [Miscellaneous](#miscellaneous) - 1. [Figure out where to put this](#figure-out-where-to-put-this) - 1. [Brief discussion with Toshi about yeast blacklists](#brief-discussion-with-toshi-about-yeast-blacklists) - 1. [Google searches and websites to follow up on](#google-searches-and-websites-to-follow-up-on) - 1. [Determining maximum intron length in *S. cerevisiae* \(2022-1120\)](#determining-maximum-intron-length-in-s-cerevisiae-2022-1120) - 1. [To be continued after the completion of `Trinity` work](#to-be-continued-after-the-completion-of-trinity-work) - 1. [Priorities](#priorities) - 1. [Discussion with Alison on what I should prioritize \(2022-1103\)](#discussion-with-alison-on-what-i-should-prioritize-2022-1103) - 1. [Next steps](#next-steps) - - -
-
- - -## Get another trial run of `Trinity` going -
-Click here to expand - -Just to reacquaint yourself with things... -```bash -#!/bin/bash -#DONTRUN - -grabnode # 1 node, default memory, 1 node, no GPU (default) - -# cd into the work directory -results="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results" -cd "${results}/2022-1101" - -# Make a directory for the results from the previous picardmetrics test (see -#+ above) -mkdir -p exp_picardmetrics -mv 5781_G1_IN_sorted.* picardmetrics.conf exp_picardmetrics/ - -# Make symlinks to the test bams -ln -s \ -"${results}/2022-1021/5781_Q_IP_sorted.bam" \ -"./5781_Q_IP_sorted.bam" - -ln -s \ -"${results}/2022-1021/5781_Q_IP_sorted.chrVII.bam" \ -"./5781_Q_IP_sorted.chrVII.bam" - -# Check that the symlinks are valid -ml SAMtools/1.16.1-GCC-11.2.0 # Load in samtools - -samtools view "./5781_Q_IP_sorted.bam" | head -5 -# HISEQ:1007:HGV5NBCX3:1:1207:3282:88984 99 chrI 147 17 49M = 307 209 TTACCCTGTCTCATTCAACCATACCACTCCCAACTACCATCCATCCCTC GGGGIGIIIIGGIIIIIIIGIGIIIIIIIGIIIIIIIGIIIIIGIIIGI AS:i:75 XS:i:52 XN:i:0 XM:i:3 XO:i:0 XG:i:0 NM:i:3 MD:Z:10C19G3C14 YS:i:90 YT:Z:CP -# HISEQ:1007:HGV5NBCX3:1:1216:10817:56273 99 chrI 159 2 49M = 234 123 ATTCAACTATACCACTCCCAACTACCATCCATCTCTCTACTTACTACCA GGGGIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIGGIIIIIIIGIIIG AS:i:66 XS:i:78 XN:i:0 XM:i:4 XO:i:0 XG:i:0 NM:i:4 MD:Z:7C10G3C10C15 YS:i:80 YT:Z:CP -# HISEQ:1007:HGV5NBCX3:1:1112:7352:13135 99 chrI 226 2 19M1I29M = 433 257 CCAATTACCCATATCCTACTCCACTGCCACTTACCCTACCATTCCCCTA GGGGGGGIIIIIGIIIIIIIIIIIIIGIIIGIGGGGAGGIIIIGIIIII AS:i:73 XS:i:75 XN:i:0 XM:i:2 XO:i:1 XG:i:1 NM:i:3 MD:Z:16A25A5 YS:i:73 YT:Z:CP -# HISEQ:1007:HGV5NBCX3:1:2210:9324:79218 99 chrI 229 11 16M1I32M = 295 115 ATTACCCATATCCTACTCCACTGCCACTTACCCTACCATTACCCTACCA GGGGGGIIIIIIIIIIIIIIIIIIIGGGIIIIIIIIIGIIIIIIIIIIG AS:i:80 XS:i:82 XN:i:0 XM:i:1 XO:i:1 XG:i:1 NM:i:2 MD:Z:13A34 YS:i:90 YT:Z:CP -# HISEQ:1007:HGV5NBCX3:1:1216:10817:56273 147 chrI 234 2 11M1I37M = 159 -123 CCATATCCTACTCCACTGCCACTTACCCTACCATTACCCTACCATCCAC IIGGGIIIIGGGIGGGGIIIIIIGGGIIIGIIIGGGIIGGGIGGGGGGG AS:i:80 XS:i:83 XN:i:0 XM:i:1 XO:i:1 XG:i:1 NM:i:2 MD:Z:8A39 YS:i:66 YT:Z:CP - -samtools view "./5781_Q_IP_sorted.chrVII.bam" | head -5 -# HISEQ:1007:HGV5NBCX3:1:1216:9044:65854 99 chrVII 79 11 1S48M = 252 219 GTCTCTCAACTTACCCTCCATTACCCTACCTCACCACTCGTTACCCTGT AGA. "./submit-Trinity.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -# submit-Trinity.sh -# KA - -module load Trinity/2.10.0-foss-2019b-Python-3.7.4 - -file="5781_Q_IP_sorted.chrVII.bam" # Separately, try 5781_Q_IP_sorted.bam - -Trinity \\ - --genome_guided_bam "\${file}" \\ - --CPU "\${SLURM_CPUS_ON_NODE}" \\ - --max_memory 50G \\ - --SS_lib_type FR \\ - --normalize_max_read_cov 200 \\ - --jaccard_clip \\ - --genome_guided_max_intron 1002 \\ - --min_kmer_cov 2 \\ - --max_reads_per_graph 500000 \\ - --min_glue 2 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200 \\ - --full_cleanup \\ - --output "./trinity_\${file%.bam}" -script - -# Run submit-Trinity.sh on SLURM -sbatch ./submit-Trinity.sh - -# Run time: -#+ - Job started: Thursday, November 3, 2022: 15:26:01 -#+ - Job finished: Thursday, November 3, 2022: 15:37:00 - - -# Clean up Trinity outfiles -pwd -# "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" - -mkdir -p exp_Trinity -mv 5781_* 3299486* trinity_5781_* exp_Trinity/ -``` - - -### Meaning of `Trinity` parameters used -`#DEKHO` `#TODO` *Delete the following and link to the updated version below* -- `--genome_guided_bam`: "If a genome sequence is available, Trinity offers a method whereby reads are first aligned to the genome, partitioned according to locus, followed by *de novo* transcriptome assembly at each locus" ([more info](https://github.com/trinityrnaseq/trinityrnaseq/wiki/Genome-Guided-Trinity-Transcriptome-Assembly)) - - "In this use-case, the genome is only being used as a substrate for grouping overlapping reads into clusters that will then be separately fed into Trinity for *de novo* transcriptome assembly." - - "This is very much *unlike* typical genome-guided approaches (e.g., cufflinks) where aligned reads are stitched into transcript structures and where transcript sequences are reconstructed based on the reference genome sequence." - - "Here, transcripts are reconstructed based on the actual read sequences." -- `--max_memory`: suggested max memory to use by Trinity, where limiting can be enabled -- `--SS_lib_type`: if paired, RF or FR (dUTP method = RF); if single, F or R; this means that left-end reads are on the forward strand and right-end reads are on the reverse strand -- `--normalize_max_read_cov`: defaults to 200, an *in silico* read normalization option - - `#QUESTION` Does it mean that it sets the maximum coverage to 200x? - - `#ANSWER` It means that "poorly covered regions \[are\] unchanged, but reads \[are\] down-sampled in high-coverage regions" (see slide 16 [here](https://biohpc.cornell.edu/lab/doc/Trinity_workshop.pdf)) - - "May end up using just 20% of all reads reducing computational burden with no impact on assembly quality" - - `#NOTE` This normalization method has "mixed reviews" – \[it\] tends to skip whole genes -- `--jaccard_clip`: set if you have paired reads and you expect high gene density with UTR overlap (use FASTQ input file format for reads) - - `#QUESTION`: Our input appears to be a `.bam`; does this affect things? -- `--genome_guided_max_intron`: "...use a maximum intron length that makes most sense given your targeted organism" ([more info](https://github.com/trinityrnaseq/trinityrnaseq/wiki/Genome-Guided-Trinity-Transcriptome-Assembly)) -- `--min_kmer_cov`: with a setting of 2, it means that singleton k-mers will not be included in initial Inchworm contigs (suggested by the Trinity team) -- `--max_reads_per_graph`: maximum number of reads to anchor within a single graph (default: 200000) -- `--min_glue`: min number of reads needed to glue two inchworm contigs together (default: 2) -- `--group_pairs_distance`: maximum length expected between fragment pairs (default: 500; reads outside this distance are treated as single-end) -- `--min_contig_length`: minimum assembled contig length to report (default: 200, must be >= 100) -- `--full_cleanup`: only retain the Trinity fasta file, rename as `${output_dir}.Trinity.fasta` -- `--output`: name of directory for output (will be created if it doesn't already exist) default( your current working directory: `/usr/local/src/trinity_out_dir` note: must include 'trinity' in the name as a safety precaution! ) -
-
-
- - -## Continued reading, studying regarding `Trinity` -Builds on work [performed here](../2022-1025/notebook.md#snippets-etc-from-searching-the-trinity-google-group) - - -### Outstanding, ongoing questions, points, etc. -- When building a transcriptome with Trinity, should we use all `.fastq` (*de novo* assembly) or `.bam` (genome-guided assembly) files in one run? Would doing so build a transcriptome from that combined information? -- What is *minimizing the sum of ranks* [described below](#from-file-s1)? - + Does it mean summing the three metrics of interest—**Transcript Length Distribution Related Factors (when maximized)**, **Unweighted K-mer KL_A_to_M (when minimized)**, and **Unweighted_Pair_F1 (when maximized)**—and then taking the assembly with lowest sum? - + I think that could be it... - + Some kind of transformation (hence, "rank") needs to take place, I think -- For `Bowtie 2` alignment, what does "concordant" and "discordant" mean? - + "A discordant alignment is an alignment where both mates align uniquely, but that does not satisfy the paired-end constraints (`--fr`/`--rf`/`--ff`, `-I`, `-X`)" ([reference](https://www.biostars.org/p/78446/)) - * `--fr`/`--rf`/`--ff`: The upstream/downstream mate orientations for a valid paired-end alignment against the forward reference strand - * `-I`: The minimum fragment length for valid paired-end alignments - * `-X`: The maximum fragment length for valid paired-end alignments -- For `Bowtie 2` alignment, what does `--no-mixed`/"mixed mode" mean? - + If `Bowtie 2` cannot find a paired-end alignment for a pair, by default it will go on to look for unpaired alignments for the constituent mates. This is called "mixed mode." - + To disable mixed mode, set the `--no-mixed` option. - + `Bowtie 2` runs a little faster in `--no-mixed` mode, but will only consider alignment status of pairs *per se*, not individual mates. - + ([reference](https://bowtie-bio.sourceforge.net/bowtie2/manual.shtml#mixed-mode-paired-where-possible-unpaired-otherwise)) -- `Bowtie 2` is not a splice-aware aligner, so why are we using it for RNA-seq work? - + Very little splicing takes place in yeast - + I discussed this with Toshi on 2022-1107 - * Categories of genes that undergo splicing - - Ribosome protein-coding genes - - Housekeeping genes such as ACT1 (Actin) `#TODO Look up how to format genes and proteins for yeast` - - Toshi says that genes with alternative splicing tend to be constitutively active - + These are not well-studied by researchers who tend to be interested in genes that are expressed under different conditions and circumstances - + "...boring" - * Per Toshi, there are no genes with more than one intron - * Average gene size is less than one kb, probably ~800 bp, but Toshi is not certain about that - * Out of some 6000 genes, 283 have introns (nearly 5%) - - `#NOTE` This could make the switch from Bowtie 2 to a splice-aware aligner such as STAR meaningful -- What does "\[a\]lignment stringency was set to minimum of 95% identity across at least 90% of the transcript sequence" as [described below](#from-file-s1)? - + I think it will become clear as I read through the `PASA` documentation -- Could [this use of `Cuffmerge`](#from-supplementary-figure-1) address the [downstream work](../notebook.md#discussion-with-alison-on-what-i-should-prioritize) required for the transcriptome-assembly process? - + More info on [`Cuffmerge` here](http://cole-trapnell-lab.github.io/cufflinks/cuffmerge/) -- `#IMPORTANT` Prior to running `Trinity`—among other things—we need to map the `.fastq` files to the combined reference (*S. cerevisiae*, *K. lactis*, and 20 S) and then filter out those that are assigned to *K. lactis* and 20 S - + Then, we need to convert the `.bam` files back to `.fastq` files - + `#QUESTION` But what about reads that are unmapped? - * Option #1: ***Do include them*** with reads that mapped to *S. cerevisiae* in the *de novo* transcriptome assembly - * Option #2: ***Do not include them*** with reads that mapped to *S. cerevisiae* in the *de novo* transcriptome assembly - + And what about the parameters for calling `Bowtie2`? Here is how we're currently calling it: - - -### In-progress steps of the pipeline -0. Generate downsampled paired-end `.fastq` files for use in tests of preprocessing and *de novo* transcriptome assembly -1. Run some kind of quality check on the `.fastq` files, e.g., `FastqQC` or `fastp`, paying attention to - - adapter content - - k-mer content - - other metrics? `#TODO` -2. Filter out adapters using, e.g., `Trimmomatic` or `Trim Galore`, which has been shown to outperform `Trimmomatic` -3. Map the `.fastq` files to the combined reference (*S. cerevisiae*, *K. lactis*, and 20 S) with `Bowtie 2` - - `Bowtie 2` - + Retain unmapped reads in the resulting `.bam` files - * (or write the unmapped reads to a separate `.bam` or `.fastq` file) - * `#DONE` Get rid of `--no-unal` - + I don't think we should worry about concordance with the initial alignments - * Thus, perhaps we should get rid of the flags that control for concordance - * ~~Actually, we can keep *some* of the flags because they'll be retained in one form or another~~ - - ~~If they're properly paired but not concordant, they'll be written to `"${infiles[0]%_R1.fastq}.unaligned"` via `--un-conc-gz`~~ - - If they're not properly paired, we won't be able to evaluate concordance, but they'll be retained in the sense that they'll be written to the `.bam` outfile because we're no longer calling `--no-unal` - - `#DONE` Actually, go ahead and get rid of `--no-discordant` because we don't want them written to a `.fastq` file: we want them written to the `.bam` outfile with mapped coordinates (that we can later use for filtering) - - `#DONE` Go ahead and get rid of `--no-overlap` too for the same reasons - - `#DONE` Same with `--no-dovetail` - + I don't think we should worry about unpaired alignments for paired reads just yet either; just keep and use them all, if possible - * `#DONE` Get rid of `--no-mixed` - + `#TODO` Get rid of `--trim5`; not sure why we bother with it in the first place - + `#MAYBE` Get rid of `--al-conc-gz` because it writes the alignments to a `.fastq.gz`; actually, I think they're going into the `.bam` too... hold off on this - - `STAR` - + Map the `.fastq` files to the combined reference with `STAR` - + Can use [these parameters](https://groups.google.com/g/rna-star/c/hQeHTBbkc0c) -4. Filter `.bam` files to remove reads that are assigned to *K. lactis* and 20 S—and `#QUESTION` *S. cerevisiae* chrM as well? `#TODO` - - `#ANSWER` Let's go with 'yes' -5. Convert the `.bam` files back to `.fastq` files - - `#TODO` Determine the handling of unmapped reads: If we decide we want to include them in the transcriptome assembly, then they need to be in the resulting `.fastq` files -6. Perform a quality check of the new `.fastq` files using the same program, paying special attention to the same metrics -7. `#OPTIONAL` Based on the results of the quality check, trim adapters and low quality bases from `.fastq` files -7. Remove erroneous k-mers with `rCorrector` `#TODO` Look into this -8. Discard read pairs in which at least one of the reads is "unfixable" -9. `#MAYBE` Map trimmed reads to a blacklist to remove unwanted (rRNA reads; OPTIONAL) `#TODO Check with Alison on whether or not we would want to do this` - + ["Reads mapped to blacklisted regions were removed (i.e., mitochondrial genome, ribosomal genes in chromosome 12, and subtelomeres)."](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8407396/) (do `cmd f` for *blacklist*) - + If your RNA-seq libraries are built with a stranded protocol (see the link) `#QUESTION What was I typing up and referring to here?` `#TODO Come back to the best practices document` - + Spoke with Toshi briefly about the existence of and use of blacklists in yeast NGS work; [details below](#brief-discussion-with-toshi-about-yeast-blacklists) -10. ... - - -### In-progress list of packages for the pipeline -- Ongoing list packages for a `conda env` for doing the transcriptome-assembly work: - + `Trinity` - * [`conda`](https://anaconda.org/bioconda/trinity) - * [`Repository`](https://github.com/trinityrnaseq/trinityrnaseq/) - * [`Documentation`](https://github.com/trinityrnaseq/trinityrnaseq/wiki) - + `TrimGalore` - * [`conda`](https://anaconda.org/bioconda/trim-galore) - * [`Home`](https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/) - * [`Repository`](https://github.com/FelixKrueger/TrimGalore) - * [`Documentation`](https://github.com/FelixKrueger/TrimGalore/blob/master/Docs/Trim_Galore_User_Guide.md) - + `rCorrector` Use to remove spurious k-mers - * `#TODO` Follow up on this - + `DETONATE` Would be used for validation - * [`Vignette`](https://deweylab.biostat.wisc.edu/detonate/vignette.html) - + `BUSCO` Would be used for validation - + `FastQC` `#DECISION fastp or FastQC?` - + `fastp` `#DECISION fastp or FastQC?` - * [`Repo and documentation`](https://github.com/OpenGene/fastp) - * [`conda`](https://anaconda.org/bioconda/fastp) - + `pasa` Would be used for mapping Trinity sequences to the reference - * `#TODO` Follow up on this - + `Transrate` `#MAYBE` Would be used for validation - * [`Documentation`](http://hibberdlab.com/transrate/) - * [`Repository`](https://github.com/blahah/transrate/) - * [`conda`](https://anaconda.org/bioconda/transrate) - + etc. -- Related resource: [Lessons on using Trinity from Brian Haas](https://bioinformaticsdotca.github.io/rnaseq_2018) - - -### References for the experimental design/pipeline -- [McIlwain et al. (Hittinger), *G3* 2016](https://academic.oup.com/g3journal/article/6/6/1757/6029942) ([notes below](#mcilwain-et-al-hittinger-g3-2016)) - + [Notes](#mcilwain-et-al-hittinger-g3-2016) -- [Best Practices for *De Novo* Transcriptome Assembly with Trinity](https://informatics.fas.harvard.edu/best-practices-for-de-novo-transcriptome-assembly-with-trinity.html) -- [Blevins et al. (Mar Alba), bioRxiv 2019-0313](https://www.biorxiv.org/content/10.1101/575837v1.full) - + [Notes](#blevins-et-al-mar-alba-biorxiv-2019-0313) -- `PASA` materials from Brian Haas - + [Build a Comprehensive Transcriptome Database Using Genome-Guided and *De Novo* RNA-seq Assembly](https://github.com/PASApipeline/PASApipeline/wiki/PASA_comprehensive_db) - * Recommended by author/maintainer of `Trinity` to look into this (see [below](#more-thoughts-on-multimappers-2022-1109-1110)) - * [Notes](#build-a-comprehensive-transcriptome-database) - + [Leveraging RNA-seq by the `PASA` Pipeline](https://github.com/PASApipeline/PASApipeline/wiki/PASA_RNAseq) - * Necessary to understand and leverage the [above reference](https://github.com/PASApipeline/PASApipeline/wiki/PASA_comprehensive_db) recommended by Brian Haas - * [Notes](#leveraging-rna-seq-by-the-pasa-pipeline) - + [Running the `PASA` Alignment Assembly Pipeline](https://github.com/PASApipeline/PASApipeline/wiki/PASA_alignment_assembly) - * Necessary to understand and leverage the above two references - - [Build a Comprehensive Transcriptome Database Using Genome-Guided and *De Novo* RNA-seq Assembly](https://github.com/PASApipeline/PASApipeline/wiki/PASA_comprehensive_db) - - [Leveraging RNA-seq by the `PASA` Pipeline](https://github.com/PASApipeline/PASApipeline/wiki/PASA_RNAseq) - * [Notes](#running-the-pasa-alignment-assembly-pipeline) - + [Introduction to `PASA`](https://github.com/PASApipeline/PASApipeline/wiki#introduction) - * Necessary to understand and leverage the above three references - * [Notes](#introduction-to-pasa) - -`#TODO For the in-progress steps below, describe what material is from what reference above` - - -### Notes from the references listed above -`#DEKHO` - -#### McIlwain et al. (Hittinger), *G3* 2016 -
-Click here to expand - -[Link to paper](https://academic.oup.com/g3journal/article/6/6/1757/6029942) - - -##### From *Materials and Methods* -... - -We validated the predicted protein coding genes of Y22-3 using: 1) single-end RNA-seq data collected from four growth phases of Y22-3 grown on YP media containing 60 g/L dextrose and 30 g/L xylose (YPDX, equivalent sugar concentrations that mimic ACSH made with 6% glucan loading), 2) an optimized (Figure S1) *de novo* transcriptome assembled by Trinity (Grabherr et al. 2011) using paired-end RNA-seq data from clones derived from Y22-3 that were grown aerobically or anaerobically from four to six growth phases on YPDX and ACSH, and 3) proteomic data collected similarly to previous nanoflow liquid.... - - -##### From [*File S1*](https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/g3journal/6/6/10.1534_g3.116.029389/5/029389_files1.pdf?Expires=1670618915&Signature=4DEEu1wmL~iHD~Hpq-nTS9dJzWOHBV~jvWPaFFY-df6LV7nLBK45mN5h7MfOqxC5yDY8f8jpz9jcgsnBH6Q0a3NCotRUwvPcyQzo9VIX8fy4VSj7nibf9enwo-tyw5u4vQNtZXU4kjRgJZddXmvRE~73LEJdaFYQxBiRTNvskf5lCvmw64xLDeJPW8OGMVixRphDasc5zo~DNSQyNsbPxaZQCd4nNlNx2OMIc~RadavZBm-ZMPB81bPr4~oFeHEVr6WeLRtj0aJEVotV~PxzZYvAqleqMhLJUsuorvqVuz1sD4K~mJDcvweCBacBkAu5fgiBGAsdrTOoQ4RYmuKFNw__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA) -***De novo* transcriptome assembly (transcriptome method):** -¶1 -To describe transcriptional activity of Y22-3 over a wide range of conditions, nearly 1.5 billion (1,433,309,474) paired-end Illumina RNA-seq reads from the JGI dataset were assembled *de novo* to yield a generalized transcriptome model (Parreiras et al. 2014). - -To remove both low-quality and nucleotide composition-biased parts of the sequencing reads, the Trimmomatic software (Bolger et al. 2014) was applied to pre-process the reads with the following rules: 1) remove the first 12 bp from 5’ end, 2) remove any number of bp from 3’ end that have the average quality score < 30 in a 3-bp sliding window, and 3) keep the trimmed read if 36 or more bp are left. - -¶2 -Transcriptome assembly was performed using the Trinity pipeline (Grabherr et al. 2011). The pool of reads was normalized to a target coverage of 50 using Trinity’s *in silico* normalization routine. - -Transcriptome assembly with default parameters produced numerous artificial fusion transcripts. To optimize the assembly parameters for our particular case, extensive parameter scanning and optimization were performed by generating 270 *de novo* assemblies that combined 10 levels of minimal k-mer coverage (Inchworm stage of the Trinity), three levels of minimal glue, three levels of minimal iso ratio, and three levels of glue factor (Chrysalis stage). Optimization of the Butterfly-stage parameters was not recommended by the Trinity developers. - -¶3 -Selection of the best assembly was performed with the aid of the [DETONATE](https://deweylab.biostat.wisc.edu/detonate/) [package](https://github.com/deweylab/detonate) [(Li et al. 2014)](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-014-0553-5), using both the RSEM-EVAL and REF-EVAL pipelines. - -Our preliminary applications of DETONATE to smaller-size assemblies, combined with visual assessment of the assembly quality after subsequent mapping to the genome sequence, revealed that 3 out of 47 output statistics generated by the DETONATE—**Transcript Length Distribution Related Factors (when maximized)**, **Unweighted K-mer KL_A_to_M (when minimized)**, and **Unweighted_Pair_F1 (when maximized)**—are better representatives of the overall assembly quality for our transcriptome. We selected the three candidate assemblies with top scores according to each of the three statistics. The final assembly was selected by [*minimizing the sum of ranks*](#outstanding-ongoing-questions); this assembly belonged to the top 5% of assemblies for all three ranked lists. - -The following advanced Trinity parameters were used to generate the optimized transcriptome assembly: **min_kmer_cov 32 (Inchworm stage), min_glue 4, min_iso_ratio 0.01, and glue_factor 0.01 (Chrysalis stage)**. - -The transcripts from the optimized transcriptome assembly were mapped onto the Y22-3 genome sequence via **the [first stage](https://github.com/PASApipeline/PASApipeline/wiki/PASA_alignment_assembly) of the [PASA pipeline](https://github.com/PASApipeline/PASApipeline) [(Haas et al. 2003)](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC206470/)** with blat and gmap aligners and the following options: `--MAX_INTRON_LENGTH 2000` and `--transcribed_is_aligned_orient`. Alignment stringency was set to minimum of 95% identity across at least 90% of the transcript sequence. - -Visual comparison of the mapping results derived from the optimized and default-parameter assemblies [(Figure S1)](https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/g3journal/6/6/10.1534_g3.116.029389/5/029389_figures1.pdf?Expires=1670618835&Signature=EYS-mn5bLPlI~Wa3u7B8J8J-2Vm1yZ08An4f35VKyef4qyT~T1LaBSdQkKJtKbYfggQciXpi30thpgSUXdx~S3I9MHUyUBpZFr-JGC4YdMg1c-IdMqWBbczfmPdinQx9pFMrlqty9lHf1oxA5Jmc4vbAdJVoJU3AHt4kIRChviV8PyelyFsFQkIYNRIpLclSVODM180ebZ~jiIMquHHdA3fbS4z~p7lLqMCAmCdnMmp6-dJbpCt9JSz10BSztduUZSjfbOoF9sKMxhTuH2rUHEHH-ONMu3NeRg0YJcR~rcJV4Pnkaw3QY4Xx~-L3G--IzRoGTkLfkNqd7WYIUHZPJA__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA) revealed that cases of artificial both-strand coverage by predicted transcripts, which were abundant in the default assembly, were essentially eliminated in the optimized assembly, without sacrificing sensitivity (seen as coverage of the genomic features predicted at DNA level). - -... -
- - - -#### *TBD*, Best Practices for *De Novo* Transcriptome Assembly..., Harvard FAS Informatics 2021-0305 -... `#TODO` `#DEKHO` - - -#### Blevins et al. (Mar Alba), bioRxiv 2019-0313 -
-Click here to expand - -[Link to paper](https://www.biorxiv.org/content/10.1101/575837v1.full); this is the study Alison referenced for the parameters [used here](#get-another-trial-run-of-trinity-going) - - -##### From *Results* -**Assembling novel transcripts from 11 yeast species** -¶1 -We selected 10 species from the Saccharomycotina subphylum, including the model organism *S. cerevisiae*, as well as a more distant outgroup species (*Schizosaccharomyces pombe*), due to their evolutionary history as well as their inclusion in other relevant studies (Figure 1, Supplementary Table 1). All 11 species of yeast were grown in rich media, henceforth referred to as ‘normal’ conditions, as well as in oxidative stress conditions induced by adding hydrogen peroxide ... to the rich media, henceforth referred to as 'stress.' - -¶2 -We performed high throughput RNA sequencing (RNA-seq) in normal and stress conditions for the 11 species, and [assembled *de novo* transcriptomes using Trinity (Grabherr et al. 2013)](#from-methods). We combined the set of *de novo* assembled transcripts with the reference annotations to generate an inclusive and non-redundant set of transcripts for each species (Supplementary Figure 1). Our de novo assemblies contained an average of 770 novel (unannotated) transcripts for each species studied (Supplementary Table 2). - - -##### From *Supplementary Figure 1* -**Flow chart of our RNAseq analysis pipeline.** -We began our analysis with raw RNA-seq sequencing fastq files for each of the species both conditions. - -Adapters and low-quality reads were removed with `Trimmomatic`, then `FastQC` was used to do a subsequent quality assessment. - -The high-quality reads were then mapped to the reference genome with `Bowtie2`. - -`Trinity` was run in reference-free mode, so the assembled transcripts it produces are lacking genomic coordinates. - -For this reason, we used `GMAP` to map where the assembled transcripts belong on the reference genome. - -We then [used `Cuffmerge` to compare and combine the reference annotations with our *de novo* assembly](#outstanding-ongoing-questions). - -Nucleotide sequences were extracted for each transcript using the tool `gffread` from the `Cufflinks` suite, and BLAST databases were created for each species using the complete transcriptome (novel transcripts & annotated -transcripts). - -Each transcript was used as a query in `BLAST` searches against all `BLAST` databases (the transcriptomes of all 11 species) as well as the proteomes of 35 distant non-Ascomycota species. - -`Salmon` was used to quantify the expression of each transcript in both conditions. - - -##### From *Methods* -**Processing of RNA-seq data** -We trimmed the adapters and low quality bases with Trimmomatic (Bolger et al. 2014) with the following parameters: -```txt -ILLUMINACLIP:$illumina_adapters:2:33:20:2:true \ -LEADING:36 \ -TRAILING:32 \ -SLIDINGWINDOW:4:30 \ -MINLEN:35 -``` -We then used Bowtie2 version 2.2.3 with default parameters (Langmead and Salzberg 2012) to map the trimmed RNA-seq reads to the reference genome. After mapping the reads, we discarded all reads with > 2 mismatches as well as unpaired reads. - -**Assembly of transcriptomes** -¶1 -We used Trinity in genome-guided BAM mode (Grabherr et al. 2013) to perform a *de novo* assembly using the following parameters: - -¶2 -```txt ---normalize_max_read_cov 200 \ ---jaccard_clip \ ---genome_guided_max_intron 1002 \ ---min_kmer_cov 2 \ ---max_reads_per_graph 300000 \ ---min_glue 5 \ ---group_pairs_distance 300 \ ---min_contig_length 200 -``` - -¶3 -In this mode, `Trinity` works with mapped reads, but it does not use the reference genome directly to reconstruct the transcripts. - -We used `Transrate` (Smith-Unna et al. 2016) to evaluate the quality of each assembly and refined the parameters of Trinity to achieve a high-quality de novo assembly. - -As `Trinity` does not use the reference genome directly to assemble transfrags, we used GMAP (Wu and Watanabe 2005) to map the assembled transcripts back to the reference genome. We used Cuffmerge from the Cufflinks suite version 2.2.0 (Trapnell et al. 2012) to combine the de novo assemblies from normal and stress conditions with the reference transcriptome. When we combined novel and annotated transcripts into a comprehensive transcriptome, novel transcripts from our assembly which overlapped the reference annotations were considered redundant and were excluded from most of the analysis; however, these transcripts were still included in the BLAST database during homology searches. -
- - -#### Haas, Build a Comprehensive Transcriptome Database..., GitHub *TBD* -- ...Using Genome-Guided and *De Novo* RNA-seq Assembly -- [Link to the resource](https://github.com/PASApipeline/PASApipeline/wiki/PASA_comprehensive_db), which is recommended by the author/maintainer of `Trinity`, Brian Haas (see [below](#more-thoughts-on-multimappers-2022-1109-1110)) - - -##### Build a Comprehensive Transcriptome Database Using Genome-Guided and *De Novo* RNA-seq Assembly -*Copied from the link with my notes and questions interspersed (also edited for grammar, style):* - -Depending on the genome and transcriptome samples under study, the genome may provide a limited view into the transcriptome. Our comprehensive transcriptome database-generating pipeline aims to: -- Capture transcripts for genes missing from the genome (difficult-to-sequence regions, novel transcripts existing in the sample, etc) -- Capture transcripts that align partially to the genome with exons falling into sequencing gaps -- Capture transcripts that cannot otherwise be represented properly according to the reference genome due to karyotype differences (e.g., genome translocations) - -The transcripts are identified and included along with the `PASA` assemblies yielding a more comprehensive transcriptome database to be used for downstream investigations into expressed gene content and differential expression analyses. - -Our system for building the comprehensive transcriptome database requires multiple sources of inputs: -1. [`Trinity` *de novo*](https://github.com/trinityrnaseq/trinityrnaseq/wiki) RNA-seq assemblies (e.g., `Trinity.fasta`), -2. [`Trinity` genome-guided](https://github.com/trinityrnaseq/trinityrnaseq/wiki/Genome-Guided-Trinity-Transcriptome-Assembly) RNA-seq assemblies (e.g., `Trinity.GG.fasta`), -3. and (optionally) [`Cufflinks`](https://github.com/cole-trapnell-lab/cufflinks) or [`StringTie`](https://ccb.jhu.edu/software/stringtie/) transcript structures (e.g., `cufflinks.gtf`). - -```txt -Notes from me: - -#QUESTION Cufflinks/Tophat is outdated right? - -#ANSWER Yes. See, e.g., www.biostars.org/p/215220/, specifically this from Devon Ryan: - "Regarding cufflinks, unless you need to find novel isoforms/genes then don't use it. - If you do need novel isoforms/genes, then use stringTie rather than cufflinks." - -Back to the text proper: -``` - -When applying `Trinity` to RNA-seq samples derived from microbial eukaryotes, using either genome-free or genome-guided *de novo* assembly, be sure to use the `--jaccard_clip` parameter to reduce the occurrence of falsely-fused genome-neighboring transcripts. Also, only include `Cufflinks` transcripts if applying the approach to expansive genomes of animals such as mouse or human, and exclude `Cufflinks` from application to compact microbial eukaryotic genomes. - -After generating the inputs according to their separate procedures linked above, you can run `PASA` according to the following steps: -1. Concatenate the `Trinity.fasta` and `Trinity.GG.fasta` files into a single `transcripts.fasta` file: -```bash -#!/bin/bash -#DONTRUN - -cat Trinity.fasta Trinity.GG.fasta > transcripts.fasta -``` -2. Create a file containing the list of transcript accessions that correspond to the `Trinity` *de novo* assembly (full *de novo*, not genome-guided): -```bash -#!/bin/bash -#DONTRUN - -${PASA_HOME}/misc_utilities/accession_extractor.pl < Trinity.fasta > tdn.accs -``` -3. Run `PASA` using RNA-seq-related options as described in the section above ([`GitHub` link](https://github.com/PASApipeline/PASApipeline/wiki/PASA_RNAseq), [my notes]()), but include the parameter setting `--TDN tdn.accs`. To (optionally) include `Cufflinks`-generated transcript structures, further include the parameter setting `--cufflinks_gtf cufflinks.gtf`. Note, `Cufflinks` may not be appropriate for gene-dense targets, such as in fungi; `Cufflinks` excels when applied to vertebrate genomes, so best to include when applying to mouse or human. -```txt -Note from me: - -When Brias Haas writes "as described in the section above," he is referring the material at this link: -https://github.com/PASApipeline/PASApipeline/wiki/PASA_RNAseq - -Back to the main text: -``` -4. After completing the `PASA` alignment assembly, generate the comprehensive transcriptome database via: -```bash -#!/bin/bash -#DONTRUN - -${PASA_HOME}/scripts/build_comprehensive_transcriptome.dbi \ - -c alignAssembly.config \ - -t transcripts.fasta \ - --min_per_ID 95 \ - --min_per_aligned 30 -``` -This examines the `Trinity` *de novo* assemblies (specified by the `--TDN` parameter in the `PASA` run). The following groupings are performed: -- Those TDN accessions mapping at above the `--min_per_ID` and `--min_per_aligned` values but otherwise failing the stringent alignment validation requirements (splice sites, contiguity, etc) are assigned to PASA assembly clusters (genes) based on exon overlap -- Those not mapping to `PASA` assemblies retain their gene identifier assigned as the Trinity component -- Likewise, those TDN entries that map poorly to the genome (below `--min_per_id` and `--min_per_aligned` criteria) or do not map to the genome at all are assigned gene identifiers based on the `Trinity` component identifier -- `PASA` assemblies and those TDN entries that were not included in `PASA` assemblies (not mapping or invalid alignments) are reported as a single data set - -The resulting data files should include: -```txt -compreh_init_build/compreh_init_build.fasta the transcript sequences -compreh_init_build/compreh_init_build.geneToTrans_mapping the gene/transcript mapping file - (for use with RSEM, Trinotate, - other tools) -compreh_init_build/compreh_init_build.bed transcript structures in bed - format -compreh_init_build/compreh_init_build.gff3 transcript structures in gff3 - format -compreh_init_build/compreh_init_build.details classifications of transcripts - according to genome mapping status -``` -The classifications include: -```txt -pasa PASA alignment assembly -InvalidQualityAlignment_YES_PASAmap invalid alignment that maps at percent identity and - alignment length requirement, and overlaps a PASA exon -InvalidQualityAlignment_NO_PASAmap same as above, but doesn't map to a PASA exon -PoorAlignment_TreatUnmapped invalid alignment that does not meet percent identity - and length requirements (potentially missing from - genome) -TDN_noMap no alignment to the genome reported (missing from the - genome) -``` - - -#### Leveraging RNA-seq by the `PASA` Pipeline -[Link to the resource](https://github.com/PASApipeline/PASApipeline/wiki/PASA_RNAseq), which is needed to understand and on the [above material](#build-a-comprehensive-transcriptome-database) - - -##### Leveraging RNA-seq by the `PASA` Pipeline -*Copied from the link with my notes and questions interspersed (also edited for grammar, style):* - -Illumina RNA-seq is quickly revolutionizing gene discovery and gene structure annotation in eukaryotes. Recent enhancements to the `PASA` pipeline, including advancements in RNA-seq *de novo* assembly, now enable it to make use of these data for gene structure annotation. It is now relatively straightforward to generate strand-specific RNA-seq data via Illumina. Given the great utility of strand-specific data in differentiating between sense and antisense transcription, plus given the great depth of transcriptome sequencing coverage and the great prevalence of antisense transcription, strand-specific RNA-seq data is highly preferred by the `PASA` pipeline. `PASA` can still be used quite effectively in the case of non-strand-specific RNA-seq, but the execution is quite different (see below). The dUTP strand-specific RNA-seq method by [Parkhomchuk et al., *NAR* 2009](http://www.ncbi.nlm.nih.gov/pubmed/19620212) is recommended. You can buy an off-the-shelf kit for doing stranded RNA-seq from Illumina such as the TruSeq stranded mRNA kit. For a comparison of strand-specific methods, see [Levin et al., *Nat Methods* 2010](https://pubmed.ncbi.nlm.nih.gov/20711195/). - -The procedure for leveraging RNA-seq in the `PASA` pipeline is very straightforward. First, assemble the RNA-seq data using our new `Trinity` *de novo* RNA-seq assembly software. The RNA-seq assembly process can be performed in either a genome-guided (recommended) or genome-free way. Documentation for `Trinity` RNA-seq assembly (genome-guided or genome-free) is provided at http://trinityrnaseq.github.io. Instructions for assembly of strand-specific and non-strand-specific RNA-seq are provided. - - -###### Strand-specific RNA-seq -In the case of strand-specific RNA-seq, run `PASA` with the `Trinity` transcript assemblies as input, including the `--transcribed_is_aligned_orient` parameter, to indicate that the `Trinity` transcripts were directionally assembled: -```bash -#!/bin/bash -#DONTRUN - -${PASAHOME}/Launch_PASA_pipeline.pl \ - -c alignAssembly.config \ - -C \ - -R -g genome_sample.fasta \ - --ALIGNERS blat,gmap \ - -t Trinity.fasta \ - --transcribed_is_aligned_orient -``` - -The above will cluster and assemble alignments with minimal overlap. If your gene density is high and you expect transcripts from neighboring genes to often overlap in their UTR regions, you can perform more stringent clustering of alignments like so: -```bash -#!/bin/bash -#DONTRUN - -${PASAHOME}/Launch_PASA_pipeline.pl \ - -c alignAssembly.config \ - -C -R \ - -g genome_sample.fasta \ - --ALIGNERS blat,gmap \ - -t Trinity.fasta \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 -``` - -Also, as an alternative, if you have existing gene structure annotations that are reasonably accurate, you can cluster Trinity assemblies by locus (annotation-informed clustering) and further augment full-length transcript reconstruction from overlapping inchworm assemblies like so, with the alternative run command: -```bash -#!/bin/bash -#DONTRUN - -${PASAHOME}/Launch_PASA_pipeline.pl \ - -c alignAssembly.config \ - -C -R \ - -g genome_sample.fasta \ - --ALIGNERS blat,gmap \ - -t Trinity.fasta \ - --transcribed_is_aligned_orient \ - -L --annots_gff3 coding_gene_annotations.gff3 \ - --gene_overlap 50.0 -``` - - -###### Non-Strand-specific RNA-seq -In the case of non-strand-specific RNA-seq, simply exclude the `--transcribed_is_aligned_orient` parameter and run like so: -```bash -#!/bin/bash -#DONTRUN - -${PASAHOME}/Launch_PASA_pipeline.pl \ - -c alignAssembly.config \ - -C -R \ - -g genome_sample.fasta \ - -t Trinity.fasta \ - --ALIGNERS blat,gmap -``` - - -#### Running the `PASA` Alignment Assembly Pipeline -[Link to the resource](https://github.com/PASApipeline/PASApipeline/wiki/PASA_alignment_assembly) - - -##### Running the Alignment Assembly Pipeline -*Copied from the link with my notes and questions interspersed (also edited for grammar, style):* - -As input to the command-line driven `PASA` pipeline, we need only two (potentially three) input files: -- The genome sequence in a multiFasta file (i.e., `genome.fasta`) -- The transcript sequences in a multiFasta file (ie. transcripts.fasta) -- Optional: a file containing the list of accessions corresponding to full-length cDNAs (ie. FL_accs.txt) - - -###### Step A: Cleaning the transcript sequences (optional) -Have each of these files in the same 'working' directory. Then, run the `seqclean` utility on you transcripts like so: -```bash -#!/bin/bash -#DONTRUN - -${PASAHOME}/bin/seqclean transcripts.fasta -``` -If you have a database of vector sequences (i.e., `UniVec`), you can screen for vector as part of the cleaning process by running the following instead: -```bash -#!/bin/bash -#DONTRUN - -${PASAHOME}/bin/seqclean transcripts.fasta -v /path/to/your/vectors.fasta -``` -This will generate several output files including `transcripts.fasta.cln` and `transcripts.fasta.clean`. Both of these can be used as inputs to `PASA`. - - -###### Step B: Walking Thru A Complete Example Using the Provided Sample Data -Sample inputs are provided in the `${PASAHOME}/sample_data` directory. We'll use these inputs to demonstrate the breadth of the software application, including using sample DATA ADAPTERs to import existing gene annotations into the database, and tentative structural updates out. - -The `PASA` pipeline requires separate configuration files for the alignment assembly and later annotation comparison steps, and these are configured separately for each run of the `PASA` pipeline, setting parameters to be used by the various tools and processes executed within the `PASA` pipeline. Configuration file templates are provided as `${PASAHOME}/pasa_conf/pasa.alignAssembly.Template.txt` and `${PASAHOME}/pasa_conf/pasa.annotationCompare.Template.txt`, and these will be further described when used below. - -The next steps explain the current contents of the sample_data directory. You do NOT need to redo these operations: -- I've copied the `${PASAHOME}/pasa_conf/pasa.alignAssembly.Template.txt` to `alignAssembly.config` and edited the `PASA` database name to `/tmp/sample_mydb_pasa` - + Note, if you set the database name to a fully qualified path (i.e., `/path/to/my/database.sqlite`), it will use SQLite for the relational database type - + If you simply specify a database name (i.e., `my_pasa_db`), it will default to using MySQL -- My required input files exist as: `genome_sample.fasta`, `all_transcripts.fasta`, and since I have some full-length cDNAs, I'm including `FL_accs.txt` to identify these as such -- I already ran `seqclean` to generate files: `all_transcripts.fasta.clean` and `all_transcripts.fasta.cln` - -The following steps, you must execute in order to demonstrate the software. (The impatient can execute the entire pipeline below by running `./run_sample_pipeline.pl`. If this is your first time through, it helps to walk through the steps below instead.) - -**Transcript alignments followed by alignment assembly** -Run the PASA alignment assembly pipeline like so: -```bash -#!/bin/bash -#DONTRUN - -${PASAHOME}/Launch_PASA_pipeline.pl \ - -c alignAssembly.config \ - -C \ - -R \ - -g genome_sample.fasta \ - -t all_transcripts.fasta.clean \ - -T \ - -u all_transcripts.fasta \ - -f FL_accs.txt \ - --ALIGNERS blat,gmap,minimap2 \ - --CPU 2 -``` - -The `--ALIGNERS` can take values `gmap`, `blat`, `minimap2`, or some combination (i.e., `gmap,blat`), in which case both aligners will be executed in parallel. The CPU setting determines the number of threads to be split among each process. This is passed on to `GMAP` to indicate the thread count. In the case of `BLAT`, the new `pblat` utility is used for parallel processing. - -This executes the following operations, generating the corresponding output files: -- aligns the `all_transcripts.fasta` file to `genome_sample.fasta` using the specified alignment tools; files generated include... - + `sample_mydb_pasa.validated_transcripts.gff3`, `.gtf`, `.bed`: the valid alignments - + `sample_mydb_pasa.failed_gmap_alignments.gff3`, `.gtf`, `.bed`: the alignments that fail validation test - + `alignment.validations.output`: tab-delimited format describing the alignment validation results -- The valid alignments are clustered into piles based on genome alignment position, and piles are assembled using the `PASA` alignment assembler; files generated include... - + `sample_mydb_pasa.assemblies.fasta`: the PASA assemblies in FASTA format - + `sample_mydb_pasa.pasa_assemblies.gff3`, `.gtf`, `.bed`: the PASA assembly structures - + `sample_mydb_pasa.pasa_alignment_assembly_building.ascii_illustrations.out`: descriptions of alignment assemblies and how they were constructed from the underlying transcript alignments - + `sample_mydb_pasa.pasa_assemblies_described.txt`: tab-delimited format describing the contents of the PASA assemblies, including the identity of those transcripts that were assembled into the corresponding structure - - -#### Introduction to `PASA` -[Link to the resource](https://github.com/PASApipeline/PASApipeline/wiki#introduction) - -*Copied from the link with my notes and questions interspersed (also edited for grammar, style):* -¶1 -... - -¶2 -Functions of `PASA` include: -... - -¶3 -`PASA` is composed of a pipeline of utilities that perform the following ordered set of tasks: -- Clean the transcripts - + The `seqclean` utility, developed by the TIGR Gene Index group, is used to identify evidence of polyadenylation and strip the poly-A, trim vector, and discard low quality sequences -- Map and align transcripts to the genome - + `GMAP` and/or `BLAT` is used to map and align the transcripts to the genome -- Validate nearly perfect alignments - + `PASA` utilizes only near perfect alignments. These alignments are required to align with a specified percent identity (typically 95%) along a specified percent of the transcript length (typically 90%) - + Each alignment is required to have consensus splice sites at all inferred intron boundaries, including (GT/GC donor with an AG acceptor, or the AT-AC U12-type dinucleotide pairs) -- Maximal assembly of spliced alignments - + The valid transcript alignments are clustered based on genome mapping location and assembled into gene structures that include the maximal number of compatible transcript alignments - + Compatible alignments are those that have identical gene structures in their region of overlap - + The products are termed `PASA` maximal alignment assemblies - + Those assemblies that contain at least one full-length cDNA are termed FL-assemblies; the rest are non-FL-assembles -- Grouping alternatively spliced isoforms - + Alignment assemblies that map to the same genomic locus, significantly overlap, and are transcribed on the same strand, are grouped into clusters of assemblies -- Automatic Genome Annotation - + Given a set of existing gene structure annotations, which may include the latest annotation for a given genome or the results of a single ab-initio gene finder, a comparison to the `PASA` alignment assemblies is performed - * Each alignment assembly is assigned a status identifier based on the results of the annotation comparison - * The status identifier indicates whether or not the update is sanctioned as likely to improve the annotation, and the type of update that the assembly provides - * There are over 40 different status identifiers (actually, about 20 since half correspond to FL-assemblies and the other half to non-FL-assemblies) - + In the absence of any preexisting gene annotations, novel genes and alternative splicing isoforms of novel genes can be modeled - + At any time, regardless of any existing annotations, users can obtain candidate gene structures based on the longest open reading frame (ORF) found within each `PASA` alignment assembly - * The output includes a `.fasta` file for the proteins and a `.gff3` file describing the gene structures - * This is useful when applied to a previously uncharacterized genome sequence, allowing one to rapidly obtaining a set of candidate gene structures for training various *ab-intio* gene prediction programs - * In the case of RNA-seq, `PASA` can generate a full transcriptome-based genome annotation, identifying likely coding and non-coding transcripts - - -##### `PASA` in the Context of a Complete Eukaryotic Annotation Pipeline -[Link to the resource](https://github.com/PASApipeline/PASApipeline/wiki#pasa-in-the-context-of-a-complete-eukaryotic-annotation-pipeline) - -... -
-
- - -## Sussing out the alignment work for the pipeline - -### On calling `Bowtie 2` -Section ties into the section immediately [above](#outstanding-ongoing-questions-points-etc) and [below](#in-progress-steps-of-the-pipeline) -```bash -#!/bin/bash -#DONTRUN - -bowtie2 \ - -p "${threads}" \ - -x "${reference_genome}" \ - -1 "${infiles[0]}" \ - -2 "${infiles[1]}" \ - --trim5 1 \ - --local \ - --very-sensitive-local \ - --no-unal \ - --no-mixed \ - --no-discordant \ - --phred33 \ - -I 10 \ - -X 700 \ - --no-overlap \ - --no-dovetail \ - | samtools sort -@ "${threads}" -o "${infiles[0]%_R1.fastq}_sorted.bam" - -``` - - -#### Meaning of `Bowtie 2` parameters -```txt --p: threads --x: Bowtie2 indices, including path and root --1: Read #1 of paired-end reads --2: Read #2 of paired-end reads ---trim5: trim bases from 5'/left end of reads ---local: local alignment; ends might be soft clipped (off) ---very-sensitive-local: -D 20 -R 3 -N 0 -L 20 -i S,1,0.50 - -D: give up extending after failed extends in a row (15) - -R: for reads w/ repetitive seeds, try sets of seeds (2) - -N: max # mismatches in seed alignment; can be 0 or 1 (0) - -L: length of seed substrings; must be >3, <32 (22) - -i: interval between seed substrings w/r/t read len (S,1,1.15) ---no-unal: suppress SAM records for unaligned reads ---no-mixed: suppress unpaired alignments for paired reads ---no-discordant: suppress discordant alignments for paired reads - From biostars.org/p/78446/, a discordant alignment is an alignment where - both mates align uniquely, but that does not satisfy the paired-end - constraints (--fr/--rf/--ff, -I, -X). ---phred33: qualities are Phred+33 (default) --I: minimum fragment length (0) --X: maximum fragment length (500) ---no-overlap: not concordant when mates overlap at all ---no-dovetail: NA - -Based on the description for --dovetail, "concordant when mates extend past -each other", I presume --no-dovetail means "not concordant when mates extend -past each other" - -#QUESTION Why do we do '--trim5 1'? - #QUESTION What is the length of our reads? Is it something to do with that? -``` - -When calling `Bowtie2` for [in-progress pipeline **step 3**](#in-progress-steps-of-the-pipeline)), we'll want to ~~remove the pipe to `samtools` and~~ take advantage of these flags for directing the alignments, or lack thereof, to specific files -```txt - --un write unpaired reads that didn't align to - --al write unpaired reads that aligned at least once to - --un-conc write pairs that didn't align concordantly to - --al-conc write pairs that aligned concordantly at least once to - (Note: for --un, --al, --un-conc, or --al-conc, add '-gz' to the option name, e.g. - --un-gz , to gzip compress output, or add '-bz2' to bzip2 compress output.) -``` - - -#### How we should call `Bowtie 2` -Thus, we'll want to call `Bowtie 2` like this (also incorporates thoughts from sub-bullets for [**Step 3** below](#in-progress-steps-of-the-pipeline)): -```bash -#!/bin/bash -#DONTRUN - -bowtie2 \ - -p "${threads}" \ - -x "${reference_genome}" \ - -1 "${infiles[0]}" \ - -2 "${infiles[1]}" \ - --local \ - --very-sensitive-local \ - --phred33 \ - -I 10 \ - -X 700 \ - --un-conc-gz "${infiles[0]%_R1.fastq}.unaligned" \ - --al-conc-gz "${infiles[0]%_R1.fastq}.aligned" - | samtools sort -@ "${threads}" -o "${infiles[0]%_R1.fastq}_sorted.bam" - - -# Bowtie2 will append .1.fastq.gz and .2.fastq.gz to -#+ "${infiles[0]%_R1.fastq}.unaligned" -```` - - -### On calling `STAR` -- Section ties into the section immediately [above](#outstanding-ongoing-questions-points-etc) and [below](#in-progress-steps-of-the-pipeline) -- Performing `STAR` "genome generation" (i.e., creating an indexed genome file with annotations) is based on the parameters described [here (example call)](https://groups.google.com/g/rna-star/c/TPTdAL7NNZ4), [here (on `--genomeSAindexNbases`)](https://groups.google.com/g/rna-star/c/08UtIdEFFmY/m/gU1eif_1KdwJ), and [here (on `--sjdbGTFfeatureExon CDS`)](https://groups.google.com/g/rna-star/c/IOJuxxONrKs/m/a0jV0kkCAQAJ) -- An [important consideration](https://groups.google.com/g/rna-star/c/08UtIdEFFmY/m/gU1eif_1KdwJ) for building the yeast genome index with `STAR` -- Performing `STAR` alignment with *S. cerevisiae* data is based on the parameters described [here in the rna-star Google group](https://groups.google.com/g/rna-star/c/hQeHTBbkc0c) - - -#### Building a `STAR` genome index -```bash -#!/bin/bash -#DONTRUN - -STAR \ - --runThreadN "${SLURM_CPUS_ON_NODE}" \ - --runMode genomeGenerate \ - --genomeDir "${genomeDir}" \ - --genomeFastaFiles "${genomeFastaFiles}" \ - --sjdbGTFfile "${sjdbGTFfile}" \ - --sjdbOverhang ${sjdbOverhang} \ - --sjdbGTFtagExonParentTranscript Parent \ - --genomeSAindexNbases "${genomeSAindexNbases}" - -# 'exon' not found in gff3 for yeast, but 'CDS' is, so use that for -#+ --sjdbGTFfeatureExon - -# Wait, this is not true--see plenty of examples of 'exon' in the .gff3.gz -#+ files; thus, remove --sjdbGTFfeatureExon CDS from the call -``` - - -#### Meaning of `STAR` parameters for `genomeGenerate` -Meaning of the parameters for `STAR --runMode genomeGenerate`: -```txt - --runThreadN number of threads to be used for genome generation - --genomeDir path to the directory where the genome indices are stored; - must be mkdir'd already - --genomeFastaFiles one or more FASTA files with the genome reference sequences - --sjdbGTFfile path to the file with annotated transcripts in the standard - .gtf format; STAR can be run without annotations, but using - annotations is highly recommended whenever they are - available; the annotations can also be included on the fly - at the mapping step (that is, instead of including them - now, they can be included in the mapping step); for .gff3 - formatted annotations, use - '--sjdbGTFtagExonParentTranscript Parent' - --sjdbOverhang length of genomic sequence around the annotated junction to - be used in constructing the splice junctions database; this - length should be equal to the ReadLength-1, where - ReadLength is the length of the reads; in case of reads of - varying length, the value should be max(ReadLength)-1 - --sjdbGTFfeatureExon (see below) ---sjdbGTFtagExonParentTranscript use when a .gff3 formatted annotation is supplied to - --sjdbGTFfile; in general, for --sjdbGTFfile files STAR - only processes lines that have --sjdbGTFfeatureExon (=exon - by default) in the 3rd field (column); exons are assigned - to the transcripts using parent-child relationship defined - by the --sjdbGTFtagExonParentTranscript (=transcript id by - default) .gtf/.gff attribute - --genomeSAindexNbases for small genomes, the parameter --genomeSAindexNbases must - be scaled down, with a typical value of - min(14, log2(GenomeLength)/2 - 1); for example, for a 1 Mb - genome, this is equal to 9; for a 100 kb genome, this is - equal to 7; for yeast, this is ~12 -``` - - -#### How we should call `STAR` -```bash -#!/bin/bash -#DONTRUN - -STAR \ - --runThreadN "${SLURM_CPUS_ON_NODE}" \ - --outSAMunmapped Within \ - --genomeDir "${genomeDir}" \ - --readFilesIn "${infiles[0]}" "${infiles[1]}" \ - --outFileNamePrefix "${infiles[0]%_R1.fastq}" \ - --limitBAMsortRAM 4000000000 \ - --outFilterMultimapNmax 1 \ - --alignSJoverhangMin 8 \ - --alignSJDBoverhangMin 1 \ - --outFilterMismatchNmax 999 \ - --alignIntronMin 4 \ - --alignIntronMax 5000 \ - --alignMatesGapMax 5000 \ - --outSAMtype BAM SortedByCoordinate - -# Don't need... -#+ - '--readFilesCommand zcat' b/c .fastq files are unzipped -#+ - '--quantMode TranscriptomeSAM \' b/c only care about what does and -#+ does not align -#+ - '--outTmpDir' b/c we can just use the default settings -#+ - '--outSAMattributes' b/c the default is fine - -# Changes... -#+ - Change '--alignIntronMin' from '0' to '4' per this note from Dobin: -#+ "I would use at least 4 for --alignIntronMin , I do not think the very -#+ small introns in the annotations are real" -#+ - https://groups.google.com/g/rna-star/c/hQeHTBbkc0c?pli=1 -#+ - https://groups.google.com/d/msg/rna-star/LqxVCE34464/GBordrd6AQAJ -#+ - More from Dobin: "I would increase --alignMatesGapMax to at least -#+ --alignIntronMin since the gap between mates may contain a splice -#+ junction." -#+ - Marco increased --alignMatesGapMax from '2000' to '5000' - -# Miscellaneous notes -#+ - If we used default settings for --alignIntronMax, the value would be -#+ 589824 (see 'Meaning of parameters...' below); leave as is (set by -#+ Marco) -#+ - Can maybe leave '--outSAMattrIHstart 0' as is; default is '1'? '1' is -#+ needed for use with some downstream applications, including StringTie -#+ and Cufflinks; however, that doesn't matter for my situation, so just -#+ delete it and go with defaults for now -``` - - -##### Meaning of `STAR` parameters for `alignReads` -```txt - --runThreadN number of threads to run STAR - < format: int>0 > - - --outSAMunmapped output of unmapped reads in the SAM format - 1st word: - None ... no output - Within ... output unmapped reads within the main SAM file - (i.e., Aligned.out.sam) - 2nd word: - KeepPairs ... record unmapped mate for each alignment, and, - in case of unsorted output, keep it adjacent - to its mapped mate; only affects multi-mapping - reads - < string(s) > - - --genomeDir path to the directory where genome files are stored (for --runMode - alignReads) or will be generated (for --runMode generateGenome) - < format: ./GenomeDir/ > - - --readFilesIn paths to files that contain input read1 (and, if needed, read2) - < format: string(s); format: Read1 Read2 > - - --outFileNamePrefix output files name prefix (including full or relative path) - < format: string; format: ./ > - - --readFilesCommand command line to execute for each of the input file; this command - should generate FASTA or FASTQ text and send it to stdout; for - example, 'zcat' to uncompress .gz files, 'bzcat' to uncompress .bz2 - files, etc. - < string(s) > - - --quantMode types of quantification requested - - ... none - TranscriptomeSAM ... output SAM/BAM alignments to transcriptome - into a separate file - GeneCounts ... count reads per gene - < string(s) > - - --limitBAMsortRAM maximum available RAM (bytes) for sorting BAM; if =0, it will be set - to the genome index size; 0 value can only be used with --genomeLoad - NoSharedMemory option < int>=0 > - - --outFilterType type of filtering - Normal ... standard filtering using only current alignment - BySJout ... keep only those reads that contain junctions that - passed filtering into SJ.out.tab - < format: string; default: Normal > - ---outFilterMultimapNmax maximum number of loci the read is allowed to map to; alignments - (all of them) will be output only if the read maps to no more loci - than this value; otherwise no alignments will be output, and the - read will be counted as "mapped to too many loci" in the - Log.final.out - < format: int; default: 10 > - - --alignSJoverhangMin minimum overhang (i.alignIntronMine. block size) for spliced alignments - < format: int>0; default: 5 > - - --alignSJDBoverhangMin minimum overhang (i.e. block size) for annotated (sjdb) spliced - alignments - < format: int>0; default: 3 > - ---outFilterMismatchNmax alignment will be output only if it has no more mismatches than this - value - < format: int; default: 10 > - - --alignIntronMin minimum intron size: genomic gap is considered intron if its - length>=alignIntronMin, otherwise it is considered Deletion - < default: 21 > - - --alignIntronMax maximum intron size, if 0, max intron size will be determined by - (2^winBinNbits)*winAnchorDistNbins - < default: 0 > - - --winBinNbits =log2(winBin), where winBin is the size of the bin for the - windows/clustering, each window will occupy an integer number of - bins - < int>0; default: 16 > - - --winAnchorDistNbins max number of bins between two anchors that allows aggregation of - anchors into one window - < int>0; default: 9 > - - --alignMatesGapMax maximum gap between two mates, if 0, max intron gap will be - determined by (2^winBinNbits)*winAnchorDistNbins - < default: 0 > - - --outTmpDir path to a directory that will be used as temporary by STAR; all - contents of this directory will be removed; the temp directory will - default to outFileNamePrefix_STARtmp - < format: string > - - --outSAMattrIHstart start value for the IH attribute; 0 may be required by some - downstream software, such as Cufflinks or StringTie - < int>=0; default: 1 > - - --outSAMattributes a string of desired SAM attributes, in the order desired for the - output SAM; tags can be listed in any combination/order - < format: string; default: Standard > - - --outSAMtype type of SAM/BAM output - 1st word: - BAM ... output BAM without sorting - SAM ... output SAM without sorting - None ... no SAM/BAM output - 2nd, 3rd: - Unsorted ... standard unsorted - SortedByCoordinate ... sorted by coordinate; this option - will allocate extra memory for - sorting which can be specified by - --limitBAMsortRAM - < format: strings; default: SAM > -``` - - -##### Rationale behind parameters based on [pertinent 'rna-star' Google group conversation](https://groups.google.com/g/rna-star/c/hQeHTBbkc0c) -
-Click here to expand - - -###### [Post #1, Marco, 2016-0502](https://groups.google.com/g/rna-star/c/hQeHTBbkc0c/m/o7jPGuYfBQAJ) -```txt -Hi, - -which is the set of parameters to use for mapping RNA-seq data of S cerevisiae? - -Thanks, -Marco -``` - - -###### [Post #2, Alex, 2016-0503](https://groups.google.com/g/rna-star/c/hQeHTBbkc0c/m/2tgQSP9vBQAJ) -```txt -Hi Marco, - -this is what I would recommend for the first run: - -at the genome generation stage: ---genomeSAindexNbases 10 -at the mappings stage: ---alignIntronMin --alignIntronMax - -You can estimate expected intron size distribution from the annotated junctions. I would increase the range compared to the annotations to allow for detection of short and long novel introns. - -Cheers -Alex -``` - - -###### [Post #3, Marco, 2016-0504](https://groups.google.com/g/rna-star/c/hQeHTBbkc0c/m/2tgQSP9vBQAJ) -```txt -Hi Alex, - -Thanks for your reply. This is the first time I do this kind of analysis, so I will be pedantic to be sure that I'm implementing it correctly. -I ask you to check the next lines and tell me if they look reasonable to you. - -At the genome generation stage, I use the command: - -STAR --runMode genomeGenerate --runThreadN 8 --genomeDir . --genomeFastaFiles Saccharomyces_cerevisiae.R64-1-1.dna.chromosome.fa --sjdbGTFfile Saccharomyces_cerevisiae.R64-1-1.81.gtf --outFileNamePrefix Saccharomyces_cerevisiae.R64-1-1.81.list_of_transcripts --genomeSAindexNbases 10 - - - -which should implement your suggestion. - -To set the mapping stage, I estimate the expected intron size distribution looking at the file sjdbList.out.tab. -I Run the commands: - - -cat sjdbList.out.tab | awk '{print sqrt(($2-$3)*($2-$3))}' | sort -k 1n | head -1 - -0 - -cat sjdbList.out.tab | awk '{print sqrt(($2-$3)*($2-$3))}' | sort -k 1n | tail -1 - -2482 - - -So my first guess for the command --alignIntronMin --alignIntronMax -is ---alignIntronMin 0 --alignIntronMax 5000 - -because the average gene size in S cerevisiae is about 1000 (estimated looking at the average region spanned by the loci annotated in the -.gtf file). - -STAR --runThreadN 12 --outSAMunmapped Within --genomeDir . --readFilesIn XXXread1XXX XXXread2XXX --outFileNamePrefix XXXoutputXXX --readFilesCommand zcat --quantMode TranscriptomeSAM --limitBAMsortRAM 4000000000 --outFilterType BySJout --outFilterMultimapNmax 1 --alignSJoverhangMin 8 --alignSJDBoverhangMin 1 --outFilterMismatchNmax 999 --alignIntronMin 0 --alignIntronMax 5000 --alignMatesGapMax 2000 --outTmpDir $TMPDIR/STAR_ --outSAMattrIHstart 0 --outSAMattributes NH HI NM MD AS nM --outSAMtype BAM Unsorted SortedByCoordinate - - -I left the rest of the parameters to be the default ones - -I'm analysing 42 samples. The results are summarised in the attached file. I provide the average (Min = Max =) per field. - - - -Thanks a lot, -Marco -``` - - -###### [Post #4, Marco, 2016-0504](https://groups.google.com/g/rna-star/c/hQeHTBbkc0c/m/21okPLXQBQAJ) -```txt -Hi Marco, - -your parameters look reasonable. -I would use at least 4 for --alignIntronMin , I do not think the very small introns in the annotations are real https://groups.google.com/d/msg/rna-star/LqxVCE34464/GBordrd6AQAJ. -I would increase --alignMatesGapMax to at least --alignIntronMin since the gap between mates may contain a splice junction. - -The mapping stats look good on average. 68% of unique mappers for the worst sample is on the low inside, and same for the 92 bases mapped out of 98. -Since you used --outFilterMultimapNmax 1, all multi-mappers map "too many times", so you have high % of reads mapped to too many loci - -Cheers -Alex -``` - - -###### [Post #5, Marco, 2016-0504](https://groups.google.com/g/rna-star/c/hQeHTBbkc0c/m/qc0r-9vWBQAJ) -```txt -Hi Alex, - -I run the analysis, following your suggestions: - ---alignIntronMin 10 ---alignMatesGapMax 5000 - -obtaining very similar results wrt to the previous analysis (see attached file). -The case in which are found only 68% of uniquely mapped reads is still there, but it is the only case below 75%. - -I'm already happy with these parameters. -Just for curiosity, a part from increasing --outFilterMultimapNmax 1, are there other parameters that I could tune to try to increase this percentage? -(Log.final.out file in attachment) - - -Thanks, -Marco -``` - -Additional comments omitted. -
- - -### Implementing the alignment steps with `STAR` and `Bowtie 2` - -#### Generating files needed for `STAR` alignment (2022-1107) -...to the combined reference genes (*S. cerevisiae*, *K. lactis*, and S20) - - -##### Preparing the `.fasta` and `.gff3` files for `STAR` -
-Click here to expand - -```bash -#!/bin/bash -#DONTRUN - -# grabnode can be "on" or "off" - - -# Download .gff3 files for sacCer3 (Ensembl 108) ----------------------------- -cd ~/genomes/sacCer3/Ensembl/108 -mkdir -p gff3 && cd gff3/ - -URL="https://ftp.ensembl.org/pub/release-108/gff3/saccharomyces_cerevisiae" - -curl \ - "${URL}/CHECKSUMS" \ - > "CHECKSUMS" - -curl \ - "${URL}/README" \ - > "README" - -curl \ - "${URL}/Saccharomyces_cerevisiae.R64-1-1.108.abinitio.gff3.gz" \ - > "Saccharomyces_cerevisiae.R64-1-1.108.abinitio.gff3.gz" - -curl \ - "${URL}/Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz" \ - > "Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz" - -#NOTE No "abinitio" gene predictions for K. lactis - - -# Are chromosome names consistent between sacCer3 .gff3 and .fasta? ---------- -# Check the file contents: How are chromosomes named? -zcat Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz | head -23 -# ##gff-version 3 -# ##sequence-region I 1 230218 -# ##sequence-region II 1 813184 -# ##sequence-region III 1 316620 -# ##sequence-region IV 1 1531933 -# ##sequence-region IX 1 439888 -# ##sequence-region Mito 1 85779 -# ##sequence-region V 1 576874 -# ##sequence-region VI 1 270161 -# ##sequence-region VII 1 1090940 -# ##sequence-region VIII 1 562643 -# ##sequence-region X 1 745751 -# ##sequence-region XI 1 666816 -# ##sequence-region XII 1 1078177 -# ##sequence-region XIII 1 924431 -# ##sequence-region XIV 1 784333 -# ##sequence-region XV 1 1091291 -# ##sequence-region XVI 1 948066 -# #!genome-build R64-1-1 -# #!genome-version R64-1-1 -# #!genome-date 2011-09 -# #!genome-build-accession GCA_000146045.2 -# #!genebuild-last-updated 2018-10 - -#QUESTION Need to rename "Mito"? #ANSWER No (see immediately below) - -cd ~/genomes/sacCer3/Ensembl/108/DNA - -grep "^>" Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -# >I -# >II -# >III -# >IV -# >V -# >VI -# >VII -# >VIII -# >IX -# >X -# >XI -# >XII -# >XIII -# >XIV -# >XV -# >XVI -# >Mito - - -# Check on consistency of chromosome names in K. lactis ---------------------- -#+ ...looking at .fasta and .gff3.gz -cd ~/genomes/kluyveromyces_lactis_gca_000002515/Ensembl/55 - -zcat ./gff3/Kluyveromyces_lactis_gca_000002515.ASM251v1.55.gff3.gz \ - | head -11 -# ##gff-version 3 -# ##sequence-region A 1 1062590 -# ##sequence-region B 1 1320834 -# ##sequence-region C 1 1753957 -# ##sequence-region D 1 1715506 -# ##sequence-region E 1 2234072 -# ##sequence-region F 1 2602197 -# #!genome-build Genolevures Consortium ASM251v1 -# #!genome-version ASM251v1 -# #!genome-build-accession GCA_000002515.1 -# #!genebuild-last-updated 2015-02 - -grep \ - "^>" \ - ./DNA/Kluyveromyces_lactis_gca_000002515.ASM251v1.dna.toplevel.chr-rename.fasta -# >A -# >B -# >C -# >D -# >E -# >F - -#NOTE #IMPORTANT For both genomes, chromosome names are consistent - - -# Merge the two .gff3 files -------------------------------------------------- -grabnode # Lowest and/or default settings - -cd ~/genomes/ - -# Use AGAT (Another Gff Analysis Toolkit): -#+ biostars.org/p/413510/ -ml AGAT/0.9.2-GCC-11.2.0 # Nice, a module is available - -# This seems like the script to use: agat_sp_merge_annotations.pl -agat_sp_merge_annotations.pl -# -# ------------------------------------------------------------------------------ -# | Another GFF Analysis Toolkit (AGAT) - Version: v0.9.1 | -# | https://github.com/NBISweden/AGAT | -# | National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se | -# ------------------------------------------------------------------------------ -# -# At least 2 files are mandatory: -# --gff file1 --gff file2 -# -# -# Usage: -# agat_sp_merge_annotations.pl --gff infile1 --gff infile2 --out outFile -# agat_sp_merge_annotations.pl --help - -agat_sp_merge_annotations.pl --help -# -# ------------------------------------------------------------------------------ -# | Another GFF Analysis Toolkit (AGAT) - Version: v0.9.1 | -# | https://github.com/NBISweden/AGAT | -# | National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se | -# ------------------------------------------------------------------------------ -# -# -# Name: -# agat_sp_merge_annotations.pl -# -# Description: -# This script merge different gff annotation files in one. It uses the -# Omniscient parser that takes care of duplicated names and fixes other -# oddities met in those files. -# -# Usage: -# agat_sp_merge_annotations.pl --gff infile1 --gff infile2 --out outFile -# agat_sp_merge_annotations.pl --help -# -# Options: -# --gff or -f -# Input GTF/GFF file(s). You can specify as much file you want -# like so: -f file1 -f file2 -f file3 -# -# --out, --output or -o -# Output gff3 file where the gene incriminated will be write. -# -# --help or -h -# Display this helpful text. -# -# Feedback: -# Did you find a bug?: -# Do not hesitate to report bugs to help us keep track of the bugs and -# their resolution. Please use the GitHub issue tracking system available -# at this address: -# -# https://github.com/NBISweden/AGAT/issues -# -# Ensure that the bug was not already reported by searching under Issues. -# If you're unable to find an (open) issue addressing the problem, open a new one. -# Try as much as possible to include in the issue when relevant: -# - a clear description, -# - as much relevant information as possible, -# - the command used, -# - a data sample, -# - an explanation of the expected behaviour that is not occurring. -# -# Do you want to contribute?: -# You are very welcome, visit this address for the Contributing -# guidelines: -# https://github.com/NBISweden/AGAT/blob/master/CONTRIBUTING.md - -infile_1="./sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz" -infile_2="./kluyveromyces_lactis_gca_000002515/Ensembl/55/gff3/Kluyveromyces_lactis_gca_000002515.ASM251v1.55.gff3.gz" -outfile="./combined_SC_KL_20S/g/combined_SC_KL" - -mkdir -p "$(dirname "${outfile}")" - -agat_sp_merge_annotations.pl \ - -f "${infile_1}" \ - -f "${infile_2}" \ - -o "${outfile}" -# See STDERR printed to screen below - -# Give a proper name to the outdirectory within "${outfile}" -mv "$(dirname "${outfile}")" "./combined_SC_KL_20S/gff3" -# For some reason, the sequence 'gff3' is stripped away from strings by AGAT - -# Rename and compress outfile -outfile="./combined_SC_KL_20S/gff3/combined_SC_KL" - -mv "${outfile}.gff" "${outfile}.gff3" -gzip "${outfile}.gff3" - -ls -1 ./combined_SC_KL_20S/gff3 # Check -# combined_SC_KL.gff3.gz - - -# Are chromosome names consistent for combined_SC_KL_20S? -------------------- -grep "^>" ./combined_SC_KL_20S/fasta/combined_SC_KL_20S.fasta -# >I -# >II -# >III -# >IV -# >V -# >VI -# >VII -# >VIII -# >IX -# >X -# >XI -# >XII -# >XIII -# >XIV -# >XV -# >XVI -# >Mito -# >A -# >B -# >C -# >D -# >E -# >F -# >20S - -zcat ./combined_SC_KL_20S/gff3/combined_SC_KL.gff3.gz \ - | head -33 -# ##gff-version 3 -# ##sequence-region I 1 230218 -# ##sequence-region II 1 813184 -# ##sequence-region III 1 316620 -# ##sequence-region IV 1 1531933 -# ##sequence-region IX 1 439888 -# ##sequence-region Mito 1 85779 -# ##sequence-region V 1 576874 -# ##sequence-region VI 1 270161 -# ##sequence-region VII 1 1090940 -# ##sequence-region VIII 1 562643 -# ##sequence-region X 1 745751 -# ##sequence-region XI 1 666816 -# ##sequence-region XII 1 1078177 -# ##sequence-region XIII 1 924431 -# ##sequence-region XIV 1 784333 -# ##sequence-region XV 1 1091291 -# ##sequence-region XVI 1 948066 -# #!genome-build R64-1-1 -# #!genome-version R64-1-1 -# #!genome-date 2011-09 -# #!genome-build-accession GCA_000146045.2 -# #!genebuild-last-updated 2018-10 -# ##sequence-region A 1 1062590 -# ##sequence-region B 1 1320834 -# ##sequence-region C 1 1753957 -# ##sequence-region D 1 1715506 -# ##sequence-region E 1 2234072 -# ##sequence-region F 1 2602197 -# #!genome-build Genolevures Consortium ASM251v1 -# #!genome-version ASM251v1 -# #!genome-build-accession GCA_000002515.1 -# #!genebuild-last-updated 2015-02 - -#NOTE #IMPORTANT Chromosome names are consistent -``` -Call to [AGAT](https://www.biostars.org/p/413510/) `agat_sp_merge_annotations.pl` printed the following to screen (`STDERR`): -
-Click here to expand - -```txt -******************************************************************************** -* - Start parsing - * -******************************************************************************** --------------------------- parse options and metadata -------------------------- -=> Accessing the feature level json files - Using standard /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/features_level1.json file - Using standard /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/features_level2.json file - Using standard /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/features_level3.json file - Using standard /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/features_spread.json file -=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag): - * locus_tag - * gene_id -=> merge_loci option deactivated -=> Machine information: - This script is being run by perl v5.34.0 - Bioperl location being used: /app/software/BioPerl/1.7.8-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0/Bio/ - Operating system being used: linux -=> Accessing Ontology - No ontology accessible from the gff file header! - We use the SOFA ontology distributed with AGAT: - /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/so.obo - Read ontology /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/so.obo: - 4 root terms, and 2596 total terms, and 1516 leaf terms - Filtering ontology: - We found 1861 terms that are sequence_feature or is_a child of it. ---------------------------------- parsing file --------------------------------- -=> Number of line in file: 35862 -=> Number of comment lines: 7167 -=> Fasta included: No -=> Number of features lines: 28695 -=> Number of feature type (3rd column): 16 - * Level1: 6 => transposable_element_gene ncRNA_gene chromosome gene pseudogene transposable_element - * level2: 7 => snRNA ncRNA pseudogenic_transcript tRNA mRNA rRNA snoRNA - * level3: 3 => exon five_prime_UTR CDS - * unknown: 0 => -=> Version of the Bioperl GFF parser selected by AGAT: 3 -Parsing: 100% [======================================================]D 0h00m03s -******************************************************************************** -* - End parsing - * -* done in 5 seconds * -******************************************************************************** - -******************************************************************************** -* - Start checks - * -******************************************************************************** ----------------------------- Check1: feature types ----------------------------- ------------------------------------ ontology ----------------------------------- -All feature types in agreement with the Ontology. -------------------------------------- agat ------------------------------------- -AGAT can deal with all the encountered feature types (3rd column) ------------------------------- done in 0 seconds ------------------------------- - ------------------------------- Check2: duplicates ------------------------------ -None found ------------------------------- done in 0 seconds ------------------------------- - --------------------------- Check3: sequential bucket --------------------------- -None found ------------------------------- done in 0 seconds ------------------------------- - ---------------------------- Check4: l2 linked to l3 ---------------------------- -91 cases fixed where L3 features have parent feature(s) missing ------------------------------- done in 0 seconds ------------------------------- - ---------------------------- Check5: l1 linked to l2 ---------------------------- -No problem found ------------------------------- done in 0 seconds ------------------------------- - ---------------------------- Check6: remove orphan l1 --------------------------- -We remove only those not supposed to be orphan -91 cases removed where L1 features do not have children (while they are suposed to have children). ------------------------------- done in 0 seconds ------------------------------- - -------------------------- Check7: all level3 locations ------------------------- ------------------------------- done in 0 seconds ------------------------------- - ------------------------------- Check8: check cds ------------------------------- -No problem found ------------------------------- done in 0 seconds ------------------------------- - ------------------------------ Check9: check exons ------------------------------ -No exons created -No exons locations modified -No supernumerary exons removed -No level2 locations modified ------------------------------- done in 0 seconds ------------------------------- - ------------------------------ Check10: check utrs ------------------------------ -No UTRs created -No UTRs locations modified -No supernumerary UTRs removed ------------------------------- done in 1 seconds ------------------------------- - ------------------------- Check11: all level2 locations ------------------------- -No problem found ------------------------------- done in 0 seconds ------------------------------- - ------------------------- Check12: all level1 locations ------------------------- -No problem found ------------------------------- done in 0 seconds ------------------------------- - ----------------------- Check13: remove identical isoforms ---------------------- -None found ------------------------------- done in 0 seconds ------------------------------- -******************************************************************************** -* - End checks - * -* done in 1 seconds * -******************************************************************************** - -=> OmniscientI total time: 6 seconds -./sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz GFF3 file parsed -There is 7507 exon -There is 91 rna -There is 0 transposable_element_gene -There is 424 ncrna_gene -There is 6913 cds -There is 4 five_prime_utr -There is 12 pseudogenic_transcript -There is 17 chromosome -There is 6600 gene -There is 77 snorna -There is 18 ncrna -There is 24 rrna -There is 6600 mrna -There is 91 transposable_element -There is 12 pseudogene -There is 6 snrna -There is 299 trna -******************************************************************************** -* - Start parsing - * -******************************************************************************** --------------------------- parse options and metadata -------------------------- -=> Accessing the feature level json files - Using standard /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/features_level1.json file - Using standard /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/features_level2.json file - Using standard /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/features_level3.json file - Using standard /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/features_spread.json file -=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag): - * locus_tag - * gene_id -=> merge_loci option deactivated -=> Machine information: - This script is being run by perl v5.34.0 - Bioperl location being used: /app/software/BioPerl/1.7.8-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0/Bio/ - Operating system being used: linux -=> Accessing Ontology - No ontology accessible from the gff file header! - We use the SOFA ontology distributed with AGAT: - /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/so.obo - Read ontology /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/so.obo: - 4 root terms, and 2596 total terms, and 1516 leaf terms - Filtering ontology: - We found 1861 terms that are sequence_feature or is_a child of it. ---------------------------------- parsing file --------------------------------- -=> Number of line in file: 27298 -=> Number of comment lines: 5461 -=> Fasta included: No -=> Number of features lines: 21837 -=> Number of feature type (3rd column): 12 - * Level1: 4 => chromosome biological_region gene ncRNA_gene - * level2: 6 => snRNA ncRNA tRNA rRNA mRNA lnc_RNA - * level3: 2 => exon CDS - * unknown: 0 => -=> Version of the Bioperl GFF parser selected by AGAT: 3 -gff3 reader error level1: No ID attribute found @ for the feature: A ena_mobile_element biological_region 9115 9552 . + . external_name "KLLA0_A00165t; CR382121.1:mobile_element:9115..9552" ; logic_name ena_mobile_element -gff3 reader error level1: No ID attribute found @ for the feature: A ena_mobile_element biological_region 341014 344221 . - . external_name "KLLA0_A03844t; DNA transposon of KLLA part of the newly discovered ROVER DNA transposon family of the Kluyveromyces: degenerate copy with probably 2 frameshifts" ; logic_name ena_mobile_element -gff3 reader error level1: No ID attribute found @ for the feature: A ena_mobile_element biological_region 584843 585278 . + . external_name "KLLA0_A06457t; CR382121.1:mobile_element:584843..585278" ; logic_name ena_mobile_element -gff3 reader error level1: No ID attribute found @ for the feature: A ena_misc_feature biological_region 760404 760598 . + . external_name "KLLA0_A08668s; Centromere Klla0A" ; logic_name ena_misc_feature -gff3 reader error level1: No ID attribute found @ for the feature: A ena_mobile_element biological_region 1046924 1047346 . - . external_name "KLLA0_A12023t; CR382121.1:mobile_element:complement(1046924..1047346)" ; logic_name ena_mobile_element -gff3 reader error level1: No ID attribute found @ for the feature: A ena_mobile_element biological_region 1047531 1048025 . - . external_name "KLLA0_A12034t; CR382121.1:mobile_element:complement(1047531..1048025)" ; logic_name ena_mobile_element -gff3 reader error level1: No ID attribute found @ for the feature: A ena_mobile_element biological_region 1054728 1060266 . - . external_name "KLLA0_A12134t; CR382121.1:mobile_element:complement(1054728..1060266)" ; logic_name ena_mobile_element -gff3 reader error level1: No ID attribute found @ for the feature: B ena_mobile_element biological_region 21083 21192 . + . external_name "KLLA0_B00330t; CR382122.1:mobile_element:21083..21192" ; logic_name ena_mobile_element -gff3 reader error level1: No ID attribute found @ for the feature: B ena_misc_feature biological_region 1168861 1169058 . + . external_name "KLLA0_B13299s; Centromere Klla0B" ; logic_name ena_misc_feature -gff3 reader error level1: No ID attribute found @ for the feature: C ena_misc_feature biological_region 1638151 1638347 . + . external_name "KLLA0_C18529s; Centromere Klla0C" ; logic_name ena_misc_feature -gff3 reader error level1: No ID attribute found ************** Too much WARNING message we skip the next ************** -Parsing: 100% [======================================================]D 0h00m02s -33 warning messages: gff3 reader error level1: No ID attribute found -******************************************************************************** -* - End parsing - * -* done in 3 seconds * -******************************************************************************** - -******************************************************************************** -* - Start checks - * -******************************************************************************** ----------------------------- Check1: feature types ----------------------------- ------------------------------------ ontology ----------------------------------- -INFO - Feature types not expected by the GFF3 specification: -* lnc_rna -The feature type (3rd column in GFF3) is constrained to be either a term from th -e Sequence Ontology or an SO accession number. The latter alternative is disting -uished using the syntax SO:000000. In either case, it must be sequence_feature ( -SO:0000110) or an is_a child of it.To follow rigorously the gff3 format, please -visit this website: -https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md -------------------------------------- agat ------------------------------------- -AGAT can deal with all the encountered feature types (3rd column) ------------------------------- done in 0 seconds ------------------------------- - ------------------------------- Check2: duplicates ------------------------------ -None found ------------------------------- done in 0 seconds ------------------------------- - --------------------------- Check3: sequential bucket --------------------------- -None found ------------------------------- done in 1 seconds ------------------------------- - ---------------------------- Check4: l2 linked to l3 ---------------------------- -No problem found ------------------------------- done in 0 seconds ------------------------------- - ---------------------------- Check5: l1 linked to l2 ---------------------------- -No problem found ------------------------------- done in 0 seconds ------------------------------- - ---------------------------- Check6: remove orphan l1 --------------------------- -We remove only those not supposed to be orphan -None found ------------------------------- done in 0 seconds ------------------------------- - -------------------------- Check7: all level3 locations ------------------------- ------------------------------- done in 0 seconds ------------------------------- - ------------------------------- Check8: check cds ------------------------------- -No problem found ------------------------------- done in 0 seconds ------------------------------- - ------------------------------ Check9: check exons ------------------------------ -No exons created -No exons locations modified -No supernumerary exons removed -No level2 locations modified ------------------------------- done in 0 seconds ------------------------------- - ------------------------------ Check10: check utrs ------------------------------ -No UTRs created -No UTRs locations modified -No supernumerary UTRs removed ------------------------------- done in 0 seconds ------------------------------- - ------------------------- Check11: all level2 locations ------------------------- -No problem found ------------------------------- done in 0 seconds ------------------------------- - ------------------------- Check12: all level1 locations ------------------------- -No problem found ------------------------------- done in 0 seconds ------------------------------- - ----------------------- Check13: remove identical isoforms ---------------------- -None found ------------------------------- done in 0 seconds ------------------------------- -******************************************************************************** -* - End checks - * -* done in 1 seconds * -******************************************************************************** - -=> OmniscientI total time: 4 seconds -./kluyveromyces_lactis_gca_000002515/Ensembl/55/gff3/Kluyveromyces_lactis_gca_000002515.ASM251v1.55.gff3.gz GFF3 file parsed -There is 6 chromosome -There is 5076 gene -There is 33 biological_region -There is 1 lnc_rna -There is 5076 mrna -There is 21 rrna -There is 1 ncrna -There is 310 trna -There is 35 snrna -There is 5659 exon -There is 5251 cds -There is 368 ncrna_gene - -Total raw data of files together: -There is 77 snorna -There is 1 lnc_rna -There is 23 chromosome -There is 33 biological_region -There is 11676 gene -There is 41 snrna -There is 12 pseudogene -There is 609 trna -There is 19 ncrna -There is 45 rrna -There is 11676 mrna -There is 91 transposable_element -There is 13166 exon -There is 91 rna -There is 0 transposable_element_gene -There is 4 five_prime_utr -There is 12 pseudogenic_transcript -There is 792 ncrna_gene -There is 12164 cds - -Now merging overlaping loci, and removing identical isoforms -******************************************************************************** -* - Start parsing - * -******************************************************************************** --------------------------- parse options and metadata -------------------------- -=> Accessing the feature level json files - Using standard /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/features_level1.json file - Using standard /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/features_level2.json file - Using standard /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/features_level3.json file - Using standard /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/features_spread.json file -=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag): - * locus_tag - * gene_id -=> merge_loci option activated -=> Machine information: - This script is being run by perl v5.34.0 - Bioperl location being used: /app/software/BioPerl/1.7.8-GCCcore-11.2.0/lib/perl5/site_perl/5.34.0/Bio/ - Operating system being used: linux -=> Accessing Ontology - No ontology accessible from the gff file header! - We use the SOFA ontology distributed with AGAT: - /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/so.obo - Read ontology /app/software/AGAT/0.9.2-GCC-11.2.0/lib/perl5/site_perl/5.34.0/auto/share/dist/AGAT/so.obo: - 4 root terms, and 2596 total terms, and 1516 leaf terms - Filtering ontology: - We found 1861 terms that are sequence_feature or is_a child of it. ---------------------------------- parsing file --------------------------------- -******************************************************************************** -* - End parsing - * -* done in 2 seconds * -******************************************************************************** - -******************************************************************************** -* - Start checks - * -******************************************************************************** ----------------------------- Check1: feature types ----------------------------- ------------------------------------ ontology ----------------------------------- -INFO - Feature types not expected by the GFF3 specification: -* lnc_rna -* rna -The feature type (3rd column in GFF3) is constrained to be either a term from th -e Sequence Ontology or an SO accession number. The latter alternative is disting -uished using the syntax SO:000000. In either case, it must be sequence_feature ( -SO:0000110) or an is_a child of it.To follow rigorously the gff3 format, please -visit this website: -https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md -------------------------------------- agat ------------------------------------- -AGAT can deal with all the encountered feature types (3rd column) ------------------------------- done in 0 seconds ------------------------------- - ------------------------------- Check2: duplicates ------------------------------ -None found ------------------------------- done in 0 seconds ------------------------------- - --------------------------- Check3: sequential bucket --------------------------- -None found ------------------------------- done in 1 seconds ------------------------------- - ---------------------------- Check4: l2 linked to l3 ---------------------------- -No problem found ------------------------------- done in 0 seconds ------------------------------- - ---------------------------- Check5: l1 linked to l2 ---------------------------- -No problem found ------------------------------- done in 0 seconds ------------------------------- - ---------------------------- Check6: remove orphan l1 --------------------------- -We remove only those not supposed to be orphan -None found ------------------------------- done in 0 seconds ------------------------------- - -------------------------- Check7: all level3 locations ------------------------- ------------------------------- done in 0 seconds ------------------------------- - ------------------------------- Check8: check cds ------------------------------- -No problem found ------------------------------- done in 0 seconds ------------------------------- - ------------------------------ Check9: check exons ------------------------------ -No exons created -No exons locations modified -No supernumerary exons removed -No level2 locations modified ------------------------------- done in 1 seconds ------------------------------- - ------------------------------ Check10: check utrs ------------------------------ -No UTRs created -No UTRs locations modified -No supernumerary UTRs removed ------------------------------- done in 0 seconds ------------------------------- - ------------------------- Check11: all level2 locations ------------------------- -No problem found ------------------------------- done in 0 seconds ------------------------------- - ------------------------- Check12: all level1 locations ------------------------- -No problem found ------------------------------- done in 1 seconds ------------------------------- - --------------- Check13: merge overlaping features into same locus -------------- -165 overlapping cases found. For each case 2 loci have been merged within a same locus ------------------------------- done in 1 seconds ------------------------------- - ----------------------- Check14: remove identical isoforms ---------------------- -None found ------------------------------- done in 0 seconds ------------------------------- -******************************************************************************** -* - End checks - * -* done in 4 seconds * -******************************************************************************** - -=> OmniscientI total time: 6 seconds - -final result: -There is 19 ncrna -There is 45 rrna -There is 11676 mrna -There is 50 transposable_element -There is 10 pseudogene -There is 41 snrna -There is 609 trna -There is 23 chromosome -There is 11557 gene -There is 33 biological_region -There is 77 snorna -There is 1 lnc_rna -There is 789 ncrna_gene -There is 12164 cds -There is 12 pseudogenic_transcript -There is 4 five_prime_utr -There is 13166 exon -There is 91 rna -``` -Seems to be OK... -
-
- - -##### Getting the `.fastq` files of interest into one location -```bash -#!/bin/bash -#DONTRUN - -# grabnode should be "on" - -# Base directory containing subdirectories with original merged .fastq files -cd ~/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot - -ls -d1 Sample_57* -# Sample_5781_G1_IN -# Sample_5781_G1_IP -# Sample_5781_Q_IN -# Sample_5781_Q_IP -# Sample_5782_G1_IN -# Sample_5782_G1_IP -# Sample_5782_Q_IN -# Sample_5782_Q_IP - -ls -d1 Sample_57*/*merged*fastq* -# Sample_5781_G1_IN/5781_G1_IN_merged_R1.fastq -# Sample_5781_G1_IN/5781_G1_IN_merged_R2.fastq -# Sample_5781_G1_IP/5781_G1_IP_merged_R1.fastq -# Sample_5781_G1_IP/5781_G1_IP_merged_R2.fastq -# Sample_5781_Q_IN/5781_Q_IN_merged_R1.fastq -# Sample_5781_Q_IN/5781_Q_IN_merged_R2.fastq -# Sample_5781_Q_IP/5781_Q_IP_merged_R1.fastq -# Sample_5781_Q_IP/5781_Q_IP_merged_R2.fastq -# Sample_5782_G1_IN/5782_G1_IN_merged_R1.fastq -# Sample_5782_G1_IN/5782_G1_IN_merged_R2.fastq -# Sample_5782_G1_IP/5782_G1_IP_merged_R1.fastq -# Sample_5782_G1_IP/5782_G1_IP_merged_R2.fastq -# Sample_5782_Q_IN/5782_Q_IN_merged_R1.fastq -# Sample_5782_Q_IN/5782_Q_IN_merged_R2.fastq -# Sample_5782_Q_IP/5782_Q_IP_merged_R1.fastq -# Sample_5782_Q_IP/5782_Q_IP_merged_R2.fastq - -# Get the .fastq files into an array to loop over -cd ~ - -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find ${HOME}/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot \ - -type f \ - -name *578*merged*fastq* \ - -print0 \ - | sort -z \ -) -for i in "${infiles[@]}"; do echo "${i}"; done # Check -for i in "${infiles[@]}"; do echo "$(basename "${i}")"; done # Check - -# Make symlinks to the .fastq files in 2022_transcriptome-contructions results -mkdir -p ~/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/files_fastq_symlinks - -for i in "${infiles[@]}"; do - ln -s \ - ${i} \ - ~/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/files_fastq_symlinks/$(basename ${i}) -done - -ls -1 ~/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/files_fastq_symlinks -# 5781_G1_IN_merged_R1.fastq -# 5781_G1_IN_merged_R2.fastq -# 5781_G1_IP_merged_R1.fastq -# 5781_G1_IP_merged_R2.fastq -# 5781_Q_IN_merged_R1.fastq -# 5781_Q_IN_merged_R2.fastq -# 5781_Q_IP_merged_R1.fastq -# 5781_Q_IP_merged_R2.fastq -# 5782_G1_IN_merged_R1.fastq -# 5782_G1_IN_merged_R2.fastq -# 5782_G1_IP_merged_R1.fastq -# 5782_G1_IP_merged_R2.fastq -# 5782_Q_IN_merged_R1.fastq -# 5782_Q_IN_merged_R2.fastq -# 5782_Q_IP_merged_R1.fastq -# 5782_Q_IP_merged_R2.fastq - -#NOTE Per Alison, "IP" = Nascent, "IN" = SteadyState -``` - - -##### Checking on the length of reads for each `.fastq` file -```bash -#!/bin/bash -#DONTRUN - -# grabnode should be "on" - -cd ~/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101 - -# Prepare for and run FastQC -mkdir -p files_fastq_symlinks/FastQC - -cat << script > "./submit-FastQC.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=4 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -# submit-FastQC.sh -# KA - -module load FastQC/0.11.9-Java-11 - -infile="\${1}" -outdir="\${2}" - -fastqc \\ - --threads "\${SLURM_CPUS_ON_NODE}" \\ - --outdir "\${outdir}" \\ - "\${infile}" -script - -# Get the symlinked .fastq files into an array to loop over -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find . \ - -type l \ - -name 578*merged*fastq* \ - -print0 \ - | sort -z \ -) -for i in "${infiles[@]}"; do echo "${i}"; done # Check -for i in "${infiles[@]}"; do echo "$(basename "${i}" ".fastq")"; done # Check - -# Do a test run of submit-FastQC.sh -i="${infiles[0]}" - -mkdir -p "./files_fastq_symlinks/FastQC/$(basename "${i}" ".fastq")" - -sbatch ./submit-FastQC.sh \ - "${i}" \ - "./files_fastq_symlinks/FastQC/$(basename "${i}" ".fastq")" -#NOTE It works - -# Submit the .fastq files to SLURM -for i in "${infiles[@]}"; do - mkdir -p "./files_fastq_symlinks/FastQC/$(basename "${i}" ".fastq")" - - sbatch ./submit-FastQC.sh \ - "${i}" \ - "./files_fastq_symlinks/FastQC/$(basename "${i}" ".fastq")" - - sleep 0.5 -done - -# Clean up the FastQC work -mkdir -p exp_FastQC -mv *.{err,out}.txt exp_FastQC/ - -ls -d ./files_fastq_symlinks/FastQC/*.bak -./files_fastq_symlinks/FastQC/5781_G1_IN_merged_R1.bak -rm -r ./files_fastq_symlinks/FastQC/5781_G1_IN_merged_R1.bak - -# Going into the ./files_fastq_symlinks/FastQC subdirectories and manually -#+ spot-checking the .html files - -#NOTE #IMPORTANT The read length is bp (at least for these "WTQvsG1" files) -```` - - -#### Run `STAR` genome generation -```bash -#!/bin/bash -#DONTRUN - -# grabnode has been called with default/lowest settings -cd ~/genomes/combined_SC_KL_20S -mkdir -p STAR/{err_out,sh} -cd STAR/ - -# Reference -# STAR \ -# --runThreadN "${SLURM_CPUS_ON_NODE}" \ -# --runMode genomeGenerate \ -# --genomeDir "${genome_dir}" \ -# --genomeFastaFiles "${genome_fasta_file}" \ -# --sjdbGTFfile "${sjdb_gtf_file}" \ -# --sjdbOverhang "${sjdb_overhang}" \ -# --sjdbGTFtagExonParentTranscript Parent \ -# --genomeSAindexNbases "${genome_sa_index_n_bases}" - -cat << script > "./submit-STAR-genomeGenerate.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -# submit-STAR-genomeGenerate.sh -# KA - -module load STAR/2.7.9a-GCC-11.2.0 - -genome_dir="\${1}" -genome_fasta_file="\${2}" -sjdb_gtf_file="\${3}" -sjdb_overhang="\${4}" -genome_sa_index_n_bases="\${5}" - -STAR \\ - --runThreadN "\${SLURM_CPUS_ON_NODE}" \\ - --runMode genomeGenerate \\ - --genomeDir "\${genome_dir}" \\ - --genomeFastaFiles "\${genome_fasta_file}" \\ - --sjdbGTFfile "\${sjdb_gtf_file}" \\ - --sjdbOverhang "\${sjdb_overhang}" \\ - --sjdbGTFtagExonParentTranscript Parent \\ - --genomeSAindexNbases "\${genome_sa_index_n_bases}" -script - -# First, make sure the .gff3 file is unzipped -[[ -f ../gff3/combined_SC_KL.gff3 ]] || - { - cd ../gff3 - gzip -dk combined_SC_KL.gff3.gz - cd - - } - -# Try it out -genome_dir="." -genome_fasta_file="../fasta/combined_SC_KL_20S.fasta" -sjdb_gtf_file="../gff3/combined_SC_KL.gff3" -sjdb_overhang="49" # 50 - 1 -genome_sa_index_n_bases="10" -# Per Alex Dobin, 12 is appropriate the S. cerevisiae genome; however, in a -#+ trial run, I got the following error (broken over multiple lines by me): -#+ -#+ !!!!! WARNING: --genomeSAindexNbases 12 is too large for the genome -#+ size=22848775, which may cause seg-fault at the mapping step. Re-run genome -#+ generation with recommended --genomeSAindexNbases 11 -#+ -#+ Therefore, I changed genome_sa_index_n_bases from "12" to "11" - -#IMPORTANT -# Actually, the above is incorrect; Dobin recommends "10", not "12", for -#+ --genomeSAindexNbases: Set --genomeSAindexNbases 10 -#+ -#+ groups.google.com/g/rna-star/c/hQeHTBbkc0c?pli=1 - -sbatch submit-STAR-genomeGenerate.sh \ - "${genome_dir}" \ - "${genome_fasta_file}" \ - "${sjdb_gtf_file}" \ - "${sjdb_overhang}" \ - "${genome_sa_index_n_bases}" -#NOTE #IMPORTED Completed remarkably quickly... like, less than 10 seconds - -# Clean up -mv *.{err,out}.txt err_out/ -mv *.sh sh/ - -# Document things a bit -mkdir readme && cd readme/ -touch readme.md -echo \ - "Made 2022-1107. See readme.md in directory results/2022-1101 for details." \ - >> readme.md - -echo \ - "Files made on 2022-1107 used '--genomeSAindexNbases 11'. Alex Dobin recommends '10', not '11', for the yeast genome. Therefore, deleted those files." \ - >> readme.md - -echo "" >> readme.md - -echo \ - "Files made on 2022-1108 used '--genomeSAindexNbases 10'." \ - >> readme.md -``` - - -#### Run `STAR` alignment -```bash -#!/bin/bash -#DONTRUN - -# grabnode has been called with default/lowest settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" -mkdir -p {exp_alignment_STAR,files_bams} - -# Find and list .fastq files; designate the 'prefix' and other variables -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find . \ - -type l \ - -name *578*merged*.fastq \ - -print0 \ - | sort -z \ -) -# Some checks... -for i in "${infiles[@]}"; do echo "${i}"; done && echo "" -for i in "${infiles[@]}"; do echo "$(basename "${i}")"; done && echo -for i in "${infiles[@]}"; do echo "$(basename "${i%_R?.fastq}")"; done && echo "" - -echo "${infiles[0]}" && echo "" -echo "${infiles[1]}" && echo "" -echo "$(basename "${infiles[0]%_R?.fastq}")" && echo "" - -read_1="${infiles[0]}" -read_2="${infiles[1]}" -prefix="./files_bams/$(basename "${read_1%_R?.fastq}")" -genome_dir="${HOME}/genomes/combined_SC_KL_20S/STAR" - -echo "${genome_dir}" -echo "${read_1}" -echo "${read_2}" -echo "${prefix}" -#NOTE #REMEMBER "IP" = Nascent, "IN" = SteadyState - -# Run the alignment -if [[ -f "./submit-STAR-alignReads.sh" ]]; then - rm "./submit-STAR-alignReads.sh" -fi - -cat << script > "./submit-STAR-alignReads.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -# submit-STAR-alignReads.sh -# KA - -module load STAR/2.7.9a-GCC-11.2.0 - -genome_dir="\${1}" -read_1="\${2}" -read_2="\${3}" -prefix="\${4}" - -STAR \\ - --runThreadN "\${SLURM_CPUS_ON_NODE}" \\ - --outSAMunmapped Within \\ - --genomeDir "\${genome_dir}" \\ - --readFilesIn "\${read_1}" "\${read_2}" \\ - --outFileNamePrefix "\${prefix}" \\ - --limitBAMsortRAM 4000000000 \\ - --outFilterMultimapNmax 1 \\ - --alignSJoverhangMin 8 \\ - --alignSJDBoverhangMin 1 \\ - --outFilterMismatchNmax 999 \\ - --alignIntronMin 4 \\ - --alignIntronMax 5000 \\ - --alignMatesGapMax 5000 \\ - --outSAMtype BAM SortedByCoordinate -script - -sbatch submit-STAR-alignReads.sh \ - "${genome_dir}" \ - "${read_1}" \ - "${read_2}" \ - "${prefix}" -``` - - -##### Alignment metrics for the test run of `STAR` -```txt - Started job on | Nov 08 10:28:26 - Started mapping on | Nov 08 10:28:27 - Finished on | Nov 08 10:29:41 - Mapping speed, Million of reads per hour | 680.54 - - Number of input reads | 13988842 - Average input read length | 100 - UNIQUE READS: - Uniquely mapped reads number | 8559366 - Uniquely mapped reads % | 61.19% - Average mapped length | 98.22 - Number of splices: Total | 352426 - Number of splices: Annotated (sjdb) | 289654 - Number of splices: GT/AG | 321441 - Number of splices: GC/AG | 232 - Number of splices: AT/AC | 2334 - Number of splices: Non-canonical | 28419 - Mismatch rate per base, % | 0.39% - Deletion rate per base | 0.01% - Deletion average length | 1.19 - Insertion rate per base | 0.01% - Insertion average length | 1.17 - MULTI-MAPPING READS: - Number of reads mapped to multiple loci | 0 - % of reads mapped to multiple loci | 0.00% - Number of reads mapped to too many loci | 5035208 - % of reads mapped to too many loci | 35.99% - UNMAPPED READS: - Number of reads unmapped: too many mismatches | 0 - % of reads unmapped: too many mismatches | 0.00% - Number of reads unmapped: too short | 393913 - % of reads unmapped: too short | 2.82% - Number of reads unmapped: other | 355 - % of reads unmapped: other | 0.00% - CHIMERIC READS: - Number of chimeric reads | 0 - % of chimeric reads | 0.00% -``` - - -###### Thoughts on the alignment metrics for `STAR`: -- A lot of multimappers in the dataset... -- `#DONE` Later, check what value I assigned to `--outFilterMultimapNmax` in my 4DN RNA-seq work; consider to replace the current value, `1`, with that other value - + `#ANSWER` `--outFilterMultimapNmax 1000` -- `#DONE` What does the [`Trinity` Google Group](https://groups.google.com/g/trinityrnaseq-users) have to say about multimappers? - + `#ANSWER` Per Brian Haas at [this post](https://groups.google.com/g/trinityrnaseq-users/c/L4hypoWSk_o/m/bTO2L8ssAQAJ): "If reads are mapped to multiple genomic locations, then `Trinity` will use those reads as substrates for *de novo* assembly at each of the locations. This is important to do in the case of paralogs that share sequences in common." - * However, here, he's talking about genome-guided assembly; is this also the case for non-genome-guided assembly? - - `#ANSWER` I would think so... What he says about potential paralogs seems like it holds true in this circumstance too - + 2022-1110: The thinking here is continued and expanded [below](#more-thoughts-on-multimappers-2022-1109-1110) - - -###### Examine the flags in the `.bam` outfile from the test run of `STAR` -Use `samtools flagstat` and the bespoke function `list_tally_flags`: -```bash -#!/bin/bash -#DONTRUN - -# grabnode has been called with default/lowest settings; samtools is loaded -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" - -samtools flagstat \ - ./files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam \ - > ./files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.flagstat.txt - -less ./files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.flagstat.txt -# 27446606 + 531078 in total (QC-passed reads + QC-failed reads) -# 27446606 + 531078 primary -# 0 + 0 secondary -# 0 + 0 supplementary -# 0 + 0 duplicates -# 0 + 0 primary duplicates -# 16893176 + 225556 mapped (61.55% : 42.47%) -# 16893176 + 225556 primary mapped (61.55% : 42.47%) -# 27446606 + 531078 paired in sequencing -# 13723303 + 265539 read1 -# 13723303 + 265539 read2 -# 16893176 + 225556 properly paired (61.55% : 42.47%) -# 16893176 + 225556 with itself and mate mapped -# 0 + 0 singletons (0.00% : 0.00%) -# 0 + 0 with mate mapped to a different chr -# 0 + 0 with mate mapped to a different chr (mapQ>=5) - -cd ./files_bams - -calculate_run_time() { - # Calculate run time for chunk of code - # - # :param 1: start time in $(date +%s) format - # :param 2: end time in $(date +%s) format - # :param 3: message to be displayed when printing the run time (chr) - run_time="$(echo "${2}" - "${1}" | bc -l)" - - echo "" - echo "${3}" - printf 'Run time: %dh:%dm:%ds\n' \ - $(( run_time/3600 )) $(( run_time%3600/60 )) $(( run_time%60 )) - echo "" -} - - -display_spinning_icon() { - # Display "spinning icon" while a background process runs - # - # :param 1: PID of the last program the shell ran in the background (int) - # :param 2: message to be displayed next to the spinning icon (chr) - spin="/|\\–" - i=0 - while kill -0 "${1}" 2> /dev/null; do - i=$(( (i + 1) % 4 )) - printf "\r${spin:$i:1} %s" "${2}" - sleep .15 - done -} - - -list_tally_flags() { - # List and tally flags in a bam infile; function acts on a bam infile to - # perform piped commands (samtools view, cut, sort, uniq -c, sort -nr) that - # list and tally flags; function writes the results to a txt outfile, the - # name of which is derived from the txt infile - # - # :param 1: name of bam infile, including path (chr) - start="$(date +%s)" - - samtools view "${1}" \ - | cut -d$'\t' -f 2 \ - | sort \ - | uniq -c \ - | sort -nr \ - > "${1/.bam/.flags.txt}" & - display_spinning_icon $! \ - "Running piped commands (samtools view, cut, sort, uniq -c, sort -nr) on $(basename "${1}")... " - - end="$(date +%s)" - echo "" - calculate_run_time "${start}" "${end}" \ - "List and tally flags in $(basename "${1}")." -} - - -list_tally_flags 5781_G1_IN_mergedAligned.sortedByCoord.out.bam - -# Numbers of records in the .bam file -samtools view -c \ - 5781_G1_IN_mergedAligned.sortedByCoord.out.bam -# 27977684 - -# Numbers of records in the *_R{1,2}.fastq files -cd .. -echo $(cat ./files_fastq_symlinks/5781_G1_IN_merged_R1.fastq | wc -l)/4 | bc -# 13988842 -echo $(cat ./files_fastq_symlinks/5781_G1_IN_merged_R2.fastq | wc -l)/4 | bc -# 13988842 - -echo $(( 13988842 + 13988842 )) -# 27977684 - -# The numbers of records in the .bam and .fastq files are equivalent -``` - -Contents of outfile from running `list_tally_flags` (with some format edits and additions from me)... -```txt -5276715 77 unmapped (read, mate) -5276715 141 unmapped (read, mate) -4691235 99 -4691235 147 -3755353 83 -3755353 163 - 152761 653 unmapped (read, mate) read fails - 152761 589 unmapped (read, mate) read fails - 62364 659 read fails - 62364 611 read fails - 50414 675 read fails - 50414 595 read fails -``` -What are the meanings of these flags? Use [this tool](https://broadinstitute.github.io/picard/explain-flags.html) to check: -| flag | meaning | -| :--- | :-------------------------------------------------------------------------------------------------------------------------- | -| 77 | read paired (0x1), read unmapped (0x4), mate unmapped (0x8), first in pair (0x40) | -| 141 | read paired (0x1), read unmapped (0x4), mate unmapped (0x8), second in pair (0x80) | -| 99 | read paired (0x1), read mapped in proper pair (0x2), mate reverse strand (0x20), first in pair (0x40) | -| 147 | read paired (0x1), read mapped in proper pair (0x2), read reverse strand (0x10), second in pair (0x80) | -| 83 | read paired (0x1), read mapped in proper pair (0x2), read reverse strand (0x10), first in pair (0x40) | -| 163 | read paired (0x1), read mapped in proper pair (0x2), mate reverse strand (0x20), second in pair (0x80) | -| 653 | read paired (0x1), read unmapped (0x4), mate unmapped (0x8), second in pair (0x80), read fails* (0x200) | -| 589 | read paired (0x1), read unmapped (0x4), mate unmapped (0x8), first in pair (0x40), read fails* (0x200) | -| 659 | read paired (0x1), read mapped in proper pair (0x2), read reverse strand (0x10), second in pair (0x80), read fails* (0x200) | -| 611 | read paired (0x1), read mapped in proper pair (0x2), mate reverse strand (0x20), first in pair (0x40), read fails* (0x200) | -| 675 | read paired (0x1), read mapped in proper pair (0x2), mate reverse strand (0x20), second in pair (0x80), read fails* (0x200) | -| 595 | read paired (0x1), read mapped in proper pair (0x2), read reverse strand (0x10), first in pair (0x40), read fails* (0x200) | - - -###### Additional thoughts on the alignment metrics and flags from `STAR` -- Because we want to use the multimappers in `Trinity` transcriptome assembly (rationale in ["Thoughts on the..."](#thoughts-on-the-alignment-metrics-for-star) above), it'd probably be good to have information for where `STAR` (and `Bowtie 2`) is aligning them in the bam file, instead of them being unmapped as above -- Thus, we should adjust the parameters for how we call `STAR` to retain the multimappers -- `#DONE` Adjust `STAR` parameters based on the repetitive-element work you did in 2020 (bring your laptop to work tomorrow); for now, move on to `Bowtie 2` work - - -###### Do a little clean-up prior to running alignment with `Bowtie 2` -```bash -#!/bin/bash -#DONTRUN - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" - -mv files_bams/ exp_alignment_STAR/ -``` - - -#### Generating files needed for `Bowtie 2` alignment (2022-1108) -...to the combined reference genes (*S. cerevisiae*, *K. lactis*, and S20) - - -##### Preparing the `.fasta` and `.gff3` files for `Bowtie 2` -`Bowtie 2` indices were already generated: see [this link](../2022-1025/notebook.md#create-bowtie-2-indices); but just checking on things before diving into things... -```bash -#!/bin/bash -#DONTRUN - -cd "${HOME}/genomes/combined_SC_KL_20S" - -# Checking the .fasta -grep "^>" ./fasta/*.fasta -# >I -# >II -# >III -# >IV -# >V -# >VI -# >VII -# >VIII -# >IX -# >X -# >XI -# >XII -# >XIII -# >XIV -# >XV -# >XVI -# >Mito -# >A -# >B -# >C -# >D -# >E -# >F -# >20S - -# Checking the .gff3 -head -33 ./gff3/combined_SC_KL.gff3 -# ##gff-version 3 -# ##sequence-region I 1 230218 -# ##sequence-region II 1 813184 -# ##sequence-region III 1 316620 -# ##sequence-region IV 1 1531933 -# ##sequence-region IX 1 439888 -# ##sequence-region Mito 1 85779 -# ##sequence-region V 1 576874 -# ##sequence-region VI 1 270161 -# ##sequence-region VII 1 1090940 -# ##sequence-region VIII 1 562643 -# ##sequence-region X 1 745751 -# ##sequence-region XI 1 666816 -# ##sequence-region XII 1 1078177 -# ##sequence-region XIII 1 924431 -# ##sequence-region XIV 1 784333 -# ##sequence-region XV 1 1091291 -# ##sequence-region XVI 1 948066 -# #!genome-build R64-1-1 -# #!genome-version R64-1-1 -# #!genome-date 2011-09 -# #!genome-build-accession GCA_000146045.2 -# #!genebuild-last-updated 2018-10 -# ##sequence-region A 1 1062590 -# ##sequence-region B 1 1320834 -# ##sequence-region C 1 1753957 -# ##sequence-region D 1 1715506 -# ##sequence-region E 1 2234072 -# ##sequence-region F 1 2602197 -# #!genome-build Genolevures Consortium ASM251v1 -# #!genome-version ASM251v1 -# #!genome-build-accession GCA_000002515.1 -# #!genebuild-last-updated 2015-02 - -# Checking the Bowtie 2 indices -#+ bowtie-bio.sourceforge.net/bowtie2/manual.shtml#the-bowtie2-build-indexer -module load Bowtie2/2.4.4-GCC-11.2.0 -bowtie2-inspect --names ./Bowtie2/combined_SC_KL_20S -# I -# II -# III -# IV -# V -# VI -# VII -# VIII -# IX -# X -# XI -# XII -# XIII -# XIV -# XV -# XVI -# Mito -# A -# B -# C -# D -# E -# F -# 20S -``` - - -##### On the location of the `.fastq` files -See all the work done [here](#getting-the-fastq-files-of-interest-into-one-location) - - -##### Run `Bowtie 2` alignment -```bash -#!/bin/bash -#DONTRUN - -# Have called grabnode with lowest/default settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" - -mkdir -p exp_alignment_Bowtie_2/files_bams - -# Get .fastq files into an array -# Find and list .fastq files; designate the 'prefix' and other variables -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find . \ - -type l \ - -name *578*merged*.fastq \ - -print0 \ - | sort -z \ -) - -read_1="${infiles[0]}" -read_2="${infiles[1]}" -prefix="./exp_alignment_Bowtie_2/files_bams/$(basename "${read_1%_R?.fastq}")" -genome_dir="${HOME}/genomes/combined_SC_KL_20S/Bowtie2/combined_SC_KL_20S" - -# Some checks... -echo "${genome_dir}" -ls -lhaFG ${genome_dir}* && echo "" -echo "${read_1}" -echo "${read_2}" -echo "${prefix}" - -#NOTE #REMEMBER "IP" = Nascent, "IN" = SteadyState - -# Perform alignment with Bowtie 2 -if [[ -f "./submit-Bowtie-2.sh" ]]; then - rm "./submit-Bowtie-2.sh" -fi - -cat << script > "./submit-Bowtie-2.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -# submit-Bowtie-2.sh -# KA - -module load Bowtie2/2.4.4-GCC-11.2.0 - -genome_dir="\${1}" -read_1="\${2}" -read_2="\${3}" -prefix="\${4}" - -bowtie2 \\ - -p "\${SLURM_CPUS_ON_NODE}" \\ - -x "\${genome_dir}" \\ - -1 "\${read_1}" \\ - -2 "\${read_2}" \\ - --trim5 1 \\ - --local \\ - --very-sensitive-local \\ - --no-unal \\ - --no-mixed \\ - --no-discordant \\ - --phred33 \\ - -I 10 \\ - -X 700 \\ - --no-overlap \\ - --no-dovetail \\ - | samtools sort -@ "\${SLURM_CPUS_ON_NODE}" -o "\${prefix}_sorted.bam" - -script - -sbatch submit-Bowtie-2.sh \ - "${genome_dir}" \ - "${read_1}" \ - "${read_2}" \ - "${prefix}" -``` - - -##### Alignment metrics for the test run of `Bowtie 2` -```txt -13988842 reads; of these: - 13988842 (100.00%) were paired; of these: - 904915 (6.47%) aligned concordantly 0 times - 7154822 (51.15%) aligned concordantly exactly 1 time - 5929105 (42.38%) aligned concordantly >1 times -93.53% overall alignment rate -[bam_sort_core] merging from 7 files and 1 in-memory blocks.. -``` - - -###### Thoughts on the alignment metrics for `Bowtie 2` -- Approximately half are well-aligned -- Approximately 7% of reads don't align at all -- The rest, 43%, are discordant - - -###### Examine the flags in the `.bam` outfile from the test run of `Bowtie 2` -```bash -#!/bin/bash -#DONTRUN - -# Have called grabnode with default/lowest settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" - -# First, a bit of clean-up -mv *.txt exp_alignment_Bowtie_2/ - -ml SAMtools/1.16.1-GCC-11.2.0 - -samtools flagstat \ - ./exp_alignment_Bowtie_2/files_bams/5781_G1_IN_merged_sorted.bam \ - > ./exp_alignment_Bowtie_2/files_bams/5781_G1_IN_merged_sorted.flagstat.txt -# 26167854 + 0 in total (QC-passed reads + QC-failed reads) -# 26167854 + 0 primary -# 0 + 0 secondary -# 0 + 0 supplementary -# 0 + 0 duplicates -# 0 + 0 primary duplicates -# 26167854 + 0 mapped (100.00% : N/A) -# 26167854 + 0 primary mapped (100.00% : N/A) -# 26167854 + 0 paired in sequencing -# 13083927 + 0 read1 -# 13083927 + 0 read2 -# 26167854 + 0 properly paired (100.00% : N/A) -# 26167854 + 0 with itself and mate mapped -# 0 + 0 singletons (0.00% : N/A) -# 0 + 0 with mate mapped to a different chr -# 0 + 0 with mate mapped to a different chr (mapQ>=5) - -calculate_run_time() { - # Calculate run time for chunk of code - # - # :param 1: start time in $(date +%s) format - # :param 2: end time in $(date +%s) format - # :param 3: message to be displayed when printing the run time (chr) - run_time="$(echo "${2}" - "${1}" | bc -l)" - - echo "" - echo "${3}" - printf 'Run time: %dh:%dm:%ds\n' \ - $(( run_time/3600 )) $(( run_time%3600/60 )) $(( run_time%60 )) - echo "" -} - - -display_spinning_icon() { - # Display "spinning icon" while a background process runs - # - # :param 1: PID of the last program the shell ran in the background (int) - # :param 2: message to be displayed next to the spinning icon (chr) - spin="/|\\–" - i=0 - while kill -0 "${1}" 2> /dev/null; do - i=$(( (i + 1) % 4 )) - printf "\r${spin:$i:1} %s" "${2}" - sleep .15 - done -} - - -list_tally_flags() { - # List and tally flags in a bam infile; function acts on a bam infile to - # perform piped commands (samtools view, cut, sort, uniq -c, sort -nr) that - # list and tally flags; function writes the results to a txt outfile, the - # name of which is derived from the txt infile - # - # :param 1: name of bam infile, including path (chr) - start="$(date +%s)" - - samtools view "${1}" \ - | cut -d$'\t' -f 2 \ - | sort \ - | uniq -c \ - | sort -nr \ - > "${1/.bam/.flags.txt}" & - display_spinning_icon $! \ - "Running piped commands (samtools view, cut, sort, uniq -c, sort -nr) on $(basename "${1}")... " - - end="$(date +%s)" - echo "" - calculate_run_time "${start}" "${end}" \ - "List and tally flags in $(basename "${1}")." -} - - -list_tally_flags exp_alignment_Bowtie_2/files_bams/5781_G1_IN_merged_sorted.bam - -samtools view -c \ - ./exp_alignment_Bowtie_2/files_bams/5781_G1_IN_merged_sorted.bam -# 26167854 - -# Numbers of records in the *_R{1,2}.fastq files -cd .. -echo $(cat ./files_fastq_symlinks/5781_G1_IN_merged_R1.fastq | wc -l)/4 | bc -# 13988842 -echo $(cat ./files_fastq_symlinks/5781_G1_IN_merged_R2.fastq | wc -l)/4 | bc -# 13988842 - -echo $(( 13988842 + 13988842 )) -# 27977684 - -# Multiply by the overall alignment rate: Is it equal to the number of records in the .bam file? -echo "27977684*0.9353" | bc -# 26167527.8452; rounds up to 26167528; rounds down to 26167527 - -# The numbers of records in the .bam and .fastq files are not equivalent -``` - -Contents of outfile from running `list_tally_flags` (with some format edits)... -```txt -7070153 83 -7070153 163 -6013774 99 -6013774 147 -``` - -What are the meanings of these flags? Use [this tool](https://broadinstitute.github.io/picard/explain-flags.html) to check: -| flag | meaning | -| :--- | :----------------------------------------------------------------------------------------------------- | -| 83 | read paired (0x1), read mapped in proper pair (0x2), read reverse strand (0x10), first in pair (0x40) | -| 163 | read paired (0x1), read mapped in proper pair (0x2), mate reverse strand (0x20), second in pair (0x80) | -| 99 | read paired (0x1), read mapped in proper pair (0x2), mate reverse strand (0x20), first in pair (0x40) | -| 147 | read paired (0x1), read mapped in proper pair (0x2), read reverse strand (0x10), second in pair (0x80) | - - -##### Try re-running `Bowtie 2` alignment -...***without*** the flags for removing unaligned and discordant reads, which were mistakenly included in the first run -```bash -#!/bin/bash -#DONTRUN - -# Have called grabnode with lowest/default settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" - -# Remove the bams and other files from the "first test" -rm -r exp_alignment_Bowtie_2/ - -# Remake the experiment directory -mkdir -p exp_alignment_Bowtie_2/files_bams # Should already be done - -# Get .fastq files into an array -# Find and list .fastq files; designate the 'prefix' and other variables -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find . \ - -type l \ - -name *578*merged*.fastq \ - -print0 \ - | sort -z \ -) - -read_1="${infiles[0]}" -read_2="${infiles[1]}" -prefix="./exp_alignment_Bowtie_2/files_bams/$(basename "${read_1%_R?.fastq}")" -genome_dir="${HOME}/genomes/combined_SC_KL_20S/Bowtie2/combined_SC_KL_20S" - -# Some checks... -echo "${genome_dir}" -ls -lhaFG ${genome_dir}* && echo "" -echo "${read_1}" -echo "${read_2}" -echo "${prefix}" - -#NOTE #REMEMBER "IP" = Nascent, "IN" = SteadyState - -# Rename the script for calling Bowtie 2 as in the preceding code chunk -if [[ -f "submit-Bowtie-2.sh" ]]; then - mv "submit-Bowtie-2.sh" "submit-Bowtie-2.test-1.sh" -fi - -# Perform alignment with Bowtie 2 -if [[ -f "./submit-Bowtie-2.test-2.sh" ]]; then - rm "./submit-Bowtie-2.test-2.sh" -fi - -# Parameters updated in comparison to the first test -cat << script > "./submit-Bowtie-2.test-2.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -# submit-Bowtie-2.sh -# KA - -module load Bowtie2/2.4.4-GCC-11.2.0 - -genome_dir="\${1}" -read_1="\${2}" -read_2="\${3}" -prefix="\${4}" - -bowtie2 \\ - -p "\${SLURM_CPUS_ON_NODE}" \\ - -x "\${genome_dir}" \\ - -1 "\${read_1}" \\ - -2 "\${read_2}" \\ - --local \\ - --very-sensitive-local \\ - --phred33 \\ - -I 10 \\ - -X 700 \\ - --un-conc-gz "\${prefix}.unaligned" \\ - --al-conc-gz "${prefix}.aligned" \\ - | samtools sort -@ "\${SLURM_CPUS_ON_NODE}" -o "\${prefix}_sorted.bam" - -script - -sbatch submit-Bowtie-2.test-2.sh \ - "${genome_dir}" \ - "${read_1}" \ - "${read_2}" \ - "${prefix}" -``` - - -##### Alignment metrics for the *corrected* test run of Bowtie 2 -Remember, *corrected* means `Bowtie 2` was called without flags for removing unaligned and discordant reads, both of which were present in the first run -```txt -13988842 reads; of these: - 13988842 (100.00%) were paired; of these: - 552105 (3.95%) aligned concordantly 0 times - 7261264 (51.91%) aligned concordantly exactly 1 time - 6175473 (44.15%) aligned concordantly >1 times - ---- - 552105 pairs aligned concordantly 0 times; of these: - 119842 (21.71%) aligned discordantly 1 time - ---- - 432263 pairs aligned 0 times concordantly or discordantly; of these: - 864526 mates make up the pairs; of these: - 386601 (44.72%) aligned 0 times - 176417 (20.41%) aligned exactly 1 time - 301508 (34.88%) aligned >1 times -98.62% overall alignment -[bam_sort_core] merging from 8 files and 8 in-memory blocks... -``` - - -###### Thoughts on the alignment metrics for `Bowtie 2` (*corrected*) -- Very similar to the [previous run](#alignment-metrics-for-the-test-run-of-bowtie-2)... - - -###### Examine the flags in the `.bam` outfile from the *corrected* test run of `Bowtie 2` -Again, remember that *corrected* means `Bowtie 2` was called without flags for removing unaligned and discordant reads, both of which were present in the first run -```bash -#!/bin/bash -#DONTRUN - -# Have called grabnode with default/lowest settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" - -# First, a bit of clean-up -mv *.txt exp_alignment_Bowtie_2/ - -ml SAMtools/1.16.1-GCC-11.2.0 - -samtools flagstat \ - ./exp_alignment_Bowtie_2/files_bams/5781_G1_IN_merged_sorted.bam \ - > ./exp_alignment_Bowtie_2/files_bams/5781_G1_IN_merged_sorted.flagstat.txt -# 1. Readout from "correct" .bam (i.e., with correct parameters) -# 27977684 + 0 in total (QC-passed reads + QC-failed reads) -# 27977684 + 0 primary -# 0 + 0 secondary -# 0 + 0 supplementary -# 0 + 0 duplicates -# 0 + 0 primary duplicates -# 27591083 + 0 mapped (98.62% : N/A) -# 27591083 + 0 primary mapped (98.62% : N/A) -# 27977684 + 0 paired in sequencing -# 13988842 + 0 read1 -# 13988842 + 0 read2 -# 26873474 + 0 properly paired (96.05% : N/A) -# 27450096 + 0 with itself and mate mapped -# 140987 + 0 singletons (0.50% : N/A) -# 153696 + 0 with mate mapped to a different chr -# 65835 + 0 with mate mapped to a different chr (mapQ>=5) - -# 1. Readout from "uncorrect" .bam (i.e., with incorrect parameters; see -#+ above) -# 26167854 + 0 in total (QC-passed reads + QC-failed reads) -# 26167854 + 0 primary -# 0 + 0 secondary -# 0 + 0 supplementary -# 0 + 0 duplicates -# 0 + 0 primary duplicates -# 26167854 + 0 mapped (100.00% : N/A) -# 26167854 + 0 primary mapped (100.00% : N/A) -# 26167854 + 0 paired in sequencing -# 13083927 + 0 read1 -# 13083927 + 0 read2 -# 26167854 + 0 properly paired (100.00% : N/A) -# 26167854 + 0 with itself and mate mapped -# 0 + 0 singletons (0.00% : N/A) -# 0 + 0 with mate mapped to a different chr -# 0 + 0 with mate mapped to a different chr (mapQ>=5) - -calculate_run_time() { - # Calculate run time for chunk of code - # - # :param 1: start time in $(date +%s) format - # :param 2: end time in $(date +%s) format - # :param 3: message to be displayed when printing the run time (chr) - run_time="$(echo "${2}" - "${1}" | bc -l)" - - echo "" - echo "${3}" - printf 'Run time: %dh:%dm:%ds\n' \ - $(( run_time/3600 )) $(( run_time%3600/60 )) $(( run_time%60 )) - echo "" -} - - -display_spinning_icon() { - # Display "spinning icon" while a background process runs - # - # :param 1: PID of the last program the shell ran in the background (int) - # :param 2: message to be displayed next to the spinning icon (chr) - spin="/|\\–" - i=0 - while kill -0 "${1}" 2> /dev/null; do - i=$(( (i + 1) % 4 )) - printf "\r${spin:$i:1} %s" "${2}" - sleep .15 - done -} - - -list_tally_flags() { - # List and tally flags in a bam infile; function acts on a bam infile to - # perform piped commands (samtools view, cut, sort, uniq -c, sort -nr) that - # list and tally flags; function writes the results to a txt outfile, the - # name of which is derived from the txt infile - # - # :param 1: name of bam infile, including path (chr) - start="$(date +%s)" - - samtools view "${1}" \ - | cut -d$'\t' -f 2 \ - | sort \ - | uniq -c \ - | sort -nr \ - > "${1/.bam/.flags.txt}" & - display_spinning_icon $! \ - "Running piped commands (samtools view, cut, sort, uniq -c, sort -nr) on $(basename "${1}")... " - - end="$(date +%s)" - echo "" - calculate_run_time "${start}" "${end}" \ - "List and tally flags in $(basename "${1}")." -} - - -list_tally_flags exp_alignment_Bowtie_2/files_bams/5781_G1_IN_merged_sorted.bam - -samtools view -c \ - ./exp_alignment_Bowtie_2/files_bams/5781_G1_IN_merged_sorted.bam -# 27977684 - -# Numbers of records in the *_R{1,2}.fastq files -cd .. -echo $(cat ./files_fastq_symlinks/5781_G1_IN_merged_R1.fastq | wc -l)/4 | bc -# 13988842 -echo $(cat ./files_fastq_symlinks/5781_G1_IN_merged_R2.fastq | wc -l)/4 | bc -# 13988842 - -echo $(( 13988842 + 13988842 )) -# 27977684 - -# Multiply by the overall alignment rate: Is it equal to the number of records in the .bam file? -echo "27977684*0.9862" | bc -# 27591591.9608; rounds up to 27591592; rounds down to 27591591 - -# Numbers of records in the .bam and .fastq files *are* equivalent -#+ Great! -``` - -Contents of outfile from running `list_tally_flags` (with format edits and notes from me)... -```txt -7314425 83 -7314425 163 -6122312 99 -6122312 147 - 139372 97 - 139372 145 - 122807 77 unmapped (read, mate) - 122807 141 unmapped (read, mate) - 96792 81 - 96792 161 - 42776 89 unmapped (mate) - 42776 165 unmapped (read) - 40407 73 unmapped (mate) - 40407 133 unmapped (read) - 33323 65 - 33323 129 - 31296 153 unmapped (mate) - 31296 101 unmapped (read) - 26508 69 unmapped (read) - 26508 137 unmapped (mate) - 18824 177 on different chromosomes - 18824 113 on different chromosomes -``` -What are the meanings of these flags? Use [this tool](https://broadinstitute.github.io/picard/explain-flags.html) to check: -| flag | meaning | -| :--- | :----------------------------------------------------------------------------------------------------- | -| 83 | read paired (0x1), read mapped in proper pair (0x2), read reverse strand (0x10), first in pair (0x40) | -| 163 | read paired (0x1), read mapped in proper pair (0x2), mate reverse strand (0x20), second in pair (0x80) | -| 99 | read paired (0x1), read mapped in proper pair (0x2), mate reverse strand (0x20), first in pair (0x40) | -| 147 | read paired (0x1), read mapped in proper pair (0x2), read reverse strand (0x10), second in pair (0x80) | -| 97 | read paired (0x1), mate reverse strand (0x20), first in pair (0x40) | -| 145 | read paired (0x1), read reverse strand (0x10), second in pair (0x80) | -| 77 | read paired (0x1), read unmapped (0x4), mate unmapped (0x8), first in pair (0x40) | -| 141 | read paired (0x1), read unmapped (0x4), mate unmapped (0x8), second in pair (0x80) | -| 81 | read paired (0x1), read reverse strand (0x10), first in pair (0x40) | -| 161 | read paired (0x1), mate reverse strand (0x20), second in pair (0x80) | -| 89 | read paired (0x1), mate unmapped (0x8), read reverse strand (0x10), first in pair (0x40) | -| 165 | read paired (0x1), read unmapped (0x4), mate reverse strand (0x20), second in pair (0x80) | -| 73 | read paired (0x1), mate unmapped (0x8), first in pair (0x40) | -| 133 | read paired (0x1), read unmapped (0x4), second in pair (0x80) | -| 65 | read paired (0x1), first in pair (0x40) | -| 129 | read paired (0x1), second in pair (0x80) | -| 153 | read paired (0x1), mate unmapped (0x8), read reverse strand (0x10), second in pair (0x80) | -| 101 | read paired (0x1), read unmapped (0x4), mate reverse strand (0x20), first in pair (0x40) | -| 69 | read paired (0x1), read unmapped (0x4), first in pair (0x40) | -| 137 | read paired (0x1), mate unmapped (0x8), second in pair (0x80) | -| 177 | read paired (0x1), read reverse strand (0x10), mate reverse strand (0x20), second in pair (0x80) | -| 113 | read paired (0x1), read reverse strand (0x10), mate reverse strand (0x20), first in pair (0x40) | - -Do the above counts sum to 27977684? -```bash -#!/bin/bash -#DONTRUN - -echo $(( \ - 7314425 + \ - 7314425 + \ - 6122312 + \ - 6122312 + \ - 139372 + \ - 139372 + \ - 122807 + \ - 122807 + \ - 96792 + \ - 96792 + \ - 42776 + \ - 42776 + \ - 40407 + \ - 40407 + \ - 33323 + \ - 33323 + \ - 31296 + \ - 31296 + \ - 26508 + \ - 26508 + \ - 18824 + \ - 18824 \ -)) -# 27977684: Yes -``` -
-
- - -###### Examine the `.fastq` outfiles from the *corrected* test run of `Bowtie 2` -```bash -#!/bin/bash -#DONTRUN - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_alignment_Bowtie_2/files_bams" - -ls -lhaFG -# total 2.5G -# drwxrws--- 2 kalavatt 337 Nov 9 15:31 ./ -# drwxrws--- 3 kalavatt 160 Nov 9 15:23 ../ -# -rw-rw---- 1 kalavatt 427M Nov 8 16:24 5781_G1_IN_merged.1.aligned -# -rw-rw---- 1 kalavatt 19M Nov 8 16:24 5781_G1_IN_merged.1.unaligned -# -rw-rw---- 1 kalavatt 447M Nov 8 16:24 5781_G1_IN_merged.2.aligned -# -rw-rw---- 1 kalavatt 19M Nov 8 16:24 5781_G1_IN_merged.2.unaligned -# -rw-rw---- 1 kalavatt 942M Nov 8 16:24 5781_G1_IN_merged_sorted.bam -# -rw-rw---- 1 kalavatt 531 Nov 9 15:25 5781_G1_IN_merged_sorted.flagstat.txt -# -rw-rw---- 1 kalavatt 255 Nov 9 15:29 5781_G1_IN_merged_sorted.flags.txt - -# (The files are gzipped even though the extension is not present...) -echo $(zcat 5781_G1_IN_merged.1.aligned | wc -l)/4 | bc # 13436737 -echo $(zcat 5781_G1_IN_merged.2.aligned | wc -l)/4 | bc # 13436737 -echo $(zcat 5781_G1_IN_merged.1.unaligned | wc -l)/4 | bc # 552105 -echo $(zcat 5781_G1_IN_merged.2.unaligned | wc -l)/4 | bc # 552105 - -# Do the above counts sum to 27977684? -echo $(( 13436737 + 13436737 + 552105 + 552105 )) # 27977684: Yes -``` - - -###### `head` through the `.bam` outfile from the *corrected* test run of `Bowtie 2` -...to see if information for multimappers are present in the tags -```bash -#!/bin/bash -#DONTRUN - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_alignment_Bowtie_2/files_bams" - -samtools view -h 5781_G1_IN_merged_sorted.bam | less -``` - -Example output: -```txt -@HD VN:1.0 SO:coordinate -@SQ SN:I LN:230218 -@SQ SN:II LN:813184 -@SQ SN:III LN:316620 -@SQ SN:IV LN:1531933 -@SQ SN:V LN:576874 -@SQ SN:VI LN:270161 -@SQ SN:VII LN:1090940 -@SQ SN:VIII LN:562643 -@SQ SN:IX LN:439888 -@SQ SN:X LN:745751 -@SQ SN:XI LN:666816 -@SQ SN:XII LN:1078177 -@SQ SN:XIII LN:924431 -@SQ SN:XIV LN:784333 -@SQ SN:XV LN:1091291 -@SQ SN:XVI LN:948066 -@SQ SN:Mito LN:85779 -@SQ SN:A LN:1062590 -@SQ SN:B LN:1320834 -@SQ SN:C LN:1753957 -@SQ SN:D LN:1715506 -@SQ SN:E LN:2234072 -@SQ SN:F LN:2602197 -@SQ SN:20S LN:2514 -@PG ID:bowtie2 PN:bowtie2 VN:2.4.4 CL:"/app/software/Bowtie2/2.4.4-GCC-11.2.0/bin/bowtie2-align-s --wrapper basic-0 -p 8 -x /home/kalavatt/genomes/combined_SC_KL_20S/Bowtie2/combined_SC_KL_20S --local --very-sensitive-local --phred33 -I 10 -X 700 -- -@PG ID:samtools PN:samtools PP:bowtie2 VN:1.16.1 CL:samtools sort -@ 8 -o ./exp_alignment_Bowtie_2/files_bams/5781_G1_IN_merged_sorted.bam - -@PG ID:samtools.1 PN:samtools PP:samtools VN:1.16.1 CL:samtools view -h 5781_G1_IN_merged_sorted.bam -HISEQ:1007:HGV5NBCX3:1:1114:5228:88329 99 I 288 11 50M = 522 280 CTACTCACCATACTGTTGTTCTACCCACCATATTGAAACGCTAACAAATG GGGGGGGIIIIIIGIIIGGGIIIIIIIIIIIIGIGGIIIGIIIIIIIIIG AS:i:93 XS:i:92 XN:i:0 XM:i:1 XO:i:0 XG:i:0 NM:i:1 -HISEQ:1007:HGV5NBCX3:1:1114:5228:88329 147 I 522 11 4S46M = 288 -280 CTAGATGCACTCACATCATTATGCACGGCACTTGCCTCAGCGGTCTATAC GGGGGGGAIGGGGGGGIGGIIIGGGGGGGGGGIGGIIGIGGGGGIGGGGG AS:i:92 XS:i:100 XN:i:0 XM:i:0 XO:i:0 XG:i:0 -HISEQ:1007:HGV5NBCX3:1:2106:14749:35491 163 I 1663 1 7S43M = 1730 124 TTTTTTTTTGATCAAATAGGTCTATAATATTAATATACATTTATATAATC GGGGGIIII` or the flag `-a/--all` -```txt - -k report up to alns per read; MAPQ not meaningful --a/--all report all alignments; very slow, MAPQ not meaningful -``` - - -#### More thoughts on multimappers (2022-1109-1110, 1115) -The work and thinking here builds on the notes under the heading ["Thoughts on the alignment metrics for `STAR`"](#thoughts-on-the-alignment-metrics-for-star) -- `#DONE` What does the [`Trinity` Google Group](https://groups.google.com/g/trinityrnaseq-users) have to say about multimappers? - + `#ANSWER` Per Brian Haas at [this post](https://groups.google.com/g/trinityrnaseq-users/c/L4hypoWSk_o/m/bTO2L8ssAQAJ): "If reads are mapped to multiple genomic locations, then `Trinity` will use those reads as substrates for *de novo* assembly at each of the locations. This is important to do in the case of paralogs that share sequences in common." - * However, here, he's talking about genome-guided assembly; is this also the case for non-genome-guided assembly? - - ~~`#ANSWER` I would think so... What he says about potential paralogs seems like it holds true in this circumstance too~~ - - `#ANSWER` Actually, I don't think so: We would essentially be increasing the numbers of reads in our `.fastq` files: for example, our .bam files will contain multimappers after converting - - Actually, reach out to the `Trinity` Google group to ask about it - * `#CONCLUSION` ***Don't*** keep the multimappers and ***don't*** use them in draft-free *de novo* assembly of the transcriptome; consider using them in genome-guided assembly `#TBD` - - -##### Conversation with Brian Haas, author/maintainer of Trinity -[Message that I sent to the Trinity Google group (2022-1109)](https://groups.google.com/g/trinityrnaseq-users/c/DWctG7wLNYY/m/F4LmzJKyAQAJ): -```txt -Hi all, - -I am preparing to do a non-genome-guided transcriptome assembly for S. cerevisiae with Trinity (our yeast model has high levels of gene expression in unannotated parts of the genome, so that's why we are doing transcriptome assembly with an otherwise well-annotated organism). - -I am working with RNA-seq data that contain spike-in RNA from another yeast species. I filter this out by performing an initial alignment (with either Bowtie 2 or STAR) to a reference genome made up of S. cerevisiae and the other species. Using the resulting .bam file, I filter out alignments to the chromosomes of the other species. I also filter out unaligned reads (a relatively small percentage of reads: I wonder if I should just keep them in?). Then, I convert the filtered .bam (containing only S. cerevisiae alignments) to .fastq files (paired-end). I use these files as input to Trinity for non-genome-guided transcriptome assembly. - -There are many multimappers (multiple alignments per read) in my data. Based on the information in this previous post to the Trinity Google group (Genome-guided Trinity - reads mapping to multiple loci?), I am curious to know if I should report and keep the multiple alignments per read, not filter them from my .bam file, and in turn have them present in the converted .fastq files. This is because, if I understand correctly, these reads can be "substrates for de novo assembly at each of the locations" where they map, at least in genome-guided assembly. In practice, this will add duplicates to the .fastq files, so will this have the same effect with non-genome-guided assembly? - -What do you think? Any input will be greatly appreciated. - -Thanks, -Kris - -Link from above: -https://groups.google.com/g/trinityrnaseq-users/c/L4hypoWSk_o/m/bTO2L8ssAQAJ -``` - -[Response from Brian Haas](https://groups.google.com/g/trinityrnaseq-users/c/DWctG7wLNYY/m/RGn6ZH_fAQAJ), author/maintainer of `Trinity` (2022-1110): -```txt -Hi, - -The genome-guided assembly should use the multimapped reads in their different read clusters (based on genomic location), but the full de novo won't... they'll get put into the same initial big bag of reads. - -Based on your description, I'm not sure why you're not after doing the genome-guided de novo assembly. It seems like everything you're assembling is coming from alignments to the genome. The only reason this would not be a good idea is if you have unmapped reads that would provide more complete transcripts by incorporating them with the genome-aligned ones. The problem with the unmapped reads is that you wouldn't know which read clusters they should go into. - -You could try something like this: -https://github.com/PASApipeline/PASApipeline/wiki/PASA_comprehensive_db - -It's kind of a pain to run but can be worth it. It'll take both the genome-free and the genome-based de novo assemblies as input and should deal with the unmapped reads too (given the full de novo). - -Hope this helps. Just write again if I missed something here. - -Best, - -~b -``` - -It seems that genome-guided *de novo* assembly is an approach that I must try, either exclusively or in addition to non-genome-guided assembly. - -An interpretation: It is unusual to use the non-genome-guided assembly approach as described since my starting material are coming from alignments to the genome. I guess my thinking was/is to use the alignments in `.fastq`, ignoring the knowledge that they come from (because they are filtered via) alignments to the genome. If I decide to try non-genome-guided assembly, I should not include multimappers and, instead, include only (**a**) alignments to *S. cerevisiae* and (**b**) unmapped reads. - -Perhaps I will set up an experiment to test (**a**) genome-guided assembly using `PASA` versus (**b**) non-genome-guided assembly roughly following the approach of [McIlwain et al.](#mcilwain-et-al-hittinger-g3-2016) (and this approach will also influence how I validate genome-guided assembly). - -`#IMPORTANT` Include the materials at the link mentioned by Brian in the ["References for the experimental design/pipeline"](#references-for-the-experimental-designpipeline). Put your notes on the link materials up there too. - -[My response and question](https://groups.google.com/g/trinityrnaseq-users/c/DWctG7wLNYY/m/sq6sV0biAwAJ) to Brian after having studied his suggestion and materials (see [above](#references-for-the-experimental-designpipeline); 2022-1110): -```txt -Thank you, yes, that helps, and I am studying up on what you suggested. - -Just to be clear, to take advantage of multimapper information when running genome-guided Trinity, I should use as a bam infile in which all multimappers are retained (for example, from calling Bowtie 2 with the -k flag to keep number of alignments per read)—is that correct? - -Best, -Kris -``` - -[His response](#references-for-the-experimental-designpipeline) (2022-1110): -```txt -The genome-guided mode leverages multimapped reads and the main benefit is that it uses the genome to inform how to group the reads into loci-based clusters, instead of having to do it genome-free based on kmer composition, etc. - -For genome alignments, you'll want to use STAR or HISAT when using RNA-seq data as input. - -Best, - -~brian -``` -He doesn't directly address the question, Should I use "a bam infile in which all multimappers are retained?" Answer seems to be yes, though. - - -##### Material on multimappers from the `STAR` documentation - -###### 4.1 Multimappers. -The output of multimappers (i.e., reads mapping to multiple loci) is controlled by `--outFilterMultimapNmax N`. By default, `N=10`. If a read maps to *less than or equal to `N` loci*, it will be output; otherwise, it will be considered unmapped and reported as "Multimapping: mapped to too many loci" in the `Log.final.out` summary statistics file. - -The detection of multimappers is controlled by `--winAnchorMultimapNmax` option, `=50` by default. This parameter should be set to at least the number of multimapping loci, i.e. `--winAnchorMultimapNmax` should be greater than or equal to `--outFilterMultimapNmax`. Note that this parameter also controls the overall sensitivity of mapping: increasing it will change (improve) the mapping of unique mappers as well, though at the cost of slower speed. - - -###### 5.2.1 Multimappers. -The number of loci `Nmap` a read maps to is given by `NH:i:Nmap` field. Value of 1 corresponds to unique mappers, while values >1 corresponds to multimappers. `HI` attributes enumerates multiple alignments of a read starting with 1 (this can be changed with the `--outSAMattrIHstart`; setting it to 0 may be required for compatibility with downstream software such as `Cufflinks`). - -The mapping quality `MAPQ` (column 5) is `255` for uniquely mapping reads, and int(-10\*log10(1 - 1/`Nmap`)) for multi-mapping reads. This scheme is same as the one used by `TopHat` and is compatible with `Cufflinks`. The default `MAPQ=255` for the unique mappers may be changed with `--outSAMmapqUnique` parameter (integer 0 to 255) to ensure compatibility with downstream tools such as `GATK`. - -For multimappers, all alignments except one are marked with `0x100` (secondary alignment) in the `FLAG` (column 2 of the SAM). The unmarked alignment is selected from the best ones (i.e., highest scoring). This default behavior can be changed with the `--outSAMprimaryFlag AllBestScore` option, which will output all alignments with the best score as primary alignments (i.e., `0x100` bit in the `FLAG` unset). - -By default, the order of the multi-mapping alignments for each read is not truly random. The `--outMultimapperOrder Random` option outputs multiple alignments for each read in random order, and also also randomizes the choice of the primary alignment from the highest scoring alignments. Parameter `--runRNGseed` can be used to set the random generator seed. With this option, the ordering of multi-mapping alignments of each read, and the choice of the primary alignment will vary from run to run, unless only one thread is used and the seed is kept constant. - -The `--outSAMmultNmax` parameter limits the number of output alignments (SAM lines) for multimappers. For instance, --outSAMmultNmax 1 will output exactly one SAM line for each mapped read. Note that `NH:i:` tag in STAR will still report the actual number of loci that the reads map to, while the the number of reported alignments for a read in the SAM file is `min(NH,--outSAMmultNMax)`. If `--outSAMmultNmax` is equal to `-1`, all the alignments are output according to the order specified in the `--outMultimapperOrder` option. If `--outSAMmultNmax` is not equal to `-1`, then top-scoring alignments will always be output first, even for the default `--outMultimapperOrder Old 2.4` option. - - -##### Mapping parameters used in [Teissandier et al., *Mobile DNA* 2019](https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-019-0192-1) - -###### Unique mode -```bash ---runThreadN 4 \ ---outSAMtype BAM SortedByCoordinate \ ---runMode alignReads \ ---outFilterMultimapNmax 1 \ ---outFilterMismatchNmax 3 \ ---alignEndsType EndToEnd \ ---alignIntronMax 1 \ ---alignMatesGapMax 350 -``` - - -###### Random mode -```bash ---runThreadN 4 \ ---outSAMtype BAM SortedByCoordinate \ ---runMode alignReads \ ---outFilterMultimapNmax 1000 \ ---outSAMmultNmax 1 \ ---outFilterMismatchNmax 3 \ ---outMultimapperOrder Random \ ---winAnchorMultimapNmax 1000 \ ---alignEndsType EndToEnd \ ---alignIntronMax 1 \ ---alignMatesGapMax 350 -``` - - -###### Multi-hit mode -```bash ---runThreadN 4 \ ---outSAMtype BAM SortedByCoordinate \ ---runMode alignReads \ ---outFilterMultimapNmax 1000 \ ---outFilterMismatchNmax 3 \ ---outMultimapperOrder Random \ ---winAnchorMultimapNmax 1000 \ ---alignEndsType EndToEnd \ ---alignIntronMax 1 \ ---alignMatesGapMax 350 -``` - - -##### Meaning of the `STAR` parameters for Teissandier-styled alignment -```txt ---runThreadN - option defines the number of threads to be used for genome generation, it has to - be set to the number of available cores on the server node - - int: number of threads to run STAR - ---outSAMtype BAM Unsorted - output unsorted Aligned.out.bam file. The paired ends of an alignment are always - adjacent, and multiple alignments of a read are adjacent as well; this ”unsorted” - file can be directly used with downstream software such as HTseq, without the - need of name sorting; the order of the reads will match that of the input - FASTQ(A) files only if one thread is used --runThread 1, and --outFilterType - --BySJout is not used - ---outSAMtype BAM SortedByCoordinate - output sorted by coordinate Aligned.sortedByCoord.out.bam file, similar to - samtools sort command; if this option causes problems, it is recommended to - reduce --outBAMsortingThreadN from the default 6 to lower values (as low as 1) - ---outSAMtype BAM Unsorted SortedByCoordinate - output both unsorted and sorted files - - default: SAM - - strings: type of SAM/BAM output - - 1st word: - BAM - output of BAM without sorting - SAM - output of SAM without sorting - None - no SAM/BAM output - - 2nd, 3rd: - Unsorted - standard unsorted - SortedByCoordinate - sorted by coordinate; this option will allocate extra memory for - sorting which can be specified by --limitBAMsortRAM - ---runMode alignReads - default: alignReads - - string: type of the run - - alignReads - map reads - genomeGenerate - generate genome files - inputAlignmentsFromBAM - input alignments from BAM; presently only works with --outWigType and - --bamRemoveDuplicates options - liftOver - lift-over of GTF files (-–sjdbGTFfile) between genome assemblies using - chain file(s) from -–genomeChainFiles - soloCellFiltering - STARsolo cell filtering (”calling”) without remapping, followed by the path - to raw count directory and output (filtered) prefix - ---outFilterMultimapNmax - max number of multiple alignments allowed for a read: if exceeded, the read is - considered unmapped - - default: 10 - - int: maximum number of loci the read is allowed to map to; alignments (all of - them) will be output only if the read maps to no more loci than this value - ---outSAMmultNmax - default: -1 - - int: max number of multiple alignments for a read that will be output to the - SAM/BAM files; note that if this value is not equal to -1, the top scoring - alignment will be output first - - all alignments (up to -–outFilterMultimapNmax) will be output - ---outFilterMismatchNmax - maximum number of mismatches per pair, large number switches off this filter - - default: 10 - - int: alignment will be output only if it has no more mismatches than this value. - ---outMultimapperOrder - default: Old 2.4 - - string: order of multimapping alignments in the output files - - Old_2.4 - quasi-random order used before 2.5.0 - Random - random order of alignments for each multimapper; read mates (pairs) are - always adjacent, and all alignment for each read stay together; this - option will become default in the future releases - ---winAnchorMultimapNmax - default: 50 - - int>0: max number of loci anchors are allowed to map to - ---alignEndsType - default: Local - - string: type of read ends alignment - - Local - standard local alignment with soft-clipping allowed - EndToEnd - force end-to-end read alignment, do not soft-clip - Extend5pOfRead1 - fully extend only the 5p of the read1, all other ends: local alignment - Extend5pOfReads12 - fully extend only the 5p of the both read1 and read2, all other ends: - local alignment - ---alignIntronMax - maximum intron length - - default: 0 - - maximum intron size, if 0, max intron size will be determined by - (2^winBinNbits)*winAnchorDistNbins - ---alignMatesGapMax - maximum genomic distance between mates - - default: 0 - - maximum gap between two mates, if 0, max intron gap will be determined by - (2^winBinNbits)*winAnchorDistNbins - - -# Parameters related to '--outFilterMultimapNmax', --alignIntronMax, --alignMatesGapMax ------ ---limitOutSAMoneReadBytes - default: 100000 - - int>0: max size of the SAM record (bytes) for one read. Recommended value: - >(2*(LengthMate1+LengthMate2+100)*outFilterMultimapNmax - ---outSJfilterIntronMaxVsReadN - default: 50000 100000 200000 - - N integers>=0: maximum gap allowed for junctions supported by 1,2,3,,,N reads - - i.e. by default junctions supported by 1 read can have gaps <=50000b, by 2 reads: - <=100000b, by 3 reads: <=200000. by >=4 reads any gap <=alignIntronMax - - does not apply to annotated junctions - ---winBinNbits - default: 16 - - int>0: =log2(winBin), where winBin is the size of the bin for the - windows/clustering, each window will occupy an integer number of bins - ---winAnchorDistNbins - default: 9 - - int>0: max number of bins between two anchors that allows aggregation of anchors - into one window -``` - - -##### How we called `STAR` previously (based on ['rna-star' post](https://groups.google.com/g/rna-star/c/hQeHTBbkc0c), not retaining multimappers) vs. multi-hit mode - -###### Previous (based on ['rna-star' post](https://groups.google.com/g/rna-star/c/hQeHTBbkc0c)): -```bash -STAR \ - --runThreadN "${SLURM_CPUS_ON_NODE}" \ - --outSAMtype BAM SortedByCoordinate \ - --outSAMunmapped Within \ - --genomeDir "${genome_dir}" \ - --readFilesIn "${read_1}" "${read_2}" \ - --outFileNamePrefix "${prefix}" \ - --limitBAMsortRAM 4000000000 \ - --outFilterMultimapNmax 1 \ - --alignSJoverhangMin 8 \ - --alignSJDBoverhangMin 1 \ - --outFilterMismatchNmax 999 \ - --alignIntronMin 4 \ - --alignIntronMax 5000 \ - --alignMatesGapMax 5000 -``` - - -###### Multi-hit mode: -```bash ---runThreadN 4 \ ---outSAMtype BAM SortedByCoordinate \ ---runMode alignReads \ ---outFilterMultimapNmax 1000 \ ---outFilterMismatchNmax 3 \ ---outMultimapperOrder Random \ ---winAnchorMultimapNmax 1000 \ ---alignEndsType EndToEnd \ ---alignIntronMax 1 \ ---alignMatesGapMax 350 -``` - - -###### Going through the parameters, making comparisons between the two approaches: -```txt ---outFilterMultimapNmax - # --------------------------------------------------- - 'rna-star' parameters 1 - multi-hit mode 1000 - # --------------------------------------------------- - maximum number of loci the read is allowed to map to; alignments (all of them) will be - output only if the read maps to no more loci than this value; otherwise no alignments will - be output, and the read will be counted as "mapped to too many loci" in the Log.final.out - - < format: int; default: 10 > - - ---alignSJoverhangMin - # --------------------------------------------------- - 'rna-star' parameters 8 - multi-hit mode 5 (default) - # --------------------------------------------------- - minimum overhang (i.e. block size) for spliced alignments - - < format: int>0; default: 5 > - - ---alignSJDBoverhangMin - # --------------------------------------------------- - 'rna-star' parameters 1 - multi-hit mode 3 (default) - # --------------------------------------------------- - minimum overhang (i.e., block size) for annotated (sjdb) spliced alignments - - < format: int>0; default: 3 > - - ---outFilterMismatchNmax - # --------------------------------------------------- - 'rna-star' parameters 999 - multi-hit mode 3 - # --------------------------------------------------- - alignment will be output only if it has no more mismatches than this value - - < format: int; default: 10 > - - ---outMultimapperOrder - # --------------------------------------------------- - 'rna-star' parameters Old_2.4 (default) - multi-hit mode Random - # --------------------------------------------------- - order of multimapping alignments in the output files - - < default: Old_2.4 > - - ---winAnchorMultimapNmax - # --------------------------------------------------- - 'rna-star' parameters 50 (default) - multi-hit mode 1000* - - *(set to the same value as --outFilterMultimapNmax) - # --------------------------------------------------- - - ---alignEndsType - # --------------------------------------------------- - 'rna-star' parameters Local* (default) - multi-hit mode EndToEnd* - - *(Local: standard local alignment with soft-clipping allowed) - *(EndToEnd: force end-to-end read alignment, do not soft-clip) - # --------------------------------------------------- - string: type of read ends alignment - Local - standard local alignment with soft-clipping allowed - EndToEnd - force end-to-end read alignment, do not soft-clip - Extend5pOfRead1 - fully extend only the 5p of the read1, all other ends: local alignment - Extend5pOfReads12 - fully extend only the 5p of the both read1 and read2, all other ends: local - alignment - - < default: Local > - - ---alignIntronMin - # --------------------------------------------------- - 'rna-star' parameters 4 - multi-hit mode 21 (default) - # --------------------------------------------------- - minimum intron size: genomic gap is considered intron if its length>=alignIntronMin, - otherwise it is considered Deletion - - < default: 21 > - - ---alignIntronMax - # --------------------------------------------------- - 'rna-star' parameters 5000 - multi-hit mode 0 (default) - # --------------------------------------------------- - maximum intron size, if 0, max intron size will be determined by - (2^winBinNbits)*winAnchorDistNbins - - < default: 0 > - - ---alignMatesGapMax - # --------------------------------------------------- - 'rna-star' parameters 5000 - multi-hit mode 350 - # --------------------------------------------------- - maximum gap between two mates, if 0, max intron gap will be determined by - (2^winBinNbits)*winAnchorDistNbins - - < default: 0 > -``` - - -###### Assessing the "ingredients" -```txt ---outFilterMultimapNmax - # --------------------------------------------------- - 'rna-star' parameters 1 - multi-hit mode 1000 - # --------------------------------------------------- - ---alignSJoverhangMin - # --------------------------------------------------- - 'rna-star' parameters 8 - multi-hit mode 5 (default) - # --------------------------------------------------- - ---alignSJDBoverhangMin - # --------------------------------------------------- - 'rna-star' parameters 1 - multi-hit mode 3 (default) - # --------------------------------------------------- - ---outFilterMismatchNmax - # --------------------------------------------------- - 'rna-star' parameters 999 - multi-hit mode 3 - # --------------------------------------------------- - ---outMultimapperOrder - # --------------------------------------------------- - 'rna-star' parameters Old_2.4 (default) - multi-hit mode Random - # --------------------------------------------------- - ---winAnchorMultimapNmax - # --------------------------------------------------- - 'rna-star' parameters 50 (default) - multi-hit mode 1000* - - *(set to the same value as --outFilterMultimapNmax) - # --------------------------------------------------- - ---alignEndsType - # --------------------------------------------------- - 'rna-star' parameters Local* (default) - multi-hit mode EndToEnd* - - *(Local: standard local alignment with soft-clipping allowed) - *(EndToEnd: force end-to-end read alignment, do not soft-clip) - # --------------------------------------------------- - ---alignIntronMin - # --------------------------------------------------- - 'rna-star' parameters 4 - multi-hit mode 21 (default) - # --------------------------------------------------- - ---alignIntronMax - # --------------------------------------------------- - 'rna-star' parameters 5000 - multi-hit mode 0 (default) - # --------------------------------------------------- - ---alignMatesGapMax - # --------------------------------------------------- - 'rna-star' parameters 5000 - multi-hit mode 350 - # --------------------------------------------------- -``` - - -##### How we should call `STAR` taking into account 'rna-star' and multi-hit mode parameters -```bash -# Combination of Teissandier et al. multi-hit mode and 'rna-star' parameters -#+ for aligning yeast paired-end reads to S. cerevisiae and/or a combined- -#+ reference genome made up of S. cerevisiae, K. lactis, and S20 references -STAR \ - --runMode alignReads \ - --runThreadN "${SLURM_CPUS_ON_NODE}" \ - --outSAMtype BAM SortedByCoordinate \ - --outSAMunmapped Within \ - --genomeDir "${genome_dir}" \ - --readFilesIn "${read_1}" "${read_2}" \ - --outFileNamePrefix "${prefix}" \ - --limitBAMsortRAM 4000000000 \ - --outFilterMultimapNmax 1000 \ - --winAnchorMultimapNmax 1000 \ - --alignSJoverhangMin 8 \ - --alignSJDBoverhangMin 1 \ - --outFilterMismatchNmax 999 \ - --outMultimapperOrder Random \ - --alignEndsType EndToEnd \ - --alignIntronMin 4 \ - --alignIntronMax 5000 \ - --alignMatesGapMax 5000 -``` - - -#### How are other groups calling `STAR` with *S. cerevisiae*? -One thing that is weird about [the 'rna-star' approach](https://groups.google.com/g/rna-star/c/hQeHTBbkc0c) is the very liberal allowance of mismatches: `--outFilterMismatchNmax 999`; why? - -From the `STAR` manual: `int: alignment will be output only if its ratio of mismatches to mapped length is less than this value`; also, in the ENCODE RNA-seq mapping pipeline, `--outFilterMismatchNmax 999`; essentially, they don't want to filter out alignments (at least, at this stage) based on mismatches - -I did a [Google search for "outFilterMismatchNmax yeast"](https://www.google.com/search?q=outFilterMismatchNmax+yeast&oq=outFilterMismatchNmax+yeast&aqs=chrome..69i57j33i160l2.1850j0j7&sourceid=chrome&ie=UTF-8) and found `STAR` parameters for *S. cerevisiae* in several publications: - - -##### [Dorfel et al. (Lyon), Yeast 2017](https://onlinelibrary.wiley.com/doi/full/10.1002/yea.3211) -**RNA-Seq** -Total RNA was purified according to the RiboZero Gold Kit (Epicentre) and the RNA Clean and Concentration Kit (Zymo Resaearch). Libraries were generated, PCR amplified, purified using the Agencourt AMPure XP system (Beckman Coulter) and characterized on a high-sensitivity DNA assay (Agilent). The libraries were sequenced on the Illumina NextSeq platform in high-output mode, resulting in 76 single-end reads. For quality control, we used `FastQC (v0.11.3)` to generate diagnostic statistics of the data and used `Fastx (version 0.1)` to remove low-quality reads. Then we used `cutadapt (v1.7.1)` to identify and remove 3' adapter sequence (AGATCGGAAGAGCACACGTCT) from the reads, and clip the first base from the 5' end (options: `-O 6` `-m 25` `-n 1` `-e 0.15` `--cut 1`). `Bowtie (v1.1-1)` was used to identify and remove rRNA reads (option: `--seedlen = 23`). We used `STAR (v2.4.0j)` to align the RNA-Seq reads to the *S. cerevisiae* reference genome S288C (release R64-2-1) (options for `STAR`: `--outSAMstrandField intronMotif` `--outSAMunmapped Within` `--outFilterType BySJout` `--outFilterMultimapNmax 20` `--alignSJoverhangMin 8` `--alignSJDBoverhangMin 1` `--outFilterMismatchNmax 999` `--outFilterMismatchNoverLmax 0.04` `--alignIntronMin 0` `--alignIntronMax 5000` `--alignMatesGapMax 5000` `--outSAMattributes NH HI AS NM MD` `--outSAMtype BAM SortedByCoordinate` `--outFilterIntronMotifs RemoveNoncanonical`). `Cufflinks (v2.2.1)` was used to quantify RNA abundance at the gene level. We used `DESeq2` to perform differential expression analysis, comparing the following combinations: knock-out vs. wild type (WT), hNAA10 vs. WT, and hNAA10S37P vs. WT. Only genes with Benjamini–Hochberg-adjusted p-values <0.05 and log2 fold changes >1 or −1 are considered significantly differentially expressed. Telomeric regions are defined by taking the distal 40 kb regions of either end of the chromosomes. -```txt ---outSAMstrandField intronMotif \ ---outSAMunmapped Within \ ---outFilterType BySJout \ ---outFilterMultimapNmax 20 \ ---alignSJoverhangMin 8 \ ---alignSJDBoverhangMin 1 \ ---outFilterMismatchNmax 999 \ ---outFilterMismatchNoverLmax 0.04 \ ---alignIntronMin 0 \ ---alignIntronMax 5000 \ ---alignMatesGapMax 5000 \ ---outSAMattributes NH HI AS NM MD \ ---outSAMtype BAM SortedByCoordinate \ ---outFilterIntronMotifs RemoveNoncanonical -``` -```txt -My notes on the above: Above parameters are similar to the 'rna-star' parameters - - --outSAMstrandField intronMotif; see pp. 13, 20, 35 - - --outFilterType BySJout reduces the number of "spurious" junctions; one of the options - used in the ENCODE RNA-seq pipeline; see p. 9 of STAR manual - - manual, p. 42: - Normal standard filtering using only current alignment - BySJout keep only those reads that contain junctions that passed - filtering into SJ.out.tab - ---outFilterMismatchNoverLmax real: alignment will be output only if its ratio of mismatches to - *mapped* length is less than or equal to this value - - --outFilterIntronMotifs RemoveNoncanonical is recommended Cufflinks usage; more info on - pp. 43-44 of the STAR manual - - --outSAMattributes NH HI AS NM MD - NH number of loci the reads maps to: = 1 for unique mappers, > 1 for - multimappers; standard SAM tag - HI multiple alignment index, starts with -–outSAMattrIHstart (= 1 by - default); standard SAM tag - AS local alignment score, +1/ − 1 for matches/mismateches, score - penalties for indels and gaps; for PE reads, total score for two - mates; standard SAM tag - NM edit distance to the reference (number of mismatched + inserted + - deleted bases) for each mate; standard SAM tag - MD string encoding mismatched and deleted reference bases (see - standard SAM specifications); standard SAM tag -``` - -##### [Jensen et al. (Jensen), *Nat Comm* 2022](https://www.nature.com/articles/s41467-022-33961-y) -**Transcriptome analysis** -All the raw sequencing reads were trimmed using `Trimmomatic` (46) to filter sequencing adapters and low-quality reads. The clean reads were aligned against yeast reference genome using `STAR` (47) with the parameters: "`--outFilterMultimapNmax 100` `--alignSJoverhangMin 8` `--alignSJDBoverhangMin 1` `--outFilterMismatchNmax 999` `--alignIntronMax 5000` `--alignMatesGapMax 5000` `--outSAMtype BAM Unsorted`". The genome reference and gene annotations of *Saccharomyces cerevisiae* (R64-1-1) were obtained from Ensembl. We used `HTSeq-count` (48) to calculate raw counts for each yeast gene, with the parameter "`-s reverse`" to specify the strand information of reads. We applied the TMM (trimmed mean of M values) method (49) implemented in `edgeR` package to normalize gene expressions. The TMM normalized RPKM (Reads Per Kilobase of transcript, per Million mapped reads) values were further log2 transformed to generate heatmaps and other plots using `pheatmap` and `ggplot2` (50). -```txt ---outFilterMultimapNmax 100 \ ---alignSJoverhangMin 8 \ ---alignSJDBoverhangMin 1 \ ---outFilterMismatchNmax 999 \ ---alignIntronMax 5000 \ ---alignMatesGapMax 5000 \ ---outSAMtype BAM Unsorted -``` - -```txt -My notes on the above: Above parameters are similar to the 'rna-star' parameters -``` - -##### [Software and parameter settings used by OneStopRNAseq v1.0.0](https://mccb.umassmed.edu/OneStopRNAseq/about.php) -`#NOTE` An interesting site; e.g., provides parameters for `rMATS`, `GSEA`, `deepTools bamCoverage`, etc.; keep an eye on this... -```bash -STAR \ - --runThreadN {threads} \ - --genomeDir {INDEX} \ - --sjdbGTFfile {gtf} \ - --readFilesCommand zcat \ - --readFilesIn {reads} \ - --outFileNamePrefix {name} \ - --outFilterType BySJout \ - --outMultimapperOrder Random \ - --outFilterMultimapNmax 200 \ - --alignSJoverhangMin 8 \ - --alignSJDBoverhangMin 3 \ - --outFilterMismatchNmax 999 \ - --outFilterMismatchNoverReadLmax 0.05 \ - --alignIntronMin 20 \ - --alignIntronMax 1000000 \ - --outFilterIntronMotifs RemoveNoncanonicalUnannotated \ - --outSAMstrandField None \ - --outSAMtype BAM Unsorted \ - --quantMode GeneCounts \ - --outReadsUnmapped Fastx -``` -```txt ---outReadsUnmapped Fastx outputs unmapped reads into separate file(s) Unmapped.out.mate1[2], - formatted the same way as input read files (i.e. FASTQ or FASTA); for - paired-end reads, if a read maps as a whole, but one of the mates - does not map, both mates will also be output in Unmapped.out.mate1/2 - files; to indicate the mapping status of the read mates, the - following tags are appended to the read name: - 00 mates were not mapped; - 10 1st mate mapped, 2nd unmapped - 01 1st mate unmapped, 2nd mapped -``` - -##### [Mendoza et al., *Sci Adv* 2022](https://www.science.org/doi/10.1126/sciadv.abj5688?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed) -**RNA-seq analysis** -All RNA-seq data were prepared for analysis as follows. `NextSeq` sequencing data were demultiplexed using native applications on `BaseSpace`. Demultiplexed FASTQs were aligned by `RNA-STAR v.2.5.2` to the assembly `sacCer3` (parameters `--outFilterType BySJout` `--outFilterMultimapNmax 20` `--alignSJoverhangMin 8` `--alignSJDBoverhangMin 1` `--outFilterMismatchNmax 999` `--alignIntronMin 20` `--alignIntronMax 1000000`). Aligned reads were mapped to genomic features using `HTSeq v.0.6.1` after merging lanes of `NextSeq` (parameters `-r pos` `-s no` `-t exon` `-i gene_id`). Quantification, library size adjustment, and analysis of differential gene expression were done using DESeq2 and Wald’s test. Overlaps between lists of genes were tested for significance using a hypergeometric test (`phyper()` in R). -```txt ---outFilterType BySJout \ ---outFilterMultimapNmax 20 \ ---alignSJoverhangMin 8 \ ---alignSJDBoverhangMin 1 \ ---outFilterMismatchNmax 999 \ ---alignIntronMin 20 \ ---alignIntronMax 1000000 -``` - -##### [VELCRO-IP RNA-seq Data Analysis: Read Alignment and Quantification](https://bio-protocol.org/exchange/minidetail?type=30&id=10130019&utm_source=miniprotocol) -First, for removal of adaptor sequences, low quality bases, and short reads, we use `cutadapt` (Martin, 2011) to trim Illumina adaptor sequences and < Q20 bases. Reads < 40 nt were removed. Parameters: `cutadapt` `-m 40` `-a AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC` `-A AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT` `–nextseq-trim=20`. Next, for UMI extraction, we used `umi_tools` (Smith et al., 2017) to extract the UMI region (first 8 bases). Parameters: `umi_tools` `extract` `-–bc-pattern=NNNNNNNN` `-–bc-pattern2=NNNNNNNN`. We additionally remove 1 base from 5' end of the reads, which is the A/T nucleotide overhang from the ligation reaction during library preparation. For splice-aware alignment using `STAR` (Dobin et al., 2013), we used `STAR` to align the reads to a reference genome/transcriptome. `STAR` reference is built using a combination of yeast genome (sacCer3), mouse genome (mm10), mouse rDNA sequence (GenBank: GU372691), and mouse transcript annotations (GENCODE vM18). Only uniquely mapped reads were retained. Parameters: `STAR` `--sjdbOverhang 66` `--outFilterMultimapNmax 1` `--alignEndsType EndToEnd` `--alignIntronMax 1000000` `--alignMatesGapMax 1000000` `--alignIntronMin 20` `--outFilterMismatchNmax 999` `--alignSJDBoverhangMin 1` `--alignSJoverhangMin 8` `--outFilterType BySJout`. While the majority of the reads mapped to yeast mRNAs that we believe reflect background binding from the initial ribosome-IP (~20 million reads), 1–3% mapped to mouse mRNAs which corresponds to ~500,000 reads per sample. For deduplication using UMI, we used `umi_tools` to deduplicate the alignments. Deduplicated alignments are re-aligned using `STAR` and the same parameters as before. Parameters: `umi_tools` `dedup` `-–paired` `-–buffer-whole-contig`. For read quantification, we used `bedtools` (Quinlan and Hall, 2010) to count alignments over 200 nt sliding windows with step size of 100 nt across mouse genome. - - -##### Osman et al. (Cramer), *JBC* 2021 -[Link to the paper](https://www.jbc.org/article/S0021-9258(21)00523-8/pdf) -**4tU-seq and bioinformatics analysis** -... Cultures were then divided into four smaller cultures of 40 ml each and treated with either 1-NA-PP1 (40 mM in DMSO) to a final concentration of 6μM (two replicates), or an equal volume of DMSO (two replicates), and incubated for 12 min, followed by 5 min of 4tU labeling. 4tU labeling and subsequent extraction of labeled RNA was performed as described (82). For the heat shock experiment, a 300 ml culture was grown in the same way. The culture was then divided into two 140 ml cultures, to which either 1-NA-PP1 or DMSO was added in the same way as described for the steady-state growth experiment and incubated for 12 min. About 100 ml from each culture was diluted with 100 ml of 37 C warm media to exert heat shock. About 80 ml were extracted after 12 min of heat shock and labeled with 4tU for 5 min. The entire experiment was carried out in the same way twice to obtain two replicates. 4tU-Seq data analysis was performed (82) but with minor modifications. Briefly, the raw `fastq` files of paired-end 75 base reads (for steady-state experiment) and 42 base reads (for heat shock experiment) with additional six base reads of barcodes were obtained for each of the samples. Reads were demultiplexed, and low-quality bases (\ -#### Run `STAR` alignment, retaining multimappers (2022-1115-1116) -```bash -#!/bin/bash -#DONTRUN - -# grabnode has been called with default/lowest settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" -mkdir -p exp_alignment_STAR_multi-hit/files_bams - -# Find and list .fastq files; designate the 'prefix' and other variables -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find . \ - -type l \ - -name *578*merged*.fastq \ - -print0 \ - | sort -z \ -) -# Some checks... -for i in "${infiles[@]}"; do echo "${i}"; done && echo "" -for i in "${infiles[@]}"; do echo "$(basename "${i}")"; done && echo -for i in "${infiles[@]}"; do echo "$(basename "${i%_R?.fastq}")"; done && echo "" - -echo "${infiles[0]}" && echo "" -echo "${infiles[1]}" && echo "" -echo "$(basename "${infiles[0]%_R?.fastq}")" && echo "" - -read_1="${infiles[0]}" -read_2="${infiles[1]}" -prefix="./exp_alignment_STAR_multi-hit/files_bams/$(basename "${read_1%_R?.fastq}")" -genome_dir="${HOME}/genomes/combined_SC_KL_20S/STAR" - -echo "${genome_dir}" -echo "${read_1}" -echo "${read_2}" -echo "${prefix}" -#NOTE #REMEMBER "IP" = Nascent, "IN" = SteadyState - -# Run the alignment -if [[ -f "./submit-STAR-alignReads-multi-hit.sh" ]]; then - rm "./submit-STAR-alignReads-multi-hit.sh" -fi - -cat << script > "./submit-STAR-alignReads-multi-hit.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -# submit-STAR-alignReads-multi-hit.sh -# KA - -module load STAR/2.7.9a-GCC-11.2.0 - -genome_dir="\${1}" -read_1="\${2}" -read_2="\${3}" -prefix="\${4}" - -STAR \\ - --runMode alignReads \\ - --runThreadN "\${SLURM_CPUS_ON_NODE}" \\ - --outSAMtype BAM SortedByCoordinate \\ - --outSAMunmapped Within \\ - --genomeDir "\${genome_dir}" \\ - --readFilesIn "\${read_1}" "\${read_2}" \\ - --outFileNamePrefix "\${prefix}" \\ - --limitBAMsortRAM 4000000000 \\ - --outFilterMultimapNmax 1000 \\ - --winAnchorMultimapNmax 1000 \\ - --alignSJoverhangMin 8 \\ - --alignSJDBoverhangMin 1 \\ - --outFilterMismatchNmax 999 \\ - --outMultimapperOrder Random \\ - --alignEndsType EndToEnd \\ - --alignIntronMin 4 \\ - --alignIntronMax 5000 \\ - --alignMatesGapMax 5000 -script - -sbatch submit-STAR-alignReads-multi-hit.sh \ - "${genome_dir}" \ - "${read_1}" \ - "${read_2}" \ - "${prefix}" -``` - - -##### Alignment metrics for the test run of `STAR` (multi-hit mode) -```txt - Started job on | Nov 16 12:34:59 - Started mapping on | Nov 16 12:35:03 - Finished on | Nov 16 12:37:27 - Mapping speed, Million of reads per hour | 349.72 - - Number of input reads | 13988842 - Average input read length | 100 - UNIQUE READS: - Uniquely mapped reads number | 8547569 - Uniquely mapped reads % | 61.10% - Average mapped length | 99.99 - Number of splices: Total | 356914 - Number of splices: Annotated (sjdb) | 288451 - Number of splices: GT/AG | 321878 - Number of splices: GC/AG | 238 - Number of splices: AT/AC | 2360 - Number of splices: Non-canonical | 32438 - Mismatch rate per base, % | 1.87% - Deletion rate per base | 0.01% - Deletion average length | 1.21 - Insertion rate per base | 0.01% - Insertion average length | 1.25 - MULTI-MAPPING READS: - Number of reads mapped to multiple loci | 5012911 - % of reads mapped to multiple loci | 35.84% - Number of reads mapped to too many loci | 5 - % of reads mapped to too many loci | 0.00% - UNMAPPED READS: - Number of reads unmapped: too many mismatches | 0 - % of reads unmapped: too many mismatches | 0.00% - Number of reads unmapped: too short | 419109 - % of reads unmapped: too short | 3.00% - Number of reads unmapped: other | 9248 - % of reads unmapped: other | 0.07% - CHIMERIC READS: - Number of chimeric reads | 0 - % of chimeric reads | 0.00% -``` -Click [here](#alignment-metrics-for-the-test-run-of-star) for alignment metrics for the previous test run of `STAR` (['rna-star' parameters](#alignment-metrics-for-the-test-run-of-star)) - - -###### Thoughts on the alignment metrics for `STAR` (multi-hit mode) -- Interesting how, even with `--outFilterMultimapNmax 1000` and `--winAnchorMultimapNmax 1000`, there are still 5 reads for `Number of reads mapped to too many loci` -- On `Number of reads unmapped: too short`, a [comment from Alex Dobin](https://github.com/alexdobin/STAR/issues/164#issuecomment-226828834), author of `STAR`: '"too short" literally means "alignment too short".' -- On `...`, another [comment from Dobin](https://github.com/alexdobin/STAR/issues/506#issuecomment-432274359): 'The unmapped-other indeed means unmapped for reasons other than "too short" or "too many mismatches". Most commonly in this category, `STAR` cannot find good seeds, i.e., all seeds map too many times (50 by default), which can also be thought of as all seeds being too short. This may be caused by reads coming from highly repetitive regions of the genomes, but also can be caused by contamination with unrelated species.' - -Click [here](#thoughts-on-the-alignment-metrics-for-star) for thoughts and comments from the previous test run of `STAR` (['rna-star' parameters](#alignment-metrics-for-the-test-run-of-star)) - - -###### Examine the flags in the `.bam` outfile from the test run of `STAR` (multi-hit mode) -Use `samtools flagstat` and the bespoke function `list_tally_flags`: -```bash -#!/bin/bash -#DONTRUN - -# grabnode has been called with default/lowest settings; samtools is loaded -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" - -module load SAMtools/1.16.1-GCC-11.2.0 - -samtools flagstat \ - ./exp_alignment_STAR_multi-hit/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam \ - > ./exp_alignment_STAR_multi-hit/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.flagstat.txt - -less ./exp_alignment_STAR_multi-hit/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.flagstat.txt -# 27446606 + 531078 primary -# 75080564 + 923976 secondary -# 0 + 0 supplementary -# 0 + 0 duplicates -# 0 + 0 primary duplicates -# 101853252 + 1272248 mapped (99.34% : 87.44%) -# 26772688 + 348272 primary mapped (97.54% : 65.58%) -# 27446606 + 531078 paired in sequencing -# 13723303 + 265539 read1 -# 13723303 + 265539 read2 -# 26772688 + 348272 properly paired (97.54% : 65.58%) -# 26772688 + 348272 with itself and mate mapped -# 0 + 0 singletons (0.00% : 0.00%) -# 0 + 0 with mate mapped to a different chr -# 0 + 0 with mate mapped to a different chr (mapQ>=5) -echo $(( 27446606 + 531078 )) # 27977684 - -cd ./exp_alignment_STAR_multi-hit/files_bams - -calculate_run_time() { - # Calculate run time for chunk of code - # - # :param 1: start time in $(date +%s) format - # :param 2: end time in $(date +%s) format - # :param 3: message to be displayed when printing the run time (chr) - run_time="$(echo "${2}" - "${1}" | bc -l)" - - echo "" - echo "${3}" - printf 'Run time: %dh:%dm:%ds\n' \ - $(( run_time/3600 )) $(( run_time%3600/60 )) $(( run_time%60 )) - echo "" -} - - -display_spinning_icon() { - # Display "spinning icon" while a background process runs - # - # :param 1: PID of the last program the shell ran in the background (int) - # :param 2: message to be displayed next to the spinning icon (chr) - spin="/|\\–" - i=0 - while kill -0 "${1}" 2> /dev/null; do - i=$(( (i + 1) % 4 )) - printf "\r${spin:$i:1} %s" "${2}" - sleep .15 - done -} - - -list_tally_flags() { - # List and tally flags in a bam infile; function acts on a bam infile to - # perform piped commands (samtools view, cut, sort, uniq -c, sort -nr) that - # list and tally flags; function writes the results to a txt outfile, the - # name of which is derived from the txt infile - # - # :param 1: name of bam infile, including path (chr) - start="$(date +%s)" - - samtools view "${1}" \ - | cut -d$'\t' -f 2 \ - | sort \ - | uniq -c \ - | sort -nr \ - > "${1/.bam/.flags.txt}" & - display_spinning_icon $! \ - "Running piped commands (samtools view, cut, sort, uniq -c, sort -nr) on $(basename "${1}")... " - - end="$(date +%s)" - echo "" - calculate_run_time "${start}" "${end}" \ - "List and tally flags in $(basename "${1}")." -} - - -list_tally_flags 5781_G1_IN_mergedAligned.sortedByCoord.out.bam - -# Numbers of records in the .bam file -samtools view -c \ - 5781_G1_IN_mergedAligned.sortedByCoord.out.bam -# 103982224 (27977684 fr/initial test ('rna-star' parameters)) - -# Numbers of records in the *_R{1,2}.fastq files -cd .. -echo $(cat ./files_fastq_symlinks/5781_G1_IN_merged_R1.fastq | wc -l)/4 | bc -# 13988842 -echo $(cat ./files_fastq_symlinks/5781_G1_IN_merged_R2.fastq | wc -l)/4 | bc -# 13988842 - -echo $(( 13988842 + 13988842 )) -# 27977684 - -# The numbers of records in the .bam and .fastq files are equivalent -``` - -Contents of outfile from running `list_tally_flags` (including some format edits and notes from me)... -```txt -19948030 419 not primary alignment -19948030 339 not primary alignment -17592252 403 not primary alignment -17592252 355 not primary alignment - 7217590 83 primary alignment - 7217590 163 primary alignment - 6168754 99 primary alignment - 6168754 147 primary alignment - 336959 77 unmapped (read, mate) - 336959 141 unmapped (read, mate) - 248080 931 not primary alignment read fails - 248080 851 not primary alignment read fails - 213908 915 not primary alignment read fails - 213908 867 not primary alignment read fails - 94722 675 read fails - 94722 595 read fails - 91403 653 unmapped (read, mate) read fails - 91403 589 unmapped (read, mate) read fails - 79414 659 read fails - 79414 611 read fails -``` -What are the meanings of these flags? Use [this tool](https://broadinstitute.github.io/picard/explain-flags.html) to check: -| flag | meaning | -| :--- | :-------------------------------------------------------------------------------------------------------------------------- | -| 419 | 0x1, read mapped in proper pair (0x2), mate reverse strand (0x20), second in pair (0x80), not primary alignment (0x100) | -| 339 | 0x1, read mapped in proper pair (0x2), read reverse strand (0x10), first in pair (0x40), not primary alignment (0x100) | -| 403 | 0x1, read mapped in proper pair (0x2), read reverse strand (0x10), second in pair (0x80), not primary alignment (0x100) | -| 355 | 0x1, read mapped in proper pair (0x2), mate reverse strand (0x20), first in pair (0x40), not primary alignment (0x100) | -| 83 | read paired (0x1), read mapped in proper pair (0x2), read reverse strand (0x10), first in pair (0x40) | -| 163 | read paired (0x1), read mapped in proper pair (0x2), mate reverse strand (0x20), second in pair (0x80) | -| 99 | read paired (0x1), read mapped in proper pair (0x2), mate reverse strand (0x20), first in pair (0x40) | -| 147 | read paired (0x1), read mapped in proper pair (0x2), read reverse strand (0x10), second in pair (0x80) | -| 77 | read paired (0x1), read unmapped (0x4), mate unmapped (0x8), first in pair (0x40) | -| 141 | read paired (0x1), read unmapped (0x4), mate unmapped (0x8), second in pair (0x80) | -| 931 | 0x1, 0x2, mate reverse strand (0x20), second in pair (0x80), not primary alignment (0x100), read fails* (0x200) | -| 851 | 0x1, 0x2, read reverse strand (0x10), first in pair (0x40), not primary alignment (0x100), read fails* (0x200) | -| 915 | 0x1, 0x2, read reverse strand (0x10), second in pair (0x80), not primary alignment (0x100), read fails* (0x200) | -| 867 | 0x1, 0x2, mate reverse strand (0x20), first in pair (0x40), not primary alignment (0x100), read fails* (0x200) | -| 675 | read paired (0x1), read mapped in proper pair (0x2), mate reverse strand (0x20), second in pair (0x80), read fails* (0x200) | -| 595 | read paired (0x1), read mapped in proper pair (0x2), read reverse strand (0x10), first in pair (0x40), read fails* (0x200) | -| 653 | read paired (0x1), read unmapped (0x4), mate unmapped (0x8), second in pair (0x80), read fails* (0x200) | -| 589 | read paired (0x1), read unmapped (0x4), mate unmapped (0x8), first in pair (0x40), read fails* (0x200) | -| 659 | read paired (0x1), read mapped in proper pair (0x2), read reverse strand (0x10), second in pair (0x80), read fails* (0x200) | -| 611 | read paired (0x1), read mapped in proper pair (0x2), mate reverse strand (0x20), first in pair (0x40), read fails* (0x200) | - -
- -Click [here](#thoughts-on-the-alignment-metrics-for-star) for thoughts and comments from the previous test run of `STAR` (['rna-star' parameters](#examine-the-flags-in-the-bam-outfile-from-the-test-run-of-star-multi-hit-mode)) - -Also, a little bit of cleanup -```bash -#!/bin/bash -#DONTRUN - -# grabnode has been called with default/lowest settings; samtools is loaded -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" - -ls -lhaFG -total 1.9M -# drwxrws--- 10 kalavatt 967 Nov 17 12:41 ./ -# drwxrws--- 7 kalavatt 135 Nov 17 12:38 ../ -# -rw-rw---- 1 kalavatt 0 Nov 16 12:34 4016030.err.txt -# -rw-rw---- 1 kalavatt 986 Nov 16 12:37 4016030.out.txt -# drwxrws--- 3 kalavatt 160 Nov 9 15:23 exp_alignment_Bowtie_2/ -# drwxrws--- 3 kalavatt 150 Nov 16 16:13 exp_alignment_STAR/ -# drwxrws--- 3 kalavatt 84 Nov 16 16:12 exp_alignment_STAR_multi-hit/ -# drwxrws--- 2 kalavatt 1.1K Nov 7 15:27 exp_FastQC/ -# drwxrws--- 2 kalavatt 854 Nov 7 14:31 exp_picardmetrics/ -# drwxrws--- 3 kalavatt 317 Nov 7 14:44 exp_Trinity/ -# drwxrws--- 3 kalavatt 720 Nov 8 10:03 files_fastq_symlinks/ -# -rw-rw---- 1 kalavatt 14K Nov 16 12:23 notes-Alison-files-locations.md -# -rw-rw---- 1 kalavatt 29K Nov 16 12:23 notes-Alison-papers.md -# -rw-rw---- 1 kalavatt 1.3K Nov 16 12:23 notes-Alison-RNA-seq-kits.md -# -rw-rw---- 1 kalavatt 6.6K Nov 17 09:27 notes-miscellaneous-links.md -# -rw-rw---- 1 kalavatt 5.7K Nov 16 12:23 notes-RNA-seq-spike-ins.md -# -rw-rw---- 1 kalavatt 35K Nov 16 12:23 notes-UMIs-etc.md -# drwxrws--- 2 kalavatt 26 Nov 10 12:33 readme/ -# -rw-rw---- 1 kalavatt 617 Nov 8 14:43 submit-Bowtie-2.test-1.sh -# -rw-rw---- 1 kalavatt 642 Nov 8 16:16 submit-Bowtie-2.test-2.sh -# -rw-rw---- 1 kalavatt 300 Nov 7 14:58 submit-FastQC.sh -# -rw-rw---- 1 kalavatt 871 Nov 16 12:34 submit-STAR-alignReads-multi-hit.sh -# -rw-rw---- 1 kalavatt 694 Nov 3 17:41 submit-Trinity.sh -# -rw-rw---- 1 kalavatt 23K Nov 16 12:23 work-TPM-calculation.md -# -rw-rw---- 1 kalavatt 236K Nov 17 12:47 work-Trinity.md - -# Move SLURM stdout and stderr to the appropriate directory -mv 4016030.* ./exp_alignment_STAR_multi-hit/ -``` - - -#### Writing and testing `split_bam_by_species.sh` - -##### Use `split_bam_by_species.sh` to get VII and *K. lactis* chromosomes from `.bam` files (2022-1116) -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest/default settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction" - -module load SAMtools/1.16.1-GCC-11.2.0 - -samtools index \ - ./results/2022-1101/exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam - -bash bin/split_bam_by_species.sh -# Take user-input .bam files containing alignments to S. cerevisiae, K. lactis, -# and 20 S narnavirus, and split them into distinct .bam files for each species, -# with three splits for S. cerevisiae: all S. cerevisiae chromosomes not -# including chromosome M, all S. cerevisiae including chromosome M, and S. -# cerevisiae chromosome M only. -# -# Names of chromosomes in .bam infiles must be in the following format: -# - S. cerevisiae -# - I -# - II -# - III -# - IV -# - V -# - VI -# - VII -# - VIII -# - IX -# - X -# - XI -# - XII -# - XIII -# - XIV -# - XV -# - XVI -# -# - K. lactis -# - A -# - B -# - C -# - D -# - E -# -# - 20 S narnavirus -# - 20S -# -# The split .bam files are saved to a user-defined out directory. -# -# Dependencies: -# - samtools >= 1.9 -# -# Arguments: -# -h print this help message and exit -# -u use safe mode: "TRUE" or "FALSE" -# -i infile, including path -# -o outfile directory, including path; if not found, will be mkdir'd -# -s what to split out; options: SC_all, SC_no_Mito, SC_VII, SC_XII, -# SC_VII_XII, SC_Mito, KL_all, virus_20S -# -t number of threads = 1> - -bash bin/split_bam_by_species.sh \ - -u TRUE \ - -i ./results/2022-1101/exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam \ - -o ./results/2022-1101/exp_alignment_STAR/files_bams \ - -s SC_VII \ - -t 1 - -bash bin/split_bam_by_species.sh \ - -u FALSE \ - -i ./results/2022-1101/exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam \ - -o ./results/2022-1101/exp_alignment_STAR/files_bams \ - -s KL_all \ - -t 1 - -cd ./results/2022-1101/exp_alignment_STAR/files_bams - -samtools view -h \ - 5781_G1_IN_mergedAligned.sortedByCoord.out.split_SC_VII.bam \ - | less - -samtools view -h \ - 5781_G1_IN_mergedAligned.sortedByCoord.out.split_KL_all.bam \ - | less - -# It works! - -#TODO 1/2 Need to write the script so that it inherits the environment from -#TODO 2/2 which it was called -``` - - -##### Having updated and "function-ized" `split_bam_by_species.sh`, test it (2022-1117) -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest/default settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/" - -module load SAMtools/1.16.1-GCC-11.2.0 - -dir_abbrev="./exp_alignment_STAR/files_bams" -if [[ ! -f "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam.bai" ]]; then - samtools index "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" -fi - -bash ../../bin/split_bam_by_species.sh -# split_bam_by_species.sh -# ----------------------- -# Take user-input .bam files containing alignments to S. cerevisiae, K. lactis, -# and 20 S narnavirus, and split them into distinct .bam files for each species, -# with three splits for S. cerevisiae: all S. cerevisiae chromosomes not -# including chromosome M, all S. cerevisiae including chromosome M, and S. -# cerevisiae chromosome M only. -# -# Names of chromosomes in .bam infiles must be in the following format: -# - S. cerevisiae (SC) -# - I -# - II -# - III -# - IV -# - V -# - VI -# - VII -# - VIII -# - IX -# - X -# - XI -# - XII -# - XIII -# - XIV -# - XV -# - XVI -# - Mito -# -# - K. lactis (KL) -# - A -# - B -# - C -# - D -# - E -# -# - 20 S narnavirus -# - 20S -# -# The split .bam files are saved to a user-defined out directory. -# -# Dependencies: -# - samtools >= #TBD -# -# Arguments: -# -h print this help message and exit -# -u use safe mode: "TRUE" or "FALSE" -# -i infile, including path -# -o outfile directory, including path; if not found, will be mkdir'd -# -s what to split out; options: SC_all, SC_no_Mito, SC_VII, SC_XII, -# SC_VII_XII, SC_Mito, KL_all, virus_20S -# -# SC_all return all SC chromosomes, including Mito (default) -# SC_no_Mito return all SC chromosomes, excluding Mito -# SC_VII return only SC chromosome VII -# SC_XII return only SC chromosome XII -# SC_VII_XII return only SC chromosomes VII and XII -# SC_Mito return only SC chromosome Mito -# KL_all return all KL chromosomes -# virus_20S return only 20 S narnavirus -# -# -t number of threads = 1; default: 1> - -if [[ -f "./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.split_SC_VII_XII.bam" ]]; then - rm "./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.split_SC_VII_XII.bam" -fi - -bash ../../bin/split_bam_by_species.sh \ - -u TRUE \ - -i ${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam \ - -o ${dir_abbrev} \ - -s SC_VII_XII \ - -t 1 - -# It works! -``` - -Safe mode: Information printed to screen -
-Click here to expand - -```txt -Running ../../bin/split_bam_by_species.sh... --u: "Safe mode" is TRUE. -+ check_exists_file ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam -+ what=' - check_exists_file() - ------------------- - Check that a file exists; exit if it doesn'\''t - - :param 1: file, including path - :return: NA - ' -+ [[ -z ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam ]] -+ [[ ! -f ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam ]] -+ : -+ check_exists_directory TRUE ./exp_alignment_STAR/files_bams -+ what=' - check_exists_directory() - ------------------------ - Check that a directory exists; if it doesn'\''t, then either make it or exit - - :param 1: create directory if not found: TRUE or FALSE - - :param 2: directory, including path - ' -+ case "$(convert_chr_lower "${1}")" in -++ convert_chr_lower TRUE -++ what=' - convert_chr_lower() - ----------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string - ' -++ [[ -z TRUE ]] -++ string_in=TRUE -+++ tr '[:upper:]' '[:lower:]' -+++ printf %s TRUE -++ string_out=true -++ echo true -+ [[ -f ./exp_alignment_STAR/files_bams ]] -+ printf '%s\n' './exp_alignment_STAR/files_bams doesn'\''t exist; mkdir'\''ing it.' -./exp_alignment_STAR/files_bams doesn't exist; mkdir'ing it. -+ mkdir -p ./exp_alignment_STAR/files_bams -+ case "$(echo "${split}" | tr '[:upper:]' '[:lower:]')" in -++ tr '[:upper:]' '[:lower:]' -++ echo SC_VII_XII -+ : -+ echo '' - -++ basename ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam -+ base=5781_G1_IN_mergedAligned.sortedByCoord.out.bam -+ name=5781_G1_IN_mergedAligned.sortedByCoord.out -+ SC_all=./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.split_SC_all.bam -+ SC_no_Mito=./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.split_SC_no_Mito.bam -+ SC_VII=./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.split_SC_VII.bam -+ SC_XII=./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.split_SC_XII.bam -+ SC_VII_XII=./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.split_SC_VII_XII.bam -+ SC_Mito=./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.split_SC_Mito.bam -+ KL_all=./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.split_KL_all.bam -+ virus_20S=./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.split_20S.bam -+++ convert_chr_lower SC_VII_XII -+++ what=' - convert_chr_lower() - ----------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string - ' -+++ [[ -z SC_VII_XII ]] -+++ string_in=SC_VII_XII -++++ tr '[:upper:]' '[:lower:]' -++++ printf %s SC_VII_XII -+++ string_out=sc_vii_xii -+++ echo sc_vii_xii -++ echo sc_vii_xii -+ [[ sc_vii_xii == \s\c\_\a\l\l ]] -+++ convert_chr_lower SC_VII_XII -+++ what=' - convert_chr_lower() - ----------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string - ' -+++ [[ -z SC_VII_XII ]] -+++ string_in=SC_VII_XII -++++ tr '[:upper:]' '[:lower:]' -++++ printf %s SC_VII_XII -+++ string_out=sc_vii_xii -+++ echo sc_vii_xii -++ echo sc_vii_xii -+ [[ sc_vii_xii == \s\c\_\n\o\_\m\i\t\o ]] -+++ convert_chr_lower SC_VII_XII -+++ what=' - convert_chr_lower() - ----------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string - ' -+++ [[ -z SC_VII_XII ]] -+++ string_in=SC_VII_XII -++++ tr '[:upper:]' '[:lower:]' -++++ printf %s SC_VII_XII -+++ string_out=sc_vii_xii -+++ echo sc_vii_xii -++ echo sc_vii_xii -+ [[ sc_vii_xii == \s\c\_\v\i\i ]] -+++ convert_chr_lower SC_VII_XII -+++ what=' - convert_chr_lower() - ----------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string - ' -+++ [[ -z SC_VII_XII ]] -+++ string_in=SC_VII_XII -++++ tr '[:upper:]' '[:lower:]' -++++ printf %s SC_VII_XII -+++ string_out=sc_vii_xii -+++ echo sc_vii_xii -++ echo sc_vii_xii -+ [[ sc_vii_xii == \s\c\_\x\i\i ]] -+++ convert_chr_lower SC_VII_XII -+++ what=' - convert_chr_lower() - ----------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string - ' -+++ [[ -z SC_VII_XII ]] -+++ string_in=SC_VII_XII -++++ tr '[:upper:]' '[:lower:]' -++++ printf %s SC_VII_XII -+++ string_out=sc_vii_xii -+++ echo sc_vii_xii -++ echo sc_vii_xii -+ [[ sc_vii_xii == \s\c\_\v\i\i\_\x\i\i ]] -+ chr='VII XII' -+ split_with_samtools 1 ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam 'VII XII' ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.split_SC_all.bam -+ what=' - split_with_samtools() - --------------------- - Use samtools to filter a bam file such that it contains only chromosome(s) - specified with ../../bin/split_bam_by_species.sh argument -s - - :param 1: threads = 1> - :param 2: bam infile, including path - :param 3: chromosomes to retain - :param 4: bam outfile, including path - :return: :param 2: filtered to include only :param 3: in :param 4: - ' -+ samtools view -@ 1 -h ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam VII XII -o ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.split_SC_all.bam -``` -
- - -#### Writing and testing `exclude_bam_reads-unmapped.sh` (2022-1117) -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest/default settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/" - -module load SAMtools/1.16.1-GCC-11.2.0 - -dir_abbrev="./exp_alignment_STAR/files_bams" -if [[ ! -f "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam.bai" ]]; then - samtools index "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" -fi - -bash ../../bin/exclude_bam_reads-unmapped.sh -# exclude_bam_alignments-unmapped.sh -# ---------------------------------- -# Exclude unmapped alignments from bam infile. Name of bam outfile will be -# derived from the infile. -# -# Dependencies: -# - samtools >= #TBD -# -# Arguments: -# -h print this help message and exit -# -u use safe mode: "TRUE" or "FALSE" -# -i bam infile, including path -# -o outfile directory, including path; if not found, will be mkdir'd -# -f run samtools flagstat on bams: "TRUE" or "FALSE" -# -t number of threads = 1; default: 1> - -bash ../../bin/exclude_bam_reads-unmapped.sh \ - -u TRUE \ - -i "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" \ - -o "${dir_abbrev}" \ - -f FALSE \ - -t 1 -``` - -Text printed to terminal from running `-u TRUE` -
-Click here to expand - -```txt -# ❯ bash ../../bin/exclude_bam_reads-unmapped.sh \ -# -u TRUE \ -# -i "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" \ -# -o "${dir_abbrev}" \ -# -f FALSE \ -# -t 1 - -Running ../../bin/exclude_bam_reads-unmapped.sh... --u: "Safe mode" is TRUE. -+ check_exists_file ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam -+ what=' - check_exists_file() - ------------------- - Check that a file exists; exit if it doesn'\''t - - :param 1: file, including path - :return: NA - ' -+ [[ -z ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam ]] -+ [[ ! -f ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam ]] -+ : -+ check_exists_directory TRUE ./exp_alignment_STAR/files_bams -+ what=' - check_exists_directory() - ------------------------ - Check that a directory exists; if it doesn'\''t, then either make it or exit - - :param 1: create directory if not found: TRUE or FALSE - - :param 2: directory, including path - ' -+ case "$(convert_chr_lower "${1}")" in -++ convert_chr_lower TRUE -++ what=' - convert_chr_lower() - ------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string - ' -++ [[ -z TRUE ]] -++ string_in=TRUE -+++ tr '[:upper:]' '[:lower:]' -+++ printf %s TRUE -++ string_out=true -++ echo true -+ [[ -f ./exp_alignment_STAR/files_bams ]] -+ printf '%s\n' './exp_alignment_STAR/files_bams doesn'\''t exist; mkdir'\''ing it.' -./exp_alignment_STAR/files_bams doesn't exist; mkdir'ing it. -+ mkdir -p ./exp_alignment_STAR/files_bams -+ check_argument_flagstat -+ case "$(echo "$(convert_chr_lower "${flagstat}")")" in -+++ convert_chr_lower FALSE -+++ what=' - convert_chr_lower() - ------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string - ' -+++ [[ -z FALSE ]] -+++ string_in=FALSE -++++ tr '[:upper:]' '[:lower:]' -++++ printf %s FALSE -+++ string_out=false -+++ echo false -++ echo false -+ flagstat=0 -+ echo -e '-f: "Run samtools flagstat" is FALSE.' --f: "Run samtools flagstat" is FALSE. -+ check_argument_threads -+ what=' - check_argument_threads() - --------------- - Check the value assigned to "${threads}" in script; assumes variable - "${threads}" is defined - - :param "${threads}": value assigned to variable within script = 1> - :return: NA - - #TODO Checks... - ' -+ case "${threads}" in -+ : -+ echo '' - -++ basename ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam -+ base=5781_G1_IN_mergedAligned.sortedByCoord.out.bam -+ outfile=5781_G1_IN_mergedAligned.sortedByCoord.out.primary.bam -+ echo 'Filtering out unmapped...' -Filtering out unmapped... -+ samtools view -@ 1 -b -f 0x4 -f 0x8 ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam -o ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.primary.bam -+ check_exit 0 samtools -+ what=' - check_exit() - ------------ - Check the exit code of a child process - - :param 1: exit code = 0> - :param 2: program/package - - #TODO Check that params are not empty or inappropriate formats or strings - ' -+ [[ 0 == \0 ]] -++ date -+ echo 'samtools completed: Thu Nov 17 15:05:46 PST 2022' -samtools completed: Thu Nov 17 15:05:46 PST 2022 -+ [[ 0 -eq 1 ]] -``` -
- -Did the filtering work correctly? Check the alignment counts and flag tallies... -```bash -#!/bin/bash -#DONTRUN - -# loggin in (grabnode), loading module(s), cd'ing, etc. in previous chunk -samtools view -c "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" -# 27977684 - -samtools view -c "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam" -# 10858952 - -calculate_run_time() { - # Calculate run time for chunk of code - # - # :param 1: start time in $(date +%s) format - # :param 2: end time in $(date +%s) format - # :param 3: message to be displayed when printing the run time (chr) - run_time="$(echo "${2}" - "${1}" | bc -l)" - - echo "" - echo "${3}" - printf 'Run time: %dh:%dm:%ds\n' \ - $(( run_time/3600 )) $(( run_time%3600/60 )) $(( run_time%60 )) - echo "" -} - - -display_spinning_icon() { - # Display "spinning icon" while a background process runs - # - # :param 1: PID of the last program the shell ran in the background (int) - # :param 2: message to be displayed next to the spinning icon (chr) - spin="/|\\–" - i=0 - while kill -0 "${1}" 2> /dev/null; do - i=$(( (i + 1) % 4 )) - printf "\r${spin:$i:1} %s" "${2}" - sleep .15 - done -} - - -list_tally_flags() { - # List and tally flags in a bam infile; function acts on a bam infile to - # perform piped commands (samtools view, cut, sort, uniq -c, sort -nr) that - # list and tally flags; function writes the results to a txt outfile, the - # name of which is derived from the txt infile - # - # :param 1: name of bam infile, including path (chr) - start="$(date +%s)" - - samtools view "${1}" \ - | cut -d$'\t' -f 2 \ - | sort \ - | uniq -c \ - | sort -nr \ - > "${1/.bam/.flags.txt}" & - display_spinning_icon $! \ - "Running piped commands (samtools view, cut, sort, uniq -c, sort -nr) on $(basename "${1}")... " - - end="$(date +%s)" - echo "" - calculate_run_time "${start}" "${end}" \ - "List and tally flags in $(basename "${1}")." -} - -list_tally_flags "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" -list_tally_flags "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam" -``` - -Contents of `list_tally_flags` for `*.out.flags.txt` -```txt -5276715 77 -5276715 141 -4691235 99 -4691235 147 -3755353 83 -3755353 163 - 152761 653 - 152761 589 - 62364 659 - 62364 611 - 50414 675 - 50414 595 -``` - -Contents of `list_tally_flags` for `*.out.exclude-unmapped.flags.txt` -```txt -5276715 77 -5276715 141 - 152761 653 - 152761 589 -``` - -Clearly, there's an issue in which only the unmapped reads were retained, so probably need to change `-f` to `-F` (2022-1117). - -After looking into things, that's indeed the case; I ended up filtering out all but unmapped reads, and this is because we called `samtools view` with argument `-f` and not `-F` (2022-1118). -```bash -#!/bin/bash -#DONTRUN - -# This is incorrect -samtools view \ - -@ "${threads}" \ - -b -f 0x4 -f 0x8 \ - "${infile}" \ - -o "${outdir}/${outfile}" - check_exit $? "samtools" - -# This is correct -samtools view \ - -@ "${threads}" \ - -b -F 0x4 -F 0x8 \ - "${infile}" \ - -o "${outdir}/${outfile}" - check_exit $? "samtools" - -# From help for `samtools view` -#+ -f, --require-flags FLAG ...have all of the FLAGs present -#+ -F, --excl[ude]-flags FLAG ...have none of the FLAGs present -``` - - -##### Testing the updated, corrected `exclude_bam_reads-unmapped.sh` (2022-1118) -Have updated `exclude_bam_reads-unmapped.sh` appropriately. Now, rerun things: -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest/default settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/" - -module load SAMtools/1.16.1-GCC-11.2.0 - -dir_abbrev="./exp_alignment_STAR/files_bams" - -if [[ -f "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt" ]]; then - rm "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt" -fi - -if [[ ! -f "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam.bai" ]]; then - samtools index "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" -fi - -bash ../../bin/exclude_bam_reads-unmapped.sh -# exclude_bam_alignments-unmapped.sh -# ---------------------------------- -# Filter out unmapped alignments from a bam infile. Optionally, run samtools -# flagstat on the filtered bam. - -# Name(s) of outfile(s) will be derived from the infile. - -# Dependencies: -# - samtools >= #TBD - -# Arguments: -# -h print this help message and exit -# -u use safe mode: "TRUE" or "FALSE" -# -i bam infile, including path -# -o outfile directory, including path; if not found, will be mkdir'd -# -f run samtools flagstat on bams: "TRUE" or "FALSE" -# -t number of threads = 1; default: 1> - -bash ../../bin/exclude_bam_reads-unmapped.sh \ - -u TRUE \ - -i "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" \ - -o "${dir_abbrev}" \ - -f FALSE \ - -t 1 -``` - -Text printed to terminal from running `-u TRUE` -
-Click here to expand - -```txt -# ❯ bash ../../bin/exclude_bam_reads-unmapped.sh \ -# -u TRUE \ -# -i "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" \ -# -o "${dir_abbrev}" \ -# -f FALSE \ -# -t 1 - --u: "Safe mode" is TRUE. -+ check_exists_file ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam -+ what=' - check_exists_file() - ------------------- - Check that a file exists; exit if it doesn'\''t - - :param 1: file, including path - :return: NA - ' -+ [[ -z ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam ]] -+ [[ ! -f ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam ]] -+ : -+ check_exists_directory TRUE ./exp_alignment_STAR/files_bams -+ what=' - check_exists_directory() - ------------------------ - Check that a directory exists; if it doesn'\''t, then either make it or exit - - :param 1: create directory if not found: TRUE or FALSE - - :param 2: directory, including path - ' -+ case "$(convert_chr_lower "${1}")" in -++ convert_chr_lower TRUE -++ what=' - convert_chr_lower() - ------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string - ' -++ [[ -z TRUE ]] -++ string_in=TRUE -+++ tr '[:upper:]' '[:lower:]' -+++ printf %s TRUE -++ string_out=true -++ echo true -+ [[ -f ./exp_alignment_STAR/files_bams ]] -+ printf '%s\n' './exp_alignment_STAR/files_bams doesn'\''t exist; mkdir'\''ing it.' -./exp_alignment_STAR/files_bams doesn't exist; mkdir'ing it. -+ mkdir -p ./exp_alignment_STAR/files_bams -+ check_argument_flagstat -+ case "$(echo "$(convert_chr_lower "${flagstat}")")" in -+++ convert_chr_lower FALSE -+++ what=' - convert_chr_lower() - ------------------- - Convert alphabetical characters in a string to lowercase letters - - :param 1: string - :return: converted string - ' -+++ [[ -z FALSE ]] -+++ string_in=FALSE -++++ tr '[:upper:]' '[:lower:]' -++++ printf %s FALSE -+++ string_out=false -+++ echo false -++ echo false -+ flagstat=0 -+ printf '%s\n' '"Run samtools flagstat" is FALSE.' -"Run samtools flagstat" is FALSE. -+ check_argument_threads -+ what=' - check_argument_threads() - --------------- - Check the value assigned to "${threads}" in script; assumes variable - "${threads}" is defined - - :param "${threads}": value assigned to variable within script = 1> - :return: NA - - #TODO Checks... - ' -+ case "${threads}" in -+ : -+ echo '' - -++ basename ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam -+ base=5781_G1_IN_mergedAligned.sortedByCoord.out.bam -+ outfile=5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -+ main -+ echo '' - -+ echo 'Running ../../bin/exclude_bam_reads-unmapped.sh... ' -Running ../../bin/exclude_bam_reads-unmapped.sh... -+ echo 'Filtering out unmapped...' -Filtering out unmapped... -+ samtools view -@ 1 -b -F 0x4 -F 0x8 ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam -o ./exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -+ check_exit 0 samtools -+ what=' - check_exit() - ------------ - Check the exit code of a child process - - :param 1: exit code = 0> - :param 2: program/package - - #TODO Check that params are not empty or inappropriate formats or strings - ' -+ [[ 0 == \0 ]] -++ date -+ echo 'samtools completed: Fri Nov 18 10:19:34 PST 2022' -samtools completed: Fri Nov 18 10:19:34 PST 2022 -+ [[ 0 -eq 1 ]] -``` -
- -Now, check the alignment counts and flag tallies again... - -Related to this, have added `calculate_run_time()`, `display_spinning_icon()`, and `list_tally_flags()` to `./2022_transcriptome-construction/bin/functions.sh`; from here on out, will source this to run those functions - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest/default settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" - -module load SAMtools/1.16.1-GCC-11.2.0 - -source ../../bin/functions.sh -# declare -F # Yes, they're loaded into the environment - -dir_abbrev="./exp_alignment_STAR/files_bams" - -list_tally_flags "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" -list_tally_flags "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam" -``` - -Contents of `list_tally_flags` for `*.out.flags.txt` -```txt -5276715 77 -5276715 141 -4691235 99 -4691235 147 -3755353 83 -3755353 163 - 152761 653 - 152761 589 - 62364 659 - 62364 611 - 50414 675 - 50414 595 -``` - -Contents of `list_tally_flags` for `*.out.exclude-unmapped.flags.txt` -```txt -4691235 99 -4691235 147 -3755353 83 -3755353 163 - 62364 659 - 62364 611 - 50414 675 - 50414 595 -``` -It works! - - -##### Run the updated, corrected `exclude_bam_reads-unmapped.sh` on the "multi-hit mode" `.bam` -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest/default settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/" - -source ../../bin/functions.sh - -module load SAMtools/1.16.1-GCC-11.2.0 - -dir_abbrev="./exp_alignment_STAR_multi-hit/files_bams" - -if [[ -f "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt" ]]; then - rm "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt" -fi - -if [[ ! -f "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam.bai" ]]; then - samtools index "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" -fi - -bash ../../bin/exclude_bam_reads-unmapped.sh \ - -u FALSE \ - -i "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" \ - -o "${dir_abbrev}" \ - -f TRUE \ - -t 1 -``` - -Printed to screen while running the above: -```txt -# ❯ bash ../../bin/exclude_bam_reads-unmapped.sh \ -# -u FALSE \ -# -i "${dir_abbrev}/5781_G1_IN_mergedAligned.sortedByCoord.out.bam" \ -# -o "${dir_abbrev}" \ -# -f TRUE \ -# -t 1 - -"Safe mode" is FALSE. -./exp_alignment_STAR_multi-hit/files_bams doesn't exist; mkdir'ing it. -"Run samtools flagstat" is TRUE. - - -Running ../../bin/exclude_bam_reads-unmapped.sh... -Filtering out unmapped reads... -samtools completed: Fri Nov 18 12:20:58 PST 2022 -samtools completed: Fri Nov 18 12:20:58 PST 2022 -``` -`#TODO` Need to fix the `./exp_alignment_STAR_multi-hit/files_bams doesn't exist; mkdir'ing it.` message - - -#### Another look at the metrics and flags from the two `STAR` alignment approaches (2022-1118) - -##### Some readouts for the 'rna-star' and 'multi-hit-mode' `.bam` files -*'rna-star'* -![Metrics: 'rna-star'](./notebook/alignment.rna-star-parameters.metrics.png) -*'multi-hit mode'* -![Metrics: 'multi-hit mode'](./notebook/alignment.multi-hit-mode-parameters.metrics.png) -*'rna-star'* -![Flag tallies: 'rna-star'](./notebook/alignment.rna-star-parameters.list-tally-flags.png) -*'multi-hit mode'* -![Flag tallies: 'multi-hit mode'](./notebook/alignment.multi-hit-mode-parameters.list-tally-flags.png) - -```bash -#!bin/bash -#DONTRUN - -grabnode # Lowest/default settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/" - -module load SAMtools/1.16.1-GCC-11.2.0 - -samtools view -c \ - exp_alignment_STAR_multi-hit/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam -# 103982224 - -samtools view -c \ - exp_alignment_STAR/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.bam -# 27977684 -``` - - -##### Some readouts for the 'rna-star' and 'multi-hit-mode' `.bam` files filtered with `exclude_bam_reads-unmapped.sh` -```bash -#!bin/bash -#DONTRUN - -grabnode # Lowest/default settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/" - -source ../../bin/functions.sh - -module load SAMtools/1.16.1-GCC-11.2.0 - -bam="5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam" -bam_rna_star="./exp_alignment_STAR/files_bams/${bam}" -bam_multi_hit="./exp_alignment_STAR_multi-hit/files_bams/${bam}" - - -# Counting the numbers of alignments ----------------------------------------- -samtools view -c "${bam_rna_star}" -# Pre-filtering: 27977684 -# Post-filtering: 17118732 -echo $(( 27977684 - 17118732 )) # 10858952 - -samtools view -c "${bam_multi_hit}" -# Pre-filtering: 103982224 -# Post-filtering: 103125500 -echo $(( 103982224 - 103125500 )) # 856724 - - -# Collecting flag stats ------------------------------------------------------ -samtools flagstat "${bam_rna_star}" > "${bam_rna_star%.bam}.flagstat.txt" -# 16893176 + 225556 in total (QC-passed reads + QC-failed reads) -# 16893176 + 225556 primary -# 0 + 0 secondary -# 0 + 0 supplementary -# 0 + 0 duplicates -# 0 + 0 primary duplicates -# 16893176 + 225556 mapped (100.00% : 100.00%) -# 16893176 + 225556 primary mapped (100.00% : 100.00%) -# 16893176 + 225556 paired in sequencing -# 8446588 + 112778 read1 -# 8446588 + 112778 read2 -# 16893176 + 225556 properly paired (100.00% : 100.00%) -# 16893176 + 225556 with itself and mate mapped -# 0 + 0 singletons (0.00% : 0.00%) -# 0 + 0 with mate mapped to a different chr -# 0 + 0 with mate mapped to a different chr (mapQ>=5) -echo $(( 16893176 + 225556 )) # 17118732 - -samtools flagstat "${bam_multi_hit}" > "${bam_multi_hit%.bam}.flagstat.txt" -# 101853252 + 1272248 in total (QC-passed reads + QC-failed reads) -# 26772688 + 348272 primary -# 75080564 + 923976 secondary -# 0 + 0 supplementary -# 0 + 0 duplicates -# 0 + 0 primary duplicates -# 101853252 + 1272248 mapped (100.00% : 100.00%) -# 26772688 + 348272 primary mapped (100.00% : 100.00%) -# 26772688 + 348272 paired in sequencing -# 13386344 + 174136 read1 -# 13386344 + 174136 read2 -# 26772688 + 348272 properly paired (100.00% : 100.00%) -# 26772688 + 348272 with itself and mate mapped -# 0 + 0 singletons (0.00% : 0.00%) -# 0 + 0 with mate mapped to a different chr -# 0 + 0 with mate mapped to a different chr (mapQ>=5) -echo $(( 26772688 + 348272 )) # 27120960 - - -# List and tally the flags --------------------------------------------------- -list_tally_flags "${bam_rna_star}" -# 4691235 99 primary alignment -# 4691235 147 primary alignment -# 3755353 83 primary alignment -# 3755353 163 primary alignment -# 62364 659 read fails -# 62364 611 read fails -# 50414 675 read fails -# 50414 595 read fails - -list_tally_flags "${bam_multi_hit}" -# 19948030 419 not primary alignment -# 19948030 339 not primary alignment -# 17592252 403 not primary alignment -# 17592252 355 not primary alignment -# 7217590 83 primary alignment -# 7217590 163 primary alignment -# 6168754 99 primary alignment -# 6168754 147 primary alignment -# 248080 931 not primary alignment read fails -# 248080 851 not primary alignment read fails -# 213908 915 not primary alignment read fails -# 213908 867 not primary alignment read fails -# 94722 675 read fails -# 94722 595 read fails -# 79414 659 read fails -# 79414 611 read fails -``` - - -### Rerun `STAR` alignment approaches and metric checks while collecting all tags in `.bam`s -`#DEKHO` -`#REMEMBER` Per Alison, "IP" = Nascent, "IN" = SteadyState -```bash -#!/bin/bash -#DONTRUN - - -# Get started ---------------------------------------------------------------- -grabnode # Lowest/default settings -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/" -mkdir -p exp_alignment_STAR_tags/{rna-star,multi-hit-mode}/files_bams - -module load STAR/2.7.9a-GCC-11.2.0 -module load SAMtools/1.16.1-GCC-11.2.0 - -# Find and list .fastq files; designate the 'prefix' and other variables -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find . \ - -type l \ - -name *578*merged*.fastq \ - -print0 \ - | sort -z \ -) - - -# 'rna-star' ----------------------------------------------------------------- -read_1="${infiles[0]}" -read_2="${infiles[1]}" -genome_dir="${HOME}/genomes/combined_SC_KL_20S/STAR" -prefix="./exp_alignment_STAR_tags/rna-star/files_bams/$(basename "${read_1%_R?.fastq}")" -echo "${prefix}" - -# Run the alignment -if [[ -f "./submit-STAR-alignReads.tags.rna-star.sh" ]]; then - rm "./submit-STAR-alignReads.tags.rna-star.sh" -fi - -cat << script > "./submit-STAR-alignReads.tags.rna-star.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -# submit-STAR-alignReads.tags.rna-star.sh -# KA - -genome_dir="\${1}" -read_1="\${2}" -read_2="\${3}" -prefix="\${4}" - -#IMPORTANT 1/2 --alignEndsType defaults to "Local"; when we run STAR alignment -#IMPORTANT 2/2 in multi-hit mode, --alignEndsType is set to "EndToEnd" - -# From the STAR manual: -# --alignEndsType -# -# default: Local -# -# string: type of read ends alignment -# -# Local -# standard local alignment with soft-clipping allowed -# EndToEnd -# force end-to-end read alignment, do not soft-clip -# Extend5pOfRead1 -# fully extend only the 5p of the read1, all other ends: local alignment -# Extend5pOfReads12 -# fully extend only the 5p of the both read1 and read2, all other ends: local alignment - -STAR \\ - --runMode alignReads \\ - --runThreadN "\${SLURM_CPUS_ON_NODE}" \\ - --outSAMtype BAM SortedByCoordinate \\ - --outSAMunmapped Within \\ - --outSAMattributes All \\ - --genomeDir "\${genome_dir}" \\ - --readFilesIn "\${read_1}" "\${read_2}" \\ - --outFileNamePrefix "\${prefix}" \\ - --limitBAMsortRAM 4000000000 \\ - --outFilterMultimapNmax 1 \\ - --alignSJoverhangMin 8 \\ - --alignSJDBoverhangMin 1 \\ - --outFilterMismatchNmax 999 \\ - --alignIntronMin 4 \\ - --alignIntronMax 5000 \\ - --alignMatesGapMax 5000 -script - -sbatch ./submit-STAR-alignReads.tags.rna-star.sh \ - "${genome_dir}" \ - "${read_1}" \ - "${read_2}" \ - "${prefix}" - - -# 'multi-hit mode' ----------------------------------------------------------- -read_1="${infiles[0]}" -read_2="${infiles[1]}" -genome_dir="${HOME}/genomes/combined_SC_KL_20S/STAR" -prefix="./exp_alignment_STAR_tags/multi-hit-mode/files_bams/$(basename "${read_1%_R?.fastq}")" -echo "${read_1}" -echo "${read_2}" -echo "${genome_dir}" -echo "${prefix}" - -# Run the alignment -if [[ -f "./submit-STAR-alignReads.tags.multi-hit-mode.sh" ]]; then - rm "./submit-STAR-alignReads.tags.multi-hit-mode.sh" -fi - -cat << script > "./submit-STAR-alignReads.tags.multi-hit-mode.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -# submit-STAR-alignReads.tags.multi-hit-mode.sh -# KA - -genome_dir="\${1}" -read_1="\${2}" -read_2="\${3}" -prefix="\${4}" - -STAR \\ - --runMode alignReads \\ - --runThreadN "\${SLURM_CPUS_ON_NODE}" \\ - --outSAMtype BAM SortedByCoordinate \\ - --outSAMunmapped Within \\ - --outSAMattributes All \\ - --genomeDir "\${genome_dir}" \\ - --readFilesIn "\${read_1}" "\${read_2}" \\ - --outFileNamePrefix "\${prefix}" \\ - --limitBAMsortRAM 4000000000 \\ - --outFilterMultimapNmax 1000 \\ - --winAnchorMultimapNmax 1000 \\ - --alignSJoverhangMin 8 \\ - --alignSJDBoverhangMin 1 \\ - --outFilterMismatchNmax 999 \\ - --outMultimapperOrder Random \\ - --alignEndsType EndToEnd \\ - --alignIntronMin 4 \\ - --alignIntronMax 5000 \\ - --alignMatesGapMax 5000 -script - -sbatch submit-STAR-alignReads.tags.multi-hit-mode.sh \ - "${genome_dir}" \ - "${read_1}" \ - "${read_2}" \ - "${prefix}" - - -# Filtering out unmapped reads ----------------------------------------------- -bam_unfilt="5781_G1_IN_mergedAligned.sortedByCoord.out.bam" -bam_rna_star_unfilt="./exp_alignment_STAR_tags/rna-star/files_bams/${bam_unfilt}" -bam_multi_hit_unfilt="./exp_alignment_STAR_tags/multi-hit-mode/files_bams/${bam_unfilt}" - -samtools index "${bam_rna_star_unfilt}" -samtools index "${bam_multi_hit_unfilt}" - -for i in "${bam_rna_star_unfilt}" "${bam_multi_hit_unfilt}"; do - bash ../../bin/exclude_bam_reads-unmapped.sh \ - -u FALSE \ - -i "${i}" \ - -o "$(dirname ${i})" \ - -f TRUE \ - -t 1 -done - - -# Collect metrics for unfiltered and filtered bam files ---------------------- -source ../../bin/functions.sh - -for i in \ - "${bam_rna_star_unfilt}" "${bam_multi_hit_unfilt}" \ - "${bam_rna_star_unfilt%.bam}.exclude-unmapped.bam" \ - "${bam_multi_hit_unfilt%.bam}.exclude-unmapped.bam"; -do - echo "Working with ${i}" - samtools view -c "${i}" - - list_tally_flags "${i}" - echo "" -done - -cd exp_alignment_STAR_tags/multi-hit-mode/files_bams -samtools flagstat \ - "5781_G1_IN_mergedAligned.sortedByCoord.out.bam" \ - > "5781_G1_IN_mergedAligned.sortedByCoord.out.flagstat.txt" - -cd ../../rna-star/files_bams -samtools flagstat \ - "5781_G1_IN_mergedAligned.sortedByCoord.out.bam" \ - > "5781_G1_IN_mergedAligned.sortedByCoord.out.flagstat.txt" - -``` - -Metrics for unfiltered and filtered `.bam` files -```txt -rna-star/5781_G1_IN_mergedAligned.sortedByCoord.out.bam ----------------------- -counts: 27977684 - - 5276715 77 - 5276715 141 - 4691235 99 - 4691235 147 - 3755353 83 - 3755353 163 - 152761 653 - 152761 589 - 62364 659 - 62364 611 - 50414 675 - 50414 595 - -27446606 + 531078 in total (QC-passed reads + QC-failed reads) -27446606 + 531078 primary -0 + 0 secondary -0 + 0 supplementary -0 + 0 duplicates -0 + 0 primary duplicates -16893176 + 225556 mapped (61.55% : 42.47%) -16893176 + 225556 primary mapped (61.55% : 42.47%) -27446606 + 531078 paired in sequencing -13723303 + 265539 read1 -13723303 + 265539 read2 -16893176 + 225556 properly paired (61.55% : 42.47%) -16893176 + 225556 with itself and mate mapped -0 + 0 singletons (0.00% : 0.00%) -0 + 0 with mate mapped to a different chr -0 + 0 with mate mapped to a different chr (mapQ>=5) - - -multi-hit-mode/5781_G1_IN_mergedAligned.sortedByCoord.out.bam ----------------- -counts: 103982224 - -19947904 419 -19947904 339 -17592378 403 -17592378 355 - 7217716 83 - 7217716 163 - 6168628 99 - 6168628 147 - 336959 77 - 336959 141 - 248130 931 - 248130 851 - 213858 915 - 213858 867 - 94672 675 - 94672 595 - 91403 653 - 91403 589 - 79464 659 - 79464 611 - -102527170 + 1455054 in total (QC-passed reads + QC-failed reads) -27446606 + 531078 primary -75080564 + 923976 secondary -0 + 0 supplementary -0 + 0 duplicates -0 + 0 primary duplicates -101853252 + 1272248 mapped (99.34% : 87.44%) -26772688 + 348272 primary mapped (97.54% : 65.58%) -27446606 + 531078 paired in sequencing -13723303 + 265539 read1 -13723303 + 265539 read2 -26772688 + 348272 properly paired (97.54% : 65.58%) -26772688 + 348272 with itself and mate mapped -0 + 0 singletons (0.00% : 0.00%) -0 + 0 with mate mapped to a different chr -0 + 0 with mate mapped to a different chr (mapQ>=5) - - -rna-star/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam ------ -counts: 17118732 - - 4691235 99 - 4691235 147 - 3755353 83 - 3755353 163 - 62364 659 - 62364 611 - 50414 675 - 50414 595 - -16893176 + 225556 in total (QC-passed reads + QC-failed reads) -16893176 + 225556 primary -0 + 0 secondary -0 + 0 supplementary -0 + 0 duplicates -0 + 0 primary duplicates -16893176 + 225556 mapped (100.00% : 100.00%) -16893176 + 225556 primary mapped (100.00% : 100.00%) -16893176 + 225556 paired in sequencing -8446588 + 112778 read1 -8446588 + 112778 read2 -16893176 + 225556 properly paired (100.00% : 100.00%) -16893176 + 225556 with itself and mate mapped -0 + 0 singletons (0.00% : 0.00%) -0 + 0 with mate mapped to a different chr -0 + 0 with mate mapped to a different chr (mapQ>=5) - - -rna-star/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam ------ -counts: 103125500 - -19947904 419 -19947904 339 -17592378 403 -17592378 355 - 7217716 83 - 7217716 163 - 6168628 99 - 6168628 147 - 248130 931 - 248130 851 - 213858 915 - 213858 867 - 94672 675 - 94672 595 - 79464 659 - 79464 611 - -101853252 + 1272248 in total (QC-passed reads + QC-failed reads) -26772688 + 348272 primary -75080564 + 923976 secondary -0 + 0 supplementary -0 + 0 duplicates -0 + 0 primary duplicates -101853252 + 1272248 mapped (100.00% : 100.00%) -26772688 + 348272 primary mapped (100.00% : 100.00%) -26772688 + 348272 paired in sequencing -13386344 + 174136 read1 -13386344 + 174136 read2 -26772688 + 348272 properly paired (100.00% : 100.00%) -26772688 + 348272 with itself and mate mapped -0 + 0 singletons (0.00% : 0.00%) -0 + 0 with mate mapped to a different chr -0 + 0 with mate mapped to a different chr (mapQ>=5) -``` - - -### Establishing how to call `Trinity` in genome-free and -guided modes -`#DEKHO` - - -#### How Allison called `Trinity` in genome-guided mode -```bash -Trinity \ - --genome_guided_bam "\${file}" \ - --CPU "\${SLURM_CPUS_ON_NODE}" \ - --max_memory 50G \ - --SS_lib_type FR \ - --normalize_max_read_cov 200 \ - --jaccard_clip \ - --genome_guided_max_intron 1002 \ - --min_kmer_cov 2 \ - --max_reads_per_graph 500000 \ - --min_glue 2 \ - --group_pairs_distance 700 \ - --min_contig_length 200 \ - --full_cleanup \ - --output "./trinity_\${file%.bam}" -``` - -Meaning of parameters (copied from my notes [here](#meaning-of-trinity-parameters-used) and expanded upon): -- `--genome_guided_bam`: "If a genome sequence is available, `Trinity` offers a method whereby reads are first aligned to the genome, partitioned according to locus, followed by *de novo* transcriptome assembly at each locus" ([more info](https://github.com/trinityrnaseq/trinityrnaseq/wiki/Genome-Guided-Trinity-Transcriptome-Assembly)) - - "In this use-case, the genome is only being used as a substrate for grouping overlapping reads into clusters that will then be separately fed into Trinity for *de novo* transcriptome assembly." - - "This is very much *unlike* typical genome-guided approaches (e.g., cufflinks) where aligned reads are stitched into transcript structures and where transcript sequences are reconstructed based on the reference genome sequence." - - "Here, transcripts are reconstructed based on the actual read sequences." -- `--max_memory`: suggested max memory to use by Trinity, where limiting can be enabled -- `--SS_lib_type`: if paired, RF or FR (dUTP method = RF); if single, F or R; this means that left-end reads are on the forward strand and right-end reads are on the reverse strand -- `--normalize_max_read_cov`: defaults to 200, an *in silico* read normalization option - - `#QUESTION` Does it mean that it sets the maximum coverage to 200x? - - `#ANSWER` It means that "poorly covered regions \[are\] unchanged, but reads \[are\] down-sampled in high-coverage regions" (see slide 16 [here](https://biohpc.cornell.edu/lab/doc/Trinity_workshop.pdf)) - - "May end up using just 20% of all reads reducing computational burden with no impact on assembly quality" - - `#NOTE` This normalization method has "mixed reviews" – \[it\] tends to skip whole genes -- `--jaccard_clip`: set if you have paired reads and you expect high gene density with UTR overlap ~~(use `.fastq` input file format for reads)~~ - - `#QUESTION` Our input appears to be a bam; does this affect things? - - `#ANSWER` Forget where I saw the answer (probably recorded it somewhere in here or a previous notebook), but the answer is --jaccard_clip is applicable to the `.bam` infile in genome-guided mode -- `--genome_guided_max_intron`: "...use a maximum intron length that makes most sense given your targeted organism" ([more info](https://github.com/trinityrnaseq/trinityrnaseq/wiki/Genome-Guided-Trinity-Transcriptome-Assembly)) -- `--min_kmer_cov`: with a setting of 2, it means that singleton k-mers will not be included in initial Inchworm contigs (suggested by the Trinity team) -- `--max_reads_per_graph`: maximum number of reads to anchor within a single graph (default: 200000) -- `--min_glue`: min number of reads needed to glue two inchworm contigs together. (default: 2) -- `--group_pairs_distance`: maximum length expected between fragment pairs (default: 500) (reads outside this distance are treated as single-end) -- `--min_contig_length`: minimum assembled contig length to report (def=200, must be >= 100) -- `--full_cleanup`: only retain the Trinity fasta file, rename as `${output_dir}.Trinity.fasta` -- `--output`: name of directory for output (will be created if it doesn't already exist) default( your current working directory: `/usr/local/src/trinity_out_dir` note: must include 'trinity' in the name as a safety precaution! ) - - -#### Parameters called out by name in McIlwain et al., *G3* 2016 -```txt ---min_kmer_cov 32 # Inchworm stage ---min_glue 4 # Inchworm stage ---min_iso_ratio 0.01 # Inchworm stage ---glue_factor 0.01 # Chrysalis stage -``` -Meaning of parameters (in some cases, again) -- `--min_kmer_cov`: with a setting of 2, it means that singleton k-mers will not be included in initial Inchworm contigs (suggested by the Trinity team) -- `--min_glue`: min number of reads needed to glue two inchworm contigs together. (default: 2) -- `--min_iso_ratio` - + `#QUESTION` It looks like `--min_iso_ratio` is no longer a tunable parameter, or is it just a hidden parameter? - + `#ANSWER` It looks like it's a hidden parameter (or accidentally not shown) parameter per line 135 of Trinity: `my $min_iso_ratio = 0.05;` - - -##### trinityrnaseq-users Google Group post on the parameters in question -Careful explanation of the parameters `--min_kmer_cov`, `--min_glue`, and `--min_iso_ratio` at [this link](https://groups.google.com/g/trinityrnaseq-users/c/WXgkAFWdNyY/m/1zngojPWAAAJ) -`#TODO` Copy in the relevant text - - -#### `Trinity --show_full_usage_info` - -```txt -############################################################################### -# - - ______ ____ ____ ____ ____ ______ __ __ - | || \ | || \ | || || | | - | || D ) | | | _ | | | | || | | - |_| |_|| / | | | | | | | |_| |_|| ~ | - | | | \ | | | | | | | | | |___, | - | | | . \ | | | | | | | | | | | - |__| |__|\_||____||__|__||____| |__| |____/ - - Trinity-v2.12.0 - - -# -# -# Required: -# -# --seqType :type of reads: ('fa' or 'fq') -# -# --max_memory :suggested max memory to use by Trinity where limiting can be enabled. (jellyfish, sorting, etc) -# provided in Gb of RAM, ie. '--max_memory 10G' -# -# If paired reads: -# --left :left reads, one or more file names (separated by commas, no spaces) -# --right :right reads, one or more file names (separated by commas, no spaces) -# -# Or, if unpaired reads: -# --single :single reads, one or more file names, comma-delimited (note, if single file contains pairs, can use flag: --run_as_paired ) -# -# Or, -# --samples_file tab-delimited text file indicating biological replicate relationships. -# ex. -# cond_A cond_A_rep1 A_rep1_left.fq A_rep1_right.fq -# cond_A cond_A_rep2 A_rep2_left.fq A_rep2_right.fq -# cond_B cond_B_rep1 B_rep1_left.fq B_rep1_right.fq -# cond_B cond_B_rep2 B_rep2_left.fq B_rep2_right.fq -# -# # if single-end instead of paired-end, then leave the 4th column above empty. -# -#################################### -## Misc: ######################### -# -# --include_supertranscripts :yield supertranscripts fasta and gtf files as outputs. -# -# --SS_lib_type :Strand-specific RNA-Seq read orientation. -# if paired: RF or FR, -# if single: F or R. (dUTP method = RF) -# See web documentation. -# -# --CPU :number of CPUs to use, default: 2 -# --min_contig_length :minimum assembled contig length to report -# (def=200) -# -# --long_reads :fasta file containing error-corrected or circular consensus (CCS) pac bio reads -# (** note: experimental parameter **, this functionality continues to be under development) -# -# --genome_guided_bam :genome guided mode, provide path to coordinate-sorted bam file. -# (see genome-guided param section under --show_full_usage_info) -# -# --long_reads_bam :long reads to include for genome-guided Trinity -# (bam file consists of error-corrected or circular consensus (CCS) pac bio read aligned to the genome) -# -# --jaccard_clip :option, set if you have paired reads and -# you expect high gene density with UTR -# overlap (use FASTQ input file format -# for reads). -# (note: jaccard_clip is an expensive -# operation, so avoid using it unless -# necessary due to finding excessive fusion -# transcripts w/o it.) -# -# --trimmomatic :run Trimmomatic to quality trim reads -# see '--quality_trimming_params' under full usage info for tailored settings. -# -# --output :name of directory for output (will be -# created if it doesn't already exist) -# default( your current working directory: "/fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/trinity_out_dir" -# note: must include 'trinity' in the name as a safety precaution! ) -# -# --full_cleanup :only retain the Trinity fasta file, rename as ${output_dir}.Trinity.fasta -# -# --cite :show the Trinity literature citation -# -# --verbose :provide additional job status info during the run. -# -# --version :reports Trinity version (Trinity-v2.12.0) and exits. -# -# --show_full_usage_info :show the many many more options available for running Trinity (expert usage). - -# -# --no_super_reads :turn off super-reads mode -# -# --prep :Only prepare files (high I/O usage) and stop before kmer counting. -# -# --no_cleanup :retain all intermediate input files. -# -# --no_version_check :dont run a network check to determine if software updates are available. -# -# --monitoring :use collectl to monitor all steps of Trinity -# --monitor_sec : number of seconds for each interval of runtime monitoring (default: 60) -# -# --no_distributed_trinity_exec :do not run Trinity phase 2 (assembly of partitioned reads), and stop after generating command list. -# -# --workdir :where Trinity phase-2 assembly computation takes place (defaults to --output setting). -# (can set this to a node-local drive or RAM disk) -# -#################################################### -# Inchworm and K-mer counting-related options: ##### -# -# --min_kmer_cov :min count for K-mers to be assembled by -# Inchworm (default: 1) -# --inchworm_cpu :number of CPUs to use for Inchworm, default is min(6, --CPU option) -# -# --no_run_inchworm :stop after running jellyfish, before inchworm. (phase 1, read clustering only) -# -################################### -# Chrysalis-related options: ###### -# -# --max_reads_per_graph :maximum number of reads to anchor within -# a single graph (default: 200000) -# --min_glue :min number of reads needed to glue two inchworm contigs -# together. (default: 2) -# -# --max_chrysalis_cluster_size :max number of Inchworm contigs to be included in a single Chrysalis cluster. (default: 25) -# -# --no_bowtie :dont run bowtie to use pair info in chrysalis clustering. -# -# --no_run_chrysalis :stop after running inchworm, before chrysalis. (phase 1, read clustering only) -# -##################################### -### Butterfly-related options: #### -# -# --bfly_algorithm : assembly algorithm to use. Options: ORIGINAL PASAFLY -# -# --bfly_opts :additional parameters to pass through to butterfly -# (see butterfly options: java -jar Butterfly.jar ). -# (note: only for expert or experimental use. Commonly used parameters are exposed through this Trinity menu here). -# -# -# Butterfly read-pair grouping settings (used to define 'pair paths'): -# -# --group_pairs_distance :maximum length expected between fragment pairs (default: 500) -# (reads outside this distance are treated as single-end) -# -# /////////////////////////////////////////////// -# Butterfly default reconstruction mode settings. -# -# --path_reinforcement_distance :minimum overlap of reads with growing transcript -# path (default: PE: 25, SE: 25) -# Set to 1 for the most lenient path extension requirements. -# -# -# ///////////////////////////////////////// -# Butterfly transcript reduction settings: -# -# --no_path_merging : all final transcript candidates are output (including SNP variations, however, some SNPs may be unphased) -# -# By default, alternative transcript candidates are merged (in reality, discarded) if they are found to be too similar, according to the following logic: -# -# (identity=(numberOfMatches/shorterLen) > 98.0% or if we have <= 2 mismatches) and if we have internal gap lengths <= 10 -# -# with parameters as: -# -# --min_per_id_same_path default: 98 min percent identity for two paths to be merged into single paths -# --max_diffs_same_path default: 2 max allowed differences encountered between path sequences to combine them -# --max_internal_gap_same_path default: 10 maximum number of internal consecutive gap characters allowed for paths to be merged into single paths. -# -# If, in a comparison between two alternative transcripts, they are found too similar, the transcript with the greatest cumulative -# compatible read (pair-path) support is retained, and the other is discarded. -# -# -# ////////////////////////////////////////////// -# Butterfly Java and parallel execution settings. -# -# --bflyHeapSpaceMax :java max heap space setting for butterfly -# (default: 10G) => yields command -# 'java -Xmx10G -jar Butterfly.jar ... $bfly_opts' -# --bflyHeapSpaceInit :java initial heap space settings for -# butterfly (default: 1G) => yields command -# 'java -Xms1G -jar Butterfly.jar ... $bfly_opts' -# --bflyGCThreads :threads for garbage collection -# (default: 2)) -# --bflyCPU :CPUs to use (default will be normal -# number of CPUs; e.g., 2) -# --bflyCalculateCPU :Calculate CPUs based on 80% of max_memory -# divided by maxbflyHeapSpaceMax -# -# --bfly_jar : /path/to/Butterfly.jar, otherwise default -# Trinity-installed version is used. -# -# -################################################################################ -#### Quality Trimming Options #### -# -# --quality_trimming_params defaults to: "ILLUMINACLIP:/app/software/Trinity/2.12.0-foss-2020b/trinityrnaseq-v2.12.0/trinity-plugins/Trimmomatic/adapters/TruSeq3-PE.fa:2:30:10 SLIDINGWINDOW:4:5 LEADING:5 TRAILING:5 MINLEN:25" -# -################################################################################ -#### In silico Read Normalization Options ### -# -# --normalize_max_read_cov defaults to 200 -# --normalize_by_read_set run normalization separate for each pair of fastq files, -# then one final normalization that combines the individual normalized reads. -# Consider using this if RAM limitations are a consideration. -# -# --just_normalize_reads stop after performing read normalization -# -# --no_normalize_reads :Do *not* run in silico normalization of reads. Defaults to max. read coverage of 200. -# see '--normalize_max_read_cov' under full usage info for tailored settings. -# (Note, as of Sept 21, 2016, normalization is on by default) -# (*Turning off normalization is not recommended for most applications) -# -# --no_parallel_norm_stats :Do not try to run the high-mem normalization stats generator in parallel for paired-end fastqs. -# -############################################################################### -#### Genome-guided de novo assembly -# -# * required: -# -# --genome_guided_max_intron :maximum allowed intron length (also maximum fragment span on genome) -# -# * optional: -# -# --genome_guided_min_coverage :minimum read coverage for identifying and expressed region of the genome. (default: 1) -# -# --genome_guided_min_reads_per_partition :default min of 10 reads per partition -# -# -####################################################################### -# Trinity phase 2 (parallel assembly of read clusters) Options: ####### -# -# --grid_exec :your command-line utility for submitting jobs to the grid. -# This should be a command line tool that accepts a single parameter: -# ${your_submission_tool} /path/to/file/containing/commands.txt -# and this submission tool should exit(0) upon successful -# completion of all commands. -# -# --grid_node_CPU number of threads for each parallel process to leverage. (default: 1) -# -# --grid_node_max_memory max memory targeted for each grid node. (default: 1G) -# -# The --grid_node_CPU and --grid_node_max_memory are applied as -# the --CPU and --max_memory parameters for the Trinity jobs run in -# Trinity Phase 2 (assembly of read clusters) -# -# --FORCE ignore failed commands from earlier run, continue on. -# (Note, this should only be used after you've -# already dealt with these failed commands directly as needed) -# - # -# -############################################################################### -# -# *Note, a typical Trinity command might be: -# -# Trinity --seqType fq --max_memory 50G --left reads_1.fq --right reads_2.fq --CPU 6 -# -# (if you have multiple samples, use --samples_file ... see above for details) -# -# and for Genome-guided Trinity, provide a coordinate-sorted bam: -# -# Trinity --genome_guided_bam rnaseq_alignments.csorted.bam --max_memory 50G -# --genome_guided_max_intron 10000 --CPU 6 -# -# see: /app/software/Trinity/2.12.0-foss-2020b/trinityrnaseq-v2.12.0/sample_data/test_Trinity_Assembly/ -# for sample data and 'runMe.sh' for example Trinity execution -# -# For more details, visit: http://trinityrnaseq.github.io -# -############################################################################### -``` -Additional parameters from the `Trinity` source code (perl script in the GitHub repository base directory) -For example, from looking here: `vi /app/software/Trinity/2.12.0-foss-2020b/trinityrnaseq-v2.12.0/Trinity` -```txt - 517 my $advanced_usage = <<_ADVANCEDUSAGE_; - 518 ################################################################################### - 519 ## Not intended for users, instead for experimentation by developers ## - 520 ################################################################################### - 521 # - 522 # - 523 # Inchworm-related options: - 524 # - 525 # --INCHWORM_CUSTOM_PARAMS :additional parameters to be passed on to Inchworm - 526 # --FORCE_INCHWORM_KMER_METHOD :uses inchworm built-in kmer cataloger instead of jellyfish (not recommended) - 527 # --NO_PARALLEL_IWORM : turn off parallel iworm assembly - 528 # --iworm_opts : options for inchworm - 529 # - 530 # --iworm_cdhit : perform iworm contig database reduction using cdhit - 531 # --__KMER_SIZE : default $KMER_SIZE (do not change unless for experimental usage) - 532 # - 533 # - 534 # Chyrsalis-related options: - 535 # - 536 # --min_pcnt_read_iworm_kmers :min percentage of a read sequence that must be composed of inchworm kmers to be pursued - 537 # by chrysalis (default: $min_percent_read_iworm_kmers) note: off if < 0 - 538 # - 539 # --min_iso_ratio :min fraction of average kmer coverage between two iworm contigs - 540 # required for gluing. (default: $min_iso_ratio) - 541 # --glue_factor :fraction of max (iworm pair coverage) for read glue support (default: $glue_factor) - 542 # - 543 # --max_reads_per_loop :maximum number of reads to read into - 544 # memory at once (default: $max_reads_per_loop) - 545 # --min_pct_read_mapping :minimum percent of a reads kmers that must map to an - 546 # inchworm bundle (aka. component) default: $min_pct_read_mapping - 547 # - 548 # --bowtie_components :use bowtie2 to generate readsToTranscripts mappings - 549 # - 550 # - 551 # Other: - 552 # - 553 # --bypass_java_version_check : skip check for required java version 1.$JAVA_VERSION_REQUIRED - 554 # - 555 # --java_opts : can include any additional custom options to the java command. - 556 # ie. -Djava.io.tmpdir=/path/to/my/custom/tmpdir - 557 # --no_salmon : remove salmon expression filtering - 558 # --min_eff_read_cov : minimum effective read coverage for reconstructed transcript (default: $min_eff_read_cov) - 559 # - 560 # --long_reads_mode : run in long reads mode (requires --single and the long reads integrated with LR$| accession prefixes. - 561 # - 562 # --no_check_coordsorted_bam : in genome-guided mode, won't test the bam file for coordinate-sortedness# - 563 # - 564 # --stomp_snps : stomp snps out of kmers before inchworm assembly - 565 # - 566 # --NO_SUPERTRANS : disable supertranscripts - 567 # - 568 # --NO_SEQTK :disable seqtk for fq->fa conversions, instead use slower perl code - 569 # - 570 - 571 _ADVANCEDUSAGE_ -``` - - -### Practice runs of `Trinity` genome-free and -guided, then running `PASA` -Installing `Trinity`, `PASA`, etc. -- Use `Singularity` to run the [most up-to-date version of `Trinity` (`Docker` or `Singularity` image)](https://data.broadinstitute.org/Trinity/TRINITY_SINGULARITY/) -- Likewise, use `Singularity` to [run the `Docker` image of the `PASA` pipeline](https://github.com/PASApipeline/PASApipeline/wiki/PASA_Docker) -- Information at the following links for running `Docker` images with `Singularity`: - + [FHCC sciwiki: Compute environments section on Docker](https://sciwiki.fredhutch.org/scicomputing/compute_environments/#using-docker-at-fred-hutch) - + [FHCC sciwiki: Singularity](https://sciwiki.fredhutch.org/compdemos/Singularity/) - - -#### The genome-guided run -`#DEKHO` -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -d_work="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" -cd "${d_work}" || echo "Error: cd'ing failed; check on this" - -f_guided="exp_alignment_STAR_tags/multi-hit-mode/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam" -#QUESTION #TODO Have I filtered out alignments to K. lactis and 20 S narnavirus yet? -#ANSWER As of 2022-1122, yes - -Trinity \ - --max_memory 50G \ - --CPU "\${SLURM_CPUS_ON_NODE}" \ - --SS_lib_type FR \ - --genome_guided_bam "\${f_guided}" \ - --genome_guided_max_intron 1002 \ - --jaccard_clip \ - --output "./trinity_genome-guided_\${f_guided%.bam}" \ - --full_cleanup \ - --min_kmer_cov "${N}" \ - --min_iso_ratio "${N}" \ - --min_glue "${N}" \ - --glue_factor "${N}" \ - --max_reads_per_graph "${N}" \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200 -``` - - -#### The genome-free run -```bash -grabnode # Lowest and default settings - -d_work="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" -cd "${d_work}" || echo "Error: cd'ing failed; check on this" - -# f_free_l="files_fastq_symlinks/5781_G1_IN_merged_R1.fastq" #TODO ∆ to file fr/bamToFastq (bedtools) -# f_free_r="files_fastq_symlinks/5781_G1_IN_merged_R2.fastq" #TODO ∆ to file fr/bamToFastq (bedtools) - -Trinity \ - --max_memory 50G \ - --CPU "\${SLURM_CPUS_ON_NODE}" \ - --SS_lib_type FR \ - --genome_guided_bam "\${f_guided}" \ - --genome_guided_max_intron 1002 \ - --jaccard_clip \ - --output "./trinity_genome-guided_\${f_guided%.bam}" \ - --full_cleanup \ - --min_kmer_cov "${N}" \ - --min_iso_ratio "${N}" \ - --min_glue "${N}" \ - --glue_factor "${N}" \ - --max_reads_per_graph "${N}" \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200 -``` -
-
- - -## Miscellaneous - -### Figure out where to put this - -#### Brief discussion with Toshi about yeast blacklists -- He's not aware of any such blacklists for yeast -- He suggested to reach out to Christine and Alison -- He suggested that we could put together a blacklist from ChIP-seq input data - + `#IDEA` Identify binding regions (which should be non-specific since these are input data) present in multiple or all samples -- `#TODO` Skim over the blacklist paper from Anshul Kundaje to understand precisely what the blacklist describes - + e.g., `#QUESTION` Is it non-specific binding, and thus noise, because of something related to the reference, or is it because of something related to the wet-work behind the NGS data? - + `#TODO` I think it is reference-related, but want to confirm -- `#TODO` Look into [the one example of the use of a yeast blacklist I found in the literature]((https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8407396/)) -- Also, discussed the possibility of doing bench-work in the future - + Mentioned how, after tackling the `Trinity` tasks, it'd be a fun and interesting bioinformatics experiment to compare yeast G2/M MicroC data (from the Koshland Lab) to the yeast Q MicroC data (from this lab) - + From there, based on what we find, we could consider to design and perform wet experiments - - -### Google searches and websites to follow up on -- ["add flag to multimapper"](https://www.google.com/search?q=add+flag+to+multimappers&oq=add+flag+to+multimappers&aqs=chrome..69i57j33i160l2.3704j0j7&sourceid=chrome&ie=UTF-8) - + ["SAM FLAG for primary alignments, secondary alignments, and what's their relationships to uniqueness of mapping"](https://www.biostars.org/p/206396/) -- ["use star with trinity"](https://www.google.com/search?q=use+star+with+trinity&oq=use+star+with+trinity&aqs=chrome..69i57j33i160l2.2936j0j7&sourceid=chrome&ie=UTF-8) -- ["ty elements cerevisiae"](https://www.google.com/search?q=ty+elements+cerevisiae&ei=hRJsY_jDKfDL0PEPy9CMqAE&ved=0ahUKEwi4moHt_KH7AhXwJTQIHUsoAxUQ4dUDCBA&uact=5&oq=ty+elements+cerevisiae&gs_lcp=Cgxnd3Mtd2l6LXNlcnAQAzIFCAAQogQyBQgAEKIEMgUIABCiBDIFCAAQogQ6CggAEEcQ1gQQsANKBAhNGAFKBAhBGABKBAhGGABQ9RtYpR1g1yFoAXABeACAAUSIAYYBkgEBMpgBAKABAcgBAsABAQ&sclient=gws-wiz-serp) - + [Ty Elements of the Yeast *Saccharomyces Cerevisiae*](https://www.tandfonline.com/doi/abs/10.1080/13102818.2005.10817272) - + [Transposable elements in yeasts](https://pubmed.ncbi.nlm.nih.gov/21819950/) -- ["repeatmasker yeast"](https://www.google.com/search?q=repeatmasker+yeast&oq=repeatmasker+yeast&aqs=chrome..69i57j0i546l5.5324j0j7&sourceid=chrome&ie=UTF-8) - + [RepeatMasker for Fungi](https://www.biostars.org/p/171368/) -- [Dfam](https://www.dfam.org/home) -- []() `#NOTE What was I looking for here? I think it's using StringTie to build a yeast transcriptome...` - + [Bidirectional terminators in Saccharomyces cerevisiae prevent cryptic transcription from invading neighboring genes](https://academic.oup.com/nar/article/45/11/6417/3106044#119455736) - * In particular, see section *Methods* subsection "Identification of intragenic antisense cryptic transcripts" - - -### Determining maximum intron length in *S. cerevisiae* (2022-1120) -Use [this script from Nathan Weeks](https://github.com/nathanweeks/scripts/blob/master/intron-length.awk) to calculate some summary statistics for introns in *S. cerevisiae* -- Downloaded the script and stored it in `2022_transcriptome-assembly/bin` as `intron-length.awk` -- The script takes as input a `.gff3` file, e.g., `"${HOME}/genomes/sacCer3/Ensembl/108/gff3"` -- More details on the script, looking up intron length [here](https://www.biostars.org/p/212533/#212541) -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" - -gff="${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz" -bin="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/bin" - -chmod +x "${bin}/intron-length.awk" - - -# w/respect to 'CDS' ----------------- -zcat "${gff}" \ - | "${bin}/intron-length.awk" TYPE=CDS SHOW_FLANKING=1 \ - > >(tee -a intron-length.type-CDS.stdout.txt) \ - 2> >(tee -a intron-length.type-CDS.stderr.txt >&2) -# 1 2483 11279 -# min intron (1): -# XV sgd CDS 784857 785687 . + 0 ID=CDS:YOR239W;Parent=transcript:YOR239W_mRNA;protein_id=YOR239W -# XV sgd CDS 785689 786744 . + 0 ID=CDS:YOR239W;Parent=transcript:YOR239W_mRNA;protein_id=YOR239W -# max intron (2483): -# Mito sgd CDS 16435 16470 . + 2 ID=CDS:Q0060;Parent=transcript:Q0060_mRNA;protein_id=Q0060 -# Mito sgd CDS 18954 19996 . + 2 ID=CDS:Q0060;Parent=transcript:Q0060_mRNA;protein_id=Q0060 - - -# w/respect to 'exon' ---------------- -zcat "${gff}" \ - | "${bin}/intron-length.awk" TYPE=exon SHOW_FLANKING=1 \ - > >(tee -a intron-length.type-exon.stdout.txt) \ - 2> >(tee -a intron-length.type-exon.stderr.txt >&2) - -# 1 7635 11279 -# min intron (1): -# XV sgd exon 784857 785687 . + . Parent=transcript:YOR239W_mRNA;Name=YOR239W_mRNA-E1;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=YOR239W_mRNA-E1;rank=1 -# XV sgd exon 785689 786744 . + . Parent=transcript:YOR239W_mRNA;Name=YOR239W_mRNA-E2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=YOR239W_mRNA-E2;rank=2 -# max intron (7635): -# XIV sgd exon 560693 560765 . - . Parent=transcript:tT(AGU)N2_tRNA;Name=tT(AGU)N2_tRNA-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=tT(AGU)N2_tRNA-E1;rank=1 -# XIV sgd exon 568115 568150 . + . Parent=transcript:tP(UGG)N2_tRNA;Name=tP(UGG)N2_tRNA-E1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=tP(UGG)N2_tRNA-E1;rank=1 - -# From the documentation: -# ... -# -# DESCRIPTION -# Reports the minimum intron length, maximum intron length, and the -# maximum sum-of-intron-lengths among all mRNA features. Intron lengths -# are calculated from gaps between features of type TYPE. -# -# OPTIONS -# TYPE -# GFF3 type (3rd-column); valid values are "CDS" and "exon" (default). -# Introns are calculated as gaps between features if this type. -# -# SHOW_FLANKING -# If set to 1, the features of type TYPE flanking the smallest & -# largest introns are output to stderr. The first detected flanking -# features for the given intron size are reported. -# -# WARN_INTRON_LESS_THAN=min_intron_length -# Issue a warning & print flanking features to stderr if an intron -# smaller than min_intron_length is detected. Does not affect the -# reported minimum intron size. -# -# WARN_INTRON_GREATER_THAN=max_intron_length -# Issue a warning & print flanking features to stderr if an intron -# longer than max_intron_length is detected. Does not affect the -# reported maximum intron size. -# -# ... -# -# STDOUT -# Three tab-separated integers: -# MINIMUM_INTRON_LENGTH MAXIMUM_INTRON_LENGTH MAXIMUM_SUM_INTRON_LENGTHS -# -# APPLICATION USAGE -# The output can be used to supply values to the the gmap -# --min-intronlength, --intronlength, and --totallength options. - -# Clean up -mkdir -p exp_intron-length -mv *.std{err,out}.txt exp_intron-length/ -``` - - -### To be continued after the completion of `Trinity` work -Remember, the overarching goal is to have appropriately processed bam files for experiments to determine the best way(s) to call `Trinity` -- `(...)` Continue the TPM work - - `#DONE` Understand what needs to be run before/after what when working with the adapted code base from `slowkow` (the work started in early September, 2022) - - `( )` Adapt [this code](https://gist.github.com/slowkow/c6ab0348747f86e2748b#file-counts_to_tpm-r) -- `(...)` Review notes (e.g., from previous meetings), steps, written-by-me code, and emails (incorporating some into this or another notebook where necessary) prior to Alison's arrival to the lab tomorrow; we-ll likely touch base to talk about things when she comes -- `#DONE` Look into the detection of optical duplicates with `picardmetrics` or just `picard MarkDuplicates` - - `#NOTE` Shouldn't do it with RNA-seq data: [reasoning here](https://gatk.broadinstitute.org/hc/en-us/articles/360036459932-MarkDuplicates-Picard-#--READ_NAME_REGEX) -- `(TBC)` Began to troubleshoot error in which `picardmetrics` could not access the header for `5781_G1_IN_*.bam` in the initial bam directory~~; continue with this tomorrow~~ - - Seems to have to do with this [line of code](https://github.com/slowkow/picardmetrics/blob/master/picardmetrics#L554) -- `(TBC)` Look into the detection and removal of PCR duplicates with UMI-tools as suggested by Alison: Need to figure out what that entails - - Began to look into [this](https://umi-tools.readthedocs.io/en/latest/reference/dedup.html) at the end of the day~~; continue reading up on this tomorrow~~ -- `( )` Continue to build out the alignment and processing script you were working on at the end of last week - + Function-ize it - + Get major modules into separate scripts, which are in-turn function-ized - + get the main work into some kind of driver script - + Etc. - + `(...)` Get an answer to the question, "When splitting a bam from an RNA-seq experiment by strand for visualization (two separate bw files, one for the forward strand, the other for the reverse strand), should the bam be normalized (for example, using one of the normalization options provided by deepTools' `bamCoverage --normalizeUsing`) before or after the split?" - * Asked the question on the [Biostars forum](https://www.biostars.org/p/9543809/); thus far, no response -- `#DONE` Continue to put together a ["master list" of all of Alison's relevant file directories](#updated-list-of-alisons-paths-to-important-directories-and-files) -- `#DONE` Collect information on the [RNA-seq kits used by Alison](#information-on-the-rna-seq-kits-used-by-alison) to generate the libraries - - -### Priorities - -#### Discussion with Alison on what I should prioritize (2022-1103) -- Need to address the important question on **how best to call Trinity** - + For example... - * Are we giving `.bam` or `.fastq` files? - * Are we calling with the Jaccard option? - * Are we running in genome-guided mode? - * Are we running things on one chromosome at a time? -- Downstream of `Trinity` - + "Match Trinity annotations with [Saccharomyces Genome Database (SGD)](https://www.yeastgenome.org/) annotations" - * If an annotation is shared between Trinity and SGD, favor the Trinity annotation `#TODO Seems like some kind of typo here; clarify this` - * If the same, then discard the Trinity annotation, keeping only the Trinity annotation `#TODO Some kind of typo here; clarify this` - * This entails a comparison of `.gtf` files with appropriate logic implemented in the code -- Upstream of `Trinity` - + All lower priority and to be done later; e.g., - * `.bam` file work (`split-bam-by-species.sh`, `split-bam-by-strand.sh`, `bamCoverage`, etc.) - * `.fastq` work (UMI-tools, etc.) - * TPM work - * QC work (e.g., `picardmetrics`) - * etc. -- Parameter that will likely need to change on a per-dataset basis (Alison's thinking) - + "Linker k-mer number may vary from dataset to dataset" - * Could be read-depth dependent - - -### Next steps -- `( Y ) #MONDAY` Pick up with fine-tuning the initial call to `Bowtie2`: *Shifting focus to STAR, a splice-aware aligner* -- `( Y ) #TUESDAY` Use the combined-reference .fasta, .gtf, and genome index files to try aligning one of the (symlinked) .fastq files using the parameters for *S. cerevisiae* you found on the `STAR` Google group - + First, sus out and describe the parameters (for example, are all of them needed, are the values appropriate, etc.?) - + Once this is done, move on to "filtering" the bam file, including isolating unmapped reads, and stripping away chromosomes that are not needed -- `( Y ) #TUESDAY` Do the same with `Bowtie 2` -- `( Y ) #WEDNESDAT` Read over and take notes on the qualifying exam and research update documents sent by Alison -- `( Y ) #WEDNESDAY` Pick up with the assessment of the `Bowtie 2` alignment test #2 experiment: Need to know, from the alignments, what reads are unimappers, multimappers, etc. -- `(...) #TOMORROW` Adjust `STAR` parameters based on the repetitive-element work you did in 2020 -- `( Y ) #THURSDAY` Organize all thoughts on multimappers, messages to/from Trinity Google group, etc.) -- `( ) #STUDYFIRST` Until I hear back from Brian Haas, or if I don't hear back, go ahead and move forward with altered `STAR` parameters (so that we don't have flags in high hundreds and, instead, get readouts more similar to what we see with the `Bowtie 2` test run #2 on 2022-1109) - + `( ) #STUDYFIRST` After that's done, compare the kinds of alignments we're getting between the two aligners and then pick one for subsequent use -- `( ) #STUDYFIRST` After the alignment process is determined, implemented, and completed, move on to writing up code for filtering by chromosomes (build on/expand what you were working on before): Ultimately, we'll start by working with VII of S. cerevisiae -- `( ) #SOMETIME` Continue reading and note-taking based on the messages with Brian Haas; this includes... - + Haas et al. (Wortman), Approaches to Fungal Genome Annotation, Mycology 2011-09, particularly the portions that pertain to - * "Gene structure annotation using transcriptome sequences (2.1.1)" - * Figure 2 - * any mentions of PASA - * "2.7. Annotation of fungal genomes with few spliced genes" - * "2.8. Annotation of non-coding RNA genes" `#MAYBE` - * "Summary" - + [Conversations related to "PASA" on the Trinity Google group](https://groups.google.com/g/trinityrnaseq-users/search?q=pasa), e.g., - * "STAR option for DISCASM" - * "genome guided trinity vs other tools" - * "analysis biological replications" (linked from "Genome-guided Trinity - pooling vs. not pooling bam files?") - * `#TODO` Determine the others - + All (or nearly all) the material associated with the `PASA` wiki (but seems like I have covered most of the relevant material) -- `( ) #SOMETIME` From there, move on to reading and taking notes on [the Harvard "best practices" document](https://informatics.fas.harvard.edu/best-practices-for-de-novo-transcriptome-assembly-with-trinity.html), which will inform the steps you need to take next -- `( ) #SOMETIME` Read and take notes on [this paper sent by Alison](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1406-x#Sec2), which makes use of `Trinity` for *de novo* transcriptome assembly -- `( ) #SOMETIME` Put together a "blacklist" for *S. cerevisiae* - + [Google search for "download bed file for telomere coordinates"](https://www.google.com/search?q=download+bed+file+for+telomere+coordinates&ei=89lrY6zaH8aO0PEPrsGseA&oq=download+telomere+coordinates&gs_lcp=Cgxnd3Mtd2l6LXNlcnAQAxgAMgsIIRDDBBCgARCLAzoKCAAQRxDWBBCwAzoNCCEQwwQQChCgARCLA0oECE0YAUoECEEYAEoECEYYAFClF1i0I2DnM2gBcAF4AIABS4gBzAOSAQE4mAEAoAEByAEIuAEDwAEB&sclient=gws-wiz-serp) - + Christine has `.bed` files in her shared folder - * It seems she got them from the UCSC table browser - * `#TODO` Look into the possibility of getting them from Ensembl - + Already have locations of rDNA from having run `picardmetrics` -- `( Y ) #DONE` Pick up with the comparison between the 'rna-star' Google group calling of STAR and multi-hit mode calling of STAR - + Then, get line-by-line CL-call code written and running for a version of multi-hit mode adapted for yeast - + Also, see how many mismatches Alison et al. are allowing when they call with Bowtie2: Use the info if you can -- `( ) #TODO` Make a separate notebook for Hi-C/MicroC-related things -
-
diff --git a/results/2022-1101/work-Trinity-2.md b/results/2022-1101/work-Trinity-2.md deleted file mode 100644 index 904f13b..0000000 --- a/results/2022-1101/work-Trinity-2.md +++ /dev/null @@ -1,6361 +0,0 @@ - -
-
-Table of contents - - -1. [Miscellaneous](#miscellaneous) -1. [Attempts to set up an environment for `Trinity`, etc.](#attempts-to-set-up-an-environment-for-trinity-etc) - 1. [Attempt #1 \(2022-1121\)](#attempt-1-2022-1121) - 1. [Attempt #2 \(2022-1122\)](#attempt-2-2022-1122) -1. [Filtering `.bam`s to retain only *S. cerevisiae* alignments \(2022-1122\)](#filtering-bams-to-retain-only-s-cerevisiae-alignments-2022-1122) -1. [Do a trial run of `Trinity` genome-guided mode \(2022-1122\)](#do-a-trial-run-of-trinity-genome-guided-mode-2022-1122) -1. [Convert "rna-star" filtered `.bam` files back to `.fastq` files \(2022-1122\)](#convert-rna-star-filtered-bam-files-back-to-fastq-files-2022-1122) -1. [Do a trial run of `Trinity` genome-free mode \(2022-1122\)](#do-a-trial-run-of-trinity-genome-free-mode-2022-1122) - 1. [Organizing the `*.{err,out}.txt` from the trial runs](#organizing-the-errouttxt-from-the-trial-runs) -1. [Follow-up question to Brian Haas](#follow-up-question-to-brian-haas) - 1. [Message from me \(2022-1122\)](#message-from-me-2022-1122) - 1. [Response from Brian Haas \(2022-1122\)](#response-from-brian-haas-2022-1122) -1. [Working out pipelines, `#TODO` lists, etc.](#working-out-pipelines-todo-lists-etc) - 1. [List of `#TODO`s written on 2022-1120](#list-of-todos-written-on-2022-1120) - 1. [Preprocessing pipeline rough draft, 2022-1121](#preprocessing-pipeline-rough-draft-2022-1121) - 1. [Subsequent pipeline draft, 2022-1121](#subsequent-pipeline-draft-2022-1121) - 1. [Building on the pipeline draft and reflecting on next steps, etc., 2022-1122](#building-on-the-pipeline-draft-and-reflecting-on-next-steps-etc-2022-1122) - 1. [Excel file used for parameterization](#excel-file-used-for-parameterization) -1. [Installing `PASA` and `Trinity` with `Singularity`](#installing-pasa-and-trinity-with-singularity) - 1. [More details and instructions for using PASA with Docker](#more-details-and-instructions-for-using-pasa-with-docker) - 1. [Example with test data](#example-with-test-data) - 1. [PASA/Docker Execution Modes \(SQLite or MySQL\)](#pasadocker-execution-modes-sqlite-or-mysql) - 1. [Docker using SQLite](#docker-using-sqlite) - 1. [MySQL internally within Docker](#mysql-internally-within-docker) - 1. [Local MySQL outside Docker Container](#local-mysql-outside-docker-container) -1. [On handling file access with `Singularity`](#on-handling-file-access-with-singularity) - 1. [Testing system-defined bind paths in `Singularity`](#testing-system-defined-bind-paths-in-singularity) - 1. [Try mounting some datasets needed for running `PASA` \(`Singularity`\)](#try-mounting-some-datasets-needed-for-running-pasa-singularity) -1. [Try a trial run of `Singularity` `PASA`](#try-a-trial-run-of-singularity-pasa) - 1. [Working through the first few steps of `PASA` Wiki \(2022-1124\)](#working-through-the-first-few-steps-of-pasa-wiki-2022-1124) - 1. [Documentation, details for `PASA`'s' `Launch_PASA_pipeline.pl`, including `*.config`](#documentation-details-for-pasas-launch_pasa_pipelinepl-including-config) - 1. [Attempt to call `Launch_PASA_pipeline.pl` \(2022-1124\)](#attempt-to-call-launch_pasa_pipelinepl-2022-1124) - 1. [Troubleshooting the errors from calling `Launch_PASA_pipeline.pl`](#troubleshooting-the-errors-from-calling-launch_pasa_pipelinepl) - 1. [Message from me \(2022-1124\)](#message-from-me-2022-1124) - 1. [Response from Brian Haas \(2022-1125\)](#response-from-brian-haas-2022-1125) - 1. [Attempt to call `Launch_PASA_pipeline.pl` following Brian Haas' advice \(2022-1125\)](#attempt-to-call-launch_pasa_pipelinepl-following-brian-haas-advice-2022-1125) - 1. [Again, troubleshooting the errors from calling `Launch_PASA_pipeline.pl`](#again-troubleshooting-the-errors-from-calling-launch_pasa_pipelinepl) - 1. [Subsequent message to Brian after encountering another error \(2022-1125\)](#subsequent-message-to-brian-after-encountering-another-error-2022-1125) - 1. [Response from Brian \(2022-1125\)](#response-from-brian-2022-1125) - 1. [Follow-up from me \(2022-1125\)](#follow-up-from-me-2022-1125) - 1. [Follow-up response from Brian \(2022-1125\)](#follow-up-response-from-brian-2022-1125) - 1. [Attempt to continue `Launch_PASA_pipeline.pl` following Brian Haas' advice \(2022-1126\)](#attempt-to-continue-launch_pasa_pipelinepl-following-brian-haas-advice-2022-1126) - 1. [Understanding `tmux` on FHCC `rhino`](#understanding-tmux-on-fhcc-rhino) - 1. [Set things up, get into the work directory](#set-things-up-get-into-the-work-directory) - 1. [Drawing on Brian's advice/testing out `singularity --bind` arguments](#drawing-on-brians-advicetesting-out-singularity---bind-arguments) - 1. [Continuing the `PASA` pipeline from where it left off yesterday](#continuing-the-pasa-pipeline-from-where-it-left-off-yesterday) - 1. [Checking on output from completion of the `PASA` pipeline](#checking-on-output-from-completion-of-the-pasa-pipeline) -1. [Setting up the preprocessing pipeline for `Trinity`](#setting-up-the-preprocessing-pipeline-for-trinity) - 1. [Getting started \(2022-1125, 2022-1126\)](#getting-started-2022-1125-2022-1126) - 1. [Set up the STAR alignment steps and sub-steps \(2022-1126\)](#set-up-the-star-alignment-steps-and-sub-steps-2022-1126) - 1. [Set up `STAR` alignment for genome-free assembly \(2022-1126\)](#set-up-star-alignment-for-genome-free-assembly-2022-1126) - 1. [Set up `STAR` alignment for genome-guided assembly \(2022-1126\)](#set-up-star-alignment-for-genome-guided-assembly-2022-1126) - 1. [Filter `.bam`s to retain only *S. cerevisiae* alignments \(2022-1128\)](#filter-bams-to-retain-only-s-cerevisiae-alignments-2022-1128) - 1. [Perform another quality check with `FastQC` \(2022-1128\)](#perform-another-quality-check-with-fastqc-2022-1128) - 1. [Convert the species-filtered `.bam`s from genome-free alignment to `.fastq`s](#convert-the-species-filtered-bams-from-genome-free-alignment-to-fastqs) - 1. [Perform a `FastQC` quality check for the new `.fastq` files \(2022-1128\)](#perform-a-fastqc-quality-check-for-the-new-fastq-files-2022-1128) - 1. [Remove erroneous k-mers from reads with `rCorrector` and "correct" the outfiles](#remove-erroneous-k-mers-from-reads-with-rcorrector-and-correct-the-outfiles) - 1. [Remove erroneous k-mers from paired-end reads with `rCorrector`](#remove-erroneous-k-mers-from-paired-end-reads-with-rcorrector) - 1. [Discard `rcorrector`-processed read pairs for which one read is deemed unfixable](#discard-rcorrector-processed-read-pairs-for-which-one-read-is-deemed-unfixable) - 1. [Troubleshoot errors associated with the `rcorrector`-correction scripts \(2022-1128-1129\)](#troubleshoot-errors-associated-with-the-rcorrector-correction-scripts-2022-1128-1129) - 1. [Continue work to discard `rcorrector`-processed read pairs that are "unfixable" \(2022-1129\)](#continue-work-to-discard-rcorrector-processed-read-pairs-that-are-unfixable-2022-1129) - 1. [Next steps following the successful completion of `rCorrector` treatment and correction \(2022-1129\)](#next-steps-following-the-successful-completion-of-rcorrector-treatment-and-correction-2022-1129) - 1. [Get `SLURM` submission scripts set up for `rCorrector` and "correction of `rCorrector`" \(2022-1130\)](#get-slurm-submission-scripts-set-up-for-rcorrector-and-correction-of-rcorrector-2022-1130) - 1. [...for `rCorrector`](#for-rcorrector) - 1. [...for "correction of `rCorrector`" \(2022-1130-1201\)](#for-correction-of-rcorrector-2022-1130-1201) - 1. [Run `FastQC` on the `.fastq`s from `rCorrector` and "`rCorrector` correction"](#run-fastqc-on-the-fastqs-from-rcorrector-and-rcorrector-correction) -1. [Notes, thoughts, and next steps, 2022-1201-1202](#notes-thoughts-and-next-steps-2022-1201-1202) - - -
-
- -`#TODO` Organize or delete this later -
-
- - -## Miscellaneous -Couldn't really find much on "super-reads mode", which is something I found in the documentation for `Trinity v2.12.0`, nor did I find much on `--no_super_reads`: super-reads mode seems to be something happening by default according to the source code, at least in `Trinity v2.12.0` - -Potentially interesting links/resources (from [Google search for "cerevisiae trinity assembly"](https://www.google.com/search?q=cerevisiae+trinity+assembly&oq=cerevisiae+trinity+assembly&aqs=chrome..69i57j33i160l4.353j0j7&sourceid=chrome&ie=UTF-8)) -- [Compare *de novo* reconstructed transcripts to reference annotations](https://ycl6.gitbook.io/rna-seq-data-analysis/de_novo_assembly_using_trinity/compare_de_novo_reconstructed_transcripts_to_reference_annotations) -- [Assessing transcriptome assembly quality](https://southgreenplatform.github.io/trainings/trinityTrinotate/TP-trinity/#practice-3) - + Getting basic assembly metrics with the `Trinity` script `TrinityStats.pl` - + Reads mapping back rate and abundance estimation using the `Trinity` script `align_and_estimate_abundance.pl` - + Expression matrix construction - + Compute N50 based on the top-most highly expressed transcripts (Ex50) - + Quantifying completeness using BUSCO - + `BLASTX` comparison to known protein sequences database - + *Other sections before and after the above* -- [Assemblage de-novo de transcriptome Trinity](https://ressources.france-bioinformatique.fr/sites/default/files/A01_Galaxy_RNASeq_denovo_ITMO2016_0.pdf) - + Training from Ecole ITMO 2016 - + Contains a lot of useful information; for example, info for preprocessing - + Interesting explanations of parameters, especially for butterfly stage `#TODO` Study this later -- [Example of a yeast study using standard parameters for `Trinity`](https://www.sciencedirect.com/science/article/pii/S0888754321000288#ec0005) -- [An example of using StringTie with yeast](https://www.biostars.org/p/296555/) -- [On the meaning of N50](https://www.biostars.org/p/723/) - -Before we even start tooling with the parameters, it is likely more important to clean the data -- See the FAS Informatics [*Best Practices* document]() -- See also the pertinent slides [here](https://ressources.france-bioinformatique.fr/sites/default/files/A01_Galaxy_RNASeq_denovo_ITMO2016_0.pdf) - -~~Should I get cutadapt set up now...?~~ No, use `Trim Galore` (following the FAS Informatics [*Best Practices* document]()) - -`#QUESTION` Are forward reads left and reverse reads right? `#ANSWER` I don't know--probably -
-
- - -## Attempts to set up an environment for `Trinity`, etc. - -### Attempt #1 (2022-1121) -- Creating an environment for `Trinity`, with related work -- So many failures... - -
-Command line calls and notes - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -d_work="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" -cd "${d_work}" || echo "Error: cd'ing failed; check on this" - -mamba create -n Trinity_env -c bioconda trinity -# Success - -echo 'alias Trinity_env="conda activate Trinity_env"' >> ~/.bash_aliases -alias Trinity_env="conda activate Trinity_env" -Trinity_env - -mamba install -c bioconda pasa # rcorrector cutadapt fastqc -# Encountered problems while solving: -# - nothing provides perl 5.22.0* needed by pasa-2.3.3-pl5.22.0r3.4.1_0 - -mamba install -c bioconda pasa=2.5.2 -# Encountered problems while solving: -# - nothing provides libgcc-ng >=12 needed by pasa-2.5.2-h87f3376_0 - -mamba search -c anaconda libgcc-ng # No versions >=12 -mamba install -c bioconda rcorrector # cutadapt fastqc -# Success - -mamba install -c bioconda cutadapt # fastqc -# Encountered problems while solving: -# - nothing provides python 3.4* needed by cutadapt-1.10-py34_0 - -mamba search -c bioconda cutadapt -# Success - -mamba install -c bioconda cutadapt=4.1 -# Encountered problems while solving: -# - nothing provides libgcc-ng >=12 needed by cutadapt-4.1-py310h1425a21_1 - -mamba search -c conda-forge libgcc-ng # Several versions >12 -mamba install -c conda-forge libgcc-ng=12.2.0 # Latest -# Success: _openmp_mutex downgraded from 5.1 to 4.5 - -mamba install -c bioconda cutadapt=4.1 -# Pinned packages: -# - python 3.8.* -# -# Encountered problems while solving: -# - nothing provides python_abi 3.10.* *_cp310 needed by cutadapt-4.1-py310h1425a21_1 - -mamba install -c bioconda pasa=2.5.2 -# Pinned packages: -# - python 3.8.* -# -# Encountered problems while solving: -# - nothing provides libstdcxx-ng >=12 needed by pasa-2.5.2-h87f3376_0 - -mamba install -c bioconda fastqc -# Success - -# Install libstdcxx-ng, python_abi 3.10.* -mamba search -c conda-forge libstdcxx-ng # Several versions >12 -mamba install -c conda-forge libstdcxx-ng=12.2.0 - -mamba install -c bioconda pasa=2.5.2 -# Encountered problems while solving: -# - package pasa-2.5.2-h87f3376_0 requires lighttpd, but none of the providers can be installed - -mamba install -c conda-forge lighttpd -# Success (couple packages downgraded) - -mamba install -c bioconda pasa=2.5.2 -# Encountered problems while solving: -# - package libnghttp2-1.46.0-hce63b2e_0 requires openssl >=1.1.1l,<1.1.2a, but none of the providers can be installed - -mamba search -c conda-forge openssl -mamba install -c conda-forge openssl=1.1.1m - -mamba install -c bioconda pasa=2.5.2 # Weird because 1.1.1m -# Encountered problems while solving: -# - package libnghttp2-1.47.0-h727a467_0 requires openssl >=1.1.1l,<1.1.2a, but none of the providers can be installed - -mamba search -c conda-forge openssl -mamba install -c conda-forge openssl=1.1.1s - -mamba install -c bioconda pasa=2.5.2 # Weird because 1.1.1s -# Encountered problems while solving: -# - package libnghttp2-1.47.0-h727a467_0 requires openssl >=1.1.1l,<1.1.2a, but none of the providers can be installed - -mamba update -c conda-forge libnghttp2 -# Encountered problems while solving: -# - package libnghttp2-1.47.0-hdcd2b5c_1 requires openssl >=1.1.1q,<1.1.2a, but none of the providers can be installed - -mamba install -c conda-forge openssl=1.1.1q - -mamba install -c bioconda pasa=2.5.2 # Weird because 1.1.1s -# Encountered problems while solving: -# - package libnghttp2-1.47.0-hdcd2b5c_1 requires openssl >=1.1.1q,<1.1.2a, but none of the providers can be installed - -mamba search -c conda-forge libnghttp2 -# ... -#+ Consider using Singularity to install PASA - -mamba install -c bioconda cutadapt=4.1 -# Encountered problems while solving: -# - nothing provides python_abi 3.10.* *_cp310 needed by cutadapt-4.1-py310h1425a21_1 - -mamba search -c conda-forge python_abi -mamba install -c conda-forge python_abi=3.11 -# Encountered problems while solving: -# - package python_abi-3.11-2_cp311 requires python 3.11.*, but none of the providers can be installed - -mamba search -c conda-forge python -mamba install -c conda-forge python=3.10.8 -# Encountered problems while solving: -# - package bowtie2-2.4.1-py38he513fc3_0 requires python >=3.8,<3.9.0a0, but none of the providers can be installed - -#NOTE Cutadapt 4.1 is not possible without changing Bowtie2 and then potentially... Wait, what version of Trinity is this? - -which Trinity -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/Trinity - -Trinity --version -# Trinity version: Trinity-v2.9.1 -# ** NOTE: Latest version of Trinity is Trinity-v2.14.0, and can be obtained at: -# https://github.com/trinityrnaseq/trinityrnaseq/releases - -# Delete the environment and try installing Trinity and PASA using Singularity -``` -`#NOTE` Deleted the environment -
- - -### Attempt #2 (2022-1122) -- Have determined to install `Trinity` and `PASA` via `Singularity` (with `.simg` files made from the `Docker` images) -- The following packages will be installed into an environment, `Trinity_env`, using `conda` - + `Trim Galore` - * [`conda`](https://anaconda.org/bioconda/trim-galore) - + `rCorrector` - * [`conda`](https://anaconda.org/bioconda/rcorrector) - + `STAR` `#MAYBE` - * [`conda`](https://anaconda.org/bioconda/star) - + `FastQC` - * [`conda`](https://anaconda.org/bioconda/fastqc) - + `bedtools` - * [`bedtools`](https://anaconda.org/bioconda/bedtools) - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -d_work="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" -cd "${d_work}" || echo "Error: cd'ing failed; check on this" - -mamba search -c bioconda trim-galore -mamba search -c bioconda star -mamba search -c bioconda rcorrector -mamba search -c bioconda fastqc -mamba search -c bioconda bedtools - -mamba create \ - -n Trinity_env \ - -c bioconda \ - trim-galore rcorrector star fastqc bedtools -# + _libgcc_mutex 0.1 main pkgs/main/linux-64 Cached -# + _openmp_mutex 5.1 1_gnu pkgs/main/linux-64 Cached -# + bedtools 2.30.0 h7d7f7ad_2 bioconda/linux-64 18 MB -# + bz2file 0.98 py37h06a4308_1 pkgs/main/linux-64 245 KB -# + bzip2 1.0.8 h7b6447c_0 pkgs/main/linux-64 Cached -# + ca-certificates 2022.10.11 h06a4308_0 pkgs/main/linux-64 Cached -# + certifi 2022.9.24 py37h06a4308_0 pkgs/main/linux-64 Cached -# + cutadapt 2.6 py37h516909a_0 bioconda/linux-64 173 KB -# + dbus 1.13.18 hb2f20db_0 pkgs/main/linux-64 Cached -# + dnaio 0.3 py37h14c3975_1 bioconda/linux-64 129 KB -# + expat 2.4.9 h6a678d5_0 pkgs/main/linux-64 Cached -# + fastqc 0.11.9 hdfd78af_1 bioconda/noarch Cached -# + font-ttf-dejavu-sans-mono 2.37 hd3eb1b0_0 pkgs/main/noarch Cached -# + fontconfig 2.13.1 hef1e5e3_1 pkgs/main/linux-64 Cached -# + freetype 2.12.1 h4a9f257_0 pkgs/main/linux-64 Cached -# + gdbm 1.18 hd4cb3f1_4 pkgs/main/linux-64 Cached -# + glib 2.69.1 h4ff587b_1 pkgs/main/linux-64 Cached -# + icu 58.2 he6710b0_3 pkgs/main/linux-64 Cached -# + kmer-jellyfish 2.3.0 h9f5acd7_3 bioconda/linux-64 Cached -# + ld_impl_linux-64 2.38 h1181459_1 pkgs/main/linux-64 Cached -# + libffi 3.3 he6710b0_2 pkgs/main/linux-64 Cached -# + libgcc-ng 11.2.0 h1234567_1 pkgs/main/linux-64 Cached -# + libgomp 11.2.0 h1234567_1 pkgs/main/linux-64 Cached -# + libpng 1.6.37 hbc83047_0 pkgs/main/linux-64 Cached -# + libstdcxx-ng 11.2.0 h1234567_1 pkgs/main/linux-64 Cached -# + libuuid 1.41.5 h5eee18b_0 pkgs/main/linux-64 Cached -# + libxcb 1.15 h7f8727e_0 pkgs/main/linux-64 Cached -# + libxml2 2.9.14 h74e7548_0 pkgs/main/linux-64 Cached -# + ncurses 6.3 h5eee18b_3 pkgs/main/linux-64 Cached -# + openjdk 11.0.13 h87a67e3_0 pkgs/main/linux-64 Cached -# + openssl 1.1.1s h7f8727e_0 pkgs/main/linux-64 Cached -# + pcre 8.45 h295c915_0 pkgs/main/linux-64 Cached -# + perl 5.34.0 h5eee18b_2 pkgs/main/linux-64 Cached -# + pigz 2.6 h27cfd23_0 pkgs/main/linux-64 70 KB -# + pip 22.2.2 py37h06a4308_0 pkgs/main/linux-64 Cached -# + python 3.7.15 haa1d7c7_0 pkgs/main/linux-64 41 MB -# + rcorrector 1.0.4 h2e03b76_2 bioconda/linux-64 Cached -# + readline 8.2 h5eee18b_0 pkgs/main/linux-64 Cached -# + setuptools 65.5.0 py37h06a4308_0 pkgs/main/linux-64 1 MB -# + sqlite 3.39.3 h5082296_0 pkgs/main/linux-64 Cached -# + star 2.7.10b h9ee0642_0 bioconda/linux-64 5 MB -# + tk 8.6.12 h1ccaba5_0 pkgs/main/linux-64 Cached -# + trim-galore 0.6.7 hdfd78af_0 bioconda/noarch 42 KB -# + wheel 0.37.1 pyhd3eb1b0_0 pkgs/main/noarch Cached -# + xopen 0.7.3 py_0 bioconda/noarch 11 KB -# + xz 5.2.6 h5eee18b_0 pkgs/main/linux-64 Cached -# + zlib 1.2.13 h5eee18b_0 pkgs/main/linux-64 Cached - -# Check w/r/t/mamba search results (in separate tab) -#+ - STAR is up-to-date -#+ - Trim Galore is up-to-date -#+ - rcorrector is at version 1.0.4=h2e03b76_2; the most up-to-date version is 1.0.5=h5b5514e_0 -#+ - difference between 1.0.4 and 1.0.5 described here: github.com/mourisl/Rcorrector/pull/36 -#+ - #OPINION Should be OK to move forward with 1.0.4 -#+ - Unlikely to encounter described error -#+ - FastqQC is up-to-date -#+ - bedtools is up-to-date - -# Successfully installed everything to set up the environment -Trinity_env # It works because already present in .bash_aliases (yesterday) - - -# # Go ahead and add samtools; goal is to have a compute environment in which -# #+ nothing is loaded from FHCC Bioinformatics -# mamba search -c bioconda samtools -# mamba install -c bioconda samtools # Cancel because... -# # Package Version Build Channel Size -# # ───────────────────────────────────────────────────────────────────────── -# # Install: -# # ───────────────────────────────────────────────────────────────────────── -# # -# # + c-ares 1.18.1 h7f8727e_0 pkgs/main/linux-64 Cached -# # + htslib 1.13 h9093b5e_0 bioconda/linux-64 Cached -# # + krb5 1.19.2 hac12032_0 pkgs/main/linux-64 Cached -# # + libcurl 7.85.0 h91b91d3_0 pkgs/main/linux-64 Cached -# # + libdeflate 1.7 h27cfd23_5 pkgs/main/linux-64 Cached -# # + libedit 3.1.20210714 h7f8727e_0 pkgs/main/linux-64 Cached -# # + libev 4.33 h7f8727e_1 pkgs/main/linux-64 Cached -# # + libnghttp2 1.46.0 hce63b2e_0 pkgs/main/linux-64 Cached -# # + libssh2 1.10.0 h8f2d780_0 pkgs/main/linux-64 Cached -# # + samtools 1.13 h8c37831_0 bioconda/linux-64 Cached -# # -# # Downgrade: -# # ───────────────────────────────────────────────────────────────────────── -# # -# # - ncurses 6.3 h5eee18b_3 installed -# # + ncurses 6.2 he6710b0_1 pkgs/main/linux-64 Cached -# # - python 3.7.15 haa1d7c7_0 installed -# # + python 3.7.11 h12debd9_0 pkgs/main/linux-64 45 MB -# # - readline 8.2 h5eee18b_0 installed -# # + readline 8.1 h27cfd23_0 pkgs/main/linux-64 Cached -# -# # Installing an outdated version of samtools, i.e., 1.13 instead of 1.16.1 -# -# mamba install -c bioconda samtools=1.16.1 -# # Pinned packages: -# # - python 3.7.* -# # -# # Encountered problems while solving: -# # - nothing provides libgcc-ng >=12 needed by samtools-1.16.1-h6899075_0 -``` -
-
- - -## Filtering `.bam`s to retain only *S. cerevisiae* alignments (2022-1122) -`#QUESTION` Haven't I done this yet? I wrote `split_bam_by_species.sh`, but have I run it with respect to the "rna-star" and "multi-hit-mode" `.bam` files yet? -`#ANSWER` I have run a few tests in which most of the outfiles were `rm`'d -- One outfile for a `.bam` composed of only *S. cerevisiae* chromosomes is present in `"${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_alignment_STAR/files_bams"` -- There are no such `.bam` files in the subdirectories of `"${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_alignment_STAR_tags"` -- ∴ Do this work for the two `{multi-hit-mode,rna-star}/files_bams/*.exclude-unmapped.bam` files in `/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_alignment_STAR_tags` - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Take two cores; otherwise, use default settings - -d_work="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" -cd "${d_work}" || echo "Error: cd'ing failed; check on this" - -module load SAMtools/1.16.1-GCC-11.2.0 - - -# .bam from "multi-hit-mode" (separate tab) ---------------------------------- -threads=2 -d_multi="exp_alignment_STAR_tags/multi-hit-mode/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam" - -samtools index -@ 2 "${d_multi}" - -# Doing the following based on work fixing split_bam_by_species.sh below in -#+ the section for "rna-star" -if [[ -f "$(dirname "${d_multi}")/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.split_SC_all.bam" ]]; then - # ls -lhaFG "$(dirname "${d_multi}")/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.split_SC_all.bam" - rm "$(dirname "${d_multi}")/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.split_SC_all.bam" -fi - -ls -lhaFG "$(dirname "${d_multi}")" -# total 9.2G -# drwxrws--- 3 kalavatt 847 Nov 22 08:45 ./ -# drwxrws--- 3 kalavatt 28 Nov 21 12:22 ../ -# -rw-rw---- 1 kalavatt 4.3G Nov 18 14:58 5781_G1_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 82K Nov 18 15:02 5781_G1_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 3.4G Nov 18 15:19 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 79K Nov 22 08:09 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 595 Nov 18 15:20 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flagstat.txt -# -rw-rw---- 1 kalavatt 194 Nov 18 15:32 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 589 Nov 18 15:49 5781_G1_IN_mergedAligned.sortedByCoord.out.flagstat.txt -# -rw-rw---- 1 kalavatt 241 Nov 18 15:27 5781_G1_IN_mergedAligned.sortedByCoord.out.flags.txt -# -rw-rw---- 1 kalavatt 2.0K Nov 18 14:58 5781_G1_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.3K Nov 18 14:58 5781_G1_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 836 Nov 18 14:58 5781_G1_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 129K Nov 18 14:57 5781_G1_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 18 14:58 5781_G1_IN_merged_STARtmp/ - -unset filters -filters=( - "SC_all" - "KL_all" - "virus_20S" -) -for i in "${filters[@]}"; do - bash ../../bin/split_bam_by_species.sh \ - -u FALSE \ - -i "${d_multi}" \ - -o "$(dirname "${d_multi}")" \ - -s "${i}" \ - -t "${threads}" -done -#NOTES Took more than 10 minutes to run for 'SC_all'... - -# Index the filtered .bam files -for i in "${filters[@]}"; do - samtools index -@ "${threads}" \ - "$(dirname "${d_multi}")/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.${i}.bam" -done - -ls -lhaFG "$(dirname "${d_multi}")" -# total 14G -# drwxrws--- 3 kalavatt 1.4K Nov 22 09:05 ./ -# drwxrws--- 3 kalavatt 28 Nov 21 12:22 ../ -# -rw-rw---- 1 kalavatt 4.3G Nov 18 14:58 5781_G1_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 82K Nov 18 15:02 5781_G1_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 3.4G Nov 18 15:19 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 79K Nov 22 08:09 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 595 Nov 18 15:20 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flagstat.txt -# -rw-rw---- 1 kalavatt 194 Nov 18 15:32 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 207M Nov 22 09:03 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.KL_all.bam -# -rw-rw---- 1 kalavatt 16K Nov 22 09:05 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.KL_all.bam.bai -# -rw-rw---- 1 kalavatt 3.1G Nov 22 09:02 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam -# -rw-rw---- 1 kalavatt 64K Nov 22 09:05 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam.bai -# -rw-rw---- 1 kalavatt 778K Nov 22 09:03 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.virus_20S.bam -# -rw-rw---- 1 kalavatt 280 Nov 22 09:05 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.virus_20S.bam.bai -# -rw-rw---- 1 kalavatt 589 Nov 18 15:49 5781_G1_IN_mergedAligned.sortedByCoord.out.flagstat.txt -# -rw-rw---- 1 kalavatt 241 Nov 18 15:27 5781_G1_IN_mergedAligned.sortedByCoord.out.flags.txt -# -rw-rw---- 1 kalavatt 2.0K Nov 18 14:58 5781_G1_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.3K Nov 18 14:58 5781_G1_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 836 Nov 18 14:58 5781_G1_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 129K Nov 18 14:57 5781_G1_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 18 14:58 5781_G1_IN_merged_STARtmp/ - - -# .bam from "rna-star" (separate tab) ---------------------------------------- -threads=2 -d_normal="exp_alignment_STAR_tags/rna-star/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam" - -samtools index -@ 2 "${d_normal}" - -if [[ -f "$(dirname "${d_normal}")/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.split_SC_all.bam" ]]; then - # ls -lhaFG "$(dirname "${d_normal}")/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.split_SC_all.bam" - rm "$(dirname "${d_normal}")/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.split_SC_all.bam" -fi -bash ../../bin/split_bam_by_species.sh \ - -u FALSE \ - -i "${d_normal}" \ - -o "$(dirname "${d_normal}")" \ - -s SC_all \ - -t "${threads}" - -bash ../../bin/split_bam_by_species.sh \ - -u FALSE \ - -i "${d_normal}" \ - -o "$(dirname "${d_normal}")" \ - -s KL_all \ - -t "${threads}" - -bash ../../bin/split_bam_by_species.sh \ - -u FALSE \ - -i "${d_normal}" \ - -o "$(dirname "${d_normal}")" \ - -s virus_20S \ - -t "${threads}" - -ls -lhaFG "$(dirname "${d_normal}")" -# total 2.5G -# drwxrws--- 3 kalavatt 941 Nov 22 08:13 ./ -# drwxrws--- 3 kalavatt 28 Nov 21 12:22 ../ -# -rw-rw---- 1 kalavatt 1.2G Nov 18 14:39 5781_G1_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 59K Nov 18 15:01 5781_G1_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 608M Nov 18 15:06 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 22 08:10 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 577 Nov 18 15:06 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flagstat.txt -# -rw-rw---- 1 kalavatt 94 Nov 18 15:27 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 815K Nov 22 08:17 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.split_SC_all.bam -# -rw-rw---- 1 kalavatt 573 Nov 18 15:49 5781_G1_IN_mergedAligned.sortedByCoord.out.flagstat.txt -# -rw-rw---- 1 kalavatt 141 Nov 18 15:22 5781_G1_IN_mergedAligned.sortedByCoord.out.flags.txt -# -rw-rw---- 1 kalavatt 2.0K Nov 18 14:39 5781_G1_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 7.9K Nov 18 14:39 5781_G1_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 364 Nov 18 14:39 5781_G1_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 46K Nov 18 14:39 5781_G1_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 18 14:39 5781_G1_IN_merged_STARtmp/ - -#FIXME 1/4 The output of the above three commands seems to be all be saved as -#FIXME 2/4 *.split_SC_all.bam; for example, from the SC_all command, size of -#FIXME 3/4 the .bam file was 568M and, from the virus_20S command, the .bam -#FIXME 4/4 file size is 815K; ∴, need to fix split_bam_by_species.sh -#DONE Try again - -filters=( - "SC_all" - "KL_all" - "virus_20S" -) -for i in "${filters[@]}"; do - bash ../../bin/split_bam_by_species.sh \ - -u FALSE \ - -i "${d_normal}" \ - -o "$(dirname "${d_normal}")" \ - -s "${i}" \ - -t "${threads}" -done -#NOTE Runs very quickly - -ls -lhaFG "$(dirname "${d_normal}")" -# total 3.2G -# drwxrws--- 3 kalavatt 1.3K Nov 22 08:27 ./ -# drwxrws--- 3 kalavatt 28 Nov 21 12:22 ../ -# -rw-rw---- 1 kalavatt 1.2G Nov 18 14:39 5781_G1_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 59K Nov 18 15:01 5781_G1_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 815K Nov 22 08:27 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.20S.bam -# -rw-rw---- 1 kalavatt 40M Nov 22 08:27 '5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.A B C D E F.bam' -# -rw-rw---- 1 kalavatt 608M Nov 18 15:06 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 22 08:10 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 577 Nov 18 15:06 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flagstat.txt -# -rw-rw---- 1 kalavatt 94 Nov 18 15:27 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 568M Nov 22 08:27 '5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito.bam' -# -rw-rw---- 1 kalavatt 815K Nov 22 08:17 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.split_SC_all.bam -# -rw-rw---- 1 kalavatt 573 Nov 18 15:49 5781_G1_IN_mergedAligned.sortedByCoord.out.flagstat.txt -# -rw-rw---- 1 kalavatt 141 Nov 18 15:22 5781_G1_IN_mergedAligned.sortedByCoord.out.flags.txt -# -rw-rw---- 1 kalavatt 2.0K Nov 18 14:39 5781_G1_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 7.9K Nov 18 14:39 5781_G1_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 364 Nov 18 14:39 5781_G1_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 46K Nov 18 14:39 5781_G1_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 18 14:39 5781_G1_IN_merged_STARtmp/ - -#FIXME The "fix" to split_bam_by_species.sh is not quite right... -#DONE Try again... - -rm "$(dirname "${d_normal}")/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.split_SC_all.bam" - -for i in "${filters[@]}"; do - bash ../../bin/split_bam_by_species.sh \ - -u FALSE \ - -i "${d_normal}" \ - -o "$(dirname "${d_normal}")" \ - -s "${i}" \ - -t "${threads}" -done -#NOTE Runs very quickly - -ls -lhaFG "$(dirname "${d_normal}")" -# total 3.9G -# drwxrws--- 3 kalavatt 1.4K Nov 22 08:31 ./ -# drwxrws--- 3 kalavatt 28 Nov 21 12:22 ../ -# -rw-rw---- 1 kalavatt 1.2G Nov 18 14:39 5781_G1_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 59K Nov 18 15:01 5781_G1_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 815K Nov 22 08:27 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.20S.bam -# -rw-rw---- 1 kalavatt 40M Nov 22 08:27 '5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.A B C D E F.bam' -# -rw-rw---- 1 kalavatt 608M Nov 18 15:06 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 22 08:10 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 577 Nov 18 15:06 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flagstat.txt -# -rw-rw---- 1 kalavatt 94 Nov 18 15:27 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 568M Nov 22 08:27 '5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito.bam' -# -rw-rw---- 1 kalavatt 40M Nov 22 08:31 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.KL_all.bam -# -rw-rw---- 1 kalavatt 568M Nov 22 08:31 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam -# -rw-rw---- 1 kalavatt 815K Nov 22 08:31 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.virus_20S.bam -# -rw-rw---- 1 kalavatt 573 Nov 18 15:49 5781_G1_IN_mergedAligned.sortedByCoord.out.flagstat.txt -# -rw-rw---- 1 kalavatt 141 Nov 18 15:22 5781_G1_IN_mergedAligned.sortedByCoord.out.flags.txt -# -rw-rw---- 1 kalavatt 2.0K Nov 18 14:39 5781_G1_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 7.9K Nov 18 14:39 5781_G1_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 364 Nov 18 14:39 5781_G1_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 46K Nov 18 14:39 5781_G1_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 18 14:39 5781_G1_IN_merged_STARtmp/ - -#NOTE split_bam_by_species.sh is fixed now; remove the files with weird names -rm "$(dirname "${d_normal}")/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito.bam" -rm "$(dirname "${d_normal}")/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.A B C D E F.bam" -rm "$(dirname "${d_normal}")/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.20S.bam" - -# Index the filtered .bam files -for i in "${filters[@]}"; do - samtools index -@ "${threads}" \ - "$(dirname "${d_normal}")/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.${i}.bam" -done - -ls -lhaFG "$(dirname "${d_normal}")" -# total 3.2G -# drwxrws--- 3 kalavatt 1.4K Nov 22 08:53 ./ -# drwxrws--- 3 kalavatt 28 Nov 21 12:22 ../ -# -rw-rw---- 1 kalavatt 1.2G Nov 18 14:39 5781_G1_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 59K Nov 18 15:01 5781_G1_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 608M Nov 18 15:06 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 22 08:10 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 577 Nov 18 15:06 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flagstat.txt -# -rw-rw---- 1 kalavatt 94 Nov 18 15:27 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 40M Nov 22 08:31 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.KL_all.bam -# -rw-rw---- 1 kalavatt 16K Nov 22 08:53 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.KL_all.bam.bai -# -rw-rw---- 1 kalavatt 568M Nov 22 08:31 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam -# -rw-rw---- 1 kalavatt 41K Nov 22 08:53 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam.bai -# -rw-rw---- 1 kalavatt 815K Nov 22 08:31 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.virus_20S.bam -# -rw-rw---- 1 kalavatt 280 Nov 22 08:53 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.virus_20S.bam.bai -# -rw-rw---- 1 kalavatt 573 Nov 18 15:49 5781_G1_IN_mergedAligned.sortedByCoord.out.flagstat.txt -# -rw-rw---- 1 kalavatt 141 Nov 18 15:22 5781_G1_IN_mergedAligned.sortedByCoord.out.flags.txt -# -rw-rw---- 1 kalavatt 2.0K Nov 18 14:39 5781_G1_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 7.9K Nov 18 14:39 5781_G1_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 364 Nov 18 14:39 5781_G1_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 46K Nov 18 14:39 5781_G1_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 18 14:39 5781_G1_IN_merged_STARtmp/ - -#TODO #LATER 1/2 Get *.flags.txt, *.flagstat.txt, and FastQC output for the -#TODO #LATER 2/2 filtered .bam files -``` -
-
- - -## Do a trial run of `Trinity` genome-guided mode (2022-1122) -...use the "multi-hit-mode" *S. cerevisiae*-only `.bam` -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -# Define variables -d_work="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" -d_guided="${d_work}/exp_alignment_STAR_tags/multi-hit-mode/files_bams" -f_guided="${d_guided}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam" -prefix_0="Trinity_trial" -prefix_1="genome-guided" -prefix_2="$(echo $(basename "${f_guided}") | cut -d . -f 5)" -prefix="${prefix_0}_${prefix_1}_${prefix_2}" -intron=1002 -script="submit-Trinity-trial-genome-guided.sh" -d_master="${d_work}/exp_${prefix_0}" -d_exp="${d_master}/exp_${prefix}" - -# Change and set up directories -cd "${d_work}" || echo "Error: cd'ing failed; check on this" -[[ -d "${d_exp}" ]] || mkdir -p "${d_exp}" - -# For now, use the latest version of Trinity available via FHCC Bioinformatics -ml Trinity/2.12.0-foss-2020b - -# Generate the job-submission script -if [[ -f "${script}" ]]; then rm "${script}"; fi -cat << script > "${script}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=6 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -infile="\${1}" -intron="\${2}" -outdir="\${3}" -prefix="\${4}" - -echo "echo test:" -echo -e "Trinity \\ \n\ - --max_memory 50G \\ \n\ - --CPU "\${SLURM_CPUS_ON_NODE}" \\ \n\ - --SS_lib_type FR \\ \n\ - --genome_guided_bam "\${infile}" \\ \n\ - --genome_guided_max_intron "\${intron}" \\ \n\ - --jaccard_clip \\ \n\ - --output "\${outdir}/\${prefix}" \\ \n\ - --full_cleanup \\ \n\ - --min_kmer_cov 1 \\ \n\ - --min_iso_ratio 0.05 \\ \n\ - --min_glue 2 \\ \n\ - --glue_factor 0.05 \\ \n\ - --max_reads_per_graph 2000 \\ \n\ - --normalize_max_read_cov 200 \\ \n\ - --group_pairs_distance 700 \\ \n\ - --min_contig_length 200" - -Trinity \\ - --max_memory 50G \\ - --CPU "\${SLURM_CPUS_ON_NODE}" \\ - --SS_lib_type FR \\ - --genome_guided_bam "\${infile}" \\ - --genome_guided_max_intron "\${intron}" \\ - --jaccard_clip \\ - --output "\${outdir}/\${prefix}" \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200 -script -# vi "${script}" - -# bash "${script}" "${f_guided}" "${intron}" "${d_exp}" "${prefix}" -# After running, tweaking, and rerunning, here's how the "echo test" looks -# echo test: -# Trinity \ -# --max_memory 50G \ -# --CPU \ -# --SS_lib_type FR \ -# --genome_guided_bam /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_alignment_STAR_tags/multi-hit-mode/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam \ -# --genome_guided_max_intron 1002 \ -# --jaccard_clip \ -# --output /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_Trinity_trial/exp_Trinity_trial_genome-guided_SC_all/Trinity_trial_genome-guided_SC_all \ -# --full_cleanup \ -# --min_kmer_cov 1 \ -# --min_iso_ratio 0.05 \ -# --min_glue 2 \ -# --glue_factor 0.05 \ -# --max_reads_per_graph 2000 \ -# --normalize_max_read_cov 200 \ -# --group_pairs_distance 700 \ -# --min_contig_length 200 - -# Now, in the HEREDOC, uncomment the call to Trinity; does it start? -bash "${script}" "${f_guided}" "${intron}" "${d_exp}" "${prefix}" - -# It starts to run... ^C the job and take a look at things: -#+ -#+ The directory "exp_trinity_trial_genome-guided_SC_all/" was made in "$(pwd)" -#+ and not in "exp_Trinity_trial/" as expected, and there's a .bam outfile in -#+ "exp_Trinity_trial/exp_Trinity_trial_genome-guided_SC_all/" -#+ -#+ Now, run it on SLURM -sbatch "${script}" "${f_guided}" "${intron}" "${d_exp}" "${prefix}" -# It seems to be running successfully -``` -
-
- - -## Convert "rna-star" filtered `.bam` files back to `.fastq` files (2022-1122) -
-Documentation for bamToFastq and samtools fastq - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -which bedtools -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/bedtools - -bamToFastq -# Tool: bedtools bamtofastq (aka bamToFastq) -# Version: v2.30.0 -# Summary: Convert BAM alignments to FASTQ files. -# -# Usage: bamToFastq [OPTIONS] -i -fq -# -# Options: -# -fq2 FASTQ for second end. Used if BAM contains paired-end data. -# BAM should be sorted by query name is creating paired FASTQ. -# -# -tags Create FASTQ based on the mate info -# in the BAM R2 and Q2 tags. -# -# Tips: -# If you want to create a single, interleaved FASTQ file -# for paired-end data, you can just write both to /dev/stdout: -# -# bedtools bamtofastq -i x.bam -fq /dev/stdout -fq2 /dev/stdout > x.ilv.fq -# -# Also, the samtools fastq command has more fucntionality and is a useful alternative. - -ml SAMtools/1.16.1-GCC-11.2.0 -samtools fastq -# Usage: samtools fastq [options...] -# -# Description: -# Converts a SAM, BAM or CRAM to FASTQ format. -# -# Options: -# -0 FILE write reads designated READ_OTHER to FILE -# -1 FILE write reads designated READ1 to FILE -# -2 FILE write reads designated READ2 to FILE -# -o FILE write reads designated READ1 or READ2 to FILE -# note: if a singleton file is specified with -s, only -# paired reads will be written to the -1 and -2 files. -# -f INT only include reads with all of the FLAGs in INT present [0] -# -F INT only include reads with none of the FLAGS in INT present [0x900] -# -G INT only EXCLUDE reads with all of the FLAGs in INT present [0] -# -n don't append /1 and /2 to the read name -# -N always append /1 and /2 to the read name -# -O output quality in the OQ tag if present -# -s FILE write singleton reads designated READ1 or READ2 to FILE -# -t copy RG, BC and QT tags to the FASTQ header line -# -T TAGLIST copy arbitrary tags to the FASTQ header line, '*' for all -# -v INT default quality score if not given in file [1] -# -i add Illumina Casava 1.8 format entry to header (eg 1:N:0:ATCACG) -# -c INT compression level [0..9] to use when writing bgzf files [1] -# --i1 FILE write first index reads to FILE -# --i2 FILE write second index reads to FILE -# --barcode-tag TAG -# Barcode tag [BC] -# --quality-tag TAG -# Quality tag [QT] -# --index-format STR -# How to parse barcode and quality tags -# -# --input-fmt-option OPT[=VAL] -# Specify a single input file format option in the form -# of OPTION or OPTION=VALUE -# --reference FILE -# Reference sequence FASTA FILE [null] -# -@, --threads INT -# Number of additional threads to use [0] -# --verbosity INT -# Set level of verbosity -# -# The files will be automatically compressed if the file names have a .gz -# or .bgzf extension. The input to this program must be collated by name. -# Run 'samtools collate' or 'samtools sort -n' to achieve this. -# -# Reads are designated READ1 if FLAG READ1 is set and READ2 is not set. -# Reads are designated READ2 if FLAG READ1 is not set and READ2 is set. -# Otherwise reads are designated READ_OTHER (both flags set or both flags unset). -# Run 'samtools flags' for more information on flag codes and meanings. -# -# The index-format string describes how to parse the barcode and quality tags. -# It is made up of 'i' or 'n' followed by a length or '*'. For example: -# i14i8 The first 14 characters are index 1, the next 8 are index 2 -# n8i14 Ignore the first 8 characters, and use the next 14 for index 1 -# -# If the tag contains a separator, then the numeric part can be replaced with -# '*' to mean 'read until the separator or end of tag', for example: -# i*i* Break the tag at the separator into index 1 and index 2 -# n*i* Ignore the left part of the tag until the separator, -# then use the second part of the tag as index 1 -# -# Examples: -# To get just the paired reads in separate files, use: -# samtools fastq -1 pair1.fq -2 pair2.fq -0 /dev/null -s /dev/null -n in.bam -# -# To get all non-supplementary/secondary reads in a single file, redirect -# the output: -# samtools fastq in.bam > all_reads.fq -``` -
-
- -Rather than `bamToFastq`, move forward with `samtools fastq`, full documentation for which is found [here](http://www.htslib.org/doc/samtools-fasta.html) - + It appears that the `.bam` infile needs to be QNAME-sorted prior to running the program - + At least we can use `samtools sort -n` with parallelization to speed sorting up - + Additional related details and issues are discussed in [this GitHub Issues post from 2019](https://github.com/samtools/samtools/issues/1014) - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -d_work="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" -cd "${d_work}" || echo "cd'ing into \${d_work} failed; check on this" - -d_exp="exp_alignment_STAR_tags/rna-star/files_bams" -f_exp="${d_exp}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam" -f_bam="${d_exp}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.sort-n.bam" -f_pre="$(echo "$(basename "${f_bam}")" | cut -d "." -f 1-5)" -threads=1 - -ml SAMtools/1.16.1-GCC-11.2.0 - -source ../../bin/functions.sh - -sort_bam_qname() { - # Run samtools sort -n on bam infile - # - # :param 1: number of threads for parallelization = 1> - # :param 2: bam infile, including path - # :param 3: bam outfile, including path - start="$(date +%s)" - - samtools sort -n -@ "${1}" "${2}" > "${3}" & - display_spinning_icon $! \ - "Running samtools sort -n on $(basename "${2}")... " - - end="$(date +%s)" - calculate_run_time "${start}" "${end}" \ - "Ran samtools sort -n on $(basename "${2}")." -} - - -convert_bam_fastq() { - # Run samtools fastq on QNAME-sorted paired-end bam infile - # - # :param 1: number of threads for parallelization = 1> - # :param 2: QNAME-sorted paired-end bam infile, including path - # :param 3: outdirectory, including path - # :param 4: prefix for outfiles - start="$(date +%s)" - - samtools fastq \ - -@ "${1}" \ - -1 "${3}/${4}.1.fq.gz" \ - -2 "${3}/${4}.2.fq.gz" \ - "${2}" & - display_spinning_icon $! \ - "Running samtools fastq on $(basename "${2}")... " - - end="$(date +%s)" - calculate_run_time "${start}" "${end}" \ - "Ran samtools fastq on $(basename "${2}")." -} - - -sort_bam_qname "${threads}" "${f_exp}" "${f_bam}" -# ls -lhaFG "${f_bam}" - -if [[ -f "${f_bam}" ]]; then - convert_bam_fastq "${threads}" "${f_bam}" "${d_exp}" "${f_pre}" -fi -# Run time: 0h:0m:46s # Nice - -ls -lhaFG "${d_exp}" -# total 5.0G -# drwxrws--- 3 kalavatt 1.7K Nov 22 13:13 ./ -# drwxrws--- 3 kalavatt 28 Nov 21 12:22 ../ -# -rw-rw---- 1 kalavatt 1.2G Nov 18 14:39 5781_G1_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 59K Nov 18 15:01 5781_G1_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 608M Nov 18 15:06 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 22 08:10 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 577 Nov 18 15:06 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flagstat.txt -# -rw-rw---- 1 kalavatt 94 Nov 18 15:27 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 40M Nov 22 08:31 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.KL_all.bam -# -rw-rw---- 1 kalavatt 16K Nov 22 08:53 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.KL_all.bam.bai -# -rw-rw---- 1 kalavatt 309M Nov 22 13:14 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.1.fq.gz -# -rw-rw---- 1 kalavatt 320M Nov 22 13:14 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.2.fq.gz -# -rw-rw---- 1 kalavatt 568M Nov 22 08:31 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam -# -rw-rw---- 1 kalavatt 41K Nov 22 08:53 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam.bai -# -rw-rw---- 1 kalavatt 850M Nov 22 12:54 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.sort-n.bam -# -rw-rw---- 1 kalavatt 815K Nov 22 08:31 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.virus_20S.bam -# -rw-rw---- 1 kalavatt 280 Nov 22 08:53 5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.virus_20S.bam.bai -# -rw-rw---- 1 kalavatt 573 Nov 18 15:49 5781_G1_IN_mergedAligned.sortedByCoord.out.flagstat.txt -# -rw-rw---- 1 kalavatt 141 Nov 18 15:22 5781_G1_IN_mergedAligned.sortedByCoord.out.flags.txt -# -rw-rw---- 1 kalavatt 2.0K Nov 18 14:39 5781_G1_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 7.9K Nov 18 14:39 5781_G1_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 364 Nov 18 14:39 5781_G1_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 46K Nov 18 14:39 5781_G1_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 18 14:39 5781_G1_IN_merged_STARtmp/ - - -# Check on the numbers of reads and alignments ------------------------------- -# Now need to check that the number of reads in the fastq files equals the -#+ number of alignments in the bam file -no_fq1="$(echo $(zcat "${d_exp}/${f_pre}.1.fq.gz" | wc -l)/4 | bc)" -echo "${no_fq1}" # 8048121 - -no_fq2="$(echo $(zcat "${d_exp}/${f_pre}.2.fq.gz" | wc -l)/4 | bc)" -echo "${no_fq2}" # 8048121 - -no_bam="$(samtools view -c "${f_bam}")" -echo "${no_bam}" # 16096242 - -echo $(( no_fq1 + no_fq2 )) # 16096242 - - -# What do the reads look like? ----------------------------------------------- -zcat "${d_exp}/${f_pre}.1.fq.gz" | head -12 -@HISEQ:1007:HGV5NBCX3:1:1101:1183:28197 -# CTAGANCTCCAGCTAACGCNNNNNNNNNNNCTTCTNCCNNNNNNNANCAN -# + -# GGGGG# -
- - -## Do a trial run of `Trinity` genome-free mode (2022-1122) -...using the "rna-star" *S. cerevisiae*-only `.bam`-to-`.fastq` files -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -# Define variables -d_work="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" -d_free="${d_work}/exp_alignment_STAR_tags/rna-star/files_bams" -f_free_1="${d_free}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.1.fq.gz" -f_free_2="${d_free}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.2.fq.gz" -prefix_0="Trinity_trial" -prefix_1="genome-free" -prefix_2="$(echo $(basename "${f_free}") | cut -d . -f 5)" -prefix="${prefix_0}_${prefix_1}_${prefix_2}" -intron=1002 -script="submit-Trinity-trial-genome-free.sh" -d_master="${d_work}/exp_${prefix_0}" -d_exp="${d_master}/exp_${prefix}" - -echo "${d_work}" -echo "${d_free}" -echo "${f_free_1}" -echo "${f_free_2}" -echo "${prefix_0}" -echo "${prefix_1}" -echo "${prefix_2}" -echo "${prefix}" -echo "${intron}" -echo "${script}" -echo "${d_master}" -echo "${d_exp}" - -ls -lhaFG "${d_work}" -ls -lhaFG "${d_free}" -ls -lhaFG "${f_free_1}" -ls -lhaFG "${f_free_2}" -ls -lhaFG "${d_master}" - -# Change and set up directories -cd "${d_work}" || echo "Error: cd'ing failed; check on this" -[[ -d "${d_exp}" ]] || mkdir -p "${d_exp}" - -# For now, use the latest version of Trinity available via FHCC Bioinformatics -ml Trinity/2.12.0-foss-2020b - -# Generate the job-submission script -if [[ -f "${script}" ]]; then rm "${script}"; fi -cat << script > "${script}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=6 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -infile_1="\${1}" -infile_2="\${2}" -outdir="\${3}" -prefix="\${4}" - -echo "echo test:" -echo -e "Trinity \\ \n\ - --max_memory 50G \\ \n\ - --CPU "\${SLURM_CPUS_ON_NODE}" \\ \n\ - --SS_lib_type FR \\ \n\ - --seqType fq \\ \n\ - --left "\${infile_1}" \\ \n\ - --right "\${infile_2}" \\ \n\ - --jaccard_clip \\ \n\ - --output "\${outdir}/\${prefix}" \\ \n\ - --full_cleanup \\ \n\ - --min_kmer_cov 1 \\ \n\ - --min_iso_ratio 0.05 \\ \n\ - --min_glue 2 \\ \n\ - --glue_factor 0.05 \\ \n\ - --max_reads_per_graph 2000 \\ \n\ - --normalize_max_read_cov 200 \\ \n\ - --group_pairs_distance 700 \\ \n\ - --min_contig_length 200" - -Trinity \\ - --max_memory 50G \\ - --CPU "\${SLURM_CPUS_ON_NODE}" \\ - --SS_lib_type FR \\ - --seqType fq \\ - --left "\${infile_1}" \\ - --right "\${infile_2}" \\ - --jaccard_clip \\ - --output "\${outdir}/\${prefix}" \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200 -script -vi "${script}" - -bash "${script}" "${f_free_1}" "${f_free_2}" "${d_exp}" "${prefix}" -# After running, tweaking, and rerunning, here's how the "echo test" looks -# echo test: -# Trinity \ -# --max_memory 50G \ -# --CPU 1 \ -# --SS_lib_type FR \ -# --seqType fq \ -# --left /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_alignment_STAR_tags/rna-star/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.1.fq.gz \ -# --right /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_alignment_STAR_tags/rna-star/files_bams/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.2.fq.gz \ -# --jaccard_clip \ -# --output /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_Trinity_trial/exp_Trinity_trial_genome-free_SC_all/Trinity_trial_genome-free_SC_all \ -# --full_cleanup \ -# --min_kmer_cov 1 \ -# --min_iso_ratio 0.05 \ -# --min_glue 2 \ -# --glue_factor 0.05 \ -# --max_reads_per_graph 2000 \ -# --normalize_max_read_cov 200 \ -# --group_pairs_distance 700 \ -# --min_contig_length 200 - -# Now, in the HEREDOC, uncomment the call to Trinity; does it start? -bash "${script}" "${f_free_1}" "${f_free_2}" "${d_exp}" "${prefix}" - -# It starts to run... ^C the job and take a look at things: -#+ -#+ The outdirectory contains stuff... Clean it out and then run on SLURM -sbatch "${script}" "${f_free_1}" "${f_free_2}" "${d_exp}" "${prefix}" -# It seems to be running successfully -``` - - -### Organizing the `*.{err,out}.txt` from the trial runs -```bash -#!/bin/bash -#DONTRUN - -grabnode # Default and lowest settings - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" - -mv *.{err,out}.txt exp_Trinity_trial/ -``` -
-
- - -## Follow-up question to Brian Haas -- The message and response are at [this link](https://groups.google.com/g/trinityrnaseq-users/c/DWctG7wLNYY) -- `#TODO` Get these messages into a suitable location in `work-Trinity.md` - - -### Message from me (2022-1122) -Thanks again for the advice and input. For genome-guided assembly that leverages multimapped reads, I'm using a bam file from having run STAR like this: -```bash -STAR \ - --runMode alignReads \ - --runThreadN "${SLURM_CPUS_ON_NODE}" \ - --outSAMtype BAM SortedByCoordinate \ - --outSAMattributes All \ - --genomeDir "${genome_dir}" \ - --readFilesIn "${read_1}" "${read_2}" \ - --outFileNamePrefix "${prefix}" \ - --limitBAMsortRAM 4000000000 \ - --outFilterMultimapNmax 1000 \ - --winAnchorMultimapNmax 1000 \ - --alignSJoverhangMin 8 \ - --alignSJDBoverhangMin 1 \ - --outFilterMismatchNmax 999 \ - --outMultimapperOrder Random \ - --alignEndsType EndToEnd \ - --alignIntronMin 4 \ - --alignIntronMax 5000 \ - --alignMatesGapMax 5000 -``` -With the parameter `--outFilterMultimapNmax 1000`, the vast majority of multimapping alignments remain in the bam outfile from STAR. I just want to make sure I'm not missing or misinterpreting anything you've communicated in this thread: is this bam suitable for genome-guided assembly that makes use of multimapped reads? - -Thanks, -Kris - - -### Response from Brian Haas (2022-1122) -Trinity should work with whatever coordinate-sorted bam you give it, but I question the need for including so many multimapping reads. The main use of having multimappmers included is to handle cases where you have a handful of paralogs that might benefit from having shared read content represented at each locus. -
-
- - -## Working out pipelines, `#TODO` lists, etc. - -### List of `#TODO`s written on 2022-1120 -Has been put on hold until I get hands-on experience with preprocessing, `Trinity`-`PASA`, etc. -drawing - - -### Preprocessing pipeline rough draft, 2022-1121 -drawing - - -### Subsequent pipeline draft, 2022-1121 -Includes preprocessing and Trinity-PASA work -drawing - - -### Building on the pipeline draft and reflecting on next steps, etc., 2022-1122 -drawing -drawing - - -### Excel file used for parameterization -Excel file... -[Excel file for Trinity parameters to use and potentially test](notebook/trinity-parameters.xlsx) -
-
- - -## Installing `PASA` and `Trinity` with `Singularity` - -
-Failed attempt to use spython to install PASA - -```bash -#!/bin/bash -#DONTRUN #REMOTE - -# Get started ---------------------------------------------------------------- -grabnode # Lowest and default settings - -pwd -# /home/kalavatt - -ml Singularity -# # module list -# Currently Loaded Modules: -# 1) Go/1.14 2) Singularity/3.5.3 - - -# Create a directory for *.simg files, Dockerfiles, etc.; store them there --- -ls -lhaFG -# ... - -mkdir -p singularity-docker-etc/PASA - -mv *.sif *.def singularity-docker-etc/ -# renamed 'lolcow_latest.sif' -> 'singularity-docker-etc/lolcow_latest.sif' -# renamed 'my_r_container.sif' -> 'singularity-docker-etc/my_r_container.sif' -# renamed 'r-base-latest.sif' -> 'singularity-docker-etc/r-base-latest.sif' -# renamed 'my.r.singularity.build.def' -> 'singularity-docker-etc/my.r.singularity.build.def' - - -# Get the Dockerfile for PASA, then build a Singularity image from it -------- -cd singularity-docker-etc/PASA - -curl https://raw.githubusercontent.com/PASApipeline/PASApipeline/master/Docker/Dockerfile \ - > Dockerfile -curl https://raw.githubusercontent.com/PASApipeline/PASApipeline/master/Docker/conf.txt \ - > conf.txt - -# Follow the instructions here for building the image: -#+ stackoverflow.com/questions/60314664/how-to-build-singularity-container-from-dockerfile -#+ -#+ In particular, see answer #2, which makes use of the package `spython` -#+ (Singularity Python), which can be obtained and installed via conda -Trinity_env -mamba install -c conda-forge spython - -if [[ -f PASA.def ]]; then rm PASA.def; fi -spython recipe Dockerfile &> PASA.def -# vi PASA.def -# Looks normal enough... - -singularity build --remote PASA.sif PASA.def -# INFO: Access Token Verified! -# INFO: Token stored in /root/.singularity/remote.yaml -# INFO: Remote "cloud.sylabs.io" now in use. -# INFO: Starting build... -# Getting image source signatures -# Copying blob sha256:eaead16dc43bb8811d4ff450935d607f9ba4baffda4fc110cc402fa43f601d83 -# Copying config sha256:498ea54ecd93159ae59a589d67d98eee003628516c0679a65ca60d03abfd744a -# Writing manifest to image destination -# Storing signatures -# 2022/11/23 19:43:37 info unpack layer: sha256:eaead16dc43bb8811d4ff450935d607f9ba4baffda4fc110cc402fa43f601d83 -# INFO: Copying conf.txt to /usr/local/src/PASApipeline/pasa_conf/ -# FATAL: While performing build: unable to copy files from host to container fs: no source files found matching: conf.txt -# FATAL: While performing build: build image size <= 0 - -# # vi PASA.def -# Bootstrap: docker -# From: ubuntu:20.04 -# Stage: spython-base -# -# %files -# conf.txt /usr/local/src/PASApipeline/pasa_conf/ -# %labels -# maintainer="bhaas@broadinstitute.org" -# %post -# ... - - -# stackoverflow.com/questions/11145270/how-to-replace-an-entire-line-in-a-text-file-by-line-number -cp PASA.def bak.PASA.def -sed -i '6s/.*/conf.txt \./' PASA.def -# # vi PASA.def -# Bootstrap: docker -# From: ubuntu:20.04 -# Stage: spython-base -# -# %files -# conf.txt . -# %labels -# maintainer="bhaas@broadinstitute.org" -# %post - -singularity build --remote PASA.sif PASA.def -# INFO: Starting build... -# INFO: Setting maximum build duration to 1h0m0s -# INFO: Remote "cloud.sylabs.io" added. -# INFO: Access Token Verified! -# INFO: Token stored in /root/.singularity/remote.yaml -# INFO: Remote "cloud.sylabs.io" now in use. -# INFO: Starting build... -# Getting image source signatures -# Copying blob sha256:eaead16dc43bb8811d4ff450935d607f9ba4baffda4fc110cc402fa43f601d83 -# Copying config sha256:498ea54ecd93159ae59a589d67d98eee003628516c0679a65ca60d03abfd744a -# Writing manifest to image destination -# Storing signatures -# 2022/11/23 19:51:38 info unpack layer: sha256:eaead16dc43bb8811d4ff450935d607f9ba4baffda4fc110cc402fa43f601d83 -# INFO: Copying conf.txt to . -# FATAL: While performing build: unable to copy files from host to container fs: no source files found matching: conf.txt -# FATAL: While performing build: build image size <= 0 - -# This is not working... - -``` -
-
- -
-Local installation of PASA with Docker - -Try installing `PASA` locally via `Docker` to see if this gives any insight into building it with `Singularity` on the HPC; following the instructions [here](https://github.com/PASApipeline/PASApipeline/wiki/PASA_Docker) -```bash -#!/bin/bash -#DONTRUN #LOCAL - -docker pull pasapipeline/pasapipeline -# Using default tag: latest -# latest: Pulling from pasapipeline/pasapipeline -# 16ec32c2132b: Pull complete -# b7372f0e4c7e: Pull complete -# 4b6435ab903e: Pull complete -# bb3ed4ec7a4c: Pull complete -# a43d589f1366: Pull complete -# aa307d929b17: Pull complete -# d3c331b9da8c: Pull complete -# 39c12f722616: Pull complete -# a67b60493205: Pull complete -# ea4c9a29c838: Pull complete -# 95726cd7985a: Pull complete -# Digest: sha256:1b190dba4d1493c11677f90b683437e9c5531e2fe7105d8c46a21d8b3e521878 -# Status: Downloaded newer image for pasapipeline/pasapipeline:latest -# docker.io/pasapipeline/pasapipeline:latest - -# Below, just pasting the text and commands from Brian Haas regarding Docker -#+ installation; haven't actually tested the following: - -# Here, $base_dir corresponds to the working directory that contains your -#+ input data; replace $base_dir with your actual directory name (don't use it -#+ as a variable) -docker run --rm -it -v /tmp:/tmp -v $base_dir:$base_dir \ - pasapipeline/pasapipeline:latest \ - bash -c \ - 'cd /$base_dir \ - && /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - -c alignAssembly.conf -C -R \ - --ALIGNER gmap -g genome.fa -t transcripts.cdna.fasta' - -# And just to give you a concrete example of how I do this in my own -#+ environment (with paths specified according to my project structure), my own -#+ Docker command for running PASA on the provided sample data is: -docker run --rm -it \ - -v /tmp:/tmp \ - -v /home/bhaas/GITHUB/pasapipeline/sample_data:/home/bhaas/GITHUB/pasapipeline/sample_data \ - pasapipeline/pasapipeline:latest \ - bash -c 'cd /home/bhaas/GITHUB/pasapipeline/sample_data \ - && /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - -c sqlite.confs/alignAssembly.config -C -R \ - --ALIGNER gmap -g genome_sample.fasta -t all_transcripts.fasta.clean' -``` -
-
- -
-Successful installation of PASA with Docker - -Also, I found [this page for `PASA` on dockerhub](https://hub.docker.com/r/pasapipeline/pasapipeline); can I use `pasapipeline` like this? -```bash -#EXAMPLEFROMME -# Referencing this line from the FHCC Bioinformatics Singularity tutorial: -#+ singularity build r-base-latest.sif docker://r-base - -singularity build PASA.sif docker://pasapipeline -``` - -Let's test the above on remote: -```bash -#!/bin/bash -#DONTRUN #REMOTE - -pwd -# /home/kalavatt/singularity-docker-etc/PASA - -cd .. -singularity build PASA.sif docker://pasapipeline -# INFO: Starting build... -# WARN[0000] "/run/user/76178" directory set by $XDG_RUNTIME_DIR does not exist. Either create the directory or unset $XDG_RUNTIME_DIR.: stat /run/user/76178: no such file or directory: Trying to pull image in the event that it is a public image. -# FATAL: While performing build: conveyor failed to get: Error reading manifest latest in docker.io/library/pasapipeline: errors: -# denied: requested access to the resource is denied -# unauthorized: authentication required - -singularity build PASA.sif docker://pasapipeline/pasapipeline -# Wow, this seems to work... -``` - -
-The following was printed to screen: - -```txt -INFO: Starting build... -WARN[0000] "/run/user/76178" directory set by $XDG_RUNTIME_DIR does not exist. Either create the directory or unset $XDG_RUNTIME_DIR.: stat /run/user/76178: no such file or directory: Trying to pull image in the event that it is a public image. -WARN[0000] "/run/user/76178" directory set by $XDG_RUNTIME_DIR does not exist. Either create the directory or unset $XDG_RUNTIME_DIR.: stat /run/user/76178: no such file or directory: Trying to pull image in the event that it is a public image. -Getting image source signatures -Copying blob 16ec32c2132b done -Copying blob b7372f0e4c7e done -Copying blob 4b6435ab903e done -Copying blob bb3ed4ec7a4c done -Copying blob a43d589f1366 done -Copying blob aa307d929b17 done -Copying blob d3c331b9da8c done -Copying blob 39c12f722616 done -Copying blob a67b60493205 done -Copying blob ea4c9a29c838 done -Copying blob 95726cd7985a done -Copying config ce2f32de0d done -Writing manifest to image destination -Storing signatures -2022/11/23 12:12:10 info unpack layer: sha256:16ec32c2132b43494832a05f2b02f7a822479f8250c173d0ab27b3de78b2f058 -2022/11/23 12:12:11 info unpack layer: sha256:b7372f0e4c7ee23a71e6a0f593be74d2321d238c350a1df9c1d61aa58800fd22 -2022/11/23 12:12:15 warn rootless{usr/lib/x86_64-linux-gnu/gstreamer1.0/gstreamer-1.0/gst-ptp-helper} ignoring (usually) harmless EPERM on setxattr "security.capability" -2022/11/23 12:12:20 info unpack layer: sha256:4b6435ab903e01b7398998984b10e581dbce325ad66396a0e326e12460844caf -2022/11/23 12:12:21 warn rootless{root/.cpanm/work/1643904065.8/Test-Fork-0.02/Build.PL} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:12:21 warn rootless{root/.cpanm/work/1643904065.8/Test-Fork-0.02/Changes} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:12:21 warn rootless{root/.cpanm/work/1643904065.8/Test-Fork-0.02/MANIFEST} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:12:21 warn rootless{root/.cpanm/work/1643904065.8/Test-Fork-0.02/META.yml} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:12:21 warn rootless{root/.cpanm/work/1643904065.8/Test-Fork-0.02/lib/Test/Fork.pm} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:12:21 warn rootless{root/.cpanm/work/1643904065.8/Test-Fork-0.02/t/failed_fork.t} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:12:21 warn rootless{root/.cpanm/work/1643904065.8/Test-Fork-0.02/t/fork.t} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:12:21 warn rootless{root/.cpanm/work/1643904065.8/Test-Fork-0.02/t/fork_ok_return.t} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:12:21 info unpack layer: sha256:bb3ed4ec7a4cc746aa3c8bd891fc5870238b5599c9ff4ce4c2bbab601d1960a0 -2022/11/23 12:12:25 info unpack layer: sha256:a43d589f13668fc35a3baf6832f589cb0fe4e7518db270a596f3f02e1bcd4ac8 -2022/11/23 12:12:25 info unpack layer: sha256:aa307d929b174f503d4f2249f3fa80371c43d552839f38c5d0f7285eb6d1aed6 -2022/11/23 12:12:25 info unpack layer: sha256:d3c331b9da8c9402647ac50512335f1619a41eb24da7d14654ce2414585174f5 -2022/11/23 12:12:25 info unpack layer: sha256:39c12f722616abe4753e2cd68275053077282b85e487d8157960a8c38ced614c -2022/11/23 12:12:25 info unpack layer: sha256:a67b60493205a59c5f6e7227046c3238debb485a6b8d6ab617eba334d83d1f03 -2022/11/23 12:12:26 info unpack layer: sha256:ea4c9a29c838c7b9ca6b99d0d834d6fde97c7439fa53087fb5ed20c28087eb05 -2022/11/23 12:12:26 info unpack layer: sha256:95726cd7985a413ec09c52e32afc5c0e3eafe6a0f3580f0c8e60a4b585f816d3 -INFO: Creating SIF file... -INFO: Build complete: PASA.sif -``` -Nice! -
-
-
- -
-Successful installation of Trinity with Docker - -Let's do the same to install the latest version of `Trinity` -```bash -#!/bin/bash -#DONTRUN #REMOTE - -pwd -# /home/kalavatt/singularity-docker-etc - -singularity build Trinity.sif docker://trinityrnaseq/trinityrnaseq -``` - -
-The following was printed to screen: - -```txt -INFO: Starting build... -WARN[0000] "/run/user/76178" directory set by $XDG_RUNTIME_DIR does not exist. Either create the directory or unset $XDG_RUNTIME_DIR.: stat /run/user/76178: no such file or directory: Trying to pull image in the event that it is a public image. -WARN[0000] "/run/user/76178" directory set by $XDG_RUNTIME_DIR does not exist. Either create the directory or unset $XDG_RUNTIME_DIR.: stat /run/user/76178: no such file or directory: Trying to pull image in the event that it is a public image. -Getting image source signatures -Copying blob 7595c8c21622 done -Copying blob d13af8ca898f done -Copying blob 70799171ddba done -Copying blob b6c12202c5ef done -Copying blob f4c6ed5d0098 done -Copying blob 9cb0a3a9bc40 done -Copying blob 7baa9fcdfb01 done -Copying blob 7d6f46fec4a2 done -Copying blob 63db3c567bed done -Copying blob 3784ab1edb72 done -Copying blob 664a91eafeec done -Copying blob 9a378fda9b60 done -Copying blob 59711262c560 done -Copying blob 2fe84828826b done -Copying blob eb9b9daf9f62 done -Copying blob 8b8d9fb71d0a done -Copying blob 8f74c665b97f done -Copying blob 61be161bf30c done -Copying blob 5d04e4c0856c done -Copying blob 2b950511e31f done -Copying blob fb69d4b3806b done -Copying blob 1b412f3cc2a6 done -Copying blob 00d027a30155 done -Copying blob fbeb299350dc done -Copying blob 6b1dde3f4b10 done -Copying blob 14226d8bc60c done -Copying blob 3d3aa11b2963 done -Copying blob 3b2301cc97c3 done -Copying blob 0296120c2e81 done -Copying blob 2bc0b6caa553 done -Copying blob a7a7f0efc2ea done -Copying blob dd538631897b done -Copying blob 59396c340339 done -Copying blob 326a5fbf677c done -Copying blob 680af78e44da done -Copying blob db6f15ce2a38 done -Copying blob afd7b50e562c done -Copying blob e8528e82a8ac done -Copying blob 00b65cf9ea53 done -Copying blob e89b22784614 done -Copying blob eff801715fb5 done -Copying blob cadd82527c77 done -Copying blob e07d95e692e7 done -Copying blob 6732fbd5b491 done -Copying blob d4a3e63359f7 done -Copying blob 92a754a673d1 done -Copying blob 4d4d7f736c14 done -Copying blob 7a5099acf88f done -Copying blob 60cb67e04386 done -Copying blob ae240b68c5df done -Copying blob 4ccb2730c7ea done -Copying blob edd1035dba16 done -Copying blob ae1fe7a9f49f done -Copying config 27124e93cc done -Writing manifest to image destination -Storing signatures -2022/11/23 12:21:29 info unpack layer: sha256:7595c8c21622ea8a8b9778972e26dbbe063f7a1c4b0a28a80a34ebb3d343b586 -2022/11/23 12:21:30 info unpack layer: sha256:d13af8ca898f36af68711cb67c345f65046a78ccd802453f4b129adf9205b1f8 -2022/11/23 12:21:30 info unpack layer: sha256:70799171ddba93a611490ba3557d782714b3f4da8963d49ac8726786ba8274a5 -2022/11/23 12:21:30 info unpack layer: sha256:b6c12202c5ef07dc9eb8f9d9e71407064684ed70f8c4040b62679b7d30200840 -2022/11/23 12:21:30 info unpack layer: sha256:f4c6ed5d0098d3932a973210d66408f367a04a6bc2916a6c379e62112f818392 -2022/11/23 12:21:49 info unpack layer: sha256:9cb0a3a9bc40f9933d1e613c78bec11ab98ca8c5fae29bce816d425e9ef3d5fe -2022/11/23 12:21:49 info unpack layer: sha256:7baa9fcdfb01d850e10993c4fb4c84d5f945e7ff3d53c07a461ff545b48e5f5d -2022/11/23 12:21:49 info unpack layer: sha256:7d6f46fec4a2223ac6733a95823af482265ddc825cfd018b53bd652a93b60c86 -2022/11/23 12:21:49 info unpack layer: sha256:63db3c567bed6c69b58dbe27a13ff8bdc81a18f390b2eb1941a10b01adf5e292 -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/KernSmooth.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/MASS.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/Matrix.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/boot.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/class.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/cluster.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/codetools.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/foreign.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/lattice.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/mgcv.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/nlme.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/nnet.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/rpart.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/spatial.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:52 warn rootless{usr/local/src/R-3.6.3/src/library/Recommended/survival.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:54 warn rootless{usr/local/src/R-3.6.3/tests/Pkgs/pkgA} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/11/23 12:21:54 info unpack layer: sha256:3784ab1edb726131da34954257089e864dd84a865b4967a5a57bfed323167a98 -2022/11/23 12:21:54 info unpack layer: sha256:664a91eafeec75e33121852cabf162a27448a0d29e4a16b0c076442584ea226c -2022/11/23 12:21:58 info unpack layer: sha256:9a378fda9b60decad911d6959e0dd1ef6c774e5bd66234533bf17103a357e70d -2022/11/23 12:21:58 info unpack layer: sha256:59711262c560c2a49ebd07abb56ecaed92f3f722db39d307fae501579ba35175 -2022/11/23 12:22:00 info unpack layer: sha256:2fe84828826bf9abcafd6f22e78004bb730000fd596b879cbe872ecf3884c2ec -2022/11/23 12:22:00 info unpack layer: sha256:eb9b9daf9f624401cf16fb891e0dca7c2f7a7d45d7816b7f475f84df1eb76261 -2022/11/23 12:22:00 info unpack layer: sha256:8b8d9fb71d0a462deb7e6c433f50b60df01c382662ddbab262ca8ea03210bbf4 -2022/11/23 12:22:00 info unpack layer: sha256:8f74c665b97f947ceddfc8d8da574fcc0a317895ab4bbe474fd03da879bc5047 -2022/11/23 12:22:00 info unpack layer: sha256:61be161bf30c829eeea071daed9174a071d433185b65b9736174eeef8406afd3 -2022/11/23 12:22:00 info unpack layer: sha256:5d04e4c0856cb2803ac512294e748cf31c46a016674c377e9a61deb275e00cef -2022/11/23 12:22:03 info unpack layer: sha256:2b950511e31f9ac307000c0d4f98d4a625c836a91dd80e050f98838acf355aea -2022/11/23 12:22:03 info unpack layer: sha256:fb69d4b3806bc01ab6a38d08027b6a41ef23709f44f37daaebcde25d5cb6e10e -2022/11/23 12:22:03 info unpack layer: sha256:1b412f3cc2a64f62e7c0cdaf2f37422c980c6e05eeffc0ab8e113cb57997c610 -2022/11/23 12:22:03 info unpack layer: sha256:00d027a30155c6b9a89cfc5bd0caa7215fcb1a9a8aca393ba4b966c0cff7431c -2022/11/23 12:22:03 info unpack layer: sha256:fbeb299350dc0903aae4e48763e9704177687d21a9a903a18c116d4d1209da52 -2022/11/23 12:22:03 info unpack layer: sha256:6b1dde3f4b108c906c939fc88b7b7a252cd360b9fff6b5dd6c44ace1e743699b -2022/11/23 12:22:03 info unpack layer: sha256:14226d8bc60ccbd8eccbe03de9b9e5897204b72d42fe9b4a7f7498e30f6a7ad2 -2022/11/23 12:22:03 info unpack layer: sha256:3d3aa11b29638e279fcd301d2297f25ab72dac7c7b5a9f63c3e80220775aabc8 -2022/11/23 12:22:07 info unpack layer: sha256:3b2301cc97c3edfbebbbccc01652902e586d19eee9000e72934cd762766e5f39 -2022/11/23 12:22:07 info unpack layer: sha256:0296120c2e81e492da10dbbb0b7ce1fa940615f7d6c24ef37b4fda29e596dcf6 -2022/11/23 12:22:07 info unpack layer: sha256:2bc0b6caa553e8733d199a3bc7ac43964d34f7b5df21c057da5fe1085b952cc2 -2022/11/23 12:22:07 info unpack layer: sha256:a7a7f0efc2ea63694b3416783bdb864534b6435415e3d783755dee1b45be6b7a -2022/11/23 12:22:09 info unpack layer: sha256:dd538631897ba38d902137463f30780fdd4905e7a81ac411b8d8a9e805726270 -2022/11/23 12:22:09 info unpack layer: sha256:59396c340339614cb39962074d3aef069f84f241f3be86db3b6d9c4649452655 -2022/11/23 12:22:11 info unpack layer: sha256:326a5fbf677c9008863d5fc4be815631dfe37312b4ccd8d773b3a0e30e0beec4 -2022/11/23 12:22:11 info unpack layer: sha256:680af78e44da976173aff4b7516e2d362e76d5b62271de9f0e0145758b164df3 -2022/11/23 12:22:11 info unpack layer: sha256:db6f15ce2a3806452b698fc537092af83058c4a52bd21c7a989f1b73f22b69b7 -2022/11/23 12:22:12 info unpack layer: sha256:afd7b50e562c22fd41d55a337e60f965493aa884e3e50e78bc756755412378d1 -2022/11/23 12:22:12 info unpack layer: sha256:e8528e82a8ac10dee2bd3853846e979e5c9d387437aaa020b03497f82a5d6fc2 -2022/11/23 12:22:21 info unpack layer: sha256:00b65cf9ea53ec464002334bcab47cd1ee819d613525959bf5a3a350b5a89181 -2022/11/23 12:22:23 info unpack layer: sha256:e89b227846144f52c392ff4aef91c7dd21d8486b9de24a5079221444e38917a7 -2022/11/23 12:22:24 info unpack layer: sha256:eff801715fb533409a906810eeb3305cb33a00b19ed05317353987b7d1812b81 -2022/11/23 12:22:25 info unpack layer: sha256:cadd82527c772403be78dc39d019c21723b91cd4e3de063569f1fe98616b3535 -2022/11/23 12:22:26 info unpack layer: sha256:e07d95e692e7097ea93a8709fbf7eaa26e7958cd3b64c5a4dd0321f224a35d27 -2022/11/23 12:22:29 info unpack layer: sha256:6732fbd5b491b835c7960550cc6f5e8ff7f2fb666749f5581e095e679abe7909 -2022/11/23 12:22:33 info unpack layer: sha256:d4a3e63359f7017c9d946bdb9c146b609d2dcb4b5c9ac842d8750ccecc81f599 -2022/11/23 12:22:33 info unpack layer: sha256:92a754a673d171329ca5436d96b497ff33818f2562ffa4de8d08431a462dae58 -2022/11/23 12:22:33 info unpack layer: sha256:4d4d7f736c14c4fcf99578ccc5fc826fdd985a028db2df445999b5579fd8212d -2022/11/23 12:22:41 info unpack layer: sha256:7a5099acf88f131a9867c3942024ef388aae98fed54720974a280be2869d001d -2022/11/23 12:22:41 info unpack layer: sha256:60cb67e043863d56fd05e681ded707b40873728e41ea3cbc416ae92c50996dfe -2022/11/23 12:22:43 info unpack layer: sha256:ae240b68c5dff1dd383cbe8943905592709b676e4e28fba9ef772269b80d3665 -2022/11/23 12:22:46 info unpack layer: sha256:4ccb2730c7ea530893c4bd9076217b7bb3554e5b374cdd1e9ecf6ef659c8abe3 -2022/11/23 12:22:46 info unpack layer: sha256:edd1035dba16da6ac7979c5753e934c7c7de508fa14b6ee73667d31066af3cd4 -2022/11/23 12:22:46 info unpack layer: sha256:ae1fe7a9f49feb17c39ae199bd7d7bfe20138df9d49dce9dedaab80cfb3ee721 -INFO: Creating SIF file... -INFO: Build complete: Trinity.sif -``` -Nice! -
-
-
- - -### More details and instructions for using PASA with Docker - - -#### Example with test data -...taken from [this GitHub Wiki page](https://github.com/PASApipeline/PASApipeline/wiki/PASA_Docker#example-with-test-data) - -If you are going to try out the `docker run` command as `@brianjohnhaas` suggests, do so this way: - -1. Let's say you are in a directory called `/home/github_pasa` -2. `git clone https://github.com/PASApipeline/PASApipeline.git` -3. You will now see `PASApipeline/` under `/home/github_pasa/` -4. Before the `docker run ...` do as follows -```bash -mkdir -p /home/work/temp -cd /home/work/ -cp -r /home/github_pasa/PASApipeline/sample_data . -gunzip /home/work/sample_data/genome_sample.fasta.gz -``` -5. Please do note that running the `docker run ...` command will add new files/folders to the `sample_data` directory at `/home/work/` -6. Run the `docker run ...` command from `/home/work`, where `` could either be a `docker pull pasapipeline/pasapipeline:latest` or a custom `docker` built using the `Dockerfile` at the https://github.com/PASApipeline/PASApipeline/tree/master/Docker - - -#### PASA/Docker Execution Modes (SQLite or MySQL) -...taken from [this GitHub Wiki page](https://github.com/PASApipeline/PASApipeline/wiki/PASA_Docker#pasadocker-execution-modes-sqlite-or-mysql) - - -##### Docker using SQLite -If you want to run `PASA` (align step) with `SQLITE` then do this: -```bash -docker run --rm -it \ - -v $PWD/temp:/tmp \ - -v $PWD/sample_data:/home/bhaas/GITHUB/pasapipeline/sample_data \ - pasapipeline/pasapipeline:latest \ - bash -c ' \ - cd /home/bhaas/GITHUB/pasapipeline/sample_data \ - && /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - -c mysql.confs/alignAssembly.config -C -R \ - --ALIGNER gmap -g genome_sample.fasta -t all_transcripts.fasta.clean' -``` - - -##### MySQL internally within Docker -```bash -docker run --rm -it \ - -v $PWD/temp:/tmp \ - -v $PWD/sample_data:/home/bhaas/GITHUB/pasapipeline/sample_data \ - pasapipeline/pasapipeline:latest \ - bash -c ' \ - cd /home/bhaas/GITHUB/pasapipeline/sample_data \ - && /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - -c mysql.confs/alignAssembly.config -C -R \ - --ALIGNER gmap -g genome_sample.fasta -t all_transcripts.fasta.clean' -``` - - -##### Local MySQL outside Docker Container -```bash -docker run --rm -it \ - -v $PWD/temp:/tmp \ - -v $PWD/sample_data:/home/bhaas/GITHUB/pasapipeline/sample_data \ - pasapipeline/pasapipeline:latest \ - bash -c ' \ - service mysql start \ - && cd /home/bhaas/GITHUB/pasapipeline/sample_data \ - && /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - -c mysql.confs/alignAssembly.config -C -R \ - --ALIGNER gmap -g genome_sample.fasta -t all_transcripts.fasta.clean' -``` - - -## On handling file access with `Singularity` -- [Binding file in singularity](https://stackoverflow.com/questions/45755512/binding-file-in-singularity) -- [Nice breakdowns of running Singularity on cluster from Harvard FAS](https://docs.rc.fas.harvard.edu/kb/singularity-on-the-cluster/) -- See the [FHCC Bioinformatics' Singularity Access to Storage section](#access-to-storage) -- [Sylabs documentation on "Bind Paths and Mounts"](https://docs.sylabs.io/guides/3.0/user-guide/bind_paths_and_mounts.html) - + This seems to have the answer ~~`#DONE` Study and test this~~ -- [Google search results "singularity mount directory"](https://www.google.com/search?q=singularity+mount+directory&oq=mount+directory+singu&aqs=chrome.1.69i57j0i22i30.5454j0j7&sourceid=chrome&ie=UTF-8) - - -### Testing system-defined bind paths in `Singularity` -
-Checking the engine, kicking the tires... - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Default and lowest settings - -ml Singularity/3.5.3 - -cd ~/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101 \ - || echo "cd'ing failed; check on this" - -cd ~ -ls -lhaFG singularity-docker-etc - -# Activate shell within/coming from the container -singularity shell ~/singularity-docker-etc/PASA.sif - -ls -lhaFG -# Singularity> ls -lhaFG -# total 1.5M -# drwxr-x--- 18 kalavatt 805 Nov 24 12:48 ./ -# drwxr-xr-x 1 kalavatt 60 Nov 24 12:50 ../ -# -rw------- 1 kalavatt 50 Nov 17 15:27 .Xauthority -# -rw-rw---- 1 kalavatt 4.0K Nov 21 12:33 .bash_aliases -# -rw-rw---- 1 kalavatt 3.2K Nov 20 13:21 .bash_functions -# -rw------- 1 kalavatt 570K Nov 24 12:50 .bash_history -# -rw-rw---- 1 kalavatt 308 Oct 20 11:18 .bash_profile -# -rw-rw---- 1 kalavatt 6.0K Nov 7 15:05 .bashrc -# drwx------ 4 kalavatt 87 Oct 20 11:42 .cache/ -# drwxr-x--- 2 kalavatt 34 Oct 20 10:28 .conda/ -# drwxrwx--- 5 kalavatt 75 Oct 28 15:14 .config/ -# -rw-rw---- 1 kalavatt 88 Oct 21 14:04 .gitconfig -# drwx------ 3 kalavatt 35 Oct 17 10:57 .gnupg/ -# drwxrwx--- 3 kalavatt 23 Nov 7 15:06 .java/ -# drwx------ 7 kalavatt 113 Nov 1 09:09 .local/ -# drwxr-x--- 15 kalavatt 524 Oct 20 09:57 .oh-my-bash/ -# drwxrwx--- 2 kalavatt 44 Nov 1 12:54 .oracle_jre_usage/ -# -rw-r----- 1 kalavatt 17 Nov 17 08:49 .osh-update -# -rw-r----- 1 kalavatt 0 Nov 24 12:25 .sdirs -# drwx------ 3 kalavatt 52 Nov 23 08:33 .singularity/ -# drwx------ 2 kalavatt 62 Oct 20 13:03 .ssh/ -# -rw------- 1 kalavatt 28K Nov 23 11:51 .viminfo -# -rw-rw---- 1 kalavatt 215 Oct 20 10:33 .wget-hsts -# drwxrwx--- 3 kalavatt 23 Oct 20 11:42 Downloads/ -# drwxrwx--- 9 kalavatt 6.4K Oct 5 17:22 bbmap/ -# drwxrwx--- 10 kalavatt 335 Nov 7 13:14 genomes/ -# drwxr-x--- 20 kalavatt 570 Nov 23 11:34 miniconda3/ -# -rw-rw---- 1 kalavatt 726 Nov 1 09:20 picardmetrics.conf -# drwxrwx--- 3 kalavatt 227 Nov 23 12:35 singularity-docker-etc/ -# drwxrwx--- 6 kalavatt 148 Nov 1 09:09 src/ -# lrwxrwxrwx 1 root 37 Oct 17 10:44 tsukiyamalab -> /fh/fast/tsukiyama_t/grp/tsukiyamalab - -ls -lhaFG / -# total 152K -# drwxr-xr-x 1 kalavatt 60 Nov 24 12:50 ./ -# drwxr-xr-x 1 kalavatt 60 Nov 24 12:50 ../ -# lrwxrwxrwx 1 root 27 Nov 23 12:12 .exec -> .singularity.d/actions/exec* -# lrwxrwxrwx 1 root 26 Nov 23 12:12 .run -> .singularity.d/actions/run* -# lrwxrwxrwx 1 root 28 Nov 23 12:12 .shell -> .singularity.d/actions/shell* -# drwxr-xr-x 5 root 127 Nov 23 12:12 .singularity.d/ -# lrwxrwxrwx 1 root 27 Nov 23 12:12 .test -> .singularity.d/actions/test* -# lrwxrwxrwx 1 root 7 Jul 23 2021 bin -> usr/bin/ -# drwxr-xr-x 2 root 3 Apr 15 2020 boot/ -# drwxr-xr-x 18 root 4.1K Nov 23 16:19 dev/ -# lrwxrwxrwx 1 root 36 Nov 23 12:12 environment -> .singularity.d/env/90-environment.sh* -# drwxr-xr-x 53 root 1.8K Aug 6 2021 etc/ -# drwxr-xr-x 1 kalavatt 60 Nov 24 12:50 home/ -# lrwxrwxrwx 1 root 7 Jul 23 2021 lib -> usr/lib/ -# lrwxrwxrwx 1 root 9 Jul 23 2021 lib32 -> usr/lib32/ -# lrwxrwxrwx 1 root 9 Jul 23 2021 lib64 -> usr/lib64/ -# lrwxrwxrwx 1 root 10 Jul 23 2021 libx32 -> usr/libx32/ -# drwxr-xr-x 2 root 3 Jul 23 2021 media/ -# drwxr-xr-x 2 root 3 Jul 23 2021 mnt/ -# drwxr-xr-x 2 root 3 Jul 23 2021 opt/ -# dr-xr-xr-x 494 root 0 Nov 9 06:59 proc/ -# drwx------ 3 root 90 Feb 3 2022 root/ -# drwxr-xr-x 8 root 124 Aug 6 2021 run/ -# lrwxrwxrwx 1 root 8 Jul 23 2021 sbin -> usr/sbin/ -# lrwxrwxrwx 1 root 24 Nov 23 12:12 singularity -> .singularity.d/runscript* -# drwxr-xr-x 2 root 3 Jul 23 2021 srv/ -# dr-xr-xr-x 13 root 0 Nov 9 06:59 sys/ -# drwxrwxrwt 18 root 148K Nov 24 12:52 tmp/ -# drwxr-xr-x 14 root 241 Aug 6 2021 usr/ -# drwxr-xr-x 11 root 172 Jul 23 2021 var/ - -alias .,="ls -lhaFG" - -., /bin -# lrwxrwxrwx 1 root 7 Jul 23 2021 /bin -> usr/bin/ - -cd /bin && ., -# ... (a lot) - -cd .. -., /dev -# ... (a lot) - -., /etc -# ... (a lot) - -., /lib -# lrwxrwxrwx 1 root 7 Jul 23 2021 /lib -> usr/lib/ - -., /mnt -# total 0 -# drwxr-xr-x 2 root 3 Jul 23 2021 ./ -# drwxr-xr-x 1 kalavatt 60 Nov 24 12:50 ../ - -., /opt -# total 0 -# drwxr-xr-x 2 root 3 Jul 23 2021 ./ -# drwxr-xr-x 1 kalavatt 60 Nov 24 12:50 ../ - -., /proc -# ... (a lot) - -., /root -# ls: cannot open directory '/root': Permission denied - -., /run -# total 512 -# drwxr-xr-x 8 root 124 Aug 6 2021 ./ -# drwxr-xr-x 1 kalavatt 60 Nov 24 12:50 ../ -# drwxrwxrwt 3 root 29 Aug 6 2021 lock/ -# drwxr-xr-x 2 root 3 Aug 6 2021 log/ -# drwxr-xr-x 2 root 3 Jul 23 2021 mount/ -# drwxr-xr-x 2 root 3 Aug 6 2021 sendsigs.omit.d/ -# lrwxrwxrwx 1 root 8 Aug 6 2021 shm -> /dev/shm/ -# drwxr-xr-x 10 root 154 Aug 6 2021 systemd/ -# drwxr-xr-x 2 root 3 Aug 6 2021 user/ -# -rw-rw-r-- 1 root 0 Jul 23 2021 utmp - -., /srv -# drwxr-xr-x 2 root 3 Jul 23 2021 ./ -# drwxr-xr-x 1 kalavatt 60 Nov 24 12:50 ../ - -., /sys -total 0 -# dr-xr-xr-x 13 root 0 Nov 24 12:53 ./ -# drwxr-xr-x 1 kalavatt 60 Nov 24 12:50 ../ -# drwxr-xr-x 2 root 0 Nov 9 06:59 block/ -# drwxr-xr-x 45 root 0 Nov 9 06:59 bus/ -# drwxr-xr-x 66 root 0 Nov 9 06:59 class/ -# drwxr-xr-x 4 root 0 Nov 9 06:59 dev/ -# drwxr-xr-x 71 root 0 Nov 9 06:59 devices/ -# drwxr-xr-x 5 root 0 Nov 9 06:59 firmware/ -# drwxr-xr-x 9 root 0 Nov 9 06:59 fs/ -# drwxr-xr-x 2 root 0 Nov 9 06:59 hypervisor/ -# drwxr-xr-x 14 root 0 Nov 9 06:59 kernel/ -# drwxr-xr-x 180 root 0 Nov 9 06:59 module/ -# drwxr-xr-x 2 root 0 Nov 9 06:59 power/ - -., /tmp -# total 216K -# drwxrwxrwt 18 root 148K Nov 24 13:00 ./ -# drwxr-xr-x 1 kalavatt 60 Nov 24 12:50 ../ -# drwxrwxrwt 2 root 4.0K Nov 9 07:00 .ICE-unix/ -# drwxrwxrwt 2 root 4.0K Nov 9 07:00 .Test-unix/ -# drwxrwxrwt 2 root 4.0K Nov 9 07:00 .X11-unix/ -# drwxrwxrwt 2 root 4.0K Nov 9 07:00 .XIM-unix/ -# drwxrwxrwt 2 root 4.0K Nov 9 07:00 .font-unix/ -# drwx------ 2 73778 4.0K Nov 23 17:33 Rtmp2N7h2a/ -# drwxr-xr-x 3 74026 4.0K Nov 9 14:15 build/ -# drwxr-x--- 2 42037 4.0K Nov 23 00:06 hsperfdata_apaguiri/ -# drwxr-x--- 2 72966 4.0K Nov 21 00:08 hsperfdata_azimmer/ -# drwxr-x--- 2 71540 4.0K Nov 17 19:31 hsperfdata_madil/ -# drwxr-x--- 2 61501 4.0K Nov 18 16:55 hsperfdata_nahmed/ -# drwxrwxrw- 2 71540 4.0K Nov 17 19:31 madil/ -# drwx------ 3 root 4.0K Nov 11 00:25 systemd-private-318ce31389ba4b1dbadc92a7cc2f39f6-ntp.service-VEcyVu/ -# drwx------ 3 root 4.0K Nov 9 07:00 systemd-private-318ce31389ba4b1dbadc92a7cc2f39f6-systemd-resolved.service-JgDtTj/ -# drwxrwxrwt 2 60495 4.0K Nov 17 17:35 tmp/ -# drwxrwxrwt 2 60495 4.0K Nov 16 16:59 var_tmp/ - -., /usr -# total 0 -# drwxr-xr-x 14 root 241 Aug 6 2021 ./ -# drwxr-xr-x 1 kalavatt 60 Nov 24 12:50 ../ -# drwxr-xr-x 2 root 11K Aug 6 2021 bin/ -# drwxr-xr-x 2 root 3 Apr 15 2020 games/ -# drwxr-xr-x 42 root 2.9K Aug 6 2021 include/ -# drwxr-xr-x 39 root 759 Aug 6 2021 lib/ -# drwxr-xr-x 3 root 2.0K Aug 6 2021 lib32/ -# drwxr-xr-x 2 root 43 Jul 23 2021 lib64/ -# drwxr-xr-x 2 root 58 Aug 6 2021 libexec/ -# drwxr-xr-x 3 root 2.1K Aug 6 2021 libx32/ -# drwxr-xr-x 10 root 135 Jul 23 2021 local/ -# drwxr-xr-x 2 root 2.3K Aug 6 2021 sbin/ -# drwxr-xr-x 66 root 1.2K Aug 6 2021 share/ -# drwxr-xr-x 2 root 3 Apr 15 2020 src/ - -., /var -# total 5.0K -# drwxr-xr-x 11 root 172 Jul 23 2021 ./ -# drwxr-xr-x 1 kalavatt 60 Nov 24 12:50 ../ -# drwxr-xr-x 2 root 3 Apr 15 2020 backups/ -# drwxr-xr-x 7 root 102 Aug 6 2021 cache/ -# drwxr-xr-x 18 root 271 Aug 6 2021 lib/ -# drwxrwsr-x 2 root 3 Apr 15 2020 local/ -# lrwxrwxrwx 1 root 9 Jul 23 2021 lock -> /run/lock/ -# drwxr-xr-x 6 root 184 Aug 6 2021 log/ -# drwxrwsr-x 2 root 3 Jul 23 2021 mail/ -# drwxr-xr-x 2 root 3 Jul 23 2021 opt/ -# lrwxrwxrwx 1 root 4 Jul 23 2021 run -> /run/ -# drwxr-xr-x 2 root 27 Jul 23 2021 spool/ -# drwxrwxrwt 6 root 4.0K Nov 24 12:48 tmp/ - -# This isn't the same as my /, right? Exit Singularity shell and check -exit -ls -lhaFG / -# total 312K -# drwxr-xr-x 30 root 4.0K Sep 10 13:51 ./ -# drwxr-xr-x 30 root 4.0K Sep 10 13:51 ../ -# drwxrwsr-x 15 root 312 May 10 2022 app/ -# -rw-r--r-- 1 root 0 Jul 9 2020 .autorelabel -# drwxr-xr-x 2 root 4.0K Nov 11 00:25 bin/ -# drwxr-xr-x 3 root 4.0K Nov 11 00:26 boot/ -# drwxr-xr-x 3 root 4.0K Feb 11 2022 .bundle/ -# drwxr-xr-x 18 root 4.1K Nov 23 16:19 dev/ -# drwxr-xr-x 114 root 12K Nov 24 12:48 etc/ -# dr-xr-xr-x 7 root 4.0K May 10 2021 fh/ -# drwx------ 2 root 4.0K Jul 9 2020 .gnupg/ -# dr-xr-xr-x 2 root 4.0K Nov 2 2020 goodtimes_NFS/ -# drwxr-xr-x 7 root 0 Nov 24 12:58 home/ -# lrwxrwxrwx 1 root 34 Sep 10 13:51 initrd.img -> boot/initrd.img-4.15.0-192-generic -# lrwxrwxrwx 1 root 34 Sep 10 13:51 initrd.img.old -> boot/initrd.img-4.15.0-101-generic -# dr-xr-xr-x 2 root 4.0K May 10 2021 install/ -# drwxr-xr-x 20 root 4.0K Sep 10 13:41 lib/ -# drwxr-xr-x 2 root 4.0K Sep 10 13:41 lib64/ -# drwxr-xr-x 4 root 4.0K Jul 9 2020 loc/ -# drwx------ 2 root 16K Jul 9 2020 lost+found/ -# drwxr-xr-x 2 root 4.0K Jul 9 2020 media/ -# drwxr-xr-x 9 root 4.0K Mar 20 2022 mnt/ -# drwxr-xr-x 7 root 4.0K Mar 4 2021 opt/ -# dr-xr-xr-x 508 root 0 Nov 9 06:59 proc/ -# drwx------ 7 root 4.0K Oct 24 14:56 root/ -# drwxr-xr-x 30 root 1.4K Nov 24 13:02 run/ -# drwxr-xr-x 2 root 12K Nov 11 00:25 sbin/ -# dr-xr-xr-x 17 root 4.0K Sep 10 08:22 shared/ -# drwxr-xr-x 2 root 4.0K Jul 9 2020 srv/ -# dr-xr-xr-x 13 root 0 Nov 24 12:53 sys/ -# drwxrwxrwt 18 root 148K Nov 24 13:02 tmp/ -# drwxr-xr-x 10 root 4.0K Jul 9 2020 usr/ -# drwxr-xr-x 15 root 4.0K Jul 9 2020 var/ -# lrwxrwxrwx 1 root 31 Sep 10 13:51 vmlinuz -> boot/vmlinuz-4.15.0-192-generic -# lrwxrwxrwx 1 root 31 Sep 10 13:51 vmlinuz.old -> boot/vmlinuz-4.15.0-101-generic - -cd /mnt && ls -lhaFG -# total 29K -# drwxr-xr-x 9 root 4.0K Mar 20 2022 ./ -# drwxr-xr-x 30 root 4.0K Sep 10 13:51 ../ -# drwxr-xr-x 2 root 4.0K Feb 7 2022 app/ -# drwxr-xr-x 2 root 0 Nov 9 07:00 campbell-data/ -# dr-xr-xr-x 3 root 4.0K Nov 2 2020 scdata/ -# dr-xr-xr-x 2 root 4.0K Nov 20 06:41 silver/ -# dr-xr-xr-x 2 root 4.0K May 10 2021 stortest/ -# drwxr-xr-x 2 root 4.0K Mar 20 2022 test-1/ -# drwxrwxrwx 3 root 1 Oct 2 2021 thorium/ - -# It's different based on my /, I think; the image maps its directories some -#+ of the directories in /, I think -``` -
-
- -The `*.sif` containers maps many of its directories to directories in my local `/`, I think... - - -### Try mounting some datasets needed for running `PASA` (`Singularity`) -```bash -#!/bin/bash -#DONTRUN - -grabnode # Default and lowest settings - -ml Singularity/3.5.3 - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" \ - || echo "cd'ing failed; check on this" - -mkdir -p exp_PASA_trial - -cd exp_PASA_trial - -ln -s \ - "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_Trinity_trial/exp_Trinity_trial_genome-free_SC_all/Trinity_trial_genome-free_SC_all.Trinity.fasta" \ - genome-free_SC_all.Trinity.fasta - -ln -s \ - "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_Trinity_trial/exp_Trinity_trial_genome-guided_SC_all/Trinity_trial_genome-guided_SC_all/Trinity-GG.fasta" \ - genome-guided_SC_all.Trinity.fasta - -ls -lhaFG -# total 99K -# drwxrws--- 2 kalavatt 102 Nov 24 13:26 ./ -# drwxrws--- 14 kalavatt 1.2K Nov 24 13:15 ../ -# lrwxrwxrwx 1 kalavatt 188 Nov 24 13:23 genome-free_SC_all.Trinity.fasta -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_Trinity_trial/exp_Trinity_trial_genome-free_SC_all/Trinity_trial_genome-free_SC_all.Trinity.fasta -# lrwxrwxrwx 1 kalavatt 195 Nov 24 13:26 genome-guided_SC_all.Trinity.fasta -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_Trinity_trial/exp_Trinity_trial_genome-guided_SC_all/Trinity_trial_genome-guided_SC_all/Trinity-GG.fasta - -# Check the symbolic links -head genome-free_SC_all.Trinity.fasta # It works -head genome-guided_SC_all.Trinity.fasta # It works - -# Anything assigned to this environmental variable for Singularity? -echo "${SINGULARITY_BIND}" # Empty - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial - -export SINGULARITY_BIND=/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial:/mnt/data -echo "${SINGULARITY_BIND}" -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial - -# Now try activating the singularity shell -singularity shell ~/singularity-docker-etc/PASA.sif -# WARNING: Bind mount '/home/kalavatt => /home/kalavatt' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial, may not be available - -ls -lhaFG /mnt/data -# total 67K -# drwxrws--- 2 kalavatt 102 Nov 24 13:26 ./ -# drwxr-xr-x 1 kalavatt 60 Nov 24 13:31 ../ -# lrwxrwxrwx 1 kalavatt 188 Nov 24 13:23 genome-free_SC_all.Trinity.fasta -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_Trinity_trial/exp_Trinity_trial_genome-free_SC_all/Trinity_trial_genome-free_SC_all.Trinity.fasta -# lrwxrwxrwx 1 kalavatt 195 Nov 24 13:26 genome-guided_SC_all.Trinity.fasta -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_Trinity_trial/exp_Trinity_trial_genome-guided_SC_all/Trinity_trial_genome-guided_SC_all/Trinity-GG.fasta - -# It seems to have worked -``` -
-
- - -## Try a trial run of `Singularity` `PASA` - -### Working through the first few steps of `PASA` Wiki (2022-1124) -We have successfully mounted data for use with `Singularity` `PASA`; let's try running `Singularity` `PASA` following the comprehensive-transcriptome-database approach described [here](https://github.com/PASApipeline/PASApipeline/wiki/PASA_comprehensive_db). - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Default and lowest settings - -ml Singularity/3.5.3 - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial" \ - || echo "cd'ing failed; check on this" - -ls -1 -# genome-free_SC_all.Trinity.fasta -# genome-guided_SC_all.Trinity.fasta - -# 1. Concatenate the Trinity.fasta and Trinity.GG.fasta files into a single -#+ transcripts.fasta file -cat genome-free_SC_all.Trinity.fasta genome-guided_SC_all.Trinity.fasta > transcripts.fasta - -# 2. Create a file containing the list of transcript accessions that -#+ correspond to the Trinity de novo assembly (full de novo, not genome- -#+ guided) -export SINGULARITY_BIND=/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial:/mnt/data -echo "${SINGULARITY_BIND}" - -# See this link to learn more about singularity run: -#+ docs.sylabs.io/guides/3.1/user-guide/cli/singularity_run.html -if [[ -f tdn.accs ]]; then rm tdn.accs; fi -singularity run ~/singularity-docker-etc/PASA.sif \ - ${PASA_HOME}/misc_utilities/accession_extractor.pl \ - < genome-free_SC_all.Trinity.fasta \ - > tdn.accs -# WARNING: Bind mount '/home/kalavatt => /home/kalavatt' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial, may not be available -# /.singularity.d/runscript: 39: exec: /misc_utilities/accession_extractor.pl: not found - -# ${PASA_HOME} is /usr/local/src/PASApipeline, so try that out... -if [[ -f tdn.accs ]]; then rm tdn.accs; fi -singularity run ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl \ - < genome-free_SC_all.Trinity.fasta \ - > tdn.accs -# WARNING: Bind mount '/home/kalavatt => /home/kalavatt' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial, may not be available -# perl: warning: Setting locale failed. -# perl: warning: Please check that your locale settings: -# LANGUAGE = "en_US:", -# LC_ALL = (unset), -# LC_CTYPE = "en_US.UTF-8", -# LANG = "en_US.UTF-8" -# are supported and installed on your system. -# perl: warning: Falling back to the standard locale ("C"). - -# It works! - - -# 3. Run PASA using RNA-seq-related options as described in the section above, -#+ but include the parameter setting --TDN tdn.accs -export PASAHOME=/usr/local/src/PASApipeline -echo "${PASAHOME}" - -# First, need to do things described in these two links: -#+ - github.com/PASApipeline/PASApipeline/wiki/PASA_alignment_assembly -#+ - github.com/PASApipeline/PASApipeline/wiki/PASA_RNAseq - -# 3a. Clean the transcript sequences (PASA_alignment_assembly) -cp transcripts.fasta bak.transcripts.fasta - -singularity run ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean transcripts.fasta -# WARNING: Bind mount '/home/kalavatt => /home/kalavatt' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial, may not be available -# perl: warning: Setting locale failed. -# perl: warning: Please check that your locale settings: -# LANGUAGE = "en_US:", -# LC_ALL = (unset), -# LC_CTYPE = "en_US.UTF-8", -# LANG = "en_US.UTF-8" -# are supported and installed on your system. -# perl: warning: Falling back to the standard locale ("C"). -# seqclean running options: -# seqclean transcripts.fasta -# Standard log file: seqcl_transcripts.fasta.log -# Error log file: err_seqcl_transcripts.fasta.log -# Using 1 CPUs for cleaning -# -= Rebuilding transcripts.fasta cdb index =- -# Launching actual cleaning process: -# psx -p 1 -n 1000 -i transcripts.fasta -d cleaning -C '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial/transcripts.fasta:ANLMS100:::11:0' -c '/usr/local/src/PASApipeline/bin/seqclean.psx' -# Collecting cleaning reports -# -# ************************************************** -# Sequences analyzed: 19435 -# ----------------------------------- -# valid: 19435 (5441 trimmed) -# trashed: 0 -# ************************************************** -# Output file containing only valid and trimmed sequences: transcripts.fasta.clean -# For trimming and trashing details see cleaning report : transcripts.fasta.cln -# -------------------------------------------------- -# seqclean (transcripts.fasta) finished on machine -# in /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial, without a detectable error. - -alias .,="ls -lhaFG" -# total 69M -# drwxrws--- 3 kalavatt 479 Nov 24 14:12 ./ -# drwxrws--- 14 kalavatt 1.2K Nov 24 13:15 ../ -# -rw-rw---- 1 kalavatt 19M Nov 24 14:12 bak.transcripts.fasta -# drwxr-s--- 2 kalavatt 970 Nov 24 14:12 cleaning_1/ -# -rw-rw-r-- 1 kalavatt 6.9K Nov 24 14:12 err_seqcl_transcripts.fasta.log -# lrwxrwxrwx 1 kalavatt 188 Nov 24 13:23 genome-free_SC_all.Trinity.fasta -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_Trinity_trial/exp_Trinity_trial_genome-free_SC_all/Trinity_trial_genome-free_SC_all.Trinity.fasta -# lrwxrwxrwx 1 kalavatt 195 Nov 24 13:26 genome-guided_SC_all.Trinity.fasta -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_Trinity_trial/exp_Trinity_trial_genome-guided_SC_all/Trinity_trial_genome-guided_SC_all/Trinity-GG.fasta -# -rw-rw-r-- 1 kalavatt 880 Nov 24 14:12 outparts_cln.sort -# -rw-rw-r-- 1 kalavatt 1002 Nov 24 14:12 seqcl_transcripts.fasta.log -# -rw-rw---- 1 kalavatt 218K Nov 24 13:58 tdn.accs -# -rw-rw---- 1 kalavatt 19M Nov 24 13:50 transcripts.fasta -# -rw-rw-r-- 1 kalavatt 1.1M Nov 24 14:12 transcripts.fasta.cidx -# -rw-rw-r-- 1 kalavatt 19M Nov 24 14:12 transcripts.fasta.clean -# -rw-rw-r-- 1 kalavatt 1.3M Nov 24 14:12 transcripts.fasta.cln -``` - -From following the instructions at [PASA_alignment_assembl](github.com/PASApipeline/PASApipeline/wiki/PASA_alignment_assembly), we see, -> The `PASA` pipeline requires separate configuration files for the alignment assembly and later annotation comparison steps, and these are configured separately for each run of the `PASA` pipeline, setting parameters to be used by the various tools and processes executed within the `PASA` pipeline. Configuration file templates are provided as '`$PASAHOME/pasa_conf/pasa.alignAssembly.Template.txt`' and '`$PASAHOME/pasa_conf/pasa.annotationCompare.Template.txt`', and these will be further described when used below. - -`#DONE` Pick up with this tomorrow; basically, I'm trying to understand what I need to do to run something like what's shown on [this page](https://github.com/PASApipeline/PASApipeline/wiki/PASA_RNAseq), all in keeping with (i.e., following) instruction #3 on [this page](https://github.com/PASApipeline/PASApipeline/wiki/PASA_comprehensive_db): -```bash -#!/bin/bash -#EXAMPLE - -# github.com/PASApipeline/PASApipeline/wiki/PASA_RNAseq#strand-specific-rna-seq -#+ -#+ If your gene density is high and you expect transcripts from neighboring -#+ genes to often overlap in their UTR regions, you can perform more stringent -#+ clustering of alignments like so: -${PASAHOME}/Launch_PASA_pipeline.pl \ - -c alignAssembly.config \ - -C \ - -R -g genome_sample.fasta \ - --ALIGNERS blat,gmap \ - -t Trinity.fasta \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 -``` -`#DONE` I need to understand what are appropriate contents/values for the `alignAssembly.config` file; once that's done, I need to get something like the above running with `Singularity` `PASA` (making use of the clean `trinity.fasta` file(s)) and then move on to subsequent steps [here](https://github.com/PASApipeline/PASApipeline/wiki/PASA_comprehensive_db) - - -#### Documentation, details for `PASA`'s' `Launch_PASA_pipeline.pl`, including `*.config` -```bash -#!/bin/bash -#DONTRUN - -grabnode # Default and lowest settings - -ml Singularity/3.5.3 - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial" \ - || echo "cd'ing failed; check on this" - -alias .,="ls -lhaFG" -., - -# Copied from -#+ github.com/PASApipeline/PASApipeline/blob/master/sample_data/mysql.confs/alignAssembly.config -cat << alignAssembly > "./alignAssembly.config" - -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=sample_mydb_pasa - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 - -alignAssembly -# vi alignAssembly.config - - -# What are the options for ${PASAHOME}/Launch_PASA_pipeline.pl? -export PASAHOME=/usr/local/src/PASApipeline -echo "${PASAHOME}" - -singularity run ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/Launch_PASA_pipeline.pl - -``` - -Documentation for `Launch_PASA_pipeline.pl` -
-Click here to expand - -```txt -WARNING: Bind mount '/home/kalavatt => /home/kalavatt' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). - -############################# Options ############################### -# -# * indicates required -# -# -# --config|-c * alignment assembly configuration file -# -# // spliced alignment settings -# --ALIGNERS aligners (available options include: gmap, blat, minimap2... can run using several, ie. 'gmap,blat,minimap2') -# -N max number of top scoring alignments (default: 1) -# --MAX_INTRON_LENGTH|-I (max intron length parameter passed to GMAP or BLAT) (default: 100000) -# --IMPORT_CUSTOM_ALIGNMENTS_GFF3 :only using the alignments supplied in the corresponding GFF3 file. -# --trans_gtf :incorporate cufflinks or stringtie--generated transcripts -# -# -# // actions -# --create|-C flag, create database -# --replace|-r flag, drop database if -C is also given. This will DELETE all your data and it is irreversible. -# --run|-R flag, run alignment/assembly pipeline. -# --annot_compare|-A (see section below; can use with opts -L and --annots) compare to annotated genes. -# --ALT_SPLICE flag, run alternative splicing analysis - -# // input files -# --genome|-g * genome sequence FASTA file (should contain annot db asmbl_id as header accession.) -# --transcripts|-t * transcript db -# -f file containing a list of fl-cdna accessions. -# --TDN file containing a list of accessions corresponding to Trinity (full) de novo assemblies (not genome-guided) -# -# // polyAdenylation site identification ** highly recommended ** -# -T flag,transcript db were trimmed using the TGI seqclean tool. -# -u value, transcript db containing untrimmed sequences (input to seqclean) -# -# -# -# -# Misc: -# --TRANSDECODER flag, run transdecoder to identify candidate full-length coding transcripts -# --CPU multithreading (default: 2) -# --PASACONF path to a user-defined pasa.conf file containing mysql connection info -# (used in place of the $PASAHOME/pasa_conf/conf.txt file) -# (and allows for users to have their own unique mysql connection info) -# (instead of the pasa role account) -# -# -d flag, Debug -# -h flag, print this option menu and quit -# -######### -# -# // Transcript alignment clustering options (clusters are fed into the PASA assembler): -# -# By default, clusters together transcripts based on any overlap (even 1 base!). -# -# Alternatives: -# -# --stringent_alignment_overlap (suggested: 30.0) overlapping transcripts must have this min % overlap to be clustered. -# -# --gene_overlap (suggested: 50.0) transcripts overlapping existing gene annotations are clustered. Intergenic alignments are clustered by default mechanism. -# * if --gene_overlap, must also specify --annots with annotations in recognizable format (gtf, gff3, or data adapted) (just examines 'gene' rows, though). -# -# -# -# --INVALIDATE_SINGLE_EXON_ESTS :invalidates single exon ests so that none can be built into pasa assemblies. -# -# -# --transcribed_is_aligned_orient flag for strand-specific RNA-Seq assemblies, the aligned orientation should correspond to the transcribed orientation. -# -# -################ -# -# // Annotation comparison options (used in conjunction with -A at top). -# -# -L load annotations (use in conjunction with --annots) -# --annots existing gene annotations in recognized format (gtf, gff3, or custom adapted). -# --GENETIC_CODE (default: universal, options: Euplotes, Tetrahymena, Candida, Acetabularia) -# -###################### Process Args and Options ##################### -``` -
-
- - -### Attempt to call `Launch_PASA_pipeline.pl` (2022-1124) -On calling `Launch_PASA_pipeline.pl` -```bash -#!/bin/bash -#DONTRUN - -tmux # Rename the session to 'PASA' -grabnode # Default and lowest settings, except 2 threads -echo "${SLURM_CPUS_ON_NODE}" # 2 - -ml Singularity/3.5.3 - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial" \ - || echo "cd'ing failed; check on this" - -export SINGULARITY_BIND=${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial:/mnt/data -echo "${SINGULARITY_BIND}" -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial:/mnt/data - -export PASAHOME=/usr/local/src/PASApipeline -echo "${PASAHOME}" -# /usr/local/src/PASApipeline - -singularity run ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/Launch_PASA_pipeline.pl \ - -c alignAssembly.config \ - -I 1002 \ - -C \ - -R \ - -g "${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -t transcripts.fasta.clean \ - -T \ - -u transcripts.fasta \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --TDN tdn.accs \ - --ALIGNERS blat,gmap \ - --CPU "${SLURM_CPUS_ON_NODE}" - -# Building the above command from... -#+ - 1. github.com/PASApipeline/PASApipeline/wiki/PASA_alignment_assembly#transcript-alignments-followed-by-alignment-assembly -#+ (code chunk below the header) -#+ -#+ ${PASAHOME}/Launch_PASA_pipeline.pl \ -#+ -c alignAssembly.config \ -#+ -C \ -#+ -R \ -#+ -g genome_sample.fasta \ -#+ -t all_transcripts.fasta.clean \ -#+ -T \ -#+ -u all_transcripts.fasta \ -#+ -f FL_accs.txt \ -#+ --ALIGNERS blat,gmap,minimap2 \ -#+ --CPU 2 -#+ -#+ - 2. github.com/PASApipeline/PASApipeline/wiki/PASA_RNAseq#strand-specific-rna-seq -#+ (second of three code chunks below the header) -#+ -#+ ${PASAHOME}/Launch_PASA_pipeline.pl \ -#+ -c alignAssembly.config \ -#+ -C -R \ -#+ -g genome_sample.fasta \ -#+ --ALIGNERS blat,gmap\ -#+ -t Trinity.fasta \ -#+ --transcribed_is_aligned_orient \ -#+ --stringent_alignment_overlap 30.0 - -# -connecting to MySQL db: sample_mydb_pasa -# -*** Running PASA pipeine: -# * [Thu Nov 24 20:10:06 2022] Running CMD: /usr/local/src/PASApipeline/scripts/create_mysql_cdnaassembly_db.dbi -c alignAssembly.config -S '/usr/local/src/PASApipeline/schema/cdna_alignment_mysqlschema' -# perl: warning: Falling back to the standard locale ("C"). -# DBI connect('database=;host=localhost','root',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /usr/local/src/PASApipeline/PerlLib/DB_connect.pm line 72. -# Cannot connect to : Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /usr/local/src/PASApipeline/scripts/create_mysql_cdnaassembly_db.dbi line 57. -# Error, cmd: /usr/local/src/PASApipeline/scripts/create_mysql_cdnaassembly_db.dbi -c alignAssembly.config -S '/usr/local/src/PASApipeline/schema/cdna_alignment_mysqlschema' died with ret 65280 No such file or directory at /usr/local/src/PASApipeline/PerlLib/Pipeliner.pm line 187. -# Pipeliner::run(Pipeliner=HASH(0x55de4ede1b48)) called at /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl line 1047 - -# Try changing the name of the database -mv alignAssembly.config bak.alignAssembly.config - -cat << alignAssembly > "./alignAssembly.config" - -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=PASA - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 - -alignAssembly -# vi alignAssembly.config - -singularity run ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/Launch_PASA_pipeline.pl \ - -c alignAssembly.config \ - -I 1002 \ - -C \ - -R \ - -g "${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -t transcripts.fasta.clean \ - -T \ - -u transcripts.fasta \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --TDN tdn.accs \ - --ALIGNERS blat,gmap \ - --CPU "${SLURM_CPUS_ON_NODE}" -``` - - -#### Troubleshooting the errors from calling `Launch_PASA_pipeline.pl` -The call results in an error (see below), so I left a message on the [Trinity forum](https://groups.google.com/g/trinityrnaseq-users) and am now awaiting a response from Brian Haas: - - -##### Message from me (2022-1124) -Hi, - -Following the advice [here](https://groups.google.com/g/trinityrnaseq-users/c/DWctG7wLNYY/m/RGn6ZH_fAQAJ, I am trying to run `PASA` `Launch_PASA_pipeline.pl` for a comprehensive transcriptome database. I'm not sure how to interpret an error message I get quickly after calling the script. Can you help me to understand the error and let me know any potential steps to resolve it? - -Here's how I'm calling `Launch_PASA_pipeline.pl` (I worked out the call from info [here](http://github.com/PASApipeline/PASApipeline/wiki/PASA_alignment_assembly#transcript-alignments-followed-by-alignment-assembly) (code chunk below the header) and [here](http://github.com/PASApipeline/PASApipeline/wiki/PASA_RNAseq#strand-specific-rna-seq) (second of three code chunks below the header)—please let me know if you see anything problematic): - -```bash -export SINGULARITY_BIND=${HOME}/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial:/mnt/data - -export PASAHOME=/usr/local/src/PASApipeline - -singularity run ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/Launch_PASA_pipeline.pl \ - -c alignAssembly.config \ - -I 1002 \ - -C \ - -R \ - -g "${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -t transcripts.fasta.clean \ - -T \ - -u transcripts.fasta \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --TDN tdn.accs \ - --ALIGNERS blat,gmap \ - --CPU "${SLURM_CPUS_ON_NODE}" -``` - -And here's the error message: -```txt -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). --connecting to MySQL db: PASA --*** Running PASA pipeine: -* [Thu Nov 24 20:23:06 2022] Running CMD: /usr/local/src/PASApipeline/scripts/create_mysql_cdnaassembly_db.dbi -c alignAssembly.config -S '/usr/local/src/PASApipeline/schema/cdna_alignment_mysqlschema' -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -DBI connect('database=;host=localhost','root',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /usr/local/src/PASApipeline/PerlLib/DB_connect.pm line 72. -Cannot connect to : Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /usr/local/src/PASApipeline/scripts/create_mysql_cdnaassembly_db.dbi line 57. -Error, cmd: /usr/local/src/PASApipeline/scripts/create_mysql_cdnaassembly_db.dbi -c alignAssembly.config -S '/usr/local/src/PASApipeline/schema/cdna_alignment_mysqlschema' died with ret 65280 No such file or directory at /usr/local/src/PASApipeline/PerlLib/Pipeliner.pm line 187. - Pipeliner::run(Pipeliner=HASH(0x55c7998992b8)) called at /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl line 1047 -``` - -Here are the contents of `alignAssembly.conf`: -```bash -cat << alignAssembly > "./alignAssembly.config" - -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=PASA - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 - -alignAssembly -``` - -I also called the `Perl` script with an `alignAssembly.conf` that has` DATABASE=sample_mydb_pasa`, like the example in the `PASA` repo. That call resulted in the same error message. - -Thanks, -Kris - - -##### Response from Brian Haas (2022-1125) -Hi Kris, - -In your `alignAssembly.conf` file, set the -`DATABASE=/exact/path/to/your/working/directory/sample_mydb_pasa.sqlite` - -which will use the `sqlite` backend instead of `mysql` - -then just rerun your original command. - -hope this helps, - -~b - - -### Attempt to call `Launch_PASA_pipeline.pl` following Brian Haas' advice (2022-1125) -Rerun the call to `Launch_PASA_pipeline.pl` based on advice from Brian Haas: -```bash -#!/bin/bash -#DONTRUN - -tmux # Rename the session to 'PASA' -grabnode # Default and lowest settings, except 2 threads -echo "${SLURM_CPUS_ON_NODE}" # 2 - -ml Singularity/3.5.3 - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial" \ - || echo "cd'ing failed; check on this" - -export SINGULARITY_BIND=${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial:/mnt/data -echo "${SINGULARITY_BIND}" -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial:/mnt/data - -export PASAHOME=/usr/local/src/PASApipeline -echo "${PASAHOME}" -# /usr/local/src/PASApipeline - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial - -if [[ -f alignAssembly.config ]]; then rm alignAssembly.config; fi -cat << alignAssembly > "./alignAssembly.config" - -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial/sample_mydb_pasa.sqlite - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 - -alignAssembly -# vi alignAssembly.config - -singularity run ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/Launch_PASA_pipeline.pl \ - -c alignAssembly.config \ - -I 1002 \ - -C \ - -R \ - -g "${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -t transcripts.fasta.clean \ - -T \ - -u transcripts.fasta \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --TDN tdn.accs \ - --ALIGNERS blat,gmap \ - --CPU "${SLURM_CPUS_ON_NODE}" \ - > >(tee -a stdout.log.txt) \ - 2> >(tee -a stderr.log.txt >&2) - -# Great! It's running; stopped to adjust the above so that STDERR and STDOUT is saved to files (a lot of information is printed to the screen) -``` - -This resulted in an error involving the pipeline's call to script `assemble_clusters.dbi`; thus, submitted another message on the [Trinity forum](https://groups.google.com/g/trinityrnaseq-users) and am now awaiting a response from Brian Haas: - - -#### Again, troubleshooting the errors from calling `Launch_PASA_pipeline.pl` - - -##### Subsequent message to Brian after encountering another error (2022-1125) -Thank you, Brian. - -`Launch_PASA_pipeline.pl` ran for a good bit before failing with an error; this error is associated with the pipeline's call to `assemble_clusters.dbi`. Do you have any insights or advice for this? - -Below, I've pasted what was printed to `STDERR`, and I've attached the `STDERR` log too (for better readability, I removed Perl warnings about my locale settings). I've also included how I called `Launch_PASA_pipeline.pl` (I'm calling it with two threads) and the contents of `alignAssembly.config`. Also, I've printed the contents of my work directory so you can see what files have been generated by the pipeline so far. - -I appreciate your help. Thanks again, -Kris - -
-Click here to expand - -The error messages associated with `alignAssembly.config`: -```txt -* [Fri Nov 25 10:47:03 2022] Running CMD: /usr/local/src/PASApipeline/scripts/assemble_clusters.dbi -G /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -M '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial/sample_mydb_pasa.sqlite' -T 2 > sample_mydb_pasa.sqlite.pasa_alignment_assembly_building.ascii_illustrations.out - -Thread 2 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402024-0.841504182973043.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 13555. -Thread 3 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402024-0.821881816563295.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 5278. -Thread 1 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402024-0.401388888320984.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 3838. -ERROR, thread 1 exited with error Can't open file /loc/scratch/4593262/pasa.1669402024-0.401388888320984.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 3838. - -ERROR, thread 2 exited with error Can't open file /loc/scratch/4593262/pasa.1669402024-0.841504182973043.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 13555. - -ERROR, thread 3 exited with error Can't open file /loc/scratch/4593262/pasa.1669402024-0.821881816563295.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 5278. - -Thread 5 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402025-0.580776268922822.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 7333. -Thread 4 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402025-0.448308551059203.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 25534. -Thread 6 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402025-0.567081061731191.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 1430. -ERROR, thread 4 exited with error Can't open file /loc/scratch/4593262/pasa.1669402025-0.448308551059203.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 25534. - -ERROR, thread 5 exited with error Can't open file /loc/scratch/4593262/pasa.1669402025-0.580776268922822.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 7333. - -ERROR, thread 6 exited with error Can't open file /loc/scratch/4593262/pasa.1669402025-0.567081061731191.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 1430. - -Thread 8 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402026-0.365538701488735.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 4504. -Thread 7 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402026-0.910045815006928.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 9616. -Thread 9 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402026-0.752270791986124.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 18184. -ERROR, thread 7 exited with error Can't open file /loc/scratch/4593262/pasa.1669402026-0.910045815006928.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 9616. - -ERROR, thread 8 exited with error Can't open file /loc/scratch/4593262/pasa.1669402026-0.365538701488735.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 4504. - -ERROR, thread 9 exited with error Can't open file /loc/scratch/4593262/pasa.1669402026-0.752270791986124.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 18184. - -Thread 10 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402027-0.789667837861092.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 9379. -Thread 11 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402027-0.572378615689562.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 12431. -Thread 12 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402027-0.987498708841489.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 11115. -ERROR, thread 10 exited with error Can't open file /loc/scratch/4593262/pasa.1669402027-0.789667837861092.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 9379. - -ERROR, thread 11 exited with error Can't open file /loc/scratch/4593262/pasa.1669402027-0.572378615689562.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 12431. - -ERROR, thread 12 exited with error Can't open file /loc/scratch/4593262/pasa.1669402027-0.987498708841489.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 11115. - -Thread 14 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402028-0.0183860194674743.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 15409. -Thread 13 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402028-0.816049709756957.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 17971. -Thread 15 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402028-0.198708701952459.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 13074. -ERROR, thread 13 exited with error Can't open file /loc/scratch/4593262/pasa.1669402028-0.816049709756957.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 17971. - -ERROR, thread 14 exited with error Can't open file /loc/scratch/4593262/pasa.1669402028-0.0183860194674743.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 15409. - -ERROR, thread 15 exited with error Can't open file /loc/scratch/4593262/pasa.1669402028-0.198708701952459.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 13074. - -Thread 16 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402029-0.0687543715621395.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 18190. -ERROR, thread 16 exited with error Can't open file /loc/scratch/4593262/pasa.1669402029-0.0687543715621395.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 18190. - -Thread 17 terminated abnormally: Can't open file /loc/scratch/4593262/pasa.1669402029-0.304084447519021.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 15803. -ERROR, thread 17 exited with error Can't open file /loc/scratch/4593262/pasa.1669402029-0.304084447519021.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 15803. - -Error, 17 threads failed. -Error, cmd: /usr/local/src/PASApipeline/scripts/assemble_clusters.dbi -G /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -M '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial/sample_mydb_pasa.sqlite' -T 2 > sample_mydb_pasa.sqlite.pasa_alignment_assembly_building.ascii_illustrations.out died with ret 7424 No such file or directory at /usr/local/src/PASApipeline/PerlLib/Pipeliner.pm line 187. - Pipeliner::run(Pipeliner=HASH(0x556e467dd2e8)) called at /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl line 1047 -``` - -Here's how I'm calling `Launch_PASA_pipeline.pl` (`--CPU 2`): -```bash - -singularity run ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/Launch_PASA_pipeline.pl \ - -c alignAssembly.config \ - -I 1002 \ - -C \ - -R \ - -g "${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -t transcripts.fasta.clean \ - -T \ - -u transcripts.fasta \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --TDN tdn.accs \ - --ALIGNERS blat,gmap \ - --CPU "${SLURM_CPUS_ON_NODE}" \ - > >(tee -a stdout.log.txt) \ - 2> >(tee -a stderr.log.txt >&2) -``` - -And here are the contents of `alignAssembly.config`: -```bash -cat << alignAssembly > "./alignAssembly.config" - -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial/sample_mydb_pasa.sqlite - - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 - -alignAssembly -``` - -Contents of work directory (`ls -lhaFG`): -```bash -total 131M -drwxrws--- 7 kalavatt 2.1K Nov 25 11:39 ./ -drwxrws--- 14 kalavatt 1.4K Nov 25 11:11 ../ --rw-r--r-- 1 kalavatt 8 Nov 25 10:03 11.ooc --rw-rw---- 1 kalavatt 788 Nov 25 09:50 alignAssembly.config --rw-r--r-- 1 kalavatt 5.2M Nov 25 10:11 alignment.validations.output -drwxr-sr-x 2 kalavatt 0 Nov 25 10:47 assemblies/ --rw-rw---- 1 kalavatt 679 Nov 24 19:07 bak.alignAssembly.config --rw-rw---- 1 kalavatt 19M Nov 24 14:12 bak.transcripts.fasta -lrwxrwxrwx 1 kalavatt 52 Nov 25 10:03 blat.spliced_alignments.gff3 -> pblat_outdir/transcripts.fasta.clean.pslx.top_1.gff3 -drwxr-s--- 2 kalavatt 970 Nov 24 19:24 cleaning_1/ --rw-rw-r-- 1 kalavatt 6.9K Nov 24 14:12 err_seqcl_transcripts.fasta.log -lrwxrwxrwx 1 kalavatt 188 Nov 24 13:23 genome-free_SC_all.Trinity.fasta -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_Trinity_trial/exp_Trinity_trial_genome-free_SC_all/Trinity_trial_genome-free_SC_all.Trinity.fasta -lrwxrwxrwx 1 kalavatt 195 Nov 24 13:26 genome-guided_SC_all.Trinity.fasta -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_Trinity_trial/exp_Trinity_trial_genome-guided_SC_all/Trinity_trial_genome-guided_SC_all/Trinity-GG.fasta --rw-r--r-- 1 kalavatt 4.6M Nov 25 10:03 gmap.spliced_alignments.gff3 --rw-r--r-- 1 kalavatt 0 Nov 25 10:03 gmap.spliced_alignments.gff3.completed --rw-rw-r-- 1 kalavatt 880 Nov 24 14:12 outparts_cln.sort -drwxr-sr-x 2 kalavatt 223 Nov 25 10:46 pasa_run.log.dir/ -drwxr-sr-x 2 kalavatt 1.2K Nov 25 10:47 __pasa_sample_mydb_pasa.sqlite_SQLite_chkpts/ --rw-r--r-- 1 kalavatt 6.9K Nov 25 10:47 __pasa_sample_mydb_pasa.sqlite_SQLite_chkpts.cmds_log -drwxr-sr-x 3 kalavatt 134 Nov 25 11:39 pblat_outdir/ --rw-r--r-- 1 kalavatt 16M Nov 25 10:47 sample_mydb_pasa.sqlite --rw-r--r-- 1 kalavatt 155K Nov 25 10:19 sample_mydb_pasa.sqlite.failed_blat_alignments.gff3 --rw-r--r-- 1 kalavatt 321K Nov 25 10:20 sample_mydb_pasa.sqlite.failed_blat_alignments.gtf --rw-r--r-- 1 kalavatt 82K Nov 25 10:27 sample_mydb_pasa.sqlite.failed_gmap_alignments.gff3 --rw-r--r-- 1 kalavatt 187K Nov 25 10:27 sample_mydb_pasa.sqlite.failed_gmap_alignments.gtf --rw-r--r-- 1 kalavatt 8.1K Nov 25 10:47 sample_mydb_pasa.sqlite.pasa_alignment_assembly_building.ascii_illustrations.out --rw-r--r-- 1 kalavatt 546K Nov 25 10:36 sample_mydb_pasa.sqlite.polyAsites.fasta --rw-r--r-- 1 kalavatt 1.8M Nov 25 10:15 sample_mydb_pasa.sqlite.valid_blat_alignments.bed --rw-r--r-- 1 kalavatt 2.3M Nov 25 10:13 sample_mydb_pasa.sqlite.valid_blat_alignments.gff3 --rw-r--r-- 1 kalavatt 6.2M Nov 25 10:19 sample_mydb_pasa.sqlite.valid_blat_alignments.gtf --rw-r--r-- 1 kalavatt 1.9M Nov 25 10:23 sample_mydb_pasa.sqlite.valid_gmap_alignments.bed --rw-r--r-- 1 kalavatt 2.3M Nov 25 10:21 sample_mydb_pasa.sqlite.valid_gmap_alignments.gff3 --rw-r--r-- 1 kalavatt 6.5M Nov 25 10:27 sample_mydb_pasa.sqlite.valid_gmap_alignments.gtf --rw-rw-r-- 1 kalavatt 1002 Nov 24 14:12 seqcl_transcripts.fasta.log --rw-rw---- 1 kalavatt 40K Nov 25 11:19 stderr.log.clean.txt --rw-rw---- 1 kalavatt 55K Nov 25 10:47 stderr.log.txt --rw-rw---- 1 kalavatt 682 Nov 25 10:04 stdout.log.txt --rw-rw---- 1 kalavatt 218K Nov 24 13:58 tdn.accs --rw-r--r-- 1 kalavatt 0 Nov 25 10:03 tmp-5937-85746-out --rw-r--r-- 1 kalavatt 0 Nov 25 10:03 tmp-5937-85746-out.tmp.1 --rw-rw---- 1 kalavatt 19M Nov 24 13:50 transcripts.fasta --rw-rw-r-- 1 kalavatt 1.1M Nov 24 14:12 transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 19M Nov 24 14:12 transcripts.fasta.clean --rw-r--r-- 1 kalavatt 1.1M Nov 25 10:04 transcripts.fasta.clean.cidx --rw-r--r-- 1 kalavatt 816K Nov 25 09:58 transcripts.fasta.clean.fai --rw-rw-r-- 1 kalavatt 1.3M Nov 24 14:12 transcripts.fasta.cln -``` -
-
- - -##### Response from Brian (2022-1125) -Hi Kris, - -It looks like it can't access `/loc/scratch/` - -Assuming `/loc/scratch` exists on your system, you might just need to bind that area in your singularity command. Something like this: - -```bash -singularity -B /loc/scratch -B `pwd` run ...... -``` - -the `-B` *bactick* `pwd` *backtick* just adds in your current working directory too, which I think happens automatically, but probably safer to just include it explicitly given that we're binding another area too. - -best, - -~b - - -##### Follow-up from me (2022-1125) -Thanks, Brian! Will `Launch_PASA_pipeline.pl` pick up with the step it left off at? - --Kris - - -##### Follow-up response from Brian (2022-1125) -Yes, should pick up where it left off. - -best of luck! - -~~`#DONE` Copy in the responses from Brian Haas to my questions (copy those in as well)~~ -~~`#DONE` Move forward with the `PASA` pipeline taking into account Brian's suggestions~~ - - -### Attempt to continue `Launch_PASA_pipeline.pl` following Brian Haas' advice (2022-1126) - -#### Understanding `tmux` on FHCC `rhino` -```bash -#!/bin/bash -#DONTRUN - -# Testing tmux, starting from local ------------------------------------------ -# Start a session -------------------- -ssh rhino # rhino01 - -tmux new -s PASA - -exit - -# Is the session maintained? --------- -ssh rhino # rhino03 - -tmux ls -# PASA: 1 windows (created Fri Nov 25 09:23:21 2022) [247x49] -# The session is maintained; wait, actually, this 'PASA' is the one I set up -#+ yesterday: It's specific to rhino03 and I'm not actually on the one I just -#+ started on rhino01 -#DONE Look into using tmux with rhino/gizmo more later -``` - -Important info on using [`tmux`](https://tmuxcheatsheet.com/) with FHCC rhino from [this link](https://sciwiki.fredhutch.org/scicomputing/access_methods/#screen-and-tmux): -> A note about screen: `ssh rhino` will assign you to one of the available, specific servers (i.e., `rhino01`, `rhino02`, `rhino03`) and screen instances are not shared across the servers. If you are interested in using screen to run a persistent session on the `rhino` cluster, consider: -> ->1. accessing a specific server directly, e.g., `ssh rhino01` ->2. making note of which server you have logged into by `ssh rhino` and then log directly into it on your next session - - -#### Set things up, get into the work directory -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# On rhino3 right now... -tmux a -t PASA - -# Get on a compute node -grabnode # Two cores and default settings - -echo "${SLURM_CPUS_ON_NODE}" # 2 - -# Load in Singularity -ml Singularity/3.5.3 - -# Get into the work directory -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial" \ - || echo "cd'ing failed; check on this" - -export PASAHOME=/usr/local/src/PASApipeline - -# Check that we have an "alignAssembly.config" -if [[ -f alignAssembly.config ]]; then - echo "./alignAssembly.config is present" -else - echo "./alignAssembly.config is not present; generate it" -fi -# ./alignAssembly.config is present -``` - - -#### Drawing on Brian's advice/testing out `singularity --bind` arguments -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Does /loc/scratch exist? -ls -lhaFG /loc/scratch -# total 176K -# drwxr-xr-x 35 root 4.0K Nov 26 08:18 ./ -# drwxr-xr-x 4 root 4.0K Jan 20 2021 ../ -# drwxr-xr-x 2 fgao 4.0K Aug 25 2021 36150564/ -# drwxr-xr-x 3 nespy 4.0K Nov 25 13:20 4600230/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:08 4609096/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:08 4609097/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:08 4609098/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:08 4609099/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:08 4609100/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:08 4609101/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:13 4609113/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:13 4609114/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:13 4609115/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:13 4609116/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:13 4609117/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:13 4609118/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:13 4609119/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:13 4609120/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:13 4609121/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:13 4609122/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:13 4609123/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:13 4609124/ -# drwxr-xr-x 2 kalavatt 4.0K Nov 26 08:32 4609128/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:18 4609139/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:18 4609140/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:18 4609141/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:18 4609142/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:18 4609143/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:18 4609144/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:18 4609145/ -# drwxr-xr-x 3 cwolock 4.0K Nov 26 08:18 4609146/ -# drwxr-xr-x 3 pbradley 4.0K Apr 11 2022 53441931/ -# drwx------ 2 macaque-svc 4.0K Jan 20 2021 macaque-svc/ -# drwx------ 723 marmoset-svc 36K Oct 15 23:42 marmoset-svc/ -# drwx------ 6 smrtanalysis 4.0K Aug 9 17:07 smrtlink/ -# OK, so we know /loc/scratch exists - -# Test out the binding suggested by Brian advice -singularity shell \ - --bind /loc/scratch \ - --bind $(pwd) \ - ~/singularity-docker-etc/PASA.sif -# WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial, may not be available -# bash: _powerline_status_wrapper: command not found -# bash: _omb_util_prompt_command_hook: command not found -# Singularity> - -# In the container shell now... -ls -lhaFG /loc/scratch -# total 172K -# drwxr-xr-x 35 root 4.0K Nov 26 08:18 ./ -# drwxr-xr-x 3 kalavatt 60 Nov 26 08:36 ../ -# drwxr-xr-x 2 61515 4.0K Aug 25 2021 36150564/ -# drwxr-xr-x 3 59763 4.0K Nov 25 13:20 4600230/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:08 4609096/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:08 4609097/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:08 4609098/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:08 4609099/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:08 4609100/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:08 4609101/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:13 4609113/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:13 4609114/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:13 4609115/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:13 4609116/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:13 4609117/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:13 4609118/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:13 4609119/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:13 4609120/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:13 4609121/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:13 4609122/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:13 4609123/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:13 4609124/ -# drwxr-xr-x 2 kalavatt 4.0K Nov 26 08:32 4609128/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:18 4609139/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:18 4609140/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:18 4609141/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:18 4609142/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:18 4609143/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:18 4609144/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:18 4609145/ -# drwxr-xr-x 3 75929 4.0K Nov 26 08:18 4609146/ -# drwxr-xr-x 3 40534 4.0K Apr 11 2022 53441931/ -# drwx------ 2 9464 4.0K Jan 20 2021 macaque-svc/ -# drwx------ 723 5133 36K Oct 15 23:42 marmoset-svc/ -# drwx------ 6 9277 4.0K Aug 9 17:07 smrtlink/ - -ls -lhaFG /mnt/data -# ls: cannot access '/mnt/data': No such file or directory - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_PASA_trial - -cd / -ls -lhaFG -# total 288K -# drwxr-xr-x 1 kalavatt 100 Nov 26 08:36 ./ -# drwxr-xr-x 1 kalavatt 100 Nov 26 08:36 ../ -# lrwxrwxrwx 1 root 27 Nov 23 12:12 .exec -> .singularity.d/actions/exec* -# lrwxrwxrwx 1 root 26 Nov 23 12:12 .run -> .singularity.d/actions/run* -# lrwxrwxrwx 1 root 28 Nov 23 12:12 .shell -> .singularity.d/actions/shell* -# drwxr-xr-x 5 root 127 Nov 23 12:12 .singularity.d/ -# lrwxrwxrwx 1 root 27 Nov 23 12:12 .test -> .singularity.d/actions/test* -# lrwxrwxrwx 1 root 7 Jul 23 2021 bin -> usr/bin/ -# drwxr-xr-x 2 root 3 Apr 15 2020 boot/ -# drwxr-xr-x 17 root 4.4K Nov 14 10:21 dev/ -# lrwxrwxrwx 1 root 36 Nov 23 12:12 environment -> .singularity.d/env/90-environment.sh* -# drwxr-xr-x 53 root 1.8K Aug 6 2021 etc/ -# drwxr-xr-x 3 kalavatt 60 Nov 26 08:36 fh/ -# drwxr-xr-x 1 kalavatt 60 Nov 26 08:36 home/ -# lrwxrwxrwx 1 root 7 Jul 23 2021 lib -> usr/lib/ -# lrwxrwxrwx 1 root 9 Jul 23 2021 lib32 -> usr/lib32/ -# lrwxrwxrwx 1 root 9 Jul 23 2021 lib64 -> usr/lib64/ -# lrwxrwxrwx 1 root 10 Jul 23 2021 libx32 -> usr/libx32/ -# drwxr-xr-x 3 kalavatt 60 Nov 26 08:36 loc/ -# drwxr-xr-x 2 root 3 Jul 23 2021 media/ -# drwxr-xr-x 2 root 3 Jul 23 2021 mnt/ -# drwxr-xr-x 2 root 3 Jul 23 2021 opt/ -# dr-xr-xr-x 624 root 0 Sep 10 16:01 proc/ -# drwx------ 3 root 90 Feb 3 2022 root/ -# drwxr-xr-x 8 root 124 Aug 6 2021 run/ -# lrwxrwxrwx 1 root 8 Jul 23 2021 sbin -> usr/sbin/ -# lrwxrwxrwx 1 root 24 Nov 23 12:12 singularity -> .singularity.d/runscript* -# drwxr-xr-x 2 root 3 Jul 23 2021 srv/ -# dr-xr-xr-x 13 root 0 Sep 10 16:01 sys/ -# drwxrwxrwt 42 root 284K Nov 26 08:39 tmp/ -# drwxr-xr-x 14 root 241 Aug 6 2021 usr/ -# drwxr-xr-x 11 root 172 Jul 23 2021 var/ - -# OK, it seems to work; exit the container shell -exit -``` - - -#### Continuing the `PASA` pipeline from where it left off yesterday -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Get into the appropriate conda/mamba environment -Trinity_env - -# Rename the std{err,out} files from yesterday so that they're not overwritten -mamba install -c bioconda rename - -ls -lhaFG std{err,out}.*.txt -# -rw-rw---- 1 kalavatt 40K Nov 25 11:19 stderr.log.clean.txt -# -rw-rw---- 1 kalavatt 55K Nov 25 10:47 stderr.log.txt -# -rw-rw---- 1 kalavatt 682 Nov 25 10:04 stdout.log.txt - -rename -n 's/std/attempt-2022-1125.std/g' std{err,out}.*.txt -# 'stderr.log.clean.txt' would be renamed to 'attempt-2022-1125.stderr.log.clean.txt' -# 'stderr.log.txt' would be renamed to 'attempt-2022-1125.stderr.log.txt' -# 'stdout.log.txt' would be renamed to 'attempt-2022-1125.stdout.log.txt' - -rename -n 's/log.txt/log.attempt-2022-1125.txt/g' std{err,out}.*.txt -# 'stderr.log.txt' would be renamed to 'stderr.log.attempt-2022-1125.txt' -# 'stdout.log.txt' would be renamed to 'stdout.log.attempt-2022-1125.txt' - -rename 's/log.txt/log.attempt-2022-1125.txt/g' std{err,out}.*.txt -rename 's/clean.txt/clean.attempt-2022-1125.txt/g' std{err,out}.*.txt - -ls -lhaFG std{err,out}.*.txt -# -rw-rw---- 1 kalavatt 55K Nov 25 10:47 stderr.log.attempt-2022-1125.txt -# -rw-rw---- 1 kalavatt 40K Nov 25 11:19 stderr.log.clean.attempt-2022-1125.txt -# -rw-rw---- 1 kalavatt 682 Nov 25 10:04 stdout.log.attempt-2022-1125.txt - -# Launch Launch_PASA_pipeline.pl with the specified --bind arguments; the -#+ pipeline should pick up where it left off -singularity run \ - --bind /loc/scratch \ - --bind $(pwd) \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/Launch_PASA_pipeline.pl \ - -c alignAssembly.config \ - -I 1002 \ - -C \ - -R \ - -g "${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -t transcripts.fasta.clean \ - -T \ - -u transcripts.fasta \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --TDN tdn.accs \ - --ALIGNERS blat,gmap \ - --CPU "${SLURM_CPUS_ON_NODE}" \ - > >(tee -a stdout.log.txt) \ - 2> >(tee -a stderr.log.txt >&2) -# It's running... -``` - - -#### Checking on output from completion of the `PASA` pipeline -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# The pipeline completed at ~0931; it seems to have completed successfully -rename -n 's/log.txt/log.attempt-2022-1126.txt/g' std{err,out}.log.txt -# 'stderr.log.txt' would be renamed to 'stderr.log.attempt-2022-1126.txt' -# 'stdout.log.txt' would be renamed to 'stdout.log.attempt-2022-1126.txt' - -rename 's/log.txt/log.attempt-2022-1126.txt/g' std{err,out}.log.txt - -# Created a "clean" version of STDERR by hand (by "clean", I mean I removed -#+ all Perl locale warnings) - -ls -lhaFG std*.txt -# -rw-rw---- 1 kalavatt 55K Nov 25 10:47 stderr.log.attempt-2022-1125.txt -# -rw-rw---- 1 kalavatt 40K Nov 26 09:27 stderr.log.attempt-2022-1126.txt -# -rw-rw---- 1 kalavatt 40K Nov 25 11:19 stderr.log.clean.attempt-2022-1125.txt -# -rw-rw---- 1 kalavatt 33K Nov 26 09:43 stderr.log.clean.attempt-2022-1126.txt -# -rw-rw---- 1 kalavatt 682 Nov 25 10:04 stdout.log.attempt-2022-1125.txt -# -rw-rw---- 1 kalavatt 197 Nov 26 09:31 stdout.log.attempt-2022-1126.txt - -# It seems we can generate reports based on the output from running the -#+ pipeline; apparently, we need to launch PasaWeb following the instructions -#+ here: -#+ -#+ github.com/PASApipeline/PASApipeline/wiki/PasaWeb -``` - -`#TODO` Learn to use and launch [`PasaWeb`](https://github.com/PASApipeline/PASApipeline/wiki/PasaWeb) to get quality metrics, etc. for the `PASA`-pipeline output -
-
- - -## Setting up the preprocessing pipeline for `Trinity` -...for genome-free transcriptome assembly (will also influence *at least* one step of genome-guided transcriptome assembly); draws on material presented [here](https://informatics.fas.harvard.edu/best-practices-for-de-novo-transcriptome-assembly-with-trinity.html) - - -### Getting started (2022-1125, 2022-1126) -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" \ - || echo "cd'ing failed; check on this" - -Trinity_env - -conda list -``` - -
-Printed to terminal: - -```txt -# packages in environment at /home/kalavatt/miniconda3/envs/Trinity_env: -# -# Name Version Build Channel -_libgcc_mutex 0.1 conda_forge conda-forge -_openmp_mutex 4.5 2_gnu conda-forge -bedtools 2.30.0 h7d7f7ad_2 bioconda -bz2file 0.98 py37h06a4308_1 -bzip2 1.0.8 h7b6447c_0 -ca-certificates 2022.10.11 h06a4308_0 -certifi 2022.9.24 py37h06a4308_0 -cutadapt 2.6 py37h516909a_0 bioconda -dbus 1.13.18 hb2f20db_0 -dnaio 0.3 py37h14c3975_1 bioconda -expat 2.4.9 h6a678d5_0 -fastqc 0.11.9 hdfd78af_1 bioconda -font-ttf-dejavu-sans-mono 2.37 hd3eb1b0_0 -fontconfig 2.13.1 hef1e5e3_1 -freetype 2.12.1 h4a9f257_0 -gdbm 1.18 hd4cb3f1_4 -gettext 0.21.1 h27087fc_0 conda-forge -glib 2.70.2 h780b84a_4 conda-forge -glib-tools 2.70.2 h780b84a_4 conda-forge -icu 58.2 he6710b0_3 -kmer-jellyfish 2.3.0 h9f5acd7_3 bioconda -ld_impl_linux-64 2.38 h1181459_1 -libffi 3.4.2 h7f98852_5 conda-forge -libgcc-ng 12.2.0 h65d4601_19 conda-forge -libglib 2.70.2 h174f98d_4 conda-forge -libgomp 12.2.0 h65d4601_19 conda-forge -libiconv 1.17 h166bdaf_0 conda-forge -libnsl 2.0.0 h7f98852_0 conda-forge -libpng 1.6.37 hbc83047_0 -libstdcxx-ng 11.2.0 h1234567_1 -libuuid 1.41.5 h5eee18b_0 -libxcb 1.15 h7f8727e_0 -libxml2 2.9.14 h74e7548_0 -libzlib 1.2.13 h166bdaf_4 conda-forge -ncurses 6.3 h5eee18b_3 -openjdk 11.0.13 h87a67e3_0 -openssl 3.0.7 h166bdaf_0 conda-forge -pcre 8.45 h295c915_0 -perl 5.34.0 h5eee18b_2 -pigz 2.6 h27cfd23_0 -pip 22.2.2 py37h06a4308_0 -python 3.7.12 hf930737_100_cpython conda-forge -rcorrector 1.0.4 h2e03b76_2 bioconda -readline 8.2 h5eee18b_0 -semver 2.13.0 pyh9f0ad1d_0 conda-forge -setuptools 65.5.0 py37h06a4308_0 -spython 0.2.14 pyhd8ed1ab_0 conda-forge -sqlite 3.39.3 h5082296_0 -star 2.7.10b h9ee0642_0 bioconda -tk 8.6.12 h1ccaba5_0 -trim-galore 0.6.7 hdfd78af_0 bioconda -wheel 0.37.1 pyhd3eb1b0_0 -xopen 0.7.3 py_0 bioconda -xz 5.2.6 h5eee18b_0 -zlib 1.2.13 h166bdaf_4 conda-forge -``` -
-
- -`#DEKHO` -`#REMEMBER` Per Alison, "IP" = Nascent, "IN" = SteadyState -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" \ - || echo "cd'ing failed; check on this" - -Trinity_env -mamba install -c conda-forge parallel -mamba install -c bioconda samtools - -mkdir -p exp_preprocessing/{01_fastqc,02_trim_galore,03_fastqc,04a_star-genome-free,04b_star-genome-guided,05a_fastqc,05b_fastqc,06_bam-to-fastq,07_fastqc,08_rcorrector,09_fastqc} - - -# 1. FastQC ------------------------------------------------------------------ -if [[ -f submit-preprocessing-fastqc.sh ]]; then - rm submit-preprocessing-fastqc.sh -fi -cat << script > "./submit-preprocessing-fastqc.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=4 -#SBATCH --error=./exp_preprocessing/submit-preprocessing-fastqc.%J.err.txt -#SBATCH --output=./exp_preprocessing/submit-preprocessing-fastqc.%J.out.txt - -# submit-preprocessing-fastqc.sh -# KA -# $(date '+%Y-%m%d') - - -infile="\${1}" -outdir="\${2}" - -fastqc \\ - --threads "\${SLURM_CPUS_ON_NODE}" \\ - --outdir "\${outdir}" \\ - "\${infile}" -script -# vi submit-preprocessing-fastqc.sh - -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find "files_fastq_symlinks" \ - -type l \ - -name *_Q_IN_* \ - -print0 \ - | sort -z \ -) -for i in "${infiles[@]}"; do echo "${i}"; done -# files_fastq_symlinks/5781_Q_IN_merged_R1.fastq -# files_fastq_symlinks/5781_Q_IN_merged_R2.fastq -# files_fastq_symlinks/5782_Q_IN_merged_R1.fastq -# files_fastq_symlinks/5782_Q_IN_merged_R2.fastq - -# Submit jobs -for i in "${infiles[@]}"; do - echo "Working with ${i}..." - sbatch submit-preprocessing-fastqc.sh \ - "${i}" \ - "exp_preprocessing/01_fastqc/" - sleep 0.25 - echo "" -done - -unset infiles - - -# 2. Trim Galore ------------------------------------------------------------- -unset infiles -unset intermediate -unset duplicates -unset instrings - -typeset -a infiles -typeset -a intermediate -typeset -A duplicates -typeset -a instrings - -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find "files_fastq_symlinks" \ - -type l \ - -name *_Q_IN_* \ - -print0 \ - | sort -z \ -) -# for i in "${infiles[@]}"; do echo "${i}"; done -# # files_fastq_symlinks/5781_Q_IN_merged_R1.fastq -# # files_fastq_symlinks/5781_Q_IN_merged_R2.fastq -# # files_fastq_symlinks/5782_Q_IN_merged_R1.fastq -# # files_fastq_symlinks/5782_Q_IN_merged_R2.fastq - -for i in "${infiles[@]}"; do - intermediate+=( "${i%_R?.fastq}" ) -done -# for i in "${intermediate[@]}"; do echo "${i}"; done -# # files_fastq_symlinks/5781_Q_IN_merged -# # files_fastq_symlinks/5781_Q_IN_merged -# # files_fastq_symlinks/5782_Q_IN_merged -# # files_fastq_symlinks/5782_Q_IN_merged - -for i in "${intermediate[@]}"; do - if [[ -z "${duplicates[$i]}" ]]; then - instrings+=( "${i}" ) - fi - duplicates["${i}"]=1 -done - -# echo "Duplicates..." -# for i in "${!duplicates[@]}"; do echo "${i}"; done -# # files_fastq_symlinks/5782_Q_IN_merged -# # files_fastq_symlinks/5781_Q_IN_merged -# echo "" -# -# echo "Instrings..." -# for i in "${instrings[@]}"; do echo "${i}"; done -# # files_fastq_symlinks/5781_Q_IN_merged -# # files_fastq_symlinks/5782_Q_IN_merged -# echo "" - -if [[ -f submit-preprocessing-trim_galore.sh ]]; then - rm submit-preprocessing-trim_galore.sh -fi -cat << script > "./submit-preprocessing-trim_galore.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=1 -#SBATCH --error=./exp_preprocessing/submit-preprocessing-trim_galore.%J.err.txt -#SBATCH --output=./exp_preprocessing/submit-preprocessing-trim_galore.%J.out.txt - -# submit-preprocessing-trim_galore.sh -# KA -# $(date '+%Y-%m%d') - - -instring="\${1}" -outdir="\${2}" - -# Echo test -parallel --header : --colsep " " -k -j 1 echo \\ -"trim_galore \\ - --paired \\ - --retain_unpaired \\ - --phred33 \\ - --output_dir {outdir} \\ - --length 36 \\ - --quality 5 \\ - --stringency 1 \\ - -e 0.1 \\ - {sample}_R1.fastq \\ - {sample}_R2.fastq" \\ -::: sample "\${instring}" \\ -::: outdir "\${outdir}" - -# Run trim_galore -parallel --header : --colsep " " -k -j 1 \\ -"trim_galore \\ - --paired \\ - --retain_unpaired \\ - --phred33 \\ - --output_dir {outdir} \\ - --length 36 \\ - --quality 5 \\ - --stringency 1 \\ - -e 0.1 \\ - {sample}_R1.fastq \\ - {sample}_R2.fastq" \\ -::: sample "\${instring}" \\ -::: outdir "\${outdir}" - -echo "" -script -# vi submit-preprocessing-trim_galore.sh - -# Submit jobs -for i in "${instrings[@]}"; do - echo "Working with ${i}..." - sbatch submit-preprocessing-trim_galore.sh \ - "${i}" \ - "exp_preprocessing/02_trim_galore/" - sleep 0.25 - echo "" -done - -unset infiles -unset intermediate -unset duplicates -unset instrings -#TODO Compress .fastq output from trim_galore - - -# 3. FastQC ------------------------------------------------------------------ -unset infiles_trimmed -unset infiles_trimmed_unpaired - -typeset -a infiles_trimmed -typeset -a infiles_trimmed_unpaired - -while IFS=" " read -r -d $'\0'; do - infiles_trimmed+=( "${REPLY}" ) -done < <(\ - find "exp_preprocessing/02_trim_galore" \ - -type f \ - -name *val*.fq \ - -print0 \ - | sort -z \ -) -# for i in "${infiles_trimmed[@]}"; do echo "${i}"; done -# # exp_preprocessing/02_trim_galore/5781_Q_IN_merged_R1_val_1.fq -# # exp_preprocessing/02_trim_galore/5781_Q_IN_merged_R2_val_2.fq -# # exp_preprocessing/02_trim_galore/5782_Q_IN_merged_R1_val_1.fq -# # exp_preprocessing/02_trim_galore/5782_Q_IN_merged_R2_val_2.fq - -while IFS=" " read -r -d $'\0'; do - infiles_trimmed_unpaired+=( "${REPLY}" ) -done < <(\ - find "exp_preprocessing/02_trim_galore" \ - -type f \ - -name *unpaired*.fq \ - -print0 \ - | sort -z \ -) -for i in "${infiles_trimmed_unpaired[@]}"; do echo "${i}"; done - -for i in "${infiles_trimmed[@]}"; do - echo "Working with ${i}..." - sbatch submit-preprocessing-fastqc.sh \ - "${i}" \ - "exp_preprocessing/03_fastqc/" - sleep 0.25 - echo "" -done - -for i in "${infiles_trimmed_unpaired[@]}"; do - echo "Working with ${i}..." - sbatch submit-preprocessing-fastqc.sh \ - "${i}" \ - "exp_preprocessing/03_fastqc/" - sleep 0.25 - echo "" -done - -unset infiles_trimmed -unset infiles_trimmed_unpaired -``` - - -### Set up the STAR alignment steps and sub-steps (2022-1126) -```bash -# 4. STAR -------------------------------------------------------------------- -# Check on STAR -# which STAR -# # /home/kalavatt/miniconda3/envs/Trinity_env/bin/STAR - -# STAR --version -# # 2.7.10b - -# Check on samtools -# which samtools -# # /home/kalavatt/.local/bin/samtools - -# Why is not giving me the path to the conda/mamba installation? -#+ -#+ Go into .bashrc and comment out line 189: -#+ export PATH="$HOME/.local/bin:$PATH" -#+ -#+ Then, reinitialize the shell, reactivate Trinity_env, and see if this fixes -#+ things - -# which samtools -# # /home/kalavatt/miniconda3/envs/Trinity_env/bin/samtools - -# samtools --version -# # samtools 1.15 -# # Using htslib 1.14 -# # ... - -# So yes, that fixes things, but... -#REMEMBER 1/2 If/when returning to picardmetrics work, line 189 in .bashrc -#REMEMBER 2/2 regarding /home/kalavatt/.local/bin/samtools is commented out -``` - - -#### Set up `STAR` alignment for genome-free assembly (2022-1126) -*Edited and reran (portions) on 2022-1201; this was done to correct a bug that is described in `results/2022-1101/work-fix-errors.md`* -```bash -#!/bin/bash -#DONTRUN - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" || - echo "cd'ing failed; check on this" - - -# Get the files into an array ------------------------------------------------ -unset infiles_trimmed -typeset -a infiles_trimmed -while IFS=" " read -r -d $'\0'; do - infiles_trimmed+=( "${REPLY}" ) -done < <(\ - find "exp_preprocessing/02_trim_galore" \ - -type f \ - -name *val*.fq \ - -print0 \ - | sort -z \ -) -# for i in "${infiles_trimmed[@]}"; do echo "${i}"; done -# # exp_preprocessing/02_trim_galore/5781_Q_IN_merged_R1_val_1.fq -# # exp_preprocessing/02_trim_galore/5781_Q_IN_merged_R2_val_2.fq -# # exp_preprocessing/02_trim_galore/5782_Q_IN_merged_R1_val_1.fq -# # exp_preprocessing/02_trim_galore/5782_Q_IN_merged_R2_val_2.fq - -unset intermediate -typeset -a intermediate -for i in "${infiles_trimmed[@]}"; do - intermediate+=( "${i%_R?_val_?.fq}" ) -done -# for i in "${intermediate[@]}"; do echo "${i}"; done -# # exp_preprocessing/02_trim_galore/5781_Q_IN_merged -# # exp_preprocessing/02_trim_galore/5781_Q_IN_merged -# # exp_preprocessing/02_trim_galore/5782_Q_IN_merged -# # exp_preprocessing/02_trim_galore/5782_Q_IN_merged - -unset duplicates -typeset -A duplicates -unset instrings -typeset -a instrings -for i in "${intermediate[@]}"; do - if [[ -z "${duplicates[$i]}" ]]; then - instrings+=( "${i}" ) - fi - duplicates["${i}"]=1 -done - -# echo "Duplicates..." -# for i in "${!duplicates[@]}"; do echo "${i}"; done -# # exp_preprocessing/02_trim_galore/5781_Q_IN_merged -# # exp_preprocessing/02_trim_galore/5782_Q_IN_merged -# echo "" -# -# echo "Instrings..." -# for i in "${instrings[@]}"; do echo "${i}"; done -# # exp_preprocessing/02_trim_galore/5781_Q_IN_merged -# # exp_preprocessing/02_trim_galore/5782_Q_IN_merged -# echo "" - - -# 4a. Generate .bams for genome-free assembly -------------------------------- -genome_dir="${HOME}/genomes/combined_SC_KL_20S/STAR" -threads=8 - -if [[ -f submit-preprocessing-star-genome-free.sh ]]; then - rm submit-preprocessing-star-genome-free.sh -fi -cat << script > "./submit-preprocessing-star-genome-free.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./exp_preprocessing/submit-preprocessing-star-genome-free.%J.err.txt -#SBATCH --output=./exp_preprocessing/submit-preprocessing-star-genome-free.%J.out.txt - -# submit-preprocessing-star-genome-free.sh -# KA -# $(date '+%Y-%m%d') - - -read_1="\${1}" -read_2="\${2}" -prefix="\${3}" - -STAR \\ - --runMode alignReads \\ - --runThreadN "\${SLURM_CPUS_ON_NODE}" \\ - --outSAMtype BAM SortedByCoordinate \\ - --outSAMunmapped Within \\ - --outSAMattributes All \\ - --genomeDir "${genome_dir}" \\ - --readFilesIn "\${read_1}" "\${read_2}" \\ - --outFileNamePrefix "\${prefix}" \\ - --limitBAMsortRAM 4000000000 \\ - --outFilterMultimapNmax 1 \\ - --alignSJoverhangMin 8 \\ - --alignSJDBoverhangMin 1 \\ - --outFilterMismatchNmax 999 \\ - --alignIntronMin 4 \\ - --alignIntronMax 5000 \\ - --alignMatesGapMax 5000 -script -# vi submit-preprocessing-star-genome-free.sh - -for i in "${instrings[@]}"; do - echo "Working with ${i}..." - sbatch ./submit-preprocessing-star-genome-free.sh \ - "${i}_R1_val_1.fq" \ - "${i}_R2_val_2.fq" \ - "exp_preprocessing/04a_star-genome-free/$(basename "${i}")" - sleep 0.25 - echo "" -done - - -# Filter out unmapped reads -------------------------------------------------- -unset infiles_aligned -typeset -a infiles_aligned -while IFS=" " read -r -d $'\0'; do - infiles_aligned+=( "${REPLY}" ) -done < <(\ - find "exp_preprocessing/04a_star-genome-free" \ - -type f \ - -name *out.bam \ - -print0 \ - | sort -z \ -) -# for i in "${infiles_aligned[@]}"; do echo "${i}"; done -# # exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.bam -# # exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.bam - - -# First index the bam files ---------- -unset threads -typeset threads=2 - -if [[ -f submit-preprocessing-index-bam.sh ]]; then - rm submit-preprocessing-index-bam.sh -fi -cat << script > "./submit-preprocessing-index-bam.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./exp_preprocessing/submit-preprocessing-index-bam.%J.err.txt -#SBATCH --output=./exp_preprocessing/submit-preprocessing-index-bam.%J.out.txt - -# submit-preprocessing-index-bam.sh -# KA -# $(date '+%Y-%m%d') - -bam="\${1}" - -samtools index -@ ${threads} "\${bam}" -script -# vi submit-preprocessing-index-bam.sh - -for i in "${infiles_aligned[@]}"; do - echo "Working with ${i}..." - sbatch ./submit-preprocessing-index-bam.sh "${i}" - sleep 0.25 - echo "" -done - - -# Now, filter the bam files... ------- -#+ ...to exclude unmapped reads -threads=4 - -if [[ -f submit-preprocessing-exclude-bam-reads-unmapped.sh ]]; then - rm submit-preprocessing-exclude-bam-reads-unmapped.sh -fi -cat << script > "./submit-preprocessing-exclude-bam-reads-unmapped.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./exp_preprocessing/submit-preprocessing-exclude-bam-reads-unmapped.%J.err.txt -#SBATCH --output=./exp_preprocessing/submit-preprocessing-exclude-bam-reads-unmapped.%J.out.txt - -# submit-preprocessing-index-bam.sh -# KA -# $(date '+%Y-%m%d') - - -infile="\${1}" -outdir="\${2}" -outfile="\${3}" - -samtools view \\ - -@ "${threads}" \\ - -b -F 0x4 -F 0x8 \\ - "\${infile}" \\ - -o "\${outdir}/\${outfile}" -script -# vi submit-preprocessing-exclude-bam-reads-unmapped.sh - -for i in "${infiles_aligned[@]}"; do - echo "Working with ${i}..." - echo " - outdir is $(dirname "${i}")" - echo " - outfile is $(basename "${i}" ".bam").exclude-unmapped.bam" - echo " - threads is ${threads}" - - sbatch ./submit-preprocessing-exclude-bam-reads-unmapped.sh \ - "${i}" \ - "$(dirname "${i}")" \ - "$(basename "${i}" ".bam").exclude-unmapped.bam" - sleep 0.25 - echo "" -done - - -# Now, index the filtered bam files -- -threads=2 -for i in "${infiles_aligned[@]}"; do - echo "Working with ${i%.bam}.unmapped.bam..." - - sbatch ./submit-preprocessing-index-bam.sh \ - "${i%.bam}.exclude-unmapped.bam" - sleep 0.25 - echo "" -done -``` - - -#### Set up `STAR` alignment for genome-guided assembly (2022-1126) -*Edited and reran (portions) on 2022-1201-1202; this was done to correct a bug that is described in `results/2022-1101/work-fix-errors.md`* -```bash -#!/bin/bash -#DONTRUN - -# Alias to cd to 2022_transcriptome-construction directory -transcriptome -cd "results/2022-1101" || echo "cd'ing failed; check on this" - -Trinity_env - - -# Get the files of interest into an array ------------------------------------ -unset infiles_trimmed -unset intermediate -unset duplicates -unset instrings -typeset -a infiles_trimmed -typeset -a intermediate -typeset -A duplicates -typeset -a instrings -while IFS=" " read -r -d $'\0'; do - infiles_trimmed+=( "${REPLY}" ) -done < <(\ - find "exp_preprocessing/02_trim_galore" \ - -type f \ - -name *val*.fq \ - -print0 \ - | sort -z \ -) -# for i in "${infiles_trimmed[@]}"; do echo "${i}"; done - -for i in "${infiles_trimmed[@]}"; do - intermediate+=( "${i%_R?_val_?.fq}" ) -done -# for i in "${intermediate[@]}"; do echo "${i}"; done - -for i in "${intermediate[@]}"; do - if [[ -z "${duplicates[$i]}" ]]; then - instrings+=( "${i}" ) - fi - duplicates["${i}"]=1 -done - -# echo "Duplicates..." -# for i in "${!duplicates[@]}"; do echo "${i}"; done -# echo "" - -# echo "Instrings..." -# for i in "${instrings[@]}"; do echo "${i}"; done -# echo "" - - -# 4b. Generate .bams genome-guided assembly ---------------------------------- -genome_dir="${HOME}/genomes/combined_SC_KL_20S/STAR" -threads=8 - -if [[ -f submit-preprocessing-star-genome-guided.sh ]]; then - rm submit-preprocessing-star-genome-guided.sh -fi -cat << script > "./submit-preprocessing-star-genome-guided.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./exp_preprocessing/submit-preprocessing-star-genome-guided.%J.err.txt -#SBATCH --output=./exp_preprocessing/submit-preprocessing-star-genome-guided.%J.out.txt - -# submit-preprocessing-star-genome-guided.sh -# KA -# $(date '+%Y-%m%d') - - -read_1="\${1}" -read_2="\${2}" -prefix="\${3}" - -STAR \\ - --runMode alignReads \\ - --runThreadN "\${SLURM_CPUS_ON_NODE}" \\ - --outSAMtype BAM SortedByCoordinate \\ - --outSAMunmapped Within \\ - --outSAMattributes All \\ - --genomeDir "${genome_dir}" \\ - --readFilesIn "\${read_1}" "\${read_2}" \\ - --outFileNamePrefix "\${prefix}" \\ - --limitBAMsortRAM 4000000000 \\ - --outFilterMultimapNmax 1000 \\ - --winAnchorMultimapNmax 1000 \\ - --alignSJoverhangMin 8 \\ - --alignSJDBoverhangMin 1 \\ - --outFilterMismatchNmax 999 \\ - --outMultimapperOrder Random \\ - --alignEndsType EndToEnd \\ - --alignIntronMin 4 \\ - --alignIntronMax 5000 \\ - --alignMatesGapMax 5000 -script -# vi submit-preprocessing-star-genome-guided.sh - -for i in "${instrings[@]}"; do - echo "Working with ${i}..." - sbatch ./submit-preprocessing-star-genome-guided.sh \ - "${i}_R1_val_1.fq" \ - "${i}_R2_val_2.fq" \ - "exp_preprocessing/04a_star-genome-free/$(basename "${i}")" - sleep 0.25 - echo "" -done - - -# Filter out unmapped reads ---------- -unset infiles_aligned -typeset -a infiles_aligned -while IFS=" " read -r -d $'\0'; do - infiles_aligned+=( "${REPLY}" ) -done < <(\ - find "exp_preprocessing/04b_star-genome-guided" \ - -type f \ - -name *out.bam \ - -print0 \ - | sort -z \ -) -# for i in "${infiles_aligned[@]}"; do echo "${i}"; done - - -# First index the bam files ---------- -typeset threads=2 - -if [[ -f submit-preprocessing-index-bam.sh ]]; then - rm submit-preprocessing-index-bam.sh -fi -cat << script > "./submit-preprocessing-index-bam.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./exp_preprocessing/submit-preprocessing-index-bam.%J.err.txt -#SBATCH --output=./exp_preprocessing/submit-preprocessing-index-bam.%J.out.txt - -# submit-preprocessing-index-bam.sh -# KA -# $(date '+%Y-%m%d') - - -bam="\${1}" - -samtools index -@ ${threads} "\${bam}" -script -# vi submit-preprocessing-index-bam.sh - -for i in "${infiles_aligned[@]}"; do - echo "Working with ${i}..." - sbatch ./submit-preprocessing-index-bam.sh "${i}" - sleep 0.25 - echo "" -done - - -# Now, filter the bam files ---------- -#+ ...to exclude unmapped reads -threads=4 - -if [[ -f submit-preprocessing-exclude-bam-reads-unmapped.sh ]]; then - rm submit-preprocessing-exclude-bam-reads-unmapped.sh -fi -cat << script > "./submit-preprocessing-exclude-bam-reads-unmapped.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./exp_preprocessing/submit-preprocessing-exclude-bam-reads-unmapped.%J.err.txt -#SBATCH --output=./exp_preprocessing/submit-preprocessing-exclude-bam-reads-unmapped.%J.out.txt - -# submit-preprocessing-exclude-bam-reads-unmapped-bam.sh -# KA -# $(date '+%Y-%m%d') - -infile="\${1}" -outdir="\${2}" -outfile="\${3}" - - -samtools view \\ - -@ "${threads}" \\ - -b -F 0x4 -F 0x8 \\ - "\${infile}" \\ - -o "\${outdir}/\${outfile}" -script -# vi submit-preprocessing-exclude-bam-reads-unmapped.sh - -for i in "${infiles_aligned[@]}"; do - echo "Working with ${i}..." - echo " - outdir is $(dirname "${i}")" - echo " - outfile is $(basename "${i}" ".bam").exclude-unmapped.bam" - echo " - threads is ${threads}" - - sbatch ./submit-preprocessing-exclude-bam-reads-unmapped.sh \ - "${i}" \ - "$(dirname "${i}")" \ - "$(basename "${i}" ".bam").exclude-unmapped.bam" - sleep 0.25 - echo "" -done - - -# Now, index the filtered bam files -- -threads=2 - -for i in "${infiles_aligned[@]}"; do - echo "Working with ${i%.bam}.unmapped.bam..." - sbatch ./submit-preprocessing-index-bam.sh "${i%.bam}.exclude-unmapped.bam" - sleep 0.25 - echo "" -done - -# Now, index the filtered bam files -- -threads=2 -for i in "${infiles_aligned[@]}"; do - echo "Working with ${i%.bam}.unmapped.bam..." - - sbatch ./submit-preprocessing-index-bam.sh \ - "${i%.bam}.exclude-unmapped.bam" - sleep 0.25 - echo "" -done -``` - - -### Filter `.bam`s to retain only *S. cerevisiae* alignments (2022-1128) -*Edited and reran (portions) on 2022-1202; this was done to correct a bug that is described in `results/2022-1101/work-fix-errors.md`* -- `#DONE` Pick up with alignment for the two approaches, including `bam`-to-`fastq` conversion, then move on to implementing calls to `rCorrector` -- `#DONE` We completed the genome-free and genome-guided styles of `STAR` alignment; next step is to review my handwritten notes and then implement filtering-by-species scripts (genome-free, genome-guided) and `bam`-to-`fastq` scripts (genome-free)... and then what? -- `#DONE` Also, want to get some kind of rename/organization script in place for the `.bam`s output by `STAR` - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -# Alias: 'cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction"' -#+ is "transcriptome" -transcriptome -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction - -cd "./results/2022-1101" || echo "cd'ing failed; check on this" -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101 - -# Activate the conda environment for Trinity work -#+ Alias: 'conda activate Trinity_env' is 'Trinity_env' -Trinity_env - -# Alias: 'ls -lhaFG' is '.,' -., -# total 2.6M -# drwxrws--- 15 kalavatt 1.6K Nov 28 07:49 ./ -# drwxrws--- 7 kalavatt 191 Nov 28 07:30 ../ -# drwxrws--- 3 kalavatt 160 Nov 9 15:23 exp_alignment_Bowtie_2/ -# drwxrws--- 3 kalavatt 94 Nov 20 11:06 exp_alignment_STAR/ -# drwxrws--- 3 kalavatt 94 Nov 18 13:04 exp_alignment_STAR_multi-hit/ -# drwxrws--- 4 kalavatt 190 Nov 21 12:22 exp_alignment_STAR_tags/ -# drwxrws--- 2 kalavatt 1.1K Nov 7 15:27 exp_FastQC/ -# drwxrws--- 2 kalavatt 206 Nov 20 13:40 exp_intron-length/ -# drwxrws--- 6 kalavatt 2.6K Nov 26 10:21 exp_PASA_trial/ -# drwxrws--- 2 kalavatt 854 Nov 7 14:31 exp_picardmetrics/ -# drwxrws--- 7 kalavatt 5.0K Nov 28 07:49 exp_preprocessing/ -# drwxrws--- 3 kalavatt 317 Nov 7 14:44 exp_Trinity/ -# drwxrws--- 4 kalavatt 242 Nov 24 12:27 exp_Trinity_trial/ -# drwxrws--- 3 kalavatt 720 Nov 8 10:03 files_fastq_symlinks/ -# drwxrws--- 2 kalavatt 726 Nov 23 15:37 notebook/ -# -rw-rw---- 1 kalavatt 14K Nov 16 12:23 notes-Alison-files-locations.md -# -rw-rw---- 1 kalavatt 29K Nov 16 12:23 notes-Alison-papers.md -# -rw-rw---- 1 kalavatt 1.3K Nov 16 12:23 notes-Alison-RNA-seq-kits.md -# -rw-rw---- 1 kalavatt 8.0K Nov 25 10:11 notes-miscellaneous-links.md -# -rw-rw---- 1 kalavatt 5.7K Nov 16 12:23 notes-RNA-seq-spike-ins.md -# -rw-rw---- 1 kalavatt 35K Nov 18 11:33 notes-UMIs-etc.md -# -rw-rw---- 1 kalavatt 209K Nov 28 07:43 work-Trinity-2.md -# -rw-rw---- 1 kalavatt 617 Nov 8 14:43 submit-Bowtie-2.test-1.sh -# -rw-rw---- 1 kalavatt 642 Nov 8 16:16 submit-Bowtie-2.test-2.sh -# -rw-rw---- 1 kalavatt 300 Nov 7 14:58 submit-FastQC.sh -# -rw-rw---- 1 kalavatt 450 Nov 26 14:00 submit-preprocessing-exclude-bam-reads-unmapped.sh -# -rw-rw---- 1 kalavatt 330 Nov 26 10:55 submit-preprocessing-fastqc.sh -# -rw-rw---- 1 kalavatt 313 Nov 26 14:00 submit-preprocessing-index-bam.sh -# -rw-rw---- 1 kalavatt 892 Nov 26 12:21 submit-preprocessing-star-genome-free.sh -# -rw-rw---- 1 kalavatt 1002 Nov 26 13:52 submit-preprocessing-star-genome-guided.sh -# -rw-rw---- 1 kalavatt 917 Nov 26 11:00 submit-preprocessing-trim_galore.sh -# -rw-rw---- 1 kalavatt 871 Nov 18 14:52 submit-STAR-alignReads-multi-hit.sh -# -rw-rw---- 1 kalavatt 874 Nov 18 14:53 submit-STAR-alignReads.tags.multi-hit-mode.sh -# -rw-rw---- 1 kalavatt 1.4K Nov 18 14:38 submit-STAR-alignReads.tags.rna-star.sh -# -rw-rw---- 1 kalavatt 694 Nov 3 17:41 submit-Trinity.sh -# -rw-rw---- 1 kalavatt 1.2K Nov 22 14:54 submit-Trinity-trial-genome-free.sh -# -rw-rw---- 1 kalavatt 1.2K Nov 22 10:47 submit-Trinity-trial-genome-guided.sh -# -rw-rw---- 1 kalavatt 23K Nov 16 12:23 work-TPM-calculation.md -# -rw-rw---- 1 kalavatt 310K Nov 26 10:41 work-Trinity.md - - - -# Create an array for .bam files of interest --------------------------------- -# Set up a function for quickly checking the contents of arrays -echoTest() { for i in "${@:-*}"; do echo "${i}"; done; } - - -unset infiles_mapped -while IFS=" " read -r -d $'\0'; do - infiles_mapped+=( "${REPLY}" ) -done < <(\ - find exp_preprocessing/04?_star-* \ - -type f \ - -name *out.exclude-unmapped.bam \ - -print0 \ - | sort -z \ -) -echoTest "${infiles_mapped[@]}" -# exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.bam -# exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.bam -# exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.bam -# exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.bam -#NOTE 2022-1202 1/N: Looking at what was printed to terminal on 2022-1128, it's -#NOTE 2022-1202 2/N: clear that I just missed that we weren't working with -#NOTE 2022-1202 3/N: unmapped-excluded .bams - -# 2022-1202 results of echoTest -# exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam - - -# # Set up function to split .bam files by species, etc. --------------------- -# split_with_samtools() { -# what=""" -# split_with_samtools() -# --------------------- -# Use samtools to filter a bam file such that it contains only chromosome(s) -# specified with ${0} argument -s -# -# :param 1: threads = 1> -# :param 2: bam infile, including path -# :param 3: chromosomes to retain -# :param 4: bam outfile, including path -# :return: param 2 filtered to include only param 3 in param 4 -# """ -# samtools view -@ "${1}" -h "${2}" ${3} -o "${4}" -# } -# -# -# # Note that... -# #+ ...names of chromosomes in .bam infiles must be in the following format: -# #+ - S. cerevisiae (SC) -# #+ - I -# #+ - II -# #+ - III -# #+ - IV -# #+ - V -# #+ - VI -# #+ - VII -# #+ - VIII -# #+ - IX -# #+ - X -# #+ - XI -# #+ - XII -# #+ - XIII -# #+ - XIV -# #+ - XV -# #+ - XVI -# #+ - Mito -# #+ -# #+ - K. lactis (KL) -# #+ - A -# #+ - B -# #+ - C -# #+ - D -# #+ - E -# #+ -# #+ - 20 S narnavirus -# #+ - 20S -# #+ -# #+ (They're in that format already.) -# -# # Finally, split .bam files by species, etc. -# threads=1 -# chr="I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" -# split="sc_all" -# -# for i in "${infiles_mapped[@]}"; do -# echo "Working with ${i}..." -# split_with_samtools \ -# "${threads}" \ -# "${i}" \ -# "${chr}" \ -# "${i%.bam}.${split}.bam" -# echo "" -# done -# -# -# # Get split_with_samtools into jobs that are submitted to SLURM -------------- -# # First, remove the outfiles from the above for loop -# for i in "${infiles_mapped[@]}"; do -# ., "${i%.bam}.${split}.bam" -# done -# # -rw-rw---- 1 kalavatt 525M Nov 28 08:51 exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# # -rw-rw---- 1 kalavatt 435M Nov 28 08:52 exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# # -rw-rw---- 1 kalavatt 1.2G Nov 28 08:53 exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# # -rw-rw---- 1 kalavatt 878M Nov 28 08:54 exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -# for i in "${infiles_mapped[@]}"; do -# rm "${i%.bam}.${split}.bam" -# done -# -# for i in "${infiles_mapped[@]}"; do -# ., "${i%.bam}.${split}.bam" -# done -# # ls: cannot access 'exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam': No such file or directory -# # ls: cannot access 'exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam': No such file or directory -# # ls: cannot access 'exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam': No such file or directory -# # ls: cannot access 'exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam': No such file or directory - - -# Prepare the job-submission script for splitting .bam files by species ------ -# 2022-1202: Need to do this again with the *.exclude-unmapped.bam files -threads=4 - -if [[ -f submit-preprocessing-split-bam-species.sh ]]; then - rm submit-preprocessing-split-bam-species.sh -fi -cat << script > "./submit-preprocessing-split-bam-species.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./exp_preprocessing/submit-preprocessing-split-bam-species.%J.err.txt -#SBATCH --output=./exp_preprocessing/submit-preprocessing-split-bam-species.%J.out.txt - -# submit-preprocessing-split-bam-species.sh -# KA -# $(date '+%Y-%m%d') - - -split_with_samtools() { - what=""" - split_with_samtools() - --------------------- - Use samtools to filter a bam file such that it contains only specified - chromosome(s) - - :param 1: threads = 1> - :param 2: bam infile, including path - :param 3: chromosomes to retain - :param 4: bam outfile, including path - :return: param 2 filtered to include only param 3 in param 4 - """ - samtools view -@ "\${1}" -h "\${2}" \${3} -o "\${4}" -} - - -infile="\${1}" -outfile="\${2}" -chromosomes="\${3}" -threads="\${4}" - -split_with_samtools \\ - "\${threads}" \\ - "\${infile}" \\ - "\${chromosomes}" \\ - "\${outfile}" -script -# vi submit-preprocessing-split-bam-species.sh - - -# Submit jobs to split .bam files by species --------------------------------- -chr="I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" -split="sc_all" -for i in "${infiles_mapped[@]}"; do - echo "Submitting job for ${i}..." - echo " - chromosomes to retain are ${chr}" - echo " - outfile is ${i%.bam}.${split}.bam" - echo " - running samtools with ${threads} threads" - echo "Submission:" - - echo -e "sbatch ./submit-preprocessing-split-bam-species.sh \\ \n\ - \"${i}\" \\ \n\ - \"${i%.bam}.${split}.bam\" \\ \n\ - \"${chr}\" \\ \n\ - \"${threads}\"" - - sbatch ./submit-preprocessing-split-bam-species.sh \ - "${i}" \ - "${i%.bam}.${split}.bam" \ - "${chr}" \ - "${threads}" - sleep 0.25 - echo "" -done - - -# Submit jobs to index split-by-species .bam files -------------------------- -for i in "${infiles_mapped[@]}"; do - echo "Working with ${i%.bam}.${split}.bam..." - sbatch ./submit-preprocessing-index-bam.sh "${i%.bam}.${split}.bam" - sleep 0.25 - echo "" -done -``` - -
-sbatch ./submit-preprocessing-split-bam-species.sh messages printed to terminal: - -2022-1128 -```txt -Submitting job for exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.bam... - - chromosomes to retain are I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito - - outfile is exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam - - running samtools with 4 threads -Submission: -sbatch ./submit-preprocessing-split-bam-species.sh \ - "exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.bam" \ - "exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam" \ - "I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" \ - "4" -Submitted batch job 4714601 - -Submitting job for exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.bam... - - chromosomes to retain are I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito - - outfile is exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam - - running samtools with 4 threads -Submission: -sbatch ./submit-preprocessing-split-bam-species.sh \ - "exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.bam" \ - "exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam" \ - "I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" \ - "4" -Submitted batch job 4714602 - -Submitting job for exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.bam... - - chromosomes to retain are I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito - - outfile is exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam - - running samtools with 4 threads -Submission: -sbatch ./submit-preprocessing-split-bam-species.sh \ - "exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.bam" \ - "exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam" \ - "I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" \ - "4" -Submitted batch job 4714603 - -Submitting job for exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.bam... - - chromosomes to retain are I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito - - outfile is exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam - - running samtools with 4 threads -Submission: -sbatch ./submit-preprocessing-split-bam-species.sh \ - "exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.bam" \ - "exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam" \ - "I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" \ - "4" -Submitted batch job 4714604 -``` - -2022-1202 -```txt -Submitting job for exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam... - - chromosomes to retain are I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito - - outfile is exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - - running samtools with 4 threads -Submission: -sbatch ./submit-preprocessing-split-bam-species.sh \ - "exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam" \ - "exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam" \ - "I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" \ - "4" -Submitted batch job 5144927 - -Submitting job for exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam... - - chromosomes to retain are I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito - - outfile is exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - - running samtools with 4 threads -Submission: -sbatch ./submit-preprocessing-split-bam-species.sh \ - "exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam" \ - "exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam" \ - "I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" \ - "4" -Submitted batch job 5144928 - -Submitting job for exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam... - - chromosomes to retain are I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito - - outfile is exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - - running samtools with 4 threads -Submission: -sbatch ./submit-preprocessing-split-bam-species.sh \ - "exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam" \ - "exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam" \ - "I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" \ - "4" -Submitted batch job 5144929 - -Submitting job for exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam... - - chromosomes to retain are I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito - - outfile is exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - - running samtools with 4 threads -Submission: -sbatch ./submit-preprocessing-split-bam-species.sh \ - "exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam" \ - "exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam" \ - "I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" \ - "4" -Submitted batch job 5144930 -``` -
-
- -The jobs completed successfully - - -### Perform another quality check with `FastQC` (2022-1128) -*Edited and reran (portions) on 2022-1202; this was done to correct a bug that is described in `results/2022-1101/work-fix-errors.md`* -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101 - -., -# Looks fine and submit-preprocessing-fastqc.sh is present - -for i in "${infiles_mapped[@]}"; do - ., "${i%.bam}.${split}.bam" -done -# -rw-rw---- 1 kalavatt 525M Nov 28 09:20 exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 435M Nov 28 09:20 exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 1.2G Nov 28 09:20 exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 878M Nov 28 09:20 exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam - -# 2022-1202 -# -rw-rw---- 1 kalavatt 525M Dec 2 08:29 exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam -# -rw-rw---- 1 kalavatt 435M Dec 2 08:29 exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam -# -rw-rw---- 1 kalavatt 1.2G Dec 2 08:30 exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam -# -rw-rw---- 1 kalavatt 878M Dec 2 08:30 exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - -# See answer #1 here: -#+ stackoverflow.com/questions/13648410/how-can-i-get-unique-values-from-an-array-in-bash -#+ (...which is way more efficient that what I did above) -unset infiles_mapped_bases -typeset -a infiles_mapped_bases -for i in "${infiles_mapped[@]}"; do - infiles_mapped_bases+=( "$(basename "${i%.bam}.${split}.bam")" ) -done -echo "w/duplicates (in the array)..." -echoTest "${infiles_mapped_bases[@]}" -# 2022-1202 -# 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam -# 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam -# 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam -# 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - -IFS=" " read -r -a infiles_mapped_bases \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${infiles_mapped_bases[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -echo "w/o duplicates (in the array)..." -echoTest "${infiles_mapped_bases[@]}" && echo "" -# 2022-1202 -# 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam -# 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - -unset infiles_mapped_dirs -typeset -a infiles_mapped_dirs -for i in "${infiles_mapped[@]}"; do - infiles_mapped_dirs+=( "$(dirname "${i%.bam}.${split}.bam")" ) -done -echo "w/duplicates (in the array)..." -echoTest "${infiles_mapped_dirs[@]}" -# 2022-1202 -# exp_preprocessing/04a_star-genome-free -# exp_preprocessing/04a_star-genome-free -# exp_preprocessing/04b_star-genome-guided -# exp_preprocessing/04b_star-genome-guided - -IFS=" " read -r -a infiles_mapped_dirs \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${infiles_mapped_dirs[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -echo "w/o duplicates (in the array)..." -echoTest "${infiles_mapped_dirs[@]}" && echo "" -# 2022-1202 -# exp_preprocessing/04a_star-genome-free -# exp_preprocessing/04b_star-genome-guided - -for i in "${infiles_mapped_dirs[@]}"; do - # i="${infiles_mapped_dirs[0]}" - step_no="$(\ - echo "${i}" \ - | awk -F _ '{ print $2 }' \ - | awk -F / '{ print $2 }'\ - )" - if [[ "${step_no}" == "04a" ]]; then - for j in "${infiles_mapped_bases[@]}"; do - outdir="exp_preprocessing/05a_fastqc" - echo "Working with ${i}..." - echo " - infile: ${i}/${j}" - echo " - outdir: ${outdir}" - echo "" - - echo -e "sbatch submit-preprocessing-fastqc.sh \\ \n\ - \"${i}/${j}\" \\ \n\ - \"${outdir}\"" - - sbatch submit-preprocessing-fastqc.sh \ - "${i}/${j}" \ - "${outdir}" - - sleep 0.25 - echo "" && echo "" - done - elif [[ "${step_no}" == "04b" ]]; then - for j in "${infiles_mapped_bases[@]}"; do - outdir="exp_preprocessing/05b_fastqc" - echo "Working with ${i}..." - echo " - infile: ${i}/${j}" - echo " - outdir: ${outdir}" - echo "" - - echo -e "sbatch submit-preprocessing-fastqc.sh \\ \n\ - \"${i}/${j}\" \\ \n\ - \"${outdir}\"" - - sbatch submit-preprocessing-fastqc.sh \ - "${i}/${j}" \ - "${outdir}" - - sleep 0.25 - echo "" && echo "" - done - else - echo "Exiting: Problem encountered processing in- and outfiles" - # exit 1 - fi -done -``` - -
-sbatch ./submit-preprocessing-fastqc.sh, messages printed to terminal: - -2022-1128 -```txt -Working with exp_preprocessing/04a_star-genome-free... - - infile: exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam - - outdir: exp_preprocessing/05a_fastqc - -sbatch submit-preprocessing-fastqc.sh \ - "exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam" \ - "exp_preprocessing/05a_fastqc" -Submitted batch job 4715418 - - -Working with exp_preprocessing/04a_star-genome-free... - - infile: exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam - - outdir: exp_preprocessing/05a_fastqc - -sbatch submit-preprocessing-fastqc.sh \ - "exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam" \ - "exp_preprocessing/05a_fastqc" -Submitted batch job 4715419 - - -Working with exp_preprocessing/04b_star-genome-guided... - - infile: exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam - - outdir: exp_preprocessing/05b_fastqc - -sbatch submit-preprocessing-fastqc.sh \ - "exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam" \ - "exp_preprocessing/05b_fastqc" -Submitted batch job 4715420 - - -Working with exp_preprocessing/04b_star-genome-guided... - - infile: exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam - - outdir: exp_preprocessing/05b_fastqc - -sbatch submit-preprocessing-fastqc.sh \ - "exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam" \ - "exp_preprocessing/05b_fastqc" -Submitted batch job 4715421 -``` - -2022-1202 -```txt -Working with exp_preprocessing/04a_star-genome-free... - - infile: exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - - outdir: exp_preprocessing/05a_fastqc - -sbatch submit-preprocessing-fastqc.sh \ - "exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam" \ - "exp_preprocessing/05a_fastqc" -Submitted batch job 5144942 - - -Working with exp_preprocessing/04a_star-genome-free... - - infile: exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - - outdir: exp_preprocessing/05a_fastqc - -sbatch submit-preprocessing-fastqc.sh \ - "exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam" \ - "exp_preprocessing/05a_fastqc" -Submitted batch job 5144943 - - -Working with exp_preprocessing/04b_star-genome-guided... - - infile: exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - - outdir: exp_preprocessing/05b_fastqc - -sbatch submit-preprocessing-fastqc.sh \ - "exp_preprocessing/04b_star-genome-guided/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam" \ - "exp_preprocessing/05b_fastqc" -Submitted batch job 5144944 - - -Working with exp_preprocessing/04b_star-genome-guided... - - infile: exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - - outdir: exp_preprocessing/05b_fastqc - -sbatch submit-preprocessing-fastqc.sh \ - "exp_preprocessing/04b_star-genome-guided/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam" \ - "exp_preprocessing/05b_fastqc" -Submitted batch job 5144945 -``` -
-
- -The jobs completed successfully - - -### Convert the species-filtered `.bam`s from genome-free alignment to `.fastq`s -*Edited and reran (portions) on 2022-1202; this was done to correct a bug that is described in `results/2022-1101/work-fix-errors.md`* -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Check where we are -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101 - -# Check what's in the working directory -., -# Looks fine and submit-preprocessing-fastqc.sh is present - -# Check that we're using samtools from Trinity_env -which samtools -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/samtools - - -# Make an array for files of interest ---------------------------------------- -# Remember, split="sc_all", assigned above -unset bams_filtered -typeset -a bams_filtered -while IFS=" " read -r -d $'\0'; do - bams_filtered+=( "${REPLY}" ) -done < <(\ - find "exp_preprocessing/04a_star-genome-free" \ - -type f \ - -name *.exclude-unmapped.${split}.bam \ - -print0 \ - | sort -z \ -) -echoTest "${bams_filtered[@]}" -# 2022-1202 -# exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam -# exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - - -# Prep the SLURM script for converting filtered .bams to .fastqs ------------- -threads=4 - -if [[ -f submit-preprocessing-convert-bam-fastq.sh ]]; then - rm submit-preprocessing-convert-bam-fastq.sh -fi -cat << script > "./submit-preprocessing-convert-bam-fastq.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./exp_preprocessing/submit-preprocessing-convert-bam-fastq.%J.err.txt -#SBATCH --output=./exp_preprocessing/submit-preprocessing-convert-bam-fastq.%J.out.txt - -# submit-preprocessing-convert-bam-fastq.sh -# KA -# $(date '+%Y-%m%d') - - -infile="\${1}" -outprefix="\${2}" -threads="\${3}" - -if [[ ! -f "\${infile}.bai" ]]; then - echo "Indexing \${infile}" - samtools index -@ "\${threads}" "\${infile}" -fi - -if [[ ! -f "\${infile%.bam}.sort-n.bam" ]]; then - echo "QNAME-sorting \${infile}" - samtools sort -n -@ "\${threads}" "\${infile}" \\ - > "\${infile%.bam}.sort-n.bam" -fi - -echo "Converting QNAME-sorted bam to fastq files" -if [[ -f "\${infile%.bam}.sort-n.bam" ]]; then - samtools fastq \\ - -@ "\${threads}" \\ - -1 "\${outprefix}.1.fq.gz" \\ - -2 "\${outprefix}.2.fq.gz" \\ - "\${infile%.bam}.sort-n.bam" -else - echo "\${infile%.bam}.sort-n.bam is NOT present; check on this..." -fi -script -# vi submit-preprocessing-convert-bam-fastq.sh - - -# Submit jobs for converting filtered .bams to .fastqs ----------------------- -for i in "${bams_filtered[@]}"; do - # i="${bams_filtered[0]}" - step_no="$(\ - echo "${i}" \ - | awk -F _ '{ print $2 }' \ - | awk -F / '{ print $2 }'\ - )" - if [[ "${step_no}" == "04a" ]]; then - prefix="$(dirname $(dirname "${i}"))" - suffix="06_bam-to-fastq" - - echo "Submitting job for ${i}..." - echo " - inpath: $(dirname "${i}")" - echo " - infile: ${i}" - echo " - outpath: ${prefix}/${suffix}" - echo " - outprefix: ${prefix}/${suffix}/$(basename "${i%.bam}")" - echo "Submission:" - - echo -e "sbatch ./submit-preprocessing-convert-bam-fastq.sh \\ \n\ - \"${i}\" \\ \n\ - \"${prefix}/${suffix}/$(basename "${i%.bam}")\" \\ \n\ - \"${threads}\"" - - sbatch ./submit-preprocessing-convert-bam-fastq.sh \ - "${i}" \ - "${prefix}/${suffix}/$(basename "${i%.bam}")" \ - "${threads}" - - sleep 0.25 - echo "" - else - echo "Exiting: Problem encountered processing in- and outfiles" - # exit 1 - fi -done -``` - -
-Jobs submission details printed to terminal - -2022-1202 -```txt -Submitting job for exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam... - - inpath: exp_preprocessing/04a_star-genome-free - - infile: exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - - outpath: exp_preprocessing/06_bam-to-fastq - - outprefix: exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all -Submission: -sbatch ./submit-preprocessing-convert-bam-fastq.sh \ - "exp_preprocessing/04a_star-genome-free/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam" \ - "exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all" \ - "4" -Submitted batch job 5145157 - -Submitting job for exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam... - - inpath: exp_preprocessing/04a_star-genome-free - - infile: exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam - - outpath: exp_preprocessing/06_bam-to-fastq - - outprefix: exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all -Submission: -sbatch ./submit-preprocessing-convert-bam-fastq.sh \ - "exp_preprocessing/04a_star-genome-free/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam" \ - "exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all" \ - "4" -Submitted batch job 5145158 -``` -
-
- - -### Perform a `FastQC` quality check for the new `.fastq` files (2022-1128) -*Edited and reran (portions) on 2022-1202; this was done to correct a bug that is described in `results/2022-1101/work-fix-errors.md`* -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101 - -., -# Looks fine and submit-preprocessing-fastqc.sh is present - - -# Make an array for files of interest ---------------------------------------- -unset fastqs_from_bams -typeset -a fastqs_from_bams -while IFS=" " read -r -d $'\0'; do - fastqs_from_bams+=( "${REPLY}" ) -done < <(\ - find "exp_preprocessing/06_bam-to-fastq" \ - -type f \ - -name *.exclude-unmapped.*.gz \ - -print0 \ - | sort -z \ -) -echoTest "${fastqs_from_bams[@]}" -# 2022-1202 -# exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.fq.gz -# exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.fq.gz -# exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.fq.gz -# exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.fq.gz - - -# Submit jobs for QC of .bams converted to .fastqs --------------------------- -for i in "${fastqs_from_bams[@]}"; do - outdir="exp_preprocessing/07_fastqc" - echo "Working with ${i}..." - echo " - infile: ${i}" - echo " - outdir: ${outdir}" - echo "" - - echo -e "sbatch submit-preprocessing-fastqc.sh \\ \n\ - \"${i}\" \\ \n\ - \"${outdir}\"" - - sbatch submit-preprocessing-fastqc.sh \ - "${i}" \ - "${outdir}" - - sleep 0.25 - echo "" && echo "" -done -``` - -
-Details of job submission printed to terminal: - -```txt -Working with exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.fq.gz... - - infile: exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.fq.gz - - outdir: exp_preprocessing/07_fastqc - -sbatch submit-preprocessing-fastqc.sh \ - "exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.fq.gz" \ - "exp_preprocessing/07_fastqc" -Submitted batch job 5145299 - - -Working with exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.fq.gz... - - infile: exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.fq.gz - - outdir: exp_preprocessing/07_fastqc - -sbatch submit-preprocessing-fastqc.sh \ - "exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.fq.gz" \ - "exp_preprocessing/07_fastqc" -Submitted batch job 5145300 - - -Working with exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.fq.gz... - - infile: exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.fq.gz - - outdir: exp_preprocessing/07_fastqc - -sbatch submit-preprocessing-fastqc.sh \ - "exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.fq.gz" \ - "exp_preprocessing/07_fastqc" -Submitted batch job 5145301 - - -Working with exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.fq.gz... - - infile: exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.fq.gz - - outdir: exp_preprocessing/07_fastqc - -sbatch submit-preprocessing-fastqc.sh \ - "exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.fq.gz" \ - "exp_preprocessing/07_fastqc" -Submitted batch job 5145302 -``` -
-
- - -### Remove erroneous k-mers from reads with `rCorrector` and "correct" the outfiles -*Edited and reran (portions) on 2022-1202; this was done to correct a bug that is described in `results/2022-1101/work-fix-errors.md`* - -#### Remove erroneous k-mers from paired-end reads with `rCorrector` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101 - -., -# Looks fine and submit-preprocessing-fastqc.sh is present - -# Remember that we're still in Trinity_env; check that we have rcorrector installed -which rcorrector -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/rcorrector - - -# Make an array for files of interest ---------------------------------------- -unset fastqs_from_bams -typeset -a fastqs_from_bams -while IFS=" " read -r -d $'\0'; do - fastqs_from_bams+=( "${REPLY%.?.fq.gz}" ) -done < <(\ - find "exp_preprocessing/06_bam-to-fastq" \ - -type f \ - -name *.gz \ - -print0 \ - | sort -z \ -) -echo "w/duplicates (in the array)..." -echoTest "${fastqs_from_bams[@]}" - -IFS=" " read -r -a fastqs_from_bams \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${fastqs_from_bams[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -echo "w/o duplicates (in the array)..." -echoTest "${fastqs_from_bams[@]}" && echo "" - - -# Perform a test run of rcorrector ------------------------------------------- -threads=1 -i="${fastqs_from_bams[0]}" - -run_rcorrector.pl -# Usage: perl ./run_rcorrector.pl [OPTIONS] -# OPTIONS: -# Required parameters: -# -s seq_files: comma separated files for single-end data sets -# -1 seq_files_left: comma separated files for the first mate in the paried-end data sets -# -2 seq_files_right: comma separated files for the second mate in the paired-end data sets -# -i seq_files_interleaved: comma sperated files for interleaved paired-end data sets -# Other parameters: -# -k kmer_length (<=32, default: 23) -# -od output_file_directory (default: ./) -# -t number_of_threads (default: 1) -# -maxcorK INT: the maximum number of correction within k-bp window (default: 4) -# -wk FLOAT: the proportion of kmers that are used to estimate weak kmer count threshold, lower for more divergent genome (default: 0.95) -# -ek expected_number_of_kmers: does not affect the correctness of program but affect the memory usage (default: 100000000) -# -stdout: output the corrected reads to stdout (default: not used) -# -verbose: output some correction information to stdout (default: not used) -# -stage INT: start from which stage (default: 0) -# 0-start from begining(storing kmers in bloom filter); -# 1-start from count kmers showed up in bloom filter; -# 2-start from dumping kmer counts into a jf_dump file; -# 3-start from error correction. - -run_rcorrector.pl \ - -t "${threads}" \ - -1 "${i}.1.fq.gz" \ - -2 "${i}.2.fq.gz" \ - -od "exp_preprocessing/08_rcorrector" -``` - -
-Call to run_rcorrector.pl, messages printed to terminal: - -```txt -Put the kmers into bloom filter -jellyfish bc -m 23 -s 100000000 -C -t 1 -o tmp_39ba89fb652788a14b68b806e39757da.bc <(gzip -cd exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.fq.gz) <(gzip -cd exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.fq.gz) -Count the kmers in the bloom filter -jellyfish count -m 23 -s 100000 -C -t 1 --bc tmp_39ba89fb652788a14b68b806e39757da.bc -o tmp_39ba89fb652788a14b68b806e39757da.mer_counts <(gzip -cd exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.fq.gz) <(gzip -cd exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.fq.gz) -Dump the kmers -jellyfish dump -L 2 tmp_39ba89fb652788a14b68b806e39757da.mer_counts > tmp_39ba89fb652788a14b68b806e39757da.jf_dump -Error correction -/home/kalavatt/miniconda3/envs/Trinity_env/bin/rcorrector -t 1 -od exp_preprocessing/08_rcorrector -p exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.fq.gz exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.fq.gz -c tmp_39ba89fb652788a14b68b806e39757da.jf_dump -Stored 13606816 kmers -Weak kmer threshold rate: 0.024658 (estimated from 0.950/1 of the chosen kmers) -Bad quality threshold is '@' -Processed 15069524 reads - Corrected 5442342 bases. -``` -
-
- -The command completed successfully; however, it's quite slow using only one thread -`#DONE` Formal `run_rcorrector.pl` job submissions to `SLURM` - - -#### Discard `rcorrector`-processed read pairs for which one read is deemed unfixable -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101 - -., -# Looks fine and submit-preprocessing-fastqc.sh is present - -which python -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/python - -python --version -# Python 3.7.15 - - -# Generate the requisite script for processing rcorrector-treated reads ------ -# The following script is taken from -#+ github.com/harvardinformatics/TranscriptomeAssemblyTools/blob/master/FilterUncorrectabledPEfastq.py -#+ -#+ ...and is used following the guidelines (specifically steps 3 and 4) here: -#+ informatics.fas.harvard.edu/best-practices-for-de-novo-transcriptome-assembly-with-trinity.html -cat << script > "./submit-preprocessing-filter-uncorrectable-fastq.py" -""" -author: adam h freedman -afreedman405 at gmail.com -data: Fri Aug 26 10:55:18 EDT 2016 - -This script takes as an input Rcorrector error corrected Illumina paired-reads -in fastq format and: - -1. Removes any reads that Rcorrector indentifes as containing an error, -but can't be corrected, typically low complexity sequences. For these, -the header contains 'unfixable'. - -2. Strips the ' cor' from headers of reads that Rcorrector fixed, to avoid -issues created by certain header formats for downstream tools. - -3. Write a log with counts of (a) read pairs that were removed because one end -was unfixable, (b) corrected left and right reads, (c) total number of -read pairs containing at least one corrected read. - -Currently, this script only handles paired-end data, and handle either unzipped -or gzipped files on the fly, so long as the gzipped files end with 'gz'. -""" - -import sys -import gzip -from itertools import izip,izip_longest -import argparse -from os.path import basename - -def get_input_streams(r1file,r2file): - if r1file[-2:]=='gz': - r1handle=gzip.open(r1file,'rb') - r2handle=gzip.open(r2file,'rb') - else: - r1handle=open(r1file,'r') - r2handle=open(r2file,'r') - - return r1handle,r2handle - - -def grouper(iterable, n, fillvalue=None): - "Collect data into fixed-length chunks or blocks" - # grouper('ABCDEFG', 3, 'x') --> ABC DEF Gxx - args = [iter(iterable)] * n - return izip_longest(fillvalue=fillvalue, *args) - - -if __name__=="__main__": - parser = argparse.ArgumentParser( - description="options for filtering and logging rCorrector fastq outputs" - ) - parser.add_argument( - '-1','--left_reads',dest='leftreads',type=str,help='R1 fastq file' - ) - parser.add_argument( - '-2','--right_reads',dest='rightreads',type=str,help='R2 fastq file' - ) - parser.add_argument( - '-s','--sample_id',dest='id',type=str,help='sample name to write to log file' - ) - opts = parser.parse_args() - - r1out=open('unfixrm_%s' % basename(opts.leftreads).replace('.gz',''),'w') - r2out=open('unfixrm_%s' % basename(opts.rightreads).replace('.gz','') ,'w') - - r1_cor_count=0 - r2_cor_count=0 - pair_cor_count=0 - unfix_r1_count=0 - unfix_r2_count=0 - unfix_both_count=0 - - r1_stream,r2_stream=get_input_streams(opts.leftreads,opts.rightreads) - - with r1_stream as f1, r2_stream as f2: - R1=grouper(f1,4) - R2=grouper(f2,4) - counter=0 - for entry in R1: - counter+=1 - if counter%100000==0: - print "%s reads processed" % counter - - head1,seq1,placeholder1,qual1=[i.strip() for i in entry] - head2,seq2,placeholder2,qual2=[j.strip() for j in R2.next()] - - if 'unfixable' in head1 and 'unfixable' not in head2: - unfix_r1_count+=1 - elif 'unfixable' in head2 and 'unfixable' not in head1: - unfix_r2_count+=1 - elif 'unfixable' in head1 and 'unfixable' in head2: - unfix_both_count+=1 - else: - if 'cor' in head1: - r1_cor_count+=1 - if 'cor' in head2: - r2_cor_count+=1 - if 'cor' in head1 or 'cor' in head2: - pair_cor_count+=1 - - head1=head1.split('l:')[0][:-1] - head2=head2.split('l:')[0][:-1] - r1out.write('%s\n' % '\n'.join([head1,seq1,placeholder1,qual1])) - r2out.write('%s\n' % '\n'.join([head2,seq2,placeholder2,qual2])) - - total_unfixable = unfix_r1_count+unfix_r2_count+unfix_both_count - total_retained = counter - total_unfixable - - unfix_log=open('rmunfixable_%s.log' % opts.id,'w') - unfix_log.write('total PE reads:%s\nremoved PE reads:%s\nretained PE reads:%s\nR1 corrected:%s\nR2 corrected:%s\npairs corrected:%s\nR1 unfixable:%s\nR2 unfixable:%s\nboth reads unfixable:%s\n' % (counter,total_unfixable,total_retained,r1_cor_count,r2_cor_count,pair_cor_count,unfix_r1_count,unfix_r2_count,unfix_both_count)) - - r1out.close() - r2out.close() - unfix_log.close() -script - - -# Make an array for files of interest ---------------------------------------- -unset fastqs_rcorrected -typeset -a fastqs_rcorrected -while IFS=" " read -r -d $'\0'; do - fastqs_rcorrected+=( "${REPLY%.?.cor.fq.gz}" ) -done < <(\ - find "exp_preprocessing/08_rcorrector" \ - -type f \ - -name *.gz \ - -print0 \ - | sort -z \ -) -echo "w/duplicates (in the array)..." -echoTest "${fastqs_rcorrected[@]}" - -IFS=" " read -r -a fastqs_rcorrected \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${fastqs_rcorrected[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -echo "w/o duplicates (in the array)..." -echoTest "${fastqs_rcorrected[@]}" && echo "" - - -# Perform a test run of *filter-uncorrectable-fastq.py ----------------------- -i="${fastqs_rcorrected[0]}" -python ./submit-preprocessing-filter-uncorrectable-fastq.py \ - -1 "${i}.1.cor.fq.gz" \ - -2 "${i}.2.cor.fq.gz" \ - -s "${i}" -# File "./submit-preprocessing-filter-uncorrectable-fastq.py", line 82 -# print "%s reads processed" % counter -# ^ -# SyntaxError: Missing parentheses in call to 'print'. Did you mean print("%s reads processed" % counter)? -``` - - -##### Troubleshoot errors associated with the `rcorrector`-correction scripts (2022-1128-1129) -```bash -#!/bin/bash -#DONTRUN #CONTINUE - - -# Make sense of the error using 2to3 ----------------------------------------- -# It looks like the script is written in Python 2; install 2to3 and convert -#+ *filter-uncorrectable-fastq.py to Python 3 formatting -pip install 2to3 -# Collecting 2to3 -# Downloading 2to3-1.0-py3-none-any.whl (1.7 kB) -# Installing collected packages: 2to3 -# Successfully installed 2to3-1.0 - -which 2to3 -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/2to3 - -2to3 ./submit-preprocessing-filter-uncorrectable-fastq.py -``` -
-Results of 2to3 \*filter-uncorrectable-fastq.py printed to terminal: - -```txt -RefactoringTool: Skipping optional fixer: buffer -RefactoringTool: Skipping optional fixer: idioms -RefactoringTool: Skipping optional fixer: set_literal -RefactoringTool: Skipping optional fixer: ws_comma -RefactoringTool: Refactored ./submit-preprocessing-filter-uncorrectable-fastq.py ---- ./submit-preprocessing-filter-uncorrectable-fastq.py (original) -+++ ./submit-preprocessing-filter-uncorrectable-fastq.py (refactored) -@@ -23,7 +23,7 @@ - - import sys - import gzip --from itertools import izip,izip_longest -+from itertools importzip_longest - import argparse - from os.path import basename - -@@ -42,7 +42,7 @@ - "Collect data into fixed-length chunks or blocks" - # grouper('ABCDEFG', 3, 'x') --> ABC DEF Gxx - args = [iter(iterable)] * n -- return izip_longest(fillvalue=fillvalue, *args) -+ return zip_longest(fillvalue=fillvalue, *args) - - - if __name__=="__main__": -@@ -79,10 +79,10 @@ - for entry in R1: - counter+=1 - if counter%100000==0: -- print "%s reads processed" % counter -+ print("%s reads processed" % counter) - - head1,seq1,placeholder1,qual1=[i.strip() for i in entry] -- head2,seq2,placeholder2,qual2=[j.strip() for j in R2.next()] -+ head2,seq2,placeholder2,qual2=[j.strip() for j in next(R2)] - - if 'unfixable' in head1 and 'unfixable' not in head2: - unfix_r1_count+=1 -RefactoringTool: Files that need to be modified: -RefactoringTool: ./submit-preprocessing-filter-uncorrectable-fastq.py -``` -
-
- -`#DONE` Make the edits directly to the script - -Try rerunning things: -```bash -#!/bin/bash -#DONTRUN #CONTINUE - - -# Make an array for files of interest ---------------------------------------- -unset fastqs_rcorrected -typeset -a fastqs_rcorrected -while IFS=" " read -r -d $'\0'; do - fastqs_rcorrected+=( "${REPLY%.?.cor.fq.gz}" ) -done < <(\ - find "exp_preprocessing/08_rcorrector" \ - -type f \ - -name *.gz \ - -print0 \ - | sort -z \ -) -echo "w/duplicates (in the array)..." -echoTest "${fastqs_rcorrected[@]}" - -IFS=" " read -r -a fastqs_rcorrected \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${fastqs_rcorrected[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -echo "w/o duplicates (in the array)..." -echoTest "${fastqs_rcorrected[@]}" && echo "" - - -# Perform a test run of *filter-uncorrectable-fastq.py ----------------------- -i="${fastqs_rcorrected[0]}" -python ./submit-preprocessing-filter-uncorrectable-fastq.py \ - -1 "${i}.1.cor.fq.gz" \ - -2 "${i}.2.cor.fq.gz" \ - -s "${i}" -# Traceback (most recent call last): -# File "./submit-preprocessing-filter-uncorrectable-fastq.py", line 87, in -# if 'unfixable' in head1 and 'unfixable' not in head2: -# TypeError: a bytes-like object is required, not 'str' -``` - -`#DONE` Going to need to load this script into an IDE and step through things to resolve this error -`#DONE` Install `jupyterlab` -~~`#SKIP` Troubleshoot difficulties connecting a local browser to jupyterlab initialized from the HPC~~ -`#DONE` Or do the troubleshooting locally by, e.g., temporarily copying pertinent files and scripts to local (would require a local installation of `jupyterlab`, which would be good to have anyway) - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Install jupyterlab to Trinity_env -mamba install -c conda-forge jupyterlab -``` - -
-Messages from installation of jupyterlab printed to terminal: - -```txt -Transaction - - Prefix: /home/kalavatt/miniconda3/envs/Trinity_env - - Updating specs: - - - jupyterlab - - ca-certificates - - certifi - - openssl - - - Package Version Build Channel Size -──────────────────────────────────────────────────────────────────────────────────────────────────── - Install: -──────────────────────────────────────────────────────────────────────────────────────────────────── - - + anyio 3.6.2 pyhd8ed1ab_0 conda-forge/noarch 83 KB - + argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge/noarch 15 KB - + argon2-cffi-bindings 21.2.0 py37h540881e_2 conda-forge/linux-64 34 KB - + attrs 22.1.0 pyh71513ae_1 conda-forge/noarch 48 KB - + babel 2.11.0 pyhd8ed1ab_0 conda-forge/noarch 7 MB - + backcall 0.2.0 pyh9f0ad1d_0 conda-forge/noarch 13 KB - + backports 1.0 pyhd8ed1ab_3 conda-forge/noarch 6 KB - + backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge/noarch 9 KB - + beautifulsoup4 4.11.1 pyha770c72_0 conda-forge/noarch 96 KB - + bleach 5.0.1 pyhd8ed1ab_0 conda-forge/noarch 124 KB - + brotlipy 0.7.0 py37h540881e_1004 conda-forge/linux-64 342 KB - + cffi 1.15.1 py37h43b0acd_1 conda-forge/linux-64 227 KB - + charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge/noarch 36 KB - + cryptography 38.0.2 py37h38fbfac_1 conda-forge/linux-64 2 MB - + debugpy 1.6.0 py37hd23a5d3_0 conda-forge/linux-64 2 MB - + decorator 5.1.1 pyhd8ed1ab_0 conda-forge/noarch 12 KB - + defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge/noarch 23 KB - + entrypoints 0.4 pyhd8ed1ab_0 conda-forge/noarch 9 KB - + flit-core 3.8.0 pyhd8ed1ab_0 conda-forge/noarch 45 KB - + idna 3.4 pyhd8ed1ab_0 conda-forge/noarch 55 KB - + importlib-metadata 4.11.4 py37h89c1867_0 conda-forge/linux-64 33 KB - + importlib_resources 5.10.0 pyhd8ed1ab_0 conda-forge/noarch 29 KB - + ipykernel 6.16.2 pyh210e3f2_0 conda-forge/noarch 100 KB - + ipython 7.33.0 py37h89c1867_0 conda-forge/linux-64 1 MB - + ipython_genutils 0.2.0 py_1 conda-forge/noarch 21 KB - + jedi 0.18.2 pyhd8ed1ab_0 conda-forge/noarch 786 KB - + jinja2 3.1.2 pyhd8ed1ab_1 conda-forge/noarch 99 KB - + json5 0.9.5 pyh9f0ad1d_0 conda-forge/noarch 20 KB - + jsonschema 4.17.1 pyhd8ed1ab_0 conda-forge/noarch 69 KB - + jupyter_client 7.4.7 pyhd8ed1ab_0 conda-forge/noarch 92 KB - + jupyter_core 4.11.1 py37h89c1867_0 conda-forge/linux-64 81 KB - + jupyter_server 1.23.3 pyhd8ed1ab_0 conda-forge/noarch 233 KB - + jupyterlab 3.5.0 pyhd8ed1ab_0 conda-forge/noarch 6 MB - + jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge/noarch 17 KB - + jupyterlab_server 2.16.3 pyhd8ed1ab_0 conda-forge/noarch 50 KB - + libsodium 1.0.18 h36c2ea0_1 conda-forge/linux-64 366 KB - + markupsafe 2.1.1 py37h540881e_1 conda-forge/linux-64 22 KB - + matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge/noarch 12 KB - + mistune 2.0.4 pyhd8ed1ab_0 conda-forge/noarch 67 KB - + nbclassic 0.4.8 pyhd8ed1ab_0 conda-forge/noarch 8 MB - + nbclient 0.7.0 pyhd8ed1ab_0 conda-forge/noarch 65 KB - + nbconvert 7.2.5 pyhd8ed1ab_0 conda-forge/noarch 6 KB - + nbconvert-core 7.2.5 pyhd8ed1ab_0 conda-forge/noarch 193 KB - + nbconvert-pandoc 7.2.5 pyhd8ed1ab_0 conda-forge/noarch 5 KB - + nbformat 5.7.0 pyhd8ed1ab_0 conda-forge/noarch 106 KB - + nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge/noarch 10 KB - + notebook 6.5.2 pyha770c72_1 conda-forge/noarch 267 KB - + notebook-shim 0.2.2 pyhd8ed1ab_0 conda-forge/noarch 15 KB - + packaging 21.3 pyhd8ed1ab_0 conda-forge/noarch 36 KB - + pandoc 2.19.2 h32600fe_1 conda-forge/linux-64 30 MB - + pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge/noarch 11 KB - + parso 0.8.3 pyhd8ed1ab_0 conda-forge/noarch 69 KB - + pexpect 4.8.0 py37hc8dfbb8_1 conda-forge/linux-64 79 KB - + pickleshare 0.7.5 py37hc8dfbb8_1002 conda-forge/linux-64 13 KB - + pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge/noarch 9 KB - + prometheus_client 0.15.0 pyhd8ed1ab_0 conda-forge/noarch 50 KB - + prompt-toolkit 3.0.33 pyha770c72_0 conda-forge/noarch 259 KB - + psutil 5.9.3 py37h540881e_0 conda-forge/linux-64 348 KB - + ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge/noarch 16 KB - + pycparser 2.21 pyhd8ed1ab_0 conda-forge/noarch 100 KB - + pygments 2.13.0 pyhd8ed1ab_0 conda-forge/noarch 821 KB - + pyopenssl 22.1.0 pyhd8ed1ab_0 conda-forge/noarch 122 KB - + pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge/noarch 79 KB - + pyrsistent 0.18.1 py37h540881e_1 conda-forge/linux-64 91 KB - + pysocks 1.7.1 py37h89c1867_5 conda-forge/linux-64 28 KB - + python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge/noarch 240 KB - + python-fastjsonschema 2.16.2 pyhd8ed1ab_0 conda-forge/noarch 242 KB - + python_abi 3.7 2_cp37m conda-forge/linux-64 4 KB - + pytz 2022.6 pyhd8ed1ab_0 conda-forge/noarch 235 KB - + pyzmq 23.0.0 py37h0c0c2a8_0 conda-forge/linux-64 474 KB - + requests 2.28.1 pyhd8ed1ab_1 conda-forge/noarch 53 KB - + send2trash 1.8.0 pyhd8ed1ab_0 conda-forge/noarch 17 KB - + six 1.16.0 pyh6c4a22f_0 conda-forge/noarch 14 KB - + sniffio 1.3.0 pyhd8ed1ab_0 conda-forge/noarch 14 KB - + soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge/noarch 34 KB - + terminado 0.17.0 pyh41d4057_0 conda-forge/noarch 19 KB - + tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge/noarch 23 KB - + tomli 2.0.1 pyhd8ed1ab_0 conda-forge/noarch 16 KB - + tornado 6.2 py37h540881e_0 conda-forge/linux-64 651 KB - + traitlets 5.5.0 pyhd8ed1ab_0 conda-forge/noarch 85 KB - + typing_extensions 4.4.0 pyha770c72_0 conda-forge/noarch 29 KB - + urllib3 1.26.13 pyhd8ed1ab_0 conda-forge/noarch 108 KB - + wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge/noarch 33 KB - + webencodings 0.5.1 py_1 conda-forge/noarch 12 KB - + websocket-client 1.4.2 pyhd8ed1ab_0 conda-forge/noarch 43 KB - + zeromq 4.3.4 h9c3ff4c_1 conda-forge/linux-64 351 KB - + zipp 3.11.0 pyhd8ed1ab_0 conda-forge/noarch 15 KB - - Change: -──────────────────────────────────────────────────────────────────────────────────────────────────── - - - openssl 1.1.1s h7f8727e_0 installed - + openssl 1.1.1s h166bdaf_0 conda-forge/linux-64 Cached - - Summary: - - Install: 87 packages - Change: 1 packages - - Total download: 64 MB - -──────────────────────────────────────────────────────────────────────────────────────────────────── - -Confirm changes: [Y/n] Y -Finished pysocks (00m:00s) 28 KB 310 KB/s -Finished pyrsistent (00m:00s) 91 KB 841 KB/s -Finished libsodium (00m:00s) 366 KB 3 MB/s -Finished zeromq (00m:00s) 351 KB 3 MB/s -Finished traitlets (00m:00s) 85 KB 607 KB/s -Finished backcall (00m:00s) 13 KB 90 KB/s -Finished python_abi (00m:00s) 4 KB 26 KB/s -Finished send2trash (00m:00s) 17 KB 96 KB/s -Finished python-fastjsonschema (00m:00s) 242 KB 1 MB/s -Finished pyparsing (00m:00s) 79 KB 402 KB/s -Finished pandocfilters (00m:00s) 11 KB 56 KB/s -Finished backports (00m:00s) 6 KB 27 KB/s -Finished idna (00m:00s) 55 KB 239 KB/s -Finished zipp (00m:00s) 15 KB 64 KB/s -Finished charset-normalizer (00m:00s) 36 KB 141 KB/s -Finished matplotlib-inline (00m:00s) 12 KB 47 KB/s -Finished six (00m:00s) 14 KB 51 KB/s -Finished terminado (00m:00s) 19 KB 68 KB/s -Finished tinycss2 (00m:00s) 23 KB 74 KB/s -Finished bleach (00m:00s) 124 KB 390 KB/s -Finished jupyter_core (00m:00s) 81 KB 252 KB/s -Finished cffi (00m:00s) 227 KB 647 KB/s -Finished brotlipy (00m:00s) 342 KB 941 KB/s -Finished jsonschema (00m:00s) 69 KB 180 KB/s -Finished nbclient (00m:00s) 65 KB 164 KB/s -Finished ipykernel (00m:00s) 100 KB 250 KB/s -Finished notebook-shim (00m:00s) 15 KB 34 KB/s -Finished notebook (00m:00s) 267 KB 610 KB/s -Finished nbconvert-pandoc (00m:00s) 5 KB 11 KB/s -Finished tornado (00m:00s) 651 KB 1 MB/s -Finished backports.functools_lru_cache (00m:00s) 9 KB 18 KB/s -Finished decorator (00m:00s) 12 KB 23 KB/s -Finished websocket-client (00m:00s) 43 KB 81 KB/s -Finished ipython_genutils (00m:00s) 21 KB 39 KB/s -Finished webencodings (00m:00s) 12 KB 21 KB/s -Finished entrypoints (00m:00s) 9 KB 16 KB/s -Finished flit-core (00m:00s) 45 KB 78 KB/s -Finished attrs (00m:00s) 48 KB 81 KB/s -Finished jinja2 (00m:00s) 99 KB 164 KB/s -Finished packaging (00m:00s) 36 KB 58 KB/s -Finished wcwidth (00m:00s) 33 KB 52 KB/s -Finished importlib-metadata (00m:00s) 33 KB 51 KB/s -Finished argon2-cffi (00m:00s) 15 KB 20 KB/s -Finished argon2-cffi-bindings (00m:00s) 34 KB 44 KB/s -Finished requests (00m:00s) 53 KB 69 KB/s -Finished nbconvert (00m:00s) 6 KB 8 KB/s -Finished markupsafe (00m:00s) 22 KB 27 KB/s -Finished ptyprocess (00m:00s) 16 KB 19 KB/s -Finished pygments (00m:00s) 821 KB 957 KB/s -Finished mistune (00m:00s) 67 KB 75 KB/s -Finished pkgutil-resolve-name (00m:00s) 9 KB 9 KB/s -Finished pytz (00m:00s) 235 KB 258 KB/s -Finished debugpy (00m:00s) 2 MB 2 MB/s -Finished babel (00m:00s) 7 MB 8 MB/s -Finished pandoc (00m:00s) 30 MB 46 MB/s -Finished anyio (00m:00s) 83 KB 86 KB/s -Finished pexpect (00m:00s) 79 KB 82 KB/s -Finished jedi (00m:00s) 786 KB 795 KB/s -Finished nbclassic (00m:00s) 8 MB 8 MB/s -Finished cryptography (00m:00s) 2 MB 2 MB/s -Finished jupyterlab_server (00m:00s) 50 KB 49 KB/s -Finished urllib3 (00m:00s) 108 KB 107 KB/s -Finished prometheus_client (00m:00s) 50 KB 48 KB/s -Finished defusedxml (00m:00s) 23 KB 23 KB/s -Finished sniffio (00m:00s) 14 KB 13 KB/s -Finished jupyterlab_pygments (00m:00s) 17 KB 16 KB/s -Finished jupyter_client (00m:00s) 92 KB 85 KB/s -Finished nbconvert-core (00m:00s) 193 KB 178 KB/s -Finished importlib_resources (00m:00s) 29 KB 26 KB/s -Finished soupsieve (00m:00s) 34 KB 30 KB/s -Finished pickleshare (00m:00s) 13 KB 12 KB/s -Finished parso (00m:00s) 69 KB 61 KB/s -Finished python-dateutil (00m:00s) 240 KB 212 KB/s -Finished jupyterlab (00m:00s) 6 MB 5 MB/s -Finished tomli (00m:00s) 16 KB 13 KB/s -Finished prompt-toolkit (00m:00s) 259 KB 222 KB/s -Finished typing_extensions (00m:00s) 29 KB 25 KB/s -Finished pyopenssl (00m:00s) 122 KB 104 KB/s -Finished ipython (00m:00s) 1 MB 979 KB/s -Finished psutil (00m:00s) 348 KB 288 KB/s -Finished json5 (00m:00s) 20 KB 17 KB/s -Finished nest-asyncio (00m:00s) 10 KB 8 KB/s -Finished nbformat (00m:00s) 106 KB 87 KB/s -Finished jupyter_server (00m:00s) 233 KB 190 KB/s -Finished beautifulsoup4 (00m:00s) 96 KB 77 KB/s -Finished pycparser (00m:00s) 100 KB 79 KB/s -Finished pyzmq (00m:00s) 474 KB 288 KB/s -Downloading [====================================================================================================] (00m:12s) 38.44 MB/s -Extracting [====================================================================================================] (02m:12s) 87 / 87 -Preparing transaction: done -Verifying transaction: done -Executing transaction: done -``` -
-
- -For details on the resolution of these errors (2022-1129), see [`work-Python-local.md`](./work-Python-local.md) and [`filter_rCorrector-treated-fastqs.py`](../../bin/filter_rCorrector-treated-fastqs.py) (in particular, the GitHub commits for this `.py` file in `bin/`) - - -#### Continue work to discard `rcorrector`-processed read pairs that are "unfixable" (2022-1129) -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" || - echo "cd'ing failed; check on this" - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101 - -which python -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/python - -python --version -# Python 3.7.15 - -., -# total 3.6M -# drwxrws--- 15 kalavatt 1.9K Nov 29 15:00 ./ -# drwxrws--- 7 kalavatt 191 Nov 29 14:49 ../ -# drwxrws--- 3 kalavatt 160 Nov 9 15:23 exp_alignment_Bowtie_2/ -# drwxrws--- 3 kalavatt 94 Nov 20 11:06 exp_alignment_STAR/ -# drwxrws--- 3 kalavatt 94 Nov 18 13:04 exp_alignment_STAR_multi-hit/ -# drwxrws--- 4 kalavatt 190 Nov 28 13:03 exp_alignment_STAR_tags/ -# drwxrws--- 2 kalavatt 1.1K Nov 7 15:27 exp_FastQC/ -# drwxrws--- 2 kalavatt 206 Nov 20 13:40 exp_intron-length/ -# drwxrws--- 6 kalavatt 2.6K Nov 26 10:21 exp_PASA_trial/ -# drwxrws--- 2 kalavatt 854 Nov 7 14:31 exp_picardmetrics/ -# drwxrws--- 12 kalavatt 8.3K Nov 29 14:42 exp_preprocessing/ -# drwxrws--- 3 kalavatt 317 Nov 7 14:44 exp_Trinity/ -# drwxrws--- 4 kalavatt 242 Nov 24 12:27 exp_Trinity_trial/ -# drwxrws--- 3 kalavatt 720 Nov 8 10:03 files_fastq_symlinks/ -# drwxrws--- 2 kalavatt 778 Nov 29 14:09 notebook/ -# -rw-rw---- 1 kalavatt 14K Nov 16 12:23 notes-Alison-files-locations.md -# -rw-rw---- 1 kalavatt 29K Nov 16 12:23 notes-Alison-papers.md -# -rw-rw---- 1 kalavatt 1.3K Nov 16 12:23 notes-Alison-RNA-seq-kits.md -# -rw-rw---- 1 kalavatt 8.3K Nov 28 10:05 notes-miscellaneous-links.md -# -rw-rw---- 1 kalavatt 5.7K Nov 16 12:23 notes-RNA-seq-spike-ins.md -# -rw-rw---- 1 kalavatt 35K Nov 18 11:33 notes-UMIs-etc.md -# -rw-rw---- 1 kalavatt 264K Nov 29 14:57 work-Trinity-2.md -# -rw-rw---- 1 kalavatt 617 Nov 8 14:43 submit-Bowtie-2.test-1.sh -# -rw-rw---- 1 kalavatt 642 Nov 8 16:16 submit-Bowtie-2.test-2.sh -# -rw-rw---- 1 kalavatt 300 Nov 7 14:58 submit-FastQC.sh -# -rw-rw---- 1 kalavatt 1.2K Nov 28 12:48 submit-preprocessing-convert-bam-fastq.sh -# -rw-rw---- 1 kalavatt 450 Nov 26 14:00 submit-preprocessing-exclude-bam-reads-unmapped.sh -# -rw-rw---- 1 kalavatt 330 Nov 26 10:55 submit-preprocessing-fastqc.sh -# -rw-rw---- 1 kalavatt 4.3K Nov 29 06:52 submit-preprocessing-filter-uncorrectable-fastq.py -# -rw-rw---- 1 kalavatt 313 Nov 26 14:00 submit-preprocessing-index-bam.sh -# -rw-rw---- 1 kalavatt 942 Nov 28 09:18 submit-preprocessing-split-bam-species.sh -# -rw-rw---- 1 kalavatt 892 Nov 26 12:21 submit-preprocessing-star-genome-free.sh -# -rw-rw---- 1 kalavatt 1002 Nov 26 13:52 submit-preprocessing-star-genome-guided.sh -# -rw-rw---- 1 kalavatt 917 Nov 26 11:00 submit-preprocessing-trim_galore.sh -# -rw-rw---- 1 kalavatt 871 Nov 18 14:52 submit-STAR-alignReads-multi-hit.sh -# -rw-rw---- 1 kalavatt 874 Nov 18 14:53 submit-STAR-alignReads.tags.multi-hit-mode.sh -# -rw-rw---- 1 kalavatt 1.4K Nov 18 14:38 submit-STAR-alignReads.tags.rna-star.sh -# -rw-rw---- 1 kalavatt 694 Nov 28 07:50 submit-Trinity.sh -# -rw-rw---- 1 kalavatt 1.2K Nov 22 14:54 submit-Trinity-trial-genome-free.sh -# -rw-rw---- 1 kalavatt 1.2K Nov 22 10:47 submit-Trinity-trial-genome-guided.sh -# -rw-rw---- 1 kalavatt 45K Nov 29 14:09 work-Python-local.key-bindings-system.json -# -rw-rw---- 1 kalavatt 1.7K Nov 29 14:09 work-Python-local.key-bindings-user.json -# -rw-rw---- 1 kalavatt 53K Nov 29 14:52 work-Python-local.md -# -rw-rw---- 1 kalavatt 23K Nov 16 12:23 work-TPM-calculation.md -# -rw-rw---- 1 kalavatt 310K Nov 26 10:41 work-Trinity.md - - -# Get together the script for correcting rCorrected .fastq files ------------- -rm submit-preprocessing-filter-uncorrectable-fastq.py -cp \ - ../../bin/filter_rCorrector-treated-fastqs.py \ - submit-preprocessing-filter-uncorrectable-fastq.py -# '../../bin/filter_rCorrector-treated-fastqs.py' -> 'submit-preprocessing-filter-uncorrectable-fastq.py' - -# vi submit-preprocessing-filter-uncorrectable-fastq.py - - -# Make an array for files of interest ---------------------------------------- -unset fastqs_rcorrected -typeset -a fastqs_rcorrected -while IFS=" " read -r -d $'\0'; do - fastqs_rcorrected+=( "${REPLY%.?.cor.fq.gz}" ) -done < <(\ - find "exp_preprocessing/08_rcorrector" \ - -type f \ - -name *.gz \ - -print0 \ - | sort -z \ -) -echo "w/duplicates (in the array)..." -echoTest "${fastqs_rcorrected[@]}" - -IFS=" " read -r -a fastqs_rcorrected \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${fastqs_rcorrected[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -echo "w/o duplicates (in the array)..." -echoTest "${fastqs_rcorrected[@]}" && echo "" - - -# Perform a test run of *filter-uncorrectable-fastq.py ----------------------- -python submit-preprocessing-filter-uncorrectable-fastq.py --help -# usage: submit-preprocessing-filter-uncorrectable-fastq.py [-h] [-1 READS_LEFT] -# [-2 READS_RIGHT] -# [-s SAMPLE_ID] -# [-o DIR_OUT] -# [-g GZIP_OUT] -# -# Options for filtering, logging rCorrector fastq output -# -# optional arguments: -# -h, --help show this help message and exit -# -1 READS_LEFT, --reads_left READS_LEFT -# R1 fastq infile (gzipped or not), including path -# -2 READS_RIGHT, --reads_right READS_RIGHT -# R2 fastq infile (gzipped or not), including path -# -s SAMPLE_ID, --sample_id SAMPLE_ID -# sample name to write to log file -# -o DIR_OUT, --dir_out DIR_OUT -# outfile directory, including path -# -g GZIP_OUT, --gzip_out GZIP_OUT -# write gzipped fastq outfiles (True or False) - -i="${fastqs_rcorrected[0]}" -# echo "${i}" - -python submit-preprocessing-filter-uncorrectable-fastq.py \ - -1 "${i}.1.cor.fq.gz" \ - -2 "${i}.2.cor.fq.gz" \ - -s "${i}" \ - -o "exp_preprocessing/08_rcorrector" \ - -g True -# Traceback (most recent call last): -# File "submit-preprocessing-filter-uncorrectable-fastq.py", line 169, in -# unfix_log = open(opts.dir_out + '/rm_unfixable.%s.log' % opts.sample_id, 'w') -# FileNotFoundError: [Errno 2] No such file or directory: 'exp_preprocessing/08_rcorrector/rm_unfixable.exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.log' -``` - -Nice! It's working! -...well, until just the end, it seems - -~~`#DONE` Fix this error `#TOMORROW`; it should be straightforward: remove `opts.dir_out + ` from lines `169` and `194`~~ - - -##### Next steps following the successful completion of `rCorrector` treatment and correction (2022-1129) -- `#DONE` The next step is to get `SLURM` submission scripts set up for... - + the initial use of `rCorrector` - + the "correction" of `rCorrector`-treated files -- `#TODO` Also, need to get a couple of `FastQC` readouts in there, - + one after the initial use of `rCorrector` - + one after the use of the correction script -- After that, I'll want to run `Trinity` (`v2.12` for consistency; however, after this experiment, we'll move on to using `Trinity v2.14`) using the output from `04b` (genome-guided) and `08` (genome-free; `unfixrm.*`) -- Once that's done, I'll use the `.fasta` files as input to the `PASA` (`Singularity`) pipeline, generating outfiles that can be compared to the first run (*in which no preprocessing was performed*) -- `#TODO` Learn how to read and make sense of the outfiles, and then determine the next steps, which include running `Trinity` again and loading the data to `IGV` and or running `DETONATE`, etc. -- `#GOAL` Determine whether preprocessing makes an impact (positive or negative) on transcriptome assembly - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" || - echo "cd'ing failed; check on this" - - -# Get together the script for correcting rCorrected .fastq files ------------- -# Make the changes to filter_rCorrector-treated-fastqs.py described above... -rm submit-preprocessing-filter-uncorrectable-fastq.py -cp \ - ../../bin/filter_rCorrector-treated-fastqs.py \ - submit-preprocessing-filter-uncorrectable-fastq.py -# '../../bin/filter_rCorrector-treated-fastqs.py' -> 'submit-preprocessing-filter-uncorrectable-fastq.py' - -# vi submit-preprocessing-filter-uncorrectable-fastq.py - - -# Make an array for files of interest ---------------------------------------- -unset fastqs_rcorrected -typeset -a fastqs_rcorrected -while IFS=" " read -r -d $'\0'; do - fastqs_rcorrected+=( "${REPLY%.?.cor.fq.gz}" ) -done < <(\ - find "exp_preprocessing/08_rcorrector" \ - -type f \ - -name *.gz \ - -print0 \ - | sort -z \ -) -echo "w/duplicates (in the array)..." -echoTest "${fastqs_rcorrected[@]}" - -IFS=" " read -r -a fastqs_rcorrected \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${fastqs_rcorrected[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -echo "w/o duplicates (in the array)..." -echoTest "${fastqs_rcorrected[@]}" && echo "" - - -# Perform a test run of *filter-uncorrectable-fastq.py ----------------------- -# python submit-preprocessing-filter-uncorrectable-fastq.py --help - -i="${fastqs_rcorrected[0]}" -# echo "${i}" - -python submit-preprocessing-filter-uncorrectable-fastq.py \ - -1 "${i}.1.cor.fq.gz" \ - -2 "${i}.2.cor.fq.gz" \ - -s "${i}" \ - -o "exp_preprocessing/08_rcorrector" \ - -g True -# Traceback (most recent call last): -# File "submit-preprocessing-filter-uncorrectable-fastq.py", line 169, in -# unfix_log = open(opts.dir_out + '/rm_unfixable.%s.log' % opts.sample_id, 'w') -# FileNotFoundError: [Errno 2] No such file or directory: 'exp_preprocessing/08_rcorrector/rm_unfixable.exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.log' -``` - -`#NOTE` 2022-1201: Fixed this error on 2022-1130 while working on the below; for information on this, see the [changes committed to the repo on 2022-1130](https://github.com/kalavattam/2022_transcriptome-construction/commit/170329dfcd5abe1ad7c510c15b290d1b6bed3a04) - - -#### Get `SLURM` submission scripts set up for `rCorrector` and "correction of `rCorrector`" (2022-1130) - -##### ...for `rCorrector` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -Trinity_env - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" || - echo "cd'ing failed; check on this" - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101 - -which rcorrector -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/rcorrector - -which parallel -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/parallel - - -# Make an array for files of interest ---------------------------------------- -unset fastqs_from_bams -typeset -a fastqs_from_bams -while IFS=" " read -r -d $'\0'; do - fastqs_from_bams+=( "${REPLY%.?.fq.gz}" ) -done < <(\ - find "exp_preprocessing/06_bam-to-fastq" \ - -type f \ - -name *.exclude-unmapped.*.gz \ - -print0 \ - | sort -z \ -) -echo "w/duplicates (in the array)..." -echoTest "${fastqs_from_bams[@]}" -# exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all -# exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all -# exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all -# exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all - -# 2022-1202 -# exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all -# exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all -# exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all -# exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all - -IFS=" " read -r -a fastqs_from_bams \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${fastqs_from_bams[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -echo "w/o duplicates (in the array)..." -echoTest "${fastqs_from_bams[@]}" && echo "" -# exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all -# exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all - -# 2022-1202 -# exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all -# exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all - - -# Prep the SLURM script for running rcorrector ------------------------------- -threads=8 -outdir="exp_preprocessing/08_rcorrector" - -if [[ -f submit-preprocessing-rcorrector.sh ]]; then - rm submit-preprocessing-rcorrector.sh -fi -cat << script > "./submit-preprocessing-rcorrector.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./exp_preprocessing/submit-preprocessing-rcorrector.%J.err.txt -#SBATCH --output=./exp_preprocessing/submit-preprocessing-rcorrector.%J.out.txt - -# submit-preprocessing-rcorrector.sh -# KA -# $(date '+%Y-%m%d') - - -instring="\${1}" -outdir="\${2}" -threads="\${3}" - -parallel --header : --colsep " " -k -j 1 echo \\ -"run_rcorrector.pl \\ - -t {threads} \\ - -1 {instring}.1.fq.gz \\ - -2 {instring}.2.fq.gz \\ - -od {outdir}" \\ -::: threads "\${threads}" \\ -::: instring "\${instring}" \\ -::: outdir "\${outdir}" - -parallel --header : --colsep " " -k -j 1 \\ -run_rcorrector.pl \\ - -t {threads} \\ - -1 {instring}.1.fq.gz \\ - -2 {instring}.2.fq.gz \\ - -od {outdir} \\ -::: threads "\${threads}" \\ -::: instring "\${instring}" \\ -::: outdir "\${outdir}" -script -# vi submit-preprocessing-rcorrector.sh - - -# Submit jobs for running rcorrector ----------------------------------------- -for i in "${fastqs_from_bams[@]}"; do - # i="${fastqs_from_bams[0]}" - echo "Working with ${i}..." - sbatch ./submit-preprocessing-rcorrector.sh \ - "${i}" \ - "${outdir}" \ - "${threads}" - - sleep 0.25 - echo "" -done -``` - -
-Results of rCorrector echo test - -2022-1202 -```txt -Working with exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all... -run_rcorrector.pl -t 8 -1 exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.fq.gz -2 exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.fq.gz -od exp_preprocessing/08_rcorrector - -Working with exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all... -run_rcorrector.pl -t 8 -1 exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.fq.gz -2 exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.fq.gz -od exp_preprocessing/08_rcorrector -``` -
-
- -
-rCorrector job submission messages printed to terminal - -2022-1202 -```txt -Working with exp_preprocessing/06_bam-to-fastq/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all... -Submitted batch job 5147145 - -Working with exp_preprocessing/06_bam-to-fastq/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all... -Submitted batch job 5147146 -``` -
-
- - -##### ...for "correction of `rCorrector`" (2022-1130-1201) -`#DEKHO` -```bash -#!/bin/bash -#DONTRUN - -Trinity_env - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" || - echo "cd'ing failed; check on this" - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101 - -which rcorrector -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/rcorrector - -which parallel -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/parallel - - -# Make an array for files of interest ---------------------------------------- -unset fastqs_rcorrected -typeset -a fastqs_rcorrected -while IFS=" " read -r -d $'\0'; do - fastqs_rcorrected+=( "${REPLY%.?.cor.fq.gz}" ) -done < <(\ - find "exp_preprocessing/08_rcorrector" \ - -type f \ - -name *.exclude-unmapped.*.gz \ - -print0 \ - | sort -z \ -) -echo "w/duplicates (in the array)..." -echoTest "${fastqs_rcorrected[@]}" -# exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all -# exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all -# exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all -# exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all - -# 2022-1202 -# exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all -# exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all -# exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all -# exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all - -IFS=" " read -r -a fastqs_rcorrected \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${fastqs_rcorrected[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -echo "w/o duplicates (in the array)..." -echoTest "${fastqs_rcorrected[@]}" && echo "" -# exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all -# exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all - -# 2022-1202 -# exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all -# exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all - - -# Prep the SLURM script for running "rcorrector corrector" ------------------- -threads=1 -outdir="exp_preprocessing/08_rcorrector" - -if [[ -f submit-preprocessing-rcorrector-corrector.sh ]]; then - rm submit-preprocessing-rcorrector-corrector.sh -fi -cat << script > "./submit-preprocessing-rcorrector-corrector.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./exp_preprocessing/submit-preprocessing-rcorrector-corrector.%J.err.txt -#SBATCH --output=./exp_preprocessing/submit-preprocessing-rcorrector-corrector.%J.out.txt - -# submit-preprocessing-rcorrector-corrector.sh -# KA -# $(date '+%Y-%m%d') - - -instring="\${1}" -outdir="\${2}" - -parallel --header : --colsep " " -k -j 1 echo \\ -"python ./submit-preprocessing-filter-uncorrectable-fastq.py \\ - -1 {instring}.1.cor.fq.gz \\ - -2 {instring}.2.cor.fq.gz \\ - -s {instring} \\ - -o {outdir} \\ - -g True" \\ -::: instring \${instring} \\ -::: outdir \${outdir} - -parallel --header : --colsep " " -k -j 1 \\ -python ./submit-preprocessing-filter-uncorrectable-fastq.py \\ - -1 {instring}.1.cor.fq.gz \\ - -2 {instring}.2.cor.fq.gz \\ - -s {instring} \\ - -o {outdir} \\ - -g True \\ -::: instring \${instring} \\ -::: outdir \${outdir} -script -# vi submit-preprocessing-rcorrector-corrector.sh - - -# Submit jobs for running "rcorrector corrector" ----------------------------- -for i in "${fastqs_rcorrected[@]}"; do - echo "Working with ${i}..." - sbatch ./submit-preprocessing-rcorrector-corrector.sh \ - "${i}" \ - "${outdir}" - - sleep 0.25 - echo "" -done -``` - -
-Echo test for bash ./submit-preprocessing-rcorrector-corrector.sh: Messages printed to terminal: - -2022-1128 -```txt -Working with exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all... -python ./submit-preprocessing-filter-uncorrectable-fastq.py \ - -1 exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz \ - -2 exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz \ - -s exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all \ - -o exp_preprocessing/08_rcorrector \ - -g True - -Working with exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all... -python ./submit-preprocessing-filter-uncorrectable-fastq.py \ - -1 exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz \ - -2 exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz \ - -s exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all \ - -o exp_preprocessing/08_rcorrector \ - -g True -``` -
-
- - -### Run `FastQC` on the `.fastq`s from `rCorrector` and "`rCorrector` correction" -*Edited and reran (portions) on 2022-1202; this was done to correct a bug that is described in `results/2022-1101/work-fix-errors.md`* -`#DEKHO` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find "./exp_preprocessing/08_rcorrector" \ - -type f \ - -name *.exclude-unmapped.*.fq.gz \ - -print0 \ - | sort -z \ -) -echoTest "${infiles[@]}" -# ./exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz - -# 2022-1202 -# ./exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.cor.fq.gz -# ./exp_preprocessing/08_rcorrector/unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.cor.fq.gz - -threads=4 -outdir="exp_preprocessing/09_fastqc" - -mkdir -p "${outdir}" - -if [[ -f submit-preprocessing-fastqc.sh ]]; then - rm submit-preprocessing-fastqc.sh -fi -cat << script > "./submit-preprocessing-fastqc.sh" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./exp_preprocessing/submit-preprocessing-fastqc.%J.err.txt -#SBATCH --output=./exp_preprocessing/submit-preprocessing-fastqc.%J.out.txt - -# submit-preprocessing-fastqc.sh -# KA -# $(date '+%Y-%m%d') - - -infile="\${1}" -outdir="\${2}" -threads="\${3}" - -fastqc \\ - --threads "\${threads}" \\ - --outdir "\${outdir}" \\ - "\${infile}" -script -# vi submit-preprocessing-fastqc.sh - -# Submit jobs -for i in "${infiles[@]}"; do - echo "Working with ${i}..." - sbatch submit-preprocessing-fastqc.sh \ - "${i}" \ - "${outdir}" \ - "${threads}" - sleep 0.25 - echo "" -done -``` - -
-Job submission details printed to the terminal - -2022-1202 -```txt -Working with ./exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.cor.fq.gz... -Submitted batch job 5147336 - -Working with ./exp_preprocessing/08_rcorrector/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.cor.fq.gz... -Submitted batch job 5147337 - -Working with ./exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.cor.fq.gz... -Submitted batch job 5147338 - -Working with ./exp_preprocessing/08_rcorrector/5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.cor.fq.gz... -Submitted batch job 5147339 - -Working with ./exp_preprocessing/08_rcorrector/unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.cor.fq.gz... -Submitted batch job 5147340 - -Working with ./exp_preprocessing/08_rcorrector/unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.cor.fq.gz... -Submitted batch job 5147341 - -Working with ./exp_preprocessing/08_rcorrector/unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.1.cor.fq.gz... -Submitted batch job 5147342 - -Working with ./exp_preprocessing/08_rcorrector/unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.2.cor.fq.gz... -Submitted batch job 5147343 -``` -
-
-
- - -## Notes, thoughts, and next steps, 2022-1201-1202 -0. Now, we need to run `Trinity` on the preprocessed data twice: - - genome-free `Trinity` - - genome-guided `Trinity` -1. We need to set up a separate directory in `results/`, `2022-1201/`, that symlinks to the `Trinity` infiles, both unprocessed and those processed in `2022-1101/exp_preprocessing/` -2. Run `PASA` with `Trinity` outfiles from (a) running Trinity on unprocessed data and (b) running Trinity on preprocessed data, that is, (1) the genome-guided aligned files and (2) the genome-free unaligned files from those two runs; for example, in `2022-1201/data/`, there are symbolic links to... - - a1 - - a2 - - b1 - - b2 -3. Then, we need to determine which outfiles are appropriate to use for visual comparisons of results in `IGV` -4. Load those to `IGV` and then make visual comparisons: Does Alison know of individual regions we can focus on for making assessments? - -- So, it seems that I need to... - - `#DONE` review Alison's heuristics (what she wants to categorize as a result of this (and the info leading up to this which describes the data she's going to use for categorization)) - + `#QUESTION` Have these changed at all from what Alison wrote in her QE proposal? I remember she wrote out some things on the whiteboard when I met with her and Toshi once - - review my notes from the last time we discussed the issues she was seeing with her `Trinity` transcriptome assembly using the parameters from Blevins et al. (Mar Alba), *bioRxiv* 2019-0313 - -The following are key notes from reading Alison's QE proposal: -```txt -Antisense transcript classification schema: - I. By length - a. 3’ end only - b. full gene - c. into sense promotor - II. By stability: "if a transcript is not above a certain threshold in input, it will be - classified as rapidly degraded" - -#QUESTION For II, what is the input? How will it be measured, assessed, and thresholded? -``` -```txt -I. Schema for assessing "the interest" of antisense transcripts: - a. high antisense transcription - b. uniqueness to Q - c. potential biological effect on Q if sense strand is transcribed - -II. Home in on candidates from the above that... - a. extend across the full length of sense gene - b. appears to be "shorter 3’ transcript [that] looks like it could be inducing early - termination of sense transcription" - -#QUESTION How is antisense transcription evaluated to be "high" in Ia? -#QUESTION How to assess Ic? -#QUESTION How can you tell IIb just by looking at IGV tracks? You see the end of sense - transcription in the 3' UTR together with the antisense transcription specific - to/overlapping the 3' UTR? -``` -`#QUESTION` Are these still accurate? Have they changed at all since writing them? - -- `#IMPORTANT` Need a carefully defined, curated list of issues that we see in the results of transcriptome assembly, including visual examples - - `#QUESTION` What do we see and how does that compare to what we expect/"want"? - - I will put these together for a discussion with Brian Haas, who can guide us in what parts of the pipeline to change and/or what program (`Trinity` and/or `PASA`) parameters to tune - + Have touched base with Alison and Toshi about this; they're OK with me discussing the project and its issues, including evidence of the issues such as IGV screenshots - - `#QUESTION` Does Alison have lab notebook entries and/or any other documentation that covers this? For example, from combing through IGV, did she take notes on what she was saw and found to be problematic? - + If so, it'd be great if she copied and sent that/those to me (if it's physical, then paper copies; if digital, then point to it on the tsukiyamalab server and/or message it to me) - + If not, it'd be great for Alison to do the following bullet - - `#IMPORTANT` The most helpful thing for me, I think, would be Alison's rough notes that include the following: - + documentation for a small number of "problem categories" that describe... - * what the specific problem is, e.g., "There is transcription beyond a given part of a gene per the Ensembl `sacCer3` annotation" - * what we expect and/or "want," e.g., "We expect/want this to be included in the annotation for that transcript after having run `Trinity`/`PASA`" - + IGV screenshots and/or genomic coordinates of examples - + quick and dirty notes would be just fine as long as they cover the important issues - -- Other questions for Alison - - `#QUESTION` Did she try running `Trinity` with other parameters? Did she record any of those experiments, save the outfiles, take notes on the issues from those, etc.? - + If so, it'd be great to get those, including any observations, documentation, etc. - + If not, no big deal - - `#QUESTION` When evaluating nascent RNA expression, do we need to consider introns, splicing, etc. at all? Like, would we expect nascent or stready-state 4tU-seq signal to run into introns or skip them? - - `#QUESTION` `#IMPORTANT` What are the detailed steps that Alison was taking to address and work with the subpar annotation? Alison mentioned implementing some set operations with `bedtools`... - + `#TASK` It'd be great to get a systematic list of what Alison was trying to address and how she was trying to address it, including... - * the problems identified (itemized/categorized) - * the substeps for each step she was doing to address each problem - * whether that step was implemented in `bedtools` (or something) or was something she was addressing manually - + basically, just need... - * the issues, - * the things to address each issue with any rationale, etc., and - * the logic or steps to do the thing that addresses it, regardless of whether the logic/steps are performed with a program or done by hand - - `#QUESTION` I was assuming that steady-state 4tu-seq signal is the same as RNA-seq signal, but is that assumption correct? If not, then how are signals from each experiment different and in what ways? - - Is there a reason Alison aligned her data with Bowtie 2, a non-splice-aware aligner, versus something like HISAT2 or STAR, both splice-aware aligners? - - Is 4tU-seq signal, be it nascent and/or stead-state, more like, say, ChIP-seq signal than RNA-seq signal? - - `#QUESTION` In Alison's genome-guided `Trinity`-assembled transcriptome (parameters from from Blevins et al. (Mar Alba), *bioRxiv* 2019-0313), are there *K. lactis* reads in these `fastq` files, in addition to *S. cerevisiae* reads? - + `#ANSWER` Yes, and 20 S reads too (`#QUESTION` This is copied my notes from 2022-1025: Is this correct?) - -- Something we may want to add to the preprocessing pipeline: - - Alignment to a reference comprised solely of blacklisted regions - + Filtering out of these alignments from the "main" `.bam` file (that was aligned to a "full" reference) - - And/or creation of a reference in which the blacklisted regions are N-masked - + "Main" alignment to this reference instead of the "full" reference - -`#DUSRA` `IMPORTANT` -- Understanding of these abbreviations is opposite to what I recorded before: - + IN = input, steady-state - + IP = nascent, immunoprecipitation - -Apparently, we should be using IP (I thought we were), not IN; however, IN is fine for the test we're running now - -- Links to sort and store elsewhere later - + [Splice aware aligner - what does it mean?](https://www.biostars.org/p/175454/) - + Oyster River Protocol for (eukaryotic) transcriptome assembly - * [readthedocs](https://oyster-river-protocol.readthedocs.io/en/latest/) - * [GitHub](https://github.com/macmanes-lab/Oyster_River_Protocol) - * [Manuscript](https://peerj.com/articles/5428/) - + [Is it normal for RCorrector to remove millions of reads?](https://www.biostars.org/p/9484524/) - -
-
diff --git a/results/2022-1101/work-fix-errors.md b/results/2022-1101/work-fix-errors.md deleted file mode 100644 index 502ff31..0000000 --- a/results/2022-1101/work-fix-errors.md +++ /dev/null @@ -1,725 +0,0 @@ - -# `work_preprocessing_fix-errors.md` - -## Correcting issues w/the preprocessing pipeline, 2022-1201-1202 -- Observations, etc. with references to lines 25 to 69 of `work_Trinity-PASA_unprocessed-vs-preprocessed.md` - - In `"${d_N_prepro_multi}"`, I can find only files with extension `*.out.sc_all.bam`, not `*.out.exclude-unmapped.sc_all.bam` as expected - - Also, strangely, I gave files in which unmapped reads were excluded the extension `*.out.unmapped.bam`, which is very confusing: With this name, one would expect that the files are exclusively composed of unmapped reads, not alignments in which unmapped reads have been excluded - - Thus, I am expecting to find files with the extension `*.out.unmapped.sc_all.bam`; but, as I mentioned, I see only files with this extension: `*.out.sc_all.bam` - -- Question - - `#QUESTION` `#IMPORTANT` Are unmapped reads excluded from this file? - - `#ANSWER` Unfortunately, it seems that the answer is no, so I need to go back to the `2022-1101/` notebook, update the relevant code, and then rerun things... - -- Addressing the above - - `#DONE` It seems I made the error at line `4936`: `-name *out.bam`; change this to `-name *out.exclude-unmapped.bam` - - `#DONE` Go back to [this spot](../2022-1101/work-Trinity-2.md#set-up-the-star-alignment-steps-and-sub-steps-2022-1126) to start the above work - - `#DONE` While we're at it, change the extension for `.bam`s in which unmapped reads have been excluded from `*.out.unmapped.bam` to `*.out.exclude-unmapped.bam`; importantly, change `"$(basename "${i}" ".bam").unmapped.bam"` to `"$(basename "${i}" ".bam").exclude-unmapped.bam"`; then rerun these lines of code~~; then delete the previous `*.out.unmapped.bam` files~~ - + `#DONE` Regarding files for genome-free `Trinity`, change lines `4606`, `4611`, and `4624` - + `#DONE` Regarding files for genome-free `Trinity`, change lines `4820`, `4826`, and `4837` - + `#INPROGRESS` Other locations such as line `4934`, `5494`, `5645`, ~~`6449`~~, `6623`, `6776`, `6907` - - `#DONE` Also, there are no `.bam` indices for `sc_all` `.bam`s in `"${d_N_prepro}/04b_star-genome-guided"`, so I need to run that here... - - `#DONE` `#DEKHO` Rerun subsequent sections - + `#DONE` Filter `.bam`s to retain only *S. cerevisiae* alignments (2022-1128) - + `#DONE` Perform another quality check with `FastQC` (2022-1128) - + `#DONE` Convert the species-filtered `.bam`s from genome-free alignment to `.fastq`s - + `#DONE` Perform a `FastQC` quality check for the new `.fastq` files (2022-1128) - + `#DONE` Remove erroneous k-mers from reads with `rCorrector` and "correct" the outfiles - + `#DONE` Run `FastQC` on the `.fastq`s from `rCorrector` and "`rCorrector` correction" - -`#DONE` 2022-1201: Continue to address the issues, then run `Trinity`, then run `PASA` - -
-Accomplishing the third TODO above, bullet 1 - -```bash -#!/bin/bash -#DONTRUN - -Trinity_env - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_preprocessing/04a_star-genome-free" - -ls -lhaFG -# total 8.6G -# drwxrws--- 4 kalavatt 1.6K Dec 1 13:22 ./ -# drwxrws--- 13 kalavatt 13K Dec 1 13:22 ../ -# -rw-rw---- 1 kalavatt 1.2G Nov 26 12:23 5781_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 58K Nov 26 13:07 5781_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 679M Dec 1 13:23 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 525M Nov 28 09:20 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 40K Nov 28 12:35 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai -# -rw-rw---- 1 kalavatt 817M Nov 28 12:37 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam -# -rw-rw---- 1 kalavatt 687M Nov 26 13:34 5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 26 13:37 5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai -# -rw-rw---- 1 kalavatt 2.0K Nov 26 12:23 5781_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.2K Nov 26 12:23 5781_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 364 Nov 26 12:23 5781_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 36K Nov 26 12:22 5781_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 12:23 5781_Q_IN_merged_STARtmp/ -# -rw-rw---- 1 kalavatt 920M Nov 26 12:22 5782_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 60K Nov 26 13:07 5782_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 518M Dec 1 13:23 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 435M Nov 28 09:20 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 38K Nov 28 12:35 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai -# -rw-rw---- 1 kalavatt 667M Nov 28 12:37 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam -# -rw-rw---- 1 kalavatt 524M Nov 26 13:33 5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 26 13:37 5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai -# -rw-rw---- 1 kalavatt 2.0K Nov 26 12:22 5782_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.3K Nov 26 12:22 5782_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 246 Nov 26 12:22 5782_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 31K Nov 26 12:22 5782_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 12:22 5782_Q_IN_merged_STARtmp/ -``` - -Somehow, `*.out.exclude-unmapped.bam` are not the same size as `*.out.unmapped.bam`... Do I need to restart the pipeline from step 4 then? - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -samtools view -c 5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam # 20069254 -samtools view -c 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam # 20069254 -samtools view -c 5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam # 14834474 -samtools view -c 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam # 14834474 -``` - -OK, so it must be a compression thing; however, let's do one more check just to be sure... - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -calculate_run_time() { - # Calculate run time for chunk of code - # - # :param 1: start time in $(date +%s) format - # :param 2: end time in $(date +%s) format - # :param 3: message to be displayed when printing the run time (chr) - run_time="$(echo "${2}" - "${1}" | bc -l)" - - echo "" - echo "${3}" - printf 'Run time: %dh:%dm:%ds\n' \ - $(( run_time/3600 )) $(( run_time%3600/60 )) $(( run_time%60 )) - echo "" -} - - -display_spinning_icon() { - # Display "spinning icon" while a background process runs - # - # :param 1: PID of the last program the shell ran in the background (int) - # :param 2: message to be displayed next to the spinning icon (chr) - spin="/|\\–" - i=0 - while kill -0 "${1}" 2> /dev/null; do - i=$(( (i + 1) % 4 )) - printf "\r${spin:$i:1} %s" "${2}" - sleep .15 - done -} - - -list_tally_flags() { - # List and tally flags in a bam infile; function acts on a bam infile to - # perform piped commands (samtools view, cut, sort, uniq -c, sort -nr) that - # list and tally flags; function writes the results to a txt outfile, the - # name of which is derived from the txt infile - # - # :param 1: name of bam infile, including path (chr) - start="$(date +%s)" - - samtools view "${1}" \ - | cut -d$'\t' -f 2 \ - | sort \ - | uniq -c \ - | sort -nr \ - > "${1/.bam/.flags.txt}" & - display_spinning_icon $! \ - "Running piped commands (samtools view, cut, sort, uniq -c, sort -nr) on $(basename "${1}")... " - - end="$(date +%s)" - echo "" - calculate_run_time "${start}" "${end}" \ - "List and tally flags in $(basename "${1}")." -} - - -list_tally_flags 5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -list_tally_flags 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -list_tally_flags 5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -list_tally_flags 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# Wait for the commands to complete... - -head -20 5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# 6396717 99 -# 6396717 147 -# 3547678 83 -# 3547678 163 -# 57025 659 -# 57025 611 -# 33207 675 -# 33207 595 - -head -20 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# 6396717 99 -# 6396717 147 -# 3547678 83 -# 3547678 163 -# 57025 659 -# 57025 611 -# 33207 675 -# 33207 595 - -head -20 5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# 4764058 99 -# 4764058 147 -# 2589346 83 -# 2589346 163 -# 40236 659 -# 40236 611 -# 23597 675 -# 23597 595 - -head -20 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# 4764058 99 -# 4764058 147 -# 2589346 83 -# 2589346 163 -# 40236 659 -# 40236 611 -# 23597 675 -# 23597 595 -``` - -OK, I think it's OK; there's no need to restart the pipeline from step 4 then (or do anything more drastic) - -Clean up the work you did -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -ls -lhaFG -# total 8.6G -# drwxrws--- 4 kalavatt 1.9K Dec 1 13:44 ./ -# drwxrws--- 13 kalavatt 13K Dec 1 13:22 ../ -# -rw-rw---- 1 kalavatt 1.2G Nov 26 12:23 5781_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 58K Nov 26 13:07 5781_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 679M Dec 1 13:23 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 94 Dec 1 13:44 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 525M Nov 28 09:20 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 40K Nov 28 12:35 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai -# -rw-rw---- 1 kalavatt 817M Nov 28 12:37 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam -# -rw-rw---- 1 kalavatt 687M Nov 26 13:34 5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 26 13:37 5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai -# -rw-rw---- 1 kalavatt 94 Dec 1 13:44 5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# -rw-rw---- 1 kalavatt 2.0K Nov 26 12:23 5781_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.2K Nov 26 12:23 5781_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 364 Nov 26 12:23 5781_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 36K Nov 26 12:22 5781_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 12:23 5781_Q_IN_merged_STARtmp/ -# -rw-rw---- 1 kalavatt 920M Nov 26 12:22 5782_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 60K Nov 26 13:07 5782_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 518M Dec 1 13:23 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 94 Dec 1 13:45 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 435M Nov 28 09:20 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 38K Nov 28 12:35 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai -# -rw-rw---- 1 kalavatt 667M Nov 28 12:37 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam -# -rw-rw---- 1 kalavatt 524M Nov 26 13:33 5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 26 13:37 5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai -# -rw-rw---- 1 kalavatt 94 Dec 1 13:44 5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# -rw-rw---- 1 kalavatt 2.0K Nov 26 12:22 5782_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.3K Nov 26 12:22 5782_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 246 Nov 26 12:22 5782_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 31K Nov 26 12:22 5782_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 12:22 5782_Q_IN_merged_STARtmp/ - -for i in *.out.unmapped.bam *.out.unmapped.bam.bai; do - mv "${i}" "mistake.${i}" -done - -for i in *.flags.txt; do - mv "${i}" "check.${i}" -done - -ls -lhaFG -# total 8.6G -# drwxrws--- 4 kalavatt 2.0K Dec 1 13:59 ./ -# drwxrws--- 13 kalavatt 13K Dec 1 13:22 ../ -# -rw-rw---- 1 kalavatt 1.2G Nov 26 12:23 5781_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 58K Nov 26 13:07 5781_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 679M Dec 1 13:23 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 525M Nov 28 09:20 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 40K Nov 28 12:35 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai -# -rw-rw---- 1 kalavatt 817M Nov 28 12:37 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam -# -rw-rw---- 1 kalavatt 2.0K Nov 26 12:23 5781_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.2K Nov 26 12:23 5781_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 364 Nov 26 12:23 5781_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 36K Nov 26 12:22 5781_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 12:23 5781_Q_IN_merged_STARtmp/ -# -rw-rw---- 1 kalavatt 920M Nov 26 12:22 5782_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 60K Nov 26 13:07 5782_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 518M Dec 1 13:23 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 435M Nov 28 09:20 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 38K Nov 28 12:35 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai -# -rw-rw---- 1 kalavatt 667M Nov 28 12:37 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam -# -rw-rw---- 1 kalavatt 2.0K Nov 26 12:22 5782_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.3K Nov 26 12:22 5782_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 246 Nov 26 12:22 5782_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 31K Nov 26 12:22 5782_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 12:22 5782_Q_IN_merged_STARtmp/ -# -rw-rw---- 1 kalavatt 94 Dec 1 13:44 check.5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 94 Dec 1 13:44 check.5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# -rw-rw---- 1 kalavatt 94 Dec 1 13:45 check.5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 94 Dec 1 13:44 check.5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# -rw-rw---- 1 kalavatt 687M Nov 26 13:34 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 26 13:37 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai -# -rw-rw---- 1 kalavatt 524M Nov 26 13:33 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 26 13:37 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai -``` -
-
- -
-Accomplishing the third TODO above, bullet 2 - -```bash -#!/bin/bash -#DONTRUN - -Trinity_env - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101/exp_preprocessing/04b_star-genome-guided" - -ls -lhaFG -# total 14G -# drwx--S--- 4 kalavatt 1.5K Dec 1 14:31 ./ -# drwxrws--- 13 kalavatt 13K Dec 1 14:31 ../ -# -rw-rw---- 1 kalavatt 2.0G Nov 26 13:55 5781_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 69K Nov 26 14:00 5781_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 1.5G Dec 1 14:27 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 67K Dec 1 14:31 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 1.2G Nov 28 09:20 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 1.5G Nov 26 14:01 5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 67K Nov 26 14:02 5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai -# -rw-rw---- 1 kalavatt 2.0K Nov 26 13:55 5781_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.9K Nov 26 13:55 5781_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 482 Nov 26 13:55 5781_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 74K Nov 26 13:55 5781_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 13:55 5781_Q_IN_merged_STARtmp/ -# -rw-rw---- 1 kalavatt 1.5G Nov 26 13:54 5782_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 68K Nov 26 14:00 5782_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 1.2G Dec 1 14:27 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 65K Dec 1 14:31 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 878M Nov 28 09:20 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 1.2G Nov 26 14:01 5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 65K Nov 26 14:02 5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai -# -rw-rw---- 1 kalavatt 2.0K Nov 26 13:54 5782_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.9K Nov 26 13:54 5782_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 364 Nov 26 13:54 5782_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 57K Nov 26 13:54 5782_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 13:54 5782_Q_IN_merged_STARtmp/ - -samtools view -c 5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam # 46262694 -samtools view -c 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam # 46262694 -samtools view -c 5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam # 34997128 -samtools view -c 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam # 34997128 - -list_tally_flags 5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -list_tally_flags 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -list_tally_flags 5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -list_tally_flags 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam - -head -20 5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# 6750615 99 -# 6750615 147 -# 6619384 419 -# 6619384 339 -# 6211950 83 -# 6211950 163 -# 3334429 403 -# 3334429 355 -# 60710 659 -# 60710 611 -# 60565 931 -# 60565 851 -# 57959 675 -# 57959 595 -# 35735 915 -# 35735 867 - -head -20 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# 6750615 99 -# 6750615 147 -# 6619384 419 -# 6619384 339 -# 6211950 83 -# 6211950 163 -# 3334429 403 -# 3334429 355 -# 60710 659 -# 60710 611 -# 60565 931 -# 60565 851 -# 57959 675 -# 57959 595 -# 35735 915 -# 35735 867 - -head -20 5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# 5902629 419 -# 5902629 339 -# 5194111 83 -# 5194111 163 -# 4888963 99 -# 4888963 147 -# 1366662 403 -# 1366662 355 -# 46863 931 -# 46863 851 -# 44177 675 -# 44177 595 -# 41156 659 -# 41156 611 -# 14003 915 -# 14003 867 - -head -20 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# 5902629 419 -# 5902629 339 -# 5194111 83 -# 5194111 163 -# 4888963 99 -# 4888963 147 -# 1366662 403 -# 1366662 355 -# 46863 931 -# 46863 851 -# 44177 675 -# 44177 595 -# 41156 659 -# 41156 611 -# 14003 915 -# 14003 867 - -for i in *.out.unmapped.bam *.out.unmapped.bam.bai; do - mv "${i}" "mistake.${i}" -done - -for i in *.flags.txt; do - mv "${i}" "check.${i}" -done - -ls -lhaFG -# total 14G -# drwx--S--- 4 kalavatt 1.9K Dec 1 14:47 ./ -# drwxrws--- 13 kalavatt 13K Dec 1 14:31 ../ -# -rw-rw---- 1 kalavatt 2.0G Nov 26 13:55 5781_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 69K Nov 26 14:00 5781_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 1.5G Dec 1 14:27 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 67K Dec 1 14:31 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 1.2G Nov 28 09:20 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 2.0K Nov 26 13:55 5781_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.9K Nov 26 13:55 5781_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 482 Nov 26 13:55 5781_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 74K Nov 26 13:55 5781_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 13:55 5781_Q_IN_merged_STARtmp/ -# -rw-rw---- 1 kalavatt 1.5G Nov 26 13:54 5782_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 68K Nov 26 14:00 5782_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 1.2G Dec 1 14:27 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 65K Dec 1 14:31 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 878M Nov 28 09:20 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 2.0K Nov 26 13:54 5782_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.9K Nov 26 13:54 5782_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 364 Nov 26 13:54 5782_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 57K Nov 26 13:54 5782_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 13:54 5782_Q_IN_merged_STARtmp/ -# -rw-rw---- 1 kalavatt 190 Dec 1 14:39 check.5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 190 Dec 1 14:38 check.5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# -rw-rw---- 1 kalavatt 190 Dec 1 14:41 check.5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 190 Dec 1 14:40 check.5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# -rw-rw---- 1 kalavatt 1.5G Nov 26 14:01 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 67K Nov 26 14:02 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai -# -rw-rw---- 1 kalavatt 1.2G Nov 26 14:01 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 65K Nov 26 14:02 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai -``` -
-
- -
-TODO #5, bullet #1: 'Filter .bams to retain only S. cerevisiae alignments (2022-1128)' - -```bash -#!/bin/bash -#DONTRUN - -grabnode - -Trinity_env - -# Alias to cd to 2022_transcriptome-construction directory -transcriptome -cd "results/2022-1101" || echo "cd'ing failed; check on this" -cd "exp_preprocessing" || echo "cd'ing failed; check on this" - -cd "04a"* || echo "cd'ing failed; check on this" -., -# total 8.6G -# drwxrws--- 4 kalavatt 2.2K Dec 1 14:07 ./ -# drwxrws--- 13 kalavatt 14K Dec 2 08:13 ../ -# -rw-rw---- 1 kalavatt 1.2G Nov 26 12:23 5781_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 58K Nov 26 13:07 5781_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 679M Dec 1 13:23 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 56K Dec 1 14:07 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 525M Nov 28 09:20 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 40K Nov 28 12:35 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai -# -rw-rw---- 1 kalavatt 817M Nov 28 12:37 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam -# -rw-rw---- 1 kalavatt 2.0K Nov 26 12:23 5781_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.2K Nov 26 12:23 5781_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 364 Nov 26 12:23 5781_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 36K Nov 26 12:22 5781_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 12:23 5781_Q_IN_merged_STARtmp/ -# -rw-rw---- 1 kalavatt 920M Nov 26 12:22 5782_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 60K Nov 26 13:07 5782_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 518M Dec 1 13:23 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 56K Dec 1 14:07 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 435M Nov 28 09:20 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 38K Nov 28 12:35 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai -# -rw-rw---- 1 kalavatt 667M Nov 28 12:37 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam -# -rw-rw---- 1 kalavatt 2.0K Nov 26 12:22 5782_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.3K Nov 26 12:22 5782_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 246 Nov 26 12:22 5782_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 31K Nov 26 12:22 5782_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 12:22 5782_Q_IN_merged_STARtmp/ -# -rw-rw---- 1 kalavatt 94 Dec 1 13:44 check.5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 94 Dec 1 13:44 check.5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# -rw-rw---- 1 kalavatt 94 Dec 1 13:45 check.5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 94 Dec 1 13:44 check.5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# -rw-rw---- 1 kalavatt 687M Nov 26 13:34 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 26 13:37 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai -# -rw-rw---- 1 kalavatt 524M Nov 26 13:33 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 26 13:37 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai - -ls -1 *.out.sc_all.* -# 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai -# 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam -# 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai -# 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam - -rename -n 's/578/mistake.578/g' *.out.sc_all.* -# '5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam' would be renamed to 'mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam' -# '5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai' would be renamed to 'mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai' -# '5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam' would be renamed to 'mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam' -# '5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam' would be renamed to 'mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam' -# '5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai' would be renamed to 'mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai' -# '5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam' would be renamed to 'mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam' - -rename 's/578/mistake.578/g' *.out.sc_all.* - -., -total 8.6G -# drwxrws--- 4 kalavatt 2.2K Dec 2 08:25 ./ -# drwxrws--- 13 kalavatt 14K Dec 2 08:13 ../ -# -rw-rw---- 1 kalavatt 1.2G Nov 26 12:23 5781_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 58K Nov 26 13:07 5781_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 679M Dec 1 13:23 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 56K Dec 1 14:07 5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 2.0K Nov 26 12:23 5781_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.2K Nov 26 12:23 5781_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 364 Nov 26 12:23 5781_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 36K Nov 26 12:22 5781_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 12:23 5781_Q_IN_merged_STARtmp/ -# -rw-rw---- 1 kalavatt 920M Nov 26 12:22 5782_Q_IN_mergedAligned.sortedByCoord.out.bam -# -rw-rw---- 1 kalavatt 60K Nov 26 13:07 5782_Q_IN_mergedAligned.sortedByCoord.out.bam.bai -# -rw-rw---- 1 kalavatt 518M Dec 1 13:23 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam -# -rw-rw---- 1 kalavatt 56K Dec 1 14:07 5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.bam.bai -# -rw-rw---- 1 kalavatt 2.0K Nov 26 12:22 5782_Q_IN_mergedLog.final.out -# -rw-rw---- 1 kalavatt 8.3K Nov 26 12:22 5782_Q_IN_mergedLog.out -# -rw-rw---- 1 kalavatt 246 Nov 26 12:22 5782_Q_IN_mergedLog.progress.out -# -rw-rw---- 1 kalavatt 31K Nov 26 12:22 5782_Q_IN_mergedSJ.out.tab -# drwx--S--- 3 kalavatt 25 Nov 26 12:22 5782_Q_IN_merged_STARtmp/ -# -rw-rw---- 1 kalavatt 94 Dec 1 13:44 check.5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 94 Dec 1 13:44 check.5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# -rw-rw---- 1 kalavatt 94 Dec 1 13:45 check.5782_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.flags.txt -# -rw-rw---- 1 kalavatt 94 Dec 1 13:44 check.5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.flags.txt -# -rw-rw---- 1 kalavatt 525M Nov 28 09:20 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 40K Nov 28 12:35 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai -# -rw-rw---- 1 kalavatt 817M Nov 28 12:37 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam -# -rw-rw---- 1 kalavatt 687M Nov 26 13:34 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 26 13:37 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai -# -rw-rw---- 1 kalavatt 435M Nov 28 09:20 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 kalavatt 38K Nov 28 12:35 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.bam.bai -# -rw-rw---- 1 kalavatt 667M Nov 28 12:37 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.sort-n.bam -# -rw-rw---- 1 kalavatt 524M Nov 26 13:33 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam -# -rw-rw---- 1 kalavatt 56K Nov 26 13:37 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.unmapped.bam.bai -``` -
-
- -
-TODO #5, bullet #2: 'Perform another quality check with `FastQC` (2022-1128)' - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd ../05a_fastqc/ -rename 's/578/mistake.578/g' *.out.sc_all_* - -cd ../05b_fastqc/ -rename 's/578/mistake.578/g' *.out.sc_all_* -``` -
- -
-TODO #5, bullet #3: 'Convert the species-filtered .bams from genome-free alignment to .fastqs' - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd ../06_bam-to-fastq/ - -., -# total 1.2G -# drwxrws--- 2 kalavatt 296 Nov 28 12:49 ./ -# drwxrws--- 13 kalavatt 15K Dec 2 08:53 ../ -# -rw-rw---- 1 kalavatt 264M Nov 28 12:50 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.fq.gz -# -rw-rw---- 1 kalavatt 274M Nov 28 12:50 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.fq.gz -# -rw-rw---- 1 kalavatt 214M Nov 28 12:49 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.fq.gz -# -rw-rw---- 1 kalavatt 223M Nov 28 12:49 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.fq.gz - -rename -n 's/578/mistake.578/g' *.out.sc_all.* -# '5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.fq.gz' would be renamed to 'mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.fq.gz' -# '5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.fq.gz' would be renamed to 'mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.fq.gz' -# '5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.fq.gz' would be renamed to 'mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.fq.gz' -# '5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.fq.gz' would be renamed to 'mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.fq.gz' - -rename 's/578/mistake.578/g' *.out.sc_all.* - -., -# total 1.2G -# drwxrws--- 2 kalavatt 328 Dec 2 09:18 ./ -# drwxrws--- 13 kalavatt 15K Dec 2 08:53 ../ -# -rw-rw---- 1 kalavatt 264M Nov 28 12:50 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.fq.gz -# -rw-rw---- 1 kalavatt 274M Nov 28 12:50 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.fq.gz -# -rw-rw---- 1 kalavatt 214M Nov 28 12:49 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.fq.gz -# -rw-rw---- 1 kalavatt 223M Nov 28 12:49 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.fq.gz -``` -
-
- -
-TODO #5, bullet #4: 'Perform a `FastQC` quality check for the new `.fastq` files (2022-1128)' - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd ../07_fastqc -., -# total 6.8M -# drwxrws--- 2 kalavatt 636 Nov 28 13:18 ./ -# drwxrws--- 13 kalavatt 15K Dec 2 09:20 ../ -# -rw-rw---- 1 kalavatt 600K Nov 28 13:11 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1_fastqc.html -# -rw-rw---- 1 kalavatt 393K Nov 28 13:11 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1_fastqc.zip -# -rw-rw---- 1 kalavatt 596K Nov 28 13:11 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2_fastqc.html -# -rw-rw---- 1 kalavatt 386K Nov 28 13:11 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2_fastqc.zip -# -rw-rw---- 1 kalavatt 602K Nov 28 13:11 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1_fastqc.html -# -rw-rw---- 1 kalavatt 399K Nov 28 13:11 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1_fastqc.zip -# -rw-rw---- 1 kalavatt 599K Nov 28 13:11 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2_fastqc.html -# -rw-rw---- 1 kalavatt 390K Nov 28 13:11 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2_fastqc.zip - -rename 's/578/mistake.578/g' *.out.sc_all.* -., -# total 6.8M -# drwxrws--- 2 kalavatt 700 Dec 2 09:37 ./ -# drwxrws--- 13 kalavatt 15K Dec 2 09:20 ../ -# -rw-rw---- 1 kalavatt 600K Nov 28 13:11 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1_fastqc.html -# -rw-rw---- 1 kalavatt 393K Nov 28 13:11 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1_fastqc.zip -# -rw-rw---- 1 kalavatt 596K Nov 28 13:11 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2_fastqc.html -# -rw-rw---- 1 kalavatt 386K Nov 28 13:11 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2_fastqc.zip -# -rw-rw---- 1 kalavatt 602K Nov 28 13:11 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1_fastqc.html -# -rw-rw---- 1 kalavatt 399K Nov 28 13:11 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1_fastqc.zip -# -rw-rw---- 1 kalavatt 599K Nov 28 13:11 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2_fastqc.html -# -rw-rw---- 1 kalavatt 390K Nov 28 13:11 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2_fastqc.zip -``` -
- -
-TODO #5, bullet #5: 'Remove erroneous k-mers from reads with rCorrector and "correct" the outfiles' - -`#DEKHO` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd ../08_rcorrector/ -., -# total 2.7G -# drwxrws--- 2 kalavatt 656 Dec 1 09:30 ./ -# drwxrws--- 13 kalavatt 15K Dec 2 09:38 ../ -# -rw-rw---- 1 kalavatt 355M Nov 30 12:51 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz -# -rw-rw---- 1 kalavatt 365M Nov 30 12:51 5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz -# -rw-rw---- 1 kalavatt 292M Nov 30 12:52 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz -# -rw-rw---- 1 kalavatt 301M Nov 30 12:52 5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz -# -rw-rw---- 1 kalavatt 210M Dec 1 09:26 unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz -# -rw-rw---- 1 kalavatt 218M Dec 1 09:26 unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz -# -rw-rw---- 1 kalavatt 162M Dec 1 09:23 unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz -# -rw-rw---- 1 kalavatt 169M Dec 1 09:23 unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz - -rename 's/578/mistake.578/g' 578?_* -rename 's/unfixrm/mistake.unfixrm/g' unfixrm.* -., -# total 2.7G -# drwxrws--- 2 kalavatt 720 Dec 2 09:50 ./ -# drwxrws--- 13 kalavatt 15K Dec 2 09:38 ../ -# -rw-rw---- 1 kalavatt 355M Nov 30 12:51 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz -# -rw-rw---- 1 kalavatt 365M Nov 30 12:51 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz -# -rw-rw---- 1 kalavatt 292M Nov 30 12:52 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz -# -rw-rw---- 1 kalavatt 301M Nov 30 12:52 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz -# -rw-rw---- 1 kalavatt 210M Dec 1 09:26 mistake.unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz -# -rw-rw---- 1 kalavatt 218M Dec 1 09:26 mistake.unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz -# -rw-rw---- 1 kalavatt 162M Dec 1 09:23 mistake.unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor.fq.gz -# -rw-rw---- 1 kalavatt 169M Dec 1 09:23 mistake.unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor.fq.gz -``` -
-
- -
-Run FastQC on the .fastqs from rCorrector and "rCorrector correction" - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd ../09_fastqc/ - -rename 's/578/mistake.578/g' 578?_* -rename 's/unfixrm/mistake.unfixrm/g' unfixrm.* -., -# total 14M -# drwxrws--- 2 kalavatt 1.5K Dec 2 10:23 ./ -# drwxrws--- 13 kalavatt 17K Dec 2 10:16 ../ -# -rw-rw---- 1 kalavatt 598K Dec 1 09:42 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor_fastqc.html -# -rw-rw---- 1 kalavatt 390K Dec 1 09:42 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor_fastqc.zip -# -rw-rw---- 1 kalavatt 593K Dec 1 09:42 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor_fastqc.html -# -rw-rw---- 1 kalavatt 382K Dec 1 09:42 mistake.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor_fastqc.zip -# -rw-rw---- 1 kalavatt 597K Dec 1 09:42 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor_fastqc.html -# -rw-rw---- 1 kalavatt 392K Dec 1 09:42 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor_fastqc.zip -# -rw-rw---- 1 kalavatt 598K Dec 1 09:42 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor_fastqc.html -# -rw-rw---- 1 kalavatt 388K Dec 1 09:42 mistake.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor_fastqc.zip -# -rw-rw---- 1 kalavatt 598K Dec 1 09:42 mistake.unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor_fastqc.html -# -rw-rw---- 1 kalavatt 390K Dec 1 09:42 mistake.unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor_fastqc.zip -# -rw-rw---- 1 kalavatt 595K Dec 1 09:42 mistake.unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor_fastqc.html -# -rw-rw---- 1 kalavatt 383K Dec 1 09:42 mistake.unfixrm.5781_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor_fastqc.zip -# -rw-rw---- 1 kalavatt 597K Dec 1 09:42 mistake.unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor_fastqc.html -# -rw-rw---- 1 kalavatt 391K Dec 1 09:42 mistake.unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.1.cor_fastqc.zip -# -rw-rw---- 1 kalavatt 600K Dec 1 09:42 mistake.unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor_fastqc.html -# -rw-rw---- 1 kalavatt 390K Dec 1 09:42 mistake.unfixrm.5782_Q_IN_mergedAligned.sortedByCoord.out.sc_all.2.cor_fastqc.zip -``` -
-
diff --git a/results/2022-1201/AG_breakdown-annotation-munging-etc.md b/results/2022-1201/AG_breakdown-annotation-munging-etc.md deleted file mode 100644 index 194da78..0000000 --- a/results/2022-1201/AG_breakdown-annotation-munging-etc.md +++ /dev/null @@ -1,1084 +0,0 @@ - -`#AG_breakdown-annotation-munging-etc.md` -
-
- -
-Table of contents - - -1. [Email: *Notes on Trinity*](#email-notes-on-trinity) - 1. [Alison → me, 2022-1202, 1658](#alison-%E2%86%92-me-2022-1202-1658) - 1. [Files](#files) - 1. [me → Alison, 2022-1202, 1726](#me-%E2%86%92-alison-2022-1202-1726) - 1. [Alison → me, 2022-1202, 1749](#alison-%E2%86%92-me-2022-1202-1749) - 1. [File](#file) - 1. [me → Alison, 2022-1203, 0910](#me-%E2%86%92-alison-2022-1203-0910) - 1. [me → Alison, 2022-1228, 1012](#me-%E2%86%92-alison-2022-1228-1012) - 1. [me → Alison, 2022-1228, 1227](#me-%E2%86%92-alison-2022-1228-1227) - 1. [Alison → me, 2022-1229, 1344](#alison-%E2%86%92-me-2022-1229-1344) -1. [On `bedtools` and `gffcompare`](#on-bedtools-and-gffcompare) - 1. [`bedtools intersect -h`](#bedtools-intersect--h) - 1. [`GffCompare`](#gffcompare) - 1. [`gffcompare -h`](#gffcompare--h) - 1. [Description of `GffCompare`](#description-of-gffcompare) - 1. [Methods: Implementation, ¶5](#methods-implementation-%C2%B65) - 1. [Methods: Implementation, ¶6](#methods-implementation-%C2%B66) - 1. [Methods: Implementation, ¶7](#methods-implementation-%C2%B67) - 1. [Use cases: Basic usage examples of the `GffRead` utility](#use-cases-basic-usage-examples-of-the-gffread-utility) - 1. [Use cases: Basic usage example of the `GffCompare` utility](#use-cases-basic-usage-example-of-the-gffcompare-utility) - 1. [¶1](#%C2%B61) - 1. [Use cases: Transcript accuracy estimation with `GffCompare`](#use-cases-transcript-accuracy-estimation-with-gffcompare) - 1. [¶1](#%C2%B61-1) - 1. [¶2](#%C2%B62) - 1. [¶3](#%C2%B63) - 1. [Use cases: Merging structurally equivalent transcripts with `GffCompare`](#use-cases-merging-structurally-equivalent-transcripts-with-gffcompare) - 1. [¶1](#%C2%B61-2) - 1. [¶2: *The "super-locus" concept*](#%C2%B62-the-super-locus-concept) - 1. [Use cases: Annotating transcripts with `GffCompare`](#use-cases-annotating-transcripts-with-gffcompare) - 1. [¶1](#%C2%B61-3) - 1. [Use cases: Tracking transcripts with `GffCompare`](#use-cases-tracking-transcripts-with-gffcompare) - 1. [¶1](#%C2%B61-4) - 1. [¶2](#%C2%B62-1) - 1. [Use cases: Overlap classification for a large set of transcripts with `TrMap`](#use-cases-overlap-classification-for-a-large-set-of-transcripts-with-trmap) - 1. [`bedtools slop -h`](#bedtools-slop--h) - 1. [`bedtools subtract -h`](#bedtools-subtract--h) -1. [Breaking down the `bedtools_comparison` document](#breaking-down-the-bedtools_comparison-document) - 1. [*"...lets do a comparison between `merged_final` and `combined`..."*](#lets-do-a-comparison-between-merged_final-and-combined) - 1. [Find entries that have no overlap with known transcripts](#find-entries-that-have-no-overlap-with-known-transcripts) - 1. [Find entries that have no overlap with known transcripts, paying attention to strandedness](#find-entries-that-have-no-overlap-with-known-transcripts-paying-attention-to-strandedness) - 1. [Discard intron-redundant transcript fragments with `gffcompare`](#discard-intron-redundant-transcript-fragments-with-gffcompare) - 1. [*"Let’s compare between mRNA and annotations"*](#let%E2%80%99s-compare-between-mrna-and-annotations) - 1. [*"How many antisense transcripts?"*](#how-many-antisense-transcripts) - 1. [Using the online `bedtools intersect` documentation to understand the above call](#using-the-online-bedtools-intersect-documentation-to-understand-the-above-call) - 1. [`-s` Enforcing same strandedness](#-s-enforcing-same-strandedness) - 1. [`-S` Enforcing opposite "strandedness"](#-s-enforcing-opposite-strandedness) - 1. [`-wa` Reporting the original A feature](#-wa-reporting-the-original-a-feature) - 1. [`-f` Requiring a minimal overlap fraction](#-f-requiring-a-minimal-overlap-fraction) - 1. [Additional commands after *"How many antisense transcripts?"*](#additional-commands-after-how-many-antisense-transcripts) - 1. [*"How many transcripts are both antisense and extended?"*](#how-many-transcripts-are-both-antisense-and-extended) - 1. [*"How many transcripts are partial genes?"*](#how-many-transcripts-are-partial-genes) - 1. [*"How many transcripts are completely intergenic?"*](#how-many-transcripts-are-completely-intergenic) - 1. [*"Make a gtf to determine if extension is 3’ or 5’"*](#make-a-gtf-to-determine-if-extension-is-3%E2%80%99-or-5%E2%80%99) - 1. [*"Bedtools subtract"*](#bedtools-subtract) - 1. [Sussing things out from the online documentation for `bedtools subtract`](#sussing-things-out-from-the-online-documentation-for-bedtools-subtract) - 1. [-f Requiring a minimal overlap fraction before subtracting](#-f-requiring-a-minimal-overlap-fraction-before-subtracting) - 1. [-s Enforcing same “strandedness”](#-s-enforcing-same-%E2%80%9Cstrandedness%E2%80%9D) - 1. [-S Enforcing opposite “strandedness”](#-s-enforcing-opposite-%E2%80%9Cstrandedness%E2%80%9D) - - -
-
-
- - -## Email: *Notes on Trinity* -*See additional entries, etc. for this email chain in [`AG_emails-notes.md`](./AG_emails-notes.md)* - -### Alison → me, 2022-1202, 1658 -Hi Kris - - -Please let me know if you need more information or clarification. Hopefully I have addressed a lot of your questions and concerns with these two documents. FYI the word document needs to be in "web layout" under the view tab to look correct. - -Have a great weekend! - -Alison - - -#### Files -[AG.2022-1202.notes_on_trinity.1.docx](./notebook/AG.2022-1202.notes_on_trinity.1.docx) -[AG.2022-1202.notes_on_trinity.2.bedtools_comparison.pdf](./notebook/AG.2022-1202.notes_on_trinity.2.bedtools_comparison.pdf) - - -### me → Alison, 2022-1202, 1726 -Thank you, Alison! I will check it soon. Have a great weekend! - --Kris - - -### Alison → me, 2022-1202, 1749 -Awesome! I also went ahead and tried the right vs wrong analysis of the original annotation. Those notes are attached to this email. I saved the IGV regions for this in the shared folder within my Tsukiyama lab folder, so you can open these up for yourself if you want. All counting was rough and quick so numerical values might be inexact. - -Alison - - -#### File -[AG.2022-1202.notes_on_trinity.3.right_vs_wrong_analysis.docx](./notebook/AG.2022-1202.notes_on_trinity.3.right_vs_wrong_analysis.docx) - - -### me → Alison, 2022-1203, 0910 -This is great, thank you! Sometime next week, let's get you set up with a GitHub account so that you can get quick access to my work and notes for the project. No rush on this though—just sent you the GitHub invite because it had been on my mind. - --Kris - - -### me → Alison, 2022-1228, 1012 -Happy holidays! Do you have screenshots I can look at for the regions in this file (`right vs wrong analysis.docx`)? - -Not really finding them in `/home/kalavatt/tsukiyamalab/alisong` - -No rush on this; just trying to learn things. - -Thanks, -Kris - -```txt -❯ ls -lhaFGf -total 502M --rw-rw---- 1 agreenla 190M Feb 9 2013 83Q_Jan_Norm.sgr --rw-rw---- 1 agreenla 285M Feb 9 2013 81log_Jan_Norm.sgr --rw-rw-r-- 1 sswygert 3.2M Aug 22 2018 PolII_Q_rrp6_RPKM.bw --rw-rw-r-- 1 sswygert 3.1M Jun 7 2019 PolII_Q_RPKM.bw -drwxrws--- 3 agreenla 88 Oct 7 2019 ChIP/ -drwxrws--- 2 ccucinot 379 Oct 11 2019 scripts_from_christine/ --rw-rw---- 1 agreenla 714K Dec 10 2019 191209_trf4depletion.zip -drwxrws--- 3 agreenla 85 Jan 3 2020 'strain pics'/ -drwxrws--- 6 agreenla 474 Jan 3 2020 westerns/ --rw-rw---- 1 agreenla 11M Jan 8 2020 'lady is a tramp.pptx' --rw-rw---- 1 agreenla 12K Mar 4 2020 '4tU barcodes and concentration info.xlsx' -drwxrws--- 4 ccucinot 202 Apr 1 2020 genomes_from_christine/ --rw-rw---- 1 agreenla 2.9K Apr 1 2020 'Rna_scripts!.zip' -drwxrws--- 2 agreenla 185 Apr 5 2020 Rna_scripts/ -drwxrws--- 2 agreenla 694 Jun 23 2020 'western quant'/ -drwxrws--- 3 agreenla 92 Jul 13 2020 'RNA sequencing'/ -drwxrws--- 2 agreenla 41 Aug 4 2020 scripts/ -drwxrws--- 7 agreenla 220 Oct 23 2020 jordancopy/ -drwxrws--- 2 agreenla 199 Dec 21 2020 RSEM_reference/ --rw-rw---- 1 agreenla 7.2K Dec 22 2020 percent_noncoding.pzfx -drwxrws--- 2 agreenla 478 Feb 17 2021 computational_notes/ --rw-rw---- 1 agreenla 17K Feb 17 2021 ChIP-seq_Data-Processing_KCAB_AGedit.docx -drwxrws--- 6 agreenla 1.2K Mar 8 2021 gmap_genome/ -drwxrws--- 2 agreenla 0 Apr 14 2021 combine_Q_bams_Alison_Jordan/ -drwxrws--- 2 agreenla 696 Apr 26 2021 scripts_to_send_matt/ --rw-rw---- 1 agreenla 14K May 17 2021 Research_Summary_2021.docx -drwxrws--- 2 agreenla 369 May 17 2021 'scripts I stole from christine'/ -drwxrws--- 2 agreenla 294 Jul 1 2021 0001144_01/ -drwxrws--- 2 dhunt 559 Jul 15 2021 'Alison Microscope 07142021'/ -drwxrws--- 3 agreenla 992 Jul 23 2021 Kit_comparison/ -drwxrws--- 2 agreenla 110 Jul 29 2021 23S/ -drwxrws--- 3 agreenla 190 Jul 29 2021 20S/ -drwxrws--- 42 agreenla 2.0K Jul 29 2021 narnavirus/ -drwxrws--- 2 agreenla 1.7K Jul 30 2021 dead_or_alive/ -drwxrws--- 19 agreenla 1.9K Aug 3 2021 20210217_RNAseq/ -drwxrws--- 3 agreenla 120 Aug 31 2021 tRAX/ -drwxrws--- 3 agreenla 40 Sep 1 2021 Nanodrop/ --rw-rw---- 1 agreenla 48K Dec 1 2021 comittee_summary_fall2021_Greenlaw.docx --rw-rw---- 1 agreenla 162 Dec 1 2021 '~$Classes To-Do List.docx' --rw-rw---- 1 agreenla 16K Dec 1 2021 '3 Classes To-Do List.docx' -drwxrws--- 2 agreenla 0 Dec 14 2021 fastq_dump/ --rw-rw---- 1 ccucinot 23K Dec 29 2021 ExampleTimeCourseStrategy.docx --rw-rw---- 1 agreenla 13K Feb 10 2022 epic_biosketch.docx --rw-rw---- 1 agreenla 162 Feb 11 2022 '~$ic_biosketch.docx' -drwxrws--- 4 agreenla 653 Mar 10 2022 Jeffdata/ --rw-rw---- 1 agreenla 162 Mar 29 2022 '~$ampleTimeCourseStrategy.docx' --rw-rw---- 1 agreenla 162 May 16 2022 '~$mittee_summary_fall2021_Greenlaw.docx' -drwxrws--- 4 agreenla 172 Jun 15 2022 western_analysis/ --rw-rw---- 1 agreenla 2.3M Sep 15 19:56 ResearchStatement_CC5_AGedits.docx -drwxrws--- 7 agreenla 703 Sep 29 18:44 TRF4_SSRNA_April2022/ -drwxrws--- 2 agreenla 2.5K Oct 3 17:15 excel/ -drwxrws--- 5 agreenla 224 Oct 20 18:50 rotation/ -drwxrws--- 11 agreenla 413 Nov 1 10:50 WTQvsG1/ -drwxrws--- 3 agreenla 3.2K Dec 8 16:01 protocols/ -drwxrws--- 2 agreenla 2.1K Dec 12 14:47 'APE files + primers'/ -drwxrws--- 4 agreenla 56 Dec 12 14:47 20210625_RNAseq/ -drwxrws--- 2 agreenla 3.2K Dec 12 14:47 gel_doc_backup/ -drwxrws--- 3 agreenla 1.8K Dec 12 14:47 'Q entry yeild'/ -drwxrws--- 2 agreenla 142 Dec 12 14:47 'Rna_scripts!'/ -drwxrws--- 6 ccucinot 96 Dec 12 14:47 FACS/ -drwxrws--- 7 agreenla 154 Dec 12 14:47 old_analysis/ -drwxrws--- 3 agreenla 491 Dec 12 14:47 tRNA-read-mapping-master/ -drwxrws--- 4 agreenla 4.0K Dec 19 17:11 powerpoints/ -drwxrws--- 5 agreenla 811 Dec 21 12:31 Nab3_Nrd1_Depletion/ -drwxrws--- 4 agreenla 905 Dec 21 12:46 rtr1_rrp6_wt/ -drwxrws--- 9 kalavatt 320 Dec 22 12:14 assess_transcriptome_assemblies/ -drwxrwsr-x 48 arepetto 1.7K Dec 28 10:03 ../ -drwxrws--- 49 agreenla 2.4K Dec 28 10:03 ./ -drwxrws--- 4 ccucinot 1.2K Dec 28 10:04 annotation_files/ -``` - - -### me → Alison, 2022-1228, 1227 -I'm working through `BEDTOOLS COMPARISON.pdf`: can you help me understand a few things? - -What is "`Combined.gtf`" and "`Merge_downloaded_gtf`"? How were they obtained? - -What does this mean: "Flattened contained isoforms..." (sixth line of the first page)? - -What is "`downloadable_collapsed.gtf`"? - -Where or how did you get "`mRNAonly.gtf`"? - -Thanks, and no rush at all, -Kris - - -### Alison → me, 2022-1229, 1344 -Hi Kris - -I am away from my computer today but I can hopefully send some more clarification tomorrow. - -In the meantime - `combined.gtf` is a bunch of yeast annotations from different sources. Christine gave it to me and she got it from someone is her grad school lab. `mRNAonly.gtf` was made by using awk to filter only the mRNA from `combined.gtf`. - -I don't know the exact documents you are referring to without being able to go back and look, but anything with the word downloaded was downloaded from google docs which is where I did all the hand curations on trinity. - -Alison -
-
- - -## On `bedtools` and `gffcompare` - -### `bedtools intersect -h` -```txt -❯ bedtools intersect -h - -Tool: bedtools intersect (aka intersectBed) -Version: v2.30.0 -Summary: Report overlaps between two feature files. - -Usage: bedtools intersect [OPTIONS] -a -b - - Note: -b may be followed with multiple databases and/or - wildcard (*) character(s). -Options: - -wa Write the original entry in A for each overlap. - - -wb Write the original entry in B for each overlap. - - Useful for knowing _what_ A overlaps. Restricted by -f and -r. - - -loj Perform a "left outer join". That is, for each feature in A - report each overlap with B. If no overlaps are found, - report a NULL feature for B. - - -wo Write the original A and B entries plus the number of base - pairs of overlap between the two features. - - Overlaps restricted by -f and -r. - Only A features with overlap are reported. - - -wao Write the original A and B entries plus the number of base - pairs of overlap between the two features. - - Overlapping features restricted by -f and -r. - However, A features w/o overlap are also reported - with a NULL B feature and overlap = 0. - - -u Write the original A entry _once_ if _any_ overlaps found in B. - - In other words, just report the fact >=1 hit was found. - - Overlaps restricted by -f and -r. - - -c For each entry in A, report the number of overlaps with B. - - Reports 0 for A entries that have no overlap with B. - - Overlaps restricted by -f, -F, -r, and -s. - - -C For each entry in A, separately report the number of - - overlaps with each B file on a distinct line. - - Reports 0 for A entries that have no overlap with B. - - Overlaps restricted by -f, -F, -r, and -s. - - -v Only report those entries in A that have _no overlaps_ with B. - - Similar to "grep -v" (an homage). - - -ubam Write uncompressed BAM output. Default writes compressed BAM. - - -s Require same strandedness. That is, only report hits in B - that overlap A on the _same_ strand. - - By default, overlaps are reported without respect to strand. - - -S Require different strandedness. That is, only report hits in B - that overlap A on the _opposite_ strand. - - By default, overlaps are reported without respect to strand. - - -f Minimum overlap required as a fraction of A. - - Default is 1E-9 (i.e., 1bp). - - FLOAT (e.g. 0.50) - - -F Minimum overlap required as a fraction of B. - - Default is 1E-9 (i.e., 1bp). - - FLOAT (e.g. 0.50) - - -r Require that the fraction overlap be reciprocal for A AND B. - - In other words, if -f is 0.90 and -r is used, this requires - that B overlap 90% of A and A _also_ overlaps 90% of B. - - -e Require that the minimum fraction be satisfied for A OR B. - - In other words, if -e is used with -f 0.90 and -F 0.10 this requires - that either 90% of A is covered OR 10% of B is covered. - Without -e, both fractions would have to be satisfied. - - -split Treat "split" BAM or BED12 entries as distinct BED intervals. - - -g Provide a genome file to enforce consistent chromosome sort order - across input files. Only applies when used with -sorted option. - - -nonamecheck For sorted data, don't throw an error if the file has different naming conventions - for the same chromosome. ex. "chr1" vs "chr01". - - -sorted Use the "chromsweep" algorithm for sorted (-k1,1 -k2,2n) input. - - -names When using multiple databases, provide an alias for each that - will appear instead of a fileId when also printing the DB record. - - -filenames When using multiple databases, show each complete filename - instead of a fileId when also printing the DB record. - - -sortout When using multiple databases, sort the output DB hits - for each record. - - -bed If using BAM input, write output as BED. - - -header Print the header from the A file prior to results. - - -nobuf Disable buffered output. Using this option will cause each line - of output to be printed as it is generated, rather than saved - in a buffer. This will make printing large output files - noticeably slower, but can be useful in conjunction with - other software tools and scripts that need to process one - line of bedtools output at a time. - - -iobuf Specify amount of memory to use for input buffer. - Takes an integer argument. Optional suffixes K/M/G supported. - Note: currently has no effect with compressed files. - -Notes: - (1) When a BAM file is used for the A file, the alignment is retained if overlaps exist, - and excluded if an overlap cannot be found. If multiple overlaps exist, they are not - reported, as we are only testing for one or more overlaps. -``` - - -### `GffCompare` - -#### `gffcompare -h` - -```txt -❯ gffcompare -h -gffcompare v0.11.2 ------------------------------ -Usage: -gffcompare [-r [-R]] [-T] [-V] [-s ] - [-o ] [-p ] - {-i | [ .. ]} - - GffCompare provides classification and reference annotation mapping and - matching statistics for RNA-Seq assemblies (transfrags) or other generic - GFF/GTF files. - GffCompare also clusters and tracks transcripts across multiple GFF/GTF - files (samples), writing matching transcripts (identical intron chains) into - .tracking, and a GTF file .combined.gtf which - contains a nonredundant set of transcripts across all input files (with - a single representative transfrag chosen for each clique of matching transfrags - across samples). - - Options: - -v display gffcompare version (also --version) - -i provide a text file with a list of (query) GTF files to process instead - of expecting them as command line arguments (useful when a large number - of GTF files should be processed) - - -r reference annotation file (GTF/GFF) - --strict-match : the match code '=' is only assigned when all exon boundaries - match; code '~' is assigned for intron chain match or single-exon - - -R for -r option, consider only the reference transcripts that - overlap any of the input transfrags (Sn correction) - -Q for -r option, consider only the input transcripts that - overlap any of the reference transcripts (Precision correction); - (Warning: this will discard all "novel" loci!) - -M discard (ignore) single-exon transfrags and reference transcripts - -N discard (ignore) single-exon reference transcripts - -D discard "duplicate" query transfrags (i.e. those with the same - intron chain) within a single sample (disable "annotation" mode) - -S like -D, but stricter duplicate checking: only discard matching query - or reference transcripts (same intron chain) if their boundaries are fully - contained within other, larger or identical transfrags; if --strict-match - is also given, exact matching of all exon boundaries is required - --no-merge : disable close-exon merging (default: merge exons separated by - "introns" shorter than 5 bases - - -s path to genome sequences (optional); this can be either a multi-FASTA - file or a directory containing single-fasta files (one for each contig); - repeats must be soft-masked (lower case) in order to be able to classify - transfrags as repeats - - -T do not generate .tmap and .refmap files for each input file - -e max. distance (range) allowed from free ends of terminal exons of - reference transcripts when assessing exon accuracy (100) - -d max. distance (range) for grouping transcript start sites (100) - -V verbose processing mode (also shows GFF parser warnings) - --chr-stats: the .stats file will show summary and accuracy data - for each reference contig/chromosome separately - --debug : enables -V and generates additional files: - .Q_discarded.lst, .missed_introns.gff, - .R_missed.lst - -Options for the combined GTF output file: - -p the name prefix to use for consensus transcripts in the - .combined.gtf file (default: 'TCONS') - -C discard matching and "contained" transfrags in the GTF output - (i.e. collapse intron-redundant transfrags across all query files) - -A like -C but does not discard intron-redundant transfrags if they start - with a different 5' exon (keep alternate TSS) - -X like -C but also discard contained transfrags if transfrag ends stick out - within the container's introns - -K for -C/-A/-X, do NOT discard any redundant transfrag matching a reference -``` - - -#### Description of `GffCompare` -*The below is taken from the F1000Research paper [here](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7222033/)* - -##### Methods: Implementation, ¶5 -GffCompare is a generic, standalone tool for merging and tracking transcript structures across multiple samples and comparing them to a reference annotation. ... GffCompare has the following main functions: -1. merge structurally equivalent transcripts and transcript fragments (transfrags) across multiple samples; -2. assess the accuracy of the assembled transcripts from an RNA-Seq sample by comparing it to known annotation; and -3. track, annotate, and report all structurally distinct transfrags across multiple samples. - - -##### Methods: Implementation, ¶6 -The last two purposes require the user to provide a known reference annotation file that GffCompare then uses to classify all the transcripts in the input samples according to the reference transcript that they most closely overlap (Figure 1). To assess the accuracy of transcriptome assemblies, GffCompare reports several accuracy metrics previously employed for gene prediction evaluation (Burset, Guigó, *Genomics* 1996). These metrics include sensitivity and precision as well as the number of novel or missed features, and the metrics are computed at various levels (base, exon, intron chain, transcript, or locus). More details about how to obtain the different reports provided by GffCompare can be found in the *Use Cases* section. - -drawing -Figure 1. Transcript classification codes based on their relationship to reference transcripts, as generated by GffCompare. Reference exons and transcripts are shown in black, transcripts to be classified are shown in blue, and hashed regions represent repeated regions in the genome. For example, the transcript in blue on the uppermost left panel is labeled "=" because all of its introns precisely match the annotation in black. - - -##### Methods: Implementation, ¶7 -Some pipelines can produce a very large number of transcripts that need to be evaluated; e.g. when merging the transcript assemblies from tens or hundreds of RNA-Seq experiments. Because GffCompare always loads the entire transcript data into memory for clustering, running GffCompare on such large GTF/GFF files could be slow and memory intensive. One may be interested only in how these transcripts overlap the reference annotation, and then only wish to further analyze those transcripts that have specific types of overlaps with the reference annotation transcripts. GffCompare also only produces the best match of a transcript to a reference annotation, but for each transcript we might want to know all possible reference matches. In order to address these needs, we built TrMap ("Transcript vs. reference Mapping"), a program that we distribute along with GffCompare and that was designed to avoid using a large amount of memory by streaming the input transcript data. TrMap first loads the reference annotation into an interval tree data structure 29, and then for each query transcript it reports all the reference transcripts that overlap it, along with their overlap classification codes. These are the same classification codes described in Figure 1, with the exception of codes p, r, and u which are reserved for transcripts that do not overlap reference transcripts and represent transcripts that are single exon and nearby genes (p), repeats outside of genes (r), and intergenic (u). - - -##### Use cases: Basic usage examples of the `GffRead` utility - -##### Use cases: Basic usage example of the `GffCompare` utility - -###### ¶1 -The program GffCompare can be used to compare, merge, annotate and estimate accuracy of one or more GTF/GFF files (the "query" files), when compared with a reference annotation (also provided as GTF/GFF). A basic command line to compare a list of GTF files to a reference annotation file is: - -```bash -gffcompare -r annotation.gff transcripts.gtf -``` -The reference annotation is specified in the `annotation.gff` file and `transcripts.gtf` represents the query file (more than one query file can be provided). Unless the `-o` option was provided, the output will be found in multiple files with the prefix "gffcmp." A list of the more important options for the GffCompare utility is provided in [Table 3](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7222033/table/T3/?report=objectonly). - - -##### Use cases: Transcript accuracy estimation with `GffCompare` - -###### ¶1 -GffCompare can be used to assess the accuracy of transcriptome assemblies produced by programs like StringTie with respect to a known reference annotation. To this end, GffCompare reports various statistics related to the accuracy of the input transcripts compared to the reference annotation in the `.stats` file. Among these statistics are sensitivity and precision values computed at various levels (base, exon, intron chain, transcript, locus), which are calculated as: - -```txt -Sensitivity = TP/(TP + FN) -Precision = TP/(TP + FP) -``` -where TP stands for "true positives", or query features (bases, exons, introns, transcripts, etc.) that agree with the corresponding reference annotation features; FN means "false negatives", i.e. features that are found in the reference annotation but are not present in the input data; FP ("false positives") are features present in the input data but not confirmed by any reference annotation data. Notice that FP + TP amounts to the whole input set of query features in the input file. If multiple query GTF/GFF files are given as input, these metrics are computed separately for each sample. - - -###### ¶2 -*Sensitivity* and *Precision* values are estimated at various levels, which are largely an increasingly stringent way of evaluating the accuracy/correctness of a set of predicted transcripts (*transfrags*), when compared to the reference annotation provided with the `-r` option. The six different levels that GffCompare uses are described below: - -1. *Base level.* At the base level, TP represents the number of exon bases that are reported at the same coordinate on both the query transcripts and any reference transcript, FN is the number of bases in reference data exons that are not covered at all by any of the query exons, and FP is the number of bases which are covered by predicted transcripts' exons but not covered by any reference transcript exons. -2. *Exon level.* We define the TP, FN, and FP values at the exon level similar to the base level, but now the unit of comparison is the exon interval on the genome, i.e., if an exon of the predicted transcript overlaps and matches the boundaries of a reference transcript exon, then it is counted as a TP. -3. *Intron Level.* Intron intervals are the units that are matched at the intron level, therefore each intron of the predicted transcript is checked against any introns of the reference transcripts in the same region and if there is one with the same exact start-end coordinates, it is counted as a TP. -4. *Intron chain level.* At this level we count as a TP any query transcript for which all of its introns can be found, with the same exact intron coordinates as in a reference transcript that has the same number of introns. Matching all the introns at this level implies that all the internal exons also match, but this might not be true for the external boundaries of the terminal exons. -5. *Transcript level.* Note that intron chain level values are calculated only by looking at multi-exon transcripts, so it completely ignores the single-exon transcripts, which can be quite numerous in a RNA-Seq experiment (possibly due to a lot of transcriptional and alignment noise). The transcript level considers single-exons as well. A TP at this level is defined as a full exon chain match between the predicted transcript and a reference transcript, where all internal exons match and the outer boundaries of the terminal query exons can only slightly differ from the reference exons (with at most 100 bases by default). Also GffCompare considers single-exon transcripts as matching an overlapping single-exon reference transcript if there is a significant overlap between the two (more than 80% of the longer transcript by default). -6. *Locus level.* At this level GffCompare considers that an observed locus, defined as a cluster of exon-overlapping transcripts, matches a similarly built reference locus if at least one predicted transcript has a transcript level match with a reference transcript in the corresponding reference locus. - - -###### ¶3 -Other statistics reported by GffCompare are the number of missed or novel exons, missed or novel introns and missed or novel loci. Note that in order to properly evaluate precision and sensitivity when comparing two sets of transcripts, special care must be taken for duplicated (or redundant) entries within each set. GffCompare uses different levels of stringency of what to consider duplicated transcripts, depending on the option given in its input (see options `-D`, `-S`, `-C`, `-A`, `-X` in Table 3). - - -##### Use cases: Merging structurally equivalent transcripts with `GffCompare` - -###### ¶1 -When multiple input GTF/GFF files are provided, GffCompare reports a GTF file named .combined.gtf containing the union of all transfrags in each sample. If a transfrag with the same exact intron chain is present in both samples, it is thus reported only once in the output file. - - -###### ¶2: *The "super-locus" concept* -A super-locus is a region of the genome where predicted transcripts and reference transcripts get clustered together by exon overlaps. When multiple GFF files are provided as input to GffCompare, this clustering is performed across all the input files. Due to the transitive nature of this clustering, these super-loci can occasionally get very large, sometimes merging a few distinct reference gene regions together, especially if there is a lot of transcription or alignment noise around the individual gene regions. For each super-locus, GffCompare assigns a unique identifier with the *XLOC_* prefix. - - -##### Use cases: Annotating transcripts with `GffCompare` - -###### ¶1 -One can run GffCompare on a single GTF/GFF input file using with the `-r` option (which provides a reference annotation), and without any specific options to remove redundant transfrags (such as the `-D`, `-S`, `-C`, `-A`, `-X` options) to produce a GTF file called `.annotated.gtf` that contains all the input transcripts annotated with several additional attributes: `xloc`, `tss_id`, `cmp_ref`, and `class_code`. The `xloc` attribute specifies the *super-locus* a specific transcript belongs to. The `tss_id` attribute uniquely identifies the transcription start for that transcipt, and using this value the user can quickly see which transcripts use the same transcription start, or how many different transcription starts are present in a locus. The `cmp_ref` gives the closest reference transcript (where applicable), while the relationship to this reference transcript is given by the `class_code` attribute. The possible values for the `class_code` attribute are listed in [Table 4](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7222033/table/T4/). -```txt -Code Relationship to reference transcript -= complete, exact intron chain match -c contained in reference transcript (intron compatible) -k contains reference transcript (reverse containment) -m retained intron(s) compared to reference, full intron chain match everywhere else -n completely overlaps intron from reference transcript, partial or no intron chain match - everywhere else -j multi-exon with at least one junction match -e single exon that partially covers an intron from reference -o other same strand overlap with reference exons -s intron match on the opposite strand (likely a mapping error) -x exonic overlap on the opposite strand -i fully contained within a reference intron -y contains a reference within its intron(s) -p possible polymerase run-on (close to reference but no overlap) -r repeat (at least 50% bases are soft-masked) -u none of the above (unknown, intergenic) -``` - - -##### Use cases: Tracking transcripts with `GffCompare` - -###### ¶1 -GffCompare can also be used to track all transcripts that are structurally equivalent among the different input files. GffCompare considers transcripts matching (or structurally equivalent) if all their introns are identical. Note that matching transcripts are allowed to differ on the length of the first and last exons, since these lengths can usually vary across samples for the same biological transcript. A list of all matching transcripts is reported in a file called `.tracking` in which each row represents a transcript. The first column in this file represents a unique id assigned to that transcripts. The second file represents the super-locus that contains that transcript. If GffCompare was run with the `-r` option, the 3rd and 4th columns contain the reference annotation transcript that was found to be closest to the transcript and the classification code (as specified by [Table 4](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7222033/table/T4/)) that specifies the relationship between these two transcripts, respectively. The rest of the columns show the corresponding transcript from each input file in order. An example and a brief description for each column are given in [Table 5](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7222033/table/T5/). - - -###### ¶2 -In order to quickly see which reference transcripts match which transcripts from a sample file, two other files, called `.. refmap` and `..tmap` are also created for each query ``. The `..refmap` file is a tab-delimited file that has a row for each reference transcript that either fully or partially matches a transcript from the given input file. Its columns are described in [Table 6](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7222033/table/T6/). Conversely, the `..tmap` file has a row for each input transcript, while the columns in this file (as detailed in [Table 7](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7222033/table/T7/)) describe the most closely matching reference transcript for that transcript. - - - -##### Use cases: Overlap classification for a large set of transcripts with `TrMap` -... - - -### `bedtools slop -h` -```txt -❯ bedtools slop -h - -Tool: bedtools slop (aka slopBed) -Version: v2.30.0 -Summary: Add requested base pairs of "slop" to each feature. - -Usage: bedtools slop [OPTIONS] -i -g [-b or (-l and -r)] - -Options: - -b Increase the BED/GFF/VCF entry -b base pairs in each direction. - - (Integer) or (Float, e.g. 0.1) if used with -pct. - - -l The number of base pairs to subtract from the start coordinate. - - (Integer) or (Float, e.g. 0.1) if used with -pct. - - -r The number of base pairs to add to the end coordinate. - - (Integer) or (Float, e.g. 0.1) if used with -pct. - - -s Define -l and -r based on strand. - E.g. if used, -l 500 for a negative-stranded feature, - it will add 500 bp downstream. Default = false. - - -pct Define -l and -r as a fraction of the feature's length. - E.g. if used on a 1000bp feature, -l 0.50, - will add 500 bp "upstream". Default = false. - - -header Print the header from the input file prior to results. - -Notes: - (1) Starts will be set to 0 if options would force it below 0. - (2) Ends will be set to the chromosome length if requested slop would - force it above the max chrom length. - (3) The genome file should tab delimited and structured as follows: - - - - For example, Human (hg19): - chr1 249250621 - chr2 243199373 - ... - chr18_gl000207_random 4262 - -Tips: - One can use the UCSC Genome Browser's MySQL database to extract - chromosome sizes. For example, H. sapiens: - - mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -e \ - "select chrom, size from hg19.chromInfo" > hg19.genome -``` - - -### `bedtools subtract -h` -```txt -bedtools subtract -h - -Tool: bedtools subtract (aka subtractBed) -Version: v2.30.0 -Summary: Removes the portion(s) of an interval that is overlapped - by another feature(s). - -Usage: bedtools subtract [OPTIONS] -a -b - -Options: - -A Remove entire feature if any overlap. That is, by default, - only subtract the portion of A that overlaps B. Here, if - any overlap is found (or -f amount), the entire feature is removed. - - -N Same as -A except when used with -f, the amount is the sum - of all features (not any single feature). - - -wb Write the original entry in B for each overlap. - - Useful for knowing _what_ A overlaps. Restricted by -f and -r. - - -wo Write the original A and B entries plus the number of base - pairs of overlap between the two features. - - Overlaps restricted by -f and -r. - Only A features with overlap are reported. - - -s Require same strandedness. That is, only report hits in B - that overlap A on the _same_ strand. - - By default, overlaps are reported without respect to strand. - - -S Require different strandedness. That is, only report hits in B - that overlap A on the _opposite_ strand. - - By default, overlaps are reported without respect to strand. - - -f Minimum overlap required as a fraction of A. - - Default is 1E-9 (i.e., 1bp). - - FLOAT (e.g. 0.50) - - -F Minimum overlap required as a fraction of B. - - Default is 1E-9 (i.e., 1bp). - - FLOAT (e.g. 0.50) - - -r Require that the fraction overlap be reciprocal for A AND B. - - In other words, if -f is 0.90 and -r is used, this requires - that B overlap 90% of A and A _also_ overlaps 90% of B. - - -e Require that the minimum fraction be satisfied for A OR B. - - In other words, if -e is used with -f 0.90 and -F 0.10 this requires - that either 90% of A is covered OR 10% of B is covered. - Without -e, both fractions would have to be satisfied. - - -split Treat "split" BAM or BED12 entries as distinct BED intervals. - - -g Provide a genome file to enforce consistent chromosome sort order - across input files. Only applies when used with -sorted option. - - -nonamecheck For sorted data, don't throw an error if the file has different naming conventions - for the same chromosome. ex. "chr1" vs "chr01". - - -sorted Use the "chromsweep" algorithm for sorted (-k1,1 -k2,2n) input. - - -bed If using BAM input, write output as BED. - - -header Print the header from the A file prior to results. - - -nobuf Disable buffered output. Using this option will cause each line - of output to be printed as it is generated, rather than saved - in a buffer. This will make printing large output files - noticeably slower, but can be useful in conjunction with - other software tools and scripts that need to process one - line of bedtools output at a time. - - -iobuf Specify amount of memory to use for input buffer. - Takes an integer argument. Optional suffixes K/M/G supported. - Note: currently has no effect with compressed files. -``` -
-
- - -## Breaking down the `bedtools_comparison` document - -### *"...lets do a comparison between `merged_final` and `combined`..."* - -#### Find entries that have no overlap with known transcripts -```bash -bedtools intersect -v -a downloadable_collapsed.gtf -b combined.gtf \ - > totally_unique.gtf -``` -- `-a ` - + `downloadable_collapsed.gtf` -- `-b ` - + `combined.gtf` -- `-v Only report those entries in A that have no overlaps with B.` - + That is, report only those entries in `downloadable_collapsed.gtf` that are not in `combined.gtf` -- `downloadable_collapsed.gtf`: Something AG did by hand? "...anything with the word downloaded was downloaded from google docs which is where I did all the hand curations on trinity." -- "`combined.gtf` is a bunch of yeast annotations from different sources. Christine gave it to me and she got it from someone is her grad school lab." - - -#### Find entries that have no overlap with known transcripts, paying attention to strandedness -```bash -bedtools intersect -v -s -a downloadable_collapsed.gtf -b combined.gtf \ - > totally_unique_stranded.gtf -``` -- `-a ` - + `downloadable_collapsed.gtf` -- `-b ` - + `combined.gtf` -- `-s Require same strandedness. That is, only report hits in B that overlap A on the same strand.` -- `-v Only report those entries in A that have no overlaps with B.` - + Thus, report only same-strand hits in `combined.gtf` (`-b`) that overlap `downloadable_collapsed.gtf` (`-a`) - - -#### Discard intron-redundant transcript fragments with `gffcompare` -```bash -gffcompare -C -o completely.unique totally_unique_stranded.gtf -``` -- `-C discard matching and "contained" transfrags in the GTF output (i.e., collapse intron-redundant transfrags across all query files)` -- `-o ` - - -### *"Let’s compare between mRNA and annotations"* -```bash -bedtools intersect -F 1 -s -wa -a downloadable_collapsed.gtf -b mRNAonly.gtf \ - > mRNA_overlap_completely.gtf -``` -- `-a ` - + `downloadable_collapsed.gtf` -- `-b ` - + `combined.gtf` -- `-F Minimum overlap required as a fraction of B.` - + `Default is 1E-9 (i.e., 1bp).` - + `FLOAT (e.g. 0.50)` - + `#QUESTION` What does a value of 1 mean here? 1000000000? -- `downloadable_collapsed.gtf`: "...anything with the word downloaded was downloaded from google docs which is where I did all the hand curations on trinity." -- "`mRNAonly.gtf` was made by using awk to filter only the mRNA from `combined.gtf`." -- `-wa`: force `bedtools intersect` to report the original "A" feature (`downloadable_collapsed.gtf`) when an overlap is found -- AG's notes - + "Must cover 100% of gene" - + "714 extended transcripts - but some genes double cause spliced" - - -### *"How many antisense transcripts?"* -```bash -bedtools intersect -F .3 -S -wa -a downloadable_collapsed.gtf -b mRNAonly.gtf \ - > Antisense_tomRNA_overlap_30p.gtf -``` -- `-a ` - + `downloadable_collapsed.gtf` -- `-b ` - + `combined.gtf` -- `-wa Write the original entry in A for each overlap.` -- `-F Minimum overlap required as a fraction of B.` - + `Default is 1E-9 (i.e., 1bp).` - + `FLOAT (e.g. 0.50)` - + A value of `.3`: 30% -- `-S Require different strandedness. That is, only report hits in B that overlap A on the _opposite_ strand.` - + `By default, overlaps are reported without respect to strand.` -- So, for any entry in `downloadable_collapsed.gtf` (`a`) that overlaps an entry in `mRNAonly.gtf` (`b`) on the opposite strand (`-S`) by a minimum of 30% (`-F .3`), write out the entire `downloadable_collapsed.gtf` (`a`) entry, i.e., not just the portion that overlaps - + enforce that overlaps be found on opposite strands (`-S`) - + restrict reported overlaps between "A" and "B" to cases where the feature in "A" overlaps at least 30% of the "B" feature (`-F .3`) - + report the original "A" feature when an overlap is found (`-wa`; i.e., not just the portion that overlaps "B") -- AG's notes - + "1804 antisense transcripts" - + "Probably an undercount" - - -#### Using the online `bedtools intersect` documentation to understand the above call -https://bedtools.readthedocs.io/en/latest/content/tools/intersect.html - - -##### `-s` Enforcing same strandedness -By default, bedtools intersect will report overlaps between features even if the features are on opposite strands. However, if strand information is present in both BED files and the "`-s`" option is used, overlaps will only be reported when features are on the same strand. - -For example (note that the first B entry is not reported): -```bash -$ cat A.bed -chr1 100 200 a1 100 + - -$ cat B.bed -chr1 130 201 b1 100 - -chr1 132 203 b2 100 + - -$ bedtools intersect -a A.bed -b B.bed -wa -wb -s -chr1 100 200 a1 100 + chr1 132 203 b2 100 + -``` - - -##### `-S` Enforcing opposite "strandedness" -The `-s` option enforces that overlaps be on the same strand. In some cases, you may want to enforce that overlaps be found on opposite strands. In this, case use the `-S` option. - -For example: -```bash -$ cat A.bed -chr1 100 200 a1 100 + - -$ cat B.bed -chr1 130 201 b1 100 - -chr1 132 203 b2 100 + - -$ bedtools intersect -a A.bed -b B.bed -wa -wb -S -chr1 100 200 a1 100 + chr1 130 201 b1 100 - -``` - - -##### `-wa` Reporting the original A feature -Instead, one can force `bedtools intersect` to report the original "A" feature when an overlap is found. As shown below, the entire "A" feature is reported, not just the portion that overlaps with the "B" feature. - -For example: -```bash -$ cat A.bed -chr1 10 20 -chr1 30 40 - -$ cat B.bed -chr1 15 20 - -$ bedtools intersect -a A.bed -b B.bed -wa -chr1 10 20 -``` - - -##### `-f` Requiring a minimal overlap fraction -By default, bedtools intersect will report an overlap between A and B so long as there is at least one base pair is overlapping. Yet sometimes you may want to restrict reported overlaps between A and B to cases where the feature in B overlaps at least X% (e.g., 50%) of the A feature. The `-f` option does exactly this. - -For example (note that the second B entry is not reported): -```bash -$ cat A.bed -chr1 100 200 - -$ cat B.bed -chr1 130 201 -chr1 180 220 - -$ bedtools intersect -a A.bed -b B.bed -f 0.50 -wa -wb -chr1 100 200 chr1 130 201 -``` - -*From the `bedtools intersect` command-line help* -```txt - -f Minimum overlap required as a fraction of A. - - Default is 1E-9 (i.e., 1bp). - - FLOAT (e.g. 0.50) - - -F Minimum overlap required as a fraction of B. - - Default is 1E-9 (i.e., 1bp). - - FLOAT (e.g. 0.50) -``` -So, `-F` does the same as `-f`, except the reported overlap is with respect to the file assigned to `-b` - - -### Additional commands after *"How many antisense transcripts?"* -Break down what is going on here - -```bash -bedtools intersect -F .2 -S -wa -a downloadable_collapsed.gtf -b mRNAonly.gtf \ - > Antisense_tomRNA_overlap_20p.gtf -``` -- For any entry in `downloadable_collapsed.gtf` (`a`) that overlaps an entry in `mRNAonly.gtf` (`b`) on the opposite strand (`-S`) by a minimum of 20% (`-F .2`), write out the entire `downloadable_collapsed.gtf` (`a`) entry, i.e., not just the portion that overlaps - - -```bash -gffcompare -C -o antisense_20 Antisense_tomRNA_overlap_20p.gtf -``` -- Collapse redundant entries in `Antisense_tomRNA_overlap_20p.gtf` - + `-C discard matching and "contained" transfrags in the GTF output (i.e., collapse intron-redundant transfrags across all query files)` - + `-o ` - -```bash -bedtools intersect -F .4 -S -wa -a downloadable_collapsed.gtf -b mRNAonly.gtf \ - > Antisense_tomRNA_overlap_40p.gtf -``` -- For any entry in `downloadable_collapsed.gtf` (`a`) that overlaps an entry in `mRNAonly.gtf` (`b`) on the opposite strand (`-S`) by a minimum of 40% (`-F .4`), write out the entire `downloadable_collapsed.gtf` (`a`) entry, i.e., not just the portion that overlaps - -```bash -gffcompare -C -o antisense_40 Antisense_tomRNA_overlap_40p.gtf -``` -- Collapse redundant entries in `Antisense_tomRNA_overlap_40p.gtf` - -```bash -gffcompare -C -o antisense_30 Antisense_tomRNA_overlap_30p.gtf -``` -- Collapse redundant entries in `Antisense_tomRNA_overlap_30p.gtf` - - -### *"How many transcripts are both antisense and extended?"* -```bash -bedtools intersect -F 1 -s -wa -a mRNA_overlap_completely.gtf -b Antisense_tomRNA_overlap_30p.gtf \ - > antisense_extended2.gtf -``` -- `-F 1`: Per AG, "Must cover 100% of gene" -- `-s`: Per the `bedtools intersect` online documentation, "The `-s` option enforces that overlaps be on the same strand" -- AG's notes - + "486" - + "70% different from any known transcript" - * `#QUESTION` What is this percentage? How did AG calculate it? - -*`#YAAD` This is how we made `mRNA_overlap_completely.gtf`* -```bash -bedtools intersect -F 1 -s -wa -a downloadable_collapsed.gtf -b mRNAonly.gtf \ - > mRNA_overlap_completely.gtf -``` - - -### *"How many transcripts are partial genes?"* -Related note from AG: "short" -```bash -bedtools intersect -F .2 -s -wa -a downloadable_collapsed.gtf -b mRNAonly.gtf \ - > mRNA_overlap_20.gtf -``` -- `-F .2`: To be reported, "A" features must overlap "B" features by a minimum of 20% (`-F Minimum overlap required as a fraction of B`) -- `-s`: ...and the overlaps must be on the same strand -- `-wa`: ...and for any overlaps between "A" and "B", write out the whole feature assigned to `-a` (`downloadable_collapsed.gtf`) - + i.e., not just the portion that overlaps - -Note from AG -```bash -# Then subtract all extended transcripts - if this works it should be small -#+ amount -``` - -```bash -bedtools intersect -v -s -a mRNA_overlap_20.gtf -b mRNA_overlap_1.gtf \ - > mRNA_frag1.gtf -``` -- `#QUESTIONS` Where did `mRNA_overlap_1.gtf` come from? - + Is it the same as `mRNA_overlap_completely.gtf`? - * I would assume so, or it seems so, since we're trying to isolate all extended transcripts - * i.e., those that extend beyond transcripts entirely overlapping established annotated mRNA transcripts -- Notes from AG - + "This also pulls transcripts which are extended but with weird start site - not total overlap with gene" - + "~50 or fewer fragment genes" - - -### *"How many transcripts are completely intergenic?"* -Related note from AG: "no mRNA overlap" -```bash -bedtools intersect -v -wa -a downloadable_collapsed.gtf -b mRNAonly.gtf \ - > totally_intergenic_2.gtf - -gffcompare -C -o intergenic totally_intergenic_2.gtf -``` -- `-v Only report those entries in A that have _no overlaps_ with B.` - + `Similar to "grep -v" (an homage).` -- `-wa`: For any found features in "A", report the whole of them - + I think this may not be needed since `-v` ensures that there will be no overlap at all; it selects for the entirety of an "A" feature by its nature -- Note from AG - + "1275" - - -### *"Make a gtf to determine if extension is 3’ or 5’"* -```bash -bedtools slop -i mRNAonly.gtf -g saccer3.genome -l 100 -r 0 -s \ - > 100_3_mRNA.gtf - -bedtools slop -i mRNAonly.gtf -g saccer3.genome -l 200 -r 0 -s \ - > 200_3_mRNA.gtf - -bedtools slop -i mRNAonly.gtf -g saccer3.genome -l 0 -r 100 -s \ - > 100_5_mRNA.gtf - -bedtools slop -i mRNAonly.gtf -g saccer3.genome -l 0 -r 200 -s \ - > 200_5_mRNA.gtf -``` -- `-i`: `-i ` -- `-g`: `-g ` -- `-l`: `-l The number of base pairs to subtract from the start coordinate.` - + `(Integer) or (Float, e.g. 0.1) if used with -pct.` -- `-r`: `-r The number of base pairs to add to the end coordinate.` - + `(Integer) or (Float, e.g. 0.1) if used with -pct.` -- `-s`: `-s Define -l and -r based on strand.` - + `E.g., if used, -l 500 for a negative-stranded feature, it will add 500 bp downstream. Default = false.` - -```bash -gffcompare -C -o extended_total_number mRNA_overlap_completely.gtf -``` -- 714 extended transcripts or 10% of genes - -```bash -bedtools intersect -F 1 -s -wa -a mRNA_overlap_completely.gtf -b 100_3_mRNA.gtf \ - > 3_extended_100_annos.gtf - -gffcompare -C -o 3_extended_100_annos 3_extended_100_annos.gtf -``` -- 489 of 789 - -```bash -bedtools intersect -F 1 -s -wa -a mRNA_overlap_completely.gtf -b 200_3_mRNA.gtf \ - > 3_extended_200_annos.gtf - -gffcompare -C -o 3_extended_200_annos 3_extended_200_annos.gtf -``` -- 489 of 714 - -```bash -bedtools intersect -F 1 -s -wa -a mRNA_overlap_completely.gtf -b 100_5_mRNA.gtf \ - > 5_extended_100_annos.gtf -bedtools intersect -F 1 -s -wa -a mRNA_overlap_completely.gtf -b 200_5_mRNA.gtf \ - > 5_extended_200_annos.gtf -gffcompare -C -o 5_extended_200_annos 5_extended_200_annos.gtf -``` -- 490 of 714 - + `#QUESTION` Is this for `5_extended_200_annos`? - + `#QUESTION` What about for `5_extended_100_annos`? - -```bash -bedtools intersect -F 1 -s -wa -a 5_extended_200_annos.combined.gtf -b 3_extended_200_annos.combined.gtf \ - > extended_in_both_directions.gtf -gffcompare -C -o 5_3_extended_200_annos extended_in_both_directions.gtf -``` -- 276 - -```bash -bedtools intersect -F 1 -s -v -wa -a downloadable_collapsed.gtf -b 3_extended_200_annos.combined.gtf \ - > unclassed.gtf -``` - - -### *"Bedtools subtract"* -```bash -bedtools subtract -r -f 1 -s -a downloadable_collapsed.gtf -b Antisense_tomRNA_overlap_20p.gtf \ - > no_antisense.gtf - -bedtools subtract -r -f 1 -s -a no_antisense.gtf -b totally_intergenic_2.gtf \ - > no_antisense_no_intergenic.gtf - -bedtools subtract -r -f 1 -s -a no_antisense_no_intergenic.gtf -b mRNA_overlap_1.gtf \ - > no_antisense_no_intergenic_no_extended.gtf -``` -- `-r`: `-r Require that the fraction overlap be reciprocal for A AND B.` - + `In other words, if -f is 0.90 and -r is used, this requires that B overlap 90% of A and A _also_ overlaps 90% of B.` -- `-f`: `-f Minimum overlap required as a fraction of A.` - + `Default is 1E-9 (i.e., 1bp).` - + `FLOAT (e.g. 0.50)` -- `-s`: `-s Require same strandedness. That is, only report hits in B that overlap A on the _same_ strand.` - + `By default, overlaps are reported without respect to strand.` -- `-a`: `-a ` -- `-b`: `-b ` -- `#QUESTIONS` Where did `mRNA_overlap_1.gtf` come from? (*This is a repeat of what I wrote above.*) - + Is it the same as `mRNA_overlap_completely.gtf`? - * I would assume so, or it seems so, since we're trying to isolate all extended transcripts - * i.e., those that extend beyond transcripts entirely overlapping established annotated mRNA transcripts - - -#### Sussing things out from the online documentation for `bedtools subtract` - -##### -f Requiring a minimal overlap fraction before subtracting -This option behaves the same as the -f option for bedtools intersect. In this case, subtract will only subtract an overlap with B if it covers at least the fraction of A defined by -f. If an overlap is found, but it does not meet the overlap fraction, the original A feature is reported without subtraction. - -```bash -$ cat A.bed -chr1 100 200 - -$ cat B.bed -chr1 180 300 - -$ bedtools subtract -a A.bed -b B.bed -f 0.10 -chr1 100 180 - -$ bedtools subtract -a A.bed -b B.bed -f 0.80 -chr1 100 200 -``` - - -##### -s Enforcing same “strandedness” -This option behaves the same as the -s option for bedtools intersect while scanning for features in B that should be subtracted from A. - -```bash -$ cat A.bed -chr1 100 200 a1 1 + - -$ cat B.bed -chr1 80 120 b1 1 + -chr1 180 300 b2 1 - - -$ bedtools subtract -a A.bed -b B.bed -s -chr1 120 200 a1 1 + -``` - - -##### -S Enforcing opposite “strandedness” -This option behaves the same as the -s option for bedtools intersect while scanning for features in B that should be subtracted from A. - -```bash -$ cat A.bed -chr1 100 200 a1 1 + - -$ cat B.bed -chr1 80 120 b1 1 + -chr1 180 300 b2 1 - - -$ bedtools subtract -a A.bed -b B.bed -S -chr1 100 180 a1 1 + -``` - diff --git a/results/2022-1201/AG_emails-notes.md b/results/2022-1201/AG_emails-notes.md deleted file mode 100644 index 325e5f0..0000000 --- a/results/2022-1201/AG_emails-notes.md +++ /dev/null @@ -1,1377 +0,0 @@ - -`#AG_emails-notes.md` -
-
- -
-Table of contents - - -1. [Emails with Alison, etc.](#emails-with-alison-etc) - 1. [Email: *IGV Sharing*](#email-igv-sharing) - 1. [1: Alison → me `Wednesday, 2022-1123, 4:41 PM`](#1-alison-%E2%86%92-me-wednesday-2022-1123-441-pm) - 1. [Email: *Questions, etc. for transcriptome assembly*](#email-questions-etc-for-transcriptome-assembly) - 1. [1: Me → Alison `Friday, 2022-1202, 12:53`](#1-me-%E2%86%92-alison-friday-2022-1202-1253) - 1. [Files](#files) - 1. [2: Alison → Me `Thursday, 2022-1202, 13:32`](#2-alison-%E2%86%92-me-thursday-2022-1202-1332) - 1. [Email: *Notes on Trinity*](#email-notes-on-trinity) - 1. [1: Alison → Me `Friday, 2022-1202, 16:58`](#1-alison-%E2%86%92-me-friday-2022-1202-1658) - 1. [Files](#files-1) - 1. [2: Me → Alison `Friday, 2022-1202, 17:26`](#2-me-%E2%86%92-alison-friday-2022-1202-1726) - 1. [3: Alison → Me `Friday, 2022-1202, 17:49`](#3-alison-%E2%86%92-me-friday-2022-1202-1749) - 1. [Files](#files-2) - 1. [4: Me → Alison `Saturday, 2022-1203, 9:10`](#4-me-%E2%86%92-alison-saturday-2022-1203-910) - 1. [5: Me → Alison `Friday, 2022-1228, 10:12`](#5-me-%E2%86%92-alison-friday-2022-1228-1012) - 1. [6: Me → Alison `Friday, 2022-1228, 12:27`](#6-me-%E2%86%92-alison-friday-2022-1228-1227) - 1. [7: Alison → me `Monday, 2022-1228, 13:44`](#7-alison-%E2%86%92-me-monday-2022-1228-1344) - 1. [8: Alison → me `Monday, 2023-0103, 12:22`](#8-alison-%E2%86%92-me-monday-2023-0103-1222) - 1. [File](#file) - 1. [9: Me → Alison `Friday, 2023-0103, 13:18`](#9-me-%E2%86%92-alison-friday-2023-0103-1318) - 1. [10: Alison → me `Monday, 2023-0103, 13:22`](#10-alison-%E2%86%92-me-monday-2023-0103-1322) - 1. [Files](#files-3) - 1. [11: Me → Alison `Friday, 2023-0103, 13:29`](#11-me-%E2%86%92-alison-friday-2023-0103-1329) - 1. [12: Me → Alison `Friday, 2023-0103, 17:56`](#12-me-%E2%86%92-alison-friday-2023-0103-1756) - 1. [13: Alison → me `Monday, 2023-0103, 18:02`](#13-alison-%E2%86%92-me-monday-2023-0103-1802) - 1. [Email: *Blacklist file*](#email-blacklist-file) - 1. [1: Alison → me `Monday, 2022-1205, 3:45 PM`](#1-alison-%E2%86%92-me-monday-2022-1205-345-pm) - 1. [2: Me → Alison `Monday, 2022-1205, 4:05 PM`](#2-me-%E2%86%92-alison-monday-2022-1205-405-pm) - 1. [3: Me → Alison `Tuesday, 2022-1206, 11:10 AM`](#3-me-%E2%86%92-alison-tuesday-2022-1206-1110-am) - 1. [4: Me → Alison `Tuesday, 2022-1206, 11:16 AM`](#4-me-%E2%86%92-alison-tuesday-2022-1206-1116-am) - 1. [5: Alison → me `Tuesday, 2022-1206, 11:44 AM`](#5-alison-%E2%86%92-me-tuesday-2022-1206-1144-am) - 1. [*Note fr/Alison on what to blacklist and what to not*](#note-fralison-on-what-to-blacklist-and-what-to-not) - 1. [6: Me → Alison `Tuesday, 2022-1206, 11:47 AM`](#6-me-%E2%86%92-alison-tuesday-2022-1206-1147-am) - 1. [7: Me → Alison `Tuesday, 2022-1206, 3:34 PM`](#7-me-%E2%86%92-alison-tuesday-2022-1206-334-pm) - 1. [8: Alison → me `Wednesday, 2022-1207, 12:20 PM`](#8-alison-%E2%86%92-me-wednesday-2022-1207-1220-pm) - 1. [9: Me → Alison `Wednesday, 2022-1207, 12:31 PM`](#9-me-%E2%86%92-alison-wednesday-2022-1207-1231-pm) - 1. [10: Me → Alison `Wednesday, 2022-1207, 12:39 PM`](#10-me-%E2%86%92-alison-wednesday-2022-1207-1239-pm) - 1. [Email: *Bam files in directory `~/tsukiyamalab/alisong/Kris_bams/`*](#email-bam-files-in-directory-~tsukiyamalabalisongkris_bams) - 1. [1: Me → Alison `Monday, 2022-1212, 3:27 PM`](#1-me-%E2%86%92-alison-monday-2022-1212-327-pm) - 1. [2: Alison → Me `Monday, 2022-1212, 3:42 PM`](#2-alison-%E2%86%92-me-monday-2022-1212-342-pm) - 1. [Email: *Gff3 files in `~/tsukiyamalab/alisong/Kris/gtfs_2022-1214/param_gene-overlap_{FALSE,TRUE}`*](#email-gff3-files-in-~tsukiyamalabalisongkrisgtfs_2022-1214param_gene-overlap_falsetrue) - 1. [1: Me → Alison `Wednesday, 2022-1213, 3:17 PM`](#1-me-%E2%86%92-alison-wednesday-2022-1213-317-pm) - 1. [Email: *Preprocessing Thoughts*](#email-preprocessing-thoughts) - 1. [1: Alison → Me `Thursday, 2022-1215, 19:07`](#1-alison-%E2%86%92-me-thursday-2022-1215-1907) - 1. [Files](#files-4) - 1. [2: Me → Alison `Friday, 2022-1216, 12:07`](#2-me-%E2%86%92-alison-friday-2022-1216-1207) - 1. [Email: *split script*](#email-split-script) - 1. [1: Alison → Me `Friday, 2022-1216, 14:50`](#1-alison-%E2%86%92-me-friday-2022-1216-1450) - 1. [Files](#files-5) - 1. [Email: *More trinity thoughts*](#email-more-trinity-thoughts) - 1. [1: Alison → Me `Friday, 2022-1216, 18:13`](#1-alison-%E2%86%92-me-friday-2022-1216-1813) - 1. [File](#file-1) - 1. [2: Me → Alison `Monday, 2022-1219, 11:49`](#2-me-%E2%86%92-alison-monday-2022-1219-1149) - 1. [Email: *Update*](#email-update) - 1. [1: Me → Alison `Monday, 2022-1221, 12:02`](#1-me-%E2%86%92-alison-monday-2022-1221-1202) - 1. [2: Alison → Me `Monday, 2022-1221, 12:07`](#2-alison-%E2%86%92-me-monday-2022-1221-1207) - 1. [3: Me → Alison `Monday, 2022-1221, 17:50`](#3-me-%E2%86%92-alison-monday-2022-1221-1750) - 1. [4: Me → Alison `Tuesday, 2022-1222, 11:57`](#4-me-%E2%86%92-alison-tuesday-2022-1222-1157) - 1. [5: Me → Alison `Tuesday, 2022-1222, 12:00`](#5-me-%E2%86%92-alison-tuesday-2022-1222-1200) - 1. [6: Alison → Me `Tuesday, 2022-1222, 12:44`](#6-alison-%E2%86%92-me-tuesday-2022-1222-1244) - 1. [7: Alison → Me `Tuesday, 2022-1222, 14:12`](#7-alison-%E2%86%92-me-tuesday-2022-1222-1412) - 1. [Email: *Preprocessing - more thoughts!*](#email-preprocessing---more-thoughts) - 1. [1: Alison → Me `Tuesday, 2022-1222, 16:55`](#1-alison-%E2%86%92-me-tuesday-2022-1222-1655) - 1. [Files](#files-6) - 1. [Email: *Path to my genome directories and files*](#email-path-to-my-genome-directories-and-files) - 1. [1: Me to Alison `2023-0105, 13:30`](#1-me-to-alison-2023-0105-1330) - 1. [2: Alison to Me, `2023-0105, 15:00`](#2-alison-to-me-2023-0105-1500) - 1. [3: Me to Alison, `2023-0105, 16:57`](#3-me-to-alison-2023-0105-1657) - 1. [Email: *`.bam`s and `.bw`s galore available in...*](#email-bams-and-bws-galore-available-in) - 1. [1: Me to Alison, `2023-0105, 14:59`](#1-me-to-alison-2023-0105-1459) - 1. [2: Alison to me, `2022-0105, 15:00`](#2-alison-to-me-2022-0105-1500) - 1. [Email: *Update*](#email-update-1) - 1. [1: Alison to me, `2023-0105, 16:25`](#1-alison-to-me-2023-0105-1625) - 1. [2: Me to Alison, `2023-0105, 16:58`](#2-me-to-alison-2023-0105-1658) - 1. [Notes from related discussion with AG](#notes-from-related-discussion-with-ag) - 1. [Snippets](#snippets) - 1. [Posting to the PASA forum: *Questions: Running Launch_PASA_pipeline.pl in "gene_overlap mode" with a gff3 that contains whole-chromosome annotations: Effect on how --gene_overlap operates?*](#posting-to-the-pasa-forum-questions-running-launch_pasa_pipelinepl-in-gene_overlap-mode-with-a-gff3-that-contains-whole-chromosome-annotations-effect-on-how---gene_overlap-operates) - 1. [Me to Brian, `2023-0105, 17:48`](#me-to-brian-2023-0105-1748) - 1. [Brian to me, `2023-0106, 06:42`](#brian-to-me-2023-0106-0642) - 1. [Email: *ncRNA annotations*](#email-ncrna-annotations) - 1. [Alison to me, `2023-0105, 17:06`](#alison-to-me-2023-0105-1706) - 1. [Steve Hahn to Toshi Tsukiyama, `2022-0707, 12:24`](#steve-hahn-to-toshi-tsukiyama-2022-0707-1224) - 1. [*"followup from question at meeting"*, Sebastian Marquardt to Steve Hahn, `2022-0628, 9:52`](#followup-from-question-at-meeting-sebastian-marquardt-to-steve-hahn-2022-0628-952) - 1. [Downloading and link to the files, and notes, etc.](#downloading-and-link-to-the-files-and-notes-etc) - 1. [Files](#files-7) - 1. [Notes](#notes) - 1. [Email: *One more gtf*](#email-one-more-gtf) - 1. [Alison to me, `2023-0106, 17:40`](#alison-to-me-2023-0106-1740) - 1. [Set up an appropriate file location for the file](#set-up-an-appropriate-file-location-for-the-file) - 1. [File](#file-2) - 1. [Email: *Following up on PASA "gene_overlap mode"*](#email-following-up-on-pasa-gene_overlap-mode) - 1. [Me to Alison, `2023-0106, 12:13`](#me-to-alison-2023-0106-1213) - 1. [Email: *Example of the metrics offered by PasaWeb*](#email-example-of-the-metrics-offered-by-pasaweb) - 1. [Me to Alison, `2023-0106, 16:47`](#me-to-alison-2023-0106-1647) - 1. [Alison to me, `2023-0106, 17:57`](#alison-to-me-2023-0106-1757) - 1. [Files](#files-8) - - -
-
- - -## Emails with Alison, etc. - -### Email: *IGV Sharing* -2022-1123 -
-Click to view - - -#### 1: Alison → me `Wednesday, 2022-1123, 4:41 PM` -Hi Kris - - -I have made a folder where we can easily create IGV sessions to share and compare annotation. - -It can be found at: -`~/tsukiyamalab/alisong/Kris_IGV_Sharing` - -If you go to IGV and then go file, open session, you can open the .xml file with the bigwigs and annotation files I have loaded. You could also save a new xml file with additional files, focused on a certain region or with a particular scaling. Please note all bigwigs/bams/annotation files that you want to save within a session need to be within the same folder for the .xml file to work. I made a simple one with just Q, but I imagine this folder filling up with stuff as we continue to work. Feel free to copy stuff into that folder for ease. I assume none of these files will be particularly large so duplicates should have a negligible effect on storage costs. - -Enjoy your Thanksgiving! - -Alison -
-
- - -### Email: *Questions, etc. for transcriptome assembly* -2022-1202 -
-Click to view - - -#### 1: Me → Alison `Friday, 2022-1202, 12:53` -Hi Alison, - -To expedite things for transcriptome assembly, I put together some questions, comments, and notes. I’ve copied them over from my lab notebook into a .txt file. I also included screen grabs that might be easier to read. - -The most important thing, I think, is for me to get some kind of an itemized/categorized list of problems with the previous assembly (or assemblies) together with descriptions of the problem (i.e., what we observe), what we “want”/would expect in ideal situations, and—for each itemized/categorized problem—a visual example or two with genomic coordinates that I could reference in IGV. It’s a big ask, I know, but I think it would be immensely helpful—for my own education, for me to get on the same wavelength as you, and for my upcoming email to Brian Haas, the author/maintainer of Trinity. (Also, I checked with Toshi, and he is OK with discussing relevant aspects of the project with Brian.) - -Please take your time with this—maybe you can work on it when you have non-benchwork-or-other-responsibility time. - -If you don’t know the answer to any of these questions, or if the answers are simply ‘no,’ then no worries at all. - -And then, of course, apologies for any spelling or grammatical errors in this stuff. - -Thanks! -Kris - - -##### Files -[File: `KA.2022-1202.questions-comments-notes.1.png`](./notebook/KA.2022-1202.questions-comments-notes.1.png) -[File: `KA.2022-1202.questions-comments-notes.2.png`](./notebook/KA.2022-1202.questions-comments-notes.2.png) -[File: `KA.2022-1202.questions-comments-notes.txt`](./notebook/KA.2022-1202.questions-comments-notes.txt) - - -#### 2: Alison → Me `Thursday, 2022-1202, 13:32` -Hi Kris - - -I am going to focus on the "#IMPORTANT" section with the hope of getting you a decent write up by end of day. If I have time, I will also begin to address the other questions. - -That said - here are some questions I can answer very quickly. - -> Is there a reason Alison aligned her data with Bowtie 2, a non-splice-aware aligner, versus something like HISAT2 or STAR, both splice-aware aligners? -- We had the pipeline working already is the answer. Also our yeast only contain a few hundred introns (283 out of 6600 genes). Here is the database I use with specific intron information: http://intron.ucsc.edu/yeast4.1/ -- If you think changing alignment will meaningfully improve data quality, then I am open to the suggestion. It may be something reviewers insist on. I can see introns in IGV at annotated sites - but I guess it's possible we have been missing novel Q introns. - ->When evaluating nascent RNA expression, do we need to consider introns, splicing, etc. at all? Like, would we expect nascent or stready-state 4tU-seq signal to run into introns or skip them? -- The Nascent 4tU contains more pre-mRNA (not yet spliced) than the steady state. By eye, splicing is much slower in Q cells than in G1 cells, as pre-mRNA makes up a larger fraction of the transcript. This is visually apparent without a splice aware aligner but might be even more dramatic with STAR or HISAT2. Annotation should not focus on splice sites. - -Alison -
-
- - -### Email: *Notes on Trinity* -2022-1202-1203 -
-Click to view - - -#### 1: Alison → Me `Friday, 2022-1202, 16:58` -Hi Kris - - -Please let me know if you need more information or clarification. Hopefully I have addressed a lot of your questions and concerns with these two documents. FYI the word document needs to be in "web layout" under the view tab to look correct. - -Have a great weekend! - -Alison -
-
- - -##### Files -[File: `AG.2022-1202.notes_on_trinity.1.docx`](./notebook/AG.2022-1202.notes_on_trinity.1.docx) -[File: `AG.2022-1202.notes_on_trinity.2.bedtools_comparison.pdf`](./notebook/AG.2022-1202.notes_on_trinity.2.bedtools_comparison.pdf) - -
-Click to view - - -#### 2: Me → Alison `Friday, 2022-1202, 17:26` -Thank you, Alison! I will check it soon. Have a great weekend! - --Kris - - -#### 3: Alison → Me `Friday, 2022-1202, 17:49` -Awesome! I also went ahead and tried the right vs wrong analysis of the original annotation. Those notes are attached to this email. I saved the IGV regions for this in the shared folder within my Tsukiyama lab folder, so you can open these up for yourself if you want. All counting was rough and quick so numerical values might be inexact. - -Alison -
-
- - -##### Files -[File: `AG.2022-1202.notes_on_trinity.3.right_vs_wrong_analysis.docx`](./notebook/AG.2022-1202.notes_on_trinity.3.right_vs_wrong_analysis.docx) - -
-Click to view - - -#### 4: Me → Alison `Saturday, 2022-1203, 9:10` -This is great, thank you! Sometime next week, let's get you set up with a GitHub account so that you can get quick access to my work and notes for the project. No rush on this though; just sent you the GitHub invite because it had been on my mind. - --Kris - - -#### 5: Me → Alison `Friday, 2022-1228, 10:12` -Happy holidays! Do you have screenshots I can look at for the regions in this file (right vs wrong analysis.docx)? - -Not really finding them in /home/kalavatt/tsukiyamalab/alisong - -No rush on this; just trying to learn things. - -Thanks, -Kris - -```txt -❯ ls -lhaFGf -total 502M --rw-rw---- 1 agreenla 190M Feb 9 2013 83Q_Jan_Norm.sgr --rw-rw---- 1 agreenla 285M Feb 9 2013 81log_Jan_Norm.sgr --rw-rw-r-- 1 sswygert 3.2M Aug 22 2018 PolII_Q_rrp6_RPKM.bw --rw-rw-r-- 1 sswygert 3.1M Jun 7 2019 PolII_Q_RPKM.bw -drwxrws--- 3 agreenla 88 Oct 7 2019 ChIP/ -drwxrws--- 2 ccucinot 379 Oct 11 2019 scripts_from_christine/ --rw-rw---- 1 agreenla 714K Dec 10 2019 191209_trf4depletion.zip -drwxrws--- 3 agreenla 85 Jan 3 2020 'strain pics'/ -drwxrws--- 6 agreenla 474 Jan 3 2020 westerns/ --rw-rw---- 1 agreenla 11M Jan 8 2020 'lady is a tramp.pptx' --rw-rw---- 1 agreenla 12K Mar 4 2020 '4tU barcodes and concentration info.xlsx' -drwxrws--- 4 ccucinot 202 Apr 1 2020 genomes_from_christine/ --rw-rw---- 1 agreenla 2.9K Apr 1 2020 'Rna_scripts!.zip' -drwxrws--- 2 agreenla 185 Apr 5 2020 Rna_scripts/ -drwxrws--- 2 agreenla 694 Jun 23 2020 'western quant'/ -drwxrws--- 3 agreenla 92 Jul 13 2020 'RNA sequencing'/ -drwxrws--- 2 agreenla 41 Aug 4 2020 scripts/ -drwxrws--- 7 agreenla 220 Oct 23 2020 jordancopy/ -drwxrws--- 2 agreenla 199 Dec 21 2020 RSEM_reference/ --rw-rw---- 1 agreenla 7.2K Dec 22 2020 percent_noncoding.pzfx -drwxrws--- 2 agreenla 478 Feb 17 2021 computational_notes/ --rw-rw---- 1 agreenla 17K Feb 17 2021 ChIP-seq_Data-Processing_KCAB_AGedit.docx -drwxrws--- 6 agreenla 1.2K Mar 8 2021 gmap_genome/ -drwxrws--- 2 agreenla 0 Apr 14 2021 combine_Q_bams_Alison_Jordan/ -drwxrws--- 2 agreenla 696 Apr 26 2021 scripts_to_send_matt/ --rw-rw---- 1 agreenla 14K May 17 2021 Research_Summary_2021.docx -drwxrws--- 2 agreenla 369 May 17 2021 'scripts I stole from christine'/ -drwxrws--- 2 agreenla 294 Jul 1 2021 0001144_01/ -drwxrws--- 2 dhunt 559 Jul 15 2021 'Alison Microscope 07142021'/ -drwxrws--- 3 agreenla 992 Jul 23 2021 Kit_comparison/ -drwxrws--- 2 agreenla 110 Jul 29 2021 23S/ -drwxrws--- 3 agreenla 190 Jul 29 2021 20S/ -drwxrws--- 42 agreenla 2.0K Jul 29 2021 narnavirus/ -drwxrws--- 2 agreenla 1.7K Jul 30 2021 dead_or_alive/ -drwxrws--- 19 agreenla 1.9K Aug 3 2021 20210217_RNAseq/ -drwxrws--- 3 agreenla 120 Aug 31 2021 tRAX/ -drwxrws--- 3 agreenla 40 Sep 1 2021 Nanodrop/ --rw-rw---- 1 agreenla 48K Dec 1 2021 comittee_summary_fall2021_Greenlaw.docx --rw-rw---- 1 agreenla 162 Dec 1 2021 '~$Classes To-Do List.docx' --rw-rw---- 1 agreenla 16K Dec 1 2021 '3 Classes To-Do List.docx' -drwxrws--- 2 agreenla 0 Dec 14 2021 fastq_dump/ --rw-rw---- 1 ccucinot 23K Dec 29 2021 ExampleTimeCourseStrategy.docx --rw-rw---- 1 agreenla 13K Feb 10 2022 epic_biosketch.docx --rw-rw---- 1 agreenla 162 Feb 11 2022 '~$ic_biosketch.docx' -drwxrws--- 4 agreenla 653 Mar 10 2022 Jeffdata/ --rw-rw---- 1 agreenla 162 Mar 29 2022 '~$ampleTimeCourseStrategy.docx' --rw-rw---- 1 agreenla 162 May 16 2022 '~$mittee_summary_fall2021_Greenlaw.docx' -drwxrws--- 4 agreenla 172 Jun 15 2022 western_analysis/ --rw-rw---- 1 agreenla 2.3M Sep 15 19:56 ResearchStatement_CC5_AGedits.docx -drwxrws--- 7 agreenla 703 Sep 29 18:44 TRF4_SSRNA_April2022/ -drwxrws--- 2 agreenla 2.5K Oct 3 17:15 excel/ -drwxrws--- 5 agreenla 224 Oct 20 18:50 rotation/ -drwxrws--- 11 agreenla 413 Nov 1 10:50 WTQvsG1/ -drwxrws--- 3 agreenla 3.2K Dec 8 16:01 protocols/ -drwxrws--- 2 agreenla 2.1K Dec 12 14:47 'APE files + primers'/ -drwxrws--- 4 agreenla 56 Dec 12 14:47 20210625_RNAseq/ -drwxrws--- 2 agreenla 3.2K Dec 12 14:47 gel_doc_backup/ -drwxrws--- 3 agreenla 1.8K Dec 12 14:47 'Q entry yeild'/ -drwxrws--- 2 agreenla 142 Dec 12 14:47 'Rna_scripts!'/ -drwxrws--- 6 ccucinot 96 Dec 12 14:47 FACS/ -drwxrws--- 7 agreenla 154 Dec 12 14:47 old_analysis/ -drwxrws--- 3 agreenla 491 Dec 12 14:47 tRNA-read-mapping-master/ -drwxrws--- 4 agreenla 4.0K Dec 19 17:11 powerpoints/ -drwxrws--- 5 agreenla 811 Dec 21 12:31 Nab3_Nrd1_Depletion/ -drwxrws--- 4 agreenla 905 Dec 21 12:46 rtr1_rrp6_wt/ -drwxrws--- 9 kalavatt 320 Dec 22 12:14 assess_transcriptome_assemblies/ -drwxrwsr-x 48 arepetto 1.7K Dec 28 10:03 ../ -drwxrws--- 49 agreenla 2.4K Dec 28 10:03 ./ -drwxrws--- 4 ccucinot 1.2K Dec 28 10:04 annotation_files/ -``` - - -#### 6: Me → Alison `Friday, 2022-1228, 12:27` -I'm working through `BEDTOOLS COMPARISON.pdf`; can you help me understand a few things? - -What is "`Combined.gtf`" and "`Merge_downloaded_gtf`"? How were they obtained? - -What does this mean: "Flattened contained isoforms..." (sixth line of the first page)? - -What is "`downloadable_collapsed.gtf`"? - -Where or how did you get "`mRNAonly.gtf`"? - -Thanks; and no rush at all, -Kris - - -#### 7: Alison → me `Monday, 2022-1228, 13:44` -Hi Kris - -I am away from my computer today but I can hopefully send some more clarification tomorrow. - -In the meantime - combined.gtf is a bunch of yeast annotations from different sources. Christine gave it to me and she got it from someone is her grad school lab. mRNAonly.gtf was made by using awk to filter only the mRNA from combined.gtf. - -I don't know the exact documents you are referring to without being able to go back and look, but anything with the word downloaded was downloaded from google docs which is where I did all the hand curations on trinity. - -Alison - - -#### 8: Alison → me `Monday, 2023-0103, 12:22` -Hi Kris - - -Sorry for the late response. - -Flatten contained isoforms is a function of gff compare. If you give the utility only one gff, with the -C option, all fully contained transcripts will collapse. I have attached diagram. -https://ccb.jhu.edu/software/stringtie/gffcompare.shtml - - -I don't have screen shots but IGV sessions for right vs wrong can be found at: -`~/tsukiyamalab/alisong/assess_transcriptome_assemblies/IGV/2022-1123-1202` - -Let me know if you have any other questions or if I missed things. The rtr1 experiment seems to have failed, so I have a bunch of time to stare at different trinity pre-processing settings. - -Alison -
-
- - -##### File -[File: `AG.2023-0103.notes_on_trinity.gffcompare.png`](./notebook/AG.2023-0103.notes_on_trinity.gffcompare.png) - -
-Click to view - - -#### 9: Me → Alison `Friday, 2023-0103, 13:18` -Thanks, Alison. - -If it's not too much work, could you get some rough screenshots from the IGV sessions? That'd help me out a lot, especially since I am crunched for time at the moment. - -We have a huge amount of bam and PASA gff3 data now, but it'll take a bit more time for me to document, make bigwigs, and symlink everything. Will try to complete it before I stop working tonight. I'll message you if I get it done. - -Thanks, -Kris - - -#### 10: Alison → me `Monday, 2023-0103, 13:22` -I’m currently headed to a physical therapy appointment, but can send you screenshots when I get back to lab. - -Trinity gffs are definitely the most informative to how trinity works with the data, so I would prioritize those. - -Alison -
-
- - -##### Files -*Alison got the screenshots and stored them in `~/tsukiyamalab/alisong/assess_transcriptome_assemblies/IGV/2022-1123-1202`; they are linked here too* -[File: `AG.2023-0103.notes_on_trinity.screen_shot_R1.png`](./notebook/AG.2023-0103.notes_on_trinity.screen_shot_R1.png) -[File: `AG.2023-0103.notes_on_trinity.screen_shot_R2.png`](./notebook/AG.2023-0103.notes_on_trinity.screen_shot_R2.png) -[File: `AG.2023-0103.notes_on_trinity.screen_shot_R3.png`](./notebook/AG.2023-0103.notes_on_trinity.screen_shot_R3.png) -[File: `AG.2023-0103.notes_on_trinity.screen_shot_R4.png`](./notebook/AG.2023-0103.notes_on_trinity.screen_shot_R4.png) - -
-Click to view - - -#### 11: Me → Alison `Friday, 2023-0103, 13:29` -Thanks! Will prioritize those then. - - -#### 12: Me → Alison `Friday, 2023-0103, 17:56` -Hi Alison, - -I have 399 gff3s for you in ~/tsukiyamalab/alisong/assess_transcriptome_assemblies/gff3s_2023-0103. - -The first part of filenames gives info about the processing of a given file: -- PASA_rcor-only_ -- PASA_trim-only_ -- PASA_trim-rcor_ -- PASA_unprocessed_ - -The next part of filenames gives info on the PASA parameters used and, if applicable, the minimum percent overlap needed for clustering (more info in a previous email): -- gene-overlap-?0.0_ -- minimal-overlap_ -- stringent-alignment-overlap-?0.0_ - -The next part gives info on the numbers of multimappers allowed when running Trinity GG mode: -- trinity_5781-5782_Q_IP_merged.multi-hit-mode_*_ - -The final part of the file gives info on the STAR alignment type: -- EndToEnd.compreh_init_build.gff3 -- Local.compreh_init_build.gff3 - -So far, PASA_rcor-only_* files are the only files with Trinity GG multimappers of 5, 15, and 50, and STAR Local alignment. - -PASA_trim-rcor_* also seem promising based on your previous check of .bam files—let me know how initial comparisons between PASA_rcor-only_* and PASA_trim-rcor_* go; if you think I should generate PASA_trim-rcor_* files with Trinity GG multimappers of 5, 15, and 50, and STAR Local alignment, then let me know and I will do so. - -We may want to start with analyses of gene-overlap-50.0 and stringent-alignment-overlap-30.0, and then branch out from there. - -Thanks, -Kris - - -#### 13: Alison → me `Monday, 2023-0103, 18:02` -Wow that’s so many! I will start doing small batches of comparisons, and let you know what I find out, probably sometime tomorrow. I assume it will take me most of the week to get through everything - though could be more or less depending on how many variables matter and how much. Hope your travel day is stress free! - -Alison -
-
- - -### Email: *Blacklist file* -2022-1205-1207 -
-Click to view - - -#### 1: Alison → me `Monday, 2022-1205, 3:45 PM` -Hi Kris - - -You can find the .gff file for other genomics regions in `~/tsukiyamalab/alisong/annotation_files/other_regions` I downloaded the .fasta file from sgd, and then mapped it to the reference using gmap. The gff needs to be filtered to pick out the black list regions. We don't want to blacklist origins of replication or centromeres for example. Everything is labeled pretty clearly so I would just run a few quick awk scripts to filter, but I'm sure their are other ways too. Let know if you have any questions or issues. - -Here is the source for the fasta: -[http://sgd-archive.yeastgenome.org/sequence/S288C_reference/other_features/](http://sgd-archive.yeastgenome.org/sequence/S288C_reference/other_features/) - -Alison - - -#### 2: Me → Alison `Monday, 2022-1205, 4:05 PM` -Thanks, this is great! - - -#### 3: Me → Alison `Tuesday, 2022-1206, 11:10 AM` -Hi Alison, - -It looks like there are 850 unique `Name=Something` features in the .gff file. Is there a quick way for me to know which to include in the blacklist and which to not? No rush at all. You can see the unique elements in `~/tsukiyamalab/alisong/annotation_files/other_regions/KA.other_features_genomic.sort-uniq-tally.txt`. - -Also, do you think that blacklisting the telomeric repeats in this file will be enough to prevent the weird Trinity annotations we see in telomeric regions, or should we go with a complete 10-kb blacklisting of the starts and ends of chromosomes? Or perhaps both? - -Thanks, -Kris - - -#### 4: Me → Alison `Tuesday, 2022-1206, 11:16 AM` -Ah—-I temporarily forgot about Christine’s telomere annotations. I think they’re from the UCSC table browser. If they look reasonable, perhaps we can just use those in place of blanket 10-kb blacklistings... - - -#### 5: Alison → me `Tuesday, 2022-1206, 11:44 AM` -Hi Kris - - -Here are some notes on those region names. Let me know if you have any questions. - -Alison - - -##### *Note fr/Alison on what to blacklist and what to not* -```txt -Region names. How I think we should deal with each category of region as based on how the name starts: - -ARS - Autonomously Replicating Sequence, aka origin of replication, don’t blacklist - -CEN - centromere, don’t blacklist - -HML/HMR - silent mating type cassette array, don’t blacklist - -MATALPHA - mating type locus. We use mata instead of mat@ so this can be blacklisted. Maybe ask Toshi if it is worth adjusting the reference to the correct mating type. He will probably say no. - -NTS - Non-transcribed region of the rDNA repeat, probably depleted by depletion probes but can blacklist - -ORI - mitochondrial origin of replication, don’t need to blacklist - -RE301 - recombination enhancer, don’t blacklist - -TEL - telomere, use Christine’s - -VDE - intein encoding region, don’t blacklist - -Y - every yeast chromosome named as Y (yeast) A-P (chromosome 1-16, with 1 being A, and 16 being P) and L or R (left or right of centromere). Fairly sure these are all long terminal repeats of some kind and should be blacklisted. -``` - - -#### 6: Me → Alison `Tuesday, 2022-1206, 11:47 AM` - -Very clear, thanks! - - -#### 7: Me → Alison `Tuesday, 2022-1206, 3:34 PM` - -Hi Alison, - -This is just a rough-draft thought we can talk about when you’re back in the lab: I feel a little frightened or wary to blacklist all the LTRs since they and other REs (repetitive elements) make up parts of some genes, especially lncRNA-coding ones, and some other features like TFBS. (At least, that’s the case for mammals; I’m not up on the bio of REs in yeast, so correct me if this is incorrect.) Although I don’t know, I’m thinking that it could affect the transcripts that we build at those particular genes and features with Trinity. - -Also, forgive my ignorance, but is Ty1 a specific RE or is it a class of REs containing a bunch of individually named REs? - -Thanks, -Kris - - -#### 8: Alison → me `Wednesday, 2022-1207, 12:20 PM` - -Thinking about this more, I think it's reasonable to make the least conservative blacklist, use that and then only go more aggressive if there are still issues a more extensive blacklist could fix. - -Alison - - -#### 9: Me → Alison `Wednesday, 2022-1207, 12:31 PM` - -By most conservative, do you mean all telomere regions in the file from Christine plus the stuff associated with “Y” as mentioned in the .rtf file you sent? (And possibly mat@ too?) - -```txt -Y - every yeast chromosome named as Y (yeast) A-P (chromosome 1-16, with 1 being A, and 16 being P) and L or R (left or right of centromere). Fairly sure these are all long terminal repeats of some kind and should be blacklisted. -``` - - -#### 10: Me → Alison `Wednesday, 2022-1207, 12:39 PM` - -For a least conservative version, I think we’d be good to start with just the telomere regions in Christine’s file (also, we need to confirm the source of this file and how it was generated--my initial work suggests it’s from the UCSC table browser, but I’m not yet certain about that). - -For a more conservative version, I think we’d be good to try the regions in Christine’s file, Ty1-* sequences, and telomeric-repeat sequences. - -For a very conservative version, I think we’d be good to try the above plus all other LTRs (or whatever each “Y” feature is). - -In IGV, do you see any out-of-place spikes in 4tU-seq signal that look like they could be the result of non-specific alignment? -
-
- - -### Email: *Bam files in directory `~/tsukiyamalab/alisong/Kris_bams/`* -2022-1212 -
-Click to view - - -#### 1: Me → Alison `Monday, 2022-1212, 3:27 PM` -Hi Alison, - -I created a subdirectory in your directory called 'Kris_bams/' ('~/tsukiyamalab/alisong/Kris_bams/'). Inside 'Kris_bams/', you can find symlinks to all of the relevant (and less or not relevant) bams. - -In 'Kris_bams/', the bams are subdivided into three subdirectories: -- unprocessed/ -- preprocessed/ -- preprocessed-full/ - -On "unprocessed" bams... -- reads adapter- and quality-trimmed by trim_galore: FALSE -- reads k-mer-corrected by rcorrector: FALSE -- STAR alignment type: "Local" (allows "soft clipping") - -On "preprocessed" bams... -- reads adapter- and quality-trimmed by trim_galore: TRUE -- reads k-mer-corrected by rcorrector: FALSE -- STAR alignment type: "EndToEnd" (doesn't allow "soft clipping") - -On "preprocessed (full)" bams... -- reads adapter- and quality-trimmed by trim_galore: TRUE -- reads k-mer-corrected by rcorrector: TRUE -- STAR alignment type: "EndToEnd" (doesn't allow "soft clipping") - -Within each of these subdirectories, you'll find bams for... -- 5781_G1_IN -- 5781_G1_IP -- 5781_Q_IN -- 5781_Q_IP -- 5782_G1_IN -- 5782_G1_IP -- 5782_Q_IN -- 5782_Q_IP - -There are four of each kind -- multi-hit-mode_1000: Up to 1000 alignments are allowed/retained for a given read -- multi-hit-mode_100: Up to 100 alignments are allowed/retained for a given read -- multi-hit-mode_10: Up to 10 alignments are allowed/retained for a given read -- multi-hit-mode_1: Only 1 alignment are allowed/retained for a given read (standard; basically, "multi-hit mode" was off) - -I'd start with making bigwig, etc. files for "unprocessed", "preprocessed", and "preprocessed (full)" 5781_Q_IP multi-hit-mode_1 bams (three samples). From there, you could branch out to 5782_Q_IP multi-hit-mode_1 bams (another three samples). Then maybe the same for Q_IN (another six samples)? - -From there, maybe try 5781_Q_{IP,IN} multi-hit-mode_1000 and 5782_Q_{IP,IN} multi-hit-mode_1000 bams (twelve samples) to see where all the multimappers go (e.g., are they going to Ty elements?) - -Thanks, -Kris - -P.S. Symbolic links stuff: - -General pattern: `ln -s source_file target_file` - -For example, here’s how I quickly symlinked the files to, e.g., 'Kris_bams/preprocessed-full/' -```bash -#!/bin/bash -#DONTRUN - -pwd -# /home/kalavatt/tsukiyamalab/alisong/Kris_bams/preprocessed-full - -p_pf="/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd" -for i in "${p_pf}/"*".sc_all.bam"; do - echo "Working with ${i}" - # echo "${i}" "$(basename "${i}")" # Test things before actually running the command - ln -s "${i}" "$(basename "${i}")" # Run the command when things look reasonable - echo "" -done -``` - - -#### 2: Alison → Me `Monday, 2022-1212, 3:42 PM` -Awesome! Thank you so much! - -Alison -
-
- - -### Email: *Gff3 files in `~/tsukiyamalab/alisong/Kris/gtfs_2022-1214/param_gene-overlap_{FALSE,TRUE}`* -2022-1213 -
-Click to view - - -#### 1: Me → Alison `Wednesday, 2022-1213, 3:17 PM` -Hi Alison, - -I created symlinks to all of the relevant (and less or not relevant) gff3s in ~/tsukiyamalab/alisong/Kris/gtfs_2022-1214/. - -Within this directory, there are two subdirectories: -param_gene-overlap_FALSE/ -param_gene-overlap_TRUE/ - -Documentation is forthcoming (for the time being, we can start with files in param_gene-overlap_FALSE/, although comparing to files in *_TRUE/ will be important). - -There are nine kinds of files inside each subdirectory. Here’s the breakdown (GF = genome-free mode, GG = genome-guided mode): -__"unprocessed"__ -+ PASA from Trinity GF + Trinity GG multi-hit-mode 1 -+ PASA from Trinity GF + Trinity GG multi-hit-mode 10 -+ PASA from Trinity GF + Trinity GG multi-hit-mode 100 -__"processed"__ -+ PASA from Trinity GF + Trinity GG multi-hit-mode 1 -+ PASA from Trinity GF + Trinity GG multi-hit-mode 10 -+ PASA from Trinity GF + Trinity GG multi-hit-mode 100 -__"processed (full)"__ -+ PASA from Trinity GF + Trinity GG multi-hit-mode 1 -+ PASA from Trinity GF + Trinity GG multi-hit-mode 10 -+ PASA from Trinity GF + Trinity GG multi-hit-mode 100 - -Trinity GF is always done with multi-hit-mode 1 (because GF doesn’t know how to handle multi-mappers, although Trinity GG does). I’ll be sure to send you rationale, experiment details, etc. before you come into the office tomorrow. - -Thanks, -Kris -
-
- - -### Email: *Preprocessing Thoughts* -2022-1215-1216 -
-Click to view - - -#### 1: Alison → Me `Thursday, 2022-1215, 19:07` -I pulled up and looked at some of the bigwigs you made and I have pretty strong opinions almost immediately on what preprocessing is going to benefit Trinity. I made a powerpoint about it for clarity sake. - -Far and away the most important variable seems to be how many hits are allowed. I only visually compared 1 and 10, but I will plan to look at 100 and 1000 tomorrow. That said, I think we want to retain multiple hits, do no MapQ filtering, and then implement our blacklist for regions of concern between alignment and Trinity. Hopefully the attached presentation can illustrate why I have come to that initial conclusion. - -I submitted my library tonight so I am now full time computational for the next few weeks minimum. I am planning to check out the gffs tomorrow to see if trinity is affected in a straightforward way by the various modes of preprocessing. - -Let me know if you have any questions/issues or else if you have a different idea about what will work best. - -Alison -
-
- - -##### Files -[File: `AG.2022-1215.preprocessing-thoughts.pptx`](./notebook/AG.2022-1215.preprocessing_thoughts.pptx) - -
-Click to view - - -#### 2: Me → Alison `Friday, 2022-1216, 12:07` -Wow, I’m happy to see that the retention of multi-mappers seems to better represent signal at paralogs and other features, and I agree with all your comments. I like your thinking re: keeping as many multi-mappers as is reasonable and addressing false signal at repetitive regions through blacklisting rather than filtering for multi-mappers and/or MAPQ. - -I symlinked a ton of .bams and made a ton of .bws today too; now, I’m working on automating the creation of .xml files for IGV so that we don’t have to do so much drag and dropping and track set-up work. - --Kris -
-
- - -### Email: *split script* -2022-1216 -
-Click to view - - -#### 1: Alison → Me `Friday, 2022-1216, 14:50` -Hi Kris! - -This splits the strands of .gff3 files, but could easily be re-written for bed files or gtfs as well. It ran on 9 gff files in about 1 second, so I would not spend time optimizing this for speed, as it is already quite fast. - -Also it does look like I set up the bamcoverage tool from deeptools to split the stands wrong (I think you mentioned in a previous email, and I missed it). This can probably be fixed just by renaming filter strand forward to "minus", and reverse to "plus". We could also go back to the samtools way we used to do it. Not a huge issue today, but also not something we want to forget about. - -Alison -
-
- - -##### Files -[File: `AG.2022-1216.awk_split_strand.sh`](./notebook/AG.2022-1216.awk_split_strand.sh) - - -### Email: *More trinity thoughts* -2022-1216-1219 -
-Click to view - - -#### 1: Alison → Me `Friday, 2022-1216, 18:13` -I implemented the bedtools strategy we discussed and my intuition that rcor was more helpful than hurtful seems to be correct. Powerpoint attached with more details. There is really absolutely no reason to work on this over the weekend. - -Alison -
-
- - -##### File -[File: `AG.2022-1216.trinity_behavior.pptx`](./notebook/AG.2022-1216.trinity_behavior.pptx) - -
-Click to view - - -#### 2: Me → Alison `Monday, 2022-1219, 11:49` -Thanks, Alison. This is great info. Apologies for the very long message that follows: I took time to consolidate my thoughts and finish writing an overview of important parameters for us to consider moving forward; that, in turn, required me to finish writing a brief overview of what `PASA` does, which is also important for informing our next steps. (Both those things were on my to-do list, so I can now scratch them off.) - -So, everything in your *‘Things that might help’* (slide 4 of `trinity_behavior.pptx`) bullet is reasonable and either easy or relatively easy to implement. (However, I need to study more on the UMI filtering. If I remember correctly, I was trying to get straightforward answers to questions such as, ‘What are the required infiles, which `umitools` functions do I run, do I need to explicitly specify the UMIs, etc.?’). - -After writing up this message, I will begin implementing the rcor-only processing (i.e., preprocessing of reads without running `trim_galore`) and `STAR` multi-hit-modes for ‘5’ and ‘15’ (and perhaps other values). - -Another thing: Sorry, I’m not understanding your `bedtools` experiments: I must be missing something. When you’re in the office, do you mind explaining them to me again? - - -\# =========================================================== -Anyway, if we think of the general, overarching process for this transcriptome-assembly work in three steps, where step 1 is generating/preprocessing the infiles for running `Trinity` GF and GG modes, step 2 is running `Trinity` GG and GF modes, and step 3 is running `PASA` with the `Trinity` GG and GF outfiles, then I think we should prioritize optimizing steps 1 and 3 prior to tuning experiments with step 2. In Brian’s papers, documentations, and comments in the community message boards, the default `Trinity` parameters are shown to do “well enough” under most conditions, including those for both gene-sparse and gene-dense genomes (provided we use stranded RNA-seq and invoke `--jaccard_clip`). So, in addition to that, I go over my reasoning for that assessment below and, based on your work over the last few days, I think we’re not far from achieving the goal of optimizing steps 1 and 3. TLDR: I think that the correct tuning of `PASA` parameters ‘`--stringent_alignment_overlap`’ and ‘`--gene_overlap`’ has strong potential to achieve the goals we want for the transcriptome assembly. Another reason to get steps 1 and 3 reasonably “right” is that I think the parameters will hold steady regardless of the source/conditions of the infile, i.e., they won’t need to be changed if we’re using Q, G1, IP, IN, one knockout model, another knockout model, etc. I am not so sure about that for step 2 and would want to message Brian about it. - -So, we’re now on our way to determining ideal conditions for step 1. But regarding step 3, the running of `PASA`, there are two parameters to check and consider adjusting before diving into any tuning of `Trinity` parameters. One parameter is ‘`--gene_overlap`’ and the other is ‘`--stringent_alignment_overlap`’. Here’s what they do, which informs why I think they deserve our attention: - -- `--stringent_alignment_overlap` - + “`(suggested: 30.0) overlapping transcripts must have this min % overlap to be clustered`” (from `Launch_PASA_pipeline.pl --help`) - + By default, `PASA` clusters alignments\* with minimal overlap (e.g., if there’s a situation in which two transcripts have only a tiny amount of overlap, they are nonetheless clustered together and become one gene/feature ~~annotation~~transcript in the assembly), but this may not be ideal for gene-dense genomes such as *S. cerevisiae* - + Since *S. cerevisiae* gene density is quite high, and since we expect transcripts from neighboring genes to overlap often, especially in their UTRs, I ran `Launch_PASA_pipeline.pl` with ‘`--stringent_alignment_overlap 30.0`’ (the value suggested by Brian in both the documentation and in my messages with him) - + However, based on what you’re seeing, it is perhaps worth testing adjustments to this value or removing this parameter altogether (and thus running `PASA` in its default mode) - * My thinking here—and please definitely correct me if I’m wrong—is that, if we see expression that covers multiple genes/features, we want big, long `Trinity`/`PASA`-determined transcripts that reflect those and not necessarily the individual genes (I guess these kinds of `Trinity`/`PASA`-determined transcripts would appear unnecessarily fragmented to us, right?) - * This is what, if I remember correctly when I was looking at things in `IGV` with you at your computer, we want, right? - + Let’s talk about the above and, in general, `--stringent_alignment_overlap` when we’re both in the office -- `--gene_overlap` - + From `Launch_PASA_pipeline.pl --help`: “`(suggested: 50.0) transcripts overlapping existing gene annotations [e.g., "Saccharomyces_cerevisiae.R64-1-1.108.gff3"] are clustered; intergenic alignments are clustered by default mechanism`” - + With the `param_gene-overlap_TRUE/` outfiles, I ran `Launch_PASA_pipeline.pl` with ‘`--stringent_alignment_overlap 30.0 --gene_overlap 50.0`’ - + With `param_gene-overlap_FALSE/` outfiles, I ran `Launch_PASA_pipeline.pl` with ‘`--stringent_alignment_overlap 30.0`’ and no call to ‘`--gene_overlap`’ - * So, with these outfiles, `PASA` was run in such a way that it did not reference any provided annotations (in our case, "`Saccharomyces_cerevisiae.R64-1-1.108.gff3`") - * And thus, alignments in gene-poor regions were clustered with the default mechanism of “any-percent overlap,” and alignments in gene-dense regions were clustered such that they must have a minimum overlap of 30% to be clustered (i.e., considered one gene/feature ~~annotation~~transcript and not separate gene/feature ~~annotation~~transcript) - -I think it will be good if you do rough comparisons of selected data from `param_gene-overlap_TRUE` (what I think you’ve looked at already) versus `param_gene-overlap_FALSE`. For example, are we roughly seeing more of what we want with one versus the other? - - -\# -------------------------- -\*A rough overview of what PASA does: -1. *Optional step:* Identify evidence of polyadenylation in Trinity GF and GG .fasta infiles - a. If evidence of polyadenylation is found, then strip the poly-A and discard low-quality sequences - b. *I ran this optional step* -2. Simultaneously align Trinity GF and GG .fasta files to a reference genome using gmap and/or blat and/or minimap2 -3. Identify and separate valid alignments from invalid alignments - a. PASA uses only “near-perfect” alignments, i.e., those that align with a percent identity of ≥95% along a high percentage, ≥90%, of the transcript length - b. *The following is not necessarily relevant for our work but is relevant to understand what PASA is doing:* Each alignment is required to have consensus splice sites at all inferred intron boundaries -4. Assemble the alignments - a. Valid transcript alignments are clustered based on genome mapping location and assembled into gene/feature structures - b. *The following is not necessarily relevant for our work but is relevant to understand what PASA is doing:* - i. Where there is evidence of alternative transcript from, e.g., splicing events, transcript alignments are assembled into gene structures that include the maximal number of compatible transcript alignments - ii. Here, compatible transcript alignments are defined as those with identical gene/feature structures in their regions of overlap -5. Group alternatively spliced isoforms (again, *not necessarily relevant for our work but relevant to understand what PASA is doing*) -6. Alignment assemblies that (i) map to the same genomic locus, (ii) significantly overlap, and (iii) are transcribed on the same strand are grouped into clusters of assemblies -7. Automatic genome annotation - a. *I haven’t done this or really investigated how PASA does this yet* - b. `#TODO` `#MAYBE` - - -\# =========================================================== -Once we’re fairly secure in our choices for steps 1 and 3, we can, if necessary, move on to running experiments to tune `Trinity` parameters such as `--min_glue`. As a reminder, here’s the documentation snippet for `--min_glue`: ->"`--min_glue` will increase the stringency of the `inchworm` contig clustering, and ... can result in more fragmented assemblies. Decreasing it can cause other problems, such as over-clustering." - -In my notes, I wrote to myself to potentially test values of ‘1’, ‘2’, and ‘4’ for `--min_glue`; this is based on the parameter optimization work of [McIlwain et al.](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4889671/) So far, we’ve looked at results with ‘1’ (the default setting for `--min_glue`); soon, we can perhaps move on to ‘2’ and ‘4’. `--min_glue` is like PASA’s `--stringent_alignment_overlap` and `--gene_overlap` in that increasing their values can also result in “more fragmented” assemblies. - - -\# -------------------------- -In addition to `--min_glue`, `Trinity` parameters to consider testing, alone or in combination, are `--min_kmer_cov`, `--min_iso_ratio`, `--glue_factor`, and `--normalize_max_read_cov`: - -- `--min_kmer_cov` - + "...with a setting of 2, it means that singleton k-mers will not be included in initial `Inchworm` contigs (suggested by the `Trinity` team)" - + Values to potentially test: 1, 2, 4, 8, 16, 32, 64, 128, 256, 512, 1024 - + Default: 1 -- `--min_iso_ratio` - + "`--min_iso_ratio` just takes the kmer abundance into account when doing the `inchworm` contig clustering, mainly to prevent very lowly expressed contigs from being clustered together with highly expressed contigs" - + Values to potentially test: 0.01, 0.05, #TBD - + Default: 0.05 -- `--min_glue` - + "`--min_glue` will increase the stringency of the `inchworm` contig clustering, and ... can result in more fragmented assemblies. Decreasing it can cause other problems, such as over-clustering." - + Values to potentially test: 1, 2, 4 - + Default: 2 -- `--glue_factor` - + "`--glue_factor` increases the `--min_glue` value on a per inchworm contig pair basis such that it increases the support required based on the kmer coverage of each of the contigs. That is to reflect that more highly expressed contigs (higher kmer coverage) should have more evidence (reads) when linking them together." - + Values to potentially test: 0.01, 0.05, #TBD - + Default: 0.05 -- `--normalize_max_read_cov` - + "It means that 'poorly covered regions are unchanged, but reads are down-sampled in high-coverage regions (see slide 16 at link)" - + Values to potentially test: 25, 50, 100, 200 - + Default: 200 - - -\# =========================================================== -Also, I didn’t work on anything over the weekend `:D`. - --Kris -
-
- - -### Email: *Update* -2022-1221-1222 -
-Click to view - - -#### 1: Me → Alison `Monday, 2022-1221, 12:02` -Hi Alison, - -Thanks for the great info on the alignments—I will generate files using local (soft-clipping) alignment as you suggested. I think it has potential to improve our downstream transcript constructions. - -Yesterday, I figured out the issue for why our combined --gene_overlap/--stringent_alignment_overlap files looked the same as our --stringent_alignment_overlap files: It turns out that the arguments --gene_overlap and --stringent_alignment_overlap are mutually exclusive, and if both are called at the same time, then --stringent_alignment_overlap takes precedence. This was not really discussed in or clear from the PASA documentation; I touched base with Brian, and he will update the documentation to make this clear. - -Now, I'm setting up and running experiments for --gene_overlapalone, --stringent_alignment_overlap, and default (i.e., neither --gene_overlap nor --stringent_alignment_overlap). - -Also, just want to give a heads up that our symlinks in gff3s_2022-1214/param_gene-overlap_TRUE are now (or soon will be) broken, but the ones in gff3s_2022-1214/param_gene-overlap_FALSE should still be working. - -Going to try to get you some more gff3s for analysis before I'm out and about tonight and tomorrow. - -Thanks, -Kris - - -#### 2: Alison → Me `Monday, 2022-1221, 12:07` -Awesome! Enjoy your trip and holiday! If you aren't able to get me new files, it's totally okay. - -Alison - - -#### 3: Me → Alison `Monday, 2022-1221, 17:50` -Thank you! Each PASA job is taking about 4–6 hours to complete with 8 CPUs per job, and most are still running or are in queue status right now. I expect that the jobs will run through the night and most, if not all, of the gff3s will be ready tomorrow. So, I should have most or all of them organized and symlinked for you by the time you come into lab. - -From there, I'll move on to writing/adjusting code for the other suggestions you mentioned (e.g., multi-hit modes with 5 and 15 multi-mappers, rcor with soft-clipping allowed, etc.) and the blacklist work. Then, I'll begin to dive into some of the eyeballing work that you're doing now, and I'll use your bedtools scripts to run the same calculations that you are. Between that and the need to put together a PowerPoint presentation, I suspect I'll have plenty to do during your week off. - -Thanks again, -Kris - - -#### 4: Me → Alison `Tuesday, 2022-1222, 11:57` -Hi Alison, - -Many of the PASA jobs are taking a very long time to complete (≥22 hours). This is surprising to me. I am looking into it now; so far, everything seems OK, just slow. - -Anyway, I'm sending you the gff3s from the jobs that have already completed. They're in a zip file; I didn't want to do the symlinking until all jobs have completed. - -Here's how to delineate experiment conditions: -- PASA parameters - + stringent-alignment-overlap = PASA run with --stringent_alignment_overlap *(many of the jobs have not yet been completed)* - + gene-overlap = PASA run with --gene_overlap *(most of the jobs have not yet completed)* - + minimal-overlap = PASA run with neither of the above, i.e., the default method *(these were the last-submitted jobs, so none have completed yet)* -- read preprocessing - + .un_ = unprocessed data - + .trim.un_ = trim_galore-processed data - + .trim-rcor. = trim_galore- and rcor-processed data - + *haven't yet generated the other datasets we talked about* - -For each un- or preprocessed sample, I ran PASA --stringent_alignment_overlap with 10.0 20.0 30.0 40.0 50.0 60.0 70.0 80.0 90.0. I did the same for PASA --gene_overlap. I was thinking we can start with simple comparisons and work from there, starting from, for example, 30.0 for PASA --stringent_alignment_overlap and 50.0 for PASA --gene_overlap, and then branching out as needed. No need to examine everything, I think: just as needed. - -It may be useful to quickly eyeball some the datasets that are available now, despite being incomplete, and despite some perhaps being not the most useful values for --stringent_alignment_overlap and --gene_overlap. - -Thanks, -Kris - - -#### 5: Me → Alison `Tuesday, 2022-1222, 12:00` -Also, if you have any questions or anything, cc kalavattam@gmail.com: I'll see them sooner. - - -#### 6: Alison → Me `Tuesday, 2022-1222, 12:44` -Hi Kris - - -I think the server is just slow right now since so many people are remote between the holidays and snowy Seattle. I will try and take a look at the files sometime this afternoon. For future reference, could you add the relevant settings to the files themselves, not just the folder names? It makes it easier for me to know what I am looking at in IGV. - -Feel free to email me while I am out -- my work email goes to my phone, and I will monitor it in case anything comes up. I am trying not to do a ton of computation work over the holiday, but if I am tempted and learn anything interesting, I will let you know. - -Alison - - -#### 7: Alison → Me `Tuesday, 2022-1222, 14:12` -I went ahead and tried to compare different PASA settings with the same alignment conditions. I was able to use multi hit mode 10, local alignment and compare stringent 60, stringent 80 and gene overlap 50 - of these gene overlap 50 seemed to do better by a wide margin using my mRNA test (1470 correct vs 1316 correct = 11% improvement). I would be curious if this pattern holds across alignment methods/PASA settings, but it seems like those jobs haven't fully run yet so it might be hard to tell. - -Alison -
-
- - -### Email: *Preprocessing - more thoughts!* -2022-1222 -
-Click to view - - -#### 1: Alison → Me `Tuesday, 2022-1222, 16:55` -I went ahead and looked at the bams directly in IGV, and it was pretty interesting. I think there might be some additional alignment settings that matter a lot (although if they matter to trinity is another matter). Let me know what you think when you get the chance. - -Enjoy your trip and no rush on this! I may or may not email you more before I am off - will depend on if I find anything else noteworthy. - -Best -Alison -
-
- - -##### Files -[File: `AG.2022-1222.preprocessing_more_thoughts.pptx`](./notebook/AG.2022-1222.preprocessing_more_thoughts.pptx) - - -### Email: *Path to my genome directories and files* -2023-0105 -
-Click to view - - -#### 1: Me to Alison `2023-0105, 13:30` -I moved my '`genomes/`' directory from my `${HOME}` to '`~/tsukiyamalab/kalavatt/`' - -You can find the `.gff3` that I use for `PASA --gene_overlap` here: '`~/tsukiyamalab/kalavatt/genomes/sacCer3/Ensembl/108/gff3`' - - -#### 2: Alison to Me, `2023-0105, 15:00` -Hi Kris - - -I don't have permission to access that folder. gene-overlap does not appear to be throwing out intergenic transcripts, so exactly what it is doing is a bit opaque to me. If there a before and after PASA gff3? Just curious what changes are being made. - -Alison - - -#### 3: Me to Alison, `2023-0105, 16:57` -You should be able to access '`~/tsukiyamalab/kalavatt/genomes/sacCer3/Ensembl/108/gff3`' now. - -Regarding what the function of the parameter `--gene_overlap`, I’ve copied the text from a 12/19 email, *“More trinity thoughts”*, below. - -There are no before-`PASA` `.gff3`s/`.gtf`s *per se* since `PASA` takes as input .fasta files output by Trinity (two `.fasta`s: one for Trinity GF and one for `Trinity` GG). `PASA` uses different aligners, including `gmap`, to align the `.fasta`s. `PASA` then judges the quality of the alignments and creates `.gff3`s/`.gtf`s for valid and invalid alignments (the script in the pipeline to check this is [`validate_alignments_in_db.dbi`](https://github.com/PASApipeline/PASApipeline/blob/master/scripts/validate_alignments_in_db.dbi); based on Brian’s advice, the pipeline is configured to call this script with parameters `--MIN_PERCENT_ALIGNED=75` `--MIN_AVG_PER_ID=95` `--NUM_BP_PERFECT_SPLICE_BOUNDARY=0`; other parameters are set to defaults). Finally, another intermediate file in the pipeline is `*.pasa_assemblies.{gff3,gtf}`; this is the penultimate intermediate file, generated prior to the final `*compreh_init_build.gff3`. Perhaps you could examine this `*.pasa_assemblies.{gff3,gtf}`? - -Regarding the tuning of `--min_glue` and/or other `Trinity` parameters: Since he knows `Trinity`/`PASA`/etc. inside and out, we need to give Brian precise descriptions of the issues we are encountering, including visual examples, and then get his take on potentially useful options for `Trinity` parameterization in the context of what we’re seeing. Can you make a `Word` document (or something like that) similar to the previous one you did for the issues, written descriptions, and examples? - --Kris -
-
- -*Edited portion of email from 12/19:* -\# =========================================================== -So, we’re now on our way to determining ideal conditions for step 1. But regarding step 3, the running of `PASA`, there are two parameters to check and consider adjusting before diving into any tuning of `Trinity` parameters. One parameter is ‘`--gene_overlap`’ and the other is ‘`--stringent_alignment_overlap`’. Here’s what they do, which informs why I think they deserve our attention: -- `--stringent_alignment_overlap` - + “(suggested: 30.0) overlapping transcripts must have this min % overlap to be clustered” (from `Launch_PASA_pipeline.pl --help`) - + By default, `PASA` clusters alignments\* with minimal overlap (e.g., if there’s a situation in which two transcripts have only a tiny amount of overlap, they are nonetheless clustered together and become one gene/feature annotation in the assembly), but this may not be ideal for gene-dense genomes such as *S. cerevisiae* - + Since *S. cerevisiae* gene density is quite high, and since we expect transcripts from neighboring genes to overlap often, especially in their UTRs, I ran `Launch_PASA_pipeline.pl` with ‘`--stringent_alignment_overlap 30.0`’ (the value suggested by Brian in both the documentation and in my messages with him) - + However, based on what you’re seeing, it is perhaps worth testing adjustments to this value or removing this parameter altogether (and thus running `PASA` in its default mode) -- `--gene_overlap` - + From `Launch_PASA_pipeline.pl --help`: “(suggested: 50.0) transcripts overlapping existing gene annotations \[e.g., "`Saccharomyces_cerevisiae.R64-1-1.108.gff3`"\] are clustered; intergenic alignments are clustered by default mechanism” -
-
- -\# -------------------------- -\*A rough overview of what `PASA` does: -1. *Optional step:* Identify evidence of polyadenylation in `Trinity` GF and GG `.fasta` infiles - 1. If evidence of polyadenylation is found, then strip the poly-A and discard low-quality sequences - 2. *I ran this optional step* -2. Simultaneously align `Trinity` GF and GG `.fasta` files to a reference genome using `gmap` and/or `blat` and/or `minimap2` -3. Identify and separate valid alignments from invalid alignments - 1. `PASA` uses only “near-perfect” alignments, i.e., those that align with a percent identity of ≥95% along a high percentage—≥90%—of the transcript length - 2. *The following is not necessarily relevant for our work but is relevant to understand what `PASA` is doing:* Each alignment is required to have consensus splice sites at all inferred intron boundaries -4. Assemble the alignments - 1. Valid transcript alignments are clustered based on genome mapping location and assembled into gene/feature structures - 2. *The following is not necessarily relevant for our work but is relevant to understand what `PASA` is doing:* - 1. Where there is evidence of alternative transcript from, e.g., splicing events, transcript alignments are assembled into gene structures that include the maximal number of compatible transcript alignments - 2. Here, compatible transcript alignments are defined as those with identical gene/feature structures in their regions of overlap -5. Group alternatively spliced isoforms (again, *not necessarily relevant for our work but relevant to understand what `PASA` is doing*) -6. Alignment assemblies that (i) map to the same genomic locus, (ii) significantly overlap, and (iii) are transcribed on the same strand are grouped into clusters of assemblies -7. Automatic genome annotation - 1. *I haven’t done this or really investigated how `PASA` does this yet* - 2. `#TODO` `#MAYBE` -
-
- -\# =========================================================== -Once we’re fairly secure in our choices for steps 1 and 3, we can—if necessary—move on to running experiments to tune `Trinity` parameters such as `--min_glue`. As a reminder, here’s the documentation snippet for `--min_glue`: - -"`--min_glue` will increase the stringency of the inchworm contig clustering, and ... can result in more fragmented assemblies. Decreasing it can cause other problems, such as over-clustering." - -In my notes, I wrote to myself to potentially test values of ‘1’, ‘2’, and ‘4’ for `--min_glue`; this is based on the parameter optimization work of McIlwain et al. So far, we’ve looked at results with ‘1’ (the default setting for `--min_glue`); soon, we can perhaps move on to ‘2’ and ‘4’. `--min_glue` is like PASA’s `--stringent_alignment_overlap` and `--gene_overlap` in that increasing their values can also result in “more fragmented” assemblies. -
-
- -\# -------------------------- -In addition to `--min_glue`, `Trinity` parameters to consider testing—alone or in combination—are `--min_kmer_cov`, `--min_iso_ratio`, `--glue_factor`, and `--normalize_max_read_cov`: -- `--min_kmer_cov` - + "...with a setting of 2, it means that singleton k-mers will not be included in initial Inchworm contigs (suggested by the `Trinity` team)" - + Values to potentially test: 1, 2, 4, 8, 16, 32, 64, 128, 256, 512, 1024 - + Default: 1 -- `--min_iso_ratio` - + "`--min_iso_ratio` just takes the kmer abundance into account when doing the inchworm contig clustering, mainly to prevent very lowly expressed contigs from being clustered together with highly expressed contigs" - + Values to potentially test: 0.01, 0.05, #TBD - + Default: 0.05 -- `--min_glue` - + "`--min_glue` will increase the stringency of the inchworm contig clustering, and ... can result in more fragmented assemblies. Decreasing it can cause other problems, such as over-clustering." - + Values to potentially test: 1, 2, 4 - + Default: 2 -- `--glue_factor` - + "`--glue_factor` increases the `--min_glue` value on a per inchworm contig pair basis such that it increases the support required based on the kmer coverage of each of the contigs. That is to reflect that more highly expressed contigs (higher kmer coverage) should have more evidence (reads) when linking them together." - + Values to potentially test: 0.01, 0.05, #TBD - + Default: 0.05 -- `--normalize_max_read_cov` - + "It means that 'poorly covered regions are unchanged, but reads are down-sampled in high-coverage regions (see slide 16 at link)" - + Values to potentially test: 25, 50, 100, 200 - + Default: 200 -
-
- - -### Email: *`.bam`s and `.bw`s galore available in...* -`~/assess_transcriptome_assemblies/{bams,bws}_individual_merged_2023-0105` -2023-0105 -
-Click to view - - -#### 1: Me to Alison, `2023-0105, 14:59` -The deepTools bam-to-bigwig generation jobs are still running, so not all .bws are available yet—and I just generated them for MAPQ0. - - -#### 2: Alison to me, `2022-0105, 15:00` -Sounds good! -
-
- - -### Email: *Update* -2023-0105 -
-Click to view - - -#### 1: Alison to me, `2023-0105, 16:25` -I've been staring at these annotations, and I am feeling more confident that the mRNA test is OK. If I had to pick right now, the winner would be: trim_and_rcor, Gene_overlap_30, multi hit mode 10, End to End. - -If you could get the pasa read outs for: -- trim_and_rcor, Gene_overlap_30, multi hit mode 10, End to End -- trim_and_rcor, Gene_overlap_60, multi hit mode 1, End to End -- trim_only, Gene_overlap_30, multi hit mode 10, End to End -- trim_and_rcor, stringent_overlap_20, multi hit mode 10, End to End -- trim_and_rcor, stringent_overlap_30, multi hit mode 10, End to End -- trim_and_rcor, stringent_overlap_20, multi hit mode 10, End to End -- unprocessed, min_overlap, multi hit mode 1, Local - -If you could run the "trim_and_rcor, Gene_overlap_30, multi hit mode 10, End to End" settings for every available reference gtf, that would be of interest to me. - -Overall, most of the issues the gene overlap had were issues that every single gff seemed to have... I think it's time to try different min_glue settings. - -Alison - - -#### 2: Me to Alison, `2023-0105, 16:58` -Sounds good. - -If you don’t mind, please send me examples of the mentioned issues with screenshots for when I consult Brian Haas about `--min_glue` parameterization (see my other email). - -When you say “every available reference gtf”, do you mean the four we touched on earlier: Ensembl, SGD, “combined”, and the 3’/5’ sequencing one you mentioned? If so, can you point me to this last one? - --Kris - - -#### Notes from related discussion with AG - -##### Snippets -- "low expression → seeing more fragmentation where expect larger..." ← *What was I writing here?* -- "throw out below..." ← *What was I writing here?* -- "PASA ± 10..." ← *What was I writing here?* -- "names then metrics" ← *Is this in reference to the dataframe AG showed?* -- Try `PASA` "gene_overlap mode" with the following `gtf`s/`gff`s - + Ensemble `gff3` - + SGD `gff3` - + `combined.gtf` "→ can open the file to see the documentation on how it was made" - + annotations fr/3'/5'/etc. sequencing (see [here](#downloading-and-link-to-the-files-and-notes-etc)) - + Steinmetz et al., 2013 (see [here](#alison-to-me-2023-0106-1740)) -- AG requested a ___"definitive bigwig"___ ← Need to think more about this -- AG mentioned that, because `Trinity` defines boundaries with a k-mer based approach, it does a less-than-ideal job defining transcript boundaries ← Interesting, is this correct? *Need to follow up on this* -- AG thinks we are near the time when we need to tune `Trinity` parameter `--min_glue` -- We discussed the possibility that the presence of chromosome annotation was disrupting the `PASA` "gene_overlap mode" method - + I sought clarification from Brian Haas (see below) - + `#ANSWER` It's not - * Intergenic transcripts are built (clustered) using the default ("minimal overlap") method - * Genic transcripts are built (clustered) using the default ("gene_overlap mode") method - - -##### Posting to the PASA forum: *Questions: Running Launch_PASA_pipeline.pl in "gene_overlap mode" with a gff3 that contains whole-chromosome annotations: Effect on how --gene_overlap operates?* - -###### Me to Brian, `2023-0105, 17:48` -Hi Brian, - -Happy New Year! When calling `Launch_PASA_pipeline.pl` in "gene_overlap mode", I used "`Saccharomyces_cerevisiae.R64-1-1.108.gff3`" as the corresponding annotation (i.e., the input to argument `--annots`). - -However, we just realized that "`Saccharomyces_cerevisiae.R64-1-1.108.gff3`", an official Ensembl annotation for *S. cerevisiae*, includes annotations for whole chromosomes among its many features; these annotations for whole chromosomes appear as giant chromosome-wide blocks when viewing the gff3 in IGV and other genome browsers (please see attached screenshot). This concerned us because it raises the possibility that, when using gene_overlap mode, all transcripts would be clustered regardless of the percent value supplied to `--gene_overlap` because all transcripts overlap the chromosome annotation. Do you know if this is the case? If so, then it would appear that I need to edit the Ensembl gff3 to remove the whole-chromosome annotations—and perhaps other features. In that case, do you have any opinions on what features I should specifically retain in the gff3? I was thinking to cut everything out except mRNA annotations? Or maybe that doesn't really matter—especially in comparison to the whole—chromosome annotations. - -Anyway, thank you, -Kris - -

- drawing -

- - -###### Brian to me, `2023-0106, 06:42` -Hi Kris, - -I'm pretty sure PASA will parse and use only the features that are annotated as genes. The chromosome features are probably labeled as regions or some other non-gene type feature. If you're concerned, you could just edit them out of the gff3 before importing it into pasa. - -best, - -~b -
-
- - -### Email: *ncRNA annotations* -2023-0105 -
-Click to view - - -#### Alison to me, `2023-0105, 17:06` -another yeast annotation - - -#### Steve Hahn to Toshi Tsukiyama, `2022-0707, 12:24` -Hi Toshi, - -I dont know if you already know this, but Sebastian Marquadt sent me the links below for the publication and genome data set of annotated ncRNAs in yeast and arabidopsis. Hope this is useful! - -Steve - -*Begin forwarded message:* - - -#### *"followup from question at meeting"*, Sebastian Marquardt to Steve Hahn, `2022-0628, 9:52` -Dear Steven, - -It is a great pleasure interacting with you at the meeting. - -We performed a new annotation in S. cerervisiae (and the plant Arabidopsis) based on 5´, 3´, ONT and nascent transcription methods. The focus was not really on identifying ncRNAs, but for our work we often want metagene plots with accurate boundaries, also for mRNAs. - -The details are in this manuscript: https://link.springer.com/article/10.1186/s12859-021-04208-2 - -You can find the associated genome annotations files here: -https://github.com/Maxim-Ivanov/Ivanov_et_al_2021/tree/main/Annotation/Saccharomyces_cerevisiae - -My question is if adding the transcripts (and possibly also genes since the start site positions can be different) would help you to find more matches between where the factors bind and a transcription event occurs. - -Hope it helps, -Sebastian - - -##### Downloading and link to the files, and notes, etc. -```bash -#!/bin/bash - -transcriptome && cd "results/2022-1201/files_features" -mkdir "Ivanov-et-al" && cd "Ivanov-et-al/" -pwd -# /Users/kalavatt/projects-etc/2022_transcriptome-construction/results/2022-1201/files_features/Ivanov-et-al - -https="https://raw.githubusercontent.com/Maxim-Ivanov/Ivanov_et_al_2021/main/Annotation/Saccharomyces_cerevisiae" -curl "${https}/Called_yeast_genes.bed" -o "called_yeast_genes.bed" -curl "${https}/Called_yeast_genes_with_flanks.bed" -o "called_yeast_genes_with_flanks.bed" -curl "${https}/Called_yeast_lncRNAs.bed" -o "called_yeast_lncRNAs.bed" -curl "${https}/Called_yeast_transcripts.bed" -o "called_yeast_transcripts.bed" -curl "${https}/Fusion_yeast_genes.bed" -o "fusion_yeast_genes.bed" -curl "${https}/Fusion_yeast_transcripts.bed" -o "fusion_yeast_transcripts.bed" - -transcriptome && cd "results/2022-1201/files_features" -``` -
-
- - -###### Files -[File: `called_yeast_genes.bed`](./file_features/Ivanov-et-al/called_yeast_genes.bed) -[File: `called_yeast_genes_with_flanks.bed`](./files_features/Ivanov-et-al/called_yeast_genes_with_flanks.bed) -[File: `called_yeast_lncRNAs.bed`](./files_features/Ivanov-et-al/called_yeast_lncRNAs.bed) -[File: `called_yeast_transcripts.bed`](./files_features/Ivanov-et-al/called_yeast_transcripts.bed) -[File: `fusion_yeast_genes.bed`](./files_features/Ivanov-et-al/fusion_yeast_genes.bed) -[File: `fusion_yeast_transcripts.bed`](./files_features/Ivanov-et-al/fusion_yeast_transcripts.bed) - - -###### Notes -- [`04-Download_and_remap_published_Saccharomyces_datasets.sh`](https://github.com/Maxim-Ivanov/Ivanov_et_al_2021/blob/main/04-Download_and_remap_published_Saccharomyces_datasets.sh) - + This file contains Bash code to download and remap the following publicly available datasets (all obtained from Saccharomyces cerevisiae wild type strain BY4741 (S288C) grown in rich medium at 30 degrees Celsius): - + 1) ONT Direct RNA-seq (Garalde et al., 2018 - PMID 29334379); - + 2) CAGE-seq (Lu et al., 2019 - PMID 31076411); - + 3) 3'READS (Liu et al., 2017 - PMID 28916539); - + 4) NET-seq (Marquardt et al., 2014 - PMID 24949978); - + 5) NET-seq (Topal et al., 2019 - PMID 31558720); - + 6) TSS-seq (Malabat et al., 2015 - PMID 25905671); - + 7) Lexogen QuantSeq 3' mRNA-seq (Schmid et al., 2018 - PMID 30157438); -- [`05-Run_TranscriptomeReconstructoR_on_Saccharomyces_data.R`](https://github.com/Maxim-Ivanov/Ivanov_et_al_2021/blob/main/05-Run_TranscriptomeReconstructoR_on_Saccharomyces_data.R) - + This is the pipeline for de novo annotation of S.cerevisiae transcriptome (without correction by SacCer3 gene annotation); - + Observe that adjust_exons_of_long_reads() and detect_alignment_errors() calls were skipped, because yeast have only a few intronic genes; -- More info - + [GitHub repo](https://github.com/Maxim-Ivanov/Ivanov_et_al_2021) - + [Publication: *"TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes"*](https://link.springer.com/article/10.1186/s12859-021-04208-2) - -In my attempts to see if `TranscriptomeReconstructoR` is available on conda, I uncovered the program `Ryuto` and its publication -- [GitHub repo for `Ryuto`](https://github.com/studla/RYUTO/) -- [Publication](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2786-5) - -Found this review as well, which appears to be helpful -- [A simple guide to *de novo* transcriptome assembly and annotation](https://academic.oup.com/bib/article/23/2/bbab563/6514404) -- `#TODO` Read it in preparation for the presentation you will give on __Wednesday, January 11__ -- [File for "Raghavan, Kraft, Mesny, Rigerte, Simple guide to de novo transcriptome assembly and annotation, *Briefings Bioinf* 2022"](./notebook/Raghavan-et-al.review.pdf) - + [File for Table S1](./notebook/Raghavan-et-al.review.table-s1.csv) - + [File for Table S2](./notebook/Raghavan-et-al.review.table-s2.csv) - -This led me to Google "trinity versus stringtie", which resulted [this informative post](https://bioinformatics.stackexchange.com/questions/3201/difference-between-de-novo-transcriptome-assembly-methods#:~:text=stringTie%20is%20just%20looking%20at,them%20together%20into%20longer%20sequences.) -- [File](./notebook/) - - -### Email: *One more gtf* -2023-0105 -
-Click to view - - -#### Alison to me, `2023-0106, 17:40` -Steinmetz 2013 - - -##### Set up an appropriate file location for the file -```bash -#!/bin/bash - -transcriptome && cd "results/2022-1201/files_features" -mkdir "Steinmetz-et-al" && cd "Steinmetz-et-al/" - -# Save the file at this $(pwd) -pwd -# /Users/kalavatt/projects-etc/2022_transcriptome-construction/results/2022-1201/files_features/Steinmetz-et-al - -transcriptome && cd "results/2022-1201/files_features" -``` -
-
- - -##### File -[File: `GSE95556_Sc.cerevisiae.feature.anno_Steinmetz_2013.gtf`](./notebook/GSE95556_Sc.cerevisiae.feature.anno_Steinmetz_2013.gtf) - - -### Email: *Following up on PASA "gene_overlap mode"* -2023-0106 -
-Click to view - - -#### Me to Alison, `2023-0106, 12:13` -Hi Alison, - -Following up on our discussion yesterday, I heard back from Brian, who wrote, “PASA will parse and use only the features that are annotated as genes.” So, “gene_overlap mode” is not considering the chromosome annotation in the Ensembl gff3. - -In reviewing the PASA documentation, I was reminded that, when running PASA in “gene_overlap mode,” intergenic transcripts are clustered with the default “minimal overlap”/“any-percent overlap” method. This was in my notes in several places, but I had nevertheless forgotten about it, so sorry about that. - -Taking those two things together, I think that explains why we saw non-gene-overlapping transcripts in gene-poor regions (and it’s good that it’s not due to the chromosome annotations in the Ensembl gff3). Maybe we should focus on the “stringent_alignment_overlap method”? - --Kris -
-
- - -### Email: *Example of the metrics offered by PasaWeb* -2023-0106 -
-Click to view - - -#### Me to Alison, `2023-0106, 16:47` -Hi Alison, - -Please see below for an example of the metrics that are output by PASA. This is from PASAweb, which I decided to stay and try to get up and running. - -For __trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd__ (an example of something you have judged to be pretty good (but not without problems)) -

- drawing -

- -For __trinity_5781-5782_Q_IP_merged.rcor.multi-hit-mode_100_Local__ (an example of something you have judged to be not so great) -

- drawing -

- -I am not so sure how useful the metrics are. One obvious thing is that there are similar numbers of starting transcript sequences in both samples, but there are less assemblies in the second sample versus the first (19.6% less). I wonder if this tells us anything? It may be something we want to calculate for all of our samples, if we can collect the numbers quickly (and not through loading PASAweb for each one, which requires a good bit of manual work). - -Anyway, in the presentation I am working on, I will discuss various metrics that researchers use for determining the quality of the assembled transcriptomes. This is something I studied heavily at the start of my work on the project, but it was relegated to the back burner. We may incorporate some of those, in addition to the mRNA test and visual observations you are making. Many people recommend the program `DETONATE` (https://github.com/deweylab/detonate) for this purpose. - -I’ll also reach out to Brian again and ask him questions based on your findings. - -Have a good weekend, -Kris - - -#### Alison to me, `2023-0106, 17:57` -Hi Kris - - -I have attached my R table in .txt form, as well as a PowerPoint of examples/issues/some broad thoughts. I suspect this is not an exhaustive list of issues, but I think it's representative enough of some of the main things I am seeing. - -Based on this, I am not convinced that PASA web is high utility for us. It would be of some curiosity value what the range of possible alignments is, but I am not convinced that this will be particularly helpful in determining the "best" annotation. Looking through this detonate github repo, this seem like there is the potential to have decent indicators of annotation quality. Definitely looks promising and worth a try to me. - -Alison -
-
- - -##### Files -[File: `AG.2023-0106.Trinity_numbers.txt`](./notebook/AG.2023-0106.Trinity_numbers.txt) -[File: `AG.2023-0106.Trinity_optimization.pptx`](./notebook/AG.2023-0106.Trinity_optimization.txt) diff --git a/results/2022-1201/README.md b/results/2022-1201/README.md deleted file mode 100644 index 1b3c455..0000000 --- a/results/2022-1201/README.md +++ /dev/null @@ -1,25 +0,0 @@ - -How `Trinity` was called -- GF: `Trinity` genome-free mode -- GG: `Trinity` genome-guided mode -```txt -command_GF command_GG parameter value -TRUE TRUE --max_memory 50G -TRUE TRUE --CPU "\${SLURM_CPUS_ON_NODE}" (6) -TRUE TRUE --SS_lib_type FR -TRUE FALSE --seqType fq -TRUE FALSE --left "\${f_free_1}" -TRUE FALSE --right "\${f_free_2}" -TRUE TRUE --genome_guided_max_intron "\${intron}" (1002) -TRUE TRUE --jaccard_clip #SPECIFIED -TRUE TRUE --output "\${outdir}/\${prefix}" -TRUE TRUE --full_cleanup #SPECIFIED -TRUE TRUE --min_kmer_cov 1 -TRUE TRUE --min_iso_ratio 0.05 -TRUE TRUE --min_glue 2 -TRUE TRUE --glue_factor 0.05 -TRUE TRUE --max_reads_per_graph 200000 -TRUE TRUE --normalize_max_read_cov 200 -TRUE TRUE --group_pairs_distance 700 -TRUE TRUE --min_contig_length 200 -``` diff --git a/results/2022-1201/documentation_Launch-PASA-pipeline.txt b/results/2022-1201/documentation_Launch-PASA-pipeline.txt deleted file mode 100644 index 67d88ef..0000000 --- a/results/2022-1201/documentation_Launch-PASA-pipeline.txt +++ /dev/null @@ -1,93 +0,0 @@ -############################# Options ############################### -# -# * indicates required -# -# --config | -c * alignment assembly configuration file -# -# // spliced alignment settings -# --ALIGNERS aligners (available options include: gmap, blat, minimap2... -# can run using several, e.g., 'gmap,blat,minimap2') -# -N max number of top scoring alignments (default: 1) -# --MAX_INTRON_LENGTH | -I (max intron length parameter passed to GMAP or BLAT) -# (default: 100000) -# --IMPORT_CUSTOM_ALIGNMENTS_GFF3 only using the alignments supplied in the corresponding GFF3 -# file -# --trans_gtf incorporate cufflinks- or stringtie-generated transcripts -# -# -# // actions -# --create | -C flag, create database -# --replace | -r flag, drop database if -C is also given; this will DELETE -# all your data and it is irreversible -# --run | -R flag, run alignment/assembly pipeline -# --annot_compare | -A (see section below; can use with opts -L and --annots) -# compare to annotated genes -# --ALT_SPLICE flag, run alternative splicing analysis -# -# -# // input files -# --genome | -g * genome sequence FASTA file (should contain annot db asmbl_id -# as header accession) -# --transcripts | -t * transcript db -# -f file containing a list of fl-cdna accessions -# --TDN file containing a list of accessions corresponding to -# Trinity (full) de novo assemblies (not genome-guided) -# -# -# // polyAdenylation site identification ** highly recommended ** -# -T flag, transcript db were trimmed using the TGI seqclean tool -# -u value, transcript db containing untrimmed sequences (input -# to seqclean) -# -# -# // Misc -# --TRANSDECODER flag, run transdecoder to identify candidate full-length -# coding transcripts -# --CPU multithreading (default: 2) -# --PASACONF path to a user-defined pasa.conf file containing mysql -# connection info -# (used in place of the $PASAHOME/pasa_conf/conf.txt file) -# (and allows for users to have their own unique mysql -# connection info) -# (instead of the pasa role account) -# -# -d flag, debug -# -h flag, print this option menu and quit -# -##################################################################### -# -# // Transcript alignment clustering options (clusters are fed into the PASA assembler): -# -# By default, clusters together transcripts based on any overlap (even 1 base!) -# -# Alternatives: -# -# --stringent_alignment_overlap (suggested: 30.0) overlapping transcripts must have this min -# % overlap to be clustered -# -# --gene_overlap (suggested: 50.0) transcripts overlapping existing gene -# annotations are clustered; intergenic alignments are -# clustered by default mechanism -# * if --gene_overlap, must also specify --annots with -# annotations in recognizable format (gtf, gff3, or data -# adapted) (just examines 'gene' rows, though) -# -# -# --INVALIDATE_SINGLE_EXON_ESTS invalidates single exon ests so that none can be built into -# pasa assemblies -# -# --transcribed_is_aligned_orient flag for strand-specific RNA-Seq assemblies, the aligned -# orientation should correspond to the transcribed orientation -# -##################################################################### -# -# // Annotation comparison options (used in conjunction with -A at top). -# -# -L load annotations (use in conjunction with --annots) -# --annots existing gene annotations in recognized format (gtf, gff3, -# or custom adapted) -# --GENETIC_CODE (default: universal, options: Euplotes, Tetrahymena, -# Candida, Acetabularia) -# -###################### Process Args and Options ##################### \ No newline at end of file diff --git a/results/2022-1201/documentation_Trinity.txt b/results/2022-1201/documentation_Trinity.txt deleted file mode 100644 index 7586238..0000000 --- a/results/2022-1201/documentation_Trinity.txt +++ /dev/null @@ -1,603 +0,0 @@ - -#NOTE #KA See https://github.com/trinityrnaseq/trinityrnaseq/blob/master/Trinity - -#!/usr/bin/env perl - -use strict; -use warnings; -use threads; -no strict qw(subs refs); - -use FindBin; -use lib ("$FindBin::RealBin/PerlLib"); -use File::Basename; -use Time::localtime; -use Cwd; -use Carp; -use COMMON; -use Getopt::Long qw(:config posix_default no_ignore_case pass_through gnu_compat no_auto_abbrev); -use Pipeliner; -use Fasta_reader; -use SAM_reader; -use SAM_entry; -use List::Util qw(min max); -use Data::Dumper; - - - -my $VERSION = "Trinity-v2.15.0"; -#my $VERSION = "__BLEEDING_EDGE__"; - - -my $ABSOLUTE_MIN_CONTIG_LENGTH = 100; # going shorter might lead to making too many intermediate files during the run. - - -BEGIN { - - $ENV{TRINITY_HOME} = "$FindBin::RealBin"; - -} - -open (STDERR, ">&STDOUT"); ## capturing stderr and stdout in a single stdout stream - - -#directory defnintions -my $ROOTDIR = "$FindBin::RealBin"; -my $UTILDIR = "$ROOTDIR/util"; -my $MISCDIR = "$UTILDIR/misc"; -my $INCHWORM_DIR = "$ROOTDIR/Inchworm/bin/"; -my $CHRYSALIS_DIR = "$ROOTDIR/Chrysalis"; -my $BUTTERFLY_DIR = "$ROOTDIR/Butterfly"; -my $COLLECTL_DIR = "$ROOTDIR/trinity-plugins/COLLECTL/collectl"; -my $TRINITY_PLUGINS_DIR = "$ROOTDIR/trinity-plugins"; -my $TRINITY_BIN_DIR = "$TRINITY_PLUGINS_DIR/BIN"; -my $PARAFLY = "$TRINITY_BIN_DIR/ParaFly"; -my $HTSLIB_DIR = "$ROOTDIR/trinity-plugins/htslib"; - -$ENV{LD_LIBRARY_PATH} .= ":${HTSLIB_DIR}"; - -if ($ENV{TRINITY_NO_RETRIES}) { - $PARAFLY .= " -max_retry 1 "; -} - -my $TRIMMOMATIC = "$ROOTDIR/trinity-plugins/Trimmomatic/trimmomatic.jar"; -my $TRIMMOMATIC_DIR = "$ROOTDIR/trinity-plugins/Trimmomatic"; - -$ENV{PATH} = "$ROOTDIR/trinity-plugins/BIN:$ENV{PATH}"; - -my $JAVA_VERSION_REQUIRED = 8; - -# Site specific setup - -my $USE_PERL_SCAFFOLDER = 1; # for testing purposes in chrysalis stage - -my $SYMLINK = "ln -sf"; - -my $KMER_SIZE = 25; - -my $INCHWORM_CUSTOM_PARAMS = ""; - -# option list: -my ($seqType, @left_files, @right_files, @single_files, $SS_lib_type, $min_contig_length, - $group_pairs_distance, $jaccard_clip, $show_advanced_options, - $output_directory, $prep_only - ); - - -# defaults: - -$output_directory = &create_full_path("trinity_out_dir", 0); - - -#variable for bowtie2 -my $bowtie2_path; -my $bowtie2_build_path; - - -# butterfly opts -$min_contig_length = 200; -$group_pairs_distance = 500; -my $path_reinforcement_distance; -my $PE_path_reinforcement_distance = 25; -my $SE_path_reinforcement_distance = 25; - -my $bfly_opts = ""; -my $bflyHeapSpaceMax = "10G"; -my $bflyHeapSpaceInit = "1G"; - -my $BFLY_JAR = ""; -my $JAVA_OPTS = ""; - -# butterfly path merging criteria -my $NO_PATH_MERGING = 0; -my $MIN_PER_ID_SAME_PATH; # leave these at the butterfy defaults -my $MAX_DIFFS_SAME_PATH; -my $MAX_INTERNAL_GAP_SAME_PATH; -my @BFLY_ALGORITHMS = ("ORIGINAL", "PASAFLY"); -my $BFLY_ALGORITHM = "ORIGINAL"; # default - -# misc opts -my $min_kmer_cov = 1; -my $meryl_opts = ""; -my $inchworm_cpu = 6; - -my $min_percent_read_iworm_kmers = -1; # experimental, off - -my $CPU = 2; -my $np = 1; -my $mpiexec = "mpiexec"; -my $bflyCPU; -my $bflyCalculateCPU = 0; -my $bflyGCThreads = 2; - -my $long_reads = ""; -my $LONG_READS_MODE = 0; -my $LONG_READS_SCAFFOLDING_FLAG = 0; - - -my $NO_SUPER_READS_FLAG = 0; - -## ADVANCED OPTIONS: - - -## Chrysalis opts -my $min_glue = 2; -my $min_iso_ratio = 0.05; -my $glue_factor = 0.05; -my $max_reads_per_graph = 200000; -my $max_reads_per_loop = 50000000; #MW: Set default to 50M, still fits into main memory -my $min_pct_read_mapping = 10; # set to 50 for phase 2 -my $chrysalis_output_dir = "chrysalis"; -my $NO_RUN_CHRYSALIS_FLAG = 0; - -my $NO_DISTRIBUTED_TRINITY_EXEC = 0; - -my $IWORM_CDHIT; - -my $help_flag; -my $advanced_help_flag; -my $SHOW_CITATION_FLAG = 0; - -my $show_version_flag = 0; - -## Kmer methods -my $kmer_method = ""; - -## Jellyfish -my $max_memory; - - -## Grid computing options: -my $grid_exec_toolname = ""; - -## Performance monitoring options -my $pm_logfile = "Trinity.timing"; -my $pm_trinity_startstring="NA"; -my $pm_trinity_endstring="NA"; -my $pm_trinity_start="NA"; -my $pm_trinity_end="NA"; -my $pm_inchworm_start="NA"; -my $pm_inchworm_end="NA"; -my $pm_chrysalis_start="NA"; -my $pm_chrysalis_end="NA"; -my $pm_left_fa_size="NA"; -my $pm_right_fa_size="NA"; -my $pm_single_fa_size="NA"; -my $pm_trinity_fa_size="NA"; -my $pm_trinity_arguments=""; -my $pm_inchworm_kmers=0; -my $pm_read_count="NA"; - -my $run_with_collectl = 0; -# flush each second, record procs+rest every 5 secs, use only process subsystem - -my $collectl_output_directory = "collectl"; -my $collectl_pid = 0; -my $collectl_out = ""; -my $collectl_titlename = ""; -my $start_dir = cwd(); -my $COLLECTL_INTERVAL_SECONDS = 60; - -## misc other opts, mostly for testing purposes -my $run_as_paired_flag = 0; ## in case we have paired reads in single fasta file, already oriented. -my $weldmer_size = 48; -my $FORCE_INCHWORM_KMER_METHOD = 0; - - -my $PARALLEL_IWORM_FLAG = 1; -my $NO_PARALLEL_IWORM = 0; - -## Quality trimming params -my $RUN_TRIMMOMATIC_FLAG = 0; -my $trimmomatic_quality_trim_params = "ILLUMINACLIP:$TRIMMOMATIC_DIR/adapters/TruSeq3-PE.fa:2:30:10 SLIDINGWINDOW:4:5 LEADING:5 TRAILING:5 MINLEN:25"; - -## Normalize reads -my $NORMALIZE_READS_FLAG = 0; ## now on by default, unless told not to via --no_normalize_reads! See below for logic. -my $NO_NORMALIZE_READS_FLAG = 0; ## set to turn off normalization (will be turned on if trinity_complete_flag and ! --normalize_reads set. -my $normalize_max_read_cov = 200; # better for polymorphic transcriptomes -my $normalize_max_CV = 10000; # effectively turn it off for this application. -my $NORMALIZE_BY_READ_SET = 0; -my $NO_PARALLEL_NORM_STATS = 0; - -my $grid_node_CPU = 1; -my $grid_node_max_memory = "1G"; - -my $min_eff_read_cov = 2.0; # min effective read coverage (#reads * read_len / transcript_len) - -my $FORCE_FLAG = 0; - -# Note: For the Trinity logo below the backslashes are quoted in order to keep -# them from quoting the character than follows them. "\\" keeps "\ " from occuring. - -my $MAX_CHRYSALIS_CLUSTER_SIZE = 25; # might need to set higher for highly polymorphic transcriptomes. - -my $JUST_NORMALIZE_READS_FLAG = 0; - -my $NO_SEQTK = 0; - - -my $singularity_img = ""; -my $singularity_extra_params = ""; -my $in_simg_mode = 0; # bit flag, indicate whether we're executing from within a singularity image. - - -my $trinity_banner = qq^ - ______ ____ ____ ____ ____ ______ __ __ - | || \\ | || \\ | || || | | - | || D ) | | | _ | | | | || | | - |_| |_|| / | | | | | | | |_| |_|| ~ | - | | | \\ | | | | | | | | | |___, | - | | | . \\ | | | | | | | | | | | - |__| |__|\\_||____||__|__||____| |__| |____/ - $VERSION -^; - -my $basic_usage = qq^ - ______ ____ ____ ____ ____ ______ __ __ - | || \\ | || \\ | || || | | - | || D ) | | | _ | | | | || | | - |_| |_|| / | | | | | | | |_| |_|| ~ | - | | | \\ | | | | | | | | | |___, | - | | | . \\ | | | | | | | | | | | - |__| |__|\\_||____||__|__||____| |__| |____/ - - $VERSION - -^; - -my $basic_usage = qq^ - - -############################################################################### -# -$trinity_banner -# -# -# Required: -# -# --seqType :type of reads: ('fa' or 'fq') -# -# --max_memory :suggested max memory to use by Trinity where limiting can be enabled. (jellyfish, sorting, etc) -# provided in Gb of RAM, ie. '--max_memory 10G' -# -# If paired reads: -# --left :left reads, one or more file names (separated by commas, no spaces) -# --right :right reads, one or more file names (separated by commas, no spaces) -# -# Or, if unpaired reads: -# --single :single reads, one or more file names, comma-delimited (note, if single file contains pairs, can use flag: --run_as_paired ) -# -# Or, -# --samples_file tab-delimited text file indicating biological replicate relationships. -# ex. -# cond_A cond_A_rep1 A_rep1_left.fq A_rep1_right.fq -# cond_A cond_A_rep2 A_rep2_left.fq A_rep2_right.fq -# cond_B cond_B_rep1 B_rep1_left.fq B_rep1_right.fq -# cond_B cond_B_rep2 B_rep2_left.fq B_rep2_right.fq -# -# # if single-end instead of paired-end, then leave the 4th column above empty. -# -#################################### -## Misc: ######################### -# -# --SS_lib_type :Strand-specific RNA-Seq read orientation. -# if paired: RF or FR, -# if single: F or R. (dUTP method = RF) -# See web documentation. -# -# --CPU :number of CPUs to use, default: $CPU -# --min_contig_length :minimum assembled contig length to report -# (def=$min_contig_length, must be >= $ABSOLUTE_MIN_CONTIG_LENGTH) -# -# --long_reads :fasta file containing error-corrected or circular consensus (CCS) pac bio reads -# (** note: experimental parameter **, this functionality continues to be under development) -# -# --genome_guided_bam :genome guided mode, provide path to coordinate-sorted bam file. -# (see genome-guided param section under --show_full_usage_info) -# -# --long_reads_bam :long reads to include for genome-guided Trinity -# (bam file consists of error-corrected or circular consensus (CCS) pac bio read aligned to the genome) -# -# --jaccard_clip :option, set if you have paired reads and -# you expect high gene density with UTR -# overlap (use FASTQ input file format -# for reads). -# (note: jaccard_clip is an expensive -# operation, so avoid using it unless -# necessary due to finding excessive fusion -# transcripts w/o it.) -# -# --trimmomatic :run Trimmomatic to quality trim reads -# see '--quality_trimming_params' under full usage info for tailored settings. -# -# --output :name of directory for output (will be -# created if it doesn't already exist) -# default( your current working directory: "$output_directory" -# note: must include 'trinity' in the name as a safety precaution! ) -# -# --full_cleanup :only retain the Trinity fasta file, rename as \${output_dir}.Trinity.fasta -# -# --cite :show the Trinity literature citation -# -# --verbose :provide additional job status info during the run. -# -# --version :reports Trinity version ($VERSION) and exits. -# -# --show_full_usage_info :show the many many more options available for running Trinity (expert usage). -^; - -my $full_usage = qq^ -# -# --no_super_reads :turn off super-reads mode -# -# --prep :Only prepare files (high I/O usage) and stop before kmer counting. -# -# --no_cleanup :retain all intermediate input files. -# -# --no_version_check :dont run a network check to determine if software updates are available. -# -# --no_symlink :dont symlink, just copy files instead (sets env var NO_SYMLINK=TRUE) -# -# --monitoring :use collectl to monitor all steps of Trinity -# --monitor_sec : number of seconds for each interval of runtime monitoring (default: $COLLECTL_INTERVAL_SECONDS) -# -# --no_distributed_trinity_exec :do not run Trinity phase 2 (assembly of partitioned reads), and stop after generating command list. -# -# --workdir :where Trinity phase-2 assembly computation takes place (defaults to --output setting). -# (can set this to a node-local drive or RAM disk) -# -#################################################### -# Inchworm and K-mer counting-related options: ##### -# -# --min_kmer_cov :min count for K-mers to be assembled by -# Inchworm (default: $min_kmer_cov) -# --inchworm_cpu :number of CPUs to use for Inchworm, default is min(6, --CPU option) -# -# --no_run_inchworm :stop after running jellyfish, before inchworm. (phase 1, read clustering only) -# -################################### -# Chrysalis-related options: ###### -# -# --max_reads_per_graph :maximum number of reads to anchor within -# a single graph (default: $max_reads_per_graph) -# --min_glue :min number of reads needed to glue two inchworm contigs -# together. (default: $min_glue) -# -# --max_chrysalis_cluster_size :max number of Inchworm contigs to be included in a single Chrysalis cluster. (default: $MAX_CHRYSALIS_CLUSTER_SIZE) -# -# --no_bowtie :dont run bowtie to use pair info in chrysalis clustering. -# -# --no_run_chrysalis :stop after running inchworm, before chrysalis. (phase 1, read clustering only) -# -##################################### -### Butterfly-related options: #### -# -# --bfly_algorithm : assembly algorithm to use. Options: @BFLY_ALGORITHMS -# -# --bfly_opts :additional parameters to pass through to butterfly -# (see butterfly options: java -jar Butterfly.jar ). -# (note: only for expert or experimental use. Commonly used parameters are exposed through this Trinity menu here). -# -# -# Butterfly read-pair grouping settings (used to define 'pair paths'): -# -# --group_pairs_distance :maximum length expected between fragment pairs (default: $group_pairs_distance) -# (reads outside this distance are treated as single-end) -# -# /////////////////////////////////////////////// -# Butterfly default reconstruction mode settings. -# -# --path_reinforcement_distance :minimum overlap of reads with growing transcript -# path (default: PE: $PE_path_reinforcement_distance, SE: $SE_path_reinforcement_distance) -# Set to 1 for the most lenient path extension requirements. -# -# -# ///////////////////////////////////////// -# Butterfly transcript reduction settings: -# -# --no_path_merging : all final transcript candidates are output (including SNP variations, however, some SNPs may be unphased) -# -# By default, alternative transcript candidates are merged (in reality, discarded) if they are found to be too similar, according to the following logic: -# -# (identity=(numberOfMatches/shorterLen) > 98.0% or if we have <= 2 mismatches) and if we have internal gap lengths <= 10 -# -# with parameters as: -# -# --min_per_id_same_path default: 98 min percent identity for two paths to be merged into single paths -# --max_diffs_same_path default: 2 max allowed differences encountered between path sequences to combine them -# --max_internal_gap_same_path default: 10 maximum number of internal consecutive gap characters allowed for paths to be merged into single paths. -# -# If, in a comparison between two alternative transcripts, they are found too similar, the transcript with the greatest cumulative -# compatible read (pair-path) support is retained, and the other is discarded. -# -# -# ////////////////////////////////////////////// -# Butterfly Java and parallel execution settings. -# -# --bflyHeapSpaceMax :java max heap space setting for butterfly -# (default: $bflyHeapSpaceMax) => yields command -# 'java -Xmx$bflyHeapSpaceMax -jar Butterfly.jar ... \$bfly_opts' -# --bflyHeapSpaceInit :java initial heap space settings for -# butterfly (default: $bflyHeapSpaceInit) => yields command -# 'java -Xms$bflyHeapSpaceInit -jar Butterfly.jar ... \$bfly_opts' -# --bflyGCThreads :threads for garbage collection -# (default: $bflyGCThreads)) -# --bflyCPU :CPUs to use (default will be normal -# number of CPUs; e.g., $CPU) -# --bflyCalculateCPU :Calculate CPUs based on 80% of max_memory -# divided by maxbflyHeapSpaceMax -# -# --bfly_jar : /path/to/Butterfly.jar, otherwise default -# Trinity-installed version is used. -# -# -################################################################################ -#### Quality Trimming Options #### -# -# --quality_trimming_params defaults to: "$trimmomatic_quality_trim_params" -# -################################################################################ -#### In silico Read Normalization Options ### -# -# --normalize_max_read_cov defaults to $normalize_max_read_cov -# --normalize_by_read_set run normalization separate for each pair of fastq files, -# then one final normalization that combines the individual normalized reads. -# Consider using this if RAM limitations are a consideration. -# -# --just_normalize_reads stop after performing read normalization -# -# --no_normalize_reads :Do *not* run in silico normalization of reads. Defaults to max. read coverage of $normalize_max_read_cov. -# see '--normalize_max_read_cov' under full usage info for tailored settings. -# (Note, as of Sept 21, 2016, normalization is on by default) -# (*Turning off normalization is not recommended for most applications) -# -# --no_parallel_norm_stats :Do not try to run the high-mem normalization stats generator in parallel for paired-end fastqs. -# -############################################################################### -#### Genome-guided de novo assembly -# -# * required: -# -# --genome_guided_max_intron :maximum allowed intron length (also maximum fragment span on genome) -# -# * optional: -# -# --genome_guided_min_coverage :minimum read coverage for identifying and expressed region of the genome. (default: 1) -# -# --genome_guided_min_reads_per_partition :default min of 10 reads per partition -# -# -####################################################################### -# Trinity phase 2 (parallel assembly of read clusters) Options: ####### -# -# --grid_exec :your command-line utility for submitting jobs to the grid. -# This should be a command line tool that accepts a single parameter: -# \${your_submission_tool} /path/to/file/containing/commands.txt -# and this submission tool should exit(0) upon successful -# completion of all commands. -# -# --grid_node_CPU number of threads for each parallel process to leverage. (default: $grid_node_CPU) -# -# --grid_node_max_memory max memory targeted for each grid node. (default: $grid_node_max_memory) -# -# The --grid_node_CPU and --grid_node_max_memory are applied as -# the --CPU and --max_memory parameters for the Trinity jobs run in -# Trinity Phase 2 (assembly of read clusters) -# -# --FORCE ignore failed commands from earlier run, continue on. -# (Note, this should only be used after you've -# already dealt with these failed commands directly as needed) -# -######################################################################## -# Singularity-related options -# -# --singularity_img :path to a Trinity singularity image to use -# -# --singularity_extra_params :additional parameters to include for the singularity command execution -# -# - - ^; - -my $usage_synopsis = qq^# -# -############################################################################### -# -# *Note, a typical Trinity command might be: -# -# Trinity --seqType fq --max_memory 50G --left reads_1.fq --right reads_2.fq --CPU 6 -# -# (if you have multiple samples, use --samples_file ... see above for details) -# -# and for Genome-guided Trinity, provide a coordinate-sorted bam: -# -# Trinity --genome_guided_bam rnaseq_alignments.csorted.bam --max_memory 50G\ -# --genome_guided_max_intron 10000 --CPU 6 -# -# see: $FindBin::RealBin/sample_data/test_Trinity_Assembly/ -# for sample data and 'runMe.sh' for example Trinity execution -# -# For more details, visit: http://trinityrnaseq.github.io -# -############################################################################### - - - ^; - - - -my $advanced_usage = <<_ADVANCEDUSAGE_; -################################################################################### - ## Not intended for users, instead for experimentation by developers ## -################################################################################### -# -# -# Inchworm-related options: -# -# --INCHWORM_CUSTOM_PARAMS :additional parameters to be passed on to Inchworm -# --FORCE_INCHWORM_KMER_METHOD :uses inchworm built-in kmer cataloger instead of jellyfish (not recommended) -# --NO_PARALLEL_IWORM : turn off parallel iworm assembly -# --iworm_opts : options for inchworm -# -# --iworm_cdhit : perform iworm contig database reduction using cdhit -# --__KMER_SIZE : default $KMER_SIZE (do not change unless for experimental usage) -# -# -# Chyrsalis-related options: -# -# --min_pcnt_read_iworm_kmers :min percentage of a read sequence that must be composed of inchworm kmers to be pursued -# by chrysalis (default: $min_percent_read_iworm_kmers) note: off if < 0 -# -# --min_iso_ratio :min fraction of average kmer coverage between two iworm contigs -# required for gluing. (default: $min_iso_ratio) -# --glue_factor :fraction of max (iworm pair coverage) for read glue support (default: $glue_factor) -# -# --max_reads_per_loop :maximum number of reads to read into -# memory at once (default: $max_reads_per_loop) -# --min_pct_read_mapping :minimum percent of a reads kmers that must map to an -# inchworm bundle (aka. component) default: $min_pct_read_mapping -# -# --bowtie_components :use bowtie2 to generate readsToTranscripts mappings -# -# -# Other: -# -# --bypass_java_version_check : skip check for required java version 1.$JAVA_VERSION_REQUIRED -# -# --java_opts : can include any additional custom options to the java command. -# ie. -Djava.io.tmpdir=/path/to/my/custom/tmpdir -# --no_salmon : exclude salmon expression filtering -# --min_eff_read_cov : minimum effective read coverage for reconstructed transcript (default: $min_eff_read_cov) -# -# --long_reads_mode : run in long reads mode (requires --single and the long reads integrated with LR$| accession prefixes. -# -# --no_check_coordsorted_bam : in genome-guided mode, won't test the bam file for coordinate-sortedness# -# -# --stomp_snps : stomp snps out of kmers before inchworm assembly -# -# --NO_SEQTK :disable seqtk for fq->fa conversions, instead use slower perl code -# - -_ADVANCEDUSAGE_ - - ; \ No newline at end of file diff --git a/results/2022-1201/files_features/Ivanov-et-al/called_yeast_genes.bed b/results/2022-1201/files_features/Ivanov-et-al/called_yeast_genes.bed deleted file mode 100644 index 771f47e..0000000 --- a/results/2022-1201/files_features/Ivanov-et-al/called_yeast_genes.bed +++ /dev/null @@ -1,9535 +0,0 @@ -chrI 6546 7207 HC_gene_0001 1 + 6546 7207 -chrI 8387 9052 MC_gene_0002 1 + 8387 9052 -chrI 9332 9915 MC_gene_0003 2 + 9332 9915 -chrI 11327 15815 MC_gene_0004 2 + 11327 15815 -chrI 15659 16299 MC_gene_0005 1 + 15659 16299 -chrI 16973 18276 MC_gene_0006 1 + 16973 18276 -chrI 19905 22110 LC_gene_0007 1 + 19905 22110 -chrI 22779 23792 MC_gene_0008 1 + 22779 23792 -chrI 23994 24555 LC_gene_0009 1 + 23994 24555 -chrI 24836 28122 HC_gene_0010 1 + 24836 28122 -chrI 30116 31150 MC_gene_0011 1 + 30116 31150 -chrI 31222 31589 HC_gene_0012 35 + 31222 31589 -chrI 31240 33027 HC_gene_0013 10 + 31240 33027 -chrI 33357 34844 HC_gene_0014 33 + 33357 34844 -chrI 35105 36390 HC_gene_0015 161 + 35105 36390 -chrI 36523 37367 HC_gene_0016 148 + 36523 37367 -chrI 37413 39107 HC_gene_0017 25 + 37413 39107 -chrI 39203 42020 HC_gene_0018 29 + 39203 42020 -chrI 42153 42821 HC_gene_0019 90 + 42153 42821 -chrI 43467 45587 HC_gene_0020 5 + 43467 45587 -chrI 45809 48316 HC_gene_0021 74 + 45809 48316 -chrI 48549 51859 HC_gene_0022 10 + 48549 51859 -chrI 52867 53307 LC_gene_0023 1 + 52867 53307 -chrI 54315 55065 MC_gene_0024 1 + 54315 55065 -chrI 57504 57963 HC_gene_0025 135 + 57504 57963 -chrI 57982 58702 LC_gene_0026 1 + 57982 58702 -chrI 61298 62657 HC_gene_0027 220 + 61298 62657 -chrI 62775 65479 HC_gene_0028 11 + 62775 65479 -chrI 68701 69826 MC_gene_0029 1 + 68701 69826 -chrI 70029 70580 HC_gene_0030 1 + 70029 70580 -chrI 71706 73454 HC_gene_0031 9018 + 71706 73454 -chrI 73919 74911 HC_gene_0032 4 + 73919 74911 -chrI 76399 79562 HC_gene_0033 290 + 76399 79562 -chrI 79687 80745 HC_gene_0034 1 + 79687 80745 -chrI 82259 82589 MC_gene_0035 1 + 82259 82589 -chrI 82699 83304 HC_gene_0036 113 + 82699 83304 -chrI 84251 85460 LC_gene_0037 1 + 84251 85460 -chrI 87262 87857 HC_gene_0038 146 + 87262 87857 -chrI 92857 94530 HC_gene_0039 21 + 92857 94530 -chrI 94605 95579 HC_gene_0040 42 + 94605 95579 -chrI 99456 100121 LC_gene_0041 1 + 99456 100121 -chrI 110201 111050 MC_gene_0042 1 + 110201 111050 -chrI 114807 118397 HC_gene_0043 6 + 114807 118397 -chrI 119076 119703 LC_gene_0044 1 + 119076 119703 -chrI 119856 124497 HC_gene_0045 5 + 119856 124497 -chrI 124780 126870 HC_gene_0046 66 + 124780 126870 -chrI 127385 128190 LC_gene_0047 1 + 127385 128190 -chrI 129236 130589 HC_gene_0048 73 + 129236 130589 -chrI 130733 132084 HC_gene_0049 903 + 130733 132084 -chrI 132194 134174 HC_gene_0050 4 + 132194 134174 -chrI 135827 136760 HC_gene_0051 62 + 135827 136760 -chrI 136872 137645 HC_gene_0052 181 + 136872 137645 -chrI 139450 141609 LC_gene_0053 1 + 139450 141609 -chrI 141947 143383 HC_gene_0054 3501 + 141947 143383 -chrI 143616 147588 HC_gene_0055 3 + 143616 147588 -chrI 151807 152195 MC_gene_0056 1 + 151807 152195 -chrI 152214 154067 HC_gene_0057 42 + 152214 154067 -chrI 154956 156864 HC_gene_0058 38 + 154956 156864 -chrI 158862 159919 HC_gene_0059 56 + 158862 159919 -chrI 160161 160792 LC_gene_0060 1 + 160161 160792 -chrI 165190 166168 MC_gene_0061 1 + 165190 166168 -chrI 169323 170416 HC_gene_0062 490 + 169323 170416 -chrI 170954 172274 MC_gene_0063 1 + 170954 172274 -chrI 175310 176564 HC_gene_0064 10 + 175310 176564 -chrI 177622 179482 LC_gene_0065 1 + 177622 179482 -chrI 180249 180790 HC_gene_0066 3 + 180249 180790 -chrI 181162 181379 MC_gene_0067 1 + 181162 181379 -chrI 181477 182129 LC_gene_0068 1 + 181477 182129 -chrI 188053 188908 MC_gene_0069 1 + 188053 188908 -chrI 1678 3954 LC_gene_0070 1 - 1678 3954 -chrI 4977 6332 HC_gene_0071 1 - 4977 6332 -chrI 7005 9198 MC_gene_0072 1 - 7005 9198 -chrI 9875 10533 LC_gene_0073 1 - 9875 10533 -chrI 10662 11059 LC_gene_0074 1 - 10662 11059 -chrI 11413 14344 LC_gene_0075 1 - 11413 14344 -chrI 16781 18908 MC_gene_0076 1 - 16781 18908 -chrI 22394 23620 MC_gene_0077 1 - 22394 23620 -chrI 23908 24727 HC_gene_0078 1 - 23908 24727 -chrI 28031 29777 HC_gene_0079 1 - 28031 29777 -chrI 30210 30782 MC_gene_0080 1 - 30210 30782 -chrI 31056 31600 HC_gene_0081 19 - 31056 31600 -chrI 32917 34373 HC_gene_0082 4 - 32917 34373 -chrI 35756 36326 LC_gene_0083 1 - 35756 36326 -chrI 37214 38981 LC_gene_0084 1 - 37214 38981 -chrI 42102 42703 LC_gene_0085 1 - 42102 42703 -chrI 42715 43600 HC_gene_0086 57 - 42715 43600 -chrI 45052 45673 MC_gene_0087 1 - 45052 45673 -chrI 51771 54791 HC_gene_0088 90 - 51771 54791 -chrI 54931 56887 HC_gene_0089 4 - 54931 56887 -chrI 56908 57384 HC_gene_0090 93 - 56908 57384 -chrI 57728 58477 HC_gene_0091 544 - 57728 58477 -chrI 58617 61059 HC_gene_0092 15 - 58617 61059 -chrI 62581 63194 LC_gene_0093 1 - 62581 63194 -chrI 65380 67845 HC_gene_0094 38 - 65380 67845 -chrI 67940 68541 LC_gene_0095 1 - 67940 68541 -chrI 68640 69582 HC_gene_0096 165 - 68640 69582 -chrI 70220 71510 MC_gene_0097 1 - 70220 71510 -chrI 73615 74807 LC_gene_0098 1 - 73615 74807 -chrI 74844 76184 HC_gene_0099 154 - 74844 76184 -chrI 80565 82563 HC_gene_0100 31 - 80565 82563 -chrI 83209 84495 HC_gene_0101 24 - 83209 84495 -chrI 84585 87079 HC_gene_0102 10 - 84585 87079 -chrI 87688 92523 HC_gene_0103 24 - 87688 92523 -chrI 95480 99784 HC_gene_0104 32 - 95480 99784 -chrI 100038 101169 HC_gene_0105 293 - 100038 101169 -chrI 101367 105967 HC_gene_0106 1 - 101367 105967 -chrI 106140 108624 HC_gene_0107 171 - 106140 108624 -chrI 108833 110447 HC_gene_0108 24 - 108833 110447 -chrI 110612 113403 HC_gene_0109 27 - 110612 113403 -chrI 113533 114620 HC_gene_0110 48 - 113533 114620 -chrI 118425 119576 MC_gene_0111 1 - 118425 119576 -chrI 126752 128103 HC_gene_0112 51 - 126752 128103 -chrI 128078 129087 HC_gene_0113 63 - 128078 129087 -chrI 130698 131133 MC_gene_0114 1 - 130698 131133 -chrI 134073 135703 HC_gene_0115 9 - 134073 135703 -chrI 136813 137249 LC_gene_0116 1 - 136813 137249 -chrI 137520 138417 HC_gene_0117 277 - 137520 138417 -chrI 138667 139023 MC_gene_0118 1 - 138667 139023 -chrI 139330 141494 HC_gene_0119 759 - 139330 141494 -chrI 143622 144079 LC_gene_0120 1 - 143622 144079 -chrI 147512 151204 HC_gene_0121 21 - 147512 151204 -chrI 151602 151934 LC_gene_0122 1 - 151602 151934 -chrI 153983 154741 HC_gene_0123 377 - 153983 154741 -chrI 155608 156721 LC_gene_0124 1 - 155608 156721 -chrI 156678 158662 HC_gene_0125 36 - 156678 158662 -chrI 159795 161341 HC_gene_0126 3 - 159795 161341 -chrI 166562 169021 HC_gene_0127 74 - 166562 169021 -chrI 169127 169971 LC_gene_0128 1 - 169127 169971 -chrI 170180 171711 HC_gene_0129 26 - 170180 171711 -chrI 172123 175136 HC_gene_0130 2 - 172123 175136 -chrI 175740 176218 LC_gene_0131 1 - 175740 176218 -chrI 179219 180052 HC_gene_0132 3 - 179219 180052 -chrI 180098 180825 MC_gene_0133 1 - 180098 180825 -chrI 182378 182597 LC_gene_0134 1 - 182378 182597 -chrII 544 2854 LC_gene_0135 1 + 544 2854 -chrII 3836 5881 MC_gene_0136 1 + 3836 5881 -chrII 8436 9394 LC_gene_0137 1 + 8436 9394 -chrII 9781 10065 LC_gene_0138 1 + 9781 10065 -chrII 10974 13983 MC_gene_0139 1 + 10974 13983 -chrII 23978 24962 HC_gene_0140 185 + 23978 24962 -chrII 28495 29054 MC_gene_0141 1 + 28495 29054 -chrII 28686 29214 MC_gene_0142 1 + 28686 29214 -chrII 29452 29963 MC_gene_0143 2 + 29452 29963 -chrII 30818 35553 LC_gene_0144 1 + 30818 35553 -chrII 36755 38957 HC_gene_0145 530 + 36755 38957 -chrII 39113 40662 HC_gene_0146 36 + 39113 40662 -chrII 40811 44209 HC_gene_0147 28 + 40811 44209 -chrII 45614 46521 HC_gene_0148 5213 + 45614 46521 -chrII 46581 47275 HC_gene_0149 1 + 46581 47275 -chrII 48792 49478 HC_gene_0150 80 + 48792 49478 -chrII 49556 51263 HC_gene_0151 14 + 49556 51263 -chrII 59716 60189 LC_gene_0152 1 + 59716 60189 -chrII 63738 66931 HC_gene_0153 44 + 63738 66931 -chrII 68899 69693 LC_gene_0154 1 + 68899 69693 -chrII 71564 73111 HC_gene_0155 45 + 71564 73111 -chrII 75194 79848 HC_gene_0156 17 + 75194 79848 -chrII 84633 86592 LC_gene_0157 1 + 84633 86592 -chrII 88047 88281 HC_gene_0158 10 + 88047 88281 -chrII 89941 90671 HC_gene_0159 88 + 89941 90671 -chrII 90683 92210 HC_gene_0160 52 + 90683 92210 -chrII 92343 93681 HC_gene_0161 81 + 92343 93681 -chrII 96431 97608 LC_gene_0162 1 + 96431 97608 -chrII 99149 100301 LC_gene_0163 1 + 99149 100301 -chrII 101867 105346 HC_gene_0164 2 + 101867 105346 -chrII 107912 109959 HC_gene_0165 10 + 107912 109959 -chrII 110698 112831 HC_gene_0166 191 + 110698 112831 -chrII 113678 119328 HC_gene_0167 300 + 113678 119328 -chrII 121358 122461 MC_gene_0168 1 + 121358 122461 -chrII 125046 126182 HC_gene_0169 133 + 125046 126182 -chrII 126604 127509 HC_gene_0170 14 + 126604 127509 -chrII 128332 129732 MC_gene_0171 1 + 128332 129732 -chrII 132424 133935 HC_gene_0172 42 + 132424 133935 -chrII 136105 137648 HC_gene_0173 45 + 136105 137648 -chrII 137939 141041 LC_gene_0174 1 + 137939 141041 -chrII 141031 142114 HC_gene_0175 536 + 141031 142114 -chrII 143186 143708 HC_gene_0176 80 + 143186 143708 -chrII 146135 147067 HC_gene_0177 152 + 146135 147067 -chrII 147109 150427 HC_gene_0178 8 + 147109 150427 -chrII 150714 151484 LC_gene_0179 1 + 150714 151484 -chrII 152684 153734 LC_gene_0180 1 + 152684 153734 -chrII 155116 157040 LC_gene_0181 1 + 155116 157040 -chrII 160093 161533 HC_gene_0182 137 + 160093 161533 -chrII 161676 162878 HC_gene_0183 8 + 161676 162878 -chrII 164472 165023 MC_gene_0184 1 + 164472 165023 -chrII 165638 166449 HC_gene_0185 9 + 165638 166449 -chrII 167146 167453 HC_gene_0186 9 + 167146 167453 -chrII 168390 169465 HC_gene_0187 3757 + 168390 169465 -chrII 170347 171166 HC_gene_0188 254 + 170347 171166 -chrII 171416 172436 HC_gene_0189 28 + 171416 172436 -chrII 172509 174876 HC_gene_0190 84 + 172509 174876 -chrII 175877 177630 LC_gene_0191 1 + 175877 177630 -chrII 182317 184216 HC_gene_0192 26 + 182317 184216 -chrII 184319 186027 HC_gene_0193 7 + 184319 186027 -chrII 186830 187469 LC_gene_0194 1 + 186830 187469 -chrII 191977 192393 HC_gene_0195 1 + 191977 192393 -chrII 192421 193648 HC_gene_0196 135 + 192421 193648 -chrII 194043 195871 HC_gene_0197 3 + 194043 195871 -chrII 196328 196711 HC_gene_0198 8 + 196328 196711 -chrII 197949 198657 LC_gene_0199 1 + 197949 198657 -chrII 198901 201339 LC_gene_0200 1 + 198901 201339 -chrII 201988 206072 HC_gene_0201 48 + 201988 206072 -chrII 207158 209352 HC_gene_0202 11 + 207158 209352 -chrII 209574 212202 HC_gene_0203 5 + 209574 212202 -chrII 216727 217355 MC_gene_0204 1 + 216727 217355 -chrII 217406 221035 HC_gene_0205 3 + 217406 221035 -chrII 222909 226968 MC_gene_0206 3 + 222909 226968 -chrII 227527 230694 HC_gene_0207 7 + 227527 230694 -chrII 231511 231940 MC_gene_0208 1 + 231511 231940 -chrII 231623 232828 MC_gene_0209 1 + 231623 232828 -chrII 233030 233507 HC_gene_0210 1 + 233030 233507 -chrII 234244 235293 HC_gene_0211 54 + 234244 235293 -chrII 236069 236400 MC_gene_0212 1 + 236069 236400 -chrII 236467 237082 HC_gene_0213 1892 + 236467 237082 -chrII 238521 238977 HC_gene_0214 18 + 238521 238977 -chrII 239517 241413 LC_gene_0215 1 + 239517 241413 -chrII 241672 242179 MC_gene_0216 1 + 241672 242179 -chrII 242775 244475 HC_gene_0217 43 + 242775 244475 -chrII 245874 246699 HC_gene_0218 102 + 245874 246699 -chrII 246877 248646 HC_gene_0219 56 + 246877 248646 -chrII 249355 250291 MC_gene_0220 1 + 249355 250291 -chrII 251715 252282 HC_gene_0221 13 + 251715 252282 -chrII 254629 255040 MC_gene_0222 1 + 254629 255040 -chrII 255071 255286 LC_gene_0223 1 + 255071 255286 -chrII 256301 257100 HC_gene_0224 2981 + 256301 257100 -chrII 258262 259001 MC_gene_0225 1 + 258262 259001 -chrII 259828 265463 LC_gene_0226 1 + 259828 265463 -chrII 265775 266229 LC_gene_0227 1 + 265775 266229 -chrII 266908 267367 LC_gene_0228 1 + 266908 267367 -chrII 270215 270958 HC_gene_0229 301 + 270215 270958 -chrII 276814 283501 HC_gene_0230 1 + 276814 283501 -chrII 281305 283515 HC_gene_0231 6 + 281305 283515 -chrII 283674 284430 HC_gene_0232 52 + 283674 284430 -chrII 288299 288829 HC_gene_0233 3 + 288299 288829 -chrII 289334 290680 HC_gene_0234 57 + 289334 290680 -chrII 291926 292474 MC_gene_0235 1 + 291926 292474 -chrII 292632 292826 HC_gene_0236 1 + 292632 292826 -chrII 296057 296386 MC_gene_0237 1 + 296057 296386 -chrII 296280 297342 MC_gene_0238 1 + 296280 297342 -chrII 298060 300098 HC_gene_0239 16 + 298060 300098 -chrII 300148 301963 HC_gene_0240 3731 + 300148 301963 -chrII 303878 304795 HC_gene_0241 5 + 303878 304795 -chrII 306270 307420 MC_gene_0242 1 + 306270 307420 -chrII 307595 309021 HC_gene_0243 212 + 307595 309021 -chrII 311845 314976 HC_gene_0244 32 + 311845 314976 -chrII 315537 316692 HC_gene_0245 394 + 315537 316692 -chrII 316815 318065 LC_gene_0246 1 + 316815 318065 -chrII 318211 320414 HC_gene_0247 36 + 318211 320414 -chrII 322195 322965 LC_gene_0248 1 + 322195 322965 -chrII 324766 325611 LC_gene_0249 1 + 324766 325611 -chrII 326315 326806 MC_gene_0250 1 + 326315 326806 -chrII 327529 328363 LC_gene_0251 1 + 327529 328363 -chrII 329678 330338 MC_gene_0252 1 + 329678 330338 -chrII 329756 330418 MC_gene_0253 1 + 329756 330418 -chrII 330461 331485 LC_gene_0254 1 + 330461 331485 -chrII 331778 332462 HC_gene_0255 77 + 331778 332462 -chrII 332672 334236 HC_gene_0256 2190 + 332672 334236 -chrII 334199 335948 LC_gene_0257 1 + 334199 335948 -chrII 336461 336973 LC_gene_0258 1 + 336461 336973 -chrII 337196 337999 MC_gene_0259 1 + 337196 337999 -chrII 338098 338734 LC_gene_0260 1 + 338098 338734 -chrII 339727 340243 MC_gene_0261 1 + 339727 340243 -chrII 340992 342208 HC_gene_0262 1 + 340992 342208 -chrII 342785 344604 HC_gene_0263 224 + 342785 344604 -chrII 347807 349425 HC_gene_0264 104 + 347807 349425 -chrII 350028 350575 HC_gene_0265 10 + 350028 350575 -chrII 351058 352014 HC_gene_0266 87 + 351058 352014 -chrII 353378 353712 MC_gene_0267 1 + 353378 353712 -chrII 356245 356878 MC_gene_0268 1 + 356245 356878 -chrII 360290 360689 MC_gene_0269 1 + 360290 360689 -chrII 362862 364678 HC_gene_0270 20 + 362862 364678 -chrII 364843 365667 LC_gene_0271 1 + 364843 365667 -chrII 365919 366205 HC_gene_0272 4 + 365919 366205 -chrII 366772 366936 MC_gene_0273 1 + 366772 366936 -chrII 370546 370867 HC_gene_0274 21 + 370546 370867 -chrII 371461 373738 HC_gene_0275 4 + 371461 373738 -chrII 374016 375874 LC_gene_0276 1 + 374016 375874 -chrII 376524 378661 HC_gene_0277 5 + 376524 378661 -chrII 380238 381316 HC_gene_0278 60 + 380238 381316 -chrII 381687 382841 HC_gene_0279 93 + 381687 382841 -chrII 383138 386052 HC_gene_0280 17 + 383138 386052 -chrII 386279 389334 HC_gene_0281 38 + 386279 389334 -chrII 390156 391702 LC_gene_0282 1 + 390156 391702 -chrII 391918 392415 MC_gene_0283 2 + 391918 392415 -chrII 392929 395380 HC_gene_0284 3223 + 392929 395380 -chrII 398549 401233 LC_gene_0285 1 + 398549 401233 -chrII 406114 406579 HC_gene_0286 7 + 406114 406579 -chrII 407361 407988 HC_gene_0287 1 + 407361 407988 -chrII 407572 408081 HC_gene_0288 2 + 407572 408081 -chrII 408133 409103 MC_gene_0289 1 + 408133 409103 -chrII 409121 410705 HC_gene_0290 67 + 409121 410705 -chrII 411038 414207 HC_gene_0291 128 + 411038 414207 -chrII 415885 417082 HC_gene_0292 39 + 415885 417082 -chrII 418373 418692 HC_gene_0293 3 + 418373 418692 -chrII 420119 420418 MC_gene_0294 1 + 420119 420418 -chrII 423490 423701 MC_gene_0295 1 + 423490 423701 -chrII 423752 424885 HC_gene_0296 39 + 423752 424885 -chrII 425080 426124 LC_gene_0297 1 + 425080 426124 -chrII 427132 427728 HC_gene_0298 3 + 427132 427728 -chrII 427845 429595 MC_gene_0299 1 + 427845 429595 -chrII 429564 431689 HC_gene_0300 15 + 429564 431689 -chrII 431968 434404 HC_gene_0301 13 + 431968 434404 -chrII 435938 436792 HC_gene_0302 194 + 435938 436792 -chrII 436918 441388 HC_gene_0303 2 + 436918 441388 -chrII 441515 443771 HC_gene_0304 5 + 441515 443771 -chrII 445036 445344 MC_gene_0305 1 + 445036 445344 -chrII 447590 449365 HC_gene_0306 17 + 447590 449365 -chrII 449605 451126 HC_gene_0307 103 + 449605 451126 -chrII 452620 453583 HC_gene_0308 1178 + 452620 453583 -chrII 453600 454771 HC_gene_0309 16 + 453600 454771 -chrII 454780 457886 HC_gene_0310 2 + 454780 457886 -chrII 458690 460323 HC_gene_0311 50 + 458690 460323 -chrII 460761 461153 MC_gene_0312 1 + 460761 461153 -chrII 462100 462747 HC_gene_0313 166 + 462100 462747 -chrII 467158 469791 HC_gene_0314 27 + 467158 469791 -chrII 474354 476554 MC_gene_0315 1 + 474354 476554 -chrII 475263 477008 MC_gene_0316 1 + 475263 477008 -chrII 476870 477191 MC_gene_0317 1 + 476870 477191 -chrII 477647 479209 HC_gene_0318 5619 + 477647 479209 -chrII 479299 480473 HC_gene_0319 23 + 479299 480473 -chrII 483801 484093 MC_gene_0320 2 + 483801 484093 -chrII 484148 484866 LC_gene_0321 1 + 484148 484866 -chrII 485939 486959 LC_gene_0322 1 + 485939 486959 -chrII 488671 489029 HC_gene_0323 8 + 488671 489029 -chrII 490825 491273 HC_gene_0324 356 + 490825 491273 -chrII 493057 493385 HC_gene_0325 2 + 493057 493385 -chrII 495578 496308 MC_gene_0326 1 + 495578 496308 -chrII 497131 499365 HC_gene_0327 11 + 497131 499365 -chrII 501383 501983 LC_gene_0328 1 + 501383 501983 -chrII 504776 505584 HC_gene_0329 89 + 504776 505584 -chrII 505621 512974 HC_gene_0330 1 + 505621 512974 -chrII 512980 513739 HC_gene_0331 125 + 512980 513739 -chrII 515654 517504 HC_gene_0332 70 + 515654 517504 -chrII 527182 527743 HC_gene_0333 9 + 527182 527743 -chrII 528269 530759 HC_gene_0334 36 + 528269 530759 -chrII 532503 533321 HC_gene_0335 2 + 532503 533321 -chrII 533704 534927 HC_gene_0336 225 + 533704 534927 -chrII 535186 536490 HC_gene_0337 159 + 535186 536490 -chrII 536548 539792 HC_gene_0338 27 + 536548 539792 -chrII 540005 541206 HC_gene_0339 172 + 540005 541206 -chrII 541435 542326 MC_gene_0340 1 + 541435 542326 -chrII 544880 546184 HC_gene_0341 144 + 544880 546184 -chrII 546332 548411 HC_gene_0342 75 + 546332 548411 -chrII 549693 551020 HC_gene_0343 121 + 549693 551020 -chrII 553533 554448 MC_gene_0344 1 + 553533 554448 -chrII 555261 558348 HC_gene_0345 196 + 555261 558348 -chrII 558642 559816 HC_gene_0346 201 + 558642 559816 -chrII 560000 561070 HC_gene_0347 62 + 560000 561070 -chrII 561414 563016 MC_gene_0348 1 + 561414 563016 -chrII 564852 565527 HC_gene_0349 873 + 564852 565527 -chrII 565620 567680 HC_gene_0350 19 + 565620 567680 -chrII 568763 569839 HC_gene_0351 54 + 568763 569839 -chrII 569979 570533 LC_gene_0352 1 + 569979 570533 -chrII 571408 571761 MC_gene_0353 1 + 571408 571761 -chrII 572053 573774 HC_gene_0354 15 + 572053 573774 -chrII 574375 574761 LC_gene_0355 1 + 574375 574761 -chrII 576367 576779 MC_gene_0356 1 + 576367 576779 -chrII 578336 579178 HC_gene_0357 253 + 578336 579178 -chrII 581754 582318 MC_gene_0358 1 + 581754 582318 -chrII 582367 583465 HC_gene_0359 32 + 582367 583465 -chrII 583600 584925 HC_gene_0360 31 + 583600 584925 -chrII 591499 591706 MC_gene_0361 1 + 591499 591706 -chrII 594111 595065 LC_gene_0362 1 + 594111 595065 -chrII 595067 596054 MC_gene_0363 1 + 595067 596054 -chrII 596058 597141 HC_gene_0364 53 + 596058 597141 -chrII 597344 599078 HC_gene_0365 4 + 597344 599078 -chrII 600750 602524 LC_gene_0366 1 + 600750 602524 -chrII 602503 603666 HC_gene_0367 232 + 602503 603666 -chrII 604483 605579 HC_gene_0368 2929 + 604483 605579 -chrII 606246 607283 HC_gene_0369 2805 + 606246 607283 -chrII 607487 609044 HC_gene_0370 61 + 607487 609044 -chrII 609895 611992 HC_gene_0371 50 + 609895 611992 -chrII 614446 615225 HC_gene_0372 21 + 614446 615225 -chrII 615404 617546 MC_gene_0373 3 + 615404 617546 -chrII 618814 620564 HC_gene_0374 144 + 618814 620564 -chrII 620815 622752 HC_gene_0375 27 + 620815 622752 -chrII 623438 624488 HC_gene_0376 57 + 623438 624488 -chrII 624391 625530 LC_gene_0377 1 + 624391 625530 -chrII 625760 628491 HC_gene_0378 15 + 625760 628491 -chrII 628987 632169 HC_gene_0379 14 + 628987 632169 -chrII 633573 634991 HC_gene_0380 100 + 633573 634991 -chrII 635092 636656 HC_gene_0381 66 + 635092 636656 -chrII 640156 642353 LC_gene_0382 1 + 640156 642353 -chrII 644129 644493 MC_gene_0383 1 + 644129 644493 -chrII 645326 646224 HC_gene_0384 109 + 645326 646224 -chrII 647478 650113 HC_gene_0385 45 + 647478 650113 -chrII 650296 651390 HC_gene_0386 10 + 650296 651390 -chrII 651334 653192 HC_gene_0387 64 + 651334 653192 -chrII 653313 655437 HC_gene_0388 8 + 653313 655437 -chrII 657783 658721 HC_gene_0389 47 + 657783 658721 -chrII 664973 665476 LC_gene_0390 1 + 664973 665476 -chrII 666101 666683 LC_gene_0391 1 + 666101 666683 -chrII 668101 668483 LC_gene_0392 1 + 668101 668483 -chrII 670490 673594 HC_gene_0393 3 + 670490 673594 -chrII 675312 676391 HC_gene_0394 60 + 675312 676391 -chrII 677646 679441 LC_gene_0395 1 + 677646 679441 -chrII 680300 680707 HC_gene_0396 86 + 680300 680707 -chrII 680680 681951 LC_gene_0397 1 + 680680 681951 -chrII 682220 682525 LC_gene_0398 1 + 682220 682525 -chrII 683355 684802 HC_gene_0399 29 + 683355 684802 -chrII 684946 685462 HC_gene_0400 175 + 684946 685462 -chrII 686818 690350 HC_gene_0401 5 + 686818 690350 -chrII 691923 694588 HC_gene_0402 11 + 691923 694588 -chrII 697841 698748 HC_gene_0403 19 + 697841 698748 -chrII 699213 700095 LC_gene_0404 1 + 699213 700095 -chrII 700173 700384 MC_gene_0405 1 + 700173 700384 -chrII 703508 704389 MC_gene_0406 1 + 703508 704389 -chrII 704509 706894 HC_gene_0407 80 + 704509 706894 -chrII 707320 708205 HC_gene_0408 307 + 707320 708205 -chrII 711554 712845 HC_gene_0409 64 + 711554 712845 -chrII 715014 716546 MC_gene_0410 1 + 715014 716546 -chrII 718403 719389 HC_gene_0411 2 + 718403 719389 -chrII 721329 722396 HC_gene_0412 49 + 721329 722396 -chrII 722591 723118 HC_gene_0413 223 + 722591 723118 -chrII 723207 723728 HC_gene_0414 114 + 723207 723728 -chrII 724421 727048 HC_gene_0415 39 + 724421 727048 -chrII 727352 727902 LC_gene_0416 1 + 727352 727902 -chrII 728352 729778 HC_gene_0417 2 + 728352 729778 -chrII 728852 729987 HC_gene_0418 32 + 728852 729987 -chrII 730339 732635 HC_gene_0419 5 + 730339 732635 -chrII 734773 735677 LC_gene_0420 1 + 734773 735677 -chrII 736222 737803 HC_gene_0421 217 + 736222 737803 -chrII 738544 739688 HC_gene_0422 109 + 738544 739688 -chrII 739827 741145 HC_gene_0423 87 + 739827 741145 -chrII 741267 741721 HC_gene_0424 251 + 741267 741721 -chrII 741830 742169 MC_gene_0425 1 + 741830 742169 -chrII 744825 746217 HC_gene_0426 34 + 744825 746217 -chrII 747108 748010 LC_gene_0427 1 + 747108 748010 -chrII 749542 751335 HC_gene_0428 10 + 749542 751335 -chrII 752882 754219 LC_gene_0429 1 + 752882 754219 -chrII 760267 761103 HC_gene_0430 47 + 760267 761103 -chrII 761227 762714 HC_gene_0431 163 + 761227 762714 -chrII 762879 764535 LC_gene_0432 1 + 762879 764535 -chrII 767416 768182 LC_gene_0433 1 + 767416 768182 -chrII 768191 768791 HC_gene_0434 123 + 768191 768791 -chrII 768955 769921 MC_gene_0435 1 + 768955 769921 -chrII 770867 771782 MC_gene_0436 1 + 770867 771782 -chrII 773327 773808 MC_gene_0437 1 + 773327 773808 -chrII 773844 774621 MC_gene_0438 3 + 773844 774621 -chrII 774681 776381 HC_gene_0439 550 + 774681 776381 -chrII 776536 778177 HC_gene_0440 117 + 776536 778177 -chrII 778497 779305 MC_gene_0441 1 + 778497 779305 -chrII 779628 782442 HC_gene_0442 11 + 779628 782442 -chrII 782582 783686 HC_gene_0443 97 + 782582 783686 -chrII 783810 784710 MC_gene_0444 1 + 783810 784710 -chrII 785427 786666 HC_gene_0445 29 + 785427 786666 -chrII 787091 788792 HC_gene_0446 32 + 787091 788792 -chrII 791474 791888 MC_gene_0447 1 + 791474 791888 -chrII 792435 796655 HC_gene_0448 2 + 792435 796655 -chrII 796701 798929 MC_gene_0449 1 + 796701 798929 -chrII 799235 799595 MC_gene_0450 2 + 799235 799595 -chrII 800471 802166 HC_gene_0451 33 + 800471 802166 -chrII 805328 807241 MC_gene_0452 1 + 805328 807241 -chrII 807217 808376 HC_gene_0453 17 + 807217 808376 -chrII 808582 809537 LC_gene_0454 1 + 808582 809537 -chrII 809993 811865 LC_gene_0455 1 + 809993 811865 -chrII 198 3894 MC_gene_0456 1 - 198 3894 -chrII 9831 10552 HC_gene_0457 126 - 9831 10552 -chrII 10770 11318 HC_gene_0458 2 - 10770 11318 -chrII 14101 17966 HC_gene_0459 19 - 14101 17966 -chrII 18073 21314 HC_gene_0460 6 - 18073 21314 -chrII 21567 23782 HC_gene_0461 30 - 21567 23782 -chrII 24803 28607 HC_gene_0462 11 - 24803 28607 -chrII 28977 29731 MC_gene_0463 1 - 28977 29731 -chrII 29781 30931 LC_gene_0464 1 - 29781 30931 -chrII 35393 36234 MC_gene_0465 1 - 35393 36234 -chrII 36546 36793 LC_gene_0466 1 - 36546 36793 -chrII 44104 44969 HC_gene_0467 180 - 44104 44969 -chrII 46217 47194 MC_gene_0468 1 - 46217 47194 -chrII 47268 49039 HC_gene_0469 226 - 47268 49039 -chrII 49139 49397 MC_gene_0470 1 - 49139 49397 -chrII 50929 51605 HC_gene_0471 14 - 50929 51605 -chrII 52207 54030 MC_gene_0472 1 - 52207 54030 -chrII 54039 55526 MC_gene_0473 2 - 54039 55526 -chrII 54202 59549 MC_gene_0474 3 - 54202 59549 -chrII 59709 60778 HC_gene_0475 1035 - 59709 60778 -chrII 61152 62718 HC_gene_0476 33 - 61152 62718 -chrII 66975 69567 HC_gene_0477 9 - 66975 69567 -chrII 69656 71159 HC_gene_0478 28 - 69656 71159 -chrII 71498 71990 LC_gene_0479 1 - 71498 71990 -chrII 72961 74712 HC_gene_0480 3 - 72961 74712 -chrII 79880 80755 HC_gene_0481 74 - 79880 80755 -chrII 80944 84291 HC_gene_0482 617 - 80944 84291 -chrII 84414 86473 HC_gene_0483 1 - 84414 86473 -chrII 87121 87801 HC_gene_0484 1 - 87121 87801 -chrII 88401 89465 HC_gene_0485 2933 - 88401 89465 -chrII 89803 90466 LC_gene_0486 1 - 89803 90466 -chrII 90584 91436 LC_gene_0487 1 - 90584 91436 -chrII 93519 96113 HC_gene_0488 38 - 93519 96113 -chrII 96328 99445 HC_gene_0489 1 - 96328 99445 -chrII 100297 101189 HC_gene_0490 199 - 100297 101189 -chrII 104000 104677 MC_gene_0491 1 - 104000 104677 -chrII 105228 107507 HC_gene_0492 47 - 105228 107507 -chrII 108802 109981 MC_gene_0493 1 - 108802 109981 -chrII 109934 111206 HC_gene_0494 53 - 109934 111206 -chrII 112733 113440 HC_gene_0495 136 - 112733 113440 -chrII 115314 117199 HC_gene_0496 55 - 115314 117199 -chrII 119282 122103 HC_gene_0497 44 - 119282 122103 -chrII 122304 124823 HC_gene_0498 117 - 122304 124823 -chrII 126092 127562 HC_gene_0499 7 - 126092 127562 -chrII 127677 132197 HC_gene_0500 131 - 127677 132197 -chrII 133843 135703 HC_gene_0501 122 - 133843 135703 -chrII 136586 137554 MC_gene_0502 1 - 136586 137554 -chrII 138075 140317 HC_gene_0503 28 - 138075 140317 -chrII 142000 143112 HC_gene_0504 174 - 142000 143112 -chrII 143588 145783 HC_gene_0505 223 - 143588 145783 -chrII 146769 146979 MC_gene_0506 1 - 146769 146979 -chrII 150221 151237 HC_gene_0507 284 - 150221 151237 -chrII 151407 153689 HC_gene_0508 8 - 151407 153689 -chrII 153657 158452 HC_gene_0509 1 - 153657 158452 -chrII 158487 159722 HC_gene_0510 97 - 158487 159722 -chrII 160451 161456 LC_gene_0511 1 - 160451 161456 -chrII 162763 164116 HC_gene_0512 1032 - 162763 164116 -chrII 164384 164827 HC_gene_0513 43 - 164384 164827 -chrII 164933 166956 HC_gene_0514 5 - 164933 166956 -chrII 167055 167878 HC_gene_0515 357 - 167055 167878 -chrII 169354 169951 HC_gene_0516 93 - 169354 169951 -chrII 170156 170430 HC_gene_0517 1 - 170156 170430 -chrII 171041 171282 MC_gene_0518 1 - 171041 171282 -chrII 171408 172221 LC_gene_0519 1 - 171408 172221 -chrII 174749 177580 HC_gene_0520 17 - 174749 177580 -chrII 177795 181395 HC_gene_0521 51 - 177795 181395 -chrII 181486 182136 HC_gene_0522 73 - 181486 182136 -chrII 184083 185143 LC_gene_0523 1 - 184083 185143 -chrII 185512 186508 HC_gene_0524 75 - 185512 186508 -chrII 186768 190035 HC_gene_0525 24 - 186768 190035 -chrII 190765 191749 HC_gene_0526 1 - 190765 191749 -chrII 192694 193262 LC_gene_0527 1 - 192694 193262 -chrII 193508 195693 LC_gene_0528 1 - 193508 195693 -chrII 196516 197390 LC_gene_0529 1 - 196516 197390 -chrII 197578 198312 HC_gene_0530 1 - 197578 198312 -chrII 198428 198738 HC_gene_0531 3 - 198428 198738 -chrII 198918 201778 HC_gene_0532 11 - 198918 201778 -chrII 201899 202235 MC_gene_0533 1 - 201899 202235 -chrII 205798 206952 HC_gene_0534 17 - 205798 206952 -chrII 208301 209393 LC_gene_0535 1 - 208301 209393 -chrII 211504 212207 LC_gene_0536 1 - 211504 212207 -chrII 212461 216416 HC_gene_0537 75 - 212461 216416 -chrII 216353 217151 HC_gene_0538 163 - 216353 217151 -chrII 218254 219473 MC_gene_0539 1 - 218254 219473 -chrII 219976 221023 HC_gene_0540 3 - 219976 221023 -chrII 235103 235820 HC_gene_0541 2463 - 235103 235820 -chrII 235777 235984 HC_gene_0542 1 - 235777 235984 -chrII 236902 237479 HC_gene_0543 679 - 236902 237479 -chrII 237771 238064 MC_gene_0544 1 - 237771 238064 -chrII 238760 241425 HC_gene_0545 11 - 238760 241425 -chrII 241504 242594 HC_gene_0546 78 - 241504 242594 -chrII 244271 245684 HC_gene_0547 81 - 244271 245684 -chrII 246634 247815 LC_gene_0548 1 - 246634 247815 -chrII 248517 251107 HC_gene_0549 7 - 248517 251107 -chrII 251882 254890 HC_gene_0550 14 - 251882 254890 -chrII 252522 255818 HC_gene_0551 2885 - 252522 255818 -chrII 256997 258006 HC_gene_0552 1706 - 256997 258006 -chrII 258696 266068 MC_gene_0553 3 - 258696 266068 -chrII 266612 267420 HC_gene_0554 95 - 266612 267420 -chrII 267536 269597 HC_gene_0555 114 - 267536 269597 -chrII 270743 272809 HC_gene_0556 28 - 270743 272809 -chrII 272937 273751 HC_gene_0557 2 - 272937 273751 -chrII 274319 275663 MC_gene_0558 2 - 274319 275663 -chrII 276141 276529 HC_gene_0559 20 - 276141 276529 -chrII 280580 280893 MC_gene_0560 1 - 280580 280893 -chrII 283311 283531 HC_gene_0561 2 - 283311 283531 -chrII 284296 288070 HC_gene_0562 15 - 284296 288070 -chrII 288340 289176 MC_gene_0563 1 - 288340 289176 -chrII 290461 291903 HC_gene_0564 1159 - 290461 291903 -chrII 292759 294088 HC_gene_0565 70 - 292759 294088 -chrII 294246 296064 HC_gene_0566 35 - 294246 296064 -chrII 296216 297822 HC_gene_0567 116 - 296216 297822 -chrII 299445 299872 LC_gene_0568 1 - 299445 299872 -chrII 301339 306000 HC_gene_0569 268 - 301339 306000 -chrII 306168 306986 HC_gene_0570 418 - 306168 306986 -chrII 307256 308082 HC_gene_0571 1 - 307256 308082 -chrII 308883 310362 HC_gene_0572 143 - 308883 310362 -chrII 310492 311487 HC_gene_0573 41 - 310492 311487 -chrII 314352 314878 LC_gene_0574 1 - 314352 314878 -chrII 315496 316516 MC_gene_0575 1 - 315496 316516 -chrII 316535 317056 MC_gene_0576 1 - 316535 317056 -chrII 320344 321637 HC_gene_0577 51 - 320344 321637 -chrII 321766 324095 HC_gene_0578 19 - 321766 324095 -chrII 324266 326055 HC_gene_0579 16 - 324266 326055 -chrII 326112 326652 MC_gene_0580 1 - 326112 326652 -chrII 328046 328525 HC_gene_0581 1 - 328046 328525 -chrII 330116 331543 HC_gene_0582 61 - 330116 331543 -chrII 331965 332386 LC_gene_0583 1 - 331965 332386 -chrII 334138 336931 HC_gene_0584 9 - 334138 336931 -chrII 337141 338241 MC_gene_0585 1 - 337141 338241 -chrII 338552 339414 HC_gene_0586 287 - 338552 339414 -chrII 339330 340776 HC_gene_0587 99 - 339330 340776 -chrII 340893 341499 MC_gene_0588 1 - 340893 341499 -chrII 342821 344170 MC_gene_0589 1 - 342821 344170 -chrII 344471 347323 MC_gene_0590 2 - 344471 347323 -chrII 349324 349978 MC_gene_0591 1 - 349324 349978 -chrII 351043 351504 HC_gene_0592 1 - 351043 351504 -chrII 351911 353383 HC_gene_0593 22 - 351911 353383 -chrII 353514 356040 HC_gene_0594 11 - 353514 356040 -chrII 356147 356626 HC_gene_0595 369 - 356147 356626 -chrII 356751 360321 HC_gene_0596 15 - 356751 360321 -chrII 360538 362602 HC_gene_0597 21 - 360538 362602 -chrII 364628 365727 HC_gene_0598 65 - 364628 365727 -chrII 365869 366611 HC_gene_0599 50 - 365869 366611 -chrII 366524 369733 HC_gene_0600 3 - 366524 369733 -chrII 369949 370756 HC_gene_0601 46 - 369949 370756 -chrII 370762 371147 HC_gene_0602 2 - 370762 371147 -chrII 371963 372787 HC_gene_0603 328 - 371963 372787 -chrII 373638 375753 HC_gene_0604 314 - 373638 375753 -chrII 375711 378539 HC_gene_0605 77 - 375711 378539 -chrII 379175 381230 HC_gene_0606 53 - 379175 381230 -chrII 382383 382962 MC_gene_0607 1 - 382383 382962 -chrII 385623 386049 LC_gene_0608 1 - 385623 386049 -chrII 390115 391021 LC_gene_0609 1 - 390115 391021 -chrII 391163 392718 HC_gene_0610 193 - 391163 392718 -chrII 395094 398303 HC_gene_0611 210 - 395094 398303 -chrII 398466 400917 HC_gene_0612 96 - 398466 400917 -chrII 401125 405398 HC_gene_0613 17 - 401125 405398 -chrII 406110 406331 HC_gene_0614 4 - 406110 406331 -chrII 406458 407246 HC_gene_0615 1427 - 406458 407246 -chrII 408077 408530 MC_gene_0616 1 - 408077 408530 -chrII 410601 410946 MC_gene_0617 1 - 410601 410946 -chrII 414061 414765 HC_gene_0618 2832 - 414061 414765 -chrII 414823 415494 HC_gene_0619 8 - 414823 415494 -chrII 417004 418081 HC_gene_0620 1 - 417004 418081 -chrII 418532 419194 HC_gene_0621 444 - 418532 419194 -chrII 420067 422363 HC_gene_0622 187 - 420067 422363 -chrII 422554 423348 HC_gene_0623 1 - 422554 423348 -chrII 424876 425807 HC_gene_0624 224 - 424876 425807 -chrII 426030 426402 HC_gene_0625 134 - 426030 426402 -chrII 426453 426900 HC_gene_0626 7 - 426453 426900 -chrII 427052 427526 HC_gene_0627 100 - 427052 427526 -chrII 427645 429116 HC_gene_0628 383 - 427645 429116 -chrII 429488 431822 HC_gene_0629 17 - 429488 431822 -chrII 434242 435739 HC_gene_0630 46 - 434242 435739 -chrII 439369 441302 LC_gene_0631 1 - 439369 441302 -chrII 442923 444718 HC_gene_0632 142 - 442923 444718 -chrII 444867 447402 HC_gene_0633 14 - 444867 447402 -chrII 449329 450286 LC_gene_0634 1 - 449329 450286 -chrII 450757 452009 HC_gene_0635 329 - 450757 452009 -chrII 453229 454649 HC_gene_0636 19 - 453229 454649 -chrII 456364 457746 LC_gene_0637 1 - 456364 457746 -chrII 457722 458407 HC_gene_0638 802 - 457722 458407 -chrII 460923 461866 HC_gene_0639 369 - 460923 461866 -chrII 462610 466042 HC_gene_0640 128 - 462610 466042 -chrII 469602 474044 HC_gene_0641 63 - 469602 474044 -chrII 474239 475341 LC_gene_0642 1 - 474239 475341 -chrII 476878 477352 MC_gene_0643 1 - 476878 477352 -chrII 480178 480994 HC_gene_0644 62 - 480178 480994 -chrII 481222 483435 HC_gene_0645 787 - 481222 483435 -chrII 483802 484544 HC_gene_0646 132 - 483802 484544 -chrII 484682 486755 HC_gene_0647 9 - 484682 486755 -chrII 486944 488569 HC_gene_0648 39 - 486944 488569 -chrII 488772 491064 HC_gene_0649 255 - 488772 491064 -chrII 491067 492872 HC_gene_0650 1072 - 491067 492872 -chrII 492973 494193 HC_gene_0651 11 - 492973 494193 -chrII 494218 495375 HC_gene_0652 59 - 494218 495375 -chrII 495487 496899 HC_gene_0653 48 - 495487 496899 -chrII 499346 501595 HC_gene_0654 14 - 499346 501595 -chrII 501480 504408 HC_gene_0655 15 - 501480 504408 -chrII 510515 511521 MC_gene_0656 1 - 510515 511521 -chrII 511739 512267 LC_gene_0657 1 - 511739 512267 -chrII 513610 515367 HC_gene_0658 7 - 513610 515367 -chrII 517198 521357 HC_gene_0659 2 - 517198 521357 -chrII 521613 526713 MC_gene_0660 3 - 521613 526713 -chrII 526865 528060 HC_gene_0661 32 - 526865 528060 -chrII 530370 532205 HC_gene_0662 788 - 530370 532205 -chrII 532432 533008 MC_gene_0663 1 - 532432 533008 -chrII 533683 534979 HC_gene_0664 3 - 533683 534979 -chrII 535062 536214 LC_gene_0665 1 - 535062 536214 -chrII 538965 539319 MC_gene_0666 1 - 538965 539319 -chrII 539011 539441 MC_gene_0667 1 - 539011 539441 -chrII 539693 541107 MC_gene_0668 2 - 539693 541107 -chrII 541131 544749 HC_gene_0669 7 - 541131 544749 -chrII 546001 546583 MC_gene_0670 1 - 546001 546583 -chrII 547054 547714 LC_gene_0671 1 - 547054 547714 -chrII 548261 549101 HC_gene_0672 433 - 548261 549101 -chrII 549215 549586 HC_gene_0673 9 - 549215 549586 -chrII 550925 553238 HC_gene_0674 4 - 550925 553238 -chrII 553430 553915 HC_gene_0675 7 - 553430 553915 -chrII 554340 555674 HC_gene_0676 7 - 554340 555674 -chrII 556300 556990 LC_gene_0677 1 - 556300 556990 -chrII 557968 558289 MC_gene_0678 1 - 557968 558289 -chrII 558355 559120 LC_gene_0679 1 - 558355 559120 -chrII 559736 560013 MC_gene_0680 1 - 559736 560013 -chrII 560733 560995 MC_gene_0681 1 - 560733 560995 -chrII 561503 562456 LC_gene_0682 1 - 561503 562456 -chrII 562746 564846 HC_gene_0683 1452 - 562746 564846 -chrII 567441 568536 HC_gene_0684 342 - 567441 568536 -chrII 568796 569664 LC_gene_0685 1 - 568796 569664 -chrII 569793 571244 HC_gene_0686 75 - 569793 571244 -chrII 571346 572299 HC_gene_0687 74 - 571346 572299 -chrII 573714 576012 HC_gene_0688 31 - 573714 576012 -chrII 576192 578137 HC_gene_0689 17 - 576192 578137 -chrII 579009 581468 HC_gene_0690 77 - 579009 581468 -chrII 581580 582195 HC_gene_0691 383 - 581580 582195 -chrII 582174 583377 LC_gene_0692 1 - 582174 583377 -chrII 584668 586195 HC_gene_0693 73 - 584668 586195 -chrII 586457 589174 HC_gene_0694 10 - 586457 589174 -chrII 590076 591388 MC_gene_0695 1 - 590076 591388 -chrII 591607 592800 HC_gene_0696 651 - 591607 592800 -chrII 593108 595598 HC_gene_0697 1 - 593108 595598 -chrII 598937 599979 HC_gene_0698 46 - 598937 599979 -chrII 601191 602220 HC_gene_0699 15 - 601191 602220 -chrII 603409 604183 HC_gene_0700 63 - 603409 604183 -chrII 605502 606083 LC_gene_0701 1 - 605502 606083 -chrII 607252 607848 LC_gene_0702 1 - 607252 607848 -chrII 608434 609795 HC_gene_0703 58 - 608434 609795 -chrII 610486 611925 HC_gene_0704 21 - 610486 611925 -chrII 612052 615877 HC_gene_0705 2360 - 612052 615877 -chrII 616034 618602 HC_gene_0706 26 - 616034 618602 -chrII 622662 623242 HC_gene_0707 2 - 622662 623242 -chrII 624149 624858 HC_gene_0708 83 - 624149 624858 -chrII 624243 625058 HC_gene_0709 9 - 624243 625058 -chrII 628810 629774 HC_gene_0710 2 - 628810 629774 -chrII 630146 631984 LC_gene_0711 1 - 630146 631984 -chrII 632091 633426 HC_gene_0712 17 - 632091 633426 -chrII 634797 635422 LC_gene_0713 1 - 634797 635422 -chrII 636548 641976 MC_gene_0714 3 - 636548 641976 -chrII 642291 642670 HC_gene_0715 81 - 642291 642670 -chrII 643465 645003 MC_gene_0716 1 - 643465 645003 -chrII 646031 647230 HC_gene_0717 32 - 646031 647230 -chrII 650353 651144 MC_gene_0718 2 - 650353 651144 -chrII 651236 652697 MC_gene_0719 1 - 651236 652697 -chrII 653060 654510 MC_gene_0720 1 - 653060 654510 -chrII 654999 655257 MC_gene_0721 1 - 654999 655257 -chrII 655303 657631 HC_gene_0722 11 - 655303 657631 -chrII 658563 662513 HC_gene_0723 83 - 658563 662513 -chrII 662770 664760 HC_gene_0724 21 - 662770 664760 -chrII 664906 666459 HC_gene_0725 597 - 664906 666459 -chrII 666603 668394 HC_gene_0726 83 - 666603 668394 -chrII 668405 670318 HC_gene_0727 10 - 668405 670318 -chrII 673439 675193 HC_gene_0728 50 - 673439 675193 -chrII 675851 679231 HC_gene_0729 22 - 675851 679231 -chrII 679459 680077 HC_gene_0730 33 - 679459 680077 -chrII 680357 681862 HC_gene_0731 12 - 680357 681862 -chrII 682127 683148 HC_gene_0732 46 - 682127 683148 -chrII 685370 686638 HC_gene_0733 321 - 685370 686638 -chrII 689074 691732 HC_gene_0734 67 - 689074 691732 -chrII 694613 697376 HC_gene_0735 55 - 694613 697376 -chrII 698069 700093 HC_gene_0736 12 - 698069 700093 -chrII 700263 702171 HC_gene_0737 8 - 700263 702171 -chrII 702520 704085 HC_gene_0738 11 - 702520 704085 -chrII 704465 706826 HC_gene_0739 67 - 704465 706826 -chrII 708039 711384 HC_gene_0740 28 - 708039 711384 -chrII 712749 714477 HC_gene_0741 66 - 712749 714477 -chrII 714724 716554 HC_gene_0742 132 - 714724 716554 -chrII 716673 718085 HC_gene_0743 1256 - 716673 718085 -chrII 718487 718950 LC_gene_0744 1 - 718487 718950 -chrII 720625 721146 LC_gene_0745 1 - 720625 721146 -chrII 722278 722854 HC_gene_0746 7 - 722278 722854 -chrII 723595 724267 HC_gene_0747 69 - 723595 724267 -chrII 726517 727112 HC_gene_0748 83 - 726517 727112 -chrII 727207 728138 HC_gene_0749 835 - 727207 728138 -chrII 729364 730186 HC_gene_0750 41 - 729364 730186 -chrII 732510 734649 HC_gene_0751 7 - 732510 734649 -chrII 734666 735568 HC_gene_0752 111 - 734666 735568 -chrII 735594 736075 HC_gene_0753 4 - 735594 736075 -chrII 737678 738395 HC_gene_0754 19 - 737678 738395 -chrII 741999 742598 HC_gene_0755 217 - 741999 742598 -chrII 742721 744671 HC_gene_0756 14 - 742721 744671 -chrII 746114 747819 HC_gene_0757 38 - 746114 747819 -chrII 747952 749403 HC_gene_0758 50 - 747952 749403 -chrII 751183 757208 HC_gene_0759 12 - 751183 757208 -chrII 757528 760138 HC_gene_0760 16 - 757528 760138 -chrII 762620 764701 HC_gene_0761 6 - 762620 764701 -chrII 764857 767650 HC_gene_0762 8 - 764857 767650 -chrII 768708 770560 HC_gene_0763 201 - 768708 770560 -chrII 773774 774444 HC_gene_0764 2 - 773774 774444 -chrII 775679 776284 LC_gene_0765 1 - 775679 776284 -chrII 776286 776741 MC_gene_0766 1 - 776286 776741 -chrII 777894 779509 MC_gene_0767 1 - 777894 779509 -chrII 783575 784609 HC_gene_0768 211 - 783575 784609 -chrII 784960 785753 HC_gene_0769 11 - 784960 785753 -chrII 786286 786870 HC_gene_0770 35 - 786286 786870 -chrII 789057 792068 HC_gene_0771 2 - 789057 792068 -chrII 792033 792568 HC_gene_0772 11 - 792033 792568 -chrII 792685 792997 LC_gene_0773 1 - 792685 792997 -chrII 796541 798894 MC_gene_0774 2 - 796541 798894 -chrII 799329 799985 MC_gene_0775 1 - 799329 799985 -chrII 802539 804896 HC_gene_0776 19 - 802539 804896 -chrII 806154 807165 MC_gene_0777 1 - 806154 807165 -chrII 808305 809375 MC_gene_0778 1 - 808305 809375 -chrII 809454 809742 MC_gene_0779 1 - 809454 809742 -chrII 810260 811484 MC_gene_0780 1 - 810260 811484 -chrIII 1406 4281 LC_gene_0781 1 + 1406 4281 -chrIII 17272 18710 HC_gene_0782 36 + 17272 18710 -chrIII 22088 22540 LC_gene_0783 1 + 22088 22540 -chrIII 23560 23988 HC_gene_0784 314 + 23560 23988 -chrIII 24780 27037 HC_gene_0785 173 + 24780 27037 -chrIII 27912 30130 HC_gene_0786 147 + 27912 30130 -chrIII 31430 34156 HC_gene_0787 107 + 31430 34156 -chrIII 35577 37847 HC_gene_0788 32 + 35577 37847 -chrIII 39025 39505 MC_gene_0789 2 + 39025 39505 -chrIII 39666 41066 MC_gene_0790 1 + 39666 41066 -chrIII 41063 41395 HC_gene_0791 7 + 41063 41395 -chrIII 41433 41961 MC_gene_0792 1 + 41433 41961 -chrIII 42134 43650 MC_gene_0793 1 + 42134 43650 -chrIII 44646 46503 LC_gene_0794 1 + 44646 46503 -chrIII 46547 47079 LC_gene_0795 1 + 46547 47079 -chrIII 47444 48302 MC_gene_0796 1 + 47444 48302 -chrIII 48643 50367 HC_gene_0797 1 + 48643 50367 -chrIII 50403 52496 HC_gene_0798 1313 + 50403 52496 -chrIII 52623 54959 HC_gene_0799 32 + 52623 54959 -chrIII 55144 56606 MC_gene_0800 1 + 55144 56606 -chrIII 56885 57352 HC_gene_0801 1 + 56885 57352 -chrIII 59044 60828 HC_gene_0802 67 + 59044 60828 -chrIII 61444 62797 HC_gene_0803 116 + 61444 62797 -chrIII 63409 64678 HC_gene_0804 44 + 63409 64678 -chrIII 68678 69369 LC_gene_0805 1 + 68678 69369 -chrIII 69918 71441 HC_gene_0806 535 + 69918 71441 -chrIII 71776 73421 HC_gene_0807 75 + 71776 73421 -chrIII 74650 75357 MC_gene_0808 1 + 74650 75357 -chrIII 77721 78011 HC_gene_0809 6 + 77721 78011 -chrIII 79098 82392 HC_gene_0810 1 + 79098 82392 -chrIII 82692 83306 MC_gene_0811 2 + 82692 83306 -chrIII 83413 84713 HC_gene_0812 26 + 83413 84713 -chrIII 87198 90727 MC_gene_0813 1 + 87198 90727 -chrIII 91194 91659 MC_gene_0814 1 + 91194 91659 -chrIII 91295 92597 MC_gene_0815 2 + 91295 92597 -chrIII 100883 101447 HC_gene_0816 3 + 100883 101447 -chrIII 101632 102165 MC_gene_0817 1 + 101632 102165 -chrIII 103639 104725 MC_gene_0818 1 + 103639 104725 -chrIII 105798 106195 LC_gene_0819 1 + 105798 106195 -chrIII 106996 107525 HC_gene_0820 520 + 106996 107525 -chrIII 107693 109125 HC_gene_0821 57 + 107693 109125 -chrIII 109025 111869 MC_gene_0822 4 + 109025 111869 -chrIII 111888 112568 HC_gene_0823 247 + 111888 112568 -chrIII 112642 112941 MC_gene_0824 1 + 112642 112941 -chrIII 112815 114276 MC_gene_0825 1 + 112815 114276 -chrIII 114592 115306 MC_gene_0826 2 + 114592 115306 -chrIII 116402 117361 HC_gene_0827 8 + 116402 117361 -chrIII 118596 119259 HC_gene_0828 135 + 118596 119259 -chrIII 120157 120471 MC_gene_0829 1 + 120157 120471 -chrIII 120499 120988 MC_gene_0830 1 + 120499 120988 -chrIII 120785 121454 MC_gene_0831 2 + 120785 121454 -chrIII 121196 121603 MC_gene_0832 1 + 121196 121603 -chrIII 124080 124648 MC_gene_0833 1 + 124080 124648 -chrIII 125213 126018 HC_gene_0834 38 + 125213 126018 -chrIII 126541 126866 HC_gene_0835 4 + 126541 126866 -chrIII 127154 127770 MC_gene_0836 1 + 127154 127770 -chrIII 128047 130545 HC_gene_0837 89 + 128047 130545 -chrIII 131868 132136 MC_gene_0838 1 + 131868 132136 -chrIII 132265 133722 HC_gene_0839 2 + 132265 133722 -chrIII 136390 136939 LC_gene_0840 1 + 136390 136939 -chrIII 137704 139179 HC_gene_0841 3135 + 137704 139179 -chrIII 139395 140190 LC_gene_0842 1 + 139395 140190 -chrIII 143606 144698 HC_gene_0843 173 + 143606 144698 -chrIII 147873 149767 MC_gene_0844 2 + 147873 149767 -chrIII 151995 152436 HC_gene_0845 1 + 151995 152436 -chrIII 152720 154044 HC_gene_0846 27 + 152720 154044 -chrIII 154319 154792 MC_gene_0847 1 + 154319 154792 -chrIII 155287 156068 HC_gene_0848 76 + 155287 156068 -chrIII 156072 157201 MC_gene_0849 1 + 156072 157201 -chrIII 156333 157300 MC_gene_0850 1 + 156333 157300 -chrIII 157720 158377 HC_gene_0851 31 + 157720 158377 -chrIII 158583 159311 HC_gene_0852 3 + 158583 159311 -chrIII 160693 162335 MC_gene_0853 1 + 160693 162335 -chrIII 163296 164041 MC_gene_0854 1 + 163296 164041 -chrIII 166535 166795 MC_gene_0855 1 + 166535 166795 -chrIII 169030 169865 HC_gene_0856 568 + 169030 169865 -chrIII 169979 171801 LC_gene_0857 1 + 169979 171801 -chrIII 171910 172871 MC_gene_0858 1 + 171910 172871 -chrIII 174584 175800 LC_gene_0859 1 + 174584 175800 -chrIII 176778 177094 MC_gene_0860 1 + 176778 177094 -chrIII 177097 177396 HC_gene_0861 2 + 177097 177396 -chrIII 179031 179248 HC_gene_0862 7 + 179031 179248 -chrIII 179392 181079 HC_gene_0863 2 + 179392 181079 -chrIII 181499 186105 MC_gene_0864 2 + 181499 186105 -chrIII 186265 190322 HC_gene_0865 24 + 186265 190322 -chrIII 190564 192063 HC_gene_0866 344 + 190564 192063 -chrIII 193243 194386 HC_gene_0867 148 + 193243 194386 -chrIII 194416 196312 LC_gene_0868 1 + 194416 196312 -chrIII 200420 201183 MC_gene_0869 1 + 200420 201183 -chrIII 202733 205482 MC_gene_0870 3 + 202733 205482 -chrIII 205788 206199 MC_gene_0871 1 + 205788 206199 -chrIII 206860 207961 MC_gene_0872 1 + 206860 207961 -chrIII 208132 209958 HC_gene_0873 3 + 208132 209958 -chrIII 211883 213957 HC_gene_0874 24 + 211883 213957 -chrIII 214060 214875 HC_gene_0875 144 + 214060 214875 -chrIII 214951 216684 HC_gene_0876 11 + 214951 216684 -chrIII 216654 218329 HC_gene_0877 464 + 216654 218329 -chrIII 219277 220460 MC_gene_0878 1 + 219277 220460 -chrIII 223527 224350 HC_gene_0879 9 + 223527 224350 -chrIII 224372 224858 HC_gene_0880 193 + 224372 224858 -chrIII 225536 227816 HC_gene_0881 83 + 225536 227816 -chrIII 228285 229182 HC_gene_0882 5 + 228285 229182 -chrIII 229230 231331 HC_gene_0883 23 + 229230 231331 -chrIII 231448 233151 HC_gene_0884 3 + 231448 233151 -chrIII 237081 240120 HC_gene_0885 142 + 237081 240120 -chrIII 242590 243642 HC_gene_0886 1 + 242590 243642 -chrIII 244493 246361 LC_gene_0887 1 + 244493 246361 -chrIII 246948 248117 HC_gene_0888 90 + 246948 248117 -chrIII 248964 249322 HC_gene_0889 85 + 248964 249322 -chrIII 252842 254291 HC_gene_0890 31 + 252842 254291 -chrIII 258857 259416 HC_gene_0891 312 + 258857 259416 -chrIII 259541 260079 HC_gene_0892 91 + 259541 260079 -chrIII 263340 264018 HC_gene_0893 34 + 263340 264018 -chrIII 265024 266972 HC_gene_0894 175 + 265024 266972 -chrIII 267136 272321 HC_gene_0895 16 + 267136 272321 -chrIII 273102 274307 HC_gene_0896 3 + 273102 274307 -chrIII 274354 277028 HC_gene_0897 3 + 274354 277028 -chrIII 280086 280353 HC_gene_0898 5 + 280086 280353 -chrIII 280430 281766 MC_gene_0899 1 + 280430 281766 -chrIII 281705 282014 MC_gene_0900 1 + 281705 282014 -chrIII 282656 286528 HC_gene_0901 49 + 282656 286528 -chrIII 286697 288213 HC_gene_0902 34 + 286697 288213 -chrIII 289477 291207 HC_gene_0903 13 + 289477 291207 -chrIII 291388 291686 HC_gene_0904 4 + 291388 291686 -chrIII 295488 295889 MC_gene_0905 2 + 295488 295889 -chrIII 298479 299584 LC_gene_0906 1 + 298479 299584 -chrIII 300192 300727 MC_gene_0907 1 + 300192 300727 -chrIII 303212 304207 HC_gene_0908 3 + 303212 304207 -chrIII 305945 308313 LC_gene_0909 1 + 305945 308313 -chrIII 309802 310209 HC_gene_0910 10 + 309802 310209 -chrIII 310381 315268 HC_gene_0911 2 + 310381 315268 -chrIII 1284 1835 LC_gene_0912 1 - 1284 1835 -chrIII 15383 20132 HC_gene_0913 35 - 15383 20132 -chrIII 22315 23405 HC_gene_0914 478 - 22315 23405 -chrIII 23887 24352 HC_gene_0915 771 - 23887 24352 -chrIII 26903 27641 HC_gene_0916 315 - 26903 27641 -chrIII 30782 31198 MC_gene_0917 1 - 30782 31198 -chrIII 34024 35437 HC_gene_0918 74 - 34024 35437 -chrIII 35896 37356 LC_gene_0919 1 - 35896 37356 -chrIII 37726 39448 HC_gene_0920 743 - 37726 39448 -chrIII 39646 40780 HC_gene_0921 133 - 39646 40780 -chrIII 41274 41860 MC_gene_0922 2 - 41274 41860 -chrIII 41844 43221 LC_gene_0923 1 - 41844 43221 -chrIII 43467 44456 HC_gene_0924 125 - 43467 44456 -chrIII 44572 46946 HC_gene_0925 153 - 44572 46946 -chrIII 46934 48395 HC_gene_0926 9 - 46934 48395 -chrIII 48553 50259 HC_gene_0927 1054 - 48553 50259 -chrIII 52378 53943 LC_gene_0928 1 - 52378 53943 -chrIII 54863 56584 HC_gene_0929 58 - 54863 56584 -chrIII 56799 58746 HC_gene_0930 52 - 56799 58746 -chrIII 60712 61238 HC_gene_0931 1375 - 60712 61238 -chrIII 62697 63233 HC_gene_0932 161 - 62697 63233 -chrIII 64559 65602 HC_gene_0933 358 - 64559 65602 -chrIII 65791 68394 HC_gene_0934 735 - 65791 68394 -chrIII 68348 69972 HC_gene_0935 37 - 68348 69972 -chrIII 71372 73065 LC_gene_0936 1 - 71372 73065 -chrIII 73341 74086 HC_gene_0937 70 - 73341 74086 -chrIII 74513 75825 LC_gene_0938 1 - 74513 75825 -chrIII 75922 78283 HC_gene_0939 131 - 75922 78283 -chrIII 81823 82312 LC_gene_0940 1 - 81823 82312 -chrIII 82316 82889 MC_gene_0941 1 - 82316 82889 -chrIII 82671 83514 MC_gene_0942 1 - 82671 83514 -chrIII 84022 85308 MC_gene_0943 1 - 84022 85308 -chrIII 91185 92379 LC_gene_0944 1 - 91185 92379 -chrIII 92381 94365 HC_gene_0945 59 - 92381 94365 -chrIII 94478 95793 HC_gene_0946 13 - 94478 95793 -chrIII 98316 101135 LC_gene_0947 1 - 98316 101135 -chrIII 101159 101823 HC_gene_0948 95 - 101159 101823 -chrIII 102067 104371 HC_gene_0949 373 - 102067 104371 -chrIII 104470 105564 HC_gene_0950 945 - 104470 105564 -chrIII 105533 106845 HC_gene_0951 16 - 105533 106845 -chrIII 107428 108843 MC_gene_0952 1 - 107428 108843 -chrIII 110539 111713 HC_gene_0953 55 - 110539 111713 -chrIII 112511 112896 HC_gene_0954 3 - 112511 112896 -chrIII 113112 114207 HC_gene_0955 4 - 113112 114207 -chrIII 115248 116191 HC_gene_0956 9 - 115248 116191 -chrIII 116752 118404 HC_gene_0957 110 - 116752 118404 -chrIII 118406 118951 MC_gene_0958 1 - 118406 118951 -chrIII 119134 120504 HC_gene_0959 454 - 119134 120504 -chrIII 120841 123450 HC_gene_0960 123 - 120841 123450 -chrIII 124566 124972 HC_gene_0961 4 - 124566 124972 -chrIII 125563 127390 HC_gene_0962 17 - 125563 127390 -chrIII 130058 131907 HC_gene_0963 170 - 130058 131907 -chrIII 132139 133237 MC_gene_0964 1 - 132139 133237 -chrIII 133664 137002 HC_gene_0965 43 - 133664 137002 -chrIII 137560 138988 MC_gene_0966 1 - 137560 138988 -chrIII 139061 140420 MC_gene_0967 1 - 139061 140420 -chrIII 141049 142195 HC_gene_0968 3 - 141049 142195 -chrIII 141135 142546 HC_gene_0969 219 - 141135 142546 -chrIII 143380 143673 MC_gene_0970 1 - 143380 143673 -chrIII 144569 147664 HC_gene_0971 72 - 144569 147664 -chrIII 147722 148593 HC_gene_0972 83 - 147722 148593 -chrIII 149665 152016 MC_gene_0973 1 - 149665 152016 -chrIII 152201 152582 HC_gene_0974 1 - 152201 152582 -chrIII 153933 155115 HC_gene_0975 32 - 153933 155115 -chrIII 154437 155133 HC_gene_0976 98 - 154437 155133 -chrIII 155925 157208 HC_gene_0977 18 - 155925 157208 -chrIII 158294 160428 HC_gene_0978 33 - 158294 160428 -chrIII 160605 162242 HC_gene_0979 8 - 160605 162242 -chrIII 162323 163381 HC_gene_0980 5517 - 162323 163381 -chrIII 163304 166395 HC_gene_0981 31 - 163304 166395 -chrIII 166630 168175 HC_gene_0982 15 - 166630 168175 -chrIII 168720 169271 HC_gene_0983 18 - 168720 169271 -chrIII 169733 172519 HC_gene_0984 23 - 169733 172519 -chrIII 172642 173487 HC_gene_0985 759 - 172642 173487 -chrIII 173652 176524 HC_gene_0986 21 - 173652 176524 -chrIII 176577 176961 HC_gene_0987 58 - 176577 176961 -chrIII 177396 178242 HC_gene_0988 4897 - 177396 178242 -chrIII 178501 178798 HC_gene_0989 24 - 178501 178798 -chrIII 183742 186008 MC_gene_0990 1 - 183742 186008 -chrIII 191013 193037 HC_gene_0991 98 - 191013 193037 -chrIII 194318 197228 HC_gene_0992 22 - 194318 197228 -chrIII 197408 200180 MC_gene_0993 3 - 197408 200180 -chrIII 200979 202043 MC_gene_0994 2 - 200979 202043 -chrIII 202566 205421 HC_gene_0995 2 - 202566 205421 -chrIII 206092 206669 HC_gene_0996 270 - 206092 206669 -chrIII 206697 207961 HC_gene_0997 77 - 206697 207961 -chrIII 208128 208853 LC_gene_0998 1 - 208128 208853 -chrIII 209711 210430 HC_gene_0999 176 - 209711 210430 -chrIII 210514 211635 HC_gene_1000 79 - 210514 211635 -chrIII 211932 213856 LC_gene_1001 1 - 211932 213856 -chrIII 213895 214786 MC_gene_1002 1 - 213895 214786 -chrIII 218173 220118 HC_gene_1003 29 - 218173 220118 -chrIII 220341 223282 HC_gene_1004 46 - 220341 223282 -chrIII 223258 224250 HC_gene_1005 9 - 223258 224250 -chrIII 224735 225200 HC_gene_1006 3 - 224735 225200 -chrIII 227674 228435 LC_gene_1007 1 - 227674 228435 -chrIII 231225 232059 LC_gene_1008 1 - 231225 232059 -chrIII 233051 234699 HC_gene_1009 10 - 233051 234699 -chrIII 235143 236421 HC_gene_1010 2 - 235143 236421 -chrIII 237036 238646 MC_gene_1011 1 - 237036 238646 -chrIII 240030 240593 HC_gene_1012 138 - 240030 240593 -chrIII 240721 242378 HC_gene_1013 54 - 240721 242378 -chrIII 242513 246649 HC_gene_1014 7 - 242513 246649 -chrIII 247886 248811 HC_gene_1015 28 - 247886 248811 -chrIII 249186 250047 HC_gene_1016 78 - 249186 250047 -chrIII 250093 252671 HC_gene_1017 42 - 250093 252671 -chrIII 253222 254200 MC_gene_1018 1 - 253222 254200 -chrIII 258095 258650 MC_gene_1019 1 - 258095 258650 -chrIII 259269 259743 MC_gene_1020 1 - 259269 259743 -chrIII 259969 262666 HC_gene_1021 30 - 259969 262666 -chrIII 263040 263198 HC_gene_1022 1 - 263040 263198 -chrIII 263785 264494 HC_gene_1023 210 - 263785 264494 -chrIII 272240 272878 HC_gene_1024 145 - 272240 272878 -chrIII 273333 274032 LC_gene_1025 1 - 273333 274032 -chrIII 275678 276247 LC_gene_1026 1 - 275678 276247 -chrIII 276582 279857 HC_gene_1027 3 - 276582 279857 -chrIII 287888 289300 HC_gene_1028 28 - 287888 289300 -chrIII 296789 299054 HC_gene_1029 2 - 296789 299054 -chrIII 299920 300508 MC_gene_1030 1 - 299920 300508 -chrIII 300577 302999 HC_gene_1031 7 - 300577 302999 -chrIII 304282 305526 MC_gene_1032 1 - 304282 305526 -chrIII 308687 309966 HC_gene_1033 4 - 308687 309966 -chrIII 310143 310679 LC_gene_1034 1 - 310143 310679 -chrIII 311674 313712 LC_gene_1035 1 - 311674 313712 -chrIV 1793 4995 MC_gene_1036 1 + 1793 4995 -chrIV 7030 8335 LC_gene_1037 1 + 7030 8335 -chrIV 9918 11333 LC_gene_1038 1 + 9918 11333 -chrIV 11745 15155 LC_gene_1039 1 + 11745 15155 -chrIV 16194 17340 LC_gene_1040 1 + 16194 17340 -chrIV 20177 20596 HC_gene_1041 24 + 20177 20596 -chrIV 20551 21803 HC_gene_1042 77 + 20551 21803 -chrIV 21835 22602 MC_gene_1043 1 + 21835 22602 -chrIV 22649 26115 HC_gene_1044 14 + 22649 26115 -chrIV 30637 32127 HC_gene_1045 95 + 30637 32127 -chrIV 32233 33369 HC_gene_1046 242 + 32233 33369 -chrIV 33405 34070 MC_gene_1047 1 + 33405 34070 -chrIV 36779 38342 HC_gene_1048 16 + 36779 38342 -chrIV 38466 38886 HC_gene_1049 336 + 38466 38886 -chrIV 42668 43770 HC_gene_1050 68 + 42668 43770 -chrIV 44033 46010 HC_gene_1051 2395 + 44033 46010 -chrIV 47196 48149 LC_gene_1052 1 + 47196 48149 -chrIV 49876 50930 HC_gene_1053 23 + 49876 50930 -chrIV 52393 54362 HC_gene_1054 58 + 52393 54362 -chrIV 57045 57836 MC_gene_1055 1 + 57045 57836 -chrIV 59131 60580 HC_gene_1056 3 + 59131 60580 -chrIV 61154 63882 MC_gene_1057 2 + 61154 63882 -chrIV 65225 66060 HC_gene_1058 102 + 65225 66060 -chrIV 66027 67656 MC_gene_1059 1 + 66027 67656 -chrIV 69004 70564 LC_gene_1060 1 + 69004 70564 -chrIV 73585 74065 HC_gene_1061 7 + 73585 74065 -chrIV 74407 76724 MC_gene_1062 1 + 74407 76724 -chrIV 74611 77423 MC_gene_1063 1 + 74611 77423 -chrIV 78402 79203 HC_gene_1064 383 + 78402 79203 -chrIV 80696 83389 HC_gene_1065 2 + 80696 83389 -chrIV 85633 86081 HC_gene_1066 4 + 85633 86081 -chrIV 87480 88122 HC_gene_1067 875 + 87480 88122 -chrIV 88208 89945 HC_gene_1068 40 + 88208 89945 -chrIV 90025 92491 HC_gene_1069 4 + 90025 92491 -chrIV 94105 94582 HC_gene_1070 11 + 94105 94582 -chrIV 94597 95966 HC_gene_1071 25 + 94597 95966 -chrIV 98429 99445 HC_gene_1072 75 + 98429 99445 -chrIV 99526 100506 HC_gene_1073 113 + 99526 100506 -chrIV 101661 103563 LC_gene_1074 1 + 101661 103563 -chrIV 103615 104756 HC_gene_1075 1 + 103615 104756 -chrIV 104834 105112 MC_gene_1076 1 + 104834 105112 -chrIV 107077 111173 HC_gene_1077 276 + 107077 111173 -chrIV 111370 114288 HC_gene_1078 4 + 111370 114288 -chrIV 114563 116004 HC_gene_1079 55 + 114563 116004 -chrIV 116276 117409 HC_gene_1080 1772 + 116276 117409 -chrIV 117606 118712 HC_gene_1081 133 + 117606 118712 -chrIV 118146 118717 HC_gene_1082 3671 + 118146 118717 -chrIV 122021 123684 HC_gene_1083 23 + 122021 123684 -chrIV 124876 125715 LC_gene_1084 1 + 124876 125715 -chrIV 126687 130123 HC_gene_1085 564 + 126687 130123 -chrIV 130937 131530 MC_gene_1086 1 + 130937 131530 -chrIV 132141 132662 LC_gene_1087 1 + 132141 132662 -chrIV 133404 134812 HC_gene_1088 908 + 133404 134812 -chrIV 135014 135556 HC_gene_1089 140 + 135014 135556 -chrIV 135716 137697 HC_gene_1090 21 + 135716 137697 -chrIV 138084 139399 HC_gene_1091 41 + 138084 139399 -chrIV 139504 141179 HC_gene_1092 68 + 139504 141179 -chrIV 141955 144334 HC_gene_1093 3 + 141955 144334 -chrIV 145775 147792 MC_gene_1094 1 + 145775 147792 -chrIV 147024 148043 MC_gene_1095 1 + 147024 148043 -chrIV 148146 149205 HC_gene_1096 170 + 148146 149205 -chrIV 149523 149996 LC_gene_1097 1 + 149523 149996 -chrIV 156316 158091 HC_gene_1098 32 + 156316 158091 -chrIV 158697 159295 LC_gene_1099 1 + 158697 159295 -chrIV 159569 160970 HC_gene_1100 154 + 159569 160970 -chrIV 162652 163451 MC_gene_1101 1 + 162652 163451 -chrIV 163456 164172 LC_gene_1102 1 + 163456 164172 -chrIV 164239 164985 HC_gene_1103 77 + 164239 164985 -chrIV 167696 169304 HC_gene_1104 132 + 167696 169304 -chrIV 172433 174174 MC_gene_1105 2 + 172433 174174 -chrIV 173562 174280 MC_gene_1106 1 + 173562 174280 -chrIV 174833 178197 HC_gene_1107 21 + 174833 178197 -chrIV 179999 181226 HC_gene_1108 7 + 179999 181226 -chrIV 183246 184738 HC_gene_1109 70 + 183246 184738 -chrIV 184893 188016 HC_gene_1110 4 + 184893 188016 -chrIV 190895 192644 HC_gene_1111 411 + 190895 192644 -chrIV 192592 194519 HC_gene_1112 15 + 192592 194519 -chrIV 198652 199133 LC_gene_1113 1 + 198652 199133 -chrIV 199959 201845 HC_gene_1114 295 + 199959 201845 -chrIV 202798 205375 HC_gene_1115 23 + 202798 205375 -chrIV 212249 212529 HC_gene_1116 3 + 212249 212529 -chrIV 213072 215788 HC_gene_1117 6 + 213072 215788 -chrIV 216101 217228 HC_gene_1118 883 + 216101 217228 -chrIV 217565 218456 HC_gene_1119 1986 + 217565 218456 -chrIV 219039 219759 HC_gene_1120 6 + 219039 219759 -chrIV 220966 221643 HC_gene_1121 10 + 220966 221643 -chrIV 222005 223840 HC_gene_1122 52 + 222005 223840 -chrIV 224037 226914 HC_gene_1123 51 + 224037 226914 -chrIV 227355 229022 HC_gene_1124 319 + 227355 229022 -chrIV 229104 229586 HC_gene_1125 354 + 229104 229586 -chrIV 229887 230625 HC_gene_1126 4821 + 229887 230625 -chrIV 230978 232346 HC_gene_1127 15 + 230978 232346 -chrIV 232593 234051 HC_gene_1128 127 + 232593 234051 -chrIV 234855 236021 HC_gene_1129 59 + 234855 236021 -chrIV 238936 239528 MC_gene_1130 1 + 238936 239528 -chrIV 239856 241270 HC_gene_1131 456 + 239856 241270 -chrIV 241276 242476 HC_gene_1132 43 + 241276 242476 -chrIV 242310 245065 HC_gene_1133 122 + 242310 245065 -chrIV 245835 246603 HC_gene_1134 155 + 245835 246603 -chrIV 248282 251391 HC_gene_1135 13 + 248282 251391 -chrIV 251527 253993 HC_gene_1136 27 + 251527 253993 -chrIV 254180 255077 HC_gene_1137 3 + 254180 255077 -chrIV 255624 256587 LC_gene_1138 1 + 255624 256587 -chrIV 258833 263335 HC_gene_1139 17 + 258833 263335 -chrIV 264415 265077 HC_gene_1140 2 + 264415 265077 -chrIV 267669 268754 HC_gene_1141 44 + 267669 268754 -chrIV 268898 270091 HC_gene_1142 39 + 268898 270091 -chrIV 272195 273714 HC_gene_1143 12 + 272195 273714 -chrIV 274524 275159 LC_gene_1144 1 + 274524 275159 -chrIV 276789 280277 HC_gene_1145 9 + 276789 280277 -chrIV 283360 284533 HC_gene_1146 203 + 283360 284533 -chrIV 287028 289714 HC_gene_1147 146 + 287028 289714 -chrIV 289878 292428 HC_gene_1148 22 + 289878 292428 -chrIV 292757 293417 HC_gene_1149 298 + 292757 293417 -chrIV 294979 295549 MC_gene_1150 1 + 294979 295549 -chrIV 296525 298350 HC_gene_1151 27 + 296525 298350 -chrIV 301410 302431 HC_gene_1152 188 + 301410 302431 -chrIV 303159 305017 MC_gene_1153 1 + 303159 305017 -chrIV 305075 306710 HC_gene_1154 604 + 305075 306710 -chrIV 308384 309531 HC_gene_1155 1904 + 308384 309531 -chrIV 310513 311231 LC_gene_1156 1 + 310513 311231 -chrIV 312877 314202 HC_gene_1157 11 + 312877 314202 -chrIV 314476 314794 LC_gene_1158 1 + 314476 314794 -chrIV 315203 316272 LC_gene_1159 1 + 315203 316272 -chrIV 316567 316912 HC_gene_1160 5 + 316567 316912 -chrIV 320415 320876 HC_gene_1161 8 + 320415 320876 -chrIV 322193 323058 HC_gene_1162 6574 + 322193 323058 -chrIV 323294 323789 LC_gene_1163 1 + 323294 323789 -chrIV 323790 324500 HC_gene_1164 18 + 323790 324500 -chrIV 326431 329717 HC_gene_1165 5 + 326431 329717 -chrIV 329901 330265 LC_gene_1166 1 + 329901 330265 -chrIV 330710 333206 HC_gene_1167 282 + 330710 333206 -chrIV 334808 336527 HC_gene_1168 288 + 334808 336527 -chrIV 337442 338205 HC_gene_1169 172 + 337442 338205 -chrIV 340461 340899 MC_gene_1170 1 + 340461 340899 -chrIV 341566 344054 HC_gene_1171 29 + 341566 344054 -chrIV 342455 344223 HC_gene_1172 11 + 342455 344223 -chrIV 344694 345278 LC_gene_1173 1 + 344694 345278 -chrIV 345627 351192 HC_gene_1174 103 + 345627 351192 -chrIV 351425 352467 HC_gene_1175 10 + 351425 352467 -chrIV 352760 355447 HC_gene_1176 8 + 352760 355447 -chrIV 355747 357654 LC_gene_1177 1 + 355747 357654 -chrIV 357713 359092 HC_gene_1178 8 + 357713 359092 -chrIV 359578 359817 MC_gene_1179 1 + 359578 359817 -chrIV 359804 360884 MC_gene_1180 1 + 359804 360884 -chrIV 361780 362643 HC_gene_1181 2 + 361780 362643 -chrIV 363921 365046 HC_gene_1182 297 + 363921 365046 -chrIV 365498 365877 LC_gene_1183 1 + 365498 365877 -chrIV 366362 366745 HC_gene_1184 1 + 366362 366745 -chrIV 369311 371058 HC_gene_1185 91 + 369311 371058 -chrIV 371171 372039 HC_gene_1186 404 + 371171 372039 -chrIV 372202 372662 HC_gene_1187 258 + 372202 372662 -chrIV 373942 374545 LC_gene_1188 1 + 373942 374545 -chrIV 375365 375739 LC_gene_1189 1 + 375365 375739 -chrIV 378063 378879 MC_gene_1190 1 + 378063 378879 -chrIV 378793 379136 MC_gene_1191 1 + 378793 379136 -chrIV 381678 381953 HC_gene_1192 6 + 381678 381953 -chrIV 386236 389153 HC_gene_1193 7 + 386236 389153 -chrIV 394163 397296 HC_gene_1194 60 + 394163 397296 -chrIV 397469 399197 HC_gene_1195 17 + 397469 399197 -chrIV 399318 400939 HC_gene_1196 233 + 399318 400939 -chrIV 404490 405238 MC_gene_1197 1 + 404490 405238 -chrIV 405288 407942 MC_gene_1198 1 + 405288 407942 -chrIV 407647 408366 MC_gene_1199 2 + 407647 408366 -chrIV 409454 410249 MC_gene_1200 1 + 409454 410249 -chrIV 410392 410636 MC_gene_1201 1 + 410392 410636 -chrIV 411685 413232 HC_gene_1202 263 + 411685 413232 -chrIV 413927 415148 HC_gene_1203 37 + 413927 415148 -chrIV 417269 418912 MC_gene_1204 1 + 417269 418912 -chrIV 417445 420280 MC_gene_1205 1 + 417445 420280 -chrIV 421938 422503 MC_gene_1206 1 + 421938 422503 -chrIV 423710 423987 HC_gene_1207 1 + 423710 423987 -chrIV 424200 425862 HC_gene_1208 10 + 424200 425862 -chrIV 425994 427021 MC_gene_1209 1 + 425994 427021 -chrIV 427220 428563 HC_gene_1210 1332 + 427220 428563 -chrIV 428930 431163 HC_gene_1211 21 + 428930 431163 -chrIV 432300 433388 HC_gene_1212 80 + 432300 433388 -chrIV 433474 434109 HC_gene_1213 90 + 433474 434109 -chrIV 438007 439439 HC_gene_1214 454 + 438007 439439 -chrIV 439586 441509 HC_gene_1215 44 + 439586 441509 -chrIV 442581 442821 LC_gene_1216 1 + 442581 442821 -chrIV 442984 443756 HC_gene_1217 665 + 442984 443756 -chrIV 444557 446514 HC_gene_1218 41 + 444557 446514 -chrIV 447924 449495 HC_gene_1219 2 + 447924 449495 -chrIV 450007 450239 MC_gene_1220 1 + 450007 450239 -chrIV 450911 451462 LC_gene_1221 1 + 450911 451462 -chrIV 452828 453966 HC_gene_1222 1339 + 452828 453966 -chrIV 454083 455238 HC_gene_1223 128 + 454083 455238 -chrIV 455213 456748 HC_gene_1224 43 + 455213 456748 -chrIV 457358 458047 MC_gene_1225 1 + 457358 458047 -chrIV 461644 462874 HC_gene_1226 123 + 461644 462874 -chrIV 463912 465631 MC_gene_1227 1 + 463912 465631 -chrIV 465596 470606 HC_gene_1228 136 + 465596 470606 -chrIV 470943 471867 HC_gene_1229 4 + 470943 471867 -chrIV 471819 473223 HC_gene_1230 1622 + 471819 473223 -chrIV 473139 473873 HC_gene_1231 46 + 473139 473873 -chrIV 473993 476394 HC_gene_1232 6 + 473993 476394 -chrIV 477775 478428 HC_gene_1233 4 + 477775 478428 -chrIV 482618 483377 MC_gene_1234 1 + 482618 483377 -chrIV 483663 484058 MC_gene_1235 1 + 483663 484058 -chrIV 485255 486416 LC_gene_1236 1 + 485255 486416 -chrIV 486723 488057 HC_gene_1237 28 + 486723 488057 -chrIV 489483 491044 HC_gene_1238 888 + 489483 491044 -chrIV 491314 492414 HC_gene_1239 2405 + 491314 492414 -chrIV 492436 493626 LC_gene_1240 1 + 492436 493626 -chrIV 501380 501703 HC_gene_1241 21 + 501380 501703 -chrIV 501775 502129 MC_gene_1242 1 + 501775 502129 -chrIV 503489 504030 HC_gene_1243 125 + 503489 504030 -chrIV 505087 505411 MC_gene_1244 1 + 505087 505411 -chrIV 505905 506530 MC_gene_1245 1 + 505905 506530 -chrIV 506550 509750 HC_gene_1246 1939 + 506550 509750 -chrIV 512557 513667 HC_gene_1247 20 + 512557 513667 -chrIV 517987 519420 LC_gene_1248 1 + 517987 519420 -chrIV 520043 521209 LC_gene_1249 1 + 520043 521209 -chrIV 521673 523206 HC_gene_1250 673 + 521673 523206 -chrIV 524988 525383 HC_gene_1251 13 + 524988 525383 -chrIV 525417 527298 HC_gene_1252 1008 + 525417 527298 -chrIV 527631 538563 MC_gene_1253 1 + 527631 538563 -chrIV 539761 540603 HC_gene_1254 140 + 539761 540603 -chrIV 542057 542676 MC_gene_1255 1 + 542057 542676 -chrIV 542334 542693 MC_gene_1256 1 + 542334 542693 -chrIV 542578 543599 MC_gene_1257 1 + 542578 543599 -chrIV 544073 544826 HC_gene_1258 39 + 544073 544826 -chrIV 545318 545847 LC_gene_1259 1 + 545318 545847 -chrIV 546597 547772 HC_gene_1260 345 + 546597 547772 -chrIV 551734 553041 HC_gene_1261 180 + 551734 553041 -chrIV 553224 555312 HC_gene_1262 12 + 553224 555312 -chrIV 556744 557096 HC_gene_1263 4 + 556744 557096 -chrIV 560717 561076 MC_gene_1264 1 + 560717 561076 -chrIV 563231 565021 HC_gene_1265 267 + 563231 565021 -chrIV 565877 567743 HC_gene_1266 25 + 565877 567743 -chrIV 567656 568749 MC_gene_1267 1 + 567656 568749 -chrIV 570058 570630 HC_gene_1268 6 + 570058 570630 -chrIV 570565 572198 HC_gene_1269 2 + 570565 572198 -chrIV 572253 572616 HC_gene_1270 1 + 572253 572616 -chrIV 572799 574139 HC_gene_1271 85 + 572799 574139 -chrIV 574145 575920 HC_gene_1272 31 + 574145 575920 -chrIV 576094 579183 HC_gene_1273 304 + 576094 579183 -chrIV 579423 580533 HC_gene_1274 4207 + 579423 580533 -chrIV 580640 582578 HC_gene_1275 15 + 580640 582578 -chrIV 582944 583574 MC_gene_1276 1 + 582944 583574 -chrIV 583671 585055 HC_gene_1277 135 + 583671 585055 -chrIV 585621 586478 MC_gene_1278 1 + 585621 586478 -chrIV 588008 588864 HC_gene_1279 1 + 588008 588864 -chrIV 589769 590069 MC_gene_1280 1 + 589769 590069 -chrIV 591010 591585 HC_gene_1281 1 + 591010 591585 -chrIV 591629 592128 HC_gene_1282 2 + 591629 592128 -chrIV 592361 593232 HC_gene_1283 175 + 592361 593232 -chrIV 593686 596861 HC_gene_1284 87 + 593686 596861 -chrIV 596982 598480 HC_gene_1285 53 + 596982 598480 -chrIV 598411 598972 HC_gene_1286 7 + 598411 598972 -chrIV 600521 602810 HC_gene_1287 7340 + 600521 602810 -chrIV 603041 603744 HC_gene_1288 115 + 603041 603744 -chrIV 603974 607295 HC_gene_1289 7 + 603974 607295 -chrIV 610360 612071 HC_gene_1290 17 + 610360 612071 -chrIV 612049 613435 HC_gene_1291 106 + 612049 613435 -chrIV 614238 616304 MC_gene_1292 1 + 614238 616304 -chrIV 616312 616904 HC_gene_1293 2 + 616312 616904 -chrIV 617457 618423 HC_gene_1294 13 + 617457 618423 -chrIV 620415 620995 LC_gene_1295 1 + 620415 620995 -chrIV 621989 624901 HC_gene_1296 24 + 621989 624901 -chrIV 625382 626481 MC_gene_1297 1 + 625382 626481 -chrIV 629851 630824 HC_gene_1298 283 + 629851 630824 -chrIV 631258 633316 HC_gene_1299 3 + 631258 633316 -chrIV 634536 636181 HC_gene_1300 7 + 634536 636181 -chrIV 636572 640039 HC_gene_1301 16 + 636572 640039 -chrIV 644200 644882 LC_gene_1302 1 + 644200 644882 -chrIV 650520 651914 LC_gene_1303 1 + 650520 651914 -chrIV 652717 654772 HC_gene_1304 726 + 652717 654772 -chrIV 653576 655729 HC_gene_1305 296 + 653576 655729 -chrIV 657770 661228 HC_gene_1306 10 + 657770 661228 -chrIV 665122 665372 HC_gene_1307 1 + 665122 665372 -chrIV 666980 667908 HC_gene_1308 2 + 666980 667908 -chrIV 668291 671107 MC_gene_1309 4 + 668291 671107 -chrIV 671254 673456 HC_gene_1310 12 + 671254 673456 -chrIV 676045 678009 HC_gene_1311 21 + 676045 678009 -chrIV 678209 679228 LC_gene_1312 1 + 678209 679228 -chrIV 680210 680503 HC_gene_1313 7 + 680210 680503 -chrIV 680521 681450 MC_gene_1314 1 + 680521 681450 -chrIV 682048 682723 HC_gene_1315 180 + 682048 682723 -chrIV 683749 683964 MC_gene_1316 1 + 683749 683964 -chrIV 685850 688171 HC_gene_1317 5 + 685850 688171 -chrIV 688141 690593 HC_gene_1318 67 + 688141 690593 -chrIV 690964 691485 MC_gene_1319 2 + 690964 691485 -chrIV 693475 694284 HC_gene_1320 105 + 693475 694284 -chrIV 694410 698047 HC_gene_1321 6 + 694410 698047 -chrIV 699734 701830 HC_gene_1322 16 + 699734 701830 -chrIV 703141 703488 HC_gene_1323 2 + 703141 703488 -chrIV 704078 705551 HC_gene_1324 15 + 704078 705551 -chrIV 708788 709304 HC_gene_1325 42 + 708788 709304 -chrIV 709503 713252 HC_gene_1326 17 + 709503 713252 -chrIV 715686 716122 MC_gene_1327 1 + 715686 716122 -chrIV 718673 719854 HC_gene_1328 2 + 718673 719854 -chrIV 720226 720456 MC_gene_1329 1 + 720226 720456 -chrIV 720620 721005 HC_gene_1330 12 + 720620 721005 -chrIV 722294 722993 HC_gene_1331 1 + 722294 722993 -chrIV 723023 726289 MC_gene_1332 2 + 723023 726289 -chrIV 727863 728094 LC_gene_1333 1 + 727863 728094 -chrIV 728172 733560 HC_gene_1334 35 + 728172 733560 -chrIV 733655 734161 HC_gene_1335 3 + 733655 734161 -chrIV 734122 735207 HC_gene_1336 70 + 734122 735207 -chrIV 736176 738410 LC_gene_1337 1 + 736176 738410 -chrIV 742487 743417 LC_gene_1338 1 + 742487 743417 -chrIV 743480 744017 MC_gene_1339 1 + 743480 744017 -chrIV 744252 745624 MC_gene_1340 1 + 744252 745624 -chrIV 746678 748557 HC_gene_1341 105 + 746678 748557 -chrIV 751181 753267 HC_gene_1342 13 + 751181 753267 -chrIV 754416 755182 LC_gene_1343 1 + 754416 755182 -chrIV 755722 759989 MC_gene_1344 1 + 755722 759989 -chrIV 761713 763926 HC_gene_1345 3 + 761713 763926 -chrIV 763990 764445 MC_gene_1346 1 + 763990 764445 -chrIV 764168 764535 MC_gene_1347 1 + 764168 764535 -chrIV 764828 766549 HC_gene_1348 222 + 764828 766549 -chrIV 768309 768482 MC_gene_1349 1 + 768309 768482 -chrIV 769191 769465 MC_gene_1350 1 + 769191 769465 -chrIV 769489 770033 HC_gene_1351 295 + 769489 770033 -chrIV 770320 771581 HC_gene_1352 1244 + 770320 771581 -chrIV 771778 775823 HC_gene_1353 9 + 771778 775823 -chrIV 775983 776437 HC_gene_1354 2 + 775983 776437 -chrIV 776457 777414 MC_gene_1355 1 + 776457 777414 -chrIV 779018 780393 HC_gene_1356 125 + 779018 780393 -chrIV 781348 782056 HC_gene_1357 123 + 781348 782056 -chrIV 784832 786854 HC_gene_1358 55 + 784832 786854 -chrIV 789412 790190 HC_gene_1359 218 + 789412 790190 -chrIV 790286 792128 HC_gene_1360 23 + 790286 792128 -chrIV 794518 795113 MC_gene_1361 1 + 794518 795113 -chrIV 803874 806576 HC_gene_1362 22 + 803874 806576 -chrIV 807061 807866 MC_gene_1363 4 + 807061 807866 -chrIV 808269 810559 HC_gene_1364 232 + 808269 810559 -chrIV 812085 813221 HC_gene_1365 379 + 812085 813221 -chrIV 814421 816891 HC_gene_1366 48 + 814421 816891 -chrIV 816778 817670 HC_gene_1367 329 + 816778 817670 -chrIV 817846 818699 HC_gene_1368 345 + 817846 818699 -chrIV 819333 820873 HC_gene_1369 17 + 819333 820873 -chrIV 821147 825826 HC_gene_1370 2 + 821147 825826 -chrIV 827550 829419 HC_gene_1371 92 + 827550 829419 -chrIV 829568 830490 HC_gene_1372 54 + 829568 830490 -chrIV 831790 832856 MC_gene_1373 3 + 831790 832856 -chrIV 836129 838230 HC_gene_1374 397 + 836129 838230 -chrIV 838348 840533 HC_gene_1375 79 + 838348 840533 -chrIV 842320 843558 HC_gene_1376 12 + 842320 843558 -chrIV 843852 845266 LC_gene_1377 1 + 843852 845266 -chrIV 845480 846021 HC_gene_1378 4 + 845480 846021 -chrIV 848358 850286 HC_gene_1379 46 + 848358 850286 -chrIV 851193 852617 HC_gene_1380 37 + 851193 852617 -chrIV 856311 857346 HC_gene_1381 117 + 856311 857346 -chrIV 858107 859277 HC_gene_1382 70 + 858107 859277 -chrIV 859324 861618 HC_gene_1383 16 + 859324 861618 -chrIV 861705 864939 HC_gene_1384 21 + 861705 864939 -chrIV 868098 870681 HC_gene_1385 30 + 868098 870681 -chrIV 871040 871657 HC_gene_1386 251 + 871040 871657 -chrIV 873272 875388 MC_gene_1387 1 + 873272 875388 -chrIV 874541 877784 MC_gene_1388 1 + 874541 877784 -chrIV 875745 877871 MC_gene_1389 1 + 875745 877871 -chrIV 883470 884261 MC_gene_1390 1 + 883470 884261 -chrIV 884686 887018 HC_gene_1391 93 + 884686 887018 -chrIV 887165 889099 HC_gene_1392 323 + 887165 889099 -chrIV 889501 892768 HC_gene_1393 1 + 889501 892768 -chrIV 892244 892846 HC_gene_1394 1 + 892244 892846 -chrIV 892757 894026 HC_gene_1395 162 + 892757 894026 -chrIV 894525 899624 HC_gene_1396 1 + 894525 899624 -chrIV 904290 905128 HC_gene_1397 5 + 904290 905128 -chrIV 907333 910082 HC_gene_1398 19 + 907333 910082 -chrIV 909858 911466 HC_gene_1399 12 + 909858 911466 -chrIV 911743 913804 HC_gene_1400 3 + 911743 913804 -chrIV 913932 914282 MC_gene_1401 1 + 913932 914282 -chrIV 915456 916090 HC_gene_1402 2954 + 915456 916090 -chrIV 916461 917283 HC_gene_1403 1771 + 916461 917283 -chrIV 917444 921977 HC_gene_1404 4 + 917444 921977 -chrIV 922975 924219 LC_gene_1405 1 + 922975 924219 -chrIV 924682 926223 HC_gene_1406 50 + 924682 926223 -chrIV 927190 929275 HC_gene_1407 101 + 927190 929275 -chrIV 930450 933380 HC_gene_1408 79 + 930450 933380 -chrIV 933502 935564 HC_gene_1409 23 + 933502 935564 -chrIV 936148 936430 LC_gene_1410 1 + 936148 936430 -chrIV 936471 937783 HC_gene_1411 56 + 936471 937783 -chrIV 945329 945854 HC_gene_1412 62 + 945329 945854 -chrIV 946716 948557 HC_gene_1413 12 + 946716 948557 -chrIV 950536 952599 HC_gene_1414 18 + 950536 952599 -chrIV 952735 954137 HC_gene_1415 136 + 952735 954137 -chrIV 954274 955102 HC_gene_1416 22 + 954274 955102 -chrIV 955662 957765 HC_gene_1417 29 + 955662 957765 -chrIV 957825 958689 MC_gene_1418 1 + 957825 958689 -chrIV 960324 963284 HC_gene_1419 48 + 960324 963284 -chrIV 963402 964756 HC_gene_1420 17 + 963402 964756 -chrIV 965024 967054 HC_gene_1421 12 + 965024 967054 -chrIV 968061 969774 HC_gene_1422 6 + 968061 969774 -chrIV 976514 977518 MC_gene_1423 1 + 976514 977518 -chrIV 977519 978753 LC_gene_1424 1 + 977519 978753 -chrIV 978838 979344 MC_gene_1425 1 + 978838 979344 -chrIV 979511 980188 HC_gene_1426 16 + 979511 980188 -chrIV 982033 983258 MC_gene_1427 1 + 982033 983258 -chrIV 992840 993144 HC_gene_1428 2 + 992840 993144 -chrIV 993185 994439 HC_gene_1429 96 + 993185 994439 -chrIV 998695 1000066 HC_gene_1430 30 + 998695 1000066 -chrIV 1003964 1005254 HC_gene_1431 25 + 1003964 1005254 -chrIV 1005594 1008769 HC_gene_1432 7 + 1005594 1008769 -chrIV 1008971 1009942 HC_gene_1433 173 + 1008971 1009942 -chrIV 1010131 1011309 HC_gene_1434 1 + 1010131 1011309 -chrIV 1011571 1013199 HC_gene_1435 65 + 1011571 1013199 -chrIV 1013398 1014286 MC_gene_1436 1 + 1013398 1014286 -chrIV 1015064 1016966 MC_gene_1437 1 + 1015064 1016966 -chrIV 1017817 1018106 LC_gene_1438 1 + 1017817 1018106 -chrIV 1019098 1020689 HC_gene_1439 39 + 1019098 1020689 -chrIV 1019299 1021769 HC_gene_1440 85 + 1019299 1021769 -chrIV 1022680 1023107 HC_gene_1441 1 + 1022680 1023107 -chrIV 1024939 1025390 LC_gene_1442 1 + 1024939 1025390 -chrIV 1030263 1030502 LC_gene_1443 1 + 1030263 1030502 -chrIV 1030531 1031758 MC_gene_1444 1 + 1030531 1031758 -chrIV 1034622 1035244 HC_gene_1445 2 + 1034622 1035244 -chrIV 1035781 1038266 HC_gene_1446 103 + 1035781 1038266 -chrIV 1039728 1043165 HC_gene_1447 15 + 1039728 1043165 -chrIV 1045368 1045791 MC_gene_1448 1 + 1045368 1045791 -chrIV 1049761 1050520 MC_gene_1449 2 + 1049761 1050520 -chrIV 1055157 1056060 HC_gene_1450 150 + 1055157 1056060 -chrIV 1056527 1057726 HC_gene_1451 448 + 1056527 1057726 -chrIV 1059565 1061497 HC_gene_1452 71 + 1059565 1061497 -chrIV 1063291 1067560 HC_gene_1453 7 + 1063291 1067560 -chrIV 1067686 1068597 HC_gene_1454 86 + 1067686 1068597 -chrIV 1071257 1071889 MC_gene_1455 1 + 1071257 1071889 -chrIV 1071890 1072812 HC_gene_1456 2 + 1071890 1072812 -chrIV 1074171 1074805 LC_gene_1457 1 + 1074171 1074805 -chrIV 1075820 1078006 HC_gene_1458 16 + 1075820 1078006 -chrIV 1078738 1079463 LC_gene_1459 1 + 1078738 1079463 -chrIV 1080795 1081067 HC_gene_1460 11 + 1080795 1081067 -chrIV 1081210 1081660 LC_gene_1461 1 + 1081210 1081660 -chrIV 1085038 1087095 HC_gene_1462 20 + 1085038 1087095 -chrIV 1087547 1089098 HC_gene_1463 30 + 1087547 1089098 -chrIV 1090453 1091078 LC_gene_1464 1 + 1090453 1091078 -chrIV 1092732 1093471 HC_gene_1465 2 + 1092732 1093471 -chrIV 1093757 1095254 HC_gene_1466 45 + 1093757 1095254 -chrIV 1095626 1096124 MC_gene_1467 1 + 1095626 1096124 -chrIV 1097131 1101694 MC_gene_1468 1 + 1097131 1101694 -chrIV 1098172 1102019 MC_gene_1469 1 + 1098172 1102019 -chrIV 1102148 1103557 HC_gene_1470 6 + 1102148 1103557 -chrIV 1103684 1105053 HC_gene_1471 11 + 1103684 1105053 -chrIV 1106068 1106402 MC_gene_1472 1 + 1106068 1106402 -chrIV 1108244 1109998 HC_gene_1473 132 + 1108244 1109998 -chrIV 1110561 1111754 HC_gene_1474 46 + 1110561 1111754 -chrIV 1112452 1114117 LC_gene_1475 1 + 1112452 1114117 -chrIV 1114355 1114879 MC_gene_1476 1 + 1114355 1114879 -chrIV 1117115 1120298 HC_gene_1477 1 + 1117115 1120298 -chrIV 1125356 1126134 LC_gene_1478 1 + 1125356 1126134 -chrIV 1127807 1129577 HC_gene_1479 18 + 1127807 1129577 -chrIV 1129556 1130940 HC_gene_1480 25 + 1129556 1130940 -chrIV 1130977 1133144 HC_gene_1481 14 + 1130977 1133144 -chrIV 1135766 1137002 HC_gene_1482 1 + 1135766 1137002 -chrIV 1139204 1140598 HC_gene_1483 24 + 1139204 1140598 -chrIV 1140809 1141128 HC_gene_1484 3 + 1140809 1141128 -chrIV 1143372 1144924 HC_gene_1485 46 + 1143372 1144924 -chrIV 1145067 1146237 HC_gene_1486 36 + 1145067 1146237 -chrIV 1146238 1147240 HC_gene_1487 81 + 1146238 1147240 -chrIV 1147215 1149562 LC_gene_1488 1 + 1147215 1149562 -chrIV 1149996 1150597 LC_gene_1489 1 + 1149996 1150597 -chrIV 1151144 1151779 LC_gene_1490 1 + 1151144 1151779 -chrIV 1153540 1154162 MC_gene_1491 1 + 1153540 1154162 -chrIV 1156629 1157896 MC_gene_1492 1 + 1156629 1157896 -chrIV 1157564 1158087 MC_gene_1493 1 + 1157564 1158087 -chrIV 1157695 1158768 MC_gene_1494 1 + 1157695 1158768 -chrIV 1157832 1158951 MC_gene_1495 1 + 1157832 1158951 -chrIV 1162084 1162921 HC_gene_1496 27 + 1162084 1162921 -chrIV 1165429 1165635 MC_gene_1497 1 + 1165429 1165635 -chrIV 1165559 1166077 MC_gene_1498 1 + 1165559 1166077 -chrIV 1166698 1167030 HC_gene_1499 34 + 1166698 1167030 -chrIV 1167079 1168936 MC_gene_1500 1 + 1167079 1168936 -chrIV 1169112 1170261 HC_gene_1501 52 + 1169112 1170261 -chrIV 1172279 1172986 LC_gene_1502 1 + 1172279 1172986 -chrIV 1174467 1174856 HC_gene_1503 12 + 1174467 1174856 -chrIV 1175027 1175723 HC_gene_1504 34 + 1175027 1175723 -chrIV 1178443 1181410 HC_gene_1505 12 + 1178443 1181410 -chrIV 1181631 1184513 HC_gene_1506 861 + 1181631 1184513 -chrIV 1184619 1185960 HC_gene_1507 64 + 1184619 1185960 -chrIV 1186077 1189547 HC_gene_1508 16 + 1186077 1189547 -chrIV 1190010 1191929 HC_gene_1509 39 + 1190010 1191929 -chrIV 1192730 1194097 MC_gene_1510 1 + 1192730 1194097 -chrIV 1195429 1196546 LC_gene_1511 1 + 1195429 1196546 -chrIV 1196532 1197827 MC_gene_1512 1 + 1196532 1197827 -chrIV 1199006 1201378 HC_gene_1513 3 + 1199006 1201378 -chrIV 1201924 1202656 HC_gene_1514 2 + 1201924 1202656 -chrIV 1202104 1202839 HC_gene_1515 455 + 1202104 1202839 -chrIV 1203055 1204517 MC_gene_1516 1 + 1203055 1204517 -chrIV 1206654 1207051 MC_gene_1517 1 + 1206654 1207051 -chrIV 1209314 1212623 HC_gene_1518 7 + 1209314 1212623 -chrIV 1212790 1213789 HC_gene_1519 99 + 1212790 1213789 -chrIV 1213851 1214997 HC_gene_1520 143 + 1213851 1214997 -chrIV 1219355 1219551 HC_gene_1521 1 + 1219355 1219551 -chrIV 1222712 1223445 HC_gene_1522 233 + 1222712 1223445 -chrIV 1224755 1225310 HC_gene_1523 104 + 1224755 1225310 -chrIV 1226672 1228372 HC_gene_1524 23 + 1226672 1228372 -chrIV 1228539 1229321 HC_gene_1525 581 + 1228539 1229321 -chrIV 1230126 1233310 HC_gene_1526 9 + 1230126 1233310 -chrIV 1234108 1236270 HC_gene_1527 162 + 1234108 1236270 -chrIV 1236473 1238351 HC_gene_1528 676 + 1236473 1238351 -chrIV 1238615 1239091 HC_gene_1529 5 + 1238615 1239091 -chrIV 1239409 1239991 HC_gene_1530 3766 + 1239409 1239991 -chrIV 1240090 1241174 MC_gene_1531 1 + 1240090 1241174 -chrIV 1241770 1243169 HC_gene_1532 2 + 1241770 1243169 -chrIV 1243201 1245964 HC_gene_1533 675 + 1243201 1245964 -chrIV 1246071 1248094 HC_gene_1534 4 + 1246071 1248094 -chrIV 1250133 1251757 HC_gene_1535 167 + 1250133 1251757 -chrIV 1252013 1254977 HC_gene_1536 10 + 1252013 1254977 -chrIV 1258214 1261386 HC_gene_1537 83 + 1258214 1261386 -chrIV 1261626 1263063 HC_gene_1538 231 + 1261626 1263063 -chrIV 1263188 1266335 HC_gene_1539 62 + 1263188 1266335 -chrIV 1267093 1267429 HC_gene_1540 22 + 1267093 1267429 -chrIV 1267394 1269567 HC_gene_1541 1 + 1267394 1269567 -chrIV 1269861 1270954 HC_gene_1542 637 + 1269861 1270954 -chrIV 1271041 1272257 HC_gene_1543 48 + 1271041 1272257 -chrIV 1274181 1274790 MC_gene_1544 1 + 1274181 1274790 -chrIV 1275379 1276418 HC_gene_1545 20 + 1275379 1276418 -chrIV 1276611 1277207 MC_gene_1546 1 + 1276611 1277207 -chrIV 1277591 1279199 MC_gene_1547 3 + 1277591 1279199 -chrIV 1279078 1283914 HC_gene_1548 13 + 1279078 1283914 -chrIV 1288264 1289029 HC_gene_1549 4 + 1288264 1289029 -chrIV 1289365 1291083 HC_gene_1550 3 + 1289365 1291083 -chrIV 1292140 1292357 HC_gene_1551 1 + 1292140 1292357 -chrIV 1292504 1293199 MC_gene_1552 1 + 1292504 1293199 -chrIV 1293388 1294423 LC_gene_1553 1 + 1293388 1294423 -chrIV 1294666 1295636 HC_gene_1554 188 + 1294666 1295636 -chrIV 1295782 1296792 HC_gene_1555 10 + 1295782 1296792 -chrIV 1297206 1298042 LC_gene_1556 1 + 1297206 1298042 -chrIV 1298367 1301046 HC_gene_1557 16 + 1298367 1301046 -chrIV 1301334 1302220 HC_gene_1558 4 + 1301334 1302220 -chrIV 1301588 1302714 HC_gene_1559 1985 + 1301588 1302714 -chrIV 1303123 1305461 HC_gene_1560 9 + 1303123 1305461 -chrIV 1305984 1306248 MC_gene_1561 1 + 1305984 1306248 -chrIV 1308675 1311878 HC_gene_1562 27 + 1308675 1311878 -chrIV 1311948 1314936 HC_gene_1563 4 + 1311948 1314936 -chrIV 1318125 1319264 LC_gene_1564 1 + 1318125 1319264 -chrIV 1319441 1319874 MC_gene_1565 1 + 1319441 1319874 -chrIV 1320016 1322041 HC_gene_1566 5 + 1320016 1322041 -chrIV 1322171 1323485 HC_gene_1567 133 + 1322171 1323485 -chrIV 1328761 1330967 HC_gene_1568 657 + 1328761 1330967 -chrIV 1331139 1332952 HC_gene_1569 30 + 1331139 1332952 -chrIV 1334574 1337114 HC_gene_1570 4 + 1334574 1337114 -chrIV 1337284 1339487 HC_gene_1571 11 + 1337284 1339487 -chrIV 1339434 1340828 HC_gene_1572 16 + 1339434 1340828 -chrIV 1342429 1344559 MC_gene_1573 2 + 1342429 1344559 -chrIV 1350203 1352401 HC_gene_1574 19 + 1350203 1352401 -chrIV 1353722 1354829 LC_gene_1575 1 + 1353722 1354829 -chrIV 1356027 1357634 HC_gene_1576 25 + 1356027 1357634 -chrIV 1359190 1359499 LC_gene_1577 1 + 1359190 1359499 -chrIV 1359894 1361056 HC_gene_1578 2664 + 1359894 1361056 -chrIV 1361039 1362338 HC_gene_1579 2 + 1361039 1362338 -chrIV 1362726 1365301 HC_gene_1580 123 + 1362726 1365301 -chrIV 1365617 1366270 LC_gene_1581 1 + 1365617 1366270 -chrIV 1367440 1369493 HC_gene_1582 57 + 1367440 1369493 -chrIV 1369674 1373066 HC_gene_1583 1 + 1369674 1373066 -chrIV 1371811 1379689 HC_gene_1584 14 + 1371811 1379689 -chrIV 1379047 1379763 HC_gene_1585 26 + 1379047 1379763 -chrIV 1382222 1383017 MC_gene_1586 1 + 1382222 1383017 -chrIV 1383681 1384870 HC_gene_1587 40 + 1383681 1384870 -chrIV 1385151 1385433 HC_gene_1588 3 + 1385151 1385433 -chrIV 1386017 1386640 HC_gene_1589 84 + 1386017 1386640 -chrIV 1386769 1388580 HC_gene_1590 40 + 1386769 1388580 -chrIV 1388769 1393357 HC_gene_1591 13 + 1388769 1393357 -chrIV 1395005 1398240 HC_gene_1592 7 + 1395005 1398240 -chrIV 1399025 1399969 HC_gene_1593 67 + 1399025 1399969 -chrIV 1401609 1402684 HC_gene_1594 2596 + 1401609 1402684 -chrIV 1402918 1403219 HC_gene_1595 34 + 1402918 1403219 -chrIV 1403264 1404534 HC_gene_1596 91 + 1403264 1404534 -chrIV 1406080 1408848 HC_gene_1597 7 + 1406080 1408848 -chrIV 1410557 1411272 MC_gene_1598 1 + 1410557 1411272 -chrIV 1410619 1411978 MC_gene_1599 1 + 1410619 1411978 -chrIV 1412104 1414423 HC_gene_1600 52 + 1412104 1414423 -chrIV 1414536 1416489 HC_gene_1601 20 + 1414536 1416489 -chrIV 1417095 1418561 HC_gene_1602 14 + 1417095 1418561 -chrIV 1419121 1420361 LC_gene_1603 1 + 1419121 1420361 -chrIV 1420651 1421063 LC_gene_1604 1 + 1420651 1421063 -chrIV 1421129 1422695 HC_gene_1605 295 + 1421129 1422695 -chrIV 1422732 1424774 HC_gene_1606 12 + 1422732 1424774 -chrIV 1427386 1428353 MC_gene_1607 1 + 1427386 1428353 -chrIV 1431001 1432310 HC_gene_1608 17 + 1431001 1432310 -chrIV 1432616 1434750 LC_gene_1609 1 + 1432616 1434750 -chrIV 1434768 1435967 HC_gene_1610 236 + 1434768 1435967 -chrIV 1436114 1436708 HC_gene_1611 91 + 1436114 1436708 -chrIV 1436895 1438089 HC_gene_1612 74 + 1436895 1438089 -chrIV 1445762 1446166 MC_gene_1613 1 + 1445762 1446166 -chrIV 1447835 1450222 MC_gene_1614 1 + 1447835 1450222 -chrIV 1451336 1453125 HC_gene_1615 16 + 1451336 1453125 -chrIV 1454621 1454930 LC_gene_1616 1 + 1454621 1454930 -chrIV 1456074 1456718 HC_gene_1617 19 + 1456074 1456718 -chrIV 1457520 1459374 LC_gene_1618 1 + 1457520 1459374 -chrIV 1459769 1460841 LC_gene_1619 1 + 1459769 1460841 -chrIV 1465543 1466336 MC_gene_1620 1 + 1465543 1466336 -chrIV 1469353 1469854 HC_gene_1621 759 + 1469353 1469854 -chrIV 1469990 1470512 HC_gene_1622 62 + 1469990 1470512 -chrIV 1470993 1471550 HC_gene_1623 507 + 1470993 1471550 -chrIV 1473200 1474852 HC_gene_1624 31 + 1473200 1474852 -chrIV 1474979 1476589 LC_gene_1625 1 + 1474979 1476589 -chrIV 1476866 1478485 HC_gene_1626 116 + 1476866 1478485 -chrIV 1478571 1480212 HC_gene_1627 61 + 1478571 1480212 -chrIV 1480415 1481334 HC_gene_1628 233 + 1480415 1481334 -chrIV 1483730 1485585 HC_gene_1629 2 + 1483730 1485585 -chrIV 1486257 1487117 LC_gene_1630 1 + 1486257 1487117 -chrIV 1487602 1489206 LC_gene_1631 1 + 1487602 1489206 -chrIV 1490555 1493214 HC_gene_1632 302 + 1490555 1493214 -chrIV 1494266 1495997 HC_gene_1633 19 + 1494266 1495997 -chrIV 1498180 1499496 HC_gene_1634 91 + 1498180 1499496 -chrIV 1500709 1501144 HC_gene_1635 9 + 1500709 1501144 -chrIV 1507062 1507979 LC_gene_1636 1 + 1507062 1507979 -chrIV 1508234 1509863 MC_gene_1637 1 + 1508234 1509863 -chrIV 1510007 1511868 HC_gene_1638 5 + 1510007 1511868 -chrIV 1510834 1511922 HC_gene_1639 46 + 1510834 1511922 -chrIV 1512060 1513968 HC_gene_1640 38 + 1512060 1513968 -chrIV 1514296 1515069 HC_gene_1641 2 + 1514296 1515069 -chrIV 1516592 1517711 MC_gene_1642 1 + 1516592 1517711 -chrIV 1517137 1517774 MC_gene_1643 1 + 1517137 1517774 -chrIV 1518282 1518786 HC_gene_1644 11 + 1518282 1518786 -chrIV 1519244 1520879 LC_gene_1645 1 + 1519244 1520879 -chrIV 1521136 1522421 HC_gene_1646 13 + 1521136 1522421 -chrIV 1522657 1523758 LC_gene_1647 1 + 1522657 1523758 -chrIV 3447 5627 MC_gene_1648 1 - 3447 5627 -chrIV 8570 10055 LC_gene_1649 1 - 8570 10055 -chrIV 14308 15732 LC_gene_1650 1 - 14308 15732 -chrIV 17465 19904 HC_gene_1651 8 - 17465 19904 -chrIV 20293 21032 LC_gene_1652 1 - 20293 21032 -chrIV 21186 21888 MC_gene_1653 1 - 21186 21888 -chrIV 26356 29879 MC_gene_1654 1 - 26356 29879 -chrIV 28829 30476 MC_gene_1655 1 - 28829 30476 -chrIV 31801 33211 MC_gene_1656 1 - 31801 33211 -chrIV 33266 34041 HC_gene_1657 176 - 33266 34041 -chrIV 34143 36561 HC_gene_1658 22 - 34143 36561 -chrIV 38263 38626 MC_gene_1659 1 - 38263 38626 -chrIV 38776 42356 HC_gene_1660 9 - 38776 42356 -chrIV 46196 48071 MC_gene_1661 3 - 46196 48071 -chrIV 48030 50106 MC_gene_1662 1 - 48030 50106 -chrIV 50904 52201 HC_gene_1663 218 - 50904 52201 -chrIV 54151 56711 HC_gene_1664 13 - 54151 56711 -chrIV 56936 60725 MC_gene_1665 7 - 56936 60725 -chrIV 60481 60917 MC_gene_1666 1 - 60481 60917 -chrIV 60494 61257 MC_gene_1667 2 - 60494 61257 -chrIV 60561 61893 MC_gene_1668 1 - 60561 61893 -chrIV 61788 65039 MC_gene_1669 3 - 61788 65039 -chrIV 65465 65958 MC_gene_1670 1 - 65465 65958 -chrIV 65964 68771 HC_gene_1671 55 - 65964 68771 -chrIV 68863 70329 HC_gene_1672 7 - 68863 70329 -chrIV 70485 74035 HC_gene_1673 23 - 70485 74035 -chrIV 74327 74817 LC_gene_1674 1 - 74327 74817 -chrIV 76636 76903 MC_gene_1675 1 - 76636 76903 -chrIV 77148 77986 HC_gene_1676 296 - 77148 77986 -chrIV 77194 78251 HC_gene_1677 14 - 77194 78251 -chrIV 79136 80492 HC_gene_1678 6 - 79136 80492 -chrIV 84092 85943 MC_gene_1679 2 - 84092 85943 -chrIV 85933 87249 MC_gene_1680 1 - 85933 87249 -chrIV 92464 93952 HC_gene_1681 80 - 92464 93952 -chrIV 95771 98131 HC_gene_1682 19 - 95771 98131 -chrIV 99221 101072 HC_gene_1683 80 - 99221 101072 -chrIV 101164 103423 HC_gene_1684 4 - 101164 103423 -chrIV 103388 104669 HC_gene_1685 377 - 103388 104669 -chrIV 104821 106831 HC_gene_1686 8 - 104821 106831 -chrIV 115775 116100 HC_gene_1687 1 - 115775 116100 -chrIV 116996 117948 MC_gene_1688 1 - 116996 117948 -chrIV 118483 121788 HC_gene_1689 51 - 118483 121788 -chrIV 123707 125155 HC_gene_1690 53 - 123707 125155 -chrIV 125509 126466 HC_gene_1691 11 - 125509 126466 -chrIV 129675 130008 LC_gene_1692 1 - 129675 130008 -chrIV 130187 130507 HC_gene_1693 17830 - 130187 130507 -chrIV 130704 132712 HC_gene_1694 23 - 130704 132712 -chrIV 134720 135533 MC_gene_1695 1 - 134720 135533 -chrIV 137609 137883 HC_gene_1696 10 - 137609 137883 -chrIV 138682 139369 MC_gene_1697 1 - 138682 139369 -chrIV 141117 141774 HC_gene_1698 44 - 141117 141774 -chrIV 144168 145546 HC_gene_1699 28 - 144168 145546 -chrIV 145729 147609 HC_gene_1700 46 - 145729 147609 -chrIV 149080 155897 HC_gene_1701 104 - 149080 155897 -chrIV 157991 158736 HC_gene_1702 17 - 157991 158736 -chrIV 160812 163201 HC_gene_1703 50 - 160812 163201 -chrIV 163372 164088 HC_gene_1704 184 - 163372 164088 -chrIV 164193 164816 LC_gene_1705 1 - 164193 164816 -chrIV 164830 167306 HC_gene_1706 8 - 164830 167306 -chrIV 169047 169619 HC_gene_1707 48 - 169047 169619 -chrIV 169771 172215 HC_gene_1708 86 - 169771 172215 -chrIV 173945 174606 HC_gene_1709 487 - 173945 174606 -chrIV 175692 176237 LC_gene_1710 1 - 175692 176237 -chrIV 180966 183040 HC_gene_1711 215 - 180966 183040 -chrIV 187728 188629 HC_gene_1712 38 - 187728 188629 -chrIV 187870 190617 HC_gene_1713 49 - 187870 190617 -chrIV 191898 192396 LC_gene_1714 1 - 191898 192396 -chrIV 192509 192697 MC_gene_1715 1 - 192509 192697 -chrIV 194392 198430 HC_gene_1716 187 - 194392 198430 -chrIV 198501 199768 HC_gene_1717 61 - 198501 199768 -chrIV 201588 202634 HC_gene_1718 55 - 201588 202634 -chrIV 205129 205714 HC_gene_1719 49 - 205129 205714 -chrIV 205249 206423 HC_gene_1720 13 - 205249 206423 -chrIV 205254 211105 HC_gene_1721 12 - 205254 211105 -chrIV 211228 212075 HC_gene_1722 28 - 211228 212075 -chrIV 212373 214388 MC_gene_1723 2 - 212373 214388 -chrIV 214393 215355 MC_gene_1724 1 - 214393 215355 -chrIV 215649 217196 MC_gene_1725 2 - 215649 217196 -chrIV 217086 218150 MC_gene_1726 1 - 217086 218150 -chrIV 218356 219334 HC_gene_1727 337 - 218356 219334 -chrIV 219606 221260 HC_gene_1728 117 - 219606 221260 -chrIV 221490 221820 HC_gene_1729 9401 - 221490 221820 -chrIV 226725 227096 MC_gene_1730 1 - 226725 227096 -chrIV 228686 228887 HC_gene_1731 2 - 228686 228887 -chrIV 229120 229461 MC_gene_1732 1 - 229120 229461 -chrIV 230553 232221 MC_gene_1733 1 - 230553 232221 -chrIV 232207 233775 MC_gene_1734 1 - 232207 233775 -chrIV 233977 234123 HC_gene_1735 1 - 233977 234123 -chrIV 234617 235801 LC_gene_1736 1 - 234617 235801 -chrIV 235930 238706 HC_gene_1737 949 - 235930 238706 -chrIV 238900 239752 HC_gene_1738 580 - 238900 239752 -chrIV 239392 239799 HC_gene_1739 7 - 239392 239799 -chrIV 241122 242068 HC_gene_1740 2 - 241122 242068 -chrIV 244930 245609 HC_gene_1741 270 - 244930 245609 -chrIV 245809 246154 LC_gene_1742 1 - 245809 246154 -chrIV 246526 247785 HC_gene_1743 44 - 246526 247785 -chrIV 248238 248872 LC_gene_1744 1 - 248238 248872 -chrIV 248928 251113 LC_gene_1745 1 - 248928 251113 -chrIV 253901 255333 HC_gene_1746 54 - 253901 255333 -chrIV 255559 256379 LC_gene_1747 1 - 255559 256379 -chrIV 256511 258618 HC_gene_1748 13 - 256511 258618 -chrIV 263147 264180 HC_gene_1749 146 - 263147 264180 -chrIV 264321 267544 HC_gene_1750 137 - 264321 267544 -chrIV 267673 267860 MC_gene_1751 1 - 267673 267860 -chrIV 268144 268789 LC_gene_1752 1 - 268144 268789 -chrIV 268997 269451 LC_gene_1753 1 - 268997 269451 -chrIV 269971 271966 HC_gene_1754 4 - 269971 271966 -chrIV 273285 274896 HC_gene_1755 4 - 273285 274896 -chrIV 274926 276645 HC_gene_1756 55 - 274926 276645 -chrIV 280162 281862 HC_gene_1757 10 - 280162 281862 -chrIV 282043 283213 HC_gene_1758 452 - 282043 283213 -chrIV 284438 285176 HC_gene_1759 39 - 284438 285176 -chrIV 285292 286728 HC_gene_1760 295 - 285292 286728 -chrIV 289757 290353 LC_gene_1761 1 - 289757 290353 -chrIV 292029 292476 LC_gene_1762 1 - 292029 292476 -chrIV 293288 294854 HC_gene_1763 17 - 293288 294854 -chrIV 294821 296512 HC_gene_1764 23 - 294821 296512 -chrIV 298261 301258 HC_gene_1765 46 - 298261 301258 -chrIV 301397 302137 LC_gene_1766 1 - 301397 302137 -chrIV 302215 302727 HC_gene_1767 202 - 302215 302727 -chrIV 304009 304854 MC_gene_1768 1 - 304009 304854 -chrIV 306106 306503 LC_gene_1769 1 - 306106 306503 -chrIV 306548 307808 HC_gene_1770 2129 - 306548 307808 -chrIV 309691 310189 HC_gene_1771 2945 - 309691 310189 -chrIV 310469 312656 HC_gene_1772 13 - 310469 312656 -chrIV 312826 314776 HC_gene_1773 9 - 312826 314776 -chrIV 315271 316445 HC_gene_1774 248 - 315271 316445 -chrIV 316904 320307 MC_gene_1775 2 - 316904 320307 -chrIV 320406 321488 HC_gene_1776 85 - 320406 321488 -chrIV 322993 323633 HC_gene_1777 77 - 322993 323633 -chrIV 323644 326222 HC_gene_1778 37 - 323644 326222 -chrIV 329747 330872 HC_gene_1779 385 - 329747 330872 -chrIV 332995 333944 HC_gene_1780 23 - 332995 333944 -chrIV 333975 334607 HC_gene_1781 444 - 333975 334607 -chrIV 335391 336035 LC_gene_1782 1 - 335391 336035 -chrIV 336053 337297 HC_gene_1783 112 - 336053 337297 -chrIV 338025 340236 HC_gene_1784 34 - 338025 340236 -chrIV 340458 341240 HC_gene_1785 3718 - 340458 341240 -chrIV 343969 345067 HC_gene_1786 18 - 343969 345067 -chrIV 345261 346258 LC_gene_1787 1 - 345261 346258 -chrIV 355425 356909 HC_gene_1788 3372 - 355425 356909 -chrIV 358601 358882 MC_gene_1789 1 - 358601 358882 -chrIV 359745 361363 HC_gene_1790 49 - 359745 361363 -chrIV 361508 362455 HC_gene_1791 191 - 361508 362455 -chrIV 362398 363603 HC_gene_1792 245 - 362398 363603 -chrIV 364851 365714 HC_gene_1793 16 - 364851 365714 -chrIV 365816 366172 HC_gene_1794 8 - 365816 366172 -chrIV 366621 368262 HC_gene_1795 164 - 366621 368262 -chrIV 371583 372003 HC_gene_1796 1 - 371583 372003 -chrIV 372573 373745 HC_gene_1797 44 - 372573 373745 -chrIV 373889 376527 HC_gene_1798 47 - 373889 376527 -chrIV 376635 378506 HC_gene_1799 17 - 376635 378506 -chrIV 378748 381466 HC_gene_1800 100 - 378748 381466 -chrIV 381847 385766 HC_gene_1801 18 - 381847 385766 -chrIV 387175 388886 HC_gene_1802 12 - 387175 388886 -chrIV 389018 392342 HC_gene_1803 13 - 389018 392342 -chrIV 392456 393952 HC_gene_1804 5 - 392456 393952 -chrIV 398471 399100 MC_gene_1805 1 - 398471 399100 -chrIV 400845 403402 HC_gene_1806 5 - 400845 403402 -chrIV 403488 405004 HC_gene_1807 64 - 403488 405004 -chrIV 405231 407403 HC_gene_1808 14 - 405231 407403 -chrIV 408106 409214 HC_gene_1809 2 - 408106 409214 -chrIV 408242 409869 HC_gene_1810 2 - 408242 409869 -chrIV 410511 411030 MC_gene_1811 1 - 410511 411030 -chrIV 410676 411590 MC_gene_1812 2 - 410676 411590 -chrIV 413213 413577 MC_gene_1813 1 - 413213 413577 -chrIV 413814 414790 MC_gene_1814 1 - 413814 414790 -chrIV 414988 416804 HC_gene_1815 207 - 414988 416804 -chrIV 417464 421728 HC_gene_1816 59 - 417464 421728 -chrIV 422577 423921 HC_gene_1817 51 - 422577 423921 -chrIV 425744 426988 HC_gene_1818 318 - 425744 426988 -chrIV 428475 428733 HC_gene_1819 4 - 428475 428733 -chrIV 430819 431535 HC_gene_1820 196 - 430819 431535 -chrIV 430920 432014 HC_gene_1821 16 - 430920 432014 -chrIV 432994 433323 MC_gene_1822 1 - 432994 433323 -chrIV 433440 434123 MC_gene_1823 1 - 433440 434123 -chrIV 434471 434885 LC_gene_1824 1 - 434471 434885 -chrIV 439328 439859 LC_gene_1825 1 - 439328 439859 -chrIV 440795 442350 HC_gene_1826 125 - 440795 442350 -chrIV 443646 444191 HC_gene_1827 8 - 443646 444191 -chrIV 445511 446114 MC_gene_1828 1 - 445511 446114 -chrIV 446624 447619 HC_gene_1829 85 - 446624 447619 -chrIV 448630 449084 LC_gene_1830 1 - 448630 449084 -chrIV 449308 449565 MC_gene_1831 1 - 449308 449565 -chrIV 450103 452683 HC_gene_1832 54 - 450103 452683 -chrIV 453975 454728 LC_gene_1833 1 - 453975 454728 -chrIV 454994 455645 MC_gene_1834 1 - 454994 455645 -chrIV 456622 458221 HC_gene_1835 31 - 456622 458221 -chrIV 458452 461344 HC_gene_1836 54 - 458452 461344 -chrIV 461279 462408 HC_gene_1837 9 - 461279 462408 -chrIV 462623 464972 HC_gene_1838 6 - 462623 464972 -chrIV 469871 470688 LC_gene_1839 1 - 469871 470688 -chrIV 470790 471530 HC_gene_1840 4 - 470790 471530 -chrIV 473764 474902 LC_gene_1841 1 - 473764 474902 -chrIV 476167 476828 LC_gene_1842 1 - 476167 476828 -chrIV 478364 478775 HC_gene_1843 217 - 478364 478775 -chrIV 478943 482268 HC_gene_1844 15 - 478943 482268 -chrIV 482504 483859 HC_gene_1845 1 - 482504 483859 -chrIV 483984 485383 HC_gene_1846 100 - 483984 485383 -chrIV 485327 486527 HC_gene_1847 35 - 485327 486527 -chrIV 487965 489210 HC_gene_1848 32 - 487965 489210 -chrIV 489399 490934 MC_gene_1849 1 - 489399 490934 -chrIV 492342 494419 HC_gene_1850 34 - 492342 494419 -chrIV 494560 497431 HC_gene_1851 21 - 494560 497431 -chrIV 497410 501524 HC_gene_1852 61 - 497410 501524 -chrIV 501611 503282 HC_gene_1853 9 - 501611 503282 -chrIV 503944 504755 HC_gene_1854 787 - 503944 504755 -chrIV 505193 505734 MC_gene_1855 1 - 505193 505734 -chrIV 506376 507166 HC_gene_1856 3 - 506376 507166 -chrIV 509439 512753 HC_gene_1857 27 - 509439 512753 -chrIV 513690 518730 MC_gene_1858 1 - 513690 518730 -chrIV 519389 520212 LC_gene_1859 1 - 519389 520212 -chrIV 520212 520616 MC_gene_1860 1 - 520212 520616 -chrIV 521136 521458 MC_gene_1861 1 - 521136 521458 -chrIV 523080 524767 HC_gene_1862 37 - 523080 524767 -chrIV 527279 533375 MC_gene_1863 1 - 527279 533375 -chrIV 535068 538615 MC_gene_1864 1 - 535068 538615 -chrIV 538680 539576 MC_gene_1865 1 - 538680 539576 -chrIV 540507 541414 HC_gene_1866 10 - 540507 541414 -chrIV 541135 542311 HC_gene_1867 9 - 541135 542311 -chrIV 542547 543567 HC_gene_1868 41 - 542547 543567 -chrIV 544739 545766 HC_gene_1869 12 - 544739 545766 -chrIV 547677 548466 HC_gene_1870 235 - 547677 548466 -chrIV 548677 550671 HC_gene_1871 126 - 548677 550671 -chrIV 553226 553793 LC_gene_1872 1 - 553226 553793 -chrIV 555636 556503 HC_gene_1873 7714 - 555636 556503 -chrIV 556993 558107 HC_gene_1874 118 - 556993 558107 -chrIV 558267 560780 HC_gene_1875 39 - 558267 560780 -chrIV 560951 562698 HC_gene_1876 114 - 560951 562698 -chrIV 563729 564168 MC_gene_1877 1 - 563729 564168 -chrIV 564973 565699 HC_gene_1878 307 - 564973 565699 -chrIV 565653 567368 LC_gene_1879 1 - 565653 567368 -chrIV 567545 568736 MC_gene_1880 2 - 567545 568736 -chrIV 569128 569790 HC_gene_1881 82 - 569128 569790 -chrIV 574990 575820 HC_gene_1882 2 - 574990 575820 -chrIV 576277 578087 LC_gene_1883 1 - 576277 578087 -chrIV 578325 579116 HC_gene_1884 1 - 578325 579116 -chrIV 581793 582640 HC_gene_1885 21 - 581793 582640 -chrIV 582736 583528 HC_gene_1886 67 - 582736 583528 -chrIV 584632 587783 HC_gene_1887 9 - 584632 587783 -chrIV 587943 588558 MC_gene_1888 2 - 587943 588558 -chrIV 588714 589470 HC_gene_1889 490 - 588714 589470 -chrIV 589685 591471 HC_gene_1890 316 - 589685 591471 -chrIV 592594 593047 HC_gene_1891 19 - 592594 593047 -chrIV 593106 593470 HC_gene_1892 46 - 593106 593470 -chrIV 595831 596775 LC_gene_1893 1 - 595831 596775 -chrIV 598401 599603 HC_gene_1894 4 - 598401 599603 -chrIV 600318 601018 MC_gene_1895 1 - 600318 601018 -chrIV 602036 602900 HC_gene_1896 33 - 602036 602900 -chrIV 602632 602994 HC_gene_1897 2 - 602632 602994 -chrIV 603028 603251 HC_gene_1898 1 - 603028 603251 -chrIV 603377 603839 HC_gene_1899 149 - 603377 603839 -chrIV 603919 604534 MC_gene_1900 1 - 603919 604534 -chrIV 607068 607669 HC_gene_1901 16 - 607068 607669 -chrIV 608154 610168 HC_gene_1902 2 - 608154 610168 -chrIV 611033 611580 LC_gene_1903 1 - 611033 611580 -chrIV 613159 614030 HC_gene_1904 106 - 613159 614030 -chrIV 614198 616260 HC_gene_1905 64 - 614198 616260 -chrIV 616730 617227 HC_gene_1906 1342 - 616730 617227 -chrIV 617375 618336 HC_gene_1907 171 - 617375 618336 -chrIV 618305 619847 HC_gene_1908 17 - 618305 619847 -chrIV 619847 620036 MC_gene_1909 1 - 619847 620036 -chrIV 620152 621698 HC_gene_1910 11 - 620152 621698 -chrIV 624724 626057 HC_gene_1911 37 - 624724 626057 -chrIV 626372 628592 HC_gene_1912 162 - 626372 628592 -chrIV 629323 630654 MC_gene_1913 1 - 629323 630654 -chrIV 630585 631301 MC_gene_1914 1 - 630585 631301 -chrIV 636484 636793 LC_gene_1915 1 - 636484 636793 -chrIV 640060 643931 HC_gene_1916 11 - 640060 643931 -chrIV 643935 644969 HC_gene_1917 241 - 643935 644969 -chrIV 645530 651167 LC_gene_1918 1 - 645530 651167 -chrIV 652106 652525 HC_gene_1919 10 - 652106 652525 -chrIV 652618 653399 HC_gene_1920 17 - 652618 653399 -chrIV 654544 654883 HC_gene_1921 52 - 654544 654883 -chrIV 655562 657495 HC_gene_1922 80 - 655562 657495 -chrIV 657672 658116 LC_gene_1923 1 - 657672 658116 -chrIV 661069 664960 HC_gene_1924 1 - 661069 664960 -chrIV 665121 666822 HC_gene_1925 31 - 665121 666822 -chrIV 667576 667868 LC_gene_1926 1 - 667576 667868 -chrIV 668665 671050 HC_gene_1927 5 - 668665 671050 -chrIV 673345 675884 MC_gene_1928 2 - 673345 675884 -chrIV 677778 680263 HC_gene_1929 28 - 677778 680263 -chrIV 680417 681713 HC_gene_1930 31 - 680417 681713 -chrIV 682060 682569 MC_gene_1931 1 - 682060 682569 -chrIV 682598 683617 HC_gene_1932 56 - 682598 683617 -chrIV 683732 685669 HC_gene_1933 35 - 683732 685669 -chrIV 687502 687858 MC_gene_1934 1 - 687502 687858 -chrIV 690250 690489 MC_gene_1935 1 - 690250 690489 -chrIV 691271 693235 HC_gene_1936 95 - 691271 693235 -chrIV 693532 694172 LC_gene_1937 1 - 693532 694172 -chrIV 697895 699509 HC_gene_1938 7 - 697895 699509 -chrIV 700158 702709 HC_gene_1939 10 - 700158 702709 -chrIV 703383 704124 HC_gene_1940 27 - 703383 704124 -chrIV 713059 715426 HC_gene_1941 287 - 713059 715426 -chrIV 715493 716651 HC_gene_1942 10 - 715493 716651 -chrIV 716712 718560 HC_gene_1943 2 - 716712 718560 -chrIV 718596 720425 HC_gene_1944 9 - 718596 720425 -chrIV 720790 721847 HC_gene_1945 1399 - 720790 721847 -chrIV 722911 727595 HC_gene_1946 45 - 722911 727595 -chrIV 729777 730256 LC_gene_1947 1 - 729777 730256 -chrIV 732975 733930 HC_gene_1948 209 - 732975 733930 -chrIV 734698 738602 HC_gene_1949 14 - 734698 738602 -chrIV 739633 740046 HC_gene_1950 3 - 739633 740046 -chrIV 740344 741831 HC_gene_1951 26 - 740344 741831 -chrIV 741870 744021 HC_gene_1952 19 - 741870 744021 -chrIV 743920 746241 HC_gene_1953 62 - 743920 746241 -chrIV 748339 748921 MC_gene_1954 1 - 748339 748921 -chrIV 748427 750914 MC_gene_1955 1 - 748427 750914 -chrIV 753395 755144 HC_gene_1956 164 - 753395 755144 -chrIV 763902 765247 HC_gene_1957 106 - 763902 765247 -chrIV 766632 768092 HC_gene_1958 73 - 766632 768092 -chrIV 768389 769038 HC_gene_1959 5319 - 768389 769038 -chrIV 769740 770254 MC_gene_1960 2 - 769740 770254 -chrIV 770253 771410 LC_gene_1961 1 - 770253 771410 -chrIV 778807 779005 LC_gene_1962 1 - 778807 779005 -chrIV 780176 781233 HC_gene_1963 78 - 780176 781233 -chrIV 781864 784258 HC_gene_1964 20 - 781864 784258 -chrIV 786207 789295 HC_gene_1965 5 - 786207 789295 -chrIV 791824 794256 HC_gene_1966 34 - 791824 794256 -chrIV 795993 802410 HC_gene_1967 72 - 795993 802410 -chrIV 803072 803890 MC_gene_1968 1 - 803072 803890 -chrIV 806486 807788 MC_gene_1969 1 - 806486 807788 -chrIV 807744 808011 MC_gene_1970 1 - 807744 808011 -chrIV 810414 811669 HC_gene_1971 19 - 810414 811669 -chrIV 811849 812162 LC_gene_1972 1 - 811849 812162 -chrIV 812998 814200 HC_gene_1973 89 - 812998 814200 -chrIV 816062 816778 LC_gene_1974 1 - 816062 816778 -chrIV 817388 817726 MC_gene_1975 1 - 817388 817726 -chrIV 818580 819192 HC_gene_1976 56 - 818580 819192 -chrIV 819643 820973 MC_gene_1977 1 - 819643 820973 -chrIV 825721 827368 HC_gene_1978 16 - 825721 827368 -chrIV 828916 829369 MC_gene_1979 1 - 828916 829369 -chrIV 829094 829637 MC_gene_1980 1 - 829094 829637 -chrIV 830470 831543 HC_gene_1981 85 - 830470 831543 -chrIV 831731 832576 HC_gene_1982 18 - 831731 832576 -chrIV 832739 835709 HC_gene_1983 38 - 832739 835709 -chrIV 840318 842020 HC_gene_1984 259 - 840318 842020 -chrIV 843474 844935 HC_gene_1985 22 - 843474 844935 -chrIV 845799 847970 HC_gene_1986 111 - 845799 847970 -chrIV 850181 851000 HC_gene_1987 97 - 850181 851000 -chrIV 852494 853987 HC_gene_1988 17 - 852494 853987 -chrIV 854126 856159 HC_gene_1989 22 - 854126 856159 -chrIV 856763 857985 HC_gene_1990 26 - 856763 857985 -chrIV 861184 861521 MC_gene_1991 1 - 861184 861521 -chrIV 864816 867612 HC_gene_1992 11 - 864816 867612 -chrIV 871603 872481 MC_gene_1993 1 - 871603 872481 -chrIV 878337 880272 MC_gene_1994 1 - 878337 880272 -chrIV 886432 886893 LC_gene_1995 1 - 886432 886893 -chrIV 886918 887900 MC_gene_1996 1 - 886918 887900 -chrIV 892006 892442 MC_gene_1997 2 - 892006 892442 -chrIV 892652 893367 MC_gene_1998 1 - 892652 893367 -chrIV 892732 893516 MC_gene_1999 1 - 892732 893516 -chrIV 899477 903538 HC_gene_2000 1 - 899477 903538 -chrIV 903657 904061 HC_gene_2001 6 - 903657 904061 -chrIV 905251 907088 HC_gene_2002 12 - 905251 907088 -chrIV 908194 908948 MC_gene_2003 1 - 908194 908948 -chrIV 908336 909376 MC_gene_2004 1 - 908336 909376 -chrIV 908497 909488 MC_gene_2005 1 - 908497 909488 -chrIV 909971 911379 HC_gene_2006 4 - 909971 911379 -chrIV 911396 911831 HC_gene_2007 3 - 911396 911831 -chrIV 912395 913750 HC_gene_2008 5 - 912395 913750 -chrIV 913778 914121 MC_gene_2009 1 - 913778 914121 -chrIV 914185 914747 HC_gene_2010 2755 - 914185 914747 -chrIV 914785 915583 MC_gene_2011 1 - 914785 915583 -chrIV 915960 916309 HC_gene_2012 16 - 915960 916309 -chrIV 921857 923958 HC_gene_2013 14 - 921857 923958 -chrIV 924158 924515 HC_gene_2014 42 - 924158 924515 -chrIV 926047 926936 HC_gene_2015 57 - 926047 926936 -chrIV 929321 930630 HC_gene_2016 1122 - 929321 930630 -chrIV 933224 933534 HC_gene_2017 1 - 933224 933534 -chrIV 933561 934896 MC_gene_2018 1 - 933561 934896 -chrIV 935120 936324 HC_gene_2019 73 - 935120 936324 -chrIV 937544 940846 HC_gene_2020 108 - 937544 940846 -chrIV 940978 943446 HC_gene_2021 7 - 940978 943446 -chrIV 943554 945173 HC_gene_2022 13 - 943554 945173 -chrIV 946870 948523 MC_gene_2023 1 - 946870 948523 -chrIV 948464 950313 HC_gene_2024 8 - 948464 950313 -chrIV 954035 954849 MC_gene_2025 2 - 954035 954849 -chrIV 954788 955527 MC_gene_2026 2 - 954788 955527 -chrIV 956604 957499 LC_gene_2027 1 - 956604 957499 -chrIV 957686 958398 HC_gene_2028 93 - 957686 958398 -chrIV 958414 960115 HC_gene_2029 20 - 958414 960115 -chrIV 959999 962185 LC_gene_2030 1 - 959999 962185 -chrIV 963335 963854 MC_gene_2031 1 - 963335 963854 -chrIV 963899 964725 HC_gene_2032 12 - 963899 964725 -chrIV 965404 967868 HC_gene_2033 11 - 965404 967868 -chrIV 967991 971483 HC_gene_2034 35 - 967991 971483 -chrIV 971694 974269 HC_gene_2035 69 - 971694 974269 -chrIV 974294 975995 HC_gene_2036 24 - 974294 975995 -chrIV 976376 977267 HC_gene_2037 68 - 976376 977267 -chrIV 977393 979241 HC_gene_2038 77 - 977393 979241 -chrIV 980107 980831 HC_gene_2039 32 - 980107 980831 -chrIV 981312 982729 LC_gene_2040 1 - 981312 982729 -chrIV 987179 990240 MC_gene_2041 1 - 987179 990240 -chrIV 994081 998392 HC_gene_2042 46 - 994081 998392 -chrIV 999962 1002240 HC_gene_2043 21 - 999962 1002240 -chrIV 1002181 1003749 HC_gene_2044 69 - 1002181 1003749 -chrIV 1004505 1005205 HC_gene_2045 4 - 1004505 1005205 -chrIV 1006449 1008540 LC_gene_2046 1 - 1006449 1008540 -chrIV 1010785 1011503 MC_gene_2047 1 - 1010785 1011503 -chrIV 1012984 1013685 HC_gene_2048 525 - 1012984 1013685 -chrIV 1014119 1015860 HC_gene_2049 133 - 1014119 1015860 -chrIV 1015881 1016712 LC_gene_2050 1 - 1015881 1016712 -chrIV 1018264 1019116 HC_gene_2051 1 - 1018264 1019116 -chrIV 1019325 1020096 LC_gene_2052 1 - 1019325 1020096 -chrIV 1020363 1021729 LC_gene_2053 1 - 1020363 1021729 -chrIV 1021781 1022436 HC_gene_2054 17 - 1021781 1022436 -chrIV 1023276 1024762 HC_gene_2055 13 - 1023276 1024762 -chrIV 1024898 1025825 HC_gene_2056 6 - 1024898 1025825 -chrIV 1026952 1029657 HC_gene_2057 1 - 1026952 1029657 -chrIV 1027233 1030170 HC_gene_2058 2 - 1027233 1030170 -chrIV 1029197 1030275 HC_gene_2059 2 - 1029197 1030275 -chrIV 1030239 1031701 HC_gene_2060 98 - 1030239 1031701 -chrIV 1031738 1032068 MC_gene_2061 1 - 1031738 1032068 -chrIV 1035142 1035791 HC_gene_2062 62 - 1035142 1035791 -chrIV 1038071 1039528 HC_gene_2063 59 - 1038071 1039528 -chrIV 1042579 1045144 HC_gene_2064 61 - 1042579 1045144 -chrIV 1045389 1047583 HC_gene_2065 43 - 1045389 1047583 -chrIV 1049353 1050221 HC_gene_2066 2 - 1049353 1050221 -chrIV 1050403 1052262 HC_gene_2067 71 - 1050403 1052262 -chrIV 1052461 1054910 HC_gene_2068 25 - 1052461 1054910 -chrIV 1054828 1055831 MC_gene_2069 1 - 1054828 1055831 -chrIV 1057992 1058933 HC_gene_2070 288 - 1057992 1058933 -chrIV 1061199 1062866 HC_gene_2071 39 - 1061199 1062866 -chrIV 1066950 1067468 LC_gene_2072 1 - 1066950 1067468 -chrIV 1068587 1071704 MC_gene_2073 3 - 1068587 1071704 -chrIV 1071801 1072574 HC_gene_2074 584 - 1071801 1072574 -chrIV 1072665 1073481 HC_gene_2075 49 - 1072665 1073481 -chrIV 1073394 1075227 HC_gene_2076 18 - 1073394 1075227 -chrIV 1075771 1077111 LC_gene_2077 1 - 1075771 1077111 -chrIV 1077449 1078489 HC_gene_2078 87 - 1077449 1078489 -chrIV 1078587 1080249 HC_gene_2079 134 - 1078587 1080249 -chrIV 1080920 1084595 HC_gene_2080 11 - 1080920 1084595 -chrIV 1089017 1092547 HC_gene_2081 26 - 1089017 1092547 -chrIV 1092663 1093588 HC_gene_2082 17 - 1092663 1093588 -chrIV 1095651 1096563 MC_gene_2083 1 - 1095651 1096563 -chrIV 1101130 1101858 LC_gene_2084 1 - 1101130 1101858 -chrIV 1102053 1103553 HC_gene_2085 2 - 1102053 1103553 -chrIV 1103946 1105875 HC_gene_2086 30 - 1103946 1105875 -chrIV 1105998 1106421 HC_gene_2087 8 - 1105998 1106421 -chrIV 1108095 1108522 HC_gene_2088 179 - 1108095 1108522 -chrIV 1110285 1110584 MC_gene_2089 1 - 1110285 1110584 -chrIV 1111776 1112335 HC_gene_2090 638 - 1111776 1112335 -chrIV 1112279 1114057 HC_gene_2091 18 - 1112279 1114057 -chrIV 1114249 1116717 HC_gene_2092 76 - 1114249 1116717 -chrIV 1120463 1125112 HC_gene_2093 4 - 1120463 1125112 -chrIV 1125239 1126086 HC_gene_2094 304 - 1125239 1126086 -chrIV 1126187 1127618 HC_gene_2095 41 - 1126187 1127618 -chrIV 1129516 1130819 LC_gene_2096 1 - 1129516 1130819 -chrIV 1130789 1131184 HC_gene_2097 3 - 1130789 1131184 -chrIV 1133042 1135466 HC_gene_2098 17 - 1133042 1135466 -chrIV 1137249 1139859 LC_gene_2099 1 - 1137249 1139859 -chrIV 1144826 1145619 LC_gene_2100 1 - 1144826 1145619 -chrIV 1147213 1149526 HC_gene_2101 9 - 1147213 1149526 -chrIV 1149857 1150561 HC_gene_2102 185 - 1149857 1150561 -chrIV 1151009 1151477 LC_gene_2103 1 - 1151009 1151477 -chrIV 1151550 1153648 HC_gene_2104 448 - 1151550 1153648 -chrIV 1154052 1156234 HC_gene_2105 280 - 1154052 1156234 -chrIV 1156784 1159251 MC_gene_2106 2 - 1156784 1159251 -chrIV 1159266 1161821 MC_gene_2107 3 - 1159266 1161821 -chrIV 1159459 1162632 MC_gene_2108 1 - 1159459 1162632 -chrIV 1162655 1164693 HC_gene_2109 3282 - 1162655 1164693 -chrIV 1164662 1165009 HC_gene_2110 1 - 1164662 1165009 -chrIV 1165848 1166298 MC_gene_2111 1 - 1165848 1166298 -chrIV 1166920 1168817 HC_gene_2112 460 - 1166920 1168817 -chrIV 1170035 1172019 HC_gene_2113 24 - 1170035 1172019 -chrIV 1172266 1174273 HC_gene_2114 34 - 1172266 1174273 -chrIV 1174467 1174752 MC_gene_2115 1 - 1174467 1174752 -chrIV 1174587 1175030 MC_gene_2116 1 - 1174587 1175030 -chrIV 1175214 1175645 LC_gene_2117 1 - 1175214 1175645 -chrIV 1175997 1178203 HC_gene_2118 11 - 1175997 1178203 -chrIV 1182574 1183490 HC_gene_2119 3 - 1182574 1183490 -chrIV 1189126 1189721 HC_gene_2120 187 - 1189126 1189721 -chrIV 1191750 1195200 HC_gene_2121 15 - 1191750 1195200 -chrIV 1195126 1196290 HC_gene_2122 175 - 1195126 1196290 -chrIV 1196433 1198808 HC_gene_2123 6 - 1196433 1198808 -chrIV 1201968 1206750 HC_gene_2124 359 - 1201968 1206750 -chrIV 1212420 1212900 MC_gene_2125 1 - 1212420 1212900 -chrIV 1214908 1217604 HC_gene_2126 8 - 1214908 1217604 -chrIV 1217655 1219125 HC_gene_2127 34 - 1217655 1219125 -chrIV 1220967 1222412 HC_gene_2128 170 - 1220967 1222412 -chrIV 1223392 1223739 HC_gene_2129 7 - 1223392 1223739 -chrIV 1225105 1226553 HC_gene_2130 24 - 1225105 1226553 -chrIV 1226608 1228295 LC_gene_2131 1 - 1226608 1228295 -chrIV 1229138 1229628 HC_gene_2132 385 - 1229138 1229628 -chrIV 1233141 1233754 HC_gene_2133 146 - 1233141 1233754 -chrIV 1234039 1236200 HC_gene_2134 5 - 1234039 1236200 -chrIV 1236816 1238046 LC_gene_2135 1 - 1236816 1238046 -chrIV 1238098 1239082 HC_gene_2136 76 - 1238098 1239082 -chrIV 1239347 1239847 MC_gene_2137 1 - 1239347 1239847 -chrIV 1239883 1240672 HC_gene_2138 52 - 1239883 1240672 -chrIV 1241039 1242537 HC_gene_2139 138 - 1241039 1242537 -chrIV 1248011 1249916 HC_gene_2140 15 - 1248011 1249916 -chrIV 1250889 1251634 LC_gene_2141 1 - 1250889 1251634 -chrIV 1254886 1256876 HC_gene_2142 34 - 1254886 1256876 -chrIV 1257275 1258483 HC_gene_2143 57 - 1257275 1258483 -chrIV 1259759 1260169 HC_gene_2144 8 - 1259759 1260169 -chrIV 1260659 1261374 HC_gene_2145 1 - 1260659 1261374 -chrIV 1265980 1266953 HC_gene_2146 239 - 1265980 1266953 -chrIV 1269758 1271616 MC_gene_2147 1 - 1269758 1271616 -chrIV 1272167 1273077 MC_gene_2148 1 - 1272167 1273077 -chrIV 1276217 1277362 HC_gene_2149 186 - 1276217 1277362 -chrIV 1277490 1278506 HC_gene_2150 1 - 1277490 1278506 -chrIV 1279105 1279943 HC_gene_2151 8 - 1279105 1279943 -chrIV 1283996 1288019 HC_gene_2152 3 - 1283996 1288019 -chrIV 1288042 1289135 HC_gene_2153 267 - 1288042 1289135 -chrIV 1290960 1292151 MC_gene_2154 2 - 1290960 1292151 -chrIV 1292298 1293140 HC_gene_2155 86 - 1292298 1293140 -chrIV 1293303 1294444 HC_gene_2156 36 - 1293303 1294444 -chrIV 1295336 1298206 HC_gene_2157 54 - 1295336 1298206 -chrIV 1300268 1301002 MC_gene_2158 1 - 1300268 1301002 -chrIV 1300952 1301270 MC_gene_2159 1 - 1300952 1301270 -chrIV 1302065 1302625 MC_gene_2160 1 - 1302065 1302625 -chrIV 1303042 1303692 LC_gene_2161 1 - 1303042 1303692 -chrIV 1311738 1312565 HC_gene_2162 4 - 1311738 1312565 -chrIV 1315033 1317830 HC_gene_2163 3 - 1315033 1317830 -chrIV 1317855 1319235 HC_gene_2164 26 - 1317855 1319235 -chrIV 1319342 1319866 HC_gene_2165 105 - 1319342 1319866 -chrIV 1321426 1321979 MC_gene_2166 1 - 1321426 1321979 -chrIV 1321917 1322262 MC_gene_2167 1 - 1321917 1322262 -chrIV 1323346 1325319 HC_gene_2168 766 - 1323346 1325319 -chrIV 1325442 1328528 HC_gene_2169 19 - 1325442 1328528 -chrIV 1332818 1333982 HC_gene_2170 59 - 1332818 1333982 -chrIV 1336270 1337124 HC_gene_2171 2 - 1336270 1337124 -chrIV 1338199 1339443 HC_gene_2172 3 - 1338199 1339443 -chrIV 1340544 1342214 HC_gene_2173 9 - 1340544 1342214 -chrIV 1344207 1349992 HC_gene_2174 151 - 1344207 1349992 -chrIV 1353064 1353565 HC_gene_2175 30 - 1353064 1353565 -chrIV 1354699 1355578 HC_gene_2176 2508 - 1354699 1355578 -chrIV 1357392 1358932 HC_gene_2177 9 - 1357392 1358932 -chrIV 1359163 1359414 MC_gene_2178 1 - 1359163 1359414 -chrIV 1359267 1359466 MC_gene_2179 1 - 1359267 1359466 -chrIV 1360958 1362244 HC_gene_2180 48 - 1360958 1362244 -chrIV 1362251 1364162 MC_gene_2181 1 - 1362251 1364162 -chrIV 1363450 1364450 MC_gene_2182 1 - 1363450 1364450 -chrIV 1364851 1365731 HC_gene_2183 81 - 1364851 1365731 -chrIV 1366158 1366844 HC_gene_2184 719 - 1366158 1366844 -chrIV 1379878 1382093 HC_gene_2185 26 - 1379878 1382093 -chrIV 1382208 1383540 HC_gene_2186 38 - 1382208 1383540 -chrIV 1385418 1385785 HC_gene_2187 52 - 1385418 1385785 -chrIV 1393168 1394598 HC_gene_2188 52 - 1393168 1394598 -chrIV 1396791 1398795 HC_gene_2189 134 - 1396791 1398795 -chrIV 1399511 1401301 HC_gene_2190 20 - 1399511 1401301 -chrIV 1402572 1403087 LC_gene_2191 1 - 1402572 1403087 -chrIV 1404206 1405923 HC_gene_2192 43 - 1404206 1405923 -chrIV 1407350 1410193 HC_gene_2193 16 - 1407350 1410193 -chrIV 1410248 1411146 HC_gene_2194 36 - 1410248 1411146 -chrIV 1415125 1417133 HC_gene_2195 19 - 1415125 1417133 -chrIV 1417217 1418318 MC_gene_2196 1 - 1417217 1418318 -chrIV 1418340 1420284 HC_gene_2197 84 - 1418340 1420284 -chrIV 1418439 1420929 HC_gene_2198 63 - 1418439 1420929 -chrIV 1424771 1426705 HC_gene_2199 3 - 1424771 1426705 -chrIV 1427308 1429173 HC_gene_2200 267 - 1427308 1429173 -chrIV 1431663 1434354 HC_gene_2201 9 - 1431663 1434354 -chrIV 1436046 1436666 LC_gene_2202 1 - 1436046 1436666 -chrIV 1437961 1441196 HC_gene_2203 7 - 1437961 1441196 -chrIV 1441209 1443428 HC_gene_2204 121 - 1441209 1443428 -chrIV 1443601 1445543 HC_gene_2205 243 - 1443601 1445543 -chrIV 1445791 1447030 HC_gene_2206 36 - 1445791 1447030 -chrIV 1450104 1450874 HC_gene_2207 3065 - 1450104 1450874 -chrIV 1451047 1452236 MC_gene_2208 1 - 1451047 1452236 -chrIV 1451190 1452451 MC_gene_2209 1 - 1451190 1452451 -chrIV 1453014 1454622 HC_gene_2210 160 - 1453014 1454622 -chrIV 1454832 1455897 HC_gene_2211 21 - 1454832 1455897 -chrIV 1456082 1461573 HC_gene_2212 45 - 1456082 1461573 -chrIV 1461578 1461806 LC_gene_2213 1 - 1461578 1461806 -chrIV 1462180 1465906 HC_gene_2214 19 - 1462180 1465906 -chrIV 1466119 1468489 HC_gene_2215 221 - 1466119 1468489 -chrIV 1469784 1470215 MC_gene_2216 1 - 1469784 1470215 -chrIV 1470387 1470795 HC_gene_2217 192 - 1470387 1470795 -chrIV 1471454 1473075 HC_gene_2218 23 - 1471454 1473075 -chrIV 1474854 1476976 HC_gene_2219 315 - 1474854 1476976 -chrIV 1478224 1480257 MC_gene_2220 1 - 1478224 1480257 -chrIV 1480994 1483490 HC_gene_2221 9 - 1480994 1483490 -chrIV 1485512 1489058 HC_gene_2222 25 - 1485512 1489058 -chrIV 1489259 1489844 HC_gene_2223 18413 - 1489259 1489844 -chrIV 1492299 1493076 HC_gene_2224 46 - 1492299 1493076 -chrIV 1493586 1493988 HC_gene_2225 4 - 1493586 1493988 -chrIV 1495934 1496580 HC_gene_2226 766 - 1495934 1496580 -chrIV 1496671 1497763 HC_gene_2227 58 - 1496671 1497763 -chrIV 1498163 1499168 LC_gene_2228 1 - 1498163 1499168 -chrIV 1499332 1500794 HC_gene_2229 16 - 1499332 1500794 -chrIV 1501194 1502197 HC_gene_2230 92 - 1501194 1502197 -chrIV 1503074 1504926 MC_gene_2231 1 - 1503074 1504926 -chrIV 1504951 1506855 HC_gene_2232 2 - 1504951 1506855 -chrIV 1506933 1507349 LC_gene_2233 1 - 1506933 1507349 -chrIV 1507789 1509794 MC_gene_2234 2 - 1507789 1509794 -chrIV 1513774 1515221 MC_gene_2235 2 - 1513774 1515221 -chrIV 1515733 1516446 HC_gene_2236 2 - 1515733 1516446 -chrIV 1516742 1517759 HC_gene_2237 7 - 1516742 1517759 -chrIV 1516831 1518010 HC_gene_2238 3 - 1516831 1518010 -chrIV 1519463 1520935 HC_gene_2239 31 - 1519463 1520935 -chrIV 1521283 1522354 LC_gene_2240 1 - 1521283 1522354 -chrV 4033 6451 MC_gene_2241 1 + 4033 6451 -chrV 7831 8122 HC_gene_2242 12 + 7831 8122 -chrV 9959 10639 MC_gene_2243 1 + 9959 10639 -chrV 11348 11988 MC_gene_2244 2 + 11348 11988 -chrV 13638 14757 HC_gene_2245 22 + 13638 14757 -chrV 16166 17984 HC_gene_2246 506 + 16166 17984 -chrV 19515 21225 MC_gene_2247 1 + 19515 21225 -chrV 21534 25479 MC_gene_2248 1 + 21534 25479 -chrV 26126 27526 HC_gene_2249 65 + 26126 27526 -chrV 27636 29622 HC_gene_2250 27 + 27636 29622 -chrV 34232 36568 HC_gene_2251 9 + 34232 36568 -chrV 39868 40472 MC_gene_2252 1 + 39868 40472 -chrV 41035 42175 MC_gene_2253 1 + 41035 42175 -chrV 42449 45001 HC_gene_2254 153 + 42449 45001 -chrV 45178 45817 HC_gene_2255 1 + 45178 45817 -chrV 47122 49882 HC_gene_2256 42 + 47122 49882 -chrV 51842 52126 MC_gene_2257 1 + 51842 52126 -chrV 52652 53432 LC_gene_2258 1 + 52652 53432 -chrV 53725 53930 MC_gene_2259 1 + 53725 53930 -chrV 56345 58171 HC_gene_2260 94 + 56345 58171 -chrV 58326 59309 HC_gene_2261 676 + 58326 59309 -chrV 61188 61686 HC_gene_2262 15 + 61188 61686 -chrV 63380 64223 LC_gene_2263 1 + 63380 64223 -chrV 64871 65324 LC_gene_2264 1 + 64871 65324 -chrV 66587 67123 MC_gene_2265 1 + 66587 67123 -chrV 67356 68931 LC_gene_2266 1 + 67356 68931 -chrV 69048 70309 HC_gene_2267 181 + 69048 70309 -chrV 70428 73462 HC_gene_2268 32 + 70428 73462 -chrV 73626 75931 HC_gene_2269 149 + 73626 75931 -chrV 75835 78077 HC_gene_2270 2 + 75835 78077 -chrV 78035 79629 HC_gene_2271 338 + 78035 79629 -chrV 80441 81322 HC_gene_2272 201 + 80441 81322 -chrV 84916 85250 LC_gene_2273 1 + 84916 85250 -chrV 85621 86368 HC_gene_2274 3119 + 85621 86368 -chrV 86884 90037 HC_gene_2275 45 + 86884 90037 -chrV 90220 93991 HC_gene_2276 107 + 90220 93991 -chrV 96093 96949 HC_gene_2277 8 + 96093 96949 -chrV 98072 99665 HC_gene_2278 10 + 98072 99665 -chrV 99684 100365 HC_gene_2279 1 + 99684 100365 -chrV 100705 101510 HC_gene_2280 2795 + 100705 101510 -chrV 101851 102395 HC_gene_2281 1425 + 101851 102395 -chrV 107175 108508 HC_gene_2282 150 + 107175 108508 -chrV 110806 111171 LC_gene_2283 1 + 110806 111171 -chrV 111352 115958 HC_gene_2284 36 + 111352 115958 -chrV 116281 117053 MC_gene_2285 1 + 116281 117053 -chrV 117145 117591 HC_gene_2286 419 + 117145 117591 -chrV 118164 118723 HC_gene_2287 2 + 118164 118723 -chrV 121465 122402 HC_gene_2288 60 + 121465 122402 -chrV 123182 124761 HC_gene_2289 64 + 123182 124761 -chrV 124794 126483 MC_gene_2290 1 + 124794 126483 -chrV 126588 128753 HC_gene_2291 76 + 126588 128753 -chrV 128586 131011 HC_gene_2292 32 + 128586 131011 -chrV 131675 132662 HC_gene_2293 102 + 131675 132662 -chrV 133087 135349 HC_gene_2294 42 + 133087 135349 -chrV 137153 138513 HC_gene_2295 2 + 137153 138513 -chrV 138878 140050 LC_gene_2296 1 + 138878 140050 -chrV 141498 142501 HC_gene_2297 6 + 141498 142501 -chrV 143023 144060 HC_gene_2298 26 + 143023 144060 -chrV 144302 145798 HC_gene_2299 56 + 144302 145798 -chrV 146907 148669 HC_gene_2300 351 + 146907 148669 -chrV 151196 151422 HC_gene_2301 2 + 151196 151422 -chrV 151541 151976 MC_gene_2302 1 + 151541 151976 -chrV 152837 153520 HC_gene_2303 1 + 152837 153520 -chrV 153477 156111 HC_gene_2304 40 + 153477 156111 -chrV 156737 157747 HC_gene_2305 87 + 156737 157747 -chrV 157657 159203 LC_gene_2306 1 + 157657 159203 -chrV 159331 160616 HC_gene_2307 157 + 159331 160616 -chrV 160507 162581 HC_gene_2308 20 + 160507 162581 -chrV 162682 164524 HC_gene_2309 230 + 162682 164524 -chrV 164503 166230 HC_gene_2310 6 + 164503 166230 -chrV 166489 166973 MC_gene_2311 1 + 166489 166973 -chrV 167036 168028 HC_gene_2312 18 + 167036 168028 -chrV 172079 172743 HC_gene_2313 1045 + 172079 172743 -chrV 173497 173721 HC_gene_2314 16 + 173497 173721 -chrV 175192 176168 HC_gene_2315 311 + 175192 176168 -chrV 177772 178597 HC_gene_2316 520 + 177772 178597 -chrV 178799 182395 HC_gene_2317 5 + 178799 182395 -chrV 182567 184332 HC_gene_2318 24 + 182567 184332 -chrV 184517 187033 HC_gene_2319 10 + 184517 187033 -chrV 188263 189461 HC_gene_2320 52 + 188263 189461 -chrV 192400 192691 HC_gene_2321 42 + 192400 192691 -chrV 192844 194323 HC_gene_2322 63 + 192844 194323 -chrV 195156 196693 HC_gene_2323 49 + 195156 196693 -chrV 196935 198646 HC_gene_2324 125 + 196935 198646 -chrV 198775 200978 HC_gene_2325 10 + 198775 200978 -chrV 201049 202151 HC_gene_2326 136 + 201049 202151 -chrV 202158 207129 HC_gene_2327 284 + 202158 207129 -chrV 207362 207618 MC_gene_2328 1 + 207362 207618 -chrV 210478 212466 MC_gene_2329 1 + 210478 212466 -chrV 212398 213295 MC_gene_2330 1 + 212398 213295 -chrV 213427 214445 HC_gene_2331 564 + 213427 214445 -chrV 215013 217957 HC_gene_2332 5 + 215013 217957 -chrV 221805 223390 HC_gene_2333 187 + 221805 223390 -chrV 225865 227204 HC_gene_2334 35 + 225865 227204 -chrV 228377 229376 HC_gene_2335 1 + 228377 229376 -chrV 228631 229577 HC_gene_2336 1 + 228631 229577 -chrV 229711 232249 HC_gene_2337 8 + 229711 232249 -chrV 232378 234904 HC_gene_2338 10 + 232378 234904 -chrV 234905 235655 HC_gene_2339 154 + 234905 235655 -chrV 237478 238108 LC_gene_2340 1 + 237478 238108 -chrV 238647 239459 LC_gene_2341 1 + 238647 239459 -chrV 239601 241698 MC_gene_2342 1 + 239601 241698 -chrV 242490 243707 HC_gene_2343 33 + 242490 243707 -chrV 247145 247590 LC_gene_2344 1 + 247145 247590 -chrV 248511 249556 MC_gene_2345 1 + 248511 249556 -chrV 250001 250414 MC_gene_2346 1 + 250001 250414 -chrV 250632 251666 HC_gene_2347 156 + 250632 251666 -chrV 251708 253926 HC_gene_2348 159 + 251708 253926 -chrV 255394 256153 HC_gene_2349 1 + 255394 256153 -chrV 259466 260669 MC_gene_2350 1 + 259466 260669 -chrV 261715 261977 MC_gene_2351 1 + 261715 261977 -chrV 261950 262667 MC_gene_2352 1 + 261950 262667 -chrV 263521 266144 HC_gene_2353 2 + 263521 266144 -chrV 268977 269425 HC_gene_2354 134 + 268977 269425 -chrV 270691 271616 HC_gene_2355 11 + 270691 271616 -chrV 271734 272224 HC_gene_2356 112 + 271734 272224 -chrV 272461 274468 HC_gene_2357 24 + 272461 274468 -chrV 274426 278312 HC_gene_2358 19 + 274426 278312 -chrV 279848 280916 MC_gene_2359 1 + 279848 280916 -chrV 281271 282571 HC_gene_2360 262 + 281271 282571 -chrV 284477 285190 HC_gene_2361 4 + 284477 285190 -chrV 285053 287442 HC_gene_2362 5 + 285053 287442 -chrV 289340 290994 MC_gene_2363 3 + 289340 290994 -chrV 291774 292643 HC_gene_2364 355 + 291774 292643 -chrV 292966 294939 HC_gene_2365 29 + 292966 294939 -chrV 295359 298151 HC_gene_2366 85 + 295359 298151 -chrV 298727 302162 HC_gene_2367 60 + 298727 302162 -chrV 302788 303346 HC_gene_2368 388 + 302788 303346 -chrV 303481 305962 HC_gene_2369 86 + 303481 305962 -chrV 306303 307316 HC_gene_2370 4306 + 306303 307316 -chrV 307446 308194 HC_gene_2371 2 + 307446 308194 -chrV 307622 308382 HC_gene_2372 207 + 307622 308382 -chrV 309754 311904 MC_gene_2373 1 + 309754 311904 -chrV 313562 313931 HC_gene_2374 3 + 313562 313931 -chrV 314038 314259 MC_gene_2375 1 + 314038 314259 -chrV 315902 316820 MC_gene_2376 1 + 315902 316820 -chrV 316770 316889 MC_gene_2377 1 + 316770 316889 -chrV 318841 319816 HC_gene_2378 73 + 318841 319816 -chrV 319942 322177 HC_gene_2379 72 + 319942 322177 -chrV 322211 324356 HC_gene_2380 207 + 322211 324356 -chrV 324286 325461 LC_gene_2381 1 + 324286 325461 -chrV 326200 327104 LC_gene_2382 1 + 326200 327104 -chrV 327242 327667 HC_gene_2383 27 + 327242 327667 -chrV 328436 330362 HC_gene_2384 181 + 328436 330362 -chrV 330536 332471 HC_gene_2385 12 + 330536 332471 -chrV 332842 333120 HC_gene_2386 1 + 332842 333120 -chrV 336012 336198 HC_gene_2387 1 + 336012 336198 -chrV 336423 337668 MC_gene_2388 1 + 336423 337668 -chrV 337894 339730 HC_gene_2389 195 + 337894 339730 -chrV 342815 343492 HC_gene_2390 196 + 342815 343492 -chrV 343496 343731 MC_gene_2391 1 + 343496 343731 -chrV 344017 344846 LC_gene_2392 1 + 344017 344846 -chrV 347822 348481 MC_gene_2393 1 + 347822 348481 -chrV 348049 348681 MC_gene_2394 1 + 348049 348681 -chrV 349934 351501 HC_gene_2395 72 + 349934 351501 -chrV 351597 353420 HC_gene_2396 4 + 351597 353420 -chrV 353737 354484 MC_gene_2397 1 + 353737 354484 -chrV 355285 358155 HC_gene_2398 3 + 355285 358155 -chrV 358735 359024 LC_gene_2399 1 + 358735 359024 -chrV 359279 360408 HC_gene_2400 200 + 359279 360408 -chrV 361362 362284 MC_gene_2401 1 + 361362 362284 -chrV 362712 363867 HC_gene_2402 48 + 362712 363867 -chrV 363081 364007 HC_gene_2403 2838 + 363081 364007 -chrV 364090 366680 HC_gene_2404 46 + 364090 366680 -chrV 366782 368480 HC_gene_2405 7 + 366782 368480 -chrV 372113 373423 MC_gene_2406 1 + 372113 373423 -chrV 376003 377763 LC_gene_2407 1 + 376003 377763 -chrV 377972 378872 HC_gene_2408 4 + 377972 378872 -chrV 382469 382732 HC_gene_2409 4 + 382469 382732 -chrV 387142 387895 HC_gene_2410 240 + 387142 387895 -chrV 394313 394930 LC_gene_2411 1 + 394313 394930 -chrV 396739 397802 HC_gene_2412 4297 + 396739 397802 -chrV 399487 400969 LC_gene_2413 1 + 399487 400969 -chrV 401107 402106 HC_gene_2414 314 + 401107 402106 -chrV 402151 402833 MC_gene_2415 1 + 402151 402833 -chrV 402343 402839 MC_gene_2416 1 + 402343 402839 -chrV 404624 406814 HC_gene_2417 52 + 404624 406814 -chrV 407147 409235 LC_gene_2418 1 + 407147 409235 -chrV 409699 413013 HC_gene_2419 153 + 409699 413013 -chrV 413249 413985 LC_gene_2420 1 + 413249 413985 -chrV 414462 415884 HC_gene_2421 86 + 414462 415884 -chrV 415856 416598 HC_gene_2422 25 + 415856 416598 -chrV 416755 417279 HC_gene_2423 10 + 416755 417279 -chrV 420141 420987 HC_gene_2424 5 + 420141 420987 -chrV 423568 424456 HC_gene_2425 2471 + 423568 424456 -chrV 424694 425133 HC_gene_2426 119 + 424694 425133 -chrV 425613 426294 LC_gene_2427 1 + 425613 426294 -chrV 430563 431140 MC_gene_2428 2 + 430563 431140 -chrV 432424 434380 HC_gene_2429 621 + 432424 434380 -chrV 434794 435280 LC_gene_2430 1 + 434794 435280 -chrV 435985 436427 LC_gene_2431 1 + 435985 436427 -chrV 436755 437191 LC_gene_2432 1 + 436755 437191 -chrV 437993 438634 MC_gene_2433 1 + 437993 438634 -chrV 439537 441297 HC_gene_2434 111 + 439537 441297 -chrV 440262 441372 HC_gene_2435 83 + 440262 441372 -chrV 441986 442507 MC_gene_2436 3 + 441986 442507 -chrV 442601 443059 HC_gene_2437 6 + 442601 443059 -chrV 449289 450175 HC_gene_2438 199 + 449289 450175 -chrV 451505 455161 HC_gene_2439 125 + 451505 455161 -chrV 456259 457768 HC_gene_2440 39 + 456259 457768 -chrV 457939 460479 MC_gene_2441 2 + 457939 460479 -chrV 460536 461089 MC_gene_2442 1 + 460536 461089 -chrV 461459 462348 MC_gene_2443 1 + 461459 462348 -chrV 462395 462951 HC_gene_2444 281 + 462395 462951 -chrV 465112 466341 HC_gene_2445 329 + 465112 466341 -chrV 467724 468981 HC_gene_2446 88 + 467724 468981 -chrV 469087 469689 MC_gene_2447 1 + 469087 469689 -chrV 475014 476296 HC_gene_2448 72 + 475014 476296 -chrV 482995 483336 MC_gene_2449 1 + 482995 483336 -chrV 484326 484753 MC_gene_2450 1 + 484326 484753 -chrV 484770 487229 HC_gene_2451 5 + 484770 487229 -chrV 487516 488144 MC_gene_2452 1 + 487516 488144 -chrV 490079 491526 HC_gene_2453 3 + 490079 491526 -chrV 491798 492240 LC_gene_2454 1 + 491798 492240 -chrV 497653 499143 MC_gene_2455 2 + 497653 499143 -chrV 500828 501535 LC_gene_2456 1 + 500828 501535 -chrV 502731 503136 MC_gene_2457 1 + 502731 503136 -chrV 503115 503397 MC_gene_2458 1 + 503115 503397 -chrV 504003 504982 HC_gene_2459 7 + 504003 504982 -chrV 505088 509923 HC_gene_2460 11 + 505088 509923 -chrV 510229 512258 HC_gene_2461 1036 + 510229 512258 -chrV 512442 513445 HC_gene_2462 1 + 512442 513445 -chrV 515492 517650 HC_gene_2463 3 + 515492 517650 -chrV 516883 518038 HC_gene_2464 26 + 516883 518038 -chrV 517827 520941 HC_gene_2465 12 + 517827 520941 -chrV 523086 525979 HC_gene_2466 16 + 523086 525979 -chrV 525949 526996 HC_gene_2467 17 + 525949 526996 -chrV 526965 529690 HC_gene_2468 30 + 526965 529690 -chrV 535847 536186 HC_gene_2469 4 + 535847 536186 -chrV 536298 538455 HC_gene_2470 7 + 536298 538455 -chrV 540722 541576 HC_gene_2471 3 + 540722 541576 -chrV 541646 545173 HC_gene_2472 73 + 541646 545173 -chrV 545201 546591 HC_gene_2473 2081 + 545201 546591 -chrV 546787 548213 HC_gene_2474 977 + 546787 548213 -chrV 548399 549673 MC_gene_2475 1 + 548399 549673 -chrV 548782 549735 MC_gene_2476 1 + 548782 549735 -chrV 552488 553362 HC_gene_2477 62 + 552488 553362 -chrV 554136 556057 HC_gene_2478 4 + 554136 556057 -chrV 556220 557254 MC_gene_2479 1 + 556220 557254 -chrV 556685 557436 MC_gene_2480 1 + 556685 557436 -chrV 559384 560421 HC_gene_2481 5 + 559384 560421 -chrV 560709 561649 LC_gene_2482 1 + 560709 561649 -chrV 562955 563302 MC_gene_2483 1 + 562955 563302 -chrV 563357 563962 LC_gene_2484 1 + 563357 563962 -chrV 565552 566920 MC_gene_2485 1 + 565552 566920 -chrV 567894 568982 HC_gene_2486 6 + 567894 568982 -chrV 569998 570634 LC_gene_2487 1 + 569998 570634 -chrV 571241 576470 LC_gene_2488 1 + 571241 576470 -chrV 196 5942 LC_gene_2489 1 - 196 5942 -chrV 6502 7555 HC_gene_2490 8 - 6502 7555 -chrV 8431 9772 HC_gene_2491 17 - 8431 9772 -chrV 10291 11314 HC_gene_2492 2 - 10291 11314 -chrV 12446 13353 MC_gene_2493 1 - 12446 13353 -chrV 14538 15070 HC_gene_2494 3 - 14538 15070 -chrV 15307 15896 MC_gene_2495 1 - 15307 15896 -chrV 15713 15952 MC_gene_2496 1 - 15713 15952 -chrV 21471 23270 LC_gene_2497 1 - 21471 23270 -chrV 25394 26490 HC_gene_2498 89 - 25394 26490 -chrV 29466 31269 HC_gene_2499 6 - 29466 31269 -chrV 31374 34423 HC_gene_2500 107 - 31374 34423 -chrV 36274 39661 HC_gene_2501 8 - 36274 39661 -chrV 39816 42119 HC_gene_2502 247 - 39816 42119 -chrV 42332 43070 HC_gene_2503 123 - 42332 43070 -chrV 44908 45928 HC_gene_2504 10 - 44908 45928 -chrV 46186 46891 HC_gene_2505 2 - 46186 46891 -chrV 48302 51595 HC_gene_2506 70 - 48302 51595 -chrV 51978 53246 HC_gene_2507 1621 - 51978 53246 -chrV 53789 56171 HC_gene_2508 23 - 53789 56171 -chrV 58829 59282 MC_gene_2509 1 - 58829 59282 -chrV 59511 60903 HC_gene_2510 99 - 59511 60903 -chrV 61055 61761 LC_gene_2511 1 - 61055 61761 -chrV 62137 62484 LC_gene_2512 1 - 62137 62484 -chrV 62789 65189 HC_gene_2513 42 - 62789 65189 -chrV 65308 68895 HC_gene_2514 911 - 65308 68895 -chrV 75759 77492 MC_gene_2515 1 - 75759 77492 -chrV 79524 80067 HC_gene_2516 94 - 79524 80067 -chrV 81242 82728 HC_gene_2517 221 - 81242 82728 -chrV 82965 84698 HC_gene_2518 164 - 82965 84698 -chrV 85438 86293 MC_gene_2519 1 - 85438 86293 -chrV 89252 89991 MC_gene_2520 1 - 89252 89991 -chrV 96490 97862 HC_gene_2521 51 - 96490 97862 -chrV 96738 99434 HC_gene_2522 1 - 96738 99434 -chrV 100234 100499 MC_gene_2523 1 - 100234 100499 -chrV 100607 101510 MC_gene_2524 2 - 100607 101510 -chrV 102310 106188 HC_gene_2525 6 - 102310 106188 -chrV 108370 111113 HC_gene_2526 3 - 108370 111113 -chrV 115805 116296 MC_gene_2527 1 - 115805 116296 -chrV 117146 117583 LC_gene_2528 1 - 117146 117583 -chrV 117644 118119 HC_gene_2529 28 - 117644 118119 -chrV 118506 121312 HC_gene_2530 6 - 118506 121312 -chrV 122328 122960 HC_gene_2531 3175 - 122328 122960 -chrV 122682 122984 HC_gene_2532 21 - 122682 122984 -chrV 123503 124153 MC_gene_2533 1 - 123503 124153 -chrV 124638 126402 HC_gene_2534 20 - 124638 126402 -chrV 130914 131424 LC_gene_2535 1 - 130914 131424 -chrV 132482 132722 HC_gene_2536 5 - 132482 132722 -chrV 132974 135269 LC_gene_2537 1 - 132974 135269 -chrV 135733 136398 HC_gene_2538 2 - 135733 136398 -chrV 137438 138453 LC_gene_2539 1 - 137438 138453 -chrV 138820 140336 HC_gene_2540 2020 - 138820 140336 -chrV 140352 140734 LC_gene_2541 1 - 140352 140734 -chrV 143803 144024 MC_gene_2542 1 - 143803 144024 -chrV 145805 146770 HC_gene_2543 17 - 145805 146770 -chrV 147158 147911 LC_gene_2544 1 - 147158 147911 -chrV 148647 150065 HC_gene_2545 208 - 148647 150065 -chrV 149997 151003 HC_gene_2546 363 - 149997 151003 -chrV 151211 151890 HC_gene_2547 37 - 151211 151890 -chrV 152351 153164 LC_gene_2548 1 - 152351 153164 -chrV 156000 156485 HC_gene_2549 43 - 156000 156485 -chrV 157495 159139 HC_gene_2550 218 - 157495 159139 -chrV 159064 160246 LC_gene_2551 1 - 159064 160246 -chrV 161283 162446 HC_gene_2552 3 - 161283 162446 -chrV 164406 164833 LC_gene_2553 1 - 164406 164833 -chrV 165883 166917 HC_gene_2554 58 - 165883 166917 -chrV 167700 171868 HC_gene_2555 28 - 167700 171868 -chrV 172504 173346 HC_gene_2556 106 - 172504 173346 -chrV 173767 174641 LC_gene_2557 1 - 173767 174641 -chrV 176068 177592 MC_gene_2558 1 - 176068 177592 -chrV 178206 178578 MC_gene_2559 1 - 178206 178578 -chrV 184299 186343 LC_gene_2560 1 - 184299 186343 -chrV 186938 188075 HC_gene_2561 30 - 186938 188075 -chrV 189312 191870 HC_gene_2562 8 - 189312 191870 -chrV 191883 192680 HC_gene_2563 31 - 191883 192680 -chrV 194211 194891 HC_gene_2564 621 - 194211 194891 -chrV 196239 196654 LC_gene_2565 1 - 196239 196654 -chrV 201926 202607 MC_gene_2566 1 - 201926 202607 -chrV 202880 204598 HC_gene_2567 2 - 202880 204598 -chrV 204646 204961 LC_gene_2568 1 - 204646 204961 -chrV 207513 208485 HC_gene_2569 283 - 207513 208485 -chrV 208729 210305 HC_gene_2570 80 - 208729 210305 -chrV 210632 211906 HC_gene_2571 22 - 210632 211906 -chrV 212481 213244 HC_gene_2572 161 - 212481 213244 -chrV 213777 214782 HC_gene_2573 469 - 213777 214782 -chrV 217886 221490 HC_gene_2574 3 - 217886 221490 -chrV 222712 223119 LC_gene_2575 1 - 222712 223119 -chrV 223258 225233 HC_gene_2576 451 - 223258 225233 -chrV 225702 228263 HC_gene_2577 10 - 225702 228263 -chrV 228332 229498 HC_gene_2578 8 - 228332 229498 -chrV 235472 237144 HC_gene_2579 967 - 235472 237144 -chrV 237463 239471 HC_gene_2580 204 - 237463 239471 -chrV 239880 241761 HC_gene_2581 16 - 239880 241761 -chrV 241792 242425 HC_gene_2582 6 - 241792 242425 -chrV 243749 246692 HC_gene_2583 1 - 243749 246692 -chrV 246602 248395 HC_gene_2584 182 - 246602 248395 -chrV 248578 249852 HC_gene_2585 37 - 248578 249852 -chrV 250860 251421 MC_gene_2586 1 - 250860 251421 -chrV 253659 254435 HC_gene_2587 187 - 253659 254435 -chrV 254464 255542 MC_gene_2588 1 - 254464 255542 -chrV 256211 258054 HC_gene_2589 297 - 256211 258054 -chrV 258055 260020 HC_gene_2590 184 - 258055 260020 -chrV 260547 261401 HC_gene_2591 34 - 260547 261401 -chrV 261778 264299 MC_gene_2592 4 - 261778 264299 -chrV 264816 265811 HC_gene_2593 778 - 264816 265811 -chrV 266388 270206 HC_gene_2594 3147 - 266388 270206 -chrV 270431 271170 HC_gene_2595 509 - 270431 271170 -chrV 272085 274412 MC_gene_2596 1 - 272085 274412 -chrV 273805 277778 MC_gene_2597 3 - 273805 277778 -chrV 278233 279667 HC_gene_2598 17 - 278233 279667 -chrV 279758 280743 HC_gene_2599 256 - 279758 280743 -chrV 282182 284313 HC_gene_2600 39 - 282182 284313 -chrV 285111 287183 HC_gene_2601 23 - 285111 287183 -chrV 287569 289342 MC_gene_2602 3 - 287569 289342 -chrV 290830 291551 HC_gene_2603 9 - 290830 291551 -chrV 292949 294831 LC_gene_2604 1 - 292949 294831 -chrV 298011 298246 HC_gene_2605 1 - 298011 298246 -chrV 298765 299220 LC_gene_2606 1 - 298765 299220 -chrV 301740 302350 HC_gene_2607 117 - 301740 302350 -chrV 302644 303172 HC_gene_2608 13 - 302644 303172 -chrV 303240 303599 MC_gene_2609 1 - 303240 303599 -chrV 305594 305875 HC_gene_2610 1 - 305594 305875 -chrV 308271 311344 HC_gene_2611 8 - 308271 311344 -chrV 311809 312087 LC_gene_2612 1 - 311809 312087 -chrV 312289 313977 HC_gene_2613 23 - 312289 313977 -chrV 314146 316548 HC_gene_2614 19 - 314146 316548 -chrV 316732 318542 HC_gene_2615 28 - 316732 318542 -chrV 318781 319490 MC_gene_2616 1 - 318781 319490 -chrV 319013 319763 MC_gene_2617 1 - 319013 319763 -chrV 324010 327050 HC_gene_2618 205 - 324010 327050 -chrV 327480 328173 MC_gene_2619 1 - 327480 328173 -chrV 329411 330343 LC_gene_2620 1 - 329411 330343 -chrV 330960 332104 LC_gene_2621 1 - 330960 332104 -chrV 332371 332858 HC_gene_2622 628 - 332371 332858 -chrV 333039 335247 HC_gene_2623 63 - 333039 335247 -chrV 335260 337653 HC_gene_2624 55 - 335260 337653 -chrV 339634 342324 HC_gene_2625 311 - 339634 342324 -chrV 343260 347695 HC_gene_2626 3 - 343260 347695 -chrV 347781 348414 HC_gene_2627 33 - 347781 348414 -chrV 348558 349447 HC_gene_2628 427 - 348558 349447 -chrV 352563 353105 MC_gene_2629 1 - 352563 353105 -chrV 353518 354005 LC_gene_2630 1 - 353518 354005 -chrV 357218 359081 HC_gene_2631 1 - 357218 359081 -chrV 358029 359332 HC_gene_2632 91 - 358029 359332 -chrV 359499 359912 LC_gene_2633 1 - 359499 359912 -chrV 360375 362245 HC_gene_2634 16 - 360375 362245 -chrV 363705 364252 MC_gene_2635 2 - 363705 364252 -chrV 367616 372060 HC_gene_2636 9 - 367616 372060 -chrV 373182 374722 HC_gene_2637 54 - 373182 374722 -chrV 374935 377783 HC_gene_2638 8 - 374935 377783 -chrV 378530 379339 HC_gene_2639 70 - 378530 379339 -chrV 378607 382216 HC_gene_2640 53 - 378607 382216 -chrV 382448 386189 HC_gene_2641 6 - 382448 386189 -chrV 388060 390186 HC_gene_2642 1 - 388060 390186 -chrV 390300 394034 HC_gene_2643 15 - 390300 394034 -chrV 394161 396272 HC_gene_2644 35 - 394161 396272 -chrV 397659 399233 HC_gene_2645 84 - 397659 399233 -chrV 399399 400869 HC_gene_2646 18 - 399399 400869 -chrV 401877 402304 HC_gene_2647 4 - 401877 402304 -chrV 402733 404434 HC_gene_2648 289 - 402733 404434 -chrV 406762 409104 HC_gene_2649 92 - 406762 409104 -chrV 409179 410064 MC_gene_2650 1 - 409179 410064 -chrV 411489 413096 LC_gene_2651 1 - 411489 413096 -chrV 413245 414207 HC_gene_2652 228 - 413245 414207 -chrV 415599 416507 LC_gene_2653 1 - 415599 416507 -chrV 420894 422514 HC_gene_2654 61 - 420894 422514 -chrV 424349 425431 HC_gene_2655 17 - 424349 425431 -chrV 428014 428611 MC_gene_2656 1 - 428014 428611 -chrV 428747 429919 MC_gene_2657 1 - 428747 429919 -chrV 428878 430724 MC_gene_2658 2 - 428878 430724 -chrV 431330 432214 HC_gene_2659 1 - 431330 432214 -chrV 432428 432809 LC_gene_2660 1 - 432428 432809 -chrV 434359 434696 MC_gene_2661 1 - 434359 434696 -chrV 434964 435609 HC_gene_2662 15 - 434964 435609 -chrV 436302 437844 HC_gene_2663 10 - 436302 437844 -chrV 436967 437998 HC_gene_2664 32 - 436967 437998 -chrV 441186 441840 HC_gene_2665 32 - 441186 441840 -chrV 442716 443510 MC_gene_2666 1 - 442716 443510 -chrV 443340 445391 MC_gene_2667 1 - 443340 445391 -chrV 449692 451344 HC_gene_2668 15 - 449692 451344 -chrV 455055 456065 HC_gene_2669 45 - 455055 456065 -chrV 457686 460231 HC_gene_2670 15 - 457686 460231 -chrV 460347 461783 HC_gene_2671 166 - 460347 461783 -chrV 462860 464883 HC_gene_2672 20 - 462860 464883 -chrV 466127 467548 HC_gene_2673 36 - 466127 467548 -chrV 467685 467955 MC_gene_2674 1 - 467685 467955 -chrV 468288 469213 HC_gene_2675 4 - 468288 469213 -chrV 469603 475239 HC_gene_2676 74 - 469603 475239 -chrV 476190 482857 HC_gene_2677 79 - 476190 482857 -chrV 483208 484358 HC_gene_2678 155 - 483208 484358 -chrV 487859 488533 MC_gene_2679 1 - 487859 488533 -chrV 488712 490782 HC_gene_2680 17 - 488712 490782 -chrV 491364 492136 HC_gene_2681 331 - 491364 492136 -chrV 492628 498165 LC_gene_2682 1 - 492628 498165 -chrV 498095 498837 MC_gene_2683 2 - 498095 498837 -chrV 498990 500396 HC_gene_2684 52 - 498990 500396 -chrV 500444 502933 HC_gene_2685 17 - 500444 502933 -chrV 502893 503789 HC_gene_2686 137 - 502893 503789 -chrV 509795 510228 HC_gene_2687 3 - 509795 510228 -chrV 516916 517410 LC_gene_2688 1 - 516916 517410 -chrV 520910 522696 HC_gene_2689 34 - 520910 522696 -chrV 525831 526429 MC_gene_2690 1 - 525831 526429 -chrV 526916 527331 MC_gene_2691 1 - 526916 527331 -chrV 529404 536079 HC_gene_2692 7 - 529404 536079 -chrV 538320 540393 HC_gene_2693 135 - 538320 540393 -chrV 540499 541464 HC_gene_2694 13 - 540499 541464 -chrV 542101 542447 MC_gene_2695 1 - 542101 542447 -chrV 542507 544651 MC_gene_2696 2 - 542507 544651 -chrV 544505 545035 MC_gene_2697 1 - 544505 545035 -chrV 546463 547423 MC_gene_2698 1 - 546463 547423 -chrV 548427 549194 HC_gene_2699 6 - 548427 549194 -chrV 549658 551171 HC_gene_2700 19 - 549658 551171 -chrV 551447 552358 MC_gene_2701 1 - 551447 552358 -chrV 553240 553971 HC_gene_2702 149 - 553240 553971 -chrV 554826 555738 MC_gene_2703 1 - 554826 555738 -chrV 555303 556799 MC_gene_2704 2 - 555303 556799 -chrV 557159 558971 HC_gene_2705 1 - 557159 558971 -chrV 561324 562819 HC_gene_2706 58 - 561324 562819 -chrV 564632 565350 HC_gene_2707 4 - 564632 565350 -chrV 565490 566406 HC_gene_2708 1 - 565490 566406 -chrV 566691 567114 MC_gene_2709 1 - 566691 567114 -chrV 567191 567593 HC_gene_2710 5 - 567191 567593 -chrV 570102 572022 LC_gene_2711 1 - 570102 572022 -chrVI 11601 12413 MC_gene_2712 1 + 11601 12413 -chrVI 13219 14065 LC_gene_2713 1 + 13219 14065 -chrVI 16680 17796 MC_gene_2714 1 + 16680 17796 -chrVI 23594 25367 LC_gene_2715 1 + 23594 25367 -chrVI 28205 32868 HC_gene_2716 2 + 28205 32868 -chrVI 36797 38822 HC_gene_2717 12 + 36797 38822 -chrVI 40411 42630 HC_gene_2718 23 + 40411 42630 -chrVI 42795 43588 HC_gene_2719 110 + 42795 43588 -chrVI 44035 45585 LC_gene_2720 1 + 44035 45585 -chrVI 47878 48987 HC_gene_2721 18 + 47878 48987 -chrVI 49115 51281 HC_gene_2722 35 + 49115 51281 -chrVI 52581 53104 LC_gene_2723 1 + 52581 53104 -chrVI 54972 55348 HC_gene_2724 27 + 54972 55348 -chrVI 55356 55569 MC_gene_2725 1 + 55356 55569 -chrVI 56269 58064 HC_gene_2726 463 + 56269 58064 -chrVI 58579 62938 HC_gene_2727 18 + 58579 62938 -chrVI 62922 64218 LC_gene_2728 1 + 62922 64218 -chrVI 65286 67945 HC_gene_2729 1 + 65286 67945 -chrVI 67964 68817 HC_gene_2730 18 + 67964 68817 -chrVI 73833 74689 LC_gene_2731 1 + 73833 74689 -chrVI 75111 76563 HC_gene_2732 675 + 75111 76563 -chrVI 76714 78069 HC_gene_2733 13 + 76714 78069 -chrVI 78769 79369 HC_gene_2734 3 + 78769 79369 -chrVI 80423 80990 LC_gene_2735 1 + 80423 80990 -chrVI 82548 84141 HC_gene_2736 12 + 82548 84141 -chrVI 86799 87545 MC_gene_2737 1 + 86799 87545 -chrVI 89654 90765 HC_gene_2738 20 + 89654 90765 -chrVI 90970 93480 HC_gene_2739 13 + 90970 93480 -chrVI 95295 96653 HC_gene_2740 12 + 95295 96653 -chrVI 96083 97662 HC_gene_2741 12 + 96083 97662 -chrVI 100448 100903 MC_gene_2742 1 + 100448 100903 -chrVI 102937 103263 HC_gene_2743 4 + 102937 103263 -chrVI 103652 103999 HC_gene_2744 135 + 103652 103999 -chrVI 104006 104704 HC_gene_2745 5 + 104006 104704 -chrVI 106847 107213 HC_gene_2746 3 + 106847 107213 -chrVI 107377 107789 LC_gene_2747 1 + 107377 107789 -chrVI 110173 110550 HC_gene_2748 25 + 110173 110550 -chrVI 110544 111652 LC_gene_2749 1 + 110544 111652 -chrVI 111821 112351 HC_gene_2750 22 + 111821 112351 -chrVI 112359 114050 LC_gene_2751 1 + 112359 114050 -chrVI 115952 118607 HC_gene_2752 6 + 115952 118607 -chrVI 119386 123219 HC_gene_2753 9 + 119386 123219 -chrVI 123354 126610 HC_gene_2754 2 + 123354 126610 -chrVI 127848 129988 HC_gene_2755 1 + 127848 129988 -chrVI 130195 131205 HC_gene_2756 314 + 130195 131205 -chrVI 132123 132364 HC_gene_2757 1 + 132123 132364 -chrVI 132618 134372 HC_gene_2758 74 + 132618 134372 -chrVI 134840 135424 HC_gene_2759 1 + 134840 135424 -chrVI 138946 143927 MC_gene_2760 1 + 138946 143927 -chrVI 142012 144068 MC_gene_2761 1 + 142012 144068 -chrVI 143947 144491 MC_gene_2762 1 + 143947 144491 -chrVI 144824 145452 LC_gene_2763 1 + 144824 145452 -chrVI 147132 148493 HC_gene_2764 31 + 147132 148493 -chrVI 149070 149908 HC_gene_2765 368 + 149070 149908 -chrVI 149999 152630 HC_gene_2766 35 + 149999 152630 -chrVI 153361 154404 HC_gene_2767 440 + 153361 154404 -chrVI 156273 157842 HC_gene_2768 153 + 156273 157842 -chrVI 159277 160428 HC_gene_2769 46 + 159277 160428 -chrVI 160517 161632 HC_gene_2770 26 + 160517 161632 -chrVI 161652 161965 MC_gene_2771 1 + 161652 161965 -chrVI 162414 164964 HC_gene_2772 127 + 162414 164964 -chrVI 164983 166658 HC_gene_2773 112 + 164983 166658 -chrVI 165942 166769 HC_gene_2774 65 + 165942 166769 -chrVI 166781 167182 LC_gene_2775 1 + 166781 167182 -chrVI 167993 169571 MC_gene_2776 1 + 167993 169571 -chrVI 169860 172403 HC_gene_2777 31 + 169860 172403 -chrVI 174194 174955 MC_gene_2778 1 + 174194 174955 -chrVI 174938 176481 LC_gene_2779 1 + 174938 176481 -chrVI 177058 177590 MC_gene_2780 2 + 177058 177590 -chrVI 177403 177838 MC_gene_2781 1 + 177403 177838 -chrVI 184490 191386 HC_gene_2782 4 + 184490 191386 -chrVI 191763 193828 HC_gene_2783 19 + 191763 193828 -chrVI 194716 196425 HC_gene_2784 27 + 194716 196425 -chrVI 196544 197537 HC_gene_2785 3 + 196544 197537 -chrVI 199785 201815 LC_gene_2786 1 + 199785 201815 -chrVI 203684 204037 MC_gene_2787 1 + 203684 204037 -chrVI 204722 205747 MC_gene_2788 1 + 204722 205747 -chrVI 206033 207064 HC_gene_2789 3 + 206033 207064 -chrVI 207375 208427 HC_gene_2790 12 + 207375 208427 -chrVI 210872 213024 HC_gene_2791 14 + 210872 213024 -chrVI 213191 216488 HC_gene_2792 11 + 213191 216488 -chrVI 221701 222063 MC_gene_2793 1 + 221701 222063 -chrVI 222066 222445 LC_gene_2794 1 + 222066 222445 -chrVI 223905 224271 MC_gene_2795 1 + 223905 224271 -chrVI 224239 224473 MC_gene_2796 1 + 224239 224473 -chrVI 225575 226583 HC_gene_2797 179 + 225575 226583 -chrVI 226940 227535 HC_gene_2798 52 + 226940 227535 -chrVI 229384 232032 HC_gene_2799 12 + 229384 232032 -chrVI 233950 237326 HC_gene_2800 51 + 233950 237326 -chrVI 238408 240006 HC_gene_2801 32 + 238408 240006 -chrVI 241980 243067 HC_gene_2802 20 + 241980 243067 -chrVI 245026 245752 LC_gene_2803 1 + 245026 245752 -chrVI 246113 248186 HC_gene_2804 16 + 246113 248186 -chrVI 248356 249014 HC_gene_2805 233 + 248356 249014 -chrVI 250163 250541 MC_gene_2806 1 + 250163 250541 -chrVI 250743 251925 LC_gene_2807 1 + 250743 251925 -chrVI 252088 252363 HC_gene_2808 1 + 252088 252363 -chrVI 252463 253528 HC_gene_2809 342 + 252463 253528 -chrVI 255609 256491 MC_gene_2810 1 + 255609 256491 -chrVI 255738 257064 MC_gene_2811 3 + 255738 257064 -chrVI 256497 257681 MC_gene_2812 1 + 256497 257681 -chrVI 256790 258702 MC_gene_2813 1 + 256790 258702 -chrVI 260947 261716 MC_gene_2814 1 + 260947 261716 -chrVI 261761 262049 MC_gene_2815 1 + 261761 262049 -chrVI 263913 265707 HC_gene_2816 105 + 263913 265707 -chrVI 265838 266259 LC_gene_2817 1 + 265838 266259 -chrVI 267097 269069 LC_gene_2818 1 + 267097 269069 -chrVI 5953 6125 MC_gene_2819 1 - 5953 6125 -chrVI 8456 11062 HC_gene_2820 2 - 8456 11062 -chrVI 12156 12474 MC_gene_2821 1 - 12156 12474 -chrVI 14190 16493 HC_gene_2822 11 - 14190 16493 -chrVI 20776 22863 HC_gene_2823 4 - 20776 22863 -chrVI 25293 26437 MC_gene_2824 1 - 25293 26437 -chrVI 25383 27891 MC_gene_2825 1 - 25383 27891 -chrVI 30441 31084 MC_gene_2826 1 - 30441 31084 -chrVI 31539 32002 LC_gene_2827 1 - 31539 32002 -chrVI 32996 36580 HC_gene_2828 1 - 32996 36580 -chrVI 38730 40203 HC_gene_2829 69 - 38730 40203 -chrVI 43467 45592 HC_gene_2830 838 - 43467 45592 -chrVI 45626 47778 HC_gene_2831 7 - 45626 47778 -chrVI 48567 48964 LC_gene_2832 1 - 48567 48964 -chrVI 51302 52998 LC_gene_2833 1 - 51302 52998 -chrVI 52969 54817 HC_gene_2834 3579 - 52969 54817 -chrVI 55243 56020 HC_gene_2835 899 - 55243 56020 -chrVI 62841 64035 HC_gene_2836 27 - 62841 64035 -chrVI 64155 64975 HC_gene_2837 774 - 64155 64975 -chrVI 68890 72547 HC_gene_2838 9 - 68890 72547 -chrVI 74488 74596 HC_gene_2839 1 - 74488 74596 -chrVI 76422 77749 HC_gene_2840 1 - 76422 77749 -chrVI 77985 79201 HC_gene_2841 40 - 77985 79201 -chrVI 79267 80236 HC_gene_2842 106 - 79267 80236 -chrVI 80340 81911 HC_gene_2843 21 - 80340 81911 -chrVI 83968 87312 HC_gene_2844 6 - 83968 87312 -chrVI 87438 90660 HC_gene_2845 44 - 87438 90660 -chrVI 93310 95182 HC_gene_2846 258 - 93310 95182 -chrVI 95748 97479 MC_gene_2847 1 - 95748 97479 -chrVI 97525 98765 HC_gene_2848 17 - 97525 98765 -chrVI 99078 99632 MC_gene_2849 1 - 99078 99632 -chrVI 101517 103213 HC_gene_2850 365 - 101517 103213 -chrVI 103169 103557 HC_gene_2851 1 - 103169 103557 -chrVI 103798 104495 HC_gene_2852 194 - 103798 104495 -chrVI 104596 106298 HC_gene_2853 161 - 104596 106298 -chrVI 107680 109953 HC_gene_2854 30 - 107680 109953 -chrVI 111111 111859 HC_gene_2855 14 - 111111 111859 -chrVI 113944 114542 MC_gene_2856 1 - 113944 114542 -chrVI 114982 115773 HC_gene_2857 565 - 114982 115773 -chrVI 118703 119127 MC_gene_2858 1 - 118703 119127 -chrVI 127414 129617 LC_gene_2859 1 - 127414 129617 -chrVI 130257 131627 HC_gene_2860 17 - 130257 131627 -chrVI 133942 135820 MC_gene_2861 2 - 133942 135820 -chrVI 134394 135901 MC_gene_2862 1 - 134394 135901 -chrVI 137146 137897 LC_gene_2863 1 - 137146 137897 -chrVI 143306 143922 LC_gene_2864 1 - 143306 143922 -chrVI 144292 144568 MC_gene_2865 1 - 144292 144568 -chrVI 144901 146951 HC_gene_2866 71 - 144901 146951 -chrVI 148650 149122 LC_gene_2867 1 - 148650 149122 -chrVI 152492 153250 HC_gene_2868 146 - 152492 153250 -chrVI 154318 155881 HC_gene_2869 43 - 154318 155881 -chrVI 156285 156521 LC_gene_2870 1 - 156285 156521 -chrVI 156805 157804 MC_gene_2871 1 - 156805 157804 -chrVI 158177 159326 HC_gene_2872 9 - 158177 159326 -chrVI 161443 162116 MC_gene_2873 1 - 161443 162116 -chrVI 165319 166385 LC_gene_2874 1 - 165319 166385 -chrVI 166578 167291 HC_gene_2875 160 - 166578 167291 -chrVI 167641 168400 MC_gene_2876 1 - 167641 168400 -chrVI 172227 173912 HC_gene_2877 62 - 172227 173912 -chrVI 174086 176475 HC_gene_2878 27 - 174086 176475 -chrVI 176400 180837 HC_gene_2879 48 - 176400 180837 -chrVI 182156 182940 HC_gene_2880 66 - 182156 182940 -chrVI 182966 184284 HC_gene_2881 94 - 182966 184284 -chrVI 191729 192834 LC_gene_2882 1 - 191729 192834 -chrVI 193739 194243 MC_gene_2883 1 - 193739 194243 -chrVI 193802 196305 MC_gene_2884 1 - 193802 196305 -chrVI 200160 201171 LC_gene_2885 1 - 200160 201171 -chrVI 201720 203444 HC_gene_2886 161 - 201720 203444 -chrVI 203596 204775 HC_gene_2887 13 - 203596 204775 -chrVI 205664 207259 HC_gene_2888 7 - 205664 207259 -chrVI 207322 207753 MC_gene_2889 1 - 207322 207753 -chrVI 208335 210116 HC_gene_2890 50 - 208335 210116 -chrVI 212979 213407 HC_gene_2891 3 - 212979 213407 -chrVI 216540 220142 HC_gene_2892 28 - 216540 220142 -chrVI 220249 221529 HC_gene_2893 1865 - 220249 221529 -chrVI 223134 223794 HC_gene_2894 6324 - 223134 223794 -chrVI 224174 225994 HC_gene_2895 577 - 224174 225994 -chrVI 226875 227325 MC_gene_2896 1 - 226875 227325 -chrVI 227352 229193 HC_gene_2897 223 - 227352 229193 -chrVI 231946 233666 HC_gene_2898 19 - 231946 233666 -chrVI 237183 238279 HC_gene_2899 63 - 237183 238279 -chrVI 239057 239836 HC_gene_2900 30 - 239057 239836 -chrVI 239936 241843 HC_gene_2901 346 - 239936 241843 -chrVI 242827 245201 HC_gene_2902 166 - 242827 245201 -chrVI 245310 245934 MC_gene_2903 1 - 245310 245934 -chrVI 248393 248595 MC_gene_2904 1 - 248393 248595 -chrVI 248989 249920 HC_gene_2905 339 - 248989 249920 -chrVI 250089 251857 HC_gene_2906 195 - 250089 251857 -chrVI 251946 252280 MC_gene_2907 1 - 251946 252280 -chrVI 253421 255326 HC_gene_2908 720 - 253421 255326 -chrVI 256936 260036 LC_gene_2909 1 - 256936 260036 -chrVI 262469 263326 HC_gene_2910 23 - 262469 263326 -chrVI 265903 266678 MC_gene_2911 1 - 265903 266678 -chrVI 266163 267390 MC_gene_2912 1 - 266163 267390 -chrVII 8409 10049 LC_gene_2913 1 + 8409 10049 -chrVII 10446 11973 HC_gene_2914 6 + 10446 11973 -chrVII 12289 13587 LC_gene_2915 1 + 12289 13587 -chrVII 14464 16487 HC_gene_2916 42 + 14464 16487 -chrVII 16511 17121 MC_gene_2917 1 + 16511 17121 -chrVII 18918 22204 HC_gene_2918 22 + 18918 22204 -chrVII 22293 23942 HC_gene_2919 19 + 22293 23942 -chrVII 23886 25584 HC_gene_2920 2678 + 23886 25584 -chrVII 27763 28525 MC_gene_2921 1 + 27763 28525 -chrVII 30388 31070 MC_gene_2922 2 + 30388 31070 -chrVII 31904 32844 HC_gene_2923 32 + 31904 32844 -chrVII 32946 34694 LC_gene_2924 1 + 32946 34694 -chrVII 35587 36856 HC_gene_2925 46 + 35587 36856 -chrVII 36941 37680 HC_gene_2926 78 + 36941 37680 -chrVII 39006 41398 HC_gene_2927 584 + 39006 41398 -chrVII 41440 43263 HC_gene_2928 153 + 41440 43263 -chrVII 43331 44614 HC_gene_2929 40 + 43331 44614 -chrVII 45411 48487 HC_gene_2930 9 + 45411 48487 -chrVII 49548 50218 HC_gene_2931 3 + 49548 50218 -chrVII 50767 52480 HC_gene_2932 10 + 50767 52480 -chrVII 53389 53789 MC_gene_2933 1 + 53389 53789 -chrVII 56462 58994 HC_gene_2934 422 + 56462 58994 -chrVII 59091 61920 HC_gene_2935 27 + 59091 61920 -chrVII 62051 63075 HC_gene_2936 159 + 62051 63075 -chrVII 63762 64324 HC_gene_2937 5 + 63762 64324 -chrVII 67550 69496 HC_gene_2938 71 + 67550 69496 -chrVII 69642 72738 HC_gene_2939 8 + 69642 72738 -chrVII 73333 73775 HC_gene_2940 51 + 73333 73775 -chrVII 74549 76609 HC_gene_2941 7 + 74549 76609 -chrVII 76786 79065 HC_gene_2942 336 + 76786 79065 -chrVII 79206 80601 LC_gene_2943 1 + 79206 80601 -chrVII 81430 82947 HC_gene_2944 384 + 81430 82947 -chrVII 84616 87355 HC_gene_2945 7 + 84616 87355 -chrVII 87507 89912 HC_gene_2946 236 + 87507 89912 -chrVII 90520 91315 LC_gene_2947 1 + 90520 91315 -chrVII 91447 93702 HC_gene_2948 8 + 91447 93702 -chrVII 92487 93709 HC_gene_2949 24 + 92487 93709 -chrVII 93755 94695 HC_gene_2950 94 + 93755 94695 -chrVII 95244 95738 HC_gene_2951 1 + 95244 95738 -chrVII 95818 97123 HC_gene_2952 189 + 95818 97123 -chrVII 97318 98718 HC_gene_2953 4 + 97318 98718 -chrVII 98874 102329 HC_gene_2954 150 + 98874 102329 -chrVII 109807 110592 MC_gene_2955 1 + 109807 110592 -chrVII 111624 112170 LC_gene_2956 1 + 111624 112170 -chrVII 114932 115689 HC_gene_2957 28 + 114932 115689 -chrVII 115934 117747 HC_gene_2958 368 + 115934 117747 -chrVII 121164 122149 MC_gene_2959 1 + 121164 122149 -chrVII 122420 122869 HC_gene_2960 5 + 122420 122869 -chrVII 123582 124662 HC_gene_2961 109 + 123582 124662 -chrVII 124696 125263 MC_gene_2962 1 + 124696 125263 -chrVII 127566 129481 MC_gene_2963 2 + 127566 129481 -chrVII 129473 129786 HC_gene_2964 6 + 129473 129786 -chrVII 129816 131268 HC_gene_2965 55 + 129816 131268 -chrVII 131480 133442 HC_gene_2966 1 + 131480 133442 -chrVII 134159 139664 HC_gene_2967 108 + 134159 139664 -chrVII 140412 141394 MC_gene_2968 1 + 140412 141394 -chrVII 142009 144090 LC_gene_2969 1 + 142009 144090 -chrVII 144356 145449 HC_gene_2970 326 + 144356 145449 -chrVII 147867 148169 MC_gene_2971 1 + 147867 148169 -chrVII 149532 150627 MC_gene_2972 2 + 149532 150627 -chrVII 153202 154612 MC_gene_2973 1 + 153202 154612 -chrVII 154916 156202 LC_gene_2974 1 + 154916 156202 -chrVII 157851 159208 HC_gene_2975 102 + 157851 159208 -chrVII 159882 163031 HC_gene_2976 1 + 159882 163031 -chrVII 163154 163442 MC_gene_2977 1 + 163154 163442 -chrVII 165571 166079 LC_gene_2978 1 + 165571 166079 -chrVII 166351 166674 HC_gene_2979 4 + 166351 166674 -chrVII 167053 167395 HC_gene_2980 1 + 167053 167395 -chrVII 167846 168083 HC_gene_2981 1 + 167846 168083 -chrVII 169572 171217 HC_gene_2982 65 + 169572 171217 -chrVII 173271 174451 MC_gene_2983 1 + 173271 174451 -chrVII 174523 175548 HC_gene_2984 18 + 174523 175548 -chrVII 180666 182230 HC_gene_2985 79 + 180666 182230 -chrVII 182363 185088 HC_gene_2986 43 + 182363 185088 -chrVII 185984 187545 HC_gene_2987 37 + 185984 187545 -chrVII 191106 191958 HC_gene_2988 58 + 191106 191958 -chrVII 193496 193667 HC_gene_2989 5 + 193496 193667 -chrVII 197988 199215 HC_gene_2990 52 + 197988 199215 -chrVII 199802 200414 MC_gene_2991 1 + 199802 200414 -chrVII 200436 202391 HC_gene_2992 19 + 200436 202391 -chrVII 202700 203924 HC_gene_2993 20 + 202700 203924 -chrVII 205776 206421 HC_gene_2994 1 + 205776 206421 -chrVII 206717 208668 MC_gene_2995 2 + 206717 208668 -chrVII 208952 210142 HC_gene_2996 129 + 208952 210142 -chrVII 210332 213782 MC_gene_2997 1 + 210332 213782 -chrVII 212894 213795 MC_gene_2998 1 + 212894 213795 -chrVII 213940 215608 HC_gene_2999 33 + 213940 215608 -chrVII 216246 217347 HC_gene_3000 89 + 216246 217347 -chrVII 217467 221011 HC_gene_3001 47 + 217467 221011 -chrVII 226362 227640 HC_gene_3002 557 + 226362 227640 -chrVII 228777 230121 MC_gene_3003 1 + 228777 230121 -chrVII 230171 232482 HC_gene_3004 23 + 230171 232482 -chrVII 234728 235213 LC_gene_3005 1 + 234728 235213 -chrVII 235756 236235 MC_gene_3006 1 + 235756 236235 -chrVII 238343 241183 HC_gene_3007 14 + 238343 241183 -chrVII 245400 248504 HC_gene_3008 19 + 245400 248504 -chrVII 249843 253103 HC_gene_3009 31 + 249843 253103 -chrVII 251640 253159 HC_gene_3010 103 + 251640 253159 -chrVII 254575 255388 HC_gene_3011 2568 + 254575 255388 -chrVII 255564 257022 HC_gene_3012 29 + 255564 257022 -chrVII 257505 261574 HC_gene_3013 30 + 257505 261574 -chrVII 266101 267668 HC_gene_3014 34 + 266101 267668 -chrVII 268942 269205 MC_gene_3015 1 + 268942 269205 -chrVII 269250 270370 HC_gene_3016 4 + 269250 270370 -chrVII 270935 272397 HC_gene_3017 79 + 270935 272397 -chrVII 272376 274778 HC_gene_3018 32 + 272376 274778 -chrVII 275466 276781 MC_gene_3019 1 + 275466 276781 -chrVII 276368 276912 MC_gene_3020 1 + 276368 276912 -chrVII 277518 278472 HC_gene_3021 5628 + 277518 278472 -chrVII 280777 281248 HC_gene_3022 5 + 280777 281248 -chrVII 284422 286234 HC_gene_3023 4 + 284422 286234 -chrVII 286136 287154 HC_gene_3024 1 + 286136 287154 -chrVII 288429 289534 HC_gene_3025 188 + 288429 289534 -chrVII 289592 291742 HC_gene_3026 20 + 289592 291742 -chrVII 291911 293083 HC_gene_3027 128 + 291911 293083 -chrVII 293216 295706 HC_gene_3028 22 + 293216 295706 -chrVII 295842 298192 HC_gene_3029 12 + 295842 298192 -chrVII 299955 301698 HC_gene_3030 88 + 299955 301698 -chrVII 303615 303942 LC_gene_3031 1 + 303615 303942 -chrVII 304175 304866 LC_gene_3032 1 + 304175 304866 -chrVII 306530 307264 HC_gene_3033 636 + 306530 307264 -chrVII 307412 308692 HC_gene_3034 659 + 307412 308692 -chrVII 308989 309477 LC_gene_3035 1 + 308989 309477 -chrVII 310949 313092 HC_gene_3036 3501 + 310949 313092 -chrVII 313195 314374 HC_gene_3037 111 + 313195 314374 -chrVII 314610 316688 HC_gene_3038 55 + 314610 316688 -chrVII 316787 317329 HC_gene_3039 22 + 316787 317329 -chrVII 317296 319050 HC_gene_3040 20 + 317296 319050 -chrVII 320041 320528 HC_gene_3041 61 + 320041 320528 -chrVII 321738 323579 HC_gene_3042 118 + 321738 323579 -chrVII 324304 325280 MC_gene_3043 1 + 324304 325280 -chrVII 325291 328278 HC_gene_3044 12 + 325291 328278 -chrVII 328582 328858 MC_gene_3045 1 + 328582 328858 -chrVII 334855 337678 HC_gene_3046 10 + 334855 337678 -chrVII 337792 341975 HC_gene_3047 20 + 337792 341975 -chrVII 342416 343195 LC_gene_3048 1 + 342416 343195 -chrVII 343285 345393 HC_gene_3049 18 + 343285 345393 -chrVII 345985 346438 HC_gene_3050 171 + 345985 346438 -chrVII 347185 349439 HC_gene_3051 64 + 347185 349439 -chrVII 349575 350648 HC_gene_3052 47 + 349575 350648 -chrVII 352988 355600 HC_gene_3053 24 + 352988 355600 -chrVII 355746 357164 HC_gene_3054 94 + 355746 357164 -chrVII 357175 358653 MC_gene_3055 1 + 357175 358653 -chrVII 358602 359307 HC_gene_3056 185 + 358602 359307 -chrVII 359414 360236 HC_gene_3057 34 + 359414 360236 -chrVII 361051 361979 LC_gene_3058 1 + 361051 361979 -chrVII 362086 364051 HC_gene_3059 3 + 362086 364051 -chrVII 366353 366706 MC_gene_3060 1 + 366353 366706 -chrVII 368675 371313 HC_gene_3061 14 + 368675 371313 -chrVII 371352 374238 HC_gene_3062 17 + 371352 374238 -chrVII 375038 375854 HC_gene_3063 231 + 375038 375854 -chrVII 376017 377294 HC_gene_3064 36 + 376017 377294 -chrVII 377432 379809 HC_gene_3065 52 + 377432 379809 -chrVII 380133 381519 LC_gene_3066 1 + 380133 381519 -chrVII 382187 382743 LC_gene_3067 1 + 382187 382743 -chrVII 383396 385181 HC_gene_3068 11 + 383396 385181 -chrVII 385138 388875 HC_gene_3069 71 + 385138 388875 -chrVII 388947 389479 MC_gene_3070 2 + 388947 389479 -chrVII 389946 392271 HC_gene_3071 10 + 389946 392271 -chrVII 392186 393751 HC_gene_3072 25 + 392186 393751 -chrVII 393924 394927 HC_gene_3073 121 + 393924 394927 -chrVII 395158 396037 MC_gene_3074 1 + 395158 396037 -chrVII 398170 398603 HC_gene_3075 20 + 398170 398603 -chrVII 399210 400549 HC_gene_3076 660 + 399210 400549 -chrVII 400697 401480 LC_gene_3077 1 + 400697 401480 -chrVII 401838 403610 HC_gene_3078 129 + 401838 403610 -chrVII 403639 404503 MC_gene_3079 1 + 403639 404503 -chrVII 405474 405713 MC_gene_3080 1 + 405474 405713 -chrVII 405730 406885 HC_gene_3081 72 + 405730 406885 -chrVII 411463 412381 MC_gene_3082 1 + 411463 412381 -chrVII 412475 413681 LC_gene_3083 1 + 412475 413681 -chrVII 413672 415941 HC_gene_3084 17 + 413672 415941 -chrVII 416381 417155 LC_gene_3085 1 + 416381 417155 -chrVII 417459 419424 HC_gene_3086 199 + 417459 419424 -chrVII 420909 421222 MC_gene_3087 1 + 420909 421222 -chrVII 420976 421475 MC_gene_3088 1 + 420976 421475 -chrVII 422127 422916 HC_gene_3089 16 + 422127 422916 -chrVII 423853 425130 HC_gene_3090 147 + 423853 425130 -chrVII 426960 427375 HC_gene_3091 4 + 426960 427375 -chrVII 428491 430650 HC_gene_3092 3 + 428491 430650 -chrVII 430915 431490 MC_gene_3093 2 + 430915 431490 -chrVII 433495 435102 HC_gene_3094 8 + 433495 435102 -chrVII 436188 436738 HC_gene_3095 6 + 436188 436738 -chrVII 439031 439874 HC_gene_3096 4627 + 439031 439874 -chrVII 440019 440614 HC_gene_3097 319 + 440019 440614 -chrVII 442046 443137 MC_gene_3098 1 + 442046 443137 -chrVII 444020 444460 LC_gene_3099 1 + 444020 444460 -chrVII 444675 446374 LC_gene_3100 1 + 444675 446374 -chrVII 448787 450274 LC_gene_3101 1 + 448787 450274 -chrVII 452337 454641 HC_gene_3102 124 + 452337 454641 -chrVII 454826 457193 HC_gene_3103 22 + 454826 457193 -chrVII 458078 459104 HC_gene_3104 157 + 458078 459104 -chrVII 459836 461482 HC_gene_3105 17 + 459836 461482 -chrVII 461611 463981 HC_gene_3106 3 + 461611 463981 -chrVII 464184 465067 HC_gene_3107 12 + 464184 465067 -chrVII 465730 466058 HC_gene_3108 3 + 465730 466058 -chrVII 466716 468896 HC_gene_3109 37 + 466716 468896 -chrVII 468966 471010 MC_gene_3110 1 + 468966 471010 -chrVII 472816 474383 HC_gene_3111 268 + 472816 474383 -chrVII 475493 476268 HC_gene_3112 63 + 475493 476268 -chrVII 483925 484596 HC_gene_3113 2 + 483925 484596 -chrVII 485898 489561 HC_gene_3114 56 + 485898 489561 -chrVII 489649 491181 MC_gene_3115 1 + 489649 491181 -chrVII 494464 495391 HC_gene_3116 106 + 494464 495391 -chrVII 497905 498434 HC_gene_3117 4 + 497905 498434 -chrVII 499556 500076 MC_gene_3118 1 + 499556 500076 -chrVII 500119 502612 HC_gene_3119 10 + 500119 502612 -chrVII 502908 504661 HC_gene_3120 21 + 502908 504661 -chrVII 506057 508489 HC_gene_3121 112 + 506057 508489 -chrVII 508835 509094 MC_gene_3122 1 + 508835 509094 -chrVII 511314 512921 HC_gene_3123 23 + 511314 512921 -chrVII 513135 514430 HC_gene_3124 39 + 513135 514430 -chrVII 514529 516643 HC_gene_3125 12 + 514529 516643 -chrVII 516676 520991 HC_gene_3126 32 + 516676 520991 -chrVII 522294 523699 HC_gene_3127 12 + 522294 523699 -chrVII 523626 525177 HC_gene_3128 82 + 523626 525177 -chrVII 525189 526737 HC_gene_3129 198 + 525189 526737 -chrVII 527031 527421 LC_gene_3130 1 + 527031 527421 -chrVII 527625 528599 HC_gene_3131 30 + 527625 528599 -chrVII 529247 531213 HC_gene_3132 4 + 529247 531213 -chrVII 531613 531926 MC_gene_3133 1 + 531613 531926 -chrVII 532843 533982 HC_gene_3134 285 + 532843 533982 -chrVII 534079 534324 MC_gene_3135 1 + 534079 534324 -chrVII 535111 535759 HC_gene_3136 12 + 535111 535759 -chrVII 537209 540187 LC_gene_3137 1 + 537209 540187 -chrVII 542051 543459 HC_gene_3138 35 + 542051 543459 -chrVII 543551 544440 HC_gene_3139 144 + 543551 544440 -chrVII 545247 545903 HC_gene_3140 8 + 545247 545903 -chrVII 546408 554086 HC_gene_3141 34 + 546408 554086 -chrVII 555783 556803 HC_gene_3142 4267 + 555783 556803 -chrVII 558021 559459 HC_gene_3143 3 + 558021 559459 -chrVII 559196 559680 HC_gene_3144 47 + 559196 559680 -chrVII 560341 561412 HC_gene_3145 153 + 560341 561412 -chrVII 567872 567984 MC_gene_3146 1 + 567872 567984 -chrVII 574669 574845 MC_gene_3147 1 + 574669 574845 -chrVII 574915 577116 HC_gene_3148 24 + 574915 577116 -chrVII 576943 580451 HC_gene_3149 90 + 576943 580451 -chrVII 582079 584200 MC_gene_3150 1 + 582079 584200 -chrVII 584404 586396 HC_gene_3151 43 + 584404 586396 -chrVII 589769 590988 HC_gene_3152 102 + 589769 590988 -chrVII 591264 592149 HC_gene_3153 120 + 591264 592149 -chrVII 593133 593411 HC_gene_3154 43 + 593133 593411 -chrVII 593463 594856 MC_gene_3155 1 + 593463 594856 -chrVII 594052 594877 MC_gene_3156 1 + 594052 594877 -chrVII 596520 599323 HC_gene_3157 138 + 596520 599323 -chrVII 599285 601289 HC_gene_3158 145 + 599285 601289 -chrVII 601611 604528 HC_gene_3159 15 + 601611 604528 -chrVII 605075 605768 LC_gene_3160 1 + 605075 605768 -chrVII 605795 606064 HC_gene_3161 2 + 605795 606064 -chrVII 606113 607590 HC_gene_3162 24 + 606113 607590 -chrVII 608614 609191 MC_gene_3163 1 + 608614 609191 -chrVII 609407 609687 HC_gene_3164 5 + 609407 609687 -chrVII 610516 611798 HC_gene_3165 417 + 610516 611798 -chrVII 616315 618042 HC_gene_3166 1 + 616315 618042 -chrVII 620470 621906 MC_gene_3167 1 + 620470 621906 -chrVII 622028 622357 HC_gene_3168 24 + 622028 622357 -chrVII 627298 627737 HC_gene_3169 2 + 627298 627737 -chrVII 627777 631399 HC_gene_3170 2 + 627777 631399 -chrVII 634262 635591 HC_gene_3171 37 + 634262 635591 -chrVII 635698 636453 HC_gene_3172 130 + 635698 636453 -chrVII 637773 638400 HC_gene_3173 2 + 637773 638400 -chrVII 639641 640429 LC_gene_3174 1 + 639641 640429 -chrVII 640802 642001 HC_gene_3175 112 + 640802 642001 -chrVII 641979 643096 HC_gene_3176 101 + 641979 643096 -chrVII 643995 644843 HC_gene_3177 435 + 643995 644843 -chrVII 649285 649554 MC_gene_3178 1 + 649285 649554 -chrVII 650853 651273 MC_gene_3179 1 + 650853 651273 -chrVII 651716 652988 LC_gene_3180 1 + 651716 652988 -chrVII 653745 654362 LC_gene_3181 1 + 653745 654362 -chrVII 654432 656409 HC_gene_3182 13 + 654432 656409 -chrVII 656692 659901 HC_gene_3183 32 + 656692 659901 -chrVII 660074 661532 HC_gene_3184 3 + 660074 661532 -chrVII 662088 663713 HC_gene_3185 6 + 662088 663713 -chrVII 665570 666167 HC_gene_3186 24 + 665570 666167 -chrVII 666270 667933 HC_gene_3187 13 + 666270 667933 -chrVII 668128 670185 HC_gene_3188 37 + 668128 670185 -chrVII 670336 671994 HC_gene_3189 36 + 670336 671994 -chrVII 672188 675693 HC_gene_3190 561 + 672188 675693 -chrVII 676572 677628 HC_gene_3191 12 + 676572 677628 -chrVII 678393 678534 HC_gene_3192 1 + 678393 678534 -chrVII 678650 679920 HC_gene_3193 1 + 678650 679920 -chrVII 681463 682399 HC_gene_3194 17 + 681463 682399 -chrVII 687832 690046 HC_gene_3195 3 + 687832 690046 -chrVII 690161 691721 HC_gene_3196 1 + 690161 691721 -chrVII 692104 693176 HC_gene_3197 8 + 692104 693176 -chrVII 693325 694600 HC_gene_3198 33 + 693325 694600 -chrVII 695387 697555 HC_gene_3199 411 + 695387 697555 -chrVII 698548 699005 HC_gene_3200 476 + 698548 699005 -chrVII 699111 700000 MC_gene_3201 1 + 699111 700000 -chrVII 700096 700496 HC_gene_3202 2 + 700096 700496 -chrVII 701177 701317 MC_gene_3203 1 + 701177 701317 -chrVII 701255 701885 MC_gene_3204 1 + 701255 701885 -chrVII 701754 702552 MC_gene_3205 1 + 701754 702552 -chrVII 702125 703378 MC_gene_3206 1 + 702125 703378 -chrVII 703426 705208 HC_gene_3207 53 + 703426 705208 -chrVII 711947 712454 LC_gene_3208 1 + 711947 712454 -chrVII 713656 715148 HC_gene_3209 2 + 713656 715148 -chrVII 715485 717159 HC_gene_3210 55 + 715485 717159 -chrVII 717293 718711 HC_gene_3211 9 + 717293 718711 -chrVII 718842 720235 HC_gene_3212 37 + 718842 720235 -chrVII 720356 721849 HC_gene_3213 7 + 720356 721849 -chrVII 722118 724868 HC_gene_3214 41 + 722118 724868 -chrVII 725865 726488 LC_gene_3215 1 + 725865 726488 -chrVII 726949 727904 HC_gene_3216 5316 + 726949 727904 -chrVII 729964 730631 HC_gene_3217 4 + 729964 730631 -chrVII 730770 731034 MC_gene_3218 1 + 730770 731034 -chrVII 731335 733169 HC_gene_3219 3 + 731335 733169 -chrVII 733637 735443 HC_gene_3220 32 + 733637 735443 -chrVII 736345 736478 MC_gene_3221 1 + 736345 736478 -chrVII 736348 736589 MC_gene_3222 1 + 736348 736589 -chrVII 736604 737124 LC_gene_3223 1 + 736604 737124 -chrVII 738468 738957 HC_gene_3224 17 + 738468 738957 -chrVII 739415 741875 HC_gene_3225 644 + 739415 741875 -chrVII 742253 745587 HC_gene_3226 22 + 742253 745587 -chrVII 745720 747954 HC_gene_3227 17 + 745720 747954 -chrVII 750363 752529 HC_gene_3228 58 + 750363 752529 -chrVII 754208 755354 HC_gene_3229 25 + 754208 755354 -chrVII 756924 757727 HC_gene_3230 16 + 756924 757727 -chrVII 757616 761307 HC_gene_3231 4 + 757616 761307 -chrVII 761337 763743 HC_gene_3232 742 + 761337 763743 -chrVII 765010 765877 MC_gene_3233 1 + 765010 765877 -chrVII 767015 767276 LC_gene_3234 1 + 767015 767276 -chrVII 767482 770375 HC_gene_3235 5 + 767482 770375 -chrVII 770523 773784 HC_gene_3236 56 + 770523 773784 -chrVII 774786 775211 HC_gene_3237 2 + 774786 775211 -chrVII 775414 777916 HC_gene_3238 20 + 775414 777916 -chrVII 778275 779246 HC_gene_3239 10 + 778275 779246 -chrVII 780177 781462 HC_gene_3240 6 + 780177 781462 -chrVII 781711 783990 HC_gene_3241 91 + 781711 783990 -chrVII 784204 785117 HC_gene_3242 2 + 784204 785117 -chrVII 785300 786056 HC_gene_3243 4 + 785300 786056 -chrVII 788647 790479 HC_gene_3244 62 + 788647 790479 -chrVII 793292 794355 MC_gene_3245 1 + 793292 794355 -chrVII 795872 796864 HC_gene_3246 15 + 795872 796864 -chrVII 798500 800199 HC_gene_3247 1398 + 798500 800199 -chrVII 800410 801998 HC_gene_3248 37 + 800410 801998 -chrVII 802185 805238 HC_gene_3249 143 + 802185 805238 -chrVII 809988 810723 HC_gene_3250 95 + 809988 810723 -chrVII 811139 811771 MC_gene_3251 1 + 811139 811771 -chrVII 822536 823254 LC_gene_3252 1 + 822536 823254 -chrVII 823995 827339 HC_gene_3253 251 + 823995 827339 -chrVII 827493 828648 HC_gene_3254 62 + 827493 828648 -chrVII 829060 830315 HC_gene_3255 63 + 829060 830315 -chrVII 830433 832281 HC_gene_3256 6 + 830433 832281 -chrVII 832390 833423 HC_gene_3257 545 + 832390 833423 -chrVII 834102 834571 HC_gene_3258 7 + 834102 834571 -chrVII 835579 835952 LC_gene_3259 1 + 835579 835952 -chrVII 837084 840834 HC_gene_3260 5 + 837084 840834 -chrVII 840178 840989 HC_gene_3261 17 + 840178 840989 -chrVII 843811 845235 HC_gene_3262 77 + 843811 845235 -chrVII 845661 845869 MC_gene_3263 1 + 845661 845869 -chrVII 846513 846892 HC_gene_3264 22 + 846513 846892 -chrVII 848583 849424 MC_gene_3265 1 + 848583 849424 -chrVII 849595 850674 LC_gene_3266 1 + 849595 850674 -chrVII 850795 851033 HC_gene_3267 4 + 850795 851033 -chrVII 851016 853268 LC_gene_3268 1 + 851016 853268 -chrVII 853768 854409 LC_gene_3269 1 + 853768 854409 -chrVII 858265 858787 HC_gene_3270 377 + 858265 858787 -chrVII 859561 859908 MC_gene_3271 1 + 859561 859908 -chrVII 865926 866342 MC_gene_3272 1 + 865926 866342 -chrVII 866689 867198 LC_gene_3273 1 + 866689 867198 -chrVII 867745 870166 HC_gene_3274 149 + 867745 870166 -chrVII 871806 872800 LC_gene_3275 1 + 871806 872800 -chrVII 875316 876264 HC_gene_3276 11 + 875316 876264 -chrVII 878932 879442 HC_gene_3277 2 + 878932 879442 -chrVII 879459 879658 LC_gene_3278 1 + 879459 879658 -chrVII 879740 882417 HC_gene_3279 1 + 879740 882417 -chrVII 880281 882569 HC_gene_3280 115 + 880281 882569 -chrVII 886051 888428 LC_gene_3281 1 + 886051 888428 -chrVII 888760 890034 HC_gene_3282 95 + 888760 890034 -chrVII 892482 893536 MC_gene_3283 1 + 892482 893536 -chrVII 894650 897244 HC_gene_3284 15 + 894650 897244 -chrVII 897459 900100 HC_gene_3285 15 + 897459 900100 -chrVII 902532 903606 HC_gene_3286 2 + 902532 903606 -chrVII 905072 905874 HC_gene_3287 49 + 905072 905874 -chrVII 907097 908880 HC_gene_3288 140 + 907097 908880 -chrVII 909085 910214 HC_gene_3289 66 + 909085 910214 -chrVII 910409 910825 HC_gene_3290 121 + 910409 910825 -chrVII 911836 912862 HC_gene_3291 151 + 911836 912862 -chrVII 914111 914814 LC_gene_3292 1 + 914111 914814 -chrVII 915180 916901 HC_gene_3293 102 + 915180 916901 -chrVII 917034 918498 HC_gene_3294 1 + 917034 918498 -chrVII 917086 919550 HC_gene_3295 1 + 917086 919550 -chrVII 920552 922056 HC_gene_3296 2123 + 920552 922056 -chrVII 922125 922643 HC_gene_3297 205 + 922125 922643 -chrVII 924643 930864 MC_gene_3298 1 + 924643 930864 -chrVII 931233 931984 MC_gene_3299 1 + 931233 931984 -chrVII 932240 936002 HC_gene_3300 27 + 932240 936002 -chrVII 937106 938286 HC_gene_3301 4 + 937106 938286 -chrVII 939660 940898 HC_gene_3302 85 + 939660 940898 -chrVII 945046 947156 MC_gene_3303 2 + 945046 947156 -chrVII 947339 949306 HC_gene_3304 31 + 947339 949306 -chrVII 951544 952406 HC_gene_3305 75 + 951544 952406 -chrVII 953750 954703 HC_gene_3306 167 + 953750 954703 -chrVII 957148 957942 LC_gene_3307 1 + 957148 957942 -chrVII 958109 958800 LC_gene_3308 1 + 958109 958800 -chrVII 959882 961362 HC_gene_3309 461 + 959882 961362 -chrVII 962377 962733 LC_gene_3310 1 + 962377 962733 -chrVII 963837 964583 LC_gene_3311 1 + 963837 964583 -chrVII 965258 965742 MC_gene_3312 1 + 965258 965742 -chrVII 968827 969190 HC_gene_3313 18 + 968827 969190 -chrVII 970324 970732 HC_gene_3314 12 + 970324 970732 -chrVII 974229 974908 HC_gene_3315 68 + 974229 974908 -chrVII 977239 977818 HC_gene_3316 25 + 977239 977818 -chrVII 978369 979191 LC_gene_3317 1 + 978369 979191 -chrVII 984415 984695 MC_gene_3318 1 + 984415 984695 -chrVII 984864 985777 HC_gene_3319 24 + 984864 985777 -chrVII 985936 986838 MC_gene_3320 2 + 985936 986838 -chrVII 987236 987918 LC_gene_3321 1 + 987236 987918 -chrVII 987923 989916 HC_gene_3322 4 + 987923 989916 -chrVII 990178 990834 MC_gene_3323 1 + 990178 990834 -chrVII 994303 994997 HC_gene_3324 5 + 994303 994997 -chrVII 995609 996698 HC_gene_3325 65 + 995609 996698 -chrVII 996819 998388 HC_gene_3326 41 + 996819 998388 -chrVII 1000666 1000820 MC_gene_3327 1 + 1000666 1000820 -chrVII 1000888 1002384 HC_gene_3328 1353 + 1000888 1002384 -chrVII 1002548 1003011 MC_gene_3329 1 + 1002548 1003011 -chrVII 1004428 1006216 HC_gene_3330 6 + 1004428 1006216 -chrVII 1008228 1008959 LC_gene_3331 1 + 1008228 1008959 -chrVII 1011585 1011785 MC_gene_3332 1 + 1011585 1011785 -chrVII 1011936 1012320 HC_gene_3333 4 + 1011936 1012320 -chrVII 1012285 1014325 HC_gene_3334 230 + 1012285 1014325 -chrVII 1017943 1019553 LC_gene_3335 1 + 1017943 1019553 -chrVII 1022590 1024993 HC_gene_3336 19 + 1022590 1024993 -chrVII 1026134 1026535 MC_gene_3337 1 + 1026134 1026535 -chrVII 1026877 1031584 HC_gene_3338 29 + 1026877 1031584 -chrVII 1031766 1037824 HC_gene_3339 2 + 1031766 1037824 -chrVII 1038838 1039223 LC_gene_3340 1 + 1038838 1039223 -chrVII 1043254 1043846 HC_gene_3341 279 + 1043254 1043846 -chrVII 1045768 1046267 LC_gene_3342 1 + 1045768 1046267 -chrVII 1046719 1048623 HC_gene_3343 7 + 1046719 1048623 -chrVII 1050237 1050792 LC_gene_3344 1 + 1050237 1050792 -chrVII 1052000 1057713 HC_gene_3345 110 + 1052000 1057713 -chrVII 1059040 1059543 HC_gene_3346 14 + 1059040 1059543 -chrVII 1060294 1061711 HC_gene_3347 7 + 1060294 1061711 -chrVII 1061906 1062211 LC_gene_3348 1 + 1061906 1062211 -chrVII 1063714 1064197 LC_gene_3349 1 + 1063714 1064197 -chrVII 1065106 1065498 MC_gene_3350 1 + 1065106 1065498 -chrVII 1065473 1065585 MC_gene_3351 1 + 1065473 1065585 -chrVII 1066355 1066736 MC_gene_3352 1 + 1066355 1066736 -chrVII 1070221 1072192 HC_gene_3353 1 + 1070221 1072192 -chrVII 1073241 1073898 MC_gene_3354 1 + 1073241 1073898 -chrVII 1074280 1075835 LC_gene_3355 1 + 1074280 1075835 -chrVII 1076569 1078483 HC_gene_3356 1 + 1076569 1078483 -chrVII 1078609 1079829 HC_gene_3357 14 + 1078609 1079829 -chrVII 1081213 1083618 MC_gene_3358 1 + 1081213 1083618 -chrVII 1082921 1083758 MC_gene_3359 1 + 1082921 1083758 -chrVII 9429 10188 LC_gene_3360 1 - 9429 10188 -chrVII 11863 14463 HC_gene_3361 50 - 11863 14463 -chrVII 16389 16782 MC_gene_3362 1 - 16389 16782 -chrVII 17266 17692 HC_gene_3363 13 - 17266 17692 -chrVII 20078 23082 HC_gene_3364 1 - 20078 23082 -chrVII 25458 27523 MC_gene_3365 8 - 25458 27523 -chrVII 27662 30239 HC_gene_3366 6 - 27662 30239 -chrVII 31816 32861 HC_gene_3367 1 - 31816 32861 -chrVII 33065 35108 HC_gene_3368 6 - 33065 35108 -chrVII 35313 35979 LC_gene_3369 1 - 35313 35979 -chrVII 36287 36678 LC_gene_3370 1 - 36287 36678 -chrVII 37495 38821 HC_gene_3371 65 - 37495 38821 -chrVII 43155 44350 LC_gene_3372 1 - 43155 44350 -chrVII 44441 45237 HC_gene_3373 254 - 44441 45237 -chrVII 48482 49314 HC_gene_3374 4 - 48482 49314 -chrVII 50232 50627 LC_gene_3375 1 - 50232 50627 -chrVII 52407 53605 HC_gene_3376 51 - 52407 53605 -chrVII 53714 55810 HC_gene_3377 9 - 53714 55810 -chrVII 61569 62224 LC_gene_3378 1 - 61569 62224 -chrVII 62974 63641 HC_gene_3379 289 - 62974 63641 -chrVII 64238 67189 HC_gene_3380 6 - 64238 67189 -chrVII 68041 69397 LC_gene_3381 1 - 68041 69397 -chrVII 72170 73193 HC_gene_3382 182 - 72170 73193 -chrVII 73712 74242 HC_gene_3383 10 - 73712 74242 -chrVII 74262 74752 HC_gene_3384 1 - 74262 74752 -chrVII 77904 80378 HC_gene_3385 67 - 77904 80378 -chrVII 78934 80509 HC_gene_3386 7 - 78934 80509 -chrVII 80499 81256 HC_gene_3387 39 - 80499 81256 -chrVII 81344 82304 HC_gene_3388 164 - 81344 82304 -chrVII 82788 84283 HC_gene_3389 31 - 82788 84283 -chrVII 89838 91265 HC_gene_3390 91 - 89838 91265 -chrVII 92363 93038 LC_gene_3391 1 - 92363 93038 -chrVII 94435 95246 HC_gene_3392 2 - 94435 95246 -chrVII 95563 95772 MC_gene_3393 1 - 95563 95772 -chrVII 96641 97397 MC_gene_3394 1 - 96641 97397 -chrVII 102048 103007 HC_gene_3395 66 - 102048 103007 -chrVII 102112 107577 HC_gene_3396 34 - 102112 107577 -chrVII 108136 109886 LC_gene_3397 1 - 108136 109886 -chrVII 109878 110333 MC_gene_3398 1 - 109878 110333 -chrVII 110483 110698 MC_gene_3399 1 - 110483 110698 -chrVII 111216 112109 HC_gene_3400 32 - 111216 112109 -chrVII 112403 114729 HC_gene_3401 77 - 112403 114729 -chrVII 117594 120960 HC_gene_3402 41 - 117594 120960 -chrVII 122585 123330 HC_gene_3403 598 - 122585 123330 -chrVII 123510 124261 MC_gene_3404 1 - 123510 124261 -chrVII 129484 130837 LC_gene_3405 1 - 129484 130837 -chrVII 131175 131291 MC_gene_3406 1 - 131175 131291 -chrVII 139559 140207 HC_gene_3407 188 - 139559 140207 -chrVII 140244 141779 HC_gene_3408 11 - 140244 141779 -chrVII 141869 144136 HC_gene_3409 21 - 141869 144136 -chrVII 143982 144509 HC_gene_3410 1 - 143982 144509 -chrVII 144742 145168 LC_gene_3411 1 - 144742 145168 -chrVII 145343 147903 HC_gene_3412 54 - 145343 147903 -chrVII 148157 148980 HC_gene_3413 6753 - 148157 148980 -chrVII 149416 150635 HC_gene_3414 343 - 149416 150635 -chrVII 150991 152785 HC_gene_3415 58 - 150991 152785 -chrVII 153078 154316 HC_gene_3416 23 - 153078 154316 -chrVII 154500 156076 HC_gene_3417 24 - 154500 156076 -chrVII 156086 157207 HC_gene_3418 1 - 156086 157207 -chrVII 157222 157631 MC_gene_3419 1 - 157222 157631 -chrVII 159026 159705 MC_gene_3420 1 - 159026 159705 -chrVII 163319 165171 HC_gene_3421 25 - 163319 165171 -chrVII 165406 166542 HC_gene_3422 14 - 165406 166542 -chrVII 166848 167508 HC_gene_3423 4 - 166848 167508 -chrVII 171305 174359 HC_gene_3424 23 - 171305 174359 -chrVII 174945 180446 HC_gene_3425 160 - 174945 180446 -chrVII 184072 185607 LC_gene_3426 1 - 184072 185607 -chrVII 187453 189199 HC_gene_3427 58 - 187453 189199 -chrVII 190453 190903 HC_gene_3428 5 - 190453 190903 -chrVII 191796 193312 HC_gene_3429 52 - 191796 193312 -chrVII 193568 197908 HC_gene_3430 7 - 193568 197908 -chrVII 199057 200252 HC_gene_3431 133 - 199057 200252 -chrVII 200441 200829 LC_gene_3432 1 - 200441 200829 -chrVII 202310 203948 LC_gene_3433 1 - 202310 203948 -chrVII 205859 206063 MC_gene_3434 1 - 205859 206063 -chrVII 206294 206960 LC_gene_3435 1 - 206294 206960 -chrVII 208883 209365 LC_gene_3436 1 - 208883 209365 -chrVII 210380 213748 HC_gene_3437 2 - 210380 213748 -chrVII 215157 216101 HC_gene_3438 30 - 215157 216101 -chrVII 216890 217280 LC_gene_3439 1 - 216890 217280 -chrVII 220933 225929 HC_gene_3440 43 - 220933 225929 -chrVII 225828 226150 HC_gene_3441 19 - 225828 226150 -chrVII 227623 228347 HC_gene_3442 3666 - 227623 228347 -chrVII 232285 234534 HC_gene_3443 17 - 232285 234534 -chrVII 234564 235993 HC_gene_3444 19 - 234564 235993 -chrVII 236018 238165 HC_gene_3445 37 - 236018 238165 -chrVII 241108 245200 HC_gene_3446 25 - 241108 245200 -chrVII 251303 252242 LC_gene_3447 1 - 251303 252242 -chrVII 252769 253994 HC_gene_3448 25 - 252769 253994 -chrVII 255278 255980 LC_gene_3449 1 - 255278 255980 -chrVII 256870 257275 MC_gene_3450 1 - 256870 257275 -chrVII 260540 261773 MC_gene_3451 1 - 260540 261773 -chrVII 261825 265920 HC_gene_3452 1 - 261825 265920 -chrVII 266062 266282 MC_gene_3453 1 - 266062 266282 -chrVII 267520 269133 HC_gene_3454 40 - 267520 269133 -chrVII 269100 270145 HC_gene_3455 17 - 269100 270145 -chrVII 270244 271117 HC_gene_3456 92 - 270244 271117 -chrVII 272201 272897 HC_gene_3457 5 - 272201 272897 -chrVII 274655 276750 HC_gene_3458 20 - 274655 276750 -chrVII 278549 280539 HC_gene_3459 3 - 278549 280539 -chrVII 280596 281137 HC_gene_3460 36 - 280596 281137 -chrVII 281389 283994 HC_gene_3461 72 - 281389 283994 -chrVII 286085 287104 HC_gene_3462 9 - 286085 287104 -chrVII 287249 287444 LC_gene_3463 1 - 287249 287444 -chrVII 288333 289291 LC_gene_3464 1 - 288333 289291 -chrVII 292813 293224 MC_gene_3465 2 - 292813 293224 -chrVII 298044 299764 HC_gene_3466 62 - 298044 299764 -chrVII 300499 301537 MC_gene_3467 1 - 300499 301537 -chrVII 301439 304109 HC_gene_3468 97 - 301439 304109 -chrVII 304234 306333 HC_gene_3469 23 - 304234 306333 -chrVII 308574 310518 HC_gene_3470 21 - 308574 310518 -chrVII 312070 313052 HC_gene_3471 2 - 312070 313052 -chrVII 314201 314406 MC_gene_3472 1 - 314201 314406 -chrVII 316151 316515 LC_gene_3473 1 - 316151 316515 -chrVII 318961 319540 HC_gene_3474 520 - 318961 319540 -chrVII 320387 320932 MC_gene_3475 1 - 320387 320932 -chrVII 323205 324514 HC_gene_3476 9 - 323205 324514 -chrVII 325562 326739 MC_gene_3477 1 - 325562 326739 -chrVII 328779 330657 HC_gene_3478 44 - 328779 330657 -chrVII 330897 332659 HC_gene_3479 9 - 330897 332659 -chrVII 333033 334655 HC_gene_3480 1 - 333033 334655 -chrVII 337281 337610 MC_gene_3481 1 - 337281 337610 -chrVII 341816 343111 HC_gene_3482 38 - 341816 343111 -chrVII 343075 345183 LC_gene_3483 1 - 343075 345183 -chrVII 345200 345732 MC_gene_3484 1 - 345200 345732 -chrVII 346198 346932 HC_gene_3485 114 - 346198 346932 -chrVII 348780 349395 MC_gene_3486 1 - 348780 349395 -chrVII 350387 352351 HC_gene_3487 30 - 350387 352351 -chrVII 352357 352757 MC_gene_3488 1 - 352357 352757 -chrVII 354386 355539 HC_gene_3489 15 - 354386 355539 -chrVII 357362 357882 MC_gene_3490 1 - 357362 357882 -chrVII 358544 358976 LC_gene_3491 1 - 358544 358976 -chrVII 359164 359852 HC_gene_3492 5 - 359164 359852 -chrVII 360081 361938 HC_gene_3493 218 - 360081 361938 -chrVII 362143 364039 HC_gene_3494 35 - 362143 364039 -chrVII 364224 366019 HC_gene_3495 3130 - 364224 366019 -chrVII 366301 366639 HC_gene_3496 95 - 366301 366639 -chrVII 366576 368255 HC_gene_3497 7 - 366576 368255 -chrVII 370614 371219 HC_gene_3498 44 - 370614 371219 -chrVII 374037 374853 HC_gene_3499 167 - 374037 374853 -chrVII 375701 377199 MC_gene_3500 1 - 375701 377199 -chrVII 379701 381315 HC_gene_3501 36 - 379701 381315 -chrVII 381460 383216 HC_gene_3502 15 - 381460 383216 -chrVII 383472 384540 MC_gene_3503 1 - 383472 384540 -chrVII 388758 389785 HC_gene_3504 53 - 388758 389785 -chrVII 391411 391922 LC_gene_3505 1 - 391411 391922 -chrVII 393298 393712 HC_gene_3506 4 - 393298 393712 -chrVII 394752 395803 HC_gene_3507 22 - 394752 395803 -chrVII 395964 397794 HC_gene_3508 67 - 395964 397794 -chrVII 397948 398528 LC_gene_3509 1 - 397948 398528 -chrVII 400530 401380 HC_gene_3510 513 - 400530 401380 -chrVII 401856 402346 MC_gene_3511 1 - 401856 402346 -chrVII 402349 404302 HC_gene_3512 12 - 402349 404302 -chrVII 404371 404518 MC_gene_3513 1 - 404371 404518 -chrVII 406689 409774 HC_gene_3514 48 - 406689 409774 -chrVII 409971 411315 HC_gene_3515 357 - 409971 411315 -chrVII 411807 412112 MC_gene_3516 1 - 411807 412112 -chrVII 412794 413875 LC_gene_3517 1 - 412794 413875 -chrVII 415866 417262 HC_gene_3518 82 - 415866 417262 -chrVII 417367 418637 LC_gene_3519 1 - 417367 418637 -chrVII 418754 420632 HC_gene_3520 216 - 418754 420632 -chrVII 421243 421794 LC_gene_3521 1 - 421243 421794 -chrVII 423347 423830 MC_gene_3522 1 - 423347 423830 -chrVII 425015 426850 HC_gene_3523 52 - 425015 426850 -chrVII 427154 428023 HC_gene_3524 861 - 427154 428023 -chrVII 428042 428345 MC_gene_3525 1 - 428042 428345 -chrVII 431317 432175 MC_gene_3526 1 - 431317 432175 -chrVII 431370 433102 MC_gene_3527 3 - 431370 433102 -chrVII 436367 436888 HC_gene_3528 13 - 436367 436888 -chrVII 437230 438443 HC_gene_3529 2988 - 437230 438443 -chrVII 439661 439876 MC_gene_3530 1 - 439661 439876 -chrVII 440875 443307 HC_gene_3531 297 - 440875 443307 -chrVII 442900 443538 HC_gene_3532 1 - 442900 443538 -chrVII 443545 446175 HC_gene_3533 76 - 443545 446175 -chrVII 446328 448554 HC_gene_3534 265 - 446328 448554 -chrVII 448677 449986 HC_gene_3535 35 - 448677 449986 -chrVII 450067 452143 HC_gene_3536 39 - 450067 452143 -chrVII 454524 455839 MC_gene_3537 1 - 454524 455839 -chrVII 457073 457935 HC_gene_3538 165 - 457073 457935 -chrVII 458848 459700 HC_gene_3539 38 - 458848 459700 -chrVII 468992 472429 HC_gene_3540 15 - 468992 472429 -chrVII 472778 475284 HC_gene_3541 640 - 472778 475284 -chrVII 475455 475708 MC_gene_3542 1 - 475455 475708 -chrVII 475529 476012 MC_gene_3543 1 - 475529 476012 -chrVII 476168 478728 HC_gene_3544 210 - 476168 478728 -chrVII 479243 482903 HC_gene_3545 8406 - 479243 482903 -chrVII 482847 483880 HC_gene_3546 3 - 482847 483880 -chrVII 483886 484828 MC_gene_3547 1 - 483886 484828 -chrVII 489387 490562 HC_gene_3548 30 - 489387 490562 -chrVII 490684 491961 HC_gene_3549 14 - 490684 491961 -chrVII 492218 494278 HC_gene_3550 36 - 492218 494278 -chrVII 495253 496557 HC_gene_3551 145 - 495253 496557 -chrVII 497053 498053 HC_gene_3552 126 - 497053 498053 -chrVII 498183 499916 HC_gene_3553 23 - 498183 499916 -chrVII 502325 502710 HC_gene_3554 2 - 502325 502710 -chrVII 504548 505890 HC_gene_3555 97 - 504548 505890 -chrVII 506403 506713 MC_gene_3556 1 - 506403 506713 -chrVII 507947 508546 HC_gene_3557 607 - 507947 508546 -chrVII 508906 511046 HC_gene_3558 65 - 508906 511046 -chrVII 511935 512438 MC_gene_3559 1 - 511935 512438 -chrVII 512531 512908 HC_gene_3560 6 - 512531 512908 -chrVII 513484 514344 LC_gene_3561 1 - 513484 514344 -chrVII 515089 515785 LC_gene_3562 1 - 515089 515785 -chrVII 520882 522096 HC_gene_3563 24 - 520882 522096 -chrVII 522833 525553 HC_gene_3564 16 - 522833 525553 -chrVII 526630 527386 HC_gene_3565 543 - 526630 527386 -chrVII 528025 528484 MC_gene_3566 1 - 528025 528484 -chrVII 528477 530056 LC_gene_3567 1 - 528477 530056 -chrVII 531051 531443 LC_gene_3568 1 - 531051 531443 -chrVII 531799 532600 HC_gene_3569 177 - 531799 532600 -chrVII 534067 534829 HC_gene_3570 4912 - 534067 534829 -chrVII 535009 535809 HC_gene_3571 1 - 535009 535809 -chrVII 543387 544350 HC_gene_3572 2 - 543387 544350 -chrVII 544285 544467 HC_gene_3573 3 - 544285 544467 -chrVII 545431 546172 HC_gene_3574 107 - 545431 546172 -chrVII 546563 547122 MC_gene_3575 1 - 546563 547122 -chrVII 553926 554715 HC_gene_3576 33 - 553926 554715 -chrVII 553936 555062 HC_gene_3577 86 - 553936 555062 -chrVII 556551 556857 LC_gene_3578 1 - 556551 556857 -chrVII 556902 557513 HC_gene_3579 971 - 556902 557513 -chrVII 557457 559027 HC_gene_3580 44 - 557457 559027 -chrVII 559262 560049 HC_gene_3581 1365 - 559262 560049 -chrVII 559472 561335 HC_gene_3582 3 - 559472 561335 -chrVII 561493 561692 MC_gene_3583 1 - 561493 561692 -chrVII 567864 568541 MC_gene_3584 1 - 567864 568541 -chrVII 568790 574461 MC_gene_3585 1 - 568790 574461 -chrVII 574702 575251 LC_gene_3586 1 - 574702 575251 -chrVII 575597 576548 HC_gene_3587 1 - 575597 576548 -chrVII 577024 579274 HC_gene_3588 3 - 577024 579274 -chrVII 579408 579879 LC_gene_3589 1 - 579408 579879 -chrVII 580286 581607 HC_gene_3590 47 - 580286 581607 -chrVII 582722 584146 HC_gene_3591 104 - 582722 584146 -chrVII 586299 589505 HC_gene_3592 8 - 586299 589505 -chrVII 591153 591883 HC_gene_3593 11 - 591153 591883 -chrVII 591714 592520 HC_gene_3594 24 - 591714 592520 -chrVII 593485 594155 MC_gene_3595 1 - 593485 594155 -chrVII 594925 595941 HC_gene_3596 9 - 594925 595941 -chrVII 601153 601339 MC_gene_3597 1 - 601153 601339 -chrVII 604432 605580 HC_gene_3598 24 - 604432 605580 -chrVII 608810 609528 MC_gene_3599 1 - 608810 609528 -chrVII 610280 611431 LC_gene_3600 1 - 610280 611431 -chrVII 611783 615993 HC_gene_3601 206 - 611783 615993 -chrVII 616026 617314 HC_gene_3602 28 - 616026 617314 -chrVII 617394 617842 HC_gene_3603 224 - 617394 617842 -chrVII 617979 619877 HC_gene_3604 20 - 617979 619877 -chrVII 620755 621803 HC_gene_3605 2 - 620755 621803 -chrVII 622258 623551 MC_gene_3606 1 - 622258 623551 -chrVII 624923 627121 MC_gene_3607 1 - 624923 627121 -chrVII 627260 627533 HC_gene_3608 3 - 627260 627533 -chrVII 631287 634121 HC_gene_3609 4 - 631287 634121 -chrVII 634521 635062 LC_gene_3610 1 - 634521 635062 -chrVII 635548 636916 HC_gene_3611 12 - 635548 636916 -chrVII 636984 637629 HC_gene_3612 81 - 636984 637629 -chrVII 637665 639521 HC_gene_3613 15 - 637665 639521 -chrVII 639696 640405 HC_gene_3614 193 - 639696 640405 -chrVII 641961 643810 HC_gene_3615 108 - 641961 643810 -chrVII 644735 646848 HC_gene_3616 65 - 644735 646848 -chrVII 647045 648082 HC_gene_3617 43 - 647045 648082 -chrVII 648294 649014 HC_gene_3618 2057 - 648294 649014 -chrVII 649314 650915 HC_gene_3619 686 - 649314 650915 -chrVII 651227 653152 LC_gene_3620 1 - 651227 653152 -chrVII 653460 654036 HC_gene_3621 1 - 653460 654036 -chrVII 656261 656462 MC_gene_3622 1 - 656261 656462 -chrVII 656318 656925 MC_gene_3623 1 - 656318 656925 -chrVII 666838 667234 MC_gene_3624 1 - 666838 667234 -chrVII 666930 667805 MC_gene_3625 1 - 666930 667805 -chrVII 669981 670564 HC_gene_3626 3 - 669981 670564 -chrVII 671369 671866 LC_gene_3627 1 - 671369 671866 -chrVII 671908 672384 MC_gene_3628 1 - 671908 672384 -chrVII 675501 676391 HC_gene_3629 131 - 675501 676391 -chrVII 675570 677035 HC_gene_3630 1 - 675570 677035 -chrVII 677565 678450 MC_gene_3631 1 - 677565 678450 -chrVII 682396 687689 HC_gene_3632 2 - 682396 687689 -chrVII 688547 689941 LC_gene_3633 1 - 688547 689941 -chrVII 691643 693131 LC_gene_3634 1 - 691643 693131 -chrVII 694407 695160 HC_gene_3635 167 - 694407 695160 -chrVII 697303 698399 HC_gene_3636 21 - 697303 698399 -chrVII 698883 699844 HC_gene_3637 539 - 698883 699844 -chrVII 701146 701820 MC_gene_3638 2 - 701146 701820 -chrVII 702267 702707 MC_gene_3639 1 - 702267 702707 -chrVII 705243 706581 HC_gene_3640 4 - 705243 706581 -chrVII 713277 713485 HC_gene_3641 1 - 713277 713485 -chrVII 713552 715013 MC_gene_3642 1 - 713552 715013 -chrVII 715041 715599 HC_gene_3643 4 - 715041 715599 -chrVII 718489 719131 MC_gene_3644 1 - 718489 719131 -chrVII 719596 720134 MC_gene_3645 1 - 719596 720134 -chrVII 724833 726489 HC_gene_3646 25 - 724833 726489 -chrVII 726513 727896 LC_gene_3647 1 - 726513 727896 -chrVII 727930 729761 HC_gene_3648 106 - 727930 729761 -chrVII 729836 730855 HC_gene_3649 37 - 729836 730855 -chrVII 731307 732983 HC_gene_3650 6 - 731307 732983 -chrVII 732942 733256 HC_gene_3651 2 - 732942 733256 -chrVII 734595 735845 MC_gene_3652 2 - 734595 735845 -chrVII 736512 738230 HC_gene_3653 36 - 736512 738230 -chrVII 738534 738977 MC_gene_3654 1 - 738534 738977 -chrVII 739339 739668 LC_gene_3655 1 - 739339 739668 -chrVII 741687 742079 HC_gene_3656 30 - 741687 742079 -chrVII 745313 745677 LC_gene_3657 1 - 745313 745677 -chrVII 747730 750130 HC_gene_3658 39 - 747730 750130 -chrVII 751217 753890 HC_gene_3659 81 - 751217 753890 -chrVII 755328 756493 HC_gene_3660 297 - 755328 756493 -chrVII 756721 757395 HC_gene_3661 5 - 756721 757395 -chrVII 759482 760282 LC_gene_3662 1 - 759482 760282 -chrVII 760996 762038 LC_gene_3663 1 - 760996 762038 -chrVII 763304 765964 HC_gene_3664 88 - 763304 765964 -chrVII 765964 767166 LC_gene_3665 1 - 765964 767166 -chrVII 771384 772048 MC_gene_3666 1 - 771384 772048 -chrVII 774398 774762 MC_gene_3667 1 - 774398 774762 -chrVII 777702 778035 MC_gene_3668 1 - 777702 778035 -chrVII 778094 778694 LC_gene_3669 1 - 778094 778694 -chrVII 778904 779494 LC_gene_3670 1 - 778904 779494 -chrVII 780235 781413 LC_gene_3671 1 - 780235 781413 -chrVII 783858 785365 HC_gene_3672 107 - 783858 785365 -chrVII 785690 786984 HC_gene_3673 79 - 785690 786984 -chrVII 787225 788750 HC_gene_3674 2402 - 787225 788750 -chrVII 790325 793094 HC_gene_3675 27 - 790325 793094 -chrVII 794581 795654 HC_gene_3676 87 - 794581 795654 -chrVII 796553 798196 HC_gene_3677 7 - 796553 798196 -chrVII 799626 800031 LC_gene_3678 1 - 799626 800031 -chrVII 800100 800457 MC_gene_3679 1 - 800100 800457 -chrVII 800534 801881 HC_gene_3680 11 - 800534 801881 -chrVII 805032 806074 HC_gene_3681 75 - 805032 806074 -chrVII 806252 807795 HC_gene_3682 480 - 806252 807795 -chrVII 808358 809503 HC_gene_3683 409 - 808358 809503 -chrVII 810627 810896 HC_gene_3684 7 - 810627 810896 -chrVII 817443 822024 LC_gene_3685 1 - 817443 822024 -chrVII 823323 823698 LC_gene_3686 1 - 823323 823698 -chrVII 827008 828128 LC_gene_3687 1 - 827008 828128 -chrVII 828574 828789 MC_gene_3688 1 - 828574 828789 -chrVII 829468 830177 LC_gene_3689 1 - 829468 830177 -chrVII 831732 832178 HC_gene_3690 13 - 831732 832178 -chrVII 833267 834524 HC_gene_3691 29 - 833267 834524 -chrVII 834587 835930 HC_gene_3692 29 - 834587 835930 -chrVII 836017 836765 HC_gene_3693 433 - 836017 836765 -chrVII 838487 839187 MC_gene_3694 1 - 838487 839187 -chrVII 839548 839976 MC_gene_3695 1 - 839548 839976 -chrVII 839719 840381 MC_gene_3696 1 - 839719 840381 -chrVII 840713 842575 HC_gene_3697 7 - 840713 842575 -chrVII 842701 843628 HC_gene_3698 165 - 842701 843628 -chrVII 845767 846354 HC_gene_3699 95 - 845767 846354 -chrVII 846751 848451 HC_gene_3700 616 - 846751 848451 -chrVII 848612 850499 HC_gene_3701 7 - 848612 850499 -chrVII 850909 853428 HC_gene_3702 135 - 850909 853428 -chrVII 853582 854923 HC_gene_3703 23 - 853582 854923 -chrVII 855139 856511 HC_gene_3704 1098 - 855139 856511 -chrVII 857877 859549 HC_gene_3705 435 - 857877 859549 -chrVII 859817 862527 HC_gene_3706 45 - 859817 862527 -chrVII 863499 866128 MC_gene_3707 3 - 863499 866128 -chrVII 866214 867553 HC_gene_3708 624 - 866214 867553 -chrVII 870085 871502 HC_gene_3709 140 - 870085 871502 -chrVII 871893 874551 MC_gene_3710 1 - 871893 874551 -chrVII 874672 875149 HC_gene_3711 2 - 874672 875149 -chrVII 875492 876255 LC_gene_3712 1 - 875492 876255 -chrVII 876546 878271 HC_gene_3713 535 - 876546 878271 -chrVII 879561 879912 HC_gene_3714 10 - 879561 879912 -chrVII 882712 883849 HC_gene_3715 29974 - 882712 883849 -chrVII 884386 885831 HC_gene_3716 119 - 884386 885831 -chrVII 885967 887847 HC_gene_3717 11 - 885967 887847 -chrVII 889619 892227 HC_gene_3718 22 - 889619 892227 -chrVII 892429 894338 HC_gene_3719 17 - 892429 894338 -chrVII 897678 898040 MC_gene_3720 1 - 897678 898040 -chrVII 899652 902329 HC_gene_3721 38 - 899652 902329 -chrVII 902467 903135 HC_gene_3722 32 - 902467 903135 -chrVII 903324 903679 HC_gene_3723 10 - 903324 903679 -chrVII 903338 904763 HC_gene_3724 29 - 903338 904763 -chrVII 904925 905450 HC_gene_3725 50 - 904925 905450 -chrVII 908164 908777 MC_gene_3726 1 - 908164 908777 -chrVII 908803 909171 MC_gene_3727 1 - 908803 909171 -chrVII 909036 910234 MC_gene_3728 1 - 909036 910234 -chrVII 910730 911659 HC_gene_3729 194 - 910730 911659 -chrVII 912828 913281 HC_gene_3730 2056 - 912828 913281 -chrVII 913300 914849 HC_gene_3731 118 - 913300 914849 -chrVII 918399 919499 HC_gene_3732 1 - 918399 919499 -chrVII 922375 924490 HC_gene_3733 16 - 922375 924490 -chrVII 930781 931005 LC_gene_3734 1 - 930781 931005 -chrVII 931151 932022 MC_gene_3735 1 - 931151 932022 -chrVII 935791 936910 HC_gene_3736 119 - 935791 936910 -chrVII 937047 939080 HC_gene_3737 12 - 937047 939080 -chrVII 939347 939672 HC_gene_3738 3 - 939347 939672 -chrVII 940784 942265 HC_gene_3739 17 - 940784 942265 -chrVII 942295 944866 HC_gene_3740 4 - 942295 944866 -chrVII 949174 951205 HC_gene_3741 246 - 949174 951205 -chrVII 951242 951764 MC_gene_3742 1 - 951242 951764 -chrVII 952319 953539 HC_gene_3743 448 - 952319 953539 -chrVII 954609 958435 HC_gene_3744 3 - 954609 958435 -chrVII 958617 959376 HC_gene_3745 14 - 958617 959376 -chrVII 961106 962133 HC_gene_3746 193 - 961106 962133 -chrVII 962342 962740 MC_gene_3747 1 - 962342 962740 -chrVII 962816 965698 HC_gene_3748 35 - 962816 965698 -chrVII 965915 968655 HC_gene_3749 8 - 965915 968655 -chrVII 969086 969415 HC_gene_3750 43 - 969086 969415 -chrVII 970537 973968 HC_gene_3751 783 - 970537 973968 -chrVII 974026 974427 MC_gene_3752 1 - 974026 974427 -chrVII 974800 976698 HC_gene_3753 39 - 974800 976698 -chrVII 977960 982156 HC_gene_3754 244 - 977960 982156 -chrVII 982314 984287 HC_gene_3755 42 - 982314 984287 -chrVII 984594 985707 LC_gene_3756 1 - 984594 985707 -chrVII 987860 989674 HC_gene_3757 1 - 987860 989674 -chrVII 991072 993692 HC_gene_3758 75 - 991072 993692 -chrVII 993701 994114 HC_gene_3759 5 - 993701 994114 -chrVII 995246 995695 LC_gene_3760 1 - 995246 995695 -chrVII 995884 996633 MC_gene_3761 1 - 995884 996633 -chrVII 997473 999195 HC_gene_3762 438 - 997473 999195 -chrVII 999622 1000289 HC_gene_3763 23 - 999622 1000289 -chrVII 1002464 1004036 HC_gene_3764 61 - 1002464 1004036 -chrVII 1006123 1007416 HC_gene_3765 72 - 1006123 1007416 -chrVII 1007562 1010811 HC_gene_3766 20 - 1007562 1010811 -chrVII 1011585 1012288 MC_gene_3767 1 - 1011585 1012288 -chrVII 1012109 1012292 MC_gene_3768 1 - 1012109 1012292 -chrVII 1014138 1016787 HC_gene_3769 40 - 1014138 1016787 -chrVII 1016864 1017789 HC_gene_3770 89 - 1016864 1017789 -chrVII 1017904 1019250 HC_gene_3771 22 - 1017904 1019250 -chrVII 1019307 1022374 HC_gene_3772 274 - 1019307 1022374 -chrVII 1023934 1024415 MC_gene_3773 1 - 1023934 1024415 -chrVII 1024444 1027036 HC_gene_3774 228 - 1024444 1027036 -chrVII 1037694 1038642 HC_gene_3775 134 - 1037694 1038642 -chrVII 1039805 1043112 HC_gene_3776 10 - 1039805 1043112 -chrVII 1043741 1045518 HC_gene_3777 32 - 1043741 1045518 -chrVII 1045531 1046567 HC_gene_3778 51 - 1045531 1046567 -chrVII 1048334 1050054 HC_gene_3779 1527 - 1048334 1050054 -chrVII 1050094 1052205 HC_gene_3780 315 - 1050094 1052205 -chrVII 1057238 1058757 HC_gene_3781 1049 - 1057238 1058757 -chrVII 1058910 1060087 HC_gene_3782 48 - 1058910 1060087 -chrVII 1060343 1061631 HC_gene_3783 159 - 1060343 1061631 -chrVII 1061758 1063167 HC_gene_3784 986 - 1061758 1063167 -chrVII 1063651 1065054 HC_gene_3785 37 - 1063651 1065054 -chrVII 1067001 1069127 HC_gene_3786 2 - 1067001 1069127 -chrVII 1071400 1072673 LC_gene_3787 1 - 1071400 1072673 -chrVII 1072931 1073732 LC_gene_3788 1 - 1072931 1073732 -chrVII 1073773 1076145 HC_gene_3789 6 - 1073773 1076145 -chrVII 1077011 1078413 MC_gene_3790 1 - 1077011 1078413 -chrVII 1078693 1079532 LC_gene_3791 1 - 1078693 1079532 -chrVII 1079553 1080601 MC_gene_3792 1 - 1079553 1080601 -chrVII 1080711 1082737 HC_gene_3793 1 - 1080711 1082737 -chrVII 1084056 1085499 LC_gene_3794 1 - 1084056 1085499 -chrVIII 4006 5054 LC_gene_3795 1 + 4006 5054 -chrVIII 6392 7651 HC_gene_3796 89 + 6392 7651 -chrVIII 10753 11564 HC_gene_3797 67 + 10753 11564 -chrVIII 11611 11847 LC_gene_3798 1 + 11611 11847 -chrVIII 11966 12978 MC_gene_3799 2 + 11966 12978 -chrVIII 13546 14571 HC_gene_3800 36 + 13546 14571 -chrVIII 15829 17120 HC_gene_3801 7 + 15829 17120 -chrVIII 18562 19188 LC_gene_3802 1 + 18562 19188 -chrVIII 21729 23610 HC_gene_3803 24 + 21729 23610 -chrVIII 26209 27985 MC_gene_3804 2 + 26209 27985 -chrVIII 32626 33109 LC_gene_3805 1 + 32626 33109 -chrVIII 33161 34167 LC_gene_3806 1 + 33161 34167 -chrVIII 36424 38446 LC_gene_3807 1 + 36424 38446 -chrVIII 38859 39491 LC_gene_3808 1 + 38859 39491 -chrVIII 40044 42310 MC_gene_3809 1 + 40044 42310 -chrVIII 44705 45786 HC_gene_3810 20 + 44705 45786 -chrVIII 48316 48744 HC_gene_3811 2 + 48316 48744 -chrVIII 48693 50660 HC_gene_3812 6 + 48693 50660 -chrVIII 51014 53200 HC_gene_3813 22 + 51014 53200 -chrVIII 54791 55953 HC_gene_3814 113 + 54791 55953 -chrVIII 57103 59020 LC_gene_3815 1 + 57103 59020 -chrVIII 59126 60112 HC_gene_3816 2 + 59126 60112 -chrVIII 61139 62366 LC_gene_3817 1 + 61139 62366 -chrVIII 62962 64265 LC_gene_3818 1 + 62962 64265 -chrVIII 64523 64991 HC_gene_3819 10 + 64523 64991 -chrVIII 65715 66285 MC_gene_3820 1 + 65715 66285 -chrVIII 66228 66979 MC_gene_3821 1 + 66228 66979 -chrVIII 68057 68979 LC_gene_3822 1 + 68057 68979 -chrVIII 69692 72413 HC_gene_3823 22 + 69692 72413 -chrVIII 75381 76031 HC_gene_3824 4333 + 75381 76031 -chrVIII 79717 80725 HC_gene_3825 1 + 79717 80725 -chrVIII 88143 91795 LC_gene_3826 1 + 88143 91795 -chrVIII 92249 92568 MC_gene_3827 1 + 92249 92568 -chrVIII 95005 96997 MC_gene_3828 1 + 95005 96997 -chrVIII 98430 98947 HC_gene_3829 9 + 98430 98947 -chrVIII 99137 100501 HC_gene_3830 58 + 99137 100501 -chrVIII 102251 102554 HC_gene_3831 104 + 102251 102554 -chrVIII 102591 104031 HC_gene_3832 67 + 102591 104031 -chrVIII 104247 105220 HC_gene_3833 1707 + 104247 105220 -chrVIII 105824 107463 HC_gene_3834 67 + 105824 107463 -chrVIII 107758 108522 HC_gene_3835 244 + 107758 108522 -chrVIII 108685 110017 HC_gene_3836 29 + 108685 110017 -chrVIII 110094 111613 LC_gene_3837 1 + 110094 111613 -chrVIII 111576 113506 MC_gene_3838 1 + 111576 113506 -chrVIII 115537 115821 MC_gene_3839 1 + 115537 115821 -chrVIII 116714 117437 LC_gene_3840 1 + 116714 117437 -chrVIII 117789 119568 HC_gene_3841 37 + 117789 119568 -chrVIII 122629 123116 MC_gene_3842 1 + 122629 123116 -chrVIII 122914 123200 MC_gene_3843 1 + 122914 123200 -chrVIII 123882 124181 MC_gene_3844 1 + 123882 124181 -chrVIII 126487 127657 HC_gene_3845 2197 + 126487 127657 -chrVIII 127762 129213 HC_gene_3846 4 + 127762 129213 -chrVIII 129266 130776 HC_gene_3847 69 + 129266 130776 -chrVIII 131736 132980 LC_gene_3848 1 + 131736 132980 -chrVIII 133594 133997 MC_gene_3849 1 + 133594 133997 -chrVIII 135186 136821 HC_gene_3850 1 + 135186 136821 -chrVIII 138670 140014 HC_gene_3851 34 + 138670 140014 -chrVIII 141750 142306 LC_gene_3852 1 + 141750 142306 -chrVIII 143875 146152 HC_gene_3853 394 + 143875 146152 -chrVIII 146674 147747 HC_gene_3854 6 + 146674 147747 -chrVIII 148686 149213 LC_gene_3855 1 + 148686 149213 -chrVIII 149343 149705 MC_gene_3856 1 + 149343 149705 -chrVIII 150966 151415 HC_gene_3857 2 + 150966 151415 -chrVIII 151610 157558 HC_gene_3858 2 + 151610 157558 -chrVIII 155860 157681 HC_gene_3859 16 + 155860 157681 -chrVIII 159406 160607 HC_gene_3860 448 + 159406 160607 -chrVIII 160727 161707 HC_gene_3861 562 + 160727 161707 -chrVIII 164982 167145 HC_gene_3862 10 + 164982 167145 -chrVIII 167649 168221 MC_gene_3863 1 + 167649 168221 -chrVIII 170719 171632 MC_gene_3864 1 + 170719 171632 -chrVIII 173246 175503 HC_gene_3865 54 + 173246 175503 -chrVIII 175521 176962 HC_gene_3866 1 + 175521 176962 -chrVIII 176991 177180 MC_gene_3867 1 + 176991 177180 -chrVIII 178189 180366 HC_gene_3868 8 + 178189 180366 -chrVIII 180235 182013 HC_gene_3869 7 + 180235 182013 -chrVIII 181955 183876 HC_gene_3870 31 + 181955 183876 -chrVIII 184027 184850 HC_gene_3871 40 + 184027 184850 -chrVIII 187139 187589 MC_gene_3872 1 + 187139 187589 -chrVIII 187906 189133 MC_gene_3873 1 + 187906 189133 -chrVIII 189137 190125 MC_gene_3874 1 + 189137 190125 -chrVIII 189461 190458 MC_gene_3875 2 + 189461 190458 -chrVIII 190501 192839 HC_gene_3876 198 + 190501 192839 -chrVIII 193744 194054 MC_gene_3877 1 + 193744 194054 -chrVIII 195408 198056 HC_gene_3878 32 + 195408 198056 -chrVIII 198650 199061 MC_gene_3879 1 + 198650 199061 -chrVIII 201632 201951 HC_gene_3880 13 + 201632 201951 -chrVIII 203730 204625 HC_gene_3881 1 + 203730 204625 -chrVIII 204552 207444 HC_gene_3882 274 + 204552 207444 -chrVIII 207469 209362 HC_gene_3883 58 + 207469 209362 -chrVIII 209543 210638 HC_gene_3884 386 + 209543 210638 -chrVIII 210809 212242 HC_gene_3885 193 + 210809 212242 -chrVIII 213831 214461 LC_gene_3886 1 + 213831 214461 -chrVIII 218085 218249 HC_gene_3887 3 + 218085 218249 -chrVIII 218799 219556 LC_gene_3888 1 + 218799 219556 -chrVIII 220054 220602 HC_gene_3889 76 + 220054 220602 -chrVIII 220734 221354 HC_gene_3890 181 + 220734 221354 -chrVIII 221431 222925 HC_gene_3891 4 + 221431 222925 -chrVIII 222941 224065 HC_gene_3892 3 + 222941 224065 -chrVIII 229299 233541 HC_gene_3893 369 + 229299 233541 -chrVIII 234790 237746 HC_gene_3894 360 + 234790 237746 -chrVIII 239046 241410 HC_gene_3895 52 + 239046 241410 -chrVIII 241605 242000 HC_gene_3896 1141 + 241605 242000 -chrVIII 242550 245759 HC_gene_3897 63 + 242550 245759 -chrVIII 246163 248450 HC_gene_3898 53 + 246163 248450 -chrVIII 249977 250356 LC_gene_3899 1 + 249977 250356 -chrVIII 251054 252383 HC_gene_3900 24 + 251054 252383 -chrVIII 256113 260280 HC_gene_3901 14 + 256113 260280 -chrVIII 262790 263302 LC_gene_3902 1 + 262790 263302 -chrVIII 267248 268319 HC_gene_3903 238 + 267248 268319 -chrVIII 272169 272496 HC_gene_3904 1 + 272169 272496 -chrVIII 272501 273697 HC_gene_3905 98 + 272501 273697 -chrVIII 273867 276534 HC_gene_3906 22 + 273867 276534 -chrVIII 276741 278027 HC_gene_3907 65 + 276741 278027 -chrVIII 277964 280196 HC_gene_3908 38 + 277964 280196 -chrVIII 280468 281340 HC_gene_3909 174 + 280468 281340 -chrVIII 281466 282664 HC_gene_3910 133 + 281466 282664 -chrVIII 282628 283667 LC_gene_3911 1 + 282628 283667 -chrVIII 284868 285328 LC_gene_3912 1 + 284868 285328 -chrVIII 286370 287091 HC_gene_3913 2 + 286370 287091 -chrVIII 287163 288980 LC_gene_3914 1 + 287163 288980 -chrVIII 290154 290876 LC_gene_3915 1 + 290154 290876 -chrVIII 293951 296649 HC_gene_3916 14 + 293951 296649 -chrVIII 296835 297346 MC_gene_3917 1 + 296835 297346 -chrVIII 298144 299026 LC_gene_3918 1 + 298144 299026 -chrVIII 302250 302615 MC_gene_3919 1 + 302250 302615 -chrVIII 302664 303243 HC_gene_3920 1 + 302664 303243 -chrVIII 305017 305280 HC_gene_3921 1 + 305017 305280 -chrVIII 310440 314115 HC_gene_3922 13 + 310440 314115 -chrVIII 314302 314903 HC_gene_3923 8 + 314302 314903 -chrVIII 314933 315828 MC_gene_3924 3 + 314933 315828 -chrVIII 316386 317214 HC_gene_3925 2 + 316386 317214 -chrVIII 319256 319937 HC_gene_3926 5 + 319256 319937 -chrVIII 320237 323135 HC_gene_3927 24 + 320237 323135 -chrVIII 323369 324581 HC_gene_3928 144 + 323369 324581 -chrVIII 324663 326842 HC_gene_3929 45 + 324663 326842 -chrVIII 328270 330177 HC_gene_3930 194 + 328270 330177 -chrVIII 330283 332160 HC_gene_3931 4 + 330283 332160 -chrVIII 332262 333030 HC_gene_3932 140 + 332262 333030 -chrVIII 333056 336109 HC_gene_3933 20 + 333056 336109 -chrVIII 336130 337906 HC_gene_3934 76 + 336130 337906 -chrVIII 338017 340125 HC_gene_3935 38 + 338017 340125 -chrVIII 341717 342359 HC_gene_3936 42 + 341717 342359 -chrVIII 342315 344486 HC_gene_3937 54 + 342315 344486 -chrVIII 345806 348881 MC_gene_3938 1 + 345806 348881 -chrVIII 348893 349427 HC_gene_3939 8 + 348893 349427 -chrVIII 349568 352516 HC_gene_3940 5 + 349568 352516 -chrVIII 352687 353418 HC_gene_3941 174 + 352687 353418 -chrVIII 353589 354605 HC_gene_3942 76 + 353589 354605 -chrVIII 354798 356274 HC_gene_3943 16 + 354798 356274 -chrVIII 358094 358492 HC_gene_3944 5 + 358094 358492 -chrVIII 360884 362096 HC_gene_3945 78 + 360884 362096 -chrVIII 362070 363001 HC_gene_3946 607 + 362070 363001 -chrVIII 364495 365074 HC_gene_3947 14 + 364495 365074 -chrVIII 365257 366786 LC_gene_3948 1 + 365257 366786 -chrVIII 368078 368518 MC_gene_3949 1 + 368078 368518 -chrVIII 370007 370610 HC_gene_3950 162 + 370007 370610 -chrVIII 371773 373347 HC_gene_3951 50 + 371773 373347 -chrVIII 374669 375091 LC_gene_3952 1 + 374669 375091 -chrVIII 375677 377340 HC_gene_3953 140 + 375677 377340 -chrVIII 377976 380505 HC_gene_3954 1 + 377976 380505 -chrVIII 380562 381380 HC_gene_3955 4 + 380562 381380 -chrVIII 381539 381995 HC_gene_3956 69 + 381539 381995 -chrVIII 383413 384568 HC_gene_3957 88 + 383413 384568 -chrVIII 385013 386839 HC_gene_3958 907 + 385013 386839 -chrVIII 387199 387713 HC_gene_3959 501 + 387199 387713 -chrVIII 387776 388629 LC_gene_3960 1 + 387776 388629 -chrVIII 390274 391995 HC_gene_3961 125 + 390274 391995 -chrVIII 392291 392595 MC_gene_3962 1 + 392291 392595 -chrVIII 393512 394432 HC_gene_3963 116 + 393512 394432 -chrVIII 397187 399140 HC_gene_3964 12 + 397187 399140 -chrVIII 401338 402071 HC_gene_3965 307 + 401338 402071 -chrVIII 402179 402577 LC_gene_3966 1 + 402179 402577 -chrVIII 402920 403405 HC_gene_3967 3 + 402920 403405 -chrVIII 404175 406264 HC_gene_3968 24 + 404175 406264 -chrVIII 407004 411140 HC_gene_3969 5 + 407004 411140 -chrVIII 411077 412350 HC_gene_3970 21 + 411077 412350 -chrVIII 412874 413655 MC_gene_3971 1 + 412874 413655 -chrVIII 417513 420064 HC_gene_3972 6 + 417513 420064 -chrVIII 422692 423579 HC_gene_3973 935 + 422692 423579 -chrVIII 423716 424827 HC_gene_3974 321 + 423716 424827 -chrVIII 429435 429693 HC_gene_3975 9 + 429435 429693 -chrVIII 430206 433617 LC_gene_3976 1 + 430206 433617 -chrVIII 437424 438136 LC_gene_3977 1 + 437424 438136 -chrVIII 439270 440364 HC_gene_3978 34 + 439270 440364 -chrVIII 440342 442143 HC_gene_3979 8 + 440342 442143 -chrVIII 442152 443656 HC_gene_3980 56 + 442152 443656 -chrVIII 443808 445512 HC_gene_3981 205 + 443808 445512 -chrVIII 445702 447722 HC_gene_3982 9 + 445702 447722 -chrVIII 448251 451260 HC_gene_3983 4 + 448251 451260 -chrVIII 451295 452762 HC_gene_3984 17360 + 451295 452762 -chrVIII 452923 453692 HC_gene_3985 104 + 452923 453692 -chrVIII 454106 455640 HC_gene_3986 17 + 454106 455640 -chrVIII 456572 459026 HC_gene_3987 1 + 456572 459026 -chrVIII 459251 461714 HC_gene_3988 4 + 459251 461714 -chrVIII 461682 462054 HC_gene_3989 8 + 461682 462054 -chrVIII 462443 463817 HC_gene_3990 1148 + 462443 463817 -chrVIII 464948 465857 HC_gene_3991 11 + 464948 465857 -chrVIII 467177 467998 HC_gene_3992 148 + 467177 467998 -chrVIII 468182 470981 HC_gene_3993 6 + 468182 470981 -chrVIII 470885 472598 HC_gene_3994 1046 + 470885 472598 -chrVIII 473932 474593 HC_gene_3995 26 + 473932 474593 -chrVIII 475112 475371 LC_gene_3996 1 + 475112 475371 -chrVIII 480953 482017 HC_gene_3997 63 + 480953 482017 -chrVIII 484019 486279 HC_gene_3998 318 + 484019 486279 -chrVIII 486789 487740 HC_gene_3999 92 + 486789 487740 -chrVIII 488607 490488 HC_gene_4000 9 + 488607 490488 -chrVIII 490571 491902 HC_gene_4001 49 + 490571 491902 -chrVIII 491876 493711 HC_gene_4002 160 + 491876 493711 -chrVIII 493877 496446 HC_gene_4003 33 + 493877 496446 -chrVIII 496492 497493 MC_gene_4004 1 + 496492 497493 -chrVIII 497484 499001 LC_gene_4005 1 + 497484 499001 -chrVIII 499063 500151 HC_gene_4006 68 + 499063 500151 -chrVIII 501295 502276 HC_gene_4007 1 + 501295 502276 -chrVIII 502354 504455 HC_gene_4008 6 + 502354 504455 -chrVIII 506112 508794 HC_gene_4009 15 + 506112 508794 -chrVIII 508925 512051 HC_gene_4010 18 + 508925 512051 -chrVIII 512452 514885 HC_gene_4011 25 + 512452 514885 -chrVIII 516655 517180 HC_gene_4012 27 + 516655 517180 -chrVIII 517509 518869 HC_gene_4013 406 + 517509 518869 -chrVIII 518990 520568 HC_gene_4014 33 + 518990 520568 -chrVIII 522166 523059 MC_gene_4015 1 + 522166 523059 -chrVIII 523106 524962 HC_gene_4016 6 + 523106 524962 -chrVIII 528008 528704 HC_gene_4017 4 + 528008 528704 -chrVIII 529559 530559 HC_gene_4018 2 + 529559 530559 -chrVIII 534039 535727 LC_gene_4019 1 + 534039 535727 -chrVIII 541554 543627 MC_gene_4020 1 + 541554 543627 -chrVIII 548952 549652 MC_gene_4021 1 + 548952 549652 -chrVIII 550667 551530 LC_gene_4022 1 + 550667 551530 -chrVIII 552324 553569 HC_gene_4023 2 + 552324 553569 -chrVIII 553699 553983 MC_gene_4024 1 + 553699 553983 -chrVIII 554172 556153 HC_gene_4025 120 + 554172 556153 -chrVIII 557451 562044 LC_gene_4026 1 + 557451 562044 -chrVIII 353 3229 MC_gene_4027 1 - 353 3229 -chrVIII 8188 11026 HC_gene_4028 19 - 8188 11026 -chrVIII 11309 11741 LC_gene_4029 1 - 11309 11741 -chrVIII 11797 12550 LC_gene_4030 1 - 11797 12550 -chrVIII 12780 13267 LC_gene_4031 1 - 12780 13267 -chrVIII 14565 15887 HC_gene_4032 13 - 14565 15887 -chrVIII 18835 21108 HC_gene_4033 26 - 18835 21108 -chrVIII 23486 25545 HC_gene_4034 12 - 23486 25545 -chrVIII 27777 30343 HC_gene_4035 5 - 27777 30343 -chrVIII 31539 32775 HC_gene_4036 4 - 31539 32775 -chrVIII 33037 34189 HC_gene_4037 1129 - 33037 34189 -chrVIII 34512 36045 HC_gene_4038 910 - 34512 36045 -chrVIII 36317 38588 HC_gene_4039 15 - 36317 38588 -chrVIII 38745 39498 HC_gene_4040 76 - 38745 39498 -chrVIII 45687 47988 HC_gene_4041 33 - 45687 47988 -chrVIII 53098 54356 HC_gene_4042 17 - 53098 54356 -chrVIII 54657 55235 MC_gene_4043 1 - 54657 55235 -chrVIII 55494 55814 MC_gene_4044 1 - 55494 55814 -chrVIII 56498 56921 HC_gene_4045 4 - 56498 56921 -chrVIII 57414 59010 HC_gene_4046 1 - 57414 59010 -chrVIII 59091 62596 MC_gene_4047 1 - 59091 62596 -chrVIII 62811 63450 HC_gene_4048 6 - 62811 63450 -chrVIII 64329 65920 HC_gene_4049 79 - 64329 65920 -chrVIII 66114 67541 MC_gene_4050 2 - 66114 67541 -chrVIII 67638 69583 HC_gene_4051 12 - 67638 69583 -chrVIII 69630 70047 LC_gene_4052 1 - 69630 70047 -chrVIII 71884 72210 HC_gene_4053 4 - 71884 72210 -chrVIII 74248 75045 HC_gene_4054 1 - 74248 75045 -chrVIII 76040 77303 HC_gene_4055 13 - 76040 77303 -chrVIII 77315 78348 HC_gene_4056 86 - 77315 78348 -chrVIII 78882 81706 HC_gene_4057 164 - 78882 81706 -chrVIII 81739 83775 HC_gene_4058 5 - 81739 83775 -chrVIII 83651 85179 HC_gene_4059 17 - 83651 85179 -chrVIII 91188 92246 LC_gene_4060 1 - 91188 92246 -chrVIII 92423 94679 HC_gene_4061 21 - 92423 94679 -chrVIII 94987 98038 HC_gene_4062 19 - 94987 98038 -chrVIII 97935 98873 HC_gene_4063 16 - 97935 98873 -chrVIII 100390 102371 HC_gene_4064 94 - 100390 102371 -chrVIII 102487 103598 LC_gene_4065 1 - 102487 103598 -chrVIII 105144 105438 HC_gene_4066 12 - 105144 105438 -chrVIII 107841 108463 MC_gene_4067 1 - 107841 108463 -chrVIII 109939 111324 HC_gene_4068 43 - 109939 111324 -chrVIII 111501 113176 HC_gene_4069 27 - 111501 113176 -chrVIII 113396 115013 HC_gene_4070 138 - 113396 115013 -chrVIII 115477 115936 HC_gene_4071 789 - 115477 115936 -chrVIII 116460 116978 HC_gene_4072 9 - 116460 116978 -chrVIII 117361 118217 LC_gene_4073 1 - 117361 118217 -chrVIII 119806 121833 HC_gene_4074 512 - 119806 121833 -chrVIII 121894 123633 HC_gene_4075 224 - 121894 123633 -chrVIII 124009 125915 HC_gene_4076 129 - 124009 125915 -chrVIII 127703 129286 LC_gene_4077 1 - 127703 129286 -chrVIII 130491 131474 HC_gene_4078 218 - 130491 131474 -chrVIII 131578 132930 HC_gene_4079 1 - 131578 132930 -chrVIII 133392 134189 LC_gene_4080 1 - 133392 134189 -chrVIII 136657 138491 HC_gene_4081 40 - 136657 138491 -chrVIII 139375 141458 HC_gene_4082 289 - 139375 141458 -chrVIII 141808 143592 HC_gene_4083 609 - 141808 143592 -chrVIII 143863 146434 LC_gene_4084 1 - 143863 146434 -chrVIII 146382 147054 MC_gene_4085 2 - 146382 147054 -chrVIII 147670 148711 HC_gene_4086 2934 - 147670 148711 -chrVIII 149166 151232 HC_gene_4087 23 - 149166 151232 -chrVIII 157608 159216 HC_gene_4088 115 - 157608 159216 -chrVIII 160518 161310 MC_gene_4089 1 - 160518 161310 -chrVIII 161580 162052 HC_gene_4090 36 - 161580 162052 -chrVIII 161582 164747 HC_gene_4091 195 - 161582 164747 -chrVIII 164871 167498 HC_gene_4092 28 - 164871 167498 -chrVIII 167591 168575 HC_gene_4093 95 - 167591 168575 -chrVIII 168733 170421 HC_gene_4094 186 - 168733 170421 -chrVIII 170395 173012 HC_gene_4095 9 - 170395 173012 -chrVIII 175407 176805 LC_gene_4096 1 - 175407 176805 -chrVIII 176945 178034 HC_gene_4097 17 - 176945 178034 -chrVIII 179058 179692 MC_gene_4098 1 - 179058 179692 -chrVIII 181078 181721 HC_gene_4099 1 - 181078 181721 -chrVIII 183791 184497 MC_gene_4100 1 - 183791 184497 -chrVIII 184735 186920 HC_gene_4101 82 - 184735 186920 -chrVIII 187058 187697 HC_gene_4102 1324 - 187058 187697 -chrVIII 188906 189875 HC_gene_4103 80 - 188906 189875 -chrVIII 190011 190421 LC_gene_4104 1 - 190011 190421 -chrVIII 192722 193648 HC_gene_4105 119 - 192722 193648 -chrVIII 193812 195210 HC_gene_4106 36 - 193812 195210 -chrVIII 197177 198317 HC_gene_4107 128 - 197177 198317 -chrVIII 198590 201339 HC_gene_4108 55 - 198590 201339 -chrVIII 201626 204250 MC_gene_4109 4 - 201626 204250 -chrVIII 204473 207274 HC_gene_4110 8 - 204473 207274 -chrVIII 207315 207708 MC_gene_4111 1 - 207315 207708 -chrVIII 209654 210183 MC_gene_4112 1 - 209654 210183 -chrVIII 211518 212773 LC_gene_4113 1 - 211518 212773 -chrVIII 213052 214366 LC_gene_4114 1 - 213052 214366 -chrVIII 216821 217675 HC_gene_4115 1 - 216821 217675 -chrVIII 218102 219898 HC_gene_4116 161 - 218102 219898 -chrVIII 221267 222613 HC_gene_4117 31 - 221267 222613 -chrVIII 222816 223780 HC_gene_4118 60 - 222816 223780 -chrVIII 223944 225200 HC_gene_4119 95 - 223944 225200 -chrVIII 225233 227184 HC_gene_4120 482 - 225233 227184 -chrVIII 227413 229081 HC_gene_4121 101 - 227413 229081 -chrVIII 231228 231852 MC_gene_4122 1 - 231228 231852 -chrVIII 233327 234673 HC_gene_4123 82 - 233327 234673 -chrVIII 234857 236045 MC_gene_4124 1 - 234857 236045 -chrVIII 236573 237698 HC_gene_4125 2 - 236573 237698 -chrVIII 238110 238830 MC_gene_4126 1 - 238110 238830 -chrVIII 238863 239273 MC_gene_4127 1 - 238863 239273 -chrVIII 241532 242267 MC_gene_4128 1 - 241532 242267 -chrVIII 245703 246143 LC_gene_4129 1 - 245703 246143 -chrVIII 248368 249685 HC_gene_4130 19 - 248368 249685 -chrVIII 249859 250974 HC_gene_4131 2 - 249859 250974 -chrVIII 251952 253003 HC_gene_4132 1 - 251952 253003 -chrVIII 252187 253382 HC_gene_4133 34 - 252187 253382 -chrVIII 252201 253662 HC_gene_4134 6 - 252201 253662 -chrVIII 253837 255813 HC_gene_4135 2 - 253837 255813 -chrVIII 255922 256399 HC_gene_4136 1 - 255922 256399 -chrVIII 258024 261845 HC_gene_4137 1 - 258024 261845 -chrVIII 262075 262549 LC_gene_4138 1 - 262075 262549 -chrVIII 262725 267040 HC_gene_4139 7 - 262725 267040 -chrVIII 268241 272413 HC_gene_4140 67 - 268241 272413 -chrVIII 272994 273580 LC_gene_4141 1 - 272994 273580 -chrVIII 273808 274561 LC_gene_4142 1 - 273808 274561 -chrVIII 276444 277657 MC_gene_4143 1 - 276444 277657 -chrVIII 279352 280105 MC_gene_4144 1 - 279352 280105 -chrVIII 282461 283331 HC_gene_4145 999 - 282461 283331 -chrVIII 283526 284634 HC_gene_4146 30 - 283526 284634 -chrVIII 284731 286798 HC_gene_4147 8 - 284731 286798 -chrVIII 286926 288887 HC_gene_4148 849 - 286926 288887 -chrVIII 288917 289627 HC_gene_4149 2 - 288917 289627 -chrVIII 290781 292667 HC_gene_4150 89 - 290781 292667 -chrVIII 292603 292894 HC_gene_4151 2 - 292603 292894 -chrVIII 294572 296787 MC_gene_4152 1 - 294572 296787 -chrVIII 297258 298627 HC_gene_4153 109 - 297258 298627 -chrVIII 299001 302010 HC_gene_4154 29 - 299001 302010 -chrVIII 313855 314720 HC_gene_4155 38 - 313855 314720 -chrVIII 314629 316001 HC_gene_4156 18 - 314629 316001 -chrVIII 317373 319831 MC_gene_4157 1 - 317373 319831 -chrVIII 326628 328095 HC_gene_4158 112 - 326628 328095 -chrVIII 328955 330102 LC_gene_4159 1 - 328955 330102 -chrVIII 332557 332873 MC_gene_4160 1 - 332557 332873 -chrVIII 333506 335904 HC_gene_4161 52 - 333506 335904 -chrVIII 335822 337709 LC_gene_4162 1 - 335822 337709 -chrVIII 339143 341541 HC_gene_4163 50 - 339143 341541 -chrVIII 344263 345657 HC_gene_4164 20 - 344263 345657 -chrVIII 347830 349352 MC_gene_4165 1 - 347830 349352 -chrVIII 349295 349632 MC_gene_4166 1 - 349295 349632 -chrVIII 351829 352401 LC_gene_4167 1 - 351829 352401 -chrVIII 353001 353367 MC_gene_4168 1 - 353001 353367 -chrVIII 354138 354584 MC_gene_4169 1 - 354138 354584 -chrVIII 356454 358120 HC_gene_4170 12 - 356454 358120 -chrVIII 358396 358566 MC_gene_4171 1 - 358396 358566 -chrVIII 358698 359589 LC_gene_4172 1 - 358698 359589 -chrVIII 360797 361368 MC_gene_4173 1 - 360797 361368 -chrVIII 362002 364234 HC_gene_4174 25 - 362002 364234 -chrVIII 364841 368135 HC_gene_4175 15 - 364841 368135 -chrVIII 368381 369837 HC_gene_4176 128 - 368381 369837 -chrVIII 369959 371844 HC_gene_4177 128 - 369959 371844 -chrVIII 372587 374431 HC_gene_4178 164 - 372587 374431 -chrVIII 374558 375319 HC_gene_4179 4 - 374558 375319 -chrVIII 377246 377719 HC_gene_4180 127 - 377246 377719 -chrVIII 377894 379211 HC_gene_4181 3 - 377894 379211 -chrVIII 380418 381020 HC_gene_4182 1 - 380418 381020 -chrVIII 381702 382318 HC_gene_4183 2359 - 381702 382318 -chrVIII 382378 382775 HC_gene_4184 1 - 382378 382775 -chrVIII 383328 384769 HC_gene_4185 4 - 383328 384769 -chrVIII 386349 386979 HC_gene_4186 25 - 386349 386979 -chrVIII 387606 388758 HC_gene_4187 47 - 387606 388758 -chrVIII 389115 389725 MC_gene_4188 1 - 389115 389725 -chrVIII 389197 390014 MC_gene_4189 1 - 389197 390014 -chrVIII 391773 392190 LC_gene_4190 1 - 391773 392190 -chrVIII 392275 393319 HC_gene_4191 108 - 392275 393319 -chrVIII 394290 396792 HC_gene_4192 32 - 394290 396792 -chrVIII 399072 400993 HC_gene_4193 25 - 399072 400993 -chrVIII 401721 402700 HC_gene_4194 7 - 401721 402700 -chrVIII 406175 406789 MC_gene_4195 1 - 406175 406789 -chrVIII 410820 412435 HC_gene_4196 24 - 410820 412435 -chrVIII 413536 415752 HC_gene_4197 15 - 413536 415752 -chrVIII 418866 420090 MC_gene_4198 1 - 418866 420090 -chrVIII 420220 420989 HC_gene_4199 46 - 420220 420989 -chrVIII 420280 421291 HC_gene_4200 5 - 420280 421291 -chrVIII 422318 422421 HC_gene_4201 3 - 422318 422421 -chrVIII 423052 423464 LC_gene_4202 1 - 423052 423464 -chrVIII 424492 429271 HC_gene_4203 1 - 424492 429271 -chrVIII 429600 431772 HC_gene_4204 7 - 429600 431772 -chrVIII 432021 432815 MC_gene_4205 1 - 432021 432815 -chrVIII 433166 433992 MC_gene_4206 1 - 433166 433992 -chrVIII 433379 434434 MC_gene_4207 1 - 433379 434434 -chrVIII 434905 437034 HC_gene_4208 5 - 434905 437034 -chrVIII 437060 439153 HC_gene_4209 24 - 437060 439153 -chrVIII 439576 440155 LC_gene_4210 1 - 439576 440155 -chrVIII 441616 441938 LC_gene_4211 1 - 441616 441938 -chrVIII 443062 443512 LC_gene_4212 1 - 443062 443512 -chrVIII 449527 450405 MC_gene_4213 1 - 449527 450405 -chrVIII 449984 450651 MC_gene_4214 1 - 449984 450651 -chrVIII 451724 452675 LC_gene_4215 1 - 451724 452675 -chrVIII 453803 454672 LC_gene_4216 1 - 453803 454672 -chrVIII 454780 455583 MC_gene_4217 2 - 454780 455583 -chrVIII 456409 456816 MC_gene_4218 1 - 456409 456816 -chrVIII 456515 457661 MC_gene_4219 1 - 456515 457661 -chrVIII 459003 459534 LC_gene_4220 1 - 459003 459534 -chrVIII 460780 461458 MC_gene_4221 1 - 460780 461458 -chrVIII 461726 462259 MC_gene_4222 1 - 461726 462259 -chrVIII 463709 464824 HC_gene_4223 18 - 463709 464824 -chrVIII 464894 465500 HC_gene_4224 13 - 464894 465500 -chrVIII 466295 466837 LC_gene_4225 1 - 466295 466837 -chrVIII 467415 468034 MC_gene_4226 1 - 467415 468034 -chrVIII 469864 470543 MC_gene_4227 1 - 469864 470543 -chrVIII 470855 472488 LC_gene_4228 1 - 470855 472488 -chrVIII 473574 473950 LC_gene_4229 1 - 473574 473950 -chrVIII 474439 474800 HC_gene_4230 22 - 474439 474800 -chrVIII 475884 480701 HC_gene_4231 2 - 475884 480701 -chrVIII 481291 484587 HC_gene_4232 62 - 481291 484587 -chrVIII 486042 486655 HC_gene_4233 115 - 486042 486655 -chrVIII 486740 487499 HC_gene_4234 1 - 486740 487499 -chrVIII 487647 488269 HC_gene_4235 2065 - 487647 488269 -chrVIII 488347 489074 MC_gene_4236 1 - 488347 489074 -chrVIII 490022 491045 MC_gene_4237 1 - 490022 491045 -chrVIII 496184 497265 HC_gene_4238 44 - 496184 497265 -chrVIII 497398 498880 HC_gene_4239 59 - 497398 498880 -chrVIII 499798 501179 HC_gene_4240 172 - 499798 501179 -chrVIII 501867 502259 MC_gene_4241 1 - 501867 502259 -chrVIII 502668 503538 LC_gene_4242 1 - 502668 503538 -chrVIII 504335 505570 HC_gene_4243 2221 - 504335 505570 -chrVIII 507709 508661 LC_gene_4244 1 - 507709 508661 -chrVIII 511948 512126 HC_gene_4245 2 - 511948 512126 -chrVIII 514781 516526 HC_gene_4246 26 - 514781 516526 -chrVIII 516618 517250 LC_gene_4247 1 - 516618 517250 -chrVIII 518760 519202 MC_gene_4248 1 - 518760 519202 -chrVIII 519292 520279 HC_gene_4249 14 - 519292 520279 -chrVIII 520484 521844 HC_gene_4250 7 - 520484 521844 -chrVIII 523076 524944 MC_gene_4251 1 - 523076 524944 -chrVIII 528835 529834 HC_gene_4252 5 - 528835 529834 -chrVIII 530493 533465 LC_gene_4253 1 - 530493 533465 -chrVIII 540330 543468 LC_gene_4254 1 - 540330 543468 -chrVIII 543576 549400 HC_gene_4255 9 - 543576 549400 -chrIX 19486 21332 LC_gene_4256 1 + 19486 21332 -chrIX 22591 28590 HC_gene_4257 73 + 22591 28590 -chrIX 28884 30374 HC_gene_4258 4 + 28884 30374 -chrIX 31303 32663 HC_gene_4259 2 + 31303 32663 -chrIX 34896 37309 HC_gene_4260 11 + 34896 37309 -chrIX 37437 39205 HC_gene_4261 110 + 37437 39205 -chrIX 39421 41509 HC_gene_4262 54 + 39421 41509 -chrIX 41784 46068 HC_gene_4263 2 + 41784 46068 -chrIX 46188 46931 HC_gene_4264 116 + 46188 46931 -chrIX 47671 48149 HC_gene_4265 158 + 47671 48149 -chrIX 48098 51515 HC_gene_4266 3 + 48098 51515 -chrIX 53006 53899 LC_gene_4267 1 + 53006 53899 -chrIX 53997 54566 MC_gene_4268 1 + 53997 54566 -chrIX 55175 56434 HC_gene_4269 42 + 55175 56434 -chrIX 56566 57382 HC_gene_4270 58 + 56566 57382 -chrIX 62648 63046 MC_gene_4271 1 + 62648 63046 -chrIX 68691 69594 HC_gene_4272 4574 + 68691 69594 -chrIX 71611 74190 LC_gene_4273 1 + 71611 74190 -chrIX 76344 77337 MC_gene_4274 1 + 76344 77337 -chrIX 77538 80355 HC_gene_4275 39 + 77538 80355 -chrIX 83263 85040 HC_gene_4276 240 + 83263 85040 -chrIX 85254 87969 HC_gene_4277 24 + 85254 87969 -chrIX 87994 88574 MC_gene_4278 1 + 87994 88574 -chrIX 88184 88703 MC_gene_4279 1 + 88184 88703 -chrIX 88913 89360 MC_gene_4280 1 + 88913 89360 -chrIX 92577 93156 MC_gene_4281 1 + 92577 93156 -chrIX 93353 95012 HC_gene_4282 144 + 93353 95012 -chrIX 96854 98422 HC_gene_4283 39 + 96854 98422 -chrIX 100003 100314 HC_gene_4284 2 + 100003 100314 -chrIX 102178 102504 LC_gene_4285 1 + 102178 102504 -chrIX 102644 104452 HC_gene_4286 1 + 102644 104452 -chrIX 105166 105835 HC_gene_4287 51 + 105166 105835 -chrIX 113728 117134 HC_gene_4288 13 + 113728 117134 -chrIX 117930 122212 HC_gene_4289 85 + 117930 122212 -chrIX 122412 125991 HC_gene_4290 63 + 122412 125991 -chrIX 126144 127199 HC_gene_4291 201 + 126144 127199 -chrIX 127438 131818 HC_gene_4292 729 + 127438 131818 -chrIX 132217 134178 HC_gene_4293 103 + 132217 134178 -chrIX 135261 136195 HC_gene_4294 17 + 135261 136195 -chrIX 136401 137217 HC_gene_4295 5 + 136401 137217 -chrIX 137208 138247 LC_gene_4296 1 + 137208 138247 -chrIX 138574 139188 LC_gene_4297 1 + 138574 139188 -chrIX 139437 141005 HC_gene_4298 274 + 139437 141005 -chrIX 141271 141775 LC_gene_4299 1 + 141271 141775 -chrIX 142181 142521 LC_gene_4300 1 + 142181 142521 -chrIX 142889 144211 HC_gene_4301 234 + 142889 144211 -chrIX 147189 148830 LC_gene_4302 1 + 147189 148830 -chrIX 150306 151294 MC_gene_4303 1 + 150306 151294 -chrIX 150525 151490 MC_gene_4304 1 + 150525 151490 -chrIX 151561 155988 HC_gene_4305 370 + 151561 155988 -chrIX 156022 157304 HC_gene_4306 55 + 156022 157304 -chrIX 160766 163004 HC_gene_4307 51 + 160766 163004 -chrIX 164464 165183 MC_gene_4308 1 + 164464 165183 -chrIX 166397 167532 HC_gene_4309 21 + 166397 167532 -chrIX 170033 170401 MC_gene_4310 1 + 170033 170401 -chrIX 171699 173102 HC_gene_4311 47 + 171699 173102 -chrIX 173865 174645 MC_gene_4312 1 + 173865 174645 -chrIX 175035 175309 MC_gene_4313 1 + 175035 175309 -chrIX 175264 176228 MC_gene_4314 1 + 175264 176228 -chrIX 175346 176385 MC_gene_4315 1 + 175346 176385 -chrIX 177120 177517 HC_gene_4316 1 + 177120 177517 -chrIX 177553 179788 HC_gene_4317 2 + 177553 179788 -chrIX 180417 182147 HC_gene_4318 14 + 180417 182147 -chrIX 183775 186441 HC_gene_4319 5 + 183775 186441 -chrIX 187923 188972 MC_gene_4320 2 + 187923 188972 -chrIX 188986 191068 HC_gene_4321 6 + 188986 191068 -chrIX 193455 195389 HC_gene_4322 44 + 193455 195389 -chrIX 196280 196573 HC_gene_4323 1 + 196280 196573 -chrIX 196743 197464 LC_gene_4324 1 + 196743 197464 -chrIX 199610 200530 MC_gene_4325 1 + 199610 200530 -chrIX 202250 202926 HC_gene_4326 1 + 202250 202926 -chrIX 205126 205972 MC_gene_4327 1 + 205126 205972 -chrIX 207587 210569 MC_gene_4328 1 + 207587 210569 -chrIX 212454 214783 HC_gene_4329 1232 + 212454 214783 -chrIX 216251 217824 HC_gene_4330 286 + 216251 217824 -chrIX 220957 221114 HC_gene_4331 2 + 220957 221114 -chrIX 222869 224912 HC_gene_4332 6 + 222869 224912 -chrIX 225276 225642 MC_gene_4333 1 + 225276 225642 -chrIX 227771 228574 HC_gene_4334 2 + 227771 228574 -chrIX 229759 230349 MC_gene_4335 1 + 229759 230349 -chrIX 232435 232884 MC_gene_4336 1 + 232435 232884 -chrIX 233011 233634 LC_gene_4337 1 + 233011 233634 -chrIX 235740 236098 LC_gene_4338 1 + 235740 236098 -chrIX 238080 238944 LC_gene_4339 1 + 238080 238944 -chrIX 242005 242811 HC_gene_4340 121 + 242005 242811 -chrIX 243648 244000 HC_gene_4341 5 + 243648 244000 -chrIX 244320 244769 LC_gene_4342 1 + 244320 244769 -chrIX 245709 245972 MC_gene_4343 1 + 245709 245972 -chrIX 247216 247926 HC_gene_4344 1 + 247216 247926 -chrIX 249651 252156 HC_gene_4345 168 + 249651 252156 -chrIX 253658 254723 LC_gene_4346 1 + 253658 254723 -chrIX 255085 256027 HC_gene_4347 2544 + 255085 256027 -chrIX 257816 258528 HC_gene_4348 6 + 257816 258528 -chrIX 257835 258821 HC_gene_4349 27 + 257835 258821 -chrIX 258597 259907 HC_gene_4350 48 + 258597 259907 -chrIX 260150 260980 HC_gene_4351 49 + 260150 260980 -chrIX 261130 265114 HC_gene_4352 16 + 261130 265114 -chrIX 268202 268480 HC_gene_4353 1 + 268202 268480 -chrIX 268618 270673 HC_gene_4354 28 + 268618 270673 -chrIX 270821 271090 HC_gene_4355 3 + 270821 271090 -chrIX 271061 273297 HC_gene_4356 13 + 271061 273297 -chrIX 274521 274981 LC_gene_4357 1 + 274521 274981 -chrIX 276496 277620 HC_gene_4358 251 + 276496 277620 -chrIX 277694 278232 HC_gene_4359 198 + 277694 278232 -chrIX 278211 280081 HC_gene_4360 105 + 278211 280081 -chrIX 283098 284621 MC_gene_4361 1 + 283098 284621 -chrIX 283360 284720 MC_gene_4362 1 + 283360 284720 -chrIX 285514 287751 HC_gene_4363 39 + 285514 287751 -chrIX 289289 290671 HC_gene_4364 8 + 289289 290671 -chrIX 292462 295880 HC_gene_4365 11 + 292462 295880 -chrIX 300428 301576 LC_gene_4366 1 + 300428 301576 -chrIX 301937 303669 HC_gene_4367 3 + 301937 303669 -chrIX 304380 305078 MC_gene_4368 1 + 304380 305078 -chrIX 306361 307438 LC_gene_4369 1 + 306361 307438 -chrIX 308202 308594 LC_gene_4370 1 + 308202 308594 -chrIX 310123 310701 LC_gene_4371 1 + 310123 310701 -chrIX 311054 312692 HC_gene_4372 86 + 311054 312692 -chrIX 312868 314538 HC_gene_4373 150 + 312868 314538 -chrIX 315071 316309 HC_gene_4374 63 + 315071 316309 -chrIX 316742 318022 HC_gene_4375 3650 + 316742 318022 -chrIX 318187 319474 MC_gene_4376 1 + 318187 319474 -chrIX 321428 322371 HC_gene_4377 218 + 321428 322371 -chrIX 323049 324206 HC_gene_4378 1 + 323049 324206 -chrIX 324613 325539 MC_gene_4379 1 + 324613 325539 -chrIX 325950 328104 HC_gene_4380 27 + 325950 328104 -chrIX 329815 331634 MC_gene_4381 1 + 329815 331634 -chrIX 333399 334665 HC_gene_4382 290 + 333399 334665 -chrIX 334843 335718 HC_gene_4383 169 + 334843 335718 -chrIX 338281 341664 HC_gene_4384 49 + 338281 341664 -chrIX 342488 342979 HC_gene_4385 303 + 342488 342979 -chrIX 343854 345430 HC_gene_4386 8 + 343854 345430 -chrIX 345557 348566 HC_gene_4387 42 + 345557 348566 -chrIX 349081 350091 HC_gene_4388 44 + 349081 350091 -chrIX 350271 350607 HC_gene_4389 303 + 350271 350607 -chrIX 353879 355511 HC_gene_4390 12 + 353879 355511 -chrIX 357150 357404 HC_gene_4391 18 + 357150 357404 -chrIX 360870 362997 HC_gene_4392 24 + 360870 362997 -chrIX 363208 364638 HC_gene_4393 75 + 363208 364638 -chrIX 364842 365412 HC_gene_4394 50 + 364842 365412 -chrIX 365489 366471 LC_gene_4395 1 + 365489 366471 -chrIX 370676 373107 HC_gene_4396 8 + 370676 373107 -chrIX 374471 375309 HC_gene_4397 33 + 374471 375309 -chrIX 375361 377289 MC_gene_4398 3 + 375361 377289 -chrIX 378460 379881 HC_gene_4399 101 + 378460 379881 -chrIX 381068 383595 MC_gene_4400 8 + 381068 383595 -chrIX 384228 385817 HC_gene_4401 51 + 384228 385817 -chrIX 387035 388459 HC_gene_4402 5 + 387035 388459 -chrIX 389416 390431 LC_gene_4403 1 + 389416 390431 -chrIX 397256 398447 HC_gene_4404 40 + 397256 398447 -chrIX 398701 399358 HC_gene_4405 258 + 398701 399358 -chrIX 399757 402760 HC_gene_4406 25 + 399757 402760 -chrIX 403640 404893 HC_gene_4407 14 + 403640 404893 -chrIX 405004 406281 MC_gene_4408 1 + 405004 406281 -chrIX 410020 410498 HC_gene_4409 11 + 410020 410498 -chrIX 410698 411784 HC_gene_4410 8 + 410698 411784 -chrIX 412262 413058 MC_gene_4411 1 + 412262 413058 -chrIX 415068 415315 LC_gene_4412 1 + 415068 415315 -chrIX 416069 419528 HC_gene_4413 15 + 416069 419528 -chrIX 419773 420329 MC_gene_4414 1 + 419773 420329 -chrIX 421026 421918 HC_gene_4415 31 + 421026 421918 -chrIX 423062 423768 HC_gene_4416 545 + 423062 423768 -chrIX 424726 425074 MC_gene_4417 1 + 424726 425074 -chrIX 425304 425706 MC_gene_4418 1 + 425304 425706 -chrIX 425829 426301 MC_gene_4419 1 + 425829 426301 -chrIX 429684 430442 HC_gene_4420 1 + 429684 430442 -chrIX 431241 433360 LC_gene_4421 1 + 431241 433360 -chrIX 467 4368 LC_gene_4422 1 - 467 4368 -chrIX 20350 21822 MC_gene_4423 1 - 20350 21822 -chrIX 22832 26154 MC_gene_4424 1 - 22832 26154 -chrIX 28504 28817 MC_gene_4425 1 - 28504 28817 -chrIX 30316 31327 HC_gene_4426 42 - 30316 31327 -chrIX 33558 34976 HC_gene_4427 62 - 33558 34976 -chrIX 35113 35925 HC_gene_4428 16 - 35113 35925 -chrIX 36197 37267 LC_gene_4429 1 - 36197 37267 -chrIX 39072 39439 HC_gene_4430 6 - 39072 39439 -chrIX 40084 41468 MC_gene_4431 1 - 40084 41468 -chrIX 45122 45923 MC_gene_4432 1 - 45122 45923 -chrIX 46739 47552 HC_gene_4433 131 - 46739 47552 -chrIX 51412 53185 HC_gene_4434 6 - 51412 53185 -chrIX 53833 55047 HC_gene_4435 86 - 53833 55047 -chrIX 56331 57160 MC_gene_4436 1 - 56331 57160 -chrIX 57287 60840 HC_gene_4437 16 - 57287 60840 -chrIX 60695 62760 HC_gene_4438 2 - 60695 62760 -chrIX 62890 68210 HC_gene_4439 42 - 62890 68210 -chrIX 69519 73632 HC_gene_4440 17 - 69519 73632 -chrIX 73965 76130 HC_gene_4441 7 - 73965 76130 -chrIX 75865 77327 HC_gene_4442 90 - 75865 77327 -chrIX 80253 83069 HC_gene_4443 31 - 80253 83069 -chrIX 83044 84736 LC_gene_4444 1 - 83044 84736 -chrIX 84912 85904 MC_gene_4445 1 - 84912 85904 -chrIX 87837 88393 MC_gene_4446 1 - 87837 88393 -chrIX 88610 89726 HC_gene_4447 356 - 88610 89726 -chrIX 89867 92838 HC_gene_4448 11 - 89867 92838 -chrIX 93083 93764 HC_gene_4449 5 - 93083 93764 -chrIX 94907 96434 HC_gene_4450 50 - 94907 96434 -chrIX 97146 98292 MC_gene_4451 1 - 97146 98292 -chrIX 98303 99435 HC_gene_4452 3032 - 98303 99435 -chrIX 100656 102311 HC_gene_4453 26 - 100656 102311 -chrIX 105705 109690 HC_gene_4454 2 - 105705 109690 -chrIX 110972 112939 MC_gene_4455 1 - 110972 112939 -chrIX 113651 116100 LC_gene_4456 1 - 113651 116100 -chrIX 116935 117669 HC_gene_4457 163 - 116935 117669 -chrIX 125431 125920 MC_gene_4458 1 - 125431 125920 -chrIX 125873 126935 LC_gene_4459 1 - 125873 126935 -chrIX 127037 127544 HC_gene_4460 1 - 127037 127544 -chrIX 127421 127750 HC_gene_4461 1 - 127421 127750 -chrIX 128834 129786 MC_gene_4462 1 - 128834 129786 -chrIX 132104 135299 HC_gene_4463 1 - 132104 135299 -chrIX 135481 136037 MC_gene_4464 1 - 135481 136037 -chrIX 136127 138079 HC_gene_4465 32 - 136127 138079 -chrIX 139157 140569 LC_gene_4466 1 - 139157 140569 -chrIX 140492 141636 HC_gene_4467 170 - 140492 141636 -chrIX 144071 146262 HC_gene_4468 14 - 144071 146262 -chrIX 147581 148889 HC_gene_4469 2 - 147581 148889 -chrIX 148975 150142 HC_gene_4470 67 - 148975 150142 -chrIX 150491 151350 MC_gene_4471 1 - 150491 151350 -chrIX 154234 154818 HC_gene_4472 46 - 154234 154818 -chrIX 154863 155026 MC_gene_4473 1 - 154863 155026 -chrIX 155088 155862 HC_gene_4474 3 - 155088 155862 -chrIX 157112 160253 HC_gene_4475 61 - 157112 160253 -chrIX 160813 162509 LC_gene_4476 1 - 160813 162509 -chrIX 163027 165930 HC_gene_4477 16 - 163027 165930 -chrIX 167290 169661 HC_gene_4478 34 - 167290 169661 -chrIX 169903 171536 HC_gene_4479 15 - 169903 171536 -chrIX 172225 173631 HC_gene_4480 44 - 172225 173631 -chrIX 175200 177288 MC_gene_4481 2 - 175200 177288 -chrIX 177375 179534 LC_gene_4482 1 - 177375 179534 -chrIX 179672 180249 HC_gene_4483 79 - 179672 180249 -chrIX 181963 183162 HC_gene_4484 36 - 181963 183162 -chrIX 185958 187675 HC_gene_4485 1078 - 185958 187675 -chrIX 187625 188860 HC_gene_4486 52 - 187625 188860 -chrIX 190917 193231 HC_gene_4487 49 - 190917 193231 -chrIX 195298 196308 HC_gene_4488 18 - 195298 196308 -chrIX 197173 197454 MC_gene_4489 1 - 197173 197454 -chrIX 197857 199477 HC_gene_4490 87 - 197857 199477 -chrIX 199566 200194 HC_gene_4491 59 - 199566 200194 -chrIX 200432 202091 HC_gene_4492 28 - 200432 202091 -chrIX 202187 203302 HC_gene_4493 6 - 202187 203302 -chrIX 203329 204994 HC_gene_4494 49 - 203329 204994 -chrIX 205311 207102 MC_gene_4495 1 - 205311 207102 -chrIX 210883 212027 HC_gene_4496 57 - 210883 212027 -chrIX 214672 215955 HC_gene_4497 63 - 214672 215955 -chrIX 216104 216490 HC_gene_4498 28 - 216104 216490 -chrIX 217753 220763 HC_gene_4499 367 - 217753 220763 -chrIX 221026 222540 HC_gene_4500 102 - 221026 222540 -chrIX 222552 224211 MC_gene_4501 1 - 222552 224211 -chrIX 222715 225208 MC_gene_4502 1 - 222715 225208 -chrIX 225801 226257 LC_gene_4503 1 - 225801 226257 -chrIX 226494 230028 HC_gene_4504 18 - 226494 230028 -chrIX 230143 231135 HC_gene_4505 69 - 230143 231135 -chrIX 231391 232405 HC_gene_4506 1658 - 231391 232405 -chrIX 232796 235533 HC_gene_4507 16 - 232796 235533 -chrIX 235664 237820 HC_gene_4508 13 - 235664 237820 -chrIX 237961 240893 MC_gene_4509 2 - 237961 240893 -chrIX 241174 241815 HC_gene_4510 196 - 241174 241815 -chrIX 242633 243793 MC_gene_4511 5 - 242633 243793 -chrIX 243925 244501 HC_gene_4512 344 - 243925 244501 -chrIX 244623 245579 HC_gene_4513 21 - 244623 245579 -chrIX 245940 247455 MC_gene_4514 3 - 245940 247455 -chrIX 247754 248464 MC_gene_4515 1 - 247754 248464 -chrIX 248780 249075 HC_gene_4516 3 - 248780 249075 -chrIX 251931 252985 MC_gene_4517 1 - 251931 252985 -chrIX 251967 253858 MC_gene_4518 3 - 251967 253858 -chrIX 253870 254726 MC_gene_4519 1 - 253870 254726 -chrIX 255934 257095 HC_gene_4520 3182 - 255934 257095 -chrIX 257707 258336 HC_gene_4521 597 - 257707 258336 -chrIX 258756 259241 MC_gene_4522 1 - 258756 259241 -chrIX 259752 260397 MC_gene_4523 1 - 259752 260397 -chrIX 260095 260874 MC_gene_4524 1 - 260095 260874 -chrIX 264929 267842 HC_gene_4525 53 - 264929 267842 -chrIX 266116 267844 HC_gene_4526 1 - 266116 267844 -chrIX 269200 270682 LC_gene_4527 1 - 269200 270682 -chrIX 270944 271496 MC_gene_4528 1 - 270944 271496 -chrIX 272778 273873 HC_gene_4529 94 - 272778 273873 -chrIX 273970 274947 HC_gene_4530 422 - 273970 274947 -chrIX 274980 276331 MC_gene_4531 1 - 274980 276331 -chrIX 277510 278259 LC_gene_4532 1 - 277510 278259 -chrIX 279978 282891 HC_gene_4533 13 - 279978 282891 -chrIX 283020 285020 MC_gene_4534 1 - 283020 285020 -chrIX 287434 289030 HC_gene_4535 117 - 287434 289030 -chrIX 289172 290103 HC_gene_4536 247 - 289172 290103 -chrIX 290229 291778 HC_gene_4537 118 - 290229 291778 -chrIX 295851 299022 HC_gene_4538 20 - 295851 299022 -chrIX 299331 300066 HC_gene_4539 9 - 299331 300066 -chrIX 300444 301363 HC_gene_4540 13 - 300444 301363 -chrIX 303591 307966 HC_gene_4541 213 - 303591 307966 -chrIX 308489 310593 HC_gene_4542 48 - 308489 310593 -chrIX 311842 312560 LC_gene_4543 1 - 311842 312560 -chrIX 313896 314908 HC_gene_4544 61 - 313896 314908 -chrIX 318101 321036 HC_gene_4545 3 - 318101 321036 -chrIX 321618 321970 MC_gene_4546 1 - 321618 321970 -chrIX 324183 324360 LC_gene_4547 1 - 324183 324360 -chrIX 325003 325606 HC_gene_4548 69 - 325003 325606 -chrIX 328007 332534 HC_gene_4549 8 - 328007 332534 -chrIX 334507 336241 HC_gene_4550 61 - 334507 336241 -chrIX 336889 338200 HC_gene_4551 6 - 336889 338200 -chrIX 338367 340960 MC_gene_4552 1 - 338367 340960 -chrIX 342006 342306 MC_gene_4553 1 - 342006 342306 -chrIX 342831 343854 HC_gene_4554 53 - 342831 343854 -chrIX 345246 345421 MC_gene_4555 1 - 345246 345421 -chrIX 347687 348517 HC_gene_4556 41 - 347687 348517 -chrIX 348731 349714 LC_gene_4557 1 - 348731 349714 -chrIX 350433 353627 HC_gene_4558 32 - 350433 353627 -chrIX 355809 356961 HC_gene_4559 77 - 355809 356961 -chrIX 357205 358477 HC_gene_4560 5 - 357205 358477 -chrIX 357302 360480 HC_gene_4561 8 - 357302 360480 -chrIX 365371 369943 HC_gene_4562 63 - 365371 369943 -chrIX 370663 371170 LC_gene_4563 1 - 370663 371170 -chrIX 373005 374366 HC_gene_4564 38 - 373005 374366 -chrIX 377175 378262 HC_gene_4565 84 - 377175 378262 -chrIX 379835 381722 MC_gene_4566 1 - 379835 381722 -chrIX 381732 382140 MC_gene_4567 1 - 381732 382140 -chrIX 383359 384101 HC_gene_4568 69 - 383359 384101 -chrIX 385685 386626 HC_gene_4569 33 - 385685 386626 -chrIX 393649 395944 MC_gene_4570 2 - 393649 395944 -chrIX 395823 397106 MC_gene_4571 1 - 395823 397106 -chrIX 399219 399542 MC_gene_4572 1 - 399219 399542 -chrIX 399692 401951 LC_gene_4573 1 - 399692 401951 -chrIX 402649 403500 HC_gene_4574 47 - 402649 403500 -chrIX 404778 406008 HC_gene_4575 57 - 404778 406008 -chrIX 406104 407967 HC_gene_4576 13 - 406104 407967 -chrIX 408364 410463 MC_gene_4577 1 - 408364 410463 -chrIX 410198 410731 MC_gene_4578 1 - 410198 410731 -chrIX 410426 411119 MC_gene_4579 1 - 410426 411119 -chrIX 411979 412811 HC_gene_4580 22 - 411979 412811 -chrIX 412959 414786 HC_gene_4581 12 - 412959 414786 -chrIX 414902 415676 HC_gene_4582 27 - 414902 415676 -chrIX 419449 420772 HC_gene_4583 483 - 419449 420772 -chrIX 419541 422892 HC_gene_4584 176 - 419541 422892 -chrIX 423685 424544 HC_gene_4585 133 - 423685 424544 -chrIX 427324 429166 MC_gene_4586 1 - 427324 429166 -chrIX 430397 432242 HC_gene_4587 4 - 430397 432242 -chrX 20474 21297 LC_gene_4588 1 + 20474 21297 -chrX 21954 22717 HC_gene_4589 26 + 21954 22717 -chrX 23124 23864 HC_gene_4590 193 + 23124 23864 -chrX 26943 29392 HC_gene_4591 14 + 26943 29392 -chrX 31822 33452 HC_gene_4592 47 + 31822 33452 -chrX 34288 36162 LC_gene_4593 1 + 34288 36162 -chrX 36768 37817 HC_gene_4594 91 + 36768 37817 -chrX 37911 39026 HC_gene_4595 10 + 37911 39026 -chrX 39233 40064 HC_gene_4596 1 + 39233 40064 -chrX 41517 41901 LC_gene_4597 1 + 41517 41901 -chrX 47695 48499 MC_gene_4598 1 + 47695 48499 -chrX 49218 50124 LC_gene_4599 1 + 49218 50124 -chrX 50232 50669 HC_gene_4600 7 + 50232 50669 -chrX 53347 54419 HC_gene_4601 21 + 53347 54419 -chrX 54375 56408 HC_gene_4602 8 + 54375 56408 -chrX 58596 58981 MC_gene_4603 1 + 58596 58981 -chrX 59323 59822 MC_gene_4604 1 + 59323 59822 -chrX 60820 63606 HC_gene_4605 28 + 60820 63606 -chrX 63761 67645 HC_gene_4606 55 + 63761 67645 -chrX 67810 68888 HC_gene_4607 4 + 67810 68888 -chrX 69298 71013 HC_gene_4608 32 + 69298 71013 -chrX 71345 72643 HC_gene_4609 26 + 71345 72643 -chrX 72727 73134 LC_gene_4610 1 + 72727 73134 -chrX 73755 74854 HC_gene_4611 350 + 73755 74854 -chrX 75905 76614 HC_gene_4612 6535 + 75905 76614 -chrX 76852 77234 MC_gene_4613 1 + 76852 77234 -chrX 77997 79482 MC_gene_4614 1 + 77997 79482 -chrX 78569 80087 MC_gene_4615 1 + 78569 80087 -chrX 80124 81969 HC_gene_4616 120 + 80124 81969 -chrX 83208 83897 HC_gene_4617 168 + 83208 83897 -chrX 83991 85444 HC_gene_4618 52 + 83991 85444 -chrX 85644 87580 HC_gene_4619 3 + 85644 87580 -chrX 88717 89254 HC_gene_4620 215 + 88717 89254 -chrX 89349 90675 LC_gene_4621 1 + 89349 90675 -chrX 90763 91922 HC_gene_4622 2002 + 90763 91922 -chrX 92091 92798 LC_gene_4623 1 + 92091 92798 -chrX 94975 96166 HC_gene_4624 275 + 94975 96166 -chrX 96662 96939 LC_gene_4625 1 + 96662 96939 -chrX 97707 99611 HC_gene_4626 39 + 97707 99611 -chrX 99650 100674 LC_gene_4627 1 + 99650 100674 -chrX 101121 101859 HC_gene_4628 5 + 101121 101859 -chrX 104956 106202 HC_gene_4629 361 + 104956 106202 -chrX 106377 106881 HC_gene_4630 680 + 106377 106881 -chrX 109822 110403 MC_gene_4631 2 + 109822 110403 -chrX 111392 112241 MC_gene_4632 1 + 111392 112241 -chrX 111579 113760 MC_gene_4633 1 + 111579 113760 -chrX 116486 117951 HC_gene_4634 36 + 116486 117951 -chrX 117869 118957 HC_gene_4635 2 + 117869 118957 -chrX 119509 122007 HC_gene_4636 5036 + 119509 122007 -chrX 122302 123431 LC_gene_4637 1 + 122302 123431 -chrX 123767 126496 HC_gene_4638 3 + 123767 126496 -chrX 126671 129123 HC_gene_4639 5 + 126671 129123 -chrX 134245 136156 MC_gene_4640 1 + 134245 136156 -chrX 136935 137094 HC_gene_4641 2 + 136935 137094 -chrX 137333 139429 HC_gene_4642 9 + 137333 139429 -chrX 140378 141619 HC_gene_4643 447 + 140378 141619 -chrX 141870 142884 MC_gene_4644 1 + 141870 142884 -chrX 143165 144922 HC_gene_4645 13 + 143165 144922 -chrX 145123 146110 HC_gene_4646 113 + 145123 146110 -chrX 146324 146902 HC_gene_4647 26 + 146324 146902 -chrX 147069 147895 HC_gene_4648 354 + 147069 147895 -chrX 150865 151678 HC_gene_4649 382 + 150865 151678 -chrX 152401 153447 MC_gene_4650 1 + 152401 153447 -chrX 155012 156489 MC_gene_4651 1 + 155012 156489 -chrX 158155 159512 HC_gene_4652 41 + 158155 159512 -chrX 160540 161703 HC_gene_4653 79 + 160540 161703 -chrX 161894 164319 HC_gene_4654 5 + 161894 164319 -chrX 172821 173543 MC_gene_4655 1 + 172821 173543 -chrX 177712 178018 MC_gene_4656 1 + 177712 178018 -chrX 177827 178162 MC_gene_4657 1 + 177827 178162 -chrX 177862 178746 MC_gene_4658 1 + 177862 178746 -chrX 178726 180182 MC_gene_4659 1 + 178726 180182 -chrX 180510 180831 HC_gene_4660 10 + 180510 180831 -chrX 181506 182117 MC_gene_4661 1 + 181506 182117 -chrX 182692 183295 MC_gene_4662 1 + 182692 183295 -chrX 184492 185550 HC_gene_4663 24 + 184492 185550 -chrX 186769 187004 MC_gene_4664 1 + 186769 187004 -chrX 186905 187097 MC_gene_4665 1 + 186905 187097 -chrX 187027 188086 MC_gene_4666 1 + 187027 188086 -chrX 189697 190373 HC_gene_4667 246 + 189697 190373 -chrX 191685 192467 HC_gene_4668 31 + 191685 192467 -chrX 192479 193653 HC_gene_4669 107 + 192479 193653 -chrX 193855 195305 HC_gene_4670 14 + 193855 195305 -chrX 195973 197230 HC_gene_4671 207 + 195973 197230 -chrX 204297 204552 MC_gene_4672 1 + 204297 204552 -chrX 204742 204910 MC_gene_4673 1 + 204742 204910 -chrX 205268 207603 HC_gene_4674 17 + 205268 207603 -chrX 207824 209738 HC_gene_4675 204 + 207824 209738 -chrX 211929 213834 LC_gene_4676 1 + 211929 213834 -chrX 217614 220182 MC_gene_4677 1 + 217614 220182 -chrX 220579 223476 HC_gene_4678 1 + 220579 223476 -chrX 224264 227159 LC_gene_4679 1 + 224264 227159 -chrX 227281 227939 HC_gene_4680 214 + 227281 227939 -chrX 228032 228803 MC_gene_4681 1 + 228032 228803 -chrX 228797 230917 LC_gene_4682 1 + 228797 230917 -chrX 231257 233875 HC_gene_4683 11 + 231257 233875 -chrX 236815 237072 HC_gene_4684 19 + 236815 237072 -chrX 237229 238437 HC_gene_4685 2 + 237229 238437 -chrX 239324 240200 HC_gene_4686 9 + 239324 240200 -chrX 240516 241871 MC_gene_4687 1 + 240516 241871 -chrX 241890 245335 HC_gene_4688 8 + 241890 245335 -chrX 245545 246301 HC_gene_4689 214 + 245545 246301 -chrX 246451 247046 HC_gene_4690 91 + 246451 247046 -chrX 247160 251768 HC_gene_4691 1 + 247160 251768 -chrX 253773 254532 LC_gene_4692 1 + 253773 254532 -chrX 257207 261046 HC_gene_4693 15 + 257207 261046 -chrX 261643 262379 MC_gene_4694 1 + 261643 262379 -chrX 268024 268393 MC_gene_4695 1 + 268024 268393 -chrX 268771 269897 HC_gene_4696 203 + 268771 269897 -chrX 272745 274793 HC_gene_4697 7 + 272745 274793 -chrX 273558 274967 HC_gene_4698 6 + 273558 274967 -chrX 278775 281033 HC_gene_4699 4 + 278775 281033 -chrX 281069 283665 HC_gene_4700 30 + 281069 283665 -chrX 289645 291147 HC_gene_4701 2 + 289645 291147 -chrX 291495 295048 HC_gene_4702 39 + 291495 295048 -chrX 295179 299171 HC_gene_4703 56 + 295179 299171 -chrX 303095 305225 HC_gene_4704 27 + 303095 305225 -chrX 305467 305859 LC_gene_4705 1 + 305467 305859 -chrX 306085 308030 HC_gene_4706 13 + 306085 308030 -chrX 310894 312146 MC_gene_4707 1 + 310894 312146 -chrX 312655 313020 MC_gene_4708 1 + 312655 313020 -chrX 316692 317182 HC_gene_4709 188 + 316692 317182 -chrX 317257 319879 HC_gene_4710 12 + 317257 319879 -chrX 319974 323183 HC_gene_4711 21 + 319974 323183 -chrX 323391 324824 HC_gene_4712 59 + 323391 324824 -chrX 324927 326282 HC_gene_4713 25 + 324927 326282 -chrX 329780 330228 HC_gene_4714 2 + 329780 330228 -chrX 333327 334167 HC_gene_4715 372 + 333327 334167 -chrX 334258 335892 HC_gene_4716 55 + 334258 335892 -chrX 335874 337231 HC_gene_4717 54 + 335874 337231 -chrX 338003 339400 HC_gene_4718 410 + 338003 339400 -chrX 341828 342348 HC_gene_4719 2 + 341828 342348 -chrX 342459 345804 HC_gene_4720 31 + 342459 345804 -chrX 345963 347419 HC_gene_4721 23 + 345963 347419 -chrX 348275 348881 LC_gene_4722 1 + 348275 348881 -chrX 349200 349857 MC_gene_4723 1 + 349200 349857 -chrX 352360 353906 HC_gene_4724 22 + 352360 353906 -chrX 354462 355182 LC_gene_4725 1 + 354462 355182 -chrX 357525 358134 HC_gene_4726 17 + 357525 358134 -chrX 358141 360066 LC_gene_4727 1 + 358141 360066 -chrX 361169 365568 HC_gene_4728 22 + 361169 365568 -chrX 365724 368474 HC_gene_4729 37 + 365724 368474 -chrX 374267 374861 LC_gene_4730 1 + 374267 374861 -chrX 375048 376303 MC_gene_4731 2 + 375048 376303 -chrX 376548 377443 MC_gene_4732 1 + 376548 377443 -chrX 377569 378291 LC_gene_4733 1 + 377569 378291 -chrX 378704 380253 HC_gene_4734 61 + 378704 380253 -chrX 380641 381272 MC_gene_4735 1 + 380641 381272 -chrX 381287 383629 HC_gene_4736 552 + 381287 383629 -chrX 383809 386233 HC_gene_4737 61 + 383809 386233 -chrX 386629 387104 LC_gene_4738 1 + 386629 387104 -chrX 387632 388388 HC_gene_4739 55 + 387632 388388 -chrX 388363 390085 LC_gene_4740 1 + 388363 390085 -chrX 392229 393758 HC_gene_4741 558 + 392229 393758 -chrX 393901 395715 HC_gene_4742 15 + 393901 395715 -chrX 398265 398939 MC_gene_4743 2 + 398265 398939 -chrX 398556 398976 MC_gene_4744 1 + 398556 398976 -chrX 402795 405525 HC_gene_4745 5 + 402795 405525 -chrX 405250 407416 HC_gene_4746 14 + 405250 407416 -chrX 407531 409284 HC_gene_4747 225 + 407531 409284 -chrX 410653 411236 MC_gene_4748 1 + 410653 411236 -chrX 413611 413864 MC_gene_4749 1 + 413611 413864 -chrX 413674 413927 MC_gene_4750 1 + 413674 413927 -chrX 414380 414962 LC_gene_4751 1 + 414380 414962 -chrX 415187 415427 HC_gene_4752 7 + 415187 415427 -chrX 416505 416917 LC_gene_4753 1 + 416505 416917 -chrX 417553 417820 LC_gene_4754 1 + 417553 417820 -chrX 421894 422522 HC_gene_4755 18 + 421894 422522 -chrX 422654 423125 MC_gene_4756 1 + 422654 423125 -chrX 429731 431416 HC_gene_4757 3 + 429731 431416 -chrX 432484 433188 HC_gene_4758 90 + 432484 433188 -chrX 434924 436148 HC_gene_4759 619 + 434924 436148 -chrX 436744 438741 HC_gene_4760 87 + 436744 438741 -chrX 438833 441342 HC_gene_4761 71 + 438833 441342 -chrX 442840 445419 HC_gene_4762 1 + 442840 445419 -chrX 445864 448314 HC_gene_4763 30 + 445864 448314 -chrX 449192 450899 HC_gene_4764 38 + 449192 450899 -chrX 450922 452022 HC_gene_4765 504 + 450922 452022 -chrX 452317 453524 HC_gene_4766 5 + 452317 453524 -chrX 456025 456258 HC_gene_4767 4 + 456025 456258 -chrX 456034 456733 HC_gene_4768 4 + 456034 456733 -chrX 456853 457791 MC_gene_4769 1 + 456853 457791 -chrX 457966 458825 HC_gene_4770 10 + 457966 458825 -chrX 459393 459947 HC_gene_4771 15 + 459393 459947 -chrX 460340 461691 HC_gene_4772 31 + 460340 461691 -chrX 461767 464417 HC_gene_4773 486 + 461767 464417 -chrX 466496 467206 MC_gene_4774 1 + 466496 467206 -chrX 467240 469038 MC_gene_4775 2 + 467240 469038 -chrX 468546 469361 MC_gene_4776 1 + 468546 469361 -chrX 469754 470249 HC_gene_4777 34 + 469754 470249 -chrX 472153 472805 MC_gene_4778 1 + 472153 472805 -chrX 475494 478373 MC_gene_4779 2 + 475494 478373 -chrX 477665 478948 MC_gene_4780 1 + 477665 478948 -chrX 481681 485602 MC_gene_4781 1 + 481681 485602 -chrX 491053 492409 HC_gene_4782 41 + 491053 492409 -chrX 496640 497196 HC_gene_4783 73 + 496640 497196 -chrX 497342 500762 HC_gene_4784 7 + 497342 500762 -chrX 503943 507348 HC_gene_4785 2 + 503943 507348 -chrX 507705 510152 HC_gene_4786 14 + 507705 510152 -chrX 513412 513902 LC_gene_4787 1 + 513412 513902 -chrX 514030 516387 HC_gene_4788 44 + 514030 516387 -chrX 516575 516921 MC_gene_4789 1 + 516575 516921 -chrX 518653 519568 HC_gene_4790 2 + 518653 519568 -chrX 522019 523943 HC_gene_4791 26 + 522019 523943 -chrX 524315 524638 LC_gene_4792 1 + 524315 524638 -chrX 524661 524887 LC_gene_4793 1 + 524661 524887 -chrX 524932 526232 LC_gene_4794 1 + 524932 526232 -chrX 526167 526841 HC_gene_4795 219 + 526167 526841 -chrX 528684 529704 HC_gene_4796 11 + 528684 529704 -chrX 529846 531714 HC_gene_4797 85 + 529846 531714 -chrX 532054 533820 HC_gene_4798 29 + 532054 533820 -chrX 533974 537719 HC_gene_4799 52 + 533974 537719 -chrX 538760 539683 HC_gene_4800 27 + 538760 539683 -chrX 539974 540575 MC_gene_4801 1 + 539974 540575 -chrX 541582 542571 LC_gene_4802 1 + 541582 542571 -chrX 544037 544784 HC_gene_4803 106 + 544037 544784 -chrX 545713 548462 MC_gene_4804 8 + 545713 548462 -chrX 548708 550427 HC_gene_4805 6 + 548708 550427 -chrX 550373 553468 HC_gene_4806 1 + 550373 553468 -chrX 555176 555689 HC_gene_4807 266 + 555176 555689 -chrX 555876 557755 HC_gene_4808 290 + 555876 557755 -chrX 559394 561658 MC_gene_4809 1 + 559394 561658 -chrX 562984 565442 MC_gene_4810 2 + 562984 565442 -chrX 565412 566944 HC_gene_4811 10 + 565412 566944 -chrX 567601 569558 HC_gene_4812 75 + 567601 569558 -chrX 571056 572321 LC_gene_4813 1 + 571056 572321 -chrX 572324 572605 LC_gene_4814 1 + 572324 572605 -chrX 573175 573886 HC_gene_4815 53 + 573175 573886 -chrX 573919 575446 HC_gene_4816 158 + 573919 575446 -chrX 576880 577088 HC_gene_4817 14 + 576880 577088 -chrX 577099 578824 MC_gene_4818 1 + 577099 578824 -chrX 579520 580440 HC_gene_4819 14 + 579520 580440 -chrX 581360 581830 MC_gene_4820 1 + 581360 581830 -chrX 582581 582960 MC_gene_4821 1 + 582581 582960 -chrX 583692 585912 HC_gene_4822 43 + 583692 585912 -chrX 586037 587435 HC_gene_4823 50 + 586037 587435 -chrX 587626 590652 HC_gene_4824 6 + 587626 590652 -chrX 594879 596172 MC_gene_4825 1 + 594879 596172 -chrX 598683 603197 HC_gene_4826 2 + 598683 603197 -chrX 604255 604525 MC_gene_4827 1 + 604255 604525 -chrX 605467 606611 MC_gene_4828 2 + 605467 606611 -chrX 606889 607169 HC_gene_4829 1 + 606889 607169 -chrX 608283 608993 HC_gene_4830 84 + 608283 608993 -chrX 610537 611143 MC_gene_4831 1 + 610537 611143 -chrX 611163 612132 HC_gene_4832 67 + 611163 612132 -chrX 612348 613120 HC_gene_4833 39 + 612348 613120 -chrX 613223 613555 MC_gene_4834 1 + 613223 613555 -chrX 615457 616357 HC_gene_4835 59 + 615457 616357 -chrX 617153 617742 MC_gene_4836 1 + 617153 617742 -chrX 617506 617843 MC_gene_4837 1 + 617506 617843 -chrX 618136 619164 HC_gene_4838 115 + 618136 619164 -chrX 619677 620266 MC_gene_4839 1 + 619677 620266 -chrX 620564 622631 HC_gene_4840 80 + 620564 622631 -chrX 623179 624648 HC_gene_4841 691 + 623179 624648 -chrX 624679 628479 HC_gene_4842 4 + 624679 628479 -chrX 628902 629795 HC_gene_4843 12 + 628902 629795 -chrX 630816 633008 LC_gene_4844 1 + 630816 633008 -chrX 633563 635849 HC_gene_4845 13 + 633563 635849 -chrX 637024 637727 HC_gene_4846 52 + 637024 637727 -chrX 637755 638278 HC_gene_4847 120 + 637755 638278 -chrX 639288 640746 HC_gene_4848 25 + 639288 640746 -chrX 640715 641825 HC_gene_4849 31 + 640715 641825 -chrX 641975 643492 HC_gene_4850 138 + 641975 643492 -chrX 644327 644564 MC_gene_4851 1 + 644327 644564 -chrX 644812 645345 MC_gene_4852 1 + 644812 645345 -chrX 647412 649514 HC_gene_4853 821 + 647412 649514 -chrX 649707 651370 HC_gene_4854 13 + 649707 651370 -chrX 651863 652778 HC_gene_4855 7487 + 651863 652778 -chrX 654392 654742 HC_gene_4856 3 + 654392 654742 -chrX 663145 663703 LC_gene_4857 1 + 663145 663703 -chrX 663748 664069 HC_gene_4858 22 + 663748 664069 -chrX 664798 666609 MC_gene_4859 1 + 664798 666609 -chrX 665245 667244 MC_gene_4860 1 + 665245 667244 -chrX 667376 673727 HC_gene_4861 136 + 667376 673727 -chrX 676949 677548 HC_gene_4862 364 + 676949 677548 -chrX 678901 680134 LC_gene_4863 1 + 678901 680134 -chrX 680071 680728 MC_gene_4864 1 + 680071 680728 -chrX 684538 689449 HC_gene_4865 7 + 684538 689449 -chrX 690892 692335 LC_gene_4866 1 + 690892 692335 -chrX 695871 697042 HC_gene_4867 23 + 695871 697042 -chrX 697118 698393 HC_gene_4868 89 + 697118 698393 -chrX 700833 701824 HC_gene_4869 149 + 700833 701824 -chrX 704163 705635 HC_gene_4870 2 + 704163 705635 -chrX 705685 707189 HC_gene_4871 298 + 705685 707189 -chrX 707208 708773 HC_gene_4872 3 + 707208 708773 -chrX 710045 711000 MC_gene_4873 1 + 710045 711000 -chrX 717048 717876 LC_gene_4874 1 + 717048 717876 -chrX 718221 718524 HC_gene_4875 1 + 718221 718524 -chrX 719427 721389 HC_gene_4876 1 + 719427 721389 -chrX 723353 723996 MC_gene_4877 1 + 723353 723996 -chrX 724385 724981 HC_gene_4878 10 + 724385 724981 -chrX 725578 728351 HC_gene_4879 2 + 725578 728351 -chrX 727028 728355 HC_gene_4880 3 + 727028 728355 -chrX 729021 729867 LC_gene_4881 1 + 729021 729867 -chrX 730480 731848 LC_gene_4882 1 + 730480 731848 -chrX 737894 742652 LC_gene_4883 1 + 737894 742652 -chrX 400 3699 LC_gene_4884 1 - 400 3699 -chrX 16667 20705 LC_gene_4885 1 - 16667 20705 -chrX 22484 23689 LC_gene_4886 1 - 22484 23689 -chrX 24217 28342 HC_gene_4887 1 - 24217 28342 -chrX 30009 30864 MC_gene_4888 1 - 30009 30864 -chrX 30226 31093 MC_gene_4889 1 - 30226 31093 -chrX 31027 33248 MC_gene_4890 1 - 31027 33248 -chrX 33544 36277 HC_gene_4891 32 - 33544 36277 -chrX 36253 37477 MC_gene_4892 1 - 36253 37477 -chrX 37475 37661 MC_gene_4893 1 - 37475 37661 -chrX 39557 41242 HC_gene_4894 50 - 39557 41242 -chrX 41197 41862 HC_gene_4895 1 - 41197 41862 -chrX 43653 44122 HC_gene_4896 1 - 43653 44122 -chrX 45264 47445 HC_gene_4897 1 - 45264 47445 -chrX 47577 49917 HC_gene_4898 2 - 47577 49917 -chrX 50025 50453 HC_gene_4899 53 - 50025 50453 -chrX 50555 53167 HC_gene_4900 5 - 50555 53167 -chrX 54198 54873 LC_gene_4901 1 - 54198 54873 -chrX 56259 58837 HC_gene_4902 187 - 56259 58837 -chrX 59629 60169 HC_gene_4903 29 - 59629 60169 -chrX 62477 63546 LC_gene_4904 1 - 62477 63546 -chrX 67714 68806 HC_gene_4905 367 - 67714 68806 -chrX 70642 72623 LC_gene_4906 1 - 70642 72623 -chrX 72548 73420 HC_gene_4907 345 - 72548 73420 -chrX 74704 75085 HC_gene_4908 204 - 74704 75085 -chrX 74709 75319 HC_gene_4909 2835 - 74709 75319 -chrX 76540 79421 HC_gene_4910 7 - 76540 79421 -chrX 81905 83040 HC_gene_4911 10 - 81905 83040 -chrX 83373 83821 HC_gene_4912 6 - 83373 83821 -chrX 87478 88596 HC_gene_4913 49 - 87478 88596 -chrX 89156 90114 HC_gene_4914 246 - 89156 90114 -chrX 91824 94698 HC_gene_4915 30 - 91824 94698 -chrX 95988 96540 HC_gene_4916 251 - 95988 96540 -chrX 96752 97900 MC_gene_4917 2 - 96752 97900 -chrX 99038 99402 MC_gene_4918 1 - 99038 99402 -chrX 99585 100927 HC_gene_4919 105 - 99585 100927 -chrX 101112 101790 MC_gene_4920 1 - 101112 101790 -chrX 102014 104522 HC_gene_4921 39 - 102014 104522 -chrX 105692 106049 MC_gene_4922 1 - 105692 106049 -chrX 106857 109853 HC_gene_4923 37 - 106857 109853 -chrX 109753 111379 HC_gene_4924 28 - 109753 111379 -chrX 111604 113414 HC_gene_4925 9 - 111604 113414 -chrX 113762 115679 HC_gene_4926 20 - 113762 115679 -chrX 115882 116472 HC_gene_4927 1 - 115882 116472 -chrX 116627 117047 HC_gene_4928 27 - 116627 117047 -chrX 117101 117682 MC_gene_4929 1 - 117101 117682 -chrX 117825 118849 HC_gene_4930 19 - 117825 118849 -chrX 118826 119141 HC_gene_4931 11 - 118826 119141 -chrX 121038 121850 LC_gene_4932 1 - 121038 121850 -chrX 122054 122991 HC_gene_4933 2545 - 122054 122991 -chrX 123686 126397 HC_gene_4934 60 - 123686 126397 -chrX 126461 129036 HC_gene_4935 19 - 126461 129036 -chrX 129123 130822 HC_gene_4936 33 - 129123 130822 -chrX 130918 134026 HC_gene_4937 39 - 130918 134026 -chrX 136298 136807 HC_gene_4938 770 - 136298 136807 -chrX 139362 140101 HC_gene_4939 11 - 139362 140101 -chrX 140220 140903 LC_gene_4940 1 - 140220 140903 -chrX 141185 142635 HC_gene_4941 5 - 141185 142635 -chrX 142821 143692 LC_gene_4942 1 - 142821 143692 -chrX 144137 144903 HC_gene_4943 27 - 144137 144903 -chrX 145899 146795 MC_gene_4944 1 - 145899 146795 -chrX 147808 150624 HC_gene_4945 34 - 147808 150624 -chrX 150873 153083 HC_gene_4946 33 - 150873 153083 -chrX 153253 154760 HC_gene_4947 1126 - 153253 154760 -chrX 154829 156146 HC_gene_4948 9 - 154829 156146 -chrX 156288 157307 HC_gene_4949 2659 - 156288 157307 -chrX 159451 159877 HC_gene_4950 214 - 159451 159877 -chrX 160510 161655 HC_gene_4951 1 - 160510 161655 -chrX 161910 162343 MC_gene_4952 1 - 161910 162343 -chrX 164140 165380 HC_gene_4953 26 - 164140 165380 -chrX 165619 172516 HC_gene_4954 120 - 165619 172516 -chrX 172670 173041 MC_gene_4955 1 - 172670 173041 -chrX 173513 177594 HC_gene_4956 19 - 173513 177594 -chrX 177786 180740 HC_gene_4957 20 - 177786 180740 -chrX 180690 181796 HC_gene_4958 145 - 180690 181796 -chrX 181798 182475 HC_gene_4959 1 - 181798 182475 -chrX 185430 186700 HC_gene_4960 86 - 185430 186700 -chrX 186895 187811 HC_gene_4961 261 - 186895 187811 -chrX 187931 189449 HC_gene_4962 299 - 187931 189449 -chrX 190301 191103 HC_gene_4963 156 - 190301 191103 -chrX 191142 192225 HC_gene_4964 5 - 191142 192225 -chrX 193493 196026 HC_gene_4965 75 - 193493 196026 -chrX 204237 204795 LC_gene_4966 1 - 204237 204795 -chrX 209724 211662 HC_gene_4967 16 - 209724 211662 -chrX 211930 217338 HC_gene_4968 24 - 211930 217338 -chrX 217529 220085 HC_gene_4969 3 - 217529 220085 -chrX 221377 222666 LC_gene_4970 1 - 221377 222666 -chrX 223343 223487 MC_gene_4971 1 - 223343 223487 -chrX 224792 227075 HC_gene_4972 10 - 224792 227075 -chrX 227956 228479 HC_gene_4973 139 - 227956 228479 -chrX 228828 231077 HC_gene_4974 3 - 228828 231077 -chrX 234108 236508 HC_gene_4975 39 - 234108 236508 -chrX 238372 239138 HC_gene_4976 2 - 238372 239138 -chrX 245213 246147 MC_gene_4977 1 - 245213 246147 -chrX 246961 249058 MC_gene_4978 2 - 246961 249058 -chrX 251678 252740 HC_gene_4979 11 - 251678 252740 -chrX 253736 254488 HC_gene_4980 2 - 253736 254488 -chrX 254583 256799 HC_gene_4981 15 - 254583 256799 -chrX 259836 262561 HC_gene_4982 26 - 259836 262561 -chrX 262687 265114 HC_gene_4983 6 - 262687 265114 -chrX 266883 268087 MC_gene_4984 1 - 266883 268087 -chrX 267269 268119 MC_gene_4985 1 - 267269 268119 -chrX 267928 268406 MC_gene_4986 1 - 267928 268406 -chrX 269784 272589 HC_gene_4987 16 - 269784 272589 -chrX 274728 280661 HC_gene_4988 9 - 274728 280661 -chrX 283639 285285 HC_gene_4989 49 - 283639 285285 -chrX 285447 289409 HC_gene_4990 174 - 285447 289409 -chrX 289697 290939 HC_gene_4991 274 - 289697 290939 -chrX 290978 294055 HC_gene_4992 104 - 290978 294055 -chrX 294093 294901 MC_gene_4993 1 - 294093 294901 -chrX 299069 302873 HC_gene_4994 10 - 299069 302873 -chrX 304629 305900 HC_gene_4995 48 - 304629 305900 -chrX 308748 310645 HC_gene_4996 1 - 308748 310645 -chrX 310829 312713 HC_gene_4997 28 - 310829 312713 -chrX 312909 313937 HC_gene_4998 102 - 312909 313937 -chrX 313916 314895 HC_gene_4999 60 - 313916 314895 -chrX 314936 316515 HC_gene_5000 139 - 314936 316515 -chrX 316945 317310 HC_gene_5001 3 - 316945 317310 -chrX 318984 319778 HC_gene_5002 5 - 318984 319778 -chrX 322095 322987 MC_gene_5003 1 - 322095 322987 -chrX 322169 323137 MC_gene_5004 1 - 322169 323137 -chrX 323215 323524 MC_gene_5005 1 - 323215 323524 -chrX 324760 325194 HC_gene_5006 1 - 324760 325194 -chrX 326177 327919 HC_gene_5007 3 - 326177 327919 -chrX 328033 330180 HC_gene_5008 14 - 328033 330180 -chrX 330256 333149 HC_gene_5009 6 - 330256 333149 -chrX 333265 334075 MC_gene_5010 1 - 333265 334075 -chrX 335319 335568 MC_gene_5011 1 - 335319 335568 -chrX 335781 336829 LC_gene_5012 1 - 335781 336829 -chrX 337095 337602 LC_gene_5013 1 - 337095 337602 -chrX 340545 342220 HC_gene_5014 3 - 340545 342220 -chrX 347113 348663 HC_gene_5015 47 - 347113 348663 -chrX 348618 348925 HC_gene_5016 15 - 348618 348925 -chrX 349235 349357 HC_gene_5017 2 - 349235 349357 -chrX 349494 352213 HC_gene_5018 2 - 349494 352213 -chrX 355936 357720 LC_gene_5019 1 - 355936 357720 -chrX 357906 359714 HC_gene_5020 78 - 357906 359714 -chrX 361065 361637 HC_gene_5021 2 - 361065 361637 -chrX 364468 365225 LC_gene_5022 1 - 364468 365225 -chrX 368373 371440 HC_gene_5023 9 - 368373 371440 -chrX 372478 373905 HC_gene_5024 1 - 372478 373905 -chrX 374095 374333 MC_gene_5025 1 - 374095 374333 -chrX 374860 375260 MC_gene_5026 1 - 374860 375260 -chrX 375865 376947 MC_gene_5027 1 - 375865 376947 -chrX 380161 381050 HC_gene_5028 25 - 380161 381050 -chrX 386112 387505 HC_gene_5029 72 - 386112 387505 -chrX 387696 388160 LC_gene_5030 1 - 387696 388160 -chrX 388283 390855 HC_gene_5031 9 - 388283 390855 -chrX 390927 391432 MC_gene_5032 1 - 390927 391432 -chrX 391779 392726 LC_gene_5033 1 - 391779 392726 -chrX 393221 393647 LC_gene_5034 1 - 393221 393647 -chrX 395542 396614 HC_gene_5035 70 - 395542 396614 -chrX 397088 398561 HC_gene_5036 21 - 397088 398561 -chrX 398779 402503 HC_gene_5037 39 - 398779 402503 -chrX 402573 403083 MC_gene_5038 1 - 402573 403083 -chrX 404290 405122 MC_gene_5039 1 - 404290 405122 -chrX 405375 406539 LC_gene_5040 1 - 405375 406539 -chrX 406942 407318 LC_gene_5041 1 - 406942 407318 -chrX 409321 411033 HC_gene_5042 21 - 409321 411033 -chrX 411153 413434 HC_gene_5043 85 - 411153 413434 -chrX 413838 414811 HC_gene_5044 85 - 413838 414811 -chrX 416677 417283 HC_gene_5045 6 - 416677 417283 -chrX 417225 419588 HC_gene_5046 46 - 417225 419588 -chrX 419753 421710 HC_gene_5047 204 - 419753 421710 -chrX 423082 424158 HC_gene_5048 38 - 423082 424158 -chrX 424515 424854 MC_gene_5049 1 - 424515 424854 -chrX 431304 432214 HC_gene_5050 134 - 431304 432214 -chrX 433108 434956 HC_gene_5051 257 - 433108 434956 -chrX 436721 438572 MC_gene_5052 1 - 436721 438572 -chrX 440641 442565 HC_gene_5053 13 - 440641 442565 -chrX 442672 443188 HC_gene_5054 277 - 442672 443188 -chrX 445330 445688 HC_gene_5055 4 - 445330 445688 -chrX 448212 448780 MC_gene_5056 1 - 448212 448780 -chrX 449044 450593 MC_gene_5057 1 - 449044 450593 -chrX 451740 452863 MC_gene_5058 1 - 451740 452863 -chrX 453542 454729 HC_gene_5059 7892 - 453542 454729 -chrX 456106 457782 LC_gene_5060 1 - 456106 457782 -chrX 457812 458392 HC_gene_5061 88 - 457812 458392 -chrX 458589 459472 HC_gene_5062 26 - 458589 459472 -chrX 459669 460214 HC_gene_5063 65 - 459669 460214 -chrX 460283 461556 MC_gene_5064 2 - 460283 461556 -chrX 461710 462636 LC_gene_5065 1 - 461710 462636 -chrX 464286 466224 HC_gene_5066 320 - 464286 466224 -chrX 466284 467054 HC_gene_5067 237 - 466284 467054 -chrX 467130 468311 HC_gene_5068 16 - 467130 468311 -chrX 468460 469606 HC_gene_5069 19 - 468460 469606 -chrX 470098 471679 HC_gene_5070 739 - 470098 471679 -chrX 472025 472527 HC_gene_5071 3 - 472025 472527 -chrX 483757 486255 MC_gene_5072 1 - 483757 486255 -chrX 485270 490889 MC_gene_5073 6 - 485270 490889 -chrX 492291 496475 HC_gene_5074 3 - 492291 496475 -chrX 497009 497236 HC_gene_5075 4 - 497009 497236 -chrX 500622 503553 MC_gene_5076 4 - 500622 503553 -chrX 507273 507528 HC_gene_5077 1 - 507273 507528 -chrX 510044 513830 HC_gene_5078 12 - 510044 513830 -chrX 516328 517670 HC_gene_5079 39 - 516328 517670 -chrX 517756 517878 MC_gene_5080 1 - 517756 517878 -chrX 518474 519268 HC_gene_5081 232 - 518474 519268 -chrX 519417 521742 HC_gene_5082 772 - 519417 521742 -chrX 523924 524509 HC_gene_5083 16 - 523924 524509 -chrX 524861 525411 HC_gene_5084 308 - 524861 525411 -chrX 526262 528495 HC_gene_5085 42 - 526262 528495 -chrX 529381 529633 MC_gene_5086 1 - 529381 529633 -chrX 533737 534756 MC_gene_5087 1 - 533737 534756 -chrX 539510 540493 HC_gene_5088 14 - 539510 540493 -chrX 540540 540923 MC_gene_5089 1 - 540540 540923 -chrX 541650 542648 HC_gene_5090 43 - 541650 542648 -chrX 543165 543469 MC_gene_5091 1 - 543165 543469 -chrX 543373 543865 MC_gene_5092 1 - 543373 543865 -chrX 544683 545433 HC_gene_5093 201 - 544683 545433 -chrX 546949 547320 MC_gene_5094 1 - 546949 547320 -chrX 547372 547892 MC_gene_5095 1 - 547372 547892 -chrX 548373 549185 MC_gene_5096 1 - 548373 549185 -chrX 551451 551676 LC_gene_5097 1 - 551451 551676 -chrX 552819 554852 HC_gene_5098 11 - 552819 554852 -chrX 557507 559179 HC_gene_5099 309 - 557507 559179 -chrX 564573 565211 MC_gene_5100 1 - 564573 565211 -chrX 566076 567467 HC_gene_5101 110 - 566076 567467 -chrX 568663 569437 HC_gene_5102 131 - 568663 569437 -chrX 569487 570641 HC_gene_5103 319 - 569487 570641 -chrX 570666 572156 HC_gene_5104 133 - 570666 572156 -chrX 572196 572966 HC_gene_5105 155 - 572196 572966 -chrX 573277 573741 LC_gene_5106 1 - 573277 573741 -chrX 574212 574843 LC_gene_5107 1 - 574212 574843 -chrX 575264 576926 HC_gene_5108 122 - 575264 576926 -chrX 577106 578238 HC_gene_5109 622 - 577106 578238 -chrX 580286 581646 HC_gene_5110 70 - 580286 581646 -chrX 581712 583561 HC_gene_5111 146 - 581712 583561 -chrX 584185 584890 MC_gene_5112 1 - 584185 584890 -chrX 585022 585477 HC_gene_5113 391 - 585022 585477 -chrX 586225 587406 HC_gene_5114 131 - 586225 587406 -chrX 587406 587598 MC_gene_5115 1 - 587406 587598 -chrX 590769 594604 HC_gene_5116 12 - 590769 594604 -chrX 594780 598363 HC_gene_5117 32 - 594780 598363 -chrX 598642 599639 LC_gene_5118 1 - 598642 599639 -chrX 602239 604262 HC_gene_5119 34 - 602239 604262 -chrX 604404 605798 HC_gene_5120 16 - 604404 605798 -chrX 605933 607211 MC_gene_5121 2 - 605933 607211 -chrX 606459 607255 MC_gene_5122 1 - 606459 607255 -chrX 607391 607737 MC_gene_5123 1 - 607391 607737 -chrX 610500 610848 MC_gene_5124 1 - 610500 610848 -chrX 610873 610986 MC_gene_5125 1 - 610873 610986 -chrX 613013 615230 HC_gene_5126 1 - 613013 615230 -chrX 616265 617638 HC_gene_5127 66 - 616265 617638 -chrX 618045 618911 LC_gene_5128 1 - 618045 618911 -chrX 619034 619876 HC_gene_5129 41 - 619034 619876 -chrX 620145 620615 HC_gene_5130 4 - 620145 620615 -chrX 622477 623314 HC_gene_5131 3223 - 622477 623314 -chrX 624583 625375 LC_gene_5132 1 - 624583 625375 -chrX 626796 628710 HC_gene_5133 97 - 626796 628710 -chrX 629486 632999 HC_gene_5134 91 - 629486 632999 -chrX 632923 633135 HC_gene_5135 1 - 632923 633135 -chrX 635751 636831 HC_gene_5136 64 - 635751 636831 -chrX 638158 639388 HC_gene_5137 103 - 638158 639388 -chrX 639822 640432 MC_gene_5138 1 - 639822 640432 -chrX 640543 641374 MC_gene_5139 1 - 640543 641374 -chrX 640653 641749 MC_gene_5140 2 - 640653 641749 -chrX 643385 644145 HC_gene_5141 143 - 643385 644145 -chrX 644262 646524 HC_gene_5142 9 - 644262 646524 -chrX 650721 650949 MC_gene_5143 1 - 650721 650949 -chrX 652697 654506 HC_gene_5144 30 - 652697 654506 -chrX 654628 656011 HC_gene_5145 79 - 654628 656011 -chrX 656163 658651 HC_gene_5146 60 - 656163 658651 -chrX 658839 662837 HC_gene_5147 10 - 658839 662837 -chrX 663664 665066 HC_gene_5148 3 - 663664 665066 -chrX 665044 667200 HC_gene_5149 53 - 665044 667200 -chrX 668501 669283 MC_gene_5150 1 - 668501 669283 -chrX 671647 672258 LC_gene_5151 1 - 671647 672258 -chrX 673656 676778 HC_gene_5152 35 - 673656 676778 -chrX 677350 678705 HC_gene_5153 14 - 677350 678705 -chrX 678814 683329 HC_gene_5154 5 - 678814 683329 -chrX 689317 690588 HC_gene_5155 477 - 689317 690588 -chrX 690533 695757 HC_gene_5156 2 - 690533 695757 -chrX 698195 700665 HC_gene_5157 91 - 698195 700665 -chrX 701936 703102 HC_gene_5158 2811 - 701936 703102 -chrX 703126 705270 HC_gene_5159 23 - 703126 705270 -chrX 708638 709736 MC_gene_5160 1 - 708638 709736 -chrX 712026 717591 HC_gene_5161 1 - 712026 717591 -chrX 718428 719203 HC_gene_5162 1 - 718428 719203 -chrX 722016 725339 HC_gene_5163 16 - 722016 725339 -chrX 728425 729219 HC_gene_5164 15 - 728425 729219 -chrX 730582 732676 LC_gene_5165 1 - 730582 732676 -chrX 737434 742369 LC_gene_5166 1 - 737434 742369 -chrX 742215 743902 HC_gene_5167 1 - 742215 743902 -chrXI 5674 6172 HC_gene_5168 4 + 5674 6172 -chrXI 6646 7650 LC_gene_5169 1 + 6646 7650 -chrXI 8196 8790 MC_gene_5170 1 + 8196 8790 -chrXI 11856 12036 MC_gene_5171 1 + 11856 12036 -chrXI 13717 14296 MC_gene_5172 1 + 13717 14296 -chrXI 14530 15789 HC_gene_5173 20 + 14530 15789 -chrXI 16217 17184 LC_gene_5174 1 + 16217 17184 -chrXI 18091 18404 MC_gene_5175 1 + 18091 18404 -chrXI 18656 19721 HC_gene_5176 5 + 18656 19721 -chrXI 19780 21221 HC_gene_5177 2 + 19780 21221 -chrXI 21224 24224 HC_gene_5178 9 + 21224 24224 -chrXI 25181 26696 HC_gene_5179 420 + 25181 26696 -chrXI 30916 31435 LC_gene_5180 1 + 30916 31435 -chrXI 31465 31928 LC_gene_5181 1 + 31465 31928 -chrXI 34416 36659 HC_gene_5182 154 + 34416 36659 -chrXI 36655 38434 LC_gene_5183 1 + 36655 38434 -chrXI 38641 42334 HC_gene_5184 289 + 38641 42334 -chrXI 46960 48038 HC_gene_5185 17 + 46960 48038 -chrXI 48161 49009 HC_gene_5186 245 + 48161 49009 -chrXI 50018 50865 HC_gene_5187 12 + 50018 50865 -chrXI 51662 52393 MC_gene_5188 1 + 51662 52393 -chrXI 52070 52474 MC_gene_5189 1 + 52070 52474 -chrXI 52659 53477 HC_gene_5190 20 + 52659 53477 -chrXI 53668 55777 HC_gene_5191 63 + 53668 55777 -chrXI 65959 66467 LC_gene_5192 1 + 65959 66467 -chrXI 66490 67766 HC_gene_5193 10 + 66490 67766 -chrXI 69797 70525 MC_gene_5194 1 + 69797 70525 -chrXI 70762 72989 MC_gene_5195 1 + 70762 72989 -chrXI 74022 74351 HC_gene_5196 3 + 74022 74351 -chrXI 74626 74857 MC_gene_5197 1 + 74626 74857 -chrXI 75785 77162 HC_gene_5198 244 + 75785 77162 -chrXI 80123 80948 MC_gene_5199 1 + 80123 80948 -chrXI 81003 82727 HC_gene_5200 66 + 81003 82727 -chrXI 82907 84027 HC_gene_5201 262 + 82907 84027 -chrXI 84603 86039 HC_gene_5202 23 + 84603 86039 -chrXI 88733 89230 HC_gene_5203 3 + 88733 89230 -chrXI 92312 93399 MC_gene_5204 1 + 92312 93399 -chrXI 94144 96379 HC_gene_5205 84 + 94144 96379 -chrXI 96603 98443 HC_gene_5206 60 + 96603 98443 -chrXI 98549 99777 HC_gene_5207 41 + 98549 99777 -chrXI 100152 100594 HC_gene_5208 11 + 100152 100594 -chrXI 101223 101765 HC_gene_5209 1 + 101223 101765 -chrXI 104910 106913 HC_gene_5210 453 + 104910 106913 -chrXI 107139 108878 HC_gene_5211 414 + 107139 108878 -chrXI 109247 110377 HC_gene_5212 3362 + 109247 110377 -chrXI 110305 111678 LC_gene_5213 1 + 110305 111678 -chrXI 113034 113399 LC_gene_5214 1 + 113034 113399 -chrXI 115104 115644 HC_gene_5215 16 + 115104 115644 -chrXI 118745 120408 HC_gene_5216 74 + 118745 120408 -chrXI 122487 125669 HC_gene_5217 8 + 122487 125669 -chrXI 125728 127156 HC_gene_5218 408 + 125728 127156 -chrXI 127390 130357 HC_gene_5219 3 + 127390 130357 -chrXI 130559 131190 HC_gene_5220 137 + 130559 131190 -chrXI 133427 133752 MC_gene_5221 1 + 133427 133752 -chrXI 133668 133952 MC_gene_5222 1 + 133668 133952 -chrXI 136334 137953 HC_gene_5223 2 + 136334 137953 -chrXI 137988 139766 MC_gene_5224 1 + 137988 139766 -chrXI 141612 142891 LC_gene_5225 1 + 141612 142891 -chrXI 143293 144436 HC_gene_5226 26 + 143293 144436 -chrXI 145745 146892 MC_gene_5227 1 + 145745 146892 -chrXI 151168 152936 HC_gene_5228 9 + 151168 152936 -chrXI 153249 154892 HC_gene_5229 162 + 153249 154892 -chrXI 154585 158469 HC_gene_5230 48 + 154585 158469 -chrXI 158593 159444 HC_gene_5231 2315 + 158593 159444 -chrXI 161519 162410 HC_gene_5232 115 + 161519 162410 -chrXI 162730 163134 MC_gene_5233 1 + 162730 163134 -chrXI 164165 164910 MC_gene_5234 1 + 164165 164910 -chrXI 164930 166047 HC_gene_5235 3 + 164930 166047 -chrXI 166312 167574 HC_gene_5236 360 + 166312 167574 -chrXI 169058 169728 LC_gene_5237 1 + 169058 169728 -chrXI 171626 173948 HC_gene_5238 49 + 171626 173948 -chrXI 174188 176539 HC_gene_5239 302 + 174188 176539 -chrXI 176725 179317 HC_gene_5240 281 + 176725 179317 -chrXI 179638 180367 HC_gene_5241 226 + 179638 180367 -chrXI 180527 182572 HC_gene_5242 47 + 180527 182572 -chrXI 182779 184600 HC_gene_5243 29 + 182779 184600 -chrXI 184804 185311 MC_gene_5244 1 + 184804 185311 -chrXI 185895 186491 HC_gene_5245 148 + 185895 186491 -chrXI 188980 190669 MC_gene_5246 1 + 188980 190669 -chrXI 191695 192652 LC_gene_5247 1 + 191695 192652 -chrXI 192908 193178 MC_gene_5248 1 + 192908 193178 -chrXI 195208 196367 HC_gene_5249 15 + 195208 196367 -chrXI 196379 197650 LC_gene_5250 1 + 196379 197650 -chrXI 200441 200718 HC_gene_5251 6 + 200441 200718 -chrXI 202045 202924 MC_gene_5252 2 + 202045 202924 -chrXI 202916 203083 MC_gene_5253 1 + 202916 203083 -chrXI 203499 205397 HC_gene_5254 121 + 203499 205397 -chrXI 205497 207823 HC_gene_5255 60 + 205497 207823 -chrXI 208162 208983 HC_gene_5256 41 + 208162 208983 -chrXI 209315 210304 HC_gene_5257 8 + 209315 210304 -chrXI 210467 212512 HC_gene_5258 18 + 210467 212512 -chrXI 212656 213700 LC_gene_5259 1 + 212656 213700 -chrXI 213925 216821 HC_gene_5260 3 + 213925 216821 -chrXI 217265 218449 HC_gene_5261 99 + 217265 218449 -chrXI 219418 219828 MC_gene_5262 1 + 219418 219828 -chrXI 220269 221197 HC_gene_5263 855 + 220269 221197 -chrXI 223620 224694 LC_gene_5264 1 + 223620 224694 -chrXI 225023 225878 LC_gene_5265 1 + 225023 225878 -chrXI 226501 228907 HC_gene_5266 17 + 226501 228907 -chrXI 229464 229721 LC_gene_5267 1 + 229464 229721 -chrXI 230278 230713 HC_gene_5268 9 + 230278 230713 -chrXI 231317 231866 HC_gene_5269 6 + 231317 231866 -chrXI 231886 234256 HC_gene_5270 120 + 231886 234256 -chrXI 234404 235859 HC_gene_5271 17 + 234404 235859 -chrXI 236180 237132 MC_gene_5272 1 + 236180 237132 -chrXI 237434 239013 HC_gene_5273 32 + 237434 239013 -chrXI 240441 241286 MC_gene_5274 1 + 240441 241286 -chrXI 242822 243100 MC_gene_5275 1 + 242822 243100 -chrXI 244584 244959 LC_gene_5276 1 + 244584 244959 -chrXI 245765 246028 MC_gene_5277 1 + 245765 246028 -chrXI 246171 247815 HC_gene_5278 2 + 246171 247815 -chrXI 248657 248884 HC_gene_5279 1 + 248657 248884 -chrXI 250826 253526 HC_gene_5280 32 + 250826 253526 -chrXI 255701 256086 LC_gene_5281 1 + 255701 256086 -chrXI 256742 257929 HC_gene_5282 31 + 256742 257929 -chrXI 259203 259703 HC_gene_5283 14984 + 259203 259703 -chrXI 261088 261959 HC_gene_5284 252 + 261088 261959 -chrXI 262093 264383 HC_gene_5285 203 + 262093 264383 -chrXI 264726 265962 HC_gene_5286 1 + 264726 265962 -chrXI 269673 269936 MC_gene_5287 1 + 269673 269936 -chrXI 269987 270921 LC_gene_5288 1 + 269987 270921 -chrXI 270980 271741 MC_gene_5289 1 + 270980 271741 -chrXI 271852 273390 HC_gene_5290 18 + 271852 273390 -chrXI 273363 277169 HC_gene_5291 92 + 273363 277169 -chrXI 278261 278757 MC_gene_5292 2 + 278261 278757 -chrXI 278766 281021 HC_gene_5293 388 + 278766 281021 -chrXI 282864 284675 HC_gene_5294 2478 + 282864 284675 -chrXI 284923 286261 HC_gene_5295 449 + 284923 286261 -chrXI 286508 288651 HC_gene_5296 31 + 286508 288651 -chrXI 288821 291143 HC_gene_5297 8 + 288821 291143 -chrXI 291387 292948 HC_gene_5298 140 + 291387 292948 -chrXI 294772 295678 LC_gene_5299 1 + 294772 295678 -chrXI 296394 297506 HC_gene_5300 1 + 296394 297506 -chrXI 298406 302460 HC_gene_5301 58 + 298406 302460 -chrXI 304896 306980 HC_gene_5302 11 + 304896 306980 -chrXI 307275 307892 HC_gene_5303 48 + 307275 307892 -chrXI 309160 309777 HC_gene_5304 319 + 309160 309777 -chrXI 310077 313243 HC_gene_5305 22 + 310077 313243 -chrXI 314757 315475 HC_gene_5306 701 + 314757 315475 -chrXI 315614 316244 HC_gene_5307 1 + 315614 316244 -chrXI 315909 316346 HC_gene_5308 8 + 315909 316346 -chrXI 316401 316957 MC_gene_5309 1 + 316401 316957 -chrXI 317595 318136 HC_gene_5310 3 + 317595 318136 -chrXI 319011 321453 HC_gene_5311 31 + 319011 321453 -chrXI 321833 323049 MC_gene_5312 2 + 321833 323049 -chrXI 323121 325545 HC_gene_5313 67 + 323121 325545 -chrXI 325752 326360 HC_gene_5314 133 + 325752 326360 -chrXI 327664 328114 LC_gene_5315 1 + 327664 328114 -chrXI 328145 328583 HC_gene_5316 2 + 328145 328583 -chrXI 328904 329160 LC_gene_5317 1 + 328904 329160 -chrXI 330134 330794 HC_gene_5318 298 + 330134 330794 -chrXI 335565 336407 LC_gene_5319 1 + 335565 336407 -chrXI 339163 339711 HC_gene_5320 10 + 339163 339711 -chrXI 340868 341325 HC_gene_5321 14 + 340868 341325 -chrXI 341289 342796 HC_gene_5322 141 + 341289 342796 -chrXI 347028 347275 MC_gene_5323 1 + 347028 347275 -chrXI 349433 351121 HC_gene_5324 30 + 349433 351121 -chrXI 353424 355220 HC_gene_5325 45 + 353424 355220 -chrXI 356285 358040 HC_gene_5326 83 + 356285 358040 -chrXI 358335 359763 HC_gene_5327 36 + 358335 359763 -chrXI 360047 361104 HC_gene_5328 103 + 360047 361104 -chrXI 362133 364386 HC_gene_5329 116 + 362133 364386 -chrXI 364658 365349 MC_gene_5330 1 + 364658 365349 -chrXI 365368 369309 HC_gene_5331 3 + 365368 369309 -chrXI 369818 371560 HC_gene_5332 341 + 369818 371560 -chrXI 371726 374177 HC_gene_5333 19 + 371726 374177 -chrXI 374427 375359 HC_gene_5334 357 + 374427 375359 -chrXI 375448 379187 HC_gene_5335 5 + 375448 379187 -chrXI 379899 380019 MC_gene_5336 1 + 379899 380019 -chrXI 381553 382649 MC_gene_5337 1 + 381553 382649 -chrXI 383660 383966 LC_gene_5338 1 + 383660 383966 -chrXI 385712 387515 HC_gene_5339 33 + 385712 387515 -chrXI 386446 387517 HC_gene_5340 27 + 386446 387517 -chrXI 387503 389138 HC_gene_5341 53 + 387503 389138 -chrXI 389251 389902 MC_gene_5342 1 + 389251 389902 -chrXI 389948 390332 HC_gene_5343 4 + 389948 390332 -chrXI 393687 395912 HC_gene_5344 65 + 393687 395912 -chrXI 402355 403601 HC_gene_5345 80 + 402355 403601 -chrXI 404075 405243 HC_gene_5346 53 + 404075 405243 -chrXI 408444 411588 HC_gene_5347 6 + 408444 411588 -chrXI 417176 417452 MC_gene_5348 1 + 417176 417452 -chrXI 418248 420157 HC_gene_5349 44 + 418248 420157 -chrXI 426205 427047 HC_gene_5350 332 + 426205 427047 -chrXI 429271 430249 HC_gene_5351 250 + 429271 430249 -chrXI 430824 431372 MC_gene_5352 1 + 430824 431372 -chrXI 430891 431492 MC_gene_5353 1 + 430891 431492 -chrXI 431885 432812 HC_gene_5354 4872 + 431885 432812 -chrXI 433196 433616 MC_gene_5355 1 + 433196 433616 -chrXI 435227 436890 HC_gene_5356 114 + 435227 436890 -chrXI 437699 438776 HC_gene_5357 175 + 437699 438776 -chrXI 439781 440209 MC_gene_5358 1 + 439781 440209 -chrXI 443041 444996 HC_gene_5359 37 + 443041 444996 -chrXI 445326 446920 HC_gene_5360 64 + 445326 446920 -chrXI 447346 447700 HC_gene_5361 1 + 447346 447700 -chrXI 448216 448428 MC_gene_5362 1 + 448216 448428 -chrXI 451415 452081 HC_gene_5363 92 + 451415 452081 -chrXI 452172 454171 HC_gene_5364 43 + 452172 454171 -chrXI 455709 457189 HC_gene_5365 1 + 455709 457189 -chrXI 458006 458306 LC_gene_5366 1 + 458006 458306 -chrXI 458582 458806 MC_gene_5367 1 + 458582 458806 -chrXI 461598 462791 HC_gene_5368 7 + 461598 462791 -chrXI 463732 465260 HC_gene_5369 248 + 463732 465260 -chrXI 465822 466179 LC_gene_5370 1 + 465822 466179 -chrXI 466419 468761 HC_gene_5371 7 + 466419 468761 -chrXI 469684 471569 HC_gene_5372 58 + 469684 471569 -chrXI 472401 474146 LC_gene_5373 1 + 472401 474146 -chrXI 475669 476241 MC_gene_5374 1 + 475669 476241 -chrXI 478319 482109 HC_gene_5375 67 + 478319 482109 -chrXI 483369 485142 HC_gene_5376 22 + 483369 485142 -chrXI 487737 488721 HC_gene_5377 144 + 487737 488721 -chrXI 489884 490388 MC_gene_5378 2 + 489884 490388 -chrXI 490990 491127 MC_gene_5379 1 + 490990 491127 -chrXI 491284 494213 HC_gene_5380 4 + 491284 494213 -chrXI 493880 497486 HC_gene_5381 58 + 493880 497486 -chrXI 500058 501215 HC_gene_5382 99 + 500058 501215 -chrXI 507166 507757 LC_gene_5383 1 + 507166 507757 -chrXI 507920 508727 HC_gene_5384 155 + 507920 508727 -chrXI 510964 512026 MC_gene_5385 1 + 510964 512026 -chrXI 514783 516942 HC_gene_5386 12 + 514783 516942 -chrXI 517252 517751 LC_gene_5387 1 + 517252 517751 -chrXI 518177 520858 HC_gene_5388 3781 + 518177 520858 -chrXI 521944 523416 HC_gene_5389 22 + 521944 523416 -chrXI 524152 525375 HC_gene_5390 70 + 524152 525375 -chrXI 526864 530531 HC_gene_5391 6 + 526864 530531 -chrXI 530827 532346 HC_gene_5392 30 + 530827 532346 -chrXI 533577 535536 HC_gene_5393 44 + 533577 535536 -chrXI 548172 549397 HC_gene_5394 20 + 548172 549397 -chrXI 549540 551450 HC_gene_5395 19 + 549540 551450 -chrXI 551610 552443 HC_gene_5396 968 + 551610 552443 -chrXI 552710 554733 HC_gene_5397 14 + 552710 554733 -chrXI 554957 556460 HC_gene_5398 728 + 554957 556460 -chrXI 556485 559037 HC_gene_5399 35 + 556485 559037 -chrXI 557575 559141 HC_gene_5400 55 + 557575 559141 -chrXI 559600 562423 HC_gene_5401 61 + 559600 562423 -chrXI 562512 565270 HC_gene_5402 11 + 562512 565270 -chrXI 567829 570331 HC_gene_5403 13 + 567829 570331 -chrXI 570391 570867 HC_gene_5404 8 + 570391 570867 -chrXI 571457 573443 HC_gene_5405 15 + 571457 573443 -chrXI 573568 574757 HC_gene_5406 78 + 573568 574757 -chrXI 576270 576489 HC_gene_5407 3 + 576270 576489 -chrXI 578473 578901 MC_gene_5408 1 + 578473 578901 -chrXI 578999 579186 MC_gene_5409 1 + 578999 579186 -chrXI 579215 579803 HC_gene_5410 283 + 579215 579803 -chrXI 580404 580833 HC_gene_5411 10 + 580404 580833 -chrXI 581594 582099 HC_gene_5412 1 + 581594 582099 -chrXI 581986 583450 HC_gene_5413 14 + 581986 583450 -chrXI 583626 584820 HC_gene_5414 50 + 583626 584820 -chrXI 584941 586757 HC_gene_5415 8 + 584941 586757 -chrXI 590330 591508 HC_gene_5416 245 + 590330 591508 -chrXI 592775 596345 HC_gene_5417 22 + 592775 596345 -chrXI 596628 596989 HC_gene_5418 2 + 596628 596989 -chrXI 599831 601543 HC_gene_5419 3 + 599831 601543 -chrXI 601925 603585 HC_gene_5420 11 + 601925 603585 -chrXI 604191 604445 MC_gene_5421 1 + 604191 604445 -chrXI 606207 607304 MC_gene_5422 1 + 606207 607304 -chrXI 608791 611264 HC_gene_5423 17 + 608791 611264 -chrXI 611321 612530 HC_gene_5424 93 + 611321 612530 -chrXI 614643 615569 MC_gene_5425 1 + 614643 615569 -chrXI 615634 617730 HC_gene_5426 44 + 615634 617730 -chrXI 618882 619532 MC_gene_5427 1 + 618882 619532 -chrXI 619647 621370 HC_gene_5428 2 + 619647 621370 -chrXI 621873 625622 HC_gene_5429 144 + 621873 625622 -chrXI 625852 626329 HC_gene_5430 133 + 625852 626329 -chrXI 626549 630487 HC_gene_5431 10 + 626549 630487 -chrXI 630793 631104 MC_gene_5432 1 + 630793 631104 -chrXI 631174 633034 MC_gene_5433 1 + 631174 633034 -chrXI 635566 638400 MC_gene_5434 1 + 635566 638400 -chrXI 640520 642738 HC_gene_5435 10 + 640520 642738 -chrXI 642952 650006 HC_gene_5436 1 + 642952 650006 -chrXI 650497 658074 HC_gene_5437 12 + 650497 658074 -chrXI 658553 660585 LC_gene_5438 1 + 658553 660585 -chrXI 660781 661405 MC_gene_5439 1 + 660781 661405 -chrXI 662649 665274 MC_gene_5440 2 + 662649 665274 -chrXI 3263 5738 HC_gene_5441 4 - 3263 5738 -chrXI 6004 7813 MC_gene_5442 1 - 6004 7813 -chrXI 8766 11237 HC_gene_5443 1 - 8766 11237 -chrXI 11249 11527 HC_gene_5444 1 - 11249 11527 -chrXI 13378 14400 HC_gene_5445 1 - 13378 14400 -chrXI 17054 18790 HC_gene_5446 95 - 17054 18790 -chrXI 21125 24138 HC_gene_5447 1 - 21125 24138 -chrXI 26554 30737 HC_gene_5448 14 - 26554 30737 -chrXI 31012 31762 HC_gene_5449 88 - 31012 31762 -chrXI 31880 34129 HC_gene_5450 42 - 31880 34129 -chrXI 36515 38174 HC_gene_5451 68 - 36515 38174 -chrXI 38369 38900 LC_gene_5452 1 - 38369 38900 -chrXI 42245 45440 HC_gene_5453 10 - 42245 45440 -chrXI 46876 47216 LC_gene_5454 1 - 46876 47216 -chrXI 48935 49844 HC_gene_5455 108 - 48935 49844 -chrXI 53391 53703 MC_gene_5456 1 - 53391 53703 -chrXI 55831 56532 HC_gene_5457 8 - 55831 56532 -chrXI 61454 63525 MC_gene_5458 1 - 61454 63525 -chrXI 63710 67512 HC_gene_5459 49 - 63710 67512 -chrXI 68092 70395 HC_gene_5460 3 - 68092 70395 -chrXI 70256 70519 HC_gene_5461 2 - 70256 70519 -chrXI 70429 73884 HC_gene_5462 4 - 70429 73884 -chrXI 74782 75582 HC_gene_5463 379 - 74782 75582 -chrXI 77039 78665 HC_gene_5464 15 - 77039 78665 -chrXI 78754 79914 HC_gene_5465 35 - 78754 79914 -chrXI 80020 80576 HC_gene_5466 612 - 80020 80576 -chrXI 85939 88998 HC_gene_5467 6 - 85939 88998 -chrXI 89118 91140 MC_gene_5468 2 - 89118 91140 -chrXI 91464 93650 HC_gene_5469 159 - 91464 93650 -chrXI 94030 94408 HC_gene_5470 2 - 94030 94408 -chrXI 95540 96325 MC_gene_5471 1 - 95540 96325 -chrXI 98353 99201 MC_gene_5472 1 - 98353 99201 -chrXI 98445 99662 MC_gene_5473 2 - 98445 99662 -chrXI 100458 100972 LC_gene_5474 1 - 100458 100972 -chrXI 106813 107659 LC_gene_5475 1 - 106813 107659 -chrXI 110155 112508 HC_gene_5476 71 - 110155 112508 -chrXI 112942 114207 HC_gene_5477 35 - 112942 114207 -chrXI 115406 118522 HC_gene_5478 26 - 115406 118522 -chrXI 120288 122300 HC_gene_5479 30 - 120288 122300 -chrXI 127817 130312 HC_gene_5480 1 - 127817 130312 -chrXI 131101 133473 HC_gene_5481 9 - 131101 133473 -chrXI 133559 134391 HC_gene_5482 101 - 133559 134391 -chrXI 134287 135860 HC_gene_5483 46 - 134287 135860 -chrXI 136033 137096 HC_gene_5484 4 - 136033 137096 -chrXI 137236 137625 HC_gene_5485 10 - 137236 137625 -chrXI 137751 140731 HC_gene_5486 14 - 137751 140731 -chrXI 140824 141089 MC_gene_5487 1 - 140824 141089 -chrXI 141193 141490 MC_gene_5488 1 - 141193 141490 -chrXI 141531 143108 HC_gene_5489 746 - 141531 143108 -chrXI 143589 143954 HC_gene_5490 1 - 143589 143954 -chrXI 144099 144914 LC_gene_5491 1 - 144099 144914 -chrXI 145571 146131 MC_gene_5492 1 - 145571 146131 -chrXI 147485 148872 HC_gene_5493 7 - 147485 148872 -chrXI 149030 152552 HC_gene_5494 11 - 149030 152552 -chrXI 152802 153008 HC_gene_5495 2 - 152802 153008 -chrXI 153600 154790 HC_gene_5496 48 - 153600 154790 -chrXI 155245 155492 MC_gene_5497 1 - 155245 155492 -chrXI 157196 158311 MC_gene_5498 2 - 157196 158311 -chrXI 159391 161341 HC_gene_5499 24 - 159391 161341 -chrXI 162305 162549 MC_gene_5500 1 - 162305 162549 -chrXI 163009 163386 HC_gene_5501 3 - 163009 163386 -chrXI 163508 164409 HC_gene_5502 10743 - 163508 164409 -chrXI 164810 165943 HC_gene_5503 67 - 164810 165943 -chrXI 165918 166250 HC_gene_5504 14 - 165918 166250 -chrXI 167484 168854 HC_gene_5505 17 - 167484 168854 -chrXI 168972 171531 HC_gene_5506 54 - 168972 171531 -chrXI 171732 173251 LC_gene_5507 1 - 171732 173251 -chrXI 175609 176494 HC_gene_5508 60 - 175609 176494 -chrXI 179192 179446 HC_gene_5509 12 - 179192 179446 -chrXI 184564 185034 HC_gene_5510 125 - 184564 185034 -chrXI 185210 185936 HC_gene_5511 193 - 185210 185936 -chrXI 186323 188771 HC_gene_5512 26 - 186323 188771 -chrXI 188861 191495 HC_gene_5513 3 - 188861 191495 -chrXI 191605 193084 HC_gene_5514 6 - 191605 193084 -chrXI 193307 194940 HC_gene_5515 8 - 193307 194940 -chrXI 195159 196079 HC_gene_5516 88 - 195159 196079 -chrXI 196287 198151 HC_gene_5517 24 - 196287 198151 -chrXI 198860 200216 LC_gene_5518 1 - 198860 200216 -chrXI 200720 201931 HC_gene_5519 92 - 200720 201931 -chrXI 202341 202747 MC_gene_5520 1 - 202341 202747 -chrXI 203976 204981 HC_gene_5521 1 - 203976 204981 -chrXI 207192 207815 LC_gene_5522 1 - 207192 207815 -chrXI 210229 211515 LC_gene_5523 1 - 210229 211515 -chrXI 212322 213033 HC_gene_5524 403 - 212322 213033 -chrXI 217125 217667 LC_gene_5525 1 - 217125 217667 -chrXI 218420 219272 HC_gene_5526 96 - 218420 219272 -chrXI 219401 219650 LC_gene_5527 1 - 219401 219650 -chrXI 221040 223092 HC_gene_5528 36 - 221040 223092 -chrXI 223174 224484 HC_gene_5529 117 - 223174 224484 -chrXI 224617 225925 HC_gene_5530 57 - 224617 225925 -chrXI 228773 230314 HC_gene_5531 53 - 228773 230314 -chrXI 230885 231751 LC_gene_5532 1 - 230885 231751 -chrXI 233211 233578 MC_gene_5533 1 - 233211 233578 -chrXI 233641 234067 MC_gene_5534 1 - 233641 234067 -chrXI 233928 234197 MC_gene_5535 1 - 233928 234197 -chrXI 235798 237042 MC_gene_5536 1 - 235798 237042 -chrXI 238542 242782 MC_gene_5537 4 - 238542 242782 -chrXI 242987 245576 HC_gene_5538 169 - 242987 245576 -chrXI 245950 247876 HC_gene_5539 78 - 245950 247876 -chrXI 253453 255484 HC_gene_5540 64 - 253453 255484 -chrXI 255667 256516 HC_gene_5541 119 - 255667 256516 -chrXI 257870 258349 MC_gene_5542 1 - 257870 258349 -chrXI 259582 260309 HC_gene_5543 7 - 259582 260309 -chrXI 260640 261058 MC_gene_5544 1 - 260640 261058 -chrXI 264280 265975 HC_gene_5545 14 - 264280 265975 -chrXI 265925 269535 HC_gene_5546 12 - 265925 269535 -chrXI 269613 270678 HC_gene_5547 46 - 269613 270678 -chrXI 270756 271659 HC_gene_5548 13 - 270756 271659 -chrXI 271582 273154 HC_gene_5549 3 - 271582 273154 -chrXI 274487 275021 LC_gene_5550 1 - 274487 275021 -chrXI 276974 277952 HC_gene_5551 107 - 276974 277952 -chrXI 278650 278882 LC_gene_5552 1 - 278650 278882 -chrXI 280434 282395 HC_gene_5553 307 - 280434 282395 -chrXI 286158 286381 HC_gene_5554 4 - 286158 286381 -chrXI 291042 291210 MC_gene_5555 1 - 291042 291210 -chrXI 291289 291816 MC_gene_5556 1 - 291289 291816 -chrXI 292579 294401 HC_gene_5557 36 - 292579 294401 -chrXI 294512 296218 HC_gene_5558 32 - 294512 296218 -chrXI 298784 299140 LC_gene_5559 1 - 298784 299140 -chrXI 302341 302775 MC_gene_5560 1 - 302341 302775 -chrXI 303554 307031 HC_gene_5561 51 - 303554 307031 -chrXI 308285 308662 MC_gene_5562 1 - 308285 308662 -chrXI 308944 309925 HC_gene_5563 10 - 308944 309925 -chrXI 313595 314464 MC_gene_5564 1 - 313595 314464 -chrXI 314334 314683 MC_gene_5565 1 - 314334 314683 -chrXI 315388 316094 HC_gene_5566 12 - 315388 316094 -chrXI 316123 317356 HC_gene_5567 398 - 316123 317356 -chrXI 319307 321515 HC_gene_5568 186 - 319307 321515 -chrXI 321570 322157 MC_gene_5569 1 - 321570 322157 -chrXI 325961 327510 HC_gene_5570 14773 - 325961 327510 -chrXI 328017 329514 HC_gene_5571 30 - 328017 329514 -chrXI 330796 334000 HC_gene_5572 11 - 330796 334000 -chrXI 334309 334955 HC_gene_5573 4673 - 334309 334955 -chrXI 336320 338851 HC_gene_5574 561 - 336320 338851 -chrXI 339065 339516 HC_gene_5575 301 - 339065 339516 -chrXI 339593 341067 HC_gene_5576 108 - 339593 341067 -chrXI 341159 342102 HC_gene_5577 1 - 341159 342102 -chrXI 342651 346809 HC_gene_5578 33 - 342651 346809 -chrXI 346994 349222 HC_gene_5579 4 - 346994 349222 -chrXI 349245 350083 LC_gene_5580 1 - 349245 350083 -chrXI 350975 353179 HC_gene_5581 116 - 350975 353179 -chrXI 353003 355315 LC_gene_5582 1 - 353003 355315 -chrXI 357929 358134 MC_gene_5583 1 - 357929 358134 -chrXI 360012 362366 HC_gene_5584 139 - 360012 362366 -chrXI 364281 365248 HC_gene_5585 10 - 364281 365248 -chrXI 368285 369171 LC_gene_5586 1 - 368285 369171 -chrXI 369196 369676 HC_gene_5587 32 - 369196 369676 -chrXI 370826 371511 MC_gene_5588 1 - 370826 371511 -chrXI 371549 373093 LC_gene_5589 1 - 371549 373093 -chrXI 373543 374164 LC_gene_5590 1 - 373543 374164 -chrXI 374774 375237 HC_gene_5591 2 - 374774 375237 -chrXI 378913 379507 LC_gene_5592 1 - 378913 379507 -chrXI 379905 382040 HC_gene_5593 102 - 379905 382040 -chrXI 382586 384763 HC_gene_5594 101 - 382586 384763 -chrXI 384715 385047 HC_gene_5595 2 - 384715 385047 -chrXI 386662 387215 MC_gene_5596 1 - 386662 387215 -chrXI 387434 388203 MC_gene_5597 1 - 387434 388203 -chrXI 389120 389995 HC_gene_5598 39 - 389120 389995 -chrXI 390178 392314 HC_gene_5599 14 - 390178 392314 -chrXI 392421 393366 HC_gene_5600 237 - 392421 393366 -chrXI 394532 397148 HC_gene_5601 11 - 394532 397148 -chrXI 397216 398619 HC_gene_5602 151 - 397216 398619 -chrXI 398763 402157 HC_gene_5603 24 - 398763 402157 -chrXI 403485 404319 HC_gene_5604 221 - 403485 404319 -chrXI 405079 407250 HC_gene_5605 5 - 405079 407250 -chrXI 407366 408061 HC_gene_5606 477 - 407366 408061 -chrXI 411419 411897 HC_gene_5607 8 - 411419 411897 -chrXI 411495 416931 HC_gene_5608 22 - 411495 416931 -chrXI 417320 418069 HC_gene_5609 403 - 417320 418069 -chrXI 420061 421220 HC_gene_5610 30 - 420061 421220 -chrXI 421339 425991 HC_gene_5611 33 - 421339 425991 -chrXI 426982 428593 HC_gene_5612 236 - 426982 428593 -chrXI 430071 431304 HC_gene_5613 114 - 430071 431304 -chrXI 432917 434994 HC_gene_5614 43 - 432917 434994 -chrXI 436864 437475 HC_gene_5615 144 - 436864 437475 -chrXI 438540 439429 HC_gene_5616 98 - 438540 439429 -chrXI 440375 442790 HC_gene_5617 223 - 440375 442790 -chrXI 446195 446488 HC_gene_5618 2 - 446195 446488 -chrXI 446692 448045 HC_gene_5619 18 - 446692 448045 -chrXI 448290 451973 HC_gene_5620 108 - 448290 451973 -chrXI 454199 455547 HC_gene_5621 42 - 454199 455547 -chrXI 458740 461354 HC_gene_5622 5 - 458740 461354 -chrXI 461397 462805 HC_gene_5623 52 - 461397 462805 -chrXI 462986 463503 HC_gene_5624 7 - 462986 463503 -chrXI 463660 464681 MC_gene_5625 1 - 463660 464681 -chrXI 463811 464802 MC_gene_5626 1 - 463811 464802 -chrXI 465134 466215 HC_gene_5627 283 - 465134 466215 -chrXI 466780 468199 LC_gene_5628 1 - 466780 468199 -chrXI 468361 469326 LC_gene_5629 1 - 468361 469326 -chrXI 471540 473429 HC_gene_5630 14 - 471540 473429 -chrXI 473451 475929 HC_gene_5631 72 - 473451 475929 -chrXI 476048 478146 HC_gene_5632 6 - 476048 478146 -chrXI 482047 483188 HC_gene_5633 56 - 482047 483188 -chrXI 485049 487400 HC_gene_5634 33 - 485049 487400 -chrXI 488563 489762 HC_gene_5635 136 - 488563 489762 -chrXI 490546 490965 MC_gene_5636 1 - 490546 490965 -chrXI 493087 493652 MC_gene_5637 1 - 493087 493652 -chrXI 496199 497506 LC_gene_5638 1 - 496199 497506 -chrXI 497481 499846 HC_gene_5639 15 - 497481 499846 -chrXI 501107 502913 HC_gene_5640 20 - 501107 502913 -chrXI 504151 506490 MC_gene_5641 1 - 504151 506490 -chrXI 508476 510658 HC_gene_5642 22 - 508476 510658 -chrXI 510787 511807 HC_gene_5643 22 - 510787 511807 -chrXI 511917 513169 HC_gene_5644 80 - 511917 513169 -chrXI 513554 514428 HC_gene_5645 54 - 513554 514428 -chrXI 514534 516013 LC_gene_5646 1 - 514534 516013 -chrXI 516405 517001 MC_gene_5647 1 - 516405 517001 -chrXI 516877 517296 MC_gene_5648 1 - 516877 517296 -chrXI 517492 518413 MC_gene_5649 1 - 517492 518413 -chrXI 520740 521745 HC_gene_5650 417 - 520740 521745 -chrXI 521869 524002 HC_gene_5651 23 - 521869 524002 -chrXI 524125 525084 HC_gene_5652 30 - 524125 525084 -chrXI 525216 526660 HC_gene_5653 122 - 525216 526660 -chrXI 526766 527259 HC_gene_5654 47 - 526766 527259 -chrXI 532090 533544 HC_gene_5655 47 - 532090 533544 -chrXI 533545 533881 MC_gene_5656 1 - 533545 533881 -chrXI 533996 535356 HC_gene_5657 13 - 533996 535356 -chrXI 535418 538850 HC_gene_5658 1 - 535418 538850 -chrXI 540884 543996 MC_gene_5659 1 - 540884 543996 -chrXI 547088 547980 MC_gene_5660 1 - 547088 547980 -chrXI 551733 552368 LC_gene_5661 1 - 551733 552368 -chrXI 554278 554628 HC_gene_5662 3 - 554278 554628 -chrXI 556203 556352 MC_gene_5663 1 - 556203 556352 -chrXI 556382 557279 MC_gene_5664 2 - 556382 557279 -chrXI 558951 559366 HC_gene_5665 36 - 558951 559366 -chrXI 560685 562318 HC_gene_5666 29 - 560685 562318 -chrXI 563993 564988 LC_gene_5667 1 - 563993 564988 -chrXI 565147 565908 HC_gene_5668 232 - 565147 565908 -chrXI 566018 567229 HC_gene_5669 208 - 566018 567229 -chrXI 570213 570958 HC_gene_5670 181 - 570213 570958 -chrXI 573344 573737 MC_gene_5671 1 - 573344 573737 -chrXI 574661 576039 HC_gene_5672 117 - 574661 576039 -chrXI 576209 578262 HC_gene_5673 102 - 576209 578262 -chrXI 579283 579528 LC_gene_5674 1 - 579283 579528 -chrXI 579664 580794 HC_gene_5675 239 - 579664 580794 -chrXI 580856 581732 MC_gene_5676 1 - 580856 581732 -chrXI 583902 584284 LC_gene_5677 1 - 583902 584284 -chrXI 585834 586620 MC_gene_5678 1 - 585834 586620 -chrXI 586626 589551 HC_gene_5679 5 - 586626 589551 -chrXI 591412 592562 HC_gene_5680 313 - 591412 592562 -chrXI 596271 596863 HC_gene_5681 99 - 596271 596863 -chrXI 596968 598926 HC_gene_5682 31 - 596968 598926 -chrXI 599000 599691 HC_gene_5683 119 - 599000 599691 -chrXI 603093 604255 HC_gene_5684 52 - 603093 604255 -chrXI 604335 605432 HC_gene_5685 70 - 604335 605432 -chrXI 605511 608445 HC_gene_5686 39 - 605511 608445 -chrXI 608777 611227 MC_gene_5687 3 - 608777 611227 -chrXI 612416 613914 HC_gene_5688 287 - 612416 613914 -chrXI 614111 614714 LC_gene_5689 1 - 614111 614714 -chrXI 615488 616001 LC_gene_5690 1 - 615488 616001 -chrXI 617652 618762 HC_gene_5691 3820 - 617652 618762 -chrXI 626185 626494 HC_gene_5692 8 - 626185 626494 -chrXI 629727 630038 LC_gene_5693 1 - 629727 630038 -chrXI 630419 631986 MC_gene_5694 1 - 630419 631986 -chrXI 632944 635317 HC_gene_5695 13 - 632944 635317 -chrXI 638449 640320 HC_gene_5696 59 - 638449 640320 -chrXI 642819 645152 LC_gene_5697 1 - 642819 645152 -chrXI 649975 650331 HC_gene_5698 59 - 649975 650331 -chrXI 652480 654514 LC_gene_5699 1 - 652480 654514 -chrXI 657899 658363 MC_gene_5700 1 - 657899 658363 -chrXI 658105 658556 MC_gene_5701 1 - 658105 658556 -chrXI 661255 662454 MC_gene_5702 3 - 661255 662454 -chrXII 13919 14349 LC_gene_5703 1 + 13919 14349 -chrXII 16217 16448 MC_gene_5704 1 + 16217 16448 -chrXII 17947 19906 HC_gene_5705 10 + 17947 19906 -chrXII 22927 23320 LC_gene_5706 1 + 22927 23320 -chrXII 23523 25381 HC_gene_5707 11 + 23523 25381 -chrXII 26240 27215 HC_gene_5708 11 + 26240 27215 -chrXII 29093 31940 HC_gene_5709 12 + 29093 31940 -chrXII 39084 39761 LC_gene_5710 1 + 39084 39761 -chrXII 40663 41292 HC_gene_5711 74 + 40663 41292 -chrXII 46814 47459 LC_gene_5712 1 + 46814 47459 -chrXII 49908 52435 HC_gene_5713 77 + 49908 52435 -chrXII 52522 52768 MC_gene_5714 1 + 52522 52768 -chrXII 63946 64336 MC_gene_5715 1 + 63946 64336 -chrXII 65831 66778 MC_gene_5716 1 + 65831 66778 -chrXII 66736 67470 MC_gene_5717 1 + 66736 67470 -chrXII 68417 70618 HC_gene_5718 11 + 68417 70618 -chrXII 73397 74994 HC_gene_5719 13 + 73397 74994 -chrXII 81357 83826 HC_gene_5720 36 + 81357 83826 -chrXII 84668 86958 HC_gene_5721 151 + 84668 86958 -chrXII 87196 88262 HC_gene_5722 150 + 87196 88262 -chrXII 88565 91436 HC_gene_5723 416 + 88565 91436 -chrXII 91588 92211 MC_gene_5724 1 + 91588 92211 -chrXII 92782 95335 HC_gene_5725 21 + 92782 95335 -chrXII 97835 98990 MC_gene_5726 2 + 97835 98990 -chrXII 99607 100472 MC_gene_5727 1 + 99607 100472 -chrXII 100793 105364 MC_gene_5728 1 + 100793 105364 -chrXII 102643 105520 MC_gene_5729 5 + 102643 105520 -chrXII 105682 108246 LC_gene_5730 1 + 105682 108246 -chrXII 109254 109668 LC_gene_5731 1 + 109254 109668 -chrXII 111840 116199 HC_gene_5732 14 + 111840 116199 -chrXII 116311 121272 HC_gene_5733 27 + 116311 121272 -chrXII 121302 121793 HC_gene_5734 265 + 121302 121793 -chrXII 121865 124958 LC_gene_5735 1 + 121865 124958 -chrXII 125479 127336 HC_gene_5736 31 + 125479 127336 -chrXII 127510 129260 HC_gene_5737 44 + 127510 129260 -chrXII 129326 131192 MC_gene_5738 1 + 129326 131192 -chrXII 130885 131295 MC_gene_5739 1 + 130885 131295 -chrXII 131697 134103 HC_gene_5740 118 + 131697 134103 -chrXII 136546 139743 HC_gene_5741 8 + 136546 139743 -chrXII 139963 140549 LC_gene_5742 1 + 139963 140549 -chrXII 141065 143021 HC_gene_5743 15 + 141065 143021 -chrXII 143195 146144 HC_gene_5744 5 + 143195 146144 -chrXII 146274 147670 HC_gene_5745 11 + 146274 147670 -chrXII 147835 150345 HC_gene_5746 14 + 147835 150345 -chrXII 151100 153450 HC_gene_5747 1 + 151100 153450 -chrXII 156517 156935 MC_gene_5748 1 + 156517 156935 -chrXII 158055 158959 HC_gene_5749 2 + 158055 158959 -chrXII 159865 161563 HC_gene_5750 33 + 159865 161563 -chrXII 164383 165574 HC_gene_5751 50 + 164383 165574 -chrXII 166385 167264 HC_gene_5752 265 + 166385 167264 -chrXII 167433 167891 MC_gene_5753 1 + 167433 167891 -chrXII 169052 169975 HC_gene_5754 42 + 169052 169975 -chrXII 171721 172104 LC_gene_5755 1 + 171721 172104 -chrXII 175172 177208 HC_gene_5756 14 + 175172 177208 -chrXII 177598 178709 HC_gene_5757 101 + 177598 178709 -chrXII 180027 181735 HC_gene_5758 77 + 180027 181735 -chrXII 183589 184345 HC_gene_5759 54 + 183589 184345 -chrXII 185076 185530 LC_gene_5760 1 + 185076 185530 -chrXII 187652 188505 HC_gene_5761 2 + 187652 188505 -chrXII 193482 193958 MC_gene_5762 1 + 193482 193958 -chrXII 193697 194203 MC_gene_5763 1 + 193697 194203 -chrXII 194401 195358 HC_gene_5764 238 + 194401 195358 -chrXII 196796 198335 MC_gene_5765 1 + 196796 198335 -chrXII 198783 199533 HC_gene_5766 134 + 198783 199533 -chrXII 201728 201934 HC_gene_5767 12 + 201728 201934 -chrXII 202982 203198 MC_gene_5768 1 + 202982 203198 -chrXII 203262 204810 HC_gene_5769 3 + 203262 204810 -chrXII 204940 208581 HC_gene_5770 17 + 204940 208581 -chrXII 208706 210438 HC_gene_5771 79 + 208706 210438 -chrXII 210845 211189 LC_gene_5772 1 + 210845 211189 -chrXII 211612 212210 MC_gene_5773 1 + 211612 212210 -chrXII 212413 213399 LC_gene_5774 1 + 212413 213399 -chrXII 221227 221651 HC_gene_5775 2 + 221227 221651 -chrXII 222336 222619 HC_gene_5776 9 + 222336 222619 -chrXII 224156 224703 HC_gene_5777 6 + 224156 224703 -chrXII 224886 225293 HC_gene_5778 8 + 224886 225293 -chrXII 228655 228880 MC_gene_5779 1 + 228655 228880 -chrXII 228899 230602 HC_gene_5780 1 + 228899 230602 -chrXII 230745 231247 HC_gene_5781 71 + 230745 231247 -chrXII 231393 231699 HC_gene_5782 3 + 231393 231699 -chrXII 231716 232072 MC_gene_5783 1 + 231716 232072 -chrXII 232417 234779 LC_gene_5784 1 + 232417 234779 -chrXII 234851 235672 HC_gene_5785 1 + 234851 235672 -chrXII 239347 239892 LC_gene_5786 1 + 239347 239892 -chrXII 242188 243746 HC_gene_5787 2043 + 242188 243746 -chrXII 244527 245620 LC_gene_5788 1 + 244527 245620 -chrXII 245577 246208 HC_gene_5789 48 + 245577 246208 -chrXII 247193 248653 HC_gene_5790 60 + 247193 248653 -chrXII 249343 250936 MC_gene_5791 1 + 249343 250936 -chrXII 253637 255086 HC_gene_5792 584 + 253637 255086 -chrXII 255239 257967 HC_gene_5793 11 + 255239 257967 -chrXII 259911 260885 MC_gene_5794 1 + 259911 260885 -chrXII 260940 262979 HC_gene_5795 250 + 260940 262979 -chrXII 263168 264070 HC_gene_5796 2355 + 263168 264070 -chrXII 264274 266397 HC_gene_5797 114 + 264274 266397 -chrXII 267117 267975 HC_gene_5798 178 + 267117 267975 -chrXII 270977 271574 HC_gene_5799 117 + 270977 271574 -chrXII 274102 275371 HC_gene_5800 1 + 274102 275371 -chrXII 278840 281030 HC_gene_5801 23 + 278840 281030 -chrXII 281186 281551 HC_gene_5802 1 + 281186 281551 -chrXII 282904 283713 HC_gene_5803 5808 + 282904 283713 -chrXII 283843 285798 HC_gene_5804 13 + 283843 285798 -chrXII 286766 287828 HC_gene_5805 118 + 286766 287828 -chrXII 287983 289377 HC_gene_5806 26 + 287983 289377 -chrXII 289425 290092 LC_gene_5807 1 + 289425 290092 -chrXII 291744 292186 MC_gene_5808 1 + 291744 292186 -chrXII 293668 293933 MC_gene_5809 1 + 293668 293933 -chrXII 296592 297276 LC_gene_5810 1 + 296592 297276 -chrXII 300973 302012 LC_gene_5811 1 + 300973 302012 -chrXII 302188 306829 HC_gene_5812 6 + 302188 306829 -chrXII 307668 308947 MC_gene_5813 1 + 307668 308947 -chrXII 316073 318123 HC_gene_5814 22 + 316073 318123 -chrXII 317956 320536 MC_gene_5815 1 + 317956 320536 -chrXII 320647 322247 HC_gene_5816 43 + 320647 322247 -chrXII 322274 323476 HC_gene_5817 12 + 322274 323476 -chrXII 323525 326310 HC_gene_5818 6 + 323525 326310 -chrXII 329685 332236 MC_gene_5819 1 + 329685 332236 -chrXII 332392 336148 HC_gene_5820 11 + 332392 336148 -chrXII 338300 339710 MC_gene_5821 1 + 338300 339710 -chrXII 339650 340981 MC_gene_5822 1 + 339650 340981 -chrXII 341233 341650 HC_gene_5823 240 + 341233 341650 -chrXII 342319 343062 HC_gene_5824 83 + 342319 343062 -chrXII 346212 347042 HC_gene_5825 88 + 346212 347042 -chrXII 364114 365799 HC_gene_5826 82 + 364114 365799 -chrXII 367250 368228 MC_gene_5827 1 + 367250 368228 -chrXII 368742 369384 HC_gene_5828 4357 + 368742 369384 -chrXII 370747 373090 HC_gene_5829 157 + 370747 373090 -chrXII 373389 374242 HC_gene_5830 5 + 373389 374242 -chrXII 377966 380713 HC_gene_5831 16 + 377966 380713 -chrXII 380853 382583 HC_gene_5832 41 + 380853 382583 -chrXII 385569 386340 HC_gene_5833 64 + 385569 386340 -chrXII 387844 390453 HC_gene_5834 34 + 387844 390453 -chrXII 390605 391320 MC_gene_5835 1 + 390605 391320 -chrXII 390897 391442 MC_gene_5836 1 + 390897 391442 -chrXII 391845 394471 HC_gene_5837 1 + 391845 394471 -chrXII 395814 396693 HC_gene_5838 7 + 395814 396693 -chrXII 398503 399627 HC_gene_5839 7 + 398503 399627 -chrXII 399631 402602 HC_gene_5840 62 + 399631 402602 -chrXII 403651 404490 LC_gene_5841 1 + 403651 404490 -chrXII 408413 412541 HC_gene_5842 17 + 408413 412541 -chrXII 413254 415683 HC_gene_5843 4 + 413254 415683 -chrXII 415757 416461 MC_gene_5844 1 + 415757 416461 -chrXII 416997 418152 HC_gene_5845 27 + 416997 418152 -chrXII 418272 421457 HC_gene_5846 101 + 418272 421457 -chrXII 423667 425186 HC_gene_5847 56 + 423667 425186 -chrXII 425306 426762 MC_gene_5848 1 + 425306 426762 -chrXII 427285 429651 HC_gene_5849 18 + 427285 429651 -chrXII 431436 432822 HC_gene_5850 68 + 431436 432822 -chrXII 433708 434154 HC_gene_5851 115 + 433708 434154 -chrXII 434609 436409 HC_gene_5852 1 + 434609 436409 -chrXII 437300 437536 HC_gene_5853 14 + 437300 437536 -chrXII 437614 438550 MC_gene_5854 1 + 437614 438550 -chrXII 440229 441606 HC_gene_5855 2778 + 440229 441606 -chrXII 441658 442419 MC_gene_5856 2 + 441658 442419 -chrXII 444051 444999 LC_gene_5857 1 + 444051 444999 -chrXII 449736 450727 HC_gene_5858 4 + 449736 450727 -chrXII 459950 460427 HC_gene_5859 11 + 459950 460427 -chrXII 460519 460842 MC_gene_5860 1 + 460519 460842 -chrXII 467944 469505 LC_gene_5861 1 + 467944 469505 -chrXII 489009 490613 MC_gene_5862 1 + 489009 490613 -chrXII 489795 490681 MC_gene_5863 1 + 489795 490681 -chrXII 490883 492690 HC_gene_5864 27 + 490883 492690 -chrXII 493527 494491 HC_gene_5865 25 + 493527 494491 -chrXII 495098 495458 MC_gene_5866 1 + 495098 495458 -chrXII 498889 499467 HC_gene_5867 10033 + 498889 499467 -chrXII 500604 501124 MC_gene_5868 1 + 500604 501124 -chrXII 500706 501157 MC_gene_5869 1 + 500706 501157 -chrXII 501301 504349 HC_gene_5870 1 + 501301 504349 -chrXII 502338 505929 HC_gene_5871 19 + 502338 505929 -chrXII 506114 507726 HC_gene_5872 813 + 506114 507726 -chrXII 510350 513015 HC_gene_5873 50 + 510350 513015 -chrXII 513237 514080 LC_gene_5874 1 + 513237 514080 -chrXII 514089 514974 HC_gene_5875 8 + 514089 514974 -chrXII 515204 516682 HC_gene_5876 943 + 515204 516682 -chrXII 517908 520473 HC_gene_5877 32 + 517908 520473 -chrXII 522640 523406 HC_gene_5878 5139 + 522640 523406 -chrXII 523574 524473 HC_gene_5879 207 + 523574 524473 -chrXII 524641 528051 HC_gene_5880 5 + 524641 528051 -chrXII 528229 530610 HC_gene_5881 20 + 528229 530610 -chrXII 534029 534711 MC_gene_5882 1 + 534029 534711 -chrXII 534834 537100 HC_gene_5883 38 + 534834 537100 -chrXII 537239 538682 HC_gene_5884 23 + 537239 538682 -chrXII 540778 541783 HC_gene_5885 21 + 540778 541783 -chrXII 542020 543289 LC_gene_5886 1 + 542020 543289 -chrXII 543478 543811 MC_gene_5887 1 + 543478 543811 -chrXII 543892 545933 HC_gene_5888 172 + 543892 545933 -chrXII 546059 547799 HC_gene_5889 872 + 546059 547799 -chrXII 547942 548732 LC_gene_5890 1 + 547942 548732 -chrXII 548992 549486 HC_gene_5891 257 + 548992 549486 -chrXII 550124 550611 HC_gene_5892 2 + 550124 550611 -chrXII 552238 552756 HC_gene_5893 193 + 552238 552756 -chrXII 554049 556511 HC_gene_5894 176 + 554049 556511 -chrXII 556777 559343 HC_gene_5895 9 + 556777 559343 -chrXII 559457 560747 HC_gene_5896 315 + 559457 560747 -chrXII 560879 561764 LC_gene_5897 1 + 560879 561764 -chrXII 561948 563564 HC_gene_5898 17 + 561948 563564 -chrXII 564089 566336 LC_gene_5899 1 + 564089 566336 -chrXII 568517 570774 HC_gene_5900 26 + 568517 570774 -chrXII 570846 572029 HC_gene_5901 1 + 570846 572029 -chrXII 572554 573468 MC_gene_5902 1 + 572554 573468 -chrXII 573976 576748 HC_gene_5903 17 + 573976 576748 -chrXII 576686 577963 HC_gene_5904 132 + 576686 577963 -chrXII 585574 586003 LC_gene_5905 1 + 585574 586003 -chrXII 586172 587660 HC_gene_5906 68 + 586172 587660 -chrXII 589316 591112 HC_gene_5907 28 + 589316 591112 -chrXII 591343 591747 HC_gene_5908 15 + 591343 591747 -chrXII 591876 592560 LC_gene_5909 1 + 591876 592560 -chrXII 592942 593439 MC_gene_5910 1 + 592942 593439 -chrXII 595726 599038 MC_gene_5911 1 + 595726 599038 -chrXII 597040 599050 MC_gene_5912 1 + 597040 599050 -chrXII 602815 603089 MC_gene_5913 1 + 602815 603089 -chrXII 603880 604206 HC_gene_5914 23 + 603880 604206 -chrXII 604211 604657 LC_gene_5915 1 + 604211 604657 -chrXII 607712 609159 MC_gene_5916 1 + 607712 609159 -chrXII 610677 612273 MC_gene_5917 1 + 610677 612273 -chrXII 612230 614369 MC_gene_5918 2 + 612230 614369 -chrXII 614680 616351 HC_gene_5919 17 + 614680 616351 -chrXII 617498 620320 HC_gene_5920 11 + 617498 620320 -chrXII 620416 622912 HC_gene_5921 40 + 620416 622912 -chrXII 624123 625364 HC_gene_5922 66 + 624123 625364 -chrXII 626516 628269 HC_gene_5923 29 + 626516 628269 -chrXII 633561 636229 HC_gene_5924 76 + 633561 636229 -chrXII 636739 640089 HC_gene_5925 2354 + 636739 640089 -chrXII 639578 640206 HC_gene_5926 1113 + 639578 640206 -chrXII 640271 641254 HC_gene_5927 131 + 640271 641254 -chrXII 641365 642439 HC_gene_5928 25 + 641365 642439 -chrXII 642552 644429 HC_gene_5929 21 + 642552 644429 -chrXII 645322 645883 MC_gene_5930 1 + 645322 645883 -chrXII 646126 648363 HC_gene_5931 3 + 646126 648363 -chrXII 650098 651162 HC_gene_5932 5 + 650098 651162 -chrXII 653225 656838 HC_gene_5933 1 + 653225 656838 -chrXII 656905 657296 MC_gene_5934 1 + 656905 657296 -chrXII 657326 657925 HC_gene_5935 17 + 657326 657925 -chrXII 658471 658736 HC_gene_5936 3 + 658471 658736 -chrXII 659053 659889 HC_gene_5937 288 + 659053 659889 -chrXII 660647 663212 HC_gene_5938 118 + 660647 663212 -chrXII 665745 668124 HC_gene_5939 9 + 665745 668124 -chrXII 669201 669477 HC_gene_5940 5 + 669201 669477 -chrXII 669849 670188 HC_gene_5941 6 + 669849 670188 -chrXII 673106 673982 HC_gene_5942 846 + 673106 673982 -chrXII 675687 676487 MC_gene_5943 2 + 675687 676487 -chrXII 677938 678227 HC_gene_5944 3 + 677938 678227 -chrXII 678142 680063 HC_gene_5945 3 + 678142 680063 -chrXII 680159 681038 HC_gene_5946 97 + 680159 681038 -chrXII 681074 682456 HC_gene_5947 67 + 681074 682456 -chrXII 682393 683791 HC_gene_5948 44 + 682393 683791 -chrXII 683701 685502 LC_gene_5949 1 + 683701 685502 -chrXII 687305 687672 MC_gene_5950 1 + 687305 687672 -chrXII 688368 690146 LC_gene_5951 1 + 688368 690146 -chrXII 691533 694015 HC_gene_5952 17 + 691533 694015 -chrXII 694327 695071 HC_gene_5953 79 + 694327 695071 -chrXII 699857 702261 HC_gene_5954 2 + 699857 702261 -chrXII 704265 704643 LC_gene_5955 1 + 704265 704643 -chrXII 705167 706182 HC_gene_5956 27 + 705167 706182 -chrXII 707324 709078 HC_gene_5957 195 + 707324 709078 -chrXII 710898 711240 MC_gene_5958 1 + 710898 711240 -chrXII 713516 714732 MC_gene_5959 1 + 713516 714732 -chrXII 715057 717141 HC_gene_5960 4 + 715057 717141 -chrXII 721702 721802 MC_gene_5961 1 + 721702 721802 -chrXII 721763 722363 MC_gene_5962 1 + 721763 722363 -chrXII 723813 724052 HC_gene_5963 1 + 723813 724052 -chrXII 723884 724731 HC_gene_5964 31 + 723884 724731 -chrXII 724943 725385 LC_gene_5965 1 + 724943 725385 -chrXII 725633 725940 HC_gene_5966 15 + 725633 725940 -chrXII 725888 728233 HC_gene_5967 14 + 725888 728233 -chrXII 728855 730532 HC_gene_5968 1306 + 728855 730532 -chrXII 730792 731688 HC_gene_5969 232 + 730792 731688 -chrXII 732397 733985 MC_gene_5970 1 + 732397 733985 -chrXII 732509 734689 MC_gene_5971 3 + 732509 734689 -chrXII 735045 735686 MC_gene_5972 1 + 735045 735686 -chrXII 738059 738387 LC_gene_5973 1 + 738059 738387 -chrXII 744080 744918 HC_gene_5974 44 + 744080 744918 -chrXII 751070 752022 LC_gene_5975 1 + 751070 752022 -chrXII 757352 758824 HC_gene_5976 1 + 757352 758824 -chrXII 759466 760401 HC_gene_5977 97 + 759466 760401 -chrXII 761799 762565 LC_gene_5978 1 + 761799 762565 -chrXII 764771 766231 HC_gene_5979 3 + 764771 766231 -chrXII 766570 769227 HC_gene_5980 4 + 766570 769227 -chrXII 771922 776367 HC_gene_5981 11 + 771922 776367 -chrXII 778274 778926 LC_gene_5982 1 + 778274 778926 -chrXII 779142 780895 HC_gene_5983 43 + 779142 780895 -chrXII 781268 782000 LC_gene_5984 1 + 781268 782000 -chrXII 782097 783025 HC_gene_5985 62 + 782097 783025 -chrXII 784700 786291 HC_gene_5986 46 + 784700 786291 -chrXII 787651 789825 HC_gene_5987 226 + 787651 789825 -chrXII 790303 791994 HC_gene_5988 117 + 790303 791994 -chrXII 793174 793503 HC_gene_5989 2 + 793174 793503 -chrXII 793927 794395 LC_gene_5990 1 + 793927 794395 -chrXII 795360 796135 LC_gene_5991 1 + 795360 796135 -chrXII 796716 797113 MC_gene_5992 2 + 796716 797113 -chrXII 797405 799716 HC_gene_5993 34 + 797405 799716 -chrXII 804435 805214 LC_gene_5994 1 + 804435 805214 -chrXII 805825 806911 HC_gene_5995 7812 + 805825 806911 -chrXII 806909 809625 MC_gene_5996 1 + 806909 809625 -chrXII 809739 817827 HC_gene_5997 657 + 809739 817827 -chrXII 818046 818414 LC_gene_5998 1 + 818046 818414 -chrXII 819293 820509 HC_gene_5999 1990 + 819293 820509 -chrXII 820472 822267 HC_gene_6000 8 + 820472 822267 -chrXII 822601 823363 MC_gene_6001 1 + 822601 823363 -chrXII 823067 824260 MC_gene_6002 1 + 823067 824260 -chrXII 826723 826984 MC_gene_6003 1 + 826723 826984 -chrXII 828296 828644 HC_gene_6004 1 + 828296 828644 -chrXII 828681 829521 HC_gene_6005 287 + 828681 829521 -chrXII 830999 833637 HC_gene_6006 6 + 830999 833637 -chrXII 833878 836316 HC_gene_6007 8 + 833878 836316 -chrXII 839914 840147 LC_gene_6008 1 + 839914 840147 -chrXII 840288 841123 HC_gene_6009 84 + 840288 841123 -chrXII 841285 844193 HC_gene_6010 45 + 841285 844193 -chrXII 844206 845865 HC_gene_6011 631 + 844206 845865 -chrXII 846027 847562 HC_gene_6012 16 + 846027 847562 -chrXII 849071 849401 MC_gene_6013 1 + 849071 849401 -chrXII 849834 852224 HC_gene_6014 9 + 849834 852224 -chrXII 853431 855428 HC_gene_6015 159 + 853431 855428 -chrXII 855835 857520 HC_gene_6016 943 + 855835 857520 -chrXII 857462 859381 HC_gene_6017 15 + 857462 859381 -chrXII 859311 861651 HC_gene_6018 21 + 859311 861651 -chrXII 862517 863596 MC_gene_6019 1 + 862517 863596 -chrXII 864930 866959 HC_gene_6020 9 + 864930 866959 -chrXII 867180 868716 HC_gene_6021 582 + 867180 868716 -chrXII 871658 872820 HC_gene_6022 170 + 871658 872820 -chrXII 873734 874978 HC_gene_6023 3 + 873734 874978 -chrXII 878187 879569 HC_gene_6024 58 + 878187 879569 -chrXII 879692 882001 HC_gene_6025 5 + 879692 882001 -chrXII 884984 888683 HC_gene_6026 6 + 884984 888683 -chrXII 893604 896447 HC_gene_6027 10 + 893604 896447 -chrXII 898004 898896 HC_gene_6028 340 + 898004 898896 -chrXII 899179 899874 HC_gene_6029 86 + 899179 899874 -chrXII 902893 903485 HC_gene_6030 113 + 902893 903485 -chrXII 903668 904666 HC_gene_6031 1898 + 903668 904666 -chrXII 906635 906905 MC_gene_6032 1 + 906635 906905 -chrXII 907034 909492 HC_gene_6033 4 + 907034 909492 -chrXII 910259 911342 HC_gene_6034 3 + 910259 911342 -chrXII 912025 912489 MC_gene_6035 1 + 912025 912489 -chrXII 914981 916490 LC_gene_6036 1 + 914981 916490 -chrXII 918042 919062 LC_gene_6037 1 + 918042 919062 -chrXII 919284 920050 MC_gene_6038 1 + 919284 920050 -chrXII 924952 925692 HC_gene_6039 18 + 924952 925692 -chrXII 926102 928081 HC_gene_6040 17 + 926102 928081 -chrXII 928704 929725 HC_gene_6041 26 + 928704 929725 -chrXII 929789 931041 HC_gene_6042 51 + 929789 931041 -chrXII 931600 932354 LC_gene_6043 1 + 931600 932354 -chrXII 932722 933879 HC_gene_6044 53 + 932722 933879 -chrXII 934456 935043 LC_gene_6045 1 + 934456 935043 -chrXII 937490 941085 HC_gene_6046 24 + 937490 941085 -chrXII 945900 947107 MC_gene_6047 1 + 945900 947107 -chrXII 947253 948125 MC_gene_6048 1 + 947253 948125 -chrXII 947505 948146 MC_gene_6049 1 + 947505 948146 -chrXII 948349 950181 HC_gene_6050 74 + 948349 950181 -chrXII 951107 953351 HC_gene_6051 272 + 951107 953351 -chrXII 954921 956797 HC_gene_6052 25 + 954921 956797 -chrXII 958365 962790 HC_gene_6053 6 + 958365 962790 -chrXII 963760 965028 HC_gene_6054 185 + 963760 965028 -chrXII 965792 966519 HC_gene_6055 4 + 965792 966519 -chrXII 967637 968332 MC_gene_6056 1 + 967637 968332 -chrXII 968200 969548 MC_gene_6057 1 + 968200 969548 -chrXII 971454 971853 HC_gene_6058 8 + 971454 971853 -chrXII 973363 975658 HC_gene_6059 6 + 973363 975658 -chrXII 980423 981591 LC_gene_6060 1 + 980423 981591 -chrXII 982711 986889 HC_gene_6061 3 + 982711 986889 -chrXII 987035 988193 HC_gene_6062 27 + 987035 988193 -chrXII 988332 990604 HC_gene_6063 33 + 988332 990604 -chrXII 990733 992849 HC_gene_6064 158 + 990733 992849 -chrXII 993134 993434 HC_gene_6065 4 + 993134 993434 -chrXII 998911 1000215 HC_gene_6066 18 + 998911 1000215 -chrXII 1002448 1004365 HC_gene_6067 365 + 1002448 1004365 -chrXII 1003183 1004570 HC_gene_6068 36 + 1003183 1004570 -chrXII 1006323 1007146 HC_gene_6069 279 + 1006323 1007146 -chrXII 1010968 1011382 HC_gene_6070 3 + 1010968 1011382 -chrXII 1011570 1012213 MC_gene_6071 1 + 1011570 1012213 -chrXII 1012459 1013895 MC_gene_6072 4 + 1012459 1013895 -chrXII 1014456 1015593 HC_gene_6073 37 + 1014456 1015593 -chrXII 1017869 1018177 LC_gene_6074 1 + 1017869 1018177 -chrXII 1019316 1020273 LC_gene_6075 1 + 1019316 1020273 -chrXII 1022490 1024074 HC_gene_6076 26 + 1022490 1024074 -chrXII 1025176 1025603 HC_gene_6077 1 + 1025176 1025603 -chrXII 1026854 1027809 LC_gene_6078 1 + 1026854 1027809 -chrXII 1028795 1030080 HC_gene_6079 1455 + 1028795 1030080 -chrXII 1030226 1030622 HC_gene_6080 1 + 1030226 1030622 -chrXII 1030793 1032337 HC_gene_6081 361 + 1030793 1032337 -chrXII 1032442 1035900 HC_gene_6082 9 + 1032442 1035900 -chrXII 1035976 1039145 HC_gene_6083 8 + 1035976 1039145 -chrXII 1041751 1043070 HC_gene_6084 11 + 1041751 1043070 -chrXII 1043880 1045083 HC_gene_6085 1 + 1043880 1045083 -chrXII 1047637 1051963 HC_gene_6086 21 + 1047637 1051963 -chrXII 1053415 1054958 HC_gene_6087 55 + 1053415 1054958 -chrXII 1055056 1056065 HC_gene_6088 27 + 1055056 1056065 -chrXII 1057293 1059170 HC_gene_6089 44 + 1057293 1059170 -chrXII 1059361 1059727 LC_gene_6090 1 + 1059361 1059727 -chrXII 1061937 1063415 LC_gene_6091 1 + 1061937 1063415 -chrXII 1069293 1077905 LC_gene_6092 1 + 1069293 1077905 -chrXII 442 10717 LC_gene_6093 1 - 442 10717 -chrXII 14489 16031 HC_gene_6094 4 - 14489 16031 -chrXII 16513 17662 HC_gene_6095 14 - 16513 17662 -chrXII 17862 19844 LC_gene_6096 1 - 17862 19844 -chrXII 20168 20857 MC_gene_6097 1 - 20168 20857 -chrXII 20905 22685 HC_gene_6098 25 - 20905 22685 -chrXII 22773 23197 MC_gene_6099 1 - 22773 23197 -chrXII 25563 26063 HC_gene_6100 3 - 25563 26063 -chrXII 27286 29247 HC_gene_6101 6 - 27286 29247 -chrXII 32309 35233 HC_gene_6102 1 - 32309 35233 -chrXII 35402 36384 HC_gene_6103 3 - 35402 36384 -chrXII 37149 39494 HC_gene_6104 29 - 37149 39494 -chrXII 39677 40440 HC_gene_6105 89 - 39677 40440 -chrXII 40859 43022 HC_gene_6106 36 - 40859 43022 -chrXII 43066 43771 HC_gene_6107 1 - 43066 43771 -chrXII 45503 46434 HC_gene_6108 16 - 45503 46434 -chrXII 46478 47078 MC_gene_6109 1 - 46478 47078 -chrXII 47779 48706 HC_gene_6110 4197 - 47779 48706 -chrXII 49329 49594 MC_gene_6111 1 - 49329 49594 -chrXII 51983 52639 HC_gene_6112 35 - 51983 52639 -chrXII 52738 53976 HC_gene_6113 55 - 52738 53976 -chrXII 54144 54939 HC_gene_6114 12 - 54144 54939 -chrXII 61877 63750 HC_gene_6115 3 - 61877 63750 -chrXII 63937 66556 HC_gene_6116 243 - 63937 66556 -chrXII 66658 68268 HC_gene_6117 44 - 66658 68268 -chrXII 70481 73185 HC_gene_6118 44 - 70481 73185 -chrXII 73902 76828 HC_gene_6119 10 - 73902 76828 -chrXII 77009 80262 HC_gene_6120 16 - 77009 80262 -chrXII 81410 82061 LC_gene_6121 1 - 81410 82061 -chrXII 83164 83620 MC_gene_6122 1 - 83164 83620 -chrXII 83645 84078 MC_gene_6123 1 - 83645 84078 -chrXII 84673 86174 LC_gene_6124 1 - 84673 86174 -chrXII 88150 88380 HC_gene_6125 2 - 88150 88380 -chrXII 91616 92304 LC_gene_6126 1 - 91616 92304 -chrXII 94601 95110 MC_gene_6127 1 - 94601 95110 -chrXII 95367 97516 HC_gene_6128 172 - 95367 97516 -chrXII 97930 98867 HC_gene_6129 197 - 97930 98867 -chrXII 98918 100194 HC_gene_6130 50 - 98918 100194 -chrXII 105537 107416 HC_gene_6131 19 - 105537 107416 -chrXII 108072 109027 HC_gene_6132 65 - 108072 109027 -chrXII 109755 111605 HC_gene_6133 557 - 109755 111605 -chrXII 112190 114313 HC_gene_6134 4 - 112190 114313 -chrXII 115695 116102 LC_gene_6135 1 - 115695 116102 -chrXII 121675 124986 HC_gene_6136 37 - 121675 124986 -chrXII 125363 125818 MC_gene_6137 1 - 125363 125818 -chrXII 129093 130856 HC_gene_6138 22 - 129093 130856 -chrXII 131083 131452 HC_gene_6139 285 - 131083 131452 -chrXII 134024 136387 HC_gene_6140 13 - 134024 136387 -chrXII 137845 138249 MC_gene_6141 1 - 137845 138249 -chrXII 143034 143743 LC_gene_6142 1 - 143034 143743 -chrXII 146032 147084 LC_gene_6143 1 - 146032 147084 -chrXII 151313 153989 HC_gene_6144 10 - 151313 153989 -chrXII 154297 156365 HC_gene_6145 63 - 154297 156365 -chrXII 156764 157752 HC_gene_6146 106 - 156764 157752 -chrXII 157858 159658 MC_gene_6147 1 - 157858 159658 -chrXII 159487 159859 MC_gene_6148 1 - 159487 159859 -chrXII 161492 164069 MC_gene_6149 3 - 161492 164069 -chrXII 164520 165173 MC_gene_6150 1 - 164520 165173 -chrXII 165301 166195 HC_gene_6151 157 - 165301 166195 -chrXII 167136 167814 HC_gene_6152 30 - 167136 167814 -chrXII 169035 169475 MC_gene_6153 1 - 169035 169475 -chrXII 169758 170318 MC_gene_6154 1 - 169758 170318 -chrXII 170881 171657 LC_gene_6155 1 - 170881 171657 -chrXII 171969 175019 HC_gene_6156 4 - 171969 175019 -chrXII 176473 177459 HC_gene_6157 87 - 176473 177459 -chrXII 178600 179663 HC_gene_6158 66 - 178600 179663 -chrXII 181538 183455 HC_gene_6159 53 - 181538 183455 -chrXII 184107 184951 HC_gene_6160 117 - 184107 184951 -chrXII 184994 185147 HC_gene_6161 1 - 184994 185147 -chrXII 185001 187318 HC_gene_6162 25 - 185001 187318 -chrXII 187295 193459 MC_gene_6163 6 - 187295 193459 -chrXII 195329 196585 HC_gene_6164 38 - 195329 196585 -chrXII 196789 198114 HC_gene_6165 507 - 196789 198114 -chrXII 199440 201460 HC_gene_6166 274 - 199440 201460 -chrXII 201879 202705 HC_gene_6167 4789 - 201879 202705 -chrXII 203135 204718 HC_gene_6168 5 - 203135 204718 -chrXII 210323 212099 HC_gene_6169 89 - 210323 212099 -chrXII 212022 214479 HC_gene_6170 7 - 212022 214479 -chrXII 214878 215723 MC_gene_6171 1 - 214878 215723 -chrXII 215127 220762 MC_gene_6172 1 - 215127 220762 -chrXII 221087 222173 HC_gene_6173 56 - 221087 222173 -chrXII 222547 224577 HC_gene_6174 1 - 222547 224577 -chrXII 224601 225254 HC_gene_6175 333 - 224601 225254 -chrXII 224760 228502 HC_gene_6176 7 - 224760 228502 -chrXII 228773 229705 HC_gene_6177 482 - 228773 229705 -chrXII 229856 230484 HC_gene_6178 82 - 229856 230484 -chrXII 230539 231192 HC_gene_6179 2 - 230539 231192 -chrXII 231404 232060 HC_gene_6180 530 - 231404 232060 -chrXII 232311 234112 HC_gene_6181 13976 - 232311 234112 -chrXII 234795 237714 HC_gene_6182 11 - 234795 237714 -chrXII 237963 241681 HC_gene_6183 4 - 237963 241681 -chrXII 243780 245350 HC_gene_6184 41 - 243780 245350 -chrXII 245480 246255 HC_gene_6185 125 - 245480 246255 -chrXII 246232 247013 HC_gene_6186 242 - 246232 247013 -chrXII 247992 248448 MC_gene_6187 1 - 247992 248448 -chrXII 248481 249165 HC_gene_6188 3 - 248481 249165 -chrXII 251212 253139 HC_gene_6189 38 - 251212 253139 -chrXII 254668 255017 LC_gene_6190 1 - 254668 255017 -chrXII 257863 260518 HC_gene_6191 1323 - 257863 260518 -chrXII 262776 263228 LC_gene_6192 1 - 262776 263228 -chrXII 263942 264829 LC_gene_6193 1 - 263942 264829 -chrXII 264898 265268 HC_gene_6194 1 - 264898 265268 -chrXII 265635 266204 LC_gene_6195 1 - 265635 266204 -chrXII 266266 266950 HC_gene_6196 334 - 266266 266950 -chrXII 267718 268142 HC_gene_6197 6 - 267718 268142 -chrXII 269506 270801 HC_gene_6198 1 - 269506 270801 -chrXII 271498 273932 HC_gene_6199 41 - 271498 273932 -chrXII 274043 275235 MC_gene_6200 1 - 274043 275235 -chrXII 275232 278656 HC_gene_6201 16 - 275232 278656 -chrXII 280937 281706 HC_gene_6202 62 - 280937 281706 -chrXII 281718 282793 HC_gene_6203 296 - 281718 282793 -chrXII 285643 286613 HC_gene_6204 73 - 285643 286613 -chrXII 287706 288642 LC_gene_6205 1 - 287706 288642 -chrXII 289339 289635 MC_gene_6206 1 - 289339 289635 -chrXII 289964 291712 HC_gene_6207 3 - 289964 291712 -chrXII 292041 293629 HC_gene_6208 17 - 292041 293629 -chrXII 293922 296183 HC_gene_6209 147 - 293922 296183 -chrXII 296493 300402 HC_gene_6210 10 - 296493 300402 -chrXII 300564 302009 HC_gene_6211 26 - 300564 302009 -chrXII 302089 302893 LC_gene_6212 1 - 302089 302893 -chrXII 306770 307392 HC_gene_6213 6 - 306770 307392 -chrXII 308842 310029 MC_gene_6214 1 - 308842 310029 -chrXII 310273 312717 MC_gene_6215 1 - 310273 312717 -chrXII 314266 315894 HC_gene_6216 3 - 314266 315894 -chrXII 318038 320320 HC_gene_6217 176 - 318038 320320 -chrXII 322077 324761 MC_gene_6218 1 - 322077 324761 -chrXII 322772 325200 MC_gene_6219 1 - 322772 325200 -chrXII 326330 327471 HC_gene_6220 143 - 326330 327471 -chrXII 327608 329277 HC_gene_6221 56 - 327608 329277 -chrXII 329612 332153 HC_gene_6222 19 - 329612 332153 -chrXII 335990 336896 HC_gene_6223 11 - 335990 336896 -chrXII 336118 337343 HC_gene_6224 44 - 336118 337343 -chrXII 337397 339666 HC_gene_6225 10 - 337397 339666 -chrXII 339620 340951 HC_gene_6226 98 - 339620 340951 -chrXII 342827 343781 HC_gene_6227 31 - 342827 343781 -chrXII 343922 345996 HC_gene_6228 5 - 343922 345996 -chrXII 346964 348220 HC_gene_6229 55 - 346964 348220 -chrXII 348824 351558 HC_gene_6230 167 - 348824 351558 -chrXII 352592 355191 MC_gene_6231 2 - 352592 355191 -chrXII 354588 357042 MC_gene_6232 1 - 354588 357042 -chrXII 359357 363867 HC_gene_6233 6 - 359357 363867 -chrXII 365687 366120 HC_gene_6234 11 - 365687 366120 -chrXII 366494 369339 HC_gene_6235 5 - 366494 369339 -chrXII 369559 370141 HC_gene_6236 23147 - 369559 370141 -chrXII 371848 372970 MC_gene_6237 1 - 371848 372970 -chrXII 373785 374212 LC_gene_6238 1 - 373785 374212 -chrXII 374548 377304 HC_gene_6239 52 - 374548 377304 -chrXII 382284 384535 MC_gene_6240 5 - 382284 384535 -chrXII 384618 385444 HC_gene_6241 123 - 384618 385444 -chrXII 386121 390297 HC_gene_6242 258 - 386121 390297 -chrXII 390216 391714 HC_gene_6243 6 - 390216 391714 -chrXII 394532 395600 HC_gene_6244 60 - 394532 395600 -chrXII 395541 396649 MC_gene_6245 1 - 395541 396649 -chrXII 396601 398390 HC_gene_6246 4 - 396601 398390 -chrXII 398914 399410 MC_gene_6247 1 - 398914 399410 -chrXII 402453 404170 HC_gene_6248 33 - 402453 404170 -chrXII 404436 408217 HC_gene_6249 19 - 404436 408217 -chrXII 410420 411146 MC_gene_6250 1 - 410420 411146 -chrXII 412431 412761 HC_gene_6251 3 - 412431 412761 -chrXII 412913 413419 MC_gene_6252 1 - 412913 413419 -chrXII 414412 415532 HC_gene_6253 3 - 414412 415532 -chrXII 415533 416700 HC_gene_6254 2 - 415533 416700 -chrXII 416806 418083 MC_gene_6255 1 - 416806 418083 -chrXII 421353 423496 HC_gene_6256 4 - 421353 423496 -chrXII 423365 423853 HC_gene_6257 4 - 423365 423853 -chrXII 423464 423868 HC_gene_6258 11 - 423464 423868 -chrXII 425107 426065 MC_gene_6259 1 - 425107 426065 -chrXII 426679 427035 LC_gene_6260 1 - 426679 427035 -chrXII 429340 432030 HC_gene_6261 7 - 429340 432030 -chrXII 432736 433768 HC_gene_6262 73 - 432736 433768 -chrXII 434048 434485 HC_gene_6263 166 - 434048 434485 -chrXII 437432 439877 HC_gene_6264 2 - 437432 439877 -chrXII 441447 442739 HC_gene_6265 4 - 441447 442739 -chrXII 442869 445091 HC_gene_6266 41 - 442869 445091 -chrXII 445115 447644 HC_gene_6267 369 - 445115 447644 -chrXII 447560 448367 HC_gene_6268 173 - 447560 448367 -chrXII 449016 449389 MC_gene_6269 1 - 449016 449389 -chrXII 449092 449609 MC_gene_6270 1 - 449092 449609 -chrXII 451266 451503 LC_gene_6271 1 - 451266 451503 -chrXII 458670 459956 MC_gene_6272 1 - 458670 459956 -chrXII 460126 460680 MC_gene_6273 2 - 460126 460680 -chrXII 460922 461657 MC_gene_6274 1 - 460922 461657 -chrXII 463028 463956 MC_gene_6275 1 - 463028 463956 -chrXII 464934 466869 MC_gene_6276 1 - 464934 466869 -chrXII 468230 476857 LC_gene_6277 1 - 468230 476857 -chrXII 489753 490546 MC_gene_6278 1 - 489753 490546 -chrXII 491717 493280 HC_gene_6279 27 - 491717 493280 -chrXII 493311 494210 MC_gene_6280 1 - 493311 494210 -chrXII 494414 495251 HC_gene_6281 41 - 494414 495251 -chrXII 495174 498546 HC_gene_6282 25 - 495174 498546 -chrXII 499448 500326 HC_gene_6283 69 - 499448 500326 -chrXII 500359 501092 HC_gene_6284 164 - 500359 501092 -chrXII 501185 502170 HC_gene_6285 277 - 501185 502170 -chrXII 503743 504057 MC_gene_6286 1 - 503743 504057 -chrXII 505363 505816 MC_gene_6287 1 - 505363 505816 -chrXII 507698 510761 HC_gene_6288 4 - 507698 510761 -chrXII 510973 511852 LC_gene_6289 1 - 510973 511852 -chrXII 512490 512920 LC_gene_6290 1 - 512490 512920 -chrXII 513106 513847 HC_gene_6291 132 - 513106 513847 -chrXII 514013 514779 HC_gene_6292 1079 - 514013 514779 -chrXII 516572 517741 HC_gene_6293 107 - 516572 517741 -chrXII 520385 522060 HC_gene_6294 32 - 520385 522060 -chrXII 522285 522896 LC_gene_6295 1 - 522285 522896 -chrXII 530697 534469 HC_gene_6296 7 - 530697 534469 -chrXII 535112 536983 LC_gene_6297 1 - 535112 536983 -chrXII 538389 539639 HC_gene_6298 351 - 538389 539639 -chrXII 539839 540557 HC_gene_6299 87 - 539839 540557 -chrXII 540742 543326 HC_gene_6300 369 - 540742 543326 -chrXII 547722 548814 HC_gene_6301 54 - 547722 548814 -chrXII 549407 550341 HC_gene_6302 82 - 549407 550341 -chrXII 550568 552017 HC_gene_6303 80 - 550568 552017 -chrXII 552559 553835 MC_gene_6304 2 - 552559 553835 -chrXII 553708 554205 MC_gene_6305 1 - 553708 554205 -chrXII 560665 561757 HC_gene_6306 110 - 560665 561757 -chrXII 563425 564582 HC_gene_6307 22 - 563425 564582 -chrXII 564703 566297 HC_gene_6308 25 - 564703 566297 -chrXII 566460 567921 HC_gene_6309 1 - 566460 567921 -chrXII 568570 569970 MC_gene_6310 2 - 568570 569970 -chrXII 570640 571895 HC_gene_6311 22 - 570640 571895 -chrXII 572038 573231 HC_gene_6312 530 - 572038 573231 -chrXII 573179 573820 HC_gene_6313 118 - 573179 573820 -chrXII 576083 576377 LC_gene_6314 1 - 576083 576377 -chrXII 578132 579046 HC_gene_6315 220 - 578132 579046 -chrXII 579216 581791 HC_gene_6316 57 - 579216 581791 -chrXII 582036 585803 HC_gene_6317 29 - 582036 585803 -chrXII 587570 588960 HC_gene_6318 149 - 587570 588960 -chrXII 590434 593191 HC_gene_6319 45 - 590434 593191 -chrXII 599818 602667 HC_gene_6320 21 - 599818 602667 -chrXII 603369 603869 HC_gene_6321 13 - 603369 603869 -chrXII 604120 604996 HC_gene_6322 463 - 604120 604996 -chrXII 605182 605390 MC_gene_6323 1 - 605182 605390 -chrXII 605615 607147 HC_gene_6324 57 - 605615 607147 -chrXII 607927 609571 HC_gene_6325 4 - 607927 609571 -chrXII 609716 612786 MC_gene_6326 1 - 609716 612786 -chrXII 614266 614580 HC_gene_6327 27 - 614266 614580 -chrXII 616221 617334 HC_gene_6328 22 - 616221 617334 -chrXII 618603 619336 LC_gene_6329 1 - 618603 619336 -chrXII 620164 623930 HC_gene_6330 20 - 620164 623930 -chrXII 625004 626949 HC_gene_6331 386 - 625004 626949 -chrXII 628601 629105 HC_gene_6332 8 - 628601 629105 -chrXII 631637 632168 HC_gene_6333 1 - 631637 632168 -chrXII 632883 633943 LC_gene_6334 1 - 632883 633943 -chrXII 636117 636310 LC_gene_6335 1 - 636117 636310 -chrXII 641271 641626 MC_gene_6336 1 - 641271 641626 -chrXII 641943 642339 HC_gene_6337 1 - 641943 642339 -chrXII 644188 645749 HC_gene_6338 97 - 644188 645749 -chrXII 649295 650789 HC_gene_6339 37 - 649295 650789 -chrXII 656782 656965 MC_gene_6340 1 - 656782 656965 -chrXII 657057 658252 HC_gene_6341 52 - 657057 658252 -chrXII 658665 659526 LC_gene_6342 1 - 658665 659526 -chrXII 659704 660219 MC_gene_6343 1 - 659704 660219 -chrXII 659769 661407 MC_gene_6344 2 - 659769 661407 -chrXII 663081 665580 HC_gene_6345 776 - 663081 665580 -chrXII 666552 667524 MC_gene_6346 1 - 666552 667524 -chrXII 667863 668932 HC_gene_6347 180 - 667863 668932 -chrXII 669151 669701 HC_gene_6348 1289 - 669151 669701 -chrXII 669206 670050 HC_gene_6349 9 - 669206 670050 -chrXII 671810 672582 LC_gene_6350 1 - 671810 672582 -chrXII 674234 677500 HC_gene_6351 97 - 674234 677500 -chrXII 678795 679946 HC_gene_6352 1 - 678795 679946 -chrXII 682347 682591 MC_gene_6353 1 - 682347 682591 -chrXII 683596 687295 HC_gene_6354 1 - 683596 687295 -chrXII 687701 687884 MC_gene_6355 1 - 687701 687884 -chrXII 687788 688383 MC_gene_6356 1 - 687788 688383 -chrXII 688927 691203 HC_gene_6357 5 - 688927 691203 -chrXII 693943 694155 LC_gene_6358 1 - 693943 694155 -chrXII 694968 696927 HC_gene_6359 125 - 694968 696927 -chrXII 697080 699644 HC_gene_6360 6 - 697080 699644 -chrXII 699844 700769 HC_gene_6361 19 - 699844 700769 -chrXII 699952 704057 HC_gene_6362 2 - 699952 704057 -chrXII 704159 704975 HC_gene_6363 1 - 704159 704975 -chrXII 706111 707137 HC_gene_6364 21 - 706111 707137 -chrXII 708145 709771 HC_gene_6365 702 - 708145 709771 -chrXII 710210 712126 HC_gene_6366 59 - 710210 712126 -chrXII 712347 712737 HC_gene_6367 4502 - 712347 712737 -chrXII 713002 714923 HC_gene_6368 14 - 713002 714923 -chrXII 716964 717989 HC_gene_6369 132 - 716964 717989 -chrXII 718130 719495 HC_gene_6370 123 - 718130 719495 -chrXII 719602 720385 HC_gene_6371 236 - 719602 720385 -chrXII 720627 721454 HC_gene_6372 2496 - 720627 721454 -chrXII 721746 722418 HC_gene_6373 500 - 721746 722418 -chrXII 724511 725428 HC_gene_6374 72 - 724511 725428 -chrXII 725818 727063 MC_gene_6375 1 - 725818 727063 -chrXII 727593 727889 LC_gene_6376 1 - 727593 727889 -chrXII 728066 728561 LC_gene_6377 1 - 728066 728561 -chrXII 732004 733911 LC_gene_6378 1 - 732004 733911 -chrXII 733951 734493 LC_gene_6379 1 - 733951 734493 -chrXII 735032 736492 HC_gene_6380 442 - 735032 736492 -chrXII 737357 737588 HC_gene_6381 1 - 737357 737588 -chrXII 738106 743916 HC_gene_6382 2 - 738106 743916 -chrXII 744128 745001 LC_gene_6383 1 - 744128 745001 -chrXII 747192 748202 MC_gene_6384 1 - 747192 748202 -chrXII 748832 751791 HC_gene_6385 68 - 748832 751791 -chrXII 751965 757154 HC_gene_6386 34 - 751965 757154 -chrXII 757334 759028 HC_gene_6387 3 - 757334 759028 -chrXII 760303 762387 HC_gene_6388 7 - 760303 762387 -chrXII 762434 764208 HC_gene_6389 86 - 762434 764208 -chrXII 764742 765039 LC_gene_6390 1 - 764742 765039 -chrXII 765141 766383 HC_gene_6391 30 - 765141 766383 -chrXII 769131 771726 HC_gene_6392 13 - 769131 771726 -chrXII 776273 777876 HC_gene_6393 55 - 776273 777876 -chrXII 777911 778989 HC_gene_6394 18 - 777911 778989 -chrXII 780875 781400 HC_gene_6395 4623 - 780875 781400 -chrXII 782130 782720 LC_gene_6396 1 - 782130 782720 -chrXII 782952 783657 HC_gene_6397 255 - 782952 783657 -chrXII 786723 787400 HC_gene_6398 3 - 786723 787400 -chrXII 789445 789714 MC_gene_6399 1 - 789445 789714 -chrXII 789696 790383 MC_gene_6400 1 - 789696 790383 -chrXII 791898 793188 MC_gene_6401 1 - 791898 793188 -chrXII 793288 793545 LC_gene_6402 1 - 793288 793545 -chrXII 794180 795213 HC_gene_6403 72 - 794180 795213 -chrXII 795413 796368 HC_gene_6404 2401 - 795413 796368 -chrXII 797709 798933 LC_gene_6405 1 - 797709 798933 -chrXII 799618 802424 HC_gene_6406 22 - 799618 802424 -chrXII 802527 805172 HC_gene_6407 69 - 802527 805172 -chrXII 806821 808841 HC_gene_6408 14 - 806821 808841 -chrXII 815948 816819 MC_gene_6409 1 - 815948 816819 -chrXII 817052 817440 MC_gene_6410 1 - 817052 817440 -chrXII 817729 818363 HC_gene_6411 77 - 817729 818363 -chrXII 822131 822647 HC_gene_6412 124 - 822131 822647 -chrXII 823288 826540 HC_gene_6413 47 - 823288 826540 -chrXII 826859 827904 HC_gene_6414 130 - 826859 827904 -chrXII 827866 828333 HC_gene_6415 15 - 827866 828333 -chrXII 829354 830379 HC_gene_6416 211 - 829354 830379 -chrXII 831056 832263 LC_gene_6417 1 - 831056 832263 -chrXII 832474 833662 LC_gene_6418 1 - 832474 833662 -chrXII 836189 837399 HC_gene_6419 585 - 836189 837399 -chrXII 837453 839333 HC_gene_6420 1298 - 837453 839333 -chrXII 840274 841080 LC_gene_6421 1 - 840274 841080 -chrXII 845069 845595 LC_gene_6422 1 - 845069 845595 -chrXII 846735 849146 HC_gene_6423 11 - 846735 849146 -chrXII 849221 849703 HC_gene_6424 153 - 849221 849703 -chrXII 852057 853231 HC_gene_6425 59 - 852057 853231 -chrXII 853705 854330 HC_gene_6426 7 - 853705 854330 -chrXII 854376 854973 MC_gene_6427 1 - 854376 854973 -chrXII 854631 855457 MC_gene_6428 2 - 854631 855457 -chrXII 855351 855593 MC_gene_6429 1 - 855351 855593 -chrXII 861526 862295 HC_gene_6430 326 - 861526 862295 -chrXII 865303 866797 LC_gene_6431 1 - 865303 866797 -chrXII 866841 867526 MC_gene_6432 1 - 866841 867526 -chrXII 868574 871384 HC_gene_6433 20 - 868574 871384 -chrXII 872649 873589 HC_gene_6434 37 - 872649 873589 -chrXII 873606 875096 MC_gene_6435 2 - 873606 875096 -chrXII 875533 877384 HC_gene_6436 320 - 875533 877384 -chrXII 879525 879902 MC_gene_6437 1 - 879525 879902 -chrXII 879580 880177 MC_gene_6438 1 - 879580 880177 -chrXII 881903 885022 HC_gene_6439 12 - 881903 885022 -chrXII 888775 893421 HC_gene_6440 58 - 888775 893421 -chrXII 896277 898375 HC_gene_6441 140 - 896277 898375 -chrXII 899355 903386 HC_gene_6442 55 - 899355 903386 -chrXII 904575 906463 HC_gene_6443 1 - 904575 906463 -chrXII 906618 906902 MC_gene_6444 1 - 906618 906902 -chrXII 906762 907287 MC_gene_6445 1 - 906762 907287 -chrXII 909432 910007 HC_gene_6446 381 - 909432 910007 -chrXII 910180 912368 HC_gene_6447 5 - 910180 912368 -chrXII 912404 914913 HC_gene_6448 22 - 912404 914913 -chrXII 915037 919060 HC_gene_6449 17 - 915037 919060 -chrXII 919196 921643 HC_gene_6450 79 - 919196 921643 -chrXII 921522 922150 HC_gene_6451 2 - 921522 922150 -chrXII 921650 924491 HC_gene_6452 56 - 921650 924491 -chrXII 924760 925212 LC_gene_6453 1 - 924760 925212 -chrXII 928147 928586 HC_gene_6454 48 - 928147 928586 -chrXII 928815 929549 LC_gene_6455 1 - 928815 929549 -chrXII 930296 931900 HC_gene_6456 2001 - 930296 931900 -chrXII 932349 933657 LC_gene_6457 1 - 932349 933657 -chrXII 933803 934228 HC_gene_6458 67 - 933803 934228 -chrXII 934241 937282 HC_gene_6459 47 - 934241 937282 -chrXII 941054 942393 LC_gene_6460 1 - 941054 942393 -chrXII 946955 948141 MC_gene_6461 2 - 946955 948141 -chrXII 948527 949948 HC_gene_6462 22 - 948527 949948 -chrXII 950994 952743 LC_gene_6463 1 - 950994 952743 -chrXII 953209 954746 HC_gene_6464 140 - 953209 954746 -chrXII 956587 958156 HC_gene_6465 65 - 956587 958156 -chrXII 961356 963558 HC_gene_6466 8 - 961356 963558 -chrXII 964851 965565 HC_gene_6467 466 - 964851 965565 -chrXII 971692 973187 HC_gene_6468 11 - 971692 973187 -chrXII 974686 975738 LC_gene_6469 1 - 974686 975738 -chrXII 975856 976027 MC_gene_6470 1 - 975856 976027 -chrXII 976377 980334 LC_gene_6471 1 - 976377 980334 -chrXII 981972 982560 HC_gene_6472 3 - 981972 982560 -chrXII 988758 990532 LC_gene_6473 1 - 988758 990532 -chrXII 990483 990987 MC_gene_6474 1 - 990483 990987 -chrXII 1000131 1001823 HC_gene_6475 3 - 1000131 1001823 -chrXII 1001742 1002081 HC_gene_6476 11 - 1001742 1002081 -chrXII 1004163 1006123 HC_gene_6477 37 - 1004163 1006123 -chrXII 1007352 1011302 HC_gene_6478 15 - 1007352 1011302 -chrXII 1011467 1012090 HC_gene_6479 85 - 1011467 1012090 -chrXII 1012638 1013309 LC_gene_6480 1 - 1012638 1013309 -chrXII 1013749 1014238 HC_gene_6481 376 - 1013749 1014238 -chrXII 1015372 1017767 HC_gene_6482 24 - 1015372 1017767 -chrXII 1017872 1018933 HC_gene_6483 3410 - 1017872 1018933 -chrXII 1019211 1022280 HC_gene_6484 6 - 1019211 1022280 -chrXII 1022393 1023998 LC_gene_6485 1 - 1022393 1023998 -chrXII 1025068 1027932 HC_gene_6486 532 - 1025068 1027932 -chrXII 1027975 1028681 MC_gene_6487 1 - 1027975 1028681 -chrXII 1029857 1030612 MC_gene_6488 1 - 1029857 1030612 -chrXII 1031959 1032184 MC_gene_6489 1 - 1031959 1032184 -chrXII 1033554 1035701 LC_gene_6490 1 - 1033554 1035701 -chrXII 1038740 1041513 HC_gene_6491 96 - 1038740 1041513 -chrXII 1042222 1043045 HC_gene_6492 6 - 1042222 1043045 -chrXII 1042959 1043577 HC_gene_6493 1 - 1042959 1043577 -chrXII 1050727 1051961 MC_gene_6494 1 - 1050727 1051961 -chrXII 1052206 1053164 HC_gene_6495 66 - 1052206 1053164 -chrXII 1053360 1054693 LC_gene_6496 1 - 1053360 1054693 -chrXII 1055613 1057122 HC_gene_6497 10 - 1055613 1057122 -chrXII 1058497 1059309 MC_gene_6498 1 - 1058497 1059309 -chrXII 1059576 1061072 MC_gene_6499 2 - 1059576 1061072 -chrXII 1065340 1072815 LC_gene_6500 1 - 1065340 1072815 -chrXIII 8103 8462 MC_gene_6501 1 + 8103 8462 -chrXIII 10162 11485 HC_gene_6502 31 + 10162 11485 -chrXIII 13506 14031 HC_gene_6503 24 + 13506 14031 -chrXIII 15005 15305 LC_gene_6504 1 + 15005 15305 -chrXIII 17014 18951 HC_gene_6505 85 + 17014 18951 -chrXIII 21033 22053 MC_gene_6506 1 + 21033 22053 -chrXIII 24686 26530 HC_gene_6507 4 + 24686 26530 -chrXIII 26793 28143 HC_gene_6508 91 + 26793 28143 -chrXIII 29379 29928 LC_gene_6509 1 + 29379 29928 -chrXIII 30154 31746 HC_gene_6510 53 + 30154 31746 -chrXIII 34100 37818 HC_gene_6511 68 + 34100 37818 -chrXIII 38113 39961 HC_gene_6512 27 + 38113 39961 -chrXIII 43996 44925 HC_gene_6513 63 + 43996 44925 -chrXIII 45037 46041 HC_gene_6514 51 + 45037 46041 -chrXIII 46788 49837 HC_gene_6515 8 + 46788 49837 -chrXIII 51566 54692 HC_gene_6516 5 + 51566 54692 -chrXIII 54731 55750 HC_gene_6517 107 + 54731 55750 -chrXIII 56550 57876 HC_gene_6518 621 + 56550 57876 -chrXIII 58855 59440 MC_gene_6519 1 + 58855 59440 -chrXIII 68286 69755 HC_gene_6520 21 + 68286 69755 -chrXIII 70232 70556 HC_gene_6521 2 + 70232 70556 -chrXIII 71755 74036 HC_gene_6522 62 + 71755 74036 -chrXIII 77245 78337 HC_gene_6523 122 + 77245 78337 -chrXIII 79883 81808 HC_gene_6524 38 + 79883 81808 -chrXIII 82259 82945 HC_gene_6525 67 + 82259 82945 -chrXIII 83064 85947 HC_gene_6526 161 + 83064 85947 -chrXIII 92212 94329 HC_gene_6527 26 + 92212 94329 -chrXIII 94413 95802 HC_gene_6528 1 + 94413 95802 -chrXIII 97668 97876 HC_gene_6529 2 + 97668 97876 -chrXIII 99210 99655 MC_gene_6530 1 + 99210 99655 -chrXIII 99674 101277 HC_gene_6531 5 + 99674 101277 -chrXIII 101805 103954 HC_gene_6532 33 + 101805 103954 -chrXIII 103963 104460 MC_gene_6533 1 + 103963 104460 -chrXIII 104670 108617 HC_gene_6534 7 + 104670 108617 -chrXIII 108689 110182 HC_gene_6535 24 + 108689 110182 -chrXIII 110216 112473 HC_gene_6536 830 + 110216 112473 -chrXIII 115440 115731 MC_gene_6537 1 + 115440 115731 -chrXIII 116668 118881 LC_gene_6538 1 + 116668 118881 -chrXIII 119543 120134 HC_gene_6539 29 + 119543 120134 -chrXIII 121581 123210 HC_gene_6540 2 + 121581 123210 -chrXIII 127801 129717 MC_gene_6541 1 + 127801 129717 -chrXIII 128425 129846 MC_gene_6542 1 + 128425 129846 -chrXIII 129797 130399 MC_gene_6543 1 + 129797 130399 -chrXIII 132044 133061 MC_gene_6544 1 + 132044 133061 -chrXIII 133215 135300 HC_gene_6545 87 + 133215 135300 -chrXIII 135435 137231 HC_gene_6546 98 + 135435 137231 -chrXIII 137472 139449 HC_gene_6547 15 + 137472 139449 -chrXIII 140414 141639 HC_gene_6548 5 + 140414 141639 -chrXIII 142114 145111 HC_gene_6549 9 + 142114 145111 -chrXIII 146454 147312 HC_gene_6550 4029 + 146454 147312 -chrXIII 151813 153171 HC_gene_6551 26 + 151813 153171 -chrXIII 158709 159100 HC_gene_6552 17 + 158709 159100 -chrXIII 159348 159963 HC_gene_6553 776 + 159348 159963 -chrXIII 160123 162197 HC_gene_6554 31 + 160123 162197 -chrXIII 164612 165379 HC_gene_6555 205 + 164612 165379 -chrXIII 165537 168133 HC_gene_6556 3 + 165537 168133 -chrXIII 168797 169044 MC_gene_6557 1 + 168797 169044 -chrXIII 170370 171416 HC_gene_6558 157 + 170370 171416 -chrXIII 170971 171478 HC_gene_6559 29 + 170971 171478 -chrXIII 171527 173045 HC_gene_6560 48 + 171527 173045 -chrXIII 173117 174193 HC_gene_6561 21 + 173117 174193 -chrXIII 178382 179981 HC_gene_6562 344 + 178382 179981 -chrXIII 181390 183596 HC_gene_6563 22 + 181390 183596 -chrXIII 186580 190107 MC_gene_6564 1 + 186580 190107 -chrXIII 192782 194915 HC_gene_6565 12 + 192782 194915 -chrXIII 202160 202671 HC_gene_6566 1 + 202160 202671 -chrXIII 204445 205303 MC_gene_6567 1 + 204445 205303 -chrXIII 205620 206706 HC_gene_6568 54 + 205620 206706 -chrXIII 208832 209196 MC_gene_6569 1 + 208832 209196 -chrXIII 209449 212327 HC_gene_6570 14 + 209449 212327 -chrXIII 214149 216235 HC_gene_6571 6 + 214149 216235 -chrXIII 216416 217156 HC_gene_6572 172 + 216416 217156 -chrXIII 220107 220838 HC_gene_6573 3915 + 220107 220838 -chrXIII 221333 222676 HC_gene_6574 21 + 221333 222676 -chrXIII 225869 226760 HC_gene_6575 3827 + 225869 226760 -chrXIII 227033 229711 HC_gene_6576 348 + 227033 229711 -chrXIII 230991 233324 HC_gene_6577 15 + 230991 233324 -chrXIII 233432 234746 HC_gene_6578 61 + 233432 234746 -chrXIII 236516 239241 HC_gene_6579 23 + 236516 239241 -chrXIII 241993 242439 HC_gene_6580 2 + 241993 242439 -chrXIII 242470 243171 LC_gene_6581 1 + 242470 243171 -chrXIII 243213 244165 HC_gene_6582 10 + 243213 244165 -chrXIII 244136 246127 HC_gene_6583 6 + 244136 246127 -chrXIII 244143 246956 HC_gene_6584 639 + 244143 246956 -chrXIII 247637 251272 HC_gene_6585 31 + 247637 251272 -chrXIII 251751 252662 MC_gene_6586 1 + 251751 252662 -chrXIII 253133 254683 HC_gene_6587 1 + 253133 254683 -chrXIII 253720 255994 HC_gene_6588 91 + 253720 255994 -chrXIII 258332 259252 MC_gene_6589 1 + 258332 259252 -chrXIII 260212 261660 HC_gene_6590 11 + 260212 261660 -chrXIII 262813 263378 MC_gene_6591 1 + 262813 263378 -chrXIII 263480 266841 HC_gene_6592 4 + 263480 266841 -chrXIII 266932 267911 HC_gene_6593 248 + 266932 267911 -chrXIII 268421 268989 LC_gene_6594 1 + 268421 268989 -chrXIII 270967 271319 LC_gene_6595 1 + 270967 271319 -chrXIII 272141 272903 HC_gene_6596 666 + 272141 272903 -chrXIII 273089 273791 HC_gene_6597 43 + 273089 273791 -chrXIII 273955 275728 HC_gene_6598 18 + 273955 275728 -chrXIII 275972 277339 HC_gene_6599 30 + 275972 277339 -chrXIII 278832 279881 MC_gene_6600 1 + 278832 279881 -chrXIII 279946 280512 HC_gene_6601 6 + 279946 280512 -chrXIII 283065 283719 HC_gene_6602 5 + 283065 283719 -chrXIII 283257 283788 HC_gene_6603 9 + 283257 283788 -chrXIII 283640 286680 HC_gene_6604 54 + 283640 286680 -chrXIII 284870 286839 HC_gene_6605 55 + 284870 286839 -chrXIII 288039 290157 HC_gene_6606 481 + 288039 290157 -chrXIII 289936 290733 HC_gene_6607 7 + 289936 290733 -chrXIII 291004 295104 HC_gene_6608 184 + 291004 295104 -chrXIII 297106 297999 HC_gene_6609 13 + 297106 297999 -chrXIII 298084 298482 MC_gene_6610 1 + 298084 298482 -chrXIII 298840 300539 HC_gene_6611 107 + 298840 300539 -chrXIII 302762 303873 LC_gene_6612 1 + 302762 303873 -chrXIII 304063 307383 LC_gene_6613 1 + 304063 307383 -chrXIII 308065 308847 MC_gene_6614 1 + 308065 308847 -chrXIII 308597 309368 MC_gene_6615 1 + 308597 309368 -chrXIII 309743 311775 MC_gene_6616 1 + 309743 311775 -chrXIII 312263 313719 HC_gene_6617 2 + 312263 313719 -chrXIII 313715 315306 MC_gene_6618 1 + 313715 315306 -chrXIII 315340 317018 HC_gene_6619 3 + 315340 317018 -chrXIII 318649 319327 HC_gene_6620 184 + 318649 319327 -chrXIII 320112 321071 MC_gene_6621 1 + 320112 321071 -chrXIII 321896 323245 HC_gene_6622 49 + 321896 323245 -chrXIII 323291 324839 HC_gene_6623 12 + 323291 324839 -chrXIII 325807 327386 HC_gene_6624 152 + 325807 327386 -chrXIII 327460 328685 HC_gene_6625 37 + 327460 328685 -chrXIII 330615 332057 MC_gene_6626 3 + 330615 332057 -chrXIII 335196 337466 HC_gene_6627 12 + 335196 337466 -chrXIII 337743 339433 HC_gene_6628 49 + 337743 339433 -chrXIII 340112 340921 MC_gene_6629 1 + 340112 340921 -chrXIII 341099 341777 HC_gene_6630 70 + 341099 341777 -chrXIII 343736 344249 HC_gene_6631 4 + 343736 344249 -chrXIII 347208 348610 HC_gene_6632 1 + 347208 348610 -chrXIII 348787 349638 MC_gene_6633 1 + 348787 349638 -chrXIII 350222 350669 HC_gene_6634 6 + 350222 350669 -chrXIII 350671 351440 MC_gene_6635 1 + 350671 351440 -chrXIII 352506 353594 HC_gene_6636 54 + 352506 353594 -chrXIII 353470 355062 HC_gene_6637 114 + 353470 355062 -chrXIII 355367 356996 HC_gene_6638 99 + 355367 356996 -chrXIII 362158 362928 MC_gene_6639 1 + 362158 362928 -chrXIII 362171 363371 MC_gene_6640 1 + 362171 363371 -chrXIII 366956 368108 HC_gene_6641 55 + 366956 368108 -chrXIII 371117 371798 MC_gene_6642 1 + 371117 371798 -chrXIII 371862 372154 HC_gene_6643 4 + 371862 372154 -chrXIII 377641 379120 MC_gene_6644 3 + 377641 379120 -chrXIII 379564 380876 HC_gene_6645 28 + 379564 380876 -chrXIII 383097 386584 HC_gene_6646 57 + 383097 386584 -chrXIII 388659 390906 HC_gene_6647 282 + 388659 390906 -chrXIII 391075 391860 HC_gene_6648 72 + 391075 391860 -chrXIII 392729 394895 HC_gene_6649 42 + 392729 394895 -chrXIII 397012 399678 HC_gene_6650 24 + 397012 399678 -chrXIII 399877 401352 HC_gene_6651 16 + 399877 401352 -chrXIII 401555 404260 HC_gene_6652 9 + 401555 404260 -chrXIII 405735 407678 HC_gene_6653 6 + 405735 407678 -chrXIII 407781 410781 HC_gene_6654 57 + 407781 410781 -chrXIII 411545 412397 HC_gene_6655 822 + 411545 412397 -chrXIII 412409 412988 LC_gene_6656 1 + 412409 412988 -chrXIII 413110 413811 HC_gene_6657 24 + 413110 413811 -chrXIII 413814 416150 HC_gene_6658 21 + 413814 416150 -chrXIII 421049 421445 MC_gene_6659 1 + 421049 421445 -chrXIII 422383 423439 MC_gene_6660 1 + 422383 423439 -chrXIII 424952 426394 HC_gene_6661 190 + 424952 426394 -chrXIII 429946 431455 HC_gene_6662 5 + 429946 431455 -chrXIII 432084 432495 MC_gene_6663 1 + 432084 432495 -chrXIII 432149 432518 MC_gene_6664 1 + 432149 432518 -chrXIII 432338 433189 MC_gene_6665 1 + 432338 433189 -chrXIII 434111 434754 HC_gene_6666 4 + 434111 434754 -chrXIII 434755 436164 HC_gene_6667 848 + 434755 436164 -chrXIII 436315 438884 HC_gene_6668 1 + 436315 438884 -chrXIII 441025 442312 HC_gene_6669 9 + 441025 442312 -chrXIII 442511 442852 HC_gene_6670 1 + 442511 442852 -chrXIII 443378 445489 MC_gene_6671 1 + 443378 445489 -chrXIII 448458 450062 HC_gene_6672 24 + 448458 450062 -chrXIII 453963 455665 HC_gene_6673 45 + 453963 455665 -chrXIII 455796 459445 HC_gene_6674 337 + 455796 459445 -chrXIII 460736 462023 MC_gene_6675 1 + 460736 462023 -chrXIII 462798 463285 HC_gene_6676 5 + 462798 463285 -chrXIII 463572 463845 LC_gene_6677 1 + 463572 463845 -chrXIII 465031 465438 HC_gene_6678 33 + 465031 465438 -chrXIII 465944 466776 HC_gene_6679 2 + 465944 466776 -chrXIII 466461 467106 HC_gene_6680 1 + 466461 467106 -chrXIII 467944 468401 HC_gene_6681 12 + 467944 468401 -chrXIII 473328 473659 MC_gene_6682 1 + 473328 473659 -chrXIII 475442 475832 MC_gene_6683 1 + 475442 475832 -chrXIII 475862 477121 MC_gene_6684 1 + 475862 477121 -chrXIII 478033 479060 LC_gene_6685 1 + 478033 479060 -chrXIII 480190 480580 MC_gene_6686 1 + 480190 480580 -chrXIII 480861 481458 HC_gene_6687 151 + 480861 481458 -chrXIII 482992 483439 HC_gene_6688 1 + 482992 483439 -chrXIII 483899 486413 HC_gene_6689 492 + 483899 486413 -chrXIII 486544 490329 HC_gene_6690 62 + 486544 490329 -chrXIII 491031 492371 MC_gene_6691 1 + 491031 492371 -chrXIII 493660 493984 MC_gene_6692 1 + 493660 493984 -chrXIII 493675 494092 MC_gene_6693 1 + 493675 494092 -chrXIII 494578 494867 HC_gene_6694 1 + 494578 494867 -chrXIII 494940 496353 HC_gene_6695 36 + 494940 496353 -chrXIII 497677 499326 HC_gene_6696 9 + 497677 499326 -chrXIII 500971 501679 MC_gene_6697 1 + 500971 501679 -chrXIII 501152 501839 MC_gene_6698 1 + 501152 501839 -chrXIII 502120 503613 HC_gene_6699 12 + 502120 503613 -chrXIII 503711 504205 MC_gene_6700 1 + 503711 504205 -chrXIII 503862 504642 MC_gene_6701 1 + 503862 504642 -chrXIII 505111 507415 HC_gene_6702 41 + 505111 507415 -chrXIII 507542 509743 MC_gene_6703 1 + 507542 509743 -chrXIII 511269 511816 HC_gene_6704 1765 + 511269 511816 -chrXIII 511986 512202 HC_gene_6705 2 + 511986 512202 -chrXIII 512806 513355 HC_gene_6706 38 + 512806 513355 -chrXIII 513563 514049 HC_gene_6707 299 + 513563 514049 -chrXIII 514184 517369 HC_gene_6708 9 + 514184 517369 -chrXIII 517463 520643 HC_gene_6709 41 + 517463 520643 -chrXIII 522180 522833 HC_gene_6710 3 + 522180 522833 -chrXIII 523648 527582 HC_gene_6711 16 + 523648 527582 -chrXIII 527762 531969 HC_gene_6712 11 + 527762 531969 -chrXIII 531286 533165 HC_gene_6713 151 + 531286 533165 -chrXIII 534944 535866 HC_gene_6714 3 + 534944 535866 -chrXIII 537807 538708 HC_gene_6715 50 + 537807 538708 -chrXIII 540994 542953 HC_gene_6716 34 + 540994 542953 -chrXIII 545154 547473 HC_gene_6717 69 + 545154 547473 -chrXIII 547660 550024 HC_gene_6718 15 + 547660 550024 -chrXIII 551905 553254 HC_gene_6719 2098 + 551905 553254 -chrXIII 553228 554560 HC_gene_6720 20 + 553228 554560 -chrXIII 556340 557328 LC_gene_6721 1 + 556340 557328 -chrXIII 557493 558027 MC_gene_6722 1 + 557493 558027 -chrXIII 559173 561968 HC_gene_6723 214 + 559173 561968 -chrXIII 562679 562885 HC_gene_6724 1 + 562679 562885 -chrXIII 563051 564266 HC_gene_6725 77 + 563051 564266 -chrXIII 564390 567380 HC_gene_6726 28 + 564390 567380 -chrXIII 568330 570337 HC_gene_6727 13 + 568330 570337 -chrXIII 571151 571570 MC_gene_6728 1 + 571151 571570 -chrXIII 572239 572802 HC_gene_6729 130 + 572239 572802 -chrXIII 574187 574928 LC_gene_6730 1 + 574187 574928 -chrXIII 575017 577559 HC_gene_6731 4 + 575017 577559 -chrXIII 577667 578982 HC_gene_6732 111 + 577667 578982 -chrXIII 584022 584312 MC_gene_6733 1 + 584022 584312 -chrXIII 585303 585732 LC_gene_6734 1 + 585303 585732 -chrXIII 588579 589407 MC_gene_6735 1 + 588579 589407 -chrXIII 590366 591668 MC_gene_6736 2 + 590366 591668 -chrXIII 592926 593339 MC_gene_6737 1 + 592926 593339 -chrXIII 594865 597900 HC_gene_6738 3 + 594865 597900 -chrXIII 600505 600985 MC_gene_6739 1 + 600505 600985 -chrXIII 601414 602162 MC_gene_6740 1 + 601414 602162 -chrXIII 603217 603800 HC_gene_6741 3 + 603217 603800 -chrXIII 606104 608246 HC_gene_6742 14 + 606104 608246 -chrXIII 608518 610093 HC_gene_6743 274 + 608518 610093 -chrXIII 610421 611023 HC_gene_6744 18 + 610421 611023 -chrXIII 611078 611373 MC_gene_6745 1 + 611078 611373 -chrXIII 611630 616059 HC_gene_6746 5 + 611630 616059 -chrXIII 616408 618307 HC_gene_6747 28 + 616408 618307 -chrXIII 618444 619566 HC_gene_6748 113 + 618444 619566 -chrXIII 619672 622244 HC_gene_6749 8 + 619672 622244 -chrXIII 623421 626839 HC_gene_6750 100 + 623421 626839 -chrXIII 627166 627472 LC_gene_6751 1 + 627166 627472 -chrXIII 628131 628898 HC_gene_6752 117 + 628131 628898 -chrXIII 629018 632030 HC_gene_6753 7 + 629018 632030 -chrXIII 632326 634554 HC_gene_6754 2211 + 632326 634554 -chrXIII 634733 636146 LC_gene_6755 1 + 634733 636146 -chrXIII 637392 640686 HC_gene_6756 24 + 637392 640686 -chrXIII 645641 646937 HC_gene_6757 57 + 645641 646937 -chrXIII 647023 649361 HC_gene_6758 11 + 647023 649361 -chrXIII 650024 650936 HC_gene_6759 44 + 650024 650936 -chrXIII 651126 652011 HC_gene_6760 1301 + 651126 652011 -chrXIII 652273 652832 HC_gene_6761 51 + 652273 652832 -chrXIII 653087 653904 LC_gene_6762 1 + 653087 653904 -chrXIII 653940 654956 HC_gene_6763 255 + 653940 654956 -chrXIII 655008 658447 HC_gene_6764 17 + 655008 658447 -chrXIII 659471 661760 HC_gene_6765 7 + 659471 661760 -chrXIII 662119 664381 HC_gene_6766 33 + 662119 664381 -chrXIII 664658 665870 HC_gene_6767 208 + 664658 665870 -chrXIII 667510 668269 HC_gene_6768 624 + 667510 668269 -chrXIII 668425 669986 HC_gene_6769 248 + 668425 669986 -chrXIII 675007 675676 HC_gene_6770 6 + 675007 675676 -chrXIII 675740 677077 HC_gene_6771 17 + 675740 677077 -chrXIII 684191 685909 HC_gene_6772 58 + 684191 685909 -chrXIII 686430 687459 LC_gene_6773 1 + 686430 687459 -chrXIII 687491 688941 HC_gene_6774 20 + 687491 688941 -chrXIII 689063 690927 HC_gene_6775 14 + 689063 690927 -chrXIII 693327 695191 HC_gene_6776 7 + 693327 695191 -chrXIII 695329 696741 HC_gene_6777 84 + 695329 696741 -chrXIII 696770 698592 HC_gene_6778 118 + 696770 698592 -chrXIII 701729 703452 HC_gene_6779 691 + 701729 703452 -chrXIII 707088 712165 HC_gene_6780 31 + 707088 712165 -chrXIII 712296 713922 HC_gene_6781 67 + 712296 713922 -chrXIII 716490 718574 HC_gene_6782 19 + 716490 718574 -chrXIII 720463 720861 LC_gene_6783 1 + 720463 720861 -chrXIII 721414 721810 MC_gene_6784 1 + 721414 721810 -chrXIII 724617 725761 HC_gene_6785 24 + 724617 725761 -chrXIII 731440 732160 HC_gene_6786 11 + 731440 732160 -chrXIII 732380 733439 HC_gene_6787 2066 + 732380 733439 -chrXIII 733515 736824 HC_gene_6788 13 + 733515 736824 -chrXIII 739167 740047 HC_gene_6789 32 + 739167 740047 -chrXIII 740172 741419 HC_gene_6790 30 + 740172 741419 -chrXIII 742959 743658 HC_gene_6791 202 + 742959 743658 -chrXIII 743676 746068 HC_gene_6792 23 + 743676 746068 -chrXIII 746243 747814 HC_gene_6793 118 + 746243 747814 -chrXIII 749924 750413 LC_gene_6794 1 + 749924 750413 -chrXIII 751814 752958 HC_gene_6795 408 + 751814 752958 -chrXIII 754394 754821 MC_gene_6796 1 + 754394 754821 -chrXIII 758434 758958 HC_gene_6797 3 + 758434 758958 -chrXIII 759578 762064 HC_gene_6798 287 + 759578 762064 -chrXIII 763339 764265 HC_gene_6799 14 + 763339 764265 -chrXIII 770756 772871 HC_gene_6800 29 + 770756 772871 -chrXIII 774126 775216 HC_gene_6801 2915 + 774126 775216 -chrXIII 775235 775901 MC_gene_6802 1 + 775235 775901 -chrXIII 775975 776856 HC_gene_6803 6 + 775975 776856 -chrXIII 777336 778844 HC_gene_6804 130 + 777336 778844 -chrXIII 779007 779192 MC_gene_6805 1 + 779007 779192 -chrXIII 784515 785061 HC_gene_6806 7 + 784515 785061 -chrXIII 789007 789297 MC_gene_6807 1 + 789007 789297 -chrXIII 789056 789449 MC_gene_6808 1 + 789056 789449 -chrXIII 789420 790124 MC_gene_6809 1 + 789420 790124 -chrXIII 793681 794915 HC_gene_6810 39 + 793681 794915 -chrXIII 794891 795691 HC_gene_6811 133 + 794891 795691 -chrXIII 795754 796702 HC_gene_6812 201 + 795754 796702 -chrXIII 797741 798456 MC_gene_6813 1 + 797741 798456 -chrXIII 798505 801587 HC_gene_6814 64 + 798505 801587 -chrXIII 801658 802861 HC_gene_6815 62 + 801658 802861 -chrXIII 804424 805221 HC_gene_6816 144 + 804424 805221 -chrXIII 807706 808131 MC_gene_6817 1 + 807706 808131 -chrXIII 809120 809604 HC_gene_6818 12 + 809120 809604 -chrXIII 811158 812915 MC_gene_6819 1 + 811158 812915 -chrXIII 815258 815643 MC_gene_6820 1 + 815258 815643 -chrXIII 818806 820055 HC_gene_6821 304 + 818806 820055 -chrXIII 820135 822576 HC_gene_6822 22 + 820135 822576 -chrXIII 822721 827003 HC_gene_6823 15 + 822721 827003 -chrXIII 830073 830918 MC_gene_6824 1 + 830073 830918 -chrXIII 832278 833513 HC_gene_6825 56 + 832278 833513 -chrXIII 833519 835215 LC_gene_6826 1 + 833519 835215 -chrXIII 836977 837816 MC_gene_6827 1 + 836977 837816 -chrXIII 837162 837823 MC_gene_6828 1 + 837162 837823 -chrXIII 838141 840096 HC_gene_6829 21 + 838141 840096 -chrXIII 841923 842355 HC_gene_6830 192 + 841923 842355 -chrXIII 845557 848545 HC_gene_6831 8 + 845557 848545 -chrXIII 848660 850313 HC_gene_6832 58 + 848660 850313 -chrXIII 851914 852520 LC_gene_6833 1 + 851914 852520 -chrXIII 852550 854593 HC_gene_6834 104 + 852550 854593 -chrXIII 854763 855397 HC_gene_6835 307 + 854763 855397 -chrXIII 856963 858292 HC_gene_6836 17 + 856963 858292 -chrXIII 859240 861291 MC_gene_6837 1 + 859240 861291 -chrXIII 861442 861812 MC_gene_6838 1 + 861442 861812 -chrXIII 861848 863628 HC_gene_6839 554 + 861848 863628 -chrXIII 863795 864406 HC_gene_6840 286 + 863795 864406 -chrXIII 864655 864928 LC_gene_6841 1 + 864655 864928 -chrXIII 867609 868002 LC_gene_6842 1 + 867609 868002 -chrXIII 869844 870113 MC_gene_6843 1 + 869844 870113 -chrXIII 872991 874448 HC_gene_6844 90 + 872991 874448 -chrXIII 874775 878866 HC_gene_6845 23 + 874775 878866 -chrXIII 880817 882329 MC_gene_6846 2 + 880817 882329 -chrXIII 886915 888826 HC_gene_6847 3344 + 886915 888826 -chrXIII 892515 892777 MC_gene_6848 1 + 892515 892777 -chrXIII 898366 899343 HC_gene_6849 68 + 898366 899343 -chrXIII 901665 902727 HC_gene_6850 471 + 901665 902727 -chrXIII 902756 903948 HC_gene_6851 235 + 902756 903948 -chrXIII 904168 906022 HC_gene_6852 56 + 904168 906022 -chrXIII 906277 906869 LC_gene_6853 1 + 906277 906869 -chrXIII 910571 910968 HC_gene_6854 3 + 910571 910968 -chrXIII 912444 914797 HC_gene_6855 16 + 912444 914797 -chrXIII 915459 915999 HC_gene_6856 5 + 915459 915999 -chrXIII 916111 917142 MC_gene_6857 1 + 916111 917142 -chrXIII 8777 9853 MC_gene_6858 2 - 8777 9853 -chrXIII 11393 13276 HC_gene_6859 86 - 11393 13276 -chrXIII 14203 14764 HC_gene_6860 306 - 14203 14764 -chrXIII 14929 16725 HC_gene_6861 42 - 14929 16725 -chrXIII 18843 20482 HC_gene_6862 220 - 18843 20482 -chrXIII 20678 21723 HC_gene_6863 316 - 20678 21723 -chrXIII 21921 23877 HC_gene_6864 107 - 21921 23877 -chrXIII 25868 26819 MC_gene_6865 1 - 25868 26819 -chrXIII 27909 29868 HC_gene_6866 118 - 27909 29868 -chrXIII 29750 31696 MC_gene_6867 1 - 29750 31696 -chrXIII 31699 32015 MC_gene_6868 1 - 31699 32015 -chrXIII 32845 33811 MC_gene_6869 1 - 32845 33811 -chrXIII 36954 37711 LC_gene_6870 1 - 36954 37711 -chrXIII 40000 41866 HC_gene_6871 103 - 40000 41866 -chrXIII 41970 43761 HC_gene_6872 29 - 41970 43761 -chrXIII 45978 46500 HC_gene_6873 20 - 45978 46500 -chrXIII 49588 51005 HC_gene_6874 231 - 49588 51005 -chrXIII 55011 56283 HC_gene_6875 36 - 55011 56283 -chrXIII 57745 58719 HC_gene_6876 157 - 57745 58719 -chrXIII 58874 62262 HC_gene_6877 4 - 58874 62262 -chrXIII 62372 63453 HC_gene_6878 6 - 62372 63453 -chrXIII 64610 67587 HC_gene_6879 2 - 64610 67587 -chrXIII 67991 69688 HC_gene_6880 1 - 67991 69688 -chrXIII 69660 70129 HC_gene_6881 134 - 69660 70129 -chrXIII 74250 77006 HC_gene_6882 10 - 74250 77006 -chrXIII 77779 78166 MC_gene_6883 1 - 77779 78166 -chrXIII 78237 79704 HC_gene_6884 58 - 78237 79704 -chrXIII 80902 82140 HC_gene_6885 1 - 80902 82140 -chrXIII 82503 82839 LC_gene_6886 1 - 82503 82839 -chrXIII 85885 86761 HC_gene_6887 367 - 85885 86761 -chrXIII 86987 91045 MC_gene_6888 3 - 86987 91045 -chrXIII 92696 94016 LC_gene_6889 1 - 92696 94016 -chrXIII 94331 95475 HC_gene_6890 10 - 94331 95475 -chrXIII 95671 97522 HC_gene_6891 85 - 95671 97522 -chrXIII 97765 99433 HC_gene_6892 179 - 97765 99433 -chrXIII 99583 100678 MC_gene_6893 1 - 99583 100678 -chrXIII 103820 104207 HC_gene_6894 670 - 103820 104207 -chrXIII 110416 110851 MC_gene_6895 1 - 110416 110851 -chrXIII 112282 115364 HC_gene_6896 4 - 112282 115364 -chrXIII 115586 119118 HC_gene_6897 25 - 115586 119118 -chrXIII 119989 121351 HC_gene_6898 557 - 119989 121351 -chrXIII 121325 123014 HC_gene_6899 3 - 121325 123014 -chrXIII 123148 124190 HC_gene_6900 3810 - 123148 124190 -chrXIII 124582 129538 HC_gene_6901 129 - 124582 129538 -chrXIII 129460 131649 HC_gene_6902 45 - 129460 131649 -chrXIII 131663 133259 MC_gene_6903 1 - 131663 133259 -chrXIII 138313 140226 HC_gene_6904 39 - 138313 140226 -chrXIII 140315 140930 MC_gene_6905 1 - 140315 140930 -chrXIII 141527 141954 HC_gene_6906 4 - 141527 141954 -chrXIII 144829 145938 HC_gene_6907 31 - 144829 145938 -chrXIII 147433 148716 HC_gene_6908 100 - 147433 148716 -chrXIII 148862 151667 HC_gene_6909 30 - 148862 151667 -chrXIII 153087 158313 HC_gene_6910 2 - 153087 158313 -chrXIII 158673 159789 MC_gene_6911 1 - 158673 159789 -chrXIII 162079 164270 HC_gene_6912 617 - 162079 164270 -chrXIII 165355 166906 MC_gene_6913 1 - 165355 166906 -chrXIII 168991 169836 HC_gene_6914 124 - 168991 169836 -chrXIII 171360 171854 MC_gene_6915 1 - 171360 171854 -chrXIII 171469 172779 MC_gene_6916 1 - 171469 172779 -chrXIII 172989 173300 MC_gene_6917 1 - 172989 173300 -chrXIII 174098 174602 HC_gene_6918 9 - 174098 174602 -chrXIII 176049 178178 HC_gene_6919 1 - 176049 178178 -chrXIII 179654 181087 LC_gene_6920 1 - 179654 181087 -chrXIII 183745 183923 LC_gene_6921 1 - 183745 183923 -chrXIII 184140 185144 MC_gene_6922 1 - 184140 185144 -chrXIII 190080 191930 HC_gene_6923 33 - 190080 191930 -chrXIII 193473 194689 MC_gene_6924 1 - 193473 194689 -chrXIII 194871 195953 HC_gene_6925 37 - 194871 195953 -chrXIII 202596 205468 HC_gene_6926 45 - 202596 205468 -chrXIII 206153 209035 HC_gene_6927 25 - 206153 209035 -chrXIII 212187 213961 HC_gene_6928 17 - 212187 213961 -chrXIII 217423 219853 MC_gene_6929 1 - 217423 219853 -chrXIII 219937 220725 MC_gene_6930 1 - 219937 220725 -chrXIII 220760 222626 MC_gene_6931 1 - 220760 222626 -chrXIII 221222 222631 MC_gene_6932 1 - 221222 222631 -chrXIII 222640 223848 HC_gene_6933 2723 - 222640 223848 -chrXIII 224297 225408 HC_gene_6934 36 - 224297 225408 -chrXIII 226932 228709 HC_gene_6935 27 - 226932 228709 -chrXIII 229574 230794 HC_gene_6936 46 - 229574 230794 -chrXIII 231047 233226 LC_gene_6937 1 - 231047 233226 -chrXIII 233209 233635 HC_gene_6938 1 - 233209 233635 -chrXIII 234641 236084 HC_gene_6939 79 - 234641 236084 -chrXIII 236911 238911 MC_gene_6940 1 - 236911 238911 -chrXIII 239133 241800 HC_gene_6941 61 - 239133 241800 -chrXIII 241836 243060 HC_gene_6942 51 - 241836 243060 -chrXIII 244905 245492 LC_gene_6943 1 - 244905 245492 -chrXIII 246775 247414 HC_gene_6944 64 - 246775 247414 -chrXIII 251012 251559 HC_gene_6945 205 - 251012 251559 -chrXIII 251711 253238 HC_gene_6946 659 - 251711 253238 -chrXIII 256016 258566 HC_gene_6947 9 - 256016 258566 -chrXIII 258692 258959 HC_gene_6948 25 - 258692 258959 -chrXIII 259358 260080 HC_gene_6949 2 - 259358 260080 -chrXIII 261565 262870 HC_gene_6950 274 - 261565 262870 -chrXIII 262743 264247 LC_gene_6951 1 - 262743 264247 -chrXIII 265472 266786 HC_gene_6952 10 - 265472 266786 -chrXIII 266749 267481 HC_gene_6953 5 - 266749 267481 -chrXIII 268915 271521 HC_gene_6954 28 - 268915 271521 -chrXIII 271579 271906 HC_gene_6955 10 - 271579 271906 -chrXIII 271939 272581 LC_gene_6956 1 - 271939 272581 -chrXIII 273210 273771 MC_gene_6957 1 - 273210 273771 -chrXIII 275620 276104 MC_gene_6958 1 - 275620 276104 -chrXIII 277455 279740 HC_gene_6959 20 - 277455 279740 -chrXIII 280254 282633 HC_gene_6960 62 - 280254 282633 -chrXIII 282671 283608 HC_gene_6961 4 - 282671 283608 -chrXIII 284273 284618 MC_gene_6962 1 - 284273 284618 -chrXIII 284639 285429 LC_gene_6963 1 - 284639 285429 -chrXIII 286631 287111 MC_gene_6964 1 - 286631 287111 -chrXIII 288004 289777 LC_gene_6965 1 - 288004 289777 -chrXIII 294972 296787 HC_gene_6966 12 - 294972 296787 -chrXIII 297883 298579 LC_gene_6967 1 - 297883 298579 -chrXIII 300697 302592 HC_gene_6968 90 - 300697 302592 -chrXIII 303113 303974 HC_gene_6969 31 - 303113 303974 -chrXIII 305731 306019 HC_gene_6970 4 - 305731 306019 -chrXIII 308025 308797 LC_gene_6971 1 - 308025 308797 -chrXIII 309298 310079 LC_gene_6972 1 - 309298 310079 -chrXIII 311464 312034 HC_gene_6973 44 - 311464 312034 -chrXIII 313653 314973 MC_gene_6974 1 - 313653 314973 -chrXIII 316309 316813 LC_gene_6975 1 - 316309 316813 -chrXIII 316891 318476 HC_gene_6976 34 - 316891 318476 -chrXIII 319381 321040 HC_gene_6977 6 - 319381 321040 -chrXIII 321285 321768 LC_gene_6978 1 - 321285 321768 -chrXIII 323070 323709 MC_gene_6979 1 - 323070 323709 -chrXIII 324157 325617 HC_gene_6980 28 - 324157 325617 -chrXIII 328236 330270 HC_gene_6981 30 - 328236 330270 -chrXIII 331202 331900 MC_gene_6982 1 - 331202 331900 -chrXIII 332039 334815 HC_gene_6983 116 - 332039 334815 -chrXIII 335295 337515 LC_gene_6984 1 - 335295 337515 -chrXIII 339309 340910 HC_gene_6985 3 - 339309 340910 -chrXIII 341696 343563 HC_gene_6986 11 - 341696 343563 -chrXIII 344107 346993 HC_gene_6987 32 - 344107 346993 -chrXIII 347382 349681 HC_gene_6988 588 - 347382 349681 -chrXIII 350842 352201 HC_gene_6989 19 - 350842 352201 -chrXIII 352477 353127 HC_gene_6990 10 - 352477 353127 -chrXIII 354714 355140 MC_gene_6991 1 - 354714 355140 -chrXIII 356851 358394 HC_gene_6992 1 - 356851 358394 -chrXIII 363282 366781 HC_gene_6993 65 - 363282 366781 -chrXIII 368014 370552 HC_gene_6994 49 - 368014 370552 -chrXIII 372056 372325 MC_gene_6995 1 - 372056 372325 -chrXIII 377602 379158 MC_gene_6996 3 - 377602 379158 -chrXIII 380224 382899 HC_gene_6997 1 - 380224 382899 -chrXIII 385995 387051 HC_gene_6998 11 - 385995 387051 -chrXIII 387189 388326 HC_gene_6999 26 - 387189 388326 -chrXIII 388654 390971 HC_gene_7000 2 - 388654 390971 -chrXIII 391489 392537 HC_gene_7001 50 - 391489 392537 -chrXIII 394873 396396 HC_gene_7002 232 - 394873 396396 -chrXIII 396772 397730 LC_gene_7003 1 - 396772 397730 -chrXIII 398516 399247 MC_gene_7004 1 - 398516 399247 -chrXIII 399446 400080 MC_gene_7005 1 - 399446 400080 -chrXIII 401161 401556 LC_gene_7006 1 - 401161 401556 -chrXIII 404234 406141 HC_gene_7007 52 - 404234 406141 -chrXIII 407562 408598 MC_gene_7008 1 - 407562 408598 -chrXIII 408492 408819 MC_gene_7009 1 - 408492 408819 -chrXIII 409340 410314 MC_gene_7010 1 - 409340 410314 -chrXIII 410691 411324 HC_gene_7011 378 - 410691 411324 -chrXIII 411801 412900 HC_gene_7012 81 - 411801 412900 -chrXIII 412963 413484 HC_gene_7013 409 - 412963 413484 -chrXIII 416067 420109 HC_gene_7014 17 - 416067 420109 -chrXIII 420414 420655 MC_gene_7015 1 - 420414 420655 -chrXIII 421187 422236 HC_gene_7016 55 - 421187 422236 -chrXIII 422361 424736 HC_gene_7017 19 - 422361 424736 -chrXIII 426243 429707 HC_gene_7018 9 - 426243 429707 -chrXIII 429889 430367 MC_gene_7019 1 - 429889 430367 -chrXIII 429894 431234 MC_gene_7020 2 - 429894 431234 -chrXIII 433087 433541 HC_gene_7021 4 - 433087 433541 -chrXIII 433565 434020 MC_gene_7022 1 - 433565 434020 -chrXIII 435938 436515 LC_gene_7023 1 - 435938 436515 -chrXIII 442047 443165 HC_gene_7024 4 - 442047 443165 -chrXIII 443201 445197 HC_gene_7025 51 - 443201 445197 -chrXIII 445398 448286 HC_gene_7026 79 - 445398 448286 -chrXIII 449880 451423 HC_gene_7027 119 - 449880 451423 -chrXIII 451514 453750 HC_gene_7028 58 - 451514 453750 -chrXIII 456968 457582 HC_gene_7029 3 - 456968 457582 -chrXIII 459357 460558 HC_gene_7030 26 - 459357 460558 -chrXIII 460727 462687 HC_gene_7031 17 - 460727 462687 -chrXIII 462808 463420 MC_gene_7032 1 - 462808 463420 -chrXIII 463133 463658 MC_gene_7033 1 - 463133 463658 -chrXIII 463669 464851 HC_gene_7034 236 - 463669 464851 -chrXIII 465137 465658 HC_gene_7035 3 - 465137 465658 -chrXIII 465786 466220 LC_gene_7036 1 - 465786 466220 -chrXIII 468246 469030 MC_gene_7037 1 - 468246 469030 -chrXIII 469691 472696 HC_gene_7038 130 - 469691 472696 -chrXIII 472729 475523 HC_gene_7039 19 - 472729 475523 -chrXIII 475745 480496 HC_gene_7040 96 - 475745 480496 -chrXIII 480536 480688 MC_gene_7041 1 - 480536 480688 -chrXIII 481220 482075 MC_gene_7042 2 - 481220 482075 -chrXIII 482185 482409 MC_gene_7043 1 - 482185 482409 -chrXIII 482195 482700 MC_gene_7044 1 - 482195 482700 -chrXIII 482262 482931 MC_gene_7045 1 - 482262 482931 -chrXIII 483367 483730 HC_gene_7046 1 - 483367 483730 -chrXIII 486181 486503 MC_gene_7047 1 - 486181 486503 -chrXIII 490319 492016 HC_gene_7048 77 - 490319 492016 -chrXIII 492228 493875 HC_gene_7049 20 - 492228 493875 -chrXIII 493916 494616 HC_gene_7050 78 - 493916 494616 -chrXIII 494783 496163 MC_gene_7051 1 - 494783 496163 -chrXIII 496270 497480 HC_gene_7052 25 - 496270 497480 -chrXIII 499245 501920 HC_gene_7053 3644 - 499245 501920 -chrXIII 502036 503640 MC_gene_7054 1 - 502036 503640 -chrXIII 504518 504883 MC_gene_7055 1 - 504518 504883 -chrXIII 505113 506413 LC_gene_7056 1 - 505113 506413 -chrXIII 507394 509329 HC_gene_7057 423 - 507394 509329 -chrXIII 509679 510376 HC_gene_7058 126 - 509679 510376 -chrXIII 512261 513350 MC_gene_7059 1 - 512261 513350 -chrXIII 513277 513819 MC_gene_7060 1 - 513277 513819 -chrXIII 517216 517518 MC_gene_7061 1 - 517216 517518 -chrXIII 520669 523447 HC_gene_7062 35 - 520669 523447 -chrXIII 526875 527464 LC_gene_7063 1 - 526875 527464 -chrXIII 531783 532246 HC_gene_7064 2 - 531783 532246 -chrXIII 533004 535645 HC_gene_7065 324 - 533004 535645 -chrXIII 535946 537038 MC_gene_7066 1 - 535946 537038 -chrXIII 538562 540625 HC_gene_7067 27 - 538562 540625 -chrXIII 542848 544992 HC_gene_7068 9 - 542848 544992 -chrXIII 545200 545573 LC_gene_7069 1 - 545200 545573 -chrXIII 549937 551222 HC_gene_7070 3409 - 549937 551222 -chrXIII 554463 556673 HC_gene_7071 237 - 554463 556673 -chrXIII 556568 556927 HC_gene_7072 6 - 556568 556927 -chrXIII 557380 558563 HC_gene_7073 781 - 557380 558563 -chrXIII 559707 560668 HC_gene_7074 8 - 559707 560668 -chrXIII 561808 562916 HC_gene_7075 99 - 561808 562916 -chrXIII 563658 564198 MC_gene_7076 1 - 563658 564198 -chrXIII 565794 568210 HC_gene_7077 3 - 565794 568210 -chrXIII 570184 571140 HC_gene_7078 18 - 570184 571140 -chrXIII 571146 572056 HC_gene_7079 38 - 571146 572056 -chrXIII 573109 574878 HC_gene_7080 9 - 573109 574878 -chrXIII 575760 577456 MC_gene_7081 1 - 575760 577456 -chrXIII 578609 584088 HC_gene_7082 3 - 578609 584088 -chrXIII 584146 586533 MC_gene_7083 1 - 584146 586533 -chrXIII 586896 589687 HC_gene_7084 13 - 586896 589687 -chrXIII 589950 592743 HC_gene_7085 15 - 589950 592743 -chrXIII 593141 594694 HC_gene_7086 13 - 593141 594694 -chrXIII 596458 599265 HC_gene_7087 9 - 596458 599265 -chrXIII 599293 601197 HC_gene_7088 12 - 599293 601197 -chrXIII 601498 603307 HC_gene_7089 17 - 601498 603307 -chrXIII 603614 605717 HC_gene_7090 32 - 603614 605717 -chrXIII 605861 606530 HC_gene_7091 2 - 605861 606530 -chrXIII 608591 609819 MC_gene_7092 1 - 608591 609819 -chrXIII 609994 610970 HC_gene_7093 66 - 609994 610970 -chrXIII 611343 611928 LC_gene_7094 1 - 611343 611928 -chrXIII 615971 616273 HC_gene_7095 18 - 615971 616273 -chrXIII 618396 619475 HC_gene_7096 13 - 618396 619475 -chrXIII 620768 625281 HC_gene_7097 116 - 620768 625281 -chrXIII 625446 626381 MC_gene_7098 1 - 625446 626381 -chrXIII 626639 627875 HC_gene_7099 203 - 626639 627875 -chrXIII 628460 628747 MC_gene_7100 1 - 628460 628747 -chrXIII 634449 636007 HC_gene_7101 5 - 634449 636007 -chrXIII 636177 637079 HC_gene_7102 84 - 636177 637079 -chrXIII 640735 645411 HC_gene_7103 4 - 640735 645411 -chrXIII 645307 646615 LC_gene_7104 1 - 645307 646615 -chrXIII 649498 650838 LC_gene_7105 1 - 649498 650838 -chrXIII 651383 651952 LC_gene_7106 1 - 651383 651952 -chrXIII 652116 653258 HC_gene_7107 112 - 652116 653258 -chrXIII 653969 654660 MC_gene_7108 1 - 653969 654660 -chrXIII 654270 654731 MC_gene_7109 1 - 654270 654731 -chrXIII 654881 656099 HC_gene_7110 4 - 654881 656099 -chrXIII 656207 657206 LC_gene_7111 1 - 656207 657206 -chrXIII 658195 659232 HC_gene_7112 109 - 658195 659232 -chrXIII 660225 661547 LC_gene_7113 1 - 660225 661547 -chrXIII 661525 661925 MC_gene_7114 1 - 661525 661925 -chrXIII 663205 664322 LC_gene_7115 1 - 663205 664322 -chrXIII 665657 667702 HC_gene_7116 26 - 665657 667702 -chrXIII 667778 668238 MC_gene_7117 1 - 667778 668238 -chrXIII 669757 671376 HC_gene_7118 3 - 669757 671376 -chrXIII 671551 674925 HC_gene_7119 785 - 671551 674925 -chrXIII 675563 676654 MC_gene_7120 1 - 675563 676654 -chrXIII 675746 677016 MC_gene_7121 1 - 675746 677016 -chrXIII 676954 677811 MC_gene_7122 3 - 676954 677811 -chrXIII 679688 680004 MC_gene_7123 1 - 679688 680004 -chrXIII 680100 682579 MC_gene_7124 1 - 680100 682579 -chrXIII 681116 684000 MC_gene_7125 1 - 681116 684000 -chrXIII 685741 687309 HC_gene_7126 32 - 685741 687309 -chrXIII 687443 688847 HC_gene_7127 8 - 687443 688847 -chrXIII 690227 693190 HC_gene_7128 22 - 690227 693190 -chrXIII 695329 695936 MC_gene_7129 1 - 695329 695936 -chrXIII 698028 701215 HC_gene_7130 48 - 698028 701215 -chrXIII 703358 706945 HC_gene_7131 8 - 703358 706945 -chrXIII 709990 710840 MC_gene_7132 1 - 709990 710840 -chrXIII 710953 711713 LC_gene_7133 1 - 710953 711713 -chrXIII 712169 712727 MC_gene_7134 1 - 712169 712727 -chrXIII 713833 715456 HC_gene_7135 46 - 713833 715456 -chrXIII 715550 716338 HC_gene_7136 80 - 715550 716338 -chrXIII 717829 719496 MC_gene_7137 1 - 717829 719496 -chrXIII 718071 720704 MC_gene_7138 1 - 718071 720704 -chrXIII 720800 721425 HC_gene_7139 165 - 720800 721425 -chrXIII 721362 722429 HC_gene_7140 293 - 721362 722429 -chrXIII 722512 724433 HC_gene_7141 28 - 722512 724433 -chrXIII 724669 725599 LC_gene_7142 1 - 724669 725599 -chrXIII 725627 731226 HC_gene_7143 198 - 725627 731226 -chrXIII 731464 732101 HC_gene_7144 35 - 731464 732101 -chrXIII 735127 736140 LC_gene_7145 1 - 735127 736140 -chrXIII 738141 738964 LC_gene_7146 1 - 738141 738964 -chrXIII 740183 740761 LC_gene_7147 1 - 740183 740761 -chrXIII 741337 742760 HC_gene_7148 337 - 741337 742760 -chrXIII 746888 747632 LC_gene_7149 1 - 746888 747632 -chrXIII 747723 747958 MC_gene_7150 1 - 747723 747958 -chrXIII 748111 749728 HC_gene_7151 21 - 748111 749728 -chrXIII 749877 751633 HC_gene_7152 21 - 749877 751633 -chrXIII 753101 754242 HC_gene_7153 2223 - 753101 754242 -chrXIII 754623 756278 HC_gene_7154 267 - 754623 756278 -chrXIII 757124 757626 LC_gene_7155 1 - 757124 757626 -chrXIII 758400 759331 HC_gene_7156 184 - 758400 759331 -chrXIII 761871 763248 HC_gene_7157 198 - 761871 763248 -chrXIII 763289 766004 LC_gene_7158 1 - 763289 766004 -chrXIII 766068 768110 HC_gene_7159 1 - 766068 768110 -chrXIII 768689 770499 MC_gene_7160 3 - 768689 770499 -chrXIII 772761 773563 HC_gene_7161 4 - 772761 773563 -chrXIII 773644 774013 MC_gene_7162 1 - 773644 774013 -chrXIII 774368 775069 MC_gene_7163 1 - 774368 775069 -chrXIII 775130 777203 HC_gene_7164 92 - 775130 777203 -chrXIII 778665 779165 HC_gene_7165 378 - 778665 779165 -chrXIII 779281 782420 HC_gene_7166 2 - 779281 782420 -chrXIII 782562 784330 HC_gene_7167 14 - 782562 784330 -chrXIII 784568 788943 HC_gene_7168 5 - 784568 788943 -chrXIII 789055 789865 HC_gene_7169 1218 - 789055 789865 -chrXIII 790057 793540 HC_gene_7170 37 - 790057 793540 -chrXIII 795414 797914 HC_gene_7171 13 - 795414 797914 -chrXIII 797964 798352 MC_gene_7172 1 - 797964 798352 -chrXIII 801474 801929 MC_gene_7173 1 - 801474 801929 -chrXIII 802725 804265 HC_gene_7174 12 - 802725 804265 -chrXIII 805217 806565 HC_gene_7175 21 - 805217 806565 -chrXIII 806730 808113 HC_gene_7176 67 - 806730 808113 -chrXIII 808482 808918 HC_gene_7177 33 - 808482 808918 -chrXIII 809453 810889 HC_gene_7178 311 - 809453 810889 -chrXIII 811154 814169 HC_gene_7179 10 - 811154 814169 -chrXIII 814299 815359 HC_gene_7180 24 - 814299 815359 -chrXIII 815556 818633 HC_gene_7181 4 - 815556 818633 -chrXIII 819858 820493 LC_gene_7182 1 - 819858 820493 -chrXIII 821625 822675 LC_gene_7183 1 - 821625 822675 -chrXIII 826982 831437 HC_gene_7184 3 - 826982 831437 -chrXIII 832347 832956 HC_gene_7185 3 - 832347 832956 -chrXIII 833270 835146 HC_gene_7186 31 - 833270 835146 -chrXIII 835249 836851 HC_gene_7187 8 - 835249 836851 -chrXIII 839965 841699 HC_gene_7188 24 - 839965 841699 -chrXIII 842325 845382 HC_gene_7189 11 - 842325 845382 -chrXIII 847035 847882 MC_gene_7190 1 - 847035 847882 -chrXIII 848400 849732 LC_gene_7191 1 - 848400 849732 -chrXIII 849917 851622 HC_gene_7192 239 - 849917 851622 -chrXIII 851862 852256 HC_gene_7193 2 - 851862 852256 -chrXIII 852429 852788 MC_gene_7194 1 - 852429 852788 -chrXIII 854460 854975 MC_gene_7195 1 - 854460 854975 -chrXIII 855310 856832 HC_gene_7196 11 - 855310 856832 -chrXIII 858084 858946 HC_gene_7197 434 - 858084 858946 -chrXIII 859127 861005 HC_gene_7198 147 - 859127 861005 -chrXIII 861295 861704 MC_gene_7199 2 - 861295 861704 -chrXIII 862940 863458 LC_gene_7200 1 - 862940 863458 -chrXIII 864298 865402 HC_gene_7201 23 - 864298 865402 -chrXIII 865493 867358 HC_gene_7202 242 - 865493 867358 -chrXIII 867478 869680 MC_gene_7203 1 - 867478 869680 -chrXIII 869970 872663 HC_gene_7204 41 - 869970 872663 -chrXIII 873195 874393 HC_gene_7205 3 - 873195 874393 -chrXIII 878761 880399 HC_gene_7206 1096 - 878761 880399 -chrXIII 881970 885531 LC_gene_7207 1 - 881970 885531 -chrXIII 885447 886397 HC_gene_7208 1 - 885447 886397 -chrXIII 888766 892366 HC_gene_7209 34 - 888766 892366 -chrXIII 892672 893775 HC_gene_7210 156 - 892672 893775 -chrXIII 893866 895483 HC_gene_7211 1 - 893866 895483 -chrXIII 895641 896714 HC_gene_7212 35 - 895641 896714 -chrXIII 896800 897643 HC_gene_7213 267 - 896800 897643 -chrXIII 898003 898275 MC_gene_7214 1 - 898003 898275 -chrXIII 898310 899016 MC_gene_7215 1 - 898310 899016 -chrXIII 899192 901322 HC_gene_7216 22 - 899192 901322 -chrXIII 902067 902485 MC_gene_7217 1 - 902067 902485 -chrXIII 902521 903560 MC_gene_7218 1 - 902521 903560 -chrXIII 903531 904129 MC_gene_7219 1 - 903531 904129 -chrXIII 904131 904522 HC_gene_7220 3 - 904131 904522 -chrXIII 906609 908896 HC_gene_7221 1 - 906609 908896 -chrXIII 906759 910804 HC_gene_7222 3 - 906759 910804 -chrXIII 910901 912261 HC_gene_7223 400 - 910901 912261 -chrXIII 912651 914672 HC_gene_7224 78 - 912651 914672 -chrXIII 914600 915056 HC_gene_7225 2 - 914600 915056 -chrXIV 9125 9560 MC_gene_7226 1 + 9125 9560 -chrXIV 13085 14314 MC_gene_7227 1 + 13085 14314 -chrXIV 14824 16002 MC_gene_7228 1 + 14824 16002 -chrXIV 16418 17817 MC_gene_7229 1 + 16418 17817 -chrXIV 17229 18026 MC_gene_7230 1 + 17229 18026 -chrXIV 24015 24882 HC_gene_7231 4 + 24015 24882 -chrXIV 25841 27296 HC_gene_7232 18 + 25841 27296 -chrXIV 26489 27361 HC_gene_7233 193 + 26489 27361 -chrXIV 28010 28771 MC_gene_7234 1 + 28010 28771 -chrXIV 28817 29347 LC_gene_7235 1 + 28817 29347 -chrXIV 31049 31571 LC_gene_7236 1 + 31049 31571 -chrXIV 31874 33334 HC_gene_7237 78 + 31874 33334 -chrXIV 33336 34502 LC_gene_7238 1 + 33336 34502 -chrXIV 34668 37557 HC_gene_7239 12 + 34668 37557 -chrXIV 37641 38743 HC_gene_7240 70 + 37641 38743 -chrXIV 40606 42119 HC_gene_7241 19 + 40606 42119 -chrXIV 44428 45377 HC_gene_7242 34 + 44428 45377 -chrXIV 48246 49415 HC_gene_7243 109 + 48246 49415 -chrXIV 52612 54115 HC_gene_7244 9 + 52612 54115 -chrXIV 58124 58926 HC_gene_7245 262 + 58124 58926 -chrXIV 60268 61682 HC_gene_7246 15 + 60268 61682 -chrXIV 65650 66309 HC_gene_7247 406 + 65650 66309 -chrXIV 66432 68506 MC_gene_7248 1 + 66432 68506 -chrXIV 68722 71553 HC_gene_7249 4 + 68722 71553 -chrXIV 76795 78663 HC_gene_7250 17 + 76795 78663 -chrXIV 80597 82674 HC_gene_7251 17 + 80597 82674 -chrXIV 82795 84129 HC_gene_7252 75 + 82795 84129 -chrXIV 85448 86095 MC_gene_7253 1 + 85448 86095 -chrXIV 86191 87292 HC_gene_7254 55 + 86191 87292 -chrXIV 87814 88869 HC_gene_7255 94 + 87814 88869 -chrXIV 89071 89627 HC_gene_7256 26 + 89071 89627 -chrXIV 90160 91572 HC_gene_7257 56 + 90160 91572 -chrXIV 91803 95030 HC_gene_7258 91 + 91803 95030 -chrXIV 95129 96168 HC_gene_7259 54 + 95129 96168 -chrXIV 102797 103146 MC_gene_7260 1 + 102797 103146 -chrXIV 104276 105042 HC_gene_7261 1 + 104276 105042 -chrXIV 105471 107532 LC_gene_7262 1 + 105471 107532 -chrXIV 107661 109122 HC_gene_7263 406 + 107661 109122 -chrXIV 110899 113170 LC_gene_7264 1 + 110899 113170 -chrXIV 113197 116800 HC_gene_7265 5 + 113197 116800 -chrXIV 117237 118925 HC_gene_7266 18 + 117237 118925 -chrXIV 119060 121180 HC_gene_7267 28 + 119060 121180 -chrXIV 122874 126669 HC_gene_7268 2 + 122874 126669 -chrXIV 138186 140646 HC_gene_7269 193 + 138186 140646 -chrXIV 140792 144295 HC_gene_7270 22 + 140792 144295 -chrXIV 145530 145826 LC_gene_7271 1 + 145530 145826 -chrXIV 147187 147629 LC_gene_7272 1 + 147187 147629 -chrXIV 148197 155030 MC_gene_7273 3 + 148197 155030 -chrXIV 153097 155120 MC_gene_7274 1 + 153097 155120 -chrXIV 155089 157035 HC_gene_7275 17 + 155089 157035 -chrXIV 160631 161966 MC_gene_7276 1 + 160631 161966 -chrXIV 164536 167141 HC_gene_7277 17 + 164536 167141 -chrXIV 167259 167877 LC_gene_7278 1 + 167259 167877 -chrXIV 168061 168754 MC_gene_7279 1 + 168061 168754 -chrXIV 169415 170027 HC_gene_7280 5 + 169415 170027 -chrXIV 169984 171444 HC_gene_7281 25 + 169984 171444 -chrXIV 172785 174438 LC_gene_7282 1 + 172785 174438 -chrXIV 174928 175509 MC_gene_7283 1 + 174928 175509 -chrXIV 175394 179873 MC_gene_7284 4 + 175394 179873 -chrXIV 179699 181099 MC_gene_7285 2 + 179699 181099 -chrXIV 182886 185384 HC_gene_7286 31 + 182886 185384 -chrXIV 185457 186628 HC_gene_7287 18 + 185457 186628 -chrXIV 185698 186776 HC_gene_7288 19 + 185698 186776 -chrXIV 187987 191079 HC_gene_7289 43 + 187987 191079 -chrXIV 191228 196150 MC_gene_7290 3 + 191228 196150 -chrXIV 197409 197890 LC_gene_7291 1 + 197409 197890 -chrXIV 198179 198513 MC_gene_7292 1 + 198179 198513 -chrXIV 198450 200574 LC_gene_7293 1 + 198450 200574 -chrXIV 200509 202066 HC_gene_7294 136 + 200509 202066 -chrXIV 202144 205007 HC_gene_7295 21 + 202144 205007 -chrXIV 205139 206746 HC_gene_7296 12 + 205139 206746 -chrXIV 206881 209947 HC_gene_7297 11 + 206881 209947 -chrXIV 210289 211590 HC_gene_7298 16 + 210289 211590 -chrXIV 211756 214699 HC_gene_7299 5 + 211756 214699 -chrXIV 214893 216004 HC_gene_7300 114 + 214893 216004 -chrXIV 216671 217202 LC_gene_7301 1 + 216671 217202 -chrXIV 217754 218368 MC_gene_7302 1 + 217754 218368 -chrXIV 220731 221113 MC_gene_7303 1 + 220731 221113 -chrXIV 221083 222292 LC_gene_7304 1 + 221083 222292 -chrXIV 222367 222727 LC_gene_7305 1 + 222367 222727 -chrXIV 224739 225582 LC_gene_7306 1 + 224739 225582 -chrXIV 227364 228938 HC_gene_7307 9 + 227364 228938 -chrXIV 229055 231070 HC_gene_7308 61 + 229055 231070 -chrXIV 234015 234260 MC_gene_7309 1 + 234015 234260 -chrXIV 234320 235811 HC_gene_7310 628 + 234320 235811 -chrXIV 237993 241432 HC_gene_7311 128 + 237993 241432 -chrXIV 241647 244310 HC_gene_7312 17 + 241647 244310 -chrXIV 244379 246478 HC_gene_7313 190 + 244379 246478 -chrXIV 247417 249969 HC_gene_7314 49 + 247417 249969 -chrXIV 252034 254042 HC_gene_7315 1953 + 252034 254042 -chrXIV 254397 255115 HC_gene_7316 1192 + 254397 255115 -chrXIV 255210 257759 HC_gene_7317 64 + 255210 257759 -chrXIV 259554 260567 HC_gene_7318 10 + 259554 260567 -chrXIV 263683 264834 MC_gene_7319 1 + 263683 264834 -chrXIV 267125 267503 LC_gene_7320 1 + 267125 267503 -chrXIV 270161 271201 HC_gene_7321 11 + 270161 271201 -chrXIV 272017 272586 HC_gene_7322 6 + 272017 272586 -chrXIV 274346 276333 HC_gene_7323 21 + 274346 276333 -chrXIV 276385 279989 HC_gene_7324 113 + 276385 279989 -chrXIV 280371 281608 HC_gene_7325 41 + 280371 281608 -chrXIV 282106 283788 HC_gene_7326 1335 + 282106 283788 -chrXIV 284059 284279 HC_gene_7327 3 + 284059 284279 -chrXIV 284064 286122 HC_gene_7328 112 + 284064 286122 -chrXIV 286249 287678 HC_gene_7329 24 + 286249 287678 -chrXIV 287777 291984 HC_gene_7330 10 + 287777 291984 -chrXIV 289303 292156 HC_gene_7331 39 + 289303 292156 -chrXIV 292509 293143 MC_gene_7332 1 + 292509 293143 -chrXIV 298264 299674 HC_gene_7333 53 + 298264 299674 -chrXIV 301116 301949 LC_gene_7334 1 + 301116 301949 -chrXIV 302661 303631 HC_gene_7335 2267 + 302661 303631 -chrXIV 304055 304526 LC_gene_7336 1 + 304055 304526 -chrXIV 307555 307979 LC_gene_7337 1 + 307555 307979 -chrXIV 309382 309758 LC_gene_7338 1 + 309382 309758 -chrXIV 315443 316201 HC_gene_7339 1 + 315443 316201 -chrXIV 317995 319594 HC_gene_7340 14 + 317995 319594 -chrXIV 321907 322262 MC_gene_7341 1 + 321907 322262 -chrXIV 323757 325274 HC_gene_7342 13 + 323757 325274 -chrXIV 326235 326774 MC_gene_7343 1 + 326235 326774 -chrXIV 330310 330984 HC_gene_7344 32 + 330310 330984 -chrXIV 331303 332250 HC_gene_7345 2494 + 331303 332250 -chrXIV 332424 335320 HC_gene_7346 7 + 332424 335320 -chrXIV 335298 339185 HC_gene_7347 1154 + 335298 339185 -chrXIV 339574 341163 HC_gene_7348 221 + 339574 341163 -chrXIV 342399 343512 HC_gene_7349 77 + 342399 343512 -chrXIV 343755 346377 LC_gene_7350 1 + 343755 346377 -chrXIV 346299 347630 HC_gene_7351 29 + 346299 347630 -chrXIV 348003 349340 LC_gene_7352 1 + 348003 349340 -chrXIV 350550 351461 HC_gene_7353 337 + 350550 351461 -chrXIV 351643 352344 HC_gene_7354 11 + 351643 352344 -chrXIV 352371 352705 HC_gene_7355 3 + 352371 352705 -chrXIV 354312 355250 MC_gene_7356 2 + 354312 355250 -chrXIV 355863 356484 HC_gene_7357 28 + 355863 356484 -chrXIV 356530 357398 HC_gene_7358 1 + 356530 357398 -chrXIV 357171 359032 HC_gene_7359 20 + 357171 359032 -chrXIV 359569 360695 HC_gene_7360 208 + 359569 360695 -chrXIV 361225 362079 MC_gene_7361 1 + 361225 362079 -chrXIV 366012 366631 HC_gene_7362 115 + 366012 366631 -chrXIV 366708 368484 HC_gene_7363 217 + 366708 368484 -chrXIV 370357 371774 HC_gene_7364 127 + 370357 371774 -chrXIV 372464 374189 HC_gene_7365 3 + 372464 374189 -chrXIV 373987 374329 HC_gene_7366 3 + 373987 374329 -chrXIV 375228 378580 HC_gene_7367 27 + 375228 378580 -chrXIV 378718 379556 HC_gene_7368 472 + 378718 379556 -chrXIV 380577 380958 LC_gene_7369 1 + 380577 380958 -chrXIV 381110 382534 HC_gene_7370 68 + 381110 382534 -chrXIV 383909 387077 HC_gene_7371 7 + 383909 387077 -chrXIV 387170 389734 HC_gene_7372 7 + 387170 389734 -chrXIV 392851 395121 HC_gene_7373 72 + 392851 395121 -chrXIV 394650 397967 HC_gene_7374 47 + 394650 397967 -chrXIV 401031 402972 HC_gene_7375 24 + 401031 402972 -chrXIV 407484 408105 HC_gene_7376 3 + 407484 408105 -chrXIV 408279 410074 HC_gene_7377 30 + 408279 410074 -chrXIV 412724 413371 HC_gene_7378 322 + 412724 413371 -chrXIV 413596 416918 HC_gene_7379 770 + 413596 416918 -chrXIV 417811 418245 MC_gene_7380 1 + 417811 418245 -chrXIV 418815 419016 HC_gene_7381 3 + 418815 419016 -chrXIV 420093 421011 HC_gene_7382 42 + 420093 421011 -chrXIV 424843 427115 MC_gene_7383 1 + 424843 427115 -chrXIV 427583 429835 HC_gene_7384 20 + 427583 429835 -chrXIV 430006 434602 HC_gene_7385 3 + 430006 434602 -chrXIV 434119 434673 HC_gene_7386 18 + 434119 434673 -chrXIV 434797 437427 HC_gene_7387 12 + 434797 437427 -chrXIV 437565 438459 HC_gene_7388 155 + 437565 438459 -chrXIV 438584 439575 HC_gene_7389 3 + 438584 439575 -chrXIV 439674 440211 LC_gene_7390 1 + 439674 440211 -chrXIV 440777 441368 HC_gene_7391 15 + 440777 441368 -chrXIV 443023 443293 MC_gene_7392 1 + 443023 443293 -chrXIV 444836 445971 HC_gene_7393 10 + 444836 445971 -chrXIV 447336 449586 HC_gene_7394 40 + 447336 449586 -chrXIV 449809 450803 MC_gene_7395 1 + 449809 450803 -chrXIV 450820 452295 MC_gene_7396 3 + 450820 452295 -chrXIV 452259 456358 HC_gene_7397 49 + 452259 456358 -chrXIV 456419 457526 HC_gene_7398 69 + 456419 457526 -chrXIV 457630 462351 HC_gene_7399 116 + 457630 462351 -chrXIV 464387 464651 HC_gene_7400 1 + 464387 464651 -chrXIV 465181 466141 HC_gene_7401 33 + 465181 466141 -chrXIV 466248 466899 HC_gene_7402 16 + 466248 466899 -chrXIV 467469 467878 MC_gene_7403 1 + 467469 467878 -chrXIV 468464 470145 HC_gene_7404 134 + 468464 470145 -chrXIV 471365 473115 HC_gene_7405 25 + 471365 473115 -chrXIV 473357 476163 HC_gene_7406 9 + 473357 476163 -chrXIV 477037 478206 LC_gene_7407 1 + 477037 478206 -chrXIV 478530 479120 LC_gene_7408 1 + 478530 479120 -chrXIV 479498 481279 HC_gene_7409 61 + 479498 481279 -chrXIV 481106 483021 HC_gene_7410 28 + 481106 483021 -chrXIV 483296 485409 HC_gene_7411 12 + 483296 485409 -chrXIV 485528 486747 HC_gene_7412 83 + 485528 486747 -chrXIV 486715 487901 LC_gene_7413 1 + 486715 487901 -chrXIV 488380 490215 HC_gene_7414 23 + 488380 490215 -chrXIV 490294 491324 HC_gene_7415 32 + 490294 491324 -chrXIV 491490 493128 HC_gene_7416 201 + 491490 493128 -chrXIV 493312 493686 HC_gene_7417 530 + 493312 493686 -chrXIV 493760 494207 LC_gene_7418 1 + 493760 494207 -chrXIV 495410 495660 MC_gene_7419 1 + 495410 495660 -chrXIV 499646 500486 HC_gene_7420 933 + 499646 500486 -chrXIV 500930 501194 HC_gene_7421 2 + 500930 501194 -chrXIV 501483 503608 HC_gene_7422 276 + 501483 503608 -chrXIV 503629 505667 HC_gene_7423 70 + 503629 505667 -chrXIV 507642 508747 HC_gene_7424 32 + 507642 508747 -chrXIV 510499 512508 HC_gene_7425 125 + 510499 512508 -chrXIV 515179 516093 HC_gene_7426 11 + 515179 516093 -chrXIV 517152 518108 HC_gene_7427 172 + 517152 518108 -chrXIV 519704 525048 MC_gene_7428 4 + 519704 525048 -chrXIV 523354 525601 MC_gene_7429 2 + 523354 525601 -chrXIV 526028 529845 HC_gene_7430 5 + 526028 529845 -chrXIV 529830 531664 HC_gene_7431 27 + 529830 531664 -chrXIV 531689 532444 HC_gene_7432 325 + 531689 532444 -chrXIV 532651 534093 HC_gene_7433 36 + 532651 534093 -chrXIV 535198 535486 MC_gene_7434 1 + 535198 535486 -chrXIV 538153 539920 HC_gene_7435 32 + 538153 539920 -chrXIV 542112 542977 HC_gene_7436 90 + 542112 542977 -chrXIV 543008 545185 HC_gene_7437 43 + 543008 545185 -chrXIV 545203 546046 HC_gene_7438 237 + 545203 546046 -chrXIV 546256 546736 HC_gene_7439 5 + 546256 546736 -chrXIV 547944 549394 HC_gene_7440 17 + 547944 549394 -chrXIV 552234 553267 MC_gene_7441 2 + 552234 553267 -chrXIV 553333 554904 HC_gene_7442 25 + 553333 554904 -chrXIV 555005 556886 HC_gene_7443 75 + 555005 556886 -chrXIV 557018 557886 HC_gene_7444 71 + 557018 557886 -chrXIV 559038 559336 HC_gene_7445 2 + 559038 559336 -chrXIV 559664 560650 HC_gene_7446 220 + 559664 560650 -chrXIV 561401 562222 MC_gene_7447 1 + 561401 562222 -chrXIV 566747 567854 LC_gene_7448 1 + 566747 567854 -chrXIV 568403 569771 MC_gene_7449 1 + 568403 569771 -chrXIV 571846 572506 LC_gene_7450 1 + 571846 572506 -chrXIV 572874 573963 MC_gene_7451 1 + 572874 573963 -chrXIV 574377 576666 HC_gene_7452 50 + 574377 576666 -chrXIV 576695 577216 HC_gene_7453 2694 + 576695 577216 -chrXIV 579419 581731 HC_gene_7454 14 + 579419 581731 -chrXIV 581885 583803 HC_gene_7455 25 + 581885 583803 -chrXIV 585585 586333 HC_gene_7456 49 + 585585 586333 -chrXIV 587684 588258 HC_gene_7457 3 + 587684 588258 -chrXIV 587895 588327 HC_gene_7458 26 + 587895 588327 -chrXIV 593157 595572 HC_gene_7459 2 + 593157 595572 -chrXIV 593347 596861 HC_gene_7460 1 + 593347 596861 -chrXIV 597949 599915 HC_gene_7461 1 + 597949 599915 -chrXIV 600873 601957 MC_gene_7462 1 + 600873 601957 -chrXIV 602856 604763 HC_gene_7463 537 + 602856 604763 -chrXIV 604965 605788 HC_gene_7464 354 + 604965 605788 -chrXIV 606551 609526 HC_gene_7465 1 + 606551 609526 -chrXIV 610968 611957 HC_gene_7466 21 + 610968 611957 -chrXIV 613594 614512 HC_gene_7467 435 + 613594 614512 -chrXIV 614785 616943 HC_gene_7468 14 + 614785 616943 -chrXIV 618521 619635 LC_gene_7469 1 + 618521 619635 -chrXIV 620055 621273 HC_gene_7470 54 + 620055 621273 -chrXIV 622877 624764 HC_gene_7471 132 + 622877 624764 -chrXIV 624871 625357 MC_gene_7472 1 + 624871 625357 -chrXIV 625464 626182 MC_gene_7473 1 + 625464 626182 -chrXIV 627391 628689 HC_gene_7474 53 + 627391 628689 -chrXIV 629177 629631 HC_gene_7475 20 + 629177 629631 -chrXIV 631331 631654 MC_gene_7476 1 + 631331 631654 -chrXIV 631824 632263 MC_gene_7477 1 + 631824 632263 -chrXIV 632862 634081 HC_gene_7478 18 + 632862 634081 -chrXIV 635468 636799 HC_gene_7479 26 + 635468 636799 -chrXIV 636963 638983 HC_gene_7480 32 + 636963 638983 -chrXIV 640363 643627 HC_gene_7481 59 + 640363 643627 -chrXIV 643700 644273 HC_gene_7482 63 + 643700 644273 -chrXIV 644653 645551 LC_gene_7483 1 + 644653 645551 -chrXIV 647338 649016 HC_gene_7484 22 + 647338 649016 -chrXIV 652160 652443 HC_gene_7485 1 + 652160 652443 -chrXIV 652412 653273 HC_gene_7486 60 + 652412 653273 -chrXIV 653378 654648 HC_gene_7487 46 + 653378 654648 -chrXIV 662311 663855 HC_gene_7488 328 + 662311 663855 -chrXIV 664247 665074 HC_gene_7489 216 + 664247 665074 -chrXIV 665295 667412 HC_gene_7490 41 + 665295 667412 -chrXIV 668348 669799 HC_gene_7491 248 + 668348 669799 -chrXIV 670376 672218 HC_gene_7492 12 + 670376 672218 -chrXIV 672391 673091 HC_gene_7493 108 + 672391 673091 -chrXIV 674907 676139 HC_gene_7494 45 + 674907 676139 -chrXIV 676092 677195 HC_gene_7495 79 + 676092 677195 -chrXIV 677588 678610 LC_gene_7496 1 + 677588 678610 -chrXIV 678739 680693 HC_gene_7497 50 + 678739 680693 -chrXIV 685903 687252 HC_gene_7498 41 + 685903 687252 -chrXIV 687627 690071 HC_gene_7499 7 + 687627 690071 -chrXIV 690216 691560 HC_gene_7500 42 + 690216 691560 -chrXIV 692266 692960 HC_gene_7501 293 + 692266 692960 -chrXIV 695589 697638 HC_gene_7502 10 + 695589 697638 -chrXIV 699683 700591 HC_gene_7503 9 + 699683 700591 -chrXIV 701880 703433 HC_gene_7504 153 + 701880 703433 -chrXIV 703580 705943 HC_gene_7505 85 + 703580 705943 -chrXIV 706112 707653 HC_gene_7506 8 + 706112 707653 -chrXIV 707774 708339 HC_gene_7507 201 + 707774 708339 -chrXIV 709214 711415 HC_gene_7508 10 + 709214 711415 -chrXIV 711601 713000 HC_gene_7509 19 + 711601 713000 -chrXIV 713411 713847 LC_gene_7510 1 + 713411 713847 -chrXIV 716114 716540 HC_gene_7511 159 + 716114 716540 -chrXIV 719514 720747 LC_gene_7512 1 + 719514 720747 -chrXIV 723473 723881 LC_gene_7513 1 + 723473 723881 -chrXIV 724497 726012 HC_gene_7514 9 + 724497 726012 -chrXIV 726468 727526 MC_gene_7515 1 + 726468 727526 -chrXIV 727746 728327 HC_gene_7516 1 + 727746 728327 -chrXIV 728416 729301 MC_gene_7517 1 + 728416 729301 -chrXIV 731318 733349 HC_gene_7518 3 + 731318 733349 -chrXIV 734413 735853 HC_gene_7519 3 + 734413 735853 -chrXIV 735934 736443 LC_gene_7520 1 + 735934 736443 -chrXIV 736748 738779 HC_gene_7521 12 + 736748 738779 -chrXIV 739575 740032 MC_gene_7522 1 + 739575 740032 -chrXIV 740090 742175 HC_gene_7523 1 + 740090 742175 -chrXIV 742348 742652 HC_gene_7524 10 + 742348 742652 -chrXIV 743809 746385 HC_gene_7525 1 + 743809 746385 -chrXIV 746798 749733 MC_gene_7526 2 + 746798 749733 -chrXIV 748953 750359 MC_gene_7527 1 + 748953 750359 -chrXIV 755294 755736 HC_gene_7528 1 + 755294 755736 -chrXIV 758362 759323 MC_gene_7529 1 + 758362 759323 -chrXIV 759975 760817 MC_gene_7530 1 + 759975 760817 -chrXIV 763388 763912 HC_gene_7531 2 + 763388 763912 -chrXIV 764437 764977 MC_gene_7532 1 + 764437 764977 -chrXIV 769197 770150 MC_gene_7533 1 + 769197 770150 -chrXIV 769509 770205 MC_gene_7534 1 + 769509 770205 -chrXIV 769732 770257 MC_gene_7535 1 + 769732 770257 -chrXIV 770260 771611 MC_gene_7536 1 + 770260 771611 -chrXIV 771762 774430 LC_gene_7537 1 + 771762 774430 -chrXIV 774674 775178 LC_gene_7538 1 + 774674 775178 -chrXIV 775880 777319 LC_gene_7539 1 + 775880 777319 -chrXIV 779128 780204 HC_gene_7540 7 + 779128 780204 -chrXIV 781706 782419 MC_gene_7541 1 + 781706 782419 -chrXIV 304 3509 LC_gene_7542 1 - 304 3509 -chrXIV 7401 8225 LC_gene_7543 1 - 7401 8225 -chrXIV 9411 9989 LC_gene_7544 1 - 9411 9989 -chrXIV 10366 12083 MC_gene_7545 1 - 10366 12083 -chrXIV 12096 12969 MC_gene_7546 1 - 12096 12969 -chrXIV 16054 16242 HC_gene_7547 1 - 16054 16242 -chrXIV 17738 19347 HC_gene_7548 99 - 17738 19347 -chrXIV 19477 23296 HC_gene_7549 6 - 19477 23296 -chrXIV 27161 28380 HC_gene_7550 23 - 27161 28380 -chrXIV 28685 31409 HC_gene_7551 5 - 28685 31409 -chrXIV 32717 34254 HC_gene_7552 209 - 32717 34254 -chrXIV 35985 37442 LC_gene_7553 1 - 35985 37442 -chrXIV 42013 43132 HC_gene_7554 17 - 42013 43132 -chrXIV 43217 44279 HC_gene_7555 62 - 43217 44279 -chrXIV 45218 48054 HC_gene_7556 15 - 45218 48054 -chrXIV 48263 48938 LC_gene_7557 1 - 48263 48938 -chrXIV 49302 51694 HC_gene_7558 3 - 49302 51694 -chrXIV 51707 52464 HC_gene_7559 58 - 51707 52464 -chrXIV 53981 55939 HC_gene_7560 280 - 53981 55939 -chrXIV 56104 57740 HC_gene_7561 196 - 56104 57740 -chrXIV 58808 59823 HC_gene_7562 94 - 58808 59823 -chrXIV 60186 61040 LC_gene_7563 1 - 60186 61040 -chrXIV 61774 63103 HC_gene_7564 2701 - 61774 63103 -chrXIV 63403 64633 HC_gene_7565 564 - 63403 64633 -chrXIV 64850 66247 MC_gene_7566 1 - 64850 66247 -chrXIV 68012 68366 LC_gene_7567 1 - 68012 68366 -chrXIV 68411 68903 MC_gene_7568 1 - 68411 68903 -chrXIV 71440 76615 HC_gene_7569 5 - 71440 76615 -chrXIV 77935 78180 MC_gene_7570 1 - 77935 78180 -chrXIV 78493 80435 HC_gene_7571 37 - 78493 80435 -chrXIV 82018 82606 LC_gene_7572 1 - 82018 82606 -chrXIV 84014 86030 HC_gene_7573 10 - 84014 86030 -chrXIV 87737 88565 LC_gene_7574 1 - 87737 88565 -chrXIV 88767 89591 MC_gene_7575 1 - 88767 89591 -chrXIV 90659 91536 MC_gene_7576 1 - 90659 91536 -chrXIV 94936 96111 HC_gene_7577 1 - 94936 96111 -chrXIV 102896 104056 HC_gene_7578 83 - 102896 104056 -chrXIV 104954 107088 HC_gene_7579 48 - 104954 107088 -chrXIV 107682 108087 MC_gene_7580 1 - 107682 108087 -chrXIV 108772 110473 HC_gene_7581 39 - 108772 110473 -chrXIV 110759 112716 HC_gene_7582 3 - 110759 112716 -chrXIV 114317 116542 MC_gene_7583 1 - 114317 116542 -chrXIV 117059 118639 HC_gene_7584 2 - 117059 118639 -chrXIV 118806 119122 HC_gene_7585 2 - 118806 119122 -chrXIV 121010 122216 HC_gene_7586 53 - 121010 122216 -chrXIV 126690 129181 HC_gene_7587 22 - 126690 129181 -chrXIV 129343 132955 HC_gene_7588 69 - 129343 132955 -chrXIV 132960 133267 MC_gene_7589 1 - 132960 133267 -chrXIV 133914 135493 MC_gene_7590 2 - 133914 135493 -chrXIV 135845 137850 HC_gene_7591 1 - 135845 137850 -chrXIV 137759 140506 LC_gene_7592 1 - 137759 140506 -chrXIV 144036 145303 HC_gene_7593 41 - 144036 145303 -chrXIV 145268 146624 HC_gene_7594 61 - 145268 146624 -chrXIV 146695 147982 HC_gene_7595 112 - 146695 147982 -chrXIV 153484 154056 LC_gene_7596 1 - 153484 154056 -chrXIV 156339 157360 HC_gene_7597 75 - 156339 157360 -chrXIV 157528 160382 HC_gene_7598 453 - 157528 160382 -chrXIV 160586 164377 HC_gene_7599 3 - 160586 164377 -chrXIV 165685 167001 HC_gene_7600 2 - 165685 167001 -chrXIV 167178 169266 HC_gene_7601 1209 - 167178 169266 -chrXIV 169871 171090 LC_gene_7602 1 - 169871 171090 -chrXIV 171287 172285 HC_gene_7603 92 - 171287 172285 -chrXIV 172424 174617 HC_gene_7604 74 - 172424 174617 -chrXIV 178845 181045 HC_gene_7605 9 - 178845 181045 -chrXIV 181153 182644 HC_gene_7606 157 - 181153 182644 -chrXIV 184004 185080 LC_gene_7607 1 - 184004 185080 -chrXIV 185620 186916 HC_gene_7608 24 - 185620 186916 -chrXIV 187024 187530 HC_gene_7609 1297 - 187024 187530 -chrXIV 191986 193613 LC_gene_7610 1 - 191986 193613 -chrXIV 194409 194856 MC_gene_7611 1 - 194409 194856 -chrXIV 196226 198057 HC_gene_7612 299 - 196226 198057 -chrXIV 198382 200025 HC_gene_7613 54 - 198382 200025 -chrXIV 201411 201971 HC_gene_7614 12 - 201411 201971 -chrXIV 204897 206692 HC_gene_7615 9 - 204897 206692 -chrXIV 215909 218751 HC_gene_7616 554 - 215909 218751 -chrXIV 218701 220410 HC_gene_7617 213 - 218701 220410 -chrXIV 220584 222488 HC_gene_7618 44 - 220584 222488 -chrXIV 222584 224502 HC_gene_7619 15 - 222584 224502 -chrXIV 224675 227185 HC_gene_7620 14 - 224675 227185 -chrXIV 228259 228776 LC_gene_7621 1 - 228259 228776 -chrXIV 228789 229214 MC_gene_7622 1 - 228789 229214 -chrXIV 229762 230672 HC_gene_7623 2 - 229762 230672 -chrXIV 230688 234102 HC_gene_7624 27 - 230688 234102 -chrXIV 235838 237809 HC_gene_7625 47 - 235838 237809 -chrXIV 239323 239854 MC_gene_7626 1 - 239323 239854 -chrXIV 240368 240997 MC_gene_7627 1 - 240368 240997 -chrXIV 241635 243247 LC_gene_7628 1 - 241635 243247 -chrXIV 243453 244253 MC_gene_7629 1 - 243453 244253 -chrXIV 246363 247193 HC_gene_7630 97 - 246363 247193 -chrXIV 249824 251734 HC_gene_7631 60 - 249824 251734 -chrXIV 253896 255025 HC_gene_7632 2 - 253896 255025 -chrXIV 256543 258162 HC_gene_7633 63 - 256543 258162 -chrXIV 258334 260222 MC_gene_7634 1 - 258334 260222 -chrXIV 260430 263469 HC_gene_7635 20 - 260430 263469 -chrXIV 263624 264553 HC_gene_7636 90 - 263624 264553 -chrXIV 264757 266650 HC_gene_7637 52 - 264757 266650 -chrXIV 266911 269932 HC_gene_7638 46 - 266911 269932 -chrXIV 271426 273689 HC_gene_7639 19 - 271426 273689 -chrXIV 275211 275817 HC_gene_7640 5 - 275211 275817 -chrXIV 279858 280249 MC_gene_7641 2 - 279858 280249 -chrXIV 280902 281248 LC_gene_7642 1 - 280902 281248 -chrXIV 281267 281533 MC_gene_7643 1 - 281267 281533 -chrXIV 283728 284345 LC_gene_7644 1 - 283728 284345 -chrXIV 285283 285983 LC_gene_7645 1 - 285283 285983 -chrXIV 287555 289147 LC_gene_7646 1 - 287555 289147 -chrXIV 292064 292767 HC_gene_7647 77 - 292064 292767 -chrXIV 293031 295714 HC_gene_7648 12 - 293031 295714 -chrXIV 295649 297641 HC_gene_7649 44 - 295649 297641 -chrXIV 298811 299330 LC_gene_7650 1 - 298811 299330 -chrXIV 299355 300842 HC_gene_7651 123 - 299355 300842 -chrXIV 300843 301672 HC_gene_7652 1 - 300843 301672 -chrXIV 303383 304665 HC_gene_7653 60 - 303383 304665 -chrXIV 304817 307160 HC_gene_7654 13 - 304817 307160 -chrXIV 307186 308648 HC_gene_7655 155 - 307186 308648 -chrXIV 308858 310098 HC_gene_7656 178 - 308858 310098 -chrXIV 316056 317778 HC_gene_7657 46 - 316056 317778 -chrXIV 317783 318851 HC_gene_7658 69 - 317783 318851 -chrXIV 319205 321716 HC_gene_7659 28 - 319205 321716 -chrXIV 322126 323576 HC_gene_7660 71 - 322126 323576 -chrXIV 324913 326498 HC_gene_7661 25 - 324913 326498 -chrXIV 326603 330139 HC_gene_7662 10 - 326603 330139 -chrXIV 330249 330828 HC_gene_7663 7 - 330249 330828 -chrXIV 330967 332162 MC_gene_7664 1 - 330967 332162 -chrXIV 335165 339369 HC_gene_7665 67 - 335165 339369 -chrXIV 340855 342140 HC_gene_7666 143 - 340855 342140 -chrXIV 343336 345510 HC_gene_7667 193 - 343336 345510 -chrXIV 345444 346096 HC_gene_7668 269 - 345444 346096 -chrXIV 347542 348575 HC_gene_7669 87 - 347542 348575 -chrXIV 348998 350683 HC_gene_7670 440 - 348998 350683 -chrXIV 349624 350714 HC_gene_7671 47 - 349624 350714 -chrXIV 350823 351448 HC_gene_7672 4 - 350823 351448 -chrXIV 352743 355237 HC_gene_7673 37 - 352743 355237 -chrXIV 356353 356881 HC_gene_7674 34 - 356353 356881 -chrXIV 358927 360638 MC_gene_7675 1 - 358927 360638 -chrXIV 360597 365806 HC_gene_7676 18 - 360597 365806 -chrXIV 368374 370150 HC_gene_7677 57 - 368374 370150 -chrXIV 371400 372244 HC_gene_7678 1886 - 371400 372244 -chrXIV 372371 373627 HC_gene_7679 157 - 372371 373627 -chrXIV 373978 374713 HC_gene_7680 52 - 373978 374713 -chrXIV 375730 378403 LC_gene_7681 1 - 375730 378403 -chrXIV 379253 380874 HC_gene_7682 118 - 379253 380874 -chrXIV 381224 382502 MC_gene_7683 1 - 381224 382502 -chrXIV 382712 383784 MC_gene_7684 1 - 382712 383784 -chrXIV 389969 392380 HC_gene_7685 42 - 389969 392380 -chrXIV 392957 394331 LC_gene_7686 1 - 392957 394331 -chrXIV 397668 398340 HC_gene_7687 90 - 397668 398340 -chrXIV 398445 400586 HC_gene_7688 243 - 398445 400586 -chrXIV 402521 405606 HC_gene_7689 57 - 402521 405606 -chrXIV 406139 407813 MC_gene_7690 1 - 406139 407813 -chrXIV 409956 412089 HC_gene_7691 19 - 409956 412089 -chrXIV 412665 413235 MC_gene_7692 1 - 412665 413235 -chrXIV 416658 417549 HC_gene_7693 293 - 416658 417549 -chrXIV 417703 418527 HC_gene_7694 451 - 417703 418527 -chrXIV 418866 419861 HC_gene_7695 86 - 418866 419861 -chrXIV 420821 424546 HC_gene_7696 4 - 420821 424546 -chrXIV 424776 427226 HC_gene_7697 386 - 424776 427226 -chrXIV 434466 435093 LC_gene_7698 1 - 434466 435093 -chrXIV 438216 439316 HC_gene_7699 97 - 438216 439316 -chrXIV 439480 441011 HC_gene_7700 502 - 439480 441011 -chrXIV 441168 442497 HC_gene_7701 43 - 441168 442497 -chrXIV 443191 444356 HC_gene_7702 1324 - 443191 444356 -chrXIV 444630 447051 HC_gene_7703 5 - 444630 447051 -chrXIV 449409 450640 MC_gene_7704 1 - 449409 450640 -chrXIV 450937 452013 LC_gene_7705 1 - 450937 452013 -chrXIV 457363 457685 MC_gene_7706 1 - 457363 457685 -chrXIV 459148 459440 MC_gene_7707 1 - 459148 459440 -chrXIV 462215 463864 MC_gene_7708 1 - 462215 463864 -chrXIV 462872 464986 MC_gene_7709 1 - 462872 464986 -chrXIV 464707 465310 MC_gene_7710 1 - 464707 465310 -chrXIV 466030 466604 HC_gene_7711 7 - 466030 466604 -chrXIV 469812 471157 HC_gene_7712 168 - 469812 471157 -chrXIV 472936 473135 MC_gene_7713 1 - 472936 473135 -chrXIV 472997 473553 MC_gene_7714 1 - 472997 473553 -chrXIV 475999 476659 HC_gene_7715 166 - 475999 476659 -chrXIV 476831 478185 HC_gene_7716 72 - 476831 478185 -chrXIV 478386 479358 HC_gene_7717 1053 - 478386 479358 -chrXIV 479418 480874 MC_gene_7718 1 - 479418 480874 -chrXIV 481049 481904 LC_gene_7719 1 - 481049 481904 -chrXIV 482865 483112 HC_gene_7720 7 - 482865 483112 -chrXIV 483802 485231 LC_gene_7721 1 - 483802 485231 -chrXIV 486400 488171 HC_gene_7722 42 - 486400 488171 -chrXIV 488719 490110 LC_gene_7723 1 - 488719 490110 -chrXIV 490172 491239 HC_gene_7724 4 - 490172 491239 -chrXIV 492034 493014 LC_gene_7725 1 - 492034 493014 -chrXIV 493423 495017 HC_gene_7726 1358 - 493423 495017 -chrXIV 495529 498469 HC_gene_7727 13 - 495529 498469 -chrXIV 500303 500718 MC_gene_7728 1 - 500303 500718 -chrXIV 500853 502838 HC_gene_7729 2 - 500853 502838 -chrXIV 503579 504026 LC_gene_7730 1 - 503579 504026 -chrXIV 505498 507290 HC_gene_7731 847 - 505498 507290 -chrXIV 508472 510242 HC_gene_7732 41 - 508472 510242 -chrXIV 512557 514952 HC_gene_7733 62 - 512557 514952 -chrXIV 515170 516185 HC_gene_7734 1 - 515170 516185 -chrXIV 515345 516781 HC_gene_7735 69 - 515345 516781 -chrXIV 517931 519146 HC_gene_7736 1985 - 517931 519146 -chrXIV 519281 520160 MC_gene_7737 1 - 519281 520160 -chrXIV 524712 525320 LC_gene_7738 1 - 524712 525320 -chrXIV 525527 525824 HC_gene_7739 2 - 525527 525824 -chrXIV 527429 529539 MC_gene_7740 1 - 527429 529539 -chrXIV 529747 531460 LC_gene_7741 1 - 529747 531460 -chrXIV 531612 532519 MC_gene_7742 1 - 531612 532519 -chrXIV 534008 535002 HC_gene_7743 42 - 534008 535002 -chrXIV 535092 537929 HC_gene_7744 9 - 535092 537929 -chrXIV 539821 542059 HC_gene_7745 18 - 539821 542059 -chrXIV 542118 543135 HC_gene_7746 10 - 542118 543135 -chrXIV 544973 546027 HC_gene_7747 3 - 544973 546027 -chrXIV 546036 546389 MC_gene_7748 1 - 546036 546389 -chrXIV 546817 547659 MC_gene_7749 2 - 546817 547659 -chrXIV 549280 552029 HC_gene_7750 8 - 549280 552029 -chrXIV 552133 552597 LC_gene_7751 1 - 552133 552597 -chrXIV 554381 554818 LC_gene_7752 1 - 554381 554818 -chrXIV 554930 555494 MC_gene_7753 1 - 554930 555494 -chrXIV 557797 559205 HC_gene_7754 505 - 557797 559205 -chrXIV 561284 563282 MC_gene_7755 1 - 561284 563282 -chrXIV 562112 565603 MC_gene_7756 1 - 562112 565603 -chrXIV 562122 567729 MC_gene_7757 1 - 562122 567729 -chrXIV 568312 569751 HC_gene_7758 45 - 568312 569751 -chrXIV 570411 574127 MC_gene_7759 2 - 570411 574127 -chrXIV 575380 576067 HC_gene_7760 2560 - 575380 576067 -chrXIV 577093 578822 HC_gene_7761 20 - 577093 578822 -chrXIV 579209 579439 HC_gene_7762 4 - 579209 579439 -chrXIV 582301 583182 LC_gene_7763 1 - 582301 583182 -chrXIV 583347 585395 HC_gene_7764 15 - 583347 585395 -chrXIV 586140 586867 HC_gene_7765 255 - 586140 586867 -chrXIV 587002 587869 HC_gene_7766 103 - 587002 587869 -chrXIV 587969 591210 HC_gene_7767 10 - 587969 591210 -chrXIV 591300 592925 HC_gene_7768 54 - 591300 592925 -chrXIV 595348 598155 MC_gene_7769 3 - 595348 598155 -chrXIV 599740 601038 LC_gene_7770 1 - 599740 601038 -chrXIV 602466 603035 LC_gene_7771 1 - 602466 603035 -chrXIV 604188 604671 MC_gene_7772 1 - 604188 604671 -chrXIV 604676 605005 HC_gene_7773 3 - 604676 605005 -chrXIV 605232 605730 MC_gene_7774 1 - 605232 605730 -chrXIV 605531 605885 MC_gene_7775 1 - 605531 605885 -chrXIV 605670 606343 MC_gene_7776 1 - 605670 606343 -chrXIV 607321 608015 LC_gene_7777 1 - 607321 608015 -chrXIV 610412 611174 HC_gene_7778 1 - 610412 611174 -chrXIV 611742 613445 HC_gene_7779 24 - 611742 613445 -chrXIV 614386 615487 MC_gene_7780 1 - 614386 615487 -chrXIV 615146 615668 MC_gene_7781 1 - 615146 615668 -chrXIV 615302 615992 MC_gene_7782 1 - 615302 615992 -chrXIV 616169 618267 HC_gene_7783 12 - 616169 618267 -chrXIV 618451 619280 HC_gene_7784 324 - 618451 619280 -chrXIV 619547 619693 HC_gene_7785 1 - 619547 619693 -chrXIV 621144 622473 HC_gene_7786 140 - 621144 622473 -chrXIV 621734 622660 HC_gene_7787 13 - 621734 622660 -chrXIV 624208 625862 HC_gene_7788 32 - 624208 625862 -chrXIV 625910 627178 HC_gene_7789 426 - 625910 627178 -chrXIV 629427 631161 HC_gene_7790 481 - 629427 631161 -chrXIV 631039 631191 HC_gene_7791 3 - 631039 631191 -chrXIV 632858 633897 HC_gene_7792 3 - 632858 633897 -chrXIV 633882 635329 HC_gene_7793 28 - 633882 635329 -chrXIV 635414 635717 HC_gene_7794 11 - 635414 635717 -chrXIV 635825 636741 HC_gene_7795 10 - 635825 636741 -chrXIV 638875 640173 HC_gene_7796 36 - 638875 640173 -chrXIV 640071 641861 LC_gene_7797 1 - 640071 641861 -chrXIV 642554 643524 MC_gene_7798 1 - 642554 643524 -chrXIV 644146 646969 HC_gene_7799 8 - 644146 646969 -chrXIV 648927 651744 HC_gene_7800 28 - 648927 651744 -chrXIV 652333 653149 HC_gene_7801 5 - 652333 653149 -chrXIV 654565 655383 HC_gene_7802 119 - 654565 655383 -chrXIV 660777 661396 MC_gene_7803 1 - 660777 661396 -chrXIV 661434 661909 HC_gene_7804 5 - 661434 661909 -chrXIV 661664 662399 HC_gene_7805 2 - 661664 662399 -chrXIV 663208 663621 LC_gene_7806 1 - 663208 663621 -chrXIV 663760 664501 MC_gene_7807 1 - 663760 664501 -chrXIV 667293 668138 MC_gene_7808 2 - 667293 668138 -chrXIV 668327 669505 LC_gene_7809 1 - 668327 669505 -chrXIV 669447 670219 HC_gene_7810 132 - 669447 670219 -chrXIV 672105 672495 MC_gene_7811 1 - 672105 672495 -chrXIV 672938 674709 HC_gene_7812 47 - 672938 674709 -chrXIV 676970 678518 HC_gene_7813 78 - 676970 678518 -chrXIV 680580 685714 HC_gene_7814 3 - 680580 685714 -chrXIV 687138 687644 HC_gene_7815 130 - 687138 687644 -chrXIV 690140 690701 LC_gene_7816 1 - 690140 690701 -chrXIV 691541 691949 MC_gene_7817 1 - 691541 691949 -chrXIV 692853 694056 HC_gene_7818 12 - 692853 694056 -chrXIV 694207 694833 HC_gene_7819 289 - 694207 694833 -chrXIV 694936 695344 HC_gene_7820 189 - 694936 695344 -chrXIV 697549 699479 HC_gene_7821 24 - 697549 699479 -chrXIV 700367 701684 HC_gene_7822 52 - 700367 701684 -chrXIV 702256 702462 LC_gene_7823 1 - 702256 702462 -chrXIV 705873 707741 LC_gene_7824 1 - 705873 707741 -chrXIV 711302 712979 LC_gene_7825 1 - 711302 712979 -chrXIV 712930 715850 HC_gene_7826 924 - 712930 715850 -chrXIV 715364 715936 HC_gene_7827 12 - 715364 715936 -chrXIV 716316 717155 HC_gene_7828 93 - 716316 717155 -chrXIV 718587 719073 HC_gene_7829 9 - 718587 719073 -chrXIV 719153 720725 HC_gene_7830 74 - 719153 720725 -chrXIV 720931 723156 HC_gene_7831 197 - 720931 723156 -chrXIV 723191 724334 HC_gene_7832 96 - 723191 724334 -chrXIV 725137 725967 LC_gene_7833 1 - 725137 725967 -chrXIV 726628 727226 HC_gene_7834 1 - 726628 727226 -chrXIV 727356 728266 HC_gene_7835 13 - 727356 728266 -chrXIV 728207 730630 HC_gene_7836 28 - 728207 730630 -chrXIV 733229 736081 HC_gene_7837 5 - 733229 736081 -chrXIV 736294 736908 MC_gene_7838 1 - 736294 736908 -chrXIV 740039 741904 MC_gene_7839 1 - 740039 741904 -chrXIV 740226 742191 MC_gene_7840 2 - 740226 742191 -chrXIV 742320 743627 HC_gene_7841 73 - 742320 743627 -chrXIV 744136 745808 MC_gene_7842 1 - 744136 745808 -chrXIV 746191 746733 MC_gene_7843 1 - 746191 746733 -chrXIV 748887 750020 HC_gene_7844 4 - 748887 750020 -chrXIV 750280 755086 HC_gene_7845 4 - 750280 755086 -chrXIV 755667 759146 HC_gene_7846 23 - 755667 759146 -chrXIV 759804 763875 HC_gene_7847 13 - 759804 763875 -chrXIV 764702 769381 HC_gene_7848 1 - 764702 769381 -chrXIV 770187 771857 MC_gene_7849 3 - 770187 771857 -chrXIV 773807 774466 MC_gene_7850 1 - 773807 774466 -chrXIV 774658 776371 MC_gene_7851 2 - 774658 776371 -chrXIV 777274 779232 MC_gene_7852 4 - 777274 779232 -chrXIV 779218 779763 HC_gene_7853 2 - 779218 779763 -chrXV 2683 3055 MC_gene_7854 1 + 2683 3055 -chrXV 3274 4051 MC_gene_7855 1 + 3274 4051 -chrXV 4147 5596 LC_gene_7856 1 + 4147 5596 -chrXV 5930 8228 HC_gene_7857 30 + 5930 8228 -chrXV 8889 10537 HC_gene_7858 19 + 8889 10537 -chrXV 14102 14869 MC_gene_7859 1 + 14102 14869 -chrXV 14949 15400 HC_gene_7860 2 + 14949 15400 -chrXV 15749 16849 HC_gene_7861 3 + 15749 16849 -chrXV 17945 18219 MC_gene_7862 1 + 17945 18219 -chrXV 18129 18740 MC_gene_7863 1 + 18129 18740 -chrXV 20094 21531 MC_gene_7864 1 + 20094 21531 -chrXV 21856 22311 HC_gene_7865 5 + 21856 22311 -chrXV 28462 33840 HC_gene_7866 28 + 28462 33840 -chrXV 34381 35505 HC_gene_7867 6 + 34381 35505 -chrXV 36033 38730 HC_gene_7868 2 + 36033 38730 -chrXV 38787 39064 HC_gene_7869 3 + 38787 39064 -chrXV 39857 40813 HC_gene_7870 3 + 39857 40813 -chrXV 40988 42737 HC_gene_7871 1 + 40988 42737 -chrXV 43672 44783 HC_gene_7872 147 + 43672 44783 -chrXV 44917 45754 HC_gene_7873 75 + 44917 45754 -chrXV 45861 47255 LC_gene_7874 1 + 45861 47255 -chrXV 48849 49510 HC_gene_7875 59 + 48849 49510 -chrXV 53074 54593 HC_gene_7876 49 + 53074 54593 -chrXV 55543 56345 HC_gene_7877 111 + 55543 56345 -chrXV 56422 60118 HC_gene_7878 110 + 56422 60118 -chrXV 61349 61762 LC_gene_7879 1 + 61349 61762 -chrXV 65563 67326 HC_gene_7880 39 + 65563 67326 -chrXV 69401 69746 MC_gene_7881 1 + 69401 69746 -chrXV 70289 71062 HC_gene_7882 164 + 70289 71062 -chrXV 72436 72777 HC_gene_7883 2 + 72436 72777 -chrXV 73024 73758 MC_gene_7884 1 + 73024 73758 -chrXV 74169 77352 HC_gene_7885 15 + 74169 77352 -chrXV 77532 78265 HC_gene_7886 431 + 77532 78265 -chrXV 78311 79702 LC_gene_7887 1 + 78311 79702 -chrXV 80325 81272 HC_gene_7888 2391 + 80325 81272 -chrXV 82553 83057 LC_gene_7889 1 + 82553 83057 -chrXV 83479 85387 HC_gene_7890 61 + 83479 85387 -chrXV 87476 88082 HC_gene_7891 118 + 87476 88082 -chrXV 88444 89588 HC_gene_7892 137 + 88444 89588 -chrXV 90866 91572 MC_gene_7893 1 + 90866 91572 -chrXV 91651 92044 HC_gene_7894 1 + 91651 92044 -chrXV 92071 92425 LC_gene_7895 1 + 92071 92425 -chrXV 96651 97368 HC_gene_7896 79 + 96651 97368 -chrXV 97512 99584 HC_gene_7897 4 + 97512 99584 -chrXV 99676 101264 HC_gene_7898 12 + 99676 101264 -chrXV 101480 101764 HC_gene_7899 21 + 101480 101764 -chrXV 102886 103350 HC_gene_7900 19 + 102886 103350 -chrXV 104295 106383 HC_gene_7901 16 + 104295 106383 -chrXV 106428 108286 HC_gene_7902 49 + 106428 108286 -chrXV 109162 110165 HC_gene_7903 40 + 109162 110165 -chrXV 110239 110876 HC_gene_7904 1593 + 110239 110876 -chrXV 112043 113499 HC_gene_7905 20 + 112043 113499 -chrXV 115107 115734 LC_gene_7906 1 + 115107 115734 -chrXV 116381 116928 LC_gene_7907 1 + 116381 116928 -chrXV 117689 118085 MC_gene_7908 1 + 117689 118085 -chrXV 117984 123588 MC_gene_7909 1 + 117984 123588 -chrXV 120108 123607 MC_gene_7910 1 + 120108 123607 -chrXV 123829 125995 HC_gene_7911 90 + 123829 125995 -chrXV 128068 128473 LC_gene_7912 1 + 128068 128473 -chrXV 129017 132588 HC_gene_7913 5 + 129017 132588 -chrXV 136032 136487 HC_gene_7914 15 + 136032 136487 -chrXV 137354 138092 MC_gene_7915 1 + 137354 138092 -chrXV 142791 144090 HC_gene_7916 81 + 142791 144090 -chrXV 144161 145288 HC_gene_7917 188 + 144161 145288 -chrXV 147369 150376 HC_gene_7918 11 + 147369 150376 -chrXV 150926 151894 LC_gene_7919 1 + 150926 151894 -chrXV 153363 153831 LC_gene_7920 1 + 153363 153831 -chrXV 154909 155128 MC_gene_7921 1 + 154909 155128 -chrXV 159115 159582 HC_gene_7922 144 + 159115 159582 -chrXV 161455 162424 MC_gene_7923 1 + 161455 162424 -chrXV 163306 165479 MC_gene_7924 1 + 163306 165479 -chrXV 165614 167070 HC_gene_7925 10 + 165614 167070 -chrXV 168417 170081 HC_gene_7926 51 + 168417 170081 -chrXV 170324 170604 LC_gene_7927 1 + 170324 170604 -chrXV 173151 180391 HC_gene_7928 1 + 173151 180391 -chrXV 181666 185296 HC_gene_7929 3 + 181666 185296 -chrXV 185403 185781 HC_gene_7930 672 + 185403 185781 -chrXV 187000 189678 HC_gene_7931 14 + 187000 189678 -chrXV 193215 193657 LC_gene_7932 1 + 193215 193657 -chrXV 194946 196419 HC_gene_7933 18 + 194946 196419 -chrXV 196507 197107 HC_gene_7934 120 + 196507 197107 -chrXV 198923 201098 HC_gene_7935 28 + 198923 201098 -chrXV 202052 202714 MC_gene_7936 1 + 202052 202714 -chrXV 202712 204568 LC_gene_7937 1 + 202712 204568 -chrXV 204684 205162 LC_gene_7938 1 + 204684 205162 -chrXV 206120 206371 LC_gene_7939 1 + 206120 206371 -chrXV 206946 207517 LC_gene_7940 1 + 206946 207517 -chrXV 208230 209457 LC_gene_7941 1 + 208230 209457 -chrXV 212209 213899 HC_gene_7942 164 + 212209 213899 -chrXV 216623 217152 MC_gene_7943 1 + 216623 217152 -chrXV 217156 218696 HC_gene_7944 164 + 217156 218696 -chrXV 219137 220616 HC_gene_7945 939 + 219137 220616 -chrXV 220738 223050 HC_gene_7946 45 + 220738 223050 -chrXV 223187 224353 HC_gene_7947 51 + 223187 224353 -chrXV 225675 226565 MC_gene_7948 1 + 225675 226565 -chrXV 226809 227491 MC_gene_7949 1 + 226809 227491 -chrXV 227658 228267 MC_gene_7950 1 + 227658 228267 -chrXV 228533 229914 HC_gene_7951 56 + 228533 229914 -chrXV 230074 231428 HC_gene_7952 40 + 230074 231428 -chrXV 232395 233843 HC_gene_7953 1 + 232395 233843 -chrXV 234275 234633 MC_gene_7954 1 + 234275 234633 -chrXV 234748 234917 HC_gene_7955 1 + 234748 234917 -chrXV 236718 238410 HC_gene_7956 24 + 236718 238410 -chrXV 238572 240206 HC_gene_7957 134 + 238572 240206 -chrXV 241704 242856 HC_gene_7958 2 + 241704 242856 -chrXV 243052 246932 HC_gene_7959 12 + 243052 246932 -chrXV 247098 248366 HC_gene_7960 18 + 247098 248366 -chrXV 249764 251131 HC_gene_7961 17 + 249764 251131 -chrXV 252982 253279 LC_gene_7962 1 + 252982 253279 -chrXV 254267 254804 HC_gene_7963 4384 + 254267 254804 -chrXV 255304 256249 HC_gene_7964 275 + 255304 256249 -chrXV 256350 256750 HC_gene_7965 6 + 256350 256750 -chrXV 257540 259181 HC_gene_7966 32 + 257540 259181 -chrXV 259343 259689 HC_gene_7967 14 + 259343 259689 -chrXV 259894 263302 HC_gene_7968 3 + 259894 263302 -chrXV 263415 265255 HC_gene_7969 17 + 263415 265255 -chrXV 265364 266273 HC_gene_7970 30 + 265364 266273 -chrXV 266731 267427 MC_gene_7971 1 + 266731 267427 -chrXV 267826 268208 HC_gene_7972 2 + 267826 268208 -chrXV 267912 269837 HC_gene_7973 231 + 267912 269837 -chrXV 270885 271875 LC_gene_7974 1 + 270885 271875 -chrXV 274893 276979 HC_gene_7975 11 + 274893 276979 -chrXV 277263 277652 MC_gene_7976 1 + 277263 277652 -chrXV 278054 280274 HC_gene_7977 11 + 278054 280274 -chrXV 281660 282328 HC_gene_7978 10 + 281660 282328 -chrXV 286045 288045 HC_gene_7979 84 + 286045 288045 -chrXV 288754 290777 HC_gene_7980 26 + 288754 290777 -chrXV 292440 294788 HC_gene_7981 6 + 292440 294788 -chrXV 296410 298918 HC_gene_7982 1 + 296410 298918 -chrXV 299536 300308 HC_gene_7983 70 + 299536 300308 -chrXV 301098 301325 MC_gene_7984 1 + 301098 301325 -chrXV 303417 307688 HC_gene_7985 74 + 303417 307688 -chrXV 307881 309255 HC_gene_7986 84 + 307881 309255 -chrXV 309478 310006 LC_gene_7987 1 + 309478 310006 -chrXV 310271 311095 HC_gene_7988 52 + 310271 311095 -chrXV 311382 313482 LC_gene_7989 1 + 311382 313482 -chrXV 315275 315851 HC_gene_7990 5 + 315275 315851 -chrXV 316717 321669 HC_gene_7991 57 + 316717 321669 -chrXV 322382 323439 MC_gene_7992 1 + 322382 323439 -chrXV 323203 324216 MC_gene_7993 1 + 323203 324216 -chrXV 324602 326270 HC_gene_7994 38 + 324602 326270 -chrXV 326790 329106 HC_gene_7995 34 + 326790 329106 -chrXV 329375 331475 HC_gene_7996 108 + 329375 331475 -chrXV 331423 333169 HC_gene_7997 23 + 331423 333169 -chrXV 333541 334639 HC_gene_7998 112 + 333541 334639 -chrXV 335342 336453 MC_gene_7999 1 + 335342 336453 -chrXV 336613 337421 MC_gene_8000 1 + 336613 337421 -chrXV 337576 338791 MC_gene_8001 2 + 337576 338791 -chrXV 338916 339467 LC_gene_8002 1 + 338916 339467 -chrXV 342878 345930 HC_gene_8003 10 + 342878 345930 -chrXV 348321 349063 MC_gene_8004 1 + 348321 349063 -chrXV 348704 349202 MC_gene_8005 1 + 348704 349202 -chrXV 349840 353929 HC_gene_8006 3 + 349840 353929 -chrXV 354380 355140 LC_gene_8007 1 + 354380 355140 -chrXV 355848 356350 MC_gene_8008 1 + 355848 356350 -chrXV 356490 357294 HC_gene_8009 17 + 356490 357294 -chrXV 357414 360444 HC_gene_8010 111 + 357414 360444 -chrXV 361378 364005 HC_gene_8011 7 + 361378 364005 -chrXV 364320 366065 HC_gene_8012 2 + 364320 366065 -chrXV 366421 367063 HC_gene_8013 7 + 366421 367063 -chrXV 368022 369208 MC_gene_8014 1 + 368022 369208 -chrXV 369622 370537 HC_gene_8015 13 + 369622 370537 -chrXV 371169 372492 HC_gene_8016 82 + 371169 372492 -chrXV 374420 374835 MC_gene_8017 1 + 374420 374835 -chrXV 375416 376049 MC_gene_8018 1 + 375416 376049 -chrXV 378141 380990 HC_gene_8019 38 + 378141 380990 -chrXV 381001 382912 HC_gene_8020 246 + 381001 382912 -chrXV 385181 386511 HC_gene_8021 6 + 385181 386511 -chrXV 386721 389569 HC_gene_8022 14 + 386721 389569 -chrXV 389187 390103 HC_gene_8023 62 + 389187 390103 -chrXV 389616 391374 HC_gene_8024 1 + 389616 391374 -chrXV 392304 393144 MC_gene_8025 1 + 392304 393144 -chrXV 393714 394189 MC_gene_8026 1 + 393714 394189 -chrXV 396511 397824 LC_gene_8027 1 + 396511 397824 -chrXV 400343 401285 HC_gene_8028 70 + 400343 401285 -chrXV 401530 402739 HC_gene_8029 31 + 401530 402739 -chrXV 405600 406799 HC_gene_8030 138 + 405600 406799 -chrXV 406836 408266 HC_gene_8031 28 + 406836 408266 -chrXV 408371 409711 HC_gene_8032 78 + 408371 409711 -chrXV 410464 412489 HC_gene_8033 74 + 410464 412489 -chrXV 412759 413709 HC_gene_8034 46 + 412759 413709 -chrXV 413830 414481 HC_gene_8035 304 + 413830 414481 -chrXV 417942 418524 MC_gene_8036 1 + 417942 418524 -chrXV 418166 418633 MC_gene_8037 1 + 418166 418633 -chrXV 421886 422238 MC_gene_8038 1 + 421886 422238 -chrXV 422416 424794 HC_gene_8039 3 + 422416 424794 -chrXV 424813 425030 HC_gene_8040 11 + 424813 425030 -chrXV 425455 426123 LC_gene_8041 1 + 425455 426123 -chrXV 426619 427122 MC_gene_8042 1 + 426619 427122 -chrXV 427633 427846 HC_gene_8043 10 + 427633 427846 -chrXV 432117 433456 HC_gene_8044 36 + 432117 433456 -chrXV 435886 436574 HC_gene_8045 2 + 435886 436574 -chrXV 437335 438394 MC_gene_8046 1 + 437335 438394 -chrXV 438643 438913 MC_gene_8047 1 + 438643 438913 -chrXV 440581 441136 LC_gene_8048 1 + 440581 441136 -chrXV 441311 442766 HC_gene_8049 133 + 441311 442766 -chrXV 443459 443935 LC_gene_8050 1 + 443459 443935 -chrXV 444136 444628 HC_gene_8051 19 + 444136 444628 -chrXV 444662 446077 HC_gene_8052 5874 + 444662 446077 -chrXV 445352 447068 HC_gene_8053 1 + 445352 447068 -chrXV 447196 448899 HC_gene_8054 171 + 447196 448899 -chrXV 449223 451705 HC_gene_8055 30 + 449223 451705 -chrXV 453689 455921 HC_gene_8056 22 + 453689 455921 -chrXV 458164 460049 MC_gene_8057 1 + 458164 460049 -chrXV 463085 463951 MC_gene_8058 1 + 463085 463951 -chrXV 464702 466674 HC_gene_8059 16 + 464702 466674 -chrXV 468178 469307 HC_gene_8060 38 + 468178 469307 -chrXV 471859 473439 HC_gene_8061 331 + 471859 473439 -chrXV 474591 475464 HC_gene_8062 2 + 474591 475464 -chrXV 476260 477181 HC_gene_8063 10 + 476260 477181 -chrXV 478219 479342 MC_gene_8064 1 + 478219 479342 -chrXV 479456 481811 HC_gene_8065 26 + 479456 481811 -chrXV 481971 483206 HC_gene_8066 130 + 481971 483206 -chrXV 487633 489853 HC_gene_8067 44 + 487633 489853 -chrXV 489990 490590 LC_gene_8068 1 + 489990 490590 -chrXV 491394 493027 MC_gene_8069 1 + 491394 493027 -chrXV 493079 494928 HC_gene_8070 93 + 493079 494928 -chrXV 494928 497170 HC_gene_8071 18 + 494928 497170 -chrXV 497431 498897 LC_gene_8072 1 + 497431 498897 -chrXV 502695 503663 HC_gene_8073 87 + 502695 503663 -chrXV 504741 505185 HC_gene_8074 4 + 504741 505185 -chrXV 505764 506896 HC_gene_8075 2456 + 505764 506896 -chrXV 507046 507976 MC_gene_8076 1 + 507046 507976 -chrXV 507729 509273 MC_gene_8077 1 + 507729 509273 -chrXV 509470 510464 LC_gene_8078 1 + 509470 510464 -chrXV 511706 513194 HC_gene_8079 212 + 511706 513194 -chrXV 513201 514994 LC_gene_8080 1 + 513201 514994 -chrXV 515168 516393 HC_gene_8081 173 + 515168 516393 -chrXV 517451 520081 HC_gene_8082 44 + 517451 520081 -chrXV 519025 520362 HC_gene_8083 50 + 519025 520362 -chrXV 521073 522693 HC_gene_8084 43 + 521073 522693 -chrXV 522948 525005 HC_gene_8085 109 + 522948 525005 -chrXV 525175 527237 HC_gene_8086 3 + 525175 527237 -chrXV 527769 528777 HC_gene_8087 11 + 527769 528777 -chrXV 528856 530307 HC_gene_8088 28 + 528856 530307 -chrXV 530395 531458 HC_gene_8089 10 + 530395 531458 -chrXV 531434 533845 HC_gene_8090 11 + 531434 533845 -chrXV 533956 537138 HC_gene_8091 24 + 533956 537138 -chrXV 537366 538661 HC_gene_8092 13 + 537366 538661 -chrXV 544968 546471 HC_gene_8093 325 + 544968 546471 -chrXV 546696 548740 HC_gene_8094 32 + 546696 548740 -chrXV 549082 549745 MC_gene_8095 1 + 549082 549745 -chrXV 550032 550265 MC_gene_8096 1 + 550032 550265 -chrXV 550485 552199 HC_gene_8097 94 + 550485 552199 -chrXV 552557 553179 MC_gene_8098 1 + 552557 553179 -chrXV 553164 553816 MC_gene_8099 1 + 553164 553816 -chrXV 556745 557061 MC_gene_8100 1 + 556745 557061 -chrXV 559933 564369 HC_gene_8101 12 + 559933 564369 -chrXV 569796 570424 LC_gene_8102 1 + 569796 570424 -chrXV 570624 572178 MC_gene_8103 4 + 570624 572178 -chrXV 573103 574880 HC_gene_8104 33 + 573103 574880 -chrXV 575058 577945 HC_gene_8105 396 + 575058 577945 -chrXV 578235 578406 HC_gene_8106 1 + 578235 578406 -chrXV 578458 578619 HC_gene_8107 1 + 578458 578619 -chrXV 579061 580164 MC_gene_8108 1 + 579061 580164 -chrXV 580153 581631 HC_gene_8109 556 + 580153 581631 -chrXV 584268 586837 MC_gene_8110 1 + 584268 586837 -chrXV 586647 589747 HC_gene_8111 8 + 586647 589747 -chrXV 592862 594272 HC_gene_8112 242 + 592862 594272 -chrXV 594579 595026 LC_gene_8113 1 + 594579 595026 -chrXV 597220 600766 HC_gene_8114 5 + 597220 600766 -chrXV 602709 603173 LC_gene_8115 1 + 602709 603173 -chrXV 606580 608649 HC_gene_8116 29 + 606580 608649 -chrXV 608786 609306 LC_gene_8117 1 + 608786 609306 -chrXV 611587 611900 LC_gene_8118 1 + 611587 611900 -chrXV 611970 612598 HC_gene_8119 161 + 611970 612598 -chrXV 617179 618111 HC_gene_8120 1 + 617179 618111 -chrXV 618689 624729 HC_gene_8121 1912 + 618689 624729 -chrXV 624677 626645 HC_gene_8122 14 + 624677 626645 -chrXV 628439 629263 LC_gene_8123 1 + 628439 629263 -chrXV 630646 631007 LC_gene_8124 1 + 630646 631007 -chrXV 631359 632144 LC_gene_8125 1 + 631359 632144 -chrXV 632147 633270 HC_gene_8126 69 + 632147 633270 -chrXV 633781 636843 HC_gene_8127 15 + 633781 636843 -chrXV 637024 638851 MC_gene_8128 1 + 637024 638851 -chrXV 639160 639433 MC_gene_8129 1 + 639160 639433 -chrXV 640152 640700 MC_gene_8130 1 + 640152 640700 -chrXV 642702 643556 HC_gene_8131 128 + 642702 643556 -chrXV 644522 647158 HC_gene_8132 28 + 644522 647158 -chrXV 649273 651931 HC_gene_8133 189 + 649273 651931 -chrXV 654164 656257 HC_gene_8134 1 + 654164 656257 -chrXV 657235 658437 HC_gene_8135 47 + 657235 658437 -chrXV 658631 659790 HC_gene_8136 53 + 658631 659790 -chrXV 662288 663715 HC_gene_8137 111 + 662288 663715 -chrXV 664670 665587 MC_gene_8138 1 + 664670 665587 -chrXV 666495 667603 LC_gene_8139 1 + 666495 667603 -chrXV 667869 670633 HC_gene_8140 7 + 667869 670633 -chrXV 672614 673730 MC_gene_8141 1 + 672614 673730 -chrXV 675435 675910 HC_gene_8142 25 + 675435 675910 -chrXV 677089 677973 HC_gene_8143 7 + 677089 677973 -chrXV 679306 681407 HC_gene_8144 420 + 679306 681407 -chrXV 681485 682228 HC_gene_8145 13 + 681485 682228 -chrXV 682428 683719 HC_gene_8146 4 + 682428 683719 -chrXV 683959 685565 HC_gene_8147 293 + 683959 685565 -chrXV 685680 689311 HC_gene_8148 8 + 685680 689311 -chrXV 689588 692190 HC_gene_8149 108 + 689588 692190 -chrXV 694437 698188 HC_gene_8150 13 + 694437 698188 -chrXV 701219 701612 LC_gene_8151 1 + 701219 701612 -chrXV 701781 702948 HC_gene_8152 6 + 701781 702948 -chrXV 703668 704440 MC_gene_8153 1 + 703668 704440 -chrXV 709248 710122 MC_gene_8154 1 + 709248 710122 -chrXV 710388 711691 HC_gene_8155 17 + 710388 711691 -chrXV 712108 712763 HC_gene_8156 1 + 712108 712763 -chrXV 712794 715558 HC_gene_8157 20 + 712794 715558 -chrXV 717069 718536 HC_gene_8158 122 + 717069 718536 -chrXV 720216 720548 MC_gene_8159 1 + 720216 720548 -chrXV 721921 722745 HC_gene_8160 659 + 721921 722745 -chrXV 722890 725602 HC_gene_8161 827 + 722890 725602 -chrXV 727481 729860 HC_gene_8162 130 + 727481 729860 -chrXV 733757 736306 HC_gene_8163 15 + 733757 736306 -chrXV 738279 738830 HC_gene_8164 421 + 738279 738830 -chrXV 742772 745590 HC_gene_8165 74 + 742772 745590 -chrXV 749195 752139 HC_gene_8166 47 + 749195 752139 -chrXV 755319 756390 HC_gene_8167 116 + 755319 756390 -chrXV 757873 758346 HC_gene_8168 130 + 757873 758346 -chrXV 757879 759289 HC_gene_8169 82 + 757879 759289 -chrXV 759738 760863 HC_gene_8170 24 + 759738 760863 -chrXV 761493 761802 LC_gene_8171 1 + 761493 761802 -chrXV 761912 762823 LC_gene_8172 1 + 761912 762823 -chrXV 762823 766729 HC_gene_8173 8 + 762823 766729 -chrXV 768360 770085 HC_gene_8174 39 + 768360 770085 -chrXV 770015 770549 HC_gene_8175 7 + 770015 770549 -chrXV 770747 772304 HC_gene_8176 595 + 770747 772304 -chrXV 772458 774327 HC_gene_8177 38 + 772458 774327 -chrXV 774467 775419 HC_gene_8178 312 + 774467 775419 -chrXV 775666 778317 HC_gene_8179 10 + 775666 778317 -chrXV 780104 780599 HC_gene_8180 124 + 780104 780599 -chrXV 780890 781612 HC_gene_8181 79 + 780890 781612 -chrXV 781892 783335 MC_gene_8182 1 + 781892 783335 -chrXV 783668 784757 HC_gene_8183 41 + 783668 784757 -chrXV 784709 786935 HC_gene_8184 159 + 784709 786935 -chrXV 787160 788897 HC_gene_8185 63 + 787160 788897 -chrXV 789396 790925 LC_gene_8186 1 + 789396 790925 -chrXV 792492 794045 HC_gene_8187 32 + 792492 794045 -chrXV 795163 795801 LC_gene_8188 1 + 795163 795801 -chrXV 797291 798695 HC_gene_8189 1504 + 797291 798695 -chrXV 802524 803008 LC_gene_8190 1 + 802524 803008 -chrXV 803633 804305 HC_gene_8191 152 + 803633 804305 -chrXV 804356 805104 HC_gene_8192 195 + 804356 805104 -chrXV 810972 811561 HC_gene_8193 210 + 810972 811561 -chrXV 811661 813395 HC_gene_8194 24 + 811661 813395 -chrXV 813931 816186 HC_gene_8195 85 + 813931 816186 -chrXV 817228 818449 HC_gene_8196 83 + 817228 818449 -chrXV 818641 821034 HC_gene_8197 334 + 818641 821034 -chrXV 820996 822465 HC_gene_8198 18 + 820996 822465 -chrXV 824540 824915 MC_gene_8199 1 + 824540 824915 -chrXV 825270 825443 MC_gene_8200 1 + 825270 825443 -chrXV 826307 828040 HC_gene_8201 7 + 826307 828040 -chrXV 831136 832293 LC_gene_8202 1 + 831136 832293 -chrXV 832331 832587 HC_gene_8203 33 + 832331 832587 -chrXV 832788 834444 HC_gene_8204 86 + 832788 834444 -chrXV 837082 837694 HC_gene_8205 24 + 837082 837694 -chrXV 837672 839460 HC_gene_8206 51 + 837672 839460 -chrXV 841271 841984 HC_gene_8207 415 + 841271 841984 -chrXV 842402 842690 HC_gene_8208 9 + 842402 842690 -chrXV 842810 843798 HC_gene_8209 23 + 842810 843798 -chrXV 843802 845010 MC_gene_8210 1 + 843802 845010 -chrXV 844899 845131 MC_gene_8211 1 + 844899 845131 -chrXV 844962 845760 MC_gene_8212 1 + 844962 845760 -chrXV 847387 848313 HC_gene_8213 229 + 847387 848313 -chrXV 848429 849600 HC_gene_8214 7 + 848429 849600 -chrXV 849624 850227 HC_gene_8215 628 + 849624 850227 -chrXV 850255 850932 HC_gene_8216 274 + 850255 850932 -chrXV 853363 854201 HC_gene_8217 24 + 853363 854201 -chrXV 854498 855040 HC_gene_8218 218 + 854498 855040 -chrXV 861002 865672 HC_gene_8219 4 + 861002 865672 -chrXV 866416 866674 MC_gene_8220 1 + 866416 866674 -chrXV 867069 868119 HC_gene_8221 3908 + 867069 868119 -chrXV 868293 869101 HC_gene_8222 224 + 868293 869101 -chrXV 869140 870127 HC_gene_8223 37 + 869140 870127 -chrXV 870103 874255 HC_gene_8224 10 + 870103 874255 -chrXV 874424 874998 HC_gene_8225 3 + 874424 874998 -chrXV 875041 877118 LC_gene_8226 1 + 875041 877118 -chrXV 878069 880810 HC_gene_8227 25 + 878069 880810 -chrXV 880986 882725 HC_gene_8228 13 + 880986 882725 -chrXV 882777 884364 HC_gene_8229 355 + 882777 884364 -chrXV 884410 885580 HC_gene_8230 1 + 884410 885580 -chrXV 886221 887966 HC_gene_8231 4 + 886221 887966 -chrXV 888955 891661 HC_gene_8232 61 + 888955 891661 -chrXV 891937 892698 MC_gene_8233 1 + 891937 892698 -chrXV 892787 894229 LC_gene_8234 1 + 892787 894229 -chrXV 894741 895608 LC_gene_8235 1 + 894741 895608 -chrXV 898644 898941 HC_gene_8236 8 + 898644 898941 -chrXV 903981 904468 MC_gene_8237 1 + 903981 904468 -chrXV 904672 906212 HC_gene_8238 94 + 904672 906212 -chrXV 907959 908347 MC_gene_8239 1 + 907959 908347 -chrXV 909312 911786 HC_gene_8240 89 + 909312 911786 -chrXV 912346 913599 HC_gene_8241 28 + 912346 913599 -chrXV 912783 914068 HC_gene_8242 7 + 912783 914068 -chrXV 915950 918324 HC_gene_8243 19 + 915950 918324 -chrXV 923075 923185 MC_gene_8244 1 + 923075 923185 -chrXV 923300 923976 LC_gene_8245 1 + 923300 923976 -chrXV 925539 930816 HC_gene_8246 112 + 925539 930816 -chrXV 931227 931730 MC_gene_8247 1 + 931227 931730 -chrXV 932310 936725 MC_gene_8248 4 + 932310 936725 -chrXV 937348 939661 LC_gene_8249 1 + 937348 939661 -chrXV 943623 944427 HC_gene_8250 739 + 943623 944427 -chrXV 944563 946176 HC_gene_8251 5 + 944563 946176 -chrXV 949752 953992 HC_gene_8252 1 + 949752 953992 -chrXV 954210 956903 HC_gene_8253 19 + 954210 956903 -chrXV 956833 958243 HC_gene_8254 20 + 956833 958243 -chrXV 958392 960283 MC_gene_8255 1 + 958392 960283 -chrXV 960878 966605 HC_gene_8256 216 + 960878 966605 -chrXV 968093 968800 LC_gene_8257 1 + 968093 968800 -chrXV 968807 969295 HC_gene_8258 8 + 968807 969295 -chrXV 969139 969601 HC_gene_8259 2 + 969139 969601 -chrXV 969222 970616 HC_gene_8260 38 + 969222 970616 -chrXV 973757 976247 HC_gene_8261 2 + 973757 976247 -chrXV 976978 977309 MC_gene_8262 1 + 976978 977309 -chrXV 978486 979741 HC_gene_8263 2 + 978486 979741 -chrXV 979713 980094 HC_gene_8264 2 + 979713 980094 -chrXV 980871 981122 HC_gene_8265 2 + 980871 981122 -chrXV 981663 984941 HC_gene_8266 11 + 981663 984941 -chrXV 988112 989025 MC_gene_8267 1 + 988112 989025 -chrXV 989639 992996 HC_gene_8268 10 + 989639 992996 -chrXV 995071 996928 MC_gene_8269 1 + 995071 996928 -chrXV 997136 998438 HC_gene_8270 20 + 997136 998438 -chrXV 1001163 1002089 LC_gene_8271 1 + 1001163 1002089 -chrXV 1003526 1003913 MC_gene_8272 1 + 1003526 1003913 -chrXV 1003957 1005025 HC_gene_8273 60 + 1003957 1005025 -chrXV 1004644 1006894 HC_gene_8274 73 + 1004644 1006894 -chrXV 1007193 1009235 HC_gene_8275 101 + 1007193 1009235 -chrXV 1009970 1011202 HC_gene_8276 27 + 1009970 1011202 -chrXV 1011068 1013069 HC_gene_8277 42 + 1011068 1013069 -chrXV 1019020 1020008 HC_gene_8278 4 + 1019020 1020008 -chrXV 1023697 1024544 HC_gene_8279 2 + 1023697 1024544 -chrXV 1025093 1025797 LC_gene_8280 1 + 1025093 1025797 -chrXV 1025980 1026759 HC_gene_8281 117 + 1025980 1026759 -chrXV 1026810 1028160 HC_gene_8282 22 + 1026810 1028160 -chrXV 1033862 1034554 MC_gene_8283 1 + 1033862 1034554 -chrXV 1036766 1037659 HC_gene_8284 3 + 1036766 1037659 -chrXV 1037779 1039493 MC_gene_8285 1 + 1037779 1039493 -chrXV 1039790 1041468 HC_gene_8286 117 + 1039790 1041468 -chrXV 1044719 1046116 HC_gene_8287 6 + 1044719 1046116 -chrXV 1046191 1048147 HC_gene_8288 15 + 1046191 1048147 -chrXV 1050071 1051130 HC_gene_8289 4 + 1050071 1051130 -chrXV 1051081 1053012 HC_gene_8290 4 + 1051081 1053012 -chrXV 1053229 1053708 LC_gene_8291 1 + 1053229 1053708 -chrXV 1054833 1057799 HC_gene_8292 5 + 1054833 1057799 -chrXV 1058090 1058897 MC_gene_8293 1 + 1058090 1058897 -chrXV 1059212 1060090 HC_gene_8294 378 + 1059212 1060090 -chrXV 1061469 1064688 HC_gene_8295 4 + 1061469 1064688 -chrXV 1064607 1066456 HC_gene_8296 56 + 1064607 1066456 -chrXV 1066823 1068762 HC_gene_8297 1 + 1066823 1068762 -chrXV 1075103 1076309 MC_gene_8298 1 + 1075103 1076309 -chrXV 1076746 1077956 MC_gene_8299 1 + 1076746 1077956 -chrXV 1076804 1078387 MC_gene_8300 1 + 1076804 1078387 -chrXV 1078275 1080132 LC_gene_8301 1 + 1078275 1080132 -chrXV 1568 2180 MC_gene_8302 1 - 1568 2180 -chrXV 2933 3447 MC_gene_8303 1 - 2933 3447 -chrXV 3042 3873 MC_gene_8304 1 - 3042 3873 -chrXV 3918 5331 HC_gene_8305 3 - 3918 5331 -chrXV 5415 6889 HC_gene_8306 33 - 5415 6889 -chrXV 8292 8632 HC_gene_8307 5 - 8292 8632 -chrXV 8945 9688 MC_gene_8308 1 - 8945 9688 -chrXV 13306 13965 LC_gene_8309 1 - 13306 13965 -chrXV 14579 15595 HC_gene_8310 27 - 14579 15595 -chrXV 15419 16618 HC_gene_8311 3 - 15419 16618 -chrXV 16717 18027 HC_gene_8312 56 - 16717 18027 -chrXV 19153 21334 HC_gene_8313 105 - 19153 21334 -chrXV 22315 23045 MC_gene_8314 1 - 22315 23045 -chrXV 22426 24682 MC_gene_8315 1 - 22426 24682 -chrXV 24345 26955 MC_gene_8316 2 - 24345 26955 -chrXV 27018 27576 MC_gene_8317 1 - 27018 27576 -chrXV 28572 29701 MC_gene_8318 2 - 28572 29701 -chrXV 28578 31684 MC_gene_8319 1 - 28578 31684 -chrXV 34508 35644 HC_gene_8320 2 - 34508 35644 -chrXV 36748 38613 HC_gene_8321 1 - 36748 38613 -chrXV 38857 40216 HC_gene_8322 6 - 38857 40216 -chrXV 40680 43116 MC_gene_8323 1 - 40680 43116 -chrXV 42495 43339 MC_gene_8324 1 - 42495 43339 -chrXV 43432 44714 MC_gene_8325 2 - 43432 44714 -chrXV 45647 47618 HC_gene_8326 13 - 45647 47618 -chrXV 47785 48665 HC_gene_8327 91 - 47785 48665 -chrXV 49436 52839 HC_gene_8328 98 - 49436 52839 -chrXV 52970 54427 LC_gene_8329 1 - 52970 54427 -chrXV 54521 55148 HC_gene_8330 511 - 54521 55148 -chrXV 57851 60096 LC_gene_8331 1 - 57851 60096 -chrXV 60293 61084 HC_gene_8332 879 - 60293 61084 -chrXV 61279 65380 HC_gene_8333 3 - 61279 65380 -chrXV 67090 68976 HC_gene_8334 209 - 67090 68976 -chrXV 69212 70056 HC_gene_8335 23 - 69212 70056 -chrXV 71543 72302 HC_gene_8336 4 - 71543 72302 -chrXV 73444 73897 HC_gene_8337 3 - 73444 73897 -chrXV 77262 77762 MC_gene_8338 1 - 77262 77762 -chrXV 78143 78407 HC_gene_8339 15 - 78143 78407 -chrXV 79490 79812 MC_gene_8340 1 - 79490 79812 -chrXV 81377 83098 MC_gene_8341 5 - 81377 83098 -chrXV 83727 84395 LC_gene_8342 1 - 83727 84395 -chrXV 85202 86785 HC_gene_8343 89 - 85202 86785 -chrXV 89491 91669 HC_gene_8344 29 - 89491 91669 -chrXV 91938 92871 HC_gene_8345 1982 - 91938 92871 -chrXV 93303 94420 HC_gene_8346 4774 - 93303 94420 -chrXV 94706 96430 HC_gene_8347 93 - 94706 96430 -chrXV 96597 97383 MC_gene_8348 1 - 96597 97383 -chrXV 99888 100581 LC_gene_8349 1 - 99888 100581 -chrXV 100818 101432 HC_gene_8350 10 - 100818 101432 -chrXV 103274 103943 HC_gene_8351 10 - 103274 103943 -chrXV 104813 106052 LC_gene_8352 1 - 104813 106052 -chrXV 106278 106716 MC_gene_8353 1 - 106278 106716 -chrXV 108083 108946 HC_gene_8354 192 - 108083 108946 -chrXV 111208 111891 HC_gene_8355 89 - 111208 111891 -chrXV 114003 116085 HC_gene_8356 20 - 114003 116085 -chrXV 115930 117518 MC_gene_8357 1 - 115930 117518 -chrXV 115990 117976 MC_gene_8358 1 - 115990 117976 -chrXV 122866 123836 MC_gene_8359 1 - 122866 123836 -chrXV 125886 126708 HC_gene_8360 69 - 125886 126708 -chrXV 126905 128318 HC_gene_8361 79 - 126905 128318 -chrXV 130676 131618 LC_gene_8362 1 - 130676 131618 -chrXV 132460 135903 HC_gene_8363 35 - 132460 135903 -chrXV 136416 137851 HC_gene_8364 287 - 136416 137851 -chrXV 137987 139075 HC_gene_8365 44 - 137987 139075 -chrXV 139158 141381 HC_gene_8366 4 - 139158 141381 -chrXV 141352 142613 HC_gene_8367 38 - 141352 142613 -chrXV 142598 143985 LC_gene_8368 1 - 142598 143985 -chrXV 145074 146154 LC_gene_8369 1 - 145074 146154 -chrXV 150295 153524 HC_gene_8370 7 - 150295 153524 -chrXV 153559 154768 HC_gene_8371 77 - 153559 154768 -chrXV 154993 158913 HC_gene_8372 36 - 154993 158913 -chrXV 159454 160633 HC_gene_8373 17982 - 159454 160633 -chrXV 167569 167860 HC_gene_8374 4 - 167569 167860 -chrXV 167968 168893 LC_gene_8375 1 - 167968 168893 -chrXV 169449 170001 MC_gene_8376 1 - 169449 170001 -chrXV 169958 170937 MC_gene_8377 1 - 169958 170937 -chrXV 175420 175837 LC_gene_8378 1 - 175420 175837 -chrXV 180280 181472 HC_gene_8379 68 - 180280 181472 -chrXV 185106 185534 LC_gene_8380 1 - 185106 185534 -chrXV 185584 186732 HC_gene_8381 308 - 185584 186732 -chrXV 189211 193626 HC_gene_8382 6 - 189211 193626 -chrXV 193778 194834 HC_gene_8383 33 - 193778 194834 -chrXV 196960 198754 HC_gene_8384 39 - 196960 198754 -chrXV 200112 202569 HC_gene_8385 74 - 200112 202569 -chrXV 202628 204523 HC_gene_8386 24 - 202628 204523 -chrXV 204660 205918 HC_gene_8387 19 - 204660 205918 -chrXV 206001 207198 HC_gene_8388 182 - 206001 207198 -chrXV 207338 210339 HC_gene_8389 4 - 207338 210339 -chrXV 210439 212006 HC_gene_8390 106 - 210439 212006 -chrXV 213731 216982 HC_gene_8391 29 - 213731 216982 -chrXV 217017 218457 LC_gene_8392 1 - 217017 218457 -chrXV 218506 218687 MC_gene_8393 1 - 218506 218687 -chrXV 219139 220559 HC_gene_8394 6 - 219139 220559 -chrXV 224320 226123 HC_gene_8395 11 - 224320 226123 -chrXV 226077 226490 HC_gene_8396 4 - 226077 226490 -chrXV 227092 227628 LC_gene_8397 1 - 227092 227628 -chrXV 227869 228406 LC_gene_8398 1 - 227869 228406 -chrXV 231286 231925 HC_gene_8399 261 - 231286 231925 -chrXV 231848 233651 HC_gene_8400 70 - 231848 233651 -chrXV 233746 234114 MC_gene_8401 1 - 233746 234114 -chrXV 234762 237591 LC_gene_8402 1 - 234762 237591 -chrXV 240061 241359 HC_gene_8403 59 - 240061 241359 -chrXV 241507 242756 MC_gene_8404 1 - 241507 242756 -chrXV 247467 247855 LC_gene_8405 1 - 247467 247855 -chrXV 248284 249618 HC_gene_8406 29 - 248284 249618 -chrXV 250170 250579 MC_gene_8407 1 - 250170 250579 -chrXV 251106 252694 HC_gene_8408 88 - 251106 252694 -chrXV 253023 253615 HC_gene_8409 5729 - 253023 253615 -chrXV 254706 255086 HC_gene_8410 30 - 254706 255086 -chrXV 256076 256583 LC_gene_8411 1 - 256076 256583 -chrXV 259015 259645 MC_gene_8412 1 - 259015 259645 -chrXV 263765 264347 LC_gene_8413 1 - 263765 264347 -chrXV 266120 267582 HC_gene_8414 20 - 266120 267582 -chrXV 267777 267924 MC_gene_8415 1 - 267777 267924 -chrXV 269715 271588 HC_gene_8416 13 - 269715 271588 -chrXV 271804 273728 HC_gene_8417 88 - 271804 273728 -chrXV 273918 274370 HC_gene_8418 185 - 273918 274370 -chrXV 277743 278149 LC_gene_8419 1 - 277743 278149 -chrXV 280166 281529 HC_gene_8420 114 - 280166 281529 -chrXV 282301 285480 HC_gene_8421 31 - 282301 285480 -chrXV 285606 286070 LC_gene_8422 1 - 285606 286070 -chrXV 290694 292123 HC_gene_8423 75 - 290694 292123 -chrXV 292586 294150 LC_gene_8424 1 - 292586 294150 -chrXV 294706 296143 HC_gene_8425 110 - 294706 296143 -chrXV 296388 296758 MC_gene_8426 1 - 296388 296758 -chrXV 297748 299145 LC_gene_8427 1 - 297748 299145 -chrXV 299406 300231 MC_gene_8428 1 - 299406 300231 -chrXV 300148 300461 MC_gene_8429 1 - 300148 300461 -chrXV 301259 303194 HC_gene_8430 15 - 301259 303194 -chrXV 303416 304361 HC_gene_8431 280 - 303416 304361 -chrXV 307285 307675 MC_gene_8432 1 - 307285 307675 -chrXV 309067 310335 HC_gene_8433 12 - 309067 310335 -chrXV 310827 312453 HC_gene_8434 54 - 310827 312453 -chrXV 312945 315514 HC_gene_8435 50 - 312945 315514 -chrXV 315760 316462 HC_gene_8436 333 - 315760 316462 -chrXV 321753 323003 HC_gene_8437 33 - 321753 323003 -chrXV 323342 324637 HC_gene_8438 151 - 323342 324637 -chrXV 324645 325699 MC_gene_8439 1 - 324645 325699 -chrXV 326165 326455 HC_gene_8440 68 - 326165 326455 -chrXV 328939 329147 MC_gene_8441 1 - 328939 329147 -chrXV 331148 331624 HC_gene_8442 4 - 331148 331624 -chrXV 332278 333353 HC_gene_8443 2 - 332278 333353 -chrXV 334397 336426 HC_gene_8444 16 - 334397 336426 -chrXV 337590 340032 HC_gene_8445 1117 - 337590 340032 -chrXV 340961 342632 HC_gene_8446 93 - 340961 342632 -chrXV 342998 343375 MC_gene_8447 1 - 342998 343375 -chrXV 346126 348141 HC_gene_8448 23 - 346126 348141 -chrXV 348984 349630 HC_gene_8449 38 - 348984 349630 -chrXV 353855 354108 MC_gene_8450 1 - 353855 354108 -chrXV 355270 355808 MC_gene_8451 1 - 355270 355808 -chrXV 356144 357204 HC_gene_8452 19 - 356144 357204 -chrXV 360182 361139 HC_gene_8453 113 - 360182 361139 -chrXV 363455 364002 MC_gene_8454 1 - 363455 364002 -chrXV 363887 366189 MC_gene_8455 1 - 363887 366189 -chrXV 365921 367493 MC_gene_8456 1 - 365921 367493 -chrXV 367007 367660 MC_gene_8457 1 - 367007 367660 -chrXV 368713 369468 HC_gene_8458 7 - 368713 369468 -chrXV 370407 370883 HC_gene_8459 1339 - 370407 370883 -chrXV 371101 371354 HC_gene_8460 33 - 371101 371354 -chrXV 371624 372058 MC_gene_8461 1 - 371624 372058 -chrXV 372251 373464 HC_gene_8462 252 - 372251 373464 -chrXV 373585 375888 HC_gene_8463 9 - 373585 375888 -chrXV 375957 377874 HC_gene_8464 15 - 375957 377874 -chrXV 378073 379031 LC_gene_8465 1 - 378073 379031 -chrXV 380190 380707 MC_gene_8466 1 - 380190 380707 -chrXV 383205 384509 HC_gene_8467 17 - 383205 384509 -chrXV 385727 386375 MC_gene_8468 1 - 385727 386375 -chrXV 389522 391376 MC_gene_8469 2 - 389522 391376 -chrXV 392346 394639 HC_gene_8470 11 - 392346 394639 -chrXV 394729 397341 HC_gene_8471 13 - 394729 397341 -chrXV 397239 400106 HC_gene_8472 11 - 397239 400106 -chrXV 400143 401740 HC_gene_8473 7 - 400143 401740 -chrXV 402662 405440 HC_gene_8474 16 - 402662 405440 -chrXV 406690 408134 HC_gene_8475 129 - 406690 408134 -chrXV 409605 410130 HC_gene_8476 37 - 409605 410130 -chrXV 412154 412486 MC_gene_8477 1 - 412154 412486 -chrXV 413554 414064 MC_gene_8478 1 - 413554 414064 -chrXV 414377 415940 HC_gene_8479 181 - 414377 415940 -chrXV 416175 417821 HC_gene_8480 66 - 416175 417821 -chrXV 418396 421709 HC_gene_8481 36 - 418396 421709 -chrXV 422472 423918 HC_gene_8482 79 - 422472 423918 -chrXV 424003 424549 MC_gene_8483 1 - 424003 424549 -chrXV 424673 426305 HC_gene_8484 232 - 424673 426305 -chrXV 426336 427350 HC_gene_8485 380 - 426336 427350 -chrXV 427752 429999 HC_gene_8486 34 - 427752 429999 -chrXV 430187 431704 HC_gene_8487 121 - 430187 431704 -chrXV 432606 433246 LC_gene_8488 1 - 432606 433246 -chrXV 433355 436486 HC_gene_8489 11 - 433355 436486 -chrXV 436878 437198 HC_gene_8490 2 - 436878 437198 -chrXV 438846 441191 HC_gene_8491 37 - 438846 441191 -chrXV 442645 443713 HC_gene_8492 43 - 442645 443713 -chrXV 445993 446788 HC_gene_8493 15 - 445993 446788 -chrXV 446872 448318 HC_gene_8494 2 - 446872 448318 -chrXV 448501 448778 LC_gene_8495 1 - 448501 448778 -chrXV 448794 449835 MC_gene_8496 1 - 448794 449835 -chrXV 451649 453504 HC_gene_8497 95 - 451649 453504 -chrXV 453666 454956 LC_gene_8498 1 - 453666 454956 -chrXV 455837 457965 HC_gene_8499 12 - 455837 457965 -chrXV 458736 461746 HC_gene_8500 25 - 458736 461746 -chrXV 462199 463394 LC_gene_8501 1 - 462199 463394 -chrXV 463839 464185 MC_gene_8502 1 - 463839 464185 -chrXV 464692 466341 LC_gene_8503 1 - 464692 466341 -chrXV 466458 467622 HC_gene_8504 62 - 466458 467622 -chrXV 469283 471658 HC_gene_8505 8 - 469283 471658 -chrXV 473323 474452 HC_gene_8506 62 - 473323 474452 -chrXV 476851 479243 HC_gene_8507 13 - 476851 479243 -chrXV 479324 479816 MC_gene_8508 1 - 479324 479816 -chrXV 481728 483149 LC_gene_8509 1 - 481728 483149 -chrXV 483114 486977 HC_gene_8510 63 - 483114 486977 -chrXV 489934 490851 HC_gene_8511 327 - 489934 490851 -chrXV 491038 492967 HC_gene_8512 17 - 491038 492967 -chrXV 493587 494465 MC_gene_8513 2 - 493587 494465 -chrXV 494267 495660 MC_gene_8514 1 - 494267 495660 -chrXV 494915 497102 MC_gene_8515 1 - 494915 497102 -chrXV 497430 501031 LC_gene_8516 1 - 497430 501031 -chrXV 501409 502482 HC_gene_8517 4 - 501409 502482 -chrXV 502852 504399 HC_gene_8518 244 - 502852 504399 -chrXV 504807 505420 LC_gene_8519 1 - 504807 505420 -chrXV 505684 506304 LC_gene_8520 1 - 505684 506304 -chrXV 506747 507540 HC_gene_8521 90 - 506747 507540 -chrXV 507724 508498 HC_gene_8522 8 - 507724 508498 -chrXV 507804 511238 HC_gene_8523 8 - 507804 511238 -chrXV 513014 514316 HC_gene_8524 1 - 513014 514316 -chrXV 514939 515645 LC_gene_8525 1 - 514939 515645 -chrXV 516358 517423 HC_gene_8526 355 - 516358 517423 -chrXV 519623 520428 MC_gene_8527 1 - 519623 520428 -chrXV 521257 522650 MC_gene_8528 3 - 521257 522650 -chrXV 524366 524842 LC_gene_8529 1 - 524366 524842 -chrXV 528771 529313 MC_gene_8530 1 - 528771 529313 -chrXV 529941 530282 LC_gene_8531 1 - 529941 530282 -chrXV 530599 531249 MC_gene_8532 1 - 530599 531249 -chrXV 535668 537146 MC_gene_8533 1 - 535668 537146 -chrXV 538289 539517 HC_gene_8534 68 - 538289 539517 -chrXV 539623 541288 MC_gene_8535 1 - 539623 541288 -chrXV 541731 543970 HC_gene_8536 1 - 541731 543970 -chrXV 542416 544360 HC_gene_8537 2 - 542416 544360 -chrXV 547604 550611 HC_gene_8538 62 - 547604 550611 -chrXV 552110 552905 HC_gene_8539 1228 - 552110 552905 -chrXV 552968 554794 HC_gene_8540 204 - 552968 554794 -chrXV 554742 558750 HC_gene_8541 50 - 554742 558750 -chrXV 558784 559776 HC_gene_8542 61 - 558784 559776 -chrXV 559837 560701 HC_gene_8543 60 - 559837 560701 -chrXV 564397 566209 HC_gene_8544 145 - 564397 566209 -chrXV 566677 569637 HC_gene_8545 7 - 566677 569637 -chrXV 569818 570866 HC_gene_8546 102 - 569818 570866 -chrXV 572124 572920 HC_gene_8547 43 - 572124 572920 -chrXV 574368 574782 LC_gene_8548 1 - 574368 574782 -chrXV 577432 577944 MC_gene_8549 1 - 577432 577944 -chrXV 578525 579029 MC_gene_8550 1 - 578525 579029 -chrXV 579069 579698 HC_gene_8551 1 - 579069 579698 -chrXV 581684 586390 HC_gene_8552 58 - 581684 586390 -chrXV 589648 592609 HC_gene_8553 10 - 589648 592609 -chrXV 594216 594405 MC_gene_8554 1 - 594216 594405 -chrXV 594681 595619 MC_gene_8555 2 - 594681 595619 -chrXV 600871 602417 HC_gene_8556 48 - 600871 602417 -chrXV 602548 605094 HC_gene_8557 9 - 602548 605094 -chrXV 605261 606193 HC_gene_8558 287 - 605261 606193 -chrXV 606359 608540 LC_gene_8559 1 - 606359 608540 -chrXV 608561 609220 HC_gene_8560 104 - 608561 609220 -chrXV 609420 611433 HC_gene_8561 15 - 609420 611433 -chrXV 612487 616950 HC_gene_8562 112 - 612487 616950 -chrXV 617133 619060 HC_gene_8563 140 - 617133 619060 -chrXV 626539 628002 HC_gene_8564 60 - 626539 628002 -chrXV 628105 630618 HC_gene_8565 7 - 628105 630618 -chrXV 630826 631817 HC_gene_8566 478 - 630826 631817 -chrXV 632466 633611 HC_gene_8567 236 - 632466 633611 -chrXV 634025 636767 LC_gene_8568 1 - 634025 636767 -chrXV 636816 638623 HC_gene_8569 7 - 636816 638623 -chrXV 638698 642181 HC_gene_8570 1 - 638698 642181 -chrXV 639405 642500 HC_gene_8571 6 - 639405 642500 -chrXV 643175 644353 HC_gene_8572 188 - 643175 644353 -chrXV 646980 648541 HC_gene_8573 24 - 646980 648541 -chrXV 648625 649020 HC_gene_8574 5176 - 648625 649020 -chrXV 651822 653953 HC_gene_8575 28 - 651822 653953 -chrXV 657156 658491 MC_gene_8576 1 - 657156 658491 -chrXV 659650 662151 HC_gene_8577 119 - 659650 662151 -chrXV 662306 662726 MC_gene_8578 1 - 662306 662726 -chrXV 663635 664524 HC_gene_8579 4 - 663635 664524 -chrXV 664955 665535 HC_gene_8580 13 - 664955 665535 -chrXV 665619 666640 MC_gene_8581 1 - 665619 666640 -chrXV 665661 667224 MC_gene_8582 1 - 665661 667224 -chrXV 667518 670593 HC_gene_8583 8 - 667518 670593 -chrXV 671326 672441 HC_gene_8584 41 - 671326 672441 -chrXV 673187 673723 MC_gene_8585 1 - 673187 673723 -chrXV 674098 675677 HC_gene_8586 20 - 674098 675677 -chrXV 675732 677845 LC_gene_8587 1 - 675732 677845 -chrXV 677851 678814 HC_gene_8588 3877 - 677851 678814 -chrXV 679123 680435 LC_gene_8589 1 - 679123 680435 -chrXV 680566 681011 HC_gene_8590 2 - 680566 681011 -chrXV 681401 682165 HC_gene_8591 167 - 681401 682165 -chrXV 682797 683616 MC_gene_8592 1 - 682797 683616 -chrXV 684876 685474 LC_gene_8593 1 - 684876 685474 -chrXV 689154 689386 MC_gene_8594 1 - 689154 689386 -chrXV 690085 690349 HC_gene_8595 11 - 690085 690349 -chrXV 690742 692190 HC_gene_8596 1 - 690742 692190 -chrXV 698004 702202 HC_gene_8597 6 - 698004 702202 -chrXV 703557 709772 MC_gene_8598 4 - 703557 709772 -chrXV 711308 712613 HC_gene_8599 233 - 711308 712613 -chrXV 715373 716869 HC_gene_8600 76 - 715373 716869 -chrXV 718427 720245 HC_gene_8601 392 - 718427 720245 -chrXV 720335 721727 HC_gene_8602 50 - 720335 721727 -chrXV 721807 722604 LC_gene_8603 1 - 721807 722604 -chrXV 725440 727243 HC_gene_8604 11 - 725440 727243 -chrXV 729833 733497 HC_gene_8605 26 - 729833 733497 -chrXV 736295 737878 HC_gene_8606 245 - 736295 737878 -chrXV 738816 741772 HC_gene_8607 10 - 738816 741772 -chrXV 742034 742635 MC_gene_8608 1 - 742034 742635 -chrXV 744043 745379 HC_gene_8609 24 - 744043 745379 -chrXV 745508 746144 LC_gene_8610 1 - 745508 746144 -chrXV 746405 749039 HC_gene_8611 187 - 746405 749039 -chrXV 751870 755066 HC_gene_8612 27 - 751870 755066 -chrXV 756302 757620 HC_gene_8613 113 - 756302 757620 -chrXV 758465 758932 LC_gene_8614 1 - 758465 758932 -chrXV 759236 759530 HC_gene_8615 67 - 759236 759530 -chrXV 760681 761286 HC_gene_8616 407 - 760681 761286 -chrXV 761476 762105 HC_gene_8617 130 - 761476 762105 -chrXV 766630 767998 HC_gene_8618 43 - 766630 767998 -chrXV 769521 769898 LC_gene_8619 1 - 769521 769898 -chrXV 769910 770330 HC_gene_8620 4 - 769910 770330 -chrXV 770699 772206 MC_gene_8621 1 - 770699 772206 -chrXV 772234 772429 MC_gene_8622 1 - 772234 772429 -chrXV 775386 775683 LC_gene_8623 1 - 775386 775683 -chrXV 778442 779424 HC_gene_8624 498 - 778442 779424 -chrXV 779984 781551 MC_gene_8625 1 - 779984 781551 -chrXV 783264 784401 HC_gene_8626 2 - 783264 784401 -chrXV 785991 786924 MC_gene_8627 1 - 785991 786924 -chrXV 788780 789826 MC_gene_8628 1 - 788780 789826 -chrXV 789920 792281 HC_gene_8629 96 - 789920 792281 -chrXV 793958 796854 HC_gene_8630 44 - 793958 796854 -chrXV 795705 796855 HC_gene_8631 153 - 795705 796855 -chrXV 797048 798386 LC_gene_8632 1 - 797048 798386 -chrXV 798515 800742 HC_gene_8633 7 - 798515 800742 -chrXV 800943 802351 HC_gene_8634 22 - 800943 802351 -chrXV 802453 803488 HC_gene_8635 117 - 802453 803488 -chrXV 804200 804875 MC_gene_8636 1 - 804200 804875 -chrXV 804911 807044 HC_gene_8637 120 - 804911 807044 -chrXV 808182 810848 HC_gene_8638 20 - 808182 810848 -chrXV 811444 811841 HC_gene_8639 3 - 811444 811841 -chrXV 811954 813738 HC_gene_8640 188 - 811954 813738 -chrXV 815690 817049 HC_gene_8641 291 - 815690 817049 -chrXV 818032 818285 LC_gene_8642 1 - 818032 818285 -chrXV 820264 820746 LC_gene_8643 1 - 820264 820746 -chrXV 820926 821339 HC_gene_8644 3 - 820926 821339 -chrXV 822389 825432 HC_gene_8645 119 - 822389 825432 -chrXV 826648 830736 HC_gene_8646 337 - 826648 830736 -chrXV 830922 832112 HC_gene_8647 182 - 830922 832112 -chrXV 833654 834090 LC_gene_8648 1 - 833654 834090 -chrXV 834182 836516 MC_gene_8649 7 - 834182 836516 -chrXV 836250 836630 MC_gene_8650 1 - 836250 836630 -chrXV 836350 837039 MC_gene_8651 1 - 836350 837039 -chrXV 837598 838148 HC_gene_8652 14 - 837598 838148 -chrXV 838945 841078 HC_gene_8653 13 - 838945 841078 -chrXV 841280 842183 HC_gene_8654 97 - 841280 842183 -chrXV 843623 844754 HC_gene_8655 29 - 843623 844754 -chrXV 844794 845804 HC_gene_8656 98 - 844794 845804 -chrXV 846173 847158 HC_gene_8657 203 - 846173 847158 -chrXV 848874 850059 HC_gene_8658 11 - 848874 850059 -chrXV 850856 851872 HC_gene_8659 75 - 850856 851872 -chrXV 852035 853902 HC_gene_8660 34 - 852035 853902 -chrXV 853041 854032 HC_gene_8661 3 - 853041 854032 -chrXV 854477 854786 LC_gene_8662 1 - 854477 854786 -chrXV 855077 856753 HC_gene_8663 9 - 855077 856753 -chrXV 865573 866547 HC_gene_8664 40 - 865573 866547 -chrXV 867921 868340 LC_gene_8665 1 - 867921 868340 -chrXV 868989 869597 HC_gene_8666 8 - 868989 869597 -chrXV 870125 870687 LC_gene_8667 1 - 870125 870687 -chrXV 873976 875348 HC_gene_8668 34 - 873976 875348 -chrXV 876390 877730 HC_gene_8669 847 - 876390 877730 -chrXV 880139 880489 LC_gene_8670 1 - 880139 880489 -chrXV 881073 881950 MC_gene_8671 1 - 881073 881950 -chrXV 882665 884112 MC_gene_8672 1 - 882665 884112 -chrXV 887891 888752 HC_gene_8673 93 - 887891 888752 -chrXV 889761 891544 HC_gene_8674 58 - 889761 891544 -chrXV 891549 892259 HC_gene_8675 1 - 891549 892259 -chrXV 892624 896489 HC_gene_8676 35 - 892624 896489 -chrXV 896561 898388 HC_gene_8677 660 - 896561 898388 -chrXV 898845 899986 HC_gene_8678 81 - 898845 899986 -chrXV 900149 901221 HC_gene_8679 3380 - 900149 901221 -chrXV 901640 903277 HC_gene_8680 3 - 901640 903277 -chrXV 904496 905543 LC_gene_8681 1 - 904496 905543 -chrXV 906091 908204 HC_gene_8682 32 - 906091 908204 -chrXV 908798 911662 HC_gene_8683 1 - 908798 911662 -chrXV 911628 912515 HC_gene_8684 10 - 911628 912515 -chrXV 913523 915202 HC_gene_8685 43 - 913523 915202 -chrXV 918445 921315 HC_gene_8686 26 - 918445 921315 -chrXV 921056 922925 HC_gene_8687 287 - 921056 922925 -chrXV 923094 925185 HC_gene_8688 4 - 923094 925185 -chrXV 929874 930219 LC_gene_8689 1 - 929874 930219 -chrXV 930593 931164 HC_gene_8690 605 - 930593 931164 -chrXV 936626 939418 HC_gene_8691 31 - 936626 939418 -chrXV 939546 940014 MC_gene_8692 1 - 939546 940014 -chrXV 939550 940180 MC_gene_8693 1 - 939550 940180 -chrXV 940331 940954 MC_gene_8694 1 - 940331 940954 -chrXV 943891 944362 LC_gene_8695 1 - 943891 944362 -chrXV 946004 949216 HC_gene_8696 322 - 946004 949216 -chrXV 952264 953675 LC_gene_8697 1 - 952264 953675 -chrXV 956803 957689 LC_gene_8698 1 - 956803 957689 -chrXV 958138 960201 HC_gene_8699 188 - 958138 960201 -chrXV 966506 968893 HC_gene_8700 222 - 966506 968893 -chrXV 969087 969487 HC_gene_8701 1 - 969087 969487 -chrXV 969171 970034 HC_gene_8702 16 - 969171 970034 -chrXV 970532 971249 LC_gene_8703 1 - 970532 971249 -chrXV 976562 978202 HC_gene_8704 372 - 976562 978202 -chrXV 980866 981472 HC_gene_8705 67 - 980866 981472 -chrXV 984133 986479 HC_gene_8706 14 - 984133 986479 -chrXV 986719 988801 HC_gene_8707 2 - 986719 988801 -chrXV 988868 989450 MC_gene_8708 1 - 988868 989450 -chrXV 991582 992591 MC_gene_8709 1 - 991582 992591 -chrXV 992793 994892 HC_gene_8710 4 - 992793 994892 -chrXV 998303 1000843 HC_gene_8711 12 - 998303 1000843 -chrXV 1001012 1003248 HC_gene_8712 27 - 1001012 1003248 -chrXV 1003545 1004164 HC_gene_8713 4 - 1003545 1004164 -chrXV 1006788 1007975 LC_gene_8714 1 - 1006788 1007975 -chrXV 1008981 1009730 HC_gene_8715 117 - 1008981 1009730 -chrXV 1010377 1010827 LC_gene_8716 1 - 1010377 1010827 -chrXV 1013112 1015054 HC_gene_8717 55 - 1013112 1015054 -chrXV 1015272 1017571 HC_gene_8718 235 - 1015272 1017571 -chrXV 1017514 1018790 HC_gene_8719 355 - 1017514 1018790 -chrXV 1019283 1019795 MC_gene_8720 1 - 1019283 1019795 -chrXV 1019878 1023236 HC_gene_8721 3 - 1019878 1023236 -chrXV 1023391 1023658 MC_gene_8722 1 - 1023391 1023658 -chrXV 1026641 1026972 HC_gene_8723 1 - 1026641 1026972 -chrXV 1028080 1028694 HC_gene_8724 6238 - 1028080 1028694 -chrXV 1029002 1031471 HC_gene_8725 85 - 1029002 1031471 -chrXV 1034426 1036542 HC_gene_8726 22 - 1034426 1036542 -chrXV 1037498 1039410 MC_gene_8727 1 - 1037498 1039410 -chrXV 1039376 1040626 MC_gene_8728 1 - 1039376 1040626 -chrXV 1041468 1043178 HC_gene_8729 264 - 1041468 1043178 -chrXV 1045404 1046066 MC_gene_8730 1 - 1045404 1046066 -chrXV 1047897 1049770 HC_gene_8731 1 - 1047897 1049770 -chrXV 1048020 1050860 HC_gene_8732 2 - 1048020 1050860 -chrXV 1051031 1051729 MC_gene_8733 1 - 1051031 1051729 -chrXV 1054516 1054929 HC_gene_8734 1 - 1054516 1054929 -chrXV 1057624 1058559 MC_gene_8735 1 - 1057624 1058559 -chrXV 1059170 1059857 LC_gene_8736 1 - 1059170 1059857 -chrXV 1059998 1063156 HC_gene_8737 378 - 1059998 1063156 -chrXV 1063937 1064401 HC_gene_8738 2 - 1063937 1064401 -chrXV 1066503 1066987 LC_gene_8739 1 - 1066503 1066987 -chrXV 1070227 1070904 HC_gene_8740 3 - 1070227 1070904 -chrXV 1071594 1072961 LC_gene_8741 1 - 1071594 1072961 -chrXV 1074093 1074851 MC_gene_8742 1 - 1074093 1074851 -chrXV 1076147 1076499 LC_gene_8743 1 - 1076147 1076499 -chrXV 1076680 1078066 LC_gene_8744 1 - 1076680 1078066 -chrXV 1078245 1079544 LC_gene_8745 1 - 1078245 1079544 -chrXV 1084256 1086619 LC_gene_8746 1 - 1084256 1086619 -chrXVI 11590 12881 LC_gene_8747 1 + 11590 12881 -chrXVI 13062 13602 LC_gene_8748 1 + 13062 13602 -chrXVI 14657 14945 LC_gene_8749 1 + 14657 14945 -chrXVI 17206 19248 LC_gene_8750 1 + 17206 19248 -chrXVI 22215 24766 HC_gene_8751 17 + 22215 24766 -chrXVI 25012 26169 HC_gene_8752 395 + 25012 26169 -chrXVI 28587 29266 MC_gene_8753 1 + 28587 29266 -chrXVI 29339 29967 MC_gene_8754 1 + 29339 29967 -chrXVI 30056 30396 HC_gene_8755 971 + 30056 30396 -chrXVI 31225 32904 HC_gene_8756 26 + 31225 32904 -chrXVI 33008 35089 HC_gene_8757 15 + 33008 35089 -chrXVI 35203 37865 HC_gene_8758 9 + 35203 37865 -chrXVI 38152 38866 HC_gene_8759 55 + 38152 38866 -chrXVI 39072 40152 HC_gene_8760 113 + 39072 40152 -chrXVI 40931 43185 HC_gene_8761 62 + 40931 43185 -chrXVI 43266 44563 LC_gene_8762 1 + 43266 44563 -chrXVI 46707 49064 HC_gene_8763 163 + 46707 49064 -chrXVI 49211 51135 HC_gene_8764 94 + 49211 51135 -chrXVI 52922 53500 HC_gene_8765 12 + 52922 53500 -chrXVI 55593 56760 MC_gene_8766 1 + 55593 56760 -chrXVI 59123 62690 MC_gene_8767 1 + 59123 62690 -chrXVI 60170 63106 MC_gene_8768 2 + 60170 63106 -chrXVI 63197 64859 HC_gene_8769 9 + 63197 64859 -chrXVI 66231 66918 MC_gene_8770 1 + 66231 66918 -chrXVI 67671 69119 HC_gene_8771 11 + 67671 69119 -chrXVI 69242 72147 HC_gene_8772 43 + 69242 72147 -chrXVI 72593 73372 MC_gene_8773 1 + 72593 73372 -chrXVI 74035 74838 MC_gene_8774 1 + 74035 74838 -chrXVI 75177 75592 HC_gene_8775 48 + 75177 75592 -chrXVI 76696 79864 MC_gene_8776 5 + 76696 79864 -chrXVI 79573 81400 MC_gene_8777 3 + 79573 81400 -chrXVI 81480 82629 MC_gene_8778 1 + 81480 82629 -chrXVI 84474 87012 HC_gene_8779 54 + 84474 87012 -chrXVI 88425 90532 HC_gene_8780 69 + 88425 90532 -chrXVI 95427 96499 HC_gene_8781 8 + 95427 96499 -chrXVI 99197 100312 HC_gene_8782 234 + 99197 100312 -chrXVI 100462 101470 HC_gene_8783 709 + 100462 101470 -chrXVI 103134 104919 HC_gene_8784 119 + 103134 104919 -chrXVI 104962 105560 HC_gene_8785 4 + 104962 105560 -chrXVI 105675 106010 HC_gene_8786 8 + 105675 106010 -chrXVI 106140 106882 HC_gene_8787 11 + 106140 106882 -chrXVI 107110 108344 HC_gene_8788 161 + 107110 108344 -chrXVI 108613 114594 HC_gene_8789 301 + 108613 114594 -chrXVI 115173 116594 HC_gene_8790 27 + 115173 116594 -chrXVI 117046 117969 HC_gene_8791 61 + 117046 117969 -chrXVI 118253 120239 HC_gene_8792 51 + 118253 120239 -chrXVI 121466 121760 HC_gene_8793 3 + 121466 121760 -chrXVI 123205 125696 HC_gene_8794 69 + 123205 125696 -chrXVI 125973 126576 HC_gene_8795 696 + 125973 126576 -chrXVI 128064 128563 MC_gene_8796 1 + 128064 128563 -chrXVI 128235 129284 MC_gene_8797 1 + 128235 129284 -chrXVI 128464 129666 MC_gene_8798 1 + 128464 129666 -chrXVI 130128 132320 HC_gene_8799 5 + 130128 132320 -chrXVI 132604 135602 HC_gene_8800 94 + 132604 135602 -chrXVI 135776 136535 HC_gene_8801 2374 + 135776 136535 -chrXVI 136681 138320 HC_gene_8802 16 + 136681 138320 -chrXVI 138635 139541 HC_gene_8803 685 + 138635 139541 -chrXVI 143389 144596 HC_gene_8804 7 + 143389 144596 -chrXVI 145927 146550 MC_gene_8805 1 + 145927 146550 -chrXVI 146705 147339 HC_gene_8806 3 + 146705 147339 -chrXVI 147383 148604 HC_gene_8807 84 + 147383 148604 -chrXVI 149235 150367 MC_gene_8808 1 + 149235 150367 -chrXVI 150565 151465 HC_gene_8809 44 + 150565 151465 -chrXVI 153452 154226 HC_gene_8810 255 + 153452 154226 -chrXVI 157826 159689 HC_gene_8811 18 + 157826 159689 -chrXVI 159834 162455 HC_gene_8812 33 + 159834 162455 -chrXVI 162605 163755 LC_gene_8813 1 + 162605 163755 -chrXVI 163891 165910 HC_gene_8814 133 + 163891 165910 -chrXVI 166089 167729 HC_gene_8815 48 + 166089 167729 -chrXVI 169775 170353 LC_gene_8816 1 + 169775 170353 -chrXVI 170918 171944 LC_gene_8817 1 + 170918 171944 -chrXVI 172302 173069 MC_gene_8818 1 + 172302 173069 -chrXVI 173117 174797 HC_gene_8819 215 + 173117 174797 -chrXVI 175001 175990 HC_gene_8820 63 + 175001 175990 -chrXVI 176204 177981 HC_gene_8821 1 + 176204 177981 -chrXVI 178098 179129 HC_gene_8822 59 + 178098 179129 -chrXVI 179222 181350 HC_gene_8823 9 + 179222 181350 -chrXVI 181359 183181 HC_gene_8824 17 + 181359 183181 -chrXVI 183769 184046 MC_gene_8825 1 + 183769 184046 -chrXVI 184911 185115 MC_gene_8826 1 + 184911 185115 -chrXVI 188108 188749 MC_gene_8827 1 + 188108 188749 -chrXVI 189040 191107 MC_gene_8828 1 + 189040 191107 -chrXVI 191388 192914 HC_gene_8829 54 + 191388 192914 -chrXVI 195212 195994 HC_gene_8830 5 + 195212 195994 -chrXVI 198015 198928 HC_gene_8831 1 + 198015 198928 -chrXVI 199017 199549 HC_gene_8832 171 + 199017 199549 -chrXVI 202928 203438 HC_gene_8833 1 + 202928 203438 -chrXVI 203172 205051 HC_gene_8834 75 + 203172 205051 -chrXVI 205200 207815 HC_gene_8835 9 + 205200 207815 -chrXVI 207986 210050 HC_gene_8836 85 + 207986 210050 -chrXVI 210863 211244 HC_gene_8837 6 + 210863 211244 -chrXVI 211297 211873 HC_gene_8838 11 + 211297 211873 -chrXVI 212096 212933 HC_gene_8839 240 + 212096 212933 -chrXVI 215661 216034 HC_gene_8840 2 + 215661 216034 -chrXVI 218577 220566 HC_gene_8841 8 + 218577 220566 -chrXVI 223100 224202 HC_gene_8842 53 + 223100 224202 -chrXVI 224149 226190 LC_gene_8843 1 + 224149 226190 -chrXVI 228274 228967 HC_gene_8844 190 + 228274 228967 -chrXVI 231070 232574 HC_gene_8845 20 + 231070 232574 -chrXVI 237305 239167 HC_gene_8846 8 + 237305 239167 -chrXVI 239398 239964 LC_gene_8847 1 + 239398 239964 -chrXVI 241763 242710 LC_gene_8848 1 + 241763 242710 -chrXVI 243155 244324 HC_gene_8849 4 + 243155 244324 -chrXVI 246922 250677 HC_gene_8850 468 + 246922 250677 -chrXVI 252098 252675 LC_gene_8851 1 + 252098 252675 -chrXVI 253561 254497 LC_gene_8852 1 + 253561 254497 -chrXVI 254693 256898 HC_gene_8853 85 + 254693 256898 -chrXVI 257522 258082 LC_gene_8854 1 + 257522 258082 -chrXVI 259687 260972 LC_gene_8855 1 + 259687 260972 -chrXVI 264964 266262 HC_gene_8856 27 + 264964 266262 -chrXVI 267774 271063 HC_gene_8857 4 + 267774 271063 -chrXVI 271248 272398 HC_gene_8858 56 + 271248 272398 -chrXVI 274752 275982 HC_gene_8859 9 + 274752 275982 -chrXVI 280266 280909 HC_gene_8860 39 + 280266 280909 -chrXVI 280452 281063 HC_gene_8861 41 + 280452 281063 -chrXVI 282089 283020 HC_gene_8862 3967 + 282089 283020 -chrXVI 283255 285539 LC_gene_8863 1 + 283255 285539 -chrXVI 286629 287400 HC_gene_8864 5 + 286629 287400 -chrXVI 289403 289621 MC_gene_8865 1 + 289403 289621 -chrXVI 289658 291360 LC_gene_8866 1 + 289658 291360 -chrXVI 296993 298583 HC_gene_8867 451 + 296993 298583 -chrXVI 299809 300339 LC_gene_8868 1 + 299809 300339 -chrXVI 301588 303058 HC_gene_8869 46 + 301588 303058 -chrXVI 303100 304319 HC_gene_8870 4220 + 303100 304319 -chrXVI 305239 306246 HC_gene_8871 198 + 305239 306246 -chrXVI 306460 308565 LC_gene_8872 1 + 306460 308565 -chrXVI 308602 309760 MC_gene_8873 1 + 308602 309760 -chrXVI 310172 313011 HC_gene_8874 52 + 310172 313011 -chrXVI 313257 316559 HC_gene_8875 11 + 313257 316559 -chrXVI 316726 317617 HC_gene_8876 35 + 316726 317617 -chrXVI 318981 319243 HC_gene_8877 1 + 318981 319243 -chrXVI 320984 321829 LC_gene_8878 1 + 320984 321829 -chrXVI 322053 323988 HC_gene_8879 6 + 322053 323988 -chrXVI 324156 324928 MC_gene_8880 1 + 324156 324928 -chrXVI 326540 327762 HC_gene_8881 116 + 326540 327762 -chrXVI 329470 331831 MC_gene_8882 1 + 329470 331831 -chrXVI 335936 337473 HC_gene_8883 5 + 335936 337473 -chrXVI 338817 339270 LC_gene_8884 1 + 338817 339270 -chrXVI 339896 341070 HC_gene_8885 77 + 339896 341070 -chrXVI 342960 343505 LC_gene_8886 1 + 342960 343505 -chrXVI 345546 347395 LC_gene_8887 1 + 345546 347395 -chrXVI 347656 348067 LC_gene_8888 1 + 347656 348067 -chrXVI 348459 349145 HC_gene_8889 39 + 348459 349145 -chrXVI 349074 350075 HC_gene_8890 43 + 349074 350075 -chrXVI 352617 352805 HC_gene_8891 7 + 352617 352805 -chrXVI 355653 357925 HC_gene_8892 12 + 355653 357925 -chrXVI 359282 359691 MC_gene_8893 1 + 359282 359691 -chrXVI 360168 361700 HC_gene_8894 37 + 360168 361700 -chrXVI 361817 363417 HC_gene_8895 31 + 361817 363417 -chrXVI 363867 364399 HC_gene_8896 3 + 363867 364399 -chrXVI 364930 366541 HC_gene_8897 13 + 364930 366541 -chrXVI 366909 368124 HC_gene_8898 47 + 366909 368124 -chrXVI 368795 369860 HC_gene_8899 9 + 368795 369860 -chrXVI 370914 373163 HC_gene_8900 172 + 370914 373163 -chrXVI 373638 375560 HC_gene_8901 70 + 373638 375560 -chrXVI 375500 377183 HC_gene_8902 135 + 375500 377183 -chrXVI 379635 381286 HC_gene_8903 1 + 379635 381286 -chrXVI 381324 383078 HC_gene_8904 211 + 381324 383078 -chrXVI 383321 384515 HC_gene_8905 81 + 383321 384515 -chrXVI 389532 393766 HC_gene_8906 21 + 389532 393766 -chrXVI 393995 396723 HC_gene_8907 8 + 393995 396723 -chrXVI 404919 406244 HC_gene_8908 130 + 404919 406244 -chrXVI 406608 407650 HC_gene_8909 2268 + 406608 407650 -chrXVI 409076 410701 HC_gene_8910 1 + 409076 410701 -chrXVI 410295 412056 HC_gene_8911 10 + 410295 412056 -chrXVI 412180 415584 HC_gene_8912 38 + 412180 415584 -chrXVI 415732 418166 HC_gene_8913 13 + 415732 418166 -chrXVI 418317 420060 HC_gene_8914 12 + 418317 420060 -chrXVI 420742 422972 HC_gene_8915 18 + 420742 422972 -chrXVI 425756 427857 HC_gene_8916 82 + 425756 427857 -chrXVI 427925 428713 HC_gene_8917 31 + 427925 428713 -chrXVI 429813 431514 HC_gene_8918 95 + 429813 431514 -chrXVI 432542 434205 HC_gene_8919 916 + 432542 434205 -chrXVI 434282 435794 HC_gene_8920 8 + 434282 435794 -chrXVI 436233 436709 MC_gene_8921 1 + 436233 436709 -chrXVI 442652 443334 MC_gene_8922 1 + 442652 443334 -chrXVI 442786 443538 MC_gene_8923 1 + 442786 443538 -chrXVI 443761 444360 HC_gene_8924 8 + 443761 444360 -chrXVI 444517 445208 HC_gene_8925 162 + 444517 445208 -chrXVI 445371 445760 LC_gene_8926 1 + 445371 445760 -chrXVI 451169 451561 LC_gene_8927 1 + 451169 451561 -chrXVI 451577 452156 MC_gene_8928 1 + 451577 452156 -chrXVI 453401 454155 HC_gene_8929 21 + 453401 454155 -chrXVI 454418 455433 LC_gene_8930 1 + 454418 455433 -chrXVI 455663 456483 HC_gene_8931 1 + 455663 456483 -chrXVI 456257 457032 HC_gene_8932 2 + 456257 457032 -chrXVI 458740 459917 HC_gene_8933 43 + 458740 459917 -chrXVI 459955 460705 HC_gene_8934 43 + 459955 460705 -chrXVI 462400 462639 MC_gene_8935 1 + 462400 462639 -chrXVI 464363 465863 HC_gene_8936 490 + 464363 465863 -chrXVI 465874 466621 HC_gene_8937 120 + 465874 466621 -chrXVI 467155 469817 HC_gene_8938 6 + 467155 469817 -chrXVI 469880 472322 HC_gene_8939 153 + 469880 472322 -chrXVI 472237 472987 HC_gene_8940 2 + 472237 472987 -chrXVI 475168 476907 LC_gene_8941 1 + 475168 476907 -chrXVI 479213 480311 HC_gene_8942 57 + 479213 480311 -chrXVI 480496 481181 HC_gene_8943 107 + 480496 481181 -chrXVI 481478 481884 LC_gene_8944 1 + 481478 481884 -chrXVI 482259 482788 HC_gene_8945 13 + 482259 482788 -chrXVI 483894 485561 LC_gene_8946 1 + 483894 485561 -chrXVI 485797 486243 HC_gene_8947 1 + 485797 486243 -chrXVI 486376 487343 HC_gene_8948 47 + 486376 487343 -chrXVI 488484 490095 LC_gene_8949 1 + 488484 490095 -chrXVI 491986 493050 HC_gene_8950 2 + 491986 493050 -chrXVI 493481 495376 HC_gene_8951 17 + 493481 495376 -chrXVI 495485 497779 HC_gene_8952 8 + 495485 497779 -chrXVI 498030 499393 HC_gene_8953 487 + 498030 499393 -chrXVI 500526 501026 LC_gene_8954 1 + 500526 501026 -chrXVI 503209 504386 HC_gene_8955 66 + 503209 504386 -chrXVI 506614 507500 HC_gene_8956 2 + 506614 507500 -chrXVI 508171 510607 HC_gene_8957 15 + 508171 510607 -chrXVI 511851 512335 HC_gene_8958 16 + 511851 512335 -chrXVI 514540 515763 LC_gene_8959 1 + 514540 515763 -chrXVI 517634 519916 HC_gene_8960 6 + 517634 519916 -chrXVI 520702 525083 HC_gene_8961 15 + 520702 525083 -chrXVI 525487 525769 LC_gene_8962 1 + 525487 525769 -chrXVI 526403 527468 MC_gene_8963 1 + 526403 527468 -chrXVI 526857 527476 MC_gene_8964 1 + 526857 527476 -chrXVI 527516 528948 HC_gene_8965 79 + 527516 528948 -chrXVI 529601 533538 HC_gene_8966 70 + 529601 533538 -chrXVI 534951 535735 HC_gene_8967 362 + 534951 535735 -chrXVI 539137 542049 HC_gene_8968 5 + 539137 542049 -chrXVI 544055 544330 HC_gene_8969 8 + 544055 544330 -chrXVI 544602 548208 HC_gene_8970 3 + 544602 548208 -chrXVI 545488 548359 HC_gene_8971 3 + 545488 548359 -chrXVI 548461 550475 HC_gene_8972 12 + 548461 550475 -chrXVI 552006 553427 HC_gene_8973 40 + 552006 553427 -chrXVI 553519 554561 HC_gene_8974 1 + 553519 554561 -chrXVI 554587 555771 HC_gene_8975 37 + 554587 555771 -chrXVI 556352 558022 MC_gene_8976 1 + 556352 558022 -chrXVI 557969 558335 MC_gene_8977 1 + 557969 558335 -chrXVI 558370 560132 HC_gene_8978 7 + 558370 560132 -chrXVI 560409 560772 MC_gene_8979 1 + 560409 560772 -chrXVI 563300 563952 LC_gene_8980 1 + 563300 563952 -chrXVI 564080 564453 MC_gene_8981 1 + 564080 564453 -chrXVI 565347 566170 HC_gene_8982 3 + 565347 566170 -chrXVI 567276 569218 HC_gene_8983 2 + 567276 569218 -chrXVI 570816 571488 MC_gene_8984 1 + 570816 571488 -chrXVI 572479 575207 HC_gene_8985 73 + 572479 575207 -chrXVI 575423 575713 LC_gene_8986 1 + 575423 575713 -chrXVI 576456 577549 HC_gene_8987 92 + 576456 577549 -chrXVI 581559 581995 MC_gene_8988 1 + 581559 581995 -chrXVI 582295 582619 LC_gene_8989 1 + 582295 582619 -chrXVI 583764 584546 HC_gene_8990 3 + 583764 584546 -chrXVI 586546 588245 HC_gene_8991 7 + 586546 588245 -chrXVI 590692 591731 LC_gene_8992 1 + 590692 591731 -chrXVI 591813 592287 LC_gene_8993 1 + 591813 592287 -chrXVI 593405 596390 HC_gene_8994 10 + 593405 596390 -chrXVI 596662 599694 HC_gene_8995 18 + 596662 599694 -chrXVI 599819 600328 HC_gene_8996 319 + 599819 600328 -chrXVI 601862 602302 LC_gene_8997 1 + 601862 602302 -chrXVI 607559 608838 HC_gene_8998 3 + 607559 608838 -chrXVI 610394 613368 HC_gene_8999 52 + 610394 613368 -chrXVI 614766 615339 MC_gene_9000 1 + 614766 615339 -chrXVI 615376 619191 HC_gene_9001 4 + 615376 619191 -chrXVI 620118 621931 HC_gene_9002 30 + 620118 621931 -chrXVI 622871 624555 HC_gene_9003 712 + 622871 624555 -chrXVI 627856 628433 MC_gene_9004 1 + 627856 628433 -chrXVI 628592 631345 HC_gene_9005 13 + 628592 631345 -chrXVI 631487 633888 HC_gene_9006 10 + 631487 633888 -chrXVI 634071 637328 HC_gene_9007 5 + 634071 637328 -chrXVI 639273 641224 HC_gene_9008 52 + 639273 641224 -chrXVI 641238 641524 MC_gene_9009 1 + 641238 641524 -chrXVI 642089 643557 HC_gene_9010 2940 + 642089 643557 -chrXVI 643778 645366 HC_gene_9011 350 + 643778 645366 -chrXVI 645873 646423 HC_gene_9012 2776 + 645873 646423 -chrXVI 646442 646941 LC_gene_9013 1 + 646442 646941 -chrXVI 647297 648449 HC_gene_9014 44 + 647297 648449 -chrXVI 648595 650059 HC_gene_9015 549 + 648595 650059 -chrXVI 654144 654923 HC_gene_9016 5976 + 654144 654923 -chrXVI 655215 655876 LC_gene_9017 1 + 655215 655876 -chrXVI 656777 657407 HC_gene_9018 8 + 656777 657407 -chrXVI 657392 659126 HC_gene_9019 17 + 657392 659126 -chrXVI 659161 661286 HC_gene_9020 13 + 659161 661286 -chrXVI 664922 665833 HC_gene_9021 165 + 664922 665833 -chrXVI 667201 667494 LC_gene_9022 1 + 667201 667494 -chrXVI 667627 670961 HC_gene_9023 6 + 667627 670961 -chrXVI 671088 672448 HC_gene_9024 34 + 671088 672448 -chrXVI 672488 673553 HC_gene_9025 34 + 672488 673553 -chrXVI 673665 674898 HC_gene_9026 84 + 673665 674898 -chrXVI 675724 676013 MC_gene_9027 1 + 675724 676013 -chrXVI 677171 677757 HC_gene_9028 941 + 677171 677757 -chrXVI 678543 679408 MC_gene_9029 1 + 678543 679408 -chrXVI 679527 681113 HC_gene_9030 78 + 679527 681113 -chrXVI 681204 682980 HC_gene_9031 82 + 681204 682980 -chrXVI 683894 684489 MC_gene_9032 1 + 683894 684489 -chrXVI 685635 687938 HC_gene_9033 7 + 685635 687938 -chrXVI 688158 689227 HC_gene_9034 34 + 688158 689227 -chrXVI 689998 692788 HC_gene_9035 90 + 689998 692788 -chrXVI 695381 695688 MC_gene_9036 1 + 695381 695688 -chrXVI 695749 697426 LC_gene_9037 1 + 695749 697426 -chrXVI 697547 698412 HC_gene_9038 8 + 697547 698412 -chrXVI 698779 700119 HC_gene_9039 39 + 698779 700119 -chrXVI 700561 702075 HC_gene_9040 6655 + 700561 702075 -chrXVI 702106 702368 MC_gene_9041 1 + 702106 702368 -chrXVI 703441 704538 MC_gene_9042 1 + 703441 704538 -chrXVI 704828 706716 HC_gene_9043 17 + 704828 706716 -chrXVI 706885 708476 HC_gene_9044 15 + 706885 708476 -chrXVI 708748 709959 MC_gene_9045 1 + 708748 709959 -chrXVI 710055 711406 HC_gene_9046 209 + 710055 711406 -chrXVI 713232 716160 HC_gene_9047 12 + 713232 716160 -chrXVI 719589 721030 HC_gene_9048 82 + 719589 721030 -chrXVI 725156 727210 HC_gene_9049 1 + 725156 727210 -chrXVI 726003 727296 HC_gene_9050 1 + 726003 727296 -chrXVI 727319 728759 HC_gene_9051 11 + 727319 728759 -chrXVI 728990 729523 HC_gene_9052 1 + 728990 729523 -chrXVI 729769 730301 HC_gene_9053 253 + 729769 730301 -chrXVI 730465 731193 HC_gene_9054 120 + 730465 731193 -chrXVI 732262 733403 HC_gene_9055 579 + 732262 733403 -chrXVI 733620 734841 LC_gene_9056 1 + 733620 734841 -chrXVI 740003 741442 HC_gene_9057 45 + 740003 741442 -chrXVI 742373 743850 HC_gene_9058 166 + 742373 743850 -chrXVI 744614 745699 HC_gene_9059 41 + 744614 745699 -chrXVI 747280 749255 HC_gene_9060 7 + 747280 749255 -chrXVI 752230 753122 HC_gene_9061 623 + 752230 753122 -chrXVI 753255 754371 HC_gene_9062 177 + 753255 754371 -chrXVI 755682 758453 HC_gene_9063 3 + 755682 758453 -chrXVI 759801 760542 HC_gene_9064 1 + 759801 760542 -chrXVI 760256 761028 HC_gene_9065 1 + 760256 761028 -chrXVI 764200 765699 MC_gene_9066 1 + 764200 765699 -chrXVI 767714 769053 HC_gene_9067 109 + 767714 769053 -chrXVI 769542 770074 HC_gene_9068 137 + 769542 770074 -chrXVI 771256 773811 HC_gene_9069 10 + 771256 773811 -chrXVI 774432 774691 LC_gene_9070 1 + 774432 774691 -chrXVI 775762 776378 MC_gene_9071 1 + 775762 776378 -chrXVI 777541 780386 HC_gene_9072 1 + 777541 780386 -chrXVI 780474 781069 HC_gene_9073 2 + 780474 781069 -chrXVI 780836 781465 HC_gene_9074 1 + 780836 781465 -chrXVI 781999 784736 HC_gene_9075 6 + 781999 784736 -chrXVI 785451 785822 HC_gene_9076 3 + 785451 785822 -chrXVI 786034 787659 HC_gene_9077 27 + 786034 787659 -chrXVI 787863 789511 HC_gene_9078 79 + 787863 789511 -chrXVI 789892 791201 HC_gene_9079 36 + 789892 791201 -chrXVI 792648 793822 HC_gene_9080 136 + 792648 793822 -chrXVI 794939 795909 HC_gene_9081 5522 + 794939 795909 -chrXVI 796119 796419 LC_gene_9082 1 + 796119 796419 -chrXVI 797522 797870 HC_gene_9083 648 + 797522 797870 -chrXVI 798023 798991 HC_gene_9084 39 + 798023 798991 -chrXVI 799177 802316 HC_gene_9085 17 + 799177 802316 -chrXVI 802275 804227 HC_gene_9086 49 + 802275 804227 -chrXVI 804232 804560 MC_gene_9087 1 + 804232 804560 -chrXVI 804581 805351 LC_gene_9088 1 + 804581 805351 -chrXVI 809854 810594 MC_gene_9089 1 + 809854 810594 -chrXVI 810446 812835 MC_gene_9090 2 + 810446 812835 -chrXVI 812836 813171 HC_gene_9091 1 + 812836 813171 -chrXVI 813231 813553 MC_gene_9092 1 + 813231 813553 -chrXVI 814299 815622 HC_gene_9093 21 + 814299 815622 -chrXVI 818295 819205 HC_gene_9094 230 + 818295 819205 -chrXVI 819782 820451 LC_gene_9095 1 + 819782 820451 -chrXVI 821730 822053 HC_gene_9096 37 + 821730 822053 -chrXVI 822564 824475 HC_gene_9097 805 + 822564 824475 -chrXVI 824960 825512 LC_gene_9098 1 + 824960 825512 -chrXVI 828068 828302 LC_gene_9099 1 + 828068 828302 -chrXVI 829455 831129 HC_gene_9100 769 + 829455 831129 -chrXVI 833128 833524 MC_gene_9101 1 + 833128 833524 -chrXVI 833653 837700 HC_gene_9102 117 + 833653 837700 -chrXVI 840275 840612 MC_gene_9103 1 + 840275 840612 -chrXVI 841094 842788 HC_gene_9104 11 + 841094 842788 -chrXVI 843193 844195 HC_gene_9105 40 + 843193 844195 -chrXVI 844333 844730 MC_gene_9106 1 + 844333 844730 -chrXVI 847956 850504 MC_gene_9107 2 + 847956 850504 -chrXVI 856489 857041 HC_gene_9108 1 + 856489 857041 -chrXVI 857383 860246 HC_gene_9109 65 + 857383 860246 -chrXVI 860946 864133 HC_gene_9110 83 + 860946 864133 -chrXVI 865081 865557 MC_gene_9111 1 + 865081 865557 -chrXVI 866717 868381 MC_gene_9112 1 + 866717 868381 -chrXVI 870690 876127 HC_gene_9113 679 + 870690 876127 -chrXVI 876431 876893 HC_gene_9114 2 + 876431 876893 -chrXVI 877897 880206 HC_gene_9115 87 + 877897 880206 -chrXVI 880622 881078 LC_gene_9116 1 + 880622 881078 -chrXVI 881308 882661 LC_gene_9117 1 + 881308 882661 -chrXVI 882963 883793 HC_gene_9118 1 + 882963 883793 -chrXVI 883225 883862 HC_gene_9119 600 + 883225 883862 -chrXVI 883790 885637 HC_gene_9120 33 + 883790 885637 -chrXVI 885764 886652 HC_gene_9121 30 + 885764 886652 -chrXVI 886626 888041 LC_gene_9122 1 + 886626 888041 -chrXVI 888953 892086 HC_gene_9123 11 + 888953 892086 -chrXVI 892301 893819 HC_gene_9124 14 + 892301 893819 -chrXVI 895938 897077 HC_gene_9125 32 + 895938 897077 -chrXVI 900130 900532 HC_gene_9126 128 + 900130 900532 -chrXVI 900716 901641 HC_gene_9127 375 + 900716 901641 -chrXVI 902007 906791 MC_gene_9128 3 + 902007 906791 -chrXVI 905955 906813 MC_gene_9129 2 + 905955 906813 -chrXVI 906916 909742 HC_gene_9130 20 + 906916 909742 -chrXVI 911239 912086 HC_gene_9131 689 + 911239 912086 -chrXVI 912625 917062 HC_gene_9132 25 + 912625 917062 -chrXVI 919319 920937 HC_gene_9133 298 + 919319 920937 -chrXVI 921155 921788 LC_gene_9134 1 + 921155 921788 -chrXVI 921904 922918 LC_gene_9135 1 + 921904 922918 -chrXVI 924161 927998 HC_gene_9136 1 + 924161 927998 -chrXVI 928695 930179 HC_gene_9137 7 + 928695 930179 -chrXVI 930248 931264 MC_gene_9138 1 + 930248 931264 -chrXVI 931395 933203 HC_gene_9139 4 + 931395 933203 -chrXVI 934016 935846 HC_gene_9140 31 + 934016 935846 -chrXVI 937220 938093 MC_gene_9141 1 + 937220 938093 -chrXVI 938140 939208 LC_gene_9142 1 + 938140 939208 -chrXVI 939177 939800 MC_gene_9143 1 + 939177 939800 -chrXVI 939861 942438 HC_gene_9144 8 + 939861 942438 -chrXVI 942765 947743 MC_gene_9145 1 + 942765 947743 -chrXVI 12972 14411 MC_gene_9146 1 - 12972 14411 -chrXVI 14351 16900 LC_gene_9147 1 - 14351 16900 -chrXVI 19513 19824 HC_gene_9148 1 - 19513 19824 -chrXVI 20571 21932 HC_gene_9149 1 - 20571 21932 -chrXVI 23734 24713 HC_gene_9150 2 - 23734 24713 -chrXVI 26558 29827 HC_gene_9151 6 - 26558 29827 -chrXVI 30275 31019 MC_gene_9152 1 - 30275 31019 -chrXVI 34105 34439 MC_gene_9153 1 - 34105 34439 -chrXVI 34463 34997 MC_gene_9154 1 - 34463 34997 -chrXVI 35748 36255 MC_gene_9155 1 - 35748 36255 -chrXVI 37797 38019 MC_gene_9156 1 - 37797 38019 -chrXVI 39505 40243 MC_gene_9157 1 - 39505 40243 -chrXVI 40128 40800 MC_gene_9158 1 - 40128 40800 -chrXVI 40145 42984 MC_gene_9159 1 - 40145 42984 -chrXVI 43058 44362 HC_gene_9160 14 - 43058 44362 -chrXVI 44287 46520 HC_gene_9161 84 - 44287 46520 -chrXVI 46640 47194 HC_gene_9162 6 - 46640 47194 -chrXVI 51035 52685 HC_gene_9163 38 - 51035 52685 -chrXVI 52722 53345 LC_gene_9164 1 - 52722 53345 -chrXVI 53394 56015 HC_gene_9165 33 - 53394 56015 -chrXVI 56454 57216 LC_gene_9166 1 - 56454 57216 -chrXVI 62352 63001 MC_gene_9167 1 - 62352 63001 -chrXVI 62521 63066 MC_gene_9168 1 - 62521 63066 -chrXVI 64787 66790 HC_gene_9169 51 - 64787 66790 -chrXVI 69155 70454 LC_gene_9170 1 - 69155 70454 -chrXVI 70968 73062 HC_gene_9171 5 - 70968 73062 -chrXVI 73258 73926 HC_gene_9172 219 - 73258 73926 -chrXVI 74116 74787 HC_gene_9173 186 - 74116 74787 -chrXVI 75549 76254 HC_gene_9174 4908 - 75549 76254 -chrXVI 76589 79393 HC_gene_9175 9 - 76589 79393 -chrXVI 79530 82379 MC_gene_9176 2 - 79530 82379 -chrXVI 82516 84248 HC_gene_9177 29 - 82516 84248 -chrXVI 84271 85338 HC_gene_9178 281 - 84271 85338 -chrXVI 86894 88239 HC_gene_9179 108 - 86894 88239 -chrXVI 90291 95186 HC_gene_9180 30 - 90291 95186 -chrXVI 95299 96267 HC_gene_9181 17 - 95299 96267 -chrXVI 96372 98682 HC_gene_9182 364 - 96372 98682 -chrXVI 99773 100140 MC_gene_9183 1 - 99773 100140 -chrXVI 101283 102751 HC_gene_9184 8 - 101283 102751 -chrXVI 104775 105496 HC_gene_9185 757 - 104775 105496 -chrXVI 105685 105910 MC_gene_9186 1 - 105685 105910 -chrXVI 106316 106715 LC_gene_9187 1 - 106316 106715 -chrXVI 107580 108253 MC_gene_9188 1 - 107580 108253 -chrXVI 114333 116490 MC_gene_9189 2 - 114333 116490 -chrXVI 117323 118027 MC_gene_9190 1 - 117323 118027 -chrXVI 120055 121434 HC_gene_9191 64 - 120055 121434 -chrXVI 126436 128448 HC_gene_9192 44 - 126436 128448 -chrXVI 128395 129188 HC_gene_9193 19 - 128395 129188 -chrXVI 131824 132207 MC_gene_9194 1 - 131824 132207 -chrXVI 132430 132725 HC_gene_9195 1 - 132430 132725 -chrXVI 135071 135433 MC_gene_9196 1 - 135071 135433 -chrXVI 135503 136471 LC_gene_9197 1 - 135503 136471 -chrXVI 139332 143206 HC_gene_9198 114 - 139332 143206 -chrXVI 143335 144110 MC_gene_9199 1 - 143335 144110 -chrXVI 145479 147172 HC_gene_9200 1 - 145479 147172 -chrXVI 148476 150248 HC_gene_9201 39 - 148476 150248 -chrXVI 151338 153154 HC_gene_9202 73 - 151338 153154 -chrXVI 154244 156232 HC_gene_9203 163 - 154244 156232 -chrXVI 156380 157634 HC_gene_9204 2 - 156380 157634 -chrXVI 159575 160030 LC_gene_9205 1 - 159575 160030 -chrXVI 162337 163914 HC_gene_9206 96 - 162337 163914 -chrXVI 165524 165878 MC_gene_9207 1 - 165524 165878 -chrXVI 167702 169420 HC_gene_9208 29 - 167702 169420 -chrXVI 169721 171183 HC_gene_9209 3 - 169721 171183 -chrXVI 171774 172768 HC_gene_9210 192 - 171774 172768 -chrXVI 174707 176013 MC_gene_9211 1 - 174707 176013 -chrXVI 175849 176127 MC_gene_9212 1 - 175849 176127 -chrXVI 182447 182940 HC_gene_9213 4 - 182447 182940 -chrXVI 183009 184725 MC_gene_9214 3 - 183009 184725 -chrXVI 184880 187842 HC_gene_9215 119 - 184880 187842 -chrXVI 188069 188600 HC_gene_9216 115 - 188069 188600 -chrXVI 190950 191594 MC_gene_9217 1 - 190950 191594 -chrXVI 193498 194245 LC_gene_9218 1 - 193498 194245 -chrXVI 194253 195051 HC_gene_9219 10 - 194253 195051 -chrXVI 194358 195229 HC_gene_9220 6 - 194358 195229 -chrXVI 195364 195588 HC_gene_9221 1 - 195364 195588 -chrXVI 195532 198461 HC_gene_9222 61 - 195532 198461 -chrXVI 199412 202548 HC_gene_9223 19 - 199412 202548 -chrXVI 204035 204956 MC_gene_9224 1 - 204035 204956 -chrXVI 206174 207662 LC_gene_9225 1 - 206174 207662 -chrXVI 210045 210264 LC_gene_9226 1 - 210045 210264 -chrXVI 210538 211070 MC_gene_9227 1 - 210538 211070 -chrXVI 211115 211829 LC_gene_9228 1 - 211115 211829 -chrXVI 212925 214109 HC_gene_9229 223 - 212925 214109 -chrXVI 215343 215654 HC_gene_9230 1 - 215343 215654 -chrXVI 215710 218391 HC_gene_9231 20 - 215710 218391 -chrXVI 218547 222895 HC_gene_9232 4 - 218547 222895 -chrXVI 224194 225880 HC_gene_9233 19 - 224194 225880 -chrXVI 226030 226505 HC_gene_9234 11 - 226030 226505 -chrXVI 228836 230875 HC_gene_9235 43 - 228836 230875 -chrXVI 232484 233445 HC_gene_9236 2 - 232484 233445 -chrXVI 233040 237154 HC_gene_9237 5 - 233040 237154 -chrXVI 239041 241548 HC_gene_9238 1 - 239041 241548 -chrXVI 241584 244082 HC_gene_9239 217 - 241584 244082 -chrXVI 244222 246253 HC_gene_9240 10 - 244222 246253 -chrXVI 250597 251787 HC_gene_9241 39 - 250597 251787 -chrXVI 251967 254381 HC_gene_9242 33 - 251967 254381 -chrXVI 254403 256818 HC_gene_9243 67 - 254403 256818 -chrXVI 256756 259403 HC_gene_9244 12 - 256756 259403 -chrXVI 259577 261200 HC_gene_9245 324 - 259577 261200 -chrXVI 261545 264374 HC_gene_9246 2 - 261545 264374 -chrXVI 266010 267791 HC_gene_9247 31 - 266010 267791 -chrXVI 270924 272953 HC_gene_9248 23 - 270924 272953 -chrXVI 273693 274534 LC_gene_9249 1 - 273693 274534 -chrXVI 275862 277561 HC_gene_9250 142 - 275862 277561 -chrXVI 277970 279948 HC_gene_9251 147 - 277970 279948 -chrXVI 280392 280651 LC_gene_9252 1 - 280392 280651 -chrXVI 280952 281533 HC_gene_9253 51 - 280952 281533 -chrXVI 282671 282970 LC_gene_9254 1 - 282671 282970 -chrXVI 283228 286308 HC_gene_9255 8 - 283228 286308 -chrXVI 287327 289263 HC_gene_9256 3 - 287327 289263 -chrXVI 289476 291101 HC_gene_9257 51 - 289476 291101 -chrXVI 291150 292442 HC_gene_9258 39 - 291150 292442 -chrXVI 292648 297303 HC_gene_9259 18 - 292648 297303 -chrXVI 298467 299524 HC_gene_9260 44 - 298467 299524 -chrXVI 299740 301359 HC_gene_9261 16 - 299740 301359 -chrXVI 306252 308309 HC_gene_9262 16 - 306252 308309 -chrXVI 308415 309640 HC_gene_9263 140 - 308415 309640 -chrXVI 317427 318989 HC_gene_9264 19 - 317427 318989 -chrXVI 319149 320794 HC_gene_9265 22 - 319149 320794 -chrXVI 323765 326325 MC_gene_9266 2 - 323765 326325 -chrXVI 327804 328904 HC_gene_9267 276 - 327804 328904 -chrXVI 331718 334540 HC_gene_9268 1 - 331718 334540 -chrXVI 331853 335709 HC_gene_9269 3 - 331853 335709 -chrXVI 335812 337176 HC_gene_9270 5 - 335812 337176 -chrXVI 337316 338711 HC_gene_9271 63 - 337316 338711 -chrXVI 339497 340524 LC_gene_9272 1 - 339497 340524 -chrXVI 340961 344939 HC_gene_9273 7 - 340961 344939 -chrXVI 344897 347467 HC_gene_9274 3 - 344897 347467 -chrXVI 347566 348284 HC_gene_9275 13 - 347566 348284 -chrXVI 349107 349633 LC_gene_9276 1 - 349107 349633 -chrXVI 349839 352321 HC_gene_9277 650 - 349839 352321 -chrXVI 352747 355436 HC_gene_9278 79 - 352747 355436 -chrXVI 357689 359426 HC_gene_9279 25 - 357689 359426 -chrXVI 363181 364095 HC_gene_9280 42 - 363181 364095 -chrXVI 364182 364785 HC_gene_9281 235 - 364182 364785 -chrXVI 366408 366788 HC_gene_9282 104 - 366408 366788 -chrXVI 368017 369475 HC_gene_9283 46 - 368017 369475 -chrXVI 369516 370682 HC_gene_9284 216 - 369516 370682 -chrXVI 372320 373083 LC_gene_9285 1 - 372320 373083 -chrXVI 375483 376546 LC_gene_9286 1 - 375483 376546 -chrXVI 377125 378425 HC_gene_9287 1901 - 377125 378425 -chrXVI 378964 381361 HC_gene_9288 72 - 378964 381361 -chrXVI 381947 382958 MC_gene_9289 1 - 381947 382958 -chrXVI 382981 383264 MC_gene_9290 1 - 382981 383264 -chrXVI 384651 386476 HC_gene_9291 63 - 384651 386476 -chrXVI 392501 393724 MC_gene_9292 1 - 392501 393724 -chrXVI 393088 393781 MC_gene_9293 2 - 393088 393781 -chrXVI 396515 398139 HC_gene_9294 15 - 396515 398139 -chrXVI 398348 404224 HC_gene_9295 13 - 398348 404224 -chrXVI 405560 406136 LC_gene_9296 1 - 405560 406136 -chrXVI 407750 408784 HC_gene_9297 457 - 407750 408784 -chrXVI 409013 410119 HC_gene_9298 2 - 409013 410119 -chrXVI 410336 411184 MC_gene_9299 2 - 410336 411184 -chrXVI 410501 411683 MC_gene_9300 2 - 410501 411683 -chrXVI 411475 412158 MC_gene_9301 1 - 411475 412158 -chrXVI 415411 415565 MC_gene_9302 1 - 415411 415565 -chrXVI 418089 419609 LC_gene_9303 1 - 418089 419609 -chrXVI 419875 420565 HC_gene_9304 99 - 419875 420565 -chrXVI 422684 423925 HC_gene_9305 49 - 422684 423925 -chrXVI 424146 425152 HC_gene_9306 35 - 424146 425152 -chrXVI 425168 426616 HC_gene_9307 44 - 425168 426616 -chrXVI 428582 429647 HC_gene_9308 80 - 428582 429647 -chrXVI 430371 430840 LC_gene_9309 1 - 430371 430840 -chrXVI 431352 431543 HC_gene_9310 7 - 431352 431543 -chrXVI 434045 434323 HC_gene_9311 6 - 434045 434323 -chrXVI 435107 435739 LC_gene_9312 1 - 435107 435739 -chrXVI 435806 435955 MC_gene_9313 1 - 435806 435955 -chrXVI 436855 438079 HC_gene_9314 1 - 436855 438079 -chrXVI 443255 443788 HC_gene_9315 3 - 443255 443788 -chrXVI 443589 443806 HC_gene_9316 1 - 443589 443806 -chrXVI 443848 444247 HC_gene_9317 4 - 443848 444247 -chrXVI 445010 445602 HC_gene_9318 16 - 445010 445602 -chrXVI 445629 450554 HC_gene_9319 4 - 445629 450554 -chrXVI 451460 453166 HC_gene_9320 120 - 451460 453166 -chrXVI 453207 455001 HC_gene_9321 17 - 453207 455001 -chrXVI 455364 456027 MC_gene_9322 1 - 455364 456027 -chrXVI 455649 456635 MC_gene_9323 2 - 455649 456635 -chrXVI 457016 458539 HC_gene_9324 110 - 457016 458539 -chrXVI 459140 459804 MC_gene_9325 1 - 459140 459804 -chrXVI 460613 462154 HC_gene_9326 87 - 460613 462154 -chrXVI 462306 464123 HC_gene_9327 132 - 462306 464123 -chrXVI 465659 466966 HC_gene_9328 39 - 465659 466966 -chrXVI 467701 469639 LC_gene_9329 1 - 467701 469639 -chrXVI 472225 472682 HC_gene_9330 1 - 472225 472682 -chrXVI 472929 474962 HC_gene_9331 32 - 472929 474962 -chrXVI 474881 475748 HC_gene_9332 6 - 474881 475748 -chrXVI 475918 478990 HC_gene_9333 2 - 475918 478990 -chrXVI 481364 481932 HC_gene_9334 1891 - 481364 481932 -chrXVI 482220 482884 MC_gene_9335 1 - 482220 482884 -chrXVI 482455 483434 MC_gene_9336 1 - 482455 483434 -chrXVI 483061 486216 MC_gene_9337 1 - 483061 486216 -chrXVI 486514 487138 LC_gene_9338 1 - 486514 487138 -chrXVI 487224 488255 LC_gene_9339 1 - 487224 488255 -chrXVI 488571 491566 HC_gene_9340 51 - 488571 491566 -chrXVI 491396 493333 HC_gene_9341 78 - 491396 493333 -chrXVI 495718 497674 LC_gene_9342 1 - 495718 497674 -chrXVI 497965 498607 MC_gene_9343 1 - 497965 498607 -chrXVI 499257 500218 MC_gene_9344 1 - 499257 500218 -chrXVI 500419 502250 HC_gene_9345 66 - 500419 502250 -chrXVI 502255 503247 LC_gene_9346 1 - 502255 503247 -chrXVI 504201 506440 HC_gene_9347 25 - 504201 506440 -chrXVI 510003 510637 MC_gene_9348 1 - 510003 510637 -chrXVI 512255 514288 HC_gene_9349 26 - 512255 514288 -chrXVI 514429 516361 HC_gene_9350 9 - 514429 516361 -chrXVI 516422 517154 HC_gene_9351 2 - 516422 517154 -chrXVI 517541 520225 HC_gene_9352 3 - 517541 520225 -chrXVI 521168 522119 LC_gene_9353 1 - 521168 522119 -chrXVI 524990 525479 MC_gene_9354 1 - 524990 525479 -chrXVI 525484 526934 HC_gene_9355 112 - 525484 526934 -chrXVI 528660 529370 HC_gene_9356 377 - 528660 529370 -chrXVI 533514 534738 HC_gene_9357 45 - 533514 534738 -chrXVI 535609 538960 HC_gene_9358 112 - 535609 538960 -chrXVI 541980 543895 HC_gene_9359 13 - 541980 543895 -chrXVI 545547 548262 LC_gene_9360 1 - 545547 548262 -chrXVI 550331 551719 HC_gene_9361 911 - 550331 551719 -chrXVI 552531 554360 HC_gene_9362 41 - 552531 554360 -chrXVI 554483 555105 LC_gene_9363 1 - 554483 555105 -chrXVI 556228 557327 MC_gene_9364 2 - 556228 557327 -chrXVI 557109 557504 MC_gene_9365 1 - 557109 557504 -chrXVI 557848 558344 MC_gene_9366 1 - 557848 558344 -chrXVI 560034 560287 MC_gene_9367 1 - 560034 560287 -chrXVI 560653 561131 HC_gene_9368 26 - 560653 561131 -chrXVI 561154 562317 MC_gene_9369 1 - 561154 562317 -chrXVI 563128 563833 HC_gene_9370 9 - 563128 563833 -chrXVI 563850 564486 HC_gene_9371 21 - 563850 564486 -chrXVI 563949 565056 HC_gene_9372 147 - 563949 565056 -chrXVI 565452 566902 HC_gene_9373 27 - 565452 566902 -chrXVI 566724 567958 HC_gene_9374 54 - 566724 567958 -chrXVI 569110 571087 HC_gene_9375 2 - 569110 571087 -chrXVI 571394 572109 LC_gene_9376 1 - 571394 572109 -chrXVI 575121 575498 HC_gene_9377 2 - 575121 575498 -chrXVI 575543 575914 HC_gene_9378 6 - 575543 575914 -chrXVI 577307 581230 HC_gene_9379 163 - 577307 581230 -chrXVI 582221 582779 HC_gene_9380 230 - 582221 582779 -chrXVI 582850 584152 HC_gene_9381 26 - 582850 584152 -chrXVI 584227 585935 HC_gene_9382 37 - 584227 585935 -chrXVI 584530 586255 HC_gene_9383 2 - 584530 586255 -chrXVI 586418 586923 LC_gene_9384 1 - 586418 586923 -chrXVI 587387 588133 LC_gene_9385 1 - 587387 588133 -chrXVI 588426 589905 LC_gene_9386 1 - 588426 589905 -chrXVI 590132 591115 HC_gene_9387 13 - 590132 591115 -chrXVI 592187 593162 HC_gene_9388 458 - 592187 593162 -chrXVI 593221 594085 HC_gene_9389 85 - 593221 594085 -chrXVI 596289 596479 MC_gene_9390 1 - 596289 596479 -chrXVI 600235 600441 MC_gene_9391 1 - 600235 600441 -chrXVI 600577 603587 HC_gene_9392 8 - 600577 603587 -chrXVI 603722 607354 HC_gene_9393 7 - 603722 607354 -chrXVI 607914 608251 MC_gene_9394 1 - 607914 608251 -chrXVI 608388 610072 HC_gene_9395 125 - 608388 610072 -chrXVI 613244 614579 HC_gene_9396 68 - 613244 614579 -chrXVI 615510 616288 MC_gene_9397 1 - 615510 616288 -chrXVI 619635 619959 HC_gene_9398 5 - 619635 619959 -chrXVI 621772 622356 MC_gene_9399 1 - 621772 622356 -chrXVI 622409 622611 LC_gene_9400 1 - 622409 622611 -chrXVI 622723 623168 LC_gene_9401 1 - 622723 623168 -chrXVI 624265 627023 HC_gene_9402 15 - 624265 627023 -chrXVI 628391 629041 HC_gene_9403 1 - 628391 629041 -chrXVI 637251 639006 HC_gene_9404 378 - 637251 639006 -chrXVI 640266 641088 MC_gene_9405 1 - 640266 641088 -chrXVI 642790 643303 LC_gene_9406 1 - 642790 643303 -chrXVI 643748 644964 HC_gene_9407 2 - 643748 644964 -chrXVI 645277 646102 MC_gene_9408 1 - 645277 646102 -chrXVI 646367 647089 HC_gene_9409 171 - 646367 647089 -chrXVI 647981 648339 MC_gene_9410 1 - 647981 648339 -chrXVI 649970 653787 HC_gene_9411 4 - 649970 653787 -chrXVI 655027 656611 HC_gene_9412 37 - 655027 656611 -chrXVI 657294 658044 LC_gene_9413 1 - 657294 658044 -chrXVI 658455 658976 LC_gene_9414 1 - 658455 658976 -chrXVI 661050 664741 HC_gene_9415 3 - 661050 664741 -chrXVI 665493 667437 HC_gene_9416 823 - 665493 667437 -chrXVI 669220 670879 LC_gene_9417 1 - 669220 670879 -chrXVI 671421 672060 MC_gene_9418 2 - 671421 672060 -chrXVI 672361 673226 LC_gene_9419 1 - 672361 673226 -chrXVI 673438 674404 MC_gene_9420 1 - 673438 674404 -chrXVI 674688 675664 HC_gene_9421 126 - 674688 675664 -chrXVI 675893 676930 HC_gene_9422 17 - 675893 676930 -chrXVI 677502 678372 HC_gene_9423 397 - 677502 678372 -chrXVI 677601 678697 HC_gene_9424 1 - 677601 678697 -chrXVI 678724 679285 LC_gene_9425 1 - 678724 679285 -chrXVI 679651 680825 MC_gene_9426 1 - 679651 680825 -chrXVI 680998 681803 HC_gene_9427 4 - 680998 681803 -chrXVI 682740 684353 HC_gene_9428 6 - 682740 684353 -chrXVI 684488 685475 HC_gene_9429 561 - 684488 685475 -chrXVI 690624 692481 HC_gene_9430 220 - 690624 692481 -chrXVI 692647 694904 HC_gene_9431 739 - 692647 694904 -chrXVI 695614 696874 HC_gene_9432 62 - 695614 696874 -chrXVI 696966 697326 HC_gene_9433 5 - 696966 697326 -chrXVI 699378 699986 MC_gene_9434 1 - 699378 699986 -chrXVI 700036 700340 LC_gene_9435 1 - 700036 700340 -chrXVI 702348 704156 HC_gene_9436 3 - 702348 704156 -chrXVI 704092 704697 HC_gene_9437 161 - 704092 704697 -chrXVI 708306 709916 HC_gene_9438 15 - 708306 709916 -chrXVI 711327 713065 HC_gene_9439 170 - 711327 713065 -chrXVI 715801 718497 HC_gene_9440 35 - 715801 718497 -chrXVI 718631 719375 HC_gene_9441 64 - 718631 719375 -chrXVI 719428 720489 HC_gene_9442 19 - 719428 720489 -chrXVI 720935 724965 HC_gene_9443 2 - 720935 724965 -chrXVI 728549 730202 HC_gene_9444 128 - 728549 730202 -chrXVI 730451 731778 HC_gene_9445 2 - 730451 731778 -chrXVI 731130 731849 HC_gene_9446 3003 - 731130 731849 -chrXVI 733297 736712 HC_gene_9447 20 - 733297 736712 -chrXVI 736910 739634 HC_gene_9448 9 - 736910 739634 -chrXVI 741298 742149 HC_gene_9449 70 - 741298 742149 -chrXVI 745609 746850 HC_gene_9450 382 - 745609 746850 -chrXVI 749150 751972 HC_gene_9451 33 - 749150 751972 -chrXVI 753528 753844 MC_gene_9452 1 - 753528 753844 -chrXVI 756613 758228 LC_gene_9453 1 - 756613 758228 -chrXVI 758919 759462 MC_gene_9454 1 - 758919 759462 -chrXVI 764924 765821 LC_gene_9455 1 - 764924 765821 -chrXVI 766443 767531 MC_gene_9456 1 - 766443 767531 -chrXVI 767518 768991 LC_gene_9457 1 - 767518 768991 -chrXVI 769490 770543 HC_gene_9458 8 - 769490 770543 -chrXVI 773728 775429 HC_gene_9459 61 - 773728 775429 -chrXVI 776210 776959 HC_gene_9460 14 - 776210 776959 -chrXVI 777146 777734 LC_gene_9461 1 - 777146 777734 -chrXVI 780270 781687 HC_gene_9462 45 - 780270 781687 -chrXVI 781326 781743 HC_gene_9463 101 - 781326 781743 -chrXVI 785496 786580 LC_gene_9464 1 - 785496 786580 -chrXVI 786821 787650 HC_gene_9465 14 - 786821 787650 -chrXVI 789431 790373 MC_gene_9466 1 - 789431 790373 -chrXVI 791122 792437 HC_gene_9467 25 - 791122 792437 -chrXVI 793717 794536 HC_gene_9468 76 - 793717 794536 -chrXVI 795884 797296 HC_gene_9469 68 - 795884 797296 -chrXVI 797739 799031 MC_gene_9470 2 - 797739 799031 -chrXVI 799733 800595 MC_gene_9471 1 - 799733 800595 -chrXVI 801559 801754 MC_gene_9472 1 - 801559 801754 -chrXVI 804406 810310 MC_gene_9473 1 - 804406 810310 -chrXVI 810841 812679 HC_gene_9474 30 - 810841 812679 -chrXVI 813039 814117 HC_gene_9475 83 - 813039 814117 -chrXVI 815562 818081 HC_gene_9476 9 - 815562 818081 -chrXVI 819694 821459 HC_gene_9477 31 - 819694 821459 -chrXVI 824352 824948 HC_gene_9478 19 - 824352 824948 -chrXVI 824963 826606 HC_gene_9479 44 - 824963 826606 -chrXVI 826709 828215 HC_gene_9480 177 - 826709 828215 -chrXVI 828386 830421 HC_gene_9481 10 - 828386 830421 -chrXVI 831042 831644 MC_gene_9482 1 - 831042 831644 -chrXVI 831661 833484 HC_gene_9483 22 - 831661 833484 -chrXVI 831838 834231 HC_gene_9484 1 - 831838 834231 -chrXVI 835453 837480 HC_gene_9485 10 - 835453 837480 -chrXVI 837584 840064 HC_gene_9486 49 - 837584 840064 -chrXVI 840079 840797 MC_gene_9487 1 - 840079 840797 -chrXVI 842701 842974 LC_gene_9488 1 - 842701 842974 -chrXVI 844057 845201 MC_gene_9489 1 - 844057 845201 -chrXVI 850569 852455 MC_gene_9490 1 - 850569 852455 -chrXVI 855537 856286 MC_gene_9491 1 - 855537 856286 -chrXVI 859976 860583 LC_gene_9492 1 - 859976 860583 -chrXVI 862218 864080 HC_gene_9493 1 - 862218 864080 -chrXVI 864103 866494 HC_gene_9494 29 - 864103 866494 -chrXVI 866673 868324 HC_gene_9495 15 - 866673 868324 -chrXVI 868474 870042 HC_gene_9496 903 - 868474 870042 -chrXVI 874001 875122 LC_gene_9497 1 - 874001 875122 -chrXVI 876103 876680 HC_gene_9498 189 - 876103 876680 -chrXVI 876788 877683 HC_gene_9499 86 - 876788 877683 -chrXVI 877973 878416 LC_gene_9500 1 - 877973 878416 -chrXVI 881048 881934 MC_gene_9501 1 - 881048 881934 -chrXVI 881495 882043 MC_gene_9502 1 - 881495 882043 -chrXVI 882130 882581 HC_gene_9503 1 - 882130 882581 -chrXVI 882600 883002 MC_gene_9504 1 - 882600 883002 -chrXVI 883063 883584 MC_gene_9505 1 - 883063 883584 -chrXVI 883728 884197 LC_gene_9506 1 - 883728 884197 -chrXVI 885092 886107 MC_gene_9507 1 - 885092 886107 -chrXVI 886179 887870 HC_gene_9508 112 - 886179 887870 -chrXVI 887919 888729 HC_gene_9509 8 - 887919 888729 -chrXVI 890948 892085 HC_gene_9510 64 - 890948 892085 -chrXVI 893712 895775 HC_gene_9511 34 - 893712 895775 -chrXVI 896940 899724 HC_gene_9512 236 - 896940 899724 -chrXVI 900527 900904 HC_gene_9513 1 - 900527 900904 -chrXVI 900927 901549 MC_gene_9514 1 - 900927 901549 -chrXVI 909538 911028 HC_gene_9515 22 - 909538 911028 -chrXVI 911888 912489 HC_gene_9516 155 - 911888 912489 -chrXVI 916971 919072 HC_gene_9517 31 - 916971 919072 -chrXVI 920293 920629 LC_gene_9518 1 - 920293 920629 -chrXVI 921035 923570 MC_gene_9519 1 - 921035 923570 -chrXVI 923569 923984 HC_gene_9520 2 - 923569 923984 -chrXVI 924114 927328 HC_gene_9521 2 - 924114 927328 -chrXVI 927120 928263 HC_gene_9522 7 - 927120 928263 -chrXVI 930120 931252 HC_gene_9523 11 - 930120 931252 -chrXVI 933746 934745 LC_gene_9524 1 - 933746 934745 -chrXVI 935866 936890 HC_gene_9525 9 - 935866 936890 -chrXVI 935938 937398 HC_gene_9526 2 - 935938 937398 -chrXVI 938032 939044 HC_gene_9527 100 - 938032 939044 -chrXVI 939199 941182 HC_gene_9528 14 - 939199 941182 -chrXVI 942874 947043 LC_gene_9529 1 - 942874 947043 -chrM 6545 6963 MC_gene_9530 1 + 6545 6963 -chrM 13986 14544 MC_gene_9531 1 + 13986 14544 -chrM 32231 32550 MC_gene_9532 1 + 32231 32550 -chrM 59348 59647 MC_gene_9533 1 + 59348 59647 -chrM 60145 62146 MC_gene_9534 1 + 60145 62146 -chrM 60523 62331 MC_gene_9535 1 + 60523 62331 diff --git a/results/2022-1201/files_features/Ivanov-et-al/called_yeast_genes_with_flanks.bed b/results/2022-1201/files_features/Ivanov-et-al/called_yeast_genes_with_flanks.bed deleted file mode 100644 index fe0dcc2..0000000 --- a/results/2022-1201/files_features/Ivanov-et-al/called_yeast_genes_with_flanks.bed +++ /dev/null @@ -1,9535 +0,0 @@ -chrI 6546 7207 HC_gene_0001 1 + 6546 7207 -chrI 8387 9052 MC_gene_0002 1 + 8387 9052 -chrI 9332 9915 MC_gene_0003 2 + 9332 9915 -chrI 11327 15815 MC_gene_0004 2 + 11327 15815 -chrI 15659 16299 MC_gene_0005 1 + 15659 16299 -chrI 16973 18276 MC_gene_0006 1 + 16973 18276 -chrI 19905 22110 LC_gene_0007 1 + 19905 22110 -chrI 22779 23792 MC_gene_0008 1 + 22779 23792 -chrI 23994 24555 LC_gene_0009 1 + 23994 24555 -chrI 24836 28122 HC_gene_0010 1 + 24836 28122 -chrI 30116 31150 MC_gene_0011 1 + 30116 31150 -chrI 31222 31589 HC_gene_0012 35 + 31222 31589 -chrI 31240 33027 HC_gene_0013 10 + 31240 33027 -chrI 33357 35035 HC_gene_0014 33 + 33357 34844 -chrI 35105 36414 HC_gene_0015 161 + 35105 36390 -chrI 36523 37367 HC_gene_0016 148 + 36523 37367 -chrI 37413 39167 HC_gene_0017 25 + 37413 39107 -chrI 39203 42059 HC_gene_0018 29 + 39203 42020 -chrI 42153 42828 HC_gene_0019 90 + 42153 42821 -chrI 43467 45587 HC_gene_0020 5 + 43467 45587 -chrI 45809 48476 HC_gene_0021 74 + 45809 48316 -chrI 48549 51931 HC_gene_0022 10 + 48549 51859 -chrI 52867 53307 LC_gene_0023 1 + 52867 53307 -chrI 54315 55065 MC_gene_0024 1 + 54315 55065 -chrI 57504 57982 HC_gene_0025 135 + 57504 57963 -chrI 57982 58702 LC_gene_0026 1 + 57982 58702 -chrI 61298 62743 HC_gene_0027 220 + 61298 62657 -chrI 62775 65599 HC_gene_0028 11 + 62775 65479 -chrI 68701 69835 MC_gene_0029 1 + 68701 69826 -chrI 70029 70580 HC_gene_0030 1 + 70029 70580 -chrI 71706 73881 HC_gene_0031 9018 + 71706 73454 -chrI 73919 74911 HC_gene_0032 4 + 73919 74911 -chrI 76399 79588 HC_gene_0033 290 + 76399 79562 -chrI 79687 80745 HC_gene_0034 1 + 79687 80745 -chrI 82259 82595 MC_gene_0035 1 + 82259 82589 -chrI 82699 83577 HC_gene_0036 113 + 82699 83304 -chrI 84251 85460 LC_gene_0037 1 + 84251 85460 -chrI 87262 87859 HC_gene_0038 146 + 87262 87857 -chrI 92857 94534 HC_gene_0039 21 + 92857 94530 -chrI 94605 95579 HC_gene_0040 42 + 94605 95579 -chrI 99456 100121 LC_gene_0041 1 + 99456 100121 -chrI 110201 111050 MC_gene_0042 1 + 110201 111050 -chrI 114807 118435 HC_gene_0043 6 + 114807 118397 -chrI 119076 119703 LC_gene_0044 1 + 119076 119703 -chrI 119856 124497 HC_gene_0045 5 + 119856 124497 -chrI 124780 126876 HC_gene_0046 66 + 124780 126870 -chrI 127385 128190 LC_gene_0047 1 + 127385 128190 -chrI 129236 130591 HC_gene_0048 73 + 129236 130589 -chrI 130733 132163 HC_gene_0049 903 + 130733 132084 -chrI 132194 134211 HC_gene_0050 4 + 132194 134174 -chrI 135827 136760 HC_gene_0051 62 + 135827 136760 -chrI 136872 137647 HC_gene_0052 181 + 136872 137645 -chrI 139450 141609 LC_gene_0053 1 + 139450 141609 -chrI 141947 143530 HC_gene_0054 3501 + 141947 143383 -chrI 143616 147652 HC_gene_0055 3 + 143616 147588 -chrI 151807 152195 MC_gene_0056 1 + 151807 152195 -chrI 152214 154206 HC_gene_0057 42 + 152214 154067 -chrI 154956 156909 HC_gene_0058 38 + 154956 156864 -chrI 158862 159951 HC_gene_0059 56 + 158862 159919 -chrI 160161 160792 LC_gene_0060 1 + 160161 160792 -chrI 165190 166168 MC_gene_0061 1 + 165190 166168 -chrI 169323 170643 HC_gene_0062 490 + 169323 170416 -chrI 170954 172274 MC_gene_0063 1 + 170954 172274 -chrI 175310 176564 HC_gene_0064 10 + 175310 176564 -chrI 177622 179482 LC_gene_0065 1 + 177622 179482 -chrI 180249 180790 HC_gene_0066 3 + 180249 180790 -chrI 181162 181477 MC_gene_0067 1 + 181162 181379 -chrI 181477 182129 LC_gene_0068 1 + 181477 182129 -chrI 188053 188968 MC_gene_0069 1 + 188053 188908 -chrI 1678 3954 LC_gene_0070 1 - 1678 3954 -chrI 4977 6332 HC_gene_0071 1 - 4977 6332 -chrI 7005 9198 MC_gene_0072 1 - 7005 9198 -chrI 9875 10533 LC_gene_0073 1 - 9875 10533 -chrI 10662 11059 LC_gene_0074 1 - 10662 11059 -chrI 11413 14344 LC_gene_0075 1 - 11413 14344 -chrI 16781 18908 MC_gene_0076 1 - 16781 18908 -chrI 22394 23620 MC_gene_0077 1 - 22394 23620 -chrI 23908 24727 HC_gene_0078 1 - 23908 24727 -chrI 28031 29777 HC_gene_0079 1 - 28031 29777 -chrI 30210 30782 MC_gene_0080 1 - 30210 30782 -chrI 31056 31600 HC_gene_0081 19 - 31056 31600 -chrI 32343 34373 HC_gene_0082 4 - 32917 34373 -chrI 35704 36326 LC_gene_0083 1 - 35756 36326 -chrI 36991 38981 LC_gene_0084 1 - 37214 38981 -chrI 42102 42703 LC_gene_0085 1 - 42102 42703 -chrI 42703 43600 HC_gene_0086 57 - 42715 43600 -chrI 45052 45673 MC_gene_0087 1 - 45052 45673 -chrI 51724 54791 HC_gene_0088 90 - 51771 54791 -chrI 54925 56887 HC_gene_0089 4 - 54931 56887 -chrI 56907 57384 HC_gene_0090 93 - 56908 57384 -chrI 57590 58477 HC_gene_0091 544 - 57728 58477 -chrI 58503 61059 HC_gene_0092 15 - 58617 61059 -chrI 62581 63194 LC_gene_0093 1 - 62581 63194 -chrI 65332 67845 HC_gene_0094 38 - 65380 67845 -chrI 67906 68541 LC_gene_0095 1 - 67940 68541 -chrI 68549 69582 HC_gene_0096 165 - 68640 69582 -chrI 70220 71510 MC_gene_0097 1 - 70220 71510 -chrI 73615 74807 LC_gene_0098 1 - 73615 74807 -chrI 74807 76184 HC_gene_0099 154 - 74844 76184 -chrI 80531 82563 HC_gene_0100 31 - 80565 82563 -chrI 83209 84495 HC_gene_0101 24 - 83209 84495 -chrI 84528 87079 HC_gene_0102 10 - 84585 87079 -chrI 87599 92523 HC_gene_0103 24 - 87688 92523 -chrI 95441 99784 HC_gene_0104 32 - 95480 99784 -chrI 99822 101169 HC_gene_0105 293 - 100038 101169 -chrI 101313 105967 HC_gene_0106 1 - 101367 105967 -chrI 106017 108624 HC_gene_0107 171 - 106140 108624 -chrI 108772 110447 HC_gene_0108 24 - 108833 110447 -chrI 110534 113403 HC_gene_0109 27 - 110612 113403 -chrI 113483 114620 HC_gene_0110 48 - 113533 114620 -chrI 118425 119576 MC_gene_0111 1 - 118425 119576 -chrI 126752 128103 HC_gene_0112 51 - 126752 128103 -chrI 128078 129087 HC_gene_0113 63 - 128078 129087 -chrI 130698 131133 MC_gene_0114 1 - 130698 131133 -chrI 134071 135703 HC_gene_0115 9 - 134073 135703 -chrI 136813 137249 LC_gene_0116 1 - 136813 137249 -chrI 137249 138417 HC_gene_0117 277 - 137520 138417 -chrI 138667 139023 MC_gene_0118 1 - 138667 139023 -chrI 139263 141494 HC_gene_0119 759 - 139330 141494 -chrI 143622 144079 LC_gene_0120 1 - 143622 144079 -chrI 147499 151204 HC_gene_0121 21 - 147512 151204 -chrI 151602 151934 LC_gene_0122 1 - 151602 151934 -chrI 153796 154741 HC_gene_0123 377 - 153983 154741 -chrI 155608 156721 LC_gene_0124 1 - 155608 156721 -chrI 156678 158662 HC_gene_0125 36 - 156678 158662 -chrI 159795 161341 HC_gene_0126 3 - 159795 161341 -chrI 166360 169021 HC_gene_0127 74 - 166562 169021 -chrI 169127 169971 LC_gene_0128 1 - 169127 169971 -chrI 170141 171711 HC_gene_0129 26 - 170180 171711 -chrI 172060 175136 HC_gene_0130 2 - 172123 175136 -chrI 175740 176218 LC_gene_0131 1 - 175740 176218 -chrI 179205 180052 HC_gene_0132 3 - 179219 180052 -chrI 180098 180825 MC_gene_0133 1 - 180098 180825 -chrI 182378 182597 LC_gene_0134 1 - 182378 182597 -chrII 544 2854 LC_gene_0135 1 + 544 2854 -chrII 3836 5881 MC_gene_0136 1 + 3836 5881 -chrII 8436 9394 LC_gene_0137 1 + 8436 9394 -chrII 9781 10065 LC_gene_0138 1 + 9781 10065 -chrII 10974 13983 MC_gene_0139 1 + 10974 13983 -chrII 23978 25045 HC_gene_0140 185 + 23978 24962 -chrII 28495 29054 MC_gene_0141 1 + 28495 29054 -chrII 28686 29228 MC_gene_0142 1 + 28686 29214 -chrII 29452 29963 MC_gene_0143 2 + 29452 29963 -chrII 30818 35553 LC_gene_0144 1 + 30818 35553 -chrII 36755 38966 HC_gene_0145 530 + 36755 38957 -chrII 39113 40668 HC_gene_0146 36 + 39113 40662 -chrII 40811 44444 HC_gene_0147 28 + 40811 44209 -chrII 45614 46561 HC_gene_0148 5213 + 45614 46521 -chrII 46581 47275 HC_gene_0149 1 + 46581 47275 -chrII 48792 49513 HC_gene_0150 80 + 48792 49478 -chrII 49556 51263 HC_gene_0151 14 + 49556 51263 -chrII 59716 60189 LC_gene_0152 1 + 59716 60189 -chrII 63738 66998 HC_gene_0153 44 + 63738 66931 -chrII 68899 69693 LC_gene_0154 1 + 68899 69693 -chrII 71564 73214 HC_gene_0155 45 + 71564 73111 -chrII 75194 79926 HC_gene_0156 17 + 75194 79848 -chrII 84633 86592 LC_gene_0157 1 + 84633 86592 -chrII 88047 88557 HC_gene_0158 10 + 88047 88281 -chrII 89941 90671 HC_gene_0159 88 + 89941 90671 -chrII 90683 92247 HC_gene_0160 52 + 90683 92210 -chrII 92343 93681 HC_gene_0161 81 + 92343 93681 -chrII 96431 97608 LC_gene_0162 1 + 96431 97608 -chrII 99149 100301 LC_gene_0163 1 + 99149 100301 -chrII 101867 105346 HC_gene_0164 2 + 101867 105346 -chrII 107912 109998 HC_gene_0165 10 + 107912 109959 -chrII 110698 113043 HC_gene_0166 191 + 110698 112831 -chrII 113678 119398 HC_gene_0167 300 + 113678 119328 -chrII 121358 122461 MC_gene_0168 1 + 121358 122461 -chrII 125046 126467 HC_gene_0169 133 + 125046 126182 -chrII 126604 127509 HC_gene_0170 14 + 126604 127509 -chrII 128332 129732 MC_gene_0171 1 + 128332 129732 -chrII 132424 133935 HC_gene_0172 42 + 132424 133935 -chrII 136105 137648 HC_gene_0173 45 + 136105 137648 -chrII 137939 141041 LC_gene_0174 1 + 137939 141041 -chrII 141031 142290 HC_gene_0175 536 + 141031 142114 -chrII 143186 143724 HC_gene_0176 80 + 143186 143708 -chrII 146135 147076 HC_gene_0177 152 + 146135 147067 -chrII 147109 150429 HC_gene_0178 8 + 147109 150427 -chrII 150714 151484 LC_gene_0179 1 + 150714 151484 -chrII 152684 153734 LC_gene_0180 1 + 152684 153734 -chrII 155116 157040 LC_gene_0181 1 + 155116 157040 -chrII 160093 161543 HC_gene_0182 137 + 160093 161533 -chrII 161676 162878 HC_gene_0183 8 + 161676 162878 -chrII 164472 165023 MC_gene_0184 1 + 164472 165023 -chrII 165638 166804 HC_gene_0185 9 + 165638 166449 -chrII 167146 167514 HC_gene_0186 9 + 167146 167453 -chrII 168390 169863 HC_gene_0187 3757 + 168390 169465 -chrII 170347 171333 HC_gene_0188 254 + 170347 171166 -chrII 171416 172454 HC_gene_0189 28 + 171416 172436 -chrII 172509 174966 HC_gene_0190 84 + 172509 174876 -chrII 175877 177630 LC_gene_0191 1 + 175877 177630 -chrII 182317 184271 HC_gene_0192 26 + 182317 184216 -chrII 184319 186226 HC_gene_0193 7 + 184319 186027 -chrII 186830 187469 LC_gene_0194 1 + 186830 187469 -chrII 191977 192393 HC_gene_0195 1 + 191977 192393 -chrII 192421 193945 HC_gene_0196 135 + 192421 193648 -chrII 194043 195967 HC_gene_0197 3 + 194043 195871 -chrII 196328 196711 HC_gene_0198 8 + 196328 196711 -chrII 197949 198657 LC_gene_0199 1 + 197949 198657 -chrII 198901 201339 LC_gene_0200 1 + 198901 201339 -chrII 201988 206117 HC_gene_0201 48 + 201988 206072 -chrII 207158 209438 HC_gene_0202 11 + 207158 209352 -chrII 209574 212205 HC_gene_0203 5 + 209574 212202 -chrII 216727 217355 MC_gene_0204 1 + 216727 217355 -chrII 217406 221060 HC_gene_0205 3 + 217406 221035 -chrII 222909 227004 MC_gene_0206 3 + 222909 226968 -chrII 227527 231126 HC_gene_0207 7 + 227527 230694 -chrII 231511 231940 MC_gene_0208 1 + 231511 231940 -chrII 231623 232828 MC_gene_0209 1 + 231623 232828 -chrII 233030 233718 HC_gene_0210 1 + 233030 233507 -chrII 234244 235417 HC_gene_0211 54 + 234244 235293 -chrII 236069 236400 MC_gene_0212 1 + 236069 236400 -chrII 236467 237555 HC_gene_0213 1892 + 236467 237082 -chrII 238521 239011 HC_gene_0214 18 + 238521 238977 -chrII 239517 241413 LC_gene_0215 1 + 239517 241413 -chrII 241672 242179 MC_gene_0216 1 + 241672 242179 -chrII 242775 244563 HC_gene_0217 43 + 242775 244475 -chrII 245874 246699 HC_gene_0218 102 + 245874 246699 -chrII 246877 248646 HC_gene_0219 56 + 246877 248646 -chrII 249355 250291 MC_gene_0220 1 + 249355 250291 -chrII 251715 252349 HC_gene_0221 13 + 251715 252282 -chrII 254629 255040 MC_gene_0222 1 + 254629 255040 -chrII 255071 255400 LC_gene_0223 1 + 255071 255286 -chrII 256301 257300 HC_gene_0224 2981 + 256301 257100 -chrII 258262 259001 MC_gene_0225 1 + 258262 259001 -chrII 259828 265463 LC_gene_0226 1 + 259828 265463 -chrII 265775 266296 LC_gene_0227 1 + 265775 266229 -chrII 266908 267367 LC_gene_0228 1 + 266908 267367 -chrII 270215 271034 HC_gene_0229 301 + 270215 270958 -chrII 276814 283501 HC_gene_0230 1 + 276814 283501 -chrII 281305 283553 HC_gene_0231 6 + 281305 283515 -chrII 283674 284476 HC_gene_0232 52 + 283674 284430 -chrII 288299 288902 HC_gene_0233 3 + 288299 288829 -chrII 289334 290740 HC_gene_0234 57 + 289334 290680 -chrII 291926 292612 MC_gene_0235 1 + 291926 292474 -chrII 292632 292970 HC_gene_0236 1 + 292632 292826 -chrII 296057 296386 MC_gene_0237 1 + 296057 296386 -chrII 296280 297342 MC_gene_0238 1 + 296280 297342 -chrII 298060 300120 HC_gene_0239 16 + 298060 300098 -chrII 300148 301963 HC_gene_0240 3731 + 300148 301963 -chrII 303878 304795 HC_gene_0241 5 + 303878 304795 -chrII 306270 307420 MC_gene_0242 1 + 306270 307420 -chrII 307595 309092 HC_gene_0243 212 + 307595 309021 -chrII 311845 315058 HC_gene_0244 32 + 311845 314976 -chrII 315537 316815 HC_gene_0245 394 + 315537 316692 -chrII 316815 318065 LC_gene_0246 1 + 316815 318065 -chrII 318211 320423 HC_gene_0247 36 + 318211 320414 -chrII 322195 322965 LC_gene_0248 1 + 322195 322965 -chrII 324766 325611 LC_gene_0249 1 + 324766 325611 -chrII 326315 326806 MC_gene_0250 1 + 326315 326806 -chrII 327529 328363 LC_gene_0251 1 + 327529 328363 -chrII 329678 330338 MC_gene_0252 1 + 329678 330338 -chrII 329756 330418 MC_gene_0253 1 + 329756 330418 -chrII 330461 331485 LC_gene_0254 1 + 330461 331485 -chrII 331778 332487 HC_gene_0255 77 + 331778 332462 -chrII 332672 334236 HC_gene_0256 2190 + 332672 334236 -chrII 334199 335948 LC_gene_0257 1 + 334199 335948 -chrII 336461 336973 LC_gene_0258 1 + 336461 336973 -chrII 337196 337999 MC_gene_0259 1 + 337196 337999 -chrII 338098 338734 LC_gene_0260 1 + 338098 338734 -chrII 339727 340243 MC_gene_0261 1 + 339727 340243 -chrII 340992 342424 HC_gene_0262 1 + 340992 342208 -chrII 342785 344676 HC_gene_0263 224 + 342785 344604 -chrII 347807 349425 HC_gene_0264 104 + 347807 349425 -chrII 350028 350605 HC_gene_0265 10 + 350028 350575 -chrII 351058 352014 HC_gene_0266 87 + 351058 352014 -chrII 353378 353861 MC_gene_0267 1 + 353378 353712 -chrII 356245 356878 MC_gene_0268 1 + 356245 356878 -chrII 360290 360897 MC_gene_0269 1 + 360290 360689 -chrII 362862 364803 HC_gene_0270 20 + 362862 364678 -chrII 364843 365667 LC_gene_0271 1 + 364843 365667 -chrII 365919 366475 HC_gene_0272 4 + 365919 366205 -chrII 366772 366936 MC_gene_0273 1 + 366772 366936 -chrII 370546 370891 HC_gene_0274 21 + 370546 370867 -chrII 371461 374016 HC_gene_0275 4 + 371461 373738 -chrII 374016 375874 LC_gene_0276 1 + 374016 375874 -chrII 376524 378661 HC_gene_0277 5 + 376524 378661 -chrII 380238 381667 HC_gene_0278 60 + 380238 381316 -chrII 381687 382841 HC_gene_0279 93 + 381687 382841 -chrII 383138 386159 HC_gene_0280 17 + 383138 386052 -chrII 386279 389407 HC_gene_0281 38 + 386279 389334 -chrII 390156 391702 LC_gene_0282 1 + 390156 391702 -chrII 391918 392439 MC_gene_0283 2 + 391918 392415 -chrII 392929 395474 HC_gene_0284 3223 + 392929 395380 -chrII 398549 401233 LC_gene_0285 1 + 398549 401233 -chrII 406114 406590 HC_gene_0286 7 + 406114 406579 -chrII 407361 407988 HC_gene_0287 1 + 407361 407988 -chrII 407572 408133 HC_gene_0288 2 + 407572 408081 -chrII 408133 409103 MC_gene_0289 1 + 408133 409103 -chrII 409121 410922 HC_gene_0290 67 + 409121 410705 -chrII 411038 414230 HC_gene_0291 128 + 411038 414207 -chrII 415885 417141 HC_gene_0292 39 + 415885 417082 -chrII 418373 418692 HC_gene_0293 3 + 418373 418692 -chrII 420119 420418 MC_gene_0294 1 + 420119 420418 -chrII 423490 423705 MC_gene_0295 1 + 423490 423701 -chrII 423752 424921 HC_gene_0296 39 + 423752 424885 -chrII 425080 426487 LC_gene_0297 1 + 425080 426124 -chrII 427132 427845 HC_gene_0298 3 + 427132 427728 -chrII 427845 429595 MC_gene_0299 1 + 427845 429595 -chrII 429564 431761 HC_gene_0300 15 + 429564 431689 -chrII 431968 434415 HC_gene_0301 13 + 431968 434404 -chrII 435938 436815 HC_gene_0302 194 + 435938 436792 -chrII 436918 441390 HC_gene_0303 2 + 436918 441388 -chrII 441515 443771 HC_gene_0304 5 + 441515 443771 -chrII 445036 445344 MC_gene_0305 1 + 445036 445344 -chrII 447590 449368 HC_gene_0306 17 + 447590 449365 -chrII 449605 451126 HC_gene_0307 103 + 449605 451126 -chrII 452620 453583 HC_gene_0308 1178 + 452620 453583 -chrII 453600 454771 HC_gene_0309 16 + 453600 454771 -chrII 454780 457942 HC_gene_0310 2 + 454780 457886 -chrII 458690 460485 HC_gene_0311 50 + 458690 460323 -chrII 460761 461153 MC_gene_0312 1 + 460761 461153 -chrII 462100 462843 HC_gene_0313 166 + 462100 462747 -chrII 467158 469820 HC_gene_0314 27 + 467158 469791 -chrII 474354 476554 MC_gene_0315 1 + 474354 476554 -chrII 475263 477008 MC_gene_0316 1 + 475263 477008 -chrII 476870 477193 MC_gene_0317 1 + 476870 477191 -chrII 477647 479246 HC_gene_0318 5619 + 477647 479209 -chrII 479299 480473 HC_gene_0319 23 + 479299 480473 -chrII 483801 484148 MC_gene_0320 2 + 483801 484093 -chrII 484148 484944 LC_gene_0321 1 + 484148 484866 -chrII 485939 486959 LC_gene_0322 1 + 485939 486959 -chrII 488671 489161 HC_gene_0323 8 + 488671 489029 -chrII 490825 491472 HC_gene_0324 356 + 490825 491273 -chrII 493057 493670 HC_gene_0325 2 + 493057 493385 -chrII 495578 496308 MC_gene_0326 1 + 495578 496308 -chrII 497131 499365 HC_gene_0327 11 + 497131 499365 -chrII 501383 501983 LC_gene_0328 1 + 501383 501983 -chrII 504776 505590 HC_gene_0329 89 + 504776 505584 -chrII 505621 512974 HC_gene_0330 1 + 505621 512974 -chrII 512980 513833 HC_gene_0331 125 + 512980 513739 -chrII 515654 517504 HC_gene_0332 70 + 515654 517504 -chrII 527182 527797 HC_gene_0333 9 + 527182 527743 -chrII 528269 530766 HC_gene_0334 36 + 528269 530759 -chrII 532503 533321 HC_gene_0335 2 + 532503 533321 -chrII 533704 535060 HC_gene_0336 225 + 533704 534927 -chrII 535186 536490 HC_gene_0337 159 + 535186 536490 -chrII 536548 539792 HC_gene_0338 27 + 536548 539792 -chrII 540005 541307 HC_gene_0339 172 + 540005 541206 -chrII 541435 542326 MC_gene_0340 1 + 541435 542326 -chrII 544880 546203 HC_gene_0341 144 + 544880 546184 -chrII 546332 548621 HC_gene_0342 75 + 546332 548411 -chrII 549693 551094 HC_gene_0343 121 + 549693 551020 -chrII 553533 554448 MC_gene_0344 1 + 553533 554448 -chrII 555261 558599 HC_gene_0345 196 + 555261 558348 -chrII 558642 559887 HC_gene_0346 201 + 558642 559816 -chrII 560000 561205 HC_gene_0347 62 + 560000 561070 -chrII 561414 563039 MC_gene_0348 1 + 561414 563016 -chrII 564852 565582 HC_gene_0349 873 + 564852 565527 -chrII 565620 567706 HC_gene_0350 19 + 565620 567680 -chrII 568763 569979 HC_gene_0351 54 + 568763 569839 -chrII 569979 570533 LC_gene_0352 1 + 569979 570533 -chrII 571408 571889 MC_gene_0353 1 + 571408 571761 -chrII 572053 573784 HC_gene_0354 15 + 572053 573774 -chrII 574375 574761 LC_gene_0355 1 + 574375 574761 -chrII 576367 576779 MC_gene_0356 1 + 576367 576779 -chrII 578336 579227 HC_gene_0357 253 + 578336 579178 -chrII 581754 582343 MC_gene_0358 1 + 581754 582318 -chrII 582367 583468 HC_gene_0359 32 + 582367 583465 -chrII 583600 584925 HC_gene_0360 31 + 583600 584925 -chrII 591499 591706 MC_gene_0361 1 + 591499 591706 -chrII 594111 595065 LC_gene_0362 1 + 594111 595065 -chrII 595067 596054 MC_gene_0363 1 + 595067 596054 -chrII 596058 597145 HC_gene_0364 53 + 596058 597141 -chrII 597344 599078 HC_gene_0365 4 + 597344 599078 -chrII 600750 602524 LC_gene_0366 1 + 600750 602524 -chrII 602503 603883 HC_gene_0367 232 + 602503 603666 -chrII 604483 606030 HC_gene_0368 2929 + 604483 605579 -chrII 606246 607416 HC_gene_0369 2805 + 606246 607283 -chrII 607487 609210 HC_gene_0370 61 + 607487 609044 -chrII 609895 611992 HC_gene_0371 50 + 609895 611992 -chrII 614446 615230 HC_gene_0372 21 + 614446 615225 -chrII 615404 617546 MC_gene_0373 3 + 615404 617546 -chrII 618814 620564 HC_gene_0374 144 + 618814 620564 -chrII 620815 622752 HC_gene_0375 27 + 620815 622752 -chrII 623438 624488 HC_gene_0376 57 + 623438 624488 -chrII 624391 625540 LC_gene_0377 1 + 624391 625530 -chrII 625760 628539 HC_gene_0378 15 + 625760 628491 -chrII 628987 632169 HC_gene_0379 14 + 628987 632169 -chrII 633573 634998 HC_gene_0380 100 + 633573 634991 -chrII 635092 636816 HC_gene_0381 66 + 635092 636656 -chrII 640156 642353 LC_gene_0382 1 + 640156 642353 -chrII 644129 644501 MC_gene_0383 1 + 644129 644493 -chrII 645326 646293 HC_gene_0384 109 + 645326 646224 -chrII 647478 650201 HC_gene_0385 45 + 647478 650113 -chrII 650296 651390 HC_gene_0386 10 + 650296 651390 -chrII 651334 653229 HC_gene_0387 64 + 651334 653192 -chrII 653313 655461 HC_gene_0388 8 + 653313 655437 -chrII 657783 658727 HC_gene_0389 47 + 657783 658721 -chrII 664973 665476 LC_gene_0390 1 + 664973 665476 -chrII 666101 667126 LC_gene_0391 1 + 666101 666683 -chrII 668101 668483 LC_gene_0392 1 + 668101 668483 -chrII 670490 673670 HC_gene_0393 3 + 670490 673594 -chrII 675312 676444 HC_gene_0394 60 + 675312 676391 -chrII 677646 679441 LC_gene_0395 1 + 677646 679441 -chrII 680300 680707 HC_gene_0396 86 + 680300 680707 -chrII 680680 681951 LC_gene_0397 1 + 680680 681951 -chrII 682220 682561 LC_gene_0398 1 + 682220 682525 -chrII 683355 684822 HC_gene_0399 29 + 683355 684802 -chrII 684946 685717 HC_gene_0400 175 + 684946 685462 -chrII 686818 690361 HC_gene_0401 5 + 686818 690350 -chrII 691923 694588 HC_gene_0402 11 + 691923 694588 -chrII 697841 698898 HC_gene_0403 19 + 697841 698748 -chrII 699213 700095 LC_gene_0404 1 + 699213 700095 -chrII 700173 700433 MC_gene_0405 1 + 700173 700384 -chrII 703508 704412 MC_gene_0406 1 + 703508 704389 -chrII 704509 706894 HC_gene_0407 80 + 704509 706894 -chrII 707320 708275 HC_gene_0408 307 + 707320 708205 -chrII 711554 712913 HC_gene_0409 64 + 711554 712845 -chrII 715014 716548 MC_gene_0410 1 + 715014 716546 -chrII 718403 719397 HC_gene_0411 2 + 718403 719389 -chrII 721329 722433 HC_gene_0412 49 + 721329 722396 -chrII 722591 723178 HC_gene_0413 223 + 722591 723118 -chrII 723207 724037 HC_gene_0414 114 + 723207 723728 -chrII 724421 727048 HC_gene_0415 39 + 724421 727048 -chrII 727352 727902 LC_gene_0416 1 + 727352 727902 -chrII 728352 729778 HC_gene_0417 2 + 728352 729778 -chrII 728852 730001 HC_gene_0418 32 + 728852 729987 -chrII 730339 732635 HC_gene_0419 5 + 730339 732635 -chrII 734773 735677 LC_gene_0420 1 + 734773 735677 -chrII 736222 737991 HC_gene_0421 217 + 736222 737803 -chrII 738544 739774 HC_gene_0422 109 + 738544 739688 -chrII 739827 741197 HC_gene_0423 87 + 739827 741145 -chrII 741267 741810 HC_gene_0424 251 + 741267 741721 -chrII 741830 742169 MC_gene_0425 1 + 741830 742169 -chrII 744825 746259 HC_gene_0426 34 + 744825 746217 -chrII 747108 748010 LC_gene_0427 1 + 747108 748010 -chrII 749542 751335 HC_gene_0428 10 + 749542 751335 -chrII 752882 754219 LC_gene_0429 1 + 752882 754219 -chrII 760267 761103 HC_gene_0430 47 + 760267 761103 -chrII 761227 762879 HC_gene_0431 163 + 761227 762714 -chrII 762879 764535 LC_gene_0432 1 + 762879 764535 -chrII 767416 768182 LC_gene_0433 1 + 767416 768182 -chrII 768191 768888 HC_gene_0434 123 + 768191 768791 -chrII 768955 769921 MC_gene_0435 1 + 768955 769921 -chrII 770867 771782 MC_gene_0436 1 + 770867 771782 -chrII 773327 773808 MC_gene_0437 1 + 773327 773808 -chrII 773844 774621 MC_gene_0438 3 + 773844 774621 -chrII 774681 776472 HC_gene_0439 550 + 774681 776381 -chrII 776536 778177 HC_gene_0440 117 + 776536 778177 -chrII 778497 779305 MC_gene_0441 1 + 778497 779305 -chrII 779628 782499 HC_gene_0442 11 + 779628 782442 -chrII 782582 783742 HC_gene_0443 97 + 782582 783686 -chrII 783810 784710 MC_gene_0444 1 + 783810 784710 -chrII 785427 786702 HC_gene_0445 29 + 785427 786666 -chrII 787091 788824 HC_gene_0446 32 + 787091 788792 -chrII 791474 791888 MC_gene_0447 1 + 791474 791888 -chrII 792435 796677 HC_gene_0448 2 + 792435 796655 -chrII 796701 798929 MC_gene_0449 1 + 796701 798929 -chrII 799235 799595 MC_gene_0450 2 + 799235 799595 -chrII 800471 802166 HC_gene_0451 33 + 800471 802166 -chrII 805328 807241 MC_gene_0452 1 + 805328 807241 -chrII 807217 808376 HC_gene_0453 17 + 807217 808376 -chrII 808582 809537 LC_gene_0454 1 + 808582 809537 -chrII 809993 811865 LC_gene_0455 1 + 809993 811865 -chrII 198 3894 MC_gene_0456 1 - 198 3894 -chrII 9785 10552 HC_gene_0457 126 - 9831 10552 -chrII 10770 11318 HC_gene_0458 2 - 10770 11318 -chrII 14025 17966 HC_gene_0459 19 - 14101 17966 -chrII 18063 21314 HC_gene_0460 6 - 18073 21314 -chrII 21529 23782 HC_gene_0461 30 - 21567 23782 -chrII 24803 28607 HC_gene_0462 11 - 24803 28607 -chrII 28977 29731 MC_gene_0463 1 - 28977 29731 -chrII 29781 30931 LC_gene_0464 1 - 29781 30931 -chrII 35393 36234 MC_gene_0465 1 - 35393 36234 -chrII 36546 36793 LC_gene_0466 1 - 36546 36793 -chrII 43838 44969 HC_gene_0467 180 - 44104 44969 -chrII 46217 47194 MC_gene_0468 1 - 46217 47194 -chrII 47222 49039 HC_gene_0469 226 - 47268 49039 -chrII 49059 49397 MC_gene_0470 1 - 49139 49397 -chrII 50929 51605 HC_gene_0471 14 - 50929 51605 -chrII 52181 54030 MC_gene_0472 1 - 52207 54030 -chrII 54033 55526 MC_gene_0473 2 - 54039 55526 -chrII 54202 59549 MC_gene_0474 3 - 54202 59549 -chrII 59629 60778 HC_gene_0475 1035 - 59709 60778 -chrII 61144 62718 HC_gene_0476 33 - 61152 62718 -chrII 66969 69567 HC_gene_0477 9 - 66975 69567 -chrII 69653 71159 HC_gene_0478 28 - 69656 71159 -chrII 71452 71990 LC_gene_0479 1 - 71498 71990 -chrII 72961 74712 HC_gene_0480 3 - 72961 74712 -chrII 79853 80755 HC_gene_0481 74 - 79880 80755 -chrII 80824 84291 HC_gene_0482 617 - 80944 84291 -chrII 84414 86473 HC_gene_0483 1 - 84414 86473 -chrII 86645 87801 HC_gene_0484 1 - 87121 87801 -chrII 88013 89465 HC_gene_0485 2933 - 88401 89465 -chrII 89803 90466 LC_gene_0486 1 - 89803 90466 -chrII 90584 91436 LC_gene_0487 1 - 90584 91436 -chrII 93518 96113 HC_gene_0488 38 - 93519 96113 -chrII 96318 99445 HC_gene_0489 1 - 96328 99445 -chrII 100265 101189 HC_gene_0490 199 - 100297 101189 -chrII 104000 104677 MC_gene_0491 1 - 104000 104677 -chrII 105189 107507 HC_gene_0492 47 - 105228 107507 -chrII 108802 109981 MC_gene_0493 1 - 108802 109981 -chrII 109934 111206 HC_gene_0494 53 - 109934 111206 -chrII 112618 113440 HC_gene_0495 136 - 112733 113440 -chrII 115264 117199 HC_gene_0496 55 - 115314 117199 -chrII 119261 122103 HC_gene_0497 44 - 119282 122103 -chrII 122166 124823 HC_gene_0498 117 - 122304 124823 -chrII 125967 127562 HC_gene_0499 7 - 126092 127562 -chrII 127624 132197 HC_gene_0500 131 - 127677 132197 -chrII 133664 135703 HC_gene_0501 122 - 133843 135703 -chrII 136586 137554 MC_gene_0502 1 - 136586 137554 -chrII 137699 140317 HC_gene_0503 28 - 138075 140317 -chrII 141822 143112 HC_gene_0504 174 - 142000 143112 -chrII 143578 145783 HC_gene_0505 223 - 143588 145783 -chrII 146769 146979 MC_gene_0506 1 - 146769 146979 -chrII 150161 151237 HC_gene_0507 284 - 150221 151237 -chrII 151293 153689 HC_gene_0508 8 - 151407 153689 -chrII 153657 158452 HC_gene_0509 1 - 153657 158452 -chrII 158480 159722 HC_gene_0510 97 - 158487 159722 -chrII 160451 161456 LC_gene_0511 1 - 160451 161456 -chrII 162503 164116 HC_gene_0512 1032 - 162763 164116 -chrII 164199 164827 HC_gene_0513 43 - 164384 164827 -chrII 164933 166956 HC_gene_0514 5 - 164933 166956 -chrII 166987 167878 HC_gene_0515 357 - 167055 167878 -chrII 169324 169951 HC_gene_0516 93 - 169354 169951 -chrII 170005 170430 HC_gene_0517 1 - 170156 170430 -chrII 170937 171282 MC_gene_0518 1 - 171041 171282 -chrII 171408 172221 LC_gene_0519 1 - 171408 172221 -chrII 174721 177580 HC_gene_0520 17 - 174749 177580 -chrII 177664 181395 HC_gene_0521 51 - 177795 181395 -chrII 181430 182136 HC_gene_0522 73 - 181486 182136 -chrII 184083 185143 LC_gene_0523 1 - 184083 185143 -chrII 185476 186508 HC_gene_0524 75 - 185512 186508 -chrII 186646 190035 HC_gene_0525 24 - 186768 190035 -chrII 190055 191749 HC_gene_0526 1 - 190765 191749 -chrII 192694 193262 LC_gene_0527 1 - 192694 193262 -chrII 193508 195693 LC_gene_0528 1 - 193508 195693 -chrII 196516 197390 LC_gene_0529 1 - 196516 197390 -chrII 197578 198312 HC_gene_0530 1 - 197578 198312 -chrII 198428 198738 HC_gene_0531 3 - 198428 198738 -chrII 198826 201778 HC_gene_0532 11 - 198918 201778 -chrII 201870 202235 MC_gene_0533 1 - 201899 202235 -chrII 205797 206952 HC_gene_0534 17 - 205798 206952 -chrII 208301 209393 LC_gene_0535 1 - 208301 209393 -chrII 211504 212207 LC_gene_0536 1 - 211504 212207 -chrII 212422 216416 HC_gene_0537 75 - 212461 216416 -chrII 216353 217151 HC_gene_0538 163 - 216353 217151 -chrII 218254 219473 MC_gene_0539 1 - 218254 219473 -chrII 219732 221023 HC_gene_0540 3 - 219976 221023 -chrII 234771 235820 HC_gene_0541 2463 - 235103 235820 -chrII 235777 235984 HC_gene_0542 1 - 235777 235984 -chrII 236865 237479 HC_gene_0543 679 - 236902 237479 -chrII 237771 238064 MC_gene_0544 1 - 237771 238064 -chrII 238760 241425 HC_gene_0545 11 - 238760 241425 -chrII 241468 242594 HC_gene_0546 78 - 241504 242594 -chrII 244271 245684 HC_gene_0547 81 - 244271 245684 -chrII 246634 247815 LC_gene_0548 1 - 246634 247815 -chrII 248165 251107 HC_gene_0549 7 - 248517 251107 -chrII 251882 254890 HC_gene_0550 14 - 251882 254890 -chrII 252522 255818 HC_gene_0551 2885 - 252522 255818 -chrII 256864 258006 HC_gene_0552 1706 - 256997 258006 -chrII 258696 266068 MC_gene_0553 3 - 258696 266068 -chrII 266448 267420 HC_gene_0554 95 - 266612 267420 -chrII 267453 269597 HC_gene_0555 114 - 267536 269597 -chrII 270682 272809 HC_gene_0556 28 - 270743 272809 -chrII 272829 273751 HC_gene_0557 2 - 272937 273751 -chrII 274319 275663 MC_gene_0558 2 - 274319 275663 -chrII 276141 276529 HC_gene_0559 20 - 276141 276529 -chrII 280440 280893 MC_gene_0560 1 - 280580 280893 -chrII 283216 283531 HC_gene_0561 2 - 283311 283531 -chrII 284046 288070 HC_gene_0562 15 - 284296 288070 -chrII 288335 289176 MC_gene_0563 1 - 288340 289176 -chrII 289847 291903 HC_gene_0564 1159 - 290461 291903 -chrII 292747 294088 HC_gene_0565 70 - 292759 294088 -chrII 294181 296064 HC_gene_0566 35 - 294246 296064 -chrII 296151 297822 HC_gene_0567 116 - 296216 297822 -chrII 299404 299872 LC_gene_0568 1 - 299445 299872 -chrII 301339 306000 HC_gene_0569 268 - 301339 306000 -chrII 306077 306986 HC_gene_0570 418 - 306168 306986 -chrII 307011 308082 HC_gene_0571 1 - 307256 308082 -chrII 308647 310362 HC_gene_0572 143 - 308883 310362 -chrII 310470 311487 HC_gene_0573 41 - 310492 311487 -chrII 314352 314878 LC_gene_0574 1 - 314352 314878 -chrII 315496 316516 MC_gene_0575 1 - 315496 316516 -chrII 316516 317056 MC_gene_0576 1 - 316535 317056 -chrII 320283 321637 HC_gene_0577 51 - 320344 321637 -chrII 321697 324095 HC_gene_0578 19 - 321766 324095 -chrII 324261 326055 HC_gene_0579 16 - 324266 326055 -chrII 326112 326652 MC_gene_0580 1 - 326112 326652 -chrII 328046 328525 HC_gene_0581 1 - 328046 328525 -chrII 330112 331543 HC_gene_0582 61 - 330116 331543 -chrII 331965 332386 LC_gene_0583 1 - 331965 332386 -chrII 334010 336931 HC_gene_0584 9 - 334138 336931 -chrII 337141 338241 MC_gene_0585 1 - 337141 338241 -chrII 338463 339414 HC_gene_0586 287 - 338552 339414 -chrII 339330 340776 HC_gene_0587 99 - 339330 340776 -chrII 340827 341499 MC_gene_0588 1 - 340893 341499 -chrII 342821 344170 MC_gene_0589 1 - 342821 344170 -chrII 344456 347323 MC_gene_0590 2 - 344471 347323 -chrII 349316 349978 MC_gene_0591 1 - 349324 349978 -chrII 351032 351504 HC_gene_0592 1 - 351043 351504 -chrII 351903 353383 HC_gene_0593 22 - 351911 353383 -chrII 353514 356040 HC_gene_0594 11 - 353514 356040 -chrII 356124 356626 HC_gene_0595 369 - 356147 356626 -chrII 356666 360321 HC_gene_0596 15 - 356751 360321 -chrII 360451 362602 HC_gene_0597 21 - 360538 362602 -chrII 364554 365727 HC_gene_0598 65 - 364628 365727 -chrII 365820 366611 HC_gene_0599 50 - 365869 366611 -chrII 366524 369733 HC_gene_0600 3 - 366524 369733 -chrII 369808 370756 HC_gene_0601 46 - 369949 370756 -chrII 370762 371147 HC_gene_0602 2 - 370762 371147 -chrII 371497 372787 HC_gene_0603 328 - 371963 372787 -chrII 373224 375753 HC_gene_0604 314 - 373638 375753 -chrII 375711 378539 HC_gene_0605 77 - 375711 378539 -chrII 379113 381230 HC_gene_0606 53 - 379175 381230 -chrII 382358 382962 MC_gene_0607 1 - 382383 382962 -chrII 385623 386049 LC_gene_0608 1 - 385623 386049 -chrII 390115 391021 LC_gene_0609 1 - 390115 391021 -chrII 391021 392718 HC_gene_0610 193 - 391163 392718 -chrII 395091 398303 HC_gene_0611 210 - 395094 398303 -chrII 398423 400917 HC_gene_0612 96 - 398466 400917 -chrII 401098 405398 HC_gene_0613 17 - 401125 405398 -chrII 406056 406331 HC_gene_0614 4 - 406110 406331 -chrII 406351 407246 HC_gene_0615 1427 - 406458 407246 -chrII 407820 408530 MC_gene_0616 1 - 408077 408530 -chrII 410601 410946 MC_gene_0617 1 - 410601 410946 -chrII 413740 414765 HC_gene_0618 2832 - 414061 414765 -chrII 414787 415494 HC_gene_0619 8 - 414823 415494 -chrII 417004 418081 HC_gene_0620 1 - 417004 418081 -chrII 418359 419194 HC_gene_0621 444 - 418532 419194 -chrII 419759 422363 HC_gene_0622 187 - 420067 422363 -chrII 422399 423348 HC_gene_0623 1 - 422554 423348 -chrII 424725 425807 HC_gene_0624 224 - 424876 425807 -chrII 425852 426402 HC_gene_0625 134 - 426030 426402 -chrII 426453 426900 HC_gene_0626 7 - 426453 426900 -chrII 427003 427526 HC_gene_0627 100 - 427052 427526 -chrII 427555 429116 HC_gene_0628 383 - 427645 429116 -chrII 429488 431822 HC_gene_0629 17 - 429488 431822 -chrII 434163 435739 HC_gene_0630 46 - 434242 435739 -chrII 439369 441302 LC_gene_0631 1 - 439369 441302 -chrII 442923 444718 HC_gene_0632 142 - 442923 444718 -chrII 444867 447402 HC_gene_0633 14 - 444867 447402 -chrII 449326 450286 LC_gene_0634 1 - 449329 450286 -chrII 450651 452009 HC_gene_0635 329 - 450757 452009 -chrII 452833 454649 HC_gene_0636 19 - 453229 454649 -chrII 456364 457746 LC_gene_0637 1 - 456364 457746 -chrII 457722 458407 HC_gene_0638 802 - 457722 458407 -chrII 460915 461866 HC_gene_0639 369 - 460923 461866 -chrII 462455 466042 HC_gene_0640 128 - 462610 466042 -chrII 469541 474044 HC_gene_0641 63 - 469602 474044 -chrII 474239 475341 LC_gene_0642 1 - 474239 475341 -chrII 476878 477352 MC_gene_0643 1 - 476878 477352 -chrII 480121 480994 HC_gene_0644 62 - 480178 480994 -chrII 481063 483435 HC_gene_0645 787 - 481222 483435 -chrII 483590 484544 HC_gene_0646 132 - 483802 484544 -chrII 484654 486755 HC_gene_0647 9 - 484682 486755 -chrII 486944 488569 HC_gene_0648 39 - 486944 488569 -chrII 488726 491064 HC_gene_0649 255 - 488772 491064 -chrII 491067 492872 HC_gene_0650 1072 - 491067 492872 -chrII 492956 494193 HC_gene_0651 11 - 492973 494193 -chrII 494214 495375 HC_gene_0652 59 - 494218 495375 -chrII 495421 496899 HC_gene_0653 48 - 495487 496899 -chrII 499346 501595 HC_gene_0654 14 - 499346 501595 -chrII 501480 504408 HC_gene_0655 15 - 501480 504408 -chrII 510515 511521 MC_gene_0656 1 - 510515 511521 -chrII 511739 512267 LC_gene_0657 1 - 511739 512267 -chrII 513539 515367 HC_gene_0658 7 - 513610 515367 -chrII 517165 521357 HC_gene_0659 2 - 517198 521357 -chrII 521613 526713 MC_gene_0660 3 - 521613 526713 -chrII 526713 528060 HC_gene_0661 32 - 526865 528060 -chrII 530370 532205 HC_gene_0662 788 - 530370 532205 -chrII 532432 533008 MC_gene_0663 1 - 532432 533008 -chrII 533683 534979 HC_gene_0664 3 - 533683 534979 -chrII 535062 536214 LC_gene_0665 1 - 535062 536214 -chrII 538965 539319 MC_gene_0666 1 - 538965 539319 -chrII 539011 539441 MC_gene_0667 1 - 539011 539441 -chrII 539461 541107 MC_gene_0668 2 - 539693 541107 -chrII 541107 544749 HC_gene_0669 7 - 541131 544749 -chrII 545824 546583 MC_gene_0670 1 - 546001 546583 -chrII 546709 547714 LC_gene_0671 1 - 547054 547714 -chrII 548057 549101 HC_gene_0672 433 - 548261 549101 -chrII 549163 549586 HC_gene_0673 9 - 549215 549586 -chrII 550889 553238 HC_gene_0674 4 - 550925 553238 -chrII 553343 553915 HC_gene_0675 7 - 553430 553915 -chrII 553935 555674 HC_gene_0676 7 - 554340 555674 -chrII 556300 556990 LC_gene_0677 1 - 556300 556990 -chrII 557968 558289 MC_gene_0678 1 - 557968 558289 -chrII 558355 559120 LC_gene_0679 1 - 558355 559120 -chrII 559535 560013 MC_gene_0680 1 - 559736 560013 -chrII 560733 560995 MC_gene_0681 1 - 560733 560995 -chrII 561503 562456 LC_gene_0682 1 - 561503 562456 -chrII 562635 564846 HC_gene_0683 1452 - 562746 564846 -chrII 567441 568536 HC_gene_0684 342 - 567441 568536 -chrII 568796 569664 LC_gene_0685 1 - 568796 569664 -chrII 569664 571244 HC_gene_0686 75 - 569793 571244 -chrII 571346 572299 HC_gene_0687 74 - 571346 572299 -chrII 573699 576012 HC_gene_0688 31 - 573714 576012 -chrII 576143 578137 HC_gene_0689 17 - 576192 578137 -chrII 578803 581468 HC_gene_0690 77 - 579009 581468 -chrII 581512 582195 HC_gene_0691 383 - 581580 582195 -chrII 582174 583377 LC_gene_0692 1 - 582174 583377 -chrII 584537 586195 HC_gene_0693 73 - 584668 586195 -chrII 586367 589174 HC_gene_0694 10 - 586457 589174 -chrII 590076 591388 MC_gene_0695 1 - 590076 591388 -chrII 591408 592800 HC_gene_0696 651 - 591607 592800 -chrII 593108 595598 HC_gene_0697 1 - 593108 595598 -chrII 598838 599979 HC_gene_0698 46 - 598937 599979 -chrII 601166 602220 HC_gene_0699 15 - 601191 602220 -chrII 603349 604183 HC_gene_0700 63 - 603409 604183 -chrII 605502 606083 LC_gene_0701 1 - 605502 606083 -chrII 607252 607848 LC_gene_0702 1 - 607252 607848 -chrII 608434 609795 HC_gene_0703 58 - 608434 609795 -chrII 610425 611925 HC_gene_0704 21 - 610486 611925 -chrII 611949 615877 HC_gene_0705 2360 - 612052 615877 -chrII 616011 618602 HC_gene_0706 26 - 616034 618602 -chrII 622662 623242 HC_gene_0707 2 - 622662 623242 -chrII 624142 624858 HC_gene_0708 83 - 624149 624858 -chrII 624243 625058 HC_gene_0709 9 - 624243 625058 -chrII 628810 629774 HC_gene_0710 2 - 628810 629774 -chrII 630146 631984 LC_gene_0711 1 - 630146 631984 -chrII 632091 633426 HC_gene_0712 17 - 632091 633426 -chrII 634797 635422 LC_gene_0713 1 - 634797 635422 -chrII 636493 641976 MC_gene_0714 3 - 636548 641976 -chrII 641976 642670 HC_gene_0715 81 - 642291 642670 -chrII 643465 645003 MC_gene_0716 1 - 643465 645003 -chrII 645927 647230 HC_gene_0717 32 - 646031 647230 -chrII 650353 651144 MC_gene_0718 2 - 650353 651144 -chrII 651236 652697 MC_gene_0719 1 - 651236 652697 -chrII 653060 654510 MC_gene_0720 1 - 653060 654510 -chrII 654999 655257 MC_gene_0721 1 - 654999 655257 -chrII 655257 657631 HC_gene_0722 11 - 655303 657631 -chrII 658375 662513 HC_gene_0723 83 - 658563 662513 -chrII 662656 664760 HC_gene_0724 21 - 662770 664760 -chrII 664788 666459 HC_gene_0725 597 - 664906 666459 -chrII 666595 668394 HC_gene_0726 83 - 666603 668394 -chrII 668405 670318 HC_gene_0727 10 - 668405 670318 -chrII 673382 675193 HC_gene_0728 50 - 673439 675193 -chrII 675851 679231 HC_gene_0729 22 - 675851 679231 -chrII 679282 680077 HC_gene_0730 33 - 679459 680077 -chrII 680131 681862 HC_gene_0731 12 - 680357 681862 -chrII 682030 683148 HC_gene_0732 46 - 682127 683148 -chrII 685141 686638 HC_gene_0733 321 - 685370 686638 -chrII 689074 691732 HC_gene_0734 67 - 689074 691732 -chrII 694597 697376 HC_gene_0735 55 - 694613 697376 -chrII 698069 700093 HC_gene_0736 12 - 698069 700093 -chrII 700263 702171 HC_gene_0737 8 - 700263 702171 -chrII 702518 704085 HC_gene_0738 11 - 702520 704085 -chrII 704465 706826 HC_gene_0739 67 - 704465 706826 -chrII 707875 711384 HC_gene_0740 28 - 708039 711384 -chrII 712643 714477 HC_gene_0741 66 - 712749 714477 -chrII 714639 716554 HC_gene_0742 132 - 714724 716554 -chrII 716610 718085 HC_gene_0743 1256 - 716673 718085 -chrII 718486 718950 LC_gene_0744 1 - 718487 718950 -chrII 720625 721146 LC_gene_0745 1 - 720625 721146 -chrII 722251 722854 HC_gene_0746 7 - 722278 722854 -chrII 723292 724267 HC_gene_0747 69 - 723595 724267 -chrII 726484 727112 HC_gene_0748 83 - 726517 727112 -chrII 727189 728138 HC_gene_0749 835 - 727207 728138 -chrII 729364 730186 HC_gene_0750 41 - 729364 730186 -chrII 732510 734649 HC_gene_0751 7 - 732510 734649 -chrII 734666 735568 HC_gene_0752 111 - 734666 735568 -chrII 735594 736075 HC_gene_0753 4 - 735594 736075 -chrII 737428 738395 HC_gene_0754 19 - 737678 738395 -chrII 741798 742598 HC_gene_0755 217 - 741999 742598 -chrII 742721 744671 HC_gene_0756 14 - 742721 744671 -chrII 746068 747819 HC_gene_0757 38 - 746114 747819 -chrII 747951 749403 HC_gene_0758 50 - 747952 749403 -chrII 751183 757208 HC_gene_0759 12 - 751183 757208 -chrII 757460 760138 HC_gene_0760 16 - 757528 760138 -chrII 762620 764701 HC_gene_0761 6 - 762620 764701 -chrII 764853 767650 HC_gene_0762 8 - 764857 767650 -chrII 768624 770560 HC_gene_0763 201 - 768708 770560 -chrII 773774 774444 HC_gene_0764 2 - 773774 774444 -chrII 775679 776284 LC_gene_0765 1 - 775679 776284 -chrII 776286 776741 MC_gene_0766 1 - 776286 776741 -chrII 777764 779509 MC_gene_0767 1 - 777894 779509 -chrII 783526 784609 HC_gene_0768 211 - 783575 784609 -chrII 784853 785753 HC_gene_0769 11 - 784960 785753 -chrII 786198 786870 HC_gene_0770 35 - 786286 786870 -chrII 789044 792068 HC_gene_0771 2 - 789057 792068 -chrII 792033 792568 HC_gene_0772 11 - 792033 792568 -chrII 792685 792997 LC_gene_0773 1 - 792685 792997 -chrII 796541 798894 MC_gene_0774 2 - 796541 798894 -chrII 799329 799985 MC_gene_0775 1 - 799329 799985 -chrII 802539 804896 HC_gene_0776 19 - 802539 804896 -chrII 806154 807165 MC_gene_0777 1 - 806154 807165 -chrII 808305 809375 MC_gene_0778 1 - 808305 809375 -chrII 809454 809742 MC_gene_0779 1 - 809454 809742 -chrII 810260 811484 MC_gene_0780 1 - 810260 811484 -chrIII 1406 4281 LC_gene_0781 1 + 1406 4281 -chrIII 17272 18822 HC_gene_0782 36 + 17272 18710 -chrIII 22088 22565 LC_gene_0783 1 + 22088 22540 -chrIII 23560 24324 HC_gene_0784 314 + 23560 23988 -chrIII 24780 27059 HC_gene_0785 173 + 24780 27037 -chrIII 27912 30781 HC_gene_0786 147 + 27912 30130 -chrIII 31430 34305 HC_gene_0787 107 + 31430 34156 -chrIII 35577 37930 HC_gene_0788 32 + 35577 37847 -chrIII 39025 39507 MC_gene_0789 2 + 39025 39505 -chrIII 39666 41066 MC_gene_0790 1 + 39666 41066 -chrIII 41063 41402 HC_gene_0791 7 + 41063 41395 -chrIII 41433 41961 MC_gene_0792 1 + 41433 41961 -chrIII 42134 43650 MC_gene_0793 1 + 42134 43650 -chrIII 44646 46503 LC_gene_0794 1 + 44646 46503 -chrIII 46547 47079 LC_gene_0795 1 + 46547 47079 -chrIII 47444 48302 MC_gene_0796 1 + 47444 48302 -chrIII 48643 50367 HC_gene_0797 1 + 48643 50367 -chrIII 50403 52581 HC_gene_0798 1313 + 50403 52496 -chrIII 52623 54959 HC_gene_0799 32 + 52623 54959 -chrIII 55144 56606 MC_gene_0800 1 + 55144 56606 -chrIII 56885 57352 HC_gene_0801 1 + 56885 57352 -chrIII 59044 60905 HC_gene_0802 67 + 59044 60828 -chrIII 61444 63030 HC_gene_0803 116 + 61444 62797 -chrIII 63409 64678 HC_gene_0804 44 + 63409 64678 -chrIII 68678 69566 LC_gene_0805 1 + 68678 69369 -chrIII 69918 71658 HC_gene_0806 535 + 69918 71441 -chrIII 71776 73645 HC_gene_0807 75 + 71776 73421 -chrIII 74650 75357 MC_gene_0808 1 + 74650 75357 -chrIII 77721 78011 HC_gene_0809 6 + 77721 78011 -chrIII 79098 82392 HC_gene_0810 1 + 79098 82392 -chrIII 82692 83393 MC_gene_0811 2 + 82692 83306 -chrIII 83413 84713 HC_gene_0812 26 + 83413 84713 -chrIII 87198 90727 MC_gene_0813 1 + 87198 90727 -chrIII 91194 91659 MC_gene_0814 1 + 91194 91659 -chrIII 91295 92597 MC_gene_0815 2 + 91295 92597 -chrIII 100883 101494 HC_gene_0816 3 + 100883 101447 -chrIII 101632 102165 MC_gene_0817 1 + 101632 102165 -chrIII 103639 104785 MC_gene_0818 1 + 103639 104725 -chrIII 105798 106319 LC_gene_0819 1 + 105798 106195 -chrIII 106996 107673 HC_gene_0820 520 + 106996 107525 -chrIII 107693 109125 HC_gene_0821 57 + 107693 109125 -chrIII 109025 111869 MC_gene_0822 4 + 109025 111869 -chrIII 111888 112622 HC_gene_0823 247 + 111888 112568 -chrIII 112642 112941 MC_gene_0824 1 + 112642 112941 -chrIII 112815 114276 MC_gene_0825 1 + 112815 114276 -chrIII 114592 115306 MC_gene_0826 2 + 114592 115306 -chrIII 116402 117373 HC_gene_0827 8 + 116402 117361 -chrIII 118596 119407 HC_gene_0828 135 + 118596 119259 -chrIII 120157 120471 MC_gene_0829 1 + 120157 120471 -chrIII 120499 120988 MC_gene_0830 1 + 120499 120988 -chrIII 120785 121454 MC_gene_0831 2 + 120785 121454 -chrIII 121196 121603 MC_gene_0832 1 + 121196 121603 -chrIII 124080 124788 MC_gene_0833 1 + 124080 124648 -chrIII 125213 126165 HC_gene_0834 38 + 125213 126018 -chrIII 126541 127134 HC_gene_0835 4 + 126541 126866 -chrIII 127154 127810 MC_gene_0836 1 + 127154 127770 -chrIII 128047 130707 HC_gene_0837 89 + 128047 130545 -chrIII 131868 132203 MC_gene_0838 1 + 131868 132136 -chrIII 132265 133725 HC_gene_0839 2 + 132265 133722 -chrIII 136390 136939 LC_gene_0840 1 + 136390 136939 -chrIII 137704 139395 HC_gene_0841 3135 + 137704 139179 -chrIII 139395 140190 LC_gene_0842 1 + 139395 140190 -chrIII 143606 144832 HC_gene_0843 173 + 143606 144698 -chrIII 147873 149767 MC_gene_0844 2 + 147873 149767 -chrIII 151995 152621 HC_gene_0845 1 + 151995 152436 -chrIII 152720 154061 HC_gene_0846 27 + 152720 154044 -chrIII 154319 154792 MC_gene_0847 1 + 154319 154792 -chrIII 155287 156072 HC_gene_0848 76 + 155287 156068 -chrIII 156072 157201 MC_gene_0849 1 + 156072 157201 -chrIII 156333 157307 MC_gene_0850 1 + 156333 157300 -chrIII 157720 158377 HC_gene_0851 31 + 157720 158377 -chrIII 158583 159311 HC_gene_0852 3 + 158583 159311 -chrIII 160693 162335 MC_gene_0853 1 + 160693 162335 -chrIII 163296 164313 MC_gene_0854 1 + 163296 164041 -chrIII 166535 166795 MC_gene_0855 1 + 166535 166795 -chrIII 169030 169865 HC_gene_0856 568 + 169030 169865 -chrIII 169979 171801 LC_gene_0857 1 + 169979 171801 -chrIII 171910 172871 MC_gene_0858 1 + 171910 172871 -chrIII 174584 175800 LC_gene_0859 1 + 174584 175800 -chrIII 176778 177094 MC_gene_0860 1 + 176778 177094 -chrIII 177097 177623 HC_gene_0861 2 + 177097 177396 -chrIII 179031 179361 HC_gene_0862 7 + 179031 179248 -chrIII 179392 181087 HC_gene_0863 2 + 179392 181079 -chrIII 181499 186133 MC_gene_0864 2 + 181499 186105 -chrIII 186265 190322 HC_gene_0865 24 + 186265 190322 -chrIII 190564 192116 HC_gene_0866 344 + 190564 192063 -chrIII 193243 194416 HC_gene_0867 148 + 193243 194386 -chrIII 194416 196312 LC_gene_0868 1 + 194416 196312 -chrIII 200420 201183 MC_gene_0869 1 + 200420 201183 -chrIII 202733 205530 MC_gene_0870 3 + 202733 205482 -chrIII 205788 206199 MC_gene_0871 1 + 205788 206199 -chrIII 206860 207961 MC_gene_0872 1 + 206860 207961 -chrIII 208132 210265 HC_gene_0873 3 + 208132 209958 -chrIII 211883 214022 HC_gene_0874 24 + 211883 213957 -chrIII 214060 214890 HC_gene_0875 144 + 214060 214875 -chrIII 214951 216684 HC_gene_0876 11 + 214951 216684 -chrIII 216654 218537 HC_gene_0877 464 + 216654 218329 -chrIII 219277 220460 MC_gene_0878 1 + 219277 220460 -chrIII 223527 224350 HC_gene_0879 9 + 223527 224350 -chrIII 224372 225019 HC_gene_0880 193 + 224372 224858 -chrIII 225536 227882 HC_gene_0881 83 + 225536 227816 -chrIII 228285 229182 HC_gene_0882 5 + 228285 229182 -chrIII 229230 231428 HC_gene_0883 23 + 229230 231331 -chrIII 231448 233151 HC_gene_0884 3 + 231448 233151 -chrIII 237081 240338 HC_gene_0885 142 + 237081 240120 -chrIII 242590 243645 HC_gene_0886 1 + 242590 243642 -chrIII 244493 246361 LC_gene_0887 1 + 244493 246361 -chrIII 246948 248247 HC_gene_0888 90 + 246948 248117 -chrIII 248964 249468 HC_gene_0889 85 + 248964 249322 -chrIII 252842 254291 HC_gene_0890 31 + 252842 254291 -chrIII 258857 259500 HC_gene_0891 312 + 258857 259416 -chrIII 259541 260147 HC_gene_0892 91 + 259541 260079 -chrIII 263340 264147 HC_gene_0893 34 + 263340 264018 -chrIII 265024 267098 HC_gene_0894 175 + 265024 266972 -chrIII 267136 272441 HC_gene_0895 16 + 267136 272321 -chrIII 273102 274307 HC_gene_0896 3 + 273102 274307 -chrIII 274354 277028 HC_gene_0897 3 + 274354 277028 -chrIII 280086 280353 HC_gene_0898 5 + 280086 280353 -chrIII 280430 281766 MC_gene_0899 1 + 280430 281766 -chrIII 281705 282538 MC_gene_0900 1 + 281705 282014 -chrIII 282656 286676 HC_gene_0901 49 + 282656 286528 -chrIII 286697 288248 HC_gene_0902 34 + 286697 288213 -chrIII 289477 291207 HC_gene_0903 13 + 289477 291207 -chrIII 291388 291686 HC_gene_0904 4 + 291388 291686 -chrIII 295488 295889 MC_gene_0905 2 + 295488 295889 -chrIII 298479 299585 LC_gene_0906 1 + 298479 299584 -chrIII 300192 300727 MC_gene_0907 1 + 300192 300727 -chrIII 303212 304207 HC_gene_0908 3 + 303212 304207 -chrIII 305945 308313 LC_gene_0909 1 + 305945 308313 -chrIII 309802 310209 HC_gene_0910 10 + 309802 310209 -chrIII 310381 315299 HC_gene_0911 2 + 310381 315268 -chrIII 1284 1835 LC_gene_0912 1 - 1284 1835 -chrIII 15383 20132 HC_gene_0913 35 - 15383 20132 -chrIII 22193 23405 HC_gene_0914 478 - 22315 23405 -chrIII 23641 24352 HC_gene_0915 771 - 23887 24352 -chrIII 26858 27641 HC_gene_0916 315 - 26903 27641 -chrIII 30782 31198 MC_gene_0917 1 - 30782 31198 -chrIII 33945 35437 HC_gene_0918 74 - 34024 35437 -chrIII 35896 37356 LC_gene_0919 1 - 35896 37356 -chrIII 37522 39448 HC_gene_0920 743 - 37726 39448 -chrIII 39646 40780 HC_gene_0921 133 - 39646 40780 -chrIII 41274 41860 MC_gene_0922 2 - 41274 41860 -chrIII 41844 43221 LC_gene_0923 1 - 41844 43221 -chrIII 43467 44456 HC_gene_0924 125 - 43467 44456 -chrIII 44559 46946 HC_gene_0925 153 - 44572 46946 -chrIII 46934 48395 HC_gene_0926 9 - 46934 48395 -chrIII 48457 50259 HC_gene_0927 1054 - 48553 50259 -chrIII 52378 53943 LC_gene_0928 1 - 52378 53943 -chrIII 54861 56584 HC_gene_0929 58 - 54863 56584 -chrIII 56649 58746 HC_gene_0930 52 - 56799 58746 -chrIII 60510 61238 HC_gene_0931 1375 - 60712 61238 -chrIII 62551 63233 HC_gene_0932 161 - 62697 63233 -chrIII 64348 65602 HC_gene_0933 358 - 64559 65602 -chrIII 65720 68394 HC_gene_0934 735 - 65791 68394 -chrIII 68348 69972 HC_gene_0935 37 - 68348 69972 -chrIII 71372 73065 LC_gene_0936 1 - 71372 73065 -chrIII 73341 74086 HC_gene_0937 70 - 73341 74086 -chrIII 74513 75825 LC_gene_0938 1 - 74513 75825 -chrIII 75851 78283 HC_gene_0939 131 - 75922 78283 -chrIII 81823 82312 LC_gene_0940 1 - 81823 82312 -chrIII 82312 82889 MC_gene_0941 1 - 82316 82889 -chrIII 82671 83514 MC_gene_0942 1 - 82671 83514 -chrIII 84022 85308 MC_gene_0943 1 - 84022 85308 -chrIII 91185 92379 LC_gene_0944 1 - 91185 92379 -chrIII 92381 94365 HC_gene_0945 59 - 92381 94365 -chrIII 94418 95793 HC_gene_0946 13 - 94478 95793 -chrIII 98316 101135 LC_gene_0947 1 - 98316 101135 -chrIII 101159 101823 HC_gene_0948 95 - 101159 101823 -chrIII 101901 104371 HC_gene_0949 373 - 102067 104371 -chrIII 104431 105564 HC_gene_0950 945 - 104470 105564 -chrIII 105533 106845 HC_gene_0951 16 - 105533 106845 -chrIII 107076 108843 MC_gene_0952 1 - 107428 108843 -chrIII 110539 111713 HC_gene_0953 55 - 110539 111713 -chrIII 112511 112896 HC_gene_0954 3 - 112511 112896 -chrIII 113112 114207 HC_gene_0955 4 - 113112 114207 -chrIII 115248 116191 HC_gene_0956 9 - 115248 116191 -chrIII 116752 118404 HC_gene_0957 110 - 116752 118404 -chrIII 118406 118951 MC_gene_0958 1 - 118406 118951 -chrIII 119125 120504 HC_gene_0959 454 - 119134 120504 -chrIII 120613 123450 HC_gene_0960 123 - 120841 123450 -chrIII 124434 124972 HC_gene_0961 4 - 124566 124972 -chrIII 125563 127390 HC_gene_0962 17 - 125563 127390 -chrIII 130058 131907 HC_gene_0963 170 - 130058 131907 -chrIII 132139 133237 MC_gene_0964 1 - 132139 133237 -chrIII 133652 137002 HC_gene_0965 43 - 133664 137002 -chrIII 137560 138988 MC_gene_0966 1 - 137560 138988 -chrIII 139031 140420 MC_gene_0967 1 - 139061 140420 -chrIII 141036 142195 HC_gene_0968 3 - 141049 142195 -chrIII 141135 142546 HC_gene_0969 219 - 141135 142546 -chrIII 143338 143673 MC_gene_0970 1 - 143380 143673 -chrIII 144527 147664 HC_gene_0971 72 - 144569 147664 -chrIII 147707 148593 HC_gene_0972 83 - 147722 148593 -chrIII 149665 152016 MC_gene_0973 1 - 149665 152016 -chrIII 152103 152582 HC_gene_0974 1 - 152201 152582 -chrIII 153933 155115 HC_gene_0975 32 - 153933 155115 -chrIII 154437 155133 HC_gene_0976 98 - 154437 155133 -chrIII 155924 157208 HC_gene_0977 18 - 155925 157208 -chrIII 158098 160428 HC_gene_0978 33 - 158294 160428 -chrIII 160601 162242 HC_gene_0979 8 - 160605 162242 -chrIII 162315 163381 HC_gene_0980 5517 - 162323 163381 -chrIII 163304 166395 HC_gene_0981 31 - 163304 166395 -chrIII 166630 168175 HC_gene_0982 15 - 166630 168175 -chrIII 168720 169271 HC_gene_0983 18 - 168720 169271 -chrIII 169733 172519 HC_gene_0984 23 - 169733 172519 -chrIII 172609 173487 HC_gene_0985 759 - 172642 173487 -chrIII 173646 176524 HC_gene_0986 21 - 173652 176524 -chrIII 176565 176961 HC_gene_0987 58 - 176577 176961 -chrIII 177003 178242 HC_gene_0988 4897 - 177396 178242 -chrIII 178277 178798 HC_gene_0989 24 - 178501 178798 -chrIII 183742 186008 MC_gene_0990 1 - 183742 186008 -chrIII 191013 193037 HC_gene_0991 98 - 191013 193037 -chrIII 194161 197228 HC_gene_0992 22 - 194318 197228 -chrIII 197408 200180 MC_gene_0993 3 - 197408 200180 -chrIII 200979 202043 MC_gene_0994 2 - 200979 202043 -chrIII 202483 205421 HC_gene_0995 2 - 202566 205421 -chrIII 206092 206669 HC_gene_0996 270 - 206092 206669 -chrIII 206697 207961 HC_gene_0997 77 - 206697 207961 -chrIII 208128 208853 LC_gene_0998 1 - 208128 208853 -chrIII 209576 210430 HC_gene_0999 176 - 209711 210430 -chrIII 210502 211635 HC_gene_1000 79 - 210514 211635 -chrIII 211932 213856 LC_gene_1001 1 - 211932 213856 -chrIII 213895 214786 MC_gene_1002 1 - 213895 214786 -chrIII 218149 220118 HC_gene_1003 29 - 218173 220118 -chrIII 220210 223282 HC_gene_1004 46 - 220341 223282 -chrIII 223258 224250 HC_gene_1005 9 - 223258 224250 -chrIII 224515 225200 HC_gene_1006 3 - 224735 225200 -chrIII 227674 228435 LC_gene_1007 1 - 227674 228435 -chrIII 231225 232059 LC_gene_1008 1 - 231225 232059 -chrIII 233031 234699 HC_gene_1009 10 - 233051 234699 -chrIII 234938 236421 HC_gene_1010 2 - 235143 236421 -chrIII 237036 238646 MC_gene_1011 1 - 237036 238646 -chrIII 239794 240593 HC_gene_1012 138 - 240030 240593 -chrIII 240613 242378 HC_gene_1013 54 - 240721 242378 -chrIII 242495 246649 HC_gene_1014 7 - 242513 246649 -chrIII 247637 248811 HC_gene_1015 28 - 247886 248811 -chrIII 249042 250047 HC_gene_1016 78 - 249186 250047 -chrIII 250093 252671 HC_gene_1017 42 - 250093 252671 -chrIII 253190 254200 MC_gene_1018 1 - 253222 254200 -chrIII 258095 258650 MC_gene_1019 1 - 258095 258650 -chrIII 259134 259743 MC_gene_1020 1 - 259269 259743 -chrIII 259743 262666 HC_gene_1021 30 - 259969 262666 -chrIII 263018 263198 HC_gene_1022 1 - 263040 263198 -chrIII 263583 264494 HC_gene_1023 210 - 263785 264494 -chrIII 272062 272878 HC_gene_1024 145 - 272240 272878 -chrIII 273333 274032 LC_gene_1025 1 - 273333 274032 -chrIII 275678 276247 LC_gene_1026 1 - 275678 276247 -chrIII 276522 279857 HC_gene_1027 3 - 276582 279857 -chrIII 287888 289300 HC_gene_1028 28 - 287888 289300 -chrIII 296789 299054 HC_gene_1029 2 - 296789 299054 -chrIII 299920 300508 MC_gene_1030 1 - 299920 300508 -chrIII 300577 302999 HC_gene_1031 7 - 300577 302999 -chrIII 304282 305526 MC_gene_1032 1 - 304282 305526 -chrIII 308687 309966 HC_gene_1033 4 - 308687 309966 -chrIII 310143 310679 LC_gene_1034 1 - 310143 310679 -chrIII 311674 313712 LC_gene_1035 1 - 311674 313712 -chrIV 1793 4995 MC_gene_1036 1 + 1793 4995 -chrIV 7030 8335 LC_gene_1037 1 + 7030 8335 -chrIV 9918 11333 LC_gene_1038 1 + 9918 11333 -chrIV 11745 15155 LC_gene_1039 1 + 11745 15155 -chrIV 16194 17340 LC_gene_1040 1 + 16194 17340 -chrIV 20177 20596 HC_gene_1041 24 + 20177 20596 -chrIV 20551 21815 HC_gene_1042 77 + 20551 21803 -chrIV 21835 22602 MC_gene_1043 1 + 21835 22602 -chrIV 22649 26213 HC_gene_1044 14 + 22649 26115 -chrIV 30637 32127 HC_gene_1045 95 + 30637 32127 -chrIV 32233 33385 HC_gene_1046 242 + 32233 33369 -chrIV 33405 34070 MC_gene_1047 1 + 33405 34070 -chrIV 36779 38386 HC_gene_1048 16 + 36779 38342 -chrIV 38466 39079 HC_gene_1049 336 + 38466 38886 -chrIV 42668 43846 HC_gene_1050 68 + 42668 43770 -chrIV 44033 46401 HC_gene_1051 2395 + 44033 46010 -chrIV 47196 48149 LC_gene_1052 1 + 47196 48149 -chrIV 49876 51000 HC_gene_1053 23 + 49876 50930 -chrIV 52393 54362 HC_gene_1054 58 + 52393 54362 -chrIV 57045 57836 MC_gene_1055 1 + 57045 57836 -chrIV 59131 60595 HC_gene_1056 3 + 59131 60580 -chrIV 61154 63882 MC_gene_1057 2 + 61154 63882 -chrIV 65225 66060 HC_gene_1058 102 + 65225 66060 -chrIV 66027 67656 MC_gene_1059 1 + 66027 67656 -chrIV 69004 70564 LC_gene_1060 1 + 69004 70564 -chrIV 73585 74272 HC_gene_1061 7 + 73585 74065 -chrIV 74407 76724 MC_gene_1062 1 + 74407 76724 -chrIV 74611 77423 MC_gene_1063 1 + 74611 77423 -chrIV 78402 79412 HC_gene_1064 383 + 78402 79203 -chrIV 80696 83389 HC_gene_1065 2 + 80696 83389 -chrIV 85633 86081 HC_gene_1066 4 + 85633 86081 -chrIV 87480 88188 HC_gene_1067 875 + 87480 88122 -chrIV 88208 89992 HC_gene_1068 40 + 88208 89945 -chrIV 90025 92491 HC_gene_1069 4 + 90025 92491 -chrIV 94105 94582 HC_gene_1070 11 + 94105 94582 -chrIV 94597 95966 HC_gene_1071 25 + 94597 95966 -chrIV 98429 99445 HC_gene_1072 75 + 98429 99445 -chrIV 99526 100647 HC_gene_1073 113 + 99526 100506 -chrIV 101661 103563 LC_gene_1074 1 + 101661 103563 -chrIV 103615 104756 HC_gene_1075 1 + 103615 104756 -chrIV 104834 105304 MC_gene_1076 1 + 104834 105112 -chrIV 107077 111263 HC_gene_1077 276 + 107077 111173 -chrIV 111370 114291 HC_gene_1078 4 + 111370 114288 -chrIV 114563 116053 HC_gene_1079 55 + 114563 116004 -chrIV 116276 117481 HC_gene_1080 1772 + 116276 117409 -chrIV 117606 118712 HC_gene_1081 133 + 117606 118712 -chrIV 118146 119048 HC_gene_1082 3671 + 118146 118717 -chrIV 122021 123772 HC_gene_1083 23 + 122021 123684 -chrIV 124876 125715 LC_gene_1084 1 + 124876 125715 -chrIV 126687 130382 HC_gene_1085 564 + 126687 130123 -chrIV 130937 131530 MC_gene_1086 1 + 130937 131530 -chrIV 132141 132666 LC_gene_1087 1 + 132141 132662 -chrIV 133404 134936 HC_gene_1088 908 + 133404 134812 -chrIV 135014 135605 HC_gene_1089 140 + 135014 135556 -chrIV 135716 137697 HC_gene_1090 21 + 135716 137697 -chrIV 138084 139424 HC_gene_1091 41 + 138084 139399 -chrIV 139504 141366 HC_gene_1092 68 + 139504 141179 -chrIV 141955 144411 HC_gene_1093 3 + 141955 144334 -chrIV 145775 147792 MC_gene_1094 1 + 145775 147792 -chrIV 147024 148099 MC_gene_1095 1 + 147024 148043 -chrIV 148146 149523 HC_gene_1096 170 + 148146 149205 -chrIV 149523 149996 LC_gene_1097 1 + 149523 149996 -chrIV 156316 158167 HC_gene_1098 32 + 156316 158091 -chrIV 158697 159295 LC_gene_1099 1 + 158697 159295 -chrIV 159569 161013 HC_gene_1100 154 + 159569 160970 -chrIV 162652 163456 MC_gene_1101 1 + 162652 163451 -chrIV 163456 164172 LC_gene_1102 1 + 163456 164172 -chrIV 164239 165151 HC_gene_1103 77 + 164239 164985 -chrIV 167696 169389 HC_gene_1104 132 + 167696 169304 -chrIV 172433 174174 MC_gene_1105 2 + 172433 174174 -chrIV 173562 174353 MC_gene_1106 1 + 173562 174280 -chrIV 174833 178280 HC_gene_1107 21 + 174833 178197 -chrIV 179999 181226 HC_gene_1108 7 + 179999 181226 -chrIV 183246 184857 HC_gene_1109 70 + 183246 184738 -chrIV 184893 188016 HC_gene_1110 4 + 184893 188016 -chrIV 190895 192644 HC_gene_1111 411 + 190895 192644 -chrIV 192592 194519 HC_gene_1112 15 + 192592 194519 -chrIV 198652 199324 LC_gene_1113 1 + 198652 199133 -chrIV 199959 201846 HC_gene_1114 295 + 199959 201845 -chrIV 202798 205381 HC_gene_1115 23 + 202798 205375 -chrIV 212249 212529 HC_gene_1116 3 + 212249 212529 -chrIV 213072 215909 HC_gene_1117 6 + 213072 215788 -chrIV 216101 217425 HC_gene_1118 883 + 216101 217228 -chrIV 217565 218799 HC_gene_1119 1986 + 217565 218456 -chrIV 219039 219819 HC_gene_1120 6 + 219039 219759 -chrIV 220966 221720 HC_gene_1121 10 + 220966 221643 -chrIV 222005 223968 HC_gene_1122 52 + 222005 223840 -chrIV 224037 226954 HC_gene_1123 51 + 224037 226914 -chrIV 227355 229055 HC_gene_1124 319 + 227355 229022 -chrIV 229104 229598 HC_gene_1125 354 + 229104 229586 -chrIV 229887 230815 HC_gene_1126 4821 + 229887 230625 -chrIV 230978 232359 HC_gene_1127 15 + 230978 232346 -chrIV 232593 234123 HC_gene_1128 127 + 232593 234051 -chrIV 234855 236327 HC_gene_1129 59 + 234855 236021 -chrIV 238936 239528 MC_gene_1130 1 + 238936 239528 -chrIV 239856 241270 HC_gene_1131 456 + 239856 241270 -chrIV 241276 242476 HC_gene_1132 43 + 241276 242476 -chrIV 242310 245169 HC_gene_1133 122 + 242310 245065 -chrIV 245835 246776 HC_gene_1134 155 + 245835 246603 -chrIV 248282 251466 HC_gene_1135 13 + 248282 251391 -chrIV 251527 254043 HC_gene_1136 27 + 251527 253993 -chrIV 254180 255077 HC_gene_1137 3 + 254180 255077 -chrIV 255624 256587 LC_gene_1138 1 + 255624 256587 -chrIV 258833 263481 HC_gene_1139 17 + 258833 263335 -chrIV 264415 265077 HC_gene_1140 2 + 264415 265077 -chrIV 267669 268756 HC_gene_1141 44 + 267669 268754 -chrIV 268898 270094 HC_gene_1142 39 + 268898 270091 -chrIV 272195 273718 HC_gene_1143 12 + 272195 273714 -chrIV 274524 275159 LC_gene_1144 1 + 274524 275159 -chrIV 276789 280324 HC_gene_1145 9 + 276789 280277 -chrIV 283360 284758 HC_gene_1146 203 + 283360 284533 -chrIV 287028 289808 HC_gene_1147 146 + 287028 289714 -chrIV 289878 292519 HC_gene_1148 22 + 289878 292428 -chrIV 292757 293642 HC_gene_1149 298 + 292757 293417 -chrIV 294979 295551 MC_gene_1150 1 + 294979 295549 -chrIV 296525 298350 HC_gene_1151 27 + 296525 298350 -chrIV 301410 302609 HC_gene_1152 188 + 301410 302431 -chrIV 303159 305017 MC_gene_1153 1 + 303159 305017 -chrIV 305075 306893 HC_gene_1154 604 + 305075 306710 -chrIV 308384 309744 HC_gene_1155 1904 + 308384 309531 -chrIV 310513 311239 LC_gene_1156 1 + 310513 311231 -chrIV 312877 314234 HC_gene_1157 11 + 312877 314202 -chrIV 314476 314794 LC_gene_1158 1 + 314476 314794 -chrIV 315203 316272 LC_gene_1159 1 + 315203 316272 -chrIV 316567 316912 HC_gene_1160 5 + 316567 316912 -chrIV 320415 321046 HC_gene_1161 8 + 320415 320876 -chrIV 322193 323294 HC_gene_1162 6574 + 322193 323058 -chrIV 323294 323789 LC_gene_1163 1 + 323294 323789 -chrIV 323790 324500 HC_gene_1164 18 + 323790 324500 -chrIV 326431 329763 HC_gene_1165 5 + 326431 329717 -chrIV 329901 330366 LC_gene_1166 1 + 329901 330265 -chrIV 330710 333413 HC_gene_1167 282 + 330710 333206 -chrIV 334808 336528 HC_gene_1168 288 + 334808 336527 -chrIV 337442 338279 HC_gene_1169 172 + 337442 338205 -chrIV 340461 340899 MC_gene_1170 1 + 340461 340899 -chrIV 341566 344054 HC_gene_1171 29 + 341566 344054 -chrIV 342455 344321 HC_gene_1172 11 + 342455 344223 -chrIV 344694 345278 LC_gene_1173 1 + 344694 345278 -chrIV 345627 351258 HC_gene_1174 103 + 345627 351192 -chrIV 351425 352467 HC_gene_1175 10 + 351425 352467 -chrIV 352760 355485 HC_gene_1176 8 + 352760 355447 -chrIV 355747 357693 LC_gene_1177 1 + 355747 357654 -chrIV 357713 359271 HC_gene_1178 8 + 357713 359092 -chrIV 359578 359817 MC_gene_1179 1 + 359578 359817 -chrIV 359804 360884 MC_gene_1180 1 + 359804 360884 -chrIV 361780 362643 HC_gene_1181 2 + 361780 362643 -chrIV 363921 365419 HC_gene_1182 297 + 363921 365046 -chrIV 365498 365877 LC_gene_1183 1 + 365498 365877 -chrIV 366362 367221 HC_gene_1184 1 + 366362 366745 -chrIV 369311 371116 HC_gene_1185 91 + 369311 371058 -chrIV 371171 372155 HC_gene_1186 404 + 371171 372039 -chrIV 372202 372839 HC_gene_1187 258 + 372202 372662 -chrIV 373942 374545 LC_gene_1188 1 + 373942 374545 -chrIV 375365 375739 LC_gene_1189 1 + 375365 375739 -chrIV 378063 378879 MC_gene_1190 1 + 378063 378879 -chrIV 378793 379136 MC_gene_1191 1 + 378793 379136 -chrIV 381678 381953 HC_gene_1192 6 + 381678 381953 -chrIV 386236 389153 HC_gene_1193 7 + 386236 389153 -chrIV 394163 397428 HC_gene_1194 60 + 394163 397296 -chrIV 397469 399262 HC_gene_1195 17 + 397469 399197 -chrIV 399318 400942 HC_gene_1196 233 + 399318 400939 -chrIV 404490 405239 MC_gene_1197 1 + 404490 405238 -chrIV 405288 407942 MC_gene_1198 1 + 405288 407942 -chrIV 407647 408496 MC_gene_1199 2 + 407647 408366 -chrIV 409454 410249 MC_gene_1200 1 + 409454 410249 -chrIV 410392 410636 MC_gene_1201 1 + 410392 410636 -chrIV 411685 413238 HC_gene_1202 263 + 411685 413232 -chrIV 413927 415158 HC_gene_1203 37 + 413927 415148 -chrIV 417269 418912 MC_gene_1204 1 + 417269 418912 -chrIV 417445 420280 MC_gene_1205 1 + 417445 420280 -chrIV 421938 422503 MC_gene_1206 1 + 421938 422503 -chrIV 423710 424078 HC_gene_1207 1 + 423710 423987 -chrIV 424200 425965 HC_gene_1208 10 + 424200 425862 -chrIV 425994 427021 MC_gene_1209 1 + 425994 427021 -chrIV 427220 428805 HC_gene_1210 1332 + 427220 428563 -chrIV 428930 431272 HC_gene_1211 21 + 428930 431163 -chrIV 432300 433401 HC_gene_1212 80 + 432300 433388 -chrIV 433474 434263 HC_gene_1213 90 + 433474 434109 -chrIV 438007 439503 HC_gene_1214 454 + 438007 439439 -chrIV 439586 441509 HC_gene_1215 44 + 439586 441509 -chrIV 442581 442824 LC_gene_1216 1 + 442581 442821 -chrIV 442984 443940 HC_gene_1217 665 + 442984 443756 -chrIV 444557 446755 HC_gene_1218 41 + 444557 446514 -chrIV 447924 449498 HC_gene_1219 2 + 447924 449495 -chrIV 450007 450239 MC_gene_1220 1 + 450007 450239 -chrIV 450911 451462 LC_gene_1221 1 + 450911 451462 -chrIV 452828 453989 HC_gene_1222 1339 + 452828 453966 -chrIV 454083 455238 HC_gene_1223 128 + 454083 455238 -chrIV 455213 456841 HC_gene_1224 43 + 455213 456748 -chrIV 457358 458047 MC_gene_1225 1 + 457358 458047 -chrIV 461644 462874 HC_gene_1226 123 + 461644 462874 -chrIV 463912 465631 MC_gene_1227 1 + 463912 465631 -chrIV 465596 470779 HC_gene_1228 136 + 465596 470606 -chrIV 470943 471867 HC_gene_1229 4 + 470943 471867 -chrIV 471819 473223 HC_gene_1230 1622 + 471819 473223 -chrIV 473139 473882 HC_gene_1231 46 + 473139 473873 -chrIV 473993 476394 HC_gene_1232 6 + 473993 476394 -chrIV 477775 478428 HC_gene_1233 4 + 477775 478428 -chrIV 482618 483377 MC_gene_1234 1 + 482618 483377 -chrIV 483663 484058 MC_gene_1235 1 + 483663 484058 -chrIV 485255 486416 LC_gene_1236 1 + 485255 486416 -chrIV 486723 488168 HC_gene_1237 28 + 486723 488057 -chrIV 489483 491117 HC_gene_1238 888 + 489483 491044 -chrIV 491314 492436 HC_gene_1239 2405 + 491314 492414 -chrIV 492436 493626 LC_gene_1240 1 + 492436 493626 -chrIV 501380 501713 HC_gene_1241 21 + 501380 501703 -chrIV 501775 502345 MC_gene_1242 1 + 501775 502129 -chrIV 503489 504238 HC_gene_1243 125 + 503489 504030 -chrIV 505087 505411 MC_gene_1244 1 + 505087 505411 -chrIV 505905 506530 MC_gene_1245 1 + 505905 506530 -chrIV 506550 509939 HC_gene_1246 1939 + 506550 509750 -chrIV 512557 513672 HC_gene_1247 20 + 512557 513667 -chrIV 517987 519420 LC_gene_1248 1 + 517987 519420 -chrIV 520043 521209 LC_gene_1249 1 + 520043 521209 -chrIV 521673 523430 HC_gene_1250 673 + 521673 523206 -chrIV 524988 525383 HC_gene_1251 13 + 524988 525383 -chrIV 525417 527550 HC_gene_1252 1008 + 525417 527298 -chrIV 527631 538563 MC_gene_1253 1 + 527631 538563 -chrIV 539761 540680 HC_gene_1254 140 + 539761 540603 -chrIV 542057 542676 MC_gene_1255 1 + 542057 542676 -chrIV 542334 542693 MC_gene_1256 1 + 542334 542693 -chrIV 542578 543599 MC_gene_1257 1 + 542578 543599 -chrIV 544073 544826 HC_gene_1258 39 + 544073 544826 -chrIV 545318 545847 LC_gene_1259 1 + 545318 545847 -chrIV 546597 547905 HC_gene_1260 345 + 546597 547772 -chrIV 551734 553057 HC_gene_1261 180 + 551734 553041 -chrIV 553224 555312 HC_gene_1262 12 + 553224 555312 -chrIV 556744 557477 HC_gene_1263 4 + 556744 557096 -chrIV 560717 561076 MC_gene_1264 1 + 560717 561076 -chrIV 563231 565106 HC_gene_1265 267 + 563231 565021 -chrIV 565877 567743 HC_gene_1266 25 + 565877 567743 -chrIV 567656 568749 MC_gene_1267 1 + 567656 568749 -chrIV 570058 570630 HC_gene_1268 6 + 570058 570630 -chrIV 570565 572233 HC_gene_1269 2 + 570565 572198 -chrIV 572253 572779 HC_gene_1270 1 + 572253 572616 -chrIV 572799 574139 HC_gene_1271 85 + 572799 574139 -chrIV 574145 575972 HC_gene_1272 31 + 574145 575920 -chrIV 576094 579230 HC_gene_1273 304 + 576094 579183 -chrIV 579423 580603 HC_gene_1274 4207 + 579423 580533 -chrIV 580640 582578 HC_gene_1275 15 + 580640 582578 -chrIV 582944 583585 MC_gene_1276 1 + 582944 583574 -chrIV 583671 585055 HC_gene_1277 135 + 583671 585055 -chrIV 585621 586478 MC_gene_1278 1 + 585621 586478 -chrIV 588008 588864 HC_gene_1279 1 + 588008 588864 -chrIV 589769 590096 MC_gene_1280 1 + 589769 590069 -chrIV 591010 591585 HC_gene_1281 1 + 591010 591585 -chrIV 591629 592128 HC_gene_1282 2 + 591629 592128 -chrIV 592361 593380 HC_gene_1283 175 + 592361 593232 -chrIV 593686 596899 HC_gene_1284 87 + 593686 596861 -chrIV 596982 598480 HC_gene_1285 53 + 596982 598480 -chrIV 598411 599021 HC_gene_1286 7 + 598411 598972 -chrIV 600521 602810 HC_gene_1287 7340 + 600521 602810 -chrIV 603041 603787 HC_gene_1288 115 + 603041 603744 -chrIV 603974 607295 HC_gene_1289 7 + 603974 607295 -chrIV 610360 612071 HC_gene_1290 17 + 610360 612071 -chrIV 612049 613607 HC_gene_1291 106 + 612049 613435 -chrIV 614238 616304 MC_gene_1292 1 + 614238 616304 -chrIV 616312 616904 HC_gene_1293 2 + 616312 616904 -chrIV 617457 618423 HC_gene_1294 13 + 617457 618423 -chrIV 620415 620995 LC_gene_1295 1 + 620415 620995 -chrIV 621989 625005 HC_gene_1296 24 + 621989 624901 -chrIV 625382 626481 MC_gene_1297 1 + 625382 626481 -chrIV 629851 630828 HC_gene_1298 283 + 629851 630824 -chrIV 631258 634245 HC_gene_1299 3 + 631258 633316 -chrIV 634536 636208 HC_gene_1300 7 + 634536 636181 -chrIV 636572 640039 HC_gene_1301 16 + 636572 640039 -chrIV 644200 644882 LC_gene_1302 1 + 644200 644882 -chrIV 650520 651914 LC_gene_1303 1 + 650520 651914 -chrIV 652717 654772 HC_gene_1304 726 + 652717 654772 -chrIV 653576 655729 HC_gene_1305 296 + 653576 655729 -chrIV 657770 661244 HC_gene_1306 10 + 657770 661228 -chrIV 665122 665372 HC_gene_1307 1 + 665122 665372 -chrIV 666980 667908 HC_gene_1308 2 + 666980 667908 -chrIV 668291 671129 MC_gene_1309 4 + 668291 671107 -chrIV 671254 673463 HC_gene_1310 12 + 671254 673456 -chrIV 676045 678010 HC_gene_1311 21 + 676045 678009 -chrIV 678209 679228 LC_gene_1312 1 + 678209 679228 -chrIV 680210 680503 HC_gene_1313 7 + 680210 680503 -chrIV 680521 681450 MC_gene_1314 1 + 680521 681450 -chrIV 682048 682843 HC_gene_1315 180 + 682048 682723 -chrIV 683749 684041 MC_gene_1316 1 + 683749 683964 -chrIV 685850 688171 HC_gene_1317 5 + 685850 688171 -chrIV 688141 690679 HC_gene_1318 67 + 688141 690593 -chrIV 690964 691485 MC_gene_1319 2 + 690964 691485 -chrIV 693475 694358 HC_gene_1320 105 + 693475 694284 -chrIV 694410 698277 HC_gene_1321 6 + 694410 698047 -chrIV 699734 701830 HC_gene_1322 16 + 699734 701830 -chrIV 703141 703760 HC_gene_1323 2 + 703141 703488 -chrIV 704078 708768 HC_gene_1324 15 + 704078 705551 -chrIV 708788 709472 HC_gene_1325 42 + 708788 709304 -chrIV 709503 713252 HC_gene_1326 17 + 709503 713252 -chrIV 715686 716122 MC_gene_1327 1 + 715686 716122 -chrIV 718673 719854 HC_gene_1328 2 + 718673 719854 -chrIV 720226 720456 MC_gene_1329 1 + 720226 720456 -chrIV 720620 721009 HC_gene_1330 12 + 720620 721005 -chrIV 722294 723003 HC_gene_1331 1 + 722294 722993 -chrIV 723023 726289 MC_gene_1332 2 + 723023 726289 -chrIV 727863 728133 LC_gene_1333 1 + 727863 728094 -chrIV 728172 733582 HC_gene_1334 35 + 728172 733560 -chrIV 733655 734161 HC_gene_1335 3 + 733655 734161 -chrIV 734122 735282 HC_gene_1336 70 + 734122 735207 -chrIV 736176 738410 LC_gene_1337 1 + 736176 738410 -chrIV 742487 743417 LC_gene_1338 1 + 742487 743417 -chrIV 743480 744017 MC_gene_1339 1 + 743480 744017 -chrIV 744252 745624 MC_gene_1340 1 + 744252 745624 -chrIV 746678 748557 HC_gene_1341 105 + 746678 748557 -chrIV 751181 753382 HC_gene_1342 13 + 751181 753267 -chrIV 754416 755231 LC_gene_1343 1 + 754416 755182 -chrIV 755722 760190 MC_gene_1344 1 + 755722 759989 -chrIV 761713 763990 HC_gene_1345 3 + 761713 763926 -chrIV 763990 764445 MC_gene_1346 1 + 763990 764445 -chrIV 764168 764550 MC_gene_1347 1 + 764168 764535 -chrIV 764828 766814 HC_gene_1348 222 + 764828 766549 -chrIV 768309 768482 MC_gene_1349 1 + 768309 768482 -chrIV 769191 769465 MC_gene_1350 1 + 769191 769465 -chrIV 769489 770225 HC_gene_1351 295 + 769489 770033 -chrIV 770320 771718 HC_gene_1352 1244 + 770320 771581 -chrIV 771778 775891 HC_gene_1353 9 + 771778 775823 -chrIV 775983 776457 HC_gene_1354 2 + 775983 776437 -chrIV 776457 777461 MC_gene_1355 1 + 776457 777414 -chrIV 779018 780567 HC_gene_1356 125 + 779018 780393 -chrIV 781348 782191 HC_gene_1357 123 + 781348 782056 -chrIV 784832 786854 HC_gene_1358 55 + 784832 786854 -chrIV 789412 790236 HC_gene_1359 218 + 789412 790190 -chrIV 790286 792147 HC_gene_1360 23 + 790286 792128 -chrIV 794518 795282 MC_gene_1361 1 + 794518 795113 -chrIV 803874 806734 HC_gene_1362 22 + 803874 806576 -chrIV 807061 807866 MC_gene_1363 4 + 807061 807866 -chrIV 808269 810710 HC_gene_1364 232 + 808269 810559 -chrIV 812085 813272 HC_gene_1365 379 + 812085 813221 -chrIV 814421 816891 HC_gene_1366 48 + 814421 816891 -chrIV 816778 817742 HC_gene_1367 329 + 816778 817670 -chrIV 817846 818768 HC_gene_1368 345 + 817846 818699 -chrIV 819333 820979 HC_gene_1369 17 + 819333 820873 -chrIV 821147 825863 HC_gene_1370 2 + 821147 825826 -chrIV 827550 829419 HC_gene_1371 92 + 827550 829419 -chrIV 829568 830490 HC_gene_1372 54 + 829568 830490 -chrIV 831790 832856 MC_gene_1373 3 + 831790 832856 -chrIV 836129 838306 HC_gene_1374 397 + 836129 838230 -chrIV 838348 840551 HC_gene_1375 79 + 838348 840533 -chrIV 842320 843617 HC_gene_1376 12 + 842320 843558 -chrIV 843852 845274 LC_gene_1377 1 + 843852 845266 -chrIV 845480 846021 HC_gene_1378 4 + 845480 846021 -chrIV 848358 850355 HC_gene_1379 46 + 848358 850286 -chrIV 851193 852642 HC_gene_1380 37 + 851193 852617 -chrIV 856311 857346 HC_gene_1381 117 + 856311 857346 -chrIV 858107 859282 HC_gene_1382 70 + 858107 859277 -chrIV 859324 861618 HC_gene_1383 16 + 859324 861618 -chrIV 861705 864984 HC_gene_1384 21 + 861705 864939 -chrIV 868098 870917 HC_gene_1385 30 + 868098 870681 -chrIV 871040 871834 HC_gene_1386 251 + 871040 871657 -chrIV 873272 875388 MC_gene_1387 1 + 873272 875388 -chrIV 874541 877784 MC_gene_1388 1 + 874541 877784 -chrIV 875745 877871 MC_gene_1389 1 + 875745 877871 -chrIV 883470 884278 MC_gene_1390 1 + 883470 884261 -chrIV 884686 887110 HC_gene_1391 93 + 884686 887018 -chrIV 887165 889243 HC_gene_1392 323 + 887165 889099 -chrIV 889501 892768 HC_gene_1393 1 + 889501 892768 -chrIV 892244 892846 HC_gene_1394 1 + 892244 892846 -chrIV 892757 894028 HC_gene_1395 162 + 892757 894026 -chrIV 894525 899653 HC_gene_1396 1 + 894525 899624 -chrIV 904290 905128 HC_gene_1397 5 + 904290 905128 -chrIV 907333 910082 HC_gene_1398 19 + 907333 910082 -chrIV 909858 911543 HC_gene_1399 12 + 909858 911466 -chrIV 911743 913804 HC_gene_1400 3 + 911743 913804 -chrIV 913932 914282 MC_gene_1401 1 + 913932 914282 -chrIV 915456 916395 HC_gene_1402 2954 + 915456 916090 -chrIV 916461 917424 HC_gene_1403 1771 + 916461 917283 -chrIV 917444 921977 HC_gene_1404 4 + 917444 921977 -chrIV 922975 924469 LC_gene_1405 1 + 922975 924219 -chrIV 924682 926354 HC_gene_1406 50 + 924682 926223 -chrIV 927190 929431 HC_gene_1407 101 + 927190 929275 -chrIV 930450 933407 HC_gene_1408 79 + 930450 933380 -chrIV 933502 935564 HC_gene_1409 23 + 933502 935564 -chrIV 936148 936430 LC_gene_1410 1 + 936148 936430 -chrIV 936471 937787 HC_gene_1411 56 + 936471 937783 -chrIV 945329 946012 HC_gene_1412 62 + 945329 945854 -chrIV 946716 948557 HC_gene_1413 12 + 946716 948557 -chrIV 950536 952601 HC_gene_1414 18 + 950536 952599 -chrIV 952735 954231 HC_gene_1415 136 + 952735 954137 -chrIV 954274 955150 HC_gene_1416 22 + 954274 955102 -chrIV 955662 957765 HC_gene_1417 29 + 955662 957765 -chrIV 957825 958689 MC_gene_1418 1 + 957825 958689 -chrIV 960324 963284 HC_gene_1419 48 + 960324 963284 -chrIV 963402 964756 HC_gene_1420 17 + 963402 964756 -chrIV 965024 967108 HC_gene_1421 12 + 965024 967054 -chrIV 968061 969862 HC_gene_1422 6 + 968061 969774 -chrIV 976514 977519 MC_gene_1423 1 + 976514 977518 -chrIV 977519 978753 LC_gene_1424 1 + 977519 978753 -chrIV 978838 979344 MC_gene_1425 1 + 978838 979344 -chrIV 979511 980188 HC_gene_1426 16 + 979511 980188 -chrIV 982033 983258 MC_gene_1427 1 + 982033 983258 -chrIV 992840 993144 HC_gene_1428 2 + 992840 993144 -chrIV 993185 994442 HC_gene_1429 96 + 993185 994439 -chrIV 998695 1000220 HC_gene_1430 30 + 998695 1000066 -chrIV 1003964 1005270 HC_gene_1431 25 + 1003964 1005254 -chrIV 1005594 1008824 HC_gene_1432 7 + 1005594 1008769 -chrIV 1008971 1009968 HC_gene_1433 173 + 1008971 1009942 -chrIV 1010131 1011309 HC_gene_1434 1 + 1010131 1011309 -chrIV 1011571 1013398 HC_gene_1435 65 + 1011571 1013199 -chrIV 1013398 1014286 MC_gene_1436 1 + 1013398 1014286 -chrIV 1015064 1016966 MC_gene_1437 1 + 1015064 1016966 -chrIV 1017817 1018106 LC_gene_1438 1 + 1017817 1018106 -chrIV 1019098 1020689 HC_gene_1439 39 + 1019098 1020689 -chrIV 1019299 1021985 HC_gene_1440 85 + 1019299 1021769 -chrIV 1022680 1023107 HC_gene_1441 1 + 1022680 1023107 -chrIV 1024939 1025390 LC_gene_1442 1 + 1024939 1025390 -chrIV 1030263 1030531 LC_gene_1443 1 + 1030263 1030502 -chrIV 1030531 1031758 MC_gene_1444 1 + 1030531 1031758 -chrIV 1034622 1035244 HC_gene_1445 2 + 1034622 1035244 -chrIV 1035781 1038328 HC_gene_1446 103 + 1035781 1038266 -chrIV 1039728 1043165 HC_gene_1447 15 + 1039728 1043165 -chrIV 1045368 1045791 MC_gene_1448 1 + 1045368 1045791 -chrIV 1049761 1050520 MC_gene_1449 2 + 1049761 1050520 -chrIV 1055157 1056169 HC_gene_1450 150 + 1055157 1056060 -chrIV 1056527 1057814 HC_gene_1451 448 + 1056527 1057726 -chrIV 1059565 1061539 HC_gene_1452 71 + 1059565 1061497 -chrIV 1063291 1067600 HC_gene_1453 7 + 1063291 1067560 -chrIV 1067686 1068617 HC_gene_1454 86 + 1067686 1068597 -chrIV 1071257 1071889 MC_gene_1455 1 + 1071257 1071889 -chrIV 1071890 1073176 HC_gene_1456 2 + 1071890 1072812 -chrIV 1074171 1074805 LC_gene_1457 1 + 1074171 1074805 -chrIV 1075820 1078006 HC_gene_1458 16 + 1075820 1078006 -chrIV 1078738 1079463 LC_gene_1459 1 + 1078738 1079463 -chrIV 1080795 1081210 HC_gene_1460 11 + 1080795 1081067 -chrIV 1081210 1081660 LC_gene_1461 1 + 1081210 1081660 -chrIV 1085038 1087232 HC_gene_1462 20 + 1085038 1087095 -chrIV 1087547 1089289 HC_gene_1463 30 + 1087547 1089098 -chrIV 1090453 1091078 LC_gene_1464 1 + 1090453 1091078 -chrIV 1092732 1093471 HC_gene_1465 2 + 1092732 1093471 -chrIV 1093757 1095353 HC_gene_1466 45 + 1093757 1095254 -chrIV 1095626 1096124 MC_gene_1467 1 + 1095626 1096124 -chrIV 1097131 1101694 MC_gene_1468 1 + 1097131 1101694 -chrIV 1098172 1102019 MC_gene_1469 1 + 1098172 1102019 -chrIV 1102148 1103557 HC_gene_1470 6 + 1102148 1103557 -chrIV 1103684 1105132 HC_gene_1471 11 + 1103684 1105053 -chrIV 1106068 1106402 MC_gene_1472 1 + 1106068 1106402 -chrIV 1108244 1110090 HC_gene_1473 132 + 1108244 1109998 -chrIV 1110561 1111963 HC_gene_1474 46 + 1110561 1111754 -chrIV 1112452 1114117 LC_gene_1475 1 + 1112452 1114117 -chrIV 1114355 1114879 MC_gene_1476 1 + 1114355 1114879 -chrIV 1117115 1120471 HC_gene_1477 1 + 1117115 1120298 -chrIV 1125356 1126134 LC_gene_1478 1 + 1125356 1126134 -chrIV 1127807 1129577 HC_gene_1479 18 + 1127807 1129577 -chrIV 1129556 1130947 HC_gene_1480 25 + 1129556 1130940 -chrIV 1130977 1133144 HC_gene_1481 14 + 1130977 1133144 -chrIV 1135766 1137347 HC_gene_1482 1 + 1135766 1137002 -chrIV 1139204 1140599 HC_gene_1483 24 + 1139204 1140598 -chrIV 1140809 1142439 HC_gene_1484 3 + 1140809 1141128 -chrIV 1143372 1144924 HC_gene_1485 46 + 1143372 1144924 -chrIV 1145067 1146237 HC_gene_1486 36 + 1145067 1146237 -chrIV 1146238 1147240 HC_gene_1487 81 + 1146238 1147240 -chrIV 1147215 1149562 LC_gene_1488 1 + 1147215 1149562 -chrIV 1149996 1150597 LC_gene_1489 1 + 1149996 1150597 -chrIV 1151144 1151779 LC_gene_1490 1 + 1151144 1151779 -chrIV 1153540 1154162 MC_gene_1491 1 + 1153540 1154162 -chrIV 1156629 1157896 MC_gene_1492 1 + 1156629 1157896 -chrIV 1157564 1158087 MC_gene_1493 1 + 1157564 1158087 -chrIV 1157695 1158768 MC_gene_1494 1 + 1157695 1158768 -chrIV 1157832 1158951 MC_gene_1495 1 + 1157832 1158951 -chrIV 1162084 1163174 HC_gene_1496 27 + 1162084 1162921 -chrIV 1165429 1165635 MC_gene_1497 1 + 1165429 1165635 -chrIV 1165559 1166220 MC_gene_1498 1 + 1165559 1166077 -chrIV 1166698 1167030 HC_gene_1499 34 + 1166698 1167030 -chrIV 1167079 1168936 MC_gene_1500 1 + 1167079 1168936 -chrIV 1169112 1170407 HC_gene_1501 52 + 1169112 1170261 -chrIV 1172279 1173025 LC_gene_1502 1 + 1172279 1172986 -chrIV 1174467 1174915 HC_gene_1503 12 + 1174467 1174856 -chrIV 1175027 1175765 HC_gene_1504 34 + 1175027 1175723 -chrIV 1178443 1181426 HC_gene_1505 12 + 1178443 1181410 -chrIV 1181631 1184583 HC_gene_1506 861 + 1181631 1184513 -chrIV 1184619 1186015 HC_gene_1507 64 + 1184619 1185960 -chrIV 1186077 1189625 HC_gene_1508 16 + 1186077 1189547 -chrIV 1190010 1191929 HC_gene_1509 39 + 1190010 1191929 -chrIV 1192730 1194097 MC_gene_1510 1 + 1192730 1194097 -chrIV 1195429 1196546 LC_gene_1511 1 + 1195429 1196546 -chrIV 1196532 1197827 MC_gene_1512 1 + 1196532 1197827 -chrIV 1199006 1201404 HC_gene_1513 3 + 1199006 1201378 -chrIV 1201924 1202656 HC_gene_1514 2 + 1201924 1202656 -chrIV 1202104 1202849 HC_gene_1515 455 + 1202104 1202839 -chrIV 1203055 1204517 MC_gene_1516 1 + 1203055 1204517 -chrIV 1206654 1207051 MC_gene_1517 1 + 1206654 1207051 -chrIV 1209314 1212713 HC_gene_1518 7 + 1209314 1212623 -chrIV 1212790 1213789 HC_gene_1519 99 + 1212790 1213789 -chrIV 1213851 1215028 HC_gene_1520 143 + 1213851 1214997 -chrIV 1219355 1219946 HC_gene_1521 1 + 1219355 1219551 -chrIV 1222712 1223662 HC_gene_1522 233 + 1222712 1223445 -chrIV 1224755 1225402 HC_gene_1523 104 + 1224755 1225310 -chrIV 1226672 1228375 HC_gene_1524 23 + 1226672 1228372 -chrIV 1228539 1229516 HC_gene_1525 581 + 1228539 1229321 -chrIV 1230126 1233317 HC_gene_1526 9 + 1230126 1233310 -chrIV 1234108 1236411 HC_gene_1527 162 + 1234108 1236270 -chrIV 1236473 1238595 HC_gene_1528 676 + 1236473 1238351 -chrIV 1238615 1239095 HC_gene_1529 5 + 1238615 1239091 -chrIV 1239409 1240070 HC_gene_1530 3766 + 1239409 1239991 -chrIV 1240090 1241174 MC_gene_1531 1 + 1240090 1241174 -chrIV 1241770 1243169 HC_gene_1532 2 + 1241770 1243169 -chrIV 1243201 1246037 HC_gene_1533 675 + 1243201 1245964 -chrIV 1246071 1248094 HC_gene_1534 4 + 1246071 1248094 -chrIV 1250133 1251924 HC_gene_1535 167 + 1250133 1251757 -chrIV 1252013 1255032 HC_gene_1536 10 + 1252013 1254977 -chrIV 1258214 1261441 HC_gene_1537 83 + 1258214 1261386 -chrIV 1261626 1263146 HC_gene_1538 231 + 1261626 1263063 -chrIV 1263188 1266503 HC_gene_1539 62 + 1263188 1266335 -chrIV 1267093 1267429 HC_gene_1540 22 + 1267093 1267429 -chrIV 1267394 1269679 HC_gene_1541 1 + 1267394 1269567 -chrIV 1269861 1270964 HC_gene_1542 637 + 1269861 1270954 -chrIV 1271041 1272257 HC_gene_1543 48 + 1271041 1272257 -chrIV 1274181 1274790 MC_gene_1544 1 + 1274181 1274790 -chrIV 1275379 1276418 HC_gene_1545 20 + 1275379 1276418 -chrIV 1276611 1277207 MC_gene_1546 1 + 1276611 1277207 -chrIV 1277591 1279199 MC_gene_1547 3 + 1277591 1279199 -chrIV 1279078 1283917 HC_gene_1548 13 + 1279078 1283914 -chrIV 1288264 1289109 HC_gene_1549 4 + 1288264 1289029 -chrIV 1289365 1291161 HC_gene_1550 3 + 1289365 1291083 -chrIV 1292140 1292464 HC_gene_1551 1 + 1292140 1292357 -chrIV 1292504 1293199 MC_gene_1552 1 + 1292504 1293199 -chrIV 1293388 1294423 LC_gene_1553 1 + 1293388 1294423 -chrIV 1294666 1295651 HC_gene_1554 188 + 1294666 1295636 -chrIV 1295782 1296808 HC_gene_1555 10 + 1295782 1296792 -chrIV 1297206 1298042 LC_gene_1556 1 + 1297206 1298042 -chrIV 1298367 1301157 HC_gene_1557 16 + 1298367 1301046 -chrIV 1301334 1302220 HC_gene_1558 4 + 1301334 1302220 -chrIV 1301588 1302714 HC_gene_1559 1985 + 1301588 1302714 -chrIV 1303123 1305461 HC_gene_1560 9 + 1303123 1305461 -chrIV 1305984 1307301 MC_gene_1561 1 + 1305984 1306248 -chrIV 1308675 1311928 HC_gene_1562 27 + 1308675 1311878 -chrIV 1311948 1314947 HC_gene_1563 4 + 1311948 1314936 -chrIV 1318125 1319264 LC_gene_1564 1 + 1318125 1319264 -chrIV 1319441 1319902 MC_gene_1565 1 + 1319441 1319874 -chrIV 1320016 1322041 HC_gene_1566 5 + 1320016 1322041 -chrIV 1322171 1323715 HC_gene_1567 133 + 1322171 1323485 -chrIV 1328761 1331089 HC_gene_1568 657 + 1328761 1330967 -chrIV 1331139 1333060 HC_gene_1569 30 + 1331139 1332952 -chrIV 1334574 1337116 HC_gene_1570 4 + 1334574 1337114 -chrIV 1337284 1339487 HC_gene_1571 11 + 1337284 1339487 -chrIV 1339434 1340996 HC_gene_1572 16 + 1339434 1340828 -chrIV 1342429 1344559 MC_gene_1573 2 + 1342429 1344559 -chrIV 1350203 1352477 HC_gene_1574 19 + 1350203 1352401 -chrIV 1353722 1354829 LC_gene_1575 1 + 1353722 1354829 -chrIV 1356027 1357855 HC_gene_1576 25 + 1356027 1357634 -chrIV 1359190 1359580 LC_gene_1577 1 + 1359190 1359499 -chrIV 1359894 1361056 HC_gene_1578 2664 + 1359894 1361056 -chrIV 1361039 1362338 HC_gene_1579 2 + 1361039 1362338 -chrIV 1362726 1365314 HC_gene_1580 123 + 1362726 1365301 -chrIV 1365617 1366270 LC_gene_1581 1 + 1365617 1366270 -chrIV 1367440 1369595 HC_gene_1582 57 + 1367440 1369493 -chrIV 1369674 1373066 HC_gene_1583 1 + 1369674 1373066 -chrIV 1371811 1379689 HC_gene_1584 14 + 1371811 1379689 -chrIV 1379047 1379763 HC_gene_1585 26 + 1379047 1379763 -chrIV 1382222 1383017 MC_gene_1586 1 + 1382222 1383017 -chrIV 1383681 1384962 HC_gene_1587 40 + 1383681 1384870 -chrIV 1385151 1385954 HC_gene_1588 3 + 1385151 1385433 -chrIV 1386017 1386661 HC_gene_1589 84 + 1386017 1386640 -chrIV 1386769 1388717 HC_gene_1590 40 + 1386769 1388580 -chrIV 1388769 1393540 HC_gene_1591 13 + 1388769 1393357 -chrIV 1395005 1398240 HC_gene_1592 7 + 1395005 1398240 -chrIV 1399025 1399971 HC_gene_1593 67 + 1399025 1399969 -chrIV 1401609 1402897 HC_gene_1594 2596 + 1401609 1402684 -chrIV 1402918 1403219 HC_gene_1595 34 + 1402918 1403219 -chrIV 1403264 1404558 HC_gene_1596 91 + 1403264 1404534 -chrIV 1406080 1408848 HC_gene_1597 7 + 1406080 1408848 -chrIV 1410557 1411272 MC_gene_1598 1 + 1410557 1411272 -chrIV 1410619 1412000 MC_gene_1599 1 + 1410619 1411978 -chrIV 1412104 1414514 HC_gene_1600 52 + 1412104 1414423 -chrIV 1414536 1416495 HC_gene_1601 20 + 1414536 1416489 -chrIV 1417095 1418656 HC_gene_1602 14 + 1417095 1418561 -chrIV 1419121 1420361 LC_gene_1603 1 + 1419121 1420361 -chrIV 1420651 1421063 LC_gene_1604 1 + 1420651 1421063 -chrIV 1421129 1422695 HC_gene_1605 295 + 1421129 1422695 -chrIV 1422732 1424811 HC_gene_1606 12 + 1422732 1424774 -chrIV 1427386 1428506 MC_gene_1607 1 + 1427386 1428353 -chrIV 1431001 1432317 HC_gene_1608 17 + 1431001 1432310 -chrIV 1432616 1434750 LC_gene_1609 1 + 1432616 1434750 -chrIV 1434768 1436062 HC_gene_1610 236 + 1434768 1435967 -chrIV 1436114 1436844 HC_gene_1611 91 + 1436114 1436708 -chrIV 1436895 1438119 HC_gene_1612 74 + 1436895 1438089 -chrIV 1445762 1446169 MC_gene_1613 1 + 1445762 1446166 -chrIV 1447835 1450237 MC_gene_1614 1 + 1447835 1450222 -chrIV 1451336 1453125 HC_gene_1615 16 + 1451336 1453125 -chrIV 1454621 1455181 LC_gene_1616 1 + 1454621 1454930 -chrIV 1456074 1456721 HC_gene_1617 19 + 1456074 1456718 -chrIV 1457520 1459374 LC_gene_1618 1 + 1457520 1459374 -chrIV 1459769 1460862 LC_gene_1619 1 + 1459769 1460841 -chrIV 1465543 1466336 MC_gene_1620 1 + 1465543 1466336 -chrIV 1469353 1469931 HC_gene_1621 759 + 1469353 1469854 -chrIV 1469990 1470621 HC_gene_1622 62 + 1469990 1470512 -chrIV 1470993 1471702 HC_gene_1623 507 + 1470993 1471550 -chrIV 1473200 1474854 HC_gene_1624 31 + 1473200 1474852 -chrIV 1474979 1476589 LC_gene_1625 1 + 1474979 1476589 -chrIV 1476866 1478534 HC_gene_1626 116 + 1476866 1478485 -chrIV 1478571 1480231 HC_gene_1627 61 + 1478571 1480212 -chrIV 1480415 1481334 HC_gene_1628 233 + 1480415 1481334 -chrIV 1483730 1485585 HC_gene_1629 2 + 1483730 1485585 -chrIV 1486257 1487117 LC_gene_1630 1 + 1486257 1487117 -chrIV 1487602 1489206 LC_gene_1631 1 + 1487602 1489206 -chrIV 1490555 1493214 HC_gene_1632 302 + 1490555 1493214 -chrIV 1494266 1496177 HC_gene_1633 19 + 1494266 1495997 -chrIV 1498180 1499521 HC_gene_1634 91 + 1498180 1499496 -chrIV 1500709 1501279 HC_gene_1635 9 + 1500709 1501144 -chrIV 1507062 1507979 LC_gene_1636 1 + 1507062 1507979 -chrIV 1508234 1509863 MC_gene_1637 1 + 1508234 1509863 -chrIV 1510007 1511868 HC_gene_1638 5 + 1510007 1511868 -chrIV 1510834 1511962 HC_gene_1639 46 + 1510834 1511922 -chrIV 1512060 1513968 HC_gene_1640 38 + 1512060 1513968 -chrIV 1514296 1515137 HC_gene_1641 2 + 1514296 1515069 -chrIV 1516592 1517711 MC_gene_1642 1 + 1516592 1517711 -chrIV 1517137 1517774 MC_gene_1643 1 + 1517137 1517774 -chrIV 1518282 1518841 HC_gene_1644 11 + 1518282 1518786 -chrIV 1519244 1520879 LC_gene_1645 1 + 1519244 1520879 -chrIV 1521136 1522421 HC_gene_1646 13 + 1521136 1522421 -chrIV 1522657 1523758 LC_gene_1647 1 + 1522657 1523758 -chrIV 3447 5627 MC_gene_1648 1 - 3447 5627 -chrIV 8570 10055 LC_gene_1649 1 - 8570 10055 -chrIV 14308 15732 LC_gene_1650 1 - 14308 15732 -chrIV 17465 19904 HC_gene_1651 8 - 17465 19904 -chrIV 20293 21032 LC_gene_1652 1 - 20293 21032 -chrIV 21186 21888 MC_gene_1653 1 - 21186 21888 -chrIV 26356 29879 MC_gene_1654 1 - 26356 29879 -chrIV 28829 30476 MC_gene_1655 1 - 28829 30476 -chrIV 31801 33211 MC_gene_1656 1 - 31801 33211 -chrIV 33211 34041 HC_gene_1657 176 - 33266 34041 -chrIV 34123 36561 HC_gene_1658 22 - 34143 36561 -chrIV 38263 38626 MC_gene_1659 1 - 38263 38626 -chrIV 38705 42356 HC_gene_1660 9 - 38776 42356 -chrIV 46106 48071 MC_gene_1661 3 - 46196 48071 -chrIV 48030 50106 MC_gene_1662 1 - 48030 50106 -chrIV 50733 52201 HC_gene_1663 218 - 50904 52201 -chrIV 54151 56711 HC_gene_1664 13 - 54151 56711 -chrIV 56928 60725 MC_gene_1665 7 - 56936 60725 -chrIV 60481 60917 MC_gene_1666 1 - 60481 60917 -chrIV 60494 61257 MC_gene_1667 2 - 60494 61257 -chrIV 60561 61893 MC_gene_1668 1 - 60561 61893 -chrIV 61788 65039 MC_gene_1669 3 - 61788 65039 -chrIV 65461 65958 MC_gene_1670 1 - 65465 65958 -chrIV 65964 68771 HC_gene_1671 55 - 65964 68771 -chrIV 68799 70329 HC_gene_1672 7 - 68863 70329 -chrIV 70401 74035 HC_gene_1673 23 - 70485 74035 -chrIV 74327 74817 LC_gene_1674 1 - 74327 74817 -chrIV 76636 76903 MC_gene_1675 1 - 76636 76903 -chrIV 77003 77986 HC_gene_1676 296 - 77148 77986 -chrIV 77194 78251 HC_gene_1677 14 - 77194 78251 -chrIV 79065 80492 HC_gene_1678 6 - 79136 80492 -chrIV 84092 85943 MC_gene_1679 2 - 84092 85943 -chrIV 85933 87249 MC_gene_1680 1 - 85933 87249 -chrIV 92310 93952 HC_gene_1681 80 - 92464 93952 -chrIV 95757 98131 HC_gene_1682 19 - 95771 98131 -chrIV 98806 101072 HC_gene_1683 80 - 99221 101072 -chrIV 101164 103423 HC_gene_1684 4 - 101164 103423 -chrIV 103388 104669 HC_gene_1685 377 - 103388 104669 -chrIV 104804 106831 HC_gene_1686 8 - 104821 106831 -chrIV 115189 116100 HC_gene_1687 1 - 115775 116100 -chrIV 116916 117948 MC_gene_1688 1 - 116996 117948 -chrIV 118483 121788 HC_gene_1689 51 - 118483 121788 -chrIV 123627 125155 HC_gene_1690 53 - 123707 125155 -chrIV 125384 126466 HC_gene_1691 11 - 125509 126466 -chrIV 129675 130008 LC_gene_1692 1 - 129675 130008 -chrIV 130008 130507 HC_gene_1693 17830 - 130187 130507 -chrIV 130658 132712 HC_gene_1694 23 - 130704 132712 -chrIV 134395 135533 MC_gene_1695 1 - 134720 135533 -chrIV 137599 137883 HC_gene_1696 10 - 137609 137883 -chrIV 138623 139369 MC_gene_1697 1 - 138682 139369 -chrIV 141117 141774 HC_gene_1698 44 - 141117 141774 -chrIV 144106 145546 HC_gene_1699 28 - 144168 145546 -chrIV 145655 147609 HC_gene_1700 46 - 145729 147609 -chrIV 149039 155897 HC_gene_1701 104 - 149080 155897 -chrIV 157991 158736 HC_gene_1702 17 - 157991 158736 -chrIV 160637 163201 HC_gene_1703 50 - 160812 163201 -chrIV 163298 164088 HC_gene_1704 184 - 163372 164088 -chrIV 164193 164816 LC_gene_1705 1 - 164193 164816 -chrIV 164816 167306 HC_gene_1706 8 - 164830 167306 -chrIV 168877 169619 HC_gene_1707 48 - 169047 169619 -chrIV 169657 172215 HC_gene_1708 86 - 169771 172215 -chrIV 173811 174606 HC_gene_1709 487 - 173945 174606 -chrIV 175692 176237 LC_gene_1710 1 - 175692 176237 -chrIV 180962 183040 HC_gene_1711 215 - 180966 183040 -chrIV 187700 188629 HC_gene_1712 38 - 187728 188629 -chrIV 187870 190617 HC_gene_1713 49 - 187870 190617 -chrIV 191898 192396 LC_gene_1714 1 - 191898 192396 -chrIV 192509 192697 MC_gene_1715 1 - 192509 192697 -chrIV 194241 198430 HC_gene_1716 187 - 194392 198430 -chrIV 198501 199768 HC_gene_1717 61 - 198501 199768 -chrIV 201488 202634 HC_gene_1718 55 - 201588 202634 -chrIV 205062 205714 HC_gene_1719 49 - 205129 205714 -chrIV 205249 206423 HC_gene_1720 13 - 205249 206423 -chrIV 205254 211105 HC_gene_1721 12 - 205254 211105 -chrIV 211226 212075 HC_gene_1722 28 - 211228 212075 -chrIV 212373 214388 MC_gene_1723 2 - 212373 214388 -chrIV 214393 215355 MC_gene_1724 1 - 214393 215355 -chrIV 215355 217196 MC_gene_1725 2 - 215649 217196 -chrIV 217086 218150 MC_gene_1726 1 - 217086 218150 -chrIV 218335 219334 HC_gene_1727 337 - 218356 219334 -chrIV 219417 221260 HC_gene_1728 117 - 219606 221260 -chrIV 221341 221820 HC_gene_1729 9401 - 221490 221820 -chrIV 226529 227096 MC_gene_1730 1 - 226725 227096 -chrIV 228686 228887 HC_gene_1731 2 - 228686 228887 -chrIV 229120 229461 MC_gene_1732 1 - 229120 229461 -chrIV 230553 232221 MC_gene_1733 1 - 230553 232221 -chrIV 232207 233775 MC_gene_1734 1 - 232207 233775 -chrIV 233775 234123 HC_gene_1735 1 - 233977 234123 -chrIV 234599 235801 LC_gene_1736 1 - 234617 235801 -chrIV 235847 238706 HC_gene_1737 949 - 235930 238706 -chrIV 238761 239752 HC_gene_1738 580 - 238900 239752 -chrIV 239392 239799 HC_gene_1739 7 - 239392 239799 -chrIV 240612 242068 HC_gene_1740 2 - 241122 242068 -chrIV 244855 245609 HC_gene_1741 270 - 244930 245609 -chrIV 245809 246154 LC_gene_1742 1 - 245809 246154 -chrIV 246450 247785 HC_gene_1743 44 - 246526 247785 -chrIV 248238 248872 LC_gene_1744 1 - 248238 248872 -chrIV 248928 251113 LC_gene_1745 1 - 248928 251113 -chrIV 253901 255333 HC_gene_1746 54 - 253901 255333 -chrIV 255559 256379 LC_gene_1747 1 - 255559 256379 -chrIV 256415 258618 HC_gene_1748 13 - 256511 258618 -chrIV 262987 264180 HC_gene_1749 146 - 263147 264180 -chrIV 264321 267544 HC_gene_1750 137 - 264321 267544 -chrIV 267673 267860 MC_gene_1751 1 - 267673 267860 -chrIV 268144 268789 LC_gene_1752 1 - 268144 268789 -chrIV 268905 269451 LC_gene_1753 1 - 268997 269451 -chrIV 269938 271966 HC_gene_1754 4 - 269971 271966 -chrIV 273269 274896 HC_gene_1755 4 - 273285 274896 -chrIV 274926 276645 HC_gene_1756 55 - 274926 276645 -chrIV 280162 281862 HC_gene_1757 10 - 280162 281862 -chrIV 281967 283213 HC_gene_1758 452 - 282043 283213 -chrIV 284413 285176 HC_gene_1759 39 - 284438 285176 -chrIV 285252 286728 HC_gene_1760 295 - 285292 286728 -chrIV 289757 290353 LC_gene_1761 1 - 289757 290353 -chrIV 292029 292476 LC_gene_1762 1 - 292029 292476 -chrIV 293180 294854 HC_gene_1763 17 - 293288 294854 -chrIV 294821 296512 HC_gene_1764 23 - 294821 296512 -chrIV 298048 301258 HC_gene_1765 46 - 298261 301258 -chrIV 301397 302137 LC_gene_1766 1 - 301397 302137 -chrIV 302137 302727 HC_gene_1767 202 - 302215 302727 -chrIV 303922 304854 MC_gene_1768 1 - 304009 304854 -chrIV 306106 306503 LC_gene_1769 1 - 306106 306503 -chrIV 306503 307808 HC_gene_1770 2129 - 306548 307808 -chrIV 309399 310189 HC_gene_1771 2945 - 309691 310189 -chrIV 310455 312656 HC_gene_1772 13 - 310469 312656 -chrIV 312826 314776 HC_gene_1773 9 - 312826 314776 -chrIV 315195 316445 HC_gene_1774 248 - 315271 316445 -chrIV 316904 320307 MC_gene_1775 2 - 316904 320307 -chrIV 320376 321488 HC_gene_1776 85 - 320406 321488 -chrIV 322715 323633 HC_gene_1777 77 - 322993 323633 -chrIV 323644 326222 HC_gene_1778 37 - 323644 326222 -chrIV 329659 330872 HC_gene_1779 385 - 329747 330872 -chrIV 332995 333944 HC_gene_1780 23 - 332995 333944 -chrIV 333975 334607 HC_gene_1781 444 - 333975 334607 -chrIV 335391 336035 LC_gene_1782 1 - 335391 336035 -chrIV 336035 337297 HC_gene_1783 112 - 336053 337297 -chrIV 337975 340236 HC_gene_1784 34 - 338025 340236 -chrIV 340256 341240 HC_gene_1785 3718 - 340458 341240 -chrIV 343924 345067 HC_gene_1786 18 - 343969 345067 -chrIV 345243 346258 LC_gene_1787 1 - 345261 346258 -chrIV 355133 356909 HC_gene_1788 3372 - 355425 356909 -chrIV 358589 358882 MC_gene_1789 1 - 358601 358882 -chrIV 359693 361363 HC_gene_1790 49 - 359745 361363 -chrIV 361443 362455 HC_gene_1791 191 - 361508 362455 -chrIV 362398 363603 HC_gene_1792 245 - 362398 363603 -chrIV 364821 365714 HC_gene_1793 16 - 364851 365714 -chrIV 365777 366172 HC_gene_1794 8 - 365816 366172 -chrIV 366617 368262 HC_gene_1795 164 - 366621 368262 -chrIV 371317 372003 HC_gene_1796 1 - 371583 372003 -chrIV 372549 373745 HC_gene_1797 44 - 372573 373745 -chrIV 373883 376527 HC_gene_1798 47 - 373889 376527 -chrIV 376604 378506 HC_gene_1799 17 - 376635 378506 -chrIV 378612 381466 HC_gene_1800 100 - 378748 381466 -chrIV 381746 385766 HC_gene_1801 18 - 381847 385766 -chrIV 387175 388886 HC_gene_1802 12 - 387175 388886 -chrIV 388966 392342 HC_gene_1803 13 - 389018 392342 -chrIV 392451 393952 HC_gene_1804 5 - 392456 393952 -chrIV 398471 399100 MC_gene_1805 1 - 398471 399100 -chrIV 400744 403402 HC_gene_1806 5 - 400845 403402 -chrIV 403488 405004 HC_gene_1807 64 - 403488 405004 -chrIV 405227 407403 HC_gene_1808 14 - 405231 407403 -chrIV 408106 409214 HC_gene_1809 2 - 408106 409214 -chrIV 408242 409869 HC_gene_1810 2 - 408242 409869 -chrIV 410478 411030 MC_gene_1811 1 - 410511 411030 -chrIV 410676 411590 MC_gene_1812 2 - 410676 411590 -chrIV 413213 413577 MC_gene_1813 1 - 413213 413577 -chrIV 413814 414790 MC_gene_1814 1 - 413814 414790 -chrIV 414810 416804 HC_gene_1815 207 - 414988 416804 -chrIV 417453 421728 HC_gene_1816 59 - 417464 421728 -chrIV 422559 423921 HC_gene_1817 51 - 422577 423921 -chrIV 425524 426988 HC_gene_1818 318 - 425744 426988 -chrIV 428475 428733 HC_gene_1819 4 - 428475 428733 -chrIV 430796 431535 HC_gene_1820 196 - 430819 431535 -chrIV 430920 432014 HC_gene_1821 16 - 430920 432014 -chrIV 432975 433323 MC_gene_1822 1 - 432994 433323 -chrIV 433428 434123 MC_gene_1823 1 - 433440 434123 -chrIV 434471 434885 LC_gene_1824 1 - 434471 434885 -chrIV 439328 439859 LC_gene_1825 1 - 439328 439859 -chrIV 440660 442350 HC_gene_1826 125 - 440795 442350 -chrIV 443468 444191 HC_gene_1827 8 - 443646 444191 -chrIV 445511 446114 MC_gene_1828 1 - 445511 446114 -chrIV 446521 447619 HC_gene_1829 85 - 446624 447619 -chrIV 448630 449084 LC_gene_1830 1 - 448630 449084 -chrIV 449308 449565 MC_gene_1831 1 - 449308 449565 -chrIV 450049 452683 HC_gene_1832 54 - 450103 452683 -chrIV 453975 454728 LC_gene_1833 1 - 453975 454728 -chrIV 454758 455645 MC_gene_1834 1 - 454994 455645 -chrIV 456487 458221 HC_gene_1835 31 - 456622 458221 -chrIV 458311 461344 HC_gene_1836 54 - 458452 461344 -chrIV 461279 462408 HC_gene_1837 9 - 461279 462408 -chrIV 462623 464972 HC_gene_1838 6 - 462623 464972 -chrIV 469871 470688 LC_gene_1839 1 - 469871 470688 -chrIV 470688 471530 HC_gene_1840 4 - 470790 471530 -chrIV 473764 474902 LC_gene_1841 1 - 473764 474902 -chrIV 476167 476828 LC_gene_1842 1 - 476167 476828 -chrIV 478096 478775 HC_gene_1843 217 - 478364 478775 -chrIV 478815 482268 HC_gene_1844 15 - 478943 482268 -chrIV 482504 483859 HC_gene_1845 1 - 482504 483859 -chrIV 483910 485383 HC_gene_1846 100 - 483984 485383 -chrIV 485327 486527 HC_gene_1847 35 - 485327 486527 -chrIV 487956 489210 HC_gene_1848 32 - 487965 489210 -chrIV 489376 490934 MC_gene_1849 1 - 489399 490934 -chrIV 492274 494419 HC_gene_1850 34 - 492342 494419 -chrIV 494560 497431 HC_gene_1851 21 - 494560 497431 -chrIV 497410 501524 HC_gene_1852 61 - 497410 501524 -chrIV 501606 503282 HC_gene_1853 9 - 501611 503282 -chrIV 503875 504755 HC_gene_1854 787 - 503944 504755 -chrIV 505140 505734 MC_gene_1855 1 - 505193 505734 -chrIV 506376 507166 HC_gene_1856 3 - 506376 507166 -chrIV 509312 512753 HC_gene_1857 27 - 509439 512753 -chrIV 513690 518730 MC_gene_1858 1 - 513690 518730 -chrIV 519389 520212 LC_gene_1859 1 - 519389 520212 -chrIV 520212 520616 MC_gene_1860 1 - 520212 520616 -chrIV 521136 521458 MC_gene_1861 1 - 521136 521458 -chrIV 523064 524767 HC_gene_1862 37 - 523080 524767 -chrIV 527279 533375 MC_gene_1863 1 - 527279 533375 -chrIV 535068 538615 MC_gene_1864 1 - 535068 538615 -chrIV 538680 539576 MC_gene_1865 1 - 538680 539576 -chrIV 540507 541414 HC_gene_1866 10 - 540507 541414 -chrIV 541135 542311 HC_gene_1867 9 - 541135 542311 -chrIV 542467 543567 HC_gene_1868 41 - 542547 543567 -chrIV 544739 545766 HC_gene_1869 12 - 544739 545766 -chrIV 547531 548466 HC_gene_1870 235 - 547677 548466 -chrIV 548568 550671 HC_gene_1871 126 - 548677 550671 -chrIV 553226 553793 LC_gene_1872 1 - 553226 553793 -chrIV 555223 556503 HC_gene_1873 7714 - 555636 556503 -chrIV 556872 558107 HC_gene_1874 118 - 556993 558107 -chrIV 558178 560780 HC_gene_1875 39 - 558267 560780 -chrIV 560857 562698 HC_gene_1876 114 - 560951 562698 -chrIV 563729 564168 MC_gene_1877 1 - 563729 564168 -chrIV 564653 565699 HC_gene_1878 307 - 564973 565699 -chrIV 565653 567368 LC_gene_1879 1 - 565653 567368 -chrIV 567545 568736 MC_gene_1880 2 - 567545 568736 -chrIV 569065 569790 HC_gene_1881 82 - 569128 569790 -chrIV 574990 575820 HC_gene_1882 2 - 574990 575820 -chrIV 576277 578087 LC_gene_1883 1 - 576277 578087 -chrIV 578325 579116 HC_gene_1884 1 - 578325 579116 -chrIV 581793 582640 HC_gene_1885 21 - 581793 582640 -chrIV 582660 583528 HC_gene_1886 67 - 582736 583528 -chrIV 584632 587783 HC_gene_1887 9 - 584632 587783 -chrIV 587943 588558 MC_gene_1888 2 - 587943 588558 -chrIV 588586 589470 HC_gene_1889 490 - 588714 589470 -chrIV 589682 591471 HC_gene_1890 316 - 589685 591471 -chrIV 592593 593047 HC_gene_1891 19 - 592594 593047 -chrIV 593106 593470 HC_gene_1892 46 - 593106 593470 -chrIV 595831 596775 LC_gene_1893 1 - 595831 596775 -chrIV 598401 599603 HC_gene_1894 4 - 598401 599603 -chrIV 600318 601018 MC_gene_1895 1 - 600318 601018 -chrIV 602021 602900 HC_gene_1896 33 - 602036 602900 -chrIV 602632 602994 HC_gene_1897 2 - 602632 602994 -chrIV 603028 603251 HC_gene_1898 1 - 603028 603251 -chrIV 603271 603839 HC_gene_1899 149 - 603377 603839 -chrIV 603919 604534 MC_gene_1900 1 - 603919 604534 -chrIV 607068 607669 HC_gene_1901 16 - 607068 607669 -chrIV 608107 610168 HC_gene_1902 2 - 608154 610168 -chrIV 611033 611580 LC_gene_1903 1 - 611033 611580 -chrIV 613106 614030 HC_gene_1904 106 - 613159 614030 -chrIV 614198 616260 HC_gene_1905 64 - 614198 616260 -chrIV 616486 617227 HC_gene_1906 1342 - 616730 617227 -chrIV 617312 618336 HC_gene_1907 171 - 617375 618336 -chrIV 618305 619847 HC_gene_1908 17 - 618305 619847 -chrIV 619847 620036 MC_gene_1909 1 - 619847 620036 -chrIV 620152 621698 HC_gene_1910 11 - 620152 621698 -chrIV 624615 626057 HC_gene_1911 37 - 624724 626057 -chrIV 626133 628592 HC_gene_1912 162 - 626372 628592 -chrIV 629323 630654 MC_gene_1913 1 - 629323 630654 -chrIV 630585 631301 MC_gene_1914 1 - 630585 631301 -chrIV 636484 636793 LC_gene_1915 1 - 636484 636793 -chrIV 640036 643931 HC_gene_1916 11 - 640060 643931 -chrIV 643935 644969 HC_gene_1917 241 - 643935 644969 -chrIV 645530 651167 LC_gene_1918 1 - 645530 651167 -chrIV 651944 652525 HC_gene_1919 10 - 652106 652525 -chrIV 652618 653399 HC_gene_1920 17 - 652618 653399 -chrIV 654544 654883 HC_gene_1921 52 - 654544 654883 -chrIV 655353 657495 HC_gene_1922 80 - 655562 657495 -chrIV 657652 658116 LC_gene_1923 1 - 657672 658116 -chrIV 661058 664960 HC_gene_1924 1 - 661069 664960 -chrIV 665121 666822 HC_gene_1925 31 - 665121 666822 -chrIV 667529 667868 LC_gene_1926 1 - 667576 667868 -chrIV 668591 671050 HC_gene_1927 5 - 668665 671050 -chrIV 673305 675884 MC_gene_1928 2 - 673345 675884 -chrIV 677753 680263 HC_gene_1929 28 - 677778 680263 -chrIV 680283 681713 HC_gene_1930 31 - 680417 681713 -chrIV 682060 682569 MC_gene_1931 1 - 682060 682569 -chrIV 682589 683617 HC_gene_1932 56 - 682598 683617 -chrIV 683732 685669 HC_gene_1933 35 - 683732 685669 -chrIV 687254 687858 MC_gene_1934 1 - 687502 687858 -chrIV 690250 690489 MC_gene_1935 1 - 690250 690489 -chrIV 691100 693235 HC_gene_1936 95 - 691271 693235 -chrIV 693532 694172 LC_gene_1937 1 - 693532 694172 -chrIV 697743 699509 HC_gene_1938 7 - 697895 699509 -chrIV 700158 702709 HC_gene_1939 10 - 700158 702709 -chrIV 703346 704124 HC_gene_1940 27 - 703383 704124 -chrIV 713022 715426 HC_gene_1941 287 - 713059 715426 -chrIV 715473 716651 HC_gene_1942 10 - 715493 716651 -chrIV 716690 718560 HC_gene_1943 2 - 716712 718560 -chrIV 718583 720425 HC_gene_1944 9 - 718596 720425 -chrIV 720466 721847 HC_gene_1945 1399 - 720790 721847 -chrIV 722831 727595 HC_gene_1946 45 - 722911 727595 -chrIV 729777 730256 LC_gene_1947 1 - 729777 730256 -chrIV 732975 733930 HC_gene_1948 209 - 732975 733930 -chrIV 734537 738602 HC_gene_1949 14 - 734698 738602 -chrIV 739532 740046 HC_gene_1950 3 - 739633 740046 -chrIV 740248 741831 HC_gene_1951 26 - 740344 741831 -chrIV 741851 744021 HC_gene_1952 19 - 741870 744021 -chrIV 743920 746241 HC_gene_1953 62 - 743920 746241 -chrIV 748339 748921 MC_gene_1954 1 - 748339 748921 -chrIV 748427 750914 MC_gene_1955 1 - 748427 750914 -chrIV 753373 755144 HC_gene_1956 164 - 753395 755144 -chrIV 763890 765247 HC_gene_1957 106 - 763902 765247 -chrIV 766330 768092 HC_gene_1958 73 - 766632 768092 -chrIV 768143 769038 HC_gene_1959 5319 - 768389 769038 -chrIV 769497 770254 MC_gene_1960 2 - 769740 770254 -chrIV 770253 771410 LC_gene_1961 1 - 770253 771410 -chrIV 778807 779005 LC_gene_1962 1 - 778807 779005 -chrIV 780175 781233 HC_gene_1963 78 - 780176 781233 -chrIV 781815 784258 HC_gene_1964 20 - 781864 784258 -chrIV 786154 789295 HC_gene_1965 5 - 786207 789295 -chrIV 791809 794256 HC_gene_1966 34 - 791824 794256 -chrIV 795858 802410 HC_gene_1967 72 - 795993 802410 -chrIV 803047 803890 MC_gene_1968 1 - 803072 803890 -chrIV 806486 807788 MC_gene_1969 1 - 806486 807788 -chrIV 807744 808011 MC_gene_1970 1 - 807744 808011 -chrIV 810380 811669 HC_gene_1971 19 - 810414 811669 -chrIV 811849 812162 LC_gene_1972 1 - 811849 812162 -chrIV 812923 814200 HC_gene_1973 89 - 812998 814200 -chrIV 816062 816778 LC_gene_1974 1 - 816062 816778 -chrIV 817388 817726 MC_gene_1975 1 - 817388 817726 -chrIV 818446 819192 HC_gene_1976 56 - 818580 819192 -chrIV 819643 820973 MC_gene_1977 1 - 819643 820973 -chrIV 825721 827368 HC_gene_1978 16 - 825721 827368 -chrIV 828899 829369 MC_gene_1979 1 - 828916 829369 -chrIV 829094 829637 MC_gene_1980 1 - 829094 829637 -chrIV 830046 831543 HC_gene_1981 85 - 830470 831543 -chrIV 831731 832576 HC_gene_1982 18 - 831731 832576 -chrIV 832620 835709 HC_gene_1983 38 - 832739 835709 -chrIV 840163 842020 HC_gene_1984 259 - 840318 842020 -chrIV 843414 844935 HC_gene_1985 22 - 843474 844935 -chrIV 845529 847970 HC_gene_1986 111 - 845799 847970 -chrIV 850064 851000 HC_gene_1987 97 - 850181 851000 -chrIV 852435 853987 HC_gene_1988 17 - 852494 853987 -chrIV 854126 856159 HC_gene_1989 22 - 854126 856159 -chrIV 856713 857985 HC_gene_1990 26 - 856763 857985 -chrIV 861108 861521 MC_gene_1991 1 - 861184 861521 -chrIV 864816 867612 HC_gene_1992 11 - 864816 867612 -chrIV 871603 872481 MC_gene_1993 1 - 871603 872481 -chrIV 878337 880272 MC_gene_1994 1 - 878337 880272 -chrIV 886432 886893 LC_gene_1995 1 - 886432 886893 -chrIV 886918 887900 MC_gene_1996 1 - 886918 887900 -chrIV 891860 892442 MC_gene_1997 2 - 892006 892442 -chrIV 892645 893367 MC_gene_1998 1 - 892652 893367 -chrIV 892732 893516 MC_gene_1999 1 - 892732 893516 -chrIV 899477 903538 HC_gene_2000 1 - 899477 903538 -chrIV 903657 904061 HC_gene_2001 6 - 903657 904061 -chrIV 905231 907088 HC_gene_2002 12 - 905251 907088 -chrIV 908194 908948 MC_gene_2003 1 - 908194 908948 -chrIV 908336 909376 MC_gene_2004 1 - 908336 909376 -chrIV 908497 909488 MC_gene_2005 1 - 908497 909488 -chrIV 909971 911379 HC_gene_2006 4 - 909971 911379 -chrIV 911396 911831 HC_gene_2007 3 - 911396 911831 -chrIV 912392 913750 HC_gene_2008 5 - 912395 913750 -chrIV 913778 914121 MC_gene_2009 1 - 913778 914121 -chrIV 914121 914747 HC_gene_2010 2755 - 914185 914747 -chrIV 914785 915583 MC_gene_2011 1 - 914785 915583 -chrIV 915583 916309 HC_gene_2012 16 - 915960 916309 -chrIV 921850 923958 HC_gene_2013 14 - 921857 923958 -chrIV 923978 924515 HC_gene_2014 42 - 924158 924515 -chrIV 925983 926936 HC_gene_2015 57 - 926047 926936 -chrIV 929194 930630 HC_gene_2016 1122 - 929321 930630 -chrIV 933224 933534 HC_gene_2017 1 - 933224 933534 -chrIV 933561 934896 MC_gene_2018 1 - 933561 934896 -chrIV 935055 936324 HC_gene_2019 73 - 935120 936324 -chrIV 937461 940846 HC_gene_2020 108 - 937544 940846 -chrIV 940978 943446 HC_gene_2021 7 - 940978 943446 -chrIV 943536 945173 HC_gene_2022 13 - 943554 945173 -chrIV 946870 948523 MC_gene_2023 1 - 946870 948523 -chrIV 948464 950313 HC_gene_2024 8 - 948464 950313 -chrIV 954035 954849 MC_gene_2025 2 - 954035 954849 -chrIV 954788 955527 MC_gene_2026 2 - 954788 955527 -chrIV 956604 957499 LC_gene_2027 1 - 956604 957499 -chrIV 957686 958398 HC_gene_2028 93 - 957686 958398 -chrIV 958414 960115 HC_gene_2029 20 - 958414 960115 -chrIV 959999 962185 LC_gene_2030 1 - 959999 962185 -chrIV 963335 963854 MC_gene_2031 1 - 963335 963854 -chrIV 963899 964725 HC_gene_2032 12 - 963899 964725 -chrIV 965385 967868 HC_gene_2033 11 - 965404 967868 -chrIV 967991 971483 HC_gene_2034 35 - 967991 971483 -chrIV 971586 974269 HC_gene_2035 69 - 971694 974269 -chrIV 974294 975995 HC_gene_2036 24 - 974294 975995 -chrIV 976173 977267 HC_gene_2037 68 - 976376 977267 -chrIV 977388 979241 HC_gene_2038 77 - 977393 979241 -chrIV 980107 980831 HC_gene_2039 32 - 980107 980831 -chrIV 981312 982729 LC_gene_2040 1 - 981312 982729 -chrIV 987179 990240 MC_gene_2041 1 - 987179 990240 -chrIV 994081 998392 HC_gene_2042 46 - 994081 998392 -chrIV 999735 1002240 HC_gene_2043 21 - 999962 1002240 -chrIV 1002181 1003749 HC_gene_2044 69 - 1002181 1003749 -chrIV 1004474 1005205 HC_gene_2045 4 - 1004505 1005205 -chrIV 1006449 1008540 LC_gene_2046 1 - 1006449 1008540 -chrIV 1010785 1011503 MC_gene_2047 1 - 1010785 1011503 -chrIV 1012837 1013685 HC_gene_2048 525 - 1012984 1013685 -chrIV 1014108 1015860 HC_gene_2049 133 - 1014119 1015860 -chrIV 1015881 1016712 LC_gene_2050 1 - 1015881 1016712 -chrIV 1018242 1019116 HC_gene_2051 1 - 1018264 1019116 -chrIV 1019325 1020096 LC_gene_2052 1 - 1019325 1020096 -chrIV 1020363 1021729 LC_gene_2053 1 - 1020363 1021729 -chrIV 1021781 1022436 HC_gene_2054 17 - 1021781 1022436 -chrIV 1023276 1024762 HC_gene_2055 13 - 1023276 1024762 -chrIV 1024897 1025825 HC_gene_2056 6 - 1024898 1025825 -chrIV 1026950 1029657 HC_gene_2057 1 - 1026952 1029657 -chrIV 1027233 1030170 HC_gene_2058 2 - 1027233 1030170 -chrIV 1029197 1030275 HC_gene_2059 2 - 1029197 1030275 -chrIV 1030239 1031701 HC_gene_2060 98 - 1030239 1031701 -chrIV 1031738 1032068 MC_gene_2061 1 - 1031738 1032068 -chrIV 1035084 1035791 HC_gene_2062 62 - 1035142 1035791 -chrIV 1038066 1039528 HC_gene_2063 59 - 1038071 1039528 -chrIV 1042579 1045144 HC_gene_2064 61 - 1042579 1045144 -chrIV 1045241 1047583 HC_gene_2065 43 - 1045389 1047583 -chrIV 1048860 1050221 HC_gene_2066 2 - 1049353 1050221 -chrIV 1050339 1052262 HC_gene_2067 71 - 1050403 1052262 -chrIV 1052396 1054910 HC_gene_2068 25 - 1052461 1054910 -chrIV 1054828 1055831 MC_gene_2069 1 - 1054828 1055831 -chrIV 1057918 1058933 HC_gene_2070 288 - 1057992 1058933 -chrIV 1061192 1062866 HC_gene_2071 39 - 1061199 1062866 -chrIV 1066950 1067468 LC_gene_2072 1 - 1066950 1067468 -chrIV 1068587 1071704 MC_gene_2073 3 - 1068587 1071704 -chrIV 1071729 1072574 HC_gene_2074 584 - 1071801 1072574 -chrIV 1072662 1073481 HC_gene_2075 49 - 1072665 1073481 -chrIV 1073394 1075227 HC_gene_2076 18 - 1073394 1075227 -chrIV 1075759 1077111 LC_gene_2077 1 - 1075771 1077111 -chrIV 1077449 1078489 HC_gene_2078 87 - 1077449 1078489 -chrIV 1078565 1080249 HC_gene_2079 134 - 1078587 1080249 -chrIV 1080869 1084595 HC_gene_2080 11 - 1080920 1084595 -chrIV 1088838 1092547 HC_gene_2081 26 - 1089017 1092547 -chrIV 1092661 1093588 HC_gene_2082 17 - 1092663 1093588 -chrIV 1095637 1096563 MC_gene_2083 1 - 1095651 1096563 -chrIV 1101130 1101858 LC_gene_2084 1 - 1101130 1101858 -chrIV 1102053 1103553 HC_gene_2085 2 - 1102053 1103553 -chrIV 1103946 1105875 HC_gene_2086 30 - 1103946 1105875 -chrIV 1105998 1106421 HC_gene_2087 8 - 1105998 1106421 -chrIV 1107670 1108522 HC_gene_2088 179 - 1108095 1108522 -chrIV 1110285 1110584 MC_gene_2089 1 - 1110285 1110584 -chrIV 1111651 1112335 HC_gene_2090 638 - 1111776 1112335 -chrIV 1112279 1114057 HC_gene_2091 18 - 1112279 1114057 -chrIV 1114102 1116717 HC_gene_2092 76 - 1114249 1116717 -chrIV 1120346 1125112 HC_gene_2093 4 - 1120463 1125112 -chrIV 1125185 1126086 HC_gene_2094 304 - 1125239 1126086 -chrIV 1126132 1127618 HC_gene_2095 41 - 1126187 1127618 -chrIV 1129516 1130819 LC_gene_2096 1 - 1129516 1130819 -chrIV 1130789 1131184 HC_gene_2097 3 - 1130789 1131184 -chrIV 1132985 1135466 HC_gene_2098 17 - 1133042 1135466 -chrIV 1137249 1139859 LC_gene_2099 1 - 1137249 1139859 -chrIV 1144826 1145619 LC_gene_2100 1 - 1144826 1145619 -chrIV 1147213 1149526 HC_gene_2101 9 - 1147213 1149526 -chrIV 1149589 1150561 HC_gene_2102 185 - 1149857 1150561 -chrIV 1151006 1151477 LC_gene_2103 1 - 1151009 1151477 -chrIV 1151477 1153648 HC_gene_2104 448 - 1151550 1153648 -chrIV 1153965 1156234 HC_gene_2105 280 - 1154052 1156234 -chrIV 1156784 1159251 MC_gene_2106 2 - 1156784 1159251 -chrIV 1159266 1161821 MC_gene_2107 3 - 1159266 1161821 -chrIV 1159459 1162632 MC_gene_2108 1 - 1159459 1162632 -chrIV 1162655 1164693 HC_gene_2109 3282 - 1162655 1164693 -chrIV 1164662 1165009 HC_gene_2110 1 - 1164662 1165009 -chrIV 1165848 1166298 MC_gene_2111 1 - 1165848 1166298 -chrIV 1166700 1168817 HC_gene_2112 460 - 1166920 1168817 -chrIV 1169979 1172019 HC_gene_2113 24 - 1170035 1172019 -chrIV 1172196 1174273 HC_gene_2114 34 - 1172266 1174273 -chrIV 1174377 1174752 MC_gene_2115 1 - 1174467 1174752 -chrIV 1174587 1175030 MC_gene_2116 1 - 1174587 1175030 -chrIV 1175214 1175645 LC_gene_2117 1 - 1175214 1175645 -chrIV 1175929 1178203 HC_gene_2118 11 - 1175997 1178203 -chrIV 1182439 1183490 HC_gene_2119 3 - 1182574 1183490 -chrIV 1189027 1189721 HC_gene_2120 187 - 1189126 1189721 -chrIV 1191719 1195200 HC_gene_2121 15 - 1191750 1195200 -chrIV 1195126 1196290 HC_gene_2122 175 - 1195126 1196290 -chrIV 1196433 1198808 HC_gene_2123 6 - 1196433 1198808 -chrIV 1201968 1206750 HC_gene_2124 359 - 1201968 1206750 -chrIV 1212420 1212900 MC_gene_2125 1 - 1212420 1212900 -chrIV 1214838 1217604 HC_gene_2126 8 - 1214908 1217604 -chrIV 1217655 1219125 HC_gene_2127 34 - 1217655 1219125 -chrIV 1220888 1222412 HC_gene_2128 170 - 1220967 1222412 -chrIV 1223392 1223739 HC_gene_2129 7 - 1223392 1223739 -chrIV 1224979 1226553 HC_gene_2130 24 - 1225105 1226553 -chrIV 1226608 1228295 LC_gene_2131 1 - 1226608 1228295 -chrIV 1228887 1229628 HC_gene_2132 385 - 1229138 1229628 -chrIV 1233137 1233754 HC_gene_2133 146 - 1233141 1233754 -chrIV 1234039 1236200 HC_gene_2134 5 - 1234039 1236200 -chrIV 1236816 1238046 LC_gene_2135 1 - 1236816 1238046 -chrIV 1238075 1239082 HC_gene_2136 76 - 1238098 1239082 -chrIV 1239347 1239847 MC_gene_2137 1 - 1239347 1239847 -chrIV 1239847 1240672 HC_gene_2138 52 - 1239883 1240672 -chrIV 1240975 1242537 HC_gene_2139 138 - 1241039 1242537 -chrIV 1248000 1249916 HC_gene_2140 15 - 1248011 1249916 -chrIV 1250889 1251634 LC_gene_2141 1 - 1250889 1251634 -chrIV 1254843 1256876 HC_gene_2142 34 - 1254886 1256876 -chrIV 1257264 1258483 HC_gene_2143 57 - 1257275 1258483 -chrIV 1259759 1260169 HC_gene_2144 8 - 1259759 1260169 -chrIV 1260507 1261374 HC_gene_2145 1 - 1260659 1261374 -chrIV 1265980 1266953 HC_gene_2146 239 - 1265980 1266953 -chrIV 1269758 1271616 MC_gene_2147 1 - 1269758 1271616 -chrIV 1272167 1273077 MC_gene_2148 1 - 1272167 1273077 -chrIV 1276181 1277362 HC_gene_2149 186 - 1276217 1277362 -chrIV 1277490 1278506 HC_gene_2150 1 - 1277490 1278506 -chrIV 1279017 1279943 HC_gene_2151 8 - 1279105 1279943 -chrIV 1283909 1288019 HC_gene_2152 3 - 1283996 1288019 -chrIV 1288042 1289135 HC_gene_2153 267 - 1288042 1289135 -chrIV 1290960 1292151 MC_gene_2154 2 - 1290960 1292151 -chrIV 1292171 1293140 HC_gene_2155 86 - 1292298 1293140 -chrIV 1293207 1294444 HC_gene_2156 36 - 1293303 1294444 -chrIV 1295294 1298206 HC_gene_2157 54 - 1295336 1298206 -chrIV 1300268 1301002 MC_gene_2158 1 - 1300268 1301002 -chrIV 1300952 1301270 MC_gene_2159 1 - 1300952 1301270 -chrIV 1302054 1302625 MC_gene_2160 1 - 1302065 1302625 -chrIV 1303042 1303692 LC_gene_2161 1 - 1303042 1303692 -chrIV 1311738 1312565 HC_gene_2162 4 - 1311738 1312565 -chrIV 1314992 1317830 HC_gene_2163 3 - 1315033 1317830 -chrIV 1317855 1319235 HC_gene_2164 26 - 1317855 1319235 -chrIV 1319319 1319866 HC_gene_2165 105 - 1319342 1319866 -chrIV 1321390 1321979 MC_gene_2166 1 - 1321426 1321979 -chrIV 1321917 1322262 MC_gene_2167 1 - 1321917 1322262 -chrIV 1323279 1325319 HC_gene_2168 766 - 1323346 1325319 -chrIV 1325396 1328528 HC_gene_2169 19 - 1325442 1328528 -chrIV 1332776 1333982 HC_gene_2170 59 - 1332818 1333982 -chrIV 1336233 1337124 HC_gene_2171 2 - 1336270 1337124 -chrIV 1338199 1339443 HC_gene_2172 3 - 1338199 1339443 -chrIV 1340544 1342214 HC_gene_2173 9 - 1340544 1342214 -chrIV 1344118 1349992 HC_gene_2174 151 - 1344207 1349992 -chrIV 1353062 1353565 HC_gene_2175 30 - 1353064 1353565 -chrIV 1354317 1355578 HC_gene_2176 2508 - 1354699 1355578 -chrIV 1357268 1358932 HC_gene_2177 9 - 1357392 1358932 -chrIV 1359042 1359414 MC_gene_2178 1 - 1359163 1359414 -chrIV 1359267 1359466 MC_gene_2179 1 - 1359267 1359466 -chrIV 1360698 1362244 HC_gene_2180 48 - 1360958 1362244 -chrIV 1362251 1364162 MC_gene_2181 1 - 1362251 1364162 -chrIV 1363450 1364450 MC_gene_2182 1 - 1363450 1364450 -chrIV 1364848 1365731 HC_gene_2183 81 - 1364851 1365731 -chrIV 1365892 1366844 HC_gene_2184 719 - 1366158 1366844 -chrIV 1379828 1382093 HC_gene_2185 26 - 1379878 1382093 -chrIV 1382131 1383540 HC_gene_2186 38 - 1382208 1383540 -chrIV 1385240 1385785 HC_gene_2187 52 - 1385418 1385785 -chrIV 1393104 1394598 HC_gene_2188 52 - 1393168 1394598 -chrIV 1396791 1398795 HC_gene_2189 134 - 1396791 1398795 -chrIV 1399501 1401301 HC_gene_2190 20 - 1399511 1401301 -chrIV 1402277 1403087 LC_gene_2191 1 - 1402572 1403087 -chrIV 1404194 1405923 HC_gene_2192 43 - 1404206 1405923 -chrIV 1407345 1410193 HC_gene_2193 16 - 1407350 1410193 -chrIV 1410248 1411146 HC_gene_2194 36 - 1410248 1411146 -chrIV 1415125 1417133 HC_gene_2195 19 - 1415125 1417133 -chrIV 1417217 1418318 MC_gene_2196 1 - 1417217 1418318 -chrIV 1418318 1420284 HC_gene_2197 84 - 1418340 1420284 -chrIV 1418439 1420929 HC_gene_2198 63 - 1418439 1420929 -chrIV 1424765 1426705 HC_gene_2199 3 - 1424771 1426705 -chrIV 1427297 1429173 HC_gene_2200 267 - 1427308 1429173 -chrIV 1431647 1434354 HC_gene_2201 9 - 1431663 1434354 -chrIV 1436046 1436666 LC_gene_2202 1 - 1436046 1436666 -chrIV 1437961 1441196 HC_gene_2203 7 - 1437961 1441196 -chrIV 1441209 1443428 HC_gene_2204 121 - 1441209 1443428 -chrIV 1443525 1445543 HC_gene_2205 243 - 1443601 1445543 -chrIV 1445697 1447030 HC_gene_2206 36 - 1445791 1447030 -chrIV 1449713 1450874 HC_gene_2207 3065 - 1450104 1450874 -chrIV 1451047 1452236 MC_gene_2208 1 - 1451047 1452236 -chrIV 1451190 1452451 MC_gene_2209 1 - 1451190 1452451 -chrIV 1452893 1454622 HC_gene_2210 160 - 1453014 1454622 -chrIV 1454832 1455897 HC_gene_2211 21 - 1454832 1455897 -chrIV 1456021 1461573 HC_gene_2212 45 - 1456082 1461573 -chrIV 1461578 1461806 LC_gene_2213 1 - 1461578 1461806 -chrIV 1462146 1465906 HC_gene_2214 19 - 1462180 1465906 -chrIV 1465966 1468489 HC_gene_2215 221 - 1466119 1468489 -chrIV 1469748 1470215 MC_gene_2216 1 - 1469784 1470215 -chrIV 1470250 1470795 HC_gene_2217 192 - 1470387 1470795 -chrIV 1471347 1473075 HC_gene_2218 23 - 1471454 1473075 -chrIV 1474842 1476976 HC_gene_2219 315 - 1474854 1476976 -chrIV 1477939 1480257 MC_gene_2220 1 - 1478224 1480257 -chrIV 1480919 1483490 HC_gene_2221 9 - 1480994 1483490 -chrIV 1485512 1489058 HC_gene_2222 25 - 1485512 1489058 -chrIV 1489106 1489844 HC_gene_2223 18413 - 1489259 1489844 -chrIV 1492049 1493076 HC_gene_2224 46 - 1492299 1493076 -chrIV 1493578 1493988 HC_gene_2225 4 - 1493586 1493988 -chrIV 1495723 1496580 HC_gene_2226 766 - 1495934 1496580 -chrIV 1496636 1497763 HC_gene_2227 58 - 1496671 1497763 -chrIV 1498163 1499168 LC_gene_2228 1 - 1498163 1499168 -chrIV 1499270 1500794 HC_gene_2229 16 - 1499332 1500794 -chrIV 1501148 1502197 HC_gene_2230 92 - 1501194 1502197 -chrIV 1503074 1504926 MC_gene_2231 1 - 1503074 1504926 -chrIV 1504951 1506855 HC_gene_2232 2 - 1504951 1506855 -chrIV 1506933 1507349 LC_gene_2233 1 - 1506933 1507349 -chrIV 1507789 1509794 MC_gene_2234 2 - 1507789 1509794 -chrIV 1513774 1515221 MC_gene_2235 2 - 1513774 1515221 -chrIV 1515678 1516446 HC_gene_2236 2 - 1515733 1516446 -chrIV 1516735 1517759 HC_gene_2237 7 - 1516742 1517759 -chrIV 1516831 1518010 HC_gene_2238 3 - 1516831 1518010 -chrIV 1519463 1520935 HC_gene_2239 31 - 1519463 1520935 -chrIV 1521283 1522354 LC_gene_2240 1 - 1521283 1522354 -chrV 4033 6451 MC_gene_2241 1 + 4033 6451 -chrV 7831 8122 HC_gene_2242 12 + 7831 8122 -chrV 9959 10639 MC_gene_2243 1 + 9959 10639 -chrV 11348 11988 MC_gene_2244 2 + 11348 11988 -chrV 13638 14841 HC_gene_2245 22 + 13638 14757 -chrV 16166 18250 HC_gene_2246 506 + 16166 17984 -chrV 19515 21225 MC_gene_2247 1 + 19515 21225 -chrV 21534 25479 MC_gene_2248 1 + 21534 25479 -chrV 26126 27593 HC_gene_2249 65 + 26126 27526 -chrV 27636 29622 HC_gene_2250 27 + 27636 29622 -chrV 34232 36568 HC_gene_2251 9 + 34232 36568 -chrV 39868 40561 MC_gene_2252 1 + 39868 40472 -chrV 41035 42175 MC_gene_2253 1 + 41035 42175 -chrV 42449 45059 HC_gene_2254 153 + 42449 45001 -chrV 45178 45817 HC_gene_2255 1 + 45178 45817 -chrV 47122 49882 HC_gene_2256 42 + 47122 49882 -chrV 51842 52126 MC_gene_2257 1 + 51842 52126 -chrV 52652 53432 LC_gene_2258 1 + 52652 53432 -chrV 53725 54017 MC_gene_2259 1 + 53725 53930 -chrV 56345 58285 HC_gene_2260 94 + 56345 58171 -chrV 58326 59341 HC_gene_2261 676 + 58326 59309 -chrV 61188 61912 HC_gene_2262 15 + 61188 61686 -chrV 63380 64223 LC_gene_2263 1 + 63380 64223 -chrV 64871 65324 LC_gene_2264 1 + 64871 65324 -chrV 66587 67123 MC_gene_2265 1 + 66587 67123 -chrV 67356 68931 LC_gene_2266 1 + 67356 68931 -chrV 69048 70397 HC_gene_2267 181 + 69048 70309 -chrV 70428 73462 HC_gene_2268 32 + 70428 73462 -chrV 73626 75931 HC_gene_2269 149 + 73626 75931 -chrV 75835 78077 HC_gene_2270 2 + 75835 78077 -chrV 78035 79923 HC_gene_2271 338 + 78035 79629 -chrV 80441 81322 HC_gene_2272 201 + 80441 81322 -chrV 84916 85550 LC_gene_2273 1 + 84916 85250 -chrV 85621 86648 HC_gene_2274 3119 + 85621 86368 -chrV 86884 90110 HC_gene_2275 45 + 86884 90037 -chrV 90220 94162 HC_gene_2276 107 + 90220 93991 -chrV 96093 96958 HC_gene_2277 8 + 96093 96949 -chrV 98072 99665 HC_gene_2278 10 + 98072 99665 -chrV 99684 100365 HC_gene_2279 1 + 99684 100365 -chrV 100705 101731 HC_gene_2280 2795 + 100705 101510 -chrV 101851 102729 HC_gene_2281 1425 + 101851 102395 -chrV 107175 108521 HC_gene_2282 150 + 107175 108508 -chrV 110806 111171 LC_gene_2283 1 + 110806 111171 -chrV 111352 115958 HC_gene_2284 36 + 111352 115958 -chrV 116281 117053 MC_gene_2285 1 + 116281 117053 -chrV 117145 117701 HC_gene_2286 419 + 117145 117591 -chrV 118164 118723 HC_gene_2287 2 + 118164 118723 -chrV 121465 122543 HC_gene_2288 60 + 121465 122402 -chrV 123182 124794 HC_gene_2289 64 + 123182 124761 -chrV 124794 126483 MC_gene_2290 1 + 124794 126483 -chrV 126588 128753 HC_gene_2291 76 + 126588 128753 -chrV 128586 131138 HC_gene_2292 32 + 128586 131011 -chrV 131675 132815 HC_gene_2293 102 + 131675 132662 -chrV 133087 135382 HC_gene_2294 42 + 133087 135349 -chrV 137153 138513 HC_gene_2295 2 + 137153 138513 -chrV 138878 140050 LC_gene_2296 1 + 138878 140050 -chrV 141498 142962 HC_gene_2297 6 + 141498 142501 -chrV 143023 144139 HC_gene_2298 26 + 143023 144060 -chrV 144302 145832 HC_gene_2299 56 + 144302 145798 -chrV 146907 148838 HC_gene_2300 351 + 146907 148669 -chrV 151196 151510 HC_gene_2301 2 + 151196 151422 -chrV 151541 151976 MC_gene_2302 1 + 151541 151976 -chrV 152837 153520 HC_gene_2303 1 + 152837 153520 -chrV 153477 156242 HC_gene_2304 40 + 153477 156111 -chrV 156737 157747 HC_gene_2305 87 + 156737 157747 -chrV 157657 159203 LC_gene_2306 1 + 157657 159203 -chrV 159331 160616 HC_gene_2307 157 + 159331 160616 -chrV 160507 162620 HC_gene_2308 20 + 160507 162581 -chrV 162682 164524 HC_gene_2309 230 + 162682 164524 -chrV 164503 166297 HC_gene_2310 6 + 164503 166230 -chrV 166489 166973 MC_gene_2311 1 + 166489 166973 -chrV 167036 168354 HC_gene_2312 18 + 167036 168028 -chrV 172079 173048 HC_gene_2313 1045 + 172079 172743 -chrV 173497 173721 HC_gene_2314 16 + 173497 173721 -chrV 175192 176168 HC_gene_2315 311 + 175192 176168 -chrV 177772 178757 HC_gene_2316 520 + 177772 178597 -chrV 178799 182395 HC_gene_2317 5 + 178799 182395 -chrV 182567 184332 HC_gene_2318 24 + 182567 184332 -chrV 184517 187035 HC_gene_2319 10 + 184517 187033 -chrV 188263 189573 HC_gene_2320 52 + 188263 189461 -chrV 192400 192793 HC_gene_2321 42 + 192400 192691 -chrV 192844 194549 HC_gene_2322 63 + 192844 194323 -chrV 195156 196857 HC_gene_2323 49 + 195156 196693 -chrV 196935 198648 HC_gene_2324 125 + 196935 198646 -chrV 198775 200984 HC_gene_2325 10 + 198775 200978 -chrV 201049 202151 HC_gene_2326 136 + 201049 202151 -chrV 202158 207288 HC_gene_2327 284 + 202158 207129 -chrV 207362 207618 MC_gene_2328 1 + 207362 207618 -chrV 210478 212466 MC_gene_2329 1 + 210478 212466 -chrV 212398 213295 MC_gene_2330 1 + 212398 213295 -chrV 213427 214445 HC_gene_2331 564 + 213427 214445 -chrV 215013 218037 HC_gene_2332 5 + 215013 217957 -chrV 221805 223557 HC_gene_2333 187 + 221805 223390 -chrV 225865 227204 HC_gene_2334 35 + 225865 227204 -chrV 228377 229376 HC_gene_2335 1 + 228377 229376 -chrV 228631 229639 HC_gene_2336 1 + 228631 229577 -chrV 229711 232249 HC_gene_2337 8 + 229711 232249 -chrV 232378 234904 HC_gene_2338 10 + 232378 234904 -chrV 234905 235701 HC_gene_2339 154 + 234905 235655 -chrV 237478 238108 LC_gene_2340 1 + 237478 238108 -chrV 238647 239459 LC_gene_2341 1 + 238647 239459 -chrV 239601 241698 MC_gene_2342 1 + 239601 241698 -chrV 242490 243707 HC_gene_2343 33 + 242490 243707 -chrV 247145 247590 LC_gene_2344 1 + 247145 247590 -chrV 248511 249556 MC_gene_2345 1 + 248511 249556 -chrV 250001 250477 MC_gene_2346 1 + 250001 250414 -chrV 250632 251666 HC_gene_2347 156 + 250632 251666 -chrV 251708 253926 HC_gene_2348 159 + 251708 253926 -chrV 255394 256185 HC_gene_2349 1 + 255394 256153 -chrV 259466 260669 MC_gene_2350 1 + 259466 260669 -chrV 261715 261977 MC_gene_2351 1 + 261715 261977 -chrV 261950 262674 MC_gene_2352 1 + 261950 262667 -chrV 263521 266144 HC_gene_2353 2 + 263521 266144 -chrV 268977 269716 HC_gene_2354 134 + 268977 269425 -chrV 270691 271646 HC_gene_2355 11 + 270691 271616 -chrV 271734 272226 HC_gene_2356 112 + 271734 272224 -chrV 272461 274468 HC_gene_2357 24 + 272461 274468 -chrV 274426 278312 HC_gene_2358 19 + 274426 278312 -chrV 279848 280916 MC_gene_2359 1 + 279848 280916 -chrV 281271 282832 HC_gene_2360 262 + 281271 282571 -chrV 284477 285190 HC_gene_2361 4 + 284477 285190 -chrV 285053 287550 HC_gene_2362 5 + 285053 287442 -chrV 289340 291003 MC_gene_2363 3 + 289340 290994 -chrV 291774 292643 HC_gene_2364 355 + 291774 292643 -chrV 292966 294954 HC_gene_2365 29 + 292966 294939 -chrV 295359 298281 HC_gene_2366 85 + 295359 298151 -chrV 298727 302204 HC_gene_2367 60 + 298727 302162 -chrV 302788 303461 HC_gene_2368 388 + 302788 303346 -chrV 303481 306245 HC_gene_2369 86 + 303481 305962 -chrV 306303 307426 HC_gene_2370 4306 + 306303 307316 -chrV 307446 308194 HC_gene_2371 2 + 307446 308194 -chrV 307622 308444 HC_gene_2372 207 + 307622 308382 -chrV 309754 311904 MC_gene_2373 1 + 309754 311904 -chrV 313562 314010 HC_gene_2374 3 + 313562 313931 -chrV 314038 314460 MC_gene_2375 1 + 314038 314259 -chrV 315902 316820 MC_gene_2376 1 + 315902 316820 -chrV 316770 317251 MC_gene_2377 1 + 316770 316889 -chrV 318841 319826 HC_gene_2378 73 + 318841 319816 -chrV 319942 322177 HC_gene_2379 72 + 319942 322177 -chrV 322211 324356 HC_gene_2380 207 + 322211 324356 -chrV 324286 325461 LC_gene_2381 1 + 324286 325461 -chrV 326200 327104 LC_gene_2382 1 + 326200 327104 -chrV 327242 327667 HC_gene_2383 27 + 327242 327667 -chrV 328436 330449 HC_gene_2384 181 + 328436 330362 -chrV 330536 332498 HC_gene_2385 12 + 330536 332471 -chrV 332842 333129 HC_gene_2386 1 + 332842 333120 -chrV 336012 336423 HC_gene_2387 1 + 336012 336198 -chrV 336423 337668 MC_gene_2388 1 + 336423 337668 -chrV 337894 339744 HC_gene_2389 195 + 337894 339730 -chrV 342815 343492 HC_gene_2390 196 + 342815 343492 -chrV 343496 343870 MC_gene_2391 1 + 343496 343731 -chrV 344017 344846 LC_gene_2392 1 + 344017 344846 -chrV 347822 348481 MC_gene_2393 1 + 347822 348481 -chrV 348049 348681 MC_gene_2394 1 + 348049 348681 -chrV 349934 351554 HC_gene_2395 72 + 349934 351501 -chrV 351597 353420 HC_gene_2396 4 + 351597 353420 -chrV 353737 354484 MC_gene_2397 1 + 353737 354484 -chrV 355285 358155 HC_gene_2398 3 + 355285 358155 -chrV 358735 359024 LC_gene_2399 1 + 358735 359024 -chrV 359279 360596 HC_gene_2400 200 + 359279 360408 -chrV 361362 362284 MC_gene_2401 1 + 361362 362284 -chrV 362712 363867 HC_gene_2402 48 + 362712 363867 -chrV 363081 364007 HC_gene_2403 2838 + 363081 364007 -chrV 364090 366683 HC_gene_2404 46 + 364090 366680 -chrV 366782 368480 HC_gene_2405 7 + 366782 368480 -chrV 372113 373423 MC_gene_2406 1 + 372113 373423 -chrV 376003 377763 LC_gene_2407 1 + 376003 377763 -chrV 377972 378872 HC_gene_2408 4 + 377972 378872 -chrV 382469 382732 HC_gene_2409 4 + 382469 382732 -chrV 387142 388070 HC_gene_2410 240 + 387142 387895 -chrV 394313 394930 LC_gene_2411 1 + 394313 394930 -chrV 396739 398125 HC_gene_2412 4297 + 396739 397802 -chrV 399487 400969 LC_gene_2413 1 + 399487 400969 -chrV 401107 402131 HC_gene_2414 314 + 401107 402106 -chrV 402151 402833 MC_gene_2415 1 + 402151 402833 -chrV 402343 402839 MC_gene_2416 1 + 402343 402839 -chrV 404624 406818 HC_gene_2417 52 + 404624 406814 -chrV 407147 409235 LC_gene_2418 1 + 407147 409235 -chrV 409699 413183 HC_gene_2419 153 + 409699 413013 -chrV 413249 413985 LC_gene_2420 1 + 413249 413985 -chrV 414462 415884 HC_gene_2421 86 + 414462 415884 -chrV 415856 416633 HC_gene_2422 25 + 415856 416598 -chrV 416755 418051 HC_gene_2423 10 + 416755 417279 -chrV 420141 421068 HC_gene_2424 5 + 420141 420987 -chrV 423568 424637 HC_gene_2425 2471 + 423568 424456 -chrV 424694 425517 HC_gene_2426 119 + 424694 425133 -chrV 425613 426294 LC_gene_2427 1 + 425613 426294 -chrV 430563 431140 MC_gene_2428 2 + 430563 431140 -chrV 432424 434530 HC_gene_2429 621 + 432424 434380 -chrV 434794 435280 LC_gene_2430 1 + 434794 435280 -chrV 435985 436427 LC_gene_2431 1 + 435985 436427 -chrV 436755 437191 LC_gene_2432 1 + 436755 437191 -chrV 437993 438639 MC_gene_2433 1 + 437993 438634 -chrV 439537 441297 HC_gene_2434 111 + 439537 441297 -chrV 440262 441441 HC_gene_2435 83 + 440262 441372 -chrV 441986 442518 MC_gene_2436 3 + 441986 442507 -chrV 442601 443059 HC_gene_2437 6 + 442601 443059 -chrV 449289 450489 HC_gene_2438 199 + 449289 450175 -chrV 451505 455296 HC_gene_2439 125 + 451505 455161 -chrV 456259 457814 HC_gene_2440 39 + 456259 457768 -chrV 457939 460479 MC_gene_2441 2 + 457939 460479 -chrV 460536 461089 MC_gene_2442 1 + 460536 461089 -chrV 461459 462348 MC_gene_2443 1 + 461459 462348 -chrV 462395 463495 HC_gene_2444 281 + 462395 462951 -chrV 465112 466488 HC_gene_2445 329 + 465112 466341 -chrV 467724 468982 HC_gene_2446 88 + 467724 468981 -chrV 469087 469689 MC_gene_2447 1 + 469087 469689 -chrV 475014 476512 HC_gene_2448 72 + 475014 476296 -chrV 482995 484160 MC_gene_2449 1 + 482995 483336 -chrV 484326 484753 MC_gene_2450 1 + 484326 484753 -chrV 484770 487342 HC_gene_2451 5 + 484770 487229 -chrV 487516 488144 MC_gene_2452 1 + 487516 488144 -chrV 490079 491526 HC_gene_2453 3 + 490079 491526 -chrV 491798 492240 LC_gene_2454 1 + 491798 492240 -chrV 497653 499143 MC_gene_2455 2 + 497653 499143 -chrV 500828 501535 LC_gene_2456 1 + 500828 501535 -chrV 502731 503136 MC_gene_2457 1 + 502731 503136 -chrV 503115 503426 MC_gene_2458 1 + 503115 503397 -chrV 504003 505010 HC_gene_2459 7 + 504003 504982 -chrV 505088 510010 HC_gene_2460 11 + 505088 509923 -chrV 510229 512406 HC_gene_2461 1036 + 510229 512258 -chrV 512442 514021 HC_gene_2462 1 + 512442 513445 -chrV 515492 517650 HC_gene_2463 3 + 515492 517650 -chrV 516883 518038 HC_gene_2464 26 + 516883 518038 -chrV 517827 520941 HC_gene_2465 12 + 517827 520941 -chrV 523086 525979 HC_gene_2466 16 + 523086 525979 -chrV 525949 526996 HC_gene_2467 17 + 525949 526996 -chrV 526965 529690 HC_gene_2468 30 + 526965 529690 -chrV 535847 536186 HC_gene_2469 4 + 535847 536186 -chrV 536298 538484 HC_gene_2470 7 + 536298 538455 -chrV 540722 541616 HC_gene_2471 3 + 540722 541576 -chrV 541646 545181 HC_gene_2472 73 + 541646 545173 -chrV 545201 546735 HC_gene_2473 2081 + 545201 546591 -chrV 546787 548360 HC_gene_2474 977 + 546787 548213 -chrV 548399 549673 MC_gene_2475 1 + 548399 549673 -chrV 548782 549735 MC_gene_2476 1 + 548782 549735 -chrV 552488 553408 HC_gene_2477 62 + 552488 553362 -chrV 554136 556064 HC_gene_2478 4 + 554136 556057 -chrV 556220 557254 MC_gene_2479 1 + 556220 557254 -chrV 556685 557436 MC_gene_2480 1 + 556685 557436 -chrV 559384 560421 HC_gene_2481 5 + 559384 560421 -chrV 560709 561649 LC_gene_2482 1 + 560709 561649 -chrV 562955 563357 MC_gene_2483 1 + 562955 563302 -chrV 563357 563962 LC_gene_2484 1 + 563357 563962 -chrV 565552 566920 MC_gene_2485 1 + 565552 566920 -chrV 567894 568982 HC_gene_2486 6 + 567894 568982 -chrV 569998 570634 LC_gene_2487 1 + 569998 570634 -chrV 571241 576470 LC_gene_2488 1 + 571241 576470 -chrV 196 5942 LC_gene_2489 1 - 196 5942 -chrV 6502 7555 HC_gene_2490 8 - 6502 7555 -chrV 8366 9772 HC_gene_2491 17 - 8431 9772 -chrV 10291 11314 HC_gene_2492 2 - 10291 11314 -chrV 12446 13353 MC_gene_2493 1 - 12446 13353 -chrV 14538 15070 HC_gene_2494 3 - 14538 15070 -chrV 15307 15896 MC_gene_2495 1 - 15307 15896 -chrV 15713 15952 MC_gene_2496 1 - 15713 15952 -chrV 21471 23270 LC_gene_2497 1 - 21471 23270 -chrV 25334 26490 HC_gene_2498 89 - 25394 26490 -chrV 29459 31269 HC_gene_2499 6 - 29466 31269 -chrV 31305 34423 HC_gene_2500 107 - 31374 34423 -chrV 36190 39661 HC_gene_2501 8 - 36274 39661 -chrV 39708 42119 HC_gene_2502 247 - 39816 42119 -chrV 42321 43070 HC_gene_2503 123 - 42332 43070 -chrV 44792 45928 HC_gene_2504 10 - 44908 45928 -chrV 46138 46891 HC_gene_2505 2 - 46186 46891 -chrV 48108 51595 HC_gene_2506 70 - 48302 51595 -chrV 51713 53246 HC_gene_2507 1621 - 51978 53246 -chrV 53768 56171 HC_gene_2508 23 - 53789 56171 -chrV 58690 59282 MC_gene_2509 1 - 58829 59282 -chrV 59492 60903 HC_gene_2510 99 - 59511 60903 -chrV 61022 61761 LC_gene_2511 1 - 61055 61761 -chrV 62137 62484 LC_gene_2512 1 - 62137 62484 -chrV 62789 65189 HC_gene_2513 42 - 62789 65189 -chrV 65209 68895 HC_gene_2514 911 - 65308 68895 -chrV 75759 77492 MC_gene_2515 1 - 75759 77492 -chrV 79524 80067 HC_gene_2516 94 - 79524 80067 -chrV 81221 82728 HC_gene_2517 221 - 81242 82728 -chrV 82884 84698 HC_gene_2518 164 - 82965 84698 -chrV 85438 86293 MC_gene_2519 1 - 85438 86293 -chrV 89252 89991 MC_gene_2520 1 - 89252 89991 -chrV 96490 97862 HC_gene_2521 51 - 96490 97862 -chrV 96738 99434 HC_gene_2522 1 - 96738 99434 -chrV 100234 100499 MC_gene_2523 1 - 100234 100499 -chrV 100607 101510 MC_gene_2524 2 - 100607 101510 -chrV 102239 106188 HC_gene_2525 6 - 102310 106188 -chrV 108359 111113 HC_gene_2526 3 - 108370 111113 -chrV 115805 116296 MC_gene_2527 1 - 115805 116296 -chrV 117111 117583 LC_gene_2528 1 - 117146 117583 -chrV 117632 118119 HC_gene_2529 28 - 117644 118119 -chrV 118468 121312 HC_gene_2530 6 - 118506 121312 -chrV 122029 122960 HC_gene_2531 3175 - 122328 122960 -chrV 122682 122984 HC_gene_2532 21 - 122682 122984 -chrV 123503 124153 MC_gene_2533 1 - 123503 124153 -chrV 124465 126402 HC_gene_2534 20 - 124638 126402 -chrV 130914 131424 LC_gene_2535 1 - 130914 131424 -chrV 132469 132722 HC_gene_2536 5 - 132482 132722 -chrV 132974 135269 LC_gene_2537 1 - 132974 135269 -chrV 135733 136398 HC_gene_2538 2 - 135733 136398 -chrV 137438 138453 LC_gene_2539 1 - 137438 138453 -chrV 138720 140336 HC_gene_2540 2020 - 138820 140336 -chrV 140352 140734 LC_gene_2541 1 - 140352 140734 -chrV 143803 144024 MC_gene_2542 1 - 143803 144024 -chrV 145805 146770 HC_gene_2543 17 - 145805 146770 -chrV 147129 147911 LC_gene_2544 1 - 147158 147911 -chrV 148502 150065 HC_gene_2545 208 - 148647 150065 -chrV 149997 151003 HC_gene_2546 363 - 149997 151003 -chrV 151093 151890 HC_gene_2547 37 - 151211 151890 -chrV 152206 153164 LC_gene_2548 1 - 152351 153164 -chrV 155878 156485 HC_gene_2549 43 - 156000 156485 -chrV 157479 159139 HC_gene_2550 218 - 157495 159139 -chrV 159064 160246 LC_gene_2551 1 - 159064 160246 -chrV 161263 162446 HC_gene_2552 3 - 161283 162446 -chrV 164406 164833 LC_gene_2553 1 - 164406 164833 -chrV 165844 166917 HC_gene_2554 58 - 165883 166917 -chrV 167670 171868 HC_gene_2555 28 - 167700 171868 -chrV 172414 173346 HC_gene_2556 106 - 172504 173346 -chrV 173767 174641 LC_gene_2557 1 - 173767 174641 -chrV 176062 177592 MC_gene_2558 1 - 176068 177592 -chrV 177983 178578 MC_gene_2559 1 - 178206 178578 -chrV 184299 186343 LC_gene_2560 1 - 184299 186343 -chrV 186709 188075 HC_gene_2561 30 - 186938 188075 -chrV 189279 191870 HC_gene_2562 8 - 189312 191870 -chrV 191883 192680 HC_gene_2563 31 - 191883 192680 -chrV 193527 194891 HC_gene_2564 621 - 194211 194891 -chrV 196239 196654 LC_gene_2565 1 - 196239 196654 -chrV 201906 202607 MC_gene_2566 1 - 201926 202607 -chrV 202865 204598 HC_gene_2567 2 - 202880 204598 -chrV 204646 204961 LC_gene_2568 1 - 204646 204961 -chrV 207443 208485 HC_gene_2569 283 - 207513 208485 -chrV 208676 210305 HC_gene_2570 80 - 208729 210305 -chrV 210582 211906 HC_gene_2571 22 - 210632 211906 -chrV 212291 213244 HC_gene_2572 161 - 212481 213244 -chrV 213712 214782 HC_gene_2573 469 - 213777 214782 -chrV 217886 221490 HC_gene_2574 3 - 217886 221490 -chrV 222629 223119 LC_gene_2575 1 - 222712 223119 -chrV 223119 225233 HC_gene_2576 451 - 223258 225233 -chrV 225695 228263 HC_gene_2577 10 - 225702 228263 -chrV 228318 229498 HC_gene_2578 8 - 228332 229498 -chrV 235238 237144 HC_gene_2579 967 - 235472 237144 -chrV 237368 239471 HC_gene_2580 204 - 237463 239471 -chrV 239880 241761 HC_gene_2581 16 - 239880 241761 -chrV 241792 242425 HC_gene_2582 6 - 241792 242425 -chrV 243697 246692 HC_gene_2583 1 - 243749 246692 -chrV 246602 248395 HC_gene_2584 182 - 246602 248395 -chrV 248578 249852 HC_gene_2585 37 - 248578 249852 -chrV 250856 251421 MC_gene_2586 1 - 250860 251421 -chrV 253659 254435 HC_gene_2587 187 - 253659 254435 -chrV 254464 255542 MC_gene_2588 1 - 254464 255542 -chrV 255996 258054 HC_gene_2589 297 - 256211 258054 -chrV 258055 260020 HC_gene_2590 184 - 258055 260020 -chrV 260547 261401 HC_gene_2591 34 - 260547 261401 -chrV 261778 264299 MC_gene_2592 4 - 261778 264299 -chrV 264515 265811 HC_gene_2593 778 - 264816 265811 -chrV 266132 270206 HC_gene_2594 3147 - 266388 270206 -chrV 270412 271170 HC_gene_2595 509 - 270431 271170 -chrV 271911 274412 MC_gene_2596 1 - 272085 274412 -chrV 273805 277778 MC_gene_2597 3 - 273805 277778 -chrV 278211 279667 HC_gene_2598 17 - 278233 279667 -chrV 279758 280743 HC_gene_2599 256 - 279758 280743 -chrV 281953 284313 HC_gene_2600 39 - 282182 284313 -chrV 285111 287183 HC_gene_2601 23 - 285111 287183 -chrV 287569 289342 MC_gene_2602 3 - 287569 289342 -chrV 290830 291551 HC_gene_2603 9 - 290830 291551 -chrV 292949 294831 LC_gene_2604 1 - 292949 294831 -chrV 298011 298246 HC_gene_2605 1 - 298011 298246 -chrV 298765 299220 LC_gene_2606 1 - 298765 299220 -chrV 301722 302350 HC_gene_2607 117 - 301740 302350 -chrV 302519 303172 HC_gene_2608 13 - 302644 303172 -chrV 303240 303599 MC_gene_2609 1 - 303240 303599 -chrV 305594 305875 HC_gene_2610 1 - 305594 305875 -chrV 308229 311344 HC_gene_2611 8 - 308271 311344 -chrV 311780 312087 LC_gene_2612 1 - 311809 312087 -chrV 312289 313977 HC_gene_2613 23 - 312289 313977 -chrV 314123 316548 HC_gene_2614 19 - 314146 316548 -chrV 316713 318542 HC_gene_2615 28 - 316732 318542 -chrV 318781 319490 MC_gene_2616 1 - 318781 319490 -chrV 319013 319763 MC_gene_2617 1 - 319013 319763 -chrV 323977 327050 HC_gene_2618 205 - 324010 327050 -chrV 327480 328173 MC_gene_2619 1 - 327480 328173 -chrV 329411 330343 LC_gene_2620 1 - 329411 330343 -chrV 330960 332104 LC_gene_2621 1 - 330960 332104 -chrV 332104 332858 HC_gene_2622 628 - 332371 332858 -chrV 332925 335247 HC_gene_2623 63 - 333039 335247 -chrV 335260 337653 HC_gene_2624 55 - 335260 337653 -chrV 339455 342324 HC_gene_2625 311 - 339634 342324 -chrV 342958 347695 HC_gene_2626 3 - 343260 347695 -chrV 347715 348414 HC_gene_2627 33 - 347781 348414 -chrV 348466 349447 HC_gene_2628 427 - 348558 349447 -chrV 352563 353105 MC_gene_2629 1 - 352563 353105 -chrV 353518 354005 LC_gene_2630 1 - 353518 354005 -chrV 357218 359081 HC_gene_2631 1 - 357218 359081 -chrV 358029 359332 HC_gene_2632 91 - 358029 359332 -chrV 359499 359912 LC_gene_2633 1 - 359499 359912 -chrV 360375 362245 HC_gene_2634 16 - 360375 362245 -chrV 363672 364252 MC_gene_2635 2 - 363705 364252 -chrV 367421 372060 HC_gene_2636 9 - 367616 372060 -chrV 373182 374722 HC_gene_2637 54 - 373182 374722 -chrV 374935 377783 HC_gene_2638 8 - 374935 377783 -chrV 378522 379339 HC_gene_2639 70 - 378530 379339 -chrV 378607 382216 HC_gene_2640 53 - 378607 382216 -chrV 382335 386189 HC_gene_2641 6 - 382448 386189 -chrV 387639 390186 HC_gene_2642 1 - 388060 390186 -chrV 390272 394034 HC_gene_2643 15 - 390300 394034 -chrV 394105 396272 HC_gene_2644 35 - 394161 396272 -chrV 397659 399233 HC_gene_2645 84 - 397659 399233 -chrV 399379 400869 HC_gene_2646 18 - 399399 400869 -chrV 401877 402304 HC_gene_2647 4 - 401877 402304 -chrV 402523 404434 HC_gene_2648 289 - 402733 404434 -chrV 406741 409104 HC_gene_2649 92 - 406762 409104 -chrV 409147 410064 MC_gene_2650 1 - 409179 410064 -chrV 411489 413096 LC_gene_2651 1 - 411489 413096 -chrV 413096 414207 HC_gene_2652 228 - 413245 414207 -chrV 415599 416507 LC_gene_2653 1 - 415599 416507 -chrV 420744 422514 HC_gene_2654 61 - 420894 422514 -chrV 424087 425431 HC_gene_2655 17 - 424349 425431 -chrV 427965 428611 MC_gene_2656 1 - 428014 428611 -chrV 428631 429919 MC_gene_2657 1 - 428747 429919 -chrV 428878 430724 MC_gene_2658 2 - 428878 430724 -chrV 431114 432214 HC_gene_2659 1 - 431330 432214 -chrV 432326 432809 LC_gene_2660 1 - 432428 432809 -chrV 434359 434696 MC_gene_2661 1 - 434359 434696 -chrV 434937 435609 HC_gene_2662 15 - 434964 435609 -chrV 436302 437844 HC_gene_2663 10 - 436302 437844 -chrV 436967 437998 HC_gene_2664 32 - 436967 437998 -chrV 441183 441840 HC_gene_2665 32 - 441186 441840 -chrV 442716 443510 MC_gene_2666 1 - 442716 443510 -chrV 443340 445391 MC_gene_2667 1 - 443340 445391 -chrV 449692 451344 HC_gene_2668 15 - 449692 451344 -chrV 455044 456065 HC_gene_2669 45 - 455055 456065 -chrV 457486 460231 HC_gene_2670 15 - 457686 460231 -chrV 460299 461783 HC_gene_2671 166 - 460347 461783 -chrV 462652 464883 HC_gene_2672 20 - 462860 464883 -chrV 466127 467548 HC_gene_2673 36 - 466127 467548 -chrV 467675 467955 MC_gene_2674 1 - 467685 467955 -chrV 468288 469213 HC_gene_2675 4 - 468288 469213 -chrV 469521 475239 HC_gene_2676 74 - 469603 475239 -chrV 476114 482857 HC_gene_2677 79 - 476190 482857 -chrV 483131 484358 HC_gene_2678 155 - 483208 484358 -chrV 487859 488533 MC_gene_2679 1 - 487859 488533 -chrV 488712 490782 HC_gene_2680 17 - 488712 490782 -chrV 491177 492136 HC_gene_2681 331 - 491364 492136 -chrV 492479 498165 LC_gene_2682 1 - 492628 498165 -chrV 498095 498837 MC_gene_2683 2 - 498095 498837 -chrV 498956 500396 HC_gene_2684 52 - 498990 500396 -chrV 500442 502933 HC_gene_2685 17 - 500444 502933 -chrV 502893 503789 HC_gene_2686 137 - 502893 503789 -chrV 509451 510228 HC_gene_2687 3 - 509795 510228 -chrV 516916 517410 LC_gene_2688 1 - 516916 517410 -chrV 520867 522696 HC_gene_2689 34 - 520910 522696 -chrV 525831 526429 MC_gene_2690 1 - 525831 526429 -chrV 526916 527331 MC_gene_2691 1 - 526916 527331 -chrV 529379 536079 HC_gene_2692 7 - 529404 536079 -chrV 538202 540393 HC_gene_2693 135 - 538320 540393 -chrV 540497 541464 HC_gene_2694 13 - 540499 541464 -chrV 542101 542447 MC_gene_2695 1 - 542101 542447 -chrV 542507 544651 MC_gene_2696 2 - 542507 544651 -chrV 544505 545035 MC_gene_2697 1 - 544505 545035 -chrV 546442 547423 MC_gene_2698 1 - 546463 547423 -chrV 548427 549194 HC_gene_2699 6 - 548427 549194 -chrV 549658 551171 HC_gene_2700 19 - 549658 551171 -chrV 551427 552358 MC_gene_2701 1 - 551447 552358 -chrV 553142 553971 HC_gene_2702 149 - 553240 553971 -chrV 554821 555738 MC_gene_2703 1 - 554826 555738 -chrV 555303 556799 MC_gene_2704 2 - 555303 556799 -chrV 557159 558971 HC_gene_2705 1 - 557159 558971 -chrV 561324 562819 HC_gene_2706 58 - 561324 562819 -chrV 564632 565350 HC_gene_2707 4 - 564632 565350 -chrV 565490 566406 HC_gene_2708 1 - 565490 566406 -chrV 566691 567114 MC_gene_2709 1 - 566691 567114 -chrV 567191 567593 HC_gene_2710 5 - 567191 567593 -chrV 570069 572022 LC_gene_2711 1 - 570102 572022 -chrVI 11601 12413 MC_gene_2712 1 + 11601 12413 -chrVI 13219 14065 LC_gene_2713 1 + 13219 14065 -chrVI 16680 17818 MC_gene_2714 1 + 16680 17796 -chrVI 23594 25367 LC_gene_2715 1 + 23594 25367 -chrVI 28205 32868 HC_gene_2716 2 + 28205 32868 -chrVI 36797 38845 HC_gene_2717 12 + 36797 38822 -chrVI 40411 42672 HC_gene_2718 23 + 40411 42630 -chrVI 42795 43635 HC_gene_2719 110 + 42795 43588 -chrVI 44035 45615 LC_gene_2720 1 + 44035 45585 -chrVI 47878 48987 HC_gene_2721 18 + 47878 48987 -chrVI 49115 51289 HC_gene_2722 35 + 49115 51281 -chrVI 52581 53104 LC_gene_2723 1 + 52581 53104 -chrVI 54972 55348 HC_gene_2724 27 + 54972 55348 -chrVI 55356 55618 MC_gene_2725 1 + 55356 55569 -chrVI 56269 58199 HC_gene_2726 463 + 56269 58064 -chrVI 58579 62938 HC_gene_2727 18 + 58579 62938 -chrVI 62922 64218 LC_gene_2728 1 + 62922 64218 -chrVI 65286 67945 HC_gene_2729 1 + 65286 67945 -chrVI 67964 68817 HC_gene_2730 18 + 67964 68817 -chrVI 73833 74689 LC_gene_2731 1 + 73833 74689 -chrVI 75111 76687 HC_gene_2732 675 + 75111 76563 -chrVI 76714 78138 HC_gene_2733 13 + 76714 78069 -chrVI 78769 79369 HC_gene_2734 3 + 78769 79369 -chrVI 80423 80990 LC_gene_2735 1 + 80423 80990 -chrVI 82548 84497 HC_gene_2736 12 + 82548 84141 -chrVI 86799 87545 MC_gene_2737 1 + 86799 87545 -chrVI 89654 90852 HC_gene_2738 20 + 89654 90765 -chrVI 90970 93562 HC_gene_2739 13 + 90970 93480 -chrVI 95295 96653 HC_gene_2740 12 + 95295 96653 -chrVI 96083 97846 HC_gene_2741 12 + 96083 97662 -chrVI 100448 100903 MC_gene_2742 1 + 100448 100903 -chrVI 102937 103263 HC_gene_2743 4 + 102937 103263 -chrVI 103652 103999 HC_gene_2744 135 + 103652 103999 -chrVI 104006 104704 HC_gene_2745 5 + 104006 104704 -chrVI 106847 107268 HC_gene_2746 3 + 106847 107213 -chrVI 107377 107789 LC_gene_2747 1 + 107377 107789 -chrVI 110173 110550 HC_gene_2748 25 + 110173 110550 -chrVI 110544 111652 LC_gene_2749 1 + 110544 111652 -chrVI 111821 112351 HC_gene_2750 22 + 111821 112351 -chrVI 112359 114050 LC_gene_2751 1 + 112359 114050 -chrVI 115952 118610 HC_gene_2752 6 + 115952 118607 -chrVI 119386 123292 HC_gene_2753 9 + 119386 123219 -chrVI 123354 126776 HC_gene_2754 2 + 123354 126610 -chrVI 127848 130100 HC_gene_2755 1 + 127848 129988 -chrVI 130195 131476 HC_gene_2756 314 + 130195 131205 -chrVI 132123 132598 HC_gene_2757 1 + 132123 132364 -chrVI 132618 134577 HC_gene_2758 74 + 132618 134372 -chrVI 134840 135424 HC_gene_2759 1 + 134840 135424 -chrVI 138946 143927 MC_gene_2760 1 + 138946 143927 -chrVI 142012 144068 MC_gene_2761 1 + 142012 144068 -chrVI 143947 144491 MC_gene_2762 1 + 143947 144491 -chrVI 144824 145452 LC_gene_2763 1 + 144824 145452 -chrVI 147132 148493 HC_gene_2764 31 + 147132 148493 -chrVI 149070 149908 HC_gene_2765 368 + 149070 149908 -chrVI 149999 152783 HC_gene_2766 35 + 149999 152630 -chrVI 153361 154498 HC_gene_2767 440 + 153361 154404 -chrVI 156273 157913 HC_gene_2768 153 + 156273 157842 -chrVI 159277 160436 HC_gene_2769 46 + 159277 160428 -chrVI 160517 161632 HC_gene_2770 26 + 160517 161632 -chrVI 161652 161965 MC_gene_2771 1 + 161652 161965 -chrVI 162414 164964 HC_gene_2772 127 + 162414 164964 -chrVI 164983 166658 HC_gene_2773 112 + 164983 166658 -chrVI 165942 166781 HC_gene_2774 65 + 165942 166769 -chrVI 166781 167182 LC_gene_2775 1 + 166781 167182 -chrVI 167993 169571 MC_gene_2776 1 + 167993 169571 -chrVI 169860 172409 HC_gene_2777 31 + 169860 172403 -chrVI 174194 174955 MC_gene_2778 1 + 174194 174955 -chrVI 174938 176481 LC_gene_2779 1 + 174938 176481 -chrVI 177058 177590 MC_gene_2780 2 + 177058 177590 -chrVI 177403 177838 MC_gene_2781 1 + 177403 177838 -chrVI 184490 191482 HC_gene_2782 4 + 184490 191386 -chrVI 191763 193860 HC_gene_2783 19 + 191763 193828 -chrVI 194716 196472 HC_gene_2784 27 + 194716 196425 -chrVI 196544 197537 HC_gene_2785 3 + 196544 197537 -chrVI 199785 201815 LC_gene_2786 1 + 199785 201815 -chrVI 203684 204275 MC_gene_2787 1 + 203684 204037 -chrVI 204722 205747 MC_gene_2788 1 + 204722 205747 -chrVI 206033 207064 HC_gene_2789 3 + 206033 207064 -chrVI 207375 208431 HC_gene_2790 12 + 207375 208427 -chrVI 210872 213171 HC_gene_2791 14 + 210872 213024 -chrVI 213191 216507 HC_gene_2792 11 + 213191 216488 -chrVI 221701 222063 MC_gene_2793 1 + 221701 222063 -chrVI 222066 222457 LC_gene_2794 1 + 222066 222445 -chrVI 223905 224271 MC_gene_2795 1 + 223905 224271 -chrVI 224239 224473 MC_gene_2796 1 + 224239 224473 -chrVI 225575 226702 HC_gene_2797 179 + 225575 226583 -chrVI 226940 227604 HC_gene_2798 52 + 226940 227535 -chrVI 229384 232041 HC_gene_2799 12 + 229384 232032 -chrVI 233950 237479 HC_gene_2800 51 + 233950 237326 -chrVI 238408 240006 HC_gene_2801 32 + 238408 240006 -chrVI 241980 243067 HC_gene_2802 20 + 241980 243067 -chrVI 245026 245754 LC_gene_2803 1 + 245026 245752 -chrVI 246113 248262 HC_gene_2804 16 + 246113 248186 -chrVI 248356 249051 HC_gene_2805 233 + 248356 249014 -chrVI 250163 250541 MC_gene_2806 1 + 250163 250541 -chrVI 250743 251925 LC_gene_2807 1 + 250743 251925 -chrVI 252088 252363 HC_gene_2808 1 + 252088 252363 -chrVI 252463 253558 HC_gene_2809 342 + 252463 253528 -chrVI 255609 256491 MC_gene_2810 1 + 255609 256491 -chrVI 255738 257064 MC_gene_2811 3 + 255738 257064 -chrVI 256497 257681 MC_gene_2812 1 + 256497 257681 -chrVI 256790 258702 MC_gene_2813 1 + 256790 258702 -chrVI 260947 261716 MC_gene_2814 1 + 260947 261716 -chrVI 261761 262049 MC_gene_2815 1 + 261761 262049 -chrVI 263913 265838 HC_gene_2816 105 + 263913 265707 -chrVI 265838 266259 LC_gene_2817 1 + 265838 266259 -chrVI 267097 269069 LC_gene_2818 1 + 267097 269069 -chrVI 5953 6125 MC_gene_2819 1 - 5953 6125 -chrVI 8456 11062 HC_gene_2820 2 - 8456 11062 -chrVI 12156 12474 MC_gene_2821 1 - 12156 12474 -chrVI 14087 16493 HC_gene_2822 11 - 14190 16493 -chrVI 20776 22863 HC_gene_2823 4 - 20776 22863 -chrVI 25293 26437 MC_gene_2824 1 - 25293 26437 -chrVI 25383 27891 MC_gene_2825 1 - 25383 27891 -chrVI 30441 31084 MC_gene_2826 1 - 30441 31084 -chrVI 31539 32002 LC_gene_2827 1 - 31539 32002 -chrVI 32996 36580 HC_gene_2828 1 - 32996 36580 -chrVI 38556 40203 HC_gene_2829 69 - 38730 40203 -chrVI 43218 45592 HC_gene_2830 838 - 43467 45592 -chrVI 45626 47778 HC_gene_2831 7 - 45626 47778 -chrVI 48567 48964 LC_gene_2832 1 - 48567 48964 -chrVI 51302 52998 LC_gene_2833 1 - 51302 52998 -chrVI 52969 54817 HC_gene_2834 3579 - 52969 54817 -chrVI 55015 56020 HC_gene_2835 899 - 55243 56020 -chrVI 62742 64035 HC_gene_2836 27 - 62841 64035 -chrVI 64081 64975 HC_gene_2837 774 - 64155 64975 -chrVI 68871 72547 HC_gene_2838 9 - 68890 72547 -chrVI 73841 74596 HC_gene_2839 1 - 74488 74596 -chrVI 76370 77749 HC_gene_2840 1 - 76422 77749 -chrVI 77985 79201 HC_gene_2841 40 - 77985 79201 -chrVI 79230 80236 HC_gene_2842 106 - 79267 80236 -chrVI 80288 81911 HC_gene_2843 21 - 80340 81911 -chrVI 83919 87312 HC_gene_2844 6 - 83968 87312 -chrVI 87434 90660 HC_gene_2845 44 - 87438 90660 -chrVI 93136 95182 HC_gene_2846 258 - 93310 95182 -chrVI 95748 97479 MC_gene_2847 1 - 95748 97479 -chrVI 97525 98765 HC_gene_2848 17 - 97525 98765 -chrVI 99078 99632 MC_gene_2849 1 - 99078 99632 -chrVI 101496 103213 HC_gene_2850 365 - 101517 103213 -chrVI 103169 103557 HC_gene_2851 1 - 103169 103557 -chrVI 103649 104495 HC_gene_2852 194 - 103798 104495 -chrVI 104596 106298 HC_gene_2853 161 - 104596 106298 -chrVI 107680 109953 HC_gene_2854 30 - 107680 109953 -chrVI 111111 111859 HC_gene_2855 14 - 111111 111859 -chrVI 113944 114542 MC_gene_2856 1 - 113944 114542 -chrVI 114807 115773 HC_gene_2857 565 - 114982 115773 -chrVI 118703 119127 MC_gene_2858 1 - 118703 119127 -chrVI 127414 129617 LC_gene_2859 1 - 127414 129617 -chrVI 130257 131627 HC_gene_2860 17 - 130257 131627 -chrVI 133942 135820 MC_gene_2861 2 - 133942 135820 -chrVI 134394 135901 MC_gene_2862 1 - 134394 135901 -chrVI 137146 137897 LC_gene_2863 1 - 137146 137897 -chrVI 143306 143922 LC_gene_2864 1 - 143306 143922 -chrVI 144292 144568 MC_gene_2865 1 - 144292 144568 -chrVI 144779 146951 HC_gene_2866 71 - 144901 146951 -chrVI 148650 149122 LC_gene_2867 1 - 148650 149122 -chrVI 152395 153250 HC_gene_2868 146 - 152492 153250 -chrVI 154144 155881 HC_gene_2869 43 - 154318 155881 -chrVI 156285 156521 LC_gene_2870 1 - 156285 156521 -chrVI 156805 157804 MC_gene_2871 1 - 156805 157804 -chrVI 158177 159326 HC_gene_2872 9 - 158177 159326 -chrVI 161443 162116 MC_gene_2873 1 - 161443 162116 -chrVI 165319 166385 LC_gene_2874 1 - 165319 166385 -chrVI 166516 167291 HC_gene_2875 160 - 166578 167291 -chrVI 167641 168400 MC_gene_2876 1 - 167641 168400 -chrVI 172222 173912 HC_gene_2877 62 - 172227 173912 -chrVI 174067 176475 HC_gene_2878 27 - 174086 176475 -chrVI 176400 180837 HC_gene_2879 48 - 176400 180837 -chrVI 182156 182940 HC_gene_2880 66 - 182156 182940 -chrVI 182966 184284 HC_gene_2881 94 - 182966 184284 -chrVI 191684 192834 LC_gene_2882 1 - 191729 192834 -chrVI 193739 194243 MC_gene_2883 1 - 193739 194243 -chrVI 193802 196305 MC_gene_2884 1 - 193802 196305 -chrVI 200160 201171 LC_gene_2885 1 - 200160 201171 -chrVI 201688 203444 HC_gene_2886 161 - 201720 203444 -chrVI 203564 204775 HC_gene_2887 13 - 203596 204775 -chrVI 205652 207259 HC_gene_2888 7 - 205664 207259 -chrVI 207322 207753 MC_gene_2889 1 - 207322 207753 -chrVI 208170 210116 HC_gene_2890 50 - 208335 210116 -chrVI 212979 213407 HC_gene_2891 3 - 212979 213407 -chrVI 216501 220142 HC_gene_2892 28 - 216540 220142 -chrVI 220172 221529 HC_gene_2893 1865 - 220249 221529 -chrVI 222812 223794 HC_gene_2894 6324 - 223134 223794 -chrVI 224031 225994 HC_gene_2895 577 - 224174 225994 -chrVI 226836 227325 MC_gene_2896 1 - 226875 227325 -chrVI 227325 229193 HC_gene_2897 223 - 227352 229193 -chrVI 231820 233666 HC_gene_2898 19 - 231946 233666 -chrVI 237180 238279 HC_gene_2899 63 - 237183 238279 -chrVI 238861 239836 HC_gene_2900 30 - 239057 239836 -chrVI 239908 241843 HC_gene_2901 346 - 239936 241843 -chrVI 242827 245201 HC_gene_2902 166 - 242827 245201 -chrVI 245310 245934 MC_gene_2903 1 - 245310 245934 -chrVI 248393 248595 MC_gene_2904 1 - 248393 248595 -chrVI 248740 249920 HC_gene_2905 339 - 248989 249920 -chrVI 249999 251857 HC_gene_2906 195 - 250089 251857 -chrVI 251896 252280 MC_gene_2907 1 - 251946 252280 -chrVI 253421 255326 HC_gene_2908 720 - 253421 255326 -chrVI 256936 260036 LC_gene_2909 1 - 256936 260036 -chrVI 262403 263326 HC_gene_2910 23 - 262469 263326 -chrVI 265903 266678 MC_gene_2911 1 - 265903 266678 -chrVI 266163 267390 MC_gene_2912 1 - 266163 267390 -chrVII 8409 10049 LC_gene_2913 1 + 8409 10049 -chrVII 10446 11973 HC_gene_2914 6 + 10446 11973 -chrVII 12289 13587 LC_gene_2915 1 + 12289 13587 -chrVII 14464 16511 HC_gene_2916 42 + 14464 16487 -chrVII 16511 17121 MC_gene_2917 1 + 16511 17121 -chrVII 18918 22244 HC_gene_2918 22 + 18918 22204 -chrVII 22293 23942 HC_gene_2919 19 + 22293 23942 -chrVII 23886 25860 HC_gene_2920 2678 + 23886 25584 -chrVII 27763 28552 MC_gene_2921 1 + 27763 28525 -chrVII 30388 31070 MC_gene_2922 2 + 30388 31070 -chrVII 31904 32844 HC_gene_2923 32 + 31904 32844 -chrVII 32946 34694 LC_gene_2924 1 + 32946 34694 -chrVII 35587 36891 HC_gene_2925 46 + 35587 36856 -chrVII 36941 37680 HC_gene_2926 78 + 36941 37680 -chrVII 39006 41401 HC_gene_2927 584 + 39006 41398 -chrVII 41440 43263 HC_gene_2928 153 + 41440 43263 -chrVII 43331 44642 HC_gene_2929 40 + 43331 44614 -chrVII 45411 48487 HC_gene_2930 9 + 45411 48487 -chrVII 49548 50747 HC_gene_2931 3 + 49548 50218 -chrVII 50767 52624 HC_gene_2932 10 + 50767 52480 -chrVII 53389 53790 MC_gene_2933 1 + 53389 53789 -chrVII 56462 59010 HC_gene_2934 422 + 56462 58994 -chrVII 59091 61942 HC_gene_2935 27 + 59091 61920 -chrVII 62051 63130 HC_gene_2936 159 + 62051 63075 -chrVII 63762 64433 HC_gene_2937 5 + 63762 64324 -chrVII 67550 69556 HC_gene_2938 71 + 67550 69496 -chrVII 69642 72738 HC_gene_2939 8 + 69642 72738 -chrVII 73333 73843 HC_gene_2940 51 + 73333 73775 -chrVII 74549 76677 HC_gene_2941 7 + 74549 76609 -chrVII 76786 79068 HC_gene_2942 336 + 76786 79065 -chrVII 79206 80601 LC_gene_2943 1 + 79206 80601 -chrVII 81430 83060 HC_gene_2944 384 + 81430 82947 -chrVII 84616 87467 HC_gene_2945 7 + 84616 87355 -chrVII 87507 90075 HC_gene_2946 236 + 87507 89912 -chrVII 90520 91315 LC_gene_2947 1 + 90520 91315 -chrVII 91447 93702 HC_gene_2948 8 + 91447 93702 -chrVII 92487 93709 HC_gene_2949 24 + 92487 93709 -chrVII 93755 94724 HC_gene_2950 94 + 93755 94695 -chrVII 95244 95744 HC_gene_2951 1 + 95244 95738 -chrVII 95818 97252 HC_gene_2952 189 + 95818 97123 -chrVII 97318 98750 HC_gene_2953 4 + 97318 98718 -chrVII 98874 102393 HC_gene_2954 150 + 98874 102329 -chrVII 109807 110592 MC_gene_2955 1 + 109807 110592 -chrVII 111624 112170 LC_gene_2956 1 + 111624 112170 -chrVII 114932 115725 HC_gene_2957 28 + 114932 115689 -chrVII 115934 117747 HC_gene_2958 368 + 115934 117747 -chrVII 121164 122149 MC_gene_2959 1 + 121164 122149 -chrVII 122420 122875 HC_gene_2960 5 + 122420 122869 -chrVII 123582 124662 HC_gene_2961 109 + 123582 124662 -chrVII 124696 125759 MC_gene_2962 1 + 124696 125263 -chrVII 127566 129481 MC_gene_2963 2 + 127566 129481 -chrVII 129473 129786 HC_gene_2964 6 + 129473 129786 -chrVII 129816 131397 HC_gene_2965 55 + 129816 131268 -chrVII 131480 134139 HC_gene_2966 1 + 131480 133442 -chrVII 134159 139869 HC_gene_2967 108 + 134159 139664 -chrVII 140412 141394 MC_gene_2968 1 + 140412 141394 -chrVII 142009 144090 LC_gene_2969 1 + 142009 144090 -chrVII 144356 145551 HC_gene_2970 326 + 144356 145449 -chrVII 147867 148478 MC_gene_2971 1 + 147867 148169 -chrVII 149532 150627 MC_gene_2972 2 + 149532 150627 -chrVII 153202 154762 MC_gene_2973 1 + 153202 154612 -chrVII 154916 156202 LC_gene_2974 1 + 154916 156202 -chrVII 157851 159249 HC_gene_2975 102 + 157851 159208 -chrVII 159882 163031 HC_gene_2976 1 + 159882 163031 -chrVII 163154 163442 MC_gene_2977 1 + 163154 163442 -chrVII 165571 166079 LC_gene_2978 1 + 165571 166079 -chrVII 166351 166674 HC_gene_2979 4 + 166351 166674 -chrVII 167053 167432 HC_gene_2980 1 + 167053 167395 -chrVII 167846 168758 HC_gene_2981 1 + 167846 168083 -chrVII 169572 171302 HC_gene_2982 65 + 169572 171217 -chrVII 173271 174451 MC_gene_2983 1 + 173271 174451 -chrVII 174523 175554 HC_gene_2984 18 + 174523 175548 -chrVII 180666 182251 HC_gene_2985 79 + 180666 182230 -chrVII 182363 185088 HC_gene_2986 43 + 182363 185088 -chrVII 185984 187578 HC_gene_2987 37 + 185984 187545 -chrVII 191106 192075 HC_gene_2988 58 + 191106 191958 -chrVII 193496 193667 HC_gene_2989 5 + 193496 193667 -chrVII 197988 199385 HC_gene_2990 52 + 197988 199215 -chrVII 199802 200414 MC_gene_2991 1 + 199802 200414 -chrVII 200436 202424 HC_gene_2992 19 + 200436 202391 -chrVII 202700 203973 HC_gene_2993 20 + 202700 203924 -chrVII 205776 206421 HC_gene_2994 1 + 205776 206421 -chrVII 206717 208668 MC_gene_2995 2 + 206717 208668 -chrVII 208952 210177 HC_gene_2996 129 + 208952 210142 -chrVII 210332 213782 MC_gene_2997 1 + 210332 213782 -chrVII 212894 213795 MC_gene_2998 1 + 212894 213795 -chrVII 213940 215647 HC_gene_2999 33 + 213940 215608 -chrVII 216246 217444 HC_gene_3000 89 + 216246 217347 -chrVII 217467 221046 HC_gene_3001 47 + 217467 221011 -chrVII 226362 227891 HC_gene_3002 557 + 226362 227640 -chrVII 228777 230121 MC_gene_3003 1 + 228777 230121 -chrVII 230171 232603 HC_gene_3004 23 + 230171 232482 -chrVII 234728 235213 LC_gene_3005 1 + 234728 235213 -chrVII 235756 236235 MC_gene_3006 1 + 235756 236235 -chrVII 238343 241208 HC_gene_3007 14 + 238343 241183 -chrVII 245400 248510 HC_gene_3008 19 + 245400 248504 -chrVII 249843 253103 HC_gene_3009 31 + 249843 253103 -chrVII 251640 253206 HC_gene_3010 103 + 251640 253159 -chrVII 254575 255484 HC_gene_3011 2568 + 254575 255388 -chrVII 255564 257068 HC_gene_3012 29 + 255564 257022 -chrVII 257505 261582 HC_gene_3013 30 + 257505 261574 -chrVII 266101 267828 HC_gene_3014 34 + 266101 267668 -chrVII 268942 269205 MC_gene_3015 1 + 268942 269205 -chrVII 269250 270483 HC_gene_3016 4 + 269250 270370 -chrVII 270935 272397 HC_gene_3017 79 + 270935 272397 -chrVII 272376 274791 HC_gene_3018 32 + 272376 274778 -chrVII 275466 276781 MC_gene_3019 1 + 275466 276781 -chrVII 276368 276918 MC_gene_3020 1 + 276368 276912 -chrVII 277518 278770 HC_gene_3021 5628 + 277518 278472 -chrVII 280777 281351 HC_gene_3022 5 + 280777 281248 -chrVII 284422 286234 HC_gene_3023 4 + 284422 286234 -chrVII 286136 287154 HC_gene_3024 1 + 286136 287154 -chrVII 288429 289572 HC_gene_3025 188 + 288429 289534 -chrVII 289592 291830 HC_gene_3026 20 + 289592 291742 -chrVII 291911 293170 HC_gene_3027 128 + 291911 293083 -chrVII 293216 295726 HC_gene_3028 22 + 293216 295706 -chrVII 295842 298192 HC_gene_3029 12 + 295842 298192 -chrVII 299955 301737 HC_gene_3030 88 + 299955 301698 -chrVII 303615 303942 LC_gene_3031 1 + 303615 303942 -chrVII 304175 304866 LC_gene_3032 1 + 304175 304866 -chrVII 306530 307350 HC_gene_3033 636 + 306530 307264 -chrVII 307412 308941 HC_gene_3034 659 + 307412 308692 -chrVII 308989 309477 LC_gene_3035 1 + 308989 309477 -chrVII 310949 313113 HC_gene_3036 3501 + 310949 313092 -chrVII 313195 314393 HC_gene_3037 111 + 313195 314374 -chrVII 314610 316714 HC_gene_3038 55 + 314610 316688 -chrVII 316787 317329 HC_gene_3039 22 + 316787 317329 -chrVII 317296 319050 HC_gene_3040 20 + 317296 319050 -chrVII 320041 320528 HC_gene_3041 61 + 320041 320528 -chrVII 321738 323579 HC_gene_3042 118 + 321738 323579 -chrVII 324304 325280 MC_gene_3043 1 + 324304 325280 -chrVII 325291 328329 HC_gene_3044 12 + 325291 328278 -chrVII 328582 328858 MC_gene_3045 1 + 328582 328858 -chrVII 334855 337702 HC_gene_3046 10 + 334855 337678 -chrVII 337792 341986 HC_gene_3047 20 + 337792 341975 -chrVII 342416 343195 LC_gene_3048 1 + 342416 343195 -chrVII 343285 345393 HC_gene_3049 18 + 343285 345393 -chrVII 345985 346783 HC_gene_3050 171 + 345985 346438 -chrVII 347185 349456 HC_gene_3051 64 + 347185 349439 -chrVII 349575 350733 HC_gene_3052 47 + 349575 350648 -chrVII 352988 355608 HC_gene_3053 24 + 352988 355600 -chrVII 355746 357175 HC_gene_3054 94 + 355746 357164 -chrVII 357175 358653 MC_gene_3055 1 + 357175 358653 -chrVII 358602 359377 HC_gene_3056 185 + 358602 359307 -chrVII 359414 360257 HC_gene_3057 34 + 359414 360236 -chrVII 361051 361979 LC_gene_3058 1 + 361051 361979 -chrVII 362086 364060 HC_gene_3059 3 + 362086 364051 -chrVII 366353 366708 MC_gene_3060 1 + 366353 366706 -chrVII 368675 371332 HC_gene_3061 14 + 368675 371313 -chrVII 371352 374320 HC_gene_3062 17 + 371352 374238 -chrVII 375038 375941 HC_gene_3063 231 + 375038 375854 -chrVII 376017 377394 HC_gene_3064 36 + 376017 377294 -chrVII 377432 379815 HC_gene_3065 52 + 377432 379809 -chrVII 380133 381630 LC_gene_3066 1 + 380133 381519 -chrVII 382187 382743 LC_gene_3067 1 + 382187 382743 -chrVII 383396 385181 HC_gene_3068 11 + 383396 385181 -chrVII 385138 388897 HC_gene_3069 71 + 385138 388875 -chrVII 388947 389479 MC_gene_3070 2 + 388947 389479 -chrVII 389946 392271 HC_gene_3071 10 + 389946 392271 -chrVII 392186 393825 HC_gene_3072 25 + 392186 393751 -chrVII 393924 395094 HC_gene_3073 121 + 393924 394927 -chrVII 395158 396037 MC_gene_3074 1 + 395158 396037 -chrVII 398170 398658 HC_gene_3075 20 + 398170 398603 -chrVII 399210 400556 HC_gene_3076 660 + 399210 400549 -chrVII 400697 401480 LC_gene_3077 1 + 400697 401480 -chrVII 401838 403610 HC_gene_3078 129 + 401838 403610 -chrVII 403639 404503 MC_gene_3079 1 + 403639 404503 -chrVII 405474 405713 MC_gene_3080 1 + 405474 405713 -chrVII 405730 406885 HC_gene_3081 72 + 405730 406885 -chrVII 411463 412381 MC_gene_3082 1 + 411463 412381 -chrVII 412475 413681 LC_gene_3083 1 + 412475 413681 -chrVII 413672 415941 HC_gene_3084 17 + 413672 415941 -chrVII 416381 417155 LC_gene_3085 1 + 416381 417155 -chrVII 417459 419514 HC_gene_3086 199 + 417459 419424 -chrVII 420909 421222 MC_gene_3087 1 + 420909 421222 -chrVII 420976 421475 MC_gene_3088 1 + 420976 421475 -chrVII 422127 422969 HC_gene_3089 16 + 422127 422916 -chrVII 423853 425293 HC_gene_3090 147 + 423853 425130 -chrVII 426960 427929 HC_gene_3091 4 + 426960 427375 -chrVII 428491 430698 HC_gene_3092 3 + 428491 430650 -chrVII 430915 431490 MC_gene_3093 2 + 430915 431490 -chrVII 433495 435102 HC_gene_3094 8 + 433495 435102 -chrVII 436188 436756 HC_gene_3095 6 + 436188 436738 -chrVII 439031 439913 HC_gene_3096 4627 + 439031 439874 -chrVII 440019 440721 HC_gene_3097 319 + 440019 440614 -chrVII 442046 443137 MC_gene_3098 1 + 442046 443137 -chrVII 444020 444460 LC_gene_3099 1 + 444020 444460 -chrVII 444675 446374 LC_gene_3100 1 + 444675 446374 -chrVII 448787 450274 LC_gene_3101 1 + 448787 450274 -chrVII 452337 454752 HC_gene_3102 124 + 452337 454641 -chrVII 454826 457353 HC_gene_3103 22 + 454826 457193 -chrVII 458078 459257 HC_gene_3104 157 + 458078 459104 -chrVII 459836 461535 HC_gene_3105 17 + 459836 461482 -chrVII 461611 464164 HC_gene_3106 3 + 461611 463981 -chrVII 464184 465083 HC_gene_3107 12 + 464184 465067 -chrVII 465730 466696 HC_gene_3108 3 + 465730 466058 -chrVII 466716 468966 HC_gene_3109 37 + 466716 468896 -chrVII 468966 471010 MC_gene_3110 1 + 468966 471010 -chrVII 472816 474552 HC_gene_3111 268 + 472816 474383 -chrVII 475493 476386 HC_gene_3112 63 + 475493 476268 -chrVII 483925 485109 HC_gene_3113 2 + 483925 484596 -chrVII 485898 489561 HC_gene_3114 56 + 485898 489561 -chrVII 489649 491206 MC_gene_3115 1 + 489649 491181 -chrVII 494464 495476 HC_gene_3116 106 + 494464 495391 -chrVII 497905 498445 HC_gene_3117 4 + 497905 498434 -chrVII 499556 500076 MC_gene_3118 1 + 499556 500076 -chrVII 500119 502620 HC_gene_3119 10 + 500119 502612 -chrVII 502908 504661 HC_gene_3120 21 + 502908 504661 -chrVII 506057 508489 HC_gene_3121 112 + 506057 508489 -chrVII 508835 509094 MC_gene_3122 1 + 508835 509094 -chrVII 511314 513013 HC_gene_3123 23 + 511314 512921 -chrVII 513135 514478 HC_gene_3124 39 + 513135 514430 -chrVII 514529 516643 HC_gene_3125 12 + 514529 516643 -chrVII 516676 521495 HC_gene_3126 32 + 516676 520991 -chrVII 522294 523699 HC_gene_3127 12 + 522294 523699 -chrVII 523626 525177 HC_gene_3128 82 + 523626 525177 -chrVII 525189 526744 HC_gene_3129 198 + 525189 526737 -chrVII 527031 527421 LC_gene_3130 1 + 527031 527421 -chrVII 527625 528721 HC_gene_3131 30 + 527625 528599 -chrVII 529247 531296 HC_gene_3132 4 + 529247 531213 -chrVII 531613 531957 MC_gene_3133 1 + 531613 531926 -chrVII 532843 534079 HC_gene_3134 285 + 532843 533982 -chrVII 534079 534324 MC_gene_3135 1 + 534079 534324 -chrVII 535111 535759 HC_gene_3136 12 + 535111 535759 -chrVII 537209 540187 LC_gene_3137 1 + 537209 540187 -chrVII 542051 543465 HC_gene_3138 35 + 542051 543459 -chrVII 543551 544440 HC_gene_3139 144 + 543551 544440 -chrVII 545247 546066 HC_gene_3140 8 + 545247 545903 -chrVII 546408 554125 HC_gene_3141 34 + 546408 554086 -chrVII 555783 557116 HC_gene_3142 4267 + 555783 556803 -chrVII 558021 559459 HC_gene_3143 3 + 558021 559459 -chrVII 559196 559687 HC_gene_3144 47 + 559196 559680 -chrVII 560341 561638 HC_gene_3145 153 + 560341 561412 -chrVII 567872 568055 MC_gene_3146 1 + 567872 567984 -chrVII 574669 574894 MC_gene_3147 1 + 574669 574845 -chrVII 574915 577116 HC_gene_3148 24 + 574915 577116 -chrVII 576943 580595 HC_gene_3149 90 + 576943 580451 -chrVII 582079 584200 MC_gene_3150 1 + 582079 584200 -chrVII 584404 586519 HC_gene_3151 43 + 584404 586396 -chrVII 589769 591113 HC_gene_3152 102 + 589769 590988 -chrVII 591264 592149 HC_gene_3153 120 + 591264 592149 -chrVII 593133 593411 HC_gene_3154 43 + 593133 593411 -chrVII 593463 594856 MC_gene_3155 1 + 593463 594856 -chrVII 594052 594877 MC_gene_3156 1 + 594052 594877 -chrVII 596520 599323 HC_gene_3157 138 + 596520 599323 -chrVII 599285 601519 HC_gene_3158 145 + 599285 601289 -chrVII 601611 604591 HC_gene_3159 15 + 601611 604528 -chrVII 605075 605768 LC_gene_3160 1 + 605075 605768 -chrVII 605795 606064 HC_gene_3161 2 + 605795 606064 -chrVII 606113 607614 HC_gene_3162 24 + 606113 607590 -chrVII 608614 609191 MC_gene_3163 1 + 608614 609191 -chrVII 609407 610215 HC_gene_3164 5 + 609407 609687 -chrVII 610516 611975 HC_gene_3165 417 + 610516 611798 -chrVII 616315 618089 HC_gene_3166 1 + 616315 618042 -chrVII 620470 621906 MC_gene_3167 1 + 620470 621906 -chrVII 622028 622357 HC_gene_3168 24 + 622028 622357 -chrVII 627298 627737 HC_gene_3169 2 + 627298 627737 -chrVII 627777 631399 HC_gene_3170 2 + 627777 631399 -chrVII 634262 635591 HC_gene_3171 37 + 634262 635591 -chrVII 635698 636570 HC_gene_3172 130 + 635698 636453 -chrVII 637773 638423 HC_gene_3173 2 + 637773 638400 -chrVII 639641 640429 LC_gene_3174 1 + 639641 640429 -chrVII 640802 642001 HC_gene_3175 112 + 640802 642001 -chrVII 641979 643183 HC_gene_3176 101 + 641979 643096 -chrVII 643995 645019 HC_gene_3177 435 + 643995 644843 -chrVII 649285 649554 MC_gene_3178 1 + 649285 649554 -chrVII 650853 651273 MC_gene_3179 1 + 650853 651273 -chrVII 651716 652988 LC_gene_3180 1 + 651716 652988 -chrVII 653745 654362 LC_gene_3181 1 + 653745 654362 -chrVII 654432 656409 HC_gene_3182 13 + 654432 656409 -chrVII 656692 659922 HC_gene_3183 32 + 656692 659901 -chrVII 660074 661532 HC_gene_3184 3 + 660074 661532 -chrVII 662088 665550 HC_gene_3185 6 + 662088 663713 -chrVII 665570 666225 HC_gene_3186 24 + 665570 666167 -chrVII 666270 667966 HC_gene_3187 13 + 666270 667933 -chrVII 668128 670213 HC_gene_3188 37 + 668128 670185 -chrVII 670336 672109 HC_gene_3189 36 + 670336 671994 -chrVII 672188 675772 HC_gene_3190 561 + 672188 675693 -chrVII 676572 677707 HC_gene_3191 12 + 676572 677628 -chrVII 678393 678534 HC_gene_3192 1 + 678393 678534 -chrVII 678650 679923 HC_gene_3193 1 + 678650 679920 -chrVII 681463 682459 HC_gene_3194 17 + 681463 682399 -chrVII 687832 690071 HC_gene_3195 3 + 687832 690046 -chrVII 690161 691778 HC_gene_3196 1 + 690161 691721 -chrVII 692104 693188 HC_gene_3197 8 + 692104 693176 -chrVII 693325 694625 HC_gene_3198 33 + 693325 694600 -chrVII 695387 697623 HC_gene_3199 411 + 695387 697555 -chrVII 698548 699111 HC_gene_3200 476 + 698548 699005 -chrVII 699111 700000 MC_gene_3201 1 + 699111 700000 -chrVII 700096 700622 HC_gene_3202 2 + 700096 700496 -chrVII 701177 701317 MC_gene_3203 1 + 701177 701317 -chrVII 701255 701885 MC_gene_3204 1 + 701255 701885 -chrVII 701754 702552 MC_gene_3205 1 + 701754 702552 -chrVII 702125 703378 MC_gene_3206 1 + 702125 703378 -chrVII 703426 705525 HC_gene_3207 53 + 703426 705208 -chrVII 711947 712454 LC_gene_3208 1 + 711947 712454 -chrVII 713656 715148 HC_gene_3209 2 + 713656 715148 -chrVII 715485 717159 HC_gene_3210 55 + 715485 717159 -chrVII 717293 718713 HC_gene_3211 9 + 717293 718711 -chrVII 718842 720264 HC_gene_3212 37 + 718842 720235 -chrVII 720356 722098 HC_gene_3213 7 + 720356 721849 -chrVII 722118 724964 HC_gene_3214 41 + 722118 724868 -chrVII 725865 726488 LC_gene_3215 1 + 725865 726488 -chrVII 726949 728250 HC_gene_3216 5316 + 726949 727904 -chrVII 729964 730653 HC_gene_3217 4 + 729964 730631 -chrVII 730770 731069 MC_gene_3218 1 + 730770 731034 -chrVII 731335 733615 HC_gene_3219 3 + 731335 733169 -chrVII 733637 735479 HC_gene_3220 32 + 733637 735443 -chrVII 736345 736478 MC_gene_3221 1 + 736345 736478 -chrVII 736348 736589 MC_gene_3222 1 + 736348 736589 -chrVII 736604 737124 LC_gene_3223 1 + 736604 737124 -chrVII 738468 739062 HC_gene_3224 17 + 738468 738957 -chrVII 739415 741967 HC_gene_3225 644 + 739415 741875 -chrVII 742253 745592 HC_gene_3226 22 + 742253 745587 -chrVII 745720 748034 HC_gene_3227 17 + 745720 747954 -chrVII 750363 752542 HC_gene_3228 58 + 750363 752529 -chrVII 754208 755354 HC_gene_3229 25 + 754208 755354 -chrVII 756924 757727 HC_gene_3230 16 + 756924 757727 -chrVII 757616 761307 HC_gene_3231 4 + 757616 761307 -chrVII 761337 763829 HC_gene_3232 742 + 761337 763743 -chrVII 765010 765877 MC_gene_3233 1 + 765010 765877 -chrVII 767015 767276 LC_gene_3234 1 + 767015 767276 -chrVII 767482 770437 HC_gene_3235 5 + 767482 770375 -chrVII 770523 773798 HC_gene_3236 56 + 770523 773784 -chrVII 774786 775394 HC_gene_3237 2 + 774786 775211 -chrVII 775414 777931 HC_gene_3238 20 + 775414 777916 -chrVII 778275 779246 HC_gene_3239 10 + 778275 779246 -chrVII 780177 781462 HC_gene_3240 6 + 780177 781462 -chrVII 781711 784103 HC_gene_3241 91 + 781711 783990 -chrVII 784204 785117 HC_gene_3242 2 + 784204 785117 -chrVII 785300 786367 HC_gene_3243 4 + 785300 786056 -chrVII 788647 790479 HC_gene_3244 62 + 788647 790479 -chrVII 793292 794362 MC_gene_3245 1 + 793292 794355 -chrVII 795872 796874 HC_gene_3246 15 + 795872 796864 -chrVII 798500 800361 HC_gene_3247 1398 + 798500 800199 -chrVII 800410 802125 HC_gene_3248 37 + 800410 801998 -chrVII 802185 805374 HC_gene_3249 143 + 802185 805238 -chrVII 809988 810737 HC_gene_3250 95 + 809988 810723 -chrVII 811139 811771 MC_gene_3251 1 + 811139 811771 -chrVII 822536 823254 LC_gene_3252 1 + 822536 823254 -chrVII 823995 827426 HC_gene_3253 251 + 823995 827339 -chrVII 827493 828696 HC_gene_3254 62 + 827493 828648 -chrVII 829060 830381 HC_gene_3255 63 + 829060 830315 -chrVII 830433 832284 HC_gene_3256 6 + 830433 832281 -chrVII 832390 833528 HC_gene_3257 545 + 832390 833423 -chrVII 834102 834571 HC_gene_3258 7 + 834102 834571 -chrVII 835579 835952 LC_gene_3259 1 + 835579 835952 -chrVII 837084 840834 HC_gene_3260 5 + 837084 840834 -chrVII 840178 841052 HC_gene_3261 17 + 840178 840989 -chrVII 843811 845405 HC_gene_3262 77 + 843811 845235 -chrVII 845661 845903 MC_gene_3263 1 + 845661 845869 -chrVII 846513 846892 HC_gene_3264 22 + 846513 846892 -chrVII 848583 849472 MC_gene_3265 1 + 848583 849424 -chrVII 849595 850674 LC_gene_3266 1 + 849595 850674 -chrVII 850795 851033 HC_gene_3267 4 + 850795 851033 -chrVII 851016 853268 LC_gene_3268 1 + 851016 853268 -chrVII 853768 854409 LC_gene_3269 1 + 853768 854409 -chrVII 858265 858961 HC_gene_3270 377 + 858265 858787 -chrVII 859561 859908 MC_gene_3271 1 + 859561 859908 -chrVII 865926 866342 MC_gene_3272 1 + 865926 866342 -chrVII 866689 867198 LC_gene_3273 1 + 866689 867198 -chrVII 867745 870174 HC_gene_3274 149 + 867745 870166 -chrVII 871806 872800 LC_gene_3275 1 + 871806 872800 -chrVII 875316 876264 HC_gene_3276 11 + 875316 876264 -chrVII 878932 879442 HC_gene_3277 2 + 878932 879442 -chrVII 879459 879700 LC_gene_3278 1 + 879459 879658 -chrVII 879740 882417 HC_gene_3279 1 + 879740 882417 -chrVII 880281 882570 HC_gene_3280 115 + 880281 882569 -chrVII 886051 888428 LC_gene_3281 1 + 886051 888428 -chrVII 888760 890034 HC_gene_3282 95 + 888760 890034 -chrVII 892482 893536 MC_gene_3283 1 + 892482 893536 -chrVII 894650 897434 HC_gene_3284 15 + 894650 897244 -chrVII 897459 900100 HC_gene_3285 15 + 897459 900100 -chrVII 902532 903606 HC_gene_3286 2 + 902532 903606 -chrVII 905072 907077 HC_gene_3287 49 + 905072 905874 -chrVII 907097 909045 HC_gene_3288 140 + 907097 908880 -chrVII 909085 910247 HC_gene_3289 66 + 909085 910214 -chrVII 910409 910950 HC_gene_3290 121 + 910409 910825 -chrVII 911836 913086 HC_gene_3291 151 + 911836 912862 -chrVII 914111 914814 LC_gene_3292 1 + 914111 914814 -chrVII 915180 917014 HC_gene_3293 102 + 915180 916901 -chrVII 917034 918498 HC_gene_3294 1 + 917034 918498 -chrVII 917086 919550 HC_gene_3295 1 + 917086 919550 -chrVII 920552 922071 HC_gene_3296 2123 + 920552 922056 -chrVII 922125 922831 HC_gene_3297 205 + 922125 922643 -chrVII 924643 930934 MC_gene_3298 1 + 924643 930864 -chrVII 931233 931990 MC_gene_3299 1 + 931233 931984 -chrVII 932240 936134 HC_gene_3300 27 + 932240 936002 -chrVII 937106 938286 HC_gene_3301 4 + 937106 938286 -chrVII 939660 940999 HC_gene_3302 85 + 939660 940898 -chrVII 945046 947156 MC_gene_3303 2 + 945046 947156 -chrVII 947339 949333 HC_gene_3304 31 + 947339 949306 -chrVII 951544 952424 HC_gene_3305 75 + 951544 952406 -chrVII 953750 954766 HC_gene_3306 167 + 953750 954703 -chrVII 957148 957942 LC_gene_3307 1 + 957148 957942 -chrVII 958109 959083 LC_gene_3308 1 + 958109 958800 -chrVII 959882 961635 HC_gene_3309 461 + 959882 961362 -chrVII 962377 962733 LC_gene_3310 1 + 962377 962733 -chrVII 963837 964583 LC_gene_3311 1 + 963837 964583 -chrVII 965258 965742 MC_gene_3312 1 + 965258 965742 -chrVII 968827 969344 HC_gene_3313 18 + 968827 969190 -chrVII 970324 970732 HC_gene_3314 12 + 970324 970732 -chrVII 974229 975167 HC_gene_3315 68 + 974229 974908 -chrVII 977239 977818 HC_gene_3316 25 + 977239 977818 -chrVII 978369 979191 LC_gene_3317 1 + 978369 979191 -chrVII 984415 984716 MC_gene_3318 1 + 984415 984695 -chrVII 984864 985815 HC_gene_3319 24 + 984864 985777 -chrVII 985936 986838 MC_gene_3320 2 + 985936 986838 -chrVII 987236 987918 LC_gene_3321 1 + 987236 987918 -chrVII 987923 989916 HC_gene_3322 4 + 987923 989916 -chrVII 990178 990834 MC_gene_3323 1 + 990178 990834 -chrVII 994303 994997 HC_gene_3324 5 + 994303 994997 -chrVII 995609 996775 HC_gene_3325 65 + 995609 996698 -chrVII 996819 998573 HC_gene_3326 41 + 996819 998388 -chrVII 1000666 1000828 MC_gene_3327 1 + 1000666 1000820 -chrVII 1000888 1002510 HC_gene_3328 1353 + 1000888 1002384 -chrVII 1002548 1003011 MC_gene_3329 1 + 1002548 1003011 -chrVII 1004428 1006216 HC_gene_3330 6 + 1004428 1006216 -chrVII 1008228 1008959 LC_gene_3331 1 + 1008228 1008959 -chrVII 1011585 1011785 MC_gene_3332 1 + 1011585 1011785 -chrVII 1011936 1012320 HC_gene_3333 4 + 1011936 1012320 -chrVII 1012285 1014448 HC_gene_3334 230 + 1012285 1014325 -chrVII 1017943 1019553 LC_gene_3335 1 + 1017943 1019553 -chrVII 1022590 1024993 HC_gene_3336 19 + 1022590 1024993 -chrVII 1026134 1026759 MC_gene_3337 1 + 1026134 1026535 -chrVII 1026877 1031611 HC_gene_3338 29 + 1026877 1031584 -chrVII 1031766 1037828 HC_gene_3339 2 + 1031766 1037824 -chrVII 1038838 1039251 LC_gene_3340 1 + 1038838 1039223 -chrVII 1043254 1043878 HC_gene_3341 279 + 1043254 1043846 -chrVII 1045768 1046267 LC_gene_3342 1 + 1045768 1046267 -chrVII 1046719 1048626 HC_gene_3343 7 + 1046719 1048623 -chrVII 1050237 1050792 LC_gene_3344 1 + 1050237 1050792 -chrVII 1052000 1057713 HC_gene_3345 110 + 1052000 1057713 -chrVII 1059040 1059543 HC_gene_3346 14 + 1059040 1059543 -chrVII 1060294 1061711 HC_gene_3347 7 + 1060294 1061711 -chrVII 1061906 1062211 LC_gene_3348 1 + 1061906 1062211 -chrVII 1063714 1064197 LC_gene_3349 1 + 1063714 1064197 -chrVII 1065106 1065498 MC_gene_3350 1 + 1065106 1065498 -chrVII 1065473 1065901 MC_gene_3351 1 + 1065473 1065585 -chrVII 1066355 1066736 MC_gene_3352 1 + 1066355 1066736 -chrVII 1070221 1072208 HC_gene_3353 1 + 1070221 1072192 -chrVII 1073241 1073898 MC_gene_3354 1 + 1073241 1073898 -chrVII 1074280 1075835 LC_gene_3355 1 + 1074280 1075835 -chrVII 1076569 1078483 HC_gene_3356 1 + 1076569 1078483 -chrVII 1078609 1079829 HC_gene_3357 14 + 1078609 1079829 -chrVII 1081213 1083618 MC_gene_3358 1 + 1081213 1083618 -chrVII 1082921 1083758 MC_gene_3359 1 + 1082921 1083758 -chrVII 9429 10188 LC_gene_3360 1 - 9429 10188 -chrVII 11863 14463 HC_gene_3361 50 - 11863 14463 -chrVII 16389 16782 MC_gene_3362 1 - 16389 16782 -chrVII 17170 17692 HC_gene_3363 13 - 17266 17692 -chrVII 20078 23082 HC_gene_3364 1 - 20078 23082 -chrVII 25456 27523 MC_gene_3365 8 - 25458 27523 -chrVII 27633 30239 HC_gene_3366 6 - 27662 30239 -chrVII 31816 32861 HC_gene_3367 1 - 31816 32861 -chrVII 33065 35108 HC_gene_3368 6 - 33065 35108 -chrVII 35201 35979 LC_gene_3369 1 - 35313 35979 -chrVII 36205 36678 LC_gene_3370 1 - 36287 36678 -chrVII 37324 38821 HC_gene_3371 65 - 37495 38821 -chrVII 43074 44350 LC_gene_3372 1 - 43155 44350 -chrVII 44413 45237 HC_gene_3373 254 - 44441 45237 -chrVII 48482 49314 HC_gene_3374 4 - 48482 49314 -chrVII 50232 50627 LC_gene_3375 1 - 50232 50627 -chrVII 52384 53605 HC_gene_3376 51 - 52407 53605 -chrVII 53633 55810 HC_gene_3377 9 - 53714 55810 -chrVII 61569 62224 LC_gene_3378 1 - 61569 62224 -chrVII 62778 63641 HC_gene_3379 289 - 62974 63641 -chrVII 64238 67189 HC_gene_3380 6 - 64238 67189 -chrVII 68041 69397 LC_gene_3381 1 - 68041 69397 -chrVII 72170 73193 HC_gene_3382 182 - 72170 73193 -chrVII 73698 74242 HC_gene_3383 10 - 73712 74242 -chrVII 74262 74752 HC_gene_3384 1 - 74262 74752 -chrVII 77886 80378 HC_gene_3385 67 - 77904 80378 -chrVII 78934 80509 HC_gene_3386 7 - 78934 80509 -chrVII 80499 81256 HC_gene_3387 39 - 80499 81256 -chrVII 81285 82304 HC_gene_3388 164 - 81344 82304 -chrVII 82687 84283 HC_gene_3389 31 - 82788 84283 -chrVII 89835 91265 HC_gene_3390 91 - 89838 91265 -chrVII 92363 93038 LC_gene_3391 1 - 92363 93038 -chrVII 94163 95246 HC_gene_3392 2 - 94435 95246 -chrVII 95563 95772 MC_gene_3393 1 - 95563 95772 -chrVII 96635 97397 MC_gene_3394 1 - 96641 97397 -chrVII 102048 103007 HC_gene_3395 66 - 102048 103007 -chrVII 102112 107577 HC_gene_3396 34 - 102112 107577 -chrVII 108136 109886 LC_gene_3397 1 - 108136 109886 -chrVII 109878 110333 MC_gene_3398 1 - 109878 110333 -chrVII 110476 110698 MC_gene_3399 1 - 110483 110698 -chrVII 111216 112109 HC_gene_3400 32 - 111216 112109 -chrVII 112291 114729 HC_gene_3401 77 - 112403 114729 -chrVII 117594 120960 HC_gene_3402 41 - 117594 120960 -chrVII 122333 123330 HC_gene_3403 598 - 122585 123330 -chrVII 123510 124261 MC_gene_3404 1 - 123510 124261 -chrVII 129484 130837 LC_gene_3405 1 - 129484 130837 -chrVII 130837 131291 MC_gene_3406 1 - 131175 131291 -chrVII 139514 140207 HC_gene_3407 188 - 139559 140207 -chrVII 140244 141779 HC_gene_3408 11 - 140244 141779 -chrVII 141827 144136 HC_gene_3409 21 - 141869 144136 -chrVII 143982 144509 HC_gene_3410 1 - 143982 144509 -chrVII 144742 145168 LC_gene_3411 1 - 144742 145168 -chrVII 145313 147903 HC_gene_3412 54 - 145343 147903 -chrVII 148001 148980 HC_gene_3413 6753 - 148157 148980 -chrVII 149246 150635 HC_gene_3414 343 - 149416 150635 -chrVII 150863 152785 HC_gene_3415 58 - 150991 152785 -chrVII 153078 154316 HC_gene_3416 23 - 153078 154316 -chrVII 154500 156076 HC_gene_3417 24 - 154500 156076 -chrVII 156086 157207 HC_gene_3418 1 - 156086 157207 -chrVII 157222 157631 MC_gene_3419 1 - 157222 157631 -chrVII 159026 159705 MC_gene_3420 1 - 159026 159705 -chrVII 163319 165171 HC_gene_3421 25 - 163319 165171 -chrVII 165324 166542 HC_gene_3422 14 - 165406 166542 -chrVII 166836 167508 HC_gene_3423 4 - 166848 167508 -chrVII 171260 174359 HC_gene_3424 23 - 171305 174359 -chrVII 174945 180446 HC_gene_3425 160 - 174945 180446 -chrVII 184072 185607 LC_gene_3426 1 - 184072 185607 -chrVII 187330 189199 HC_gene_3427 58 - 187453 189199 -chrVII 189219 190903 HC_gene_3428 5 - 190453 190903 -chrVII 191440 193312 HC_gene_3429 52 - 191796 193312 -chrVII 193558 197908 HC_gene_3430 7 - 193568 197908 -chrVII 198939 200252 HC_gene_3431 133 - 199057 200252 -chrVII 200441 200829 LC_gene_3432 1 - 200441 200829 -chrVII 202310 203948 LC_gene_3433 1 - 202310 203948 -chrVII 205859 206063 MC_gene_3434 1 - 205859 206063 -chrVII 206294 206960 LC_gene_3435 1 - 206294 206960 -chrVII 208883 209365 LC_gene_3436 1 - 208883 209365 -chrVII 210380 213748 HC_gene_3437 2 - 210380 213748 -chrVII 215157 216101 HC_gene_3438 30 - 215157 216101 -chrVII 216834 217280 LC_gene_3439 1 - 216890 217280 -chrVII 220849 225929 HC_gene_3440 43 - 220933 225929 -chrVII 225828 226150 HC_gene_3441 19 - 225828 226150 -chrVII 227300 228347 HC_gene_3442 3666 - 227623 228347 -chrVII 232276 234534 HC_gene_3443 17 - 232285 234534 -chrVII 234564 235993 HC_gene_3444 19 - 234564 235993 -chrVII 236018 238165 HC_gene_3445 37 - 236018 238165 -chrVII 241046 245200 HC_gene_3446 25 - 241108 245200 -chrVII 251303 252242 LC_gene_3447 1 - 251303 252242 -chrVII 252683 253994 HC_gene_3448 25 - 252769 253994 -chrVII 255278 255980 LC_gene_3449 1 - 255278 255980 -chrVII 256542 257275 MC_gene_3450 1 - 256870 257275 -chrVII 260540 261773 MC_gene_3451 1 - 260540 261773 -chrVII 261825 265920 HC_gene_3452 1 - 261825 265920 -chrVII 266062 266282 MC_gene_3453 1 - 266062 266282 -chrVII 267505 269133 HC_gene_3454 40 - 267520 269133 -chrVII 269100 270145 HC_gene_3455 17 - 269100 270145 -chrVII 270226 271117 HC_gene_3456 92 - 270244 271117 -chrVII 272190 272897 HC_gene_3457 5 - 272201 272897 -chrVII 274607 276750 HC_gene_3458 20 - 274655 276750 -chrVII 278157 280539 HC_gene_3459 3 - 278549 280539 -chrVII 280596 281137 HC_gene_3460 36 - 280596 281137 -chrVII 281330 283994 HC_gene_3461 72 - 281389 283994 -chrVII 286085 287104 HC_gene_3462 9 - 286085 287104 -chrVII 287221 287444 LC_gene_3463 1 - 287249 287444 -chrVII 288333 289291 LC_gene_3464 1 - 288333 289291 -chrVII 292758 293224 MC_gene_3465 2 - 292813 293224 -chrVII 297961 299764 HC_gene_3466 62 - 298044 299764 -chrVII 300499 301537 MC_gene_3467 1 - 300499 301537 -chrVII 301439 304109 HC_gene_3468 97 - 301439 304109 -chrVII 304187 306333 HC_gene_3469 23 - 304234 306333 -chrVII 308574 310518 HC_gene_3470 21 - 308574 310518 -chrVII 312070 313052 HC_gene_3471 2 - 312070 313052 -chrVII 314201 314406 MC_gene_3472 1 - 314201 314406 -chrVII 316151 316515 LC_gene_3473 1 - 316151 316515 -chrVII 318961 319540 HC_gene_3474 520 - 318961 319540 -chrVII 320387 320932 MC_gene_3475 1 - 320387 320932 -chrVII 323028 324514 HC_gene_3476 9 - 323205 324514 -chrVII 325532 326739 MC_gene_3477 1 - 325562 326739 -chrVII 328700 330657 HC_gene_3478 44 - 328779 330657 -chrVII 330883 332659 HC_gene_3479 9 - 330897 332659 -chrVII 332991 334655 HC_gene_3480 1 - 333033 334655 -chrVII 337271 337610 MC_gene_3481 1 - 337281 337610 -chrVII 341756 343111 HC_gene_3482 38 - 341816 343111 -chrVII 343075 345183 LC_gene_3483 1 - 343075 345183 -chrVII 345200 345732 MC_gene_3484 1 - 345200 345732 -chrVII 346128 346932 HC_gene_3485 114 - 346198 346932 -chrVII 348780 349395 MC_gene_3486 1 - 348780 349395 -chrVII 350387 352351 HC_gene_3487 30 - 350387 352351 -chrVII 352357 352757 MC_gene_3488 1 - 352357 352757 -chrVII 354363 355539 HC_gene_3489 15 - 354386 355539 -chrVII 357362 357882 MC_gene_3490 1 - 357362 357882 -chrVII 358544 358976 LC_gene_3491 1 - 358544 358976 -chrVII 359061 359852 HC_gene_3492 5 - 359164 359852 -chrVII 359872 361938 HC_gene_3493 218 - 360081 361938 -chrVII 361991 364039 HC_gene_3494 35 - 362143 364039 -chrVII 364129 366019 HC_gene_3495 3130 - 364224 366019 -chrVII 366083 366639 HC_gene_3496 95 - 366301 366639 -chrVII 366576 368255 HC_gene_3497 7 - 366576 368255 -chrVII 370462 371219 HC_gene_3498 44 - 370614 371219 -chrVII 373928 374853 HC_gene_3499 167 - 374037 374853 -chrVII 375701 377199 MC_gene_3500 1 - 375701 377199 -chrVII 379537 381315 HC_gene_3501 36 - 379701 381315 -chrVII 381348 383216 HC_gene_3502 15 - 381460 383216 -chrVII 383472 384540 MC_gene_3503 1 - 383472 384540 -chrVII 388758 389785 HC_gene_3504 53 - 388758 389785 -chrVII 391411 391922 LC_gene_3505 1 - 391411 391922 -chrVII 393265 393712 HC_gene_3506 4 - 393298 393712 -chrVII 394713 395803 HC_gene_3507 22 - 394752 395803 -chrVII 395953 397794 HC_gene_3508 67 - 395964 397794 -chrVII 397948 398528 LC_gene_3509 1 - 397948 398528 -chrVII 400414 401380 HC_gene_3510 513 - 400530 401380 -chrVII 401856 402346 MC_gene_3511 1 - 401856 402346 -chrVII 402346 404302 HC_gene_3512 12 - 402349 404302 -chrVII 404371 404518 MC_gene_3513 1 - 404371 404518 -chrVII 406563 409774 HC_gene_3514 48 - 406689 409774 -chrVII 409855 411315 HC_gene_3515 357 - 409971 411315 -chrVII 411445 412112 MC_gene_3516 1 - 411807 412112 -chrVII 412794 413875 LC_gene_3517 1 - 412794 413875 -chrVII 415691 417262 HC_gene_3518 82 - 415866 417262 -chrVII 417367 418637 LC_gene_3519 1 - 417367 418637 -chrVII 418746 420632 HC_gene_3520 216 - 418754 420632 -chrVII 421243 421794 LC_gene_3521 1 - 421243 421794 -chrVII 423243 423830 MC_gene_3522 1 - 423347 423830 -chrVII 425015 426850 HC_gene_3523 52 - 425015 426850 -chrVII 427106 428023 HC_gene_3524 861 - 427154 428023 -chrVII 428042 428345 MC_gene_3525 1 - 428042 428345 -chrVII 431260 432175 MC_gene_3526 1 - 431317 432175 -chrVII 431370 433102 MC_gene_3527 3 - 431370 433102 -chrVII 436088 436888 HC_gene_3528 13 - 436367 436888 -chrVII 437038 438443 HC_gene_3529 2988 - 437230 438443 -chrVII 439460 439876 MC_gene_3530 1 - 439661 439876 -chrVII 440832 443307 HC_gene_3531 297 - 440875 443307 -chrVII 442900 443538 HC_gene_3532 1 - 442900 443538 -chrVII 443545 446175 HC_gene_3533 76 - 443545 446175 -chrVII 446216 448554 HC_gene_3534 265 - 446328 448554 -chrVII 448602 449986 HC_gene_3535 35 - 448677 449986 -chrVII 450058 452143 HC_gene_3536 39 - 450067 452143 -chrVII 454524 455839 MC_gene_3537 1 - 454524 455839 -chrVII 456934 457935 HC_gene_3538 165 - 457073 457935 -chrVII 458848 459700 HC_gene_3539 38 - 458848 459700 -chrVII 468982 472429 HC_gene_3540 15 - 468992 472429 -chrVII 472778 475284 HC_gene_3541 640 - 472778 475284 -chrVII 475445 475708 MC_gene_3542 1 - 475455 475708 -chrVII 475529 476012 MC_gene_3543 1 - 475529 476012 -chrVII 476032 478728 HC_gene_3544 210 - 476168 478728 -chrVII 479015 482903 HC_gene_3545 8406 - 479243 482903 -chrVII 482847 483880 HC_gene_3546 3 - 482847 483880 -chrVII 483886 484828 MC_gene_3547 1 - 483886 484828 -chrVII 489387 490562 HC_gene_3548 30 - 489387 490562 -chrVII 490599 491961 HC_gene_3549 14 - 490684 491961 -chrVII 492214 494278 HC_gene_3550 36 - 492218 494278 -chrVII 495241 496557 HC_gene_3551 145 - 495253 496557 -chrVII 497050 498053 HC_gene_3552 126 - 497053 498053 -chrVII 498116 499916 HC_gene_3553 23 - 498183 499916 -chrVII 502241 502710 HC_gene_3554 2 - 502325 502710 -chrVII 504481 505890 HC_gene_3555 97 - 504548 505890 -chrVII 506086 506713 MC_gene_3556 1 - 506403 506713 -chrVII 507903 508546 HC_gene_3557 607 - 507947 508546 -chrVII 508839 511046 HC_gene_3558 65 - 508906 511046 -chrVII 511928 512438 MC_gene_3559 1 - 511935 512438 -chrVII 512438 512908 HC_gene_3560 6 - 512531 512908 -chrVII 513484 514344 LC_gene_3561 1 - 513484 514344 -chrVII 515089 515785 LC_gene_3562 1 - 515089 515785 -chrVII 520704 522096 HC_gene_3563 24 - 520882 522096 -chrVII 522761 525553 HC_gene_3564 16 - 522833 525553 -chrVII 526149 527386 HC_gene_3565 543 - 526630 527386 -chrVII 528019 528484 MC_gene_3566 1 - 528025 528484 -chrVII 528477 530056 LC_gene_3567 1 - 528477 530056 -chrVII 531051 531443 LC_gene_3568 1 - 531051 531443 -chrVII 531673 532600 HC_gene_3569 177 - 531799 532600 -chrVII 533626 534829 HC_gene_3570 4912 - 534067 534829 -chrVII 534850 535809 HC_gene_3571 1 - 535009 535809 -chrVII 543332 544350 HC_gene_3572 2 - 543387 544350 -chrVII 544285 544467 HC_gene_3573 3 - 544285 544467 -chrVII 545303 546172 HC_gene_3574 107 - 545431 546172 -chrVII 546563 547122 MC_gene_3575 1 - 546563 547122 -chrVII 553753 554715 HC_gene_3576 33 - 553926 554715 -chrVII 553936 555062 HC_gene_3577 86 - 553936 555062 -chrVII 556551 556857 LC_gene_3578 1 - 556551 556857 -chrVII 556857 557513 HC_gene_3579 971 - 556902 557513 -chrVII 557457 559027 HC_gene_3580 44 - 557457 559027 -chrVII 559209 560049 HC_gene_3581 1365 - 559262 560049 -chrVII 559472 561335 HC_gene_3582 3 - 559472 561335 -chrVII 561493 561692 MC_gene_3583 1 - 561493 561692 -chrVII 567864 568541 MC_gene_3584 1 - 567864 568541 -chrVII 568790 574461 MC_gene_3585 1 - 568790 574461 -chrVII 574692 575251 LC_gene_3586 1 - 574702 575251 -chrVII 575597 576548 HC_gene_3587 1 - 575597 576548 -chrVII 576989 579274 HC_gene_3588 3 - 577024 579274 -chrVII 579408 579879 LC_gene_3589 1 - 579408 579879 -chrVII 580286 581607 HC_gene_3590 47 - 580286 581607 -chrVII 582668 584146 HC_gene_3591 104 - 582722 584146 -chrVII 586299 589505 HC_gene_3592 8 - 586299 589505 -chrVII 591151 591883 HC_gene_3593 11 - 591153 591883 -chrVII 591714 592520 HC_gene_3594 24 - 591714 592520 -chrVII 593485 594155 MC_gene_3595 1 - 593485 594155 -chrVII 594925 595941 HC_gene_3596 9 - 594925 595941 -chrVII 601153 601339 MC_gene_3597 1 - 601153 601339 -chrVII 604213 605580 HC_gene_3598 24 - 604432 605580 -chrVII 608667 609528 MC_gene_3599 1 - 608810 609528 -chrVII 610280 611431 LC_gene_3600 1 - 610280 611431 -chrVII 611672 615993 HC_gene_3601 206 - 611783 615993 -chrVII 616026 617314 HC_gene_3602 28 - 616026 617314 -chrVII 617370 617842 HC_gene_3603 224 - 617394 617842 -chrVII 617900 619877 HC_gene_3604 20 - 617979 619877 -chrVII 620755 621803 HC_gene_3605 2 - 620755 621803 -chrVII 622258 623551 MC_gene_3606 1 - 622258 623551 -chrVII 624923 627121 MC_gene_3607 1 - 624923 627121 -chrVII 627260 627533 HC_gene_3608 3 - 627260 627533 -chrVII 631285 634121 HC_gene_3609 4 - 631287 634121 -chrVII 634521 635062 LC_gene_3610 1 - 634521 635062 -chrVII 635526 636916 HC_gene_3611 12 - 635548 636916 -chrVII 636978 637629 HC_gene_3612 81 - 636984 637629 -chrVII 637665 639521 HC_gene_3613 15 - 637665 639521 -chrVII 639693 640405 HC_gene_3614 193 - 639696 640405 -chrVII 641961 643810 HC_gene_3615 108 - 641961 643810 -chrVII 644582 646848 HC_gene_3616 65 - 644735 646848 -chrVII 646978 648082 HC_gene_3617 43 - 647045 648082 -chrVII 648119 649014 HC_gene_3618 2057 - 648294 649014 -chrVII 649034 650915 HC_gene_3619 686 - 649314 650915 -chrVII 651227 653152 LC_gene_3620 1 - 651227 653152 -chrVII 653460 654036 HC_gene_3621 1 - 653460 654036 -chrVII 655946 656462 MC_gene_3622 1 - 656261 656462 -chrVII 656318 656925 MC_gene_3623 1 - 656318 656925 -chrVII 666838 667234 MC_gene_3624 1 - 666838 667234 -chrVII 666930 667805 MC_gene_3625 1 - 666930 667805 -chrVII 669615 670564 HC_gene_3626 3 - 669981 670564 -chrVII 671369 671866 LC_gene_3627 1 - 671369 671866 -chrVII 671866 672384 MC_gene_3628 1 - 671908 672384 -chrVII 675408 676391 HC_gene_3629 131 - 675501 676391 -chrVII 675570 677035 HC_gene_3630 1 - 675570 677035 -chrVII 677237 678450 MC_gene_3631 1 - 677565 678450 -chrVII 682337 687689 HC_gene_3632 2 - 682396 687689 -chrVII 688547 689941 LC_gene_3633 1 - 688547 689941 -chrVII 691643 693131 LC_gene_3634 1 - 691643 693131 -chrVII 694276 695160 HC_gene_3635 167 - 694407 695160 -chrVII 697292 698399 HC_gene_3636 21 - 697303 698399 -chrVII 698632 699844 HC_gene_3637 539 - 698883 699844 -chrVII 701118 701820 MC_gene_3638 2 - 701146 701820 -chrVII 701820 702707 MC_gene_3639 1 - 702267 702707 -chrVII 705196 706581 HC_gene_3640 4 - 705243 706581 -chrVII 713199 713485 HC_gene_3641 1 - 713277 713485 -chrVII 713543 715013 MC_gene_3642 1 - 713552 715013 -chrVII 715034 715599 HC_gene_3643 4 - 715041 715599 -chrVII 718265 719131 MC_gene_3644 1 - 718489 719131 -chrVII 719596 720134 MC_gene_3645 1 - 719596 720134 -chrVII 724703 726489 HC_gene_3646 25 - 724833 726489 -chrVII 726513 727896 LC_gene_3647 1 - 726513 727896 -chrVII 727896 729761 HC_gene_3648 106 - 727930 729761 -chrVII 729836 730855 HC_gene_3649 37 - 729836 730855 -chrVII 731253 732983 HC_gene_3650 6 - 731307 732983 -chrVII 732942 733256 HC_gene_3651 2 - 732942 733256 -chrVII 734595 735845 MC_gene_3652 2 - 734595 735845 -chrVII 736429 738230 HC_gene_3653 36 - 736512 738230 -chrVII 738534 738977 MC_gene_3654 1 - 738534 738977 -chrVII 739339 739668 LC_gene_3655 1 - 739339 739668 -chrVII 741687 742079 HC_gene_3656 30 - 741687 742079 -chrVII 745313 745677 LC_gene_3657 1 - 745313 745677 -chrVII 747632 750130 HC_gene_3658 39 - 747730 750130 -chrVII 751119 753890 HC_gene_3659 81 - 751217 753890 -chrVII 755206 756493 HC_gene_3660 297 - 755328 756493 -chrVII 756589 757395 HC_gene_3661 5 - 756721 757395 -chrVII 759482 760282 LC_gene_3662 1 - 759482 760282 -chrVII 760920 762038 LC_gene_3663 1 - 760996 762038 -chrVII 763304 765964 HC_gene_3664 88 - 763304 765964 -chrVII 765964 767166 LC_gene_3665 1 - 765964 767166 -chrVII 771384 772048 MC_gene_3666 1 - 771384 772048 -chrVII 774398 774762 MC_gene_3667 1 - 774398 774762 -chrVII 777702 778035 MC_gene_3668 1 - 777702 778035 -chrVII 778094 778694 LC_gene_3669 1 - 778094 778694 -chrVII 778904 779494 LC_gene_3670 1 - 778904 779494 -chrVII 780235 781413 LC_gene_3671 1 - 780235 781413 -chrVII 783764 785365 HC_gene_3672 107 - 783858 785365 -chrVII 785545 786984 HC_gene_3673 79 - 785690 786984 -chrVII 787028 788750 HC_gene_3674 2402 - 787225 788750 -chrVII 790187 793094 HC_gene_3675 27 - 790325 793094 -chrVII 794482 795654 HC_gene_3676 87 - 794581 795654 -chrVII 796549 798196 HC_gene_3677 7 - 796553 798196 -chrVII 799626 800031 LC_gene_3678 1 - 799626 800031 -chrVII 800095 800457 MC_gene_3679 1 - 800100 800457 -chrVII 800534 801881 HC_gene_3680 11 - 800534 801881 -chrVII 804833 806074 HC_gene_3681 75 - 805032 806074 -chrVII 806143 807795 HC_gene_3682 480 - 806252 807795 -chrVII 808286 809503 HC_gene_3683 409 - 808358 809503 -chrVII 810468 810896 HC_gene_3684 7 - 810627 810896 -chrVII 817443 822024 LC_gene_3685 1 - 817443 822024 -chrVII 823323 823698 LC_gene_3686 1 - 823323 823698 -chrVII 827008 828128 LC_gene_3687 1 - 827008 828128 -chrVII 828574 828789 MC_gene_3688 1 - 828574 828789 -chrVII 829468 830177 LC_gene_3689 1 - 829468 830177 -chrVII 831732 832178 HC_gene_3690 13 - 831732 832178 -chrVII 833208 834524 HC_gene_3691 29 - 833267 834524 -chrVII 834567 835930 HC_gene_3692 29 - 834587 835930 -chrVII 835950 836765 HC_gene_3693 433 - 836017 836765 -chrVII 838487 839187 MC_gene_3694 1 - 838487 839187 -chrVII 839548 839976 MC_gene_3695 1 - 839548 839976 -chrVII 839719 840381 MC_gene_3696 1 - 839719 840381 -chrVII 840644 842575 HC_gene_3697 7 - 840713 842575 -chrVII 842614 843628 HC_gene_3698 165 - 842701 843628 -chrVII 845706 846354 HC_gene_3699 95 - 845767 846354 -chrVII 846515 848451 HC_gene_3700 616 - 846751 848451 -chrVII 848612 850499 HC_gene_3701 7 - 848612 850499 -chrVII 850883 853428 HC_gene_3702 135 - 850909 853428 -chrVII 853501 854923 HC_gene_3703 23 - 853582 854923 -chrVII 854975 856511 HC_gene_3704 1098 - 855139 856511 -chrVII 857877 859549 HC_gene_3705 435 - 857877 859549 -chrVII 859816 862527 HC_gene_3706 45 - 859817 862527 -chrVII 863457 866128 MC_gene_3707 3 - 863499 866128 -chrVII 866189 867553 HC_gene_3708 624 - 866214 867553 -chrVII 869899 871502 HC_gene_3709 140 - 870085 871502 -chrVII 871893 874551 MC_gene_3710 1 - 871893 874551 -chrVII 874551 875149 HC_gene_3711 2 - 874672 875149 -chrVII 875492 876255 LC_gene_3712 1 - 875492 876255 -chrVII 876461 878271 HC_gene_3713 535 - 876546 878271 -chrVII 879200 879912 HC_gene_3714 10 - 879561 879912 -chrVII 882199 883849 HC_gene_3715 29974 - 882712 883849 -chrVII 884234 885831 HC_gene_3716 119 - 884386 885831 -chrVII 885946 887847 HC_gene_3717 11 - 885967 887847 -chrVII 889607 892227 HC_gene_3718 22 - 889619 892227 -chrVII 892316 894338 HC_gene_3719 17 - 892429 894338 -chrVII 897678 898040 MC_gene_3720 1 - 897678 898040 -chrVII 899593 902329 HC_gene_3721 38 - 899652 902329 -chrVII 902410 903135 HC_gene_3722 32 - 902467 903135 -chrVII 903324 903679 HC_gene_3723 10 - 903324 903679 -chrVII 903338 904763 HC_gene_3724 29 - 903338 904763 -chrVII 904869 905450 HC_gene_3725 50 - 904925 905450 -chrVII 908164 908777 MC_gene_3726 1 - 908164 908777 -chrVII 908803 909171 MC_gene_3727 1 - 908803 909171 -chrVII 909036 910234 MC_gene_3728 1 - 909036 910234 -chrVII 910510 911659 HC_gene_3729 194 - 910730 911659 -chrVII 912378 913281 HC_gene_3730 2056 - 912828 913281 -chrVII 913300 914849 HC_gene_3731 118 - 913300 914849 -chrVII 918399 919499 HC_gene_3732 1 - 918399 919499 -chrVII 922296 924490 HC_gene_3733 16 - 922375 924490 -chrVII 930781 931005 LC_gene_3734 1 - 930781 931005 -chrVII 931072 932022 MC_gene_3735 1 - 931151 932022 -chrVII 935773 936910 HC_gene_3736 119 - 935791 936910 -chrVII 937047 939080 HC_gene_3737 12 - 937047 939080 -chrVII 939101 939672 HC_gene_3738 3 - 939347 939672 -chrVII 940672 942265 HC_gene_3739 17 - 940784 942265 -chrVII 942295 944866 HC_gene_3740 4 - 942295 944866 -chrVII 949044 951205 HC_gene_3741 246 - 949174 951205 -chrVII 951242 951764 MC_gene_3742 1 - 951242 951764 -chrVII 952129 953539 HC_gene_3743 448 - 952319 953539 -chrVII 954597 958435 HC_gene_3744 3 - 954609 958435 -chrVII 958530 959376 HC_gene_3745 14 - 958617 959376 -chrVII 960982 962133 HC_gene_3746 193 - 961106 962133 -chrVII 962342 962740 MC_gene_3747 1 - 962342 962740 -chrVII 962816 965698 HC_gene_3748 35 - 962816 965698 -chrVII 965915 968655 HC_gene_3749 8 - 965915 968655 -chrVII 968915 969415 HC_gene_3750 43 - 969086 969415 -chrVII 970304 973968 HC_gene_3751 783 - 970537 973968 -chrVII 974026 974427 MC_gene_3752 1 - 974026 974427 -chrVII 974795 976698 HC_gene_3753 39 - 974800 976698 -chrVII 977918 982156 HC_gene_3754 244 - 977960 982156 -chrVII 982284 984287 HC_gene_3755 42 - 982314 984287 -chrVII 984573 985707 LC_gene_3756 1 - 984594 985707 -chrVII 987860 989674 HC_gene_3757 1 - 987860 989674 -chrVII 991070 993692 HC_gene_3758 75 - 991072 993692 -chrVII 993701 994114 HC_gene_3759 5 - 993701 994114 -chrVII 995152 995695 LC_gene_3760 1 - 995246 995695 -chrVII 995870 996633 MC_gene_3761 1 - 995884 996633 -chrVII 997473 999195 HC_gene_3762 438 - 997473 999195 -chrVII 999585 1000289 HC_gene_3763 23 - 999622 1000289 -chrVII 1002370 1004036 HC_gene_3764 61 - 1002464 1004036 -chrVII 1005936 1007416 HC_gene_3765 72 - 1006123 1007416 -chrVII 1007543 1010811 HC_gene_3766 20 - 1007562 1010811 -chrVII 1011585 1012288 MC_gene_3767 1 - 1011585 1012288 -chrVII 1012109 1012292 MC_gene_3768 1 - 1012109 1012292 -chrVII 1014104 1016787 HC_gene_3769 40 - 1014138 1016787 -chrVII 1016847 1017789 HC_gene_3770 89 - 1016864 1017789 -chrVII 1017884 1019250 HC_gene_3771 22 - 1017904 1019250 -chrVII 1019307 1022374 HC_gene_3772 274 - 1019307 1022374 -chrVII 1023934 1024415 MC_gene_3773 1 - 1023934 1024415 -chrVII 1024415 1027036 HC_gene_3774 228 - 1024444 1027036 -chrVII 1037475 1038642 HC_gene_3775 134 - 1037694 1038642 -chrVII 1039691 1043112 HC_gene_3776 10 - 1039805 1043112 -chrVII 1043739 1045518 HC_gene_3777 32 - 1043741 1045518 -chrVII 1045531 1046567 HC_gene_3778 51 - 1045531 1046567 -chrVII 1048229 1050054 HC_gene_3779 1527 - 1048334 1050054 -chrVII 1050094 1052205 HC_gene_3780 315 - 1050094 1052205 -chrVII 1057238 1058757 HC_gene_3781 1049 - 1057238 1058757 -chrVII 1058828 1060087 HC_gene_3782 48 - 1058910 1060087 -chrVII 1060335 1061631 HC_gene_3783 159 - 1060343 1061631 -chrVII 1061702 1063167 HC_gene_3784 986 - 1061758 1063167 -chrVII 1063615 1065054 HC_gene_3785 37 - 1063651 1065054 -chrVII 1067001 1069127 HC_gene_3786 2 - 1067001 1069127 -chrVII 1071400 1072673 LC_gene_3787 1 - 1071400 1072673 -chrVII 1072931 1073732 LC_gene_3788 1 - 1072931 1073732 -chrVII 1073748 1076145 HC_gene_3789 6 - 1073773 1076145 -chrVII 1077011 1078413 MC_gene_3790 1 - 1077011 1078413 -chrVII 1078693 1079532 LC_gene_3791 1 - 1078693 1079532 -chrVII 1079553 1080601 MC_gene_3792 1 - 1079553 1080601 -chrVII 1080711 1082737 HC_gene_3793 1 - 1080711 1082737 -chrVII 1084056 1085499 LC_gene_3794 1 - 1084056 1085499 -chrVIII 4006 5054 LC_gene_3795 1 + 4006 5054 -chrVIII 6392 7673 HC_gene_3796 89 + 6392 7651 -chrVIII 10753 11611 HC_gene_3797 67 + 10753 11564 -chrVIII 11611 11847 LC_gene_3798 1 + 11611 11847 -chrVIII 11966 12978 MC_gene_3799 2 + 11966 12978 -chrVIII 13546 14575 HC_gene_3800 36 + 13546 14571 -chrVIII 15829 17120 HC_gene_3801 7 + 15829 17120 -chrVIII 18562 19188 LC_gene_3802 1 + 18562 19188 -chrVIII 21729 23625 HC_gene_3803 24 + 21729 23610 -chrVIII 26209 28048 MC_gene_3804 2 + 26209 27985 -chrVIII 32626 33109 LC_gene_3805 1 + 32626 33109 -chrVIII 33161 34167 LC_gene_3806 1 + 33161 34167 -chrVIII 36424 38446 LC_gene_3807 1 + 36424 38446 -chrVIII 38859 39491 LC_gene_3808 1 + 38859 39491 -chrVIII 40044 42349 MC_gene_3809 1 + 40044 42310 -chrVIII 44705 45818 HC_gene_3810 20 + 44705 45786 -chrVIII 48316 48744 HC_gene_3811 2 + 48316 48744 -chrVIII 48693 50858 HC_gene_3812 6 + 48693 50660 -chrVIII 51014 53215 HC_gene_3813 22 + 51014 53200 -chrVIII 54791 56200 HC_gene_3814 113 + 54791 55953 -chrVIII 57103 59055 LC_gene_3815 1 + 57103 59020 -chrVIII 59126 60112 HC_gene_3816 2 + 59126 60112 -chrVIII 61139 62366 LC_gene_3817 1 + 61139 62366 -chrVIII 62962 64265 LC_gene_3818 1 + 62962 64265 -chrVIII 64523 65071 HC_gene_3819 10 + 64523 64991 -chrVIII 65715 66285 MC_gene_3820 1 + 65715 66285 -chrVIII 66228 66979 MC_gene_3821 1 + 66228 66979 -chrVIII 68057 68979 LC_gene_3822 1 + 68057 68979 -chrVIII 69692 72413 HC_gene_3823 22 + 69692 72413 -chrVIII 75381 76572 HC_gene_3824 4333 + 75381 76031 -chrVIII 79717 80725 HC_gene_3825 1 + 79717 80725 -chrVIII 88143 91795 LC_gene_3826 1 + 88143 91795 -chrVIII 92249 92568 MC_gene_3827 1 + 92249 92568 -chrVIII 95005 96997 MC_gene_3828 1 + 95005 96997 -chrVIII 98430 98961 HC_gene_3829 9 + 98430 98947 -chrVIII 99137 100505 HC_gene_3830 58 + 99137 100501 -chrVIII 102251 102554 HC_gene_3831 104 + 102251 102554 -chrVIII 102591 104119 HC_gene_3832 67 + 102591 104031 -chrVIII 104247 105479 HC_gene_3833 1707 + 104247 105220 -chrVIII 105824 107486 HC_gene_3834 67 + 105824 107463 -chrVIII 107758 108557 HC_gene_3835 244 + 107758 108522 -chrVIII 108685 110034 HC_gene_3836 29 + 108685 110017 -chrVIII 110094 111613 LC_gene_3837 1 + 110094 111613 -chrVIII 111576 113754 MC_gene_3838 1 + 111576 113506 -chrVIII 115537 116124 MC_gene_3839 1 + 115537 115821 -chrVIII 116714 117437 LC_gene_3840 1 + 116714 117437 -chrVIII 117789 119669 HC_gene_3841 37 + 117789 119568 -chrVIII 122629 123116 MC_gene_3842 1 + 122629 123116 -chrVIII 122914 123562 MC_gene_3843 1 + 122914 123200 -chrVIII 123882 124188 MC_gene_3844 1 + 123882 124181 -chrVIII 126487 127661 HC_gene_3845 2197 + 126487 127657 -chrVIII 127762 129213 HC_gene_3846 4 + 127762 129213 -chrVIII 129266 130887 HC_gene_3847 69 + 129266 130776 -chrVIII 131736 132980 LC_gene_3848 1 + 131736 132980 -chrVIII 133594 133997 MC_gene_3849 1 + 133594 133997 -chrVIII 135186 136821 HC_gene_3850 1 + 135186 136821 -chrVIII 138670 140025 HC_gene_3851 34 + 138670 140014 -chrVIII 141750 142306 LC_gene_3852 1 + 141750 142306 -chrVIII 143875 146248 HC_gene_3853 394 + 143875 146152 -chrVIII 146674 147800 HC_gene_3854 6 + 146674 147747 -chrVIII 148686 149213 LC_gene_3855 1 + 148686 149213 -chrVIII 149343 150260 MC_gene_3856 1 + 149343 149705 -chrVIII 150966 151551 HC_gene_3857 2 + 150966 151415 -chrVIII 151610 157558 HC_gene_3858 2 + 151610 157558 -chrVIII 155860 157681 HC_gene_3859 16 + 155860 157681 -chrVIII 159406 160670 HC_gene_3860 448 + 159406 160607 -chrVIII 160727 161954 HC_gene_3861 562 + 160727 161707 -chrVIII 164982 167145 HC_gene_3862 10 + 164982 167145 -chrVIII 167649 168221 MC_gene_3863 1 + 167649 168221 -chrVIII 170719 171632 MC_gene_3864 1 + 170719 171632 -chrVIII 173246 175503 HC_gene_3865 54 + 173246 175503 -chrVIII 175521 176962 HC_gene_3866 1 + 175521 176962 -chrVIII 176991 177198 MC_gene_3867 1 + 176991 177180 -chrVIII 178189 180366 HC_gene_3868 8 + 178189 180366 -chrVIII 180235 182013 HC_gene_3869 7 + 180235 182013 -chrVIII 181955 183903 HC_gene_3870 31 + 181955 183876 -chrVIII 184027 185022 HC_gene_3871 40 + 184027 184850 -chrVIII 187139 187589 MC_gene_3872 1 + 187139 187589 -chrVIII 187906 189137 MC_gene_3873 1 + 187906 189133 -chrVIII 189137 190125 MC_gene_3874 1 + 189137 190125 -chrVIII 189461 190458 MC_gene_3875 2 + 189461 190458 -chrVIII 190501 192959 HC_gene_3876 198 + 190501 192839 -chrVIII 193744 194103 MC_gene_3877 1 + 193744 194054 -chrVIII 195408 198056 HC_gene_3878 32 + 195408 198056 -chrVIII 198650 199191 MC_gene_3879 1 + 198650 199061 -chrVIII 201632 202233 HC_gene_3880 13 + 201632 201951 -chrVIII 203730 204625 HC_gene_3881 1 + 203730 204625 -chrVIII 204552 207444 HC_gene_3882 274 + 204552 207444 -chrVIII 207469 209425 HC_gene_3883 58 + 207469 209362 -chrVIII 209543 210693 HC_gene_3884 386 + 209543 210638 -chrVIII 210809 212280 HC_gene_3885 193 + 210809 212242 -chrVIII 213831 214461 LC_gene_3886 1 + 213831 214461 -chrVIII 218085 218361 HC_gene_3887 3 + 218085 218249 -chrVIII 218799 219556 LC_gene_3888 1 + 218799 219556 -chrVIII 220054 220673 HC_gene_3889 76 + 220054 220602 -chrVIII 220734 221360 HC_gene_3890 181 + 220734 221354 -chrVIII 221431 222925 HC_gene_3891 4 + 221431 222925 -chrVIII 222941 224320 HC_gene_3892 3 + 222941 224065 -chrVIII 229299 233653 HC_gene_3893 369 + 229299 233541 -chrVIII 234790 237871 HC_gene_3894 360 + 234790 237746 -chrVIII 239046 241478 HC_gene_3895 52 + 239046 241410 -chrVIII 241605 242396 HC_gene_3896 1141 + 241605 242000 -chrVIII 242550 246047 HC_gene_3897 63 + 242550 245759 -chrVIII 246163 248563 HC_gene_3898 53 + 246163 248450 -chrVIII 249977 250356 LC_gene_3899 1 + 249977 250356 -chrVIII 251054 252411 HC_gene_3900 24 + 251054 252383 -chrVIII 256113 260280 HC_gene_3901 14 + 256113 260280 -chrVIII 262790 263302 LC_gene_3902 1 + 262790 263302 -chrVIII 267248 268419 HC_gene_3903 238 + 267248 268319 -chrVIII 272169 272496 HC_gene_3904 1 + 272169 272496 -chrVIII 272501 273750 HC_gene_3905 98 + 272501 273697 -chrVIII 273867 276633 HC_gene_3906 22 + 273867 276534 -chrVIII 276741 278027 HC_gene_3907 65 + 276741 278027 -chrVIII 277964 280290 HC_gene_3908 38 + 277964 280196 -chrVIII 280468 281341 HC_gene_3909 174 + 280468 281340 -chrVIII 281466 282664 HC_gene_3910 133 + 281466 282664 -chrVIII 282628 283667 LC_gene_3911 1 + 282628 283667 -chrVIII 284868 285344 LC_gene_3912 1 + 284868 285328 -chrVIII 286370 287163 HC_gene_3913 2 + 286370 287091 -chrVIII 287163 288980 LC_gene_3914 1 + 287163 288980 -chrVIII 290154 290876 LC_gene_3915 1 + 290154 290876 -chrVIII 293951 296649 HC_gene_3916 14 + 293951 296649 -chrVIII 296835 297346 MC_gene_3917 1 + 296835 297346 -chrVIII 298144 299026 LC_gene_3918 1 + 298144 299026 -chrVIII 302250 302615 MC_gene_3919 1 + 302250 302615 -chrVIII 302664 304997 HC_gene_3920 1 + 302664 303243 -chrVIII 305017 305664 HC_gene_3921 1 + 305017 305280 -chrVIII 310440 314211 HC_gene_3922 13 + 310440 314115 -chrVIII 314302 314913 HC_gene_3923 8 + 314302 314903 -chrVIII 314933 315828 MC_gene_3924 3 + 314933 315828 -chrVIII 316386 318169 HC_gene_3925 2 + 316386 317214 -chrVIII 319256 319952 HC_gene_3926 5 + 319256 319937 -chrVIII 320237 323226 HC_gene_3927 24 + 320237 323135 -chrVIII 323369 324621 HC_gene_3928 144 + 323369 324581 -chrVIII 324663 326842 HC_gene_3929 45 + 324663 326842 -chrVIII 328270 330218 HC_gene_3930 194 + 328270 330177 -chrVIII 330283 332190 HC_gene_3931 4 + 330283 332160 -chrVIII 332262 333030 HC_gene_3932 140 + 332262 333030 -chrVIII 333056 336110 HC_gene_3933 20 + 333056 336109 -chrVIII 336130 337929 HC_gene_3934 76 + 336130 337906 -chrVIII 338017 340125 HC_gene_3935 38 + 338017 340125 -chrVIII 341717 342359 HC_gene_3936 42 + 341717 342359 -chrVIII 342315 344507 HC_gene_3937 54 + 342315 344486 -chrVIII 345806 348881 MC_gene_3938 1 + 345806 348881 -chrVIII 348893 349427 HC_gene_3939 8 + 348893 349427 -chrVIII 349568 352563 HC_gene_3940 5 + 349568 352516 -chrVIII 352687 353442 HC_gene_3941 174 + 352687 353418 -chrVIII 353589 354605 HC_gene_3942 76 + 353589 354605 -chrVIII 354798 356338 HC_gene_3943 16 + 354798 356274 -chrVIII 358094 358492 HC_gene_3944 5 + 358094 358492 -chrVIII 360884 362096 HC_gene_3945 78 + 360884 362096 -chrVIII 362070 363379 HC_gene_3946 607 + 362070 363001 -chrVIII 364495 365074 HC_gene_3947 14 + 364495 365074 -chrVIII 365257 366786 LC_gene_3948 1 + 365257 366786 -chrVIII 368078 368609 MC_gene_3949 1 + 368078 368518 -chrVIII 370007 370729 HC_gene_3950 162 + 370007 370610 -chrVIII 371773 373350 HC_gene_3951 50 + 371773 373347 -chrVIII 374669 375091 LC_gene_3952 1 + 374669 375091 -chrVIII 375677 377505 HC_gene_3953 140 + 375677 377340 -chrVIII 377976 380505 HC_gene_3954 1 + 377976 380505 -chrVIII 380562 381380 HC_gene_3955 4 + 380562 381380 -chrVIII 381539 382094 HC_gene_3956 69 + 381539 381995 -chrVIII 383413 384725 HC_gene_3957 88 + 383413 384568 -chrVIII 385013 387076 HC_gene_3958 907 + 385013 386839 -chrVIII 387199 387776 HC_gene_3959 501 + 387199 387713 -chrVIII 387776 388629 LC_gene_3960 1 + 387776 388629 -chrVIII 390274 392128 HC_gene_3961 125 + 390274 391995 -chrVIII 392291 392611 MC_gene_3962 1 + 392291 392595 -chrVIII 393512 394681 HC_gene_3963 116 + 393512 394432 -chrVIII 397187 399161 HC_gene_3964 12 + 397187 399140 -chrVIII 401338 402071 HC_gene_3965 307 + 401338 402071 -chrVIII 402179 402577 LC_gene_3966 1 + 402179 402577 -chrVIII 402920 403499 HC_gene_3967 3 + 402920 403405 -chrVIII 404175 406291 HC_gene_3968 24 + 404175 406264 -chrVIII 407004 411140 HC_gene_3969 5 + 407004 411140 -chrVIII 411077 412582 HC_gene_3970 21 + 411077 412350 -chrVIII 412874 413655 MC_gene_3971 1 + 412874 413655 -chrVIII 417513 420064 HC_gene_3972 6 + 417513 420064 -chrVIII 422692 423647 HC_gene_3973 935 + 422692 423579 -chrVIII 423716 424838 HC_gene_3974 321 + 423716 424827 -chrVIII 429435 429693 HC_gene_3975 9 + 429435 429693 -chrVIII 430206 433617 LC_gene_3976 1 + 430206 433617 -chrVIII 437424 438136 LC_gene_3977 1 + 437424 438136 -chrVIII 439270 440364 HC_gene_3978 34 + 439270 440364 -chrVIII 440342 442143 HC_gene_3979 8 + 440342 442143 -chrVIII 442152 443656 HC_gene_3980 56 + 442152 443656 -chrVIII 443808 445544 HC_gene_3981 205 + 443808 445512 -chrVIII 445702 447722 HC_gene_3982 9 + 445702 447722 -chrVIII 448251 451275 HC_gene_3983 4 + 448251 451260 -chrVIII 451295 452867 HC_gene_3984 17360 + 451295 452762 -chrVIII 452923 453824 HC_gene_3985 104 + 452923 453692 -chrVIII 454106 455640 HC_gene_3986 17 + 454106 455640 -chrVIII 456572 459026 HC_gene_3987 1 + 456572 459026 -chrVIII 459251 461714 HC_gene_3988 4 + 459251 461714 -chrVIII 461682 462227 HC_gene_3989 8 + 461682 462054 -chrVIII 462443 464058 HC_gene_3990 1148 + 462443 463817 -chrVIII 464948 465998 HC_gene_3991 11 + 464948 465857 -chrVIII 467177 468117 HC_gene_3992 148 + 467177 467998 -chrVIII 468182 470981 HC_gene_3993 6 + 468182 470981 -chrVIII 470885 472769 HC_gene_3994 1046 + 470885 472598 -chrVIII 473932 474593 HC_gene_3995 26 + 473932 474593 -chrVIII 475112 475371 LC_gene_3996 1 + 475112 475371 -chrVIII 480953 482110 HC_gene_3997 63 + 480953 482017 -chrVIII 484019 486422 HC_gene_3998 318 + 484019 486279 -chrVIII 486789 488061 HC_gene_3999 92 + 486789 487740 -chrVIII 488607 490496 HC_gene_4000 9 + 488607 490488 -chrVIII 490571 491902 HC_gene_4001 49 + 490571 491902 -chrVIII 491876 493776 HC_gene_4002 160 + 491876 493711 -chrVIII 493877 496487 HC_gene_4003 33 + 493877 496446 -chrVIII 496492 497493 MC_gene_4004 1 + 496492 497493 -chrVIII 497484 499001 LC_gene_4005 1 + 497484 499001 -chrVIII 499063 500198 HC_gene_4006 68 + 499063 500151 -chrVIII 501295 502313 HC_gene_4007 1 + 501295 502276 -chrVIII 502354 504485 HC_gene_4008 6 + 502354 504455 -chrVIII 506112 508794 HC_gene_4009 15 + 506112 508794 -chrVIII 508925 512188 HC_gene_4010 18 + 508925 512051 -chrVIII 512452 515063 HC_gene_4011 25 + 512452 514885 -chrVIII 516655 517360 HC_gene_4012 27 + 516655 517180 -chrVIII 517509 518942 HC_gene_4013 406 + 517509 518869 -chrVIII 518990 520568 HC_gene_4014 33 + 518990 520568 -chrVIII 522166 523059 MC_gene_4015 1 + 522166 523059 -chrVIII 523106 525220 HC_gene_4016 6 + 523106 524962 -chrVIII 528008 528704 HC_gene_4017 4 + 528008 528704 -chrVIII 529559 530559 HC_gene_4018 2 + 529559 530559 -chrVIII 534039 535727 LC_gene_4019 1 + 534039 535727 -chrVIII 541554 543627 MC_gene_4020 1 + 541554 543627 -chrVIII 548952 549680 MC_gene_4021 1 + 548952 549652 -chrVIII 550667 551530 LC_gene_4022 1 + 550667 551530 -chrVIII 552324 553628 HC_gene_4023 2 + 552324 553569 -chrVIII 553699 553983 MC_gene_4024 1 + 553699 553983 -chrVIII 554172 556226 HC_gene_4025 120 + 554172 556153 -chrVIII 557451 562044 LC_gene_4026 1 + 557451 562044 -chrVIII 353 3229 MC_gene_4027 1 - 353 3229 -chrVIII 8175 11026 HC_gene_4028 19 - 8188 11026 -chrVIII 11309 11741 LC_gene_4029 1 - 11309 11741 -chrVIII 11797 12550 LC_gene_4030 1 - 11797 12550 -chrVIII 12780 13267 LC_gene_4031 1 - 12780 13267 -chrVIII 14565 15887 HC_gene_4032 13 - 14565 15887 -chrVIII 18798 21108 HC_gene_4033 26 - 18835 21108 -chrVIII 23430 25545 HC_gene_4034 12 - 23486 25545 -chrVIII 27777 30343 HC_gene_4035 5 - 27777 30343 -chrVIII 31539 32775 HC_gene_4036 4 - 31539 32775 -chrVIII 32870 34189 HC_gene_4037 1129 - 33037 34189 -chrVIII 34258 36045 HC_gene_4038 910 - 34512 36045 -chrVIII 36251 38588 HC_gene_4039 15 - 36317 38588 -chrVIII 38682 39498 HC_gene_4040 76 - 38745 39498 -chrVIII 45629 47988 HC_gene_4041 33 - 45687 47988 -chrVIII 52946 54356 HC_gene_4042 17 - 53098 54356 -chrVIII 54545 55235 MC_gene_4043 1 - 54657 55235 -chrVIII 55494 55814 MC_gene_4044 1 - 55494 55814 -chrVIII 56496 56921 HC_gene_4045 4 - 56498 56921 -chrVIII 57414 59010 HC_gene_4046 1 - 57414 59010 -chrVIII 59089 62596 MC_gene_4047 1 - 59091 62596 -chrVIII 62811 63450 HC_gene_4048 6 - 62811 63450 -chrVIII 64329 65920 HC_gene_4049 79 - 64329 65920 -chrVIII 65950 67541 MC_gene_4050 2 - 66114 67541 -chrVIII 67638 69583 HC_gene_4051 12 - 67638 69583 -chrVIII 69613 70047 LC_gene_4052 1 - 69630 70047 -chrVIII 71884 72210 HC_gene_4053 4 - 71884 72210 -chrVIII 73932 75045 HC_gene_4054 1 - 74248 75045 -chrVIII 76001 77303 HC_gene_4055 13 - 76040 77303 -chrVIII 77315 78348 HC_gene_4056 86 - 77315 78348 -chrVIII 78882 81706 HC_gene_4057 164 - 78882 81706 -chrVIII 81739 83775 HC_gene_4058 5 - 81739 83775 -chrVIII 83651 85179 HC_gene_4059 17 - 83651 85179 -chrVIII 91188 92246 LC_gene_4060 1 - 91188 92246 -chrVIII 92347 94679 HC_gene_4061 21 - 92423 94679 -chrVIII 94746 98038 HC_gene_4062 19 - 94987 98038 -chrVIII 97935 98873 HC_gene_4063 16 - 97935 98873 -chrVIII 100233 102371 HC_gene_4064 94 - 100390 102371 -chrVIII 102487 103598 LC_gene_4065 1 - 102487 103598 -chrVIII 105144 105438 HC_gene_4066 12 - 105144 105438 -chrVIII 107841 108463 MC_gene_4067 1 - 107841 108463 -chrVIII 109719 111324 HC_gene_4068 43 - 109939 111324 -chrVIII 111464 113176 HC_gene_4069 27 - 111501 113176 -chrVIII 113338 115013 HC_gene_4070 138 - 113396 115013 -chrVIII 115094 115936 HC_gene_4071 789 - 115477 115936 -chrVIII 116460 116978 HC_gene_4072 9 - 116460 116978 -chrVIII 117361 118217 LC_gene_4073 1 - 117361 118217 -chrVIII 119539 121833 HC_gene_4074 512 - 119806 121833 -chrVIII 121875 123633 HC_gene_4075 224 - 121894 123633 -chrVIII 123978 125915 HC_gene_4076 129 - 124009 125915 -chrVIII 127703 129286 LC_gene_4077 1 - 127703 129286 -chrVIII 130404 131474 HC_gene_4078 218 - 130491 131474 -chrVIII 131578 132930 HC_gene_4079 1 - 131578 132930 -chrVIII 133392 134189 LC_gene_4080 1 - 133392 134189 -chrVIII 136657 138491 HC_gene_4081 40 - 136657 138491 -chrVIII 139375 141458 HC_gene_4082 289 - 139375 141458 -chrVIII 141667 143592 HC_gene_4083 609 - 141808 143592 -chrVIII 143863 146434 LC_gene_4084 1 - 143863 146434 -chrVIII 146382 147054 MC_gene_4085 2 - 146382 147054 -chrVIII 147202 148711 HC_gene_4086 2934 - 147670 148711 -chrVIII 149166 151232 HC_gene_4087 23 - 149166 151232 -chrVIII 157486 159216 HC_gene_4088 115 - 157608 159216 -chrVIII 160518 161310 MC_gene_4089 1 - 160518 161310 -chrVIII 161310 162052 HC_gene_4090 36 - 161580 162052 -chrVIII 161582 164747 HC_gene_4091 195 - 161582 164747 -chrVIII 164812 167498 HC_gene_4092 28 - 164871 167498 -chrVIII 167591 168575 HC_gene_4093 95 - 167591 168575 -chrVIII 168634 170421 HC_gene_4094 186 - 168733 170421 -chrVIII 170395 173012 HC_gene_4095 9 - 170395 173012 -chrVIII 175407 176805 LC_gene_4096 1 - 175407 176805 -chrVIII 176898 178034 HC_gene_4097 17 - 176945 178034 -chrVIII 179058 179692 MC_gene_4098 1 - 179058 179692 -chrVIII 181056 181721 HC_gene_4099 1 - 181078 181721 -chrVIII 183791 184497 MC_gene_4100 1 - 183791 184497 -chrVIII 184629 186920 HC_gene_4101 82 - 184735 186920 -chrVIII 186978 187697 HC_gene_4102 1324 - 187058 187697 -chrVIII 188724 189875 HC_gene_4103 80 - 188906 189875 -chrVIII 189911 190421 LC_gene_4104 1 - 190011 190421 -chrVIII 192713 193648 HC_gene_4105 119 - 192722 193648 -chrVIII 193805 195210 HC_gene_4106 36 - 193812 195210 -chrVIII 197060 198317 HC_gene_4107 128 - 197177 198317 -chrVIII 198493 201339 HC_gene_4108 55 - 198590 201339 -chrVIII 201620 204250 MC_gene_4109 4 - 201626 204250 -chrVIII 204473 207274 HC_gene_4110 8 - 204473 207274 -chrVIII 207315 207708 MC_gene_4111 1 - 207315 207708 -chrVIII 209646 210183 MC_gene_4112 1 - 209654 210183 -chrVIII 211518 212773 LC_gene_4113 1 - 211518 212773 -chrVIII 213052 214366 LC_gene_4114 1 - 213052 214366 -chrVIII 216246 217675 HC_gene_4115 1 - 216821 217675 -chrVIII 217937 219898 HC_gene_4116 161 - 218102 219898 -chrVIII 220986 222613 HC_gene_4117 31 - 221267 222613 -chrVIII 222750 223780 HC_gene_4118 60 - 222816 223780 -chrVIII 223819 225200 HC_gene_4119 95 - 223944 225200 -chrVIII 225233 227184 HC_gene_4120 482 - 225233 227184 -chrVIII 227259 229081 HC_gene_4121 101 - 227413 229081 -chrVIII 231133 231852 MC_gene_4122 1 - 231228 231852 -chrVIII 233170 234673 HC_gene_4123 82 - 233327 234673 -chrVIII 234833 236045 MC_gene_4124 1 - 234857 236045 -chrVIII 236573 237698 HC_gene_4125 2 - 236573 237698 -chrVIII 238110 238830 MC_gene_4126 1 - 238110 238830 -chrVIII 238850 239273 MC_gene_4127 1 - 238863 239273 -chrVIII 241532 242267 MC_gene_4128 1 - 241532 242267 -chrVIII 245703 246143 LC_gene_4129 1 - 245703 246143 -chrVIII 248368 249685 HC_gene_4130 19 - 248368 249685 -chrVIII 249802 250974 HC_gene_4131 2 - 249859 250974 -chrVIII 251952 253003 HC_gene_4132 1 - 251952 253003 -chrVIII 252187 253382 HC_gene_4133 34 - 252187 253382 -chrVIII 252201 253662 HC_gene_4134 6 - 252201 253662 -chrVIII 253682 255813 HC_gene_4135 2 - 253837 255813 -chrVIII 255922 256399 HC_gene_4136 1 - 255922 256399 -chrVIII 257985 261845 HC_gene_4137 1 - 258024 261845 -chrVIII 262075 262549 LC_gene_4138 1 - 262075 262549 -chrVIII 262704 267040 HC_gene_4139 7 - 262725 267040 -chrVIII 268091 272413 HC_gene_4140 67 - 268241 272413 -chrVIII 272855 273580 LC_gene_4141 1 - 272994 273580 -chrVIII 273808 274561 LC_gene_4142 1 - 273808 274561 -chrVIII 276161 277657 MC_gene_4143 1 - 276444 277657 -chrVIII 279352 280105 MC_gene_4144 1 - 279352 280105 -chrVIII 282231 283331 HC_gene_4145 999 - 282461 283331 -chrVIII 283400 284634 HC_gene_4146 30 - 283526 284634 -chrVIII 284682 286798 HC_gene_4147 8 - 284731 286798 -chrVIII 286915 288887 HC_gene_4148 849 - 286926 288887 -chrVIII 288917 289627 HC_gene_4149 2 - 288917 289627 -chrVIII 290732 292667 HC_gene_4150 89 - 290781 292667 -chrVIII 292603 292894 HC_gene_4151 2 - 292603 292894 -chrVIII 294572 296787 MC_gene_4152 1 - 294572 296787 -chrVIII 297235 298627 HC_gene_4153 109 - 297258 298627 -chrVIII 298974 302010 HC_gene_4154 29 - 299001 302010 -chrVIII 313814 314720 HC_gene_4155 38 - 313855 314720 -chrVIII 314629 316001 HC_gene_4156 18 - 314629 316001 -chrVIII 317373 319831 MC_gene_4157 1 - 317373 319831 -chrVIII 326417 328095 HC_gene_4158 112 - 326628 328095 -chrVIII 328955 330102 LC_gene_4159 1 - 328955 330102 -chrVIII 332557 332873 MC_gene_4160 1 - 332557 332873 -chrVIII 333506 335904 HC_gene_4161 52 - 333506 335904 -chrVIII 335822 337709 LC_gene_4162 1 - 335822 337709 -chrVIII 339143 341541 HC_gene_4163 50 - 339143 341541 -chrVIII 344121 345657 HC_gene_4164 20 - 344263 345657 -chrVIII 347830 349352 MC_gene_4165 1 - 347830 349352 -chrVIII 349295 349632 MC_gene_4166 1 - 349295 349632 -chrVIII 351829 352401 LC_gene_4167 1 - 351829 352401 -chrVIII 352999 353367 MC_gene_4168 1 - 353001 353367 -chrVIII 354082 354584 MC_gene_4169 1 - 354138 354584 -chrVIII 356403 358120 HC_gene_4170 12 - 356454 358120 -chrVIII 358312 358566 MC_gene_4171 1 - 358396 358566 -chrVIII 358698 359589 LC_gene_4172 1 - 358698 359589 -chrVIII 360797 361368 MC_gene_4173 1 - 360797 361368 -chrVIII 362002 364234 HC_gene_4174 25 - 362002 364234 -chrVIII 364841 368135 HC_gene_4175 15 - 364841 368135 -chrVIII 368197 369837 HC_gene_4176 128 - 368381 369837 -chrVIII 369959 371844 HC_gene_4177 128 - 369959 371844 -chrVIII 372321 374431 HC_gene_4178 164 - 372587 374431 -chrVIII 374552 375319 HC_gene_4179 4 - 374558 375319 -chrVIII 377236 377719 HC_gene_4180 127 - 377246 377719 -chrVIII 377894 379211 HC_gene_4181 3 - 377894 379211 -chrVIII 380418 381020 HC_gene_4182 1 - 380418 381020 -chrVIII 381599 382318 HC_gene_4183 2359 - 381702 382318 -chrVIII 382338 382775 HC_gene_4184 1 - 382378 382775 -chrVIII 383328 384769 HC_gene_4185 4 - 383328 384769 -chrVIII 386198 386979 HC_gene_4186 25 - 386349 386979 -chrVIII 387566 388758 HC_gene_4187 47 - 387606 388758 -chrVIII 389115 389725 MC_gene_4188 1 - 389115 389725 -chrVIII 389197 390014 MC_gene_4189 1 - 389197 390014 -chrVIII 391773 392190 LC_gene_4190 1 - 391773 392190 -chrVIII 392267 393319 HC_gene_4191 108 - 392275 393319 -chrVIII 394214 396792 HC_gene_4192 32 - 394290 396792 -chrVIII 399007 400993 HC_gene_4193 25 - 399072 400993 -chrVIII 401682 402700 HC_gene_4194 7 - 401721 402700 -chrVIII 406175 406789 MC_gene_4195 1 - 406175 406789 -chrVIII 410801 412435 HC_gene_4196 24 - 410820 412435 -chrVIII 413535 415752 HC_gene_4197 15 - 413536 415752 -chrVIII 418866 420090 MC_gene_4198 1 - 418866 420090 -chrVIII 420220 420989 HC_gene_4199 46 - 420220 420989 -chrVIII 420280 421291 HC_gene_4200 5 - 420280 421291 -chrVIII 422318 422421 HC_gene_4201 3 - 422318 422421 -chrVIII 423052 423464 LC_gene_4202 1 - 423052 423464 -chrVIII 424483 429271 HC_gene_4203 1 - 424492 429271 -chrVIII 429312 431772 HC_gene_4204 7 - 429600 431772 -chrVIII 432017 432815 MC_gene_4205 1 - 432021 432815 -chrVIII 432982 433992 MC_gene_4206 1 - 433166 433992 -chrVIII 433379 434434 MC_gene_4207 1 - 433379 434434 -chrVIII 434859 437034 HC_gene_4208 5 - 434905 437034 -chrVIII 437060 439153 HC_gene_4209 24 - 437060 439153 -chrVIII 439576 440155 LC_gene_4210 1 - 439576 440155 -chrVIII 441472 441938 LC_gene_4211 1 - 441616 441938 -chrVIII 443062 443512 LC_gene_4212 1 - 443062 443512 -chrVIII 449527 450405 MC_gene_4213 1 - 449527 450405 -chrVIII 449984 450651 MC_gene_4214 1 - 449984 450651 -chrVIII 451724 452675 LC_gene_4215 1 - 451724 452675 -chrVIII 453803 454672 LC_gene_4216 1 - 453803 454672 -chrVIII 454780 455583 MC_gene_4217 2 - 454780 455583 -chrVIII 456398 456816 MC_gene_4218 1 - 456409 456816 -chrVIII 456515 457661 MC_gene_4219 1 - 456515 457661 -chrVIII 459003 459534 LC_gene_4220 1 - 459003 459534 -chrVIII 460744 461458 MC_gene_4221 1 - 460780 461458 -chrVIII 461678 462259 MC_gene_4222 1 - 461726 462259 -chrVIII 463709 464824 HC_gene_4223 18 - 463709 464824 -chrVIII 464894 465500 HC_gene_4224 13 - 464894 465500 -chrVIII 466295 466837 LC_gene_4225 1 - 466295 466837 -chrVIII 467415 468034 MC_gene_4226 1 - 467415 468034 -chrVIII 469864 470543 MC_gene_4227 1 - 469864 470543 -chrVIII 470855 472488 LC_gene_4228 1 - 470855 472488 -chrVIII 473574 473950 LC_gene_4229 1 - 473574 473950 -chrVIII 474439 474800 HC_gene_4230 22 - 474439 474800 -chrVIII 475845 480701 HC_gene_4231 2 - 475884 480701 -chrVIII 481291 484587 HC_gene_4232 62 - 481291 484587 -chrVIII 485965 486655 HC_gene_4233 115 - 486042 486655 -chrVIII 486740 487499 HC_gene_4234 1 - 486740 487499 -chrVIII 487519 488269 HC_gene_4235 2065 - 487647 488269 -chrVIII 488347 489074 MC_gene_4236 1 - 488347 489074 -chrVIII 490022 491045 MC_gene_4237 1 - 490022 491045 -chrVIII 496184 497265 HC_gene_4238 44 - 496184 497265 -chrVIII 497316 498880 HC_gene_4239 59 - 497398 498880 -chrVIII 499550 501179 HC_gene_4240 172 - 499798 501179 -chrVIII 501867 502259 MC_gene_4241 1 - 501867 502259 -chrVIII 502668 503538 LC_gene_4242 1 - 502668 503538 -chrVIII 503573 505570 HC_gene_4243 2221 - 504335 505570 -chrVIII 507709 508661 LC_gene_4244 1 - 507709 508661 -chrVIII 511948 512126 HC_gene_4245 2 - 511948 512126 -chrVIII 514721 516526 HC_gene_4246 26 - 514781 516526 -chrVIII 516618 517250 LC_gene_4247 1 - 516618 517250 -chrVIII 518760 519202 MC_gene_4248 1 - 518760 519202 -chrVIII 519292 520279 HC_gene_4249 14 - 519292 520279 -chrVIII 520484 521844 HC_gene_4250 7 - 520484 521844 -chrVIII 523076 524944 MC_gene_4251 1 - 523076 524944 -chrVIII 528835 529834 HC_gene_4252 5 - 528835 529834 -chrVIII 530493 533465 LC_gene_4253 1 - 530493 533465 -chrVIII 540330 543468 LC_gene_4254 1 - 540330 543468 -chrVIII 543576 549400 HC_gene_4255 9 - 543576 549400 -chrIX 19486 21332 LC_gene_4256 1 + 19486 21332 -chrIX 22591 28812 HC_gene_4257 73 + 22591 28590 -chrIX 28884 30374 HC_gene_4258 4 + 28884 30374 -chrIX 31303 32663 HC_gene_4259 2 + 31303 32663 -chrIX 34896 37309 HC_gene_4260 11 + 34896 37309 -chrIX 37437 39205 HC_gene_4261 110 + 37437 39205 -chrIX 39421 41509 HC_gene_4262 54 + 39421 41509 -chrIX 41784 46118 HC_gene_4263 2 + 41784 46068 -chrIX 46188 47099 HC_gene_4264 116 + 46188 46931 -chrIX 47671 48149 HC_gene_4265 158 + 47671 48149 -chrIX 48098 51536 HC_gene_4266 3 + 48098 51515 -chrIX 53006 53899 LC_gene_4267 1 + 53006 53899 -chrIX 53997 54849 MC_gene_4268 1 + 53997 54566 -chrIX 55175 56450 HC_gene_4269 42 + 55175 56434 -chrIX 56566 57388 HC_gene_4270 58 + 56566 57382 -chrIX 62648 63046 MC_gene_4271 1 + 62648 63046 -chrIX 68691 70073 HC_gene_4272 4574 + 68691 69594 -chrIX 71611 74190 LC_gene_4273 1 + 71611 74190 -chrIX 76344 77337 MC_gene_4274 1 + 76344 77337 -chrIX 77538 80355 HC_gene_4275 39 + 77538 80355 -chrIX 83263 85094 HC_gene_4276 240 + 83263 85040 -chrIX 85254 87994 HC_gene_4277 24 + 85254 87969 -chrIX 87994 88574 MC_gene_4278 1 + 87994 88574 -chrIX 88184 88703 MC_gene_4279 1 + 88184 88703 -chrIX 88913 89360 MC_gene_4280 1 + 88913 89360 -chrIX 92577 93333 MC_gene_4281 1 + 92577 93156 -chrIX 93353 95012 HC_gene_4282 144 + 93353 95012 -chrIX 96854 98422 HC_gene_4283 39 + 96854 98422 -chrIX 100003 100401 HC_gene_4284 2 + 100003 100314 -chrIX 102178 102504 LC_gene_4285 1 + 102178 102504 -chrIX 102644 104884 HC_gene_4286 1 + 102644 104452 -chrIX 105166 105860 HC_gene_4287 51 + 105166 105835 -chrIX 113728 117134 HC_gene_4288 13 + 113728 117134 -chrIX 117930 122352 HC_gene_4289 85 + 117930 122212 -chrIX 122412 126062 HC_gene_4290 63 + 122412 125991 -chrIX 126144 127328 HC_gene_4291 201 + 126144 127199 -chrIX 127438 131947 HC_gene_4292 729 + 127438 131818 -chrIX 132217 134178 HC_gene_4293 103 + 132217 134178 -chrIX 135261 136213 HC_gene_4294 17 + 135261 136195 -chrIX 136401 137217 HC_gene_4295 5 + 136401 137217 -chrIX 137208 138247 LC_gene_4296 1 + 137208 138247 -chrIX 138574 139188 LC_gene_4297 1 + 138574 139188 -chrIX 139437 141005 HC_gene_4298 274 + 139437 141005 -chrIX 141271 141775 LC_gene_4299 1 + 141271 141775 -chrIX 142181 142521 LC_gene_4300 1 + 142181 142521 -chrIX 142889 144356 HC_gene_4301 234 + 142889 144211 -chrIX 147189 148830 LC_gene_4302 1 + 147189 148830 -chrIX 150306 151294 MC_gene_4303 1 + 150306 151294 -chrIX 150525 151519 MC_gene_4304 1 + 150525 151490 -chrIX 151561 155988 HC_gene_4305 370 + 151561 155988 -chrIX 156022 157498 HC_gene_4306 55 + 156022 157304 -chrIX 160766 163004 HC_gene_4307 51 + 160766 163004 -chrIX 164464 165183 MC_gene_4308 1 + 164464 165183 -chrIX 166397 167667 HC_gene_4309 21 + 166397 167532 -chrIX 170033 170401 MC_gene_4310 1 + 170033 170401 -chrIX 171699 173360 HC_gene_4311 47 + 171699 173102 -chrIX 173865 174809 MC_gene_4312 1 + 173865 174645 -chrIX 175035 175309 MC_gene_4313 1 + 175035 175309 -chrIX 175264 176228 MC_gene_4314 1 + 175264 176228 -chrIX 175346 176385 MC_gene_4315 1 + 175346 176385 -chrIX 177120 177517 HC_gene_4316 1 + 177120 177517 -chrIX 177553 179788 HC_gene_4317 2 + 177553 179788 -chrIX 180417 182147 HC_gene_4318 14 + 180417 182147 -chrIX 183775 186441 HC_gene_4319 5 + 183775 186441 -chrIX 187923 188972 MC_gene_4320 2 + 187923 188972 -chrIX 188986 191068 HC_gene_4321 6 + 188986 191068 -chrIX 193455 195931 HC_gene_4322 44 + 193455 195389 -chrIX 196280 196654 HC_gene_4323 1 + 196280 196573 -chrIX 196743 197464 LC_gene_4324 1 + 196743 197464 -chrIX 199610 200530 MC_gene_4325 1 + 199610 200530 -chrIX 202250 202926 HC_gene_4326 1 + 202250 202926 -chrIX 205126 206172 MC_gene_4327 1 + 205126 205972 -chrIX 207587 210569 MC_gene_4328 1 + 207587 210569 -chrIX 212454 215076 HC_gene_4329 1232 + 212454 214783 -chrIX 216251 217903 HC_gene_4330 286 + 216251 217824 -chrIX 220957 221484 HC_gene_4331 2 + 220957 221114 -chrIX 222869 224912 HC_gene_4332 6 + 222869 224912 -chrIX 225276 225658 MC_gene_4333 1 + 225276 225642 -chrIX 227771 228574 HC_gene_4334 2 + 227771 228574 -chrIX 229759 230349 MC_gene_4335 1 + 229759 230349 -chrIX 232435 232884 MC_gene_4336 1 + 232435 232884 -chrIX 233011 233634 LC_gene_4337 1 + 233011 233634 -chrIX 235740 236098 LC_gene_4338 1 + 235740 236098 -chrIX 238080 238944 LC_gene_4339 1 + 238080 238944 -chrIX 242005 242873 HC_gene_4340 121 + 242005 242811 -chrIX 243648 244087 HC_gene_4341 5 + 243648 244000 -chrIX 244320 244769 LC_gene_4342 1 + 244320 244769 -chrIX 245709 245972 MC_gene_4343 1 + 245709 245972 -chrIX 247216 247926 HC_gene_4344 1 + 247216 247926 -chrIX 249651 252272 HC_gene_4345 168 + 249651 252156 -chrIX 253658 254723 LC_gene_4346 1 + 253658 254723 -chrIX 255085 256451 HC_gene_4347 2544 + 255085 256027 -chrIX 257816 258528 HC_gene_4348 6 + 257816 258528 -chrIX 257835 258821 HC_gene_4349 27 + 257835 258821 -chrIX 258597 260108 HC_gene_4350 48 + 258597 259907 -chrIX 260150 261075 HC_gene_4351 49 + 260150 260980 -chrIX 261130 265114 HC_gene_4352 16 + 261130 265114 -chrIX 268202 268508 HC_gene_4353 1 + 268202 268480 -chrIX 268618 270722 HC_gene_4354 28 + 268618 270673 -chrIX 270821 271090 HC_gene_4355 3 + 270821 271090 -chrIX 271061 273330 HC_gene_4356 13 + 271061 273297 -chrIX 274521 274981 LC_gene_4357 1 + 274521 274981 -chrIX 276496 277649 HC_gene_4358 251 + 276496 277620 -chrIX 277694 278232 HC_gene_4359 198 + 277694 278232 -chrIX 278211 280081 HC_gene_4360 105 + 278211 280081 -chrIX 283098 284621 MC_gene_4361 1 + 283098 284621 -chrIX 283360 284764 MC_gene_4362 1 + 283360 284720 -chrIX 285514 287751 HC_gene_4363 39 + 285514 287751 -chrIX 289289 290717 HC_gene_4364 8 + 289289 290671 -chrIX 292462 295920 HC_gene_4365 11 + 292462 295880 -chrIX 300428 301917 LC_gene_4366 1 + 300428 301576 -chrIX 301937 303669 HC_gene_4367 3 + 301937 303669 -chrIX 304380 305102 MC_gene_4368 1 + 304380 305078 -chrIX 306361 307438 LC_gene_4369 1 + 306361 307438 -chrIX 308202 308594 LC_gene_4370 1 + 308202 308594 -chrIX 310123 310705 LC_gene_4371 1 + 310123 310701 -chrIX 311054 312786 HC_gene_4372 86 + 311054 312692 -chrIX 312868 315039 HC_gene_4373 150 + 312868 314538 -chrIX 315071 316394 HC_gene_4374 63 + 315071 316309 -chrIX 316742 318187 HC_gene_4375 3650 + 316742 318022 -chrIX 318187 319474 MC_gene_4376 1 + 318187 319474 -chrIX 321428 323029 HC_gene_4377 218 + 321428 322371 -chrIX 323049 324317 HC_gene_4378 1 + 323049 324206 -chrIX 324613 325539 MC_gene_4379 1 + 324613 325539 -chrIX 325950 328158 HC_gene_4380 27 + 325950 328104 -chrIX 329815 331634 MC_gene_4381 1 + 329815 331634 -chrIX 333399 334665 HC_gene_4382 290 + 333399 334665 -chrIX 334843 335778 HC_gene_4383 169 + 334843 335718 -chrIX 338281 341930 HC_gene_4384 49 + 338281 341664 -chrIX 342488 343190 HC_gene_4385 303 + 342488 342979 -chrIX 343854 345458 HC_gene_4386 8 + 343854 345430 -chrIX 345557 348566 HC_gene_4387 42 + 345557 348566 -chrIX 349081 350197 HC_gene_4388 44 + 349081 350091 -chrIX 350271 350842 HC_gene_4389 303 + 350271 350607 -chrIX 353879 355532 HC_gene_4390 12 + 353879 355511 -chrIX 357150 357440 HC_gene_4391 18 + 357150 357404 -chrIX 360870 362997 HC_gene_4392 24 + 360870 362997 -chrIX 363208 364741 HC_gene_4393 75 + 363208 364638 -chrIX 364842 365477 HC_gene_4394 50 + 364842 365412 -chrIX 365489 366471 LC_gene_4395 1 + 365489 366471 -chrIX 370676 373107 HC_gene_4396 8 + 370676 373107 -chrIX 374471 375315 HC_gene_4397 33 + 374471 375309 -chrIX 375361 377414 MC_gene_4398 3 + 375361 377289 -chrIX 378460 380123 HC_gene_4399 101 + 378460 379881 -chrIX 381068 383697 MC_gene_4400 8 + 381068 383595 -chrIX 384228 386092 HC_gene_4401 51 + 384228 385817 -chrIX 387035 388459 HC_gene_4402 5 + 387035 388459 -chrIX 389416 390431 LC_gene_4403 1 + 389416 390431 -chrIX 397256 398631 HC_gene_4404 40 + 397256 398447 -chrIX 398701 399495 HC_gene_4405 258 + 398701 399358 -chrIX 399757 402778 HC_gene_4406 25 + 399757 402760 -chrIX 403640 404893 HC_gene_4407 14 + 403640 404893 -chrIX 405004 406281 MC_gene_4408 1 + 405004 406281 -chrIX 410020 410543 HC_gene_4409 11 + 410020 410498 -chrIX 410698 411784 HC_gene_4410 8 + 410698 411784 -chrIX 412262 413058 MC_gene_4411 1 + 412262 413058 -chrIX 415068 415484 LC_gene_4412 1 + 415068 415315 -chrIX 416069 419543 HC_gene_4413 15 + 416069 419528 -chrIX 419773 420329 MC_gene_4414 1 + 419773 420329 -chrIX 421026 421918 HC_gene_4415 31 + 421026 421918 -chrIX 423062 423898 HC_gene_4416 545 + 423062 423768 -chrIX 424726 425074 MC_gene_4417 1 + 424726 425074 -chrIX 425304 425706 MC_gene_4418 1 + 425304 425706 -chrIX 425829 426301 MC_gene_4419 1 + 425829 426301 -chrIX 429684 430442 HC_gene_4420 1 + 429684 430442 -chrIX 431241 433360 LC_gene_4421 1 + 431241 433360 -chrIX 467 4368 LC_gene_4422 1 - 467 4368 -chrIX 20350 21822 MC_gene_4423 1 - 20350 21822 -chrIX 22832 26154 MC_gene_4424 1 - 22832 26154 -chrIX 28504 28817 MC_gene_4425 1 - 28504 28817 -chrIX 30245 31327 HC_gene_4426 42 - 30316 31327 -chrIX 33512 34976 HC_gene_4427 62 - 33558 34976 -chrIX 35110 35925 HC_gene_4428 16 - 35113 35925 -chrIX 36197 37267 LC_gene_4429 1 - 36197 37267 -chrIX 39072 39439 HC_gene_4430 6 - 39072 39439 -chrIX 40084 41468 MC_gene_4431 1 - 40084 41468 -chrIX 45122 45923 MC_gene_4432 1 - 45122 45923 -chrIX 46595 47552 HC_gene_4433 131 - 46739 47552 -chrIX 51411 53185 HC_gene_4434 6 - 51412 53185 -chrIX 53832 55047 HC_gene_4435 86 - 53833 55047 -chrIX 55965 57160 MC_gene_4436 1 - 56331 57160 -chrIX 57287 60840 HC_gene_4437 16 - 57287 60840 -chrIX 60695 62760 HC_gene_4438 2 - 60695 62760 -chrIX 62890 68210 HC_gene_4439 42 - 62890 68210 -chrIX 69515 73632 HC_gene_4440 17 - 69519 73632 -chrIX 73965 76130 HC_gene_4441 7 - 73965 76130 -chrIX 75865 77327 HC_gene_4442 90 - 75865 77327 -chrIX 80250 83069 HC_gene_4443 31 - 80253 83069 -chrIX 83044 84736 LC_gene_4444 1 - 83044 84736 -chrIX 84912 85904 MC_gene_4445 1 - 84912 85904 -chrIX 87788 88393 MC_gene_4446 1 - 87837 88393 -chrIX 88432 89726 HC_gene_4447 356 - 88610 89726 -chrIX 89828 92838 HC_gene_4448 11 - 89867 92838 -chrIX 93075 93764 HC_gene_4449 5 - 93083 93764 -chrIX 94763 96434 HC_gene_4450 50 - 94907 96434 -chrIX 97075 98292 MC_gene_4451 1 - 97146 98292 -chrIX 98292 99435 HC_gene_4452 3032 - 98303 99435 -chrIX 100598 102311 HC_gene_4453 26 - 100656 102311 -chrIX 105705 109690 HC_gene_4454 2 - 105705 109690 -chrIX 110710 112939 MC_gene_4455 1 - 110972 112939 -chrIX 113651 116100 LC_gene_4456 1 - 113651 116100 -chrIX 116627 117669 HC_gene_4457 163 - 116935 117669 -chrIX 125431 125920 MC_gene_4458 1 - 125431 125920 -chrIX 125873 126935 LC_gene_4459 1 - 125873 126935 -chrIX 126935 127544 HC_gene_4460 1 - 127037 127544 -chrIX 127421 127750 HC_gene_4461 1 - 127421 127750 -chrIX 128834 129786 MC_gene_4462 1 - 128834 129786 -chrIX 132104 135299 HC_gene_4463 1 - 132104 135299 -chrIX 135321 136037 MC_gene_4464 1 - 135481 136037 -chrIX 136057 138079 HC_gene_4465 32 - 136127 138079 -chrIX 139157 140569 LC_gene_4466 1 - 139157 140569 -chrIX 140492 141636 HC_gene_4467 170 - 140492 141636 -chrIX 144027 146262 HC_gene_4468 14 - 144071 146262 -chrIX 147466 148889 HC_gene_4469 2 - 147581 148889 -chrIX 148925 150142 HC_gene_4470 67 - 148975 150142 -chrIX 150491 151350 MC_gene_4471 1 - 150491 151350 -chrIX 154230 154818 HC_gene_4472 46 - 154234 154818 -chrIX 154863 155026 MC_gene_4473 1 - 154863 155026 -chrIX 155088 155862 HC_gene_4474 3 - 155088 155862 -chrIX 157083 160253 HC_gene_4475 61 - 157112 160253 -chrIX 160813 162509 LC_gene_4476 1 - 160813 162509 -chrIX 163027 165930 HC_gene_4477 16 - 163027 165930 -chrIX 167249 169661 HC_gene_4478 34 - 167290 169661 -chrIX 169834 171536 HC_gene_4479 15 - 169903 171536 -chrIX 172220 173631 HC_gene_4480 44 - 172225 173631 -chrIX 175200 177288 MC_gene_4481 2 - 175200 177288 -chrIX 177375 179534 LC_gene_4482 1 - 177375 179534 -chrIX 179544 180249 HC_gene_4483 79 - 179672 180249 -chrIX 181915 183162 HC_gene_4484 36 - 181963 183162 -chrIX 185958 187675 HC_gene_4485 1078 - 185958 187675 -chrIX 187625 188860 HC_gene_4486 52 - 187625 188860 -chrIX 190908 193231 HC_gene_4487 49 - 190917 193231 -chrIX 195284 196308 HC_gene_4488 18 - 195298 196308 -chrIX 197173 197454 MC_gene_4489 1 - 197173 197454 -chrIX 197709 199477 HC_gene_4490 87 - 197857 199477 -chrIX 199528 200194 HC_gene_4491 59 - 199566 200194 -chrIX 200301 202091 HC_gene_4492 28 - 200432 202091 -chrIX 202165 203302 HC_gene_4493 6 - 202187 203302 -chrIX 203329 204994 HC_gene_4494 49 - 203329 204994 -chrIX 205311 207102 MC_gene_4495 1 - 205311 207102 -chrIX 210723 212027 HC_gene_4496 57 - 210883 212027 -chrIX 214670 215955 HC_gene_4497 63 - 214672 215955 -chrIX 216057 216490 HC_gene_4498 28 - 216104 216490 -chrIX 217611 220763 HC_gene_4499 367 - 217753 220763 -chrIX 220902 222540 HC_gene_4500 102 - 221026 222540 -chrIX 222552 224211 MC_gene_4501 1 - 222552 224211 -chrIX 222715 225208 MC_gene_4502 1 - 222715 225208 -chrIX 225801 226257 LC_gene_4503 1 - 225801 226257 -chrIX 226494 230028 HC_gene_4504 18 - 226494 230028 -chrIX 230087 231135 HC_gene_4505 69 - 230143 231135 -chrIX 231190 232405 HC_gene_4506 1658 - 231391 232405 -chrIX 232639 235533 HC_gene_4507 16 - 232796 235533 -chrIX 235645 237820 HC_gene_4508 13 - 235664 237820 -chrIX 237961 240893 MC_gene_4509 2 - 237961 240893 -chrIX 241082 241815 HC_gene_4510 196 - 241174 241815 -chrIX 242557 243793 MC_gene_4511 5 - 242633 243793 -chrIX 243834 244501 HC_gene_4512 344 - 243925 244501 -chrIX 244591 245579 HC_gene_4513 21 - 244623 245579 -chrIX 245940 247455 MC_gene_4514 3 - 245940 247455 -chrIX 247754 248464 MC_gene_4515 1 - 247754 248464 -chrIX 248760 249075 HC_gene_4516 3 - 248780 249075 -chrIX 251931 252985 MC_gene_4517 1 - 251931 252985 -chrIX 251967 253858 MC_gene_4518 3 - 251967 253858 -chrIX 253870 254726 MC_gene_4519 1 - 253870 254726 -chrIX 255710 257095 HC_gene_4520 3182 - 255934 257095 -chrIX 257503 258336 HC_gene_4521 597 - 257707 258336 -chrIX 258756 259241 MC_gene_4522 1 - 258756 259241 -chrIX 259542 260397 MC_gene_4523 1 - 259752 260397 -chrIX 260095 260874 MC_gene_4524 1 - 260095 260874 -chrIX 264814 267842 HC_gene_4525 53 - 264929 267842 -chrIX 266116 267844 HC_gene_4526 1 - 266116 267844 -chrIX 269200 270682 LC_gene_4527 1 - 269200 270682 -chrIX 270944 271496 MC_gene_4528 1 - 270944 271496 -chrIX 272647 273873 HC_gene_4529 94 - 272778 273873 -chrIX 273948 274947 HC_gene_4530 422 - 273970 274947 -chrIX 274980 276331 MC_gene_4531 1 - 274980 276331 -chrIX 277296 278259 LC_gene_4532 1 - 277510 278259 -chrIX 279825 282891 HC_gene_4533 13 - 279978 282891 -chrIX 283020 285020 MC_gene_4534 1 - 283020 285020 -chrIX 287359 289030 HC_gene_4535 117 - 287434 289030 -chrIX 289089 290103 HC_gene_4536 247 - 289172 290103 -chrIX 290222 291778 HC_gene_4537 118 - 290229 291778 -chrIX 295815 299022 HC_gene_4538 20 - 295851 299022 -chrIX 299042 300066 HC_gene_4539 9 - 299331 300066 -chrIX 300444 301363 HC_gene_4540 13 - 300444 301363 -chrIX 303312 307966 HC_gene_4541 213 - 303591 307966 -chrIX 308485 310593 HC_gene_4542 48 - 308489 310593 -chrIX 311842 312560 LC_gene_4543 1 - 311842 312560 -chrIX 313896 314908 HC_gene_4544 61 - 313896 314908 -chrIX 318080 321036 HC_gene_4545 3 - 318101 321036 -chrIX 321158 321970 MC_gene_4546 1 - 321618 321970 -chrIX 324183 324360 LC_gene_4547 1 - 324183 324360 -chrIX 324978 325606 HC_gene_4548 69 - 325003 325606 -chrIX 328007 332534 HC_gene_4549 8 - 328007 332534 -chrIX 334499 336241 HC_gene_4550 61 - 334507 336241 -chrIX 336484 338200 HC_gene_4551 6 - 336889 338200 -chrIX 338220 340960 MC_gene_4552 1 - 338367 340960 -chrIX 342006 342306 MC_gene_4553 1 - 342006 342306 -chrIX 342795 343854 HC_gene_4554 53 - 342831 343854 -chrIX 345246 345421 MC_gene_4555 1 - 345246 345421 -chrIX 347498 348517 HC_gene_4556 41 - 347687 348517 -chrIX 348731 349714 LC_gene_4557 1 - 348731 349714 -chrIX 350409 353627 HC_gene_4558 32 - 350433 353627 -chrIX 355809 356961 HC_gene_4559 77 - 355809 356961 -chrIX 357161 358477 HC_gene_4560 5 - 357205 358477 -chrIX 357302 360480 HC_gene_4561 8 - 357302 360480 -chrIX 365163 369943 HC_gene_4562 63 - 365371 369943 -chrIX 370663 371170 LC_gene_4563 1 - 370663 371170 -chrIX 372784 374366 HC_gene_4564 38 - 373005 374366 -chrIX 376982 378262 HC_gene_4565 84 - 377175 378262 -chrIX 379835 381722 MC_gene_4566 1 - 379835 381722 -chrIX 381732 382140 MC_gene_4567 1 - 381732 382140 -chrIX 383135 384101 HC_gene_4568 69 - 383359 384101 -chrIX 385671 386626 HC_gene_4569 33 - 385685 386626 -chrIX 393649 395944 MC_gene_4570 2 - 393649 395944 -chrIX 395823 397106 MC_gene_4571 1 - 395823 397106 -chrIX 398962 399542 MC_gene_4572 1 - 399219 399542 -chrIX 399692 401951 LC_gene_4573 1 - 399692 401951 -chrIX 402624 403500 HC_gene_4574 47 - 402649 403500 -chrIX 404647 406008 HC_gene_4575 57 - 404778 406008 -chrIX 406104 407967 HC_gene_4576 13 - 406104 407967 -chrIX 408364 410463 MC_gene_4577 1 - 408364 410463 -chrIX 410198 410731 MC_gene_4578 1 - 410198 410731 -chrIX 410426 411119 MC_gene_4579 1 - 410426 411119 -chrIX 411979 412811 HC_gene_4580 22 - 411979 412811 -chrIX 412915 414786 HC_gene_4581 12 - 412959 414786 -chrIX 414902 415676 HC_gene_4582 27 - 414902 415676 -chrIX 419403 420772 HC_gene_4583 483 - 419449 420772 -chrIX 419541 422892 HC_gene_4584 176 - 419541 422892 -chrIX 423669 424544 HC_gene_4585 133 - 423685 424544 -chrIX 427324 429166 MC_gene_4586 1 - 427324 429166 -chrIX 430397 432242 HC_gene_4587 4 - 430397 432242 -chrX 20474 21297 LC_gene_4588 1 + 20474 21297 -chrX 21954 22717 HC_gene_4589 26 + 21954 22717 -chrX 23124 23942 HC_gene_4590 193 + 23124 23864 -chrX 26943 29392 HC_gene_4591 14 + 26943 29392 -chrX 31822 33475 HC_gene_4592 47 + 31822 33452 -chrX 34288 36162 LC_gene_4593 1 + 34288 36162 -chrX 36768 37821 HC_gene_4594 91 + 36768 37817 -chrX 37911 39213 HC_gene_4595 10 + 37911 39026 -chrX 39233 40159 HC_gene_4596 1 + 39233 40064 -chrX 41517 41901 LC_gene_4597 1 + 41517 41901 -chrX 47695 48499 MC_gene_4598 1 + 47695 48499 -chrX 49218 50124 LC_gene_4599 1 + 49218 50124 -chrX 50232 50712 HC_gene_4600 7 + 50232 50669 -chrX 53347 54419 HC_gene_4601 21 + 53347 54419 -chrX 54375 56415 HC_gene_4602 8 + 54375 56408 -chrX 58596 58984 MC_gene_4603 1 + 58596 58981 -chrX 59323 59822 MC_gene_4604 1 + 59323 59822 -chrX 60820 63694 HC_gene_4605 28 + 60820 63606 -chrX 63761 67683 HC_gene_4606 55 + 63761 67645 -chrX 67810 68891 HC_gene_4607 4 + 67810 68888 -chrX 69298 71182 HC_gene_4608 32 + 69298 71013 -chrX 71345 72727 HC_gene_4609 26 + 71345 72643 -chrX 72727 73134 LC_gene_4610 1 + 72727 73134 -chrX 73755 75082 HC_gene_4611 350 + 73755 74854 -chrX 75905 76797 HC_gene_4612 6535 + 75905 76614 -chrX 76852 77234 MC_gene_4613 1 + 76852 77234 -chrX 77997 79482 MC_gene_4614 1 + 77997 79482 -chrX 78569 80087 MC_gene_4615 1 + 78569 80087 -chrX 80124 82543 HC_gene_4616 120 + 80124 81969 -chrX 83208 83915 HC_gene_4617 168 + 83208 83897 -chrX 83991 85506 HC_gene_4618 52 + 83991 85444 -chrX 85644 87659 HC_gene_4619 3 + 85644 87580 -chrX 88717 89349 HC_gene_4620 215 + 88717 89254 -chrX 89349 90675 LC_gene_4621 1 + 89349 90675 -chrX 90763 92080 HC_gene_4622 2002 + 90763 91922 -chrX 92091 92798 LC_gene_4623 1 + 92091 92798 -chrX 94975 96384 HC_gene_4624 275 + 94975 96166 -chrX 96662 97113 LC_gene_4625 1 + 96662 96939 -chrX 97707 99621 HC_gene_4626 39 + 97707 99611 -chrX 99650 100674 LC_gene_4627 1 + 99650 100674 -chrX 101121 101859 HC_gene_4628 5 + 101121 101859 -chrX 104956 106310 HC_gene_4629 361 + 104956 106202 -chrX 106377 107144 HC_gene_4630 680 + 106377 106881 -chrX 109822 110573 MC_gene_4631 2 + 109822 110403 -chrX 111392 112241 MC_gene_4632 1 + 111392 112241 -chrX 111579 113760 MC_gene_4633 1 + 111579 113760 -chrX 116486 117951 HC_gene_4634 36 + 116486 117951 -chrX 117869 118957 HC_gene_4635 2 + 117869 118957 -chrX 119509 122302 HC_gene_4636 5036 + 119509 122007 -chrX 122302 123431 LC_gene_4637 1 + 122302 123431 -chrX 123767 126496 HC_gene_4638 3 + 123767 126496 -chrX 126671 129123 HC_gene_4639 5 + 126671 129123 -chrX 134245 136156 MC_gene_4640 1 + 134245 136156 -chrX 136935 137223 HC_gene_4641 2 + 136935 137094 -chrX 137333 139602 HC_gene_4642 9 + 137333 139429 -chrX 140378 141662 HC_gene_4643 447 + 140378 141619 -chrX 141870 142997 MC_gene_4644 1 + 141870 142884 -chrX 143165 144922 HC_gene_4645 13 + 143165 144922 -chrX 145123 146246 HC_gene_4646 113 + 145123 146110 -chrX 146324 146910 HC_gene_4647 26 + 146324 146902 -chrX 147069 148051 HC_gene_4648 354 + 147069 147895 -chrX 150865 151896 HC_gene_4649 382 + 150865 151678 -chrX 152401 153447 MC_gene_4650 1 + 152401 153447 -chrX 155012 156489 MC_gene_4651 1 + 155012 156489 -chrX 158155 159622 HC_gene_4652 41 + 158155 159512 -chrX 160540 161847 HC_gene_4653 79 + 160540 161703 -chrX 161894 164323 HC_gene_4654 5 + 161894 164319 -chrX 172821 173545 MC_gene_4655 1 + 172821 173543 -chrX 177712 178018 MC_gene_4656 1 + 177712 178018 -chrX 177827 178162 MC_gene_4657 1 + 177827 178162 -chrX 177862 178746 MC_gene_4658 1 + 177862 178746 -chrX 178726 180182 MC_gene_4659 1 + 178726 180182 -chrX 180510 181233 HC_gene_4660 10 + 180510 180831 -chrX 181506 182672 MC_gene_4661 1 + 181506 182117 -chrX 182692 183295 MC_gene_4662 1 + 182692 183295 -chrX 184492 185663 HC_gene_4663 24 + 184492 185550 -chrX 186769 187004 MC_gene_4664 1 + 186769 187004 -chrX 186905 187097 MC_gene_4665 1 + 186905 187097 -chrX 187027 188086 MC_gene_4666 1 + 187027 188086 -chrX 189697 190665 HC_gene_4667 246 + 189697 190373 -chrX 191685 192467 HC_gene_4668 31 + 191685 192467 -chrX 192479 193742 HC_gene_4669 107 + 192479 193653 -chrX 193855 195305 HC_gene_4670 14 + 193855 195305 -chrX 195973 197322 HC_gene_4671 207 + 195973 197230 -chrX 204297 204552 MC_gene_4672 1 + 204297 204552 -chrX 204742 204954 MC_gene_4673 1 + 204742 204910 -chrX 205268 207758 HC_gene_4674 17 + 205268 207603 -chrX 207824 209917 HC_gene_4675 204 + 207824 209738 -chrX 211929 213834 LC_gene_4676 1 + 211929 213834 -chrX 217614 220182 MC_gene_4677 1 + 217614 220182 -chrX 220579 223476 HC_gene_4678 1 + 220579 223476 -chrX 224264 227159 LC_gene_4679 1 + 224264 227159 -chrX 227281 228032 HC_gene_4680 214 + 227281 227939 -chrX 228032 228803 MC_gene_4681 1 + 228032 228803 -chrX 228797 230917 LC_gene_4682 1 + 228797 230917 -chrX 231257 233875 HC_gene_4683 11 + 231257 233875 -chrX 236815 237176 HC_gene_4684 19 + 236815 237072 -chrX 237229 238442 HC_gene_4685 2 + 237229 238437 -chrX 239324 240270 HC_gene_4686 9 + 239324 240200 -chrX 240516 241871 MC_gene_4687 1 + 240516 241871 -chrX 241890 245478 HC_gene_4688 8 + 241890 245335 -chrX 245545 246388 HC_gene_4689 214 + 245545 246301 -chrX 246451 247127 HC_gene_4690 91 + 246451 247046 -chrX 247160 251783 HC_gene_4691 1 + 247160 251768 -chrX 253773 254532 LC_gene_4692 1 + 253773 254532 -chrX 257207 261215 HC_gene_4693 15 + 257207 261046 -chrX 261643 262379 MC_gene_4694 1 + 261643 262379 -chrX 268024 268393 MC_gene_4695 1 + 268024 268393 -chrX 268771 269897 HC_gene_4696 203 + 268771 269897 -chrX 272745 274793 HC_gene_4697 7 + 272745 274793 -chrX 273558 274967 HC_gene_4698 6 + 273558 274967 -chrX 278775 281037 HC_gene_4699 4 + 278775 281033 -chrX 281069 283665 HC_gene_4700 30 + 281069 283665 -chrX 289645 291147 HC_gene_4701 2 + 289645 291147 -chrX 291495 295091 HC_gene_4702 39 + 291495 295048 -chrX 295179 299232 HC_gene_4703 56 + 295179 299171 -chrX 303095 305311 HC_gene_4704 27 + 303095 305225 -chrX 305467 305859 LC_gene_4705 1 + 305467 305859 -chrX 306085 308030 HC_gene_4706 13 + 306085 308030 -chrX 310894 312146 MC_gene_4707 1 + 310894 312146 -chrX 312655 313087 MC_gene_4708 1 + 312655 313020 -chrX 316692 317216 HC_gene_4709 188 + 316692 317182 -chrX 317257 319897 HC_gene_4710 12 + 317257 319879 -chrX 319974 323187 HC_gene_4711 21 + 319974 323183 -chrX 323391 324875 HC_gene_4712 59 + 323391 324824 -chrX 324927 326282 HC_gene_4713 25 + 324927 326282 -chrX 329780 330228 HC_gene_4714 2 + 329780 330228 -chrX 333327 334200 HC_gene_4715 372 + 333327 334167 -chrX 334258 335892 HC_gene_4716 55 + 334258 335892 -chrX 335874 337252 HC_gene_4717 54 + 335874 337231 -chrX 338003 339405 HC_gene_4718 410 + 338003 339400 -chrX 341828 342348 HC_gene_4719 2 + 341828 342348 -chrX 342459 345916 HC_gene_4720 31 + 342459 345804 -chrX 345963 347529 HC_gene_4721 23 + 345963 347419 -chrX 348275 348881 LC_gene_4722 1 + 348275 348881 -chrX 349200 350061 MC_gene_4723 1 + 349200 349857 -chrX 352360 353906 HC_gene_4724 22 + 352360 353906 -chrX 354462 355182 LC_gene_4725 1 + 354462 355182 -chrX 357525 358136 HC_gene_4726 17 + 357525 358134 -chrX 358141 360066 LC_gene_4727 1 + 358141 360066 -chrX 361169 365616 HC_gene_4728 22 + 361169 365568 -chrX 365724 368619 HC_gene_4729 37 + 365724 368474 -chrX 374267 374861 LC_gene_4730 1 + 374267 374861 -chrX 375048 376303 MC_gene_4731 2 + 375048 376303 -chrX 376548 377443 MC_gene_4732 1 + 376548 377443 -chrX 377569 378291 LC_gene_4733 1 + 377569 378291 -chrX 378704 380286 HC_gene_4734 61 + 378704 380253 -chrX 380641 381272 MC_gene_4735 1 + 380641 381272 -chrX 381287 383763 HC_gene_4736 552 + 381287 383629 -chrX 383809 386253 HC_gene_4737 61 + 383809 386233 -chrX 386629 387104 LC_gene_4738 1 + 386629 387104 -chrX 387632 388388 HC_gene_4739 55 + 387632 388388 -chrX 388363 390085 LC_gene_4740 1 + 388363 390085 -chrX 392229 393801 HC_gene_4741 558 + 392229 393758 -chrX 393901 395805 HC_gene_4742 15 + 393901 395715 -chrX 398265 398939 MC_gene_4743 2 + 398265 398939 -chrX 398556 398977 MC_gene_4744 1 + 398556 398976 -chrX 402795 405525 HC_gene_4745 5 + 402795 405525 -chrX 405250 407416 HC_gene_4746 14 + 405250 407416 -chrX 407531 409457 HC_gene_4747 225 + 407531 409284 -chrX 410653 411236 MC_gene_4748 1 + 410653 411236 -chrX 413611 413864 MC_gene_4749 1 + 413611 413864 -chrX 413674 414142 MC_gene_4750 1 + 413674 413927 -chrX 414380 414962 LC_gene_4751 1 + 414380 414962 -chrX 415187 415427 HC_gene_4752 7 + 415187 415427 -chrX 416505 416917 LC_gene_4753 1 + 416505 416917 -chrX 417553 417820 LC_gene_4754 1 + 417553 417820 -chrX 421894 422598 HC_gene_4755 18 + 421894 422522 -chrX 422654 423169 MC_gene_4756 1 + 422654 423125 -chrX 429731 431435 HC_gene_4757 3 + 429731 431416 -chrX 432484 433221 HC_gene_4758 90 + 432484 433188 -chrX 434924 436257 HC_gene_4759 619 + 434924 436148 -chrX 436744 438811 HC_gene_4760 87 + 436744 438741 -chrX 438833 441376 HC_gene_4761 71 + 438833 441342 -chrX 442840 445419 HC_gene_4762 1 + 442840 445419 -chrX 445864 448315 HC_gene_4763 30 + 445864 448314 -chrX 449192 450899 HC_gene_4764 38 + 449192 450899 -chrX 450922 452233 HC_gene_4765 504 + 450922 452022 -chrX 452317 453524 HC_gene_4766 5 + 452317 453524 -chrX 456025 456258 HC_gene_4767 4 + 456025 456258 -chrX 456034 456833 HC_gene_4768 4 + 456034 456733 -chrX 456853 457808 MC_gene_4769 1 + 456853 457791 -chrX 457966 458933 HC_gene_4770 10 + 457966 458825 -chrX 459393 459952 HC_gene_4771 15 + 459393 459947 -chrX 460340 461693 HC_gene_4772 31 + 460340 461691 -chrX 461767 464613 HC_gene_4773 486 + 461767 464417 -chrX 466496 467220 MC_gene_4774 1 + 466496 467206 -chrX 467240 469038 MC_gene_4775 2 + 467240 469038 -chrX 468546 469361 MC_gene_4776 1 + 468546 469361 -chrX 469754 470409 HC_gene_4777 34 + 469754 470249 -chrX 472153 472805 MC_gene_4778 1 + 472153 472805 -chrX 475494 478373 MC_gene_4779 2 + 475494 478373 -chrX 477665 478948 MC_gene_4780 1 + 477665 478948 -chrX 481681 485602 MC_gene_4781 1 + 481681 485602 -chrX 491053 492455 HC_gene_4782 41 + 491053 492409 -chrX 496640 497270 HC_gene_4783 73 + 496640 497196 -chrX 497342 500762 HC_gene_4784 7 + 497342 500762 -chrX 503943 507348 HC_gene_4785 2 + 503943 507348 -chrX 507705 510170 HC_gene_4786 14 + 507705 510152 -chrX 513412 513902 LC_gene_4787 1 + 513412 513902 -chrX 514030 516436 HC_gene_4788 44 + 514030 516387 -chrX 516575 516921 MC_gene_4789 1 + 516575 516921 -chrX 518653 519568 HC_gene_4790 2 + 518653 519568 -chrX 522019 523997 HC_gene_4791 26 + 522019 523943 -chrX 524315 524638 LC_gene_4792 1 + 524315 524638 -chrX 524661 524887 LC_gene_4793 1 + 524661 524887 -chrX 524932 526232 LC_gene_4794 1 + 524932 526232 -chrX 526167 527049 HC_gene_4795 219 + 526167 526841 -chrX 528684 529704 HC_gene_4796 11 + 528684 529704 -chrX 529846 531762 HC_gene_4797 85 + 529846 531714 -chrX 532054 533829 HC_gene_4798 29 + 532054 533820 -chrX 533974 537746 HC_gene_4799 52 + 533974 537719 -chrX 538760 539705 HC_gene_4800 27 + 538760 539683 -chrX 539974 540576 MC_gene_4801 1 + 539974 540575 -chrX 541582 542571 LC_gene_4802 1 + 541582 542571 -chrX 544037 545026 HC_gene_4803 106 + 544037 544784 -chrX 545713 548532 MC_gene_4804 8 + 545713 548462 -chrX 548708 550427 HC_gene_4805 6 + 548708 550427 -chrX 550373 553468 HC_gene_4806 1 + 550373 553468 -chrX 555176 555823 HC_gene_4807 266 + 555176 555689 -chrX 555876 557878 HC_gene_4808 290 + 555876 557755 -chrX 559394 561766 MC_gene_4809 1 + 559394 561658 -chrX 562984 565442 MC_gene_4810 2 + 562984 565442 -chrX 565412 567134 HC_gene_4811 10 + 565412 566944 -chrX 567601 569558 HC_gene_4812 75 + 567601 569558 -chrX 571056 572324 LC_gene_4813 1 + 571056 572321 -chrX 572324 572837 LC_gene_4814 1 + 572324 572605 -chrX 573175 573886 HC_gene_4815 53 + 573175 573886 -chrX 573919 575525 HC_gene_4816 158 + 573919 575446 -chrX 576880 577088 HC_gene_4817 14 + 576880 577088 -chrX 577099 578824 MC_gene_4818 1 + 577099 578824 -chrX 579520 580440 HC_gene_4819 14 + 579520 580440 -chrX 581360 582216 MC_gene_4820 1 + 581360 581830 -chrX 582581 582962 MC_gene_4821 1 + 582581 582960 -chrX 583692 585914 HC_gene_4822 43 + 583692 585912 -chrX 586037 587493 HC_gene_4823 50 + 586037 587435 -chrX 587626 590750 HC_gene_4824 6 + 587626 590652 -chrX 594879 596172 MC_gene_4825 1 + 594879 596172 -chrX 598683 603217 HC_gene_4826 2 + 598683 603197 -chrX 604255 604525 MC_gene_4827 1 + 604255 604525 -chrX 605467 606626 MC_gene_4828 2 + 605467 606611 -chrX 606889 607179 HC_gene_4829 1 + 606889 607169 -chrX 608283 609464 HC_gene_4830 84 + 608283 608993 -chrX 610537 611143 MC_gene_4831 1 + 610537 611143 -chrX 611163 612176 HC_gene_4832 67 + 611163 612132 -chrX 612348 613182 HC_gene_4833 39 + 612348 613120 -chrX 613223 613707 MC_gene_4834 1 + 613223 613555 -chrX 615457 616483 HC_gene_4835 59 + 615457 616357 -chrX 617153 617742 MC_gene_4836 1 + 617153 617742 -chrX 617506 617849 MC_gene_4837 1 + 617506 617843 -chrX 618136 619323 HC_gene_4838 115 + 618136 619164 -chrX 619677 620266 MC_gene_4839 1 + 619677 620266 -chrX 620564 622847 HC_gene_4840 80 + 620564 622631 -chrX 623179 624659 HC_gene_4841 691 + 623179 624648 -chrX 624679 628479 HC_gene_4842 4 + 624679 628479 -chrX 628902 629847 HC_gene_4843 12 + 628902 629795 -chrX 630816 633008 LC_gene_4844 1 + 630816 633008 -chrX 633563 635910 HC_gene_4845 13 + 633563 635849 -chrX 637024 637727 HC_gene_4846 52 + 637024 637727 -chrX 637755 638570 HC_gene_4847 120 + 637755 638278 -chrX 639288 640746 HC_gene_4848 25 + 639288 640746 -chrX 640715 641825 HC_gene_4849 31 + 640715 641825 -chrX 641975 643537 HC_gene_4850 138 + 641975 643492 -chrX 644327 644564 MC_gene_4851 1 + 644327 644564 -chrX 644812 645345 MC_gene_4852 1 + 644812 645345 -chrX 647412 649676 HC_gene_4853 821 + 647412 649514 -chrX 649707 651378 HC_gene_4854 13 + 649707 651370 -chrX 651863 653077 HC_gene_4855 7487 + 651863 652778 -chrX 654392 654779 HC_gene_4856 3 + 654392 654742 -chrX 663145 663703 LC_gene_4857 1 + 663145 663703 -chrX 663748 664717 HC_gene_4858 22 + 663748 664069 -chrX 664798 666609 MC_gene_4859 1 + 664798 666609 -chrX 665245 667244 MC_gene_4860 1 + 665245 667244 -chrX 667376 673773 HC_gene_4861 136 + 667376 673727 -chrX 676949 677613 HC_gene_4862 364 + 676949 677548 -chrX 678901 680134 LC_gene_4863 1 + 678901 680134 -chrX 680071 680728 MC_gene_4864 1 + 680071 680728 -chrX 684538 689500 HC_gene_4865 7 + 684538 689449 -chrX 690892 692335 LC_gene_4866 1 + 690892 692335 -chrX 695871 697074 HC_gene_4867 23 + 695871 697042 -chrX 697118 698411 HC_gene_4868 89 + 697118 698393 -chrX 700833 701946 HC_gene_4869 149 + 700833 701824 -chrX 704163 705635 HC_gene_4870 2 + 704163 705635 -chrX 705685 707189 HC_gene_4871 298 + 705685 707189 -chrX 707208 708773 HC_gene_4872 3 + 707208 708773 -chrX 710045 711000 MC_gene_4873 1 + 710045 711000 -chrX 717048 717996 LC_gene_4874 1 + 717048 717876 -chrX 718221 719110 HC_gene_4875 1 + 718221 718524 -chrX 719427 721487 HC_gene_4876 1 + 719427 721389 -chrX 723353 723996 MC_gene_4877 1 + 723353 723996 -chrX 724385 725019 HC_gene_4878 10 + 724385 724981 -chrX 725578 728351 HC_gene_4879 2 + 725578 728351 -chrX 727028 728355 HC_gene_4880 3 + 727028 728355 -chrX 729021 729867 LC_gene_4881 1 + 729021 729867 -chrX 730480 731848 LC_gene_4882 1 + 730480 731848 -chrX 737894 742652 LC_gene_4883 1 + 737894 742652 -chrX 400 3699 LC_gene_4884 1 - 400 3699 -chrX 16667 20705 LC_gene_4885 1 - 16667 20705 -chrX 22484 23689 LC_gene_4886 1 - 22484 23689 -chrX 24217 28342 HC_gene_4887 1 - 24217 28342 -chrX 30009 30864 MC_gene_4888 1 - 30009 30864 -chrX 30226 31093 MC_gene_4889 1 - 30226 31093 -chrX 31027 33248 MC_gene_4890 1 - 31027 33248 -chrX 33510 36277 HC_gene_4891 32 - 33544 36277 -chrX 36253 37477 MC_gene_4892 1 - 36253 37477 -chrX 37475 37661 MC_gene_4893 1 - 37475 37661 -chrX 39557 41242 HC_gene_4894 50 - 39557 41242 -chrX 41197 41862 HC_gene_4895 1 - 41197 41862 -chrX 43653 44122 HC_gene_4896 1 - 43653 44122 -chrX 45232 47445 HC_gene_4897 1 - 45264 47445 -chrX 47577 49917 HC_gene_4898 2 - 47577 49917 -chrX 49951 50453 HC_gene_4899 53 - 50025 50453 -chrX 50548 53167 HC_gene_4900 5 - 50555 53167 -chrX 54198 54873 LC_gene_4901 1 - 54198 54873 -chrX 56184 58837 HC_gene_4902 187 - 56259 58837 -chrX 59556 60169 HC_gene_4903 29 - 59629 60169 -chrX 62477 63546 LC_gene_4904 1 - 62477 63546 -chrX 67476 68806 HC_gene_4905 367 - 67714 68806 -chrX 70642 72623 LC_gene_4906 1 - 70642 72623 -chrX 72548 73420 HC_gene_4907 345 - 72548 73420 -chrX 74415 75085 HC_gene_4908 204 - 74704 75085 -chrX 74709 75319 HC_gene_4909 2835 - 74709 75319 -chrX 76520 79421 HC_gene_4910 7 - 76540 79421 -chrX 81849 83040 HC_gene_4911 10 - 81905 83040 -chrX 83330 83821 HC_gene_4912 6 - 83373 83821 -chrX 87299 88596 HC_gene_4913 49 - 87478 88596 -chrX 88898 90114 HC_gene_4914 246 - 89156 90114 -chrX 91687 94698 HC_gene_4915 30 - 91824 94698 -chrX 95983 96540 HC_gene_4916 251 - 95988 96540 -chrX 96726 97900 MC_gene_4917 2 - 96752 97900 -chrX 98901 99402 MC_gene_4918 1 - 99038 99402 -chrX 99518 100927 HC_gene_4919 105 - 99585 100927 -chrX 101112 101790 MC_gene_4920 1 - 101112 101790 -chrX 101859 104522 HC_gene_4921 39 - 102014 104522 -chrX 105692 106049 MC_gene_4922 1 - 105692 106049 -chrX 106771 109853 HC_gene_4923 37 - 106857 109853 -chrX 109753 111379 HC_gene_4924 28 - 109753 111379 -chrX 111604 113414 HC_gene_4925 9 - 111604 113414 -chrX 113745 115679 HC_gene_4926 20 - 113762 115679 -chrX 115868 116472 HC_gene_4927 1 - 115882 116472 -chrX 116611 117047 HC_gene_4928 27 - 116627 117047 -chrX 117101 117682 MC_gene_4929 1 - 117101 117682 -chrX 117825 118849 HC_gene_4930 19 - 117825 118849 -chrX 118826 119141 HC_gene_4931 11 - 118826 119141 -chrX 121038 121850 LC_gene_4932 1 - 121038 121850 -chrX 121850 122991 HC_gene_4933 2545 - 122054 122991 -chrX 123534 126397 HC_gene_4934 60 - 123686 126397 -chrX 126417 129036 HC_gene_4935 19 - 126461 129036 -chrX 129122 130822 HC_gene_4936 33 - 129123 130822 -chrX 130918 134026 HC_gene_4937 39 - 130918 134026 -chrX 136054 136807 HC_gene_4938 770 - 136298 136807 -chrX 139011 140101 HC_gene_4939 11 - 139362 140101 -chrX 140220 140903 LC_gene_4940 1 - 140220 140903 -chrX 141137 142635 HC_gene_4941 5 - 141185 142635 -chrX 142686 143692 LC_gene_4942 1 - 142821 143692 -chrX 144130 144903 HC_gene_4943 27 - 144137 144903 -chrX 145899 146795 MC_gene_4944 1 - 145899 146795 -chrX 147765 150624 HC_gene_4945 34 - 147808 150624 -chrX 150873 153083 HC_gene_4946 33 - 150873 153083 -chrX 153154 154760 HC_gene_4947 1126 - 153253 154760 -chrX 154829 156146 HC_gene_4948 9 - 154829 156146 -chrX 156256 157307 HC_gene_4949 2659 - 156288 157307 -chrX 159450 159877 HC_gene_4950 214 - 159451 159877 -chrX 160510 161655 HC_gene_4951 1 - 160510 161655 -chrX 161910 162343 MC_gene_4952 1 - 161910 162343 -chrX 164089 165380 HC_gene_4953 26 - 164140 165380 -chrX 165432 172516 HC_gene_4954 120 - 165619 172516 -chrX 172568 173041 MC_gene_4955 1 - 172670 173041 -chrX 173458 177594 HC_gene_4956 19 - 173513 177594 -chrX 177727 180740 HC_gene_4957 20 - 177786 180740 -chrX 180690 181796 HC_gene_4958 145 - 180690 181796 -chrX 181798 182475 HC_gene_4959 1 - 181798 182475 -chrX 185279 186700 HC_gene_4960 86 - 185430 186700 -chrX 186758 187811 HC_gene_4961 261 - 186895 187811 -chrX 187850 189449 HC_gene_4962 299 - 187931 189449 -chrX 190040 191103 HC_gene_4963 156 - 190301 191103 -chrX 191142 192225 HC_gene_4964 5 - 191142 192225 -chrX 193493 196026 HC_gene_4965 75 - 193493 196026 -chrX 204237 204795 LC_gene_4966 1 - 204237 204795 -chrX 209689 211662 HC_gene_4967 16 - 209724 211662 -chrX 211771 217338 HC_gene_4968 24 - 211930 217338 -chrX 217529 220085 HC_gene_4969 3 - 217529 220085 -chrX 221377 222666 LC_gene_4970 1 - 221377 222666 -chrX 223343 223487 MC_gene_4971 1 - 223343 223487 -chrX 224792 227075 HC_gene_4972 10 - 224792 227075 -chrX 227539 228479 HC_gene_4973 139 - 227956 228479 -chrX 228828 231077 HC_gene_4974 3 - 228828 231077 -chrX 234020 236508 HC_gene_4975 39 - 234108 236508 -chrX 238372 239138 HC_gene_4976 2 - 238372 239138 -chrX 245213 246147 MC_gene_4977 1 - 245213 246147 -chrX 246961 249058 MC_gene_4978 2 - 246961 249058 -chrX 251641 252740 HC_gene_4979 11 - 251678 252740 -chrX 253511 254488 HC_gene_4980 2 - 253736 254488 -chrX 254543 256799 HC_gene_4981 15 - 254583 256799 -chrX 259836 262561 HC_gene_4982 26 - 259836 262561 -chrX 262617 265114 HC_gene_4983 6 - 262687 265114 -chrX 266883 268087 MC_gene_4984 1 - 266883 268087 -chrX 267269 268119 MC_gene_4985 1 - 267269 268119 -chrX 267928 268406 MC_gene_4986 1 - 267928 268406 -chrX 269774 272589 HC_gene_4987 16 - 269784 272589 -chrX 274714 280661 HC_gene_4988 9 - 274728 280661 -chrX 283448 285285 HC_gene_4989 49 - 283639 285285 -chrX 285358 289409 HC_gene_4990 174 - 285447 289409 -chrX 289620 290939 HC_gene_4991 274 - 289697 290939 -chrX 290978 294055 HC_gene_4992 104 - 290978 294055 -chrX 294093 294901 MC_gene_4993 1 - 294093 294901 -chrX 298998 302873 HC_gene_4994 10 - 299069 302873 -chrX 304609 305900 HC_gene_4995 48 - 304629 305900 -chrX 308739 310645 HC_gene_4996 1 - 308748 310645 -chrX 310752 312713 HC_gene_4997 28 - 310829 312713 -chrX 312805 313937 HC_gene_4998 102 - 312909 313937 -chrX 313916 314895 HC_gene_4999 60 - 313916 314895 -chrX 314936 316515 HC_gene_5000 139 - 314936 316515 -chrX 316910 317310 HC_gene_5001 3 - 316945 317310 -chrX 318960 319778 HC_gene_5002 5 - 318984 319778 -chrX 322095 322987 MC_gene_5003 1 - 322095 322987 -chrX 322169 323137 MC_gene_5004 1 - 322169 323137 -chrX 323215 323524 MC_gene_5005 1 - 323215 323524 -chrX 324760 325194 HC_gene_5006 1 - 324760 325194 -chrX 326177 327919 HC_gene_5007 3 - 326177 327919 -chrX 327988 330180 HC_gene_5008 14 - 328033 330180 -chrX 330235 333149 HC_gene_5009 6 - 330256 333149 -chrX 333181 334075 MC_gene_5010 1 - 333265 334075 -chrX 335319 335568 MC_gene_5011 1 - 335319 335568 -chrX 335781 336829 LC_gene_5012 1 - 335781 336829 -chrX 337026 337602 LC_gene_5013 1 - 337095 337602 -chrX 340545 342220 HC_gene_5014 3 - 340545 342220 -chrX 347113 348663 HC_gene_5015 47 - 347113 348663 -chrX 348618 348925 HC_gene_5016 15 - 348618 348925 -chrX 348979 349357 HC_gene_5017 2 - 349235 349357 -chrX 349494 352213 HC_gene_5018 2 - 349494 352213 -chrX 355936 357720 LC_gene_5019 1 - 355936 357720 -chrX 357720 359714 HC_gene_5020 78 - 357906 359714 -chrX 361065 361637 HC_gene_5021 2 - 361065 361637 -chrX 364440 365225 LC_gene_5022 1 - 364468 365225 -chrX 368334 371440 HC_gene_5023 9 - 368373 371440 -chrX 371460 373905 HC_gene_5024 1 - 372478 373905 -chrX 374095 374333 MC_gene_5025 1 - 374095 374333 -chrX 374860 375260 MC_gene_5026 1 - 374860 375260 -chrX 375865 376947 MC_gene_5027 1 - 375865 376947 -chrX 380088 381050 HC_gene_5028 25 - 380161 381050 -chrX 386112 387505 HC_gene_5029 72 - 386112 387505 -chrX 387696 388160 LC_gene_5030 1 - 387696 388160 -chrX 388279 390855 HC_gene_5031 9 - 388283 390855 -chrX 390927 391432 MC_gene_5032 1 - 390927 391432 -chrX 391779 392726 LC_gene_5033 1 - 391779 392726 -chrX 393221 393647 LC_gene_5034 1 - 393221 393647 -chrX 395440 396614 HC_gene_5035 70 - 395542 396614 -chrX 397001 398561 HC_gene_5036 21 - 397088 398561 -chrX 398708 402503 HC_gene_5037 39 - 398779 402503 -chrX 402573 403083 MC_gene_5038 1 - 402573 403083 -chrX 404290 405122 MC_gene_5039 1 - 404290 405122 -chrX 405375 406539 LC_gene_5040 1 - 405375 406539 -chrX 406690 407318 LC_gene_5041 1 - 406942 407318 -chrX 409284 411033 HC_gene_5042 21 - 409321 411033 -chrX 411053 413434 HC_gene_5043 85 - 411153 413434 -chrX 413834 414811 HC_gene_5044 85 - 413838 414811 -chrX 416677 417283 HC_gene_5045 6 - 416677 417283 -chrX 417225 419588 HC_gene_5046 46 - 417225 419588 -chrX 419723 421710 HC_gene_5047 204 - 419753 421710 -chrX 422998 424158 HC_gene_5048 38 - 423082 424158 -chrX 424472 424854 MC_gene_5049 1 - 424515 424854 -chrX 431169 432214 HC_gene_5050 134 - 431304 432214 -chrX 432955 434956 HC_gene_5051 257 - 433108 434956 -chrX 436721 438572 MC_gene_5052 1 - 436721 438572 -chrX 440641 442565 HC_gene_5053 13 - 440641 442565 -chrX 442619 443188 HC_gene_5054 277 - 442672 443188 -chrX 445107 445688 HC_gene_5055 4 - 445330 445688 -chrX 448212 448780 MC_gene_5056 1 - 448212 448780 -chrX 449044 450593 MC_gene_5057 1 - 449044 450593 -chrX 451740 452863 MC_gene_5058 1 - 451740 452863 -chrX 452896 454729 HC_gene_5059 7892 - 453542 454729 -chrX 456106 457782 LC_gene_5060 1 - 456106 457782 -chrX 457782 458392 HC_gene_5061 88 - 457812 458392 -chrX 458568 459472 HC_gene_5062 26 - 458589 459472 -chrX 459657 460214 HC_gene_5063 65 - 459669 460214 -chrX 460283 461556 MC_gene_5064 2 - 460283 461556 -chrX 461710 462636 LC_gene_5065 1 - 461710 462636 -chrX 464067 466224 HC_gene_5066 320 - 464286 466224 -chrX 466254 467054 HC_gene_5067 237 - 466284 467054 -chrX 467097 468311 HC_gene_5068 16 - 467130 468311 -chrX 468337 469606 HC_gene_5069 19 - 468460 469606 -chrX 470008 471679 HC_gene_5070 739 - 470098 471679 -chrX 471862 472527 HC_gene_5071 3 - 472025 472527 -chrX 483757 486255 MC_gene_5072 1 - 483757 486255 -chrX 485270 490889 MC_gene_5073 6 - 485270 490889 -chrX 492291 496475 HC_gene_5074 3 - 492291 496475 -chrX 497009 497236 HC_gene_5075 4 - 497009 497236 -chrX 500622 503553 MC_gene_5076 4 - 500622 503553 -chrX 507152 507528 HC_gene_5077 1 - 507273 507528 -chrX 510034 513830 HC_gene_5078 12 - 510044 513830 -chrX 516277 517670 HC_gene_5079 39 - 516328 517670 -chrX 517728 517878 MC_gene_5080 1 - 517756 517878 -chrX 518371 519268 HC_gene_5081 232 - 518474 519268 -chrX 519308 521742 HC_gene_5082 772 - 519417 521742 -chrX 523918 524509 HC_gene_5083 16 - 523924 524509 -chrX 524823 525411 HC_gene_5084 308 - 524861 525411 -chrX 526177 528495 HC_gene_5085 42 - 526262 528495 -chrX 529037 529633 MC_gene_5086 1 - 529381 529633 -chrX 533737 534756 MC_gene_5087 1 - 533737 534756 -chrX 539477 540493 HC_gene_5088 14 - 539510 540493 -chrX 540540 540923 MC_gene_5089 1 - 540540 540923 -chrX 541584 542648 HC_gene_5090 43 - 541650 542648 -chrX 543118 543469 MC_gene_5091 1 - 543165 543469 -chrX 543373 543865 MC_gene_5092 1 - 543373 543865 -chrX 544563 545433 HC_gene_5093 201 - 544683 545433 -chrX 546949 547320 MC_gene_5094 1 - 546949 547320 -chrX 547345 547892 MC_gene_5095 1 - 547372 547892 -chrX 547892 549185 MC_gene_5096 1 - 548373 549185 -chrX 551449 551676 LC_gene_5097 1 - 551451 551676 -chrX 552783 554852 HC_gene_5098 11 - 552819 554852 -chrX 557452 559179 HC_gene_5099 309 - 557507 559179 -chrX 564573 565211 MC_gene_5100 1 - 564573 565211 -chrX 566076 567467 HC_gene_5101 110 - 566076 567467 -chrX 568502 569437 HC_gene_5102 131 - 568663 569437 -chrX 569487 570641 HC_gene_5103 319 - 569487 570641 -chrX 570666 572156 HC_gene_5104 133 - 570666 572156 -chrX 572196 572966 HC_gene_5105 155 - 572196 572966 -chrX 573150 573741 LC_gene_5106 1 - 573277 573741 -chrX 574212 574843 LC_gene_5107 1 - 574212 574843 -chrX 575264 576926 HC_gene_5108 122 - 575264 576926 -chrX 576978 578238 HC_gene_5109 622 - 577106 578238 -chrX 580284 581646 HC_gene_5110 70 - 580286 581646 -chrX 581712 583561 HC_gene_5111 146 - 581712 583561 -chrX 584185 584890 MC_gene_5112 1 - 584185 584890 -chrX 584890 585477 HC_gene_5113 391 - 585022 585477 -chrX 586124 587406 HC_gene_5114 131 - 586225 587406 -chrX 587406 587598 MC_gene_5115 1 - 587406 587598 -chrX 590579 594604 HC_gene_5116 12 - 590769 594604 -chrX 594654 598363 HC_gene_5117 32 - 594780 598363 -chrX 598642 599639 LC_gene_5118 1 - 598642 599639 -chrX 602239 604262 HC_gene_5119 34 - 602239 604262 -chrX 604404 605798 HC_gene_5120 16 - 604404 605798 -chrX 605933 607211 MC_gene_5121 2 - 605933 607211 -chrX 606459 607255 MC_gene_5122 1 - 606459 607255 -chrX 607378 607737 MC_gene_5123 1 - 607391 607737 -chrX 610500 610848 MC_gene_5124 1 - 610500 610848 -chrX 610873 610986 MC_gene_5125 1 - 610873 610986 -chrX 612991 615230 HC_gene_5126 1 - 613013 615230 -chrX 616247 617638 HC_gene_5127 66 - 616265 617638 -chrX 618045 618911 LC_gene_5128 1 - 618045 618911 -chrX 619014 619876 HC_gene_5129 41 - 619034 619876 -chrX 619927 620615 HC_gene_5130 4 - 620145 620615 -chrX 622010 623314 HC_gene_5131 3223 - 622477 623314 -chrX 624583 625375 LC_gene_5132 1 - 624583 625375 -chrX 626796 628710 HC_gene_5133 97 - 626796 628710 -chrX 629353 632999 HC_gene_5134 91 - 629486 632999 -chrX 632923 633135 HC_gene_5135 1 - 632923 633135 -chrX 635664 636831 HC_gene_5136 64 - 635751 636831 -chrX 637979 639388 HC_gene_5137 103 - 638158 639388 -chrX 639822 640432 MC_gene_5138 1 - 639822 640432 -chrX 640543 641374 MC_gene_5139 1 - 640543 641374 -chrX 640653 641749 MC_gene_5140 2 - 640653 641749 -chrX 643160 644145 HC_gene_5141 143 - 643385 644145 -chrX 644262 646524 HC_gene_5142 9 - 644262 646524 -chrX 650604 650949 MC_gene_5143 1 - 650721 650949 -chrX 652606 654506 HC_gene_5144 30 - 652697 654506 -chrX 654564 656011 HC_gene_5145 79 - 654628 656011 -chrX 656063 658651 HC_gene_5146 60 - 656163 658651 -chrX 658745 662837 HC_gene_5147 10 - 658839 662837 -chrX 663633 665066 HC_gene_5148 3 - 663664 665066 -chrX 665044 667200 HC_gene_5149 53 - 665044 667200 -chrX 668497 669283 MC_gene_5150 1 - 668501 669283 -chrX 671647 672258 LC_gene_5151 1 - 671647 672258 -chrX 673450 676778 HC_gene_5152 35 - 673656 676778 -chrX 677344 678705 HC_gene_5153 14 - 677350 678705 -chrX 678799 683329 HC_gene_5154 5 - 678814 683329 -chrX 689317 690588 HC_gene_5155 477 - 689317 690588 -chrX 690533 695757 HC_gene_5156 2 - 690533 695757 -chrX 697993 700665 HC_gene_5157 91 - 698195 700665 -chrX 701564 703102 HC_gene_5158 2811 - 701936 703102 -chrX 703126 705270 HC_gene_5159 23 - 703126 705270 -chrX 708638 709736 MC_gene_5160 1 - 708638 709736 -chrX 712026 717591 HC_gene_5161 1 - 712026 717591 -chrX 718428 719203 HC_gene_5162 1 - 718428 719203 -chrX 722016 725339 HC_gene_5163 16 - 722016 725339 -chrX 728425 729219 HC_gene_5164 15 - 728425 729219 -chrX 730582 732676 LC_gene_5165 1 - 730582 732676 -chrX 737434 742369 LC_gene_5166 1 - 737434 742369 -chrX 742215 743902 HC_gene_5167 1 - 742215 743902 -chrXI 5674 6172 HC_gene_5168 4 + 5674 6172 -chrXI 6646 7650 LC_gene_5169 1 + 6646 7650 -chrXI 8196 8790 MC_gene_5170 1 + 8196 8790 -chrXI 11856 12036 MC_gene_5171 1 + 11856 12036 -chrXI 13717 14296 MC_gene_5172 1 + 13717 14296 -chrXI 14530 15789 HC_gene_5173 20 + 14530 15789 -chrXI 16217 17184 LC_gene_5174 1 + 16217 17184 -chrXI 18091 18404 MC_gene_5175 1 + 18091 18404 -chrXI 18656 19721 HC_gene_5176 5 + 18656 19721 -chrXI 19780 21221 HC_gene_5177 2 + 19780 21221 -chrXI 21224 24224 HC_gene_5178 9 + 21224 24224 -chrXI 25181 26807 HC_gene_5179 420 + 25181 26696 -chrXI 30916 31436 LC_gene_5180 1 + 30916 31435 -chrXI 31465 31928 LC_gene_5181 1 + 31465 31928 -chrXI 34416 36659 HC_gene_5182 154 + 34416 36659 -chrXI 36655 38442 LC_gene_5183 1 + 36655 38434 -chrXI 38641 42392 HC_gene_5184 289 + 38641 42334 -chrXI 46960 48108 HC_gene_5185 17 + 46960 48038 -chrXI 48161 49277 HC_gene_5186 245 + 48161 49009 -chrXI 50018 51662 HC_gene_5187 12 + 50018 50865 -chrXI 51662 52393 MC_gene_5188 1 + 51662 52393 -chrXI 52070 52639 MC_gene_5189 1 + 52070 52474 -chrXI 52659 53639 HC_gene_5190 20 + 52659 53477 -chrXI 53668 55919 HC_gene_5191 63 + 53668 55777 -chrXI 65959 66467 LC_gene_5192 1 + 65959 66467 -chrXI 66490 67766 HC_gene_5193 10 + 66490 67766 -chrXI 69797 70525 MC_gene_5194 1 + 69797 70525 -chrXI 70762 72989 MC_gene_5195 1 + 70762 72989 -chrXI 74022 74351 HC_gene_5196 3 + 74022 74351 -chrXI 74626 74874 MC_gene_5197 1 + 74626 74857 -chrXI 75785 77368 HC_gene_5198 244 + 75785 77162 -chrXI 80123 80948 MC_gene_5199 1 + 80123 80948 -chrXI 81003 82876 HC_gene_5200 66 + 81003 82727 -chrXI 82907 84027 HC_gene_5201 262 + 82907 84027 -chrXI 84603 86039 HC_gene_5202 23 + 84603 86039 -chrXI 88733 89230 HC_gene_5203 3 + 88733 89230 -chrXI 92312 93399 MC_gene_5204 1 + 92312 93399 -chrXI 94144 96477 HC_gene_5205 84 + 94144 96379 -chrXI 96603 98508 HC_gene_5206 60 + 96603 98443 -chrXI 98549 99954 HC_gene_5207 41 + 98549 99777 -chrXI 100152 100789 HC_gene_5208 11 + 100152 100594 -chrXI 101223 104890 HC_gene_5209 1 + 101223 101765 -chrXI 104910 107066 HC_gene_5210 453 + 104910 106913 -chrXI 107139 108973 HC_gene_5211 414 + 107139 108878 -chrXI 109247 110377 HC_gene_5212 3362 + 109247 110377 -chrXI 110305 111678 LC_gene_5213 1 + 110305 111678 -chrXI 113034 113399 LC_gene_5214 1 + 113034 113399 -chrXI 115104 115644 HC_gene_5215 16 + 115104 115644 -chrXI 118745 120598 HC_gene_5216 74 + 118745 120408 -chrXI 122487 125693 HC_gene_5217 8 + 122487 125669 -chrXI 125728 127306 HC_gene_5218 408 + 125728 127156 -chrXI 127390 130374 HC_gene_5219 3 + 127390 130357 -chrXI 130559 131457 HC_gene_5220 137 + 130559 131190 -chrXI 133427 133752 MC_gene_5221 1 + 133427 133752 -chrXI 133668 133952 MC_gene_5222 1 + 133668 133952 -chrXI 136334 137955 HC_gene_5223 2 + 136334 137953 -chrXI 137988 139766 MC_gene_5224 1 + 137988 139766 -chrXI 141612 142891 LC_gene_5225 1 + 141612 142891 -chrXI 143293 144464 HC_gene_5226 26 + 143293 144436 -chrXI 145745 146892 MC_gene_5227 1 + 145745 146892 -chrXI 151168 152936 HC_gene_5228 9 + 151168 152936 -chrXI 153249 154892 HC_gene_5229 162 + 153249 154892 -chrXI 154585 158486 HC_gene_5230 48 + 154585 158469 -chrXI 158593 159846 HC_gene_5231 2315 + 158593 159444 -chrXI 161519 162488 HC_gene_5232 115 + 161519 162410 -chrXI 162730 163134 MC_gene_5233 1 + 162730 163134 -chrXI 164165 164910 MC_gene_5234 1 + 164165 164910 -chrXI 164930 166047 HC_gene_5235 3 + 164930 166047 -chrXI 166312 167688 HC_gene_5236 360 + 166312 167574 -chrXI 169058 169728 LC_gene_5237 1 + 169058 169728 -chrXI 171626 174043 HC_gene_5238 49 + 171626 173948 -chrXI 174188 176539 HC_gene_5239 302 + 174188 176539 -chrXI 176725 179483 HC_gene_5240 281 + 176725 179317 -chrXI 179638 180415 HC_gene_5241 226 + 179638 180367 -chrXI 180527 182650 HC_gene_5242 47 + 180527 182572 -chrXI 182779 184804 HC_gene_5243 29 + 182779 184600 -chrXI 184804 185366 MC_gene_5244 1 + 184804 185311 -chrXI 185895 186553 HC_gene_5245 148 + 185895 186491 -chrXI 188980 190669 MC_gene_5246 1 + 188980 190669 -chrXI 191695 192652 LC_gene_5247 1 + 191695 192652 -chrXI 192908 193178 MC_gene_5248 1 + 192908 193178 -chrXI 195208 196379 HC_gene_5249 15 + 195208 196367 -chrXI 196379 197650 LC_gene_5250 1 + 196379 197650 -chrXI 200441 201292 HC_gene_5251 6 + 200441 200718 -chrXI 202045 202924 MC_gene_5252 2 + 202045 202924 -chrXI 202916 203418 MC_gene_5253 1 + 202916 203083 -chrXI 203499 205468 HC_gene_5254 121 + 203499 205397 -chrXI 205497 207862 HC_gene_5255 60 + 205497 207823 -chrXI 208162 209182 HC_gene_5256 41 + 208162 208983 -chrXI 209315 210410 HC_gene_5257 8 + 209315 210304 -chrXI 210467 212512 HC_gene_5258 18 + 210467 212512 -chrXI 212656 213700 LC_gene_5259 1 + 212656 213700 -chrXI 213925 216821 HC_gene_5260 3 + 213925 216821 -chrXI 217265 218983 HC_gene_5261 99 + 217265 218449 -chrXI 219418 219828 MC_gene_5262 1 + 219418 219828 -chrXI 220269 221409 HC_gene_5263 855 + 220269 221197 -chrXI 223620 224857 LC_gene_5264 1 + 223620 224694 -chrXI 225023 225878 LC_gene_5265 1 + 225023 225878 -chrXI 226501 229146 HC_gene_5266 17 + 226501 228907 -chrXI 229464 229721 LC_gene_5267 1 + 229464 229721 -chrXI 230278 230713 HC_gene_5268 9 + 230278 230713 -chrXI 231317 231866 HC_gene_5269 6 + 231317 231866 -chrXI 231886 234256 HC_gene_5270 120 + 231886 234256 -chrXI 234404 235908 HC_gene_5271 17 + 234404 235859 -chrXI 236180 237132 MC_gene_5272 1 + 236180 237132 -chrXI 237434 239097 HC_gene_5273 32 + 237434 239013 -chrXI 240441 241286 MC_gene_5274 1 + 240441 241286 -chrXI 242822 243100 MC_gene_5275 1 + 242822 243100 -chrXI 244584 244959 LC_gene_5276 1 + 244584 244959 -chrXI 245765 246028 MC_gene_5277 1 + 245765 246028 -chrXI 246171 247815 HC_gene_5278 2 + 246171 247815 -chrXI 248657 249663 HC_gene_5279 1 + 248657 248884 -chrXI 250826 253574 HC_gene_5280 32 + 250826 253526 -chrXI 255701 256086 LC_gene_5281 1 + 255701 256086 -chrXI 256742 258013 HC_gene_5282 31 + 256742 257929 -chrXI 259203 260207 HC_gene_5283 14984 + 259203 259703 -chrXI 261088 262069 HC_gene_5284 252 + 261088 261959 -chrXI 262093 264487 HC_gene_5285 203 + 262093 264383 -chrXI 264726 265962 HC_gene_5286 1 + 264726 265962 -chrXI 269673 269987 MC_gene_5287 1 + 269673 269936 -chrXI 269987 270921 LC_gene_5288 1 + 269987 270921 -chrXI 270980 271741 MC_gene_5289 1 + 270980 271741 -chrXI 271852 273390 HC_gene_5290 18 + 271852 273390 -chrXI 273363 277410 HC_gene_5291 92 + 273363 277169 -chrXI 278261 278757 MC_gene_5292 2 + 278261 278757 -chrXI 278766 281056 HC_gene_5293 388 + 278766 281021 -chrXI 282864 284881 HC_gene_5294 2478 + 282864 284675 -chrXI 284923 286429 HC_gene_5295 449 + 284923 286261 -chrXI 286508 288688 HC_gene_5296 31 + 286508 288651 -chrXI 288821 291143 HC_gene_5297 8 + 288821 291143 -chrXI 291387 293046 HC_gene_5298 140 + 291387 292948 -chrXI 294772 295678 LC_gene_5299 1 + 294772 295678 -chrXI 296394 298354 HC_gene_5300 1 + 296394 297506 -chrXI 298406 302460 HC_gene_5301 58 + 298406 302460 -chrXI 304896 306980 HC_gene_5302 11 + 304896 306980 -chrXI 307275 308135 HC_gene_5303 48 + 307275 307892 -chrXI 309160 310057 HC_gene_5304 319 + 309160 309777 -chrXI 310077 313388 HC_gene_5305 22 + 310077 313243 -chrXI 314757 315594 HC_gene_5306 701 + 314757 315475 -chrXI 315614 316244 HC_gene_5307 1 + 315614 316244 -chrXI 315909 316346 HC_gene_5308 8 + 315909 316346 -chrXI 316401 316957 MC_gene_5309 1 + 316401 316957 -chrXI 317595 318174 HC_gene_5310 3 + 317595 318136 -chrXI 319011 321453 HC_gene_5311 31 + 319011 321453 -chrXI 321833 323049 MC_gene_5312 2 + 321833 323049 -chrXI 323121 325550 HC_gene_5313 67 + 323121 325545 -chrXI 325752 326360 HC_gene_5314 133 + 325752 326360 -chrXI 327664 328114 LC_gene_5315 1 + 327664 328114 -chrXI 328145 328904 HC_gene_5316 2 + 328145 328583 -chrXI 328904 329235 LC_gene_5317 1 + 328904 329160 -chrXI 330134 331046 HC_gene_5318 298 + 330134 330794 -chrXI 335565 336407 LC_gene_5319 1 + 335565 336407 -chrXI 339163 339725 HC_gene_5320 10 + 339163 339711 -chrXI 340868 341325 HC_gene_5321 14 + 340868 341325 -chrXI 341289 343031 HC_gene_5322 141 + 341289 342796 -chrXI 347028 347275 MC_gene_5323 1 + 347028 347275 -chrXI 349433 351189 HC_gene_5324 30 + 349433 351121 -chrXI 353424 355253 HC_gene_5325 45 + 353424 355220 -chrXI 356285 358209 HC_gene_5326 83 + 356285 358040 -chrXI 358335 359906 HC_gene_5327 36 + 358335 359763 -chrXI 360047 361153 HC_gene_5328 103 + 360047 361104 -chrXI 362133 364482 HC_gene_5329 116 + 362133 364386 -chrXI 364658 365349 MC_gene_5330 1 + 364658 365349 -chrXI 365368 369320 HC_gene_5331 3 + 365368 369309 -chrXI 369818 371663 HC_gene_5332 341 + 369818 371560 -chrXI 371726 374181 HC_gene_5333 19 + 371726 374177 -chrXI 374427 375387 HC_gene_5334 357 + 374427 375359 -chrXI 375448 379187 HC_gene_5335 5 + 375448 379187 -chrXI 379899 380019 MC_gene_5336 1 + 379899 380019 -chrXI 381553 382668 MC_gene_5337 1 + 381553 382649 -chrXI 383660 383966 LC_gene_5338 1 + 383660 383966 -chrXI 385712 387515 HC_gene_5339 33 + 385712 387515 -chrXI 386446 387517 HC_gene_5340 27 + 386446 387517 -chrXI 387503 389226 HC_gene_5341 53 + 387503 389138 -chrXI 389251 389928 MC_gene_5342 1 + 389251 389902 -chrXI 389948 390332 HC_gene_5343 4 + 389948 390332 -chrXI 393687 395912 HC_gene_5344 65 + 393687 395912 -chrXI 402355 403681 HC_gene_5345 80 + 402355 403601 -chrXI 404075 405365 HC_gene_5346 53 + 404075 405243 -chrXI 408444 411658 HC_gene_5347 6 + 408444 411588 -chrXI 417176 417452 MC_gene_5348 1 + 417176 417452 -chrXI 418248 420542 HC_gene_5349 44 + 418248 420157 -chrXI 426205 427320 HC_gene_5350 332 + 426205 427047 -chrXI 429271 430438 HC_gene_5351 250 + 429271 430249 -chrXI 430824 431372 MC_gene_5352 1 + 430824 431372 -chrXI 430891 431499 MC_gene_5353 1 + 430891 431492 -chrXI 431885 433196 HC_gene_5354 4872 + 431885 432812 -chrXI 433196 433616 MC_gene_5355 1 + 433196 433616 -chrXI 435227 437103 HC_gene_5356 114 + 435227 436890 -chrXI 437699 438937 HC_gene_5357 175 + 437699 438776 -chrXI 439781 440209 MC_gene_5358 1 + 439781 440209 -chrXI 443041 445007 HC_gene_5359 37 + 443041 444996 -chrXI 445326 447326 HC_gene_5360 64 + 445326 446920 -chrXI 447346 447700 HC_gene_5361 1 + 447346 447700 -chrXI 448216 448428 MC_gene_5362 1 + 448216 448428 -chrXI 451415 452132 HC_gene_5363 92 + 451415 452081 -chrXI 452172 454310 HC_gene_5364 43 + 452172 454171 -chrXI 455709 457189 HC_gene_5365 1 + 455709 457189 -chrXI 458006 458306 LC_gene_5366 1 + 458006 458306 -chrXI 458582 458806 MC_gene_5367 1 + 458582 458806 -chrXI 461598 462820 HC_gene_5368 7 + 461598 462791 -chrXI 463732 465415 HC_gene_5369 248 + 463732 465260 -chrXI 465822 466179 LC_gene_5370 1 + 465822 466179 -chrXI 466419 468761 HC_gene_5371 7 + 466419 468761 -chrXI 469684 471617 HC_gene_5372 58 + 469684 471569 -chrXI 472401 474146 LC_gene_5373 1 + 472401 474146 -chrXI 475669 476427 MC_gene_5374 1 + 475669 476241 -chrXI 478319 482122 HC_gene_5375 67 + 478319 482109 -chrXI 483369 485142 HC_gene_5376 22 + 483369 485142 -chrXI 487737 488844 HC_gene_5377 144 + 487737 488721 -chrXI 489884 490578 MC_gene_5378 2 + 489884 490388 -chrXI 490990 491188 MC_gene_5379 1 + 490990 491127 -chrXI 491284 494213 HC_gene_5380 4 + 491284 494213 -chrXI 493880 497716 HC_gene_5381 58 + 493880 497486 -chrXI 500058 501239 HC_gene_5382 99 + 500058 501215 -chrXI 507166 507757 LC_gene_5383 1 + 507166 507757 -chrXI 507920 508913 HC_gene_5384 155 + 507920 508727 -chrXI 510964 512026 MC_gene_5385 1 + 510964 512026 -chrXI 514783 516942 HC_gene_5386 12 + 514783 516942 -chrXI 517252 517920 LC_gene_5387 1 + 517252 517751 -chrXI 518177 521218 HC_gene_5388 3781 + 518177 520858 -chrXI 521944 523461 HC_gene_5389 22 + 521944 523416 -chrXI 524152 525484 HC_gene_5390 70 + 524152 525375 -chrXI 526864 530546 HC_gene_5391 6 + 526864 530531 -chrXI 530827 532346 HC_gene_5392 30 + 530827 532346 -chrXI 533577 535536 HC_gene_5393 44 + 533577 535536 -chrXI 548172 549448 HC_gene_5394 20 + 548172 549397 -chrXI 549540 551565 HC_gene_5395 19 + 549540 551450 -chrXI 551610 552576 HC_gene_5396 968 + 551610 552443 -chrXI 552710 554790 HC_gene_5397 14 + 552710 554733 -chrXI 554957 556460 HC_gene_5398 728 + 554957 556460 -chrXI 556485 559037 HC_gene_5399 35 + 556485 559037 -chrXI 557575 559154 HC_gene_5400 55 + 557575 559141 -chrXI 559600 562423 HC_gene_5401 61 + 559600 562423 -chrXI 562512 565285 HC_gene_5402 11 + 562512 565270 -chrXI 567829 570352 HC_gene_5403 13 + 567829 570331 -chrXI 570391 570867 HC_gene_5404 8 + 570391 570867 -chrXI 571457 573465 HC_gene_5405 15 + 571457 573443 -chrXI 573568 574847 HC_gene_5406 78 + 573568 574757 -chrXI 576270 576605 HC_gene_5407 3 + 576270 576489 -chrXI 578473 578901 MC_gene_5408 1 + 578473 578901 -chrXI 578999 579186 MC_gene_5409 1 + 578999 579186 -chrXI 579215 580018 HC_gene_5410 283 + 579215 579803 -chrXI 580404 580971 HC_gene_5411 10 + 580404 580833 -chrXI 581594 582099 HC_gene_5412 1 + 581594 582099 -chrXI 581986 583450 HC_gene_5413 14 + 581986 583450 -chrXI 583626 584890 HC_gene_5414 50 + 583626 584820 -chrXI 584941 586768 HC_gene_5415 8 + 584941 586757 -chrXI 590330 591622 HC_gene_5416 245 + 590330 591508 -chrXI 592775 596396 HC_gene_5417 22 + 592775 596345 -chrXI 596628 596989 HC_gene_5418 2 + 596628 596989 -chrXI 599831 601605 HC_gene_5419 3 + 599831 601543 -chrXI 601925 603585 HC_gene_5420 11 + 601925 603585 -chrXI 604191 604445 MC_gene_5421 1 + 604191 604445 -chrXI 606207 607304 MC_gene_5422 1 + 606207 607304 -chrXI 608791 611294 HC_gene_5423 17 + 608791 611264 -chrXI 611321 612530 HC_gene_5424 93 + 611321 612530 -chrXI 614643 615569 MC_gene_5425 1 + 614643 615569 -chrXI 615634 617967 HC_gene_5426 44 + 615634 617730 -chrXI 618882 619546 MC_gene_5427 1 + 618882 619532 -chrXI 619647 621853 HC_gene_5428 2 + 619647 621370 -chrXI 621873 625638 HC_gene_5429 144 + 621873 625622 -chrXI 625852 626452 HC_gene_5430 133 + 625852 626329 -chrXI 626549 630740 HC_gene_5431 10 + 626549 630487 -chrXI 630793 631104 MC_gene_5432 1 + 630793 631104 -chrXI 631174 633034 MC_gene_5433 1 + 631174 633034 -chrXI 635566 638411 MC_gene_5434 1 + 635566 638400 -chrXI 640520 642738 HC_gene_5435 10 + 640520 642738 -chrXI 642952 650006 HC_gene_5436 1 + 642952 650006 -chrXI 650497 658074 HC_gene_5437 12 + 650497 658074 -chrXI 658553 660585 LC_gene_5438 1 + 658553 660585 -chrXI 660781 661405 MC_gene_5439 1 + 660781 661405 -chrXI 662649 665274 MC_gene_5440 2 + 662649 665274 -chrXI 3263 5738 HC_gene_5441 4 - 3263 5738 -chrXI 6004 7813 MC_gene_5442 1 - 6004 7813 -chrXI 8766 11237 HC_gene_5443 1 - 8766 11237 -chrXI 11249 11527 HC_gene_5444 1 - 11249 11527 -chrXI 13378 14400 HC_gene_5445 1 - 13378 14400 -chrXI 17054 18790 HC_gene_5446 95 - 17054 18790 -chrXI 21125 24138 HC_gene_5447 1 - 21125 24138 -chrXI 26552 30737 HC_gene_5448 14 - 26554 30737 -chrXI 30978 31762 HC_gene_5449 88 - 31012 31762 -chrXI 31867 34129 HC_gene_5450 42 - 31880 34129 -chrXI 36515 38174 HC_gene_5451 68 - 36515 38174 -chrXI 38346 38900 LC_gene_5452 1 - 38369 38900 -chrXI 42100 45440 HC_gene_5453 10 - 42245 45440 -chrXI 46828 47216 LC_gene_5454 1 - 46876 47216 -chrXI 48767 49844 HC_gene_5455 108 - 48935 49844 -chrXI 53391 53703 MC_gene_5456 1 - 53391 53703 -chrXI 55828 56532 HC_gene_5457 8 - 55831 56532 -chrXI 61411 63525 MC_gene_5458 1 - 61454 63525 -chrXI 63599 67512 HC_gene_5459 49 - 63710 67512 -chrXI 67963 70395 HC_gene_5460 3 - 68092 70395 -chrXI 70256 70519 HC_gene_5461 2 - 70256 70519 -chrXI 70429 73884 HC_gene_5462 4 - 70429 73884 -chrXI 74690 75582 HC_gene_5463 379 - 74782 75582 -chrXI 77039 78665 HC_gene_5464 15 - 77039 78665 -chrXI 78750 79914 HC_gene_5465 35 - 78754 79914 -chrXI 79984 80576 HC_gene_5466 612 - 80020 80576 -chrXI 85939 88998 HC_gene_5467 6 - 85939 88998 -chrXI 89118 91140 MC_gene_5468 2 - 89118 91140 -chrXI 91464 93650 HC_gene_5469 159 - 91464 93650 -chrXI 94030 94408 HC_gene_5470 2 - 94030 94408 -chrXI 95540 96325 MC_gene_5471 1 - 95540 96325 -chrXI 98353 99201 MC_gene_5472 1 - 98353 99201 -chrXI 98445 99662 MC_gene_5473 2 - 98445 99662 -chrXI 100458 100972 LC_gene_5474 1 - 100458 100972 -chrXI 106437 107659 LC_gene_5475 1 - 106813 107659 -chrXI 110155 112508 HC_gene_5476 71 - 110155 112508 -chrXI 112942 114207 HC_gene_5477 35 - 112942 114207 -chrXI 115117 118522 HC_gene_5478 26 - 115406 118522 -chrXI 120227 122300 HC_gene_5479 30 - 120288 122300 -chrXI 127817 130312 HC_gene_5480 1 - 127817 130312 -chrXI 131101 133473 HC_gene_5481 9 - 131101 133473 -chrXI 133511 134391 HC_gene_5482 101 - 133559 134391 -chrXI 134287 135860 HC_gene_5483 46 - 134287 135860 -chrXI 135913 137096 HC_gene_5484 4 - 136033 137096 -chrXI 137116 137625 HC_gene_5485 10 - 137236 137625 -chrXI 137675 140731 HC_gene_5486 14 - 137751 140731 -chrXI 140824 141089 MC_gene_5487 1 - 140824 141089 -chrXI 141160 141490 MC_gene_5488 1 - 141193 141490 -chrXI 141510 143108 HC_gene_5489 746 - 141531 143108 -chrXI 143589 143954 HC_gene_5490 1 - 143589 143954 -chrXI 144099 144914 LC_gene_5491 1 - 144099 144914 -chrXI 145571 146131 MC_gene_5492 1 - 145571 146131 -chrXI 147485 148872 HC_gene_5493 7 - 147485 148872 -chrXI 149030 152552 HC_gene_5494 11 - 149030 152552 -chrXI 152599 153008 HC_gene_5495 2 - 152802 153008 -chrXI 153531 154790 HC_gene_5496 48 - 153600 154790 -chrXI 155142 155492 MC_gene_5497 1 - 155245 155492 -chrXI 157196 158311 MC_gene_5498 2 - 157196 158311 -chrXI 159374 161341 HC_gene_5499 24 - 159391 161341 -chrXI 162293 162549 MC_gene_5500 1 - 162305 162549 -chrXI 163009 163386 HC_gene_5501 3 - 163009 163386 -chrXI 163420 164409 HC_gene_5502 10743 - 163508 164409 -chrXI 164795 165943 HC_gene_5503 67 - 164810 165943 -chrXI 165918 166250 HC_gene_5504 14 - 165918 166250 -chrXI 167472 168854 HC_gene_5505 17 - 167484 168854 -chrXI 168972 171531 HC_gene_5506 54 - 168972 171531 -chrXI 171732 173251 LC_gene_5507 1 - 171732 173251 -chrXI 175431 176494 HC_gene_5508 60 - 175609 176494 -chrXI 179192 179446 HC_gene_5509 12 - 179192 179446 -chrXI 184332 185034 HC_gene_5510 125 - 184564 185034 -chrXI 185115 185936 HC_gene_5511 193 - 185210 185936 -chrXI 186260 188771 HC_gene_5512 26 - 186323 188771 -chrXI 188853 191495 HC_gene_5513 3 - 188861 191495 -chrXI 191598 193084 HC_gene_5514 6 - 191605 193084 -chrXI 193298 194940 HC_gene_5515 8 - 193307 194940 -chrXI 195072 196079 HC_gene_5516 88 - 195159 196079 -chrXI 196233 198151 HC_gene_5517 24 - 196287 198151 -chrXI 198817 200216 LC_gene_5518 1 - 198860 200216 -chrXI 200543 201931 HC_gene_5519 92 - 200720 201931 -chrXI 202341 202747 MC_gene_5520 1 - 202341 202747 -chrXI 203976 204981 HC_gene_5521 1 - 203976 204981 -chrXI 207192 207815 LC_gene_5522 1 - 207192 207815 -chrXI 210229 211515 LC_gene_5523 1 - 210229 211515 -chrXI 212187 213033 HC_gene_5524 403 - 212322 213033 -chrXI 217125 217667 LC_gene_5525 1 - 217125 217667 -chrXI 218315 219272 HC_gene_5526 96 - 218420 219272 -chrXI 219401 219650 LC_gene_5527 1 - 219401 219650 -chrXI 221012 223092 HC_gene_5528 36 - 221040 223092 -chrXI 223174 224484 HC_gene_5529 117 - 223174 224484 -chrXI 224543 225925 HC_gene_5530 57 - 224617 225925 -chrXI 228634 230314 HC_gene_5531 53 - 228773 230314 -chrXI 230885 231751 LC_gene_5532 1 - 230885 231751 -chrXI 233143 233578 MC_gene_5533 1 - 233211 233578 -chrXI 233578 234067 MC_gene_5534 1 - 233641 234067 -chrXI 233928 234197 MC_gene_5535 1 - 233928 234197 -chrXI 235798 237042 MC_gene_5536 1 - 235798 237042 -chrXI 238542 242782 MC_gene_5537 4 - 238542 242782 -chrXI 242849 245576 HC_gene_5538 169 - 242987 245576 -chrXI 245944 247876 HC_gene_5539 78 - 245950 247876 -chrXI 253416 255484 HC_gene_5540 64 - 253453 255484 -chrXI 255535 256516 HC_gene_5541 119 - 255667 256516 -chrXI 257861 258349 MC_gene_5542 1 - 257870 258349 -chrXI 259582 260309 HC_gene_5543 7 - 259582 260309 -chrXI 260640 261058 MC_gene_5544 1 - 260640 261058 -chrXI 264144 265975 HC_gene_5545 14 - 264280 265975 -chrXI 265925 269535 HC_gene_5546 12 - 265925 269535 -chrXI 269579 270678 HC_gene_5547 46 - 269613 270678 -chrXI 270745 271659 HC_gene_5548 13 - 270756 271659 -chrXI 271582 273154 HC_gene_5549 3 - 271582 273154 -chrXI 274487 275021 LC_gene_5550 1 - 274487 275021 -chrXI 276929 277952 HC_gene_5551 107 - 276974 277952 -chrXI 278650 278882 LC_gene_5552 1 - 278650 278882 -chrXI 280434 282395 HC_gene_5553 307 - 280434 282395 -chrXI 285934 286381 HC_gene_5554 4 - 286158 286381 -chrXI 291042 291210 MC_gene_5555 1 - 291042 291210 -chrXI 291289 291816 MC_gene_5556 1 - 291289 291816 -chrXI 292579 294401 HC_gene_5557 36 - 292579 294401 -chrXI 294424 296218 HC_gene_5558 32 - 294512 296218 -chrXI 298741 299140 LC_gene_5559 1 - 298784 299140 -chrXI 302341 302775 MC_gene_5560 1 - 302341 302775 -chrXI 303554 307031 HC_gene_5561 51 - 303554 307031 -chrXI 308280 308662 MC_gene_5562 1 - 308285 308662 -chrXI 308939 309925 HC_gene_5563 10 - 308944 309925 -chrXI 313595 314464 MC_gene_5564 1 - 313595 314464 -chrXI 314334 314683 MC_gene_5565 1 - 314334 314683 -chrXI 315286 316094 HC_gene_5566 12 - 315388 316094 -chrXI 316123 317356 HC_gene_5567 398 - 316123 317356 -chrXI 319307 321515 HC_gene_5568 186 - 319307 321515 -chrXI 321570 322157 MC_gene_5569 1 - 321570 322157 -chrXI 325816 327510 HC_gene_5570 14773 - 325961 327510 -chrXI 327919 329514 HC_gene_5571 30 - 328017 329514 -chrXI 330785 334000 HC_gene_5572 11 - 330796 334000 -chrXI 334058 334955 HC_gene_5573 4673 - 334309 334955 -chrXI 336231 338851 HC_gene_5574 561 - 336320 338851 -chrXI 338955 339516 HC_gene_5575 301 - 339065 339516 -chrXI 339549 341067 HC_gene_5576 108 - 339593 341067 -chrXI 341122 342102 HC_gene_5577 1 - 341159 342102 -chrXI 342651 346809 HC_gene_5578 33 - 342651 346809 -chrXI 346953 349222 HC_gene_5579 4 - 346994 349222 -chrXI 349245 350083 LC_gene_5580 1 - 349245 350083 -chrXI 350925 353179 HC_gene_5581 116 - 350975 353179 -chrXI 353003 355315 LC_gene_5582 1 - 353003 355315 -chrXI 357672 358134 MC_gene_5583 1 - 357929 358134 -chrXI 360012 362366 HC_gene_5584 139 - 360012 362366 -chrXI 364217 365248 HC_gene_5585 10 - 364281 365248 -chrXI 368285 369171 LC_gene_5586 1 - 368285 369171 -chrXI 369191 369676 HC_gene_5587 32 - 369196 369676 -chrXI 370826 371511 MC_gene_5588 1 - 370826 371511 -chrXI 371549 373093 LC_gene_5589 1 - 371549 373093 -chrXI 373543 374164 LC_gene_5590 1 - 373543 374164 -chrXI 374774 375237 HC_gene_5591 2 - 374774 375237 -chrXI 378913 379507 LC_gene_5592 1 - 378913 379507 -chrXI 379868 382040 HC_gene_5593 102 - 379905 382040 -chrXI 382317 384763 HC_gene_5594 101 - 382586 384763 -chrXI 384715 385047 HC_gene_5595 2 - 384715 385047 -chrXI 386629 387215 MC_gene_5596 1 - 386662 387215 -chrXI 387434 388203 MC_gene_5597 1 - 387434 388203 -chrXI 389120 389995 HC_gene_5598 39 - 389120 389995 -chrXI 390178 392314 HC_gene_5599 14 - 390178 392314 -chrXI 392358 393366 HC_gene_5600 237 - 392421 393366 -chrXI 394502 397148 HC_gene_5601 11 - 394532 397148 -chrXI 397185 398619 HC_gene_5602 151 - 397216 398619 -chrXI 398680 402157 HC_gene_5603 24 - 398763 402157 -chrXI 403241 404319 HC_gene_5604 221 - 403485 404319 -chrXI 405079 407250 HC_gene_5605 5 - 405079 407250 -chrXI 407270 408061 HC_gene_5606 477 - 407366 408061 -chrXI 411389 411897 HC_gene_5607 8 - 411419 411897 -chrXI 411495 416931 HC_gene_5608 22 - 411495 416931 -chrXI 417302 418069 HC_gene_5609 403 - 417320 418069 -chrXI 420036 421220 HC_gene_5610 30 - 420061 421220 -chrXI 421311 425991 HC_gene_5611 33 - 421339 425991 -chrXI 426982 428593 HC_gene_5612 236 - 426982 428593 -chrXI 429859 431304 HC_gene_5613 114 - 430071 431304 -chrXI 432872 434994 HC_gene_5614 43 - 432917 434994 -chrXI 436702 437475 HC_gene_5615 144 - 436864 437475 -chrXI 438455 439429 HC_gene_5616 98 - 438540 439429 -chrXI 440360 442790 HC_gene_5617 223 - 440375 442790 -chrXI 446111 446488 HC_gene_5618 2 - 446195 446488 -chrXI 446635 448045 HC_gene_5619 18 - 446692 448045 -chrXI 448290 451973 HC_gene_5620 108 - 448290 451973 -chrXI 454164 455547 HC_gene_5621 42 - 454199 455547 -chrXI 458694 461354 HC_gene_5622 5 - 458740 461354 -chrXI 461387 462805 HC_gene_5623 52 - 461397 462805 -chrXI 462927 463503 HC_gene_5624 7 - 462986 463503 -chrXI 463656 464681 MC_gene_5625 1 - 463660 464681 -chrXI 463811 464802 MC_gene_5626 1 - 463811 464802 -chrXI 464880 466215 HC_gene_5627 283 - 465134 466215 -chrXI 466780 468199 LC_gene_5628 1 - 466780 468199 -chrXI 468361 469326 LC_gene_5629 1 - 468361 469326 -chrXI 471500 473429 HC_gene_5630 14 - 471540 473429 -chrXI 473451 475929 HC_gene_5631 72 - 473451 475929 -chrXI 476048 478146 HC_gene_5632 6 - 476048 478146 -chrXI 482029 483188 HC_gene_5633 56 - 482047 483188 -chrXI 484859 487400 HC_gene_5634 33 - 485049 487400 -chrXI 488356 489762 HC_gene_5635 136 - 488563 489762 -chrXI 490546 490965 MC_gene_5636 1 - 490546 490965 -chrXI 493087 493652 MC_gene_5637 1 - 493087 493652 -chrXI 496199 497506 LC_gene_5638 1 - 496199 497506 -chrXI 497481 499846 HC_gene_5639 15 - 497481 499846 -chrXI 501017 502913 HC_gene_5640 20 - 501107 502913 -chrXI 503763 506490 MC_gene_5641 1 - 504151 506490 -chrXI 508476 510658 HC_gene_5642 22 - 508476 510658 -chrXI 510726 511807 HC_gene_5643 22 - 510787 511807 -chrXI 511857 513169 HC_gene_5644 80 - 511917 513169 -chrXI 513468 514428 HC_gene_5645 54 - 513554 514428 -chrXI 514534 516013 LC_gene_5646 1 - 514534 516013 -chrXI 516405 517001 MC_gene_5647 1 - 516405 517001 -chrXI 516877 517296 MC_gene_5648 1 - 516877 517296 -chrXI 517492 518413 MC_gene_5649 1 - 517492 518413 -chrXI 520680 521745 HC_gene_5650 417 - 520740 521745 -chrXI 521869 524002 HC_gene_5651 23 - 521869 524002 -chrXI 524068 525084 HC_gene_5652 30 - 524125 525084 -chrXI 525106 526660 HC_gene_5653 122 - 525216 526660 -chrXI 526758 527259 HC_gene_5654 47 - 526766 527259 -chrXI 532087 533544 HC_gene_5655 47 - 532090 533544 -chrXI 533545 533881 MC_gene_5656 1 - 533545 533881 -chrXI 533988 535356 HC_gene_5657 13 - 533996 535356 -chrXI 535401 538850 HC_gene_5658 1 - 535418 538850 -chrXI 540850 543996 MC_gene_5659 1 - 540884 543996 -chrXI 546928 547980 MC_gene_5660 1 - 547088 547980 -chrXI 551733 552368 LC_gene_5661 1 - 551733 552368 -chrXI 554053 554628 HC_gene_5662 3 - 554278 554628 -chrXI 556203 556352 MC_gene_5663 1 - 556203 556352 -chrXI 556382 557279 MC_gene_5664 2 - 556382 557279 -chrXI 558465 559366 HC_gene_5665 36 - 558951 559366 -chrXI 560579 562318 HC_gene_5666 29 - 560685 562318 -chrXI 563993 564988 LC_gene_5667 1 - 563993 564988 -chrXI 565093 565908 HC_gene_5668 232 - 565147 565908 -chrXI 565951 567229 HC_gene_5669 208 - 566018 567229 -chrXI 569998 570958 HC_gene_5670 181 - 570213 570958 -chrXI 573344 573737 MC_gene_5671 1 - 573344 573737 -chrXI 574391 576039 HC_gene_5672 117 - 574661 576039 -chrXI 576195 578262 HC_gene_5673 102 - 576209 578262 -chrXI 579283 579528 LC_gene_5674 1 - 579283 579528 -chrXI 579591 580794 HC_gene_5675 239 - 579664 580794 -chrXI 580856 581732 MC_gene_5676 1 - 580856 581732 -chrXI 583902 584284 LC_gene_5677 1 - 583902 584284 -chrXI 585834 586620 MC_gene_5678 1 - 585834 586620 -chrXI 586620 589551 HC_gene_5679 5 - 586626 589551 -chrXI 591140 592562 HC_gene_5680 313 - 591412 592562 -chrXI 596032 596863 HC_gene_5681 99 - 596271 596863 -chrXI 596934 598926 HC_gene_5682 31 - 596968 598926 -chrXI 598993 599691 HC_gene_5683 119 - 599000 599691 -chrXI 603022 604255 HC_gene_5684 52 - 603093 604255 -chrXI 604310 605432 HC_gene_5685 70 - 604335 605432 -chrXI 605471 608445 HC_gene_5686 39 - 605511 608445 -chrXI 608777 611227 MC_gene_5687 3 - 608777 611227 -chrXI 612082 613914 HC_gene_5688 287 - 612416 613914 -chrXI 614109 614714 LC_gene_5689 1 - 614111 614714 -chrXI 615488 616001 LC_gene_5690 1 - 615488 616001 -chrXI 617322 618762 HC_gene_5691 3820 - 617652 618762 -chrXI 625960 626494 HC_gene_5692 8 - 626185 626494 -chrXI 629727 630038 LC_gene_5693 1 - 629727 630038 -chrXI 630419 631986 MC_gene_5694 1 - 630419 631986 -chrXI 632944 635317 HC_gene_5695 13 - 632944 635317 -chrXI 638418 640320 HC_gene_5696 59 - 638449 640320 -chrXI 642819 645152 LC_gene_5697 1 - 642819 645152 -chrXI 649935 650331 HC_gene_5698 59 - 649975 650331 -chrXI 652480 654514 LC_gene_5699 1 - 652480 654514 -chrXI 657899 658363 MC_gene_5700 1 - 657899 658363 -chrXI 658105 658556 MC_gene_5701 1 - 658105 658556 -chrXI 661255 662454 MC_gene_5702 3 - 661255 662454 -chrXII 13919 14349 LC_gene_5703 1 + 13919 14349 -chrXII 16217 16448 MC_gene_5704 1 + 16217 16448 -chrXII 17947 19908 HC_gene_5705 10 + 17947 19906 -chrXII 22927 23320 LC_gene_5706 1 + 22927 23320 -chrXII 23523 25401 HC_gene_5707 11 + 23523 25381 -chrXII 26240 27215 HC_gene_5708 11 + 26240 27215 -chrXII 29093 31940 HC_gene_5709 12 + 29093 31940 -chrXII 39084 39761 LC_gene_5710 1 + 39084 39761 -chrXII 40663 41481 HC_gene_5711 74 + 40663 41292 -chrXII 46814 47459 LC_gene_5712 1 + 46814 47459 -chrXII 49908 52435 HC_gene_5713 77 + 49908 52435 -chrXII 52522 52768 MC_gene_5714 1 + 52522 52768 -chrXII 63946 64336 MC_gene_5715 1 + 63946 64336 -chrXII 65831 66778 MC_gene_5716 1 + 65831 66778 -chrXII 66736 67470 MC_gene_5717 1 + 66736 67470 -chrXII 68417 70621 HC_gene_5718 11 + 68417 70618 -chrXII 73397 74994 HC_gene_5719 13 + 73397 74994 -chrXII 81357 83868 HC_gene_5720 36 + 81357 83826 -chrXII 84668 87031 HC_gene_5721 151 + 84668 86958 -chrXII 87196 88540 HC_gene_5722 150 + 87196 88262 -chrXII 88565 91514 HC_gene_5723 416 + 88565 91436 -chrXII 91588 92211 MC_gene_5724 1 + 91588 92211 -chrXII 92782 95335 HC_gene_5725 21 + 92782 95335 -chrXII 97835 99168 MC_gene_5726 2 + 97835 98990 -chrXII 99607 100601 MC_gene_5727 1 + 99607 100472 -chrXII 100793 105364 MC_gene_5728 1 + 100793 105364 -chrXII 102643 105537 MC_gene_5729 5 + 102643 105520 -chrXII 105682 108246 LC_gene_5730 1 + 105682 108246 -chrXII 109254 109675 LC_gene_5731 1 + 109254 109668 -chrXII 111840 116199 HC_gene_5732 14 + 111840 116199 -chrXII 116311 121273 HC_gene_5733 27 + 116311 121272 -chrXII 121302 121865 HC_gene_5734 265 + 121302 121793 -chrXII 121865 124958 LC_gene_5735 1 + 121865 124958 -chrXII 125479 127403 HC_gene_5736 31 + 125479 127336 -chrXII 127510 129260 HC_gene_5737 44 + 127510 129260 -chrXII 129326 131192 MC_gene_5738 1 + 129326 131192 -chrXII 130885 131295 MC_gene_5739 1 + 130885 131295 -chrXII 131697 134248 HC_gene_5740 118 + 131697 134103 -chrXII 136546 139780 HC_gene_5741 8 + 136546 139743 -chrXII 139963 140549 LC_gene_5742 1 + 139963 140549 -chrXII 141065 143060 HC_gene_5743 15 + 141065 143021 -chrXII 143195 146215 HC_gene_5744 5 + 143195 146144 -chrXII 146274 147673 HC_gene_5745 11 + 146274 147670 -chrXII 147835 150394 HC_gene_5746 14 + 147835 150345 -chrXII 151100 153450 HC_gene_5747 1 + 151100 153450 -chrXII 156517 156935 MC_gene_5748 1 + 156517 156935 -chrXII 158055 158959 HC_gene_5749 2 + 158055 158959 -chrXII 159865 161639 HC_gene_5750 33 + 159865 161563 -chrXII 164383 165584 HC_gene_5751 50 + 164383 165574 -chrXII 166385 167413 HC_gene_5752 265 + 166385 167264 -chrXII 167433 167929 MC_gene_5753 1 + 167433 167891 -chrXII 169052 169975 HC_gene_5754 42 + 169052 169975 -chrXII 171721 172104 LC_gene_5755 1 + 171721 172104 -chrXII 175172 177247 HC_gene_5756 14 + 175172 177208 -chrXII 177598 178936 HC_gene_5757 101 + 177598 178709 -chrXII 180027 181838 HC_gene_5758 77 + 180027 181735 -chrXII 183589 184377 HC_gene_5759 54 + 183589 184345 -chrXII 185076 185541 LC_gene_5760 1 + 185076 185530 -chrXII 187652 188505 HC_gene_5761 2 + 187652 188505 -chrXII 193482 193958 MC_gene_5762 1 + 193482 193958 -chrXII 193697 194203 MC_gene_5763 1 + 193697 194203 -chrXII 194401 195422 HC_gene_5764 238 + 194401 195358 -chrXII 196796 198335 MC_gene_5765 1 + 196796 198335 -chrXII 198783 199914 HC_gene_5766 134 + 198783 199533 -chrXII 201728 202183 HC_gene_5767 12 + 201728 201934 -chrXII 202982 203223 MC_gene_5768 1 + 202982 203198 -chrXII 203262 204810 HC_gene_5769 3 + 203262 204810 -chrXII 204940 208586 HC_gene_5770 17 + 204940 208581 -chrXII 208706 210618 HC_gene_5771 79 + 208706 210438 -chrXII 210845 211189 LC_gene_5772 1 + 210845 211189 -chrXII 211612 212210 MC_gene_5773 1 + 211612 212210 -chrXII 212413 213399 LC_gene_5774 1 + 212413 213399 -chrXII 221227 221651 HC_gene_5775 2 + 221227 221651 -chrXII 222336 222619 HC_gene_5776 9 + 222336 222619 -chrXII 224156 224703 HC_gene_5777 6 + 224156 224703 -chrXII 224886 225293 HC_gene_5778 8 + 224886 225293 -chrXII 228655 228880 MC_gene_5779 1 + 228655 228880 -chrXII 228899 230602 HC_gene_5780 1 + 228899 230602 -chrXII 230745 231275 HC_gene_5781 71 + 230745 231247 -chrXII 231393 231716 HC_gene_5782 3 + 231393 231699 -chrXII 231716 232072 MC_gene_5783 1 + 231716 232072 -chrXII 232417 234804 LC_gene_5784 1 + 232417 234779 -chrXII 234851 235746 HC_gene_5785 1 + 234851 235672 -chrXII 239347 239892 LC_gene_5786 1 + 239347 239892 -chrXII 242188 243830 HC_gene_5787 2043 + 242188 243746 -chrXII 244527 245620 LC_gene_5788 1 + 244527 245620 -chrXII 245577 246208 HC_gene_5789 48 + 245577 246208 -chrXII 247193 248669 HC_gene_5790 60 + 247193 248653 -chrXII 249343 250936 MC_gene_5791 1 + 249343 250936 -chrXII 253637 255201 HC_gene_5792 584 + 253637 255086 -chrXII 255239 258025 HC_gene_5793 11 + 255239 257967 -chrXII 259911 260890 MC_gene_5794 1 + 259911 260885 -chrXII 260940 263116 HC_gene_5795 250 + 260940 262979 -chrXII 263168 264254 HC_gene_5796 2355 + 263168 264070 -chrXII 264274 266417 HC_gene_5797 114 + 264274 266397 -chrXII 267117 268061 HC_gene_5798 178 + 267117 267975 -chrXII 270977 271713 HC_gene_5799 117 + 270977 271574 -chrXII 274102 275371 HC_gene_5800 1 + 274102 275371 -chrXII 278840 281166 HC_gene_5801 23 + 278840 281030 -chrXII 281186 281583 HC_gene_5802 1 + 281186 281551 -chrXII 282904 283757 HC_gene_5803 5808 + 282904 283713 -chrXII 283843 285801 HC_gene_5804 13 + 283843 285798 -chrXII 286766 287886 HC_gene_5805 118 + 286766 287828 -chrXII 287983 289377 HC_gene_5806 26 + 287983 289377 -chrXII 289425 290092 LC_gene_5807 1 + 289425 290092 -chrXII 291744 292186 MC_gene_5808 1 + 291744 292186 -chrXII 293668 293933 MC_gene_5809 1 + 293668 293933 -chrXII 296592 297276 LC_gene_5810 1 + 296592 297276 -chrXII 300973 302012 LC_gene_5811 1 + 300973 302012 -chrXII 302188 306864 HC_gene_5812 6 + 302188 306829 -chrXII 307668 308947 MC_gene_5813 1 + 307668 308947 -chrXII 316073 318123 HC_gene_5814 22 + 316073 318123 -chrXII 317956 320602 MC_gene_5815 1 + 317956 320536 -chrXII 320647 322247 HC_gene_5816 43 + 320647 322247 -chrXII 322274 323489 HC_gene_5817 12 + 322274 323476 -chrXII 323525 326313 HC_gene_5818 6 + 323525 326310 -chrXII 329685 332236 MC_gene_5819 1 + 329685 332236 -chrXII 332392 336170 HC_gene_5820 11 + 332392 336148 -chrXII 338300 339710 MC_gene_5821 1 + 338300 339710 -chrXII 339650 340981 MC_gene_5822 1 + 339650 340981 -chrXII 341233 341693 HC_gene_5823 240 + 341233 341650 -chrXII 342319 343189 HC_gene_5824 83 + 342319 343062 -chrXII 346212 347147 HC_gene_5825 88 + 346212 347042 -chrXII 364114 365799 HC_gene_5826 82 + 364114 365799 -chrXII 367250 368228 MC_gene_5827 1 + 367250 368228 -chrXII 368742 369574 HC_gene_5828 4357 + 368742 369384 -chrXII 370747 373313 HC_gene_5829 157 + 370747 373090 -chrXII 373389 374288 HC_gene_5830 5 + 373389 374242 -chrXII 377966 380713 HC_gene_5831 16 + 377966 380713 -chrXII 380853 382583 HC_gene_5832 41 + 380853 382583 -chrXII 385569 386360 HC_gene_5833 64 + 385569 386340 -chrXII 387844 390453 HC_gene_5834 34 + 387844 390453 -chrXII 390605 391320 MC_gene_5835 1 + 390605 391320 -chrXII 390897 391459 MC_gene_5836 1 + 390897 391442 -chrXII 391845 394471 HC_gene_5837 1 + 391845 394471 -chrXII 395814 396693 HC_gene_5838 7 + 395814 396693 -chrXII 398503 399627 HC_gene_5839 7 + 398503 399627 -chrXII 399631 402726 HC_gene_5840 62 + 399631 402602 -chrXII 403651 404490 LC_gene_5841 1 + 403651 404490 -chrXII 408413 412541 HC_gene_5842 17 + 408413 412541 -chrXII 413254 415693 HC_gene_5843 4 + 413254 415683 -chrXII 415757 416461 MC_gene_5844 1 + 415757 416461 -chrXII 416997 418170 HC_gene_5845 27 + 416997 418152 -chrXII 418272 421496 HC_gene_5846 101 + 418272 421457 -chrXII 423667 425306 HC_gene_5847 56 + 423667 425186 -chrXII 425306 426762 MC_gene_5848 1 + 425306 426762 -chrXII 427285 429652 HC_gene_5849 18 + 427285 429651 -chrXII 431436 433036 HC_gene_5850 68 + 431436 432822 -chrXII 433708 434326 HC_gene_5851 115 + 433708 434154 -chrXII 434609 436466 HC_gene_5852 1 + 434609 436409 -chrXII 437300 437614 HC_gene_5853 14 + 437300 437536 -chrXII 437614 438550 MC_gene_5854 1 + 437614 438550 -chrXII 440229 441658 HC_gene_5855 2778 + 440229 441606 -chrXII 441658 442430 MC_gene_5856 2 + 441658 442419 -chrXII 444051 444999 LC_gene_5857 1 + 444051 444999 -chrXII 449736 450727 HC_gene_5858 4 + 449736 450727 -chrXII 459950 460450 HC_gene_5859 11 + 459950 460427 -chrXII 460519 460842 MC_gene_5860 1 + 460519 460842 -chrXII 467944 469505 LC_gene_5861 1 + 467944 469505 -chrXII 489009 490613 MC_gene_5862 1 + 489009 490613 -chrXII 489795 490770 MC_gene_5863 1 + 489795 490681 -chrXII 490883 492690 HC_gene_5864 27 + 490883 492690 -chrXII 493527 494677 HC_gene_5865 25 + 493527 494491 -chrXII 495098 495458 MC_gene_5866 1 + 495098 495458 -chrXII 498889 499935 HC_gene_5867 10033 + 498889 499467 -chrXII 500604 501124 MC_gene_5868 1 + 500604 501124 -chrXII 500706 501157 MC_gene_5869 1 + 500706 501157 -chrXII 501301 504349 HC_gene_5870 1 + 501301 504349 -chrXII 502338 505929 HC_gene_5871 19 + 502338 505929 -chrXII 506114 507940 HC_gene_5872 813 + 506114 507726 -chrXII 510350 513053 HC_gene_5873 50 + 510350 513015 -chrXII 513237 514080 LC_gene_5874 1 + 513237 514080 -chrXII 514089 514974 HC_gene_5875 8 + 514089 514974 -chrXII 515204 516883 HC_gene_5876 943 + 515204 516682 -chrXII 517908 520596 HC_gene_5877 32 + 517908 520473 -chrXII 522640 523535 HC_gene_5878 5139 + 522640 523406 -chrXII 523574 524582 HC_gene_5879 207 + 523574 524473 -chrXII 524641 528051 HC_gene_5880 5 + 524641 528051 -chrXII 528229 530614 HC_gene_5881 20 + 528229 530610 -chrXII 534029 534711 MC_gene_5882 1 + 534029 534711 -chrXII 534834 537201 HC_gene_5883 38 + 534834 537100 -chrXII 537239 538723 HC_gene_5884 23 + 537239 538682 -chrXII 540778 541837 HC_gene_5885 21 + 540778 541783 -chrXII 542020 543376 LC_gene_5886 1 + 542020 543289 -chrXII 543478 543811 MC_gene_5887 1 + 543478 543811 -chrXII 543892 545979 HC_gene_5888 172 + 543892 545933 -chrXII 546059 547942 HC_gene_5889 872 + 546059 547799 -chrXII 547942 548732 LC_gene_5890 1 + 547942 548732 -chrXII 548992 549750 HC_gene_5891 257 + 548992 549486 -chrXII 550124 550611 HC_gene_5892 2 + 550124 550611 -chrXII 552238 553011 HC_gene_5893 193 + 552238 552756 -chrXII 554049 556574 HC_gene_5894 176 + 554049 556511 -chrXII 556777 559347 HC_gene_5895 9 + 556777 559343 -chrXII 559457 560879 HC_gene_5896 315 + 559457 560747 -chrXII 560879 561764 LC_gene_5897 1 + 560879 561764 -chrXII 561948 563604 HC_gene_5898 17 + 561948 563564 -chrXII 564089 566336 LC_gene_5899 1 + 564089 566336 -chrXII 568517 570826 HC_gene_5900 26 + 568517 570774 -chrXII 570846 572029 HC_gene_5901 1 + 570846 572029 -chrXII 572554 573579 MC_gene_5902 1 + 572554 573468 -chrXII 573976 576748 HC_gene_5903 17 + 573976 576748 -chrXII 576686 578135 HC_gene_5904 132 + 576686 577963 -chrXII 585574 586003 LC_gene_5905 1 + 585574 586003 -chrXII 586172 587848 HC_gene_5906 68 + 586172 587660 -chrXII 589316 591235 HC_gene_5907 28 + 589316 591112 -chrXII 591343 591794 HC_gene_5908 15 + 591343 591747 -chrXII 591876 592560 LC_gene_5909 1 + 591876 592560 -chrXII 592942 593439 MC_gene_5910 1 + 592942 593439 -chrXII 595726 599038 MC_gene_5911 1 + 595726 599038 -chrXII 597040 599050 MC_gene_5912 1 + 597040 599050 -chrXII 602815 603089 MC_gene_5913 1 + 602815 603089 -chrXII 603880 604206 HC_gene_5914 23 + 603880 604206 -chrXII 604211 604657 LC_gene_5915 1 + 604211 604657 -chrXII 607712 609159 MC_gene_5916 1 + 607712 609159 -chrXII 610677 612273 MC_gene_5917 1 + 610677 612273 -chrXII 612230 614385 MC_gene_5918 2 + 612230 614369 -chrXII 614680 616353 HC_gene_5919 17 + 614680 616351 -chrXII 617498 620320 HC_gene_5920 11 + 617498 620320 -chrXII 620416 622958 HC_gene_5921 40 + 620416 622912 -chrXII 624123 625425 HC_gene_5922 66 + 624123 625364 -chrXII 626516 628320 HC_gene_5923 29 + 626516 628269 -chrXII 633561 636257 HC_gene_5924 76 + 633561 636229 -chrXII 636739 640089 HC_gene_5925 2354 + 636739 640089 -chrXII 639578 640206 HC_gene_5926 1113 + 639578 640206 -chrXII 640271 641284 HC_gene_5927 131 + 640271 641254 -chrXII 641365 642439 HC_gene_5928 25 + 641365 642439 -chrXII 642552 644549 HC_gene_5929 21 + 642552 644429 -chrXII 645322 645884 MC_gene_5930 1 + 645322 645883 -chrXII 646126 650078 HC_gene_5931 3 + 646126 648363 -chrXII 650098 651162 HC_gene_5932 5 + 650098 651162 -chrXII 653225 656905 HC_gene_5933 1 + 653225 656838 -chrXII 656905 657296 MC_gene_5934 1 + 656905 657296 -chrXII 657326 657925 HC_gene_5935 17 + 657326 657925 -chrXII 658471 658979 HC_gene_5936 3 + 658471 658736 -chrXII 659053 660116 HC_gene_5937 288 + 659053 659889 -chrXII 660647 663215 HC_gene_5938 118 + 660647 663212 -chrXII 665745 668124 HC_gene_5939 9 + 665745 668124 -chrXII 669201 669602 HC_gene_5940 5 + 669201 669477 -chrXII 669849 670349 HC_gene_5941 6 + 669849 670188 -chrXII 673106 675040 HC_gene_5942 846 + 673106 673982 -chrXII 675687 676487 MC_gene_5943 2 + 675687 676487 -chrXII 677938 678227 HC_gene_5944 3 + 677938 678227 -chrXII 678142 680063 HC_gene_5945 3 + 678142 680063 -chrXII 680159 681042 HC_gene_5946 97 + 680159 681038 -chrXII 681074 682456 HC_gene_5947 67 + 681074 682456 -chrXII 682393 683791 HC_gene_5948 44 + 682393 683791 -chrXII 683701 685502 LC_gene_5949 1 + 683701 685502 -chrXII 687305 687672 MC_gene_5950 1 + 687305 687672 -chrXII 688368 690146 LC_gene_5951 1 + 688368 690146 -chrXII 691533 694079 HC_gene_5952 17 + 691533 694015 -chrXII 694327 695234 HC_gene_5953 79 + 694327 695071 -chrXII 699857 702261 HC_gene_5954 2 + 699857 702261 -chrXII 704265 704695 LC_gene_5955 1 + 704265 704643 -chrXII 705167 706231 HC_gene_5956 27 + 705167 706182 -chrXII 707324 709083 HC_gene_5957 195 + 707324 709078 -chrXII 710898 711447 MC_gene_5958 1 + 710898 711240 -chrXII 713516 714732 MC_gene_5959 1 + 713516 714732 -chrXII 715057 717142 HC_gene_5960 4 + 715057 717141 -chrXII 721702 721802 MC_gene_5961 1 + 721702 721802 -chrXII 721763 722470 MC_gene_5962 1 + 721763 722363 -chrXII 723813 724052 HC_gene_5963 1 + 723813 724052 -chrXII 723884 724783 HC_gene_5964 31 + 723884 724731 -chrXII 724943 725385 LC_gene_5965 1 + 724943 725385 -chrXII 725633 725940 HC_gene_5966 15 + 725633 725940 -chrXII 725888 728233 HC_gene_5967 14 + 725888 728233 -chrXII 728855 730733 HC_gene_5968 1306 + 728855 730532 -chrXII 730792 731692 HC_gene_5969 232 + 730792 731688 -chrXII 732397 733985 MC_gene_5970 1 + 732397 733985 -chrXII 732509 734689 MC_gene_5971 3 + 732509 734689 -chrXII 735045 735686 MC_gene_5972 1 + 735045 735686 -chrXII 738059 738387 LC_gene_5973 1 + 738059 738387 -chrXII 744080 744975 HC_gene_5974 44 + 744080 744918 -chrXII 751070 752022 LC_gene_5975 1 + 751070 752022 -chrXII 757352 758824 HC_gene_5976 1 + 757352 758824 -chrXII 759466 760528 HC_gene_5977 97 + 759466 760401 -chrXII 761799 762565 LC_gene_5978 1 + 761799 762565 -chrXII 764771 766231 HC_gene_5979 3 + 764771 766231 -chrXII 766570 769254 HC_gene_5980 4 + 766570 769227 -chrXII 771922 776382 HC_gene_5981 11 + 771922 776367 -chrXII 778274 778926 LC_gene_5982 1 + 778274 778926 -chrXII 779142 780904 HC_gene_5983 43 + 779142 780895 -chrXII 781268 782000 LC_gene_5984 1 + 781268 782000 -chrXII 782097 783058 HC_gene_5985 62 + 782097 783025 -chrXII 784700 786493 HC_gene_5986 46 + 784700 786291 -chrXII 787651 789982 HC_gene_5987 226 + 787651 789825 -chrXII 790303 792158 HC_gene_5988 117 + 790303 791994 -chrXII 793174 793574 HC_gene_5989 2 + 793174 793503 -chrXII 793927 794439 LC_gene_5990 1 + 793927 794395 -chrXII 795360 796135 LC_gene_5991 1 + 795360 796135 -chrXII 796716 797116 MC_gene_5992 2 + 796716 797113 -chrXII 797405 799867 HC_gene_5993 34 + 797405 799716 -chrXII 804435 805214 LC_gene_5994 1 + 804435 805214 -chrXII 805825 806911 HC_gene_5995 7812 + 805825 806911 -chrXII 806909 809625 MC_gene_5996 1 + 806909 809625 -chrXII 809739 817827 HC_gene_5997 657 + 809739 817827 -chrXII 818046 818414 LC_gene_5998 1 + 818046 818414 -chrXII 819293 820509 HC_gene_5999 1990 + 819293 820509 -chrXII 820472 822267 HC_gene_6000 8 + 820472 822267 -chrXII 822601 823363 MC_gene_6001 1 + 822601 823363 -chrXII 823067 824260 MC_gene_6002 1 + 823067 824260 -chrXII 826723 827657 MC_gene_6003 1 + 826723 826984 -chrXII 828296 828644 HC_gene_6004 1 + 828296 828644 -chrXII 828681 829778 HC_gene_6005 287 + 828681 829521 -chrXII 830999 833637 HC_gene_6006 6 + 830999 833637 -chrXII 833878 836323 HC_gene_6007 8 + 833878 836316 -chrXII 839914 840220 LC_gene_6008 1 + 839914 840147 -chrXII 840288 841175 HC_gene_6009 84 + 840288 841123 -chrXII 841285 844193 HC_gene_6010 45 + 841285 844193 -chrXII 844206 845883 HC_gene_6011 631 + 844206 845865 -chrXII 846027 847562 HC_gene_6012 16 + 846027 847562 -chrXII 849071 849574 MC_gene_6013 1 + 849071 849401 -chrXII 849834 852235 HC_gene_6014 9 + 849834 852224 -chrXII 853431 855430 HC_gene_6015 159 + 853431 855428 -chrXII 855835 857520 HC_gene_6016 943 + 855835 857520 -chrXII 857462 859381 HC_gene_6017 15 + 857462 859381 -chrXII 859311 861673 HC_gene_6018 21 + 859311 861651 -chrXII 862517 863669 MC_gene_6019 1 + 862517 863596 -chrXII 864930 867029 HC_gene_6020 9 + 864930 866959 -chrXII 867180 868851 HC_gene_6021 582 + 867180 868716 -chrXII 871658 873038 HC_gene_6022 170 + 871658 872820 -chrXII 873734 874978 HC_gene_6023 3 + 873734 874978 -chrXII 878187 879654 HC_gene_6024 58 + 878187 879569 -chrXII 879692 882097 HC_gene_6025 5 + 879692 882001 -chrXII 884984 888698 HC_gene_6026 6 + 884984 888683 -chrXII 893604 896447 HC_gene_6027 10 + 893604 896447 -chrXII 898004 899143 HC_gene_6028 340 + 898004 898896 -chrXII 899179 899914 HC_gene_6029 86 + 899179 899874 -chrXII 902893 903554 HC_gene_6030 113 + 902893 903485 -chrXII 903668 905005 HC_gene_6031 1898 + 903668 904666 -chrXII 906635 906909 MC_gene_6032 1 + 906635 906905 -chrXII 907034 909503 HC_gene_6033 4 + 907034 909492 -chrXII 910259 911342 HC_gene_6034 3 + 910259 911342 -chrXII 912025 912489 MC_gene_6035 1 + 912025 912489 -chrXII 914981 916490 LC_gene_6036 1 + 914981 916490 -chrXII 918042 919062 LC_gene_6037 1 + 918042 919062 -chrXII 919284 920050 MC_gene_6038 1 + 919284 920050 -chrXII 924952 926082 HC_gene_6039 18 + 924952 925692 -chrXII 926102 928173 HC_gene_6040 17 + 926102 928081 -chrXII 928704 929731 HC_gene_6041 26 + 928704 929725 -chrXII 929789 931041 HC_gene_6042 51 + 929789 931041 -chrXII 931600 932354 LC_gene_6043 1 + 931600 932354 -chrXII 932722 934156 HC_gene_6044 53 + 932722 933879 -chrXII 934456 935043 LC_gene_6045 1 + 934456 935043 -chrXII 937490 941109 HC_gene_6046 24 + 937490 941085 -chrXII 945900 947107 MC_gene_6047 1 + 945900 947107 -chrXII 947253 948125 MC_gene_6048 1 + 947253 948125 -chrXII 947505 948146 MC_gene_6049 1 + 947505 948146 -chrXII 948349 950192 HC_gene_6050 74 + 948349 950181 -chrXII 951107 953580 HC_gene_6051 272 + 951107 953351 -chrXII 954921 956797 HC_gene_6052 25 + 954921 956797 -chrXII 958365 962790 HC_gene_6053 6 + 958365 962790 -chrXII 963760 965189 HC_gene_6054 185 + 963760 965028 -chrXII 965792 966809 HC_gene_6055 4 + 965792 966519 -chrXII 967637 968332 MC_gene_6056 1 + 967637 968332 -chrXII 968200 969560 MC_gene_6057 1 + 968200 969548 -chrXII 971454 971875 HC_gene_6058 8 + 971454 971853 -chrXII 973363 975658 HC_gene_6059 6 + 973363 975658 -chrXII 980423 981591 LC_gene_6060 1 + 980423 981591 -chrXII 982711 986889 HC_gene_6061 3 + 982711 986889 -chrXII 987035 988205 HC_gene_6062 27 + 987035 988193 -chrXII 988332 990654 HC_gene_6063 33 + 988332 990604 -chrXII 990733 992968 HC_gene_6064 158 + 990733 992849 -chrXII 993134 994410 HC_gene_6065 4 + 993134 993434 -chrXII 998911 1000289 HC_gene_6066 18 + 998911 1000215 -chrXII 1002448 1004365 HC_gene_6067 365 + 1002448 1004365 -chrXII 1003183 1004579 HC_gene_6068 36 + 1003183 1004570 -chrXII 1006323 1007378 HC_gene_6069 279 + 1006323 1007146 -chrXII 1010968 1011382 HC_gene_6070 3 + 1010968 1011382 -chrXII 1011570 1012235 MC_gene_6071 1 + 1011570 1012213 -chrXII 1012459 1013909 MC_gene_6072 4 + 1012459 1013895 -chrXII 1014456 1015611 HC_gene_6073 37 + 1014456 1015593 -chrXII 1017869 1018177 LC_gene_6074 1 + 1017869 1018177 -chrXII 1019316 1020273 LC_gene_6075 1 + 1019316 1020273 -chrXII 1022490 1024077 HC_gene_6076 26 + 1022490 1024074 -chrXII 1025176 1025603 HC_gene_6077 1 + 1025176 1025603 -chrXII 1026854 1027809 LC_gene_6078 1 + 1026854 1027809 -chrXII 1028795 1030206 HC_gene_6079 1455 + 1028795 1030080 -chrXII 1030226 1030622 HC_gene_6080 1 + 1030226 1030622 -chrXII 1030793 1032337 HC_gene_6081 361 + 1030793 1032337 -chrXII 1032442 1035900 HC_gene_6082 9 + 1032442 1035900 -chrXII 1035976 1039145 HC_gene_6083 8 + 1035976 1039145 -chrXII 1041751 1043070 HC_gene_6084 11 + 1041751 1043070 -chrXII 1043880 1045451 HC_gene_6085 1 + 1043880 1045083 -chrXII 1047637 1051968 HC_gene_6086 21 + 1047637 1051963 -chrXII 1053415 1055026 HC_gene_6087 55 + 1053415 1054958 -chrXII 1055056 1056065 HC_gene_6088 27 + 1055056 1056065 -chrXII 1057293 1059170 HC_gene_6089 44 + 1057293 1059170 -chrXII 1059361 1059727 LC_gene_6090 1 + 1059361 1059727 -chrXII 1061937 1063415 LC_gene_6091 1 + 1061937 1063415 -chrXII 1069293 1077905 LC_gene_6092 1 + 1069293 1077905 -chrXII 442 10717 LC_gene_6093 1 - 442 10717 -chrXII 14489 16031 HC_gene_6094 4 - 14489 16031 -chrXII 16513 17662 HC_gene_6095 14 - 16513 17662 -chrXII 17862 19844 LC_gene_6096 1 - 17862 19844 -chrXII 20168 20857 MC_gene_6097 1 - 20168 20857 -chrXII 20905 22685 HC_gene_6098 25 - 20905 22685 -chrXII 22731 23197 MC_gene_6099 1 - 22773 23197 -chrXII 25563 26063 HC_gene_6100 3 - 25563 26063 -chrXII 27286 29247 HC_gene_6101 6 - 27286 29247 -chrXII 32309 35233 HC_gene_6102 1 - 32309 35233 -chrXII 35402 36384 HC_gene_6103 3 - 35402 36384 -chrXII 37134 39494 HC_gene_6104 29 - 37149 39494 -chrXII 39568 40440 HC_gene_6105 89 - 39677 40440 -chrXII 40859 43022 HC_gene_6106 36 - 40859 43022 -chrXII 43042 43771 HC_gene_6107 1 - 43066 43771 -chrXII 43791 46434 HC_gene_6108 16 - 45503 46434 -chrXII 46478 47078 MC_gene_6109 1 - 46478 47078 -chrXII 47492 48706 HC_gene_6110 4197 - 47779 48706 -chrXII 49329 49594 MC_gene_6111 1 - 49329 49594 -chrXII 51983 52639 HC_gene_6112 35 - 51983 52639 -chrXII 52720 53976 HC_gene_6113 55 - 52738 53976 -chrXII 54144 54939 HC_gene_6114 12 - 54144 54939 -chrXII 61850 63750 HC_gene_6115 3 - 61877 63750 -chrXII 63788 66556 HC_gene_6116 243 - 63937 66556 -chrXII 66647 68268 HC_gene_6117 44 - 66658 68268 -chrXII 70431 73185 HC_gene_6118 44 - 70481 73185 -chrXII 73902 76828 HC_gene_6119 10 - 73902 76828 -chrXII 77009 80262 HC_gene_6120 16 - 77009 80262 -chrXII 81410 82061 LC_gene_6121 1 - 81410 82061 -chrXII 83164 83620 MC_gene_6122 1 - 83164 83620 -chrXII 83620 84078 MC_gene_6123 1 - 83645 84078 -chrXII 84673 86174 LC_gene_6124 1 - 84673 86174 -chrXII 88150 88380 HC_gene_6125 2 - 88150 88380 -chrXII 91616 92304 LC_gene_6126 1 - 91616 92304 -chrXII 94601 95110 MC_gene_6127 1 - 94601 95110 -chrXII 95244 97516 HC_gene_6128 172 - 95367 97516 -chrXII 97599 98867 HC_gene_6129 197 - 97930 98867 -chrXII 98912 100194 HC_gene_6130 50 - 98918 100194 -chrXII 105457 107416 HC_gene_6131 19 - 105537 107416 -chrXII 108054 109027 HC_gene_6132 65 - 108072 109027 -chrXII 109492 111605 HC_gene_6133 557 - 109755 111605 -chrXII 112190 114313 HC_gene_6134 4 - 112190 114313 -chrXII 115695 116102 LC_gene_6135 1 - 115695 116102 -chrXII 121525 124986 HC_gene_6136 37 - 121675 124986 -chrXII 125363 125818 MC_gene_6137 1 - 125363 125818 -chrXII 128868 130856 HC_gene_6138 22 - 129093 130856 -chrXII 130888 131452 HC_gene_6139 285 - 131083 131452 -chrXII 134008 136387 HC_gene_6140 13 - 134024 136387 -chrXII 137845 138249 MC_gene_6141 1 - 137845 138249 -chrXII 143034 143743 LC_gene_6142 1 - 143034 143743 -chrXII 146032 147084 LC_gene_6143 1 - 146032 147084 -chrXII 151309 153989 HC_gene_6144 10 - 151313 153989 -chrXII 154113 156365 HC_gene_6145 63 - 154297 156365 -chrXII 156576 157752 HC_gene_6146 106 - 156764 157752 -chrXII 157823 159658 MC_gene_6147 1 - 157858 159658 -chrXII 159487 159859 MC_gene_6148 1 - 159487 159859 -chrXII 161463 164069 MC_gene_6149 3 - 161492 164069 -chrXII 164520 165173 MC_gene_6150 1 - 164520 165173 -chrXII 165173 166195 HC_gene_6151 157 - 165301 166195 -chrXII 167087 167814 HC_gene_6152 30 - 167136 167814 -chrXII 169035 169475 MC_gene_6153 1 - 169035 169475 -chrXII 169758 170318 MC_gene_6154 1 - 169758 170318 -chrXII 170881 171657 LC_gene_6155 1 - 170881 171657 -chrXII 171880 175019 HC_gene_6156 4 - 171969 175019 -chrXII 176431 177459 HC_gene_6157 87 - 176473 177459 -chrXII 178459 179663 HC_gene_6158 66 - 178600 179663 -chrXII 181520 183455 HC_gene_6159 53 - 181538 183455 -chrXII 183953 184951 HC_gene_6160 117 - 184107 184951 -chrXII 184977 185147 HC_gene_6161 1 - 184994 185147 -chrXII 185001 187318 HC_gene_6162 25 - 185001 187318 -chrXII 187295 193459 MC_gene_6163 6 - 187295 193459 -chrXII 195320 196585 HC_gene_6164 38 - 195329 196585 -chrXII 196608 198114 HC_gene_6165 507 - 196789 198114 -chrXII 199211 201460 HC_gene_6166 274 - 199440 201460 -chrXII 201577 202705 HC_gene_6167 4789 - 201879 202705 -chrXII 203105 204718 HC_gene_6168 5 - 203135 204718 -chrXII 210216 212099 HC_gene_6169 89 - 210323 212099 -chrXII 212022 214479 HC_gene_6170 7 - 212022 214479 -chrXII 214872 215723 MC_gene_6171 1 - 214878 215723 -chrXII 215127 220762 MC_gene_6172 1 - 215127 220762 -chrXII 221051 222173 HC_gene_6173 56 - 221087 222173 -chrXII 222547 224577 HC_gene_6174 1 - 222547 224577 -chrXII 224601 225254 HC_gene_6175 333 - 224601 225254 -chrXII 224760 228502 HC_gene_6176 7 - 224760 228502 -chrXII 228655 229705 HC_gene_6177 482 - 228773 229705 -chrXII 229763 230484 HC_gene_6178 82 - 229856 230484 -chrXII 230539 231192 HC_gene_6179 2 - 230539 231192 -chrXII 231241 232060 HC_gene_6180 530 - 231404 232060 -chrXII 232097 234112 HC_gene_6181 13976 - 232311 234112 -chrXII 234703 237714 HC_gene_6182 11 - 234795 237714 -chrXII 237895 241681 HC_gene_6183 4 - 237963 241681 -chrXII 243769 245350 HC_gene_6184 41 - 243780 245350 -chrXII 245436 246255 HC_gene_6185 125 - 245480 246255 -chrXII 246232 247013 HC_gene_6186 242 - 246232 247013 -chrXII 247992 248448 MC_gene_6187 1 - 247992 248448 -chrXII 248481 249165 HC_gene_6188 3 - 248481 249165 -chrXII 251212 253139 HC_gene_6189 38 - 251212 253139 -chrXII 254668 255017 LC_gene_6190 1 - 254668 255017 -chrXII 257595 260518 HC_gene_6191 1323 - 257863 260518 -chrXII 262776 263228 LC_gene_6192 1 - 262776 263228 -chrXII 263942 264829 LC_gene_6193 1 - 263942 264829 -chrXII 264829 265268 HC_gene_6194 1 - 264898 265268 -chrXII 265635 266204 LC_gene_6195 1 - 265635 266204 -chrXII 266204 266950 HC_gene_6196 334 - 266266 266950 -chrXII 267718 268142 HC_gene_6197 6 - 267718 268142 -chrXII 269478 270801 HC_gene_6198 1 - 269506 270801 -chrXII 271453 273932 HC_gene_6199 41 - 271498 273932 -chrXII 274043 275235 MC_gene_6200 1 - 274043 275235 -chrXII 275232 278656 HC_gene_6201 16 - 275232 278656 -chrXII 280551 281706 HC_gene_6202 62 - 280937 281706 -chrXII 281718 282793 HC_gene_6203 296 - 281718 282793 -chrXII 285490 286613 HC_gene_6204 73 - 285643 286613 -chrXII 287706 288642 LC_gene_6205 1 - 287706 288642 -chrXII 289339 289635 MC_gene_6206 1 - 289339 289635 -chrXII 289964 291712 HC_gene_6207 3 - 289964 291712 -chrXII 292041 293629 HC_gene_6208 17 - 292041 293629 -chrXII 293709 296183 HC_gene_6209 147 - 293922 296183 -chrXII 296381 300402 HC_gene_6210 10 - 296493 300402 -chrXII 300529 302009 HC_gene_6211 26 - 300564 302009 -chrXII 302089 302893 LC_gene_6212 1 - 302089 302893 -chrXII 306759 307392 HC_gene_6213 6 - 306770 307392 -chrXII 308842 310029 MC_gene_6214 1 - 308842 310029 -chrXII 310195 312717 MC_gene_6215 1 - 310273 312717 -chrXII 314066 315894 HC_gene_6216 3 - 314266 315894 -chrXII 318008 320320 HC_gene_6217 176 - 318038 320320 -chrXII 322062 324761 MC_gene_6218 1 - 322077 324761 -chrXII 322772 325200 MC_gene_6219 1 - 322772 325200 -chrXII 326267 327471 HC_gene_6220 143 - 326330 327471 -chrXII 327599 329277 HC_gene_6221 56 - 327608 329277 -chrXII 329339 332153 HC_gene_6222 19 - 329612 332153 -chrXII 335965 336896 HC_gene_6223 11 - 335990 336896 -chrXII 336118 337343 HC_gene_6224 44 - 336118 337343 -chrXII 337367 339666 HC_gene_6225 10 - 337397 339666 -chrXII 339620 340951 HC_gene_6226 98 - 339620 340951 -chrXII 342820 343781 HC_gene_6227 31 - 342827 343781 -chrXII 343922 345996 HC_gene_6228 5 - 343922 345996 -chrXII 346800 348220 HC_gene_6229 55 - 346964 348220 -chrXII 348756 351558 HC_gene_6230 167 - 348824 351558 -chrXII 351634 355191 MC_gene_6231 2 - 352592 355191 -chrXII 354588 357042 MC_gene_6232 1 - 354588 357042 -chrXII 358199 363867 HC_gene_6233 6 - 359357 363867 -chrXII 365687 366120 HC_gene_6234 11 - 365687 366120 -chrXII 366480 369339 HC_gene_6235 5 - 366494 369339 -chrXII 369359 370141 HC_gene_6236 23147 - 369559 370141 -chrXII 371848 372970 MC_gene_6237 1 - 371848 372970 -chrXII 373785 374212 LC_gene_6238 1 - 373785 374212 -chrXII 374425 377304 HC_gene_6239 52 - 374548 377304 -chrXII 382284 384535 MC_gene_6240 5 - 382284 384535 -chrXII 384593 385444 HC_gene_6241 123 - 384618 385444 -chrXII 386023 390297 HC_gene_6242 258 - 386121 390297 -chrXII 390216 391714 HC_gene_6243 6 - 390216 391714 -chrXII 394532 395600 HC_gene_6244 60 - 394532 395600 -chrXII 395541 396649 MC_gene_6245 1 - 395541 396649 -chrXII 396601 398390 HC_gene_6246 4 - 396601 398390 -chrXII 398804 399410 MC_gene_6247 1 - 398914 399410 -chrXII 402451 404170 HC_gene_6248 33 - 402453 404170 -chrXII 404358 408217 HC_gene_6249 19 - 404436 408217 -chrXII 410420 411146 MC_gene_6250 1 - 410420 411146 -chrXII 412431 412761 HC_gene_6251 3 - 412431 412761 -chrXII 412913 413419 MC_gene_6252 1 - 412913 413419 -chrXII 414400 415532 HC_gene_6253 3 - 414412 415532 -chrXII 415533 416700 HC_gene_6254 2 - 415533 416700 -chrXII 416792 418083 MC_gene_6255 1 - 416806 418083 -chrXII 421317 423496 HC_gene_6256 4 - 421353 423496 -chrXII 423365 423853 HC_gene_6257 4 - 423365 423853 -chrXII 423464 423868 HC_gene_6258 11 - 423464 423868 -chrXII 425107 426065 MC_gene_6259 1 - 425107 426065 -chrXII 426679 427035 LC_gene_6260 1 - 426679 427035 -chrXII 429311 432030 HC_gene_6261 7 - 429340 432030 -chrXII 432556 433768 HC_gene_6262 73 - 432736 433768 -chrXII 433798 434485 HC_gene_6263 166 - 434048 434485 -chrXII 437432 439877 HC_gene_6264 2 - 437432 439877 -chrXII 441447 442739 HC_gene_6265 4 - 441447 442739 -chrXII 442869 445091 HC_gene_6266 41 - 442869 445091 -chrXII 445111 447644 HC_gene_6267 369 - 445115 447644 -chrXII 447560 448367 HC_gene_6268 173 - 447560 448367 -chrXII 449016 449389 MC_gene_6269 1 - 449016 449389 -chrXII 449092 449609 MC_gene_6270 1 - 449092 449609 -chrXII 451266 451503 LC_gene_6271 1 - 451266 451503 -chrXII 458670 459956 MC_gene_6272 1 - 458670 459956 -chrXII 460122 460680 MC_gene_6273 2 - 460126 460680 -chrXII 460922 461657 MC_gene_6274 1 - 460922 461657 -chrXII 463028 463956 MC_gene_6275 1 - 463028 463956 -chrXII 464934 466869 MC_gene_6276 1 - 464934 466869 -chrXII 468230 476857 LC_gene_6277 1 - 468230 476857 -chrXII 489753 490546 MC_gene_6278 1 - 489753 490546 -chrXII 491602 493280 HC_gene_6279 27 - 491717 493280 -chrXII 493311 494210 MC_gene_6280 1 - 493311 494210 -chrXII 494398 495251 HC_gene_6281 41 - 494414 495251 -chrXII 495174 498546 HC_gene_6282 25 - 495174 498546 -chrXII 499202 500326 HC_gene_6283 69 - 499448 500326 -chrXII 500359 501092 HC_gene_6284 164 - 500359 501092 -chrXII 501123 502170 HC_gene_6285 277 - 501185 502170 -chrXII 503522 504057 MC_gene_6286 1 - 503743 504057 -chrXII 505224 505816 MC_gene_6287 1 - 505363 505816 -chrXII 507698 510761 HC_gene_6288 4 - 507698 510761 -chrXII 510973 511852 LC_gene_6289 1 - 510973 511852 -chrXII 512490 512920 LC_gene_6290 1 - 512490 512920 -chrXII 513106 513847 HC_gene_6291 132 - 513106 513847 -chrXII 513916 514779 HC_gene_6292 1079 - 514013 514779 -chrXII 516472 517741 HC_gene_6293 107 - 516572 517741 -chrXII 520383 522060 HC_gene_6294 32 - 520385 522060 -chrXII 522285 522896 LC_gene_6295 1 - 522285 522896 -chrXII 530684 534469 HC_gene_6296 7 - 530697 534469 -chrXII 535112 536983 LC_gene_6297 1 - 535112 536983 -chrXII 538353 539639 HC_gene_6298 351 - 538389 539639 -chrXII 539761 540557 HC_gene_6299 87 - 539839 540557 -chrXII 540635 543326 HC_gene_6300 369 - 540742 543326 -chrXII 547703 548814 HC_gene_6301 54 - 547722 548814 -chrXII 549299 550341 HC_gene_6302 82 - 549407 550341 -chrXII 550396 552017 HC_gene_6303 80 - 550568 552017 -chrXII 552559 553835 MC_gene_6304 2 - 552559 553835 -chrXII 553708 554205 MC_gene_6305 1 - 553708 554205 -chrXII 560630 561757 HC_gene_6306 110 - 560665 561757 -chrXII 563306 564582 HC_gene_6307 22 - 563425 564582 -chrXII 564700 566297 HC_gene_6308 25 - 564703 566297 -chrXII 566440 567921 HC_gene_6309 1 - 566460 567921 -chrXII 568570 569970 MC_gene_6310 2 - 568570 569970 -chrXII 570566 571895 HC_gene_6311 22 - 570640 571895 -chrXII 571940 573231 HC_gene_6312 530 - 572038 573231 -chrXII 573179 573820 HC_gene_6313 118 - 573179 573820 -chrXII 576083 576377 LC_gene_6314 1 - 576083 576377 -chrXII 577972 579046 HC_gene_6315 220 - 578132 579046 -chrXII 579144 581791 HC_gene_6316 57 - 579216 581791 -chrXII 581858 585803 HC_gene_6317 29 - 582036 585803 -chrXII 587374 588960 HC_gene_6318 149 - 587570 588960 -chrXII 590432 593191 HC_gene_6319 45 - 590434 593191 -chrXII 599743 602667 HC_gene_6320 21 - 599818 602667 -chrXII 603275 603869 HC_gene_6321 13 - 603369 603869 -chrXII 603929 604996 HC_gene_6322 463 - 604120 604996 -chrXII 605182 605390 MC_gene_6323 1 - 605182 605390 -chrXII 605615 607147 HC_gene_6324 57 - 605615 607147 -chrXII 607918 609571 HC_gene_6325 4 - 607927 609571 -chrXII 609716 612786 MC_gene_6326 1 - 609716 612786 -chrXII 614203 614580 HC_gene_6327 27 - 614266 614580 -chrXII 616221 617334 HC_gene_6328 22 - 616221 617334 -chrXII 618603 619336 LC_gene_6329 1 - 618603 619336 -chrXII 620164 623930 HC_gene_6330 20 - 620164 623930 -chrXII 624833 626949 HC_gene_6331 386 - 625004 626949 -chrXII 628504 629105 HC_gene_6332 8 - 628601 629105 -chrXII 631637 632168 HC_gene_6333 1 - 631637 632168 -chrXII 632876 633943 LC_gene_6334 1 - 632883 633943 -chrXII 635883 636310 LC_gene_6335 1 - 636117 636310 -chrXII 641271 641626 MC_gene_6336 1 - 641271 641626 -chrXII 641626 642339 HC_gene_6337 1 - 641943 642339 -chrXII 644188 645749 HC_gene_6338 97 - 644188 645749 -chrXII 649285 650789 HC_gene_6339 37 - 649295 650789 -chrXII 656782 656965 MC_gene_6340 1 - 656782 656965 -chrXII 657051 658252 HC_gene_6341 52 - 657057 658252 -chrXII 658665 659526 LC_gene_6342 1 - 658665 659526 -chrXII 659686 660219 MC_gene_6343 1 - 659704 660219 -chrXII 659769 661407 MC_gene_6344 2 - 659769 661407 -chrXII 662865 665580 HC_gene_6345 776 - 663081 665580 -chrXII 666552 667524 MC_gene_6346 1 - 666552 667524 -chrXII 667730 668932 HC_gene_6347 180 - 667863 668932 -chrXII 669076 669701 HC_gene_6348 1289 - 669151 669701 -chrXII 669206 670050 HC_gene_6349 9 - 669206 670050 -chrXII 671810 672582 LC_gene_6350 1 - 671810 672582 -chrXII 674204 677500 HC_gene_6351 97 - 674234 677500 -chrXII 678795 679946 HC_gene_6352 1 - 678795 679946 -chrXII 682326 682591 MC_gene_6353 1 - 682347 682591 -chrXII 683596 687295 HC_gene_6354 1 - 683596 687295 -chrXII 687695 687884 MC_gene_6355 1 - 687701 687884 -chrXII 687788 688383 MC_gene_6356 1 - 687788 688383 -chrXII 688927 691203 HC_gene_6357 5 - 688927 691203 -chrXII 693943 694155 LC_gene_6358 1 - 693943 694155 -chrXII 694803 696927 HC_gene_6359 125 - 694968 696927 -chrXII 697040 699644 HC_gene_6360 6 - 697080 699644 -chrXII 699707 700769 HC_gene_6361 19 - 699844 700769 -chrXII 699952 704057 HC_gene_6362 2 - 699952 704057 -chrXII 704159 704975 HC_gene_6363 1 - 704159 704975 -chrXII 706097 707137 HC_gene_6364 21 - 706111 707137 -chrXII 707868 709771 HC_gene_6365 702 - 708145 709771 -chrXII 709791 712126 HC_gene_6366 59 - 710210 712126 -chrXII 712183 712737 HC_gene_6367 4502 - 712347 712737 -chrXII 712759 714923 HC_gene_6368 14 - 713002 714923 -chrXII 716962 717989 HC_gene_6369 132 - 716964 717989 -chrXII 718042 719495 HC_gene_6370 123 - 718130 719495 -chrXII 719576 720385 HC_gene_6371 236 - 719602 720385 -chrXII 720463 721454 HC_gene_6372 2496 - 720627 721454 -chrXII 721642 722418 HC_gene_6373 500 - 721746 722418 -chrXII 724441 725428 HC_gene_6374 72 - 724511 725428 -chrXII 725818 727063 MC_gene_6375 1 - 725818 727063 -chrXII 727459 727889 LC_gene_6376 1 - 727593 727889 -chrXII 727889 728561 LC_gene_6377 1 - 728066 728561 -chrXII 732004 733911 LC_gene_6378 1 - 732004 733911 -chrXII 733951 734493 LC_gene_6379 1 - 733951 734493 -chrXII 734909 736492 HC_gene_6380 442 - 735032 736492 -chrXII 736512 737588 HC_gene_6381 1 - 737357 737588 -chrXII 738085 743916 HC_gene_6382 2 - 738106 743916 -chrXII 744128 745001 LC_gene_6383 1 - 744128 745001 -chrXII 747192 748202 MC_gene_6384 1 - 747192 748202 -chrXII 748809 751791 HC_gene_6385 68 - 748832 751791 -chrXII 751937 757154 HC_gene_6386 34 - 751965 757154 -chrXII 757334 759028 HC_gene_6387 3 - 757334 759028 -chrXII 760299 762387 HC_gene_6388 7 - 760303 762387 -chrXII 762430 764208 HC_gene_6389 86 - 762434 764208 -chrXII 764742 765039 LC_gene_6390 1 - 764742 765039 -chrXII 765039 766383 HC_gene_6391 30 - 765141 766383 -chrXII 769026 771726 HC_gene_6392 13 - 769131 771726 -chrXII 776270 777876 HC_gene_6393 55 - 776273 777876 -chrXII 777911 778989 HC_gene_6394 18 - 777911 778989 -chrXII 780448 781400 HC_gene_6395 4623 - 780875 781400 -chrXII 782130 782720 LC_gene_6396 1 - 782130 782720 -chrXII 782952 783657 HC_gene_6397 255 - 782952 783657 -chrXII 786618 787400 HC_gene_6398 3 - 786723 787400 -chrXII 789445 789714 MC_gene_6399 1 - 789445 789714 -chrXII 789696 790383 MC_gene_6400 1 - 789696 790383 -chrXII 791898 793188 MC_gene_6401 1 - 791898 793188 -chrXII 793288 793545 LC_gene_6402 1 - 793288 793545 -chrXII 794027 795213 HC_gene_6403 72 - 794180 795213 -chrXII 795233 796368 HC_gene_6404 2401 - 795413 796368 -chrXII 797709 798933 LC_gene_6405 1 - 797709 798933 -chrXII 799473 802424 HC_gene_6406 22 - 799618 802424 -chrXII 802527 805172 HC_gene_6407 69 - 802527 805172 -chrXII 806821 808841 HC_gene_6408 14 - 806821 808841 -chrXII 815932 816819 MC_gene_6409 1 - 815948 816819 -chrXII 816904 817440 MC_gene_6410 1 - 817052 817440 -chrXII 817460 818363 HC_gene_6411 77 - 817729 818363 -chrXII 822131 822647 HC_gene_6412 124 - 822131 822647 -chrXII 823236 826540 HC_gene_6413 47 - 823288 826540 -chrXII 826700 827904 HC_gene_6414 130 - 826859 827904 -chrXII 827866 828333 HC_gene_6415 15 - 827866 828333 -chrXII 829214 830379 HC_gene_6416 211 - 829354 830379 -chrXII 831056 832263 LC_gene_6417 1 - 831056 832263 -chrXII 832474 833662 LC_gene_6418 1 - 832474 833662 -chrXII 835995 837399 HC_gene_6419 585 - 836189 837399 -chrXII 837453 839333 HC_gene_6420 1298 - 837453 839333 -chrXII 840274 841080 LC_gene_6421 1 - 840274 841080 -chrXII 845069 845595 LC_gene_6422 1 - 845069 845595 -chrXII 846735 849146 HC_gene_6423 11 - 846735 849146 -chrXII 849178 849703 HC_gene_6424 153 - 849221 849703 -chrXII 851726 853231 HC_gene_6425 59 - 852057 853231 -chrXII 853451 854330 HC_gene_6426 7 - 853705 854330 -chrXII 854376 854973 MC_gene_6427 1 - 854376 854973 -chrXII 854631 855457 MC_gene_6428 2 - 854631 855457 -chrXII 855351 855593 MC_gene_6429 1 - 855351 855593 -chrXII 861426 862295 HC_gene_6430 326 - 861526 862295 -chrXII 865303 866797 LC_gene_6431 1 - 865303 866797 -chrXII 866841 867526 MC_gene_6432 1 - 866841 867526 -chrXII 868522 871384 HC_gene_6433 20 - 868574 871384 -chrXII 872584 873589 HC_gene_6434 37 - 872649 873589 -chrXII 873606 875096 MC_gene_6435 2 - 873606 875096 -chrXII 875482 877384 HC_gene_6436 320 - 875533 877384 -chrXII 879525 879902 MC_gene_6437 1 - 879525 879902 -chrXII 879580 880177 MC_gene_6438 1 - 879580 880177 -chrXII 881860 885022 HC_gene_6439 12 - 881903 885022 -chrXII 888740 893421 HC_gene_6440 58 - 888775 893421 -chrXII 896049 898375 HC_gene_6441 140 - 896277 898375 -chrXII 899286 903386 HC_gene_6442 55 - 899355 903386 -chrXII 904560 906463 HC_gene_6443 1 - 904575 906463 -chrXII 906508 906902 MC_gene_6444 1 - 906618 906902 -chrXII 906762 907287 MC_gene_6445 1 - 906762 907287 -chrXII 909207 910007 HC_gene_6446 381 - 909432 910007 -chrXII 910070 912368 HC_gene_6447 5 - 910180 912368 -chrXII 912388 914913 HC_gene_6448 22 - 912404 914913 -chrXII 914993 919060 HC_gene_6449 17 - 915037 919060 -chrXII 919084 921643 HC_gene_6450 79 - 919196 921643 -chrXII 921522 922150 HC_gene_6451 2 - 921522 922150 -chrXII 921650 924491 HC_gene_6452 56 - 921650 924491 -chrXII 924760 925212 LC_gene_6453 1 - 924760 925212 -chrXII 928147 928586 HC_gene_6454 48 - 928147 928586 -chrXII 928815 929549 LC_gene_6455 1 - 928815 929549 -chrXII 930279 931900 HC_gene_6456 2001 - 930296 931900 -chrXII 932349 933657 LC_gene_6457 1 - 932349 933657 -chrXII 933785 934228 HC_gene_6458 67 - 933803 934228 -chrXII 934241 937282 HC_gene_6459 47 - 934241 937282 -chrXII 941054 942393 LC_gene_6460 1 - 941054 942393 -chrXII 946955 948141 MC_gene_6461 2 - 946955 948141 -chrXII 948488 949948 HC_gene_6462 22 - 948527 949948 -chrXII 950994 952743 LC_gene_6463 1 - 950994 952743 -chrXII 953209 954746 HC_gene_6464 140 - 953209 954746 -chrXII 956484 958156 HC_gene_6465 65 - 956587 958156 -chrXII 961356 963558 HC_gene_6466 8 - 961356 963558 -chrXII 964617 965565 HC_gene_6467 466 - 964851 965565 -chrXII 971692 973187 HC_gene_6468 11 - 971692 973187 -chrXII 974686 975738 LC_gene_6469 1 - 974686 975738 -chrXII 975856 976027 MC_gene_6470 1 - 975856 976027 -chrXII 976377 980334 LC_gene_6471 1 - 976377 980334 -chrXII 981916 982560 HC_gene_6472 3 - 981972 982560 -chrXII 988758 990532 LC_gene_6473 1 - 988758 990532 -chrXII 990483 990987 MC_gene_6474 1 - 990483 990987 -chrXII 1000131 1001823 HC_gene_6475 3 - 1000131 1001823 -chrXII 1001742 1002081 HC_gene_6476 11 - 1001742 1002081 -chrXII 1003991 1006123 HC_gene_6477 37 - 1004163 1006123 -chrXII 1007239 1011302 HC_gene_6478 15 - 1007352 1011302 -chrXII 1011392 1012090 HC_gene_6479 85 - 1011467 1012090 -chrXII 1012638 1013309 LC_gene_6480 1 - 1012638 1013309 -chrXII 1013550 1014238 HC_gene_6481 376 - 1013749 1014238 -chrXII 1015135 1017767 HC_gene_6482 24 - 1015372 1017767 -chrXII 1017827 1018933 HC_gene_6483 3410 - 1017872 1018933 -chrXII 1019208 1022280 HC_gene_6484 6 - 1019211 1022280 -chrXII 1022393 1023998 LC_gene_6485 1 - 1022393 1023998 -chrXII 1025028 1027932 HC_gene_6486 532 - 1025068 1027932 -chrXII 1027975 1028681 MC_gene_6487 1 - 1027975 1028681 -chrXII 1029841 1030612 MC_gene_6488 1 - 1029857 1030612 -chrXII 1031959 1032184 MC_gene_6489 1 - 1031959 1032184 -chrXII 1033554 1035701 LC_gene_6490 1 - 1033554 1035701 -chrXII 1038740 1041513 HC_gene_6491 96 - 1038740 1041513 -chrXII 1042222 1043045 HC_gene_6492 6 - 1042222 1043045 -chrXII 1042959 1043577 HC_gene_6493 1 - 1042959 1043577 -chrXII 1050727 1051961 MC_gene_6494 1 - 1050727 1051961 -chrXII 1052206 1053164 HC_gene_6495 66 - 1052206 1053164 -chrXII 1053360 1054693 LC_gene_6496 1 - 1053360 1054693 -chrXII 1055577 1057122 HC_gene_6497 10 - 1055613 1057122 -chrXII 1058497 1059309 MC_gene_6498 1 - 1058497 1059309 -chrXII 1059572 1061072 MC_gene_6499 2 - 1059576 1061072 -chrXII 1065340 1072815 LC_gene_6500 1 - 1065340 1072815 -chrXIII 8103 8462 MC_gene_6501 1 + 8103 8462 -chrXIII 10162 11488 HC_gene_6502 31 + 10162 11485 -chrXIII 13506 14084 HC_gene_6503 24 + 13506 14031 -chrXIII 15005 15502 LC_gene_6504 1 + 15005 15305 -chrXIII 17014 19056 HC_gene_6505 85 + 17014 18951 -chrXIII 21033 22053 MC_gene_6506 1 + 21033 22053 -chrXIII 24686 26530 HC_gene_6507 4 + 24686 26530 -chrXIII 26793 28208 HC_gene_6508 91 + 26793 28143 -chrXIII 29379 29928 LC_gene_6509 1 + 29379 29928 -chrXIII 30154 31754 HC_gene_6510 53 + 30154 31746 -chrXIII 34100 37923 HC_gene_6511 68 + 34100 37818 -chrXIII 38113 40029 HC_gene_6512 27 + 38113 39961 -chrXIII 43996 44988 HC_gene_6513 63 + 43996 44925 -chrXIII 45037 46238 HC_gene_6514 51 + 45037 46041 -chrXIII 46788 49837 HC_gene_6515 8 + 46788 49837 -chrXIII 51566 54692 HC_gene_6516 5 + 51566 54692 -chrXIII 54731 55767 HC_gene_6517 107 + 54731 55750 -chrXIII 56550 57992 HC_gene_6518 621 + 56550 57876 -chrXIII 58855 59441 MC_gene_6519 1 + 58855 59440 -chrXIII 68286 69863 HC_gene_6520 21 + 68286 69755 -chrXIII 70232 70556 HC_gene_6521 2 + 70232 70556 -chrXIII 71755 74040 HC_gene_6522 62 + 71755 74036 -chrXIII 77245 78337 HC_gene_6523 122 + 77245 78337 -chrXIII 79883 81808 HC_gene_6524 38 + 79883 81808 -chrXIII 82259 82998 HC_gene_6525 67 + 82259 82945 -chrXIII 83064 86113 HC_gene_6526 161 + 83064 85947 -chrXIII 92212 94329 HC_gene_6527 26 + 92212 94329 -chrXIII 94413 95802 HC_gene_6528 1 + 94413 95802 -chrXIII 97668 97876 HC_gene_6529 2 + 97668 97876 -chrXIII 99210 99655 MC_gene_6530 1 + 99210 99655 -chrXIII 99674 101277 HC_gene_6531 5 + 99674 101277 -chrXIII 101805 103963 HC_gene_6532 33 + 101805 103954 -chrXIII 103963 104502 MC_gene_6533 1 + 103963 104460 -chrXIII 104670 108660 HC_gene_6534 7 + 104670 108617 -chrXIII 108689 110190 HC_gene_6535 24 + 108689 110182 -chrXIII 110216 112588 HC_gene_6536 830 + 110216 112473 -chrXIII 115440 115782 MC_gene_6537 1 + 115440 115731 -chrXIII 116668 118881 LC_gene_6538 1 + 116668 118881 -chrXIII 119543 120189 HC_gene_6539 29 + 119543 120134 -chrXIII 121581 123393 HC_gene_6540 2 + 121581 123210 -chrXIII 127801 129717 MC_gene_6541 1 + 127801 129717 -chrXIII 128425 129846 MC_gene_6542 1 + 128425 129846 -chrXIII 129797 130399 MC_gene_6543 1 + 129797 130399 -chrXIII 132044 133061 MC_gene_6544 1 + 132044 133061 -chrXIII 133215 135305 HC_gene_6545 87 + 133215 135300 -chrXIII 135435 137359 HC_gene_6546 98 + 135435 137231 -chrXIII 137472 139463 HC_gene_6547 15 + 137472 139449 -chrXIII 140414 141639 HC_gene_6548 5 + 140414 141639 -chrXIII 142114 145130 HC_gene_6549 9 + 142114 145111 -chrXIII 146454 147728 HC_gene_6550 4029 + 146454 147312 -chrXIII 151813 153206 HC_gene_6551 26 + 151813 153171 -chrXIII 158709 159100 HC_gene_6552 17 + 158709 159100 -chrXIII 159348 160051 HC_gene_6553 776 + 159348 159963 -chrXIII 160123 162239 HC_gene_6554 31 + 160123 162197 -chrXIII 164612 165401 HC_gene_6555 205 + 164612 165379 -chrXIII 165537 168133 HC_gene_6556 3 + 165537 168133 -chrXIII 168797 169044 MC_gene_6557 1 + 168797 169044 -chrXIII 170370 171416 HC_gene_6558 157 + 170370 171416 -chrXIII 170971 171493 HC_gene_6559 29 + 170971 171478 -chrXIII 171527 173047 HC_gene_6560 48 + 171527 173045 -chrXIII 173117 174211 HC_gene_6561 21 + 173117 174193 -chrXIII 178382 180065 HC_gene_6562 344 + 178382 179981 -chrXIII 181390 183596 HC_gene_6563 22 + 181390 183596 -chrXIII 186580 190107 MC_gene_6564 1 + 186580 190107 -chrXIII 192782 194915 HC_gene_6565 12 + 192782 194915 -chrXIII 202160 202671 HC_gene_6566 1 + 202160 202671 -chrXIII 204445 205303 MC_gene_6567 1 + 204445 205303 -chrXIII 205620 206706 HC_gene_6568 54 + 205620 206706 -chrXIII 208832 209196 MC_gene_6569 1 + 208832 209196 -chrXIII 209449 212398 HC_gene_6570 14 + 209449 212327 -chrXIII 214149 216363 HC_gene_6571 6 + 214149 216235 -chrXIII 216416 217156 HC_gene_6572 172 + 216416 217156 -chrXIII 220107 221303 HC_gene_6573 3915 + 220107 220838 -chrXIII 221333 222881 HC_gene_6574 21 + 221333 222676 -chrXIII 225869 227002 HC_gene_6575 3827 + 225869 226760 -chrXIII 227033 230100 HC_gene_6576 348 + 227033 229711 -chrXIII 230991 233345 HC_gene_6577 15 + 230991 233324 -chrXIII 233432 234785 HC_gene_6578 61 + 233432 234746 -chrXIII 236516 239283 HC_gene_6579 23 + 236516 239241 -chrXIII 241993 242470 HC_gene_6580 2 + 241993 242439 -chrXIII 242470 243171 LC_gene_6581 1 + 242470 243171 -chrXIII 243213 244165 HC_gene_6582 10 + 243213 244165 -chrXIII 244136 246127 HC_gene_6583 6 + 244136 246127 -chrXIII 244143 247118 HC_gene_6584 639 + 244143 246956 -chrXIII 247637 251336 HC_gene_6585 31 + 247637 251272 -chrXIII 251751 252662 MC_gene_6586 1 + 251751 252662 -chrXIII 253133 254683 HC_gene_6587 1 + 253133 254683 -chrXIII 253720 256041 HC_gene_6588 91 + 253720 255994 -chrXIII 258332 259252 MC_gene_6589 1 + 258332 259252 -chrXIII 260212 261671 HC_gene_6590 11 + 260212 261660 -chrXIII 262813 263378 MC_gene_6591 1 + 262813 263378 -chrXIII 263480 266841 HC_gene_6592 4 + 263480 266841 -chrXIII 266932 268042 HC_gene_6593 248 + 266932 267911 -chrXIII 268421 268989 LC_gene_6594 1 + 268421 268989 -chrXIII 270967 271319 LC_gene_6595 1 + 270967 271319 -chrXIII 272141 273055 HC_gene_6596 666 + 272141 272903 -chrXIII 273089 273893 HC_gene_6597 43 + 273089 273791 -chrXIII 273955 275865 HC_gene_6598 18 + 273955 275728 -chrXIII 275972 277350 HC_gene_6599 30 + 275972 277339 -chrXIII 278832 279881 MC_gene_6600 1 + 278832 279881 -chrXIII 279946 280512 HC_gene_6601 6 + 279946 280512 -chrXIII 283065 283719 HC_gene_6602 5 + 283065 283719 -chrXIII 283257 283788 HC_gene_6603 9 + 283257 283788 -chrXIII 283640 286680 HC_gene_6604 54 + 283640 286680 -chrXIII 284870 286839 HC_gene_6605 55 + 284870 286839 -chrXIII 288039 290157 HC_gene_6606 481 + 288039 290157 -chrXIII 289936 290906 HC_gene_6607 7 + 289936 290733 -chrXIII 291004 295301 HC_gene_6608 184 + 291004 295104 -chrXIII 297106 298084 HC_gene_6609 13 + 297106 297999 -chrXIII 298084 298798 MC_gene_6610 1 + 298084 298482 -chrXIII 298840 300694 HC_gene_6611 107 + 298840 300539 -chrXIII 302762 303873 LC_gene_6612 1 + 302762 303873 -chrXIII 304063 307383 LC_gene_6613 1 + 304063 307383 -chrXIII 308065 308847 MC_gene_6614 1 + 308065 308847 -chrXIII 308597 309368 MC_gene_6615 1 + 308597 309368 -chrXIII 309743 311775 MC_gene_6616 1 + 309743 311775 -chrXIII 312263 313719 HC_gene_6617 2 + 312263 313719 -chrXIII 313715 315306 MC_gene_6618 1 + 313715 315306 -chrXIII 315340 317032 HC_gene_6619 3 + 315340 317018 -chrXIII 318649 319468 HC_gene_6620 184 + 318649 319327 -chrXIII 320112 321071 MC_gene_6621 1 + 320112 321071 -chrXIII 321896 323245 HC_gene_6622 49 + 321896 323245 -chrXIII 323291 324839 HC_gene_6623 12 + 323291 324839 -chrXIII 325807 327412 HC_gene_6624 152 + 325807 327386 -chrXIII 327460 328687 HC_gene_6625 37 + 327460 328685 -chrXIII 330615 332067 MC_gene_6626 3 + 330615 332057 -chrXIII 335196 337514 HC_gene_6627 12 + 335196 337466 -chrXIII 337743 339634 HC_gene_6628 49 + 337743 339433 -chrXIII 340112 340921 MC_gene_6629 1 + 340112 340921 -chrXIII 341099 341887 HC_gene_6630 70 + 341099 341777 -chrXIII 343736 344306 HC_gene_6631 4 + 343736 344249 -chrXIII 347208 348787 HC_gene_6632 1 + 347208 348610 -chrXIII 348787 349638 MC_gene_6633 1 + 348787 349638 -chrXIII 350222 350669 HC_gene_6634 6 + 350222 350669 -chrXIII 350671 351502 MC_gene_6635 1 + 350671 351440 -chrXIII 352506 353594 HC_gene_6636 54 + 352506 353594 -chrXIII 353470 355268 HC_gene_6637 114 + 353470 355062 -chrXIII 355367 357019 HC_gene_6638 99 + 355367 356996 -chrXIII 362158 362928 MC_gene_6639 1 + 362158 362928 -chrXIII 362171 363371 MC_gene_6640 1 + 362171 363371 -chrXIII 366956 368108 HC_gene_6641 55 + 366956 368108 -chrXIII 371117 371798 MC_gene_6642 1 + 371117 371798 -chrXIII 371862 372154 HC_gene_6643 4 + 371862 372154 -chrXIII 377641 379269 MC_gene_6644 3 + 377641 379120 -chrXIII 379564 380968 HC_gene_6645 28 + 379564 380876 -chrXIII 383097 386584 HC_gene_6646 57 + 383097 386584 -chrXIII 388659 391036 HC_gene_6647 282 + 388659 390906 -chrXIII 391075 391873 HC_gene_6648 72 + 391075 391860 -chrXIII 392729 394925 HC_gene_6649 42 + 392729 394895 -chrXIII 397012 399829 HC_gene_6650 24 + 397012 399678 -chrXIII 399877 401444 HC_gene_6651 16 + 399877 401352 -chrXIII 401555 404294 HC_gene_6652 9 + 401555 404260 -chrXIII 405735 407678 HC_gene_6653 6 + 405735 407678 -chrXIII 407781 410916 HC_gene_6654 57 + 407781 410781 -chrXIII 411545 412409 HC_gene_6655 822 + 411545 412397 -chrXIII 412409 412988 LC_gene_6656 1 + 412409 412988 -chrXIII 413110 413811 HC_gene_6657 24 + 413110 413811 -chrXIII 413814 416246 HC_gene_6658 21 + 413814 416150 -chrXIII 421049 421445 MC_gene_6659 1 + 421049 421445 -chrXIII 422383 423439 MC_gene_6660 1 + 422383 423439 -chrXIII 424952 426556 HC_gene_6661 190 + 424952 426394 -chrXIII 429946 431455 HC_gene_6662 5 + 429946 431455 -chrXIII 432084 432495 MC_gene_6663 1 + 432084 432495 -chrXIII 432149 432518 MC_gene_6664 1 + 432149 432518 -chrXIII 432338 433189 MC_gene_6665 1 + 432338 433189 -chrXIII 434111 434754 HC_gene_6666 4 + 434111 434754 -chrXIII 434755 436295 HC_gene_6667 848 + 434755 436164 -chrXIII 436315 438884 HC_gene_6668 1 + 436315 438884 -chrXIII 441025 442389 HC_gene_6669 9 + 441025 442312 -chrXIII 442511 442880 HC_gene_6670 1 + 442511 442852 -chrXIII 443378 445489 MC_gene_6671 1 + 443378 445489 -chrXIII 448458 450062 HC_gene_6672 24 + 448458 450062 -chrXIII 453963 455771 HC_gene_6673 45 + 453963 455665 -chrXIII 455796 459482 HC_gene_6674 337 + 455796 459445 -chrXIII 460736 462023 MC_gene_6675 1 + 460736 462023 -chrXIII 462798 463369 HC_gene_6676 5 + 462798 463285 -chrXIII 463572 463845 LC_gene_6677 1 + 463572 463845 -chrXIII 465031 465487 HC_gene_6678 33 + 465031 465438 -chrXIII 465944 466776 HC_gene_6679 2 + 465944 466776 -chrXIII 466461 467790 HC_gene_6680 1 + 466461 467106 -chrXIII 467944 468532 HC_gene_6681 12 + 467944 468401 -chrXIII 473328 473683 MC_gene_6682 1 + 473328 473659 -chrXIII 475442 475832 MC_gene_6683 1 + 475442 475832 -chrXIII 475862 477121 MC_gene_6684 1 + 475862 477121 -chrXIII 478033 479060 LC_gene_6685 1 + 478033 479060 -chrXIII 480190 480580 MC_gene_6686 1 + 480190 480580 -chrXIII 480861 481468 HC_gene_6687 151 + 480861 481458 -chrXIII 482992 483439 HC_gene_6688 1 + 482992 483439 -chrXIII 483899 486500 HC_gene_6689 492 + 483899 486413 -chrXIII 486544 490456 HC_gene_6690 62 + 486544 490329 -chrXIII 491031 492371 MC_gene_6691 1 + 491031 492371 -chrXIII 493660 493984 MC_gene_6692 1 + 493660 493984 -chrXIII 493675 494433 MC_gene_6693 1 + 493675 494092 -chrXIII 494578 494875 HC_gene_6694 1 + 494578 494867 -chrXIII 494940 496368 HC_gene_6695 36 + 494940 496353 -chrXIII 497677 499360 HC_gene_6696 9 + 497677 499326 -chrXIII 500971 501679 MC_gene_6697 1 + 500971 501679 -chrXIII 501152 501839 MC_gene_6698 1 + 501152 501839 -chrXIII 502120 503615 HC_gene_6699 12 + 502120 503613 -chrXIII 503711 504205 MC_gene_6700 1 + 503711 504205 -chrXIII 503862 504642 MC_gene_6701 1 + 503862 504642 -chrXIII 505111 507443 HC_gene_6702 41 + 505111 507415 -chrXIII 507542 510052 MC_gene_6703 1 + 507542 509743 -chrXIII 511269 511948 HC_gene_6704 1765 + 511269 511816 -chrXIII 511986 512393 HC_gene_6705 2 + 511986 512202 -chrXIII 512806 513425 HC_gene_6706 38 + 512806 513355 -chrXIII 513563 514068 HC_gene_6707 299 + 513563 514049 -chrXIII 514184 517369 HC_gene_6708 9 + 514184 517369 -chrXIII 517463 520665 HC_gene_6709 41 + 517463 520643 -chrXIII 522180 522833 HC_gene_6710 3 + 522180 522833 -chrXIII 523648 527666 HC_gene_6711 16 + 523648 527582 -chrXIII 527762 531969 HC_gene_6712 11 + 527762 531969 -chrXIII 531286 533239 HC_gene_6713 151 + 531286 533165 -chrXIII 534944 535866 HC_gene_6714 3 + 534944 535866 -chrXIII 537807 538941 HC_gene_6715 50 + 537807 538708 -chrXIII 540994 542953 HC_gene_6716 34 + 540994 542953 -chrXIII 545154 547475 HC_gene_6717 69 + 545154 547473 -chrXIII 547660 550144 HC_gene_6718 15 + 547660 550024 -chrXIII 551905 553254 HC_gene_6719 2098 + 551905 553254 -chrXIII 553228 554681 HC_gene_6720 20 + 553228 554560 -chrXIII 556340 557328 LC_gene_6721 1 + 556340 557328 -chrXIII 557493 558027 MC_gene_6722 1 + 557493 558027 -chrXIII 559173 562143 HC_gene_6723 214 + 559173 561968 -chrXIII 562679 562931 HC_gene_6724 1 + 562679 562885 -chrXIII 563051 564362 HC_gene_6725 77 + 563051 564266 -chrXIII 564390 567380 HC_gene_6726 28 + 564390 567380 -chrXIII 568330 570377 HC_gene_6727 13 + 568330 570337 -chrXIII 571151 571570 MC_gene_6728 1 + 571151 571570 -chrXIII 572239 572892 HC_gene_6729 130 + 572239 572802 -chrXIII 574187 574928 LC_gene_6730 1 + 574187 574928 -chrXIII 575017 577559 HC_gene_6731 4 + 575017 577559 -chrXIII 577667 578982 HC_gene_6732 111 + 577667 578982 -chrXIII 584022 584314 MC_gene_6733 1 + 584022 584312 -chrXIII 585303 585732 LC_gene_6734 1 + 585303 585732 -chrXIII 588579 589407 MC_gene_6735 1 + 588579 589407 -chrXIII 590366 591668 MC_gene_6736 2 + 590366 591668 -chrXIII 592926 593354 MC_gene_6737 1 + 592926 593339 -chrXIII 594865 597908 HC_gene_6738 3 + 594865 597900 -chrXIII 600505 600985 MC_gene_6739 1 + 600505 600985 -chrXIII 601414 602162 MC_gene_6740 1 + 601414 602162 -chrXIII 603217 603800 HC_gene_6741 3 + 603217 603800 -chrXIII 606104 608258 HC_gene_6742 14 + 606104 608246 -chrXIII 608518 610203 HC_gene_6743 274 + 608518 610093 -chrXIII 610421 611023 HC_gene_6744 18 + 610421 611023 -chrXIII 611078 611373 MC_gene_6745 1 + 611078 611373 -chrXIII 611630 616059 HC_gene_6746 5 + 611630 616059 -chrXIII 616408 618349 HC_gene_6747 28 + 616408 618307 -chrXIII 618444 619570 HC_gene_6748 113 + 618444 619566 -chrXIII 619672 622323 HC_gene_6749 8 + 619672 622244 -chrXIII 623421 627084 HC_gene_6750 100 + 623421 626839 -chrXIII 627166 627472 LC_gene_6751 1 + 627166 627472 -chrXIII 628131 628948 HC_gene_6752 117 + 628131 628898 -chrXIII 629018 632110 HC_gene_6753 7 + 629018 632030 -chrXIII 632326 634733 HC_gene_6754 2211 + 632326 634554 -chrXIII 634733 636146 LC_gene_6755 1 + 634733 636146 -chrXIII 637392 640723 HC_gene_6756 24 + 637392 640686 -chrXIII 645641 646969 HC_gene_6757 57 + 645641 646937 -chrXIII 647023 649361 HC_gene_6758 11 + 647023 649361 -chrXIII 650024 651032 HC_gene_6759 44 + 650024 650936 -chrXIII 651126 652236 HC_gene_6760 1301 + 651126 652011 -chrXIII 652273 653087 HC_gene_6761 51 + 652273 652832 -chrXIII 653087 653904 LC_gene_6762 1 + 653087 653904 -chrXIII 653940 654956 HC_gene_6763 255 + 653940 654956 -chrXIII 655008 658493 HC_gene_6764 17 + 655008 658447 -chrXIII 659471 662051 HC_gene_6765 7 + 659471 661760 -chrXIII 662119 664508 HC_gene_6766 33 + 662119 664381 -chrXIII 664658 666099 HC_gene_6767 208 + 664658 665870 -chrXIII 667510 668394 HC_gene_6768 624 + 667510 668269 -chrXIII 668425 670085 HC_gene_6769 248 + 668425 669986 -chrXIII 675007 675681 HC_gene_6770 6 + 675007 675676 -chrXIII 675740 677077 HC_gene_6771 17 + 675740 677077 -chrXIII 684191 685909 HC_gene_6772 58 + 684191 685909 -chrXIII 686430 687459 LC_gene_6773 1 + 686430 687459 -chrXIII 687491 688973 HC_gene_6774 20 + 687491 688941 -chrXIII 689063 690927 HC_gene_6775 14 + 689063 690927 -chrXIII 693327 695298 HC_gene_6776 7 + 693327 695191 -chrXIII 695329 696741 HC_gene_6777 84 + 695329 696741 -chrXIII 696770 698592 HC_gene_6778 118 + 696770 698592 -chrXIII 701729 703690 HC_gene_6779 691 + 701729 703452 -chrXIII 707088 712206 HC_gene_6780 31 + 707088 712165 -chrXIII 712296 713950 HC_gene_6781 67 + 712296 713922 -chrXIII 716490 718579 HC_gene_6782 19 + 716490 718574 -chrXIII 720463 720861 LC_gene_6783 1 + 720463 720861 -chrXIII 721414 721919 MC_gene_6784 1 + 721414 721810 -chrXIII 724617 725836 HC_gene_6785 24 + 724617 725761 -chrXIII 731440 732160 HC_gene_6786 11 + 731440 732160 -chrXIII 732380 733453 HC_gene_6787 2066 + 732380 733439 -chrXIII 733515 736824 HC_gene_6788 13 + 733515 736824 -chrXIII 739167 740076 HC_gene_6789 32 + 739167 740047 -chrXIII 740172 741457 HC_gene_6790 30 + 740172 741419 -chrXIII 742959 743658 HC_gene_6791 202 + 742959 743658 -chrXIII 743676 746111 HC_gene_6792 23 + 743676 746068 -chrXIII 746243 747862 HC_gene_6793 118 + 746243 747814 -chrXIII 749924 750413 LC_gene_6794 1 + 749924 750413 -chrXIII 751814 753126 HC_gene_6795 408 + 751814 752958 -chrXIII 754394 754821 MC_gene_6796 1 + 754394 754821 -chrXIII 758434 758958 HC_gene_6797 3 + 758434 758958 -chrXIII 759578 762324 HC_gene_6798 287 + 759578 762064 -chrXIII 763339 764265 HC_gene_6799 14 + 763339 764265 -chrXIII 770756 772871 HC_gene_6800 29 + 770756 772871 -chrXIII 774126 775216 HC_gene_6801 2915 + 774126 775216 -chrXIII 775235 775914 MC_gene_6802 1 + 775235 775901 -chrXIII 775975 776856 HC_gene_6803 6 + 775975 776856 -chrXIII 777336 778928 HC_gene_6804 130 + 777336 778844 -chrXIII 779007 779192 MC_gene_6805 1 + 779007 779192 -chrXIII 784515 785061 HC_gene_6806 7 + 784515 785061 -chrXIII 789007 789297 MC_gene_6807 1 + 789007 789297 -chrXIII 789056 789449 MC_gene_6808 1 + 789056 789449 -chrXIII 789420 790124 MC_gene_6809 1 + 789420 790124 -chrXIII 793681 794915 HC_gene_6810 39 + 793681 794915 -chrXIII 794891 795711 HC_gene_6811 133 + 794891 795691 -chrXIII 795754 796758 HC_gene_6812 201 + 795754 796702 -chrXIII 797741 798456 MC_gene_6813 1 + 797741 798456 -chrXIII 798505 801626 HC_gene_6814 64 + 798505 801587 -chrXIII 801658 802882 HC_gene_6815 62 + 801658 802861 -chrXIII 804424 805303 HC_gene_6816 144 + 804424 805221 -chrXIII 807706 808167 MC_gene_6817 1 + 807706 808131 -chrXIII 809120 809612 HC_gene_6818 12 + 809120 809604 -chrXIII 811158 812915 MC_gene_6819 1 + 811158 812915 -chrXIII 815258 815643 MC_gene_6820 1 + 815258 815643 -chrXIII 818806 820112 HC_gene_6821 304 + 818806 820055 -chrXIII 820135 822588 HC_gene_6822 22 + 820135 822576 -chrXIII 822721 827004 HC_gene_6823 15 + 822721 827003 -chrXIII 830073 830918 MC_gene_6824 1 + 830073 830918 -chrXIII 832278 833513 HC_gene_6825 56 + 832278 833513 -chrXIII 833519 835215 LC_gene_6826 1 + 833519 835215 -chrXIII 836977 837816 MC_gene_6827 1 + 836977 837816 -chrXIII 837162 837841 MC_gene_6828 1 + 837162 837823 -chrXIII 838141 840096 HC_gene_6829 21 + 838141 840096 -chrXIII 841923 842461 HC_gene_6830 192 + 841923 842355 -chrXIII 845557 848602 HC_gene_6831 8 + 845557 848545 -chrXIII 848660 850313 HC_gene_6832 58 + 848660 850313 -chrXIII 851914 852520 LC_gene_6833 1 + 851914 852520 -chrXIII 852550 854648 HC_gene_6834 104 + 852550 854593 -chrXIII 854763 855606 HC_gene_6835 307 + 854763 855397 -chrXIII 856963 858315 HC_gene_6836 17 + 856963 858292 -chrXIII 859240 861325 MC_gene_6837 1 + 859240 861291 -chrXIII 861442 861820 MC_gene_6838 1 + 861442 861812 -chrXIII 861848 863707 HC_gene_6839 554 + 861848 863628 -chrXIII 863795 864615 HC_gene_6840 286 + 863795 864406 -chrXIII 864655 864928 LC_gene_6841 1 + 864655 864928 -chrXIII 867609 868002 LC_gene_6842 1 + 867609 868002 -chrXIII 869844 870113 MC_gene_6843 1 + 869844 870113 -chrXIII 872991 874550 HC_gene_6844 90 + 872991 874448 -chrXIII 874775 878869 HC_gene_6845 23 + 874775 878866 -chrXIII 880817 882329 MC_gene_6846 2 + 880817 882329 -chrXIII 886915 889138 HC_gene_6847 3344 + 886915 888826 -chrXIII 892515 892777 MC_gene_6848 1 + 892515 892777 -chrXIII 898366 899369 HC_gene_6849 68 + 898366 899343 -chrXIII 901665 902727 HC_gene_6850 471 + 901665 902727 -chrXIII 902756 903964 HC_gene_6851 235 + 902756 903948 -chrXIII 904168 906060 HC_gene_6852 56 + 904168 906022 -chrXIII 906277 906869 LC_gene_6853 1 + 906277 906869 -chrXIII 910571 910968 HC_gene_6854 3 + 910571 910968 -chrXIII 912444 914797 HC_gene_6855 16 + 912444 914797 -chrXIII 915459 916091 HC_gene_6856 5 + 915459 915999 -chrXIII 916111 917200 MC_gene_6857 1 + 916111 917142 -chrXIII 8777 9853 MC_gene_6858 2 - 8777 9853 -chrXIII 11316 13276 HC_gene_6859 86 - 11393 13276 -chrXIII 14127 14764 HC_gene_6860 306 - 14203 14764 -chrXIII 14870 16725 HC_gene_6861 42 - 14929 16725 -chrXIII 18674 20482 HC_gene_6862 220 - 18843 20482 -chrXIII 20508 21723 HC_gene_6863 316 - 20678 21723 -chrXIII 21796 23877 HC_gene_6864 107 - 21921 23877 -chrXIII 25868 26819 MC_gene_6865 1 - 25868 26819 -chrXIII 27859 29868 HC_gene_6866 118 - 27909 29868 -chrXIII 29750 31696 MC_gene_6867 1 - 29750 31696 -chrXIII 31699 32015 MC_gene_6868 1 - 31699 32015 -chrXIII 32845 33811 MC_gene_6869 1 - 32845 33811 -chrXIII 36954 37711 LC_gene_6870 1 - 36954 37711 -chrXIII 39763 41866 HC_gene_6871 103 - 40000 41866 -chrXIII 41889 43761 HC_gene_6872 29 - 41970 43761 -chrXIII 45972 46500 HC_gene_6873 20 - 45978 46500 -chrXIII 49585 51005 HC_gene_6874 231 - 49588 51005 -chrXIII 55011 56283 HC_gene_6875 36 - 55011 56283 -chrXIII 57707 58719 HC_gene_6876 157 - 57745 58719 -chrXIII 58874 62262 HC_gene_6877 4 - 58874 62262 -chrXIII 62345 63453 HC_gene_6878 6 - 62372 63453 -chrXIII 64067 67587 HC_gene_6879 2 - 64610 67587 -chrXIII 67615 69688 HC_gene_6880 1 - 67991 69688 -chrXIII 69660 70129 HC_gene_6881 134 - 69660 70129 -chrXIII 74248 77006 HC_gene_6882 10 - 74250 77006 -chrXIII 77779 78166 MC_gene_6883 1 - 77779 78166 -chrXIII 78186 79704 HC_gene_6884 58 - 78237 79704 -chrXIII 80879 82140 HC_gene_6885 1 - 80902 82140 -chrXIII 82401 82839 LC_gene_6886 1 - 82503 82839 -chrXIII 85612 86761 HC_gene_6887 367 - 85885 86761 -chrXIII 86963 91045 MC_gene_6888 3 - 86987 91045 -chrXIII 92696 94016 LC_gene_6889 1 - 92696 94016 -chrXIII 94308 95475 HC_gene_6890 10 - 94331 95475 -chrXIII 95608 97522 HC_gene_6891 85 - 95671 97522 -chrXIII 97676 99433 HC_gene_6892 179 - 97765 99433 -chrXIII 99583 100678 MC_gene_6893 1 - 99583 100678 -chrXIII 103628 104207 HC_gene_6894 670 - 103820 104207 -chrXIII 110357 110851 MC_gene_6895 1 - 110416 110851 -chrXIII 112275 115364 HC_gene_6896 4 - 112282 115364 -chrXIII 115574 119118 HC_gene_6897 25 - 115586 119118 -chrXIII 119839 121351 HC_gene_6898 557 - 119989 121351 -chrXIII 121325 123014 HC_gene_6899 3 - 121325 123014 -chrXIII 123034 124190 HC_gene_6900 3810 - 123148 124190 -chrXIII 124501 129538 HC_gene_6901 129 - 124582 129538 -chrXIII 129460 131649 HC_gene_6902 45 - 129460 131649 -chrXIII 131663 133259 MC_gene_6903 1 - 131663 133259 -chrXIII 138313 140226 HC_gene_6904 39 - 138313 140226 -chrXIII 140315 140930 MC_gene_6905 1 - 140315 140930 -chrXIII 141506 141954 HC_gene_6906 4 - 141527 141954 -chrXIII 144799 145938 HC_gene_6907 31 - 144829 145938 -chrXIII 147372 148716 HC_gene_6908 100 - 147433 148716 -chrXIII 148862 151667 HC_gene_6909 30 - 148862 151667 -chrXIII 153070 158313 HC_gene_6910 2 - 153087 158313 -chrXIII 158673 159789 MC_gene_6911 1 - 158673 159789 -chrXIII 161761 164270 HC_gene_6912 617 - 162079 164270 -chrXIII 164922 166906 MC_gene_6913 1 - 165355 166906 -chrXIII 168884 169836 HC_gene_6914 124 - 168991 169836 -chrXIII 171360 171854 MC_gene_6915 1 - 171360 171854 -chrXIII 171469 172779 MC_gene_6916 1 - 171469 172779 -chrXIII 172989 173300 MC_gene_6917 1 - 172989 173300 -chrXIII 174098 174602 HC_gene_6918 9 - 174098 174602 -chrXIII 176013 178178 HC_gene_6919 1 - 176049 178178 -chrXIII 179654 181087 LC_gene_6920 1 - 179654 181087 -chrXIII 183745 183923 LC_gene_6921 1 - 183745 183923 -chrXIII 184140 185144 MC_gene_6922 1 - 184140 185144 -chrXIII 190063 191930 HC_gene_6923 33 - 190080 191930 -chrXIII 193473 194689 MC_gene_6924 1 - 193473 194689 -chrXIII 194689 195953 HC_gene_6925 37 - 194871 195953 -chrXIII 202489 205468 HC_gene_6926 45 - 202596 205468 -chrXIII 206136 209035 HC_gene_6927 25 - 206153 209035 -chrXIII 212187 213961 HC_gene_6928 17 - 212187 213961 -chrXIII 217423 219853 MC_gene_6929 1 - 217423 219853 -chrXIII 219879 220725 MC_gene_6930 1 - 219937 220725 -chrXIII 220725 222626 MC_gene_6931 1 - 220760 222626 -chrXIII 221222 222631 MC_gene_6932 1 - 221222 222631 -chrXIII 222631 223848 HC_gene_6933 2723 - 222640 223848 -chrXIII 224197 225408 HC_gene_6934 36 - 224297 225408 -chrXIII 226810 228709 HC_gene_6935 27 - 226932 228709 -chrXIII 229574 230794 HC_gene_6936 46 - 229574 230794 -chrXIII 231047 233226 LC_gene_6937 1 - 231047 233226 -chrXIII 233209 233635 HC_gene_6938 1 - 233209 233635 -chrXIII 234416 236084 HC_gene_6939 79 - 234641 236084 -chrXIII 236911 238911 MC_gene_6940 1 - 236911 238911 -chrXIII 239132 241800 HC_gene_6941 61 - 239133 241800 -chrXIII 241836 243060 HC_gene_6942 51 - 241836 243060 -chrXIII 244855 245492 LC_gene_6943 1 - 244905 245492 -chrXIII 246739 247414 HC_gene_6944 64 - 246775 247414 -chrXIII 251010 251559 HC_gene_6945 205 - 251012 251559 -chrXIII 251592 253238 HC_gene_6946 659 - 251711 253238 -chrXIII 255970 258566 HC_gene_6947 9 - 256016 258566 -chrXIII 258665 258959 HC_gene_6948 25 - 258692 258959 -chrXIII 259302 260080 HC_gene_6949 2 - 259358 260080 -chrXIII 261397 262870 HC_gene_6950 274 - 261565 262870 -chrXIII 262743 264247 LC_gene_6951 1 - 262743 264247 -chrXIII 265472 266786 HC_gene_6952 10 - 265472 266786 -chrXIII 266749 267481 HC_gene_6953 5 - 266749 267481 -chrXIII 268589 271521 HC_gene_6954 28 - 268915 271521 -chrXIII 271557 271906 HC_gene_6955 10 - 271579 271906 -chrXIII 271939 272581 LC_gene_6956 1 - 271939 272581 -chrXIII 273208 273771 MC_gene_6957 1 - 273210 273771 -chrXIII 275620 276104 MC_gene_6958 1 - 275620 276104 -chrXIII 277402 279740 HC_gene_6959 20 - 277455 279740 -chrXIII 280106 282633 HC_gene_6960 62 - 280254 282633 -chrXIII 282671 283608 HC_gene_6961 4 - 282671 283608 -chrXIII 284271 284618 MC_gene_6962 1 - 284273 284618 -chrXIII 284639 285429 LC_gene_6963 1 - 284639 285429 -chrXIII 286631 287111 MC_gene_6964 1 - 286631 287111 -chrXIII 288004 289777 LC_gene_6965 1 - 288004 289777 -chrXIII 294959 296787 HC_gene_6966 12 - 294972 296787 -chrXIII 297883 298579 LC_gene_6967 1 - 297883 298579 -chrXIII 300439 302592 HC_gene_6968 90 - 300697 302592 -chrXIII 303103 303974 HC_gene_6969 31 - 303113 303974 -chrXIII 305196 306019 HC_gene_6970 4 - 305731 306019 -chrXIII 308025 308797 LC_gene_6971 1 - 308025 308797 -chrXIII 309298 310079 LC_gene_6972 1 - 309298 310079 -chrXIII 311363 312034 HC_gene_6973 44 - 311464 312034 -chrXIII 313653 314973 MC_gene_6974 1 - 313653 314973 -chrXIII 316309 316813 LC_gene_6975 1 - 316309 316813 -chrXIII 316886 318476 HC_gene_6976 34 - 316891 318476 -chrXIII 319374 321040 HC_gene_6977 6 - 319381 321040 -chrXIII 321285 321768 LC_gene_6978 1 - 321285 321768 -chrXIII 323070 323709 MC_gene_6979 1 - 323070 323709 -chrXIII 324130 325617 HC_gene_6980 28 - 324157 325617 -chrXIII 328236 330270 HC_gene_6981 30 - 328236 330270 -chrXIII 331202 331900 MC_gene_6982 1 - 331202 331900 -chrXIII 331997 334815 HC_gene_6983 116 - 332039 334815 -chrXIII 335295 337515 LC_gene_6984 1 - 335295 337515 -chrXIII 339309 340910 HC_gene_6985 3 - 339309 340910 -chrXIII 341684 343563 HC_gene_6986 11 - 341696 343563 -chrXIII 344054 346993 HC_gene_6987 32 - 344107 346993 -chrXIII 347093 349681 HC_gene_6988 588 - 347382 349681 -chrXIII 350842 352201 HC_gene_6989 19 - 350842 352201 -chrXIII 352384 353127 HC_gene_6990 10 - 352477 353127 -chrXIII 354714 355140 MC_gene_6991 1 - 354714 355140 -chrXIII 356851 358394 HC_gene_6992 1 - 356851 358394 -chrXIII 363248 366781 HC_gene_6993 65 - 363282 366781 -chrXIII 367886 370552 HC_gene_6994 49 - 368014 370552 -chrXIII 372056 372325 MC_gene_6995 1 - 372056 372325 -chrXIII 377602 379158 MC_gene_6996 3 - 377602 379158 -chrXIII 379751 382899 HC_gene_6997 1 - 380224 382899 -chrXIII 385983 387051 HC_gene_6998 11 - 385995 387051 -chrXIII 387189 388326 HC_gene_6999 26 - 387189 388326 -chrXIII 388654 390971 HC_gene_7000 2 - 388654 390971 -chrXIII 391489 392537 HC_gene_7001 50 - 391489 392537 -chrXIII 394750 396396 HC_gene_7002 232 - 394873 396396 -chrXIII 396495 397730 LC_gene_7003 1 - 396772 397730 -chrXIII 398516 399247 MC_gene_7004 1 - 398516 399247 -chrXIII 399247 400080 MC_gene_7005 1 - 399446 400080 -chrXIII 401161 401556 LC_gene_7006 1 - 401161 401556 -chrXIII 404225 406141 HC_gene_7007 52 - 404234 406141 -chrXIII 407562 408598 MC_gene_7008 1 - 407562 408598 -chrXIII 408492 408819 MC_gene_7009 1 - 408492 408819 -chrXIII 409340 410314 MC_gene_7010 1 - 409340 410314 -chrXIII 410479 411324 HC_gene_7011 378 - 410691 411324 -chrXIII 411770 412900 HC_gene_7012 81 - 411801 412900 -chrXIII 412960 413484 HC_gene_7013 409 - 412963 413484 -chrXIII 416067 420109 HC_gene_7014 17 - 416067 420109 -chrXIII 420414 420655 MC_gene_7015 1 - 420414 420655 -chrXIII 421180 422236 HC_gene_7016 55 - 421187 422236 -chrXIII 422361 424736 HC_gene_7017 19 - 422361 424736 -chrXIII 426239 429707 HC_gene_7018 9 - 426243 429707 -chrXIII 429889 430367 MC_gene_7019 1 - 429889 430367 -chrXIII 429894 431234 MC_gene_7020 2 - 429894 431234 -chrXIII 433087 433541 HC_gene_7021 4 - 433087 433541 -chrXIII 433561 434020 MC_gene_7022 1 - 433565 434020 -chrXIII 435938 436515 LC_gene_7023 1 - 435938 436515 -chrXIII 442044 443165 HC_gene_7024 4 - 442047 443165 -chrXIII 443197 445197 HC_gene_7025 51 - 443201 445197 -chrXIII 445386 448286 HC_gene_7026 79 - 445398 448286 -chrXIII 449760 451423 HC_gene_7027 119 - 449880 451423 -chrXIII 451481 453750 HC_gene_7028 58 - 451514 453750 -chrXIII 456968 457582 HC_gene_7029 3 - 456968 457582 -chrXIII 459326 460558 HC_gene_7030 26 - 459357 460558 -chrXIII 460727 462687 HC_gene_7031 17 - 460727 462687 -chrXIII 462796 463420 MC_gene_7032 1 - 462808 463420 -chrXIII 463133 463658 MC_gene_7033 1 - 463133 463658 -chrXIII 463658 464851 HC_gene_7034 236 - 463669 464851 -chrXIII 465134 465658 HC_gene_7035 3 - 465137 465658 -chrXIII 465679 466220 LC_gene_7036 1 - 465786 466220 -chrXIII 468246 469030 MC_gene_7037 1 - 468246 469030 -chrXIII 469564 472696 HC_gene_7038 130 - 469691 472696 -chrXIII 472729 475523 HC_gene_7039 19 - 472729 475523 -chrXIII 475741 480496 HC_gene_7040 96 - 475745 480496 -chrXIII 480525 480688 MC_gene_7041 1 - 480536 480688 -chrXIII 481217 482075 MC_gene_7042 2 - 481220 482075 -chrXIII 482135 482409 MC_gene_7043 1 - 482185 482409 -chrXIII 482195 482700 MC_gene_7044 1 - 482195 482700 -chrXIII 482262 482931 MC_gene_7045 1 - 482262 482931 -chrXIII 483349 483730 HC_gene_7046 1 - 483367 483730 -chrXIII 486181 486503 MC_gene_7047 1 - 486181 486503 -chrXIII 490317 492016 HC_gene_7048 77 - 490319 492016 -chrXIII 492228 493875 HC_gene_7049 20 - 492228 493875 -chrXIII 493916 494616 HC_gene_7050 78 - 493916 494616 -chrXIII 494666 496163 MC_gene_7051 1 - 494783 496163 -chrXIII 496235 497480 HC_gene_7052 25 - 496270 497480 -chrXIII 499026 501920 HC_gene_7053 3644 - 499245 501920 -chrXIII 502036 503640 MC_gene_7054 1 - 502036 503640 -chrXIII 504518 504883 MC_gene_7055 1 - 504518 504883 -chrXIII 505113 506413 LC_gene_7056 1 - 505113 506413 -chrXIII 507317 509329 HC_gene_7057 423 - 507394 509329 -chrXIII 509674 510376 HC_gene_7058 126 - 509679 510376 -chrXIII 512257 513350 MC_gene_7059 1 - 512261 513350 -chrXIII 513277 513819 MC_gene_7060 1 - 513277 513819 -chrXIII 517216 517518 MC_gene_7061 1 - 517216 517518 -chrXIII 520628 523447 HC_gene_7062 35 - 520669 523447 -chrXIII 526875 527464 LC_gene_7063 1 - 526875 527464 -chrXIII 531707 532246 HC_gene_7064 2 - 531783 532246 -chrXIII 532895 535645 HC_gene_7065 324 - 533004 535645 -chrXIII 535946 537038 MC_gene_7066 1 - 535946 537038 -chrXIII 538562 540625 HC_gene_7067 27 - 538562 540625 -chrXIII 542807 544992 HC_gene_7068 9 - 542848 544992 -chrXIII 545200 545573 LC_gene_7069 1 - 545200 545573 -chrXIII 549742 551222 HC_gene_7070 3409 - 549937 551222 -chrXIII 554312 556673 HC_gene_7071 237 - 554463 556673 -chrXIII 556568 556927 HC_gene_7072 6 - 556568 556927 -chrXIII 557070 558563 HC_gene_7073 781 - 557380 558563 -chrXIII 559707 560668 HC_gene_7074 8 - 559707 560668 -chrXIII 561782 562916 HC_gene_7075 99 - 561808 562916 -chrXIII 563649 564198 MC_gene_7076 1 - 563658 564198 -chrXIII 565716 568210 HC_gene_7077 3 - 565794 568210 -chrXIII 570158 571140 HC_gene_7078 18 - 570184 571140 -chrXIII 571146 572056 HC_gene_7079 38 - 571146 572056 -chrXIII 573109 574878 HC_gene_7080 9 - 573109 574878 -chrXIII 575760 577456 MC_gene_7081 1 - 575760 577456 -chrXIII 578609 584088 HC_gene_7082 3 - 578609 584088 -chrXIII 584139 586533 MC_gene_7083 1 - 584146 586533 -chrXIII 586896 589687 HC_gene_7084 13 - 586896 589687 -chrXIII 589936 592743 HC_gene_7085 15 - 589950 592743 -chrXIII 593141 594694 HC_gene_7086 13 - 593141 594694 -chrXIII 596456 599265 HC_gene_7087 9 - 596458 599265 -chrXIII 599293 601197 HC_gene_7088 12 - 599293 601197 -chrXIII 601365 603307 HC_gene_7089 17 - 601498 603307 -chrXIII 603450 605717 HC_gene_7090 32 - 603614 605717 -chrXIII 605861 606530 HC_gene_7091 2 - 605861 606530 -chrXIII 608591 609819 MC_gene_7092 1 - 608591 609819 -chrXIII 609994 610970 HC_gene_7093 66 - 609994 610970 -chrXIII 611303 611928 LC_gene_7094 1 - 611343 611928 -chrXIII 615971 616273 HC_gene_7095 18 - 615971 616273 -chrXIII 618396 619475 HC_gene_7096 13 - 618396 619475 -chrXIII 620768 625281 HC_gene_7097 116 - 620768 625281 -chrXIII 625446 626381 MC_gene_7098 1 - 625446 626381 -chrXIII 626568 627875 HC_gene_7099 203 - 626639 627875 -chrXIII 628241 628747 MC_gene_7100 1 - 628460 628747 -chrXIII 634285 636007 HC_gene_7101 5 - 634449 636007 -chrXIII 636027 637079 HC_gene_7102 84 - 636177 637079 -chrXIII 640714 645411 HC_gene_7103 4 - 640735 645411 -chrXIII 645307 646615 LC_gene_7104 1 - 645307 646615 -chrXIII 649498 650838 LC_gene_7105 1 - 649498 650838 -chrXIII 651372 651952 LC_gene_7106 1 - 651383 651952 -chrXIII 652112 653258 HC_gene_7107 112 - 652116 653258 -chrXIII 653969 654660 MC_gene_7108 1 - 653969 654660 -chrXIII 654270 654731 MC_gene_7109 1 - 654270 654731 -chrXIII 654881 656099 HC_gene_7110 4 - 654881 656099 -chrXIII 656207 657206 LC_gene_7111 1 - 656207 657206 -chrXIII 658179 659232 HC_gene_7112 109 - 658195 659232 -chrXIII 660223 661547 LC_gene_7113 1 - 660225 661547 -chrXIII 661525 661925 MC_gene_7114 1 - 661525 661925 -chrXIII 663205 664322 LC_gene_7115 1 - 663205 664322 -chrXIII 665608 667702 HC_gene_7116 26 - 665657 667702 -chrXIII 667722 668238 MC_gene_7117 1 - 667778 668238 -chrXIII 669708 671376 HC_gene_7118 3 - 669757 671376 -chrXIII 671396 674925 HC_gene_7119 785 - 671551 674925 -chrXIII 675563 676654 MC_gene_7120 1 - 675563 676654 -chrXIII 675746 677016 MC_gene_7121 1 - 675746 677016 -chrXIII 676954 677811 MC_gene_7122 3 - 676954 677811 -chrXIII 679688 680004 MC_gene_7123 1 - 679688 680004 -chrXIII 680100 682579 MC_gene_7124 1 - 680100 682579 -chrXIII 681116 684000 MC_gene_7125 1 - 681116 684000 -chrXIII 685731 687309 HC_gene_7126 32 - 685741 687309 -chrXIII 687424 688847 HC_gene_7127 8 - 687443 688847 -chrXIII 690227 693190 HC_gene_7128 22 - 690227 693190 -chrXIII 695329 695936 MC_gene_7129 1 - 695329 695936 -chrXIII 698028 701215 HC_gene_7130 48 - 698028 701215 -chrXIII 703358 706945 HC_gene_7131 8 - 703358 706945 -chrXIII 709990 710840 MC_gene_7132 1 - 709990 710840 -chrXIII 710953 711713 LC_gene_7133 1 - 710953 711713 -chrXIII 712169 712727 MC_gene_7134 1 - 712169 712727 -chrXIII 713810 715456 HC_gene_7135 46 - 713833 715456 -chrXIII 715511 716338 HC_gene_7136 80 - 715550 716338 -chrXIII 717829 719496 MC_gene_7137 1 - 717829 719496 -chrXIII 718071 720704 MC_gene_7138 1 - 718071 720704 -chrXIII 720724 721425 HC_gene_7139 165 - 720800 721425 -chrXIII 721362 722429 HC_gene_7140 293 - 721362 722429 -chrXIII 722471 724433 HC_gene_7141 28 - 722512 724433 -chrXIII 724669 725599 LC_gene_7142 1 - 724669 725599 -chrXIII 725599 731226 HC_gene_7143 198 - 725627 731226 -chrXIII 731409 732101 HC_gene_7144 35 - 731464 732101 -chrXIII 735127 736140 LC_gene_7145 1 - 735127 736140 -chrXIII 738141 738964 LC_gene_7146 1 - 738141 738964 -chrXIII 740183 740761 LC_gene_7147 1 - 740183 740761 -chrXIII 741120 742760 HC_gene_7148 337 - 741337 742760 -chrXIII 746888 747632 LC_gene_7149 1 - 746888 747632 -chrXIII 747662 747958 MC_gene_7150 1 - 747723 747958 -chrXIII 748026 749728 HC_gene_7151 21 - 748111 749728 -chrXIII 749828 751633 HC_gene_7152 21 - 749877 751633 -chrXIII 752768 754242 HC_gene_7153 2223 - 753101 754242 -chrXIII 754380 756278 HC_gene_7154 267 - 754623 756278 -chrXIII 757124 757626 LC_gene_7155 1 - 757124 757626 -chrXIII 758124 759331 HC_gene_7156 184 - 758400 759331 -chrXIII 761687 763248 HC_gene_7157 198 - 761871 763248 -chrXIII 763289 766004 LC_gene_7158 1 - 763289 766004 -chrXIII 766026 768110 HC_gene_7159 1 - 766068 768110 -chrXIII 768689 770499 MC_gene_7160 3 - 768689 770499 -chrXIII 772761 773563 HC_gene_7161 4 - 772761 773563 -chrXIII 773618 774013 MC_gene_7162 1 - 773644 774013 -chrXIII 774368 775069 MC_gene_7163 1 - 774368 775069 -chrXIII 775130 777203 HC_gene_7164 92 - 775130 777203 -chrXIII 778571 779165 HC_gene_7165 378 - 778665 779165 -chrXIII 779243 782420 HC_gene_7166 2 - 779281 782420 -chrXIII 782444 784330 HC_gene_7167 14 - 782562 784330 -chrXIII 784464 788943 HC_gene_7168 5 - 784568 788943 -chrXIII 788976 789865 HC_gene_7169 1218 - 789055 789865 -chrXIII 790010 793540 HC_gene_7170 37 - 790057 793540 -chrXIII 795414 797914 HC_gene_7171 13 - 795414 797914 -chrXIII 797957 798352 MC_gene_7172 1 - 797964 798352 -chrXIII 801474 801929 MC_gene_7173 1 - 801474 801929 -chrXIII 802604 804265 HC_gene_7174 12 - 802725 804265 -chrXIII 805217 806565 HC_gene_7175 21 - 805217 806565 -chrXIII 806719 808113 HC_gene_7176 67 - 806730 808113 -chrXIII 808393 808918 HC_gene_7177 33 - 808482 808918 -chrXIII 809334 810889 HC_gene_7178 311 - 809453 810889 -chrXIII 811146 814169 HC_gene_7179 10 - 811154 814169 -chrXIII 814298 815359 HC_gene_7180 24 - 814299 815359 -chrXIII 815532 818633 HC_gene_7181 4 - 815556 818633 -chrXIII 819443 820493 LC_gene_7182 1 - 819858 820493 -chrXIII 821625 822675 LC_gene_7183 1 - 821625 822675 -chrXIII 826982 831437 HC_gene_7184 3 - 826982 831437 -chrXIII 832347 832956 HC_gene_7185 3 - 832347 832956 -chrXIII 833221 835146 HC_gene_7186 31 - 833270 835146 -chrXIII 835249 836851 HC_gene_7187 8 - 835249 836851 -chrXIII 839961 841699 HC_gene_7188 24 - 839965 841699 -chrXIII 842206 845382 HC_gene_7189 11 - 842325 845382 -chrXIII 847035 847882 MC_gene_7190 1 - 847035 847882 -chrXIII 848400 849732 LC_gene_7191 1 - 848400 849732 -chrXIII 849732 851622 HC_gene_7192 239 - 849917 851622 -chrXIII 851856 852256 HC_gene_7193 2 - 851862 852256 -chrXIII 852429 852788 MC_gene_7194 1 - 852429 852788 -chrXIII 854460 854975 MC_gene_7195 1 - 854460 854975 -chrXIII 855277 856832 HC_gene_7196 11 - 855310 856832 -chrXIII 857881 858946 HC_gene_7197 434 - 858084 858946 -chrXIII 858997 861005 HC_gene_7198 147 - 859127 861005 -chrXIII 861295 861704 MC_gene_7199 2 - 861295 861704 -chrXIII 862940 863458 LC_gene_7200 1 - 862940 863458 -chrXIII 864085 865402 HC_gene_7201 23 - 864298 865402 -chrXIII 865432 867358 HC_gene_7202 242 - 865493 867358 -chrXIII 867453 869680 MC_gene_7203 1 - 867478 869680 -chrXIII 869886 872663 HC_gene_7204 41 - 869970 872663 -chrXIII 873195 874393 HC_gene_7205 3 - 873195 874393 -chrXIII 878588 880399 HC_gene_7206 1096 - 878761 880399 -chrXIII 881970 885531 LC_gene_7207 1 - 881970 885531 -chrXIII 885447 886397 HC_gene_7208 1 - 885447 886397 -chrXIII 888635 892366 HC_gene_7209 34 - 888766 892366 -chrXIII 892460 893775 HC_gene_7210 156 - 892672 893775 -chrXIII 893795 895483 HC_gene_7211 1 - 893866 895483 -chrXIII 895600 896714 HC_gene_7212 35 - 895641 896714 -chrXIII 896780 897643 HC_gene_7213 267 - 896800 897643 -chrXIII 898003 898275 MC_gene_7214 1 - 898003 898275 -chrXIII 898310 899016 MC_gene_7215 1 - 898310 899016 -chrXIII 899104 901322 HC_gene_7216 22 - 899192 901322 -chrXIII 902067 902485 MC_gene_7217 1 - 902067 902485 -chrXIII 902521 903560 MC_gene_7218 1 - 902521 903560 -chrXIII 903531 904129 MC_gene_7219 1 - 903531 904129 -chrXIII 904131 904522 HC_gene_7220 3 - 904131 904522 -chrXIII 906609 908896 HC_gene_7221 1 - 906609 908896 -chrXIII 906759 910804 HC_gene_7222 3 - 906759 910804 -chrXIII 910824 912261 HC_gene_7223 400 - 910901 912261 -chrXIII 912510 914672 HC_gene_7224 78 - 912651 914672 -chrXIII 914600 915056 HC_gene_7225 2 - 914600 915056 -chrXIV 9125 9560 MC_gene_7226 1 + 9125 9560 -chrXIV 13085 14314 MC_gene_7227 1 + 13085 14314 -chrXIV 14824 16002 MC_gene_7228 1 + 14824 16002 -chrXIV 16418 17817 MC_gene_7229 1 + 16418 17817 -chrXIV 17229 18026 MC_gene_7230 1 + 17229 18026 -chrXIV 24015 25095 HC_gene_7231 4 + 24015 24882 -chrXIV 25841 27296 HC_gene_7232 18 + 25841 27296 -chrXIV 26489 27644 HC_gene_7233 193 + 26489 27361 -chrXIV 28010 28771 MC_gene_7234 1 + 28010 28771 -chrXIV 28817 29347 LC_gene_7235 1 + 28817 29347 -chrXIV 31049 31571 LC_gene_7236 1 + 31049 31571 -chrXIV 31874 33336 HC_gene_7237 78 + 31874 33334 -chrXIV 33336 34502 LC_gene_7238 1 + 33336 34502 -chrXIV 34668 37590 HC_gene_7239 12 + 34668 37557 -chrXIV 37641 38743 HC_gene_7240 70 + 37641 38743 -chrXIV 40606 42119 HC_gene_7241 19 + 40606 42119 -chrXIV 44428 45377 HC_gene_7242 34 + 44428 45377 -chrXIV 48246 49533 HC_gene_7243 109 + 48246 49415 -chrXIV 52612 54254 HC_gene_7244 9 + 52612 54115 -chrXIV 58124 59156 HC_gene_7245 262 + 58124 58926 -chrXIV 60268 61682 HC_gene_7246 15 + 60268 61682 -chrXIV 65650 66432 HC_gene_7247 406 + 65650 66309 -chrXIV 66432 68614 MC_gene_7248 1 + 66432 68506 -chrXIV 68722 71634 HC_gene_7249 4 + 68722 71553 -chrXIV 76795 78763 HC_gene_7250 17 + 76795 78663 -chrXIV 80597 82685 HC_gene_7251 17 + 80597 82674 -chrXIV 82795 84378 HC_gene_7252 75 + 82795 84129 -chrXIV 85448 86095 MC_gene_7253 1 + 85448 86095 -chrXIV 86191 87549 HC_gene_7254 55 + 86191 87292 -chrXIV 87814 89050 HC_gene_7255 94 + 87814 88869 -chrXIV 89071 89946 HC_gene_7256 26 + 89071 89627 -chrXIV 90160 91673 HC_gene_7257 56 + 90160 91572 -chrXIV 91803 95039 HC_gene_7258 91 + 91803 95030 -chrXIV 95129 96213 HC_gene_7259 54 + 95129 96168 -chrXIV 102797 103146 MC_gene_7260 1 + 102797 103146 -chrXIV 104276 105049 HC_gene_7261 1 + 104276 105042 -chrXIV 105471 107532 LC_gene_7262 1 + 105471 107532 -chrXIV 107661 109346 HC_gene_7263 406 + 107661 109122 -chrXIV 110899 113170 LC_gene_7264 1 + 110899 113170 -chrXIV 113197 116800 HC_gene_7265 5 + 113197 116800 -chrXIV 117237 118984 HC_gene_7266 18 + 117237 118925 -chrXIV 119060 121180 HC_gene_7267 28 + 119060 121180 -chrXIV 122874 126679 HC_gene_7268 2 + 122874 126669 -chrXIV 138186 140719 HC_gene_7269 193 + 138186 140646 -chrXIV 140792 144544 HC_gene_7270 22 + 140792 144295 -chrXIV 145530 145983 LC_gene_7271 1 + 145530 145826 -chrXIV 147187 147629 LC_gene_7272 1 + 147187 147629 -chrXIV 148197 155030 MC_gene_7273 3 + 148197 155030 -chrXIV 153097 155120 MC_gene_7274 1 + 153097 155120 -chrXIV 155089 157064 HC_gene_7275 17 + 155089 157035 -chrXIV 160631 161966 MC_gene_7276 1 + 160631 161966 -chrXIV 164536 167219 HC_gene_7277 17 + 164536 167141 -chrXIV 167259 167877 LC_gene_7278 1 + 167259 167877 -chrXIV 168061 168850 MC_gene_7279 1 + 168061 168754 -chrXIV 169415 170027 HC_gene_7280 5 + 169415 170027 -chrXIV 169984 171471 HC_gene_7281 25 + 169984 171444 -chrXIV 172785 174438 LC_gene_7282 1 + 172785 174438 -chrXIV 174928 175509 MC_gene_7283 1 + 174928 175509 -chrXIV 175394 179873 MC_gene_7284 4 + 175394 179873 -chrXIV 179699 181099 MC_gene_7285 2 + 179699 181099 -chrXIV 182886 185406 HC_gene_7286 31 + 182886 185384 -chrXIV 185457 186628 HC_gene_7287 18 + 185457 186628 -chrXIV 185698 186809 HC_gene_7288 19 + 185698 186776 -chrXIV 187987 191151 HC_gene_7289 43 + 187987 191079 -chrXIV 191228 196150 MC_gene_7290 3 + 191228 196150 -chrXIV 197409 197890 LC_gene_7291 1 + 197409 197890 -chrXIV 198179 198513 MC_gene_7292 1 + 198179 198513 -chrXIV 198450 200574 LC_gene_7293 1 + 198450 200574 -chrXIV 200509 202070 HC_gene_7294 136 + 200509 202066 -chrXIV 202144 205097 HC_gene_7295 21 + 202144 205007 -chrXIV 205139 206746 HC_gene_7296 12 + 205139 206746 -chrXIV 206881 209976 HC_gene_7297 11 + 206881 209947 -chrXIV 210289 211598 HC_gene_7298 16 + 210289 211590 -chrXIV 211756 214746 HC_gene_7299 5 + 211756 214699 -chrXIV 214893 216100 HC_gene_7300 114 + 214893 216004 -chrXIV 216671 217215 LC_gene_7301 1 + 216671 217202 -chrXIV 217754 218470 MC_gene_7302 1 + 217754 218368 -chrXIV 220731 221113 MC_gene_7303 1 + 220731 221113 -chrXIV 221083 222292 LC_gene_7304 1 + 221083 222292 -chrXIV 222367 222727 LC_gene_7305 1 + 222367 222727 -chrXIV 224739 225582 LC_gene_7306 1 + 224739 225582 -chrXIV 227364 228938 HC_gene_7307 9 + 227364 228938 -chrXIV 229055 231070 HC_gene_7308 61 + 229055 231070 -chrXIV 234015 234280 MC_gene_7309 1 + 234015 234260 -chrXIV 234320 235946 HC_gene_7310 628 + 234320 235811 -chrXIV 237993 241444 HC_gene_7311 128 + 237993 241432 -chrXIV 241647 244345 HC_gene_7312 17 + 241647 244310 -chrXIV 244379 246478 HC_gene_7313 190 + 244379 246478 -chrXIV 247417 250087 HC_gene_7314 49 + 247417 249969 -chrXIV 252034 254346 HC_gene_7315 1953 + 252034 254042 -chrXIV 254397 255172 HC_gene_7316 1192 + 254397 255115 -chrXIV 255210 257759 HC_gene_7317 64 + 255210 257759 -chrXIV 259554 260567 HC_gene_7318 10 + 259554 260567 -chrXIV 263683 264834 MC_gene_7319 1 + 263683 264834 -chrXIV 267125 267503 LC_gene_7320 1 + 267125 267503 -chrXIV 270161 271218 HC_gene_7321 11 + 270161 271201 -chrXIV 272017 272586 HC_gene_7322 6 + 272017 272586 -chrXIV 274346 276333 HC_gene_7323 21 + 274346 276333 -chrXIV 276385 280054 HC_gene_7324 113 + 276385 279989 -chrXIV 280371 281716 HC_gene_7325 41 + 280371 281608 -chrXIV 282106 283919 HC_gene_7326 1335 + 282106 283788 -chrXIV 284059 284279 HC_gene_7327 3 + 284059 284279 -chrXIV 284064 286185 HC_gene_7328 112 + 284064 286122 -chrXIV 286249 287757 HC_gene_7329 24 + 286249 287678 -chrXIV 287777 291984 HC_gene_7330 10 + 287777 291984 -chrXIV 289303 292160 HC_gene_7331 39 + 289303 292156 -chrXIV 292509 293143 MC_gene_7332 1 + 292509 293143 -chrXIV 298264 299674 HC_gene_7333 53 + 298264 299674 -chrXIV 301116 301949 LC_gene_7334 1 + 301116 301949 -chrXIV 302661 303849 HC_gene_7335 2267 + 302661 303631 -chrXIV 304055 304526 LC_gene_7336 1 + 304055 304526 -chrXIV 307555 307979 LC_gene_7337 1 + 307555 307979 -chrXIV 309382 309791 LC_gene_7338 1 + 309382 309758 -chrXIV 315443 316201 HC_gene_7339 1 + 315443 316201 -chrXIV 317995 319594 HC_gene_7340 14 + 317995 319594 -chrXIV 321907 322262 MC_gene_7341 1 + 321907 322262 -chrXIV 323757 325274 HC_gene_7342 13 + 323757 325274 -chrXIV 326235 326774 MC_gene_7343 1 + 326235 326774 -chrXIV 330310 331153 HC_gene_7344 32 + 330310 330984 -chrXIV 331303 332357 HC_gene_7345 2494 + 331303 332250 -chrXIV 332424 335320 HC_gene_7346 7 + 332424 335320 -chrXIV 335298 339185 HC_gene_7347 1154 + 335298 339185 -chrXIV 339574 341181 HC_gene_7348 221 + 339574 341163 -chrXIV 342399 343512 HC_gene_7349 77 + 342399 343512 -chrXIV 343755 346377 LC_gene_7350 1 + 343755 346377 -chrXIV 346299 347694 HC_gene_7351 29 + 346299 347630 -chrXIV 348003 349407 LC_gene_7352 1 + 348003 349340 -chrXIV 350550 351623 HC_gene_7353 337 + 350550 351461 -chrXIV 351643 352344 HC_gene_7354 11 + 351643 352344 -chrXIV 352371 353229 HC_gene_7355 3 + 352371 352705 -chrXIV 354312 355250 MC_gene_7356 2 + 354312 355250 -chrXIV 355863 356510 HC_gene_7357 28 + 355863 356484 -chrXIV 356530 357398 HC_gene_7358 1 + 356530 357398 -chrXIV 357171 359032 HC_gene_7359 20 + 357171 359032 -chrXIV 359569 360976 HC_gene_7360 208 + 359569 360695 -chrXIV 361225 362079 MC_gene_7361 1 + 361225 362079 -chrXIV 366012 366678 HC_gene_7362 115 + 366012 366631 -chrXIV 366708 368664 HC_gene_7363 217 + 366708 368484 -chrXIV 370357 371774 HC_gene_7364 127 + 370357 371774 -chrXIV 372464 374189 HC_gene_7365 3 + 372464 374189 -chrXIV 373987 374331 HC_gene_7366 3 + 373987 374329 -chrXIV 375228 378663 HC_gene_7367 27 + 375228 378580 -chrXIV 378718 379727 HC_gene_7368 472 + 378718 379556 -chrXIV 380577 380958 LC_gene_7369 1 + 380577 380958 -chrXIV 381110 382534 HC_gene_7370 68 + 381110 382534 -chrXIV 383909 387100 HC_gene_7371 7 + 383909 387077 -chrXIV 387170 389778 HC_gene_7372 7 + 387170 389734 -chrXIV 392851 395121 HC_gene_7373 72 + 392851 395121 -chrXIV 394650 398001 HC_gene_7374 47 + 394650 397967 -chrXIV 401031 402972 HC_gene_7375 24 + 401031 402972 -chrXIV 407484 408105 HC_gene_7376 3 + 407484 408105 -chrXIV 408279 410212 HC_gene_7377 30 + 408279 410074 -chrXIV 412724 413565 HC_gene_7378 322 + 412724 413371 -chrXIV 413596 416936 HC_gene_7379 770 + 413596 416918 -chrXIV 417811 418308 MC_gene_7380 1 + 417811 418245 -chrXIV 418815 419016 HC_gene_7381 3 + 418815 419016 -chrXIV 420093 421149 HC_gene_7382 42 + 420093 421011 -chrXIV 424843 427115 MC_gene_7383 1 + 424843 427115 -chrXIV 427583 429871 HC_gene_7384 20 + 427583 429835 -chrXIV 430006 434602 HC_gene_7385 3 + 430006 434602 -chrXIV 434119 434711 HC_gene_7386 18 + 434119 434673 -chrXIV 434797 437464 HC_gene_7387 12 + 434797 437427 -chrXIV 437565 438530 HC_gene_7388 155 + 437565 438459 -chrXIV 438584 439674 HC_gene_7389 3 + 438584 439575 -chrXIV 439674 440211 LC_gene_7390 1 + 439674 440211 -chrXIV 440777 441862 HC_gene_7391 15 + 440777 441368 -chrXIV 443023 443293 MC_gene_7392 1 + 443023 443293 -chrXIV 444836 445971 HC_gene_7393 10 + 444836 445971 -chrXIV 447336 449596 HC_gene_7394 40 + 447336 449586 -chrXIV 449809 450803 MC_gene_7395 1 + 449809 450803 -chrXIV 450820 452295 MC_gene_7396 3 + 450820 452295 -chrXIV 452259 456366 HC_gene_7397 49 + 452259 456358 -chrXIV 456419 457526 HC_gene_7398 69 + 456419 457526 -chrXIV 457630 464367 HC_gene_7399 116 + 457630 462351 -chrXIV 464387 465161 HC_gene_7400 1 + 464387 464651 -chrXIV 465181 466188 HC_gene_7401 33 + 465181 466141 -chrXIV 466248 466930 HC_gene_7402 16 + 466248 466899 -chrXIV 467469 468443 MC_gene_7403 1 + 467469 467878 -chrXIV 468464 470173 HC_gene_7404 134 + 468464 470145 -chrXIV 471365 473117 HC_gene_7405 25 + 471365 473115 -chrXIV 473357 476215 HC_gene_7406 9 + 473357 476163 -chrXIV 477037 478206 LC_gene_7407 1 + 477037 478206 -chrXIV 478530 479133 LC_gene_7408 1 + 478530 479120 -chrXIV 479498 481279 HC_gene_7409 61 + 479498 481279 -chrXIV 481106 483085 HC_gene_7410 28 + 481106 483021 -chrXIV 483296 485450 HC_gene_7411 12 + 483296 485409 -chrXIV 485528 486747 HC_gene_7412 83 + 485528 486747 -chrXIV 486715 487901 LC_gene_7413 1 + 486715 487901 -chrXIV 488380 490246 HC_gene_7414 23 + 488380 490215 -chrXIV 490294 491348 HC_gene_7415 32 + 490294 491324 -chrXIV 491490 493227 HC_gene_7416 201 + 491490 493128 -chrXIV 493312 493760 HC_gene_7417 530 + 493312 493686 -chrXIV 493760 494207 LC_gene_7418 1 + 493760 494207 -chrXIV 495410 495660 MC_gene_7419 1 + 495410 495660 -chrXIV 499646 500891 HC_gene_7420 933 + 499646 500486 -chrXIV 500930 501463 HC_gene_7421 2 + 500930 501194 -chrXIV 501483 503608 HC_gene_7422 276 + 501483 503608 -chrXIV 503629 505749 HC_gene_7423 70 + 503629 505667 -chrXIV 507642 508883 HC_gene_7424 32 + 507642 508747 -chrXIV 510499 512736 HC_gene_7425 125 + 510499 512508 -chrXIV 515179 516117 HC_gene_7426 11 + 515179 516093 -chrXIV 517152 518232 HC_gene_7427 172 + 517152 518108 -chrXIV 519704 525048 MC_gene_7428 4 + 519704 525048 -chrXIV 523354 525602 MC_gene_7429 2 + 523354 525601 -chrXIV 526028 529845 HC_gene_7430 5 + 526028 529845 -chrXIV 529830 531664 HC_gene_7431 27 + 529830 531664 -chrXIV 531689 532577 HC_gene_7432 325 + 531689 532444 -chrXIV 532651 534125 HC_gene_7433 36 + 532651 534093 -chrXIV 535198 535538 MC_gene_7434 1 + 535198 535486 -chrXIV 538153 540114 HC_gene_7435 32 + 538153 539920 -chrXIV 542112 542977 HC_gene_7436 90 + 542112 542977 -chrXIV 543008 545185 HC_gene_7437 43 + 543008 545185 -chrXIV 545203 546175 HC_gene_7438 237 + 545203 546046 -chrXIV 546256 546778 HC_gene_7439 5 + 546256 546736 -chrXIV 547944 549425 HC_gene_7440 17 + 547944 549394 -chrXIV 552234 553267 MC_gene_7441 2 + 552234 553267 -chrXIV 553333 554908 HC_gene_7442 25 + 553333 554904 -chrXIV 555005 556960 HC_gene_7443 75 + 555005 556886 -chrXIV 557018 558095 HC_gene_7444 71 + 557018 557886 -chrXIV 559038 559419 HC_gene_7445 2 + 559038 559336 -chrXIV 559664 560678 HC_gene_7446 220 + 559664 560650 -chrXIV 561401 562222 MC_gene_7447 1 + 561401 562222 -chrXIV 566747 567854 LC_gene_7448 1 + 566747 567854 -chrXIV 568403 569771 MC_gene_7449 1 + 568403 569771 -chrXIV 571846 572506 LC_gene_7450 1 + 571846 572506 -chrXIV 572874 573963 MC_gene_7451 1 + 572874 573963 -chrXIV 574377 576666 HC_gene_7452 50 + 574377 576666 -chrXIV 576695 577682 HC_gene_7453 2694 + 576695 577216 -chrXIV 579419 581776 HC_gene_7454 14 + 579419 581731 -chrXIV 581885 583803 HC_gene_7455 25 + 581885 583803 -chrXIV 585585 586694 HC_gene_7456 49 + 585585 586333 -chrXIV 587684 588258 HC_gene_7457 3 + 587684 588258 -chrXIV 587895 588561 HC_gene_7458 26 + 587895 588327 -chrXIV 593157 595572 HC_gene_7459 2 + 593157 595572 -chrXIV 593347 596877 HC_gene_7460 1 + 593347 596861 -chrXIV 597949 599915 HC_gene_7461 1 + 597949 599915 -chrXIV 600873 601957 MC_gene_7462 1 + 600873 601957 -chrXIV 602856 604945 HC_gene_7463 537 + 602856 604763 -chrXIV 604965 605851 HC_gene_7464 354 + 604965 605788 -chrXIV 606551 609526 HC_gene_7465 1 + 606551 609526 -chrXIV 610968 611957 HC_gene_7466 21 + 610968 611957 -chrXIV 613594 614721 HC_gene_7467 435 + 613594 614512 -chrXIV 614785 616945 HC_gene_7468 14 + 614785 616943 -chrXIV 618521 619635 LC_gene_7469 1 + 618521 619635 -chrXIV 620055 621465 HC_gene_7470 54 + 620055 621273 -chrXIV 622877 624871 HC_gene_7471 132 + 622877 624764 -chrXIV 624871 625383 MC_gene_7472 1 + 624871 625357 -chrXIV 625464 626182 MC_gene_7473 1 + 625464 626182 -chrXIV 627391 628755 HC_gene_7474 53 + 627391 628689 -chrXIV 629177 629631 HC_gene_7475 20 + 629177 629631 -chrXIV 631331 631654 MC_gene_7476 1 + 631331 631654 -chrXIV 631824 632263 MC_gene_7477 1 + 631824 632263 -chrXIV 632862 634149 HC_gene_7478 18 + 632862 634081 -chrXIV 635468 636799 HC_gene_7479 26 + 635468 636799 -chrXIV 636963 639009 HC_gene_7480 32 + 636963 638983 -chrXIV 640363 643646 HC_gene_7481 59 + 640363 643627 -chrXIV 643700 644528 HC_gene_7482 63 + 643700 644273 -chrXIV 644653 645551 LC_gene_7483 1 + 644653 645551 -chrXIV 647338 649018 HC_gene_7484 22 + 647338 649016 -chrXIV 652160 652443 HC_gene_7485 1 + 652160 652443 -chrXIV 652412 653273 HC_gene_7486 60 + 652412 653273 -chrXIV 653378 654675 HC_gene_7487 46 + 653378 654648 -chrXIV 662311 663967 HC_gene_7488 328 + 662311 663855 -chrXIV 664247 665264 HC_gene_7489 216 + 664247 665074 -chrXIV 665295 667460 HC_gene_7490 41 + 665295 667412 -chrXIV 668348 669983 HC_gene_7491 248 + 668348 669799 -chrXIV 670376 672303 HC_gene_7492 12 + 670376 672218 -chrXIV 672391 673285 HC_gene_7493 108 + 672391 673091 -chrXIV 674907 676139 HC_gene_7494 45 + 674907 676139 -chrXIV 676092 677371 HC_gene_7495 79 + 676092 677195 -chrXIV 677588 678610 LC_gene_7496 1 + 677588 678610 -chrXIV 678739 680738 HC_gene_7497 50 + 678739 680693 -chrXIV 685903 687487 HC_gene_7498 41 + 685903 687252 -chrXIV 687627 690078 HC_gene_7499 7 + 687627 690071 -chrXIV 690216 691597 HC_gene_7500 42 + 690216 691560 -chrXIV 692266 692960 HC_gene_7501 293 + 692266 692960 -chrXIV 695589 697708 HC_gene_7502 10 + 695589 697638 -chrXIV 699683 700627 HC_gene_7503 9 + 699683 700591 -chrXIV 701880 703514 HC_gene_7504 153 + 701880 703433 -chrXIV 703580 705975 HC_gene_7505 85 + 703580 705943 -chrXIV 706112 707653 HC_gene_7506 8 + 706112 707653 -chrXIV 707774 708433 HC_gene_7507 201 + 707774 708339 -chrXIV 709214 711553 HC_gene_7508 10 + 709214 711415 -chrXIV 711601 713160 HC_gene_7509 19 + 711601 713000 -chrXIV 713411 713847 LC_gene_7510 1 + 713411 713847 -chrXIV 716114 716680 HC_gene_7511 159 + 716114 716540 -chrXIV 719514 720747 LC_gene_7512 1 + 719514 720747 -chrXIV 723473 724020 LC_gene_7513 1 + 723473 723881 -chrXIV 724497 726012 HC_gene_7514 9 + 724497 726012 -chrXIV 726468 727563 MC_gene_7515 1 + 726468 727526 -chrXIV 727746 728328 HC_gene_7516 1 + 727746 728327 -chrXIV 728416 729301 MC_gene_7517 1 + 728416 729301 -chrXIV 731318 733349 HC_gene_7518 3 + 731318 733349 -chrXIV 734413 735853 HC_gene_7519 3 + 734413 735853 -chrXIV 735934 736677 LC_gene_7520 1 + 735934 736443 -chrXIV 736748 738779 HC_gene_7521 12 + 736748 738779 -chrXIV 739575 740070 MC_gene_7522 1 + 739575 740032 -chrXIV 740090 742227 HC_gene_7523 1 + 740090 742175 -chrXIV 742348 742695 HC_gene_7524 10 + 742348 742652 -chrXIV 743809 746412 HC_gene_7525 1 + 743809 746385 -chrXIV 746798 749733 MC_gene_7526 2 + 746798 749733 -chrXIV 748953 750359 MC_gene_7527 1 + 748953 750359 -chrXIV 755294 755781 HC_gene_7528 1 + 755294 755736 -chrXIV 758362 759323 MC_gene_7529 1 + 758362 759323 -chrXIV 759975 760817 MC_gene_7530 1 + 759975 760817 -chrXIV 763388 763912 HC_gene_7531 2 + 763388 763912 -chrXIV 764437 764993 MC_gene_7532 1 + 764437 764977 -chrXIV 769197 770150 MC_gene_7533 1 + 769197 770150 -chrXIV 769509 770205 MC_gene_7534 1 + 769509 770205 -chrXIV 769732 770257 MC_gene_7535 1 + 769732 770257 -chrXIV 770260 771611 MC_gene_7536 1 + 770260 771611 -chrXIV 771762 774430 LC_gene_7537 1 + 771762 774430 -chrXIV 774674 775178 LC_gene_7538 1 + 774674 775178 -chrXIV 775880 777319 LC_gene_7539 1 + 775880 777319 -chrXIV 779128 780446 HC_gene_7540 7 + 779128 780204 -chrXIV 781706 782419 MC_gene_7541 1 + 781706 782419 -chrXIV 304 3509 LC_gene_7542 1 - 304 3509 -chrXIV 7401 8225 LC_gene_7543 1 - 7401 8225 -chrXIV 9411 9989 LC_gene_7544 1 - 9411 9989 -chrXIV 10366 12083 MC_gene_7545 1 - 10366 12083 -chrXIV 12096 12969 MC_gene_7546 1 - 12096 12969 -chrXIV 16014 16242 HC_gene_7547 1 - 16054 16242 -chrXIV 17598 19347 HC_gene_7548 99 - 17738 19347 -chrXIV 19423 23296 HC_gene_7549 6 - 19477 23296 -chrXIV 27098 28380 HC_gene_7550 23 - 27161 28380 -chrXIV 28685 31409 HC_gene_7551 5 - 28685 31409 -chrXIV 32717 34254 HC_gene_7552 209 - 32717 34254 -chrXIV 35985 37442 LC_gene_7553 1 - 35985 37442 -chrXIV 41887 43132 HC_gene_7554 17 - 42013 43132 -chrXIV 43163 44279 HC_gene_7555 62 - 43217 44279 -chrXIV 44969 48054 HC_gene_7556 15 - 45218 48054 -chrXIV 48263 48938 LC_gene_7557 1 - 48263 48938 -chrXIV 49302 51694 HC_gene_7558 3 - 49302 51694 -chrXIV 51707 52464 HC_gene_7559 58 - 51707 52464 -chrXIV 53831 55939 HC_gene_7560 280 - 53981 55939 -chrXIV 56018 57740 HC_gene_7561 196 - 56104 57740 -chrXIV 58536 59823 HC_gene_7562 94 - 58808 59823 -chrXIV 60181 61040 LC_gene_7563 1 - 60186 61040 -chrXIV 61383 63103 HC_gene_7564 2701 - 61774 63103 -chrXIV 63168 64633 HC_gene_7565 564 - 63403 64633 -chrXIV 64706 66247 MC_gene_7566 1 - 64850 66247 -chrXIV 68012 68366 LC_gene_7567 1 - 68012 68366 -chrXIV 68411 68903 MC_gene_7568 1 - 68411 68903 -chrXIV 71440 76615 HC_gene_7569 5 - 71440 76615 -chrXIV 77935 78180 MC_gene_7570 1 - 77935 78180 -chrXIV 78383 80435 HC_gene_7571 37 - 78493 80435 -chrXIV 82018 82606 LC_gene_7572 1 - 82018 82606 -chrXIV 83912 86030 HC_gene_7573 10 - 84014 86030 -chrXIV 87737 88565 LC_gene_7574 1 - 87737 88565 -chrXIV 88565 89591 MC_gene_7575 1 - 88767 89591 -chrXIV 90659 91536 MC_gene_7576 1 - 90659 91536 -chrXIV 94936 96111 HC_gene_7577 1 - 94936 96111 -chrXIV 102893 104056 HC_gene_7578 83 - 102896 104056 -chrXIV 104893 107088 HC_gene_7579 48 - 104954 107088 -chrXIV 107682 108087 MC_gene_7580 1 - 107682 108087 -chrXIV 108750 110473 HC_gene_7581 39 - 108772 110473 -chrXIV 110735 112716 HC_gene_7582 3 - 110759 112716 -chrXIV 114317 116542 MC_gene_7583 1 - 114317 116542 -chrXIV 116979 118639 HC_gene_7584 2 - 117059 118639 -chrXIV 118662 119122 HC_gene_7585 2 - 118806 119122 -chrXIV 121010 122216 HC_gene_7586 53 - 121010 122216 -chrXIV 126620 129181 HC_gene_7587 22 - 126690 129181 -chrXIV 129246 132955 HC_gene_7588 69 - 129343 132955 -chrXIV 132960 133267 MC_gene_7589 1 - 132960 133267 -chrXIV 133787 135493 MC_gene_7590 2 - 133914 135493 -chrXIV 135845 137850 HC_gene_7591 1 - 135845 137850 -chrXIV 137759 140506 LC_gene_7592 1 - 137759 140506 -chrXIV 144024 145303 HC_gene_7593 41 - 144036 145303 -chrXIV 145268 146624 HC_gene_7594 61 - 145268 146624 -chrXIV 146675 147982 HC_gene_7595 112 - 146695 147982 -chrXIV 153484 154056 LC_gene_7596 1 - 153484 154056 -chrXIV 156312 157360 HC_gene_7597 75 - 156339 157360 -chrXIV 157427 160382 HC_gene_7598 453 - 157528 160382 -chrXIV 160540 164377 HC_gene_7599 3 - 160586 164377 -chrXIV 165685 167001 HC_gene_7600 2 - 165685 167001 -chrXIV 167021 169266 HC_gene_7601 1209 - 167178 169266 -chrXIV 169871 171090 LC_gene_7602 1 - 169871 171090 -chrXIV 171242 172285 HC_gene_7603 92 - 171287 172285 -chrXIV 172372 174617 HC_gene_7604 74 - 172424 174617 -chrXIV 178845 181045 HC_gene_7605 9 - 178845 181045 -chrXIV 181065 182644 HC_gene_7606 157 - 181153 182644 -chrXIV 184004 185080 LC_gene_7607 1 - 184004 185080 -chrXIV 185620 186916 HC_gene_7608 24 - 185620 186916 -chrXIV 187000 187530 HC_gene_7609 1297 - 187024 187530 -chrXIV 191986 193613 LC_gene_7610 1 - 191986 193613 -chrXIV 194409 194856 MC_gene_7611 1 - 194409 194856 -chrXIV 196161 198057 HC_gene_7612 299 - 196226 198057 -chrXIV 198257 200025 HC_gene_7613 54 - 198382 200025 -chrXIV 201158 201971 HC_gene_7614 12 - 201411 201971 -chrXIV 204816 206692 HC_gene_7615 9 - 204897 206692 -chrXIV 215562 218751 HC_gene_7616 554 - 215909 218751 -chrXIV 218701 220410 HC_gene_7617 213 - 218701 220410 -chrXIV 220443 222488 HC_gene_7618 44 - 220584 222488 -chrXIV 222580 224502 HC_gene_7619 15 - 222584 224502 -chrXIV 224675 227185 HC_gene_7620 14 - 224675 227185 -chrXIV 228259 228776 LC_gene_7621 1 - 228259 228776 -chrXIV 228789 229214 MC_gene_7622 1 - 228789 229214 -chrXIV 229214 230672 HC_gene_7623 2 - 229762 230672 -chrXIV 230688 234102 HC_gene_7624 27 - 230688 234102 -chrXIV 235723 237809 HC_gene_7625 47 - 235838 237809 -chrXIV 239323 239854 MC_gene_7626 1 - 239323 239854 -chrXIV 240368 240997 MC_gene_7627 1 - 240368 240997 -chrXIV 241635 243247 LC_gene_7628 1 - 241635 243247 -chrXIV 243453 244253 MC_gene_7629 1 - 243453 244253 -chrXIV 246107 247193 HC_gene_7630 97 - 246363 247193 -chrXIV 249583 251734 HC_gene_7631 60 - 249824 251734 -chrXIV 253896 255025 HC_gene_7632 2 - 253896 255025 -chrXIV 256543 258162 HC_gene_7633 63 - 256543 258162 -chrXIV 258334 260222 MC_gene_7634 1 - 258334 260222 -chrXIV 260339 263469 HC_gene_7635 20 - 260430 263469 -chrXIV 263619 264553 HC_gene_7636 90 - 263624 264553 -chrXIV 264651 266650 HC_gene_7637 52 - 264757 266650 -chrXIV 266777 269932 HC_gene_7638 46 - 266911 269932 -chrXIV 271426 273689 HC_gene_7639 19 - 271426 273689 -chrXIV 275211 275817 HC_gene_7640 5 - 275211 275817 -chrXIV 279858 280249 MC_gene_7641 2 - 279858 280249 -chrXIV 280902 281248 LC_gene_7642 1 - 280902 281248 -chrXIV 281267 281533 MC_gene_7643 1 - 281267 281533 -chrXIV 283728 284345 LC_gene_7644 1 - 283728 284345 -chrXIV 285283 285983 LC_gene_7645 1 - 285283 285983 -chrXIV 287555 289147 LC_gene_7646 1 - 287555 289147 -chrXIV 291864 292767 HC_gene_7647 77 - 292064 292767 -chrXIV 292979 295714 HC_gene_7648 12 - 293031 295714 -chrXIV 295649 297641 HC_gene_7649 44 - 295649 297641 -chrXIV 298811 299330 LC_gene_7650 1 - 298811 299330 -chrXIV 299355 300842 HC_gene_7651 123 - 299355 300842 -chrXIV 300843 301672 HC_gene_7652 1 - 300843 301672 -chrXIV 303277 304665 HC_gene_7653 60 - 303383 304665 -chrXIV 304746 307160 HC_gene_7654 13 - 304817 307160 -chrXIV 307186 308648 HC_gene_7655 155 - 307186 308648 -chrXIV 308779 310098 HC_gene_7656 178 - 308858 310098 -chrXIV 315954 317778 HC_gene_7657 46 - 316056 317778 -chrXIV 317783 318851 HC_gene_7658 69 - 317783 318851 -chrXIV 319103 321716 HC_gene_7659 28 - 319205 321716 -chrXIV 321977 323576 HC_gene_7660 71 - 322126 323576 -chrXIV 324903 326498 HC_gene_7661 25 - 324913 326498 -chrXIV 326518 330139 HC_gene_7662 10 - 326603 330139 -chrXIV 330233 330828 HC_gene_7663 7 - 330249 330828 -chrXIV 330967 332162 MC_gene_7664 1 - 330967 332162 -chrXIV 334307 339369 HC_gene_7665 67 - 335165 339369 -chrXIV 340812 342140 HC_gene_7666 143 - 340855 342140 -chrXIV 343050 345510 HC_gene_7667 193 - 343336 345510 -chrXIV 345444 346096 HC_gene_7668 269 - 345444 346096 -chrXIV 347295 348575 HC_gene_7669 87 - 347542 348575 -chrXIV 348962 350683 HC_gene_7670 440 - 348998 350683 -chrXIV 349624 350714 HC_gene_7671 47 - 349624 350714 -chrXIV 350823 351448 HC_gene_7672 4 - 350823 351448 -chrXIV 352743 355237 HC_gene_7673 37 - 352743 355237 -chrXIV 356252 356881 HC_gene_7674 34 - 356353 356881 -chrXIV 358768 360638 MC_gene_7675 1 - 358927 360638 -chrXIV 360597 365806 HC_gene_7676 18 - 360597 365806 -chrXIV 368252 370150 HC_gene_7677 57 - 368374 370150 -chrXIV 371400 372244 HC_gene_7678 1886 - 371400 372244 -chrXIV 372371 373627 HC_gene_7679 157 - 372371 373627 -chrXIV 373947 374713 HC_gene_7680 52 - 373978 374713 -chrXIV 375730 378403 LC_gene_7681 1 - 375730 378403 -chrXIV 379253 380874 HC_gene_7682 118 - 379253 380874 -chrXIV 381219 382502 MC_gene_7683 1 - 381224 382502 -chrXIV 382712 383784 MC_gene_7684 1 - 382712 383784 -chrXIV 389962 392380 HC_gene_7685 42 - 389969 392380 -chrXIV 392957 394331 LC_gene_7686 1 - 392957 394331 -chrXIV 397588 398340 HC_gene_7687 90 - 397668 398340 -chrXIV 398381 400586 HC_gene_7688 243 - 398445 400586 -chrXIV 402271 405606 HC_gene_7689 57 - 402521 405606 -chrXIV 406139 407813 MC_gene_7690 1 - 406139 407813 -chrXIV 409956 412089 HC_gene_7691 19 - 409956 412089 -chrXIV 412665 413235 MC_gene_7692 1 - 412665 413235 -chrXIV 416452 417549 HC_gene_7693 293 - 416658 417549 -chrXIV 417593 418527 HC_gene_7694 451 - 417703 418527 -chrXIV 418686 419861 HC_gene_7695 86 - 418866 419861 -chrXIV 420768 424546 HC_gene_7696 4 - 420821 424546 -chrXIV 424618 427226 HC_gene_7697 386 - 424776 427226 -chrXIV 434319 435093 LC_gene_7698 1 - 434466 435093 -chrXIV 438003 439316 HC_gene_7699 97 - 438216 439316 -chrXIV 439373 441011 HC_gene_7700 502 - 439480 441011 -chrXIV 441031 442497 HC_gene_7701 43 - 441168 442497 -chrXIV 443112 444356 HC_gene_7702 1324 - 443191 444356 -chrXIV 444630 447051 HC_gene_7703 5 - 444630 447051 -chrXIV 449409 450640 MC_gene_7704 1 - 449409 450640 -chrXIV 450937 452013 LC_gene_7705 1 - 450937 452013 -chrXIV 457157 457685 MC_gene_7706 1 - 457363 457685 -chrXIV 458950 459440 MC_gene_7707 1 - 459148 459440 -chrXIV 462215 463864 MC_gene_7708 1 - 462215 463864 -chrXIV 462872 464986 MC_gene_7709 1 - 462872 464986 -chrXIV 464707 465310 MC_gene_7710 1 - 464707 465310 -chrXIV 466029 466604 HC_gene_7711 7 - 466030 466604 -chrXIV 469812 471157 HC_gene_7712 168 - 469812 471157 -chrXIV 472936 473135 MC_gene_7713 1 - 472936 473135 -chrXIV 472997 473553 MC_gene_7714 1 - 472997 473553 -chrXIV 475734 476659 HC_gene_7715 166 - 475999 476659 -chrXIV 476780 478185 HC_gene_7716 72 - 476831 478185 -chrXIV 478255 479358 HC_gene_7717 1053 - 478386 479358 -chrXIV 479418 480874 MC_gene_7718 1 - 479418 480874 -chrXIV 481049 481904 LC_gene_7719 1 - 481049 481904 -chrXIV 482865 483112 HC_gene_7720 7 - 482865 483112 -chrXIV 483802 485231 LC_gene_7721 1 - 483802 485231 -chrXIV 486389 488171 HC_gene_7722 42 - 486400 488171 -chrXIV 488719 490110 LC_gene_7723 1 - 488719 490110 -chrXIV 490172 491239 HC_gene_7724 4 - 490172 491239 -chrXIV 492034 493014 LC_gene_7725 1 - 492034 493014 -chrXIV 493375 495017 HC_gene_7726 1358 - 493423 495017 -chrXIV 495529 498469 HC_gene_7727 13 - 495529 498469 -chrXIV 500303 500718 MC_gene_7728 1 - 500303 500718 -chrXIV 500853 502838 HC_gene_7729 2 - 500853 502838 -chrXIV 503579 504026 LC_gene_7730 1 - 503579 504026 -chrXIV 505460 507290 HC_gene_7731 847 - 505498 507290 -chrXIV 508460 510242 HC_gene_7732 41 - 508472 510242 -chrXIV 512535 514952 HC_gene_7733 62 - 512557 514952 -chrXIV 515102 516185 HC_gene_7734 1 - 515170 516185 -chrXIV 515345 516781 HC_gene_7735 69 - 515345 516781 -chrXIV 517530 519146 HC_gene_7736 1985 - 517931 519146 -chrXIV 519281 520160 MC_gene_7737 1 - 519281 520160 -chrXIV 524712 525320 LC_gene_7738 1 - 524712 525320 -chrXIV 525403 525824 HC_gene_7739 2 - 525527 525824 -chrXIV 527429 529539 MC_gene_7740 1 - 527429 529539 -chrXIV 529747 531460 LC_gene_7741 1 - 529747 531460 -chrXIV 531612 532519 MC_gene_7742 1 - 531612 532519 -chrXIV 533782 535002 HC_gene_7743 42 - 534008 535002 -chrXIV 535063 537929 HC_gene_7744 9 - 535092 537929 -chrXIV 539811 542059 HC_gene_7745 18 - 539821 542059 -chrXIV 542079 543135 HC_gene_7746 10 - 542118 543135 -chrXIV 544973 546027 HC_gene_7747 3 - 544973 546027 -chrXIV 546036 546389 MC_gene_7748 1 - 546036 546389 -chrXIV 546817 547659 MC_gene_7749 2 - 546817 547659 -chrXIV 549280 552029 HC_gene_7750 8 - 549280 552029 -chrXIV 552123 552597 LC_gene_7751 1 - 552133 552597 -chrXIV 554381 554818 LC_gene_7752 1 - 554381 554818 -chrXIV 554930 555494 MC_gene_7753 1 - 554930 555494 -chrXIV 557708 559205 HC_gene_7754 505 - 557797 559205 -chrXIV 561284 563282 MC_gene_7755 1 - 561284 563282 -chrXIV 562112 565603 MC_gene_7756 1 - 562112 565603 -chrXIV 562122 567729 MC_gene_7757 1 - 562122 567729 -chrXIV 568214 569751 HC_gene_7758 45 - 568312 569751 -chrXIV 570411 574127 MC_gene_7759 2 - 570411 574127 -chrXIV 574962 576067 HC_gene_7760 2560 - 575380 576067 -chrXIV 577093 578822 HC_gene_7761 20 - 577093 578822 -chrXIV 579017 579439 HC_gene_7762 4 - 579209 579439 -chrXIV 582301 583182 LC_gene_7763 1 - 582301 583182 -chrXIV 583306 585395 HC_gene_7764 15 - 583347 585395 -chrXIV 586051 586867 HC_gene_7765 255 - 586140 586867 -chrXIV 586955 587869 HC_gene_7766 103 - 587002 587869 -chrXIV 587922 591210 HC_gene_7767 10 - 587969 591210 -chrXIV 591243 592925 HC_gene_7768 54 - 591300 592925 -chrXIV 595348 598155 MC_gene_7769 3 - 595348 598155 -chrXIV 599740 601038 LC_gene_7770 1 - 599740 601038 -chrXIV 602466 603035 LC_gene_7771 1 - 602466 603035 -chrXIV 604188 604671 MC_gene_7772 1 - 604188 604671 -chrXIV 604676 605005 HC_gene_7773 3 - 604676 605005 -chrXIV 605232 605730 MC_gene_7774 1 - 605232 605730 -chrXIV 605531 605885 MC_gene_7775 1 - 605531 605885 -chrXIV 605670 606343 MC_gene_7776 1 - 605670 606343 -chrXIV 607321 608015 LC_gene_7777 1 - 607321 608015 -chrXIV 610412 611174 HC_gene_7778 1 - 610412 611174 -chrXIV 611721 613445 HC_gene_7779 24 - 611742 613445 -chrXIV 613970 615487 MC_gene_7780 1 - 614386 615487 -chrXIV 615146 615668 MC_gene_7781 1 - 615146 615668 -chrXIV 615302 615992 MC_gene_7782 1 - 615302 615992 -chrXIV 616169 618267 HC_gene_7783 12 - 616169 618267 -chrXIV 618320 619280 HC_gene_7784 324 - 618451 619280 -chrXIV 619300 619693 HC_gene_7785 1 - 619547 619693 -chrXIV 620934 622473 HC_gene_7786 140 - 621144 622473 -chrXIV 621734 622660 HC_gene_7787 13 - 621734 622660 -chrXIV 624208 625862 HC_gene_7788 32 - 624208 625862 -chrXIV 625910 627178 HC_gene_7789 426 - 625910 627178 -chrXIV 629375 631161 HC_gene_7790 481 - 629427 631161 -chrXIV 631039 631191 HC_gene_7791 3 - 631039 631191 -chrXIV 632858 633897 HC_gene_7792 3 - 632858 633897 -chrXIV 633882 635329 HC_gene_7793 28 - 633882 635329 -chrXIV 635414 635717 HC_gene_7794 11 - 635414 635717 -chrXIV 635820 636741 HC_gene_7795 10 - 635825 636741 -chrXIV 638875 640173 HC_gene_7796 36 - 638875 640173 -chrXIV 640071 641861 LC_gene_7797 1 - 640071 641861 -chrXIV 642554 643524 MC_gene_7798 1 - 642554 643524 -chrXIV 644077 646969 HC_gene_7799 8 - 644146 646969 -chrXIV 648856 651744 HC_gene_7800 28 - 648927 651744 -chrXIV 652318 653149 HC_gene_7801 5 - 652333 653149 -chrXIV 654313 655383 HC_gene_7802 119 - 654565 655383 -chrXIV 655404 661396 MC_gene_7803 1 - 660777 661396 -chrXIV 661416 661909 HC_gene_7804 5 - 661434 661909 -chrXIV 661664 662399 HC_gene_7805 2 - 661664 662399 -chrXIV 663178 663621 LC_gene_7806 1 - 663208 663621 -chrXIV 663760 664501 MC_gene_7807 1 - 663760 664501 -chrXIV 667164 668138 MC_gene_7808 2 - 667293 668138 -chrXIV 668327 669505 LC_gene_7809 1 - 668327 669505 -chrXIV 669447 670219 HC_gene_7810 132 - 669447 670219 -chrXIV 672105 672495 MC_gene_7811 1 - 672105 672495 -chrXIV 672835 674709 HC_gene_7812 47 - 672938 674709 -chrXIV 676893 678518 HC_gene_7813 78 - 676970 678518 -chrXIV 680501 685714 HC_gene_7814 3 - 680580 685714 -chrXIV 686749 687644 HC_gene_7815 130 - 687138 687644 -chrXIV 690140 690701 LC_gene_7816 1 - 690140 690701 -chrXIV 691541 691949 MC_gene_7817 1 - 691541 691949 -chrXIV 692686 694056 HC_gene_7818 12 - 692853 694056 -chrXIV 694118 694833 HC_gene_7819 289 - 694207 694833 -chrXIV 694936 695344 HC_gene_7820 189 - 694936 695344 -chrXIV 697459 699479 HC_gene_7821 24 - 697549 699479 -chrXIV 700340 701684 HC_gene_7822 52 - 700367 701684 -chrXIV 702256 702462 LC_gene_7823 1 - 702256 702462 -chrXIV 705873 707741 LC_gene_7824 1 - 705873 707741 -chrXIV 711278 712979 LC_gene_7825 1 - 711302 712979 -chrXIV 712930 715850 HC_gene_7826 924 - 712930 715850 -chrXIV 715364 715936 HC_gene_7827 12 - 715364 715936 -chrXIV 716102 717155 HC_gene_7828 93 - 716316 717155 -chrXIV 717175 719073 HC_gene_7829 9 - 718587 719073 -chrXIV 719108 720725 HC_gene_7830 74 - 719153 720725 -chrXIV 720803 723156 HC_gene_7831 197 - 720931 723156 -chrXIV 723191 724334 HC_gene_7832 96 - 723191 724334 -chrXIV 725137 725967 LC_gene_7833 1 - 725137 725967 -chrXIV 726628 727226 HC_gene_7834 1 - 726628 727226 -chrXIV 727349 728266 HC_gene_7835 13 - 727356 728266 -chrXIV 728207 730630 HC_gene_7836 28 - 728207 730630 -chrXIV 733224 736081 HC_gene_7837 5 - 733229 736081 -chrXIV 736157 736908 MC_gene_7838 1 - 736294 736908 -chrXIV 740039 741904 MC_gene_7839 1 - 740039 741904 -chrXIV 740226 742191 MC_gene_7840 2 - 740226 742191 -chrXIV 742292 743627 HC_gene_7841 73 - 742320 743627 -chrXIV 744136 745808 MC_gene_7842 1 - 744136 745808 -chrXIV 746191 746733 MC_gene_7843 1 - 746191 746733 -chrXIV 748887 750020 HC_gene_7844 4 - 748887 750020 -chrXIV 750280 755086 HC_gene_7845 4 - 750280 755086 -chrXIV 755442 759146 HC_gene_7846 23 - 755667 759146 -chrXIV 759755 763875 HC_gene_7847 13 - 759804 763875 -chrXIV 764702 769381 HC_gene_7848 1 - 764702 769381 -chrXIV 770187 771857 MC_gene_7849 3 - 770187 771857 -chrXIV 773807 774466 MC_gene_7850 1 - 773807 774466 -chrXIV 774658 776371 MC_gene_7851 2 - 774658 776371 -chrXIV 777274 779232 MC_gene_7852 4 - 777274 779232 -chrXIV 779218 779763 HC_gene_7853 2 - 779218 779763 -chrXV 2683 3055 MC_gene_7854 1 + 2683 3055 -chrXV 3274 4051 MC_gene_7855 1 + 3274 4051 -chrXV 4147 5596 LC_gene_7856 1 + 4147 5596 -chrXV 5930 8229 HC_gene_7857 30 + 5930 8228 -chrXV 8889 10537 HC_gene_7858 19 + 8889 10537 -chrXV 14102 14869 MC_gene_7859 1 + 14102 14869 -chrXV 14949 15400 HC_gene_7860 2 + 14949 15400 -chrXV 15749 16858 HC_gene_7861 3 + 15749 16849 -chrXV 17945 18219 MC_gene_7862 1 + 17945 18219 -chrXV 18129 18740 MC_gene_7863 1 + 18129 18740 -chrXV 20094 21531 MC_gene_7864 1 + 20094 21531 -chrXV 21856 22489 HC_gene_7865 5 + 21856 22311 -chrXV 28462 33897 HC_gene_7866 28 + 28462 33840 -chrXV 34381 35505 HC_gene_7867 6 + 34381 35505 -chrXV 36033 38730 HC_gene_7868 2 + 36033 38730 -chrXV 38787 39359 HC_gene_7869 3 + 38787 39064 -chrXV 39857 40968 HC_gene_7870 3 + 39857 40813 -chrXV 40988 42742 HC_gene_7871 1 + 40988 42737 -chrXV 43672 44792 HC_gene_7872 147 + 43672 44783 -chrXV 44917 45839 HC_gene_7873 75 + 44917 45754 -chrXV 45861 47255 LC_gene_7874 1 + 45861 47255 -chrXV 48849 49582 HC_gene_7875 59 + 48849 49510 -chrXV 53074 54769 HC_gene_7876 49 + 53074 54593 -chrXV 55543 56392 HC_gene_7877 111 + 55543 56345 -chrXV 56422 60200 HC_gene_7878 110 + 56422 60118 -chrXV 61349 61762 LC_gene_7879 1 + 61349 61762 -chrXV 65563 67450 HC_gene_7880 39 + 65563 67326 -chrXV 69401 69746 MC_gene_7881 1 + 69401 69746 -chrXV 70289 71135 HC_gene_7882 164 + 70289 71062 -chrXV 72436 72777 HC_gene_7883 2 + 72436 72777 -chrXV 73024 73758 MC_gene_7884 1 + 73024 73758 -chrXV 74169 77483 HC_gene_7885 15 + 74169 77352 -chrXV 77532 78311 HC_gene_7886 431 + 77532 78265 -chrXV 78311 79709 LC_gene_7887 1 + 78311 79702 -chrXV 80325 81571 HC_gene_7888 2391 + 80325 81272 -chrXV 82553 83057 LC_gene_7889 1 + 82553 83057 -chrXV 83479 85472 HC_gene_7890 61 + 83479 85387 -chrXV 87476 88424 HC_gene_7891 118 + 87476 88082 -chrXV 88444 89708 HC_gene_7892 137 + 88444 89588 -chrXV 90866 91572 MC_gene_7893 1 + 90866 91572 -chrXV 91651 92047 HC_gene_7894 1 + 91651 92044 -chrXV 92071 92425 LC_gene_7895 1 + 92071 92425 -chrXV 96651 97460 HC_gene_7896 79 + 96651 97368 -chrXV 97512 99616 HC_gene_7897 4 + 97512 99584 -chrXV 99676 101315 HC_gene_7898 12 + 99676 101264 -chrXV 101480 102278 HC_gene_7899 21 + 101480 101764 -chrXV 102886 103382 HC_gene_7900 19 + 102886 103350 -chrXV 104295 106383 HC_gene_7901 16 + 104295 106383 -chrXV 106428 108400 HC_gene_7902 49 + 106428 108286 -chrXV 109162 110170 HC_gene_7903 40 + 109162 110165 -chrXV 110239 110980 HC_gene_7904 1593 + 110239 110876 -chrXV 112043 113499 HC_gene_7905 20 + 112043 113499 -chrXV 115107 115734 LC_gene_7906 1 + 115107 115734 -chrXV 116381 116928 LC_gene_7907 1 + 116381 116928 -chrXV 117689 118085 MC_gene_7908 1 + 117689 118085 -chrXV 117984 123588 MC_gene_7909 1 + 117984 123588 -chrXV 120108 123641 MC_gene_7910 1 + 120108 123607 -chrXV 123829 126117 HC_gene_7911 90 + 123829 125995 -chrXV 128068 128564 LC_gene_7912 1 + 128068 128473 -chrXV 129017 132665 HC_gene_7913 5 + 129017 132588 -chrXV 136032 136956 HC_gene_7914 15 + 136032 136487 -chrXV 137354 138092 MC_gene_7915 1 + 137354 138092 -chrXV 142791 144090 HC_gene_7916 81 + 142791 144090 -chrXV 144161 145382 HC_gene_7917 188 + 144161 145288 -chrXV 147369 150469 HC_gene_7918 11 + 147369 150376 -chrXV 150926 151894 LC_gene_7919 1 + 150926 151894 -chrXV 153363 153977 LC_gene_7920 1 + 153363 153831 -chrXV 154909 155128 MC_gene_7921 1 + 154909 155128 -chrXV 159115 159663 HC_gene_7922 144 + 159115 159582 -chrXV 161455 162424 MC_gene_7923 1 + 161455 162424 -chrXV 163306 165479 MC_gene_7924 1 + 163306 165479 -chrXV 165614 167070 HC_gene_7925 10 + 165614 167070 -chrXV 168417 170112 HC_gene_7926 51 + 168417 170081 -chrXV 170324 170670 LC_gene_7927 1 + 170324 170604 -chrXV 173151 180566 HC_gene_7928 1 + 173151 180391 -chrXV 181666 185296 HC_gene_7929 3 + 181666 185296 -chrXV 185403 185988 HC_gene_7930 672 + 185403 185781 -chrXV 187000 189728 HC_gene_7931 14 + 187000 189678 -chrXV 193215 193657 LC_gene_7932 1 + 193215 193657 -chrXV 194946 196444 HC_gene_7933 18 + 194946 196419 -chrXV 196507 197181 HC_gene_7934 120 + 196507 197107 -chrXV 198923 201098 HC_gene_7935 28 + 198923 201098 -chrXV 202052 202714 MC_gene_7936 1 + 202052 202714 -chrXV 202712 204568 LC_gene_7937 1 + 202712 204568 -chrXV 204684 205171 LC_gene_7938 1 + 204684 205162 -chrXV 206120 206371 LC_gene_7939 1 + 206120 206371 -chrXV 206946 207517 LC_gene_7940 1 + 206946 207517 -chrXV 208230 209457 LC_gene_7941 1 + 208230 209457 -chrXV 212209 214066 HC_gene_7942 164 + 212209 213899 -chrXV 216623 217152 MC_gene_7943 1 + 216623 217152 -chrXV 217156 218852 HC_gene_7944 164 + 217156 218696 -chrXV 219137 220625 HC_gene_7945 939 + 219137 220616 -chrXV 220738 223054 HC_gene_7946 45 + 220738 223050 -chrXV 223187 224353 HC_gene_7947 51 + 223187 224353 -chrXV 225675 226575 MC_gene_7948 1 + 225675 226565 -chrXV 226809 227491 MC_gene_7949 1 + 226809 227491 -chrXV 227658 228267 MC_gene_7950 1 + 227658 228267 -chrXV 228533 230004 HC_gene_7951 56 + 228533 229914 -chrXV 230074 231428 HC_gene_7952 40 + 230074 231428 -chrXV 232395 233843 HC_gene_7953 1 + 232395 233843 -chrXV 234275 234728 MC_gene_7954 1 + 234275 234633 -chrXV 234748 236387 HC_gene_7955 1 + 234748 234917 -chrXV 236718 238526 HC_gene_7956 24 + 236718 238410 -chrXV 238572 240420 HC_gene_7957 134 + 238572 240206 -chrXV 241704 242856 HC_gene_7958 2 + 241704 242856 -chrXV 243052 246942 HC_gene_7959 12 + 243052 246932 -chrXV 247098 248480 HC_gene_7960 18 + 247098 248366 -chrXV 249764 251158 HC_gene_7961 17 + 249764 251131 -chrXV 252982 253279 LC_gene_7962 1 + 252982 253279 -chrXV 254267 255184 HC_gene_7963 4384 + 254267 254804 -chrXV 255304 256292 HC_gene_7964 275 + 255304 256249 -chrXV 256350 257520 HC_gene_7965 6 + 256350 256750 -chrXV 257540 259297 HC_gene_7966 32 + 257540 259181 -chrXV 259343 259862 HC_gene_7967 14 + 259343 259689 -chrXV 259894 263302 HC_gene_7968 3 + 259894 263302 -chrXV 263415 265261 HC_gene_7969 17 + 263415 265255 -chrXV 265364 266273 HC_gene_7970 30 + 265364 266273 -chrXV 266731 267427 MC_gene_7971 1 + 266731 267427 -chrXV 267826 268208 HC_gene_7972 2 + 267826 268208 -chrXV 267912 270094 HC_gene_7973 231 + 267912 269837 -chrXV 270885 271875 LC_gene_7974 1 + 270885 271875 -chrXV 274893 276979 HC_gene_7975 11 + 274893 276979 -chrXV 277263 277652 MC_gene_7976 1 + 277263 277652 -chrXV 278054 280279 HC_gene_7977 11 + 278054 280274 -chrXV 281660 282351 HC_gene_7978 10 + 281660 282328 -chrXV 286045 288146 HC_gene_7979 84 + 286045 288045 -chrXV 288754 290809 HC_gene_7980 26 + 288754 290777 -chrXV 292440 294788 HC_gene_7981 6 + 292440 294788 -chrXV 296410 298949 HC_gene_7982 1 + 296410 298918 -chrXV 299536 300402 HC_gene_7983 70 + 299536 300308 -chrXV 301098 301355 MC_gene_7984 1 + 301098 301325 -chrXV 303417 307861 HC_gene_7985 74 + 303417 307688 -chrXV 307881 309371 HC_gene_7986 84 + 307881 309255 -chrXV 309478 310006 LC_gene_7987 1 + 309478 310006 -chrXV 310271 311180 HC_gene_7988 52 + 310271 311095 -chrXV 311382 313482 LC_gene_7989 1 + 311382 313482 -chrXV 315275 316591 HC_gene_7990 5 + 315275 315851 -chrXV 316717 321748 HC_gene_7991 57 + 316717 321669 -chrXV 322382 323439 MC_gene_7992 1 + 322382 323439 -chrXV 323203 324216 MC_gene_7993 1 + 323203 324216 -chrXV 324602 326367 HC_gene_7994 38 + 324602 326270 -chrXV 326790 329139 HC_gene_7995 34 + 326790 329106 -chrXV 329375 331475 HC_gene_7996 108 + 329375 331475 -chrXV 331423 333198 HC_gene_7997 23 + 331423 333169 -chrXV 333541 334743 HC_gene_7998 112 + 333541 334639 -chrXV 335342 336461 MC_gene_7999 1 + 335342 336453 -chrXV 336613 337421 MC_gene_8000 1 + 336613 337421 -chrXV 337576 338791 MC_gene_8001 2 + 337576 338791 -chrXV 338916 339467 LC_gene_8002 1 + 338916 339467 -chrXV 342878 345930 HC_gene_8003 10 + 342878 345930 -chrXV 348321 349063 MC_gene_8004 1 + 348321 349063 -chrXV 348704 349281 MC_gene_8005 1 + 348704 349202 -chrXV 349840 353962 HC_gene_8006 3 + 349840 353929 -chrXV 354380 355140 LC_gene_8007 1 + 354380 355140 -chrXV 355848 356350 MC_gene_8008 1 + 355848 356350 -chrXV 356490 357306 HC_gene_8009 17 + 356490 357294 -chrXV 357414 360575 HC_gene_8010 111 + 357414 360444 -chrXV 361378 364005 HC_gene_8011 7 + 361378 364005 -chrXV 364320 366094 HC_gene_8012 2 + 364320 366065 -chrXV 366421 367104 HC_gene_8013 7 + 366421 367063 -chrXV 368022 369208 MC_gene_8014 1 + 368022 369208 -chrXV 369622 370684 HC_gene_8015 13 + 369622 370537 -chrXV 371169 372492 HC_gene_8016 82 + 371169 372492 -chrXV 374420 374835 MC_gene_8017 1 + 374420 374835 -chrXV 375416 376049 MC_gene_8018 1 + 375416 376049 -chrXV 378141 380990 HC_gene_8019 38 + 378141 380990 -chrXV 381001 383041 HC_gene_8020 246 + 381001 382912 -chrXV 385181 386511 HC_gene_8021 6 + 385181 386511 -chrXV 386721 389569 HC_gene_8022 14 + 386721 389569 -chrXV 389187 390103 HC_gene_8023 62 + 389187 390103 -chrXV 389616 391374 HC_gene_8024 1 + 389616 391374 -chrXV 392304 393144 MC_gene_8025 1 + 392304 393144 -chrXV 393714 394189 MC_gene_8026 1 + 393714 394189 -chrXV 396511 397941 LC_gene_8027 1 + 396511 397824 -chrXV 400343 401366 HC_gene_8028 70 + 400343 401285 -chrXV 401530 402896 HC_gene_8029 31 + 401530 402739 -chrXV 405600 406799 HC_gene_8030 138 + 405600 406799 -chrXV 406836 408266 HC_gene_8031 28 + 406836 408266 -chrXV 408371 409925 HC_gene_8032 78 + 408371 409711 -chrXV 410464 412661 HC_gene_8033 74 + 410464 412489 -chrXV 412759 413773 HC_gene_8034 46 + 412759 413709 -chrXV 413830 414567 HC_gene_8035 304 + 413830 414481 -chrXV 417942 418524 MC_gene_8036 1 + 417942 418524 -chrXV 418166 418919 MC_gene_8037 1 + 418166 418633 -chrXV 421886 422304 MC_gene_8038 1 + 421886 422238 -chrXV 422416 424794 HC_gene_8039 3 + 422416 424794 -chrXV 424813 425337 HC_gene_8040 11 + 424813 425030 -chrXV 425455 426123 LC_gene_8041 1 + 425455 426123 -chrXV 426619 427132 MC_gene_8042 1 + 426619 427122 -chrXV 427633 427850 HC_gene_8043 10 + 427633 427846 -chrXV 432117 433494 HC_gene_8044 36 + 432117 433456 -chrXV 435886 436574 HC_gene_8045 2 + 435886 436574 -chrXV 437335 438394 MC_gene_8046 1 + 437335 438394 -chrXV 438643 438913 MC_gene_8047 1 + 438643 438913 -chrXV 440581 441136 LC_gene_8048 1 + 440581 441136 -chrXV 441311 443042 HC_gene_8049 133 + 441311 442766 -chrXV 443459 443935 LC_gene_8050 1 + 443459 443935 -chrXV 444136 444628 HC_gene_8051 19 + 444136 444628 -chrXV 444662 446077 HC_gene_8052 5874 + 444662 446077 -chrXV 445352 447068 HC_gene_8053 1 + 445352 447068 -chrXV 447196 448918 HC_gene_8054 171 + 447196 448899 -chrXV 449223 451773 HC_gene_8055 30 + 449223 451705 -chrXV 453689 455940 HC_gene_8056 22 + 453689 455921 -chrXV 458164 460049 MC_gene_8057 1 + 458164 460049 -chrXV 463085 463951 MC_gene_8058 1 + 463085 463951 -chrXV 464702 466871 HC_gene_8059 16 + 464702 466674 -chrXV 468178 469307 HC_gene_8060 38 + 468178 469307 -chrXV 471859 473708 HC_gene_8061 331 + 471859 473439 -chrXV 474591 475700 HC_gene_8062 2 + 474591 475464 -chrXV 476260 477181 HC_gene_8063 10 + 476260 477181 -chrXV 478219 479342 MC_gene_8064 1 + 478219 479342 -chrXV 479456 481877 HC_gene_8065 26 + 479456 481811 -chrXV 481971 483219 HC_gene_8066 130 + 481971 483206 -chrXV 487633 489853 HC_gene_8067 44 + 487633 489853 -chrXV 489990 490590 LC_gene_8068 1 + 489990 490590 -chrXV 491394 493027 MC_gene_8069 1 + 491394 493027 -chrXV 493079 494928 HC_gene_8070 93 + 493079 494928 -chrXV 494928 497171 HC_gene_8071 18 + 494928 497170 -chrXV 497431 498897 LC_gene_8072 1 + 497431 498897 -chrXV 502695 503756 HC_gene_8073 87 + 502695 503663 -chrXV 504741 505188 HC_gene_8074 4 + 504741 505185 -chrXV 505764 507046 HC_gene_8075 2456 + 505764 506896 -chrXV 507046 507976 MC_gene_8076 1 + 507046 507976 -chrXV 507729 509273 MC_gene_8077 1 + 507729 509273 -chrXV 509470 510464 LC_gene_8078 1 + 509470 510464 -chrXV 511706 513201 HC_gene_8079 212 + 511706 513194 -chrXV 513201 514994 LC_gene_8080 1 + 513201 514994 -chrXV 515168 516638 HC_gene_8081 173 + 515168 516393 -chrXV 517451 520081 HC_gene_8082 44 + 517451 520081 -chrXV 519025 520362 HC_gene_8083 50 + 519025 520362 -chrXV 521073 522693 HC_gene_8084 43 + 521073 522693 -chrXV 522948 525101 HC_gene_8085 109 + 522948 525005 -chrXV 525175 527749 HC_gene_8086 3 + 525175 527237 -chrXV 527769 528787 HC_gene_8087 11 + 527769 528777 -chrXV 528856 530320 HC_gene_8088 28 + 528856 530307 -chrXV 530395 531458 HC_gene_8089 10 + 530395 531458 -chrXV 531434 533936 HC_gene_8090 11 + 531434 533845 -chrXV 533956 537144 HC_gene_8091 24 + 533956 537138 -chrXV 537366 538672 HC_gene_8092 13 + 537366 538661 -chrXV 544968 546602 HC_gene_8093 325 + 544968 546471 -chrXV 546696 548783 HC_gene_8094 32 + 546696 548740 -chrXV 549082 549745 MC_gene_8095 1 + 549082 549745 -chrXV 550032 550265 MC_gene_8096 1 + 550032 550265 -chrXV 550485 552231 HC_gene_8097 94 + 550485 552199 -chrXV 552557 553179 MC_gene_8098 1 + 552557 553179 -chrXV 553164 553816 MC_gene_8099 1 + 553164 553816 -chrXV 556745 557061 MC_gene_8100 1 + 556745 557061 -chrXV 559933 564487 HC_gene_8101 12 + 559933 564369 -chrXV 569796 570429 LC_gene_8102 1 + 569796 570424 -chrXV 570624 572181 MC_gene_8103 4 + 570624 572178 -chrXV 573103 574974 HC_gene_8104 33 + 573103 574880 -chrXV 575058 578130 HC_gene_8105 396 + 575058 577945 -chrXV 578235 578406 HC_gene_8106 1 + 578235 578406 -chrXV 578458 578619 HC_gene_8107 1 + 578458 578619 -chrXV 579061 580164 MC_gene_8108 1 + 579061 580164 -chrXV 580153 581652 HC_gene_8109 556 + 580153 581631 -chrXV 584268 586837 MC_gene_8110 1 + 584268 586837 -chrXV 586647 589879 HC_gene_8111 8 + 586647 589747 -chrXV 592862 594304 HC_gene_8112 242 + 592862 594272 -chrXV 594579 595026 LC_gene_8113 1 + 594579 595026 -chrXV 597220 600766 HC_gene_8114 5 + 597220 600766 -chrXV 602709 603173 LC_gene_8115 1 + 602709 603173 -chrXV 606580 608721 HC_gene_8116 29 + 606580 608649 -chrXV 608786 609306 LC_gene_8117 1 + 608786 609306 -chrXV 611587 611910 LC_gene_8118 1 + 611587 611900 -chrXV 611970 612745 HC_gene_8119 161 + 611970 612598 -chrXV 617179 618111 HC_gene_8120 1 + 617179 618111 -chrXV 618689 624729 HC_gene_8121 1912 + 618689 624729 -chrXV 624677 626718 HC_gene_8122 14 + 624677 626645 -chrXV 628439 629263 LC_gene_8123 1 + 628439 629263 -chrXV 630646 631007 LC_gene_8124 1 + 630646 631007 -chrXV 631359 632144 LC_gene_8125 1 + 631359 632144 -chrXV 632147 633388 HC_gene_8126 69 + 632147 633270 -chrXV 633781 636853 HC_gene_8127 15 + 633781 636843 -chrXV 637024 638851 MC_gene_8128 1 + 637024 638851 -chrXV 639160 639479 MC_gene_8129 1 + 639160 639433 -chrXV 640152 640700 MC_gene_8130 1 + 640152 640700 -chrXV 642702 643565 HC_gene_8131 128 + 642702 643556 -chrXV 644522 647166 HC_gene_8132 28 + 644522 647158 -chrXV 649273 652095 HC_gene_8133 189 + 649273 651931 -chrXV 654164 656284 HC_gene_8134 1 + 654164 656257 -chrXV 657235 658437 HC_gene_8135 47 + 657235 658437 -chrXV 658631 659854 HC_gene_8136 53 + 658631 659790 -chrXV 662288 663764 HC_gene_8137 111 + 662288 663715 -chrXV 664670 665628 MC_gene_8138 1 + 664670 665587 -chrXV 666495 667603 LC_gene_8139 1 + 666495 667603 -chrXV 667869 670633 HC_gene_8140 7 + 667869 670633 -chrXV 672614 673730 MC_gene_8141 1 + 672614 673730 -chrXV 675435 676643 HC_gene_8142 25 + 675435 675910 -chrXV 677089 678035 HC_gene_8143 7 + 677089 677973 -chrXV 679306 681407 HC_gene_8144 420 + 679306 681407 -chrXV 681485 682228 HC_gene_8145 13 + 681485 682228 -chrXV 682428 683719 HC_gene_8146 4 + 682428 683719 -chrXV 683959 685647 HC_gene_8147 293 + 683959 685565 -chrXV 685680 689357 HC_gene_8148 8 + 685680 689311 -chrXV 689588 692190 HC_gene_8149 108 + 689588 692190 -chrXV 694437 698188 HC_gene_8150 13 + 694437 698188 -chrXV 701219 701658 LC_gene_8151 1 + 701219 701612 -chrXV 701781 702970 HC_gene_8152 6 + 701781 702948 -chrXV 703668 704440 MC_gene_8153 1 + 703668 704440 -chrXV 709248 710137 MC_gene_8154 1 + 709248 710122 -chrXV 710388 711720 HC_gene_8155 17 + 710388 711691 -chrXV 712108 712764 HC_gene_8156 1 + 712108 712763 -chrXV 712794 715591 HC_gene_8157 20 + 712794 715558 -chrXV 717069 718615 HC_gene_8158 122 + 717069 718536 -chrXV 720216 720662 MC_gene_8159 1 + 720216 720548 -chrXV 721921 722774 HC_gene_8160 659 + 721921 722745 -chrXV 722890 725820 HC_gene_8161 827 + 722890 725602 -chrXV 727481 730020 HC_gene_8162 130 + 727481 729860 -chrXV 733757 736306 HC_gene_8163 15 + 733757 736306 -chrXV 738279 739047 HC_gene_8164 421 + 738279 738830 -chrXV 742772 745590 HC_gene_8165 74 + 742772 745590 -chrXV 749195 752146 HC_gene_8166 47 + 749195 752139 -chrXV 755319 756447 HC_gene_8167 116 + 755319 756390 -chrXV 757873 758346 HC_gene_8168 130 + 757873 758346 -chrXV 757879 759518 HC_gene_8169 82 + 757879 759289 -chrXV 759738 760897 HC_gene_8170 24 + 759738 760863 -chrXV 761493 761866 LC_gene_8171 1 + 761493 761802 -chrXV 761912 762823 LC_gene_8172 1 + 761912 762823 -chrXV 762823 766749 HC_gene_8173 8 + 762823 766729 -chrXV 768360 770085 HC_gene_8174 39 + 768360 770085 -chrXV 770015 770611 HC_gene_8175 7 + 770015 770549 -chrXV 770747 772404 HC_gene_8176 595 + 770747 772304 -chrXV 772458 774402 HC_gene_8177 38 + 772458 774327 -chrXV 774467 775599 HC_gene_8178 312 + 774467 775419 -chrXV 775666 778386 HC_gene_8179 10 + 775666 778317 -chrXV 780104 780851 HC_gene_8180 124 + 780104 780599 -chrXV 780890 781872 HC_gene_8181 79 + 780890 781612 -chrXV 781892 783335 MC_gene_8182 1 + 781892 783335 -chrXV 783668 784757 HC_gene_8183 41 + 783668 784757 -chrXV 784709 787076 HC_gene_8184 159 + 784709 786935 -chrXV 787160 788940 HC_gene_8185 63 + 787160 788897 -chrXV 789396 790925 LC_gene_8186 1 + 789396 790925 -chrXV 792492 794097 HC_gene_8187 32 + 792492 794045 -chrXV 795163 795805 LC_gene_8188 1 + 795163 795801 -chrXV 797291 798811 HC_gene_8189 1504 + 797291 798695 -chrXV 802524 803008 LC_gene_8190 1 + 802524 803008 -chrXV 803633 804309 HC_gene_8191 152 + 803633 804305 -chrXV 804356 805293 HC_gene_8192 195 + 804356 805104 -chrXV 810972 811607 HC_gene_8193 210 + 810972 811561 -chrXV 811661 813395 HC_gene_8194 24 + 811661 813395 -chrXV 813931 816186 HC_gene_8195 85 + 813931 816186 -chrXV 817228 818450 HC_gene_8196 83 + 817228 818449 -chrXV 818641 821034 HC_gene_8197 334 + 818641 821034 -chrXV 820996 822465 HC_gene_8198 18 + 820996 822465 -chrXV 824540 824915 MC_gene_8199 1 + 824540 824915 -chrXV 825270 825443 MC_gene_8200 1 + 825270 825443 -chrXV 826307 828066 HC_gene_8201 7 + 826307 828040 -chrXV 831136 832293 LC_gene_8202 1 + 831136 832293 -chrXV 832331 832715 HC_gene_8203 33 + 832331 832587 -chrXV 832788 834536 HC_gene_8204 86 + 832788 834444 -chrXV 837082 837694 HC_gene_8205 24 + 837082 837694 -chrXV 837672 839460 HC_gene_8206 51 + 837672 839460 -chrXV 841271 842160 HC_gene_8207 415 + 841271 841984 -chrXV 842402 842748 HC_gene_8208 9 + 842402 842690 -chrXV 842810 843802 HC_gene_8209 23 + 842810 843798 -chrXV 843802 845010 MC_gene_8210 1 + 843802 845010 -chrXV 844899 845131 MC_gene_8211 1 + 844899 845131 -chrXV 844962 845760 MC_gene_8212 1 + 844962 845760 -chrXV 847387 848381 HC_gene_8213 229 + 847387 848313 -chrXV 848429 849600 HC_gene_8214 7 + 848429 849600 -chrXV 849624 850227 HC_gene_8215 628 + 849624 850227 -chrXV 850255 851091 HC_gene_8216 274 + 850255 850932 -chrXV 853363 854201 HC_gene_8217 24 + 853363 854201 -chrXV 854498 855040 HC_gene_8218 218 + 854498 855040 -chrXV 861002 865748 HC_gene_8219 4 + 861002 865672 -chrXV 866416 866674 MC_gene_8220 1 + 866416 866674 -chrXV 867069 868225 HC_gene_8221 3908 + 867069 868119 -chrXV 868293 869109 HC_gene_8222 224 + 868293 869101 -chrXV 869140 870127 HC_gene_8223 37 + 869140 870127 -chrXV 870103 874255 HC_gene_8224 10 + 870103 874255 -chrXV 874424 874998 HC_gene_8225 3 + 874424 874998 -chrXV 875041 877118 LC_gene_8226 1 + 875041 877118 -chrXV 878069 880826 HC_gene_8227 25 + 878069 880810 -chrXV 880986 882725 HC_gene_8228 13 + 880986 882725 -chrXV 882777 884364 HC_gene_8229 355 + 882777 884364 -chrXV 884410 885733 HC_gene_8230 1 + 884410 885580 -chrXV 886221 887994 HC_gene_8231 4 + 886221 887966 -chrXV 888955 891661 HC_gene_8232 61 + 888955 891661 -chrXV 891937 892698 MC_gene_8233 1 + 891937 892698 -chrXV 892787 894229 LC_gene_8234 1 + 892787 894229 -chrXV 894741 895608 LC_gene_8235 1 + 894741 895608 -chrXV 898644 899001 HC_gene_8236 8 + 898644 898941 -chrXV 903981 904468 MC_gene_8237 1 + 903981 904468 -chrXV 904672 906515 HC_gene_8238 94 + 904672 906212 -chrXV 907959 908347 MC_gene_8239 1 + 907959 908347 -chrXV 909312 911876 HC_gene_8240 89 + 909312 911786 -chrXV 912346 913599 HC_gene_8241 28 + 912346 913599 -chrXV 912783 914093 HC_gene_8242 7 + 912783 914068 -chrXV 915950 918335 HC_gene_8243 19 + 915950 918324 -chrXV 923075 923185 MC_gene_8244 1 + 923075 923185 -chrXV 923300 923976 LC_gene_8245 1 + 923300 923976 -chrXV 925539 931048 HC_gene_8246 112 + 925539 930816 -chrXV 931227 931730 MC_gene_8247 1 + 931227 931730 -chrXV 932310 936741 MC_gene_8248 4 + 932310 936725 -chrXV 937348 939661 LC_gene_8249 1 + 937348 939661 -chrXV 943623 944446 HC_gene_8250 739 + 943623 944427 -chrXV 944563 946190 HC_gene_8251 5 + 944563 946176 -chrXV 949752 954058 HC_gene_8252 1 + 949752 953992 -chrXV 954210 956903 HC_gene_8253 19 + 954210 956903 -chrXV 956833 958243 HC_gene_8254 20 + 956833 958243 -chrXV 958392 960283 MC_gene_8255 1 + 958392 960283 -chrXV 960878 966703 HC_gene_8256 216 + 960878 966605 -chrXV 968093 968800 LC_gene_8257 1 + 968093 968800 -chrXV 968807 969295 HC_gene_8258 8 + 968807 969295 -chrXV 969139 969601 HC_gene_8259 2 + 969139 969601 -chrXV 969222 970616 HC_gene_8260 38 + 969222 970616 -chrXV 973757 976355 HC_gene_8261 2 + 973757 976247 -chrXV 976978 977363 MC_gene_8262 1 + 976978 977309 -chrXV 978486 979741 HC_gene_8263 2 + 978486 979741 -chrXV 979713 980138 HC_gene_8264 2 + 979713 980094 -chrXV 980871 981122 HC_gene_8265 2 + 980871 981122 -chrXV 981663 984987 HC_gene_8266 11 + 981663 984941 -chrXV 988112 989025 MC_gene_8267 1 + 988112 989025 -chrXV 989639 992996 HC_gene_8268 10 + 989639 992996 -chrXV 995071 996928 MC_gene_8269 1 + 995071 996928 -chrXV 997136 998550 HC_gene_8270 20 + 997136 998438 -chrXV 1001163 1002089 LC_gene_8271 1 + 1001163 1002089 -chrXV 1003526 1003913 MC_gene_8272 1 + 1003526 1003913 -chrXV 1003957 1005025 HC_gene_8273 60 + 1003957 1005025 -chrXV 1004644 1007061 HC_gene_8274 73 + 1004644 1006894 -chrXV 1007193 1009360 HC_gene_8275 101 + 1007193 1009235 -chrXV 1009970 1011202 HC_gene_8276 27 + 1009970 1011202 -chrXV 1011068 1013103 HC_gene_8277 42 + 1011068 1013069 -chrXV 1019020 1020040 HC_gene_8278 4 + 1019020 1020008 -chrXV 1023697 1024544 HC_gene_8279 2 + 1023697 1024544 -chrXV 1025093 1025797 LC_gene_8280 1 + 1025093 1025797 -chrXV 1025980 1026783 HC_gene_8281 117 + 1025980 1026759 -chrXV 1026810 1028275 HC_gene_8282 22 + 1026810 1028160 -chrXV 1033862 1034554 MC_gene_8283 1 + 1033862 1034554 -chrXV 1036766 1037759 HC_gene_8284 3 + 1036766 1037659 -chrXV 1037779 1039496 MC_gene_8285 1 + 1037779 1039493 -chrXV 1039790 1041520 HC_gene_8286 117 + 1039790 1041468 -chrXV 1044719 1046140 HC_gene_8287 6 + 1044719 1046116 -chrXV 1046191 1048147 HC_gene_8288 15 + 1046191 1048147 -chrXV 1050071 1051130 HC_gene_8289 4 + 1050071 1051130 -chrXV 1051081 1053012 HC_gene_8290 4 + 1051081 1053012 -chrXV 1053229 1053708 LC_gene_8291 1 + 1053229 1053708 -chrXV 1054833 1057818 HC_gene_8292 5 + 1054833 1057799 -chrXV 1058090 1058897 MC_gene_8293 1 + 1058090 1058897 -chrXV 1059212 1060091 HC_gene_8294 378 + 1059212 1060090 -chrXV 1061469 1064688 HC_gene_8295 4 + 1061469 1064688 -chrXV 1064607 1066456 HC_gene_8296 56 + 1064607 1066456 -chrXV 1066823 1068762 HC_gene_8297 1 + 1066823 1068762 -chrXV 1075103 1076309 MC_gene_8298 1 + 1075103 1076309 -chrXV 1076746 1077956 MC_gene_8299 1 + 1076746 1077956 -chrXV 1076804 1078387 MC_gene_8300 1 + 1076804 1078387 -chrXV 1078275 1080132 LC_gene_8301 1 + 1078275 1080132 -chrXV 1568 2180 MC_gene_8302 1 - 1568 2180 -chrXV 2933 3447 MC_gene_8303 1 - 2933 3447 -chrXV 3042 3873 MC_gene_8304 1 - 3042 3873 -chrXV 3918 5331 HC_gene_8305 3 - 3918 5331 -chrXV 5357 6889 HC_gene_8306 33 - 5415 6889 -chrXV 8292 8632 HC_gene_8307 5 - 8292 8632 -chrXV 8945 9688 MC_gene_8308 1 - 8945 9688 -chrXV 13306 13965 LC_gene_8309 1 - 13306 13965 -chrXV 14579 15595 HC_gene_8310 27 - 14579 15595 -chrXV 15419 16618 HC_gene_8311 3 - 15419 16618 -chrXV 16715 18027 HC_gene_8312 56 - 16717 18027 -chrXV 19145 21334 HC_gene_8313 105 - 19153 21334 -chrXV 22315 23045 MC_gene_8314 1 - 22315 23045 -chrXV 22426 24682 MC_gene_8315 1 - 22426 24682 -chrXV 24345 26955 MC_gene_8316 2 - 24345 26955 -chrXV 27018 27576 MC_gene_8317 1 - 27018 27576 -chrXV 28572 29701 MC_gene_8318 2 - 28572 29701 -chrXV 28578 31684 MC_gene_8319 1 - 28578 31684 -chrXV 34508 35644 HC_gene_8320 2 - 34508 35644 -chrXV 36748 38613 HC_gene_8321 1 - 36748 38613 -chrXV 38851 40216 HC_gene_8322 6 - 38857 40216 -chrXV 40680 43116 MC_gene_8323 1 - 40680 43116 -chrXV 42495 43339 MC_gene_8324 1 - 42495 43339 -chrXV 43424 44714 MC_gene_8325 2 - 43432 44714 -chrXV 45596 47618 HC_gene_8326 13 - 45647 47618 -chrXV 47675 48665 HC_gene_8327 91 - 47785 48665 -chrXV 49388 52839 HC_gene_8328 98 - 49436 52839 -chrXV 52970 54427 LC_gene_8329 1 - 52970 54427 -chrXV 54427 55148 HC_gene_8330 511 - 54521 55148 -chrXV 57851 60096 LC_gene_8331 1 - 57851 60096 -chrXV 60236 61084 HC_gene_8332 879 - 60293 61084 -chrXV 61219 65380 HC_gene_8333 3 - 61279 65380 -chrXV 67090 68976 HC_gene_8334 209 - 67090 68976 -chrXV 69096 70056 HC_gene_8335 23 - 69212 70056 -chrXV 71543 72302 HC_gene_8336 4 - 71543 72302 -chrXV 73398 73897 HC_gene_8337 3 - 73444 73897 -chrXV 77262 77762 MC_gene_8338 1 - 77262 77762 -chrXV 77977 78407 HC_gene_8339 15 - 78143 78407 -chrXV 78681 79812 MC_gene_8340 1 - 79490 79812 -chrXV 81241 83098 MC_gene_8341 5 - 81377 83098 -chrXV 83727 84395 LC_gene_8342 1 - 83727 84395 -chrXV 85087 86785 HC_gene_8343 89 - 85202 86785 -chrXV 89491 91669 HC_gene_8344 29 - 89491 91669 -chrXV 91689 92871 HC_gene_8345 1982 - 91938 92871 -chrXV 92932 94420 HC_gene_8346 4774 - 93303 94420 -chrXV 94635 96430 HC_gene_8347 93 - 94706 96430 -chrXV 96597 97383 MC_gene_8348 1 - 96597 97383 -chrXV 99888 100581 LC_gene_8349 1 - 99888 100581 -chrXV 100760 101432 HC_gene_8350 10 - 100818 101432 -chrXV 103268 103943 HC_gene_8351 10 - 103274 103943 -chrXV 104813 106052 LC_gene_8352 1 - 104813 106052 -chrXV 106052 106716 MC_gene_8353 1 - 106278 106716 -chrXV 107995 108946 HC_gene_8354 192 - 108083 108946 -chrXV 111089 111891 HC_gene_8355 89 - 111208 111891 -chrXV 113988 116085 HC_gene_8356 20 - 114003 116085 -chrXV 115930 117518 MC_gene_8357 1 - 115930 117518 -chrXV 115990 117976 MC_gene_8358 1 - 115990 117976 -chrXV 122866 123836 MC_gene_8359 1 - 122866 123836 -chrXV 125886 126708 HC_gene_8360 69 - 125886 126708 -chrXV 126820 128318 HC_gene_8361 79 - 126905 128318 -chrXV 130676 131618 LC_gene_8362 1 - 130676 131618 -chrXV 132433 135903 HC_gene_8363 35 - 132460 135903 -chrXV 136370 137851 HC_gene_8364 287 - 136416 137851 -chrXV 137970 139075 HC_gene_8365 44 - 137987 139075 -chrXV 139151 141381 HC_gene_8366 4 - 139158 141381 -chrXV 141352 142613 HC_gene_8367 38 - 141352 142613 -chrXV 142598 143985 LC_gene_8368 1 - 142598 143985 -chrXV 145074 146154 LC_gene_8369 1 - 145074 146154 -chrXV 150259 153524 HC_gene_8370 7 - 150295 153524 -chrXV 153559 154768 HC_gene_8371 77 - 153559 154768 -chrXV 154993 158913 HC_gene_8372 36 - 154993 158913 -chrXV 159022 160633 HC_gene_8373 17982 - 159454 160633 -chrXV 167357 167860 HC_gene_8374 4 - 167569 167860 -chrXV 167968 168893 LC_gene_8375 1 - 167968 168893 -chrXV 169449 170001 MC_gene_8376 1 - 169449 170001 -chrXV 169958 170937 MC_gene_8377 1 - 169958 170937 -chrXV 175420 175837 LC_gene_8378 1 - 175420 175837 -chrXV 180188 181472 HC_gene_8379 68 - 180280 181472 -chrXV 185060 185534 LC_gene_8380 1 - 185106 185534 -chrXV 185534 186732 HC_gene_8381 308 - 185584 186732 -chrXV 189211 193626 HC_gene_8382 6 - 189211 193626 -chrXV 193700 194834 HC_gene_8383 33 - 193778 194834 -chrXV 196887 198754 HC_gene_8384 39 - 196960 198754 -chrXV 199824 202569 HC_gene_8385 74 - 200112 202569 -chrXV 202591 204523 HC_gene_8386 24 - 202628 204523 -chrXV 204660 205918 HC_gene_8387 19 - 204660 205918 -chrXV 205973 207198 HC_gene_8388 182 - 206001 207198 -chrXV 207238 210339 HC_gene_8389 4 - 207338 210339 -chrXV 210359 212006 HC_gene_8390 106 - 210439 212006 -chrXV 213689 216982 HC_gene_8391 29 - 213731 216982 -chrXV 217017 218457 LC_gene_8392 1 - 217017 218457 -chrXV 218464 218687 MC_gene_8393 1 - 218506 218687 -chrXV 219086 220559 HC_gene_8394 6 - 219139 220559 -chrXV 224308 226123 HC_gene_8395 11 - 224320 226123 -chrXV 226077 226490 HC_gene_8396 4 - 226077 226490 -chrXV 227092 227628 LC_gene_8397 1 - 227092 227628 -chrXV 227869 228406 LC_gene_8398 1 - 227869 228406 -chrXV 231286 231925 HC_gene_8399 261 - 231286 231925 -chrXV 231848 233651 HC_gene_8400 70 - 231848 233651 -chrXV 233746 234114 MC_gene_8401 1 - 233746 234114 -chrXV 234762 237591 LC_gene_8402 1 - 234762 237591 -chrXV 240056 241359 HC_gene_8403 59 - 240061 241359 -chrXV 241507 242756 MC_gene_8404 1 - 241507 242756 -chrXV 247467 247855 LC_gene_8405 1 - 247467 247855 -chrXV 248229 249618 HC_gene_8406 29 - 248284 249618 -chrXV 250149 250579 MC_gene_8407 1 - 250170 250579 -chrXV 251043 252694 HC_gene_8408 88 - 251106 252694 -chrXV 252739 253615 HC_gene_8409 5729 - 253023 253615 -chrXV 254594 255086 HC_gene_8410 30 - 254706 255086 -chrXV 256076 256583 LC_gene_8411 1 - 256076 256583 -chrXV 259015 259645 MC_gene_8412 1 - 259015 259645 -chrXV 263765 264347 LC_gene_8413 1 - 263765 264347 -chrXV 266119 267582 HC_gene_8414 20 - 266120 267582 -chrXV 267625 267924 MC_gene_8415 1 - 267777 267924 -chrXV 269539 271588 HC_gene_8416 13 - 269715 271588 -chrXV 271629 273728 HC_gene_8417 88 - 271804 273728 -chrXV 273816 274370 HC_gene_8418 185 - 273918 274370 -chrXV 277743 278149 LC_gene_8419 1 - 277743 278149 -chrXV 279964 281529 HC_gene_8420 114 - 280166 281529 -chrXV 282240 285480 HC_gene_8421 31 - 282301 285480 -chrXV 285533 286070 LC_gene_8422 1 - 285606 286070 -chrXV 290623 292123 HC_gene_8423 75 - 290694 292123 -chrXV 292586 294150 LC_gene_8424 1 - 292586 294150 -chrXV 294664 296143 HC_gene_8425 110 - 294706 296143 -chrXV 296388 296758 MC_gene_8426 1 - 296388 296758 -chrXV 297748 299145 LC_gene_8427 1 - 297748 299145 -chrXV 299406 300231 MC_gene_8428 1 - 299406 300231 -chrXV 300148 300461 MC_gene_8429 1 - 300148 300461 -chrXV 301231 303194 HC_gene_8430 15 - 301259 303194 -chrXV 303238 304361 HC_gene_8431 280 - 303416 304361 -chrXV 307285 307675 MC_gene_8432 1 - 307285 307675 -chrXV 309065 310335 HC_gene_8433 12 - 309067 310335 -chrXV 310670 312453 HC_gene_8434 54 - 310827 312453 -chrXV 312658 315514 HC_gene_8435 50 - 312945 315514 -chrXV 315631 316462 HC_gene_8436 333 - 315760 316462 -chrXV 321677 323003 HC_gene_8437 33 - 321753 323003 -chrXV 323146 324637 HC_gene_8438 151 - 323342 324637 -chrXV 324645 325699 MC_gene_8439 1 - 324645 325699 -chrXV 326043 326455 HC_gene_8440 68 - 326165 326455 -chrXV 328939 329147 MC_gene_8441 1 - 328939 329147 -chrXV 331148 331624 HC_gene_8442 4 - 331148 331624 -chrXV 332278 333353 HC_gene_8443 2 - 332278 333353 -chrXV 334396 336426 HC_gene_8444 16 - 334397 336426 -chrXV 337539 340032 HC_gene_8445 1117 - 337590 340032 -chrXV 340949 342632 HC_gene_8446 93 - 340961 342632 -chrXV 342977 343375 MC_gene_8447 1 - 342998 343375 -chrXV 346126 348141 HC_gene_8448 23 - 346126 348141 -chrXV 348901 349630 HC_gene_8449 38 - 348984 349630 -chrXV 353855 354108 MC_gene_8450 1 - 353855 354108 -chrXV 355270 355808 MC_gene_8451 1 - 355270 355808 -chrXV 356139 357204 HC_gene_8452 19 - 356144 357204 -chrXV 360165 361139 HC_gene_8453 113 - 360182 361139 -chrXV 363455 364002 MC_gene_8454 1 - 363455 364002 -chrXV 363887 366189 MC_gene_8455 1 - 363887 366189 -chrXV 365921 367493 MC_gene_8456 1 - 365921 367493 -chrXV 367007 367660 MC_gene_8457 1 - 367007 367660 -chrXV 368692 369468 HC_gene_8458 7 - 368713 369468 -chrXV 369872 370883 HC_gene_8459 1339 - 370407 370883 -chrXV 371026 371354 HC_gene_8460 33 - 371101 371354 -chrXV 371624 372058 MC_gene_8461 1 - 371624 372058 -chrXV 372251 373464 HC_gene_8462 252 - 372251 373464 -chrXV 373585 375888 HC_gene_8463 9 - 373585 375888 -chrXV 375908 377874 HC_gene_8464 15 - 375957 377874 -chrXV 378073 379031 LC_gene_8465 1 - 378073 379031 -chrXV 380050 380707 MC_gene_8466 1 - 380190 380707 -chrXV 383205 384509 HC_gene_8467 17 - 383205 384509 -chrXV 385727 386375 MC_gene_8468 1 - 385727 386375 -chrXV 389522 391376 MC_gene_8469 2 - 389522 391376 -chrXV 392170 394639 HC_gene_8470 11 - 392346 394639 -chrXV 394701 397341 HC_gene_8471 13 - 394729 397341 -chrXV 397239 400106 HC_gene_8472 11 - 397239 400106 -chrXV 400143 401740 HC_gene_8473 7 - 400143 401740 -chrXV 402555 405440 HC_gene_8474 16 - 402662 405440 -chrXV 406690 408134 HC_gene_8475 129 - 406690 408134 -chrXV 409129 410130 HC_gene_8476 37 - 409605 410130 -chrXV 412154 412486 MC_gene_8477 1 - 412154 412486 -chrXV 413554 414064 MC_gene_8478 1 - 413554 414064 -chrXV 414149 415940 HC_gene_8479 181 - 414377 415940 -chrXV 416164 417821 HC_gene_8480 66 - 416175 417821 -chrXV 418245 421709 HC_gene_8481 36 - 418396 421709 -chrXV 422472 423918 HC_gene_8482 79 - 422472 423918 -chrXV 423999 424549 MC_gene_8483 1 - 424003 424549 -chrXV 424655 426305 HC_gene_8484 232 - 424673 426305 -chrXV 426325 427350 HC_gene_8485 380 - 426336 427350 -chrXV 427561 429999 HC_gene_8486 34 - 427752 429999 -chrXV 430187 431704 HC_gene_8487 121 - 430187 431704 -chrXV 432606 433246 LC_gene_8488 1 - 432606 433246 -chrXV 433320 436486 HC_gene_8489 11 - 433355 436486 -chrXV 436878 437198 HC_gene_8490 2 - 436878 437198 -chrXV 438743 441191 HC_gene_8491 37 - 438846 441191 -chrXV 442603 443713 HC_gene_8492 43 - 442645 443713 -chrXV 445982 446788 HC_gene_8493 15 - 445993 446788 -chrXV 446870 448318 HC_gene_8494 2 - 446872 448318 -chrXV 448451 448778 LC_gene_8495 1 - 448501 448778 -chrXV 448778 449835 MC_gene_8496 1 - 448794 449835 -chrXV 451590 453504 HC_gene_8497 95 - 451649 453504 -chrXV 453666 454956 LC_gene_8498 1 - 453666 454956 -chrXV 455787 457965 HC_gene_8499 12 - 455837 457965 -chrXV 458735 461746 HC_gene_8500 25 - 458736 461746 -chrXV 462199 463394 LC_gene_8501 1 - 462199 463394 -chrXV 463839 464185 MC_gene_8502 1 - 463839 464185 -chrXV 464692 466341 LC_gene_8503 1 - 464692 466341 -chrXV 466440 467622 HC_gene_8504 62 - 466458 467622 -chrXV 469231 471658 HC_gene_8505 8 - 469283 471658 -chrXV 473232 474452 HC_gene_8506 62 - 473323 474452 -chrXV 476683 479243 HC_gene_8507 13 - 476851 479243 -chrXV 479324 479816 MC_gene_8508 1 - 479324 479816 -chrXV 481653 483149 LC_gene_8509 1 - 481728 483149 -chrXV 483114 486977 HC_gene_8510 63 - 483114 486977 -chrXV 489793 490851 HC_gene_8511 327 - 489934 490851 -chrXV 491032 492967 HC_gene_8512 17 - 491038 492967 -chrXV 493587 494465 MC_gene_8513 2 - 493587 494465 -chrXV 494267 495660 MC_gene_8514 1 - 494267 495660 -chrXV 494915 497102 MC_gene_8515 1 - 494915 497102 -chrXV 497430 501031 LC_gene_8516 1 - 497430 501031 -chrXV 501306 502482 HC_gene_8517 4 - 501409 502482 -chrXV 502791 504399 HC_gene_8518 244 - 502852 504399 -chrXV 504807 505420 LC_gene_8519 1 - 504807 505420 -chrXV 505684 506304 LC_gene_8520 1 - 505684 506304 -chrXV 506654 507540 HC_gene_8521 90 - 506747 507540 -chrXV 507664 508498 HC_gene_8522 8 - 507724 508498 -chrXV 507804 511238 HC_gene_8523 8 - 507804 511238 -chrXV 513014 514316 HC_gene_8524 1 - 513014 514316 -chrXV 514939 515645 LC_gene_8525 1 - 514939 515645 -chrXV 516095 517423 HC_gene_8526 355 - 516358 517423 -chrXV 519623 520428 MC_gene_8527 1 - 519623 520428 -chrXV 521210 522650 MC_gene_8528 3 - 521257 522650 -chrXV 524366 524842 LC_gene_8529 1 - 524366 524842 -chrXV 528771 529313 MC_gene_8530 1 - 528771 529313 -chrXV 529922 530282 LC_gene_8531 1 - 529941 530282 -chrXV 530599 531249 MC_gene_8532 1 - 530599 531249 -chrXV 535668 537146 MC_gene_8533 1 - 535668 537146 -chrXV 538289 539517 HC_gene_8534 68 - 538289 539517 -chrXV 539552 541288 MC_gene_8535 1 - 539623 541288 -chrXV 541308 543970 HC_gene_8536 1 - 541731 543970 -chrXV 542416 544360 HC_gene_8537 2 - 542416 544360 -chrXV 547572 550611 HC_gene_8538 62 - 547604 550611 -chrXV 551756 552905 HC_gene_8539 1228 - 552110 552905 -chrXV 552968 554794 HC_gene_8540 204 - 552968 554794 -chrXV 554742 558750 HC_gene_8541 50 - 554742 558750 -chrXV 558784 559776 HC_gene_8542 61 - 558784 559776 -chrXV 559824 560701 HC_gene_8543 60 - 559837 560701 -chrXV 564349 566209 HC_gene_8544 145 - 564397 566209 -chrXV 566677 569637 HC_gene_8545 7 - 566677 569637 -chrXV 569818 570866 HC_gene_8546 102 - 569818 570866 -chrXV 572058 572920 HC_gene_8547 43 - 572124 572920 -chrXV 574272 574782 LC_gene_8548 1 - 574368 574782 -chrXV 577432 577944 MC_gene_8549 1 - 577432 577944 -chrXV 578525 579029 MC_gene_8550 1 - 578525 579029 -chrXV 579049 579698 HC_gene_8551 1 - 579069 579698 -chrXV 581595 586390 HC_gene_8552 58 - 581684 586390 -chrXV 589580 592609 HC_gene_8553 10 - 589648 592609 -chrXV 593908 594405 MC_gene_8554 1 - 594216 594405 -chrXV 594485 595619 MC_gene_8555 2 - 594681 595619 -chrXV 600871 602417 HC_gene_8556 48 - 600871 602417 -chrXV 602537 605094 HC_gene_8557 9 - 602548 605094 -chrXV 605173 606193 HC_gene_8558 287 - 605261 606193 -chrXV 606359 608540 LC_gene_8559 1 - 606359 608540 -chrXV 608561 609220 HC_gene_8560 104 - 608561 609220 -chrXV 609284 611433 HC_gene_8561 15 - 609420 611433 -chrXV 612487 616950 HC_gene_8562 112 - 612487 616950 -chrXV 617092 619060 HC_gene_8563 140 - 617133 619060 -chrXV 626469 628002 HC_gene_8564 60 - 626539 628002 -chrXV 628086 630618 HC_gene_8565 7 - 628105 630618 -chrXV 630727 631817 HC_gene_8566 478 - 630826 631817 -chrXV 632466 633611 HC_gene_8567 236 - 632466 633611 -chrXV 634025 636767 LC_gene_8568 1 - 634025 636767 -chrXV 636767 638623 HC_gene_8569 7 - 636816 638623 -chrXV 638698 642181 HC_gene_8570 1 - 638698 642181 -chrXV 639405 642500 HC_gene_8571 6 - 639405 642500 -chrXV 642994 644353 HC_gene_8572 188 - 643175 644353 -chrXV 646920 648541 HC_gene_8573 24 - 646980 648541 -chrXV 648582 649020 HC_gene_8574 5176 - 648625 649020 -chrXV 651773 653953 HC_gene_8575 28 - 651822 653953 -chrXV 657156 658491 MC_gene_8576 1 - 657156 658491 -chrXV 659409 662151 HC_gene_8577 119 - 659650 662151 -chrXV 662306 662726 MC_gene_8578 1 - 662306 662726 -chrXV 663164 664524 HC_gene_8579 4 - 663635 664524 -chrXV 664955 665535 HC_gene_8580 13 - 664955 665535 -chrXV 665619 666640 MC_gene_8581 1 - 665619 666640 -chrXV 665661 667224 MC_gene_8582 1 - 665661 667224 -chrXV 667518 670593 HC_gene_8583 8 - 667518 670593 -chrXV 671219 672441 HC_gene_8584 41 - 671326 672441 -chrXV 673187 673723 MC_gene_8585 1 - 673187 673723 -chrXV 674066 675677 HC_gene_8586 20 - 674098 675677 -chrXV 675732 677845 LC_gene_8587 1 - 675732 677845 -chrXV 677845 678814 HC_gene_8588 3877 - 677851 678814 -chrXV 679123 680435 LC_gene_8589 1 - 679123 680435 -chrXV 680435 681011 HC_gene_8590 2 - 680566 681011 -chrXV 681401 682165 HC_gene_8591 167 - 681401 682165 -chrXV 682797 683616 MC_gene_8592 1 - 682797 683616 -chrXV 684876 685474 LC_gene_8593 1 - 684876 685474 -chrXV 689154 689386 MC_gene_8594 1 - 689154 689386 -chrXV 690085 690349 HC_gene_8595 11 - 690085 690349 -chrXV 690742 692190 HC_gene_8596 1 - 690742 692190 -chrXV 698004 702202 HC_gene_8597 6 - 698004 702202 -chrXV 703557 709772 MC_gene_8598 4 - 703557 709772 -chrXV 711308 712613 HC_gene_8599 233 - 711308 712613 -chrXV 715340 716869 HC_gene_8600 76 - 715373 716869 -chrXV 718280 720245 HC_gene_8601 392 - 718427 720245 -chrXV 720324 721727 HC_gene_8602 50 - 720335 721727 -chrXV 721807 722604 LC_gene_8603 1 - 721807 722604 -chrXV 725330 727243 HC_gene_8604 11 - 725440 727243 -chrXV 729610 733497 HC_gene_8605 26 - 729833 733497 -chrXV 736222 737878 HC_gene_8606 245 - 736295 737878 -chrXV 738729 741772 HC_gene_8607 10 - 738816 741772 -chrXV 741803 742635 MC_gene_8608 1 - 742034 742635 -chrXV 744012 745379 HC_gene_8609 24 - 744043 745379 -chrXV 745508 746144 LC_gene_8610 1 - 745508 746144 -chrXV 746405 749039 HC_gene_8611 187 - 746405 749039 -chrXV 751771 755066 HC_gene_8612 27 - 751870 755066 -chrXV 756185 757620 HC_gene_8613 113 - 756302 757620 -chrXV 758465 758932 LC_gene_8614 1 - 758465 758932 -chrXV 758932 759530 HC_gene_8615 67 - 759236 759530 -chrXV 760450 761286 HC_gene_8616 407 - 760681 761286 -chrXV 761339 762105 HC_gene_8617 130 - 761476 762105 -chrXV 766630 767998 HC_gene_8618 43 - 766630 767998 -chrXV 768997 769898 LC_gene_8619 1 - 769521 769898 -chrXV 769898 770330 HC_gene_8620 4 - 769910 770330 -chrXV 770699 772206 MC_gene_8621 1 - 770699 772206 -chrXV 772206 772429 MC_gene_8622 1 - 772234 772429 -chrXV 775025 775683 LC_gene_8623 1 - 775386 775683 -chrXV 778123 779424 HC_gene_8624 498 - 778442 779424 -chrXV 779984 781551 MC_gene_8625 1 - 779984 781551 -chrXV 783264 784401 HC_gene_8626 2 - 783264 784401 -chrXV 785991 786924 MC_gene_8627 1 - 785991 786924 -chrXV 788780 789826 MC_gene_8628 1 - 788780 789826 -chrXV 789894 792281 HC_gene_8629 96 - 789920 792281 -chrXV 793958 796854 HC_gene_8630 44 - 793958 796854 -chrXV 795705 796855 HC_gene_8631 153 - 795705 796855 -chrXV 797048 798386 LC_gene_8632 1 - 797048 798386 -chrXV 798515 800742 HC_gene_8633 7 - 798515 800742 -chrXV 800895 802351 HC_gene_8634 22 - 800943 802351 -chrXV 802407 803488 HC_gene_8635 117 - 802453 803488 -chrXV 803983 804875 MC_gene_8636 1 - 804200 804875 -chrXV 804875 807044 HC_gene_8637 120 - 804911 807044 -chrXV 808182 810848 HC_gene_8638 20 - 808182 810848 -chrXV 811444 811841 HC_gene_8639 3 - 811444 811841 -chrXV 811864 813738 HC_gene_8640 188 - 811954 813738 -chrXV 815603 817049 HC_gene_8641 291 - 815690 817049 -chrXV 817738 818285 LC_gene_8642 1 - 818032 818285 -chrXV 820264 820746 LC_gene_8643 1 - 820264 820746 -chrXV 820926 821339 HC_gene_8644 3 - 820926 821339 -chrXV 822301 825432 HC_gene_8645 119 - 822389 825432 -chrXV 826648 830736 HC_gene_8646 337 - 826648 830736 -chrXV 830872 832112 HC_gene_8647 182 - 830922 832112 -chrXV 833654 834090 LC_gene_8648 1 - 833654 834090 -chrXV 834169 836516 MC_gene_8649 7 - 834182 836516 -chrXV 836250 836630 MC_gene_8650 1 - 836250 836630 -chrXV 836350 837039 MC_gene_8651 1 - 836350 837039 -chrXV 837598 838148 HC_gene_8652 14 - 837598 838148 -chrXV 838945 841078 HC_gene_8653 13 - 838945 841078 -chrXV 841280 842183 HC_gene_8654 97 - 841280 842183 -chrXV 843445 844754 HC_gene_8655 29 - 843623 844754 -chrXV 844790 845804 HC_gene_8656 98 - 844794 845804 -chrXV 846032 847158 HC_gene_8657 203 - 846173 847158 -chrXV 848874 850059 HC_gene_8658 11 - 848874 850059 -chrXV 850644 851872 HC_gene_8659 75 - 850856 851872 -chrXV 851939 853902 HC_gene_8660 34 - 852035 853902 -chrXV 853041 854032 HC_gene_8661 3 - 853041 854032 -chrXV 854477 854786 LC_gene_8662 1 - 854477 854786 -chrXV 855006 856753 HC_gene_8663 9 - 855077 856753 -chrXV 865563 866547 HC_gene_8664 40 - 865573 866547 -chrXV 867656 868340 LC_gene_8665 1 - 867921 868340 -chrXV 868745 869597 HC_gene_8666 8 - 868989 869597 -chrXV 870125 870687 LC_gene_8667 1 - 870125 870687 -chrXV 873976 875348 HC_gene_8668 34 - 873976 875348 -chrXV 876390 877730 HC_gene_8669 847 - 876390 877730 -chrXV 880139 880489 LC_gene_8670 1 - 880139 880489 -chrXV 881073 881950 MC_gene_8671 1 - 881073 881950 -chrXV 882665 884112 MC_gene_8672 1 - 882665 884112 -chrXV 887884 888752 HC_gene_8673 93 - 887891 888752 -chrXV 889761 891544 HC_gene_8674 58 - 889761 891544 -chrXV 891549 892259 HC_gene_8675 1 - 891549 892259 -chrXV 892452 896489 HC_gene_8676 35 - 892624 896489 -chrXV 896509 898388 HC_gene_8677 660 - 896561 898388 -chrXV 898687 899986 HC_gene_8678 81 - 898845 899986 -chrXV 900015 901221 HC_gene_8679 3380 - 900149 901221 -chrXV 901640 903277 HC_gene_8680 3 - 901640 903277 -chrXV 904496 905543 LC_gene_8681 1 - 904496 905543 -chrXV 906087 908204 HC_gene_8682 32 - 906091 908204 -chrXV 908798 911662 HC_gene_8683 1 - 908798 911662 -chrXV 911628 912515 HC_gene_8684 10 - 911628 912515 -chrXV 913317 915202 HC_gene_8685 43 - 913523 915202 -chrXV 918318 921315 HC_gene_8686 26 - 918445 921315 -chrXV 921056 922925 HC_gene_8687 287 - 921056 922925 -chrXV 922976 925185 HC_gene_8688 4 - 923094 925185 -chrXV 929874 930219 LC_gene_8689 1 - 929874 930219 -chrXV 930529 931164 HC_gene_8690 605 - 930593 931164 -chrXV 936626 939418 HC_gene_8691 31 - 936626 939418 -chrXV 939502 940014 MC_gene_8692 1 - 939546 940014 -chrXV 939550 940180 MC_gene_8693 1 - 939550 940180 -chrXV 940200 940954 MC_gene_8694 1 - 940331 940954 -chrXV 943891 944362 LC_gene_8695 1 - 943891 944362 -chrXV 945913 949216 HC_gene_8696 322 - 946004 949216 -chrXV 952264 953675 LC_gene_8697 1 - 952264 953675 -chrXV 956803 957689 LC_gene_8698 1 - 956803 957689 -chrXV 958122 960201 HC_gene_8699 188 - 958138 960201 -chrXV 966359 968893 HC_gene_8700 222 - 966506 968893 -chrXV 969087 969487 HC_gene_8701 1 - 969087 969487 -chrXV 969171 970034 HC_gene_8702 16 - 969171 970034 -chrXV 970532 971249 LC_gene_8703 1 - 970532 971249 -chrXV 976470 978202 HC_gene_8704 372 - 976562 978202 -chrXV 980789 981472 HC_gene_8705 67 - 980866 981472 -chrXV 984133 986479 HC_gene_8706 14 - 984133 986479 -chrXV 986719 988801 HC_gene_8707 2 - 986719 988801 -chrXV 988868 989450 MC_gene_8708 1 - 988868 989450 -chrXV 991582 992591 MC_gene_8709 1 - 991582 992591 -chrXV 992745 994892 HC_gene_8710 4 - 992793 994892 -chrXV 998299 1000843 HC_gene_8711 12 - 998303 1000843 -chrXV 1001001 1003248 HC_gene_8712 27 - 1001012 1003248 -chrXV 1003480 1004164 HC_gene_8713 4 - 1003545 1004164 -chrXV 1006788 1007975 LC_gene_8714 1 - 1006788 1007975 -chrXV 1008961 1009730 HC_gene_8715 117 - 1008981 1009730 -chrXV 1010331 1010827 LC_gene_8716 1 - 1010377 1010827 -chrXV 1013035 1015054 HC_gene_8717 55 - 1013112 1015054 -chrXV 1015117 1017571 HC_gene_8718 235 - 1015272 1017571 -chrXV 1017514 1018790 HC_gene_8719 355 - 1017514 1018790 -chrXV 1019283 1019795 MC_gene_8720 1 - 1019283 1019795 -chrXV 1019795 1023236 HC_gene_8721 3 - 1019878 1023236 -chrXV 1023316 1023658 MC_gene_8722 1 - 1023391 1023658 -chrXV 1026433 1026972 HC_gene_8723 1 - 1026641 1026972 -chrXV 1027461 1028694 HC_gene_8724 6238 - 1028080 1028694 -chrXV 1028764 1031471 HC_gene_8725 85 - 1029002 1031471 -chrXV 1033366 1036542 HC_gene_8726 22 - 1034426 1036542 -chrXV 1037498 1039410 MC_gene_8727 1 - 1037498 1039410 -chrXV 1039376 1040626 MC_gene_8728 1 - 1039376 1040626 -chrXV 1041196 1043178 HC_gene_8729 264 - 1041468 1043178 -chrXV 1045387 1046066 MC_gene_8730 1 - 1045404 1046066 -chrXV 1047897 1049770 HC_gene_8731 1 - 1047897 1049770 -chrXV 1048020 1050860 HC_gene_8732 2 - 1048020 1050860 -chrXV 1051031 1051729 MC_gene_8733 1 - 1051031 1051729 -chrXV 1054516 1054929 HC_gene_8734 1 - 1054516 1054929 -chrXV 1057624 1058559 MC_gene_8735 1 - 1057624 1058559 -chrXV 1059170 1059857 LC_gene_8736 1 - 1059170 1059857 -chrXV 1059998 1063156 HC_gene_8737 378 - 1059998 1063156 -chrXV 1063511 1064401 HC_gene_8738 2 - 1063937 1064401 -chrXV 1066503 1066987 LC_gene_8739 1 - 1066503 1066987 -chrXV 1070227 1070904 HC_gene_8740 3 - 1070227 1070904 -chrXV 1071594 1072961 LC_gene_8741 1 - 1071594 1072961 -chrXV 1074093 1074851 MC_gene_8742 1 - 1074093 1074851 -chrXV 1076147 1076499 LC_gene_8743 1 - 1076147 1076499 -chrXV 1076680 1078066 LC_gene_8744 1 - 1076680 1078066 -chrXV 1078245 1079544 LC_gene_8745 1 - 1078245 1079544 -chrXV 1084256 1086619 LC_gene_8746 1 - 1084256 1086619 -chrXVI 11590 12881 LC_gene_8747 1 + 11590 12881 -chrXVI 13062 13602 LC_gene_8748 1 + 13062 13602 -chrXVI 14657 14945 LC_gene_8749 1 + 14657 14945 -chrXVI 17206 19248 LC_gene_8750 1 + 17206 19248 -chrXVI 22215 24909 HC_gene_8751 17 + 22215 24766 -chrXVI 25012 26447 HC_gene_8752 395 + 25012 26169 -chrXVI 28587 29266 MC_gene_8753 1 + 28587 29266 -chrXVI 29339 29971 MC_gene_8754 1 + 29339 29967 -chrXVI 30056 30434 HC_gene_8755 971 + 30056 30396 -chrXVI 31225 32979 HC_gene_8756 26 + 31225 32904 -chrXVI 33008 35099 HC_gene_8757 15 + 33008 35089 -chrXVI 35203 37941 HC_gene_8758 9 + 35203 37865 -chrXVI 38152 38913 HC_gene_8759 55 + 38152 38866 -chrXVI 39072 40265 HC_gene_8760 113 + 39072 40152 -chrXVI 40931 43266 HC_gene_8761 62 + 40931 43185 -chrXVI 43266 44563 LC_gene_8762 1 + 43266 44563 -chrXVI 46707 49064 HC_gene_8763 163 + 46707 49064 -chrXVI 49211 51157 HC_gene_8764 94 + 49211 51135 -chrXVI 52922 53500 HC_gene_8765 12 + 52922 53500 -chrXVI 55593 56760 MC_gene_8766 1 + 55593 56760 -chrXVI 59123 62690 MC_gene_8767 1 + 59123 62690 -chrXVI 60170 63106 MC_gene_8768 2 + 60170 63106 -chrXVI 63197 64859 HC_gene_8769 9 + 63197 64859 -chrXVI 66231 66918 MC_gene_8770 1 + 66231 66918 -chrXVI 67671 69119 HC_gene_8771 11 + 67671 69119 -chrXVI 69242 72147 HC_gene_8772 43 + 69242 72147 -chrXVI 72593 73372 MC_gene_8773 1 + 72593 73372 -chrXVI 74035 74860 MC_gene_8774 1 + 74035 74838 -chrXVI 75177 75744 HC_gene_8775 48 + 75177 75592 -chrXVI 76696 79864 MC_gene_8776 5 + 76696 79864 -chrXVI 79573 81400 MC_gene_8777 3 + 79573 81400 -chrXVI 81480 82629 MC_gene_8778 1 + 81480 82629 -chrXVI 84474 87039 HC_gene_8779 54 + 84474 87012 -chrXVI 88425 90532 HC_gene_8780 69 + 88425 90532 -chrXVI 95427 96667 HC_gene_8781 8 + 95427 96499 -chrXVI 99197 100383 HC_gene_8782 234 + 99197 100312 -chrXVI 100462 101805 HC_gene_8783 709 + 100462 101470 -chrXVI 103134 104919 HC_gene_8784 119 + 103134 104919 -chrXVI 104962 105560 HC_gene_8785 4 + 104962 105560 -chrXVI 105675 106085 HC_gene_8786 8 + 105675 106010 -chrXVI 106140 106953 HC_gene_8787 11 + 106140 106882 -chrXVI 107110 108383 HC_gene_8788 161 + 107110 108344 -chrXVI 108613 114671 HC_gene_8789 301 + 108613 114594 -chrXVI 115173 116594 HC_gene_8790 27 + 115173 116594 -chrXVI 117046 118100 HC_gene_8791 61 + 117046 117969 -chrXVI 118253 120271 HC_gene_8792 51 + 118253 120239 -chrXVI 121466 121919 HC_gene_8793 3 + 121466 121760 -chrXVI 123205 125764 HC_gene_8794 69 + 123205 125696 -chrXVI 125973 126743 HC_gene_8795 696 + 125973 126576 -chrXVI 128064 128563 MC_gene_8796 1 + 128064 128563 -chrXVI 128235 129284 MC_gene_8797 1 + 128235 129284 -chrXVI 128464 129666 MC_gene_8798 1 + 128464 129666 -chrXVI 130128 132320 HC_gene_8799 5 + 130128 132320 -chrXVI 132604 135725 HC_gene_8800 94 + 132604 135602 -chrXVI 135776 136616 HC_gene_8801 2374 + 135776 136535 -chrXVI 136681 138437 HC_gene_8802 16 + 136681 138320 -chrXVI 138635 139717 HC_gene_8803 685 + 138635 139541 -chrXVI 143389 144616 HC_gene_8804 7 + 143389 144596 -chrXVI 145927 146550 MC_gene_8805 1 + 145927 146550 -chrXVI 146705 147355 HC_gene_8806 3 + 146705 147339 -chrXVI 147383 148856 HC_gene_8807 84 + 147383 148604 -chrXVI 149235 150367 MC_gene_8808 1 + 149235 150367 -chrXVI 150565 151581 HC_gene_8809 44 + 150565 151465 -chrXVI 153452 154479 HC_gene_8810 255 + 153452 154226 -chrXVI 157826 159793 HC_gene_8811 18 + 157826 159689 -chrXVI 159834 162522 HC_gene_8812 33 + 159834 162455 -chrXVI 162605 163755 LC_gene_8813 1 + 162605 163755 -chrXVI 163891 166010 HC_gene_8814 133 + 163891 165910 -chrXVI 166089 167729 HC_gene_8815 48 + 166089 167729 -chrXVI 169775 170425 LC_gene_8816 1 + 169775 170353 -chrXVI 170918 171944 LC_gene_8817 1 + 170918 171944 -chrXVI 172302 173069 MC_gene_8818 1 + 172302 173069 -chrXVI 173117 174944 HC_gene_8819 215 + 173117 174797 -chrXVI 175001 176042 HC_gene_8820 63 + 175001 175990 -chrXVI 176204 178038 HC_gene_8821 1 + 176204 177981 -chrXVI 178098 179179 HC_gene_8822 59 + 178098 179129 -chrXVI 179222 181350 HC_gene_8823 9 + 179222 181350 -chrXVI 181359 183183 HC_gene_8824 17 + 181359 183181 -chrXVI 183769 184046 MC_gene_8825 1 + 183769 184046 -chrXVI 184911 185115 MC_gene_8826 1 + 184911 185115 -chrXVI 188108 188810 MC_gene_8827 1 + 188108 188749 -chrXVI 189040 191107 MC_gene_8828 1 + 189040 191107 -chrXVI 191388 192943 HC_gene_8829 54 + 191388 192914 -chrXVI 195212 195994 HC_gene_8830 5 + 195212 195994 -chrXVI 198015 198928 HC_gene_8831 1 + 198015 198928 -chrXVI 199017 199739 HC_gene_8832 171 + 199017 199549 -chrXVI 202928 203438 HC_gene_8833 1 + 202928 203438 -chrXVI 203172 205160 HC_gene_8834 75 + 203172 205051 -chrXVI 205200 207899 HC_gene_8835 9 + 205200 207815 -chrXVI 207986 210188 HC_gene_8836 85 + 207986 210050 -chrXVI 210863 211244 HC_gene_8837 6 + 210863 211244 -chrXVI 211297 211873 HC_gene_8838 11 + 211297 211873 -chrXVI 212096 213119 HC_gene_8839 240 + 212096 212933 -chrXVI 215661 216034 HC_gene_8840 2 + 215661 216034 -chrXVI 218577 220566 HC_gene_8841 8 + 218577 220566 -chrXVI 223100 224202 HC_gene_8842 53 + 223100 224202 -chrXVI 224149 226190 LC_gene_8843 1 + 224149 226190 -chrXVI 228274 229271 HC_gene_8844 190 + 228274 228967 -chrXVI 231070 232604 HC_gene_8845 20 + 231070 232574 -chrXVI 237305 239167 HC_gene_8846 8 + 237305 239167 -chrXVI 239398 239964 LC_gene_8847 1 + 239398 239964 -chrXVI 241763 242710 LC_gene_8848 1 + 241763 242710 -chrXVI 243155 244359 HC_gene_8849 4 + 243155 244324 -chrXVI 246922 250753 HC_gene_8850 468 + 246922 250677 -chrXVI 252098 252675 LC_gene_8851 1 + 252098 252675 -chrXVI 253561 254497 LC_gene_8852 1 + 253561 254497 -chrXVI 254693 256898 HC_gene_8853 85 + 254693 256898 -chrXVI 257522 258082 LC_gene_8854 1 + 257522 258082 -chrXVI 259687 260972 LC_gene_8855 1 + 259687 260972 -chrXVI 264964 266282 HC_gene_8856 27 + 264964 266262 -chrXVI 267774 271063 HC_gene_8857 4 + 267774 271063 -chrXVI 271248 272620 HC_gene_8858 56 + 271248 272398 -chrXVI 274752 275982 HC_gene_8859 9 + 274752 275982 -chrXVI 280266 280909 HC_gene_8860 39 + 280266 280909 -chrXVI 280452 281214 HC_gene_8861 41 + 280452 281063 -chrXVI 282089 283255 HC_gene_8862 3967 + 282089 283020 -chrXVI 283255 285539 LC_gene_8863 1 + 283255 285539 -chrXVI 286629 287400 HC_gene_8864 5 + 286629 287400 -chrXVI 289403 289621 MC_gene_8865 1 + 289403 289621 -chrXVI 289658 291360 LC_gene_8866 1 + 289658 291360 -chrXVI 296993 298665 HC_gene_8867 451 + 296993 298583 -chrXVI 299809 300339 LC_gene_8868 1 + 299809 300339 -chrXVI 301588 303058 HC_gene_8869 46 + 301588 303058 -chrXVI 303100 304457 HC_gene_8870 4220 + 303100 304319 -chrXVI 305239 306358 HC_gene_8871 198 + 305239 306246 -chrXVI 306460 308565 LC_gene_8872 1 + 306460 308565 -chrXVI 308602 309760 MC_gene_8873 1 + 308602 309760 -chrXVI 310172 313181 HC_gene_8874 52 + 310172 313011 -chrXVI 313257 316590 HC_gene_8875 11 + 313257 316559 -chrXVI 316726 317658 HC_gene_8876 35 + 316726 317617 -chrXVI 318981 319276 HC_gene_8877 1 + 318981 319243 -chrXVI 320984 321829 LC_gene_8878 1 + 320984 321829 -chrXVI 322053 323988 HC_gene_8879 6 + 322053 323988 -chrXVI 324156 324930 MC_gene_8880 1 + 324156 324928 -chrXVI 326540 327852 HC_gene_8881 116 + 326540 327762 -chrXVI 329470 331865 MC_gene_8882 1 + 329470 331831 -chrXVI 335936 337513 HC_gene_8883 5 + 335936 337473 -chrXVI 338817 339270 LC_gene_8884 1 + 338817 339270 -chrXVI 339896 341341 HC_gene_8885 77 + 339896 341070 -chrXVI 342960 343507 LC_gene_8886 1 + 342960 343505 -chrXVI 345546 347395 LC_gene_8887 1 + 345546 347395 -chrXVI 347656 348098 LC_gene_8888 1 + 347656 348067 -chrXVI 348459 349145 HC_gene_8889 39 + 348459 349145 -chrXVI 349074 350145 HC_gene_8890 43 + 349074 350075 -chrXVI 352617 353151 HC_gene_8891 7 + 352617 352805 -chrXVI 355653 357925 HC_gene_8892 12 + 355653 357925 -chrXVI 359282 359691 MC_gene_8893 1 + 359282 359691 -chrXVI 360168 361747 HC_gene_8894 37 + 360168 361700 -chrXVI 361817 363642 HC_gene_8895 31 + 361817 363417 -chrXVI 363867 364399 HC_gene_8896 3 + 363867 364399 -chrXVI 364930 366636 HC_gene_8897 13 + 364930 366541 -chrXVI 366909 368166 HC_gene_8898 47 + 366909 368124 -chrXVI 368795 369888 HC_gene_8899 9 + 368795 369860 -chrXVI 370914 373404 HC_gene_8900 172 + 370914 373163 -chrXVI 373638 375560 HC_gene_8901 70 + 373638 375560 -chrXVI 375500 377183 HC_gene_8902 135 + 375500 377183 -chrXVI 379635 381286 HC_gene_8903 1 + 379635 381286 -chrXVI 381324 383082 HC_gene_8904 211 + 381324 383078 -chrXVI 383321 384592 HC_gene_8905 81 + 383321 384515 -chrXVI 389532 393883 HC_gene_8906 21 + 389532 393766 -chrXVI 393995 396805 HC_gene_8907 8 + 393995 396723 -chrXVI 404919 406574 HC_gene_8908 130 + 404919 406244 -chrXVI 406608 408047 HC_gene_8909 2268 + 406608 407650 -chrXVI 409076 410701 HC_gene_8910 1 + 409076 410701 -chrXVI 410295 412056 HC_gene_8911 10 + 410295 412056 -chrXVI 412180 415688 HC_gene_8912 38 + 412180 415584 -chrXVI 415732 418172 HC_gene_8913 13 + 415732 418166 -chrXVI 418317 420060 HC_gene_8914 12 + 418317 420060 -chrXVI 420742 423034 HC_gene_8915 18 + 420742 422972 -chrXVI 425756 427857 HC_gene_8916 82 + 425756 427857 -chrXVI 427925 428721 HC_gene_8917 31 + 427925 428713 -chrXVI 429813 431635 HC_gene_8918 95 + 429813 431514 -chrXVI 432542 434232 HC_gene_8919 916 + 432542 434205 -chrXVI 434282 435884 HC_gene_8920 8 + 434282 435794 -chrXVI 436233 436709 MC_gene_8921 1 + 436233 436709 -chrXVI 442652 443334 MC_gene_8922 1 + 442652 443334 -chrXVI 442786 443538 MC_gene_8923 1 + 442786 443538 -chrXVI 443761 444362 HC_gene_8924 8 + 443761 444360 -chrXVI 444517 445371 HC_gene_8925 162 + 444517 445208 -chrXVI 445371 445760 LC_gene_8926 1 + 445371 445760 -chrXVI 451169 451561 LC_gene_8927 1 + 451169 451561 -chrXVI 451577 452256 MC_gene_8928 1 + 451577 452156 -chrXVI 453401 454237 HC_gene_8929 21 + 453401 454155 -chrXVI 454418 455433 LC_gene_8930 1 + 454418 455433 -chrXVI 455663 456483 HC_gene_8931 1 + 455663 456483 -chrXVI 456257 457032 HC_gene_8932 2 + 456257 457032 -chrXVI 458740 459917 HC_gene_8933 43 + 458740 459917 -chrXVI 459955 460840 HC_gene_8934 43 + 459955 460705 -chrXVI 462400 462646 MC_gene_8935 1 + 462400 462639 -chrXVI 464363 465863 HC_gene_8936 490 + 464363 465863 -chrXVI 465874 466749 HC_gene_8937 120 + 465874 466621 -chrXVI 467155 469831 HC_gene_8938 6 + 467155 469817 -chrXVI 469880 472322 HC_gene_8939 153 + 469880 472322 -chrXVI 472237 472987 HC_gene_8940 2 + 472237 472987 -chrXVI 475168 476907 LC_gene_8941 1 + 475168 476907 -chrXVI 479213 480323 HC_gene_8942 57 + 479213 480311 -chrXVI 480496 481277 HC_gene_8943 107 + 480496 481181 -chrXVI 481478 481884 LC_gene_8944 1 + 481478 481884 -chrXVI 482259 483006 HC_gene_8945 13 + 482259 482788 -chrXVI 483894 485561 LC_gene_8946 1 + 483894 485561 -chrXVI 485797 486243 HC_gene_8947 1 + 485797 486243 -chrXVI 486376 487368 HC_gene_8948 47 + 486376 487343 -chrXVI 488484 490095 LC_gene_8949 1 + 488484 490095 -chrXVI 491986 493081 HC_gene_8950 2 + 491986 493050 -chrXVI 493481 495438 HC_gene_8951 17 + 493481 495376 -chrXVI 495485 497851 HC_gene_8952 8 + 495485 497779 -chrXVI 498030 499597 HC_gene_8953 487 + 498030 499393 -chrXVI 500526 501026 LC_gene_8954 1 + 500526 501026 -chrXVI 503209 504430 HC_gene_8955 66 + 503209 504386 -chrXVI 506614 507613 HC_gene_8956 2 + 506614 507500 -chrXVI 508171 510607 HC_gene_8957 15 + 508171 510607 -chrXVI 511851 512335 HC_gene_8958 16 + 511851 512335 -chrXVI 514540 515763 LC_gene_8959 1 + 514540 515763 -chrXVI 517634 519916 HC_gene_8960 6 + 517634 519916 -chrXVI 520702 525083 HC_gene_8961 15 + 520702 525083 -chrXVI 525487 525769 LC_gene_8962 1 + 525487 525769 -chrXVI 526403 527468 MC_gene_8963 1 + 526403 527468 -chrXVI 526857 527476 MC_gene_8964 1 + 526857 527476 -chrXVI 527516 528950 HC_gene_8965 79 + 527516 528948 -chrXVI 529601 533713 HC_gene_8966 70 + 529601 533538 -chrXVI 534951 535953 HC_gene_8967 362 + 534951 535735 -chrXVI 539137 542049 HC_gene_8968 5 + 539137 542049 -chrXVI 544055 544503 HC_gene_8969 8 + 544055 544330 -chrXVI 544602 548208 HC_gene_8970 3 + 544602 548208 -chrXVI 545488 548393 HC_gene_8971 3 + 545488 548359 -chrXVI 548461 550513 HC_gene_8972 12 + 548461 550475 -chrXVI 552006 553427 HC_gene_8973 40 + 552006 553427 -chrXVI 553519 554561 HC_gene_8974 1 + 553519 554561 -chrXVI 554587 555787 HC_gene_8975 37 + 554587 555771 -chrXVI 556352 558022 MC_gene_8976 1 + 556352 558022 -chrXVI 557969 558335 MC_gene_8977 1 + 557969 558335 -chrXVI 558370 560132 HC_gene_8978 7 + 558370 560132 -chrXVI 560409 560772 MC_gene_8979 1 + 560409 560772 -chrXVI 563300 563952 LC_gene_8980 1 + 563300 563952 -chrXVI 564080 564453 MC_gene_8981 1 + 564080 564453 -chrXVI 565347 566170 HC_gene_8982 3 + 565347 566170 -chrXVI 567276 569218 HC_gene_8983 2 + 567276 569218 -chrXVI 570816 571488 MC_gene_8984 1 + 570816 571488 -chrXVI 572479 575322 HC_gene_8985 73 + 572479 575207 -chrXVI 575423 575713 LC_gene_8986 1 + 575423 575713 -chrXVI 576456 577575 HC_gene_8987 92 + 576456 577549 -chrXVI 581559 581995 MC_gene_8988 1 + 581559 581995 -chrXVI 582295 582619 LC_gene_8989 1 + 582295 582619 -chrXVI 583764 584581 HC_gene_8990 3 + 583764 584546 -chrXVI 586546 588245 HC_gene_8991 7 + 586546 588245 -chrXVI 590692 591731 LC_gene_8992 1 + 590692 591731 -chrXVI 591813 592287 LC_gene_8993 1 + 591813 592287 -chrXVI 593405 596601 HC_gene_8994 10 + 593405 596390 -chrXVI 596662 599749 HC_gene_8995 18 + 596662 599694 -chrXVI 599819 600556 HC_gene_8996 319 + 599819 600328 -chrXVI 601862 602302 LC_gene_8997 1 + 601862 602302 -chrXVI 607559 608838 HC_gene_8998 3 + 607559 608838 -chrXVI 610394 613453 HC_gene_8999 52 + 610394 613368 -chrXVI 614766 615339 MC_gene_9000 1 + 614766 615339 -chrXVI 615376 619191 HC_gene_9001 4 + 615376 619191 -chrXVI 620118 621931 HC_gene_9002 30 + 620118 621931 -chrXVI 622871 624589 HC_gene_9003 712 + 622871 624555 -chrXVI 627856 628433 MC_gene_9004 1 + 627856 628433 -chrXVI 628592 631362 HC_gene_9005 13 + 628592 631345 -chrXVI 631487 633888 HC_gene_9006 10 + 631487 633888 -chrXVI 634071 637330 HC_gene_9007 5 + 634071 637328 -chrXVI 639273 641224 HC_gene_9008 52 + 639273 641224 -chrXVI 641238 641543 MC_gene_9009 1 + 641238 641524 -chrXVI 642089 643712 HC_gene_9010 2940 + 642089 643557 -chrXVI 643778 645577 HC_gene_9011 350 + 643778 645366 -chrXVI 645873 646442 HC_gene_9012 2776 + 645873 646423 -chrXVI 646442 646941 LC_gene_9013 1 + 646442 646941 -chrXVI 647297 648546 HC_gene_9014 44 + 647297 648449 -chrXVI 648595 650287 HC_gene_9015 549 + 648595 650059 -chrXVI 654144 655215 HC_gene_9016 5976 + 654144 654923 -chrXVI 655215 655876 LC_gene_9017 1 + 655215 655876 -chrXVI 656777 657407 HC_gene_9018 8 + 656777 657407 -chrXVI 657392 659126 HC_gene_9019 17 + 657392 659126 -chrXVI 659161 661286 HC_gene_9020 13 + 659161 661286 -chrXVI 664922 665918 HC_gene_9021 165 + 664922 665833 -chrXVI 667201 667494 LC_gene_9022 1 + 667201 667494 -chrXVI 667627 670961 HC_gene_9023 6 + 667627 670961 -chrXVI 671088 672448 HC_gene_9024 34 + 671088 672448 -chrXVI 672488 673619 HC_gene_9025 34 + 672488 673553 -chrXVI 673665 674916 HC_gene_9026 84 + 673665 674898 -chrXVI 675724 676373 MC_gene_9027 1 + 675724 676013 -chrXVI 677171 678078 HC_gene_9028 941 + 677171 677757 -chrXVI 678543 679430 MC_gene_9029 1 + 678543 679408 -chrXVI 679527 681173 HC_gene_9030 78 + 679527 681113 -chrXVI 681204 683152 HC_gene_9031 82 + 681204 682980 -chrXVI 683894 684489 MC_gene_9032 1 + 683894 684489 -chrXVI 685635 687984 HC_gene_9033 7 + 685635 687938 -chrXVI 688158 689266 HC_gene_9034 34 + 688158 689227 -chrXVI 689998 692788 HC_gene_9035 90 + 689998 692788 -chrXVI 695381 695688 MC_gene_9036 1 + 695381 695688 -chrXVI 695749 697527 LC_gene_9037 1 + 695749 697426 -chrXVI 697547 698412 HC_gene_9038 8 + 697547 698412 -chrXVI 698779 700119 HC_gene_9039 39 + 698779 700119 -chrXVI 700561 702106 HC_gene_9040 6655 + 700561 702075 -chrXVI 702106 702485 MC_gene_9041 1 + 702106 702368 -chrXVI 703441 704538 MC_gene_9042 1 + 703441 704538 -chrXVI 704828 706764 HC_gene_9043 17 + 704828 706716 -chrXVI 706885 708506 HC_gene_9044 15 + 706885 708476 -chrXVI 708748 709959 MC_gene_9045 1 + 708748 709959 -chrXVI 710055 711562 HC_gene_9046 209 + 710055 711406 -chrXVI 713232 716186 HC_gene_9047 12 + 713232 716160 -chrXVI 719589 721128 HC_gene_9048 82 + 719589 721030 -chrXVI 725156 727210 HC_gene_9049 1 + 725156 727210 -chrXVI 726003 727299 HC_gene_9050 1 + 726003 727296 -chrXVI 727319 728773 HC_gene_9051 11 + 727319 728759 -chrXVI 728990 729606 HC_gene_9052 1 + 728990 729523 -chrXVI 729769 730433 HC_gene_9053 253 + 729769 730301 -chrXVI 730465 731265 HC_gene_9054 120 + 730465 731193 -chrXVI 732262 733609 HC_gene_9055 579 + 732262 733403 -chrXVI 733620 734841 LC_gene_9056 1 + 733620 734841 -chrXVI 740003 741669 HC_gene_9057 45 + 740003 741442 -chrXVI 742373 744001 HC_gene_9058 166 + 742373 743850 -chrXVI 744614 745763 HC_gene_9059 41 + 744614 745699 -chrXVI 747280 749344 HC_gene_9060 7 + 747280 749255 -chrXVI 752230 753223 HC_gene_9061 623 + 752230 753122 -chrXVI 753255 754388 HC_gene_9062 177 + 753255 754371 -chrXVI 755682 758453 HC_gene_9063 3 + 755682 758453 -chrXVI 759801 760542 HC_gene_9064 1 + 759801 760542 -chrXVI 760256 761084 HC_gene_9065 1 + 760256 761028 -chrXVI 764200 765701 MC_gene_9066 1 + 764200 765699 -chrXVI 767714 769063 HC_gene_9067 109 + 767714 769053 -chrXVI 769542 770123 HC_gene_9068 137 + 769542 770074 -chrXVI 771256 773923 HC_gene_9069 10 + 771256 773811 -chrXVI 774432 774691 LC_gene_9070 1 + 774432 774691 -chrXVI 775762 776378 MC_gene_9071 1 + 775762 776378 -chrXVI 777541 780386 HC_gene_9072 1 + 777541 780386 -chrXVI 780474 781069 HC_gene_9073 2 + 780474 781069 -chrXVI 780836 781612 HC_gene_9074 1 + 780836 781465 -chrXVI 781999 785125 HC_gene_9075 6 + 781999 784736 -chrXVI 785451 785989 HC_gene_9076 3 + 785451 785822 -chrXVI 786034 787820 HC_gene_9077 27 + 786034 787659 -chrXVI 787863 789598 HC_gene_9078 79 + 787863 789511 -chrXVI 789892 791277 HC_gene_9079 36 + 789892 791201 -chrXVI 792648 794096 HC_gene_9080 136 + 792648 793822 -chrXVI 794939 796119 HC_gene_9081 5522 + 794939 795909 -chrXVI 796119 796419 LC_gene_9082 1 + 796119 796419 -chrXVI 797522 797972 HC_gene_9083 648 + 797522 797870 -chrXVI 798023 798992 HC_gene_9084 39 + 798023 798991 -chrXVI 799177 802316 HC_gene_9085 17 + 799177 802316 -chrXVI 802275 804232 HC_gene_9086 49 + 802275 804227 -chrXVI 804232 804560 MC_gene_9087 1 + 804232 804560 -chrXVI 804581 805351 LC_gene_9088 1 + 804581 805351 -chrXVI 809854 810594 MC_gene_9089 1 + 809854 810594 -chrXVI 810446 812835 MC_gene_9090 2 + 810446 812835 -chrXVI 812836 813171 HC_gene_9091 1 + 812836 813171 -chrXVI 813231 813697 MC_gene_9092 1 + 813231 813553 -chrXVI 814299 815628 HC_gene_9093 21 + 814299 815622 -chrXVI 818295 819380 HC_gene_9094 230 + 818295 819205 -chrXVI 819782 820451 LC_gene_9095 1 + 819782 820451 -chrXVI 821730 822406 HC_gene_9096 37 + 821730 822053 -chrXVI 822564 824772 HC_gene_9097 805 + 822564 824475 -chrXVI 824960 825512 LC_gene_9098 1 + 824960 825512 -chrXVI 828068 828302 LC_gene_9099 1 + 828068 828302 -chrXVI 829455 831331 HC_gene_9100 769 + 829455 831129 -chrXVI 833128 833533 MC_gene_9101 1 + 833128 833524 -chrXVI 833653 837700 HC_gene_9102 117 + 833653 837700 -chrXVI 840275 840612 MC_gene_9103 1 + 840275 840612 -chrXVI 841094 842788 HC_gene_9104 11 + 841094 842788 -chrXVI 843193 844197 HC_gene_9105 40 + 843193 844195 -chrXVI 844333 844730 MC_gene_9106 1 + 844333 844730 -chrXVI 847956 850504 MC_gene_9107 2 + 847956 850504 -chrXVI 856489 857101 HC_gene_9108 1 + 856489 857041 -chrXVI 857383 860295 HC_gene_9109 65 + 857383 860246 -chrXVI 860946 864133 HC_gene_9110 83 + 860946 864133 -chrXVI 865081 865557 MC_gene_9111 1 + 865081 865557 -chrXVI 866717 868381 MC_gene_9112 1 + 866717 868381 -chrXVI 870690 876257 HC_gene_9113 679 + 870690 876127 -chrXVI 876431 877295 HC_gene_9114 2 + 876431 876893 -chrXVI 877897 880310 HC_gene_9115 87 + 877897 880206 -chrXVI 880622 881078 LC_gene_9116 1 + 880622 881078 -chrXVI 881308 882661 LC_gene_9117 1 + 881308 882661 -chrXVI 882963 883793 HC_gene_9118 1 + 882963 883793 -chrXVI 883225 883862 HC_gene_9119 600 + 883225 883862 -chrXVI 883790 885704 HC_gene_9120 33 + 883790 885637 -chrXVI 885764 886652 HC_gene_9121 30 + 885764 886652 -chrXVI 886626 888519 LC_gene_9122 1 + 886626 888041 -chrXVI 888953 892086 HC_gene_9123 11 + 888953 892086 -chrXVI 892301 893823 HC_gene_9124 14 + 892301 893819 -chrXVI 895938 897098 HC_gene_9125 32 + 895938 897077 -chrXVI 900130 900637 HC_gene_9126 128 + 900130 900532 -chrXVI 900716 901919 HC_gene_9127 375 + 900716 901641 -chrXVI 902007 906791 MC_gene_9128 3 + 902007 906791 -chrXVI 905955 906813 MC_gene_9129 2 + 905955 906813 -chrXVI 906916 909742 HC_gene_9130 20 + 906916 909742 -chrXVI 911239 912238 HC_gene_9131 689 + 911239 912086 -chrXVI 912625 917187 HC_gene_9132 25 + 912625 917062 -chrXVI 919319 920960 HC_gene_9133 298 + 919319 920937 -chrXVI 921155 921788 LC_gene_9134 1 + 921155 921788 -chrXVI 921904 922918 LC_gene_9135 1 + 921904 922918 -chrXVI 924161 928028 HC_gene_9136 1 + 924161 927998 -chrXVI 928695 930179 HC_gene_9137 7 + 928695 930179 -chrXVI 930248 931375 MC_gene_9138 1 + 930248 931264 -chrXVI 931395 933203 HC_gene_9139 4 + 931395 933203 -chrXVI 934016 935866 HC_gene_9140 31 + 934016 935846 -chrXVI 937220 938093 MC_gene_9141 1 + 937220 938093 -chrXVI 938140 939208 LC_gene_9142 1 + 938140 939208 -chrXVI 939177 939800 MC_gene_9143 1 + 939177 939800 -chrXVI 939861 942438 HC_gene_9144 8 + 939861 942438 -chrXVI 942765 947743 MC_gene_9145 1 + 942765 947743 -chrXVI 12961 14411 MC_gene_9146 1 - 12972 14411 -chrXVI 14351 16900 LC_gene_9147 1 - 14351 16900 -chrXVI 19513 19824 HC_gene_9148 1 - 19513 19824 -chrXVI 20571 21932 HC_gene_9149 1 - 20571 21932 -chrXVI 23708 24713 HC_gene_9150 2 - 23734 24713 -chrXVI 26558 29827 HC_gene_9151 6 - 26558 29827 -chrXVI 30275 31019 MC_gene_9152 1 - 30275 31019 -chrXVI 34105 34439 MC_gene_9153 1 - 34105 34439 -chrXVI 34463 34997 MC_gene_9154 1 - 34463 34997 -chrXVI 35748 36255 MC_gene_9155 1 - 35748 36255 -chrXVI 37574 38019 MC_gene_9156 1 - 37797 38019 -chrXVI 39505 40243 MC_gene_9157 1 - 39505 40243 -chrXVI 40128 40800 MC_gene_9158 1 - 40128 40800 -chrXVI 40145 42984 MC_gene_9159 1 - 40145 42984 -chrXVI 43055 44362 HC_gene_9160 14 - 43058 44362 -chrXVI 44287 46520 HC_gene_9161 84 - 44287 46520 -chrXVI 46633 47194 HC_gene_9162 6 - 46640 47194 -chrXVI 50858 52685 HC_gene_9163 38 - 51035 52685 -chrXVI 52722 53345 LC_gene_9164 1 - 52722 53345 -chrXVI 53394 56015 HC_gene_9165 33 - 53394 56015 -chrXVI 56235 57216 LC_gene_9166 1 - 56454 57216 -chrXVI 62352 63001 MC_gene_9167 1 - 62352 63001 -chrXVI 62521 63066 MC_gene_9168 1 - 62521 63066 -chrXVI 64550 66790 HC_gene_9169 51 - 64787 66790 -chrXVI 69155 70454 LC_gene_9170 1 - 69155 70454 -chrXVI 70967 73062 HC_gene_9171 5 - 70968 73062 -chrXVI 73127 73926 HC_gene_9172 219 - 73258 73926 -chrXVI 73977 74787 HC_gene_9173 186 - 74116 74787 -chrXVI 75122 76254 HC_gene_9174 4908 - 75549 76254 -chrXVI 76586 79393 HC_gene_9175 9 - 76589 79393 -chrXVI 79530 82379 MC_gene_9176 2 - 79530 82379 -chrXVI 82514 84248 HC_gene_9177 29 - 82516 84248 -chrXVI 84271 85338 HC_gene_9178 281 - 84271 85338 -chrXVI 86673 88239 HC_gene_9179 108 - 86894 88239 -chrXVI 90291 95186 HC_gene_9180 30 - 90291 95186 -chrXVI 95281 96267 HC_gene_9181 17 - 95299 96267 -chrXVI 96297 98682 HC_gene_9182 364 - 96372 98682 -chrXVI 99773 100140 MC_gene_9183 1 - 99773 100140 -chrXVI 101264 102751 HC_gene_9184 8 - 101283 102751 -chrXVI 104583 105496 HC_gene_9185 757 - 104775 105496 -chrXVI 105561 105910 MC_gene_9186 1 - 105685 105910 -chrXVI 106307 106715 LC_gene_9187 1 - 106316 106715 -chrXVI 107580 108253 MC_gene_9188 1 - 107580 108253 -chrXVI 114333 116490 MC_gene_9189 2 - 114333 116490 -chrXVI 117323 118027 MC_gene_9190 1 - 117323 118027 -chrXVI 120040 121434 HC_gene_9191 64 - 120055 121434 -chrXVI 126427 128448 HC_gene_9192 44 - 126436 128448 -chrXVI 128395 129188 HC_gene_9193 19 - 128395 129188 -chrXVI 131451 132207 MC_gene_9194 1 - 131824 132207 -chrXVI 132263 132725 HC_gene_9195 1 - 132430 132725 -chrXVI 134819 135433 MC_gene_9196 1 - 135071 135433 -chrXVI 135453 136471 LC_gene_9197 1 - 135503 136471 -chrXVI 139329 143206 HC_gene_9198 114 - 139332 143206 -chrXVI 143335 144110 MC_gene_9199 1 - 143335 144110 -chrXVI 145456 147172 HC_gene_9200 1 - 145479 147172 -chrXVI 148461 150248 HC_gene_9201 39 - 148476 150248 -chrXVI 151148 153154 HC_gene_9202 73 - 151338 153154 -chrXVI 153984 156232 HC_gene_9203 163 - 154244 156232 -chrXVI 156380 157634 HC_gene_9204 2 - 156380 157634 -chrXVI 159160 160030 LC_gene_9205 1 - 159575 160030 -chrXVI 162321 163914 HC_gene_9206 96 - 162337 163914 -chrXVI 165524 165878 MC_gene_9207 1 - 165524 165878 -chrXVI 167647 169420 HC_gene_9208 29 - 167702 169420 -chrXVI 169721 171183 HC_gene_9209 3 - 169721 171183 -chrXVI 171726 172768 HC_gene_9210 192 - 171774 172768 -chrXVI 174707 176013 MC_gene_9211 1 - 174707 176013 -chrXVI 175849 176127 MC_gene_9212 1 - 175849 176127 -chrXVI 182447 182940 HC_gene_9213 4 - 182447 182940 -chrXVI 183009 184725 MC_gene_9214 3 - 183009 184725 -chrXVI 184777 187842 HC_gene_9215 119 - 184880 187842 -chrXVI 187912 188600 HC_gene_9216 115 - 188069 188600 -chrXVI 190830 191594 MC_gene_9217 1 - 190950 191594 -chrXVI 193498 194245 LC_gene_9218 1 - 193498 194245 -chrXVI 194253 195051 HC_gene_9219 10 - 194253 195051 -chrXVI 194358 195229 HC_gene_9220 6 - 194358 195229 -chrXVI 195364 195588 HC_gene_9221 1 - 195364 195588 -chrXVI 195532 198461 HC_gene_9222 61 - 195532 198461 -chrXVI 199195 202548 HC_gene_9223 19 - 199412 202548 -chrXVI 204035 204956 MC_gene_9224 1 - 204035 204956 -chrXVI 206174 207662 LC_gene_9225 1 - 206174 207662 -chrXVI 210045 210264 LC_gene_9226 1 - 210045 210264 -chrXVI 210538 211070 MC_gene_9227 1 - 210538 211070 -chrXVI 211101 211829 LC_gene_9228 1 - 211115 211829 -chrXVI 212626 214109 HC_gene_9229 223 - 212925 214109 -chrXVI 215328 215654 HC_gene_9230 1 - 215343 215654 -chrXVI 215710 218391 HC_gene_9231 20 - 215710 218391 -chrXVI 218547 222895 HC_gene_9232 4 - 218547 222895 -chrXVI 224194 225880 HC_gene_9233 19 - 224194 225880 -chrXVI 226030 226505 HC_gene_9234 11 - 226030 226505 -chrXVI 228654 230875 HC_gene_9235 43 - 228836 230875 -chrXVI 232484 233445 HC_gene_9236 2 - 232484 233445 -chrXVI 233040 237154 HC_gene_9237 5 - 233040 237154 -chrXVI 238772 241548 HC_gene_9238 1 - 239041 241548 -chrXVI 241569 244082 HC_gene_9239 217 - 241584 244082 -chrXVI 244132 246253 HC_gene_9240 10 - 244222 246253 -chrXVI 250531 251787 HC_gene_9241 39 - 250597 251787 -chrXVI 251915 254381 HC_gene_9242 33 - 251967 254381 -chrXVI 254401 256818 HC_gene_9243 67 - 254403 256818 -chrXVI 256756 259403 HC_gene_9244 12 - 256756 259403 -chrXVI 259517 261200 HC_gene_9245 324 - 259577 261200 -chrXVI 261510 264374 HC_gene_9246 2 - 261545 264374 -chrXVI 266004 267791 HC_gene_9247 31 - 266010 267791 -chrXVI 270824 272953 HC_gene_9248 23 - 270924 272953 -chrXVI 273693 274534 LC_gene_9249 1 - 273693 274534 -chrXVI 275844 277561 HC_gene_9250 142 - 275862 277561 -chrXVI 277695 279948 HC_gene_9251 147 - 277970 279948 -chrXVI 280389 280651 LC_gene_9252 1 - 280392 280651 -chrXVI 280651 281533 HC_gene_9253 51 - 280952 281533 -chrXVI 282671 282970 LC_gene_9254 1 - 282671 282970 -chrXVI 283088 286308 HC_gene_9255 8 - 283228 286308 -chrXVI 287323 289263 HC_gene_9256 3 - 287327 289263 -chrXVI 289476 291101 HC_gene_9257 51 - 289476 291101 -chrXVI 291147 292442 HC_gene_9258 39 - 291150 292442 -chrXVI 292632 297303 HC_gene_9259 18 - 292648 297303 -chrXVI 298431 299524 HC_gene_9260 44 - 298467 299524 -chrXVI 299665 301359 HC_gene_9261 16 - 299740 301359 -chrXVI 306110 308309 HC_gene_9262 16 - 306252 308309 -chrXVI 308400 309640 HC_gene_9263 140 - 308415 309640 -chrXVI 317427 318989 HC_gene_9264 19 - 317427 318989 -chrXVI 319065 320794 HC_gene_9265 22 - 319149 320794 -chrXVI 323709 326325 MC_gene_9266 2 - 323765 326325 -chrXVI 327514 328904 HC_gene_9267 276 - 327804 328904 -chrXVI 331718 334540 HC_gene_9268 1 - 331718 334540 -chrXVI 331853 335709 HC_gene_9269 3 - 331853 335709 -chrXVI 335812 337176 HC_gene_9270 5 - 335812 337176 -chrXVI 337285 338711 HC_gene_9271 63 - 337316 338711 -chrXVI 339464 340524 LC_gene_9272 1 - 339497 340524 -chrXVI 340960 344939 HC_gene_9273 7 - 340961 344939 -chrXVI 344897 347467 HC_gene_9274 3 - 344897 347467 -chrXVI 347511 348284 HC_gene_9275 13 - 347566 348284 -chrXVI 349107 349633 LC_gene_9276 1 - 349107 349633 -chrXVI 349831 352321 HC_gene_9277 650 - 349839 352321 -chrXVI 352564 355436 HC_gene_9278 79 - 352747 355436 -chrXVI 357689 359426 HC_gene_9279 25 - 357689 359426 -chrXVI 363178 364095 HC_gene_9280 42 - 363181 364095 -chrXVI 364127 364785 HC_gene_9281 235 - 364182 364785 -chrXVI 366408 366788 HC_gene_9282 104 - 366408 366788 -chrXVI 367906 369475 HC_gene_9283 46 - 368017 369475 -chrXVI 369516 370682 HC_gene_9284 216 - 369516 370682 -chrXVI 372320 373083 LC_gene_9285 1 - 372320 373083 -chrXVI 375483 376546 LC_gene_9286 1 - 375483 376546 -chrXVI 376829 378425 HC_gene_9287 1901 - 377125 378425 -chrXVI 378889 381361 HC_gene_9288 72 - 378964 381361 -chrXVI 381947 382958 MC_gene_9289 1 - 381947 382958 -chrXVI 382981 383264 MC_gene_9290 1 - 382981 383264 -chrXVI 384409 386476 HC_gene_9291 63 - 384651 386476 -chrXVI 392501 393724 MC_gene_9292 1 - 392501 393724 -chrXVI 393088 393781 MC_gene_9293 2 - 393088 393781 -chrXVI 396458 398139 HC_gene_9294 15 - 396515 398139 -chrXVI 398287 404224 HC_gene_9295 13 - 398348 404224 -chrXVI 405560 406136 LC_gene_9296 1 - 405560 406136 -chrXVI 407583 408784 HC_gene_9297 457 - 407750 408784 -chrXVI 408929 410119 HC_gene_9298 2 - 409013 410119 -chrXVI 410336 411184 MC_gene_9299 2 - 410336 411184 -chrXVI 410501 411683 MC_gene_9300 2 - 410501 411683 -chrXVI 411475 412158 MC_gene_9301 1 - 411475 412158 -chrXVI 415411 415565 MC_gene_9302 1 - 415411 415565 -chrXVI 418089 419609 LC_gene_9303 1 - 418089 419609 -chrXVI 419785 420565 HC_gene_9304 99 - 419875 420565 -chrXVI 422562 423925 HC_gene_9305 49 - 422684 423925 -chrXVI 424090 425152 HC_gene_9306 35 - 424146 425152 -chrXVI 425168 426616 HC_gene_9307 44 - 425168 426616 -chrXVI 428381 429647 HC_gene_9308 80 - 428582 429647 -chrXVI 430371 430840 LC_gene_9309 1 - 430371 430840 -chrXVI 431042 431543 HC_gene_9310 7 - 431352 431543 -chrXVI 433850 434323 HC_gene_9311 6 - 434045 434323 -chrXVI 435107 435739 LC_gene_9312 1 - 435107 435739 -chrXVI 435739 435955 MC_gene_9313 1 - 435806 435955 -chrXVI 436855 438079 HC_gene_9314 1 - 436855 438079 -chrXVI 443252 443788 HC_gene_9315 3 - 443255 443788 -chrXVI 443589 443806 HC_gene_9316 1 - 443589 443806 -chrXVI 443848 444247 HC_gene_9317 4 - 443848 444247 -chrXVI 444934 445602 HC_gene_9318 16 - 445010 445602 -chrXVI 445629 450554 HC_gene_9319 4 - 445629 450554 -chrXVI 451288 453166 HC_gene_9320 120 - 451460 453166 -chrXVI 453207 455001 HC_gene_9321 17 - 453207 455001 -chrXVI 455364 456027 MC_gene_9322 1 - 455364 456027 -chrXVI 455649 456635 MC_gene_9323 2 - 455649 456635 -chrXVI 456964 458539 HC_gene_9324 110 - 457016 458539 -chrXVI 459093 459804 MC_gene_9325 1 - 459140 459804 -chrXVI 460424 462154 HC_gene_9326 87 - 460613 462154 -chrXVI 462282 464123 HC_gene_9327 132 - 462306 464123 -chrXVI 465659 466966 HC_gene_9328 39 - 465659 466966 -chrXVI 467701 469639 LC_gene_9329 1 - 467701 469639 -chrXVI 472225 472682 HC_gene_9330 1 - 472225 472682 -chrXVI 472775 474962 HC_gene_9331 32 - 472929 474962 -chrXVI 474881 475748 HC_gene_9332 6 - 474881 475748 -chrXVI 475813 478990 HC_gene_9333 2 - 475918 478990 -chrXVI 480794 481932 HC_gene_9334 1891 - 481364 481932 -chrXVI 482106 482884 MC_gene_9335 1 - 482220 482884 -chrXVI 482455 483434 MC_gene_9336 1 - 482455 483434 -chrXVI 483061 486216 MC_gene_9337 1 - 483061 486216 -chrXVI 486514 487138 LC_gene_9338 1 - 486514 487138 -chrXVI 487224 488255 LC_gene_9339 1 - 487224 488255 -chrXVI 488366 491566 HC_gene_9340 51 - 488571 491566 -chrXVI 491396 493333 HC_gene_9341 78 - 491396 493333 -chrXVI 495718 497674 LC_gene_9342 1 - 495718 497674 -chrXVI 497965 498607 MC_gene_9343 1 - 497965 498607 -chrXVI 499257 500218 MC_gene_9344 1 - 499257 500218 -chrXVI 500269 502250 HC_gene_9345 66 - 500419 502250 -chrXVI 502255 503247 LC_gene_9346 1 - 502255 503247 -chrXVI 504086 506440 HC_gene_9347 25 - 504201 506440 -chrXVI 510003 510637 MC_gene_9348 1 - 510003 510637 -chrXVI 512182 514288 HC_gene_9349 26 - 512255 514288 -chrXVI 514380 516361 HC_gene_9350 9 - 514429 516361 -chrXVI 516382 517154 HC_gene_9351 2 - 516422 517154 -chrXVI 517541 520225 HC_gene_9352 3 - 517541 520225 -chrXVI 521168 522119 LC_gene_9353 1 - 521168 522119 -chrXVI 524990 525479 MC_gene_9354 1 - 524990 525479 -chrXVI 525484 526934 HC_gene_9355 112 - 525484 526934 -chrXVI 528540 529370 HC_gene_9356 377 - 528660 529370 -chrXVI 533418 534738 HC_gene_9357 45 - 533514 534738 -chrXVI 535457 538960 HC_gene_9358 112 - 535609 538960 -chrXVI 541873 543895 HC_gene_9359 13 - 541980 543895 -chrXVI 545528 548262 LC_gene_9360 1 - 545547 548262 -chrXVI 550309 551719 HC_gene_9361 911 - 550331 551719 -chrXVI 552531 554360 HC_gene_9362 41 - 552531 554360 -chrXVI 554483 555105 LC_gene_9363 1 - 554483 555105 -chrXVI 556228 557327 MC_gene_9364 2 - 556228 557327 -chrXVI 557109 557504 MC_gene_9365 1 - 557109 557504 -chrXVI 557791 558344 MC_gene_9366 1 - 557848 558344 -chrXVI 559699 560287 MC_gene_9367 1 - 560034 560287 -chrXVI 560653 561131 HC_gene_9368 26 - 560653 561131 -chrXVI 561154 562317 MC_gene_9369 1 - 561154 562317 -chrXVI 563128 563833 HC_gene_9370 9 - 563128 563833 -chrXVI 563850 564486 HC_gene_9371 21 - 563850 564486 -chrXVI 563949 565056 HC_gene_9372 147 - 563949 565056 -chrXVI 565452 566902 HC_gene_9373 27 - 565452 566902 -chrXVI 566724 567958 HC_gene_9374 54 - 566724 567958 -chrXVI 569110 571087 HC_gene_9375 2 - 569110 571087 -chrXVI 571394 572109 LC_gene_9376 1 - 571394 572109 -chrXVI 575121 575498 HC_gene_9377 2 - 575121 575498 -chrXVI 575522 575914 HC_gene_9378 6 - 575543 575914 -chrXVI 577058 581230 HC_gene_9379 163 - 577307 581230 -chrXVI 582149 582779 HC_gene_9380 230 - 582221 582779 -chrXVI 582850 584152 HC_gene_9381 26 - 582850 584152 -chrXVI 584207 585935 HC_gene_9382 37 - 584227 585935 -chrXVI 584530 586255 HC_gene_9383 2 - 584530 586255 -chrXVI 586418 586923 LC_gene_9384 1 - 586418 586923 -chrXVI 587387 588133 LC_gene_9385 1 - 587387 588133 -chrXVI 588426 589905 LC_gene_9386 1 - 588426 589905 -chrXVI 590132 591115 HC_gene_9387 13 - 590132 591115 -chrXVI 591875 593162 HC_gene_9388 458 - 592187 593162 -chrXVI 593215 594085 HC_gene_9389 85 - 593221 594085 -chrXVI 596289 596479 MC_gene_9390 1 - 596289 596479 -chrXVI 600235 600441 MC_gene_9391 1 - 600235 600441 -chrXVI 600577 603587 HC_gene_9392 8 - 600577 603587 -chrXVI 603673 607354 HC_gene_9393 7 - 603722 607354 -chrXVI 607914 608251 MC_gene_9394 1 - 607914 608251 -chrXVI 608388 610072 HC_gene_9395 125 - 608388 610072 -chrXVI 613105 614579 HC_gene_9396 68 - 613244 614579 -chrXVI 615510 616288 MC_gene_9397 1 - 615510 616288 -chrXVI 619635 619959 HC_gene_9398 5 - 619635 619959 -chrXVI 621772 622356 MC_gene_9399 1 - 621772 622356 -chrXVI 622403 622611 LC_gene_9400 1 - 622409 622611 -chrXVI 622696 623168 LC_gene_9401 1 - 622723 623168 -chrXVI 624156 627023 HC_gene_9402 15 - 624265 627023 -chrXVI 628368 629041 HC_gene_9403 1 - 628391 629041 -chrXVI 637071 639006 HC_gene_9404 378 - 637251 639006 -chrXVI 640266 641088 MC_gene_9405 1 - 640266 641088 -chrXVI 642790 643303 LC_gene_9406 1 - 642790 643303 -chrXVI 643732 644964 HC_gene_9407 2 - 643748 644964 -chrXVI 645277 646102 MC_gene_9408 1 - 645277 646102 -chrXVI 646256 647089 HC_gene_9409 171 - 646367 647089 -chrXVI 647939 648339 MC_gene_9410 1 - 647981 648339 -chrXVI 649928 653787 HC_gene_9411 4 - 649970 653787 -chrXVI 654894 656611 HC_gene_9412 37 - 655027 656611 -chrXVI 657294 658044 LC_gene_9413 1 - 657294 658044 -chrXVI 658453 658976 LC_gene_9414 1 - 658455 658976 -chrXVI 661043 664741 HC_gene_9415 3 - 661050 664741 -chrXVI 664909 667437 HC_gene_9416 823 - 665493 667437 -chrXVI 669220 670879 LC_gene_9417 1 - 669220 670879 -chrXVI 671421 672060 MC_gene_9418 2 - 671421 672060 -chrXVI 672361 673226 LC_gene_9419 1 - 672361 673226 -chrXVI 673240 674404 MC_gene_9420 1 - 673438 674404 -chrXVI 674588 675664 HC_gene_9421 126 - 674688 675664 -chrXVI 675868 676930 HC_gene_9422 17 - 675893 676930 -chrXVI 677379 678372 HC_gene_9423 397 - 677502 678372 -chrXVI 677601 678697 HC_gene_9424 1 - 677601 678697 -chrXVI 678724 679285 LC_gene_9425 1 - 678724 679285 -chrXVI 679651 680825 MC_gene_9426 1 - 679651 680825 -chrXVI 680998 681803 HC_gene_9427 4 - 680998 681803 -chrXVI 682725 684353 HC_gene_9428 6 - 682740 684353 -chrXVI 684441 685475 HC_gene_9429 561 - 684488 685475 -chrXVI 690624 692481 HC_gene_9430 220 - 690624 692481 -chrXVI 692580 694904 HC_gene_9431 739 - 692647 694904 -chrXVI 695500 696874 HC_gene_9432 62 - 695614 696874 -chrXVI 696953 697326 HC_gene_9433 5 - 696966 697326 -chrXVI 699378 699986 MC_gene_9434 1 - 699378 699986 -chrXVI 700036 700340 LC_gene_9435 1 - 700036 700340 -chrXVI 702348 704156 HC_gene_9436 3 - 702348 704156 -chrXVI 704092 704697 HC_gene_9437 161 - 704092 704697 -chrXVI 708306 709916 HC_gene_9438 15 - 708306 709916 -chrXVI 711293 713065 HC_gene_9439 170 - 711327 713065 -chrXVI 715801 718497 HC_gene_9440 35 - 715801 718497 -chrXVI 718556 719375 HC_gene_9441 64 - 718631 719375 -chrXVI 719427 720489 HC_gene_9442 19 - 719428 720489 -chrXVI 720814 724965 HC_gene_9443 2 - 720935 724965 -chrXVI 728549 730202 HC_gene_9444 128 - 728549 730202 -chrXVI 730451 731778 HC_gene_9445 2 - 730451 731778 -chrXVI 731130 731849 HC_gene_9446 3003 - 731130 731849 -chrXVI 733127 736712 HC_gene_9447 20 - 733297 736712 -chrXVI 736890 739634 HC_gene_9448 9 - 736910 739634 -chrXVI 741133 742149 HC_gene_9449 70 - 741298 742149 -chrXVI 745329 746850 HC_gene_9450 382 - 745609 746850 -chrXVI 749023 751972 HC_gene_9451 33 - 749150 751972 -chrXVI 753528 753844 MC_gene_9452 1 - 753528 753844 -chrXVI 756613 758228 LC_gene_9453 1 - 756613 758228 -chrXVI 758919 759462 MC_gene_9454 1 - 758919 759462 -chrXVI 764924 765821 LC_gene_9455 1 - 764924 765821 -chrXVI 766443 767531 MC_gene_9456 1 - 766443 767531 -chrXVI 767518 768991 LC_gene_9457 1 - 767518 768991 -chrXVI 769490 770543 HC_gene_9458 8 - 769490 770543 -chrXVI 773691 775429 HC_gene_9459 61 - 773728 775429 -chrXVI 776185 776959 HC_gene_9460 14 - 776210 776959 -chrXVI 777143 777734 LC_gene_9461 1 - 777146 777734 -chrXVI 780192 781687 HC_gene_9462 45 - 780270 781687 -chrXVI 781326 781743 HC_gene_9463 101 - 781326 781743 -chrXVI 785082 786580 LC_gene_9464 1 - 785496 786580 -chrXVI 786821 787650 HC_gene_9465 14 - 786821 787650 -chrXVI 789431 790373 MC_gene_9466 1 - 789431 790373 -chrXVI 791118 792437 HC_gene_9467 25 - 791122 792437 -chrXVI 793655 794536 HC_gene_9468 76 - 793717 794536 -chrXVI 795770 797296 HC_gene_9469 68 - 795884 797296 -chrXVI 797545 799031 MC_gene_9470 2 - 797739 799031 -chrXVI 799733 800595 MC_gene_9471 1 - 799733 800595 -chrXVI 801531 801754 MC_gene_9472 1 - 801559 801754 -chrXVI 804406 810310 MC_gene_9473 1 - 804406 810310 -chrXVI 810725 812679 HC_gene_9474 30 - 810841 812679 -chrXVI 812961 814117 HC_gene_9475 83 - 813039 814117 -chrXVI 815534 818081 HC_gene_9476 9 - 815562 818081 -chrXVI 819679 821459 HC_gene_9477 31 - 819694 821459 -chrXVI 824352 824948 HC_gene_9478 19 - 824352 824948 -chrXVI 824963 826606 HC_gene_9479 44 - 824963 826606 -chrXVI 826690 828215 HC_gene_9480 177 - 826709 828215 -chrXVI 828305 830421 HC_gene_9481 10 - 828386 830421 -chrXVI 831042 831644 MC_gene_9482 1 - 831042 831644 -chrXVI 831661 833484 HC_gene_9483 22 - 831661 833484 -chrXVI 831838 834231 HC_gene_9484 1 - 831838 834231 -chrXVI 835453 837480 HC_gene_9485 10 - 835453 837480 -chrXVI 837584 840064 HC_gene_9486 49 - 837584 840064 -chrXVI 840079 840797 MC_gene_9487 1 - 840079 840797 -chrXVI 842701 842974 LC_gene_9488 1 - 842701 842974 -chrXVI 843882 845201 MC_gene_9489 1 - 844057 845201 -chrXVI 850569 852455 MC_gene_9490 1 - 850569 852455 -chrXVI 855537 856286 MC_gene_9491 1 - 855537 856286 -chrXVI 859976 860583 LC_gene_9492 1 - 859976 860583 -chrXVI 862211 864080 HC_gene_9493 1 - 862218 864080 -chrXVI 864100 866494 HC_gene_9494 29 - 864103 866494 -chrXVI 866536 868324 HC_gene_9495 15 - 866673 868324 -chrXVI 868411 870042 HC_gene_9496 903 - 868474 870042 -chrXVI 874001 875122 LC_gene_9497 1 - 874001 875122 -chrXVI 875960 876680 HC_gene_9498 189 - 876103 876680 -chrXVI 876783 877683 HC_gene_9499 86 - 876788 877683 -chrXVI 877769 878416 LC_gene_9500 1 - 877973 878416 -chrXVI 881048 881934 MC_gene_9501 1 - 881048 881934 -chrXVI 881495 882043 MC_gene_9502 1 - 881495 882043 -chrXVI 882058 882581 HC_gene_9503 1 - 882130 882581 -chrXVI 882600 883002 MC_gene_9504 1 - 882600 883002 -chrXVI 883063 883584 MC_gene_9505 1 - 883063 883584 -chrXVI 883728 884197 LC_gene_9506 1 - 883728 884197 -chrXVI 885092 886107 MC_gene_9507 1 - 885092 886107 -chrXVI 886179 887870 HC_gene_9508 112 - 886179 887870 -chrXVI 887916 888729 HC_gene_9509 8 - 887919 888729 -chrXVI 890805 892085 HC_gene_9510 64 - 890948 892085 -chrXVI 893712 895775 HC_gene_9511 34 - 893712 895775 -chrXVI 896932 899724 HC_gene_9512 236 - 896940 899724 -chrXVI 899887 900904 HC_gene_9513 1 - 900527 900904 -chrXVI 900927 901549 MC_gene_9514 1 - 900927 901549 -chrXVI 909527 911028 HC_gene_9515 22 - 909538 911028 -chrXVI 911867 912489 HC_gene_9516 155 - 911888 912489 -chrXVI 916928 919072 HC_gene_9517 31 - 916971 919072 -chrXVI 920293 920629 LC_gene_9518 1 - 920293 920629 -chrXVI 921035 923570 MC_gene_9519 1 - 921035 923570 -chrXVI 923569 923984 HC_gene_9520 2 - 923569 923984 -chrXVI 924114 927328 HC_gene_9521 2 - 924114 927328 -chrXVI 927120 928263 HC_gene_9522 7 - 927120 928263 -chrXVI 930059 931252 HC_gene_9523 11 - 930120 931252 -chrXVI 933433 934745 LC_gene_9524 1 - 933746 934745 -chrXVI 935866 936890 HC_gene_9525 9 - 935866 936890 -chrXVI 935938 937398 HC_gene_9526 2 - 935938 937398 -chrXVI 938019 939044 HC_gene_9527 100 - 938032 939044 -chrXVI 939196 941182 HC_gene_9528 14 - 939199 941182 -chrXVI 942874 947043 LC_gene_9529 1 - 942874 947043 -chrM 6545 7142 MC_gene_9530 1 + 6545 6963 -chrM 13986 14702 MC_gene_9531 1 + 13986 14544 -chrM 32231 32550 MC_gene_9532 1 + 32231 32550 -chrM 59348 60125 MC_gene_9533 1 + 59348 59647 -chrM 60145 62146 MC_gene_9534 1 + 60145 62146 -chrM 60523 62610 MC_gene_9535 1 + 60523 62331 diff --git a/results/2022-1201/files_features/Ivanov-et-al/called_yeast_lncRNAs.bed b/results/2022-1201/files_features/Ivanov-et-al/called_yeast_lncRNAs.bed deleted file mode 100644 index 090965d..0000000 --- a/results/2022-1201/files_features/Ivanov-et-al/called_yeast_lncRNAs.bed +++ /dev/null @@ -1,505 +0,0 @@ -chrI 56969 57484 Nascent_001 0 + -chrI 68027 68681 Nascent_002 0 + -chrI 101264 101819 Nascent_003 0 + -chrI 113558 114199 Nascent_004 0 + -chrI 138577 139427 Nascent_005 0 + -chrI 176848 177600 Nascent_006 0 + -chrI 183672 187469 Nascent_007 0 + -chrI 192070 197399 Nascent_008 0 + -chrI 198735 200124 Nascent_009 0 + -chrI 200619 202022 Nascent_010 0 + -chrI 202432 203456 Nascent_011 0 + -chrI 207444 208071 Nascent_012 0 + -chrI 34393 35060 Nascent_013 0 - -chrI 82583 83182 Nascent_014 0 - -chrI 136172 136709 Nascent_015 0 - -chrI 142834 143351 Nascent_016 0 - -chrI 181323 182358 Nascent_017 0 - -chrI 186616 187462 Nascent_018 0 - -chrI 187738 189045 Nascent_019 0 - -chrI 189686 190556 Nascent_020 0 - -chrI 190815 191331 Nascent_021 0 - -chrI 199917 200431 Nascent_022 0 - -chrI 207121 208077 Nascent_023 0 - -chrII 127599 128312 Nascent_024 0 + -chrII 151504 152023 Nascent_025 0 + -chrII 158674 159263 Nascent_026 0 + -chrII 181611 182297 Nascent_027 0 + -chrII 326826 327359 Nascent_028 0 + -chrII 346721 347787 Nascent_029 0 + -chrII 370005 370526 Nascent_030 0 + -chrII 375976 376504 Nascent_031 0 + -chrII 378681 379920 Nascent_032 0 + -chrII 554473 555241 Nascent_033 0 + -chrII 586326 587203 Nascent_034 0 + -chrII 593203 594091 Nascent_035 0 + -chrII 662648 663208 Nascent_036 0 + -chrII 732683 733213 Nascent_037 0 + -chrII 735697 736202 Nascent_038 0 + -chrII 742761 743307 Nascent_039 0 + -chrII 771802 772461 Nascent_040 0 + -chrII 784818 785407 Nascent_041 0 + -chrII 24189 24783 Nascent_042 0 - -chrII 49417 50909 Nascent_043 0 - -chrII 91456 92228 Nascent_044 0 - -chrII 99465 100203 Nascent_045 0 - -chrII 202255 203008 Nascent_046 0 - -chrII 246003 246614 Nascent_047 0 - -chrII 341519 342238 Nascent_048 0 - -chrII 589194 590046 Nascent_049 0 - -chrII 697396 698049 Nascent_050 0 - -chrII 719996 720605 Nascent_051 0 - -chrII 738708 739687 Nascent_052 0 - -chrII 760262 760969 Nascent_053 0 - -chrIII 76003 76507 Nascent_054 0 + -chrIII 95496 100863 Nascent_055 0 + -chrIII 122791 123575 Nascent_056 0 + -chrIII 137041 137684 Nascent_057 0 + -chrIII 254311 255283 Nascent_058 0 + -chrIII 255283 258837 Nascent_059 0 + -chrIII 293733 294407 Nascent_060 0 + -chrIII 20152 22193 Nascent_061 0 - -chrIII 27661 28913 Nascent_062 0 - -chrIII 29653 30426 Nascent_063 0 - -chrIII 114657 115228 Nascent_064 0 - -chrIII 116211 116726 Nascent_065 0 - -chrIII 168195 168696 Nascent_066 0 - -chrIII 215807 217053 Nascent_067 0 - -chrIII 225762 226406 Nascent_068 0 - -chrIII 293802 294387 Nascent_069 0 - -chrIV 19318 20157 Nascent_070 0 + -chrIV 83409 84238 Nascent_071 0 + -chrIV 282130 282786 Nascent_072 0 + -chrIV 392490 393456 Nascent_073 0 + -chrIV 431705 432280 Nascent_074 0 + -chrIV 476414 477111 Nascent_075 0 + -chrIV 494614 495504 Nascent_076 0 + -chrIV 555332 556205 Nascent_077 0 + -chrIV 562689 563211 Nascent_078 0 + -chrIV 569083 570038 Nascent_079 0 + -chrIV 628779 629374 Nascent_080 0 + -chrIV 651934 652697 Nascent_081 0 + -chrIV 914839 915436 Nascent_082 0 + -chrIV 974407 975239 Nascent_083 0 + -chrIV 1014306 1014995 Nascent_084 0 + -chrIV 1031958 1032589 Nascent_085 0 + -chrIV 1033370 1034602 Nascent_086 0 + -chrIV 1366314 1367420 Nascent_087 0 + -chrIV 1408882 1409932 Nascent_088 0 + -chrIV 1468829 1469333 Nascent_089 0 + -chrIV 1493287 1493971 Nascent_090 0 + -chrIV 21908 22465 Nascent_091 0 - -chrIV 42956 43844 Nascent_092 0 - -chrIV 271986 272651 Nascent_093 0 - -chrIV 351876 352632 Nascent_094 0 - -chrIV 368282 369072 Nascent_095 0 - -chrIV 386231 387146 Nascent_096 0 - -chrIV 505754 506321 Nascent_097 0 - -chrIV 550691 551735 Nascent_098 0 - -chrIV 552547 553090 Nascent_099 0 - -chrIV 569810 570333 Nascent_100 0 - -chrIV 580253 580889 Nascent_101 0 - -chrIV 594045 594630 Nascent_102 0 - -chrIV 599623 600163 Nascent_103 0 - -chrIV 644989 645510 Nascent_104 0 - -chrIV 858567 859130 Nascent_105 0 - -chrIV 930677 931357 Nascent_106 0 - -chrIV 936344 937019 Nascent_107 0 - -chrIV 962470 963206 Nascent_108 0 - -chrIV 1016753 1017290 Nascent_109 0 - -chrIV 1032944 1034259 Nascent_110 0 - -chrIV 1036392 1037081 Nascent_111 0 - -chrIV 1047603 1048860 Nascent_112 0 - -chrIV 1145639 1146139 Nascent_113 0 - -chrIV 1165029 1165758 Nascent_114 0 - -chrIV 1183510 1184460 Nascent_115 0 - -chrIV 1269050 1269696 Nascent_116 0 - -chrIV 1337386 1338037 Nascent_117 0 - -chrIV 1385805 1386548 Nascent_118 0 - -chrIV 1411166 1412037 Nascent_119 0 - -chrIV 1414274 1415105 Nascent_120 0 - -chrIV 1426725 1427227 Nascent_121 0 - -chrIV 1429193 1430838 Nascent_122 0 - -chrIV 1489864 1491193 Nascent_123 0 - -chrIV 1511173 1511809 Nascent_124 0 - -chrV 46258 46816 Nascent_125 0 + -chrV 60538 61168 Nascent_126 0 + -chrV 65358 65871 Nascent_127 0 + -chrV 106385 106953 Nascent_128 0 + -chrV 140557 141465 Nascent_129 0 + -chrV 150260 151176 Nascent_130 0 + -chrV 176188 177752 Nascent_131 0 + -chrV 187692 188243 Nascent_132 0 + -chrV 254639 255374 Nascent_133 0 + -chrV 258294 259382 Nascent_134 0 + -chrV 266284 266803 Nascent_135 0 + -chrV 335373 335992 Nascent_136 0 + -chrV 395272 396036 Nascent_137 0 + -chrV 422012 423132 Nascent_138 0 + -chrV 474252 474994 Nascent_139 0 + -chrV 539498 540702 Nascent_140 0 + -chrV 15972 16687 Nascent_141 0 - -chrV 68915 70258 Nascent_142 0 - -chrV 95736 96410 Nascent_143 0 - -chrV 106208 106907 Nascent_144 0 - -chrV 166937 167608 Nascent_145 0 - -chrV 221510 222151 Nascent_146 0 - -chrV 242445 242955 Nascent_147 0 - -chrV 291900 292663 Nascent_148 0 - -chrV 321323 321909 Nascent_149 0 - -chrV 524848 525811 Nascent_150 0 - -chrV 545908 546442 Nascent_151 0 - -chrVI 64274 64952 Nascent_152 0 + -chrVI 81862 82528 Nascent_153 0 + -chrVI 197617 198563 Nascent_154 0 + -chrVI 223210 223734 Nascent_155 0 + -chrVI 244124 244854 Nascent_156 0 + -chrVI 263043 263893 Nascent_157 0 + -chrVI 24655 25257 Nascent_158 0 - -chrVI 95202 95728 Nascent_159 0 - -chrVI 129637 130229 Nascent_160 0 - -chrVI 149288 149793 Nascent_161 0 - -chrVI 159346 160352 Nascent_162 0 - -chrVI 210136 211053 Nascent_163 0 - -chrVI 263346 263861 Nascent_164 0 - -chrVII 2749 4287 Nascent_165 0 + -chrVII 34725 35457 Nascent_166 0 + -chrVII 48507 49528 Nascent_167 0 + -chrVII 55703 56442 Nascent_168 0 + -chrVII 196738 197968 Nascent_169 0 + -chrVII 323599 324284 Nascent_170 0 + -chrVII 398658 399190 Nascent_171 0 + -chrVII 437258 437831 Nascent_172 0 + -chrVII 497151 497885 Nascent_173 0 + -chrVII 554706 555333 Nascent_174 0 + -chrVII 753053 754188 Nascent_175 0 + -chrVII 808081 808644 Nascent_176 0 + -chrVII 823282 823975 Nascent_177 0 + -chrVII 834601 835518 Nascent_178 0 + -chrVII 884097 886031 Nascent_179 0 + -chrVII 913467 914074 Nascent_180 0 + -chrVII 939001 939640 Nascent_181 0 + -chrVII 55830 56483 Nascent_182 0 - -chrVII 86790 87497 Nascent_183 0 - -chrVII 97495 98619 Nascent_184 0 - -chrVII 162369 162871 Nascent_185 0 - -chrVII 181509 182169 Nascent_186 0 - -chrVII 209743 210360 Nascent_187 0 - -chrVII 228913 229845 Nascent_188 0 - -chrVII 273729 274271 Nascent_189 0 - -chrVII 287464 288279 Nascent_190 0 - -chrVII 311550 312050 Nascent_191 0 - -chrVII 384885 385433 Nascent_192 0 - -chrVII 412132 412749 Nascent_193 0 - -chrVII 460662 461454 Nascent_194 0 - -chrVII 515805 516504 Nascent_195 0 - -chrVII 598533 599151 Nascent_196 0 - -chrVII 707747 708812 Nascent_197 0 - -chrVII 745982 746571 Nascent_198 0 - -chrVII 769775 770330 Nascent_199 0 - -chrVII 777049 777671 Nascent_200 0 - -chrVII 810916 811456 Nascent_201 0 - -chrVII 857046 857857 Nascent_202 0 - -chrVIII 17878 18542 Nascent_203 0 + -chrVIII 39513 40024 Nascent_204 0 + -chrVIII 74713 75361 Nascent_205 0 + -chrVIII 250376 251019 Nascent_206 0 + -chrVIII 525619 526362 Nascent_207 0 + -chrVIII 16904 17447 Nascent_208 0 - -chrVIII 30381 31519 Nascent_209 0 - -chrVIII 50011 50532 Nascent_210 0 - -chrVIII 135975 136635 Nascent_211 0 - -chrVIII 178485 179038 Nascent_212 0 - -chrVIII 280125 281273 Nascent_213 0 - -chrVIII 292914 293441 Nascent_214 0 - -chrVIII 323859 324544 Nascent_215 0 - -chrVIII 324875 325414 Nascent_216 0 - -chrVIII 341561 342226 Nascent_217 0 - -chrVIII 364254 364794 Nascent_218 0 - -chrVIII 415781 417312 Nascent_219 0 - -chrVIII 421311 422296 Nascent_220 0 - -chrVIII 457695 458511 Nascent_221 0 - -chrVIII 491065 491628 Nascent_222 0 - -chrIX 149134 150237 Nascent_223 0 + -chrIX 160222 160746 Nascent_224 0 + -chrIX 165306 165855 Nascent_225 0 + -chrIX 179817 180397 Nascent_226 0 + -chrIX 197484 198130 Nascent_227 0 + -chrIX 202952 204179 Nascent_228 0 + -chrIX 210646 212434 Nascent_229 0 + -chrIX 275001 275565 Nascent_230 0 + -chrIX 337225 338225 Nascent_231 0 + -chrIX 356596 357130 Nascent_232 0 + -chrIX 370115 370654 Nascent_233 0 + -chrIX 436189 436977 Nascent_234 0 + -chrIX 47572 48450 Nascent_235 0 - -chrIX 53205 53773 Nascent_236 0 - -chrIX 112959 113519 Nascent_237 0 - -chrIX 138579 139081 Nascent_238 0 - -chrIX 250563 251095 Nascent_239 0 - -chrIX 260894 261415 Nascent_240 0 - -chrIX 362054 362996 Nascent_241 0 - -chrIX 374386 375160 Nascent_242 0 - -chrIX 379218 379796 Nascent_243 0 - -chrIX 393053 393629 Nascent_244 0 - -chrIX 434814 436411 Nascent_245 0 - -chrX 31034 31802 Nascent_246 0 + -chrX 101884 102526 Nascent_247 0 + -chrX 136374 136915 Nascent_248 0 + -chrX 314125 314777 Nascent_249 0 + -chrX 315737 316672 Nascent_250 0 + -chrX 328022 329760 Nascent_251 0 + -chrX 419757 420325 Nascent_252 0 + -chrX 425011 429711 Nascent_253 0 + -chrX 453550 454137 Nascent_254 0 + -chrX 455202 456005 Nascent_255 0 + -chrX 569578 570224 Nascent_256 0 + -chrX 703573 704143 Nascent_257 0 + -chrX 28362 29001 Nascent_258 0 - -chrX 41882 43633 Nascent_259 0 - -chrX 53585 54122 Nascent_260 0 - -chrX 79441 79967 Nascent_261 0 - -chrX 119161 119987 Nascent_262 0 - -chrX 182495 184410 Nascent_263 0 - -chrX 236528 237045 Nascent_264 0 - -chrX 241060 241666 Nascent_265 0 - -chrX 359734 360880 Nascent_266 0 - -chrX 403103 404247 Nascent_267 0 - -chrX 415309 416046 Nascent_268 0 - -chrX 534987 535795 Nascent_269 0 - -chrX 611006 612120 Nascent_270 0 - -chrX 623334 623911 Nascent_271 0 - -chrX 696014 697331 Nascent_272 0 - -chrX 721108 721996 Nascent_273 0 - -chrXI 68887 69777 Nascent_274 0 + -chrXI 84047 84583 Nascent_275 0 + -chrXI 134353 135097 Nascent_276 0 + -chrXI 230743 231297 Nascent_277 0 + -chrXI 302906 303713 Nascent_278 0 + -chrXI 385160 385692 Nascent_279 0 + -chrXI 514123 514763 Nascent_280 0 + -chrXI 535556 536140 Nascent_281 0 + -chrXI 565899 566589 Nascent_282 0 + -chrXI 599195 599811 Nascent_283 0 + -chrXI 614031 614623 Nascent_284 0 + -chrXI 11547 13350 Nascent_285 0 - -chrXI 18810 19451 Nascent_286 0 - -chrXI 24158 24924 Nascent_287 0 - -chrXI 45460 46411 Nascent_288 0 - -chrXI 216104 216957 Nascent_289 0 - -chrXI 261242 261954 Nascent_290 0 - -chrXI 277972 278564 Nascent_291 0 - -chrXI 334975 336231 Nascent_292 0 - -chrXI 342122 342631 Nascent_293 0 - -chrXI 444555 445080 Nascent_294 0 - -chrXI 478501 479037 Nascent_295 0 - -chrXI 582545 583356 Nascent_296 0 - -chrXII 39781 40383 Nascent_297 0 + -chrXII 49014 49741 Nascent_298 0 + -chrXII 92231 92762 Nascent_299 0 + -chrXII 159108 159845 Nascent_300 0 + -chrXII 341693 342299 Nascent_301 0 + -chrXII 347903 349126 Nascent_302 0 + -chrXII 394491 395348 Nascent_303 0 + -chrXII 396744 397274 Nascent_304 0 + -chrXII 404510 405059 Nascent_305 0 + -chrXII 447830 448616 Nascent_306 0 + -chrXII 498197 498869 Nascent_307 0 + -chrXII 566529 568497 Nascent_308 0 + -chrXII 605600 606103 Nascent_309 0 + -chrXII 609720 610657 Nascent_310 0 + -chrXII 697161 697661 Nascent_311 0 + -chrXII 719442 720128 Nascent_312 0 + -chrXII 837600 838906 Nascent_313 0 + -chrXII 847582 848182 Nascent_314 0 + -chrXII 875007 875652 Nascent_315 0 + -chrXII 877658 878167 Nascent_316 0 + -chrXII 893055 893584 Nascent_317 0 + -chrXII 921945 922930 Nascent_318 0 + -chrXII 1025623 1026834 Nascent_319 0 + -chrXII 1028135 1028775 Nascent_320 0 + -chrXII 86276 86805 Nascent_321 0 - -chrXII 92681 93224 Nascent_322 0 - -chrXII 147104 147646 Nascent_323 0 - -chrXII 168313 169015 Nascent_324 0 - -chrXII 263366 263922 Nascent_325 0 - -chrXII 282813 283844 Nascent_326 0 - -chrXII 307412 308822 Nascent_327 0 - -chrXII 340971 341861 Nascent_328 0 - -chrXII 423888 424770 Nascent_329 0 - -chrXII 523920 524709 Nascent_330 0 - -chrXII 545455 545958 Nascent_331 0 - -chrXII 629125 631116 Nascent_332 0 - -chrXII 631116 631617 Nascent_333 0 - -chrXII 678243 678775 Nascent_334 0 - -chrXII 682874 683503 Nascent_335 0 - -chrXII 808861 809368 Nascent_336 0 - -chrXII 877404 878102 Nascent_337 0 - -chrXII 898395 898950 Nascent_338 0 - -chrXII 939176 940988 Nascent_339 0 - -chrXII 949968 950611 Nascent_340 0 - -chrXII 987685 988211 Nascent_341 0 - -chrXII 1041533 1042202 Nascent_342 0 - -chrXIII 23924 24666 Nascent_343 0 + -chrXIII 32169 32999 Nascent_344 0 + -chrXIII 42029 42537 Nascent_345 0 + -chrXIII 70576 71686 Nascent_346 0 + -chrXIII 87073 87688 Nascent_347 0 + -chrXIII 148604 149284 Nascent_348 0 + -chrXIII 217206 220087 Nascent_349 0 + -chrXIII 317613 318125 Nascent_350 0 + -chrXIII 439126 441005 Nascent_351 0 + -chrXIII 599337 600405 Nascent_352 0 + -chrXIII 622684 623401 Nascent_353 0 + -chrXIII 649381 650004 Nascent_354 0 + -chrXIII 756636 757179 Nascent_355 0 + -chrXIII 806678 807679 Nascent_356 0 + -chrXIII 827731 828615 Nascent_357 0 + -chrXIII 829514 830053 Nascent_358 0 + -chrXIII 914887 915439 Nascent_359 0 + -chrXIII 23897 25843 Nascent_360 0 - -chrXIII 54038 54991 Nascent_361 0 - -chrXIII 216595 217113 Nascent_362 0 - -chrXIII 353147 353698 Nascent_363 0 - -chrXIII 384312 384838 Nascent_364 0 - -chrXIII 407035 407535 Nascent_365 0 - -chrXIII 448306 448936 Nascent_366 0 - -chrXIII 516627 517196 Nascent_367 0 - -chrXIII 537058 537566 Nascent_368 0 - -chrXIII 572076 572727 Nascent_369 0 - -chrXIII 777223 777732 Nascent_370 0 - -chrXIII 793901 794730 Nascent_371 0 - -chrXIII 904542 905105 Nascent_372 0 - -chrXIII 915076 916049 Nascent_373 0 - -chrXIII 916537 917360 Nascent_374 0 - -chrXIV 22899 23995 Nascent_375 0 + -chrXIV 25095 25644 Nascent_376 0 + -chrXIV 43218 43742 Nascent_377 0 + -chrXIV 51924 52592 Nascent_378 0 + -chrXIV 64818 65630 Nascent_379 0 + -chrXIV 246498 247103 Nascent_380 0 + -chrXIV 258247 258942 Nascent_381 0 + -chrXIV 272606 274326 Nascent_382 0 + -chrXIV 301969 302641 Nascent_383 0 + -chrXIV 310499 315423 Nascent_384 0 + -chrXIV 382560 383857 Nascent_385 0 + -chrXIV 445991 447316 Nascent_386 0 + -chrXIV 466930 467449 Nascent_387 0 + -chrXIV 498835 499626 Nascent_388 0 + -chrXIV 547080 547924 Nascent_389 0 + -chrXIV 602194 602836 Nascent_390 0 + -chrXIV 661486 662291 Nascent_391 0 + -chrXIV 694284 695569 Nascent_392 0 + -chrXIV 708433 709194 Nascent_393 0 + -chrXIV 86383 87400 Nascent_394 0 - -chrXIV 100977 101526 Nascent_395 0 - -chrXIV 107108 107662 Nascent_396 0 - -chrXIV 154320 154852 Nascent_397 0 - -chrXIV 214064 215023 Nascent_398 0 - -chrXIV 244889 245414 Nascent_399 0 - -chrXIV 301692 302313 Nascent_400 0 - -chrXIV 339676 340219 Nascent_401 0 - -chrXIV 365826 366513 Nascent_402 0 - -chrXIV 370816 371372 Nascent_403 0 - -chrXIV 482195 482838 Nascent_404 0 - -chrXIV 498798 499333 Nascent_405 0 - -chrXIV 552643 553219 Nascent_406 0 - -chrXIV 560313 561250 Nascent_407 0 - -chrXIV 631211 631991 Nascent_408 0 - -chrXIV 641881 642392 Nascent_409 0 - -chrXIV 702746 703446 Nascent_410 0 - -chrXIV 707761 708265 Nascent_411 0 - -chrXIV 738686 740019 Nascent_412 0 - -chrXIV 771877 772588 Nascent_413 0 - -chrXV 47817 48829 Nascent_414 0 + -chrXV 113629 114558 Nascent_415 0 + -chrXV 141517 142408 Nascent_416 0 + -chrXV 160791 161435 Nascent_417 0 + -chrXV 170673 173131 Nascent_418 0 + -chrXV 274002 274873 Nascent_419 0 + -chrXV 373748 374358 Nascent_420 0 + -chrXV 394880 395836 Nascent_421 0 + -chrXV 436802 437315 Nascent_422 0 + -chrXV 461831 463065 Nascent_423 0 + -chrXV 464075 464618 Nascent_424 0 + -chrXV 554850 555709 Nascent_425 0 + -chrXV 648380 649253 Nascent_426 0 + -chrXV 692302 694417 Nascent_427 0 + -chrXV 852104 852835 Nascent_428 0 + -chrXV 877138 878049 Nascent_429 0 + -chrXV 1024564 1025073 Nascent_430 0 + -chrXV 1031525 1032320 Nascent_431 0 + -chrXV 1043550 1044240 Nascent_432 0 + -chrXV 1068795 1069333 Nascent_433 0 + -chrXV 1074187 1074729 Nascent_434 0 + -chrXV 33872 34488 Nascent_435 0 - -chrXV 98851 99473 Nascent_436 0 - -chrXV 146445 147193 Nascent_437 0 - -chrXV 166110 166714 Nascent_438 0 - -chrXV 264604 265172 Nascent_439 0 - -chrXV 304381 305140 Nascent_440 0 - -chrXV 331746 332258 Nascent_441 0 - -chrXV 382604 383176 Nascent_442 0 - -chrXV 421729 422426 Nascent_443 0 - -chrXV 517443 518885 Nascent_444 0 - -chrXV 682185 682777 Nascent_445 0 - -chrXV 757640 758154 Nascent_446 0 - -chrXV 810887 811424 Nascent_447 0 - -chrXV 837059 837578 Nascent_448 0 - -chrXV 856773 860586 Nascent_449 0 - -chrXV 881970 882531 Nascent_450 0 - -chrXV 903297 903865 Nascent_451 0 - -chrXV 908224 908775 Nascent_452 0 - -chrXV 932808 933459 Nascent_453 0 - -chrXV 936020 936603 Nascent_454 0 - -chrXV 940974 943426 Nascent_455 0 - -chrXV 953695 954249 Nascent_456 0 - -chrXV 989895 991439 Nascent_457 0 - -chrXV 1004184 1004684 Nascent_458 0 - -chrXV 1064421 1065281 Nascent_459 0 - -chrXVI 30434 31205 Nascent_460 0 + -chrXVI 87670 88405 Nascent_461 0 + -chrXVI 121919 123185 Nascent_462 0 + -chrXVI 344591 345526 Nascent_463 0 + -chrXVI 379004 379615 Nascent_464 0 + -chrXVI 386882 389512 Nascent_465 0 + -chrXVI 583013 583744 Nascent_466 0 + -chrXVI 588284 589150 Nascent_467 0 + -chrXVI 684550 685074 Nascent_468 0 + -chrXVI 754641 755662 Nascent_469 0 + -chrXVI 758476 759781 Nascent_470 0 + -chrXVI 864257 865009 Nascent_471 0 + -chrXVI 923226 923736 Nascent_472 0 + -chrXVI 936380 937200 Nascent_473 0 + -chrXVI 19844 20523 Nascent_474 0 - -chrXVI 38286 38805 Nascent_475 0 - -chrXVI 301604 302724 Nascent_476 0 - -chrXVI 348304 348888 Nascent_477 0 - -chrXVI 374343 375335 Nascent_478 0 - -chrXVI 404501 405540 Nascent_479 0 - -chrXVI 479731 480352 Nascent_480 0 - -chrXVI 572363 573094 Nascent_481 0 - -chrXVI 630353 631283 Nascent_482 0 - -chrXVI 752494 753066 Nascent_483 0 - -chrXVI 754016 754632 Nascent_484 0 - -chrXVI 821479 822203 Nascent_485 0 - -chrXVI 906253 906758 Nascent_486 0 - -chrM 15 1648 Nascent_487 0 + -chrM 7142 8226 Nascent_488 0 + -chrM 8505 11007 Nascent_489 0 + -chrM 13356 13966 Nascent_490 0 + -chrM 14702 29639 Nascent_491 0 + -chrM 30082 30599 Nascent_492 0 + -chrM 32573 34012 Nascent_493 0 + -chrM 34969 50716 Nascent_494 0 + -chrM 58007 59328 Nascent_495 0 + -chrM 69719 71680 Nascent_496 0 + -chrM 72631 76156 Nascent_497 0 + -chrM 77418 80377 Nascent_498 0 + -chrM 80644 81156 Nascent_499 0 + -chrM 82353 84363 Nascent_500 0 + -chrM 85010 85779 Nascent_501 0 + -chrM 53337 53905 Nascent_502 0 - -chrM 54280 55014 Nascent_503 0 - -chrM 73477 76405 Nascent_504 0 - -chrM 76759 78226 Nascent_505 0 - diff --git a/results/2022-1201/files_features/Ivanov-et-al/called_yeast_transcripts.bed b/results/2022-1201/files_features/Ivanov-et-al/called_yeast_transcripts.bed deleted file mode 100644 index c5a281c..0000000 --- a/results/2022-1201/files_features/Ivanov-et-al/called_yeast_transcripts.bed +++ /dev/null @@ -1,56019 +0,0 @@ -chrI 1679 3954 LC_gene_0070_tx_1 1 - 1679 3954 . 1 2276 0 -chrI 4978 6332 HC_gene_0071_tx_1 1 - 4978 6332 . 1 1355 0 -chrI 6547 7207 HC_gene_0001_tx_1 1 + 6547 7207 . 1 661 0 -chrI 7006 9198 MC_gene_0072_tx_1 1 - 7006 9198 . 1 2193 0 -chrI 8388 9052 MC_gene_0002_tx_1 1 + 8388 9052 . 1 665 0 -chrI 9333 9764 MC_gene_0003_tx_1 1 + 9333 9764 . 1 432 0 -chrI 9333 9915 MC_gene_0003_tx_2 1 + 9333 9915 . 1 583 0 -chrI 9876 10533 LC_gene_0073_tx_1 1 - 9876 10533 . 1 658 0 -chrI 10663 11059 LC_gene_0074_tx_1 1 - 10663 11059 . 1 397 0 -chrI 11328 15815 MC_gene_0004_tx_1 1 + 11328 15815 . 1 4488 0 -chrI 11414 14344 LC_gene_0075_tx_1 1 - 11414 14344 . 2 741,1866 0,1065 -chrI 12778 14189 MC_gene_0004_tx_2 1 + 12778 14189 . 1 1412 0 -chrI 15660 16299 MC_gene_0005_tx_1 1 + 15660 16299 . 1 640 0 -chrI 16782 18908 MC_gene_0076_tx_1 1 - 16782 18908 . 1 2127 0 -chrI 16974 18276 MC_gene_0006_tx_1 1 + 16974 18276 . 1 1303 0 -chrI 19906 22110 LC_gene_0007_tx_1 1 + 19906 22110 . 1 2205 0 -chrI 22395 23620 MC_gene_0077_tx_1 1 - 22395 23620 . 1 1226 0 -chrI 22780 23792 MC_gene_0008_tx_1 1 + 22780 23792 . 1 1013 0 -chrI 23909 24727 HC_gene_0078_tx_1 1 - 23909 24727 . 1 819 0 -chrI 23995 24555 LC_gene_0009_tx_1 1 + 23995 24555 . 1 561 0 -chrI 24837 28122 HC_gene_0010_tx_1 1 + 24837 28122 . 1 3286 0 -chrI 28032 29777 HC_gene_0079_tx_1 1 - 28032 29777 . 1 1746 0 -chrI 30117 31150 MC_gene_0011_tx_1 1 + 30117 31150 . 1 1034 0 -chrI 30211 30782 MC_gene_0080_tx_1 1 - 30211 30782 . 1 572 0 -chrI 31057 31458 HC_gene_0081_tx_1 17 - 31057 31458 . 1 402 0 -chrI 31057 31600 HC_gene_0081_tx_2 2 - 31057 31600 . 1 544 0 -chrI 31223 31589 HC_gene_0012_tx_1 1 + 31223 31589 . 1 367 0 -chrI 31241 31589 HC_gene_0012_tx_2 34 + 31241 31589 . 1 349 0 -chrI 31241 33027 HC_gene_0013_tx_1 4 + 31241 33027 . 1 1787 0 -chrI 31528 33027 HC_gene_0013_tx_2 3 + 31528 33027 . 1 1500 0 -chrI 31725 33027 HC_gene_0013_tx_3 3 + 31725 33027 . 1 1303 0 -chrI 32918 34350 HC_gene_0082_tx_1 1 - 32918 34350 . 1 1433 0 -chrI 32918 34359 HC_gene_0082_tx_2 1 - 32918 34359 . 1 1442 0 -chrI 32918 34373 HC_gene_0082_tx_3 1 - 32918 34373 . 1 1456 0 -chrI 33088 34359 HC_gene_0082_tx_4 1 - 33088 34359 . 1 1272 0 -chrI 33358 34844 HC_gene_0014_tx_1 11 + 33358 34844 . 1 1487 0 -chrI 33852 34844 HC_gene_0014_tx_2 2 + 33852 34844 . 1 993 0 -chrI 34069 34844 HC_gene_0014_tx_3 5 + 34069 34844 . 1 776 0 -chrI 34258 34844 HC_gene_0014_tx_4 6 + 34258 34844 . 1 587 0 -chrI 34258 34844 HC_gene_0014_tx_5 1 + 34258 34844 . 2 454,69 0,518 -chrI 34392 34844 HC_gene_0014_tx_6 2 + 34392 34844 . 1 453 0 -chrI 34487 34844 HC_gene_0014_tx_7 3 + 34487 34844 . 1 358 0 -chrI 34588 34844 HC_gene_0014_tx_8 3 + 34588 34844 . 1 257 0 -chrI 35106 36390 HC_gene_0015_tx_1 106 + 35106 36390 . 1 1285 0 -chrI 35106 36390 HC_gene_0015_tx_2 1 + 35106 36390 . 2 550,592 0,693 -chrI 35557 36390 HC_gene_0015_tx_3 18 + 35557 36390 . 1 834 0 -chrI 35557 36390 HC_gene_0015_tx_4 1 + 35557 36390 . 2 151,622 0,212 -chrI 35757 36326 LC_gene_0083_tx_1 1 - 35757 36326 . 1 570 0 -chrI 35793 36390 HC_gene_0015_tx_5 35 + 35793 36390 . 1 598 0 -chrI 36524 37197 HC_gene_0016_tx_1 14 + 36524 37197 . 1 674 0 -chrI 36524 37367 HC_gene_0016_tx_2 120 + 36524 37367 . 1 844 0 -chrI 36524 37367 HC_gene_0016_tx_3 1 + 36524 37367 . 2 422,347 0,497 -chrI 36524 37367 HC_gene_0016_tx_4 1 + 36524 37367 . 2 207,532 0,312 -chrI 36773 37367 HC_gene_0016_tx_5 12 + 36773 37367 . 1 595 0 -chrI 37215 38981 LC_gene_0084_tx_1 1 - 37215 38981 . 1 1767 0 -chrI 37414 39032 HC_gene_0017_tx_1 14 + 37414 39032 . 1 1619 0 -chrI 37414 39107 HC_gene_0017_tx_2 7 + 37414 39107 . 1 1694 0 -chrI 38564 39032 HC_gene_0017_tx_3 3 + 38564 39032 . 1 469 0 -chrI 38564 39107 HC_gene_0017_tx_4 1 + 38564 39107 . 1 544 0 -chrI 39204 42020 HC_gene_0018_tx_1 1 + 39204 42020 . 3 388,1234,538 0,446,2279 -chrI 39204 42020 HC_gene_0018_tx_2 14 + 39204 42020 . 1 2817 0 -chrI 39204 42020 HC_gene_0018_tx_3 1 + 39204 42020 . 2 112,2606 0,211 -chrI 39204 42020 HC_gene_0018_tx_4 1 + 39204 42020 . 2 2338,392 0,2425 -chrI 39362 42020 HC_gene_0018_tx_5 1 + 39362 42020 . 1 2659 0 -chrI 41347 42020 HC_gene_0018_tx_6 11 + 41347 42020 . 1 674 0 -chrI 42103 42703 LC_gene_0085_tx_1 1 - 42103 42703 . 1 601 0 -chrI 42154 42821 HC_gene_0019_tx_1 77 + 42154 42821 . 1 668 0 -chrI 42154 42821 HC_gene_0019_tx_2 1 + 42154 42821 . 2 176,445 0,223 -chrI 42305 42821 HC_gene_0019_tx_3 12 + 42305 42821 . 1 517 0 -chrI 42716 42952 HC_gene_0086_tx_1 3 - 42716 42952 . 1 237 0 -chrI 42716 43064 HC_gene_0086_tx_2 20 - 42716 43064 . 1 349 0 -chrI 42716 43270 HC_gene_0086_tx_3 16 - 42716 43270 . 1 555 0 -chrI 42716 43600 HC_gene_0086_tx_5 14 - 42716 43600 . 1 885 0 -chrI 42797 43064 HC_gene_0086_tx_7 2 - 42797 43064 . 1 268 0 -chrI 42797 43270 HC_gene_0086_tx_4 1 - 42797 43270 . 1 474 0 -chrI 42797 43600 HC_gene_0086_tx_6 1 - 42797 43600 . 1 804 0 -chrI 43468 45118 HC_gene_0020_tx_1 4 + 43468 45118 . 1 1651 0 -chrI 43468 45587 HC_gene_0020_tx_2 1 + 43468 45587 . 1 2120 0 -chrI 45053 45673 MC_gene_0087_tx_1 1 - 45053 45673 . 1 621 0 -chrI 45810 48316 HC_gene_0021_tx_1 30 + 45810 48316 . 1 2507 0 -chrI 45810 48316 HC_gene_0021_tx_2 1 + 45810 48316 . 2 1164,878 0,1629 -chrI 46215 48316 HC_gene_0021_tx_3 1 + 46215 48316 . 1 2102 0 -chrI 47089 48316 HC_gene_0021_tx_4 14 + 47089 48316 . 1 1228 0 -chrI 47644 48316 HC_gene_0021_tx_5 11 + 47644 48316 . 1 673 0 -chrI 47717 48316 HC_gene_0021_tx_6 8 + 47717 48316 . 1 600 0 -chrI 48056 48316 HC_gene_0021_tx_7 9 + 48056 48316 . 1 261 0 -chrI 48550 51791 HC_gene_0022_tx_1 6 + 48550 51791 . 1 3242 0 -chrI 48550 51859 HC_gene_0022_tx_2 4 + 48550 51859 . 1 3310 0 -chrI 51772 52162 HC_gene_0088_tx_1 16 - 51772 52162 . 1 391 0 -chrI 51772 52652 HC_gene_0088_tx_2 69 - 51772 52652 . 1 881 0 -chrI 51772 54791 HC_gene_0088_tx_3 3 - 51772 54791 . 1 3020 0 -chrI 52401 52652 HC_gene_0088_tx_4 1 - 52401 52652 . 1 252 0 -chrI 52401 54791 HC_gene_0088_tx_5 1 - 52401 54791 . 1 2391 0 -chrI 52868 53307 LC_gene_0023_tx_1 1 + 52868 53307 . 1 440 0 -chrI 54316 55065 MC_gene_0024_tx_1 1 + 54316 55065 . 1 750 0 -chrI 54932 56887 HC_gene_0089_tx_1 3 - 54932 56887 . 1 1956 0 -chrI 55220 56887 HC_gene_0089_tx_2 1 - 55220 56887 . 1 1668 0 -chrI 56909 57384 HC_gene_0090_tx_1 93 - 56909 57384 . 1 476 0 -chrI 57505 57963 HC_gene_0025_tx_1 135 + 57505 57963 . 1 459 0 -chrI 57729 58477 HC_gene_0091_tx_1 5 - 57729 58477 . 1 749 0 -chrI 57863 58227 HC_gene_0091_tx_4 48 - 57863 58227 . 1 365 0 -chrI 57863 58390 HC_gene_0091_tx_2 64 - 57863 58390 . 1 528 0 -chrI 57863 58477 HC_gene_0091_tx_3 427 - 57863 58477 . 1 615 0 -chrI 57983 58702 LC_gene_0026_tx_1 1 + 57983 58702 . 1 720 0 -chrI 58618 59933 HC_gene_0092_tx_1 3 - 58618 59933 . 1 1316 0 -chrI 58618 61059 HC_gene_0092_tx_2 11 - 58618 61059 . 1 2442 0 -chrI 58618 61059 HC_gene_0092_tx_3 1 - 58618 61059 . 2 1155,1017 0,1425 -chrI 61299 62657 HC_gene_0027_tx_1 72 + 61299 62657 . 1 1359 0 -chrI 61388 62657 HC_gene_0027_tx_2 5 + 61388 62657 . 1 1270 0 -chrI 61498 62657 HC_gene_0027_tx_3 9 + 61498 62657 . 1 1160 0 -chrI 61688 62657 HC_gene_0027_tx_4 36 + 61688 62657 . 1 970 0 -chrI 61790 62657 HC_gene_0027_tx_5 9 + 61790 62657 . 1 868 0 -chrI 61892 62657 HC_gene_0027_tx_6 12 + 61892 62657 . 1 766 0 -chrI 61971 62657 HC_gene_0027_tx_7 33 + 61971 62657 . 1 687 0 -chrI 62151 62657 HC_gene_0027_tx_8 44 + 62151 62657 . 1 507 0 -chrI 62582 63194 LC_gene_0093_tx_1 1 - 62582 63194 . 1 613 0 -chrI 62776 65479 HC_gene_0028_tx_1 8 + 62776 65479 . 1 2704 0 -chrI 64289 65479 HC_gene_0028_tx_2 3 + 64289 65479 . 1 1191 0 -chrI 65381 66251 HC_gene_0094_tx_1 3 - 65381 66251 . 1 871 0 -chrI 65381 66546 HC_gene_0094_tx_2 1 - 65381 66546 . 1 1166 0 -chrI 65381 67845 HC_gene_0094_tx_5 4 - 65381 67845 . 1 2465 0 -chrI 65459 67690 HC_gene_0094_tx_6 1 - 65459 67690 . 1 2232 0 -chrI 65459 67690 HC_gene_0094_tx_7 1 - 65459 67690 . 2 1544,570 0,1662 -chrI 65459 67845 HC_gene_0094_tx_8 2 - 65459 67845 . 1 2387 0 -chrI 65565 66251 HC_gene_0094_tx_10 4 - 65565 66251 . 1 687 0 -chrI 65565 66546 HC_gene_0094_tx_3 12 - 65565 66546 . 1 982 0 -chrI 65565 66546 HC_gene_0094_tx_4 1 - 65565 66546 . 2 711,178 0,804 -chrI 65565 67845 HC_gene_0094_tx_9 9 - 65565 67845 . 1 2281 0 -chrI 67941 68541 LC_gene_0095_tx_1 1 - 67941 68541 . 1 601 0 -chrI 68641 69491 HC_gene_0096_tx_1 5 - 68641 69491 . 1 851 0 -chrI 68641 69582 HC_gene_0096_tx_2 160 - 68641 69582 . 1 942 0 -chrI 68702 69826 MC_gene_0029_tx_1 1 + 68702 69826 . 1 1125 0 -chrI 70030 70580 HC_gene_0030_tx_1 1 + 70030 70580 . 1 551 0 -chrI 70221 71510 MC_gene_0097_tx_1 1 - 70221 71510 . 1 1290 0 -chrI 71707 73454 HC_gene_0031_tx_1 1 + 71707 73454 . 2 899,789 0,959 -chrI 71746 73454 HC_gene_0031_tx_2 1 + 71746 73454 . 2 1056,492 0,1217 -chrI 71758 73454 HC_gene_0031_tx_3 4192 + 71758 73454 . 1 1697 0 -chrI 71758 73454 HC_gene_0031_tx_4 1 + 71758 73454 . 2 281,1297 0,400 -chrI 71758 73454 HC_gene_0031_tx_5 2 + 71758 73454 . 2 887,741 0,956 -chrI 71758 73454 HC_gene_0031_tx_6 1 + 71758 73454 . 2 456,1118 0,579 -chrI 71758 73454 HC_gene_0031_tx_7 1 + 71758 73454 . 2 22,1118 0,579 -chrI 71758 73454 HC_gene_0031_tx_8 1 + 71758 73454 . 3 644,393,160 0,727,1537 -chrI 71758 73454 HC_gene_0031_tx_9 1 + 71758 73454 . 4 155,339,87,632 0,409,921,1065 -chrI 71758 73454 HC_gene_0031_tx_10 1 + 71758 73454 . 2 732,899 0,798 -chrI 71758 73454 HC_gene_0031_tx_11 1 + 71758 73454 . 2 417,916 0,781 -chrI 71758 73454 HC_gene_0031_tx_12 1 + 71758 73454 . 2 426,688 0,1009 -chrI 71758 73454 HC_gene_0031_tx_13 1 + 71758 73454 . 2 90,1507 0,190 -chrI 71758 73454 HC_gene_0031_tx_14 1 + 71758 73454 . 2 965,629 0,1068 -chrI 71758 73454 HC_gene_0031_tx_15 1 + 71758 73454 . 2 74,1562 0,135 -chrI 71758 73454 HC_gene_0031_tx_16 1 + 71758 73454 . 2 266,1279 0,418 -chrI 71758 73454 HC_gene_0031_tx_17 1 + 71758 73454 . 2 989,574 0,1123 -chrI 71758 73454 HC_gene_0031_tx_18 5 + 71758 73454 . 2 989,649 0,1048 -chrI 71758 73454 HC_gene_0031_tx_19 1 + 71758 73454 . 2 272,1334 0,363 -chrI 71758 73454 HC_gene_0031_tx_20 1 + 71758 73454 . 2 765,776 0,921 -chrI 71758 73454 HC_gene_0031_tx_21 1 + 71758 73454 . 2 722,768 0,929 -chrI 71758 73454 HC_gene_0031_tx_22 1 + 71758 73454 . 2 212,1334 0,363 -chrI 71758 73454 HC_gene_0031_tx_23 1 + 71758 73454 . 3 718,224,173 0,1161,1524 -chrI 71758 73454 HC_gene_0031_tx_24 2 + 71758 73454 . 2 327,1237 0,460 -chrI 71758 73454 HC_gene_0031_tx_25 1 + 71758 73454 . 2 1022,586 0,1111 -chrI 71758 73454 HC_gene_0031_tx_26 1 + 71758 73454 . 2 1415,219 0,1478 -chrI 71758 73454 HC_gene_0031_tx_27 1 + 71758 73454 . 2 993,632 0,1065 -chrI 71758 73454 HC_gene_0031_tx_28 1 + 71758 73454 . 2 853,789 0,908 -chrI 71758 73454 HC_gene_0031_tx_29 1 + 71758 73454 . 2 1537,88 0,1609 -chrI 71758 73454 HC_gene_0031_tx_30 1 + 71758 73454 . 2 155,1356 0,341 -chrI 71758 73454 HC_gene_0031_tx_31 1 + 71758 73454 . 2 887,698 0,999 -chrI 71758 73454 HC_gene_0031_tx_32 1 + 71758 73454 . 2 443,452 0,1245 -chrI 71758 73454 HC_gene_0031_tx_33 2 + 71758 73454 . 2 941,688 0,1009 -chrI 71758 73454 HC_gene_0031_tx_34 1 + 71758 73454 . 2 511,574 0,1123 -chrI 71758 73454 HC_gene_0031_tx_35 1 + 71758 73454 . 2 708,899 0,798 -chrI 71758 73454 HC_gene_0031_tx_36 1 + 71758 73454 . 2 887,762 0,935 -chrI 71758 73454 HC_gene_0031_tx_37 1 + 71758 73454 . 2 235,793 0,904 -chrI 71758 73454 HC_gene_0031_tx_38 1 + 71758 73454 . 2 632,995 0,702 -chrI 71758 73454 HC_gene_0031_tx_39 1 + 71758 73454 . 2 490,492 0,1205 -chrI 71758 73454 HC_gene_0031_tx_40 1 + 71758 73454 . 2 348,978 0,719 -chrI 71758 73454 HC_gene_0031_tx_41 1 + 71758 73454 . 2 927,688 0,1009 -chrI 71758 73454 HC_gene_0031_tx_42 1 + 71758 73454 . 2 1025,613 0,1084 -chrI 71758 73454 HC_gene_0031_tx_43 1 + 71758 73454 . 2 882,675 0,1022 -chrI 71758 73454 HC_gene_0031_tx_44 1 + 71758 73454 . 2 481,649 0,1048 -chrI 71758 73454 HC_gene_0031_tx_45 1 + 71758 73454 . 2 973,632 0,1065 -chrI 71758 73454 HC_gene_0031_tx_46 1 + 71758 73454 . 2 256,1331 0,366 -chrI 71758 73454 HC_gene_0031_tx_47 1 + 71758 73454 . 3 327,452,805 0,379,892 -chrI 71758 73454 HC_gene_0031_tx_48 1 + 71758 73454 . 2 887,722 0,975 -chrI 71758 73454 HC_gene_0031_tx_49 2 + 71758 73454 . 2 965,652 0,1045 -chrI 71758 73454 HC_gene_0031_tx_50 1 + 71758 73454 . 2 575,1022 0,675 -chrI 71758 73454 HC_gene_0031_tx_51 1 + 71758 73454 . 2 941,680 0,1017 -chrI 71758 73454 HC_gene_0031_tx_52 1 + 71758 73454 . 2 1067,574 0,1123 -chrI 71758 73454 HC_gene_0031_tx_53 1 + 71758 73454 . 2 655,975 0,722 -chrI 71758 73454 HC_gene_0031_tx_54 1 + 71758 73454 . 2 965,632 0,1065 -chrI 71758 73454 HC_gene_0031_tx_55 1 + 71758 73454 . 2 610,492 0,1205 -chrI 71758 73454 HC_gene_0031_tx_56 1 + 71758 73454 . 2 575,1057 0,640 -chrI 71758 73454 HC_gene_0031_tx_57 1 + 71758 73454 . 2 1073,536 0,1161 -chrI 71758 73454 HC_gene_0031_tx_58 1 + 71758 73454 . 2 1004,649 0,1048 -chrI 71758 73454 HC_gene_0031_tx_59 1 + 71758 73454 . 2 366,1019 0,678 -chrI 71758 73454 HC_gene_0031_tx_60 1 + 71758 73454 . 2 970,658 0,1039 -chrI 71758 73454 HC_gene_0031_tx_61 1 + 71758 73454 . 2 502,1022 0,675 -chrI 71758 73454 HC_gene_0031_tx_62 1 + 71758 73454 . 2 422,1125 0,572 -chrI 71758 73454 HC_gene_0031_tx_63 1 + 71758 73454 . 2 343,776 0,921 -chrI 71758 73454 HC_gene_0031_tx_64 1 + 71758 73454 . 2 1008,629 0,1068 -chrI 71758 73454 HC_gene_0031_tx_65 1 + 71758 73454 . 2 1147,461 0,1236 -chrI 71758 73454 HC_gene_0031_tx_66 1 + 71758 73454 . 2 881,776 0,921 -chrI 71758 73454 HC_gene_0031_tx_67 1 + 71758 73454 . 2 546,978 0,719 -chrI 71758 73454 HC_gene_0031_tx_68 1 + 71758 73454 . 2 927,704 0,993 -chrI 71758 73454 HC_gene_0031_tx_69 1 + 71758 73454 . 2 887,709 0,988 -chrI 71758 73454 HC_gene_0031_tx_70 1 + 71758 73454 . 2 1454,100 0,1597 -chrI 71758 73454 HC_gene_0031_tx_71 1 + 71758 73454 . 2 965,684 0,1013 -chrI 71758 73454 HC_gene_0031_tx_72 1 + 71758 73454 . 2 644,970 0,727 -chrI 71758 73454 HC_gene_0031_tx_73 1 + 71758 73454 . 2 246,1081 0,616 -chrI 71758 73454 HC_gene_0031_tx_74 1 + 71758 73454 . 2 748,449 0,1248 -chrI 71758 73454 HC_gene_0031_tx_75 1 + 71758 73454 . 2 965,649 0,1048 -chrI 71758 73454 HC_gene_0031_tx_76 1 + 71758 73454 . 2 965,677 0,1020 -chrI 71758 73454 HC_gene_0031_tx_77 1 + 71758 73454 . 2 887,720 0,977 -chrI 71758 73454 HC_gene_0031_tx_78 1 + 71758 73454 . 2 933,688 0,1009 -chrI 71758 73454 HC_gene_0031_tx_79 1 + 71758 73454 . 2 155,1492 0,205 -chrI 71758 73454 HC_gene_0031_tx_80 1 + 71758 73454 . 2 349,1045 0,652 -chrI 71758 73454 HC_gene_0031_tx_81 1 + 71758 73454 . 2 249,1366 0,331 -chrI 71758 73454 HC_gene_0031_tx_82 1 + 71758 73454 . 2 965,624 0,1073 -chrI 71758 73454 HC_gene_0031_tx_83 1 + 71758 73454 . 2 502,597 0,1100 -chrI 71758 73454 HC_gene_0031_tx_84 1 + 71758 73454 . 2 464,574 0,1123 -chrI 71758 73454 HC_gene_0031_tx_85 1 + 71758 73454 . 2 860,640 0,1057 -chrI 71758 73454 HC_gene_0031_tx_86 1 + 71758 73454 . 2 283,1237 0,460 -chrI 71758 73454 HC_gene_0031_tx_87 1 + 71758 73454 . 2 111,1288 0,409 -chrI 71758 73454 HC_gene_0031_tx_88 1 + 71758 73454 . 2 881,693 0,1004 -chrI 71758 73454 HC_gene_0031_tx_89 1 + 71758 73454 . 2 94,1070 0,627 -chrI 71758 73454 HC_gene_0031_tx_90 1 + 71758 73454 . 2 983,627 0,1070 -chrI 71758 73454 HC_gene_0031_tx_91 1 + 71758 73454 . 2 959,586 0,1111 -chrI 71758 73454 HC_gene_0031_tx_92 1 + 71758 73454 . 2 287,990 0,707 -chrI 71758 73454 HC_gene_0031_tx_93 1 + 71758 73454 . 2 827,751 0,946 -chrI 71758 73454 HC_gene_0031_tx_94 1 + 71758 73454 . 2 989,632 0,1065 -chrI 71758 73454 HC_gene_0031_tx_95 1 + 71758 73454 . 2 582,755 0,942 -chrI 71758 73454 HC_gene_0031_tx_96 1 + 71758 73454 . 2 414,1237 0,460 -chrI 71758 73454 HC_gene_0031_tx_97 1 + 71758 73454 . 2 1520,115 0,1582 -chrI 71758 73454 HC_gene_0031_tx_98 1 + 71758 73454 . 2 348,995 0,702 -chrI 71758 73454 HC_gene_0031_tx_99 1 + 71758 73454 . 2 752,632 0,1065 -chrI 71758 73454 HC_gene_0031_tx_100 1 + 71758 73454 . 2 1022,632 0,1065 -chrI 71771 73454 HC_gene_0031_tx_101 1 + 71771 73454 . 2 526,1087 0,597 -chrI 71771 73454 HC_gene_0031_tx_102 1 + 71771 73454 . 2 517,755 0,929 -chrI 71773 73454 HC_gene_0031_tx_103 1 + 71773 73454 . 2 897,709 0,973 -chrI 71773 73454 HC_gene_0031_tx_104 1 + 71773 73454 . 2 826,751 0,931 -chrI 71773 73454 HC_gene_0031_tx_105 1 + 71773 73454 . 1 1682 0 -chrI 71779 73454 HC_gene_0031_tx_106 1 + 71779 73454 . 2 894,211 0,1465 -chrI 71915 73454 HC_gene_0031_tx_107 355 + 71915 73454 . 1 1540 0 -chrI 71915 73454 HC_gene_0031_tx_108 1 + 71915 73454 . 2 770,703 0,837 -chrI 71915 73454 HC_gene_0031_tx_109 1 + 71915 73454 . 2 730,751 0,789 -chrI 71915 73454 HC_gene_0031_tx_110 1 + 71915 73454 . 2 82,1101 0,439 -chrI 71915 73454 HC_gene_0031_tx_111 1 + 71915 73454 . 2 97,1321 0,219 -chrI 71915 73454 HC_gene_0031_tx_112 1 + 71915 73454 . 2 865,574 0,966 -chrI 71915 73454 HC_gene_0031_tx_113 1 + 71915 73454 . 3 418,251,395 0,545,1145 -chrI 71915 73454 HC_gene_0031_tx_114 1 + 71915 73454 . 2 832,629 0,911 -chrI 72045 73454 HC_gene_0031_tx_115 380 + 72045 73454 . 1 1410 0 -chrI 72045 73454 HC_gene_0031_tx_116 1 + 72045 73454 . 2 156,978 0,432 -chrI 72045 73454 HC_gene_0031_tx_117 1 + 72045 73454 . 2 56,1118 0,292 -chrI 72045 73454 HC_gene_0031_tx_118 1 + 72045 73454 . 2 868,449 0,961 -chrI 72278 73454 HC_gene_0031_tx_119 657 + 72278 73454 . 1 1177 0 -chrI 72278 73454 HC_gene_0031_tx_120 1 + 72278 73454 . 2 244,846 0,331 -chrI 72278 73454 HC_gene_0031_tx_121 1 + 72278 73454 . 2 124,904 0,273 -chrI 72278 73454 HC_gene_0031_tx_122 1 + 72278 73454 . 2 100,449 0,728 -chrI 72278 73454 HC_gene_0031_tx_123 1 + 72278 73454 . 2 469,632 0,545 -chrI 72278 73454 HC_gene_0031_tx_124 1 + 72278 73454 . 2 1011,57 0,1120 -chrI 72278 73454 HC_gene_0031_tx_125 1 + 72278 73454 . 2 361,776 0,401 -chrI 72278 73454 HC_gene_0031_tx_126 1 + 72278 73454 . 2 970,61 0,1116 -chrI 72278 73454 HC_gene_0031_tx_127 1 + 72278 73454 . 2 619,160 0,1017 -chrI 72278 73454 HC_gene_0031_tx_128 1 + 72278 73454 . 2 488,536 0,641 -chrI 72588 73454 HC_gene_0031_tx_129 667 + 72588 73454 . 1 867 0 -chrI 72588 73454 HC_gene_0031_tx_130 1 + 72588 73454 . 2 192,554 0,313 -chrI 72588 73454 HC_gene_0031_tx_131 1 + 72588 73454 . 2 686,70 0,797 -chrI 72588 73454 HC_gene_0031_tx_132 1 + 72588 73454 . 2 309,461 0,406 -chrI 72656 73454 HC_gene_0031_tx_133 122 + 72656 73454 . 1 799 0 -chrI 72737 73454 HC_gene_0031_tx_134 1 + 72737 73454 . 2 46,487 0,231 -chrI 72798 73454 HC_gene_0031_tx_135 1184 + 72798 73454 . 1 657 0 -chrI 72798 73454 HC_gene_0031_tx_136 1 + 72798 73454 . 2 27,449 0,208 -chrI 72798 73454 HC_gene_0031_tx_137 1 + 72798 73454 . 2 480,57 0,600 -chrI 72798 73454 HC_gene_0031_tx_138 1 + 72798 73454 . 2 520,57 0,600 -chrI 72798 73454 HC_gene_0031_tx_139 1 + 72798 73454 . 2 517,57 0,600 -chrI 72798 73454 HC_gene_0031_tx_140 1 + 72798 73454 . 2 462,117 0,540 -chrI 72798 73454 HC_gene_0031_tx_141 1 + 72798 73454 . 2 496,57 0,600 -chrI 72798 73454 HC_gene_0031_tx_142 1 + 72798 73454 . 2 135,461 0,196 -chrI 72798 73454 HC_gene_0031_tx_143 1 + 72798 73454 . 2 480,117 0,540 -chrI 72798 73454 HC_gene_0031_tx_144 1 + 72798 73454 . 2 468,120 0,537 -chrI 72798 73454 HC_gene_0031_tx_145 1 + 72798 73454 . 2 438,112 0,545 -chrI 72798 73454 HC_gene_0031_tx_146 1 + 72798 73454 . 2 468,112 0,545 -chrI 72968 73454 HC_gene_0031_tx_147 1314 + 72968 73454 . 1 487 0 -chrI 73616 74807 LC_gene_0098_tx_1 1 - 73616 74807 . 1 1192 0 -chrI 73920 74911 HC_gene_0032_tx_1 4 + 73920 74911 . 1 992 0 -chrI 74845 75519 HC_gene_0099_tx_1 22 - 74845 75519 . 1 675 0 -chrI 74845 75519 HC_gene_0099_tx_2 1 - 74845 75519 . 2 490,129 0,546 -chrI 74845 75643 HC_gene_0099_tx_3 7 - 74845 75643 . 1 799 0 -chrI 74845 75819 HC_gene_0099_tx_4 6 - 74845 75819 . 1 975 0 -chrI 74845 75819 HC_gene_0099_tx_5 1 - 74845 75819 . 2 392,527 0,448 -chrI 74845 75947 HC_gene_0099_tx_6 9 - 74845 75947 . 1 1103 0 -chrI 74845 76184 HC_gene_0099_tx_7 74 - 74845 76184 . 1 1340 0 -chrI 74942 75643 HC_gene_0099_tx_8 2 - 74942 75643 . 1 702 0 -chrI 74942 75819 HC_gene_0099_tx_9 3 - 74942 75819 . 1 878 0 -chrI 74942 76184 HC_gene_0099_tx_10 28 - 74942 76184 . 1 1243 0 -chrI 74942 76184 HC_gene_0099_tx_11 1 - 74942 76184 . 2 972,192 0,1051 -chrI 76400 79562 HC_gene_0033_tx_1 83 + 76400 79562 . 1 3163 0 -chrI 76400 79562 HC_gene_0033_tx_2 1 + 76400 79562 . 2 550,2511 0,652 -chrI 76400 79562 HC_gene_0033_tx_3 1 + 76400 79562 . 2 82,2707 0,456 -chrI 76400 79562 HC_gene_0033_tx_4 1 + 76400 79562 . 2 522,2484 0,679 -chrI 76400 79562 HC_gene_0033_tx_5 1 + 76400 79562 . 2 288,2764 0,399 -chrI 76400 79562 HC_gene_0033_tx_6 1 + 76400 79562 . 2 230,2484 0,679 -chrI 76400 79562 HC_gene_0033_tx_7 1 + 76400 79562 . 2 1227,1875 0,1288 -chrI 76400 79562 HC_gene_0033_tx_8 1 + 76400 79562 . 2 516,2476 0,687 -chrI 76400 79562 HC_gene_0033_tx_9 1 + 76400 79562 . 2 1158,1952 0,1211 -chrI 76400 79562 HC_gene_0033_tx_10 1 + 76400 79562 . 2 135,2458 0,705 -chrI 76400 79562 HC_gene_0033_tx_11 1 + 76400 79562 . 2 2203,746 0,2417 -chrI 76400 79562 HC_gene_0033_tx_12 1 + 76400 79562 . 2 2430,553 0,2610 -chrI 76400 79562 HC_gene_0033_tx_13 1 + 76400 79562 . 2 1984,854 0,2309 -chrI 76400 79562 HC_gene_0033_tx_14 1 + 76400 79562 . 2 429,2420 0,743 -chrI 76400 79562 HC_gene_0033_tx_15 1 + 76400 79562 . 2 1289,1777 0,1386 -chrI 76400 79562 HC_gene_0033_tx_16 1 + 76400 79562 . 2 1860,1225 0,1938 -chrI 76400 79562 HC_gene_0033_tx_17 1 + 76400 79562 . 2 1477,1618 0,1545 -chrI 76400 79562 HC_gene_0033_tx_18 1 + 76400 79562 . 2 1862,969 0,2194 -chrI 77031 79562 HC_gene_0033_tx_19 32 + 77031 79562 . 1 2532 0 -chrI 77031 79562 HC_gene_0033_tx_20 1 + 77031 79562 . 2 308,1869 0,663 -chrI 77031 79562 HC_gene_0033_tx_21 1 + 77031 79562 . 2 1980,462 0,2070 -chrI 77186 79562 HC_gene_0033_tx_22 4 + 77186 79562 . 1 2377 0 -chrI 77292 79562 HC_gene_0033_tx_23 1 + 77292 79562 . 2 123,2049 0,222 -chrI 77432 79562 HC_gene_0033_tx_24 50 + 77432 79562 . 1 2131 0 -chrI 77432 79562 HC_gene_0033_tx_25 1 + 77432 79562 . 2 1069,685 0,1446 -chrI 77432 79562 HC_gene_0033_tx_26 1 + 77432 79562 . 2 117,1932 0,199 -chrI 77432 79562 HC_gene_0033_tx_27 1 + 77432 79562 . 2 1282,783 0,1348 -chrI 77511 79562 HC_gene_0033_tx_28 12 + 77511 79562 . 1 2052 0 -chrI 78351 79562 HC_gene_0033_tx_29 19 + 78351 79562 . 1 1212 0 -chrI 78687 79562 HC_gene_0033_tx_30 23 + 78687 79562 . 1 876 0 -chrI 78795 79562 HC_gene_0033_tx_31 43 + 78795 79562 . 1 768 0 -chrI 78795 79562 HC_gene_0033_tx_32 1 + 78795 79562 . 2 248,94 0,674 -chrI 79688 80745 HC_gene_0034_tx_1 1 + 79688 80745 . 1 1058 0 -chrI 80566 81431 HC_gene_0100_tx_1 3 - 80566 81431 . 1 866 0 -chrI 80566 81512 HC_gene_0100_tx_2 6 - 80566 81512 . 1 947 0 -chrI 80566 81841 HC_gene_0100_tx_3 2 - 80566 81841 . 1 1276 0 -chrI 80566 81983 HC_gene_0100_tx_4 5 - 80566 81983 . 1 1418 0 -chrI 80566 82563 HC_gene_0100_tx_7 1 - 80566 82563 . 2 1365,519 0,1479 -chrI 80566 82563 HC_gene_0100_tx_8 11 - 80566 82563 . 1 1998 0 -chrI 80670 81841 HC_gene_0100_tx_5 1 - 80670 81841 . 1 1172 0 -chrI 80670 81983 HC_gene_0100_tx_6 2 - 80670 81983 . 1 1314 0 -chrI 82260 82589 MC_gene_0035_tx_1 1 + 82260 82589 . 1 330 0 -chrI 82700 83304 HC_gene_0036_tx_1 102 + 82700 83304 . 1 605 0 -chrI 82956 83304 HC_gene_0036_tx_2 11 + 82956 83304 . 1 349 0 -chrI 83210 84008 HC_gene_0101_tx_1 3 - 83210 84008 . 1 799 0 -chrI 83210 84171 HC_gene_0101_tx_2 5 - 83210 84171 . 1 962 0 -chrI 83210 84495 HC_gene_0101_tx_3 16 - 83210 84495 . 1 1286 0 -chrI 84252 85460 LC_gene_0037_tx_1 1 + 84252 85460 . 1 1209 0 -chrI 84586 85439 HC_gene_0102_tx_1 1 - 84586 85439 . 1 854 0 -chrI 84586 85570 HC_gene_0102_tx_2 2 - 84586 85570 . 1 985 0 -chrI 84586 87079 HC_gene_0102_tx_3 1 - 84586 87079 . 2 1827,295 0,2199 -chrI 84586 87079 HC_gene_0102_tx_4 3 - 84586 87079 . 1 2494 0 -chrI 84586 87079 HC_gene_0102_tx_5 1 - 84586 87079 . 2 1424,581 0,1913 -chrI 84586 87079 HC_gene_0102_tx_6 1 - 84586 87079 . 2 1043,1338 0,1156 -chrI 84586 87079 HC_gene_0102_tx_7 1 - 84586 87079 . 2 1063,1384 0,1110 -chrI 87263 87857 HC_gene_0038_tx_1 130 + 87263 87857 . 2 125,357 0,238 -chrI 87263 87857 HC_gene_0038_tx_2 6 + 87263 87857 . 1 595 0 -chrI 87263 87857 HC_gene_0038_tx_3 1 + 87263 87857 . 2 116,357 0,238 -chrI 87263 87857 HC_gene_0038_tx_4 1 + 87263 87857 . 2 116,350 0,245 -chrI 87263 87857 HC_gene_0038_tx_5 2 + 87263 87857 . 2 129,357 0,238 -chrI 87263 87857 HC_gene_0038_tx_6 1 + 87263 87857 . 2 108,343 0,252 -chrI 87263 87857 HC_gene_0038_tx_7 2 + 87263 87857 . 2 123,343 0,252 -chrI 87263 87857 HC_gene_0038_tx_8 1 + 87263 87857 . 2 108,365 0,230 -chrI 87263 87857 HC_gene_0038_tx_9 1 + 87263 87857 . 2 125,368 0,227 -chrI 87263 87857 HC_gene_0038_tx_10 1 + 87263 87857 . 2 111,357 0,238 -chrI 87689 89331 HC_gene_0103_tx_1 7 - 87689 89331 . 1 1643 0 -chrI 87689 89474 HC_gene_0103_tx_2 6 - 87689 89474 . 1 1786 0 -chrI 87689 89803 HC_gene_0103_tx_3 2 - 87689 89803 . 1 2115 0 -chrI 87689 91538 HC_gene_0103_tx_4 1 - 87689 91538 . 1 3850 0 -chrI 87689 92146 HC_gene_0103_tx_5 1 - 87689 92146 . 1 4458 0 -chrI 87689 92262 HC_gene_0103_tx_6 1 - 87689 92262 . 1 4574 0 -chrI 87689 92523 HC_gene_0103_tx_7 4 - 87689 92523 . 1 4835 0 -chrI 87689 92523 HC_gene_0103_tx_8 1 - 87689 92523 . 2 3332,1462 0,3373 -chrI 88300 89474 HC_gene_0103_tx_9 1 - 88300 89474 . 2 44,654 0,521 -chrI 92858 94530 HC_gene_0039_tx_1 19 + 92858 94530 . 1 1673 0 -chrI 92858 94530 HC_gene_0039_tx_2 1 + 92858 94530 . 2 543,964 0,709 -chrI 92974 94530 HC_gene_0039_tx_3 1 + 92974 94530 . 1 1557 0 -chrI 94606 95579 HC_gene_0040_tx_1 26 + 94606 95579 . 1 974 0 -chrI 95172 95579 HC_gene_0040_tx_2 16 + 95172 95579 . 1 408 0 -chrI 95481 95852 HC_gene_0104_tx_1 14 - 95481 95852 . 1 372 0 -chrI 95481 96294 HC_gene_0104_tx_2 6 - 95481 96294 . 1 814 0 -chrI 95481 97700 HC_gene_0104_tx_3 4 - 95481 97700 . 1 2220 0 -chrI 95481 99165 HC_gene_0104_tx_4 1 - 95481 99165 . 1 3685 0 -chrI 95481 99370 HC_gene_0104_tx_5 1 - 95481 99370 . 3 1828,913,200 0,2690,3690 -chrI 95481 99565 HC_gene_0104_tx_6 1 - 95481 99565 . 1 4085 0 -chrI 95481 99784 HC_gene_0104_tx_7 5 - 95481 99784 . 1 4304 0 -chrI 99457 100121 LC_gene_0041_tx_1 1 + 99457 100121 . 1 665 0 -chrI 100039 100502 HC_gene_0105_tx_1 36 - 100039 100502 . 1 464 0 -chrI 100039 100626 HC_gene_0105_tx_2 31 - 100039 100626 . 1 588 0 -chrI 100039 100692 HC_gene_0105_tx_3 11 - 100039 100692 . 1 654 0 -chrI 100039 100757 HC_gene_0105_tx_4 31 - 100039 100757 . 1 719 0 -chrI 100039 100881 HC_gene_0105_tx_5 20 - 100039 100881 . 1 843 0 -chrI 100039 100881 HC_gene_0105_tx_6 1 - 100039 100881 . 2 507,250 0,593 -chrI 100039 101169 HC_gene_0105_tx_7 158 - 100039 101169 . 1 1131 0 -chrI 100039 101169 HC_gene_0105_tx_8 1 - 100039 101169 . 2 600,48 0,1083 -chrI 100039 101169 HC_gene_0105_tx_9 1 - 100039 101169 . 2 894,127 0,1004 -chrI 100039 101169 HC_gene_0105_tx_10 1 - 100039 101169 . 2 325,753 0,378 -chrI 100039 101169 HC_gene_0105_tx_11 1 - 100039 101169 . 2 450,581 0,550 -chrI 100039 101169 HC_gene_0105_tx_12 1 - 100039 101169 . 2 743,203 0,928 -chrI 101368 105967 HC_gene_0106_tx_1 1 - 101368 105967 . 1 4600 0 -chrI 106141 106423 HC_gene_0107_tx_1 34 - 106141 106423 . 1 283 0 -chrI 106141 106598 HC_gene_0107_tx_2 37 - 106141 106598 . 1 458 0 -chrI 106141 107227 HC_gene_0107_tx_3 17 - 106141 107227 . 1 1087 0 -chrI 106141 107794 HC_gene_0107_tx_4 9 - 106141 107794 . 1 1654 0 -chrI 106141 107794 HC_gene_0107_tx_5 1 - 106141 107794 . 2 779,750 0,904 -chrI 106141 108624 HC_gene_0107_tx_6 71 - 106141 108624 . 1 2484 0 -chrI 106141 108624 HC_gene_0107_tx_7 1 - 106141 108624 . 2 1468,459 0,2025 -chrI 106141 108624 HC_gene_0107_tx_8 1 - 106141 108624 . 2 1914,78 0,2406 -chrI 108834 110447 HC_gene_0108_tx_1 23 - 108834 110447 . 1 1614 0 -chrI 108834 110447 HC_gene_0108_tx_2 1 - 108834 110447 . 2 796,755 0,859 -chrI 110202 111050 MC_gene_0042_tx_1 1 + 110202 111050 . 1 849 0 -chrI 110613 110973 HC_gene_0109_tx_1 4 - 110613 110973 . 1 361 0 -chrI 110613 112844 HC_gene_0109_tx_2 3 - 110613 112844 . 1 2232 0 -chrI 110613 113216 HC_gene_0109_tx_3 2 - 110613 113216 . 1 2604 0 -chrI 110613 113403 HC_gene_0109_tx_4 11 - 110613 113403 . 1 2791 0 -chrI 110613 113403 HC_gene_0109_tx_5 1 - 110613 113403 . 2 2174,539 0,2252 -chrI 110764 110973 HC_gene_0109_tx_9 2 - 110764 110973 . 1 210 0 -chrI 110764 112844 HC_gene_0109_tx_6 1 - 110764 112844 . 1 2081 0 -chrI 110764 113216 HC_gene_0109_tx_7 1 - 110764 113216 . 1 2453 0 -chrI 110764 113403 HC_gene_0109_tx_8 2 - 110764 113403 . 1 2640 0 -chrI 113534 114620 HC_gene_0110_tx_1 48 - 113534 114620 . 1 1087 0 -chrI 114808 118397 HC_gene_0043_tx_1 2 + 114808 118397 . 1 3590 0 -chrI 114808 118397 HC_gene_0043_tx_2 1 + 114808 118397 . 2 1243,1633 0,1957 -chrI 114808 118397 HC_gene_0043_tx_3 1 + 114808 118397 . 2 179,2387 0,1203 -chrI 114808 118397 HC_gene_0043_tx_4 1 + 114808 118397 . 2 479,2228 0,1362 -chrI 115195 118397 HC_gene_0043_tx_5 1 + 115195 118397 . 1 3203 0 -chrI 118426 119576 MC_gene_0111_tx_1 1 - 118426 119576 . 1 1151 0 -chrI 119077 119703 LC_gene_0044_tx_1 1 + 119077 119703 . 1 627 0 -chrI 119857 124497 HC_gene_0045_tx_1 3 + 119857 124497 . 1 4641 0 -chrI 120279 124497 HC_gene_0045_tx_2 1 + 120279 124497 . 1 4219 0 -chrI 123532 124497 HC_gene_0045_tx_3 1 + 123532 124497 . 1 966 0 -chrI 124781 126870 HC_gene_0046_tx_1 44 + 124781 126870 . 1 2090 0 -chrI 125071 126870 HC_gene_0046_tx_2 2 + 125071 126870 . 1 1800 0 -chrI 125152 126870 HC_gene_0046_tx_3 3 + 125152 126870 . 1 1719 0 -chrI 125564 126870 HC_gene_0046_tx_4 9 + 125564 126870 . 1 1307 0 -chrI 125564 126870 HC_gene_0046_tx_5 1 + 125564 126870 . 2 125,671 0,636 -chrI 125763 126870 HC_gene_0046_tx_6 6 + 125763 126870 . 1 1108 0 -chrI 125763 126870 HC_gene_0046_tx_7 1 + 125763 126870 . 2 388,628 0,480 -chrI 126753 127212 HC_gene_0112_tx_1 15 - 126753 127212 . 1 460 0 -chrI 126753 127576 HC_gene_0112_tx_2 8 - 126753 127576 . 1 824 0 -chrI 126753 127911 HC_gene_0112_tx_3 7 - 126753 127911 . 1 1159 0 -chrI 126753 128103 HC_gene_0112_tx_4 21 - 126753 128103 . 1 1351 0 -chrI 127386 128190 LC_gene_0047_tx_1 1 + 127386 128190 . 1 805 0 -chrI 128079 128988 HC_gene_0113_tx_1 1 - 128079 128988 . 1 910 0 -chrI 128079 129016 HC_gene_0113_tx_2 1 - 128079 129016 . 1 938 0 -chrI 128079 129024 HC_gene_0113_tx_3 1 - 128079 129024 . 1 946 0 -chrI 128079 129025 HC_gene_0113_tx_4 1 - 128079 129025 . 1 947 0 -chrI 128079 129027 HC_gene_0113_tx_5 2 - 128079 129027 . 1 949 0 -chrI 128079 129031 HC_gene_0113_tx_6 1 - 128079 129031 . 1 953 0 -chrI 128079 129040 HC_gene_0113_tx_7 1 - 128079 129040 . 1 962 0 -chrI 128079 129041 HC_gene_0113_tx_8 1 - 128079 129041 . 1 963 0 -chrI 128079 129043 HC_gene_0113_tx_9 1 - 128079 129043 . 1 965 0 -chrI 128079 129047 HC_gene_0113_tx_10 2 - 128079 129047 . 1 969 0 -chrI 128079 129051 HC_gene_0113_tx_11 27 - 128079 129051 . 1 973 0 -chrI 128079 129051 HC_gene_0113_tx_12 1 - 128079 129051 . 2 443,30 0,943 -chrI 128079 129051 HC_gene_0113_tx_13 1 - 128079 129051 . 2 752,163 0,810 -chrI 128079 129052 HC_gene_0113_tx_14 1 - 128079 129052 . 1 974 0 -chrI 128079 129059 HC_gene_0113_tx_15 2 - 128079 129059 . 1 981 0 -chrI 128079 129060 HC_gene_0113_tx_16 2 - 128079 129060 . 1 982 0 -chrI 128079 129087 HC_gene_0113_tx_17 1 - 128079 129087 . 1 1009 0 -chrI 128207 129051 HC_gene_0113_tx_18 16 - 128207 129051 . 1 845 0 -chrI 129237 130589 HC_gene_0048_tx_1 32 + 129237 130589 . 1 1353 0 -chrI 129237 130589 HC_gene_0048_tx_2 1 + 129237 130589 . 2 196,1093 0,260 -chrI 129237 130589 HC_gene_0048_tx_3 1 + 129237 130589 . 2 512,681 0,672 -chrI 129237 130589 HC_gene_0048_tx_4 1 + 129237 130589 . 2 292,760 0,593 -chrI 129248 130589 HC_gene_0048_tx_5 1 + 129248 130589 . 2 221,778 0,564 -chrI 129450 130589 HC_gene_0048_tx_6 9 + 129450 130589 . 1 1140 0 -chrI 129570 130589 HC_gene_0048_tx_7 10 + 129570 130589 . 1 1020 0 -chrI 129694 130589 HC_gene_0048_tx_8 18 + 129694 130589 . 1 896 0 -chrI 130699 131133 MC_gene_0114_tx_1 1 - 130699 131133 . 1 435 0 -chrI 130734 132084 HC_gene_0049_tx_1 465 + 130734 132084 . 1 1351 0 -chrI 130734 132084 HC_gene_0049_tx_2 1 + 130734 132084 . 2 813,463 0,888 -chrI 130734 132084 HC_gene_0049_tx_3 1 + 130734 132084 . 2 325,540 0,811 -chrI 130734 132084 HC_gene_0049_tx_4 1 + 130734 132084 . 2 570,592 0,759 -chrI 130734 132084 HC_gene_0049_tx_5 1 + 130734 132084 . 2 95,889 0,462 -chrI 130734 132084 HC_gene_0049_tx_6 1 + 130734 132084 . 2 1074,177 0,1174 -chrI 130734 132084 HC_gene_0049_tx_7 1 + 130734 132084 . 2 774,517 0,834 -chrI 130734 132084 HC_gene_0049_tx_8 1 + 130734 132084 . 2 913,386 0,965 -chrI 130860 132084 HC_gene_0049_tx_9 56 + 130860 132084 . 1 1225 0 -chrI 130860 132084 HC_gene_0049_tx_10 1 + 130860 132084 . 2 188,932 0,293 -chrI 131018 132084 HC_gene_0049_tx_11 24 + 131018 132084 . 1 1067 0 -chrI 131018 132084 HC_gene_0049_tx_12 1 + 131018 132084 . 2 174,819 0,248 -chrI 131018 132084 HC_gene_0049_tx_13 1 + 131018 132084 . 2 694,303 0,764 -chrI 131114 132084 HC_gene_0049_tx_14 134 + 131114 132084 . 1 971 0 -chrI 131114 132084 HC_gene_0049_tx_15 1 + 131114 132084 . 2 230,678 0,293 -chrI 131281 132084 HC_gene_0049_tx_16 115 + 131281 132084 . 1 804 0 -chrI 131717 132084 HC_gene_0049_tx_17 98 + 131717 132084 . 1 368 0 -chrI 132195 134174 HC_gene_0050_tx_1 4 + 132195 134174 . 1 1980 0 -chrI 134074 135703 HC_gene_0115_tx_1 9 - 134074 135703 . 1 1630 0 -chrI 135828 136760 HC_gene_0051_tx_1 39 + 135828 136760 . 1 933 0 -chrI 136105 136760 HC_gene_0051_tx_2 9 + 136105 136760 . 1 656 0 -chrI 136335 136760 HC_gene_0051_tx_3 10 + 136335 136760 . 1 426 0 -chrI 136558 136760 HC_gene_0051_tx_4 4 + 136558 136760 . 1 203 0 -chrI 136814 137249 LC_gene_0116_tx_1 1 - 136814 137249 . 1 436 0 -chrI 136873 137645 HC_gene_0052_tx_1 130 + 136873 137645 . 1 773 0 -chrI 136961 137645 HC_gene_0052_tx_2 3 + 136961 137645 . 1 685 0 -chrI 137044 137645 HC_gene_0052_tx_3 5 + 137044 137645 . 1 602 0 -chrI 137173 137645 HC_gene_0052_tx_4 31 + 137173 137645 . 1 473 0 -chrI 137273 137645 HC_gene_0052_tx_5 12 + 137273 137645 . 1 373 0 -chrI 137521 138048 HC_gene_0117_tx_1 6 - 137521 138048 . 1 528 0 -chrI 137521 138153 HC_gene_0117_tx_2 32 - 137521 138153 . 1 633 0 -chrI 137521 138417 HC_gene_0117_tx_4 160 - 137521 138417 . 1 897 0 -chrI 137630 138048 HC_gene_0117_tx_6 3 - 137630 138048 . 1 419 0 -chrI 137630 138153 HC_gene_0117_tx_3 8 - 137630 138153 . 1 524 0 -chrI 137630 138417 HC_gene_0117_tx_5 68 - 137630 138417 . 1 788 0 -chrI 138668 139023 MC_gene_0118_tx_1 1 - 138668 139023 . 1 356 0 -chrI 139331 140236 HC_gene_0119_tx_1 85 - 139331 140236 . 1 906 0 -chrI 139331 140471 HC_gene_0119_tx_2 65 - 139331 140471 . 1 1141 0 -chrI 139331 140471 HC_gene_0119_tx_3 1 - 139331 140471 . 2 73,1016 0,125 -chrI 139331 140687 HC_gene_0119_tx_4 79 - 139331 140687 . 1 1357 0 -chrI 139331 140687 HC_gene_0119_tx_5 1 - 139331 140687 . 2 73,1232 0,125 -chrI 139331 140687 HC_gene_0119_tx_6 1 - 139331 140687 . 2 469,818 0,539 -chrI 139331 140687 HC_gene_0119_tx_7 1 - 139331 140687 . 2 714,417 0,940 -chrI 139331 140687 HC_gene_0119_tx_8 1 - 139331 140687 . 2 576,451 0,906 -chrI 139331 141475 HC_gene_0119_tx_9 1 - 139331 141475 . 2 801,1254 0,891 -chrI 139331 141479 HC_gene_0119_tx_10 1 - 139331 141479 . 2 801,1261 0,888 -chrI 139331 141494 HC_gene_0119_tx_11 512 - 139331 141494 . 1 2164 0 -chrI 139331 141494 HC_gene_0119_tx_12 1 - 139331 141494 . 2 812,881 0,1283 -chrI 139331 141494 HC_gene_0119_tx_13 1 - 139331 141494 . 2 1558,454 0,1710 -chrI 139331 141494 HC_gene_0119_tx_14 1 - 139331 141494 . 2 657,1438 0,726 -chrI 139331 141494 HC_gene_0119_tx_15 1 - 139331 141494 . 2 947,1138 0,1026 -chrI 139331 141494 HC_gene_0119_tx_16 1 - 139331 141494 . 2 1033,871 0,1293 -chrI 139331 141494 HC_gene_0119_tx_17 1 - 139331 141494 . 2 945,757 0,1407 -chrI 139331 141494 HC_gene_0119_tx_18 1 - 139331 141494 . 2 104,2000 0,164 -chrI 139331 141494 HC_gene_0119_tx_19 1 - 139331 141494 . 2 1099,121 0,2043 -chrI 139331 141494 HC_gene_0119_tx_20 1 - 139331 141494 . 2 240,1755 0,409 -chrI 139331 141494 HC_gene_0119_tx_21 1 - 139331 141494 . 2 981,1132 0,1032 -chrI 139331 141494 HC_gene_0119_tx_22 1 - 139331 141494 . 2 863,1258 0,906 -chrI 139451 141609 LC_gene_0053_tx_1 1 + 139451 141609 . 1 2159 0 -chrI 141948 143383 HC_gene_0054_tx_1 5 + 141948 143383 . 2 306,764 0,672 -chrI 142152 142361 HC_gene_0054_tx_53 2 + 142152 142361 . 1 210 0 -chrI 142152 142469 HC_gene_0054_tx_55 1 + 142152 142469 . 1 318 0 -chrI 142152 143296 HC_gene_0054_tx_2 20 + 142152 143296 . 2 102,677 0,468 -chrI 142152 143296 HC_gene_0054_tx_3 1 + 142152 143296 . 2 102,660 0,485 -chrI 142152 143296 HC_gene_0054_tx_4 1 + 142152 143296 . 2 65,439 0,706 -chrI 142152 143296 HC_gene_0054_tx_5 1 + 142152 143296 . 1 1145 0 -chrI 142152 143297 HC_gene_0054_tx_6 3 + 142152 143297 . 2 102,678 0,468 -chrI 142152 143298 HC_gene_0054_tx_7 8 + 142152 143298 . 2 102,679 0,468 -chrI 142152 143299 HC_gene_0054_tx_8 9 + 142152 143299 . 2 102,680 0,468 -chrI 142152 143299 HC_gene_0054_tx_9 1 + 142152 143299 . 2 102,670 0,478 -chrI 142152 143300 HC_gene_0054_tx_10 10 + 142152 143300 . 2 102,681 0,468 -chrI 142152 143301 HC_gene_0054_tx_11 4 + 142152 143301 . 2 102,682 0,468 -chrI 142152 143302 HC_gene_0054_tx_12 1 + 142152 143302 . 2 102,683 0,468 -chrI 142152 143304 HC_gene_0054_tx_13 1 + 142152 143304 . 2 102,685 0,468 -chrI 142152 143304 HC_gene_0054_tx_14 1 + 142152 143304 . 2 94,685 0,468 -chrI 142152 143305 HC_gene_0054_tx_15 1 + 142152 143305 . 2 102,686 0,468 -chrI 142152 143306 HC_gene_0054_tx_16 3 + 142152 143306 . 2 102,687 0,468 -chrI 142152 143307 HC_gene_0054_tx_17 1 + 142152 143307 . 2 102,688 0,468 -chrI 142152 143308 HC_gene_0054_tx_18 1 + 142152 143308 . 2 102,689 0,468 -chrI 142152 143309 HC_gene_0054_tx_19 1 + 142152 143309 . 2 102,690 0,468 -chrI 142152 143310 HC_gene_0054_tx_20 4 + 142152 143310 . 2 102,691 0,468 -chrI 142152 143383 HC_gene_0054_tx_21 1966 + 142152 143383 . 2 102,764 0,468 -chrI 142152 143383 HC_gene_0054_tx_22 1 + 142152 143383 . 3 104,506,206 0,471,1026 -chrI 142152 143383 HC_gene_0054_tx_23 43 + 142152 143383 . 1 1232 0 -chrI 142152 143383 HC_gene_0054_tx_24 1 + 142152 143383 . 2 94,761 0,471 -chrI 142152 143383 HC_gene_0054_tx_25 3 + 142152 143383 . 2 106,764 0,468 -chrI 142152 143383 HC_gene_0054_tx_26 8 + 142152 143383 . 2 102,747 0,485 -chrI 142152 143383 HC_gene_0054_tx_27 3 + 142152 143383 . 2 94,764 0,468 -chrI 142152 143383 HC_gene_0054_tx_28 7 + 142152 143383 . 2 80,761 0,471 -chrI 142152 143383 HC_gene_0054_tx_29 1 + 142152 143383 . 2 160,750 0,482 -chrI 142152 143383 HC_gene_0054_tx_30 3 + 142152 143383 . 2 122,737 0,495 -chrI 142152 143383 HC_gene_0054_tx_31 2 + 142152 143383 . 2 102,645 0,587 -chrI 142152 143383 HC_gene_0054_tx_32 1 + 142152 143383 . 2 97,761 0,471 -chrI 142152 143383 HC_gene_0054_tx_33 1 + 142152 143383 . 3 102,592,107 0,468,1125 -chrI 142152 143383 HC_gene_0054_tx_34 1 + 142152 143383 . 2 102,742 0,490 -chrI 142152 143383 HC_gene_0054_tx_35 1 + 142152 143383 . 2 80,364 0,868 -chrI 142152 143383 HC_gene_0054_tx_36 1 + 142152 143383 . 2 102,705 0,527 -chrI 142152 143383 HC_gene_0054_tx_37 1 + 142152 143383 . 2 102,781 0,451 -chrI 142152 143383 HC_gene_0054_tx_38 1 + 142152 143383 . 2 102,753 0,479 -chrI 142152 143383 HC_gene_0054_tx_39 1 + 142152 143383 . 2 80,801 0,431 -chrI 142152 143383 HC_gene_0054_tx_40 1 + 142152 143383 . 2 87,737 0,495 -chrI 142152 143383 HC_gene_0054_tx_41 2 + 142152 143383 . 2 91,764 0,468 -chrI 142152 143383 HC_gene_0054_tx_42 1 + 142152 143383 . 2 74,618 0,614 -chrI 142152 143383 HC_gene_0054_tx_43 1 + 142152 143383 . 2 160,761 0,471 -chrI 142152 143383 HC_gene_0054_tx_44 2 + 142152 143383 . 2 87,764 0,468 -chrI 142152 143383 HC_gene_0054_tx_45 1 + 142152 143383 . 2 87,547 0,685 -chrI 142152 143383 HC_gene_0054_tx_46 1 + 142152 143383 . 3 102,521,185 0,468,1047 -chrI 142152 143383 HC_gene_0054_tx_47 1 + 142152 143383 . 2 91,761 0,471 -chrI 142152 143383 HC_gene_0054_tx_48 1 + 142152 143383 . 2 131,615 0,617 -chrI 142152 143383 HC_gene_0054_tx_49 1 + 142152 143383 . 2 83,771 0,461 -chrI 142157 142361 HC_gene_0054_tx_54 1 + 142157 142361 . 1 205 0 -chrI 142367 143304 HC_gene_0054_tx_50 1 + 142367 143304 . 1 938 0 -chrI 142367 143383 HC_gene_0054_tx_51 24 + 142367 143383 . 1 1017 0 -chrI 142430 143383 HC_gene_0054_tx_52 12 + 142430 143383 . 1 954 0 -chrI 142669 143296 HC_gene_0054_tx_56 7 + 142669 143296 . 1 628 0 -chrI 142669 143297 HC_gene_0054_tx_57 1 + 142669 143297 . 1 629 0 -chrI 142669 143298 HC_gene_0054_tx_58 2 + 142669 143298 . 1 630 0 -chrI 142669 143299 HC_gene_0054_tx_59 2 + 142669 143299 . 1 631 0 -chrI 142669 143300 HC_gene_0054_tx_60 8 + 142669 143300 . 1 632 0 -chrI 142669 143301 HC_gene_0054_tx_61 1 + 142669 143301 . 1 633 0 -chrI 142669 143304 HC_gene_0054_tx_62 1 + 142669 143304 . 1 636 0 -chrI 142669 143307 HC_gene_0054_tx_63 1 + 142669 143307 . 1 639 0 -chrI 142669 143308 HC_gene_0054_tx_64 2 + 142669 143308 . 1 640 0 -chrI 142669 143310 HC_gene_0054_tx_65 6 + 142669 143310 . 1 642 0 -chrI 142669 143311 HC_gene_0054_tx_66 1 + 142669 143311 . 1 643 0 -chrI 142669 143383 HC_gene_0054_tx_67 1088 + 142669 143383 . 1 715 0 -chrI 142669 143383 HC_gene_0054_tx_68 1 + 142669 143383 . 2 217,376 0,339 -chrI 142715 143383 HC_gene_0054_tx_69 1 + 142715 143383 . 2 414,192 0,477 -chrI 143111 143298 HC_gene_0054_tx_70 1 + 143111 143298 . 1 188 0 -chrI 143111 143383 HC_gene_0054_tx_71 202 + 143111 143383 . 1 273 0 -chrI 143617 147588 HC_gene_0055_tx_1 3 + 143617 147588 . 1 3972 0 -chrI 143623 144079 LC_gene_0120_tx_1 1 - 143623 144079 . 1 457 0 -chrI 147513 149194 HC_gene_0121_tx_1 1 - 147513 149194 . 1 1682 0 -chrI 147513 149374 HC_gene_0121_tx_2 1 - 147513 149374 . 1 1862 0 -chrI 147513 149447 HC_gene_0121_tx_3 3 - 147513 149447 . 1 1935 0 -chrI 147513 149914 HC_gene_0121_tx_4 3 - 147513 149914 . 1 2402 0 -chrI 147513 150492 HC_gene_0121_tx_5 1 - 147513 150492 . 1 2980 0 -chrI 147513 150546 HC_gene_0121_tx_6 1 - 147513 150546 . 1 3034 0 -chrI 147513 150983 HC_gene_0121_tx_7 1 - 147513 150983 . 1 3471 0 -chrI 147513 151204 HC_gene_0121_tx_8 1 - 147513 151204 . 2 1337,2300 0,1392 -chrI 147513 151204 HC_gene_0121_tx_9 4 - 147513 151204 . 1 3692 0 -chrI 147513 151204 HC_gene_0121_tx_10 4 - 147513 151204 . 2 3494,108 0,3584 -chrI 147513 151204 HC_gene_0121_tx_11 1 - 147513 151204 . 2 719,2378 0,1314 -chrI 151603 151934 LC_gene_0122_tx_1 1 - 151603 151934 . 1 332 0 -chrI 151808 152195 MC_gene_0056_tx_1 1 + 151808 152195 . 1 388 0 -chrI 152215 152982 HC_gene_0057_tx_1 1 + 152215 152982 . 1 768 0 -chrI 152215 153971 HC_gene_0057_tx_2 34 + 152215 153971 . 1 1757 0 -chrI 152215 153971 HC_gene_0057_tx_3 1 + 152215 153971 . 2 655,426 0,1331 -chrI 152215 154067 HC_gene_0057_tx_4 1 + 152215 154067 . 1 1853 0 -chrI 152543 153971 HC_gene_0057_tx_5 5 + 152543 153971 . 1 1429 0 -chrI 153984 154379 HC_gene_0123_tx_1 39 - 153984 154379 . 1 396 0 -chrI 153984 154442 HC_gene_0123_tx_2 20 - 153984 154442 . 1 459 0 -chrI 153984 154661 HC_gene_0123_tx_3 22 - 153984 154661 . 1 678 0 -chrI 153984 154741 HC_gene_0123_tx_4 296 - 153984 154741 . 1 758 0 -chrI 154957 156011 HC_gene_0058_tx_1 3 + 154957 156011 . 1 1055 0 -chrI 154957 156781 HC_gene_0058_tx_2 15 + 154957 156781 . 1 1825 0 -chrI 154957 156864 HC_gene_0058_tx_3 4 + 154957 156864 . 1 1908 0 -chrI 154957 156864 HC_gene_0058_tx_4 1 + 154957 156864 . 2 341,1417 0,491 -chrI 155609 156721 LC_gene_0124_tx_1 1 - 155609 156721 . 1 1113 0 -chrI 155944 156781 HC_gene_0058_tx_5 3 + 155944 156781 . 1 838 0 -chrI 155944 156864 HC_gene_0058_tx_6 4 + 155944 156864 . 1 921 0 -chrI 156013 156781 HC_gene_0058_tx_7 5 + 156013 156781 . 1 769 0 -chrI 156013 156864 HC_gene_0058_tx_8 3 + 156013 156864 . 1 852 0 -chrI 156679 157865 HC_gene_0125_tx_1 4 - 156679 157865 . 1 1187 0 -chrI 156679 157865 HC_gene_0125_tx_2 1 - 156679 157865 . 2 855,207 0,980 -chrI 156679 158503 HC_gene_0125_tx_3 1 - 156679 158503 . 1 1825 0 -chrI 156679 158662 HC_gene_0125_tx_4 29 - 156679 158662 . 1 1984 0 -chrI 156679 158662 HC_gene_0125_tx_5 1 - 156679 158662 . 2 855,1070 0,914 -chrI 158863 159919 HC_gene_0059_tx_1 48 + 158863 159919 . 1 1057 0 -chrI 159091 159919 HC_gene_0059_tx_2 8 + 159091 159919 . 1 829 0 -chrI 159796 161341 HC_gene_0126_tx_1 2 - 159796 161341 . 1 1546 0 -chrI 159898 161341 HC_gene_0126_tx_2 1 - 159898 161341 . 1 1444 0 -chrI 160162 160792 LC_gene_0060_tx_1 1 + 160162 160792 . 1 631 0 -chrI 165191 166168 MC_gene_0061_tx_1 1 + 165191 166168 . 1 978 0 -chrI 166563 167378 HC_gene_0127_tx_1 12 - 166563 167378 . 1 816 0 -chrI 166563 167754 HC_gene_0127_tx_2 8 - 166563 167754 . 1 1192 0 -chrI 166563 168157 HC_gene_0127_tx_3 1 - 166563 168157 . 2 600,923 0,672 -chrI 166563 168157 HC_gene_0127_tx_4 7 - 166563 168157 . 1 1595 0 -chrI 166563 168619 HC_gene_0127_tx_5 3 - 166563 168619 . 1 2057 0 -chrI 166563 168619 HC_gene_0127_tx_6 1 - 166563 168619 . 3 132,504,728 0,475,1329 -chrI 166563 168818 HC_gene_0127_tx_7 1 - 166563 168818 . 1 2256 0 -chrI 166563 168972 HC_gene_0127_tx_8 1 - 166563 168972 . 2 1150,171 0,2239 -chrI 166563 169021 HC_gene_0127_tx_9 39 - 166563 169021 . 1 2459 0 -chrI 166563 169021 HC_gene_0127_tx_10 1 - 166563 169021 . 2 737,1669 0,790 -chrI 169128 169971 LC_gene_0128_tx_1 1 - 169128 169971 . 1 844 0 -chrI 169324 170416 HC_gene_0062_tx_1 339 + 169324 170416 . 1 1093 0 -chrI 169535 170416 HC_gene_0062_tx_2 28 + 169535 170416 . 1 882 0 -chrI 169619 170416 HC_gene_0062_tx_3 19 + 169619 170416 . 1 798 0 -chrI 169742 170416 HC_gene_0062_tx_4 25 + 169742 170416 . 1 675 0 -chrI 169925 170416 HC_gene_0062_tx_5 79 + 169925 170416 . 1 492 0 -chrI 170181 171711 HC_gene_0129_tx_1 10 - 170181 171711 . 1 1531 0 -chrI 170327 171711 HC_gene_0129_tx_2 16 - 170327 171711 . 1 1385 0 -chrI 170955 172274 MC_gene_0063_tx_1 1 + 170955 172274 . 1 1320 0 -chrI 172124 175136 HC_gene_0130_tx_1 2 - 172124 175136 . 1 3013 0 -chrI 175311 176089 HC_gene_0064_tx_1 2 + 175311 176089 . 1 779 0 -chrI 175311 176241 HC_gene_0064_tx_2 6 + 175311 176241 . 1 931 0 -chrI 175311 176564 HC_gene_0064_tx_3 2 + 175311 176564 . 1 1254 0 -chrI 175741 176218 LC_gene_0131_tx_1 1 - 175741 176218 . 1 478 0 -chrI 177623 179482 LC_gene_0065_tx_1 1 + 177623 179482 . 1 1860 0 -chrI 179220 180052 HC_gene_0132_tx_1 3 - 179220 180052 . 1 833 0 -chrI 180099 180825 MC_gene_0133_tx_1 1 - 180099 180825 . 1 727 0 -chrI 180250 180790 HC_gene_0066_tx_1 3 + 180250 180790 . 1 541 0 -chrI 181163 181379 MC_gene_0067_tx_1 1 + 181163 181379 . 1 217 0 -chrI 181478 182129 LC_gene_0068_tx_1 1 + 181478 182129 . 1 652 0 -chrI 182379 182597 LC_gene_0134_tx_1 1 - 182379 182597 . 1 219 0 -chrI 188514 188908 MC_gene_0069_tx_1 1 + 188514 188908 . 1 395 0 -chrII 199 3894 MC_gene_0456_tx_1 1 - 199 3894 . 1 3696 0 -chrII 545 2854 LC_gene_0135_tx_1 1 + 545 2854 . 2 1284,953 0,1357 -chrII 3837 5881 MC_gene_0136_tx_1 1 + 3837 5881 . 1 2045 0 -chrII 8437 9394 LC_gene_0137_tx_1 1 + 8437 9394 . 1 958 0 -chrII 9782 10065 LC_gene_0138_tx_1 1 + 9782 10065 . 1 284 0 -chrII 9832 10448 HC_gene_0457_tx_1 10 - 9832 10448 . 1 617 0 -chrII 9832 10552 HC_gene_0457_tx_2 116 - 9832 10552 . 1 721 0 -chrII 10771 11318 HC_gene_0458_tx_1 2 - 10771 11318 . 1 548 0 -chrII 10975 13983 MC_gene_0139_tx_1 1 + 10975 13983 . 1 3009 0 -chrII 14102 14411 HC_gene_0459_tx_1 5 - 14102 14411 . 1 310 0 -chrII 14102 14663 HC_gene_0459_tx_2 2 - 14102 14663 . 1 562 0 -chrII 14102 14900 HC_gene_0459_tx_3 4 - 14102 14900 . 1 799 0 -chrII 14102 15555 HC_gene_0459_tx_4 1 - 14102 15555 . 1 1454 0 -chrII 14102 15944 HC_gene_0459_tx_5 1 - 14102 15944 . 1 1843 0 -chrII 14102 17310 HC_gene_0459_tx_6 1 - 14102 17310 . 1 3209 0 -chrII 14102 17966 HC_gene_0459_tx_7 4 - 14102 17966 . 1 3865 0 -chrII 15761 17966 HC_gene_0459_tx_8 1 - 15761 17966 . 1 2206 0 -chrII 18074 21314 HC_gene_0460_tx_1 5 - 18074 21314 . 1 3241 0 -chrII 18144 21314 HC_gene_0460_tx_2 1 - 18144 21314 . 1 3171 0 -chrII 21568 23191 HC_gene_0461_tx_1 3 - 21568 23191 . 1 1624 0 -chrII 21568 23782 HC_gene_0461_tx_4 12 - 21568 23782 . 1 2215 0 -chrII 21568 23782 HC_gene_0461_tx_5 1 - 21568 23782 . 2 1234,300 0,1915 -chrII 21714 23191 HC_gene_0461_tx_2 2 - 21714 23191 . 1 1478 0 -chrII 21714 23782 HC_gene_0461_tx_6 5 - 21714 23782 . 1 2069 0 -chrII 21795 23191 HC_gene_0461_tx_3 1 - 21795 23191 . 1 1397 0 -chrII 21795 23782 HC_gene_0461_tx_7 4 - 21795 23782 . 1 1988 0 -chrII 21795 23782 HC_gene_0461_tx_8 1 - 21795 23782 . 3 1383,225,115 0,1474,1873 -chrII 21795 23782 HC_gene_0461_tx_9 1 - 21795 23782 . 2 840,1092 0,896 -chrII 23979 24885 HC_gene_0140_tx_1 140 + 23979 24885 . 1 907 0 -chrII 23979 24962 HC_gene_0140_tx_2 14 + 23979 24962 . 1 984 0 -chrII 24225 24885 HC_gene_0140_tx_3 25 + 24225 24885 . 1 661 0 -chrII 24225 24962 HC_gene_0140_tx_4 6 + 24225 24962 . 1 738 0 -chrII 24804 28262 HC_gene_0462_tx_1 8 - 24804 28262 . 1 3459 0 -chrII 24804 28262 HC_gene_0462_tx_2 1 - 24804 28262 . 2 977,2402 0,1057 -chrII 24804 28607 HC_gene_0462_tx_3 2 - 24804 28607 . 1 3804 0 -chrII 28496 29054 MC_gene_0141_tx_1 1 + 28496 29054 . 1 559 0 -chrII 28687 29214 MC_gene_0142_tx_1 1 + 28687 29214 . 1 528 0 -chrII 28978 29731 MC_gene_0463_tx_1 1 - 28978 29731 . 1 754 0 -chrII 29453 29963 MC_gene_0143_tx_1 1 + 29453 29963 . 1 511 0 -chrII 29575 29960 MC_gene_0143_tx_2 1 + 29575 29960 . 1 386 0 -chrII 29782 30931 LC_gene_0464_tx_1 1 - 29782 30931 . 1 1150 0 -chrII 30819 35553 LC_gene_0144_tx_1 1 + 30819 35553 . 1 4735 0 -chrII 35394 36234 MC_gene_0465_tx_1 1 - 35394 36234 . 1 841 0 -chrII 36547 36793 LC_gene_0466_tx_1 1 - 36547 36793 . 1 247 0 -chrII 36756 38957 HC_gene_0145_tx_1 273 + 36756 38957 . 1 2202 0 -chrII 36756 38957 HC_gene_0145_tx_2 1 + 36756 38957 . 2 970,1148 0,1054 -chrII 36756 38957 HC_gene_0145_tx_3 1 + 36756 38957 . 2 1168,937 0,1265 -chrII 36756 38957 HC_gene_0145_tx_4 1 + 36756 38957 . 2 1093,1067 0,1135 -chrII 36756 38957 HC_gene_0145_tx_5 1 + 36756 38957 . 2 24,2079 0,123 -chrII 36756 38957 HC_gene_0145_tx_6 1 + 36756 38957 . 2 1153,960 0,1242 -chrII 36756 38957 HC_gene_0145_tx_7 1 + 36756 38957 . 2 1381,685 0,1517 -chrII 36756 38957 HC_gene_0145_tx_8 1 + 36756 38957 . 2 1190,960 0,1242 -chrII 36756 38957 HC_gene_0145_tx_9 1 + 36756 38957 . 2 1093,775 0,1427 -chrII 37626 38957 HC_gene_0145_tx_10 31 + 37626 38957 . 1 1332 0 -chrII 38425 38957 HC_gene_0145_tx_11 89 + 38425 38957 . 1 533 0 -chrII 38508 38957 HC_gene_0145_tx_12 67 + 38508 38957 . 1 450 0 -chrII 38623 38957 HC_gene_0145_tx_13 62 + 38623 38957 . 1 335 0 -chrII 39114 40662 HC_gene_0146_tx_1 16 + 39114 40662 . 1 1549 0 -chrII 40063 40662 HC_gene_0146_tx_2 11 + 40063 40662 . 1 600 0 -chrII 40186 40662 HC_gene_0146_tx_3 9 + 40186 40662 . 1 477 0 -chrII 40812 43258 HC_gene_0147_tx_1 1 + 40812 43258 . 1 2447 0 -chrII 40812 43307 HC_gene_0147_tx_2 1 + 40812 43307 . 1 2496 0 -chrII 40812 43346 HC_gene_0147_tx_3 1 + 40812 43346 . 2 226,1696 0,839 -chrII 40812 44209 HC_gene_0147_tx_5 2 + 40812 44209 . 1 3398 0 -chrII 41137 43256 HC_gene_0147_tx_4 1 + 41137 43256 . 1 2120 0 -chrII 41137 44209 HC_gene_0147_tx_6 1 + 41137 44209 . 2 667,1910 0,1163 -chrII 43266 44209 HC_gene_0147_tx_7 21 + 43266 44209 . 1 944 0 -chrII 44105 44465 HC_gene_0467_tx_1 28 - 44105 44465 . 1 361 0 -chrII 44105 44596 HC_gene_0467_tx_2 19 - 44105 44596 . 1 492 0 -chrII 44105 44683 HC_gene_0467_tx_3 19 - 44105 44683 . 1 579 0 -chrII 44105 44969 HC_gene_0467_tx_4 114 - 44105 44969 . 1 865 0 -chrII 45615 46521 HC_gene_0148_tx_1 212 + 45615 46521 . 2 30,544 0,363 -chrII 45615 46521 HC_gene_0148_tx_2 69 + 45615 46521 . 1 907 0 -chrII 45981 46521 HC_gene_0148_tx_3 4932 + 45981 46521 . 1 541 0 -chrII 46218 47194 MC_gene_0468_tx_1 1 - 46218 47194 . 1 977 0 -chrII 46582 47275 HC_gene_0149_tx_1 1 + 46582 47275 . 1 694 0 -chrII 47269 48135 HC_gene_0469_tx_1 28 - 47269 48135 . 1 867 0 -chrII 47269 48135 HC_gene_0469_tx_2 1 - 47269 48135 . 2 455,299 0,568 -chrII 47269 48561 HC_gene_0469_tx_3 13 - 47269 48561 . 1 1293 0 -chrII 47269 48630 HC_gene_0469_tx_4 1 - 47269 48630 . 1 1362 0 -chrII 47269 48631 HC_gene_0469_tx_5 1 - 47269 48631 . 1 1363 0 -chrII 47269 48636 HC_gene_0469_tx_6 1 - 47269 48636 . 1 1368 0 -chrII 47269 48637 HC_gene_0469_tx_7 2 - 47269 48637 . 1 1369 0 -chrII 47269 48638 HC_gene_0469_tx_8 2 - 47269 48638 . 1 1370 0 -chrII 47269 48642 HC_gene_0469_tx_9 2 - 47269 48642 . 1 1374 0 -chrII 47269 48651 HC_gene_0469_tx_10 160 - 47269 48651 . 1 1383 0 -chrII 47269 48651 HC_gene_0469_tx_11 1 - 47269 48651 . 2 528,807 0,576 -chrII 47269 48651 HC_gene_0469_tx_12 1 - 47269 48651 . 2 536,788 0,595 -chrII 47269 48651 HC_gene_0469_tx_13 1 - 47269 48651 . 2 514,781 0,602 -chrII 47269 48651 HC_gene_0469_tx_14 1 - 47269 48651 . 2 528,781 0,602 -chrII 47269 48651 HC_gene_0469_tx_15 1 - 47269 48651 . 2 694,308 0,1075 -chrII 47269 48651 HC_gene_0469_tx_16 1 - 47269 48651 . 2 536,734 0,649 -chrII 47269 48651 HC_gene_0469_tx_17 1 - 47269 48651 . 2 536,801 0,582 -chrII 47269 48651 HC_gene_0469_tx_18 1 - 47269 48651 . 2 831,308 0,1075 -chrII 47269 48651 HC_gene_0469_tx_19 1 - 47269 48651 . 2 291,1036 0,347 -chrII 47269 48651 HC_gene_0469_tx_20 1 - 47269 48651 . 2 514,807 0,576 -chrII 47269 48651 HC_gene_0469_tx_21 1 - 47269 48651 . 2 929,244 0,1139 -chrII 47269 48662 HC_gene_0469_tx_22 1 - 47269 48662 . 1 1394 0 -chrII 47269 48683 HC_gene_0469_tx_23 1 - 47269 48683 . 1 1415 0 -chrII 47269 49039 HC_gene_0469_tx_24 2 - 47269 49039 . 1 1771 0 -chrII 48793 49478 HC_gene_0150_tx_1 64 + 48793 49478 . 1 686 0 -chrII 49082 49478 HC_gene_0150_tx_2 16 + 49082 49478 . 1 397 0 -chrII 49140 49397 MC_gene_0470_tx_1 1 - 49140 49397 . 1 258 0 -chrII 49557 51083 HC_gene_0151_tx_1 7 + 49557 51083 . 1 1527 0 -chrII 49557 51263 HC_gene_0151_tx_2 4 + 49557 51263 . 1 1707 0 -chrII 50426 51083 HC_gene_0151_tx_3 2 + 50426 51083 . 1 658 0 -chrII 50426 51263 HC_gene_0151_tx_4 1 + 50426 51263 . 1 838 0 -chrII 50930 51550 HC_gene_0471_tx_1 10 - 50930 51550 . 1 621 0 -chrII 50930 51605 HC_gene_0471_tx_2 4 - 50930 51605 . 1 676 0 -chrII 52208 54030 MC_gene_0472_tx_1 1 - 52208 54030 . 1 1823 0 -chrII 54040 55526 MC_gene_0473_tx_1 1 - 54040 55526 . 1 1487 0 -chrII 54102 55418 MC_gene_0473_tx_2 1 - 54102 55418 . 1 1317 0 -chrII 54203 59365 MC_gene_0474_tx_1 1 - 54203 59365 . 1 5163 0 -chrII 55300 59549 MC_gene_0474_tx_2 1 - 55300 59549 . 1 4250 0 -chrII 55372 56480 MC_gene_0474_tx_3 1 - 55372 56480 . 1 1109 0 -chrII 59710 60778 HC_gene_0475_tx_1 757 - 59710 60778 . 2 484,81 0,988 -chrII 59710 60778 HC_gene_0475_tx_2 220 - 59710 60778 . 2 480,81 0,988 -chrII 59710 60778 HC_gene_0475_tx_3 20 - 59710 60778 . 2 471,81 0,988 -chrII 59710 60778 HC_gene_0475_tx_4 29 - 59710 60778 . 1 1069 0 -chrII 59710 60778 HC_gene_0475_tx_5 2 - 59710 60778 . 2 487,64 0,1005 -chrII 59710 60778 HC_gene_0475_tx_6 3 - 59710 60778 . 2 480,85 0,984 -chrII 59710 60778 HC_gene_0475_tx_7 2 - 59710 60778 . 2 484,61 0,1008 -chrII 59710 60778 HC_gene_0475_tx_8 2 - 59710 60778 . 2 484,68 0,1001 -chrII 59717 60189 LC_gene_0152_tx_1 1 + 59717 60189 . 1 473 0 -chrII 61153 61579 HC_gene_0476_tx_1 7 - 61153 61579 . 1 427 0 -chrII 61153 62143 HC_gene_0476_tx_2 5 - 61153 62143 . 1 991 0 -chrII 61153 62718 HC_gene_0476_tx_3 21 - 61153 62718 . 1 1566 0 -chrII 63739 66931 HC_gene_0153_tx_1 11 + 63739 66931 . 1 3193 0 -chrII 63739 66931 HC_gene_0153_tx_2 1 + 63739 66931 . 2 1307,1805 0,1388 -chrII 63845 66931 HC_gene_0153_tx_3 2 + 63845 66931 . 1 3087 0 -chrII 64064 66931 HC_gene_0153_tx_4 1 + 64064 66931 . 1 2868 0 -chrII 64064 66931 HC_gene_0153_tx_5 1 + 64064 66931 . 2 1202,1606 0,1262 -chrII 65057 66931 HC_gene_0153_tx_6 1 + 65057 66931 . 1 1875 0 -chrII 65633 66931 HC_gene_0153_tx_7 6 + 65633 66931 . 1 1299 0 -chrII 65633 66931 HC_gene_0153_tx_8 1 + 65633 66931 . 2 1189,73 0,1226 -chrII 65880 66931 HC_gene_0153_tx_9 14 + 65880 66931 . 1 1052 0 -chrII 66467 66931 HC_gene_0153_tx_10 6 + 66467 66931 . 1 465 0 -chrII 66976 69567 HC_gene_0477_tx_1 4 - 66976 69567 . 1 2592 0 -chrII 67033 68811 HC_gene_0477_tx_4 1 - 67033 68811 . 2 1573,127 0,1652 -chrII 67033 68811 HC_gene_0477_tx_5 1 - 67033 68811 . 1 1779 0 -chrII 67033 69567 HC_gene_0477_tx_2 1 - 67033 69567 . 2 1920,420 0,2115 -chrII 67033 69567 HC_gene_0477_tx_3 2 - 67033 69567 . 1 2535 0 -chrII 68900 69693 LC_gene_0154_tx_1 1 + 68900 69693 . 1 794 0 -chrII 69657 71159 HC_gene_0478_tx_1 26 - 69657 71159 . 1 1503 0 -chrII 69657 71159 HC_gene_0478_tx_2 1 - 69657 71159 . 2 791,332 0,1171 -chrII 69657 71159 HC_gene_0478_tx_3 1 - 69657 71159 . 2 708,116 0,1387 -chrII 71499 71990 LC_gene_0479_tx_1 1 - 71499 71990 . 1 492 0 -chrII 71565 73111 HC_gene_0155_tx_1 22 + 71565 73111 . 1 1547 0 -chrII 71565 73111 HC_gene_0155_tx_2 1 + 71565 73111 . 2 186,1207 0,340 -chrII 71801 73111 HC_gene_0155_tx_3 5 + 71801 73111 . 1 1311 0 -chrII 72154 73111 HC_gene_0155_tx_4 17 + 72154 73111 . 1 958 0 -chrII 72962 74712 HC_gene_0480_tx_1 3 - 72962 74712 . 1 1751 0 -chrII 75195 79848 HC_gene_0156_tx_1 4 + 75195 79848 . 1 4654 0 -chrII 75285 79571 HC_gene_0156_tx_2 1 + 75285 79571 . 1 4287 0 -chrII 76590 79848 HC_gene_0156_tx_3 1 + 76590 79848 . 1 3259 0 -chrII 76723 79848 HC_gene_0156_tx_4 1 + 76723 79848 . 1 3126 0 -chrII 78828 79848 HC_gene_0156_tx_5 10 + 78828 79848 . 1 1021 0 -chrII 79881 80383 HC_gene_0481_tx_1 12 - 79881 80383 . 1 503 0 -chrII 79881 80755 HC_gene_0481_tx_2 59 - 79881 80755 . 1 875 0 -chrII 80178 80755 HC_gene_0481_tx_3 1 - 80178 80755 . 1 578 0 -chrII 80203 80755 HC_gene_0481_tx_4 2 - 80203 80755 . 1 553 0 -chrII 80945 81465 HC_gene_0482_tx_1 136 - 80945 81465 . 1 521 0 -chrII 80945 81600 HC_gene_0482_tx_2 159 - 80945 81600 . 1 656 0 -chrII 80945 81600 HC_gene_0482_tx_3 1 - 80945 81600 . 2 366,246 0,410 -chrII 80945 81600 HC_gene_0482_tx_4 1 - 80945 81600 . 2 380,31 0,625 -chrII 80945 81960 HC_gene_0482_tx_5 29 - 80945 81960 . 1 1016 0 -chrII 80945 82031 HC_gene_0482_tx_6 24 - 80945 82031 . 1 1087 0 -chrII 80945 82031 HC_gene_0482_tx_7 1 - 80945 82031 . 2 164,615 0,472 -chrII 80945 82316 HC_gene_0482_tx_8 28 - 80945 82316 . 1 1372 0 -chrII 80945 82316 HC_gene_0482_tx_9 1 - 80945 82316 . 2 151,444 0,928 -chrII 80945 82560 HC_gene_0482_tx_10 29 - 80945 82560 . 1 1616 0 -chrII 80945 82829 HC_gene_0482_tx_11 28 - 80945 82829 . 1 1885 0 -chrII 80945 82829 HC_gene_0482_tx_12 1 - 80945 82829 . 2 797,995 0,890 -chrII 80945 83159 HC_gene_0482_tx_13 20 - 80945 83159 . 1 2215 0 -chrII 80945 83159 HC_gene_0482_tx_14 1 - 80945 83159 . 2 1174,132 0,2083 -chrII 80945 83159 HC_gene_0482_tx_15 1 - 80945 83159 . 2 999,1167 0,1048 -chrII 80945 83619 HC_gene_0482_tx_16 6 - 80945 83619 . 1 2675 0 -chrII 80945 83781 HC_gene_0482_tx_17 10 - 80945 83781 . 1 2837 0 -chrII 80945 83781 HC_gene_0482_tx_18 1 - 80945 83781 . 2 1675,1069 0,1768 -chrII 80945 83848 HC_gene_0482_tx_19 8 - 80945 83848 . 1 2904 0 -chrII 80945 84147 HC_gene_0482_tx_20 11 - 80945 84147 . 1 3203 0 -chrII 80945 84291 HC_gene_0482_tx_21 111 - 80945 84291 . 1 3347 0 -chrII 80945 84291 HC_gene_0482_tx_22 1 - 80945 84291 . 2 2405,356 0,2991 -chrII 80945 84291 HC_gene_0482_tx_23 1 - 80945 84291 . 2 1605,1579 0,1768 -chrII 80945 84291 HC_gene_0482_tx_24 1 - 80945 84291 . 2 813,2484 0,863 -chrII 80945 84291 HC_gene_0482_tx_25 1 - 80945 84291 . 2 1041,2245 0,1102 -chrII 80945 84291 HC_gene_0482_tx_26 1 - 80945 84291 . 2 638,2599 0,748 -chrII 80945 84291 HC_gene_0482_tx_27 1 - 80945 84291 . 2 1675,1579 0,1768 -chrII 80945 84291 HC_gene_0482_tx_28 1 - 80945 84291 . 2 94,3185 0,162 -chrII 80945 84291 HC_gene_0482_tx_29 1 - 80945 84291 . 2 2572,571 0,2776 -chrII 80945 84291 HC_gene_0482_tx_30 1 - 80945 84291 . 2 1420,1861 0,1486 -chrII 80945 84291 HC_gene_0482_tx_31 1 - 80945 84291 . 2 2027,1244 0,2103 -chrII 84415 86473 HC_gene_0483_tx_1 1 - 84415 86473 . 1 2059 0 -chrII 84634 86592 LC_gene_0157_tx_1 1 + 84634 86592 . 1 1959 0 -chrII 87122 87801 HC_gene_0484_tx_1 1 - 87122 87801 . 1 680 0 -chrII 88048 88281 HC_gene_0158_tx_1 10 + 88048 88281 . 1 234 0 -chrII 88402 89008 HC_gene_0485_tx_1 2917 - 88402 89008 . 1 607 0 -chrII 88402 89465 HC_gene_0485_tx_2 16 - 88402 89465 . 1 1064 0 -chrII 89804 90466 LC_gene_0486_tx_1 1 - 89804 90466 . 1 663 0 -chrII 89942 90475 HC_gene_0159_tx_1 5 + 89942 90475 . 1 534 0 -chrII 89942 90476 HC_gene_0159_tx_2 4 + 89942 90476 . 1 535 0 -chrII 89942 90477 HC_gene_0159_tx_3 20 + 89942 90477 . 1 536 0 -chrII 89942 90478 HC_gene_0159_tx_4 2 + 89942 90478 . 1 537 0 -chrII 89942 90479 HC_gene_0159_tx_5 1 + 89942 90479 . 1 538 0 -chrII 89942 90481 HC_gene_0159_tx_6 1 + 89942 90481 . 1 540 0 -chrII 89942 90485 HC_gene_0159_tx_7 2 + 89942 90485 . 1 544 0 -chrII 89942 90489 HC_gene_0159_tx_8 1 + 89942 90489 . 1 548 0 -chrII 89942 90671 HC_gene_0159_tx_9 43 + 89942 90671 . 1 730 0 -chrII 89947 90671 HC_gene_0159_tx_10 1 + 89947 90671 . 1 725 0 -chrII 89960 90671 HC_gene_0159_tx_11 1 + 89960 90671 . 1 712 0 -chrII 90099 90475 HC_gene_0159_tx_13 1 + 90099 90475 . 1 377 0 -chrII 90099 90476 HC_gene_0159_tx_14 1 + 90099 90476 . 1 378 0 -chrII 90099 90477 HC_gene_0159_tx_15 3 + 90099 90477 . 1 379 0 -chrII 90099 90671 HC_gene_0159_tx_12 2 + 90099 90671 . 1 573 0 -chrII 90585 91436 LC_gene_0487_tx_1 1 - 90585 91436 . 1 852 0 -chrII 90684 92103 HC_gene_0160_tx_1 16 + 90684 92103 . 1 1420 0 -chrII 90684 92210 HC_gene_0160_tx_2 28 + 90684 92210 . 1 1527 0 -chrII 90684 92210 HC_gene_0160_tx_3 1 + 90684 92210 . 2 774,688 0,839 -chrII 90684 92210 HC_gene_0160_tx_4 1 + 90684 92210 . 2 929,549 0,978 -chrII 90684 92210 HC_gene_0160_tx_5 1 + 90684 92210 . 2 750,707 0,820 -chrII 91104 92103 HC_gene_0160_tx_6 2 + 91104 92103 . 1 1000 0 -chrII 91104 92210 HC_gene_0160_tx_7 3 + 91104 92210 . 1 1107 0 -chrII 92344 93487 HC_gene_0161_tx_1 67 + 92344 93487 . 1 1144 0 -chrII 92344 93614 HC_gene_0161_tx_2 10 + 92344 93614 . 1 1271 0 -chrII 92344 93614 HC_gene_0161_tx_3 1 + 92344 93614 . 2 391,299 0,972 -chrII 92344 93681 HC_gene_0161_tx_4 3 + 92344 93681 . 1 1338 0 -chrII 93520 94046 HC_gene_0488_tx_1 15 - 93520 94046 . 1 527 0 -chrII 93520 95551 HC_gene_0488_tx_2 3 - 93520 95551 . 1 2032 0 -chrII 93520 95890 HC_gene_0488_tx_3 1 - 93520 95890 . 1 2371 0 -chrII 93520 95953 HC_gene_0488_tx_4 4 - 93520 95953 . 1 2434 0 -chrII 93520 95953 HC_gene_0488_tx_5 1 - 93520 95953 . 2 935,1356 0,1078 -chrII 93520 96113 HC_gene_0488_tx_6 12 - 93520 96113 . 1 2594 0 -chrII 93520 96113 HC_gene_0488_tx_7 1 - 93520 96113 . 2 1110,1370 0,1224 -chrII 94498 96113 HC_gene_0488_tx_8 1 - 94498 96113 . 1 1616 0 -chrII 96329 99445 HC_gene_0489_tx_1 1 - 96329 99445 . 1 3117 0 -chrII 96432 97608 LC_gene_0162_tx_1 1 + 96432 97608 . 1 1177 0 -chrII 99150 100301 LC_gene_0163_tx_1 1 + 99150 100301 . 1 1152 0 -chrII 100298 100767 HC_gene_0490_tx_1 26 - 100298 100767 . 1 470 0 -chrII 100298 100922 HC_gene_0490_tx_2 18 - 100298 100922 . 1 625 0 -chrII 100298 101189 HC_gene_0490_tx_3 155 - 100298 101189 . 1 892 0 -chrII 101868 105346 HC_gene_0164_tx_1 2 + 101868 105346 . 1 3479 0 -chrII 104001 104677 MC_gene_0491_tx_1 1 - 104001 104677 . 1 677 0 -chrII 105229 105771 HC_gene_0492_tx_1 11 - 105229 105771 . 1 543 0 -chrII 105229 106296 HC_gene_0492_tx_2 7 - 105229 106296 . 1 1068 0 -chrII 105229 107507 HC_gene_0492_tx_3 27 - 105229 107507 . 1 2279 0 -chrII 105229 107507 HC_gene_0492_tx_4 1 - 105229 107507 . 2 698,1366 0,913 -chrII 105229 107507 HC_gene_0492_tx_5 1 - 105229 107507 . 2 914,1297 0,982 -chrII 107913 108871 HC_gene_0165_tx_1 2 + 107913 108871 . 1 959 0 -chrII 107913 109959 HC_gene_0165_tx_2 6 + 107913 109959 . 1 2047 0 -chrII 108629 109959 HC_gene_0165_tx_3 2 + 108629 109959 . 1 1331 0 -chrII 108803 109981 MC_gene_0493_tx_1 1 - 108803 109981 . 1 1179 0 -chrII 109935 110572 HC_gene_0494_tx_1 36 - 109935 110572 . 2 486,67 0,571 -chrII 109935 110572 HC_gene_0494_tx_2 11 - 109935 110572 . 1 638 0 -chrII 109935 110572 HC_gene_0494_tx_3 2 - 109935 110572 . 2 486,71 0,567 -chrII 109935 111206 HC_gene_0494_tx_4 1 - 109935 111206 . 1 1272 0 -chrII 109935 111206 HC_gene_0494_tx_5 3 - 109935 111206 . 2 486,701 0,571 -chrII 110699 111284 HC_gene_0166_tx_1 17 + 110699 111284 . 2 181,336 0,250 -chrII 110699 111284 HC_gene_0166_tx_2 5 + 110699 111284 . 2 172,340 0,246 -chrII 110699 111284 HC_gene_0166_tx_3 5 + 110699 111284 . 1 586 0 -chrII 110699 111429 HC_gene_0166_tx_4 1 + 110699 111429 . 2 181,481 0,250 -chrII 110699 112342 HC_gene_0166_tx_5 1 + 110699 112342 . 1 1644 0 -chrII 110699 112831 HC_gene_0166_tx_6 2 + 110699 112831 . 2 181,1883 0,250 -chrII 111408 112487 HC_gene_0166_tx_7 2 + 111408 112487 . 1 1080 0 -chrII 111408 112831 HC_gene_0166_tx_8 78 + 111408 112831 . 1 1424 0 -chrII 111408 112831 HC_gene_0166_tx_9 1 + 111408 112831 . 2 272,952 0,472 -chrII 111408 112831 HC_gene_0166_tx_10 1 + 111408 112831 . 2 743,623 0,801 -chrII 111408 112831 HC_gene_0166_tx_11 1 + 111408 112831 . 2 787,577 0,847 -chrII 111408 112831 HC_gene_0166_tx_12 1 + 111408 112831 . 2 325,1021 0,403 -chrII 111424 112831 HC_gene_0166_tx_13 1 + 111424 112831 . 2 422,916 0,492 -chrII 111692 112831 HC_gene_0166_tx_14 18 + 111692 112831 . 1 1140 0 -chrII 111840 112831 HC_gene_0166_tx_15 2 + 111840 112831 . 1 992 0 -chrII 111911 112487 HC_gene_0166_tx_17 1 + 111911 112487 . 1 577 0 -chrII 111911 112831 HC_gene_0166_tx_16 18 + 111911 112831 . 1 921 0 -chrII 112392 112487 HC_gene_0166_tx_18 1 + 112392 112487 . 1 96 0 -chrII 112392 112831 HC_gene_0166_tx_19 35 + 112392 112831 . 1 440 0 -chrII 112734 113236 HC_gene_0495_tx_1 18 - 112734 113236 . 1 503 0 -chrII 112734 113440 HC_gene_0495_tx_2 118 - 112734 113440 . 1 707 0 -chrII 113679 115384 HC_gene_0167_tx_1 1 + 113679 115384 . 2 928,676 0,1030 -chrII 113719 115384 HC_gene_0167_tx_2 44 + 113719 115384 . 1 1666 0 -chrII 113719 115384 HC_gene_0167_tx_3 1 + 113719 115384 . 2 467,1129 0,537 -chrII 113719 115384 HC_gene_0167_tx_4 1 + 113719 115384 . 2 142,1180 0,486 -chrII 113719 115384 HC_gene_0167_tx_5 1 + 113719 115384 . 2 204,356 0,1310 -chrII 113719 115560 HC_gene_0167_tx_6 88 + 113719 115560 . 1 1842 0 -chrII 113719 115560 HC_gene_0167_tx_7 1 + 113719 115560 . 2 912,863 0,979 -chrII 113719 115560 HC_gene_0167_tx_8 1 + 113719 115560 . 2 938,863 0,979 -chrII 113719 115560 HC_gene_0167_tx_9 1 + 113719 115560 . 2 751,1017 0,825 -chrII 113719 117455 HC_gene_0167_tx_15 1 + 113719 117455 . 2 1756,1886 0,1851 -chrII 113726 115384 HC_gene_0167_tx_10 1 + 113726 115384 . 2 883,690 0,969 -chrII 113743 115560 HC_gene_0167_tx_11 1 + 113743 115560 . 2 994,771 0,1047 -chrII 113751 115384 HC_gene_0167_tx_12 1 + 113751 115384 . 2 854,261 0,1373 -chrII 114000 115384 HC_gene_0167_tx_13 11 + 114000 115384 . 1 1385 0 -chrII 114000 115560 HC_gene_0167_tx_14 7 + 114000 115560 . 1 1561 0 -chrII 114600 115384 HC_gene_0167_tx_16 4 + 114600 115384 . 1 785 0 -chrII 114600 115560 HC_gene_0167_tx_17 10 + 114600 115560 . 1 961 0 -chrII 114727 115384 HC_gene_0167_tx_18 6 + 114727 115384 . 1 658 0 -chrII 114727 115384 HC_gene_0167_tx_19 1 + 114727 115384 . 2 92,488 0,170 -chrII 114727 115560 HC_gene_0167_tx_20 9 + 114727 115560 . 1 834 0 -chrII 114727 117455 HC_gene_0167_tx_21 1 + 114727 117455 . 2 748,1886 0,843 -chrII 114937 115384 HC_gene_0167_tx_22 7 + 114937 115384 . 1 448 0 -chrII 114937 115560 HC_gene_0167_tx_23 31 + 114937 115560 . 1 624 0 -chrII 115062 115384 HC_gene_0167_tx_24 3 + 115062 115384 . 1 323 0 -chrII 115062 115560 HC_gene_0167_tx_25 15 + 115062 115560 . 1 499 0 -chrII 115315 116804 HC_gene_0496_tx_1 2 - 115315 116804 . 1 1490 0 -chrII 115458 116038 HC_gene_0496_tx_5 8 - 115458 116038 . 1 581 0 -chrII 115458 116804 HC_gene_0496_tx_2 1 - 115458 116804 . 2 363,80 0,1267 -chrII 115458 116804 HC_gene_0496_tx_3 32 - 115458 116804 . 1 1347 0 -chrII 115458 116804 HC_gene_0496_tx_4 1 - 115458 116804 . 2 438,839 0,508 -chrII 115458 117199 HC_gene_0496_tx_6 11 - 115458 117199 . 1 1742 0 -chrII 117098 117455 HC_gene_0167_tx_26 10 + 117098 117455 . 1 358 0 -chrII 117098 119328 HC_gene_0167_tx_28 1 + 117098 119328 . 1 2231 0 -chrII 117119 117455 HC_gene_0167_tx_27 1 + 117119 117455 . 1 337 0 -chrII 117377 119328 HC_gene_0167_tx_29 4 + 117377 119328 . 1 1952 0 -chrII 117480 118198 HC_gene_0167_tx_32 1 + 117480 118198 . 1 719 0 -chrII 117480 119328 HC_gene_0167_tx_30 34 + 117480 119328 . 1 1849 0 -chrII 117480 119328 HC_gene_0167_tx_31 1 + 117480 119328 . 2 913,796 0,1053 -chrII 119283 119623 HC_gene_0497_tx_1 15 - 119283 119623 . 1 341 0 -chrII 119283 119697 HC_gene_0497_tx_2 1 - 119283 119697 . 1 415 0 -chrII 119283 119752 HC_gene_0497_tx_3 14 - 119283 119752 . 1 470 0 -chrII 119283 121761 HC_gene_0497_tx_4 2 - 119283 121761 . 1 2479 0 -chrII 119283 122103 HC_gene_0497_tx_5 10 - 119283 122103 . 1 2821 0 -chrII 119283 122103 HC_gene_0497_tx_6 1 - 119283 122103 . 2 2183,574 0,2247 -chrII 119283 122103 HC_gene_0497_tx_7 1 - 119283 122103 . 2 1469,125 0,2696 -chrII 121359 122461 MC_gene_0168_tx_1 1 + 121359 122461 . 1 1103 0 -chrII 122305 122583 HC_gene_0498_tx_1 10 - 122305 122583 . 1 279 0 -chrII 122305 122681 HC_gene_0498_tx_2 13 - 122305 122681 . 1 377 0 -chrII 122305 122869 HC_gene_0498_tx_3 5 - 122305 122869 . 1 565 0 -chrII 122305 123202 HC_gene_0498_tx_6 5 - 122305 123202 . 1 898 0 -chrII 122305 123266 HC_gene_0498_tx_7 7 - 122305 123266 . 1 962 0 -chrII 122305 123393 HC_gene_0498_tx_8 8 - 122305 123393 . 1 1089 0 -chrII 122305 123454 HC_gene_0498_tx_9 4 - 122305 123454 . 1 1150 0 -chrII 122305 123586 HC_gene_0498_tx_10 7 - 122305 123586 . 1 1282 0 -chrII 122305 124147 HC_gene_0498_tx_18 3 - 122305 124147 . 1 1843 0 -chrII 122305 124147 HC_gene_0498_tx_19 1 - 122305 124147 . 2 538,1179 0,664 -chrII 122305 124237 HC_gene_0498_tx_20 2 - 122305 124237 . 1 1933 0 -chrII 122305 124380 HC_gene_0498_tx_21 1 - 122305 124380 . 1 2076 0 -chrII 122305 124622 HC_gene_0498_tx_22 1 - 122305 124622 . 1 2318 0 -chrII 122305 124823 HC_gene_0498_tx_23 6 - 122305 124823 . 1 2519 0 -chrII 122362 122869 HC_gene_0498_tx_4 1 - 122362 122869 . 1 508 0 -chrII 122362 124147 HC_gene_0498_tx_24 1 - 122362 124147 . 1 1786 0 -chrII 122436 122681 HC_gene_0498_tx_35 4 - 122436 122681 . 1 246 0 -chrII 122436 122869 HC_gene_0498_tx_5 1 - 122436 122869 . 1 434 0 -chrII 122436 123202 HC_gene_0498_tx_11 4 - 122436 123202 . 1 767 0 -chrII 122436 123266 HC_gene_0498_tx_12 4 - 122436 123266 . 1 831 0 -chrII 122436 123393 HC_gene_0498_tx_13 2 - 122436 123393 . 1 958 0 -chrII 122436 124147 HC_gene_0498_tx_25 1 - 122436 124147 . 1 1712 0 -chrII 122436 124622 HC_gene_0498_tx_26 1 - 122436 124622 . 1 2187 0 -chrII 122436 124823 HC_gene_0498_tx_27 2 - 122436 124823 . 1 2388 0 -chrII 122436 124823 HC_gene_0498_tx_28 1 - 122436 124823 . 2 1185,955 0,1433 -chrII 122563 122869 HC_gene_0498_tx_36 5 - 122563 122869 . 1 307 0 -chrII 122563 123202 HC_gene_0498_tx_14 3 - 122563 123202 . 1 640 0 -chrII 122563 123266 HC_gene_0498_tx_15 2 - 122563 123266 . 1 704 0 -chrII 122563 123454 HC_gene_0498_tx_16 1 - 122563 123454 . 1 892 0 -chrII 122563 123586 HC_gene_0498_tx_17 2 - 122563 123586 . 1 1024 0 -chrII 122563 124147 HC_gene_0498_tx_29 2 - 122563 124147 . 1 1585 0 -chrII 122563 124380 HC_gene_0498_tx_30 1 - 122563 124380 . 1 1818 0 -chrII 122563 124622 HC_gene_0498_tx_31 1 - 122563 124622 . 1 2060 0 -chrII 122563 124801 HC_gene_0498_tx_32 1 - 122563 124801 . 1 2239 0 -chrII 122563 124823 HC_gene_0498_tx_33 3 - 122563 124823 . 1 2261 0 -chrII 122563 124823 HC_gene_0498_tx_34 1 - 122563 124823 . 2 1328,878 0,1383 -chrII 125047 126182 HC_gene_0169_tx_1 69 + 125047 126182 . 2 108,912 0,224 -chrII 125047 126182 HC_gene_0169_tx_2 1 + 125047 126182 . 2 112,900 0,236 -chrII 125047 126182 HC_gene_0169_tx_3 10 + 125047 126182 . 1 1136 0 -chrII 125047 126182 HC_gene_0169_tx_4 1 + 125047 126182 . 2 112,906 0,230 -chrII 125047 126182 HC_gene_0169_tx_5 1 + 125047 126182 . 2 115,903 0,233 -chrII 125047 126182 HC_gene_0169_tx_6 2 + 125047 126182 . 2 108,900 0,236 -chrII 125047 126182 HC_gene_0169_tx_7 2 + 125047 126182 . 2 108,906 0,230 -chrII 125284 126182 HC_gene_0169_tx_8 9 + 125284 126182 . 1 899 0 -chrII 125572 126182 HC_gene_0169_tx_9 22 + 125572 126182 . 1 611 0 -chrII 125572 126182 HC_gene_0169_tx_10 1 + 125572 126182 . 2 348,184 0,427 -chrII 125572 126182 HC_gene_0169_tx_11 1 + 125572 126182 . 2 447,87 0,524 -chrII 125858 126182 HC_gene_0169_tx_12 14 + 125858 126182 . 1 325 0 -chrII 126093 127562 HC_gene_0499_tx_1 5 - 126093 127562 . 1 1470 0 -chrII 126093 127562 HC_gene_0499_tx_2 1 - 126093 127562 . 2 362,678 0,792 -chrII 126522 127562 HC_gene_0499_tx_3 1 - 126522 127562 . 1 1041 0 -chrII 126605 127509 HC_gene_0170_tx_1 14 + 126605 127509 . 1 905 0 -chrII 127678 128269 HC_gene_0500_tx_1 16 - 127678 128269 . 1 592 0 -chrII 127678 128269 HC_gene_0500_tx_2 1 - 127678 128269 . 2 160,367 0,225 -chrII 127678 128418 HC_gene_0500_tx_4 9 - 127678 128418 . 1 741 0 -chrII 127678 128767 HC_gene_0500_tx_7 10 - 127678 128767 . 1 1090 0 -chrII 127678 128874 HC_gene_0500_tx_8 2 - 127678 128874 . 1 1197 0 -chrII 127678 129387 HC_gene_0500_tx_11 8 - 127678 129387 . 1 1710 0 -chrII 127678 129452 HC_gene_0500_tx_12 3 - 127678 129452 . 1 1775 0 -chrII 127678 129664 HC_gene_0500_tx_13 5 - 127678 129664 . 1 1987 0 -chrII 127678 129664 HC_gene_0500_tx_14 1 - 127678 129664 . 3 366,1024,237 0,503,1750 -chrII 127678 129745 HC_gene_0500_tx_15 1 - 127678 129745 . 1 2068 0 -chrII 127678 130001 HC_gene_0500_tx_16 6 - 127678 130001 . 1 2324 0 -chrII 127678 130001 HC_gene_0500_tx_17 1 - 127678 130001 . 2 884,1383 0,941 -chrII 127678 130144 HC_gene_0500_tx_18 1 - 127678 130144 . 1 2467 0 -chrII 127678 130263 HC_gene_0500_tx_19 1 - 127678 130263 . 2 596,1893 0,693 -chrII 127678 130263 HC_gene_0500_tx_20 1 - 127678 130263 . 1 2586 0 -chrII 127678 130341 HC_gene_0500_tx_21 4 - 127678 130341 . 1 2664 0 -chrII 127678 130756 HC_gene_0500_tx_22 1 - 127678 130756 . 1 3079 0 -chrII 127678 131083 HC_gene_0500_tx_23 1 - 127678 131083 . 1 3406 0 -chrII 127678 131872 HC_gene_0500_tx_24 2 - 127678 131872 . 1 4195 0 -chrII 127678 132197 HC_gene_0500_tx_25 4 - 127678 132197 . 1 4520 0 -chrII 127678 132197 HC_gene_0500_tx_26 1 - 127678 132197 . 2 4088,290 0,4230 -chrII 127753 128269 HC_gene_0500_tx_3 23 - 127753 128269 . 1 517 0 -chrII 127753 128418 HC_gene_0500_tx_5 4 - 127753 128418 . 1 666 0 -chrII 127753 128418 HC_gene_0500_tx_6 1 - 127753 128418 . 2 109,498 0,168 -chrII 127753 128767 HC_gene_0500_tx_9 2 - 127753 128767 . 1 1015 0 -chrII 127753 128874 HC_gene_0500_tx_10 4 - 127753 128874 . 1 1122 0 -chrII 127753 129387 HC_gene_0500_tx_27 3 - 127753 129387 . 1 1635 0 -chrII 127753 129452 HC_gene_0500_tx_28 1 - 127753 129452 . 1 1700 0 -chrII 127753 129664 HC_gene_0500_tx_29 4 - 127753 129664 . 1 1912 0 -chrII 127753 129745 HC_gene_0500_tx_30 2 - 127753 129745 . 1 1993 0 -chrII 127753 130144 HC_gene_0500_tx_31 1 - 127753 130144 . 1 2392 0 -chrII 127753 130263 HC_gene_0500_tx_32 1 - 127753 130263 . 1 2511 0 -chrII 127753 130341 HC_gene_0500_tx_33 1 - 127753 130341 . 1 2589 0 -chrII 127753 130756 HC_gene_0500_tx_34 1 - 127753 130756 . 1 3004 0 -chrII 127753 130983 HC_gene_0500_tx_35 2 - 127753 130983 . 1 3231 0 -chrII 127753 132197 HC_gene_0500_tx_36 2 - 127753 132197 . 1 4445 0 -chrII 128333 129732 MC_gene_0171_tx_1 1 + 128333 129732 . 1 1400 0 -chrII 132425 133843 HC_gene_0172_tx_1 1 + 132425 133843 . 2 428,829 0,590 -chrII 132425 133843 HC_gene_0172_tx_2 3 + 132425 133843 . 1 1419 0 -chrII 132425 133935 HC_gene_0172_tx_3 7 + 132425 133935 . 1 1511 0 -chrII 132425 133935 HC_gene_0172_tx_4 1 + 132425 133935 . 2 202,736 0,775 -chrII 132639 133843 HC_gene_0172_tx_5 1 + 132639 133843 . 1 1205 0 -chrII 132639 133935 HC_gene_0172_tx_6 3 + 132639 133935 . 1 1297 0 -chrII 133063 133843 HC_gene_0172_tx_7 4 + 133063 133843 . 1 781 0 -chrII 133063 133935 HC_gene_0172_tx_8 8 + 133063 133935 . 1 873 0 -chrII 133119 133843 HC_gene_0172_tx_9 1 + 133119 133843 . 1 725 0 -chrII 133119 133935 HC_gene_0172_tx_10 3 + 133119 133935 . 1 817 0 -chrII 133340 133843 HC_gene_0172_tx_11 3 + 133340 133843 . 1 504 0 -chrII 133340 133935 HC_gene_0172_tx_12 7 + 133340 133935 . 1 596 0 -chrII 133844 134195 HC_gene_0501_tx_1 5 - 133844 134195 . 1 352 0 -chrII 133844 134251 HC_gene_0501_tx_2 24 - 133844 134251 . 1 408 0 -chrII 133844 134531 HC_gene_0501_tx_3 27 - 133844 134531 . 1 688 0 -chrII 133844 135249 HC_gene_0501_tx_4 4 - 133844 135249 . 1 1406 0 -chrII 133844 135313 HC_gene_0501_tx_5 11 - 133844 135313 . 1 1470 0 -chrII 133844 135703 HC_gene_0501_tx_6 47 - 133844 135703 . 1 1860 0 -chrII 133844 135703 HC_gene_0501_tx_7 1 - 133844 135703 . 2 52,1690 0,170 -chrII 133997 135703 HC_gene_0501_tx_8 1 - 133997 135703 . 1 1707 0 -chrII 134001 135703 HC_gene_0501_tx_9 2 - 134001 135703 . 1 1703 0 -chrII 136106 136509 HC_gene_0173_tx_1 1 + 136106 136509 . 1 404 0 -chrII 136106 136642 HC_gene_0173_tx_2 2 + 136106 136642 . 1 537 0 -chrII 136423 136642 HC_gene_0173_tx_3 1 + 136423 136642 . 1 220 0 -chrII 136423 137648 HC_gene_0173_tx_4 2 + 136423 137648 . 1 1226 0 -chrII 136526 137648 HC_gene_0173_tx_5 36 + 136526 137648 . 1 1123 0 -chrII 136526 137648 HC_gene_0173_tx_6 1 + 136526 137648 . 2 960,91 0,1032 -chrII 136587 137554 MC_gene_0502_tx_1 1 - 136587 137554 . 1 968 0 -chrII 136972 137648 HC_gene_0173_tx_7 2 + 136972 137648 . 1 677 0 -chrII 137940 141041 LC_gene_0174_tx_1 1 + 137940 141041 . 1 3102 0 -chrII 138076 140317 HC_gene_0503_tx_1 4 - 138076 140317 . 1 2242 0 -chrII 138153 140211 HC_gene_0503_tx_2 2 - 138153 140211 . 1 2059 0 -chrII 138153 140317 HC_gene_0503_tx_3 20 - 138153 140317 . 1 2165 0 -chrII 138153 140317 HC_gene_0503_tx_4 1 - 138153 140317 . 2 1153,508 0,1657 -chrII 138153 140317 HC_gene_0503_tx_5 1 - 138153 140317 . 2 1105,688 0,1477 -chrII 141032 142114 HC_gene_0175_tx_1 14 + 141032 142114 . 1 1083 0 -chrII 141224 142114 HC_gene_0175_tx_2 409 + 141224 142114 . 1 891 0 -chrII 141344 142114 HC_gene_0175_tx_3 28 + 141344 142114 . 1 771 0 -chrII 141465 142114 HC_gene_0175_tx_4 39 + 141465 142114 . 1 650 0 -chrII 141606 142114 HC_gene_0175_tx_5 46 + 141606 142114 . 1 509 0 -chrII 142001 142372 HC_gene_0504_tx_1 20 - 142001 142372 . 1 372 0 -chrII 142001 142435 HC_gene_0504_tx_2 6 - 142001 142435 . 1 435 0 -chrII 142001 142529 HC_gene_0504_tx_3 6 - 142001 142529 . 1 529 0 -chrII 142001 142651 HC_gene_0504_tx_4 31 - 142001 142651 . 1 651 0 -chrII 142001 142897 HC_gene_0504_tx_5 92 - 142001 142897 . 2 749,51 0,846 -chrII 142001 142897 HC_gene_0504_tx_6 12 - 142001 142897 . 1 897 0 -chrII 142001 142897 HC_gene_0504_tx_7 3 - 142001 142897 . 2 753,51 0,846 -chrII 142001 142897 HC_gene_0504_tx_8 2 - 142001 142897 . 2 737,59 0,838 -chrII 142001 143112 HC_gene_0504_tx_9 1 - 142001 143112 . 2 749,266 0,846 -chrII 142001 143112 HC_gene_0504_tx_10 1 - 142001 143112 . 1 1112 0 -chrII 143187 143334 HC_gene_0176_tx_1 1 + 143187 143334 . 1 148 0 -chrII 143187 143708 HC_gene_0176_tx_2 57 + 143187 143708 . 1 522 0 -chrII 143241 143708 HC_gene_0176_tx_3 22 + 143241 143708 . 1 468 0 -chrII 143589 144600 HC_gene_0505_tx_1 1 - 143589 144600 . 1 1012 0 -chrII 143589 145783 HC_gene_0505_tx_2 2 - 143589 145783 . 1 2195 0 -chrII 143886 144372 HC_gene_0505_tx_9 19 - 143886 144372 . 1 487 0 -chrII 143886 144600 HC_gene_0505_tx_10 47 - 143886 144600 . 1 715 0 -chrII 143886 145012 HC_gene_0505_tx_11 15 - 143886 145012 . 1 1127 0 -chrII 143886 145127 HC_gene_0505_tx_12 12 - 143886 145127 . 1 1242 0 -chrII 143886 145783 HC_gene_0505_tx_3 121 - 143886 145783 . 1 1898 0 -chrII 143886 145783 HC_gene_0505_tx_4 1 - 143886 145783 . 2 927,704 0,1194 -chrII 143886 145783 HC_gene_0505_tx_5 2 - 143886 145783 . 2 831,964 0,934 -chrII 143886 145783 HC_gene_0505_tx_6 1 - 143886 145783 . 2 227,1612 0,286 -chrII 143886 145783 HC_gene_0505_tx_7 1 - 143886 145783 . 2 1144,704 0,1194 -chrII 143886 145783 HC_gene_0505_tx_8 1 - 143886 145783 . 2 1555,200 0,1698 -chrII 146136 146979 HC_gene_0177_tx_1 113 + 146136 146979 . 1 844 0 -chrII 146136 146979 HC_gene_0177_tx_2 1 + 146136 146979 . 2 436,360 0,484 -chrII 146234 146979 HC_gene_0177_tx_3 10 + 146234 146979 . 1 746 0 -chrII 146333 146979 HC_gene_0177_tx_4 12 + 146333 146979 . 1 647 0 -chrII 146333 147067 HC_gene_0177_tx_5 1 + 146333 147067 . 1 735 0 -chrII 146519 146979 HC_gene_0177_tx_6 15 + 146519 146979 . 1 461 0 -chrII 146770 146979 MC_gene_0506_tx_1 1 - 146770 146979 . 1 210 0 -chrII 147110 149301 HC_gene_0178_tx_1 1 + 147110 149301 . 1 2192 0 -chrII 147110 150427 HC_gene_0178_tx_2 7 + 147110 150427 . 1 3318 0 -chrII 150222 151237 HC_gene_0507_tx_1 3 - 150222 151237 . 1 1016 0 -chrII 150299 150685 HC_gene_0507_tx_5 34 - 150299 150685 . 1 387 0 -chrII 150299 150839 HC_gene_0507_tx_6 36 - 150299 150839 . 1 541 0 -chrII 150299 151017 HC_gene_0507_tx_2 27 - 150299 151017 . 1 719 0 -chrII 150299 151150 HC_gene_0507_tx_3 6 - 150299 151150 . 1 852 0 -chrII 150299 151237 HC_gene_0507_tx_4 178 - 150299 151237 . 1 939 0 -chrII 150715 151484 LC_gene_0179_tx_1 1 + 150715 151484 . 1 770 0 -chrII 151408 153689 HC_gene_0508_tx_1 7 - 151408 153689 . 1 2282 0 -chrII 151408 153689 HC_gene_0508_tx_2 1 - 151408 153689 . 2 1389,557 0,1725 -chrII 152685 153734 LC_gene_0180_tx_1 1 + 152685 153734 . 1 1050 0 -chrII 153658 158452 HC_gene_0509_tx_1 1 - 153658 158452 . 1 4795 0 -chrII 155117 157040 LC_gene_0181_tx_1 1 + 155117 157040 . 1 1924 0 -chrII 158488 159722 HC_gene_0510_tx_1 11 - 158488 159722 . 1 1235 0 -chrII 158588 159722 HC_gene_0510_tx_2 82 - 158588 159722 . 1 1135 0 -chrII 158588 159722 HC_gene_0510_tx_3 1 - 158588 159722 . 2 371,602 0,533 -chrII 158588 159722 HC_gene_0510_tx_4 1 - 158588 159722 . 2 795,237 0,898 -chrII 158588 159722 HC_gene_0510_tx_5 1 - 158588 159722 . 3 87,433,499 0,145,636 -chrII 158588 159722 HC_gene_0510_tx_6 1 - 158588 159722 . 2 968,84 0,1051 -chrII 160094 161533 HC_gene_0182_tx_1 96 + 160094 161533 . 1 1440 0 -chrII 160094 161533 HC_gene_0182_tx_2 1 + 160094 161533 . 2 832,551 0,889 -chrII 160094 161533 HC_gene_0182_tx_3 1 + 160094 161533 . 2 437,932 0,508 -chrII 160094 161533 HC_gene_0182_tx_4 1 + 160094 161533 . 2 445,929 0,511 -chrII 160277 161533 HC_gene_0182_tx_5 11 + 160277 161533 . 1 1257 0 -chrII 160452 161456 LC_gene_0511_tx_1 1 - 160452 161456 . 1 1005 0 -chrII 161076 161533 HC_gene_0182_tx_6 27 + 161076 161533 . 1 458 0 -chrII 161677 162878 HC_gene_0183_tx_1 8 + 161677 162878 . 1 1202 0 -chrII 162764 163906 HC_gene_0512_tx_1 89 - 162764 163906 . 1 1143 0 -chrII 162764 164018 HC_gene_0512_tx_2 55 - 162764 164018 . 1 1255 0 -chrII 162764 164018 HC_gene_0512_tx_3 1 - 162764 164018 . 2 376,812 0,443 -chrII 162764 164116 HC_gene_0512_tx_4 862 - 162764 164116 . 1 1353 0 -chrII 162764 164116 HC_gene_0512_tx_5 1 - 162764 164116 . 2 865,334 0,1019 -chrII 162764 164116 HC_gene_0512_tx_6 1 - 162764 164116 . 2 1118,180 0,1173 -chrII 162764 164116 HC_gene_0512_tx_7 1 - 162764 164116 . 2 754,531 0,822 -chrII 162764 164116 HC_gene_0512_tx_8 1 - 162764 164116 . 2 439,777 0,576 -chrII 162764 164116 HC_gene_0512_tx_9 1 - 162764 164116 . 2 467,744 0,609 -chrII 162764 164116 HC_gene_0512_tx_10 1 - 162764 164116 . 2 130,672 0,681 -chrII 162764 164116 HC_gene_0512_tx_11 1 - 162764 164116 . 2 439,831 0,522 -chrII 162764 164116 HC_gene_0512_tx_12 2 - 162764 164116 . 2 1049,180 0,1173 -chrII 162764 164116 HC_gene_0512_tx_13 1 - 162764 164116 . 2 664,545 0,808 -chrII 162764 164116 HC_gene_0512_tx_14 1 - 162764 164116 . 2 623,612 0,741 -chrII 162764 164116 HC_gene_0512_tx_15 1 - 162764 164116 . 2 575,678 0,675 -chrII 162764 164116 HC_gene_0512_tx_16 1 - 162764 164116 . 2 1188,64 0,1289 -chrII 162764 164116 HC_gene_0512_tx_17 1 - 162764 164116 . 2 68,957 0,396 -chrII 162764 164116 HC_gene_0512_tx_18 1 - 162764 164116 . 2 35,1256 0,97 -chrII 162764 164116 HC_gene_0512_tx_19 1 - 162764 164116 . 2 1033,180 0,1173 -chrII 162764 164116 HC_gene_0512_tx_20 1 - 162764 164116 . 2 61,1228 0,125 -chrII 162764 164116 HC_gene_0512_tx_21 1 - 162764 164116 . 2 396,910 0,443 -chrII 162764 164116 HC_gene_0512_tx_22 1 - 162764 164116 . 2 935,334 0,1019 -chrII 162764 164116 HC_gene_0512_tx_23 1 - 162764 164116 . 2 79,1192 0,161 -chrII 162764 164116 HC_gene_0512_tx_24 1 - 162764 164116 . 2 521,777 0,576 -chrII 162764 164116 HC_gene_0512_tx_25 1 - 162764 164116 . 2 125,767 0,586 -chrII 162764 164116 HC_gene_0512_tx_26 1 - 162764 164116 . 2 102,1146 0,207 -chrII 162764 164116 HC_gene_0512_tx_27 1 - 162764 164116 . 2 519,334 0,1019 -chrII 162764 164116 HC_gene_0512_tx_28 1 - 162764 164116 . 2 366,64 0,1289 -chrII 164385 164567 HC_gene_0513_tx_1 1 - 164385 164567 . 1 183 0 -chrII 164385 164827 HC_gene_0513_tx_2 42 - 164385 164827 . 1 443 0 -chrII 164473 165023 MC_gene_0184_tx_1 1 + 164473 165023 . 1 551 0 -chrII 164934 166745 HC_gene_0514_tx_1 1 - 164934 166745 . 1 1812 0 -chrII 165639 166449 HC_gene_0185_tx_1 1 + 165639 166449 . 1 811 0 -chrII 166075 166745 HC_gene_0514_tx_2 3 - 166075 166745 . 1 671 0 -chrII 166075 166956 HC_gene_0514_tx_3 1 - 166075 166956 . 1 882 0 -chrII 166097 166449 HC_gene_0185_tx_2 1 + 166097 166449 . 2 34,259 0,94 -chrII 166097 166449 HC_gene_0185_tx_3 7 + 166097 166449 . 1 353 0 -chrII 167056 167878 HC_gene_0515_tx_1 1 - 167056 167878 . 1 823 0 -chrII 167147 167364 HC_gene_0186_tx_1 3 + 167147 167364 . 1 218 0 -chrII 167147 167453 HC_gene_0186_tx_2 6 + 167147 167453 . 1 307 0 -chrII 167249 167878 HC_gene_0515_tx_2 309 - 167249 167878 . 1 630 0 -chrII 167249 167878 HC_gene_0515_tx_3 1 - 167249 167878 . 2 330,255 0,375 -chrII 167427 167878 HC_gene_0515_tx_4 1 - 167427 167878 . 1 452 0 -chrII 167428 167878 HC_gene_0515_tx_5 2 - 167428 167878 . 1 451 0 -chrII 167429 167878 HC_gene_0515_tx_6 8 - 167429 167878 . 1 450 0 -chrII 167432 167878 HC_gene_0515_tx_7 1 - 167432 167878 . 1 447 0 -chrII 167433 167878 HC_gene_0515_tx_8 1 - 167433 167878 . 1 446 0 -chrII 167434 167878 HC_gene_0515_tx_9 19 - 167434 167878 . 1 445 0 -chrII 167435 167878 HC_gene_0515_tx_10 10 - 167435 167878 . 1 444 0 -chrII 167436 167878 HC_gene_0515_tx_11 2 - 167436 167878 . 1 443 0 -chrII 167438 167878 HC_gene_0515_tx_12 2 - 167438 167878 . 1 441 0 -chrII 168391 169465 HC_gene_0187_tx_1 36 + 168391 169465 . 1 1075 0 -chrII 168870 169465 HC_gene_0187_tx_2 2529 + 168870 169465 . 1 596 0 -chrII 169018 169465 HC_gene_0187_tx_3 1192 + 169018 169465 . 1 448 0 -chrII 169355 169951 HC_gene_0516_tx_1 91 - 169355 169951 . 1 597 0 -chrII 169510 169951 HC_gene_0516_tx_2 2 - 169510 169951 . 1 442 0 -chrII 170157 170430 HC_gene_0517_tx_1 1 - 170157 170430 . 1 274 0 -chrII 170348 171166 HC_gene_0188_tx_1 4 + 170348 171166 . 1 819 0 -chrII 170348 171166 HC_gene_0188_tx_2 1 + 170348 171166 . 2 320,362 0,457 -chrII 170348 171166 HC_gene_0188_tx_3 3 + 170348 171166 . 2 329,362 0,457 -chrII 170348 171166 HC_gene_0188_tx_4 1 + 170348 171166 . 2 273,362 0,457 -chrII 170551 171166 HC_gene_0188_tx_5 16 + 170551 171166 . 1 616 0 -chrII 170551 171166 HC_gene_0188_tx_6 208 + 170551 171166 . 2 126,362 0,254 -chrII 170551 171166 HC_gene_0188_tx_7 2 + 170551 171166 . 2 126,343 0,273 -chrII 170551 171166 HC_gene_0188_tx_8 1 + 170551 171166 . 2 63,366 0,250 -chrII 170551 171166 HC_gene_0188_tx_9 7 + 170551 171166 . 2 126,409 0,207 -chrII 170551 171166 HC_gene_0188_tx_10 1 + 170551 171166 . 2 102,322 0,294 -chrII 170551 171166 HC_gene_0188_tx_11 1 + 170551 171166 . 2 70,447 0,169 -chrII 170551 171166 HC_gene_0188_tx_12 2 + 170551 171166 . 2 126,344 0,272 -chrII 170551 171166 HC_gene_0188_tx_13 4 + 170551 171166 . 2 120,362 0,254 -chrII 170551 171166 HC_gene_0188_tx_14 1 + 170551 171166 . 2 126,404 0,212 -chrII 170551 171166 HC_gene_0188_tx_15 1 + 170551 171166 . 2 133,362 0,254 -chrII 170551 171166 HC_gene_0188_tx_16 1 + 170551 171166 . 2 114,362 0,254 -chrII 171042 171282 MC_gene_0518_tx_1 1 - 171042 171282 . 1 241 0 -chrII 171409 172221 LC_gene_0519_tx_1 1 - 171409 172221 . 1 813 0 -chrII 171417 172292 HC_gene_0189_tx_1 13 + 171417 172292 . 1 876 0 -chrII 171417 172436 HC_gene_0189_tx_2 7 + 171417 172436 . 1 1020 0 -chrII 171624 172436 HC_gene_0189_tx_3 2 + 171624 172436 . 1 813 0 -chrII 171686 172292 HC_gene_0189_tx_4 2 + 171686 172292 . 1 607 0 -chrII 171686 172436 HC_gene_0189_tx_5 4 + 171686 172436 . 1 751 0 -chrII 172510 174709 HC_gene_0190_tx_1 26 + 172510 174709 . 1 2200 0 -chrII 172510 174709 HC_gene_0190_tx_2 1 + 172510 174709 . 2 1156,988 0,1212 -chrII 172510 174876 HC_gene_0190_tx_3 23 + 172510 174876 . 1 2367 0 -chrII 173416 174709 HC_gene_0190_tx_4 4 + 173416 174709 . 1 1294 0 -chrII 173416 174876 HC_gene_0190_tx_5 1 + 173416 174876 . 2 799,594 0,867 -chrII 173416 174876 HC_gene_0190_tx_6 1 + 173416 174876 . 1 1461 0 -chrII 173709 174709 HC_gene_0190_tx_7 11 + 173709 174709 . 1 1001 0 -chrII 173709 174876 HC_gene_0190_tx_8 2 + 173709 174876 . 1 1168 0 -chrII 173709 174876 HC_gene_0190_tx_9 1 + 173709 174876 . 2 851,260 0,908 -chrII 174085 174709 HC_gene_0190_tx_10 6 + 174085 174709 . 1 625 0 -chrII 174085 174876 HC_gene_0190_tx_11 8 + 174085 174876 . 1 792 0 -chrII 174750 175219 HC_gene_0520_tx_1 10 - 174750 175219 . 1 470 0 -chrII 174750 177580 HC_gene_0520_tx_2 7 - 174750 177580 . 1 2831 0 -chrII 175878 177630 LC_gene_0191_tx_1 1 + 175878 177630 . 1 1753 0 -chrII 177796 178681 HC_gene_0521_tx_1 13 - 177796 178681 . 1 886 0 -chrII 177796 178681 HC_gene_0521_tx_2 1 - 177796 178681 . 2 584,242 0,644 -chrII 177796 178898 HC_gene_0521_tx_3 11 - 177796 178898 . 1 1103 0 -chrII 177796 180189 HC_gene_0521_tx_4 4 - 177796 180189 . 1 2394 0 -chrII 177796 180486 HC_gene_0521_tx_5 5 - 177796 180486 . 1 2691 0 -chrII 177796 180606 HC_gene_0521_tx_6 2 - 177796 180606 . 1 2811 0 -chrII 177796 180680 HC_gene_0521_tx_7 1 - 177796 180680 . 1 2885 0 -chrII 177796 180999 HC_gene_0521_tx_8 1 - 177796 180999 . 1 3204 0 -chrII 177796 181145 HC_gene_0521_tx_9 1 - 177796 181145 . 1 3350 0 -chrII 177796 181379 HC_gene_0521_tx_10 1 - 177796 181379 . 2 1041,2483 0,1101 -chrII 177796 181395 HC_gene_0521_tx_11 8 - 177796 181395 . 1 3600 0 -chrII 177796 181395 HC_gene_0521_tx_12 1 - 177796 181395 . 2 1855,1647 0,1953 -chrII 177796 181395 HC_gene_0521_tx_13 1 - 177796 181395 . 2 2213,1280 0,2320 -chrII 177796 181395 HC_gene_0521_tx_14 1 - 177796 181395 . 2 2215,1251 0,2349 -chrII 181487 181920 HC_gene_0522_tx_1 6 - 181487 181920 . 1 434 0 -chrII 181487 182034 HC_gene_0522_tx_2 5 - 181487 182034 . 1 548 0 -chrII 181487 182136 HC_gene_0522_tx_3 62 - 181487 182136 . 1 650 0 -chrII 182318 184216 HC_gene_0192_tx_1 26 + 182318 184216 . 1 1899 0 -chrII 184084 185143 LC_gene_0523_tx_1 1 - 184084 185143 . 1 1060 0 -chrII 184320 186027 HC_gene_0193_tx_1 5 + 184320 186027 . 1 1708 0 -chrII 184524 186027 HC_gene_0193_tx_2 2 + 184524 186027 . 1 1504 0 -chrII 185513 186508 HC_gene_0524_tx_1 3 - 185513 186508 . 1 996 0 -chrII 185513 186508 HC_gene_0524_tx_2 3 - 185513 186508 . 2 840,81 0,915 -chrII 185666 186508 HC_gene_0524_tx_3 1 - 185666 186508 . 2 687,81 0,762 -chrII 185919 186508 HC_gene_0524_tx_4 8 - 185919 186508 . 1 590 0 -chrII 185919 186508 HC_gene_0524_tx_5 54 - 185919 186508 . 2 434,81 0,509 -chrII 185919 186508 HC_gene_0524_tx_6 1 - 185919 186508 . 2 347,81 0,509 -chrII 185919 186508 HC_gene_0524_tx_7 1 - 185919 186508 . 2 434,72 0,518 -chrII 185919 186508 HC_gene_0524_tx_8 2 - 185919 186508 . 2 434,85 0,505 -chrII 185919 186508 HC_gene_0524_tx_9 1 - 185919 186508 . 2 422,81 0,509 -chrII 185919 186508 HC_gene_0524_tx_10 1 - 185919 186508 . 2 417,85 0,505 -chrII 186769 187313 HC_gene_0525_tx_1 12 - 186769 187313 . 1 545 0 -chrII 186769 187752 HC_gene_0525_tx_2 3 - 186769 187752 . 1 984 0 -chrII 186769 189750 HC_gene_0525_tx_3 3 - 186769 189750 . 1 2982 0 -chrII 186769 189868 HC_gene_0525_tx_4 4 - 186769 189868 . 1 3100 0 -chrII 186769 190035 HC_gene_0525_tx_5 1 - 186769 190035 . 2 2111,368 0,2899 -chrII 186769 190035 HC_gene_0525_tx_6 1 - 186769 190035 . 1 3267 0 -chrII 186831 187469 LC_gene_0194_tx_1 1 + 186831 187469 . 1 639 0 -chrII 190766 191749 HC_gene_0526_tx_1 1 - 190766 191749 . 1 984 0 -chrII 191978 192393 HC_gene_0195_tx_1 1 + 191978 192393 . 1 416 0 -chrII 192422 193648 HC_gene_0196_tx_1 123 + 192422 193648 . 1 1227 0 -chrII 192422 193648 HC_gene_0196_tx_2 1 + 192422 193648 . 2 1064,69 0,1158 -chrII 192422 193648 HC_gene_0196_tx_3 1 + 192422 193648 . 2 722,469 0,758 -chrII 192422 193648 HC_gene_0196_tx_4 1 + 192422 193648 . 2 140,598 0,629 -chrII 192509 193648 HC_gene_0196_tx_5 9 + 192509 193648 . 1 1140 0 -chrII 192695 193262 LC_gene_0527_tx_1 1 - 192695 193262 . 1 568 0 -chrII 193509 195693 LC_gene_0528_tx_1 1 - 193509 195693 . 1 2185 0 -chrII 194044 195871 HC_gene_0197_tx_1 3 + 194044 195871 . 1 1828 0 -chrII 196329 196711 HC_gene_0198_tx_1 8 + 196329 196711 . 1 383 0 -chrII 196517 197390 LC_gene_0529_tx_1 1 - 196517 197390 . 2 483,207 0,667 -chrII 197579 198312 HC_gene_0530_tx_1 1 - 197579 198312 . 1 734 0 -chrII 197950 198657 LC_gene_0199_tx_1 1 + 197950 198657 . 1 708 0 -chrII 198429 198738 HC_gene_0531_tx_1 3 - 198429 198738 . 1 310 0 -chrII 198902 201339 LC_gene_0200_tx_1 1 + 198902 201339 . 1 2438 0 -chrII 198919 201778 HC_gene_0532_tx_1 10 - 198919 201778 . 1 2860 0 -chrII 198919 201778 HC_gene_0532_tx_2 1 - 198919 201778 . 2 2589,207 0,2653 -chrII 201900 202235 MC_gene_0533_tx_1 1 - 201900 202235 . 1 336 0 -chrII 201989 206072 HC_gene_0201_tx_1 1 + 201989 206072 . 1 4084 0 -chrII 203355 205957 HC_gene_0201_tx_2 1 + 203355 205957 . 1 2603 0 -chrII 203355 206072 HC_gene_0201_tx_3 1 + 203355 206072 . 1 2718 0 -chrII 203436 205957 HC_gene_0201_tx_4 1 + 203436 205957 . 2 1380,1063 0,1459 -chrII 203436 205957 HC_gene_0201_tx_5 2 + 203436 205957 . 1 2522 0 -chrII 203436 206072 HC_gene_0201_tx_6 16 + 203436 206072 . 1 2637 0 -chrII 203436 206072 HC_gene_0201_tx_7 1 + 203436 206072 . 2 384,2023 0,614 -chrII 203436 206072 HC_gene_0201_tx_8 1 + 203436 206072 . 2 1050,1508 0,1129 -chrII 203543 206072 HC_gene_0201_tx_9 1 + 203543 206072 . 1 2530 0 -chrII 205171 205957 HC_gene_0201_tx_10 7 + 205171 205957 . 1 787 0 -chrII 205171 206072 HC_gene_0201_tx_11 6 + 205171 206072 . 1 902 0 -chrII 205739 205957 HC_gene_0201_tx_12 2 + 205739 205957 . 1 219 0 -chrII 205739 206072 HC_gene_0201_tx_13 8 + 205739 206072 . 1 334 0 -chrII 205799 206564 HC_gene_0534_tx_1 1 - 205799 206564 . 1 766 0 -chrII 205799 206802 HC_gene_0534_tx_2 1 - 205799 206802 . 1 1004 0 -chrII 205799 206952 HC_gene_0534_tx_3 15 - 205799 206952 . 1 1154 0 -chrII 207159 209352 HC_gene_0202_tx_1 11 + 207159 209352 . 1 2194 0 -chrII 208302 209393 LC_gene_0535_tx_1 1 - 208302 209393 . 1 1092 0 -chrII 209575 212202 HC_gene_0203_tx_1 3 + 209575 212202 . 1 2628 0 -chrII 209984 212202 HC_gene_0203_tx_2 2 + 209984 212202 . 1 2219 0 -chrII 211505 212207 LC_gene_0536_tx_1 1 - 211505 212207 . 1 703 0 -chrII 212462 212948 HC_gene_0537_tx_1 36 - 212462 212948 . 1 487 0 -chrII 212462 214611 HC_gene_0537_tx_2 10 - 212462 214611 . 1 2150 0 -chrII 212462 214611 HC_gene_0537_tx_3 1 - 212462 214611 . 2 1151,711 0,1439 -chrII 212462 214681 HC_gene_0537_tx_4 5 - 212462 214681 . 1 2220 0 -chrII 212462 214811 HC_gene_0537_tx_5 8 - 212462 214811 . 1 2350 0 -chrII 212462 216040 HC_gene_0537_tx_6 1 - 212462 216040 . 1 3579 0 -chrII 212462 216194 HC_gene_0537_tx_7 3 - 212462 216194 . 1 3733 0 -chrII 212462 216416 HC_gene_0537_tx_8 1 - 212462 216416 . 2 979,2889 0,1066 -chrII 212462 216416 HC_gene_0537_tx_9 8 - 212462 216416 . 1 3955 0 -chrII 212462 216416 HC_gene_0537_tx_10 1 - 212462 216416 . 2 1984,1911 0,2044 -chrII 212462 216416 HC_gene_0537_tx_11 1 - 212462 216416 . 2 1970,1938 0,2017 -chrII 216354 217151 HC_gene_0538_tx_1 1 - 216354 217151 . 1 798 0 -chrII 216356 216863 HC_gene_0538_tx_92 1 - 216356 216863 . 1 508 0 -chrII 216356 217151 HC_gene_0538_tx_2 4 - 216356 217151 . 1 796 0 -chrII 216358 217151 HC_gene_0538_tx_3 1 - 216358 217151 . 1 794 0 -chrII 216359 217151 HC_gene_0538_tx_4 1 - 216359 217151 . 1 793 0 -chrII 216360 216925 HC_gene_0538_tx_93 1 - 216360 216925 . 1 566 0 -chrII 216363 216701 HC_gene_0538_tx_101 1 - 216363 216701 . 1 339 0 -chrII 216363 216925 HC_gene_0538_tx_94 1 - 216363 216925 . 1 563 0 -chrII 216363 217151 HC_gene_0538_tx_5 4 - 216363 217151 . 1 789 0 -chrII 216364 217151 HC_gene_0538_tx_6 1 - 216364 217151 . 1 788 0 -chrII 216365 216701 HC_gene_0538_tx_102 1 - 216365 216701 . 1 337 0 -chrII 216367 217151 HC_gene_0538_tx_7 1 - 216367 217151 . 1 785 0 -chrII 216371 217151 HC_gene_0538_tx_8 1 - 216371 217151 . 1 781 0 -chrII 216377 216701 HC_gene_0538_tx_103 2 - 216377 216701 . 1 325 0 -chrII 216377 216925 HC_gene_0538_tx_95 1 - 216377 216925 . 1 549 0 -chrII 216377 217151 HC_gene_0538_tx_9 4 - 216377 217151 . 1 775 0 -chrII 216378 216701 HC_gene_0538_tx_104 4 - 216378 216701 . 1 324 0 -chrII 216378 216863 HC_gene_0538_tx_96 1 - 216378 216863 . 1 486 0 -chrII 216378 217151 HC_gene_0538_tx_10 9 - 216378 217151 . 1 774 0 -chrII 216379 216925 HC_gene_0538_tx_97 1 - 216379 216925 . 1 547 0 -chrII 216382 217151 HC_gene_0538_tx_11 2 - 216382 217151 . 1 770 0 -chrII 216383 217151 HC_gene_0538_tx_12 1 - 216383 217151 . 1 769 0 -chrII 216384 216701 HC_gene_0538_tx_105 1 - 216384 216701 . 1 318 0 -chrII 216384 217151 HC_gene_0538_tx_13 2 - 216384 217151 . 1 768 0 -chrII 216386 216701 HC_gene_0538_tx_106 1 - 216386 216701 . 1 316 0 -chrII 216386 217151 HC_gene_0538_tx_14 3 - 216386 217151 . 1 766 0 -chrII 216389 216701 HC_gene_0538_tx_107 1 - 216389 216701 . 1 313 0 -chrII 216390 216701 HC_gene_0538_tx_108 1 - 216390 216701 . 1 312 0 -chrII 216390 216925 HC_gene_0538_tx_98 1 - 216390 216925 . 1 536 0 -chrII 216390 217151 HC_gene_0538_tx_15 3 - 216390 217151 . 1 762 0 -chrII 216393 217151 HC_gene_0538_tx_16 1 - 216393 217151 . 1 759 0 -chrII 216394 216701 HC_gene_0538_tx_109 1 - 216394 216701 . 1 308 0 -chrII 216395 217151 HC_gene_0538_tx_17 1 - 216395 217151 . 1 757 0 -chrII 216396 216701 HC_gene_0538_tx_110 1 - 216396 216701 . 1 306 0 -chrII 216396 217151 HC_gene_0538_tx_18 2 - 216396 217151 . 1 756 0 -chrII 216397 217137 HC_gene_0538_tx_19 1 - 216397 217137 . 1 741 0 -chrII 216397 217146 HC_gene_0538_tx_20 1 - 216397 217146 . 1 750 0 -chrII 216398 217081 HC_gene_0538_tx_21 1 - 216398 217081 . 1 684 0 -chrII 216398 217122 HC_gene_0538_tx_22 1 - 216398 217122 . 1 725 0 -chrII 216398 217132 HC_gene_0538_tx_23 1 - 216398 217132 . 1 735 0 -chrII 216398 217142 HC_gene_0538_tx_24 1 - 216398 217142 . 1 745 0 -chrII 216399 217122 HC_gene_0538_tx_25 1 - 216399 217122 . 1 724 0 -chrII 216401 217086 HC_gene_0538_tx_26 1 - 216401 217086 . 1 686 0 -chrII 216402 217105 HC_gene_0538_tx_27 1 - 216402 217105 . 1 704 0 -chrII 216402 217137 HC_gene_0538_tx_28 1 - 216402 217137 . 1 736 0 -chrII 216402 217142 HC_gene_0538_tx_29 1 - 216402 217142 . 1 741 0 -chrII 216403 217088 HC_gene_0538_tx_30 1 - 216403 217088 . 1 686 0 -chrII 216403 217105 HC_gene_0538_tx_31 2 - 216403 217105 . 1 703 0 -chrII 216403 217122 HC_gene_0538_tx_32 3 - 216403 217122 . 1 720 0 -chrII 216403 217132 HC_gene_0538_tx_33 1 - 216403 217132 . 1 730 0 -chrII 216403 217134 HC_gene_0538_tx_34 1 - 216403 217134 . 1 732 0 -chrII 216403 217141 HC_gene_0538_tx_35 1 - 216403 217141 . 1 739 0 -chrII 216403 217144 HC_gene_0538_tx_36 1 - 216403 217144 . 1 742 0 -chrII 216403 217148 HC_gene_0538_tx_37 1 - 216403 217148 . 1 746 0 -chrII 216405 217143 HC_gene_0538_tx_38 1 - 216405 217143 . 1 739 0 -chrII 216407 217105 HC_gene_0538_tx_39 1 - 216407 217105 . 1 699 0 -chrII 216408 217075 HC_gene_0538_tx_40 2 - 216408 217075 . 1 668 0 -chrII 216408 217079 HC_gene_0538_tx_41 1 - 216408 217079 . 1 672 0 -chrII 216408 217090 HC_gene_0538_tx_42 2 - 216408 217090 . 1 683 0 -chrII 216408 217103 HC_gene_0538_tx_43 1 - 216408 217103 . 1 696 0 -chrII 216408 217117 HC_gene_0538_tx_44 1 - 216408 217117 . 1 710 0 -chrII 216408 217132 HC_gene_0538_tx_45 3 - 216408 217132 . 1 725 0 -chrII 216408 217142 HC_gene_0538_tx_46 1 - 216408 217142 . 1 735 0 -chrII 216408 217144 HC_gene_0538_tx_47 1 - 216408 217144 . 1 737 0 -chrII 216408 217145 HC_gene_0538_tx_48 1 - 216408 217145 . 1 738 0 -chrII 216408 217146 HC_gene_0538_tx_49 1 - 216408 217146 . 1 739 0 -chrII 216408 217149 HC_gene_0538_tx_50 3 - 216408 217149 . 1 742 0 -chrII 216409 217091 HC_gene_0538_tx_51 1 - 216409 217091 . 1 683 0 -chrII 216410 217079 HC_gene_0538_tx_52 1 - 216410 217079 . 1 670 0 -chrII 216410 217133 HC_gene_0538_tx_53 1 - 216410 217133 . 1 724 0 -chrII 216410 217137 HC_gene_0538_tx_54 1 - 216410 217137 . 1 728 0 -chrII 216410 217141 HC_gene_0538_tx_55 1 - 216410 217141 . 1 732 0 -chrII 216411 217122 HC_gene_0538_tx_56 1 - 216411 217122 . 1 712 0 -chrII 216412 217064 HC_gene_0538_tx_57 1 - 216412 217064 . 1 653 0 -chrII 216412 217069 HC_gene_0538_tx_58 1 - 216412 217069 . 1 658 0 -chrII 216412 217075 HC_gene_0538_tx_59 1 - 216412 217075 . 1 664 0 -chrII 216412 217082 HC_gene_0538_tx_60 1 - 216412 217082 . 1 671 0 -chrII 216412 217090 HC_gene_0538_tx_61 1 - 216412 217090 . 1 679 0 -chrII 216412 217105 HC_gene_0538_tx_62 1 - 216412 217105 . 1 694 0 -chrII 216412 217117 HC_gene_0538_tx_63 1 - 216412 217117 . 1 706 0 -chrII 216412 217122 HC_gene_0538_tx_64 1 - 216412 217122 . 1 711 0 -chrII 216412 217126 HC_gene_0538_tx_65 1 - 216412 217126 . 1 715 0 -chrII 216412 217131 HC_gene_0538_tx_66 1 - 216412 217131 . 1 720 0 -chrII 216412 217132 HC_gene_0538_tx_67 3 - 216412 217132 . 1 721 0 -chrII 216412 217136 HC_gene_0538_tx_68 1 - 216412 217136 . 1 725 0 -chrII 216412 217142 HC_gene_0538_tx_69 1 - 216412 217142 . 1 731 0 -chrII 216412 217144 HC_gene_0538_tx_70 1 - 216412 217144 . 1 733 0 -chrII 216412 217146 HC_gene_0538_tx_71 1 - 216412 217146 . 1 735 0 -chrII 216412 217148 HC_gene_0538_tx_72 2 - 216412 217148 . 1 737 0 -chrII 216412 217149 HC_gene_0538_tx_73 2 - 216412 217149 . 1 738 0 -chrII 216412 217150 HC_gene_0538_tx_74 1 - 216412 217150 . 1 739 0 -chrII 216413 217128 HC_gene_0538_tx_75 1 - 216413 217128 . 1 716 0 -chrII 216413 217149 HC_gene_0538_tx_76 1 - 216413 217149 . 1 737 0 -chrII 216413 217151 HC_gene_0538_tx_77 1 - 216413 217151 . 2 515,173 0,566 -chrII 216414 217146 HC_gene_0538_tx_78 1 - 216414 217146 . 1 733 0 -chrII 216415 217105 HC_gene_0538_tx_79 2 - 216415 217105 . 1 691 0 -chrII 216415 217122 HC_gene_0538_tx_80 1 - 216415 217122 . 1 708 0 -chrII 216416 217122 HC_gene_0538_tx_81 1 - 216416 217122 . 1 707 0 -chrII 216416 217137 HC_gene_0538_tx_82 1 - 216416 217137 . 1 722 0 -chrII 216417 217151 HC_gene_0538_tx_83 1 - 216417 217151 . 1 735 0 -chrII 216418 217151 HC_gene_0538_tx_84 2 - 216418 217151 . 1 734 0 -chrII 216419 217151 HC_gene_0538_tx_85 2 - 216419 217151 . 1 733 0 -chrII 216420 217151 HC_gene_0538_tx_86 1 - 216420 217151 . 1 732 0 -chrII 216422 216701 HC_gene_0538_tx_111 1 - 216422 216701 . 1 280 0 -chrII 216422 216863 HC_gene_0538_tx_99 2 - 216422 216863 . 1 442 0 -chrII 216422 216925 HC_gene_0538_tx_100 1 - 216422 216925 . 1 504 0 -chrII 216422 217151 HC_gene_0538_tx_87 7 - 216422 217151 . 1 730 0 -chrII 216505 217151 HC_gene_0538_tx_88 1 - 216505 217151 . 1 647 0 -chrII 216517 217151 HC_gene_0538_tx_89 2 - 216517 217151 . 1 635 0 -chrII 216518 217151 HC_gene_0538_tx_90 1 - 216518 217151 . 1 634 0 -chrII 216523 217151 HC_gene_0538_tx_91 1 - 216523 217151 . 1 629 0 -chrII 216728 217355 MC_gene_0204_tx_1 1 + 216728 217355 . 1 628 0 -chrII 217407 221035 HC_gene_0205_tx_1 2 + 217407 221035 . 1 3629 0 -chrII 218255 219473 MC_gene_0539_tx_1 1 - 218255 219473 . 1 1219 0 -chrII 219977 220766 HC_gene_0540_tx_1 2 - 219977 220766 . 1 790 0 -chrII 219977 221023 HC_gene_0540_tx_2 1 - 219977 221023 . 1 1047 0 -chrII 220935 221035 HC_gene_0205_tx_2 1 + 220935 221035 . 1 101 0 -chrII 222910 226968 MC_gene_0206_tx_1 1 + 222910 226968 . 1 4059 0 -chrII 223439 226894 MC_gene_0206_tx_2 1 + 223439 226894 . 1 3456 0 -chrII 224738 226893 MC_gene_0206_tx_3 1 + 224738 226893 . 1 2156 0 -chrII 227528 230193 HC_gene_0207_tx_1 2 + 227528 230193 . 1 2666 0 -chrII 227528 230323 HC_gene_0207_tx_2 3 + 227528 230323 . 1 2796 0 -chrII 227528 230694 HC_gene_0207_tx_3 1 + 227528 230694 . 2 1122,1969 0,1198 -chrII 227528 230694 HC_gene_0207_tx_4 1 + 227528 230694 . 1 3167 0 -chrII 231512 231940 MC_gene_0208_tx_1 1 + 231512 231940 . 2 137,183 0,246 -chrII 231624 232066 MC_gene_0209_tx_1 1 + 231624 232066 . 1 443 0 -chrII 233031 233507 HC_gene_0210_tx_1 1 + 233031 233507 . 1 477 0 -chrII 234245 234867 HC_gene_0211_tx_1 1 + 234245 234867 . 1 623 0 -chrII 234245 235178 HC_gene_0211_tx_2 11 + 234245 235178 . 1 934 0 -chrII 234385 234867 HC_gene_0211_tx_5 1 + 234385 234867 . 1 483 0 -chrII 234385 235178 HC_gene_0211_tx_3 9 + 234385 235178 . 1 794 0 -chrII 234385 235293 HC_gene_0211_tx_4 2 + 234385 235293 . 1 909 0 -chrII 234659 235178 HC_gene_0211_tx_6 6 + 234659 235178 . 1 520 0 -chrII 234659 235293 HC_gene_0211_tx_7 1 + 234659 235293 . 1 635 0 -chrII 234712 235178 HC_gene_0211_tx_8 6 + 234712 235178 . 1 467 0 -chrII 234776 235178 HC_gene_0211_tx_9 15 + 234776 235178 . 1 403 0 -chrII 234776 235293 HC_gene_0211_tx_10 2 + 234776 235293 . 1 518 0 -chrII 235104 235588 HC_gene_0541_tx_1 142 - 235104 235588 . 1 485 0 -chrII 235104 235679 HC_gene_0541_tx_2 116 - 235104 235679 . 1 576 0 -chrII 235104 235820 HC_gene_0541_tx_3 2205 - 235104 235820 . 1 717 0 -chrII 235778 235984 HC_gene_0542_tx_1 1 - 235778 235984 . 1 207 0 -chrII 236070 236400 MC_gene_0212_tx_1 1 + 236070 236400 . 1 331 0 -chrII 236468 236982 HC_gene_0213_tx_1 5 + 236468 236982 . 1 515 0 -chrII 236468 236984 HC_gene_0213_tx_2 3 + 236468 236984 . 1 517 0 -chrII 236468 237082 HC_gene_0213_tx_3 1672 + 236468 237082 . 1 615 0 -chrII 236794 237082 HC_gene_0213_tx_4 82 + 236794 237082 . 1 289 0 -chrII 236855 237082 HC_gene_0213_tx_5 130 + 236855 237082 . 1 228 0 -chrII 236903 237315 HC_gene_0543_tx_1 7 - 236903 237315 . 1 413 0 -chrII 236903 237479 HC_gene_0543_tx_3 45 - 236903 237479 . 1 577 0 -chrII 236969 237315 HC_gene_0543_tx_2 12 - 236969 237315 . 1 347 0 -chrII 236969 237479 HC_gene_0543_tx_4 88 - 236969 237479 . 1 511 0 -chrII 237074 237315 HC_gene_0543_tx_5 47 - 237074 237315 . 1 242 0 -chrII 237074 237479 HC_gene_0543_tx_6 480 - 237074 237479 . 1 406 0 -chrII 237772 238064 MC_gene_0544_tx_1 1 - 237772 238064 . 1 293 0 -chrII 238522 238977 HC_gene_0214_tx_1 18 + 238522 238977 . 1 456 0 -chrII 238761 241135 HC_gene_0545_tx_1 1 - 238761 241135 . 1 2375 0 -chrII 238761 241425 HC_gene_0545_tx_2 1 - 238761 241425 . 1 2665 0 -chrII 238872 240672 HC_gene_0545_tx_3 1 - 238872 240672 . 1 1801 0 -chrII 238872 240974 HC_gene_0545_tx_4 1 - 238872 240974 . 1 2103 0 -chrII 238872 241243 HC_gene_0545_tx_5 1 - 238872 241243 . 1 2372 0 -chrII 238872 241340 HC_gene_0545_tx_6 1 - 238872 241340 . 1 2469 0 -chrII 238872 241425 HC_gene_0545_tx_7 4 - 238872 241425 . 1 2554 0 -chrII 238872 241425 HC_gene_0545_tx_8 1 - 238872 241425 . 2 1356,1088 0,1466 -chrII 239518 241413 LC_gene_0215_tx_1 1 + 239518 241413 . 1 1896 0 -chrII 241505 242594 HC_gene_0546_tx_1 77 - 241505 242594 . 1 1090 0 -chrII 241505 242594 HC_gene_0546_tx_2 1 - 241505 242594 . 2 211,704 0,386 -chrII 241673 242179 MC_gene_0216_tx_1 1 + 241673 242179 . 1 507 0 -chrII 242776 244365 HC_gene_0217_tx_1 30 + 242776 244365 . 1 1590 0 -chrII 242776 244365 HC_gene_0217_tx_2 1 + 242776 244365 . 2 592,955 0,635 -chrII 242776 244365 HC_gene_0217_tx_3 1 + 242776 244365 . 2 661,782 0,808 -chrII 242776 244475 HC_gene_0217_tx_4 3 + 242776 244475 . 1 1700 0 -chrII 242951 244365 HC_gene_0217_tx_5 3 + 242951 244365 . 1 1415 0 -chrII 243468 244365 HC_gene_0217_tx_6 5 + 243468 244365 . 1 898 0 -chrII 244272 244748 HC_gene_0547_tx_1 12 - 244272 244748 . 1 477 0 -chrII 244272 245099 HC_gene_0547_tx_3 9 - 244272 245099 . 1 828 0 -chrII 244272 245530 HC_gene_0547_tx_5 3 - 244272 245530 . 1 1259 0 -chrII 244272 245684 HC_gene_0547_tx_6 40 - 244272 245684 . 1 1413 0 -chrII 244342 244748 HC_gene_0547_tx_2 2 - 244342 244748 . 1 407 0 -chrII 244342 245099 HC_gene_0547_tx_4 2 - 244342 245099 . 1 758 0 -chrII 244342 245530 HC_gene_0547_tx_7 2 - 244342 245530 . 1 1189 0 -chrII 244342 245684 HC_gene_0547_tx_8 11 - 244342 245684 . 1 1343 0 -chrII 245875 246699 HC_gene_0218_tx_1 90 + 245875 246699 . 1 825 0 -chrII 246115 246699 HC_gene_0218_tx_2 8 + 246115 246699 . 1 585 0 -chrII 246273 246699 HC_gene_0218_tx_3 4 + 246273 246699 . 1 427 0 -chrII 246635 247815 LC_gene_0548_tx_1 1 - 246635 247815 . 1 1181 0 -chrII 246878 248646 HC_gene_0219_tx_1 15 + 246878 248646 . 1 1769 0 -chrII 246878 248646 HC_gene_0219_tx_2 1 + 246878 248646 . 3 142,499,974 0,185,795 -chrII 246969 248646 HC_gene_0219_tx_3 9 + 246969 248646 . 1 1678 0 -chrII 247246 248646 HC_gene_0219_tx_4 2 + 247246 248646 . 1 1401 0 -chrII 247580 248646 HC_gene_0219_tx_5 8 + 247580 248646 . 1 1067 0 -chrII 247791 248646 HC_gene_0219_tx_6 1 + 247791 248646 . 1 856 0 -chrII 248074 248646 HC_gene_0219_tx_7 11 + 248074 248646 . 1 573 0 -chrII 248172 248646 HC_gene_0219_tx_8 9 + 248172 248646 . 1 475 0 -chrII 248518 250969 HC_gene_0549_tx_1 2 - 248518 250969 . 1 2452 0 -chrII 248518 251107 HC_gene_0549_tx_2 1 - 248518 251107 . 1 2590 0 -chrII 248660 250969 HC_gene_0549_tx_3 4 - 248660 250969 . 1 2310 0 -chrII 249356 250291 MC_gene_0220_tx_1 1 + 249356 250291 . 1 936 0 -chrII 251716 252122 HC_gene_0221_tx_1 5 + 251716 252122 . 1 407 0 -chrII 251716 252282 HC_gene_0221_tx_2 8 + 251716 252282 . 1 567 0 -chrII 251883 254890 HC_gene_0550_tx_1 1 - 251883 254890 . 1 3008 0 -chrII 252401 254428 HC_gene_0550_tx_2 8 - 252401 254428 . 1 2028 0 -chrII 252401 254890 HC_gene_0550_tx_3 3 - 252401 254890 . 1 2490 0 -chrII 252523 254428 HC_gene_0550_tx_4 1 - 252523 254428 . 1 1906 0 -chrII 252523 254890 HC_gene_0550_tx_5 1 - 252523 254890 . 1 2368 0 -chrII 252523 255721 HC_gene_0551_tx_1 1 - 252523 255721 . 1 3199 0 -chrII 254630 255040 MC_gene_0222_tx_1 1 + 254630 255040 . 1 411 0 -chrII 254867 255441 HC_gene_0551_tx_2 1 - 254867 255441 . 1 575 0 -chrII 254867 255721 HC_gene_0551_tx_3 4 - 254867 255721 . 1 855 0 -chrII 255028 255555 HC_gene_0551_tx_4 1 - 255028 255555 . 1 528 0 -chrII 255033 255555 HC_gene_0551_tx_5 1 - 255033 255555 . 1 523 0 -chrII 255049 255721 HC_gene_0551_tx_6 1 - 255049 255721 . 1 673 0 -chrII 255053 255721 HC_gene_0551_tx_7 1 - 255053 255721 . 1 669 0 -chrII 255066 255721 HC_gene_0551_tx_8 1 - 255066 255721 . 1 656 0 -chrII 255070 255721 HC_gene_0551_tx_9 1 - 255070 255721 . 1 652 0 -chrII 255072 255286 LC_gene_0223_tx_1 1 + 255072 255286 . 1 215 0 -chrII 255072 255721 HC_gene_0551_tx_10 1 - 255072 255721 . 1 650 0 -chrII 255074 255721 HC_gene_0551_tx_11 1 - 255074 255721 . 1 648 0 -chrII 255080 255721 HC_gene_0551_tx_12 1 - 255080 255721 . 1 642 0 -chrII 255083 255721 HC_gene_0551_tx_13 2 - 255083 255721 . 1 639 0 -chrII 255108 255721 HC_gene_0551_tx_14 1 - 255108 255721 . 1 614 0 -chrII 255112 255721 HC_gene_0551_tx_15 1 - 255112 255721 . 1 610 0 -chrII 255142 255721 HC_gene_0551_tx_16 1 - 255142 255721 . 1 580 0 -chrII 255145 255721 HC_gene_0551_tx_17 1 - 255145 255721 . 1 577 0 -chrII 255147 255721 HC_gene_0551_tx_18 1 - 255147 255721 . 1 575 0 -chrII 255155 255721 HC_gene_0551_tx_19 1 - 255155 255721 . 1 567 0 -chrII 255157 255555 HC_gene_0551_tx_84 1 - 255157 255555 . 1 399 0 -chrII 255158 255721 HC_gene_0551_tx_20 1 - 255158 255721 . 1 564 0 -chrII 255162 255721 HC_gene_0551_tx_21 1 - 255162 255721 . 1 560 0 -chrII 255171 255721 HC_gene_0551_tx_22 2 - 255171 255721 . 1 551 0 -chrII 255174 255441 HC_gene_0551_tx_122 1 - 255174 255441 . 1 268 0 -chrII 255177 255721 HC_gene_0551_tx_23 2 - 255177 255721 . 1 545 0 -chrII 255180 255721 HC_gene_0551_tx_24 1 - 255180 255721 . 1 542 0 -chrII 255181 255555 HC_gene_0551_tx_85 1 - 255181 255555 . 1 375 0 -chrII 255182 255721 HC_gene_0551_tx_25 5 - 255182 255721 . 1 540 0 -chrII 255183 255721 HC_gene_0551_tx_26 1 - 255183 255721 . 1 539 0 -chrII 255184 255721 HC_gene_0551_tx_27 1 - 255184 255721 . 1 538 0 -chrII 255185 255441 HC_gene_0551_tx_123 1 - 255185 255441 . 1 257 0 -chrII 255185 255555 HC_gene_0551_tx_86 1 - 255185 255555 . 1 371 0 -chrII 255185 255721 HC_gene_0551_tx_28 13 - 255185 255721 . 1 537 0 -chrII 255186 255441 HC_gene_0551_tx_124 2 - 255186 255441 . 1 256 0 -chrII 255186 255555 HC_gene_0551_tx_87 3 - 255186 255555 . 1 370 0 -chrII 255186 255721 HC_gene_0551_tx_29 30 - 255186 255721 . 1 536 0 -chrII 255187 255721 HC_gene_0551_tx_30 2 - 255187 255721 . 1 535 0 -chrII 255188 255555 HC_gene_0551_tx_88 2 - 255188 255555 . 1 368 0 -chrII 255188 255721 HC_gene_0551_tx_31 3 - 255188 255721 . 1 534 0 -chrII 255188 255818 HC_gene_0551_tx_32 1 - 255188 255818 . 1 631 0 -chrII 255189 255721 HC_gene_0551_tx_33 5 - 255189 255721 . 1 533 0 -chrII 255190 255721 HC_gene_0551_tx_34 8 - 255190 255721 . 1 532 0 -chrII 255191 255441 HC_gene_0551_tx_125 2 - 255191 255441 . 1 251 0 -chrII 255191 255555 HC_gene_0551_tx_89 1 - 255191 255555 . 1 365 0 -chrII 255191 255721 HC_gene_0551_tx_35 21 - 255191 255721 . 1 531 0 -chrII 255192 255441 HC_gene_0551_tx_126 11 - 255192 255441 . 1 250 0 -chrII 255192 255555 HC_gene_0551_tx_90 13 - 255192 255555 . 1 364 0 -chrII 255192 255721 HC_gene_0551_tx_36 92 - 255192 255721 . 1 530 0 -chrII 255193 255441 HC_gene_0551_tx_127 1 - 255193 255441 . 1 249 0 -chrII 255193 255555 HC_gene_0551_tx_91 2 - 255193 255555 . 1 363 0 -chrII 255193 255721 HC_gene_0551_tx_37 38 - 255193 255721 . 1 529 0 -chrII 255193 255818 HC_gene_0551_tx_38 1 - 255193 255818 . 1 626 0 -chrII 255194 255441 HC_gene_0551_tx_128 1 - 255194 255441 . 1 248 0 -chrII 255194 255555 HC_gene_0551_tx_92 2 - 255194 255555 . 1 362 0 -chrII 255194 255721 HC_gene_0551_tx_39 13 - 255194 255721 . 1 528 0 -chrII 255195 255441 HC_gene_0551_tx_129 17 - 255195 255441 . 1 247 0 -chrII 255195 255555 HC_gene_0551_tx_93 14 - 255195 255555 . 1 361 0 -chrII 255195 255721 HC_gene_0551_tx_40 199 - 255195 255721 . 1 527 0 -chrII 255195 255818 HC_gene_0551_tx_41 1 - 255195 255818 . 1 624 0 -chrII 255196 255721 HC_gene_0551_tx_42 6 - 255196 255721 . 1 526 0 -chrII 255197 255441 HC_gene_0551_tx_130 3 - 255197 255441 . 1 245 0 -chrII 255197 255555 HC_gene_0551_tx_94 4 - 255197 255555 . 1 359 0 -chrII 255197 255721 HC_gene_0551_tx_43 36 - 255197 255721 . 1 525 0 -chrII 255198 255441 HC_gene_0551_tx_131 20 - 255198 255441 . 1 244 0 -chrII 255198 255555 HC_gene_0551_tx_95 31 - 255198 255555 . 1 358 0 -chrII 255198 255721 HC_gene_0551_tx_44 262 - 255198 255721 . 1 524 0 -chrII 255198 255818 HC_gene_0551_tx_45 3 - 255198 255818 . 1 621 0 -chrII 255199 255721 HC_gene_0551_tx_46 11 - 255199 255721 . 1 523 0 -chrII 255200 255441 HC_gene_0551_tx_132 1 - 255200 255441 . 1 242 0 -chrII 255200 255555 HC_gene_0551_tx_96 4 - 255200 255555 . 1 356 0 -chrII 255200 255721 HC_gene_0551_tx_47 66 - 255200 255721 . 1 522 0 -chrII 255201 255441 HC_gene_0551_tx_133 4 - 255201 255441 . 1 241 0 -chrII 255201 255555 HC_gene_0551_tx_97 3 - 255201 255555 . 1 355 0 -chrII 255201 255716 HC_gene_0551_tx_48 1 - 255201 255716 . 2 170,282 0,234 -chrII 255201 255721 HC_gene_0551_tx_49 67 - 255201 255721 . 1 521 0 -chrII 255202 255441 HC_gene_0551_tx_134 4 - 255202 255441 . 1 240 0 -chrII 255202 255555 HC_gene_0551_tx_98 2 - 255202 255555 . 1 354 0 -chrII 255202 255721 HC_gene_0551_tx_50 26 - 255202 255721 . 1 520 0 -chrII 255203 255441 HC_gene_0551_tx_135 1 - 255203 255441 . 1 239 0 -chrII 255203 255721 HC_gene_0551_tx_51 14 - 255203 255721 . 1 519 0 -chrII 255204 255441 HC_gene_0551_tx_136 3 - 255204 255441 . 1 238 0 -chrII 255204 255555 HC_gene_0551_tx_99 9 - 255204 255555 . 1 352 0 -chrII 255204 255721 HC_gene_0551_tx_52 99 - 255204 255721 . 1 518 0 -chrII 255205 255555 HC_gene_0551_tx_100 1 - 255205 255555 . 1 351 0 -chrII 255205 255721 HC_gene_0551_tx_53 16 - 255205 255721 . 1 517 0 -chrII 255206 255441 HC_gene_0551_tx_137 28 - 255206 255441 . 1 236 0 -chrII 255206 255555 HC_gene_0551_tx_101 29 - 255206 255555 . 1 350 0 -chrII 255206 255721 HC_gene_0551_tx_54 413 - 255206 255721 . 1 516 0 -chrII 255206 255818 HC_gene_0551_tx_55 2 - 255206 255818 . 1 613 0 -chrII 255207 255441 HC_gene_0551_tx_138 7 - 255207 255441 . 1 235 0 -chrII 255207 255555 HC_gene_0551_tx_102 11 - 255207 255555 . 1 349 0 -chrII 255207 255721 HC_gene_0551_tx_56 99 - 255207 255721 . 1 515 0 -chrII 255207 255818 HC_gene_0551_tx_57 2 - 255207 255818 . 1 612 0 -chrII 255208 255441 HC_gene_0551_tx_139 3 - 255208 255441 . 1 234 0 -chrII 255208 255721 HC_gene_0551_tx_58 28 - 255208 255721 . 1 514 0 -chrII 255209 255721 HC_gene_0551_tx_59 10 - 255209 255721 . 1 513 0 -chrII 255210 255441 HC_gene_0551_tx_140 2 - 255210 255441 . 1 232 0 -chrII 255210 255555 HC_gene_0551_tx_103 4 - 255210 255555 . 1 346 0 -chrII 255210 255721 HC_gene_0551_tx_60 40 - 255210 255721 . 1 512 0 -chrII 255210 255818 HC_gene_0551_tx_61 1 - 255210 255818 . 1 609 0 -chrII 255211 255441 HC_gene_0551_tx_141 5 - 255211 255441 . 1 231 0 -chrII 255211 255555 HC_gene_0551_tx_104 2 - 255211 255555 . 1 345 0 -chrII 255211 255721 HC_gene_0551_tx_62 74 - 255211 255721 . 1 511 0 -chrII 255211 255818 HC_gene_0551_tx_63 1 - 255211 255818 . 1 608 0 -chrII 255212 255441 HC_gene_0551_tx_142 1 - 255212 255441 . 1 230 0 -chrII 255212 255555 HC_gene_0551_tx_105 2 - 255212 255555 . 1 344 0 -chrII 255212 255721 HC_gene_0551_tx_64 6 - 255212 255721 . 1 510 0 -chrII 255213 255441 HC_gene_0551_tx_143 9 - 255213 255441 . 1 229 0 -chrII 255213 255555 HC_gene_0551_tx_106 8 - 255213 255555 . 1 343 0 -chrII 255213 255721 HC_gene_0551_tx_65 129 - 255213 255721 . 1 509 0 -chrII 255213 255818 HC_gene_0551_tx_66 1 - 255213 255818 . 2 32,451 0,155 -chrII 255214 255441 HC_gene_0551_tx_144 4 - 255214 255441 . 1 228 0 -chrII 255214 255555 HC_gene_0551_tx_107 8 - 255214 255555 . 1 342 0 -chrII 255214 255721 HC_gene_0551_tx_67 75 - 255214 255721 . 1 508 0 -chrII 255215 255441 HC_gene_0551_tx_145 2 - 255215 255441 . 1 227 0 -chrII 255215 255555 HC_gene_0551_tx_108 5 - 255215 255555 . 1 341 0 -chrII 255215 255721 HC_gene_0551_tx_68 75 - 255215 255721 . 1 507 0 -chrII 255216 255441 HC_gene_0551_tx_146 2 - 255216 255441 . 1 226 0 -chrII 255216 255555 HC_gene_0551_tx_109 4 - 255216 255555 . 1 340 0 -chrII 255216 255721 HC_gene_0551_tx_69 82 - 255216 255721 . 1 506 0 -chrII 255217 255555 HC_gene_0551_tx_110 1 - 255217 255555 . 1 339 0 -chrII 255217 255721 HC_gene_0551_tx_70 23 - 255217 255721 . 1 505 0 -chrII 255218 255555 HC_gene_0551_tx_111 1 - 255218 255555 . 1 338 0 -chrII 255218 255721 HC_gene_0551_tx_71 9 - 255218 255721 . 1 504 0 -chrII 255219 255441 HC_gene_0551_tx_147 5 - 255219 255441 . 1 223 0 -chrII 255219 255555 HC_gene_0551_tx_112 7 - 255219 255555 . 1 337 0 -chrII 255219 255721 HC_gene_0551_tx_72 27 - 255219 255721 . 1 503 0 -chrII 255220 255441 HC_gene_0551_tx_148 7 - 255220 255441 . 1 222 0 -chrII 255220 255555 HC_gene_0551_tx_113 9 - 255220 255555 . 1 336 0 -chrII 255220 255721 HC_gene_0551_tx_73 99 - 255220 255721 . 1 502 0 -chrII 255220 255818 HC_gene_0551_tx_74 1 - 255220 255818 . 1 599 0 -chrII 255220 255818 HC_gene_0551_tx_75 1 - 255220 255818 . 2 289,234 0,365 -chrII 255221 255441 HC_gene_0551_tx_149 3 - 255221 255441 . 1 221 0 -chrII 255221 255555 HC_gene_0551_tx_114 2 - 255221 255555 . 1 335 0 -chrII 255221 255721 HC_gene_0551_tx_76 49 - 255221 255721 . 1 501 0 -chrII 255222 255441 HC_gene_0551_tx_150 3 - 255222 255441 . 1 220 0 -chrII 255222 255555 HC_gene_0551_tx_115 3 - 255222 255555 . 1 334 0 -chrII 255222 255721 HC_gene_0551_tx_77 86 - 255222 255721 . 1 500 0 -chrII 255223 255441 HC_gene_0551_tx_151 1 - 255223 255441 . 1 219 0 -chrII 255223 255555 HC_gene_0551_tx_116 1 - 255223 255555 . 1 333 0 -chrII 255223 255721 HC_gene_0551_tx_78 17 - 255223 255721 . 1 499 0 -chrII 255224 255555 HC_gene_0551_tx_117 3 - 255224 255555 . 1 332 0 -chrII 255224 255721 HC_gene_0551_tx_79 15 - 255224 255721 . 1 498 0 -chrII 255225 255441 HC_gene_0551_tx_152 1 - 255225 255441 . 1 217 0 -chrII 255225 255555 HC_gene_0551_tx_118 2 - 255225 255555 . 1 331 0 -chrII 255225 255721 HC_gene_0551_tx_80 50 - 255225 255721 . 1 497 0 -chrII 255226 255555 HC_gene_0551_tx_119 1 - 255226 255555 . 1 330 0 -chrII 255226 255721 HC_gene_0551_tx_81 11 - 255226 255721 . 1 496 0 -chrII 255227 255555 HC_gene_0551_tx_120 1 - 255227 255555 . 1 329 0 -chrII 255227 255721 HC_gene_0551_tx_82 32 - 255227 255721 . 1 495 0 -chrII 255228 255555 HC_gene_0551_tx_121 1 - 255228 255555 . 1 328 0 -chrII 255228 255721 HC_gene_0551_tx_83 2 - 255228 255721 . 1 494 0 -chrII 256302 256903 HC_gene_0224_tx_1 2863 + 256302 256903 . 1 602 0 -chrII 256302 257100 HC_gene_0224_tx_3 4 + 256302 257100 . 1 799 0 -chrII 256370 256903 HC_gene_0224_tx_2 114 + 256370 256903 . 1 534 0 -chrII 256998 257257 HC_gene_0552_tx_1 70 - 256998 257257 . 1 260 0 -chrII 256998 257424 HC_gene_0552_tx_2 287 - 256998 257424 . 1 427 0 -chrII 256998 257533 HC_gene_0552_tx_3 188 - 256998 257533 . 1 536 0 -chrII 256998 257750 HC_gene_0552_tx_4 115 - 256998 257750 . 1 753 0 -chrII 256998 257906 HC_gene_0552_tx_5 96 - 256998 257906 . 1 909 0 -chrII 256998 258006 HC_gene_0552_tx_6 950 - 256998 258006 . 1 1009 0 -chrII 258263 259001 MC_gene_0225_tx_1 1 + 258263 259001 . 1 739 0 -chrII 258697 259561 MC_gene_0553_tx_1 1 - 258697 259561 . 1 865 0 -chrII 258945 266068 MC_gene_0553_tx_2 1 - 258945 266068 . 2 628,573 0,6551 -chrII 258948 259393 MC_gene_0553_tx_3 1 - 258948 259393 . 1 446 0 -chrII 259829 265463 LC_gene_0226_tx_1 1 + 259829 265463 . 2 3359,2194 0,3441 -chrII 265776 266229 LC_gene_0227_tx_1 1 + 265776 266229 . 1 454 0 -chrII 266613 267090 HC_gene_0554_tx_1 13 - 266613 267090 . 1 478 0 -chrII 266613 267420 HC_gene_0554_tx_2 82 - 266613 267420 . 1 808 0 -chrII 266909 267367 LC_gene_0228_tx_1 1 + 266909 267367 . 1 459 0 -chrII 267537 268216 HC_gene_0555_tx_1 14 - 267537 268216 . 1 680 0 -chrII 267537 268613 HC_gene_0555_tx_2 19 - 267537 268613 . 1 1077 0 -chrII 267537 269166 HC_gene_0555_tx_3 9 - 267537 269166 . 1 1630 0 -chrII 267537 269597 HC_gene_0555_tx_4 68 - 267537 269597 . 1 2061 0 -chrII 267537 269597 HC_gene_0555_tx_5 1 - 267537 269597 . 2 1015,946 0,1115 -chrII 267537 269597 HC_gene_0555_tx_6 1 - 267537 269597 . 2 881,130 0,1931 -chrII 267537 269597 HC_gene_0555_tx_7 1 - 267537 269597 . 2 850,1124 0,937 -chrII 267537 269597 HC_gene_0555_tx_8 1 - 267537 269597 . 2 809,1199 0,862 -chrII 270216 270841 HC_gene_0229_tx_1 166 + 270216 270841 . 1 626 0 -chrII 270216 270958 HC_gene_0229_tx_2 36 + 270216 270958 . 1 743 0 -chrII 270351 270841 HC_gene_0229_tx_3 88 + 270351 270841 . 1 491 0 -chrII 270351 270958 HC_gene_0229_tx_4 11 + 270351 270958 . 1 608 0 -chrII 270744 271418 HC_gene_0556_tx_1 4 - 270744 271418 . 1 675 0 -chrII 270744 272138 HC_gene_0556_tx_3 2 - 270744 272138 . 1 1395 0 -chrII 270744 272809 HC_gene_0556_tx_5 1 - 270744 272809 . 1 2066 0 -chrII 270835 271418 HC_gene_0556_tx_2 10 - 270835 271418 . 1 584 0 -chrII 270835 272138 HC_gene_0556_tx_4 7 - 270835 272138 . 1 1304 0 -chrII 270835 272809 HC_gene_0556_tx_6 3 - 270835 272809 . 1 1975 0 -chrII 270835 272809 HC_gene_0556_tx_7 1 - 270835 272809 . 2 90,1828 0,147 -chrII 272938 273751 HC_gene_0557_tx_1 1 - 272938 273751 . 1 814 0 -chrII 272955 273436 HC_gene_0557_tx_2 1 - 272955 273436 . 1 482 0 -chrII 274320 275600 MC_gene_0558_tx_1 1 - 274320 275600 . 1 1281 0 -chrII 274322 275663 MC_gene_0558_tx_2 1 - 274322 275663 . 1 1342 0 -chrII 276142 276529 HC_gene_0559_tx_1 20 - 276142 276529 . 1 388 0 -chrII 276815 283501 HC_gene_0230_tx_1 1 + 276815 283501 . 1 6687 0 -chrII 280581 280893 MC_gene_0560_tx_1 1 - 280581 280893 . 1 313 0 -chrII 281306 283494 HC_gene_0231_tx_1 1 + 281306 283494 . 1 2189 0 -chrII 281306 283505 HC_gene_0231_tx_2 1 + 281306 283505 . 1 2200 0 -chrII 281306 283513 HC_gene_0231_tx_3 1 + 281306 283513 . 1 2208 0 -chrII 281306 283515 HC_gene_0231_tx_4 2 + 281306 283515 . 1 2210 0 -chrII 281383 283515 HC_gene_0231_tx_5 1 + 281383 283515 . 1 2133 0 -chrII 283312 283531 HC_gene_0561_tx_1 2 - 283312 283531 . 1 220 0 -chrII 283675 284430 HC_gene_0232_tx_1 47 + 283675 284430 . 1 756 0 -chrII 284070 284430 HC_gene_0232_tx_2 5 + 284070 284430 . 1 361 0 -chrII 284297 285926 HC_gene_0562_tx_1 8 - 284297 285926 . 1 1630 0 -chrII 284297 288070 HC_gene_0562_tx_2 7 - 284297 288070 . 1 3774 0 -chrII 288300 288829 HC_gene_0233_tx_1 3 + 288300 288829 . 1 530 0 -chrII 288341 289176 MC_gene_0563_tx_1 1 - 288341 289176 . 1 836 0 -chrII 289335 290473 HC_gene_0234_tx_1 10 + 289335 290473 . 1 1139 0 -chrII 289335 290560 HC_gene_0234_tx_2 36 + 289335 290560 . 1 1226 0 -chrII 289335 290680 HC_gene_0234_tx_3 4 + 289335 290680 . 1 1346 0 -chrII 290311 290560 HC_gene_0234_tx_4 7 + 290311 290560 . 1 250 0 -chrII 290462 290746 HC_gene_0564_tx_1 124 - 290462 290746 . 1 285 0 -chrII 290462 291111 HC_gene_0564_tx_2 109 - 290462 291111 . 1 650 0 -chrII 290462 291343 HC_gene_0564_tx_3 155 - 290462 291343 . 1 882 0 -chrII 290462 291456 HC_gene_0564_tx_4 124 - 290462 291456 . 1 995 0 -chrII 290462 291903 HC_gene_0564_tx_5 647 - 290462 291903 . 1 1442 0 -chrII 291927 292474 MC_gene_0235_tx_1 1 + 291927 292474 . 1 548 0 -chrII 292633 292826 HC_gene_0236_tx_1 1 + 292633 292826 . 1 194 0 -chrII 292760 293257 HC_gene_0565_tx_1 12 - 292760 293257 . 1 498 0 -chrII 292760 293733 HC_gene_0565_tx_2 3 - 292760 293733 . 1 974 0 -chrII 292760 293733 HC_gene_0565_tx_3 1 - 292760 293733 . 2 467,264 0,710 -chrII 292760 294088 HC_gene_0565_tx_4 53 - 292760 294088 . 1 1329 0 -chrII 292760 294088 HC_gene_0565_tx_5 1 - 292760 294088 . 2 850,355 0,974 -chrII 294247 296064 HC_gene_0566_tx_1 27 - 294247 296064 . 1 1818 0 -chrII 294247 296064 HC_gene_0566_tx_2 1 - 294247 296064 . 2 698,1045 0,773 -chrII 294379 296064 HC_gene_0566_tx_3 7 - 294379 296064 . 1 1686 0 -chrII 296058 296386 MC_gene_0237_tx_1 1 + 296058 296386 . 1 329 0 -chrII 296217 296703 HC_gene_0567_tx_1 15 - 296217 296703 . 1 487 0 -chrII 296217 296968 HC_gene_0567_tx_2 16 - 296217 296968 . 1 752 0 -chrII 296217 297822 HC_gene_0567_tx_3 83 - 296217 297822 . 1 1606 0 -chrII 296217 297822 HC_gene_0567_tx_4 1 - 296217 297822 . 2 948,510 0,1096 -chrII 296217 297822 HC_gene_0567_tx_5 1 - 296217 297822 . 2 842,215 0,1391 -chrII 296281 297342 MC_gene_0238_tx_1 1 + 296281 297342 . 1 1062 0 -chrII 298061 300010 HC_gene_0239_tx_1 1 + 298061 300010 . 1 1950 0 -chrII 298222 300010 HC_gene_0239_tx_2 13 + 298222 300010 . 1 1789 0 -chrII 298222 300010 HC_gene_0239_tx_3 1 + 298222 300010 . 2 756,953 0,836 -chrII 298222 300098 HC_gene_0239_tx_4 1 + 298222 300098 . 1 1877 0 -chrII 299446 299872 LC_gene_0568_tx_1 1 - 299446 299872 . 1 427 0 -chrII 300149 301344 HC_gene_0240_tx_1 2631 + 300149 301344 . 1 1196 0 -chrII 300149 301963 HC_gene_0240_tx_2 19 + 300149 301963 . 1 1815 0 -chrII 300496 301344 HC_gene_0240_tx_3 311 + 300496 301344 . 1 849 0 -chrII 300952 301344 HC_gene_0240_tx_4 770 + 300952 301344 . 1 393 0 -chrII 301340 304497 HC_gene_0569_tx_1 1 - 301340 304497 . 1 3158 0 -chrII 301738 306000 HC_gene_0569_tx_2 1 - 301738 306000 . 2 3257,482 0,3781 -chrII 303302 304497 HC_gene_0569_tx_3 1 - 303302 304497 . 1 1196 0 -chrII 303879 304795 HC_gene_0241_tx_1 5 + 303879 304795 . 1 917 0 -chrII 304449 306000 HC_gene_0569_tx_4 1 - 304449 306000 . 1 1552 0 -chrII 304656 305404 HC_gene_0569_tx_11 2 - 304656 305404 . 1 749 0 -chrII 304656 306000 HC_gene_0569_tx_5 1 - 304656 306000 . 1 1345 0 -chrII 304739 305404 HC_gene_0569_tx_12 22 - 304739 305404 . 1 666 0 -chrII 304739 306000 HC_gene_0569_tx_6 235 - 304739 306000 . 1 1262 0 -chrII 304739 306000 HC_gene_0569_tx_7 1 - 304739 306000 . 2 334,262 0,1000 -chrII 304739 306000 HC_gene_0569_tx_8 1 - 304739 306000 . 2 493,699 0,563 -chrII 304739 306000 HC_gene_0569_tx_9 1 - 304739 306000 . 2 482,726 0,536 -chrII 304739 306000 HC_gene_0569_tx_10 1 - 304739 306000 . 3 389,182,482 0,430,780 -chrII 306169 306509 HC_gene_0570_tx_1 24 - 306169 306509 . 1 341 0 -chrII 306169 306682 HC_gene_0570_tx_2 64 - 306169 306682 . 1 514 0 -chrII 306169 306986 HC_gene_0570_tx_3 330 - 306169 306986 . 1 818 0 -chrII 306271 307420 MC_gene_0242_tx_1 1 + 306271 307420 . 1 1150 0 -chrII 307257 308082 HC_gene_0571_tx_1 1 - 307257 308082 . 1 826 0 -chrII 307596 308851 HC_gene_0243_tx_1 126 + 307596 308851 . 1 1256 0 -chrII 307596 309021 HC_gene_0243_tx_2 6 + 307596 309021 . 1 1426 0 -chrII 307716 308851 HC_gene_0243_tx_3 15 + 307716 308851 . 1 1136 0 -chrII 307716 309021 HC_gene_0243_tx_4 1 + 307716 309021 . 1 1306 0 -chrII 307894 308851 HC_gene_0243_tx_5 22 + 307894 308851 . 1 958 0 -chrII 307894 308851 HC_gene_0243_tx_6 1 + 307894 308851 . 2 65,801 0,157 -chrII 307969 308851 HC_gene_0243_tx_7 4 + 307969 308851 . 1 883 0 -chrII 308040 308851 HC_gene_0243_tx_8 14 + 308040 308851 . 1 812 0 -chrII 308040 309021 HC_gene_0243_tx_9 1 + 308040 309021 . 1 982 0 -chrII 308216 308851 HC_gene_0243_tx_10 22 + 308216 308851 . 1 636 0 -chrII 308884 309554 HC_gene_0572_tx_1 6 - 308884 309554 . 1 671 0 -chrII 308884 309665 HC_gene_0572_tx_2 16 - 308884 309665 . 1 782 0 -chrII 308884 310221 HC_gene_0572_tx_3 5 - 308884 310221 . 1 1338 0 -chrII 308884 310362 HC_gene_0572_tx_4 113 - 308884 310362 . 1 1479 0 -chrII 308884 310362 HC_gene_0572_tx_5 1 - 308884 310362 . 2 510,323 0,1156 -chrII 308884 310362 HC_gene_0572_tx_6 1 - 308884 310362 . 2 966,449 0,1030 -chrII 308884 310362 HC_gene_0572_tx_7 1 - 308884 310362 . 2 534,170 0,1309 -chrII 310493 311198 HC_gene_0573_tx_1 8 - 310493 311198 . 1 706 0 -chrII 310493 311487 HC_gene_0573_tx_2 33 - 310493 311487 . 1 995 0 -chrII 311846 314976 HC_gene_0244_tx_1 13 + 311846 314976 . 1 3131 0 -chrII 312239 314976 HC_gene_0244_tx_2 3 + 312239 314976 . 1 2738 0 -chrII 313926 314976 HC_gene_0244_tx_3 2 + 313926 314976 . 1 1051 0 -chrII 314010 314976 HC_gene_0244_tx_4 8 + 314010 314976 . 1 967 0 -chrII 314291 314976 HC_gene_0244_tx_5 6 + 314291 314976 . 1 686 0 -chrII 314353 314878 LC_gene_0574_tx_1 1 - 314353 314878 . 1 526 0 -chrII 315497 316516 MC_gene_0575_tx_1 1 - 315497 316516 . 1 1020 0 -chrII 315538 316692 HC_gene_0245_tx_1 290 + 315538 316692 . 1 1155 0 -chrII 315638 316692 HC_gene_0245_tx_2 6 + 315638 316692 . 1 1055 0 -chrII 315918 316692 HC_gene_0245_tx_3 60 + 315918 316692 . 1 775 0 -chrII 316142 316692 HC_gene_0245_tx_4 38 + 316142 316692 . 1 551 0 -chrII 316536 317056 MC_gene_0576_tx_1 1 - 316536 317056 . 1 521 0 -chrII 316816 318065 LC_gene_0246_tx_1 1 + 316816 318065 . 1 1250 0 -chrII 318212 320414 HC_gene_0247_tx_1 21 + 318212 320414 . 1 2203 0 -chrII 318212 320414 HC_gene_0247_tx_2 1 + 318212 320414 . 2 1165,984 0,1219 -chrII 318421 320414 HC_gene_0247_tx_3 3 + 318421 320414 . 1 1994 0 -chrII 318748 320414 HC_gene_0247_tx_4 7 + 318748 320414 . 1 1667 0 -chrII 319764 320414 HC_gene_0247_tx_5 4 + 319764 320414 . 1 651 0 -chrII 320345 321216 HC_gene_0577_tx_1 6 - 320345 321216 . 1 872 0 -chrII 320345 321637 HC_gene_0577_tx_2 1 - 320345 321637 . 2 652,538 0,755 -chrII 320345 321637 HC_gene_0577_tx_3 44 - 320345 321637 . 1 1293 0 -chrII 321767 322981 HC_gene_0578_tx_1 2 - 321767 322981 . 1 1215 0 -chrII 321767 324095 HC_gene_0578_tx_2 17 - 321767 324095 . 1 2329 0 -chrII 322196 322965 LC_gene_0248_tx_1 1 + 322196 322965 . 1 770 0 -chrII 324267 326055 HC_gene_0579_tx_1 15 - 324267 326055 . 1 1789 0 -chrII 324767 325611 LC_gene_0249_tx_1 1 + 324767 325611 . 1 845 0 -chrII 325231 326055 HC_gene_0579_tx_2 1 - 325231 326055 . 1 825 0 -chrII 326113 326652 MC_gene_0580_tx_1 1 - 326113 326652 . 1 540 0 -chrII 326316 326806 MC_gene_0250_tx_1 1 + 326316 326806 . 1 491 0 -chrII 327530 328363 LC_gene_0251_tx_1 1 + 327530 328363 . 1 834 0 -chrII 328047 328525 HC_gene_0581_tx_1 1 - 328047 328525 . 1 479 0 -chrII 329679 330338 MC_gene_0252_tx_1 1 + 329679 330338 . 1 660 0 -chrII 329757 330418 MC_gene_0253_tx_1 1 + 329757 330418 . 1 662 0 -chrII 330117 331543 HC_gene_0582_tx_1 4 - 330117 331543 . 1 1427 0 -chrII 330236 331373 HC_gene_0582_tx_2 6 - 330236 331373 . 1 1138 0 -chrII 330236 331543 HC_gene_0582_tx_3 41 - 330236 331543 . 1 1308 0 -chrII 330236 331543 HC_gene_0582_tx_4 1 - 330236 331543 . 2 677,267 0,1041 -chrII 330236 331543 HC_gene_0582_tx_5 1 - 330236 331543 . 2 1070,168 0,1140 -chrII 330396 331543 HC_gene_0582_tx_6 1 - 330396 331543 . 1 1148 0 -chrII 330462 331485 LC_gene_0254_tx_1 1 + 330462 331485 . 1 1024 0 -chrII 330464 331373 HC_gene_0582_tx_7 3 - 330464 331373 . 1 910 0 -chrII 330464 331543 HC_gene_0582_tx_8 4 - 330464 331543 . 1 1080 0 -chrII 331779 332462 HC_gene_0255_tx_1 58 + 331779 332462 . 1 684 0 -chrII 331779 332462 HC_gene_0255_tx_2 1 + 331779 332462 . 2 154,458 0,226 -chrII 331966 332386 LC_gene_0583_tx_1 1 - 331966 332386 . 1 421 0 -chrII 332002 332462 HC_gene_0255_tx_3 18 + 332002 332462 . 1 461 0 -chrII 332673 334056 HC_gene_0256_tx_1 7 + 332673 334056 . 2 203,670 0,714 -chrII 332810 334056 HC_gene_0256_tx_2 1343 + 332810 334056 . 2 66,670 0,577 -chrII 332810 334056 HC_gene_0256_tx_3 2 + 332810 334056 . 2 55,666 0,581 -chrII 332810 334056 HC_gene_0256_tx_4 7 + 332810 334056 . 2 46,672 0,575 -chrII 332810 334056 HC_gene_0256_tx_5 46 + 332810 334056 . 1 1247 0 -chrII 332810 334056 HC_gene_0256_tx_6 6 + 332810 334056 . 2 66,662 0,585 -chrII 332810 334056 HC_gene_0256_tx_7 6 + 332810 334056 . 2 61,661 0,586 -chrII 332810 334056 HC_gene_0256_tx_8 2 + 332810 334056 . 2 63,661 0,586 -chrII 332810 334056 HC_gene_0256_tx_9 4 + 332810 334056 . 2 62,661 0,586 -chrII 332810 334056 HC_gene_0256_tx_10 3 + 332810 334056 . 2 66,653 0,594 -chrII 332810 334056 HC_gene_0256_tx_11 5 + 332810 334056 . 2 55,661 0,586 -chrII 332810 334056 HC_gene_0256_tx_12 8 + 332810 334056 . 2 55,672 0,575 -chrII 332810 334056 HC_gene_0256_tx_13 5 + 332810 334056 . 2 66,659 0,588 -chrII 332810 334056 HC_gene_0256_tx_14 2 + 332810 334056 . 2 66,637 0,610 -chrII 332810 334056 HC_gene_0256_tx_15 2 + 332810 334056 . 2 66,657 0,590 -chrII 332810 334236 HC_gene_0256_tx_16 3 + 332810 334236 . 2 66,850 0,577 -chrII 332942 334056 HC_gene_0256_tx_17 15 + 332942 334056 . 1 1115 0 -chrII 333456 334056 HC_gene_0256_tx_18 375 + 333456 334056 . 1 601 0 -chrII 333456 334236 HC_gene_0256_tx_20 5 + 333456 334236 . 1 781 0 -chrII 333558 334056 HC_gene_0256_tx_19 342 + 333558 334056 . 1 499 0 -chrII 333558 334236 HC_gene_0256_tx_21 2 + 333558 334236 . 1 679 0 -chrII 334139 336931 HC_gene_0584_tx_1 8 - 334139 336931 . 1 2793 0 -chrII 334139 336931 HC_gene_0584_tx_2 1 - 334139 336931 . 2 1432,906 0,1887 -chrII 334200 335948 LC_gene_0257_tx_1 1 + 334200 335948 . 1 1749 0 -chrII 336462 336973 LC_gene_0258_tx_1 1 + 336462 336973 . 1 512 0 -chrII 337142 338241 MC_gene_0585_tx_1 1 - 337142 338241 . 1 1100 0 -chrII 337197 337999 MC_gene_0259_tx_1 1 + 337197 337999 . 1 803 0 -chrII 338099 338734 LC_gene_0260_tx_1 1 + 338099 338734 . 1 636 0 -chrII 338553 339074 HC_gene_0586_tx_1 3 - 338553 339074 . 1 522 0 -chrII 338553 339414 HC_gene_0586_tx_2 24 - 338553 339414 . 1 862 0 -chrII 338661 338998 HC_gene_0586_tx_4 7 - 338661 338998 . 1 338 0 -chrII 338661 339074 HC_gene_0586_tx_5 12 - 338661 339074 . 1 414 0 -chrII 338661 339199 HC_gene_0586_tx_6 12 - 338661 339199 . 1 539 0 -chrII 338661 339253 HC_gene_0586_tx_7 30 - 338661 339253 . 1 593 0 -chrII 338661 339414 HC_gene_0586_tx_3 199 - 338661 339414 . 1 754 0 -chrII 339331 340776 HC_gene_0587_tx_1 2 - 339331 340776 . 1 1446 0 -chrII 339535 340643 HC_gene_0587_tx_2 4 - 339535 340643 . 1 1109 0 -chrII 339535 340776 HC_gene_0587_tx_3 93 - 339535 340776 . 1 1242 0 -chrII 339728 340243 MC_gene_0261_tx_1 1 + 339728 340243 . 1 516 0 -chrII 340894 341499 MC_gene_0588_tx_1 1 - 340894 341499 . 1 606 0 -chrII 340993 342208 HC_gene_0262_tx_1 1 + 340993 342208 . 1 1216 0 -chrII 342786 344498 HC_gene_0263_tx_1 77 + 342786 344498 . 1 1713 0 -chrII 342786 344604 HC_gene_0263_tx_2 27 + 342786 344604 . 1 1819 0 -chrII 342822 344170 MC_gene_0589_tx_1 1 - 342822 344170 . 1 1349 0 -chrII 342945 344498 HC_gene_0263_tx_3 9 + 342945 344498 . 1 1554 0 -chrII 342945 344604 HC_gene_0263_tx_4 4 + 342945 344604 . 1 1660 0 -chrII 343134 344498 HC_gene_0263_tx_5 12 + 343134 344498 . 1 1365 0 -chrII 343134 344604 HC_gene_0263_tx_6 5 + 343134 344604 . 1 1471 0 -chrII 343205 344498 HC_gene_0263_tx_7 4 + 343205 344498 . 1 1294 0 -chrII 343205 344604 HC_gene_0263_tx_8 3 + 343205 344604 . 1 1400 0 -chrII 343605 344498 HC_gene_0263_tx_9 10 + 343605 344498 . 1 894 0 -chrII 343605 344604 HC_gene_0263_tx_10 3 + 343605 344604 . 1 1000 0 -chrII 343690 344498 HC_gene_0263_tx_11 9 + 343690 344498 . 1 809 0 -chrII 343690 344604 HC_gene_0263_tx_12 2 + 343690 344604 . 1 915 0 -chrII 343785 344498 HC_gene_0263_tx_13 13 + 343785 344498 . 1 714 0 -chrII 343785 344604 HC_gene_0263_tx_14 7 + 343785 344604 . 1 820 0 -chrII 343891 344498 HC_gene_0263_tx_15 11 + 343891 344498 . 1 608 0 -chrII 343891 344604 HC_gene_0263_tx_16 8 + 343891 344604 . 1 714 0 -chrII 344110 344498 HC_gene_0263_tx_17 7 + 344110 344498 . 1 389 0 -chrII 344110 344604 HC_gene_0263_tx_18 10 + 344110 344604 . 1 495 0 -chrII 344294 344604 HC_gene_0263_tx_19 3 + 344294 344604 . 1 311 0 -chrII 344472 347323 MC_gene_0590_tx_1 1 - 344472 347323 . 1 2852 0 -chrII 344505 347116 MC_gene_0590_tx_2 1 - 344505 347116 . 1 2612 0 -chrII 347808 349425 HC_gene_0264_tx_1 60 + 347808 349425 . 1 1618 0 -chrII 348161 349425 HC_gene_0264_tx_2 5 + 348161 349425 . 1 1265 0 -chrII 348428 349425 HC_gene_0264_tx_3 10 + 348428 349425 . 1 998 0 -chrII 348549 349425 HC_gene_0264_tx_4 5 + 348549 349425 . 1 877 0 -chrII 348992 349425 HC_gene_0264_tx_5 6 + 348992 349425 . 1 434 0 -chrII 349044 349425 HC_gene_0264_tx_6 18 + 349044 349425 . 1 382 0 -chrII 349325 349978 MC_gene_0591_tx_1 1 - 349325 349978 . 1 654 0 -chrII 350029 350575 HC_gene_0265_tx_1 5 + 350029 350575 . 1 547 0 -chrII 350181 350575 HC_gene_0265_tx_2 5 + 350181 350575 . 1 395 0 -chrII 351044 351504 HC_gene_0592_tx_1 1 - 351044 351504 . 1 461 0 -chrII 351059 351930 HC_gene_0266_tx_1 7 + 351059 351930 . 1 872 0 -chrII 351059 352014 HC_gene_0266_tx_2 1 + 351059 352014 . 1 956 0 -chrII 351243 351930 HC_gene_0266_tx_3 36 + 351243 351930 . 1 688 0 -chrII 351243 352014 HC_gene_0266_tx_4 1 + 351243 352014 . 1 772 0 -chrII 351450 351930 HC_gene_0266_tx_5 11 + 351450 351930 . 1 481 0 -chrII 351450 352014 HC_gene_0266_tx_6 1 + 351450 352014 . 1 565 0 -chrII 351603 351930 HC_gene_0266_tx_7 27 + 351603 351930 . 1 328 0 -chrII 351603 352014 HC_gene_0266_tx_8 3 + 351603 352014 . 1 412 0 -chrII 351912 352632 HC_gene_0593_tx_1 1 - 351912 352632 . 1 721 0 -chrII 351912 353383 HC_gene_0593_tx_2 10 - 351912 353383 . 1 1472 0 -chrII 352063 353383 HC_gene_0593_tx_3 1 - 352063 353383 . 1 1321 0 -chrII 352064 353383 HC_gene_0593_tx_4 1 - 352064 353383 . 1 1320 0 -chrII 352066 353383 HC_gene_0593_tx_5 1 - 352066 353383 . 1 1318 0 -chrII 352068 352632 HC_gene_0593_tx_11 1 - 352068 352632 . 1 565 0 -chrII 352069 353383 HC_gene_0593_tx_6 1 - 352069 353383 . 1 1315 0 -chrII 352073 352632 HC_gene_0593_tx_12 1 - 352073 352632 . 1 560 0 -chrII 352073 353383 HC_gene_0593_tx_7 2 - 352073 353383 . 1 1311 0 -chrII 352077 353383 HC_gene_0593_tx_8 1 - 352077 353383 . 1 1307 0 -chrII 352080 353383 HC_gene_0593_tx_9 1 - 352080 353383 . 1 1304 0 -chrII 352081 353383 HC_gene_0593_tx_10 1 - 352081 353383 . 1 1303 0 -chrII 353379 353712 MC_gene_0267_tx_1 1 + 353379 353712 . 2 220,60 0,274 -chrII 353515 356040 HC_gene_0594_tx_1 7 - 353515 356040 . 1 2526 0 -chrII 353515 356040 HC_gene_0594_tx_2 1 - 353515 356040 . 2 1123,1355 0,1171 -chrII 353515 356040 HC_gene_0594_tx_3 1 - 353515 356040 . 2 90,2386 0,140 -chrII 353649 356040 HC_gene_0594_tx_4 2 - 353649 356040 . 1 2392 0 -chrII 356148 356461 HC_gene_0595_tx_1 29 - 356148 356461 . 1 314 0 -chrII 356148 356626 HC_gene_0595_tx_2 340 - 356148 356626 . 1 479 0 -chrII 356246 356878 MC_gene_0268_tx_1 1 + 356246 356878 . 1 633 0 -chrII 356752 359192 HC_gene_0596_tx_1 1 - 356752 359192 . 1 2441 0 -chrII 356754 358643 HC_gene_0596_tx_3 1 - 356754 358643 . 1 1890 0 -chrII 356754 360321 HC_gene_0596_tx_5 2 - 356754 360321 . 1 3568 0 -chrII 356759 357706 HC_gene_0596_tx_8 2 - 356759 357706 . 1 948 0 -chrII 356760 360186 HC_gene_0596_tx_6 1 - 356760 360186 . 1 3427 0 -chrII 356770 357706 HC_gene_0596_tx_9 1 - 356770 357706 . 1 937 0 -chrII 356771 357706 HC_gene_0596_tx_10 1 - 356771 357706 . 1 936 0 -chrII 356777 359285 HC_gene_0596_tx_2 1 - 356777 359285 . 1 2509 0 -chrII 356779 357706 HC_gene_0596_tx_11 1 - 356779 357706 . 1 928 0 -chrII 356779 358643 HC_gene_0596_tx_4 1 - 356779 358643 . 1 1865 0 -chrII 356779 360321 HC_gene_0596_tx_7 1 - 356779 360321 . 1 3543 0 -chrII 356783 358253 HC_gene_0596_tx_12 1 - 356783 358253 . 1 1471 0 -chrII 356789 358253 HC_gene_0596_tx_13 1 - 356789 358253 . 1 1465 0 -chrII 360291 360689 MC_gene_0269_tx_1 1 + 360291 360689 . 1 399 0 -chrII 360539 362602 HC_gene_0597_tx_1 17 - 360539 362602 . 1 2064 0 -chrII 360539 362602 HC_gene_0597_tx_2 1 - 360539 362602 . 2 897,1002 0,1062 -chrII 360539 362602 HC_gene_0597_tx_3 1 - 360539 362602 . 2 977,998 0,1066 -chrII 360539 362602 HC_gene_0597_tx_4 1 - 360539 362602 . 2 914,996 0,1068 -chrII 360539 362602 HC_gene_0597_tx_5 1 - 360539 362602 . 2 878,1114 0,950 -chrII 362863 363179 HC_gene_0270_tx_1 1 + 362863 363179 . 1 317 0 -chrII 362863 363180 HC_gene_0270_tx_2 1 + 362863 363180 . 1 318 0 -chrII 362863 364678 HC_gene_0270_tx_3 17 + 362863 364678 . 1 1816 0 -chrII 362863 364678 HC_gene_0270_tx_4 1 + 362863 364678 . 2 412,968 0,848 -chrII 364629 365727 HC_gene_0598_tx_1 1 - 364629 365727 . 2 539,341 0,758 -chrII 364629 365727 HC_gene_0598_tx_2 47 - 364629 365727 . 1 1099 0 -chrII 364721 365727 HC_gene_0598_tx_3 17 - 364721 365727 . 1 1007 0 -chrII 364844 365667 LC_gene_0271_tx_1 1 + 364844 365667 . 1 824 0 -chrII 365870 366511 HC_gene_0599_tx_1 6 - 365870 366511 . 1 642 0 -chrII 365870 366611 HC_gene_0599_tx_2 43 - 365870 366611 . 1 742 0 -chrII 365870 366611 HC_gene_0599_tx_3 1 - 365870 366611 . 2 638,27 0,715 -chrII 365920 366205 HC_gene_0272_tx_1 4 + 365920 366205 . 1 286 0 -chrII 366525 369733 HC_gene_0600_tx_1 1 - 366525 369733 . 1 3209 0 -chrII 366773 366936 MC_gene_0273_tx_1 1 + 366773 366936 . 1 164 0 -chrII 366917 369733 HC_gene_0600_tx_2 1 - 366917 369733 . 1 2817 0 -chrII 366922 369733 HC_gene_0600_tx_3 1 - 366922 369733 . 1 2812 0 -chrII 369950 370352 HC_gene_0601_tx_1 35 - 369950 370352 . 1 403 0 -chrII 369950 370756 HC_gene_0601_tx_2 11 - 369950 370756 . 1 807 0 -chrII 370547 370867 HC_gene_0274_tx_1 21 + 370547 370867 . 1 321 0 -chrII 370763 370974 HC_gene_0602_tx_1 1 - 370763 370974 . 1 212 0 -chrII 370763 371147 HC_gene_0602_tx_2 1 - 370763 371147 . 1 385 0 -chrII 371462 372820 HC_gene_0275_tx_1 2 + 371462 372820 . 1 1359 0 -chrII 371951 372820 HC_gene_0275_tx_2 1 + 371951 372820 . 1 870 0 -chrII 371951 373738 HC_gene_0275_tx_3 1 + 371951 373738 . 1 1788 0 -chrII 371964 372384 HC_gene_0603_tx_1 25 - 371964 372384 . 1 421 0 -chrII 371964 372519 HC_gene_0603_tx_2 15 - 371964 372519 . 1 556 0 -chrII 371964 372602 HC_gene_0603_tx_3 73 - 371964 372602 . 1 639 0 -chrII 371964 372602 HC_gene_0603_tx_4 1 - 371964 372602 . 2 403,151 0,488 -chrII 371964 372756 HC_gene_0603_tx_5 1 - 371964 372756 . 2 383,374 0,419 -chrII 371964 372760 HC_gene_0603_tx_6 1 - 371964 372760 . 2 276,395 0,402 -chrII 371964 372763 HC_gene_0603_tx_7 1 - 371964 372763 . 2 383,381 0,419 -chrII 371964 372787 HC_gene_0603_tx_8 210 - 371964 372787 . 1 824 0 -chrII 371964 372787 HC_gene_0603_tx_9 1 - 371964 372787 . 2 672,107 0,717 -chrII 373639 374089 HC_gene_0604_tx_1 41 - 373639 374089 . 1 451 0 -chrII 373639 374415 HC_gene_0604_tx_2 25 - 373639 374415 . 1 777 0 -chrII 373639 374616 HC_gene_0604_tx_3 29 - 373639 374616 . 1 978 0 -chrII 373639 374784 HC_gene_0604_tx_4 18 - 373639 374784 . 1 1146 0 -chrII 373639 374784 HC_gene_0604_tx_5 1 - 373639 374784 . 2 490,423 0,723 -chrII 373639 374886 HC_gene_0604_tx_6 22 - 373639 374886 . 1 1248 0 -chrII 373639 374886 HC_gene_0604_tx_7 1 - 373639 374886 . 2 1090,82 0,1166 -chrII 373639 375447 HC_gene_0604_tx_8 6 - 373639 375447 . 1 1809 0 -chrII 373639 375505 HC_gene_0604_tx_9 15 - 373639 375505 . 1 1867 0 -chrII 373639 375632 HC_gene_0604_tx_10 4 - 373639 375632 . 1 1994 0 -chrII 373639 375753 HC_gene_0604_tx_11 123 - 373639 375753 . 1 2115 0 -chrII 373639 375753 HC_gene_0604_tx_12 1 - 373639 375753 . 2 1310,594 0,1521 -chrII 373639 375753 HC_gene_0604_tx_13 1 - 373639 375753 . 3 1580,190,184 0,1668,1931 -chrII 373639 375753 HC_gene_0604_tx_14 1 - 373639 375753 . 2 1855,184 0,1931 -chrII 373639 375753 HC_gene_0604_tx_15 1 - 373639 375753 . 2 1226,784 0,1331 -chrII 373639 375753 HC_gene_0604_tx_16 1 - 373639 375753 . 2 965,1078 0,1037 -chrII 373639 375753 HC_gene_0604_tx_17 1 - 373639 375753 . 2 835,1012 0,1103 -chrII 374017 375874 LC_gene_0276_tx_1 1 + 374017 375874 . 1 1858 0 -chrII 374049 374415 HC_gene_0604_tx_18 1 - 374049 374415 . 1 367 0 -chrII 374809 375753 HC_gene_0604_tx_19 2 - 374809 375753 . 1 945 0 -chrII 374937 375753 HC_gene_0604_tx_20 1 - 374937 375753 . 1 817 0 -chrII 374938 375632 HC_gene_0604_tx_21 1 - 374938 375632 . 1 695 0 -chrII 374938 375753 HC_gene_0604_tx_22 1 - 374938 375753 . 1 816 0 -chrII 374940 375753 HC_gene_0604_tx_23 1 - 374940 375753 . 1 814 0 -chrII 374946 375505 HC_gene_0604_tx_24 1 - 374946 375505 . 1 560 0 -chrII 374946 375632 HC_gene_0604_tx_25 1 - 374946 375632 . 1 687 0 -chrII 374946 375753 HC_gene_0604_tx_26 1 - 374946 375753 . 1 808 0 -chrII 374947 375753 HC_gene_0604_tx_27 1 - 374947 375753 . 1 807 0 -chrII 374952 375632 HC_gene_0604_tx_28 1 - 374952 375632 . 1 681 0 -chrII 374953 375753 HC_gene_0604_tx_29 2 - 374953 375753 . 1 801 0 -chrII 374958 375447 HC_gene_0604_tx_30 1 - 374958 375447 . 1 490 0 -chrII 374965 375753 HC_gene_0604_tx_31 1 - 374965 375753 . 1 789 0 -chrII 374970 375753 HC_gene_0604_tx_32 1 - 374970 375753 . 1 784 0 -chrII 374982 375753 HC_gene_0604_tx_33 1 - 374982 375753 . 1 772 0 -chrII 374984 375753 HC_gene_0604_tx_34 1 - 374984 375753 . 1 770 0 -chrII 374986 375753 HC_gene_0604_tx_35 1 - 374986 375753 . 1 768 0 -chrII 375004 375753 HC_gene_0604_tx_36 1 - 375004 375753 . 1 750 0 -chrII 375018 375753 HC_gene_0604_tx_37 1 - 375018 375753 . 1 736 0 -chrII 375021 375753 HC_gene_0604_tx_38 1 - 375021 375753 . 1 733 0 -chrII 375712 378539 HC_gene_0605_tx_1 1 - 375712 378539 . 1 2828 0 -chrII 375734 375906 HC_gene_0605_tx_11 1 - 375734 375906 . 1 173 0 -chrII 375771 378539 HC_gene_0605_tx_2 1 - 375771 378539 . 1 2769 0 -chrII 376248 378539 HC_gene_0605_tx_3 1 - 376248 378539 . 1 2292 0 -chrII 376427 378539 HC_gene_0605_tx_4 64 - 376427 378539 . 1 2113 0 -chrII 376427 378539 HC_gene_0605_tx_5 1 - 376427 378539 . 2 1481,497 0,1616 -chrII 376427 378539 HC_gene_0605_tx_6 1 - 376427 378539 . 2 1327,527 0,1586 -chrII 376427 378539 HC_gene_0605_tx_7 1 - 376427 378539 . 2 976,909 0,1204 -chrII 376427 378539 HC_gene_0605_tx_8 1 - 376427 378539 . 2 882,1166 0,947 -chrII 376427 378539 HC_gene_0605_tx_9 1 - 376427 378539 . 2 882,1179 0,934 -chrII 376427 378539 HC_gene_0605_tx_10 1 - 376427 378539 . 3 843,610,434 0,917,1679 -chrII 376525 378549 HC_gene_0277_tx_1 1 + 376525 378549 . 1 2025 0 -chrII 376525 378661 HC_gene_0277_tx_2 4 + 376525 378661 . 1 2137 0 -chrII 377739 378539 HC_gene_0605_tx_12 1 - 377739 378539 . 1 801 0 -chrII 377743 378539 HC_gene_0605_tx_13 1 - 377743 378539 . 1 797 0 -chrII 378386 378539 HC_gene_0605_tx_14 1 - 378386 378539 . 1 154 0 -chrII 379176 379956 HC_gene_0606_tx_1 48 - 379176 379956 . 1 781 0 -chrII 379176 379956 HC_gene_0606_tx_2 1 - 379176 379956 . 2 417,162 0,619 -chrII 379176 380956 HC_gene_0606_tx_4 1 - 379176 380956 . 1 1781 0 -chrII 379176 381230 HC_gene_0606_tx_5 1 - 379176 381230 . 1 2055 0 -chrII 379293 379956 HC_gene_0606_tx_3 2 - 379293 379956 . 1 664 0 -chrII 380239 381316 HC_gene_0278_tx_1 2 + 380239 381316 . 1 1078 0 -chrII 380339 381316 HC_gene_0278_tx_2 53 + 380339 381316 . 1 978 0 -chrII 380561 381316 HC_gene_0278_tx_3 5 + 380561 381316 . 1 756 0 -chrII 381688 382841 HC_gene_0279_tx_1 3 + 381688 382841 . 1 1154 0 -chrII 381847 382841 HC_gene_0279_tx_2 4 + 381847 382841 . 1 995 0 -chrII 381955 382841 HC_gene_0279_tx_3 63 + 381955 382841 . 1 887 0 -chrII 382106 382841 HC_gene_0279_tx_4 14 + 382106 382841 . 1 736 0 -chrII 382384 382962 MC_gene_0607_tx_1 1 - 382384 382962 . 1 579 0 -chrII 382471 382841 HC_gene_0279_tx_5 9 + 382471 382841 . 1 371 0 -chrII 383139 386052 HC_gene_0280_tx_1 9 + 383139 386052 . 1 2914 0 -chrII 383369 386052 HC_gene_0280_tx_2 2 + 383369 386052 . 1 2684 0 -chrII 383558 386052 HC_gene_0280_tx_3 3 + 383558 386052 . 1 2495 0 -chrII 383760 386052 HC_gene_0280_tx_4 3 + 383760 386052 . 1 2293 0 -chrII 385624 386049 LC_gene_0608_tx_1 1 - 385624 386049 . 1 426 0 -chrII 386280 389281 HC_gene_0281_tx_1 12 + 386280 389281 . 1 3002 0 -chrII 386280 389334 HC_gene_0281_tx_2 2 + 386280 389334 . 1 3055 0 -chrII 386280 389334 HC_gene_0281_tx_3 1 + 386280 389334 . 2 180,2825 0,230 -chrII 386472 389281 HC_gene_0281_tx_4 1 + 386472 389281 . 1 2810 0 -chrII 386734 389281 HC_gene_0281_tx_5 2 + 386734 389281 . 1 2548 0 -chrII 386734 389334 HC_gene_0281_tx_6 1 + 386734 389334 . 1 2601 0 -chrII 386979 389281 HC_gene_0281_tx_7 2 + 386979 389281 . 1 2303 0 -chrII 388524 389281 HC_gene_0281_tx_8 5 + 388524 389281 . 1 758 0 -chrII 388524 389334 HC_gene_0281_tx_9 2 + 388524 389334 . 1 811 0 -chrII 388770 389281 HC_gene_0281_tx_10 8 + 388770 389281 . 1 512 0 -chrII 388770 389334 HC_gene_0281_tx_11 2 + 388770 389334 . 1 565 0 -chrII 390116 391021 LC_gene_0609_tx_1 1 - 390116 391021 . 1 906 0 -chrII 390157 391702 LC_gene_0282_tx_1 1 + 390157 391702 . 1 1546 0 -chrII 391164 391542 HC_gene_0610_tx_1 31 - 391164 391542 . 1 379 0 -chrII 391164 391671 HC_gene_0610_tx_2 29 - 391164 391671 . 1 508 0 -chrII 391164 391892 HC_gene_0610_tx_3 4 - 391164 391892 . 1 729 0 -chrII 391164 392164 HC_gene_0610_tx_4 3 - 391164 392164 . 1 1001 0 -chrII 391164 392352 HC_gene_0610_tx_5 20 - 391164 392352 . 1 1189 0 -chrII 391164 392718 HC_gene_0610_tx_8 1 - 391164 392718 . 1 1555 0 -chrII 391370 391542 HC_gene_0610_tx_9 1 - 391370 391542 . 1 173 0 -chrII 391370 392352 HC_gene_0610_tx_6 2 - 391370 392352 . 1 983 0 -chrII 391370 392352 HC_gene_0610_tx_7 1 - 391370 392352 . 2 52,340 0,643 -chrII 391588 391892 HC_gene_0610_tx_10 1 - 391588 391892 . 2 71,178 0,127 -chrII 391588 391892 HC_gene_0610_tx_11 1 - 391588 391892 . 1 305 0 -chrII 391588 392164 HC_gene_0610_tx_12 7 - 391588 392164 . 1 577 0 -chrII 391588 392305 HC_gene_0610_tx_13 1 - 391588 392305 . 1 718 0 -chrII 391588 392325 HC_gene_0610_tx_14 1 - 391588 392325 . 1 738 0 -chrII 391588 392340 HC_gene_0610_tx_15 1 - 391588 392340 . 1 753 0 -chrII 391588 392352 HC_gene_0610_tx_16 70 - 391588 392352 . 1 765 0 -chrII 391588 392718 HC_gene_0610_tx_23 1 - 391588 392718 . 1 1131 0 -chrII 391691 392293 HC_gene_0610_tx_17 1 - 391691 392293 . 1 603 0 -chrII 391691 392316 HC_gene_0610_tx_18 1 - 391691 392316 . 1 626 0 -chrII 391691 392323 HC_gene_0610_tx_19 1 - 391691 392323 . 1 633 0 -chrII 391691 392325 HC_gene_0610_tx_20 1 - 391691 392325 . 1 635 0 -chrII 391691 392336 HC_gene_0610_tx_21 1 - 391691 392336 . 1 646 0 -chrII 391691 392352 HC_gene_0610_tx_22 8 - 391691 392352 . 1 662 0 -chrII 391834 392352 HC_gene_0610_tx_24 5 - 391834 392352 . 1 519 0 -chrII 391919 392415 MC_gene_0283_tx_1 1 + 391919 392415 . 1 497 0 -chrII 392002 392415 MC_gene_0283_tx_2 1 + 392002 392415 . 1 414 0 -chrII 392930 395249 HC_gene_0284_tx_1 1 + 392930 395249 . 2 255,1739 0,581 -chrII 392934 395249 HC_gene_0284_tx_2 1 + 392934 395249 . 2 263,1726 0,590 -chrII 392940 395249 HC_gene_0284_tx_3 1 + 392940 395249 . 2 245,1739 0,571 -chrII 392950 395249 HC_gene_0284_tx_4 1 + 392950 395249 . 2 235,1739 0,561 -chrII 392959 395249 HC_gene_0284_tx_5 2 + 392959 395249 . 2 226,1739 0,552 -chrII 392959 395249 HC_gene_0284_tx_6 1 + 392959 395249 . 2 235,1726 0,565 -chrII 392959 395380 HC_gene_0284_tx_7 1 + 392959 395380 . 2 226,1870 0,552 -chrII 392960 394850 HC_gene_0284_tx_8 1 + 392960 394850 . 2 225,1340 0,551 -chrII 392960 395249 HC_gene_0284_tx_9 1 + 392960 395249 . 2 237,1726 0,564 -chrII 392960 395249 HC_gene_0284_tx_10 1 + 392960 395249 . 2 225,1588 0,702 -chrII 392960 395249 HC_gene_0284_tx_11 3 + 392960 395249 . 2 225,1739 0,551 -chrII 392961 394795 HC_gene_0284_tx_12 3 + 392961 394795 . 2 220,1285 0,550 -chrII 392961 394796 HC_gene_0284_tx_13 1 + 392961 394796 . 2 220,1286 0,550 -chrII 392961 394797 HC_gene_0284_tx_14 2 + 392961 394797 . 2 220,1287 0,550 -chrII 392961 394798 HC_gene_0284_tx_15 7 + 392961 394798 . 2 220,1288 0,550 -chrII 392961 394799 HC_gene_0284_tx_16 1 + 392961 394799 . 2 202,1292 0,547 -chrII 392961 394800 HC_gene_0284_tx_17 1 + 392961 394800 . 2 220,1290 0,550 -chrII 392961 394806 HC_gene_0284_tx_18 1 + 392961 394806 . 1 1846 0 -chrII 392961 394806 HC_gene_0284_tx_19 2 + 392961 394806 . 2 220,1296 0,550 -chrII 392961 394807 HC_gene_0284_tx_20 1 + 392961 394807 . 3 220,250,994 0,550,853 -chrII 392961 394807 HC_gene_0284_tx_21 1 + 392961 394807 . 1 1847 0 -chrII 392961 394809 HC_gene_0284_tx_22 1 + 392961 394809 . 1 1849 0 -chrII 392961 394810 HC_gene_0284_tx_23 1 + 392961 394810 . 2 220,1300 0,550 -chrII 392961 394811 HC_gene_0284_tx_24 1 + 392961 394811 . 2 220,1301 0,550 -chrII 392961 394813 HC_gene_0284_tx_25 2 + 392961 394813 . 2 220,1303 0,550 -chrII 392961 394814 HC_gene_0284_tx_26 1 + 392961 394814 . 2 220,1304 0,550 -chrII 392961 394814 HC_gene_0284_tx_27 1 + 392961 394814 . 2 213,1299 0,555 -chrII 392961 394822 HC_gene_0284_tx_28 2 + 392961 394822 . 2 220,1312 0,550 -chrII 392961 394824 HC_gene_0284_tx_29 1 + 392961 394824 . 2 220,1314 0,550 -chrII 392961 394825 HC_gene_0284_tx_30 1 + 392961 394825 . 1 1865 0 -chrII 392961 394825 HC_gene_0284_tx_31 2 + 392961 394825 . 2 220,1315 0,550 -chrII 392961 394829 HC_gene_0284_tx_32 1 + 392961 394829 . 2 220,1319 0,550 -chrII 392961 394833 HC_gene_0284_tx_33 2 + 392961 394833 . 2 220,1323 0,550 -chrII 392961 394835 HC_gene_0284_tx_34 1 + 392961 394835 . 2 155,957 0,918 -chrII 392961 394837 HC_gene_0284_tx_35 4 + 392961 394837 . 2 220,1327 0,550 -chrII 392961 394838 HC_gene_0284_tx_36 1 + 392961 394838 . 2 220,1328 0,550 -chrII 392961 394839 HC_gene_0284_tx_37 2 + 392961 394839 . 2 220,1329 0,550 -chrII 392961 394844 HC_gene_0284_tx_38 1 + 392961 394844 . 2 220,1334 0,550 -chrII 392961 394845 HC_gene_0284_tx_39 2 + 392961 394845 . 2 220,1335 0,550 -chrII 392961 394846 HC_gene_0284_tx_40 1 + 392961 394846 . 1 1886 0 -chrII 392961 394846 HC_gene_0284_tx_41 1 + 392961 394846 . 2 220,1336 0,550 -chrII 392961 394846 HC_gene_0284_tx_42 1 + 392961 394846 . 2 217,1354 0,532 -chrII 392961 394847 HC_gene_0284_tx_43 3 + 392961 394847 . 2 220,1337 0,550 -chrII 392961 394847 HC_gene_0284_tx_44 1 + 392961 394847 . 2 184,1355 0,532 -chrII 392961 394847 HC_gene_0284_tx_45 1 + 392961 394847 . 2 190,1355 0,532 -chrII 392961 394849 HC_gene_0284_tx_46 3 + 392961 394849 . 2 220,1339 0,550 -chrII 392961 394850 HC_gene_0284_tx_47 2 + 392961 394850 . 2 220,1340 0,550 -chrII 392961 394850 HC_gene_0284_tx_48 1 + 392961 394850 . 2 193,1358 0,532 -chrII 392961 394851 HC_gene_0284_tx_49 3 + 392961 394851 . 2 220,1341 0,550 -chrII 392961 394852 HC_gene_0284_tx_50 1 + 392961 394852 . 2 220,1342 0,550 -chrII 392961 394853 HC_gene_0284_tx_51 8 + 392961 394853 . 2 220,1343 0,550 -chrII 392961 394853 HC_gene_0284_tx_52 2 + 392961 394853 . 1 1893 0 -chrII 392961 394856 HC_gene_0284_tx_53 1 + 392961 394856 . 2 220,1346 0,550 -chrII 392961 394857 HC_gene_0284_tx_54 2 + 392961 394857 . 2 220,1347 0,550 -chrII 392961 394861 HC_gene_0284_tx_55 1 + 392961 394861 . 2 220,1351 0,550 -chrII 392961 394863 HC_gene_0284_tx_56 3 + 392961 394863 . 2 220,1353 0,550 -chrII 392961 394864 HC_gene_0284_tx_57 3 + 392961 394864 . 2 220,1354 0,550 -chrII 392961 394864 HC_gene_0284_tx_58 1 + 392961 394864 . 2 248,1341 0,563 -chrII 392961 394867 HC_gene_0284_tx_59 1 + 392961 394867 . 2 220,1357 0,550 -chrII 392961 394870 HC_gene_0284_tx_60 3 + 392961 394870 . 2 220,1360 0,550 -chrII 392961 394870 HC_gene_0284_tx_61 1 + 392961 394870 . 2 213,1381 0,529 -chrII 392961 394870 HC_gene_0284_tx_62 1 + 392961 394870 . 2 202,1360 0,550 -chrII 392961 394871 HC_gene_0284_tx_63 9 + 392961 394871 . 2 220,1361 0,550 -chrII 392961 394871 HC_gene_0284_tx_64 1 + 392961 394871 . 2 217,1348 0,563 -chrII 392961 394871 HC_gene_0284_tx_65 1 + 392961 394871 . 2 198,1379 0,532 -chrII 392961 394872 HC_gene_0284_tx_66 1 + 392961 394872 . 2 220,1362 0,550 -chrII 392961 394873 HC_gene_0284_tx_67 3 + 392961 394873 . 2 220,1363 0,550 -chrII 392961 394874 HC_gene_0284_tx_68 1 + 392961 394874 . 2 220,1364 0,550 -chrII 392961 394875 HC_gene_0284_tx_69 6 + 392961 394875 . 2 220,1365 0,550 -chrII 392961 394875 HC_gene_0284_tx_70 1 + 392961 394875 . 2 217,1352 0,563 -chrII 392961 394876 HC_gene_0284_tx_71 3 + 392961 394876 . 2 220,1366 0,550 -chrII 392961 394876 HC_gene_0284_tx_72 1 + 392961 394876 . 1 1916 0 -chrII 392961 394877 HC_gene_0284_tx_73 8 + 392961 394877 . 2 220,1367 0,550 -chrII 392961 394877 HC_gene_0284_tx_74 1 + 392961 394877 . 2 202,1367 0,550 -chrII 392961 394877 HC_gene_0284_tx_75 1 + 392961 394877 . 2 273,1394 0,523 -chrII 392961 394878 HC_gene_0284_tx_76 7 + 392961 394878 . 2 220,1368 0,550 -chrII 392961 394879 HC_gene_0284_tx_77 3 + 392961 394879 . 2 220,1369 0,550 -chrII 392961 394880 HC_gene_0284_tx_78 3 + 392961 394880 . 2 220,1370 0,550 -chrII 392961 394881 HC_gene_0284_tx_79 14 + 392961 394881 . 2 220,1371 0,550 -chrII 392961 394881 HC_gene_0284_tx_80 1 + 392961 394881 . 2 213,1398 0,523 -chrII 392961 394881 HC_gene_0284_tx_81 1 + 392961 394881 . 2 213,1366 0,555 -chrII 392961 394882 HC_gene_0284_tx_82 22 + 392961 394882 . 2 220,1372 0,550 -chrII 392961 394882 HC_gene_0284_tx_83 1 + 392961 394882 . 2 213,1381 0,541 -chrII 392961 394882 HC_gene_0284_tx_84 1 + 392961 394882 . 2 193,1393 0,529 -chrII 392961 394882 HC_gene_0284_tx_85 1 + 392961 394882 . 2 190,1393 0,529 -chrII 392961 394882 HC_gene_0284_tx_86 1 + 392961 394882 . 1 1922 0 -chrII 392961 394882 HC_gene_0284_tx_87 1 + 392961 394882 . 2 217,1359 0,563 -chrII 392961 394883 HC_gene_0284_tx_88 7 + 392961 394883 . 2 220,1373 0,550 -chrII 392961 394883 HC_gene_0284_tx_89 1 + 392961 394883 . 2 213,1391 0,532 -chrII 392961 394883 HC_gene_0284_tx_90 1 + 392961 394883 . 2 94,1279 0,644 -chrII 392961 394884 HC_gene_0284_tx_91 15 + 392961 394884 . 2 220,1374 0,550 -chrII 392961 394884 HC_gene_0284_tx_92 1 + 392961 394884 . 2 224,1374 0,550 -chrII 392961 394884 HC_gene_0284_tx_93 1 + 392961 394884 . 1 1924 0 -chrII 392961 394884 HC_gene_0284_tx_94 1 + 392961 394884 . 2 184,1395 0,529 -chrII 392961 394884 HC_gene_0284_tx_95 1 + 392961 394884 . 2 198,1395 0,529 -chrII 392961 394885 HC_gene_0284_tx_96 8 + 392961 394885 . 2 220,1375 0,550 -chrII 392961 394885 HC_gene_0284_tx_97 1 + 392961 394885 . 2 149,1393 0,532 -chrII 392961 394885 HC_gene_0284_tx_98 1 + 392961 394885 . 2 190,1393 0,532 -chrII 392961 394885 HC_gene_0284_tx_99 1 + 392961 394885 . 1 1925 0 -chrII 392961 394886 HC_gene_0284_tx_100 16 + 392961 394886 . 2 220,1376 0,550 -chrII 392961 394888 HC_gene_0284_tx_101 1 + 392961 394888 . 2 213,1396 0,532 -chrII 392961 394888 HC_gene_0284_tx_102 3 + 392961 394888 . 2 220,1378 0,550 -chrII 392961 394889 HC_gene_0284_tx_103 1 + 392961 394889 . 2 220,1379 0,550 -chrII 392961 394890 HC_gene_0284_tx_104 7 + 392961 394890 . 2 220,1380 0,550 -chrII 392961 394890 HC_gene_0284_tx_105 1 + 392961 394890 . 2 273,1367 0,563 -chrII 392961 394891 HC_gene_0284_tx_106 27 + 392961 394891 . 2 220,1381 0,550 -chrII 392961 394891 HC_gene_0284_tx_107 1 + 392961 394891 . 2 198,1368 0,563 -chrII 392961 394891 HC_gene_0284_tx_108 1 + 392961 394891 . 2 184,1408 0,523 -chrII 392961 394891 HC_gene_0284_tx_109 1 + 392961 394891 . 2 217,1376 0,555 -chrII 392961 394891 HC_gene_0284_tx_110 1 + 392961 394891 . 2 190,846 0,1085 -chrII 392961 394891 HC_gene_0284_tx_111 1 + 392961 394891 . 2 248,1368 0,563 -chrII 392961 394891 HC_gene_0284_tx_112 1 + 392961 394891 . 3 220,123,1188 0,550,743 -chrII 392961 394891 HC_gene_0284_tx_113 1 + 392961 394891 . 2 217,1368 0,563 -chrII 392961 394892 HC_gene_0284_tx_114 2 + 392961 394892 . 2 220,1382 0,550 -chrII 392961 394892 HC_gene_0284_tx_115 1 + 392961 394892 . 2 193,1400 0,532 -chrII 392961 394892 HC_gene_0284_tx_116 1 + 392961 394892 . 1 1932 0 -chrII 392961 394892 HC_gene_0284_tx_117 1 + 392961 394892 . 2 190,1403 0,529 -chrII 392961 394893 HC_gene_0284_tx_118 2 + 392961 394893 . 2 220,1383 0,550 -chrII 392961 394894 HC_gene_0284_tx_119 1 + 392961 394894 . 2 220,1384 0,550 -chrII 392961 394895 HC_gene_0284_tx_120 6 + 392961 394895 . 2 220,1385 0,550 -chrII 392961 394898 HC_gene_0284_tx_121 2 + 392961 394898 . 2 220,1388 0,550 -chrII 392961 394900 HC_gene_0284_tx_122 1 + 392961 394900 . 2 220,1390 0,550 -chrII 392961 394900 HC_gene_0284_tx_123 1 + 392961 394900 . 2 220,1393 0,547 -chrII 392961 394901 HC_gene_0284_tx_124 21 + 392961 394901 . 2 220,1391 0,550 -chrII 392961 394902 HC_gene_0284_tx_125 1 + 392961 394902 . 2 213,1410 0,532 -chrII 392961 394902 HC_gene_0284_tx_126 1 + 392961 394902 . 2 220,1392 0,550 -chrII 392961 394904 HC_gene_0284_tx_127 8 + 392961 394904 . 2 220,1394 0,550 -chrII 392961 394904 HC_gene_0284_tx_128 1 + 392961 394904 . 2 213,1412 0,532 -chrII 392961 394905 HC_gene_0284_tx_129 5 + 392961 394905 . 2 220,1395 0,550 -chrII 392961 394906 HC_gene_0284_tx_130 1 + 392961 394906 . 2 220,1396 0,550 -chrII 392961 394907 HC_gene_0284_tx_131 2 + 392961 394907 . 2 220,1397 0,550 -chrII 392961 394908 HC_gene_0284_tx_132 1 + 392961 394908 . 2 184,1425 0,523 -chrII 392961 394909 HC_gene_0284_tx_133 11 + 392961 394909 . 2 220,1399 0,550 -chrII 392961 394909 HC_gene_0284_tx_134 1 + 392961 394909 . 3 220,675,457 0,550,1492 -chrII 392961 394909 HC_gene_0284_tx_135 1 + 392961 394909 . 2 217,1386 0,563 -chrII 392961 394910 HC_gene_0284_tx_136 1 + 392961 394910 . 2 220,1400 0,550 -chrII 392961 394911 HC_gene_0284_tx_137 1 + 392961 394911 . 2 178,1419 0,532 -chrII 392961 394911 HC_gene_0284_tx_138 2 + 392961 394911 . 2 220,1401 0,550 -chrII 392961 394912 HC_gene_0284_tx_139 6 + 392961 394912 . 2 220,1402 0,550 -chrII 392961 394914 HC_gene_0284_tx_140 1 + 392961 394914 . 2 248,1391 0,563 -chrII 392961 394914 HC_gene_0284_tx_141 1 + 392961 394914 . 2 220,1404 0,550 -chrII 392961 394915 HC_gene_0284_tx_142 1 + 392961 394915 . 2 220,1405 0,550 -chrII 392961 394918 HC_gene_0284_tx_143 3 + 392961 394918 . 2 220,1408 0,550 -chrII 392961 394922 HC_gene_0284_tx_144 9 + 392961 394922 . 2 220,1412 0,550 -chrII 392961 394922 HC_gene_0284_tx_145 1 + 392961 394922 . 2 213,1407 0,555 -chrII 392961 394922 HC_gene_0284_tx_146 1 + 392961 394922 . 2 220,1415 0,547 -chrII 392961 394924 HC_gene_0284_tx_147 3 + 392961 394924 . 2 220,1414 0,550 -chrII 392961 394927 HC_gene_0284_tx_148 3 + 392961 394927 . 2 220,1417 0,550 -chrII 392961 394927 HC_gene_0284_tx_149 1 + 392961 394927 . 2 217,1404 0,563 -chrII 392961 394928 HC_gene_0284_tx_150 2 + 392961 394928 . 2 220,1418 0,550 -chrII 392961 394931 HC_gene_0284_tx_151 1 + 392961 394931 . 2 220,1421 0,550 -chrII 392961 394931 HC_gene_0284_tx_152 1 + 392961 394931 . 1 1971 0 -chrII 392961 394932 HC_gene_0284_tx_153 1 + 392961 394932 . 2 198,1443 0,529 -chrII 392961 394932 HC_gene_0284_tx_154 1 + 392961 394932 . 2 220,1422 0,550 -chrII 392961 394934 HC_gene_0284_tx_155 1 + 392961 394934 . 2 220,1424 0,550 -chrII 392961 394937 HC_gene_0284_tx_156 4 + 392961 394937 . 2 220,1427 0,550 -chrII 392961 394938 HC_gene_0284_tx_157 4 + 392961 394938 . 2 220,1428 0,550 -chrII 392961 394938 HC_gene_0284_tx_158 1 + 392961 394938 . 2 217,1446 0,532 -chrII 392961 394940 HC_gene_0284_tx_159 1 + 392961 394940 . 2 220,1430 0,550 -chrII 392961 394947 HC_gene_0284_tx_160 1 + 392961 394947 . 2 220,1437 0,550 -chrII 392961 394948 HC_gene_0284_tx_161 1 + 392961 394948 . 2 220,1438 0,550 -chrII 392961 394949 HC_gene_0284_tx_162 1 + 392961 394949 . 2 220,1439 0,550 -chrII 392961 394950 HC_gene_0284_tx_163 1 + 392961 394950 . 2 220,1440 0,550 -chrII 392961 394951 HC_gene_0284_tx_164 2 + 392961 394951 . 2 220,1441 0,550 -chrII 392961 394953 HC_gene_0284_tx_165 2 + 392961 394953 . 2 220,1443 0,550 -chrII 392961 394954 HC_gene_0284_tx_166 1 + 392961 394954 . 2 213,1439 0,555 -chrII 392961 394956 HC_gene_0284_tx_167 1 + 392961 394956 . 2 220,1446 0,550 -chrII 392961 394957 HC_gene_0284_tx_168 3 + 392961 394957 . 2 220,1447 0,550 -chrII 392961 394958 HC_gene_0284_tx_169 4 + 392961 394958 . 2 220,1448 0,550 -chrII 392961 394959 HC_gene_0284_tx_170 1 + 392961 394959 . 2 220,1449 0,550 -chrII 392961 394959 HC_gene_0284_tx_171 1 + 392961 394959 . 1 1999 0 -chrII 392961 394961 HC_gene_0284_tx_172 1 + 392961 394961 . 2 220,1451 0,550 -chrII 392961 394964 HC_gene_0284_tx_173 1 + 392961 394964 . 3 220,317,1063 0,550,941 -chrII 392961 394965 HC_gene_0284_tx_174 1 + 392961 394965 . 2 220,1455 0,550 -chrII 392961 394966 HC_gene_0284_tx_175 3 + 392961 394966 . 2 220,1456 0,550 -chrII 392961 394967 HC_gene_0284_tx_176 1 + 392961 394967 . 2 220,1457 0,550 -chrII 392961 394969 HC_gene_0284_tx_177 1 + 392961 394969 . 2 220,1459 0,550 -chrII 392961 394971 HC_gene_0284_tx_178 3 + 392961 394971 . 2 220,1461 0,550 -chrII 392961 394973 HC_gene_0284_tx_179 2 + 392961 394973 . 2 220,1463 0,550 -chrII 392961 394974 HC_gene_0284_tx_180 2 + 392961 394974 . 2 198,1482 0,532 -chrII 392961 394974 HC_gene_0284_tx_181 1 + 392961 394974 . 1 2014 0 -chrII 392961 394974 HC_gene_0284_tx_182 1 + 392961 394974 . 2 220,1464 0,550 -chrII 392961 394975 HC_gene_0284_tx_183 8 + 392961 394975 . 2 220,1465 0,550 -chrII 392961 394976 HC_gene_0284_tx_184 2 + 392961 394976 . 2 220,1466 0,550 -chrII 392961 394976 HC_gene_0284_tx_185 1 + 392961 394976 . 2 149,1487 0,529 -chrII 392961 394978 HC_gene_0284_tx_186 2 + 392961 394978 . 2 220,1468 0,550 -chrII 392961 394982 HC_gene_0284_tx_187 1 + 392961 394982 . 2 213,1490 0,532 -chrII 392961 394984 HC_gene_0284_tx_188 1 + 392961 394984 . 2 220,1474 0,550 -chrII 392961 394986 HC_gene_0284_tx_189 1 + 392961 394986 . 2 220,1476 0,550 -chrII 392961 394990 HC_gene_0284_tx_190 1 + 392961 394990 . 2 220,1480 0,550 -chrII 392961 394991 HC_gene_0284_tx_191 1 + 392961 394991 . 2 220,1481 0,550 -chrII 392961 395000 HC_gene_0284_tx_192 4 + 392961 395000 . 2 220,1490 0,550 -chrII 392961 395001 HC_gene_0284_tx_193 4 + 392961 395001 . 2 220,1491 0,550 -chrII 392961 395002 HC_gene_0284_tx_194 1 + 392961 395002 . 2 217,1479 0,563 -chrII 392961 395002 HC_gene_0284_tx_195 2 + 392961 395002 . 2 220,1492 0,550 -chrII 392961 395003 HC_gene_0284_tx_196 2 + 392961 395003 . 2 220,1493 0,550 -chrII 392961 395008 HC_gene_0284_tx_197 1 + 392961 395008 . 2 220,1498 0,550 -chrII 392961 395010 HC_gene_0284_tx_198 3 + 392961 395010 . 2 220,1500 0,550 -chrII 392961 395011 HC_gene_0284_tx_199 2 + 392961 395011 . 2 220,1501 0,550 -chrII 392961 395013 HC_gene_0284_tx_200 1 + 392961 395013 . 2 220,1503 0,550 -chrII 392961 395014 HC_gene_0284_tx_201 4 + 392961 395014 . 2 220,1504 0,550 -chrII 392961 395014 HC_gene_0284_tx_202 1 + 392961 395014 . 2 193,1531 0,523 -chrII 392961 395015 HC_gene_0284_tx_203 4 + 392961 395015 . 2 220,1505 0,550 -chrII 392961 395016 HC_gene_0284_tx_204 1 + 392961 395016 . 2 220,1506 0,550 -chrII 392961 395017 HC_gene_0284_tx_205 3 + 392961 395017 . 2 220,1507 0,550 -chrII 392961 395018 HC_gene_0284_tx_206 1 + 392961 395018 . 2 220,1508 0,550 -chrII 392961 395019 HC_gene_0284_tx_207 1 + 392961 395019 . 2 220,1509 0,550 -chrII 392961 395021 HC_gene_0284_tx_208 11 + 392961 395021 . 2 220,1511 0,550 -chrII 392961 395021 HC_gene_0284_tx_209 1 + 392961 395021 . 2 217,1506 0,555 -chrII 392961 395021 HC_gene_0284_tx_210 1 + 392961 395021 . 2 213,1510 0,551 -chrII 392961 395021 HC_gene_0284_tx_211 1 + 392961 395021 . 2 155,1237 0,824 -chrII 392961 395022 HC_gene_0284_tx_212 1 + 392961 395022 . 2 220,1512 0,550 -chrII 392961 395249 HC_gene_0284_tx_213 638 + 392961 395249 . 2 220,1739 0,550 -chrII 392961 395249 HC_gene_0284_tx_214 1 + 392961 395249 . 2 28,1232 0,1057 -chrII 392961 395249 HC_gene_0284_tx_215 3 + 392961 395249 . 2 213,1760 0,529 -chrII 392961 395249 HC_gene_0284_tx_216 13 + 392961 395249 . 2 217,1726 0,563 -chrII 392961 395249 HC_gene_0284_tx_217 2 + 392961 395249 . 2 190,1757 0,532 -chrII 392961 395249 HC_gene_0284_tx_218 1 + 392961 395249 . 2 206,1760 0,529 -chrII 392961 395249 HC_gene_0284_tx_219 1 + 392961 395249 . 3 220,139,1159 0,550,1130 -chrII 392961 395249 HC_gene_0284_tx_220 1 + 392961 395249 . 2 36,1629 0,660 -chrII 392961 395249 HC_gene_0284_tx_221 1 + 392961 395249 . 3 220,434,1171 0,550,1118 -chrII 392961 395249 HC_gene_0284_tx_222 2 + 392961 395249 . 2 217,1757 0,532 -chrII 392961 395249 HC_gene_0284_tx_223 6 + 392961 395249 . 2 198,1757 0,532 -chrII 392961 395249 HC_gene_0284_tx_224 1 + 392961 395249 . 2 198,1766 0,523 -chrII 392961 395249 HC_gene_0284_tx_225 2 + 392961 395249 . 2 202,1739 0,550 -chrII 392961 395249 HC_gene_0284_tx_226 4 + 392961 395249 . 2 213,1757 0,532 -chrII 392961 395249 HC_gene_0284_tx_227 1 + 392961 395249 . 3 295,338,1132 0,701,1157 -chrII 392961 395249 HC_gene_0284_tx_228 1 + 392961 395249 . 2 217,1760 0,529 -chrII 392961 395249 HC_gene_0284_tx_229 3 + 392961 395249 . 2 213,1726 0,563 -chrII 392961 395249 HC_gene_0284_tx_230 1 + 392961 395249 . 2 268,1726 0,563 -chrII 392961 395249 HC_gene_0284_tx_231 2 + 392961 395249 . 2 213,1734 0,555 -chrII 392961 395249 HC_gene_0284_tx_232 1 + 392961 395249 . 2 256,1726 0,563 -chrII 392961 395249 HC_gene_0284_tx_233 1 + 392961 395249 . 2 480,1739 0,550 -chrII 392961 395249 HC_gene_0284_tx_234 1 + 392961 395249 . 3 220,152,623 0,550,1666 -chrII 392961 395249 HC_gene_0284_tx_235 1 + 392961 395249 . 2 217,1734 0,555 -chrII 392961 395249 HC_gene_0284_tx_236 1 + 392961 395249 . 3 220,1083,582 0,550,1707 -chrII 392961 395249 HC_gene_0284_tx_237 2 + 392961 395249 . 2 187,1757 0,532 -chrII 392961 395249 HC_gene_0284_tx_238 1 + 392961 395249 . 2 220,1719 0,570 -chrII 392961 395249 HC_gene_0284_tx_239 1 + 392961 395249 . 2 268,1687 0,602 -chrII 392961 395249 HC_gene_0284_tx_240 3 + 392961 395249 . 2 184,1760 0,529 -chrII 392961 395249 HC_gene_0284_tx_241 1 + 392961 395249 . 2 248,1726 0,563 -chrII 392961 395249 HC_gene_0284_tx_242 4 + 392961 395249 . 2 220,1742 0,547 -chrII 392961 395249 HC_gene_0284_tx_243 2 + 392961 395249 . 1 2289 0 -chrII 392961 395249 HC_gene_0284_tx_244 1 + 392961 395249 . 2 213,1738 0,551 -chrII 392961 395249 HC_gene_0284_tx_245 1 + 392961 395249 . 2 149,1760 0,529 -chrII 392961 395249 HC_gene_0284_tx_246 1 + 392961 395249 . 4 213,1173,183,301 0,529,1769,1988 -chrII 392961 395249 HC_gene_0284_tx_247 1 + 392961 395249 . 3 213,1040,553 0,532,1736 -chrII 392961 395249 HC_gene_0284_tx_248 1 + 392961 395249 . 2 198,1760 0,529 -chrII 392961 395249 HC_gene_0284_tx_249 1 + 392961 395249 . 3 220,509,1000 0,550,1289 -chrII 392961 395249 HC_gene_0284_tx_250 1 + 392961 395249 . 2 150,1232 0,1057 -chrII 392961 395249 HC_gene_0284_tx_251 1 + 392961 395249 . 3 220,993,557 0,550,1732 -chrII 392961 395249 HC_gene_0284_tx_252 1 + 392961 395249 . 2 149,1757 0,532 -chrII 392961 395249 HC_gene_0284_tx_253 1 + 392961 395249 . 2 73,1239 0,1050 -chrII 392961 395249 HC_gene_0284_tx_254 1 + 392961 395249 . 2 149,1726 0,563 -chrII 392961 395249 HC_gene_0284_tx_255 1 + 392961 395249 . 3 220,759,847 0,550,1442 -chrII 392961 395249 HC_gene_0284_tx_256 1 + 392961 395249 . 2 193,1766 0,523 -chrII 392961 395249 HC_gene_0284_tx_257 1 + 392961 395249 . 2 156,870 0,1419 -chrII 392961 395249 HC_gene_0284_tx_258 1 + 392961 395249 . 3 220,804,817 0,550,1472 -chrII 392961 395249 HC_gene_0284_tx_259 1 + 392961 395249 . 2 213,1766 0,523 -chrII 392961 395380 HC_gene_0284_tx_260 14 + 392961 395380 . 2 220,1870 0,550 -chrII 392961 395380 HC_gene_0284_tx_261 1 + 392961 395380 . 1 2420 0 -chrII 392961 395380 HC_gene_0284_tx_262 2 + 392961 395380 . 2 217,1857 0,563 -chrII 392961 395380 HC_gene_0284_tx_263 1 + 392961 395380 . 2 217,1891 0,529 -chrII 392961 395380 HC_gene_0284_tx_264 1 + 392961 395380 . 3 220,1080,713 0,550,1707 -chrII 392961 395380 HC_gene_0284_tx_265 1 + 392961 395380 . 3 220,999,512 0,550,1908 -chrII 392962 394876 HC_gene_0284_tx_266 1 + 392962 394876 . 2 223,1366 0,549 -chrII 392962 394949 HC_gene_0284_tx_267 1 + 392962 394949 . 2 223,1439 0,549 -chrII 392962 394973 HC_gene_0284_tx_268 1 + 392962 394973 . 2 223,1463 0,549 -chrII 392962 395249 HC_gene_0284_tx_269 2 + 392962 395249 . 2 223,1739 0,549 -chrII 392962 395380 HC_gene_0284_tx_270 1 + 392962 395380 . 2 223,1870 0,549 -chrII 392963 394800 HC_gene_0284_tx_271 1 + 392963 394800 . 2 222,1290 0,548 -chrII 392963 394811 HC_gene_0284_tx_272 1 + 392963 394811 . 2 222,1301 0,548 -chrII 392963 394875 HC_gene_0284_tx_273 1 + 392963 394875 . 2 222,1365 0,548 -chrII 392963 394878 HC_gene_0284_tx_274 1 + 392963 394878 . 2 222,1274 0,642 -chrII 392963 394898 HC_gene_0284_tx_275 1 + 392963 394898 . 2 231,1375 0,561 -chrII 392963 394922 HC_gene_0284_tx_276 1 + 392963 394922 . 2 231,1399 0,561 -chrII 392963 394952 HC_gene_0284_tx_277 1 + 392963 394952 . 2 222,1442 0,548 -chrII 392963 394966 HC_gene_0284_tx_278 1 + 392963 394966 . 2 98,1443 0,561 -chrII 392963 395013 HC_gene_0284_tx_279 1 + 392963 395013 . 2 222,1503 0,548 -chrII 392963 395249 HC_gene_0284_tx_280 9 + 392963 395249 . 2 222,1739 0,548 -chrII 392963 395249 HC_gene_0284_tx_281 1 + 392963 395249 . 2 103,1642 0,645 -chrII 392964 394888 HC_gene_0284_tx_282 1 + 392964 394888 . 2 221,1378 0,547 -chrII 392964 394891 HC_gene_0284_tx_283 1 + 392964 394891 . 2 221,1381 0,547 -chrII 392964 394922 HC_gene_0284_tx_284 1 + 392964 394922 . 2 221,1412 0,547 -chrII 392965 395249 HC_gene_0284_tx_285 1 + 392965 395249 . 2 220,1739 0,546 -chrII 392967 395249 HC_gene_0284_tx_286 1 + 392967 395249 . 2 218,1739 0,544 -chrII 392968 395249 HC_gene_0284_tx_287 1 + 392968 395249 . 2 217,1739 0,543 -chrII 392969 394845 HC_gene_0284_tx_288 1 + 392969 394845 . 2 216,1335 0,542 -chrII 392969 394871 HC_gene_0284_tx_289 1 + 392969 394871 . 2 216,1361 0,542 -chrII 392969 394880 HC_gene_0284_tx_290 1 + 392969 394880 . 2 216,1370 0,542 -chrII 392969 395249 HC_gene_0284_tx_291 1 + 392969 395249 . 2 216,1705 0,576 -chrII 392969 395249 HC_gene_0284_tx_292 1 + 392969 395249 . 2 225,1726 0,555 -chrII 392969 395249 HC_gene_0284_tx_293 1 + 392969 395249 . 2 216,1739 0,542 -chrII 392969 395380 HC_gene_0284_tx_294 1 + 392969 395380 . 2 225,1857 0,555 -chrII 392970 395014 HC_gene_0284_tx_295 1 + 392970 395014 . 2 215,1504 0,541 -chrII 392970 395249 HC_gene_0284_tx_296 1 + 392970 395249 . 2 215,1739 0,541 -chrII 392971 394882 HC_gene_0284_tx_297 1 + 392971 394882 . 2 214,1372 0,540 -chrII 392972 394853 HC_gene_0284_tx_298 1 + 392972 394853 . 2 213,1343 0,539 -chrII 392972 395249 HC_gene_0284_tx_299 1 + 392972 395249 . 2 225,1726 0,552 -chrII 392972 395249 HC_gene_0284_tx_300 1 + 392972 395249 . 2 213,1739 0,539 -chrII 392972 395249 HC_gene_0284_tx_301 1 + 392972 395249 . 2 222,1726 0,552 -chrII 392975 394798 HC_gene_0284_tx_302 1 + 392975 394798 . 2 210,1288 0,536 -chrII 392975 394864 HC_gene_0284_tx_303 1 + 392975 394864 . 2 210,1354 0,536 -chrII 392975 394884 HC_gene_0284_tx_304 1 + 392975 394884 . 2 210,1374 0,536 -chrII 392975 394918 HC_gene_0284_tx_305 1 + 392975 394918 . 2 210,1408 0,536 -chrII 392975 395249 HC_gene_0284_tx_306 8 + 392975 395249 . 2 210,1739 0,536 -chrII 392977 395249 HC_gene_0284_tx_307 1 + 392977 395249 . 2 208,1739 0,534 -chrII 392980 395016 HC_gene_0284_tx_308 1 + 392980 395016 . 2 205,1506 0,531 -chrII 392980 395249 HC_gene_0284_tx_309 1 + 392980 395249 . 2 205,1739 0,531 -chrII 392983 395249 HC_gene_0284_tx_310 1 + 392983 395249 . 2 214,1726 0,541 -chrII 392985 395249 HC_gene_0284_tx_311 1 + 392985 395249 . 2 200,1739 0,526 -chrII 392988 395249 HC_gene_0284_tx_312 1 + 392988 395249 . 2 206,1726 0,536 -chrII 392993 395249 HC_gene_0284_tx_313 1 + 392993 395249 . 2 192,1739 0,518 -chrII 393057 394807 HC_gene_0284_tx_314 1 + 393057 394807 . 2 152,1324 0,427 -chrII 393057 394838 HC_gene_0284_tx_315 1 + 393057 394838 . 2 124,1328 0,454 -chrII 393057 394845 HC_gene_0284_tx_316 1 + 393057 394845 . 2 124,1335 0,454 -chrII 393057 394881 HC_gene_0284_tx_317 1 + 393057 394881 . 2 124,1371 0,454 -chrII 393057 394895 HC_gene_0284_tx_318 1 + 393057 394895 . 2 124,1385 0,454 -chrII 393057 394923 HC_gene_0284_tx_319 1 + 393057 394923 . 2 115,806 0,1061 -chrII 393057 395249 HC_gene_0284_tx_320 3 + 393057 395249 . 2 124,1739 0,454 -chrII 393057 395249 HC_gene_0284_tx_321 1 + 393057 395249 . 2 117,1726 0,467 -chrII 393057 395249 HC_gene_0284_tx_322 1 + 393057 395249 . 3 124,725,569 0,454,1624 -chrII 393057 395249 HC_gene_0284_tx_323 1 + 393057 395249 . 2 121,1726 0,467 -chrII 393140 395014 HC_gene_0284_tx_324 1 + 393140 395014 . 2 41,1504 0,371 -chrII 393140 395249 HC_gene_0284_tx_325 2 + 393140 395249 . 2 41,1739 0,371 -chrII 393143 395380 HC_gene_0284_tx_326 1 + 393143 395380 . 2 38,1870 0,368 -chrII 393144 395249 HC_gene_0284_tx_327 1 + 393144 395249 . 2 37,1739 0,367 -chrII 393149 395249 HC_gene_0284_tx_328 2 + 393149 395249 . 2 32,1739 0,362 -chrII 393149 395249 HC_gene_0284_tx_329 1 + 393149 395249 . 3 32,1197,415 0,362,1686 -chrII 393181 394883 HC_gene_0284_tx_330 1 + 393181 394883 . 1 1703 0 -chrII 393181 395000 HC_gene_0284_tx_331 1 + 393181 395000 . 1 1820 0 -chrII 393181 395249 HC_gene_0284_tx_332 2 + 393181 395249 . 1 2069 0 -chrII 393476 394798 HC_gene_0284_tx_333 1 + 393476 394798 . 1 1323 0 -chrII 393476 394813 HC_gene_0284_tx_334 1 + 393476 394813 . 1 1338 0 -chrII 393476 394826 HC_gene_0284_tx_335 1 + 393476 394826 . 1 1351 0 -chrII 393476 394843 HC_gene_0284_tx_336 1 + 393476 394843 . 1 1368 0 -chrII 393476 394844 HC_gene_0284_tx_337 1 + 393476 394844 . 1 1369 0 -chrII 393476 394850 HC_gene_0284_tx_338 1 + 393476 394850 . 1 1375 0 -chrII 393476 394851 HC_gene_0284_tx_339 1 + 393476 394851 . 1 1376 0 -chrII 393476 394853 HC_gene_0284_tx_340 2 + 393476 394853 . 1 1378 0 -chrII 393476 394864 HC_gene_0284_tx_341 1 + 393476 394864 . 1 1389 0 -chrII 393476 394865 HC_gene_0284_tx_342 1 + 393476 394865 . 1 1390 0 -chrII 393476 394866 HC_gene_0284_tx_343 1 + 393476 394866 . 2 485,733 0,658 -chrII 393476 394877 HC_gene_0284_tx_344 1 + 393476 394877 . 1 1402 0 -chrII 393476 394879 HC_gene_0284_tx_345 2 + 393476 394879 . 1 1404 0 -chrII 393476 394881 HC_gene_0284_tx_346 1 + 393476 394881 . 1 1406 0 -chrII 393476 394883 HC_gene_0284_tx_347 1 + 393476 394883 . 1 1408 0 -chrII 393476 394890 HC_gene_0284_tx_348 1 + 393476 394890 . 1 1415 0 -chrII 393476 394891 HC_gene_0284_tx_349 10 + 393476 394891 . 1 1416 0 -chrII 393476 394895 HC_gene_0284_tx_350 2 + 393476 394895 . 1 1420 0 -chrII 393476 394899 HC_gene_0284_tx_351 1 + 393476 394899 . 1 1424 0 -chrII 393476 394901 HC_gene_0284_tx_352 3 + 393476 394901 . 1 1426 0 -chrII 393476 394904 HC_gene_0284_tx_353 1 + 393476 394904 . 1 1429 0 -chrII 393476 394905 HC_gene_0284_tx_354 1 + 393476 394905 . 1 1430 0 -chrII 393476 394910 HC_gene_0284_tx_355 1 + 393476 394910 . 1 1435 0 -chrII 393476 394921 HC_gene_0284_tx_356 1 + 393476 394921 . 1 1446 0 -chrII 393476 394928 HC_gene_0284_tx_357 1 + 393476 394928 . 1 1453 0 -chrII 393476 394929 HC_gene_0284_tx_358 1 + 393476 394929 . 1 1454 0 -chrII 393476 394937 HC_gene_0284_tx_359 1 + 393476 394937 . 1 1462 0 -chrII 393476 394949 HC_gene_0284_tx_360 1 + 393476 394949 . 1 1474 0 -chrII 393476 394960 HC_gene_0284_tx_361 1 + 393476 394960 . 1 1485 0 -chrII 393476 394975 HC_gene_0284_tx_362 1 + 393476 394975 . 1 1500 0 -chrII 393476 394976 HC_gene_0284_tx_363 1 + 393476 394976 . 1 1501 0 -chrII 393476 395014 HC_gene_0284_tx_364 1 + 393476 395014 . 1 1539 0 -chrII 393476 395016 HC_gene_0284_tx_365 1 + 393476 395016 . 1 1541 0 -chrII 393476 395017 HC_gene_0284_tx_366 1 + 393476 395017 . 1 1542 0 -chrII 393476 395249 HC_gene_0284_tx_367 55 + 393476 395249 . 1 1774 0 -chrII 393476 395249 HC_gene_0284_tx_368 1 + 393476 395249 . 2 330,817 0,957 -chrII 393476 395249 HC_gene_0284_tx_369 1 + 393476 395249 . 2 530,916 0,858 -chrII 393476 395380 HC_gene_0284_tx_370 5 + 393476 395380 . 1 1905 0 -chrII 393642 394806 HC_gene_0284_tx_371 1 + 393642 394806 . 1 1165 0 -chrII 393642 394813 HC_gene_0284_tx_372 1 + 393642 394813 . 1 1172 0 -chrII 393642 394835 HC_gene_0284_tx_373 1 + 393642 394835 . 1 1194 0 -chrII 393642 394836 HC_gene_0284_tx_374 1 + 393642 394836 . 1 1195 0 -chrII 393642 394837 HC_gene_0284_tx_375 1 + 393642 394837 . 1 1196 0 -chrII 393642 394845 HC_gene_0284_tx_376 1 + 393642 394845 . 1 1204 0 -chrII 393642 394850 HC_gene_0284_tx_377 1 + 393642 394850 . 1 1209 0 -chrII 393642 394861 HC_gene_0284_tx_378 2 + 393642 394861 . 1 1220 0 -chrII 393642 394864 HC_gene_0284_tx_379 2 + 393642 394864 . 1 1223 0 -chrII 393642 394866 HC_gene_0284_tx_380 1 + 393642 394866 . 1 1225 0 -chrII 393642 394871 HC_gene_0284_tx_381 2 + 393642 394871 . 1 1230 0 -chrII 393642 394875 HC_gene_0284_tx_382 1 + 393642 394875 . 1 1234 0 -chrII 393642 394878 HC_gene_0284_tx_383 2 + 393642 394878 . 1 1237 0 -chrII 393642 394880 HC_gene_0284_tx_384 1 + 393642 394880 . 1 1239 0 -chrII 393642 394881 HC_gene_0284_tx_385 3 + 393642 394881 . 1 1240 0 -chrII 393642 394882 HC_gene_0284_tx_386 2 + 393642 394882 . 1 1241 0 -chrII 393642 394883 HC_gene_0284_tx_387 4 + 393642 394883 . 1 1242 0 -chrII 393642 394884 HC_gene_0284_tx_388 5 + 393642 394884 . 1 1243 0 -chrII 393642 394885 HC_gene_0284_tx_389 4 + 393642 394885 . 1 1244 0 -chrII 393642 394885 HC_gene_0284_tx_390 1 + 393642 394885 . 2 697,453 0,791 -chrII 393642 394887 HC_gene_0284_tx_391 2 + 393642 394887 . 1 1246 0 -chrII 393642 394890 HC_gene_0284_tx_392 1 + 393642 394890 . 1 1249 0 -chrII 393642 394891 HC_gene_0284_tx_393 8 + 393642 394891 . 1 1250 0 -chrII 393642 394892 HC_gene_0284_tx_394 1 + 393642 394892 . 1 1251 0 -chrII 393642 394895 HC_gene_0284_tx_395 2 + 393642 394895 . 1 1254 0 -chrII 393642 394897 HC_gene_0284_tx_396 1 + 393642 394897 . 1 1256 0 -chrII 393642 394898 HC_gene_0284_tx_397 2 + 393642 394898 . 1 1257 0 -chrII 393642 394900 HC_gene_0284_tx_398 1 + 393642 394900 . 1 1259 0 -chrII 393642 394901 HC_gene_0284_tx_399 3 + 393642 394901 . 1 1260 0 -chrII 393642 394908 HC_gene_0284_tx_400 1 + 393642 394908 . 1 1267 0 -chrII 393642 394909 HC_gene_0284_tx_401 1 + 393642 394909 . 1 1268 0 -chrII 393642 394912 HC_gene_0284_tx_402 1 + 393642 394912 . 1 1271 0 -chrII 393642 394916 HC_gene_0284_tx_403 1 + 393642 394916 . 1 1275 0 -chrII 393642 394918 HC_gene_0284_tx_404 1 + 393642 394918 . 1 1277 0 -chrII 393642 394922 HC_gene_0284_tx_405 1 + 393642 394922 . 1 1281 0 -chrII 393642 394924 HC_gene_0284_tx_406 1 + 393642 394924 . 1 1283 0 -chrII 393642 394927 HC_gene_0284_tx_407 1 + 393642 394927 . 1 1286 0 -chrII 393642 394930 HC_gene_0284_tx_408 1 + 393642 394930 . 1 1289 0 -chrII 393642 394931 HC_gene_0284_tx_409 1 + 393642 394931 . 1 1290 0 -chrII 393642 394938 HC_gene_0284_tx_410 1 + 393642 394938 . 1 1297 0 -chrII 393642 394939 HC_gene_0284_tx_411 1 + 393642 394939 . 1 1298 0 -chrII 393642 394943 HC_gene_0284_tx_412 1 + 393642 394943 . 1 1302 0 -chrII 393642 394945 HC_gene_0284_tx_413 1 + 393642 394945 . 1 1304 0 -chrII 393642 394947 HC_gene_0284_tx_414 1 + 393642 394947 . 1 1306 0 -chrII 393642 394954 HC_gene_0284_tx_415 1 + 393642 394954 . 1 1313 0 -chrII 393642 394956 HC_gene_0284_tx_416 1 + 393642 394956 . 1 1315 0 -chrII 393642 394958 HC_gene_0284_tx_417 1 + 393642 394958 . 1 1317 0 -chrII 393642 394966 HC_gene_0284_tx_418 2 + 393642 394966 . 1 1325 0 -chrII 393642 394975 HC_gene_0284_tx_419 2 + 393642 394975 . 1 1334 0 -chrII 393642 395000 HC_gene_0284_tx_420 2 + 393642 395000 . 1 1359 0 -chrII 393642 395001 HC_gene_0284_tx_421 2 + 393642 395001 . 1 1360 0 -chrII 393642 395005 HC_gene_0284_tx_422 1 + 393642 395005 . 1 1364 0 -chrII 393642 395006 HC_gene_0284_tx_423 1 + 393642 395006 . 1 1365 0 -chrII 393642 395009 HC_gene_0284_tx_424 1 + 393642 395009 . 1 1368 0 -chrII 393642 395010 HC_gene_0284_tx_425 1 + 393642 395010 . 1 1369 0 -chrII 393642 395011 HC_gene_0284_tx_426 1 + 393642 395011 . 1 1370 0 -chrII 393642 395015 HC_gene_0284_tx_427 1 + 393642 395015 . 1 1374 0 -chrII 393642 395017 HC_gene_0284_tx_428 1 + 393642 395017 . 1 1376 0 -chrII 393642 395017 HC_gene_0284_tx_429 1 + 393642 395017 . 2 232,1089 0,287 -chrII 393642 395021 HC_gene_0284_tx_430 1 + 393642 395021 . 1 1380 0 -chrII 393642 395022 HC_gene_0284_tx_431 2 + 393642 395022 . 1 1381 0 -chrII 393642 395249 HC_gene_0284_tx_432 153 + 393642 395249 . 1 1608 0 -chrII 393642 395249 HC_gene_0284_tx_433 1 + 393642 395249 . 2 601,916 0,692 -chrII 393642 395249 HC_gene_0284_tx_434 1 + 393642 395249 . 2 455,676 0,932 -chrII 393642 395249 HC_gene_0284_tx_435 1 + 393642 395249 . 2 959,512 0,1096 -chrII 393642 395249 HC_gene_0284_tx_436 1 + 393642 395249 . 2 316,635 0,973 -chrII 393642 395249 HC_gene_0284_tx_437 1 + 393642 395249 . 2 573,569 0,1039 -chrII 393642 395380 HC_gene_0284_tx_438 6 + 393642 395380 . 1 1739 0 -chrII 393642 395380 HC_gene_0284_tx_439 1 + 393642 395380 . 2 1567,114 0,1625 -chrII 393642 395380 HC_gene_0284_tx_440 1 + 393642 395380 . 2 642,684 0,1055 -chrII 393780 395249 HC_gene_0284_tx_441 1 + 393780 395249 . 2 69,1000 0,470 -chrII 393830 394795 HC_gene_0284_tx_442 1 + 393830 394795 . 1 966 0 -chrII 393830 394799 HC_gene_0284_tx_443 1 + 393830 394799 . 1 970 0 -chrII 393830 394803 HC_gene_0284_tx_444 1 + 393830 394803 . 1 974 0 -chrII 393830 394809 HC_gene_0284_tx_445 1 + 393830 394809 . 1 980 0 -chrII 393830 394813 HC_gene_0284_tx_446 1 + 393830 394813 . 1 984 0 -chrII 393830 394822 HC_gene_0284_tx_447 1 + 393830 394822 . 1 993 0 -chrII 393830 394823 HC_gene_0284_tx_448 1 + 393830 394823 . 1 994 0 -chrII 393830 394837 HC_gene_0284_tx_449 2 + 393830 394837 . 1 1008 0 -chrII 393830 394838 HC_gene_0284_tx_450 2 + 393830 394838 . 1 1009 0 -chrII 393830 394842 HC_gene_0284_tx_451 1 + 393830 394842 . 1 1013 0 -chrII 393830 394844 HC_gene_0284_tx_452 1 + 393830 394844 . 1 1015 0 -chrII 393830 394849 HC_gene_0284_tx_453 1 + 393830 394849 . 1 1020 0 -chrII 393830 394850 HC_gene_0284_tx_454 1 + 393830 394850 . 1 1021 0 -chrII 393830 394857 HC_gene_0284_tx_455 1 + 393830 394857 . 1 1028 0 -chrII 393830 394871 HC_gene_0284_tx_456 1 + 393830 394871 . 1 1042 0 -chrII 393830 394873 HC_gene_0284_tx_457 1 + 393830 394873 . 1 1044 0 -chrII 393830 394876 HC_gene_0284_tx_458 1 + 393830 394876 . 1 1047 0 -chrII 393830 394877 HC_gene_0284_tx_459 3 + 393830 394877 . 1 1048 0 -chrII 393830 394878 HC_gene_0284_tx_460 2 + 393830 394878 . 1 1049 0 -chrII 393830 394878 HC_gene_0284_tx_461 1 + 393830 394878 . 2 761,198 0,851 -chrII 393830 394879 HC_gene_0284_tx_462 1 + 393830 394879 . 1 1050 0 -chrII 393830 394881 HC_gene_0284_tx_463 2 + 393830 394881 . 1 1052 0 -chrII 393830 394882 HC_gene_0284_tx_464 5 + 393830 394882 . 1 1053 0 -chrII 393830 394883 HC_gene_0284_tx_465 2 + 393830 394883 . 1 1054 0 -chrII 393830 394884 HC_gene_0284_tx_466 1 + 393830 394884 . 1 1055 0 -chrII 393830 394885 HC_gene_0284_tx_467 2 + 393830 394885 . 1 1056 0 -chrII 393830 394886 HC_gene_0284_tx_468 3 + 393830 394886 . 1 1057 0 -chrII 393830 394887 HC_gene_0284_tx_469 1 + 393830 394887 . 1 1058 0 -chrII 393830 394888 HC_gene_0284_tx_470 1 + 393830 394888 . 1 1059 0 -chrII 393830 394889 HC_gene_0284_tx_471 1 + 393830 394889 . 1 1060 0 -chrII 393830 394891 HC_gene_0284_tx_472 4 + 393830 394891 . 1 1062 0 -chrII 393830 394892 HC_gene_0284_tx_473 1 + 393830 394892 . 1 1063 0 -chrII 393830 394893 HC_gene_0284_tx_474 4 + 393830 394893 . 1 1064 0 -chrII 393830 394895 HC_gene_0284_tx_475 1 + 393830 394895 . 1 1066 0 -chrII 393830 394896 HC_gene_0284_tx_476 1 + 393830 394896 . 1 1067 0 -chrII 393830 394898 HC_gene_0284_tx_477 1 + 393830 394898 . 1 1069 0 -chrII 393830 394900 HC_gene_0284_tx_478 1 + 393830 394900 . 1 1071 0 -chrII 393830 394901 HC_gene_0284_tx_479 4 + 393830 394901 . 1 1072 0 -chrII 393830 394903 HC_gene_0284_tx_480 1 + 393830 394903 . 1 1074 0 -chrII 393830 394904 HC_gene_0284_tx_481 1 + 393830 394904 . 1 1075 0 -chrII 393830 394909 HC_gene_0284_tx_482 3 + 393830 394909 . 1 1080 0 -chrII 393830 394912 HC_gene_0284_tx_483 2 + 393830 394912 . 1 1083 0 -chrII 393830 394922 HC_gene_0284_tx_484 1 + 393830 394922 . 1 1093 0 -chrII 393830 394928 HC_gene_0284_tx_485 1 + 393830 394928 . 1 1099 0 -chrII 393830 394931 HC_gene_0284_tx_486 1 + 393830 394931 . 1 1102 0 -chrII 393830 394938 HC_gene_0284_tx_487 1 + 393830 394938 . 2 566,466 0,643 -chrII 393830 394943 HC_gene_0284_tx_488 1 + 393830 394943 . 1 1114 0 -chrII 393830 394958 HC_gene_0284_tx_489 3 + 393830 394958 . 1 1129 0 -chrII 393830 394966 HC_gene_0284_tx_490 1 + 393830 394966 . 1 1137 0 -chrII 393830 394971 HC_gene_0284_tx_491 1 + 393830 394971 . 1 1142 0 -chrII 393830 394976 HC_gene_0284_tx_492 1 + 393830 394976 . 1 1147 0 -chrII 393830 394997 HC_gene_0284_tx_493 1 + 393830 394997 . 1 1168 0 -chrII 393830 395001 HC_gene_0284_tx_494 1 + 393830 395001 . 1 1172 0 -chrII 393830 395002 HC_gene_0284_tx_495 2 + 393830 395002 . 1 1173 0 -chrII 393830 395005 HC_gene_0284_tx_496 1 + 393830 395005 . 1 1176 0 -chrII 393830 395013 HC_gene_0284_tx_497 1 + 393830 395013 . 1 1184 0 -chrII 393830 395014 HC_gene_0284_tx_498 1 + 393830 395014 . 2 578,378 0,807 -chrII 393830 395014 HC_gene_0284_tx_499 1 + 393830 395014 . 1 1185 0 -chrII 393830 395016 HC_gene_0284_tx_500 3 + 393830 395016 . 1 1187 0 -chrII 393830 395021 HC_gene_0284_tx_501 2 + 393830 395021 . 1 1192 0 -chrII 393830 395022 HC_gene_0284_tx_502 2 + 393830 395022 . 1 1193 0 -chrII 393830 395249 HC_gene_0284_tx_503 89 + 393830 395249 . 1 1420 0 -chrII 393830 395249 HC_gene_0284_tx_504 1 + 393830 395249 . 2 614,557 0,863 -chrII 393830 395249 HC_gene_0284_tx_505 1 + 393830 395249 . 2 432,892 0,528 -chrII 393830 395249 HC_gene_0284_tx_506 1 + 393830 395249 . 2 356,955 0,465 -chrII 393830 395249 HC_gene_0284_tx_507 1 + 393830 395249 . 2 351,1000 0,420 -chrII 393830 395380 HC_gene_0284_tx_508 2 + 393830 395380 . 1 1551 0 -chrII 393919 394795 HC_gene_0284_tx_509 1 + 393919 394795 . 1 877 0 -chrII 393919 394818 HC_gene_0284_tx_510 1 + 393919 394818 . 1 900 0 -chrII 393919 394847 HC_gene_0284_tx_511 1 + 393919 394847 . 1 929 0 -chrII 393919 394849 HC_gene_0284_tx_512 1 + 393919 394849 . 1 931 0 -chrII 393919 394850 HC_gene_0284_tx_513 1 + 393919 394850 . 1 932 0 -chrII 393919 394851 HC_gene_0284_tx_514 1 + 393919 394851 . 1 933 0 -chrII 393919 394853 HC_gene_0284_tx_515 1 + 393919 394853 . 1 935 0 -chrII 393919 394861 HC_gene_0284_tx_516 1 + 393919 394861 . 1 943 0 -chrII 393919 394862 HC_gene_0284_tx_517 1 + 393919 394862 . 1 944 0 -chrII 393919 394865 HC_gene_0284_tx_518 1 + 393919 394865 . 1 947 0 -chrII 393919 394871 HC_gene_0284_tx_519 1 + 393919 394871 . 1 953 0 -chrII 393919 394879 HC_gene_0284_tx_520 1 + 393919 394879 . 1 961 0 -chrII 393919 394880 HC_gene_0284_tx_521 1 + 393919 394880 . 1 962 0 -chrII 393919 394881 HC_gene_0284_tx_522 1 + 393919 394881 . 1 963 0 -chrII 393919 394882 HC_gene_0284_tx_523 5 + 393919 394882 . 1 964 0 -chrII 393919 394883 HC_gene_0284_tx_524 1 + 393919 394883 . 1 965 0 -chrII 393919 394885 HC_gene_0284_tx_525 1 + 393919 394885 . 1 967 0 -chrII 393919 394888 HC_gene_0284_tx_526 1 + 393919 394888 . 1 970 0 -chrII 393919 394890 HC_gene_0284_tx_527 1 + 393919 394890 . 1 972 0 -chrII 393919 394891 HC_gene_0284_tx_528 3 + 393919 394891 . 1 973 0 -chrII 393919 394892 HC_gene_0284_tx_529 1 + 393919 394892 . 1 974 0 -chrII 393919 394895 HC_gene_0284_tx_530 1 + 393919 394895 . 1 977 0 -chrII 393919 394897 HC_gene_0284_tx_531 1 + 393919 394897 . 1 979 0 -chrII 393919 394898 HC_gene_0284_tx_532 1 + 393919 394898 . 1 980 0 -chrII 393919 394901 HC_gene_0284_tx_533 3 + 393919 394901 . 1 983 0 -chrII 393919 394901 HC_gene_0284_tx_534 1 + 393919 394901 . 2 627,295 0,688 -chrII 393919 394904 HC_gene_0284_tx_535 1 + 393919 394904 . 1 986 0 -chrII 393919 394905 HC_gene_0284_tx_536 1 + 393919 394905 . 1 987 0 -chrII 393919 394909 HC_gene_0284_tx_537 1 + 393919 394909 . 1 991 0 -chrII 393919 394919 HC_gene_0284_tx_538 1 + 393919 394919 . 1 1001 0 -chrII 393919 394924 HC_gene_0284_tx_539 1 + 393919 394924 . 1 1006 0 -chrII 393919 394937 HC_gene_0284_tx_540 1 + 393919 394937 . 1 1019 0 -chrII 393919 394956 HC_gene_0284_tx_541 1 + 393919 394956 . 1 1038 0 -chrII 393919 394958 HC_gene_0284_tx_542 1 + 393919 394958 . 1 1040 0 -chrII 393919 394966 HC_gene_0284_tx_543 1 + 393919 394966 . 1 1048 0 -chrII 393919 395016 HC_gene_0284_tx_544 2 + 393919 395016 . 1 1098 0 -chrII 393919 395021 HC_gene_0284_tx_545 1 + 393919 395021 . 1 1103 0 -chrII 393919 395249 HC_gene_0284_tx_546 62 + 393919 395249 . 1 1331 0 -chrII 393919 395249 HC_gene_0284_tx_547 1 + 393919 395249 . 2 342,403 0,928 -chrII 393919 395249 HC_gene_0284_tx_548 1 + 393919 395249 . 2 590,700 0,631 -chrII 393919 395380 HC_gene_0284_tx_549 6 + 393919 395380 . 1 1462 0 -chrII 394070 394800 HC_gene_0284_tx_550 1 + 394070 394800 . 1 731 0 -chrII 394070 394806 HC_gene_0284_tx_551 1 + 394070 394806 . 1 737 0 -chrII 394070 394825 HC_gene_0284_tx_552 1 + 394070 394825 . 1 756 0 -chrII 394070 394827 HC_gene_0284_tx_553 1 + 394070 394827 . 1 758 0 -chrII 394070 394844 HC_gene_0284_tx_554 1 + 394070 394844 . 1 775 0 -chrII 394070 394846 HC_gene_0284_tx_555 1 + 394070 394846 . 1 777 0 -chrII 394070 394864 HC_gene_0284_tx_556 1 + 394070 394864 . 1 795 0 -chrII 394070 394871 HC_gene_0284_tx_557 1 + 394070 394871 . 1 802 0 -chrII 394070 394875 HC_gene_0284_tx_558 2 + 394070 394875 . 1 806 0 -chrII 394070 394877 HC_gene_0284_tx_559 3 + 394070 394877 . 1 808 0 -chrII 394070 394881 HC_gene_0284_tx_560 2 + 394070 394881 . 1 812 0 -chrII 394070 394882 HC_gene_0284_tx_561 8 + 394070 394882 . 1 813 0 -chrII 394070 394883 HC_gene_0284_tx_562 2 + 394070 394883 . 1 814 0 -chrII 394070 394884 HC_gene_0284_tx_563 2 + 394070 394884 . 1 815 0 -chrII 394070 394885 HC_gene_0284_tx_564 2 + 394070 394885 . 1 816 0 -chrII 394070 394886 HC_gene_0284_tx_565 2 + 394070 394886 . 1 817 0 -chrII 394070 394887 HC_gene_0284_tx_566 1 + 394070 394887 . 1 818 0 -chrII 394070 394889 HC_gene_0284_tx_567 1 + 394070 394889 . 1 820 0 -chrII 394070 394890 HC_gene_0284_tx_568 1 + 394070 394890 . 1 821 0 -chrII 394070 394891 HC_gene_0284_tx_569 6 + 394070 394891 . 1 822 0 -chrII 394070 394892 HC_gene_0284_tx_570 2 + 394070 394892 . 1 823 0 -chrII 394070 394894 HC_gene_0284_tx_571 1 + 394070 394894 . 1 825 0 -chrII 394070 394895 HC_gene_0284_tx_572 2 + 394070 394895 . 1 826 0 -chrII 394070 394899 HC_gene_0284_tx_573 1 + 394070 394899 . 1 830 0 -chrII 394070 394901 HC_gene_0284_tx_574 9 + 394070 394901 . 1 832 0 -chrII 394070 394901 HC_gene_0284_tx_575 1 + 394070 394901 . 2 476,205 0,627 -chrII 394070 394904 HC_gene_0284_tx_576 3 + 394070 394904 . 1 835 0 -chrII 394070 394911 HC_gene_0284_tx_577 2 + 394070 394911 . 1 842 0 -chrII 394070 394931 HC_gene_0284_tx_578 2 + 394070 394931 . 1 862 0 -chrII 394070 394937 HC_gene_0284_tx_579 1 + 394070 394937 . 1 868 0 -chrII 394070 394938 HC_gene_0284_tx_580 2 + 394070 394938 . 1 869 0 -chrII 394070 394954 HC_gene_0284_tx_581 1 + 394070 394954 . 1 885 0 -chrII 394070 394961 HC_gene_0284_tx_582 1 + 394070 394961 . 1 892 0 -chrII 394070 394966 HC_gene_0284_tx_583 2 + 394070 394966 . 1 897 0 -chrII 394070 394973 HC_gene_0284_tx_584 1 + 394070 394973 . 1 904 0 -chrII 394070 394975 HC_gene_0284_tx_585 2 + 394070 394975 . 1 906 0 -chrII 394070 395003 HC_gene_0284_tx_586 1 + 394070 395003 . 1 934 0 -chrII 394070 395004 HC_gene_0284_tx_587 1 + 394070 395004 . 1 935 0 -chrII 394070 395006 HC_gene_0284_tx_588 1 + 394070 395006 . 1 937 0 -chrII 394070 395010 HC_gene_0284_tx_589 1 + 394070 395010 . 1 941 0 -chrII 394070 395014 HC_gene_0284_tx_590 3 + 394070 395014 . 1 945 0 -chrII 394070 395015 HC_gene_0284_tx_591 2 + 394070 395015 . 1 946 0 -chrII 394070 395021 HC_gene_0284_tx_592 3 + 394070 395021 . 1 952 0 -chrII 394070 395249 HC_gene_0284_tx_593 116 + 394070 395249 . 1 1180 0 -chrII 394070 395249 HC_gene_0284_tx_594 2 + 394070 395249 . 2 147,988 0,192 -chrII 394070 395249 HC_gene_0284_tx_595 1 + 394070 395249 . 2 902,213 0,967 -chrII 394070 395249 HC_gene_0284_tx_596 1 + 394070 395249 . 2 439,700 0,480 -chrII 394070 395249 HC_gene_0284_tx_597 1 + 394070 395249 . 2 843,254 0,926 -chrII 394070 395249 HC_gene_0284_tx_598 1 + 394070 395249 . 2 988,133 0,1047 -chrII 394070 395249 HC_gene_0284_tx_599 1 + 394070 395249 . 2 798,336 0,844 -chrII 394070 395380 HC_gene_0284_tx_600 3 + 394070 395380 . 1 1311 0 -chrII 394395 395249 HC_gene_0284_tx_601 1 + 394395 395249 . 2 16,801 0,54 -chrII 394410 394798 HC_gene_0284_tx_608 1 + 394410 394798 . 1 389 0 -chrII 394410 394800 HC_gene_0284_tx_609 1 + 394410 394800 . 1 391 0 -chrII 394410 394809 HC_gene_0284_tx_610 1 + 394410 394809 . 1 400 0 -chrII 394410 394813 HC_gene_0284_tx_611 1 + 394410 394813 . 1 404 0 -chrII 394410 394815 HC_gene_0284_tx_612 1 + 394410 394815 . 1 406 0 -chrII 394410 394817 HC_gene_0284_tx_613 1 + 394410 394817 . 1 408 0 -chrII 394410 394824 HC_gene_0284_tx_614 1 + 394410 394824 . 1 415 0 -chrII 394410 394825 HC_gene_0284_tx_615 1 + 394410 394825 . 1 416 0 -chrII 394410 394837 HC_gene_0284_tx_616 1 + 394410 394837 . 1 428 0 -chrII 394410 394840 HC_gene_0284_tx_617 1 + 394410 394840 . 1 431 0 -chrII 394410 394845 HC_gene_0284_tx_618 1 + 394410 394845 . 1 436 0 -chrII 394410 394846 HC_gene_0284_tx_619 1 + 394410 394846 . 1 437 0 -chrII 394410 394851 HC_gene_0284_tx_620 1 + 394410 394851 . 1 442 0 -chrII 394410 394853 HC_gene_0284_tx_621 1 + 394410 394853 . 1 444 0 -chrII 394410 394858 HC_gene_0284_tx_622 3 + 394410 394858 . 1 449 0 -chrII 394410 394861 HC_gene_0284_tx_623 1 + 394410 394861 . 1 452 0 -chrII 394410 394864 HC_gene_0284_tx_624 2 + 394410 394864 . 1 455 0 -chrII 394410 394865 HC_gene_0284_tx_625 4 + 394410 394865 . 1 456 0 -chrII 394410 394871 HC_gene_0284_tx_626 3 + 394410 394871 . 1 462 0 -chrII 394410 394872 HC_gene_0284_tx_627 2 + 394410 394872 . 1 463 0 -chrII 394410 394875 HC_gene_0284_tx_628 1 + 394410 394875 . 1 466 0 -chrII 394410 394877 HC_gene_0284_tx_629 2 + 394410 394877 . 1 468 0 -chrII 394410 394878 HC_gene_0284_tx_630 7 + 394410 394878 . 1 469 0 -chrII 394410 394880 HC_gene_0284_tx_631 2 + 394410 394880 . 1 471 0 -chrII 394410 394881 HC_gene_0284_tx_632 6 + 394410 394881 . 1 472 0 -chrII 394410 394882 HC_gene_0284_tx_633 14 + 394410 394882 . 1 473 0 -chrII 394410 394883 HC_gene_0284_tx_634 3 + 394410 394883 . 1 474 0 -chrII 394410 394884 HC_gene_0284_tx_635 4 + 394410 394884 . 1 475 0 -chrII 394410 394885 HC_gene_0284_tx_636 3 + 394410 394885 . 1 476 0 -chrII 394410 394886 HC_gene_0284_tx_637 2 + 394410 394886 . 1 477 0 -chrII 394410 394888 HC_gene_0284_tx_638 1 + 394410 394888 . 1 479 0 -chrII 394410 394890 HC_gene_0284_tx_639 5 + 394410 394890 . 1 481 0 -chrII 394410 394891 HC_gene_0284_tx_640 12 + 394410 394891 . 1 482 0 -chrII 394410 394892 HC_gene_0284_tx_641 1 + 394410 394892 . 1 483 0 -chrII 394410 394893 HC_gene_0284_tx_642 2 + 394410 394893 . 1 484 0 -chrII 394410 394894 HC_gene_0284_tx_643 1 + 394410 394894 . 1 485 0 -chrII 394410 394895 HC_gene_0284_tx_644 4 + 394410 394895 . 1 486 0 -chrII 394410 394898 HC_gene_0284_tx_645 2 + 394410 394898 . 1 489 0 -chrII 394410 394899 HC_gene_0284_tx_646 1 + 394410 394899 . 1 490 0 -chrII 394410 394900 HC_gene_0284_tx_647 2 + 394410 394900 . 1 491 0 -chrII 394410 394901 HC_gene_0284_tx_648 6 + 394410 394901 . 1 492 0 -chrII 394410 394902 HC_gene_0284_tx_649 1 + 394410 394902 . 1 493 0 -chrII 394410 394904 HC_gene_0284_tx_650 1 + 394410 394904 . 1 495 0 -chrII 394410 394905 HC_gene_0284_tx_651 2 + 394410 394905 . 1 496 0 -chrII 394410 394906 HC_gene_0284_tx_652 2 + 394410 394906 . 1 497 0 -chrII 394410 394909 HC_gene_0284_tx_653 5 + 394410 394909 . 1 500 0 -chrII 394410 394910 HC_gene_0284_tx_654 1 + 394410 394910 . 1 501 0 -chrII 394410 394912 HC_gene_0284_tx_655 3 + 394410 394912 . 1 503 0 -chrII 394410 394913 HC_gene_0284_tx_656 2 + 394410 394913 . 1 504 0 -chrII 394410 394917 HC_gene_0284_tx_657 1 + 394410 394917 . 1 508 0 -chrII 394410 394918 HC_gene_0284_tx_658 1 + 394410 394918 . 1 509 0 -chrII 394410 394920 HC_gene_0284_tx_659 1 + 394410 394920 . 1 511 0 -chrII 394410 394922 HC_gene_0284_tx_660 4 + 394410 394922 . 1 513 0 -chrII 394410 394927 HC_gene_0284_tx_661 1 + 394410 394927 . 1 518 0 -chrII 394410 394928 HC_gene_0284_tx_662 1 + 394410 394928 . 1 519 0 -chrII 394410 394929 HC_gene_0284_tx_663 1 + 394410 394929 . 1 520 0 -chrII 394410 394932 HC_gene_0284_tx_664 1 + 394410 394932 . 1 523 0 -chrII 394410 394935 HC_gene_0284_tx_665 1 + 394410 394935 . 1 526 0 -chrII 394410 394938 HC_gene_0284_tx_666 2 + 394410 394938 . 1 529 0 -chrII 394410 394948 HC_gene_0284_tx_667 2 + 394410 394948 . 1 539 0 -chrII 394410 394949 HC_gene_0284_tx_668 1 + 394410 394949 . 1 540 0 -chrII 394410 394953 HC_gene_0284_tx_669 2 + 394410 394953 . 1 544 0 -chrII 394410 394959 HC_gene_0284_tx_670 1 + 394410 394959 . 1 550 0 -chrII 394410 394960 HC_gene_0284_tx_671 1 + 394410 394960 . 1 551 0 -chrII 394410 394961 HC_gene_0284_tx_672 2 + 394410 394961 . 1 552 0 -chrII 394410 394962 HC_gene_0284_tx_673 1 + 394410 394962 . 1 553 0 -chrII 394410 394963 HC_gene_0284_tx_674 1 + 394410 394963 . 1 554 0 -chrII 394410 394964 HC_gene_0284_tx_675 2 + 394410 394964 . 1 555 0 -chrII 394410 394966 HC_gene_0284_tx_676 3 + 394410 394966 . 1 557 0 -chrII 394410 394967 HC_gene_0284_tx_677 1 + 394410 394967 . 1 558 0 -chrII 394410 394971 HC_gene_0284_tx_678 1 + 394410 394971 . 1 562 0 -chrII 394410 394974 HC_gene_0284_tx_679 1 + 394410 394974 . 1 565 0 -chrII 394410 394975 HC_gene_0284_tx_680 4 + 394410 394975 . 1 566 0 -chrII 394410 394976 HC_gene_0284_tx_681 2 + 394410 394976 . 1 567 0 -chrII 394410 394984 HC_gene_0284_tx_682 1 + 394410 394984 . 1 575 0 -chrII 394410 394990 HC_gene_0284_tx_683 1 + 394410 394990 . 1 581 0 -chrII 394410 394999 HC_gene_0284_tx_684 1 + 394410 394999 . 1 590 0 -chrII 394410 395000 HC_gene_0284_tx_685 1 + 394410 395000 . 1 591 0 -chrII 394410 395002 HC_gene_0284_tx_686 2 + 394410 395002 . 1 593 0 -chrII 394410 395003 HC_gene_0284_tx_687 1 + 394410 395003 . 1 594 0 -chrII 394410 395008 HC_gene_0284_tx_688 1 + 394410 395008 . 1 599 0 -chrII 394410 395010 HC_gene_0284_tx_689 2 + 394410 395010 . 1 601 0 -chrII 394410 395012 HC_gene_0284_tx_690 2 + 394410 395012 . 1 603 0 -chrII 394410 395013 HC_gene_0284_tx_691 1 + 394410 395013 . 1 604 0 -chrII 394410 395016 HC_gene_0284_tx_692 3 + 394410 395016 . 1 607 0 -chrII 394410 395017 HC_gene_0284_tx_693 1 + 394410 395017 . 1 608 0 -chrII 394410 395021 HC_gene_0284_tx_694 7 + 394410 395021 . 1 612 0 -chrII 394410 395249 HC_gene_0284_tx_602 290 + 394410 395249 . 1 840 0 -chrII 394410 395249 HC_gene_0284_tx_603 1 + 394410 395249 . 2 223,445 0,395 -chrII 394410 395249 HC_gene_0284_tx_604 1 + 394410 395249 . 2 379,409 0,431 -chrII 394410 395380 HC_gene_0284_tx_605 21 + 394410 395380 . 1 971 0 -chrII 394512 394799 HC_gene_0284_tx_695 1 + 394512 394799 . 1 288 0 -chrII 394512 394800 HC_gene_0284_tx_696 1 + 394512 394800 . 1 289 0 -chrII 394512 394811 HC_gene_0284_tx_697 1 + 394512 394811 . 1 300 0 -chrII 394512 394839 HC_gene_0284_tx_698 1 + 394512 394839 . 1 328 0 -chrII 394512 394864 HC_gene_0284_tx_699 1 + 394512 394864 . 1 353 0 -chrII 394512 394869 HC_gene_0284_tx_700 1 + 394512 394869 . 1 358 0 -chrII 394512 394873 HC_gene_0284_tx_701 2 + 394512 394873 . 1 362 0 -chrII 394512 394875 HC_gene_0284_tx_702 1 + 394512 394875 . 1 364 0 -chrII 394512 394878 HC_gene_0284_tx_703 1 + 394512 394878 . 1 367 0 -chrII 394512 394880 HC_gene_0284_tx_704 3 + 394512 394880 . 1 369 0 -chrII 394512 394881 HC_gene_0284_tx_705 2 + 394512 394881 . 1 370 0 -chrII 394512 394882 HC_gene_0284_tx_706 7 + 394512 394882 . 1 371 0 -chrII 394512 394883 HC_gene_0284_tx_707 2 + 394512 394883 . 1 372 0 -chrII 394512 394884 HC_gene_0284_tx_708 4 + 394512 394884 . 1 373 0 -chrII 394512 394885 HC_gene_0284_tx_709 1 + 394512 394885 . 1 374 0 -chrII 394512 394886 HC_gene_0284_tx_710 1 + 394512 394886 . 1 375 0 -chrII 394512 394887 HC_gene_0284_tx_711 1 + 394512 394887 . 1 376 0 -chrII 394512 394888 HC_gene_0284_tx_712 2 + 394512 394888 . 1 377 0 -chrII 394512 394891 HC_gene_0284_tx_713 10 + 394512 394891 . 1 380 0 -chrII 394512 394898 HC_gene_0284_tx_714 1 + 394512 394898 . 1 387 0 -chrII 394512 394901 HC_gene_0284_tx_715 2 + 394512 394901 . 1 390 0 -chrII 394512 394905 HC_gene_0284_tx_716 3 + 394512 394905 . 1 394 0 -chrII 394512 394906 HC_gene_0284_tx_717 1 + 394512 394906 . 1 395 0 -chrII 394512 394908 HC_gene_0284_tx_718 2 + 394512 394908 . 1 397 0 -chrII 394512 394909 HC_gene_0284_tx_719 1 + 394512 394909 . 1 398 0 -chrII 394512 394911 HC_gene_0284_tx_720 1 + 394512 394911 . 1 400 0 -chrII 394512 394918 HC_gene_0284_tx_721 1 + 394512 394918 . 1 407 0 -chrII 394512 394928 HC_gene_0284_tx_722 1 + 394512 394928 . 1 417 0 -chrII 394512 394931 HC_gene_0284_tx_723 1 + 394512 394931 . 1 420 0 -chrII 394512 394942 HC_gene_0284_tx_724 1 + 394512 394942 . 1 431 0 -chrII 394512 394945 HC_gene_0284_tx_725 1 + 394512 394945 . 1 434 0 -chrII 394512 394947 HC_gene_0284_tx_726 1 + 394512 394947 . 1 436 0 -chrII 394512 394953 HC_gene_0284_tx_727 1 + 394512 394953 . 1 442 0 -chrII 394512 394956 HC_gene_0284_tx_728 1 + 394512 394956 . 1 445 0 -chrII 394512 394961 HC_gene_0284_tx_729 1 + 394512 394961 . 1 450 0 -chrII 394512 394967 HC_gene_0284_tx_730 1 + 394512 394967 . 1 456 0 -chrII 394512 394975 HC_gene_0284_tx_731 1 + 394512 394975 . 1 464 0 -chrII 394512 395001 HC_gene_0284_tx_732 1 + 394512 395001 . 1 490 0 -chrII 394512 395007 HC_gene_0284_tx_733 1 + 394512 395007 . 1 496 0 -chrII 394512 395015 HC_gene_0284_tx_734 1 + 394512 395015 . 1 504 0 -chrII 394512 395016 HC_gene_0284_tx_735 2 + 394512 395016 . 1 505 0 -chrII 394512 395017 HC_gene_0284_tx_736 1 + 394512 395017 . 1 506 0 -chrII 394512 395021 HC_gene_0284_tx_737 1 + 394512 395021 . 1 510 0 -chrII 394512 395249 HC_gene_0284_tx_606 141 + 394512 395249 . 1 738 0 -chrII 394512 395380 HC_gene_0284_tx_607 10 + 394512 395380 . 1 869 0 -chrII 394708 394853 HC_gene_0284_tx_738 1 + 394708 394853 . 1 146 0 -chrII 394708 394882 HC_gene_0284_tx_739 1 + 394708 394882 . 1 175 0 -chrII 394708 394883 HC_gene_0284_tx_740 2 + 394708 394883 . 1 176 0 -chrII 394708 394885 HC_gene_0284_tx_741 1 + 394708 394885 . 1 178 0 -chrII 394708 394888 HC_gene_0284_tx_742 1 + 394708 394888 . 1 181 0 -chrII 394708 394891 HC_gene_0284_tx_743 1 + 394708 394891 . 1 184 0 -chrII 394708 394900 HC_gene_0284_tx_744 1 + 394708 394900 . 1 193 0 -chrII 394708 394937 HC_gene_0284_tx_745 1 + 394708 394937 . 1 230 0 -chrII 394708 394952 HC_gene_0284_tx_746 2 + 394708 394952 . 1 245 0 -chrII 394708 394959 HC_gene_0284_tx_747 1 + 394708 394959 . 1 252 0 -chrII 394708 394966 HC_gene_0284_tx_748 1 + 394708 394966 . 1 259 0 -chrII 394708 394970 HC_gene_0284_tx_749 1 + 394708 394970 . 1 263 0 -chrII 394708 394971 HC_gene_0284_tx_750 1 + 394708 394971 . 1 264 0 -chrII 394708 394973 HC_gene_0284_tx_751 1 + 394708 394973 . 1 266 0 -chrII 394708 394988 HC_gene_0284_tx_752 1 + 394708 394988 . 1 281 0 -chrII 394708 395000 HC_gene_0284_tx_753 2 + 394708 395000 . 1 293 0 -chrII 394708 395001 HC_gene_0284_tx_754 3 + 394708 395001 . 1 294 0 -chrII 394708 395005 HC_gene_0284_tx_755 1 + 394708 395005 . 1 298 0 -chrII 394708 395006 HC_gene_0284_tx_756 4 + 394708 395006 . 1 299 0 -chrII 394708 395007 HC_gene_0284_tx_757 2 + 394708 395007 . 1 300 0 -chrII 394708 395008 HC_gene_0284_tx_758 1 + 394708 395008 . 1 301 0 -chrII 394708 395011 HC_gene_0284_tx_759 2 + 394708 395011 . 1 304 0 -chrII 394708 395013 HC_gene_0284_tx_760 1 + 394708 395013 . 1 306 0 -chrII 394708 395014 HC_gene_0284_tx_761 3 + 394708 395014 . 1 307 0 -chrII 394708 395015 HC_gene_0284_tx_762 4 + 394708 395015 . 1 308 0 -chrII 394708 395016 HC_gene_0284_tx_763 3 + 394708 395016 . 1 309 0 -chrII 394708 395019 HC_gene_0284_tx_764 1 + 394708 395019 . 1 312 0 -chrII 394708 395021 HC_gene_0284_tx_765 6 + 394708 395021 . 1 314 0 -chrII 394708 395022 HC_gene_0284_tx_766 1 + 394708 395022 . 1 315 0 -chrII 394708 395249 HC_gene_0284_tx_767 192 + 394708 395249 . 1 542 0 -chrII 394708 395380 HC_gene_0284_tx_768 10 + 394708 395380 . 1 673 0 -chrII 395095 396984 HC_gene_0611_tx_1 1 - 395095 396984 . 1 1890 0 -chrII 395095 398303 HC_gene_0611_tx_3 3 - 395095 398303 . 1 3209 0 -chrII 395152 395779 HC_gene_0611_tx_8 1 - 395152 395779 . 1 628 0 -chrII 395152 395883 HC_gene_0611_tx_9 1 - 395152 395883 . 1 732 0 -chrII 395152 396139 HC_gene_0611_tx_13 1 - 395152 396139 . 1 988 0 -chrII 395152 397493 HC_gene_0611_tx_18 1 - 395152 397493 . 1 2342 0 -chrII 395152 398303 HC_gene_0611_tx_4 1 - 395152 398303 . 1 3152 0 -chrII 395226 395779 HC_gene_0611_tx_10 4 - 395226 395779 . 1 554 0 -chrII 395226 396139 HC_gene_0611_tx_14 1 - 395226 396139 . 1 914 0 -chrII 395226 396239 HC_gene_0611_tx_15 6 - 395226 396239 . 1 1014 0 -chrII 395226 398303 HC_gene_0611_tx_5 1 - 395226 398303 . 1 3078 0 -chrII 395298 395779 HC_gene_0611_tx_11 57 - 395298 395779 . 1 482 0 -chrII 395298 395883 HC_gene_0611_tx_12 26 - 395298 395883 . 1 586 0 -chrII 395298 396139 HC_gene_0611_tx_16 24 - 395298 396139 . 1 842 0 -chrII 395298 396239 HC_gene_0611_tx_17 19 - 395298 396239 . 1 942 0 -chrII 395298 396549 HC_gene_0611_tx_21 6 - 395298 396549 . 1 1252 0 -chrII 395298 396984 HC_gene_0611_tx_2 7 - 395298 396984 . 1 1687 0 -chrII 395298 397413 HC_gene_0611_tx_19 3 - 395298 397413 . 1 2116 0 -chrII 395298 397493 HC_gene_0611_tx_20 7 - 395298 397493 . 1 2196 0 -chrII 395298 398303 HC_gene_0611_tx_6 39 - 395298 398303 . 1 3006 0 -chrII 395298 398303 HC_gene_0611_tx_7 1 - 395298 398303 . 2 2458,179 0,2827 -chrII 398467 398935 HC_gene_0612_tx_1 10 - 398467 398935 . 1 469 0 -chrII 398467 399090 HC_gene_0612_tx_2 17 - 398467 399090 . 1 624 0 -chrII 398467 399448 HC_gene_0612_tx_3 12 - 398467 399448 . 1 982 0 -chrII 398467 399786 HC_gene_0612_tx_4 5 - 398467 399786 . 1 1320 0 -chrII 398467 400504 HC_gene_0612_tx_5 1 - 398467 400504 . 1 2038 0 -chrII 398467 400623 HC_gene_0612_tx_6 4 - 398467 400623 . 1 2157 0 -chrII 398467 400623 HC_gene_0612_tx_7 1 - 398467 400623 . 2 931,1111 0,1046 -chrII 398467 400917 HC_gene_0612_tx_8 43 - 398467 400917 . 1 2451 0 -chrII 398467 400917 HC_gene_0612_tx_9 1 - 398467 400917 . 2 1685,686 0,1765 -chrII 398467 400917 HC_gene_0612_tx_10 1 - 398467 400917 . 2 970,1405 0,1046 -chrII 398467 400917 HC_gene_0612_tx_11 1 - 398467 400917 . 3 987,1056,125 0,1073,2326 -chrII 398550 401233 LC_gene_0285_tx_1 1 + 398550 401233 . 2 336,2287 0,397 -chrII 401126 402215 HC_gene_0613_tx_1 4 - 401126 402215 . 1 1090 0 -chrII 401126 402658 HC_gene_0613_tx_2 3 - 401126 402658 . 1 1533 0 -chrII 401126 402953 HC_gene_0613_tx_3 4 - 401126 402953 . 1 1828 0 -chrII 401126 403372 HC_gene_0613_tx_4 3 - 401126 403372 . 1 2247 0 -chrII 401126 403522 HC_gene_0613_tx_5 1 - 401126 403522 . 1 2397 0 -chrII 401126 403663 HC_gene_0613_tx_6 1 - 401126 403663 . 1 2538 0 -chrII 401126 405398 HC_gene_0613_tx_7 1 - 401126 405398 . 1 4273 0 -chrII 406111 406267 HC_gene_0614_tx_1 2 - 406111 406267 . 1 157 0 -chrII 406111 406331 HC_gene_0614_tx_2 1 - 406111 406331 . 1 221 0 -chrII 406115 406579 HC_gene_0286_tx_1 6 + 406115 406579 . 1 465 0 -chrII 406172 406331 HC_gene_0614_tx_3 1 - 406172 406331 . 1 160 0 -chrII 406196 406579 HC_gene_0286_tx_2 1 + 406196 406579 . 1 384 0 -chrII 406459 406827 HC_gene_0615_tx_1 166 - 406459 406827 . 1 369 0 -chrII 406459 406992 HC_gene_0615_tx_2 535 - 406459 406992 . 1 534 0 -chrII 406459 406992 HC_gene_0615_tx_3 1 - 406459 406992 . 2 36,434 0,100 -chrII 406459 406992 HC_gene_0615_tx_4 1 - 406459 406992 . 2 73,374 0,160 -chrII 406459 406992 HC_gene_0615_tx_5 1 - 406459 406992 . 2 378,78 0,456 -chrII 406459 407246 HC_gene_0615_tx_6 650 - 406459 407246 . 2 569,124 0,664 -chrII 406459 407246 HC_gene_0615_tx_7 3 - 406459 407246 . 2 561,116 0,672 -chrII 406459 407246 HC_gene_0615_tx_8 12 - 406459 407246 . 1 788 0 -chrII 406459 407246 HC_gene_0615_tx_9 20 - 406459 407246 . 2 557,130 0,658 -chrII 406459 407246 HC_gene_0615_tx_10 1 - 406459 407246 . 2 584,99 0,689 -chrII 406459 407246 HC_gene_0615_tx_11 12 - 406459 407246 . 2 561,130 0,658 -chrII 406459 407246 HC_gene_0615_tx_12 1 - 406459 407246 . 2 575,124 0,664 -chrII 406459 407246 HC_gene_0615_tx_13 4 - 406459 407246 . 2 572,116 0,672 -chrII 406459 407246 HC_gene_0615_tx_14 1 - 406459 407246 . 2 537,124 0,664 -chrII 406459 407246 HC_gene_0615_tx_15 1 - 406459 407246 . 2 546,124 0,664 -chrII 406459 407246 HC_gene_0615_tx_16 1 - 406459 407246 . 2 584,116 0,672 -chrII 406459 407246 HC_gene_0615_tx_17 4 - 406459 407246 . 2 569,111 0,677 -chrII 406459 407246 HC_gene_0615_tx_18 1 - 406459 407246 . 2 549,130 0,658 -chrII 406459 407246 HC_gene_0615_tx_19 1 - 406459 407246 . 2 569,93 0,695 -chrII 406459 407246 HC_gene_0615_tx_20 1 - 406459 407246 . 2 446,157 0,631 -chrII 406459 407246 HC_gene_0615_tx_21 1 - 406459 407246 . 2 249,124 0,664 -chrII 406459 407246 HC_gene_0615_tx_22 1 - 406459 407246 . 2 546,135 0,653 -chrII 406459 407246 HC_gene_0615_tx_23 1 - 406459 407246 . 2 264,124 0,664 -chrII 406459 407246 HC_gene_0615_tx_24 1 - 406459 407246 . 3 58,459,124 0,110,664 -chrII 406459 407246 HC_gene_0615_tx_25 1 - 406459 407246 . 2 433,130 0,658 -chrII 406459 407246 HC_gene_0615_tx_26 2 - 406459 407246 . 2 561,107 0,681 -chrII 406459 407246 HC_gene_0615_tx_27 1 - 406459 407246 . 2 597,130 0,658 -chrII 406459 407246 HC_gene_0615_tx_28 1 - 406459 407246 . 2 420,87 0,701 -chrII 406459 407246 HC_gene_0615_tx_29 1 - 406459 407246 . 3 73,433,116 0,151,672 -chrII 407362 407988 HC_gene_0287_tx_1 1 + 407362 407988 . 1 627 0 -chrII 407573 407988 HC_gene_0288_tx_1 1 + 407573 407988 . 1 416 0 -chrII 407573 408081 HC_gene_0288_tx_2 1 + 407573 408081 . 1 509 0 -chrII 408078 408530 MC_gene_0616_tx_1 1 - 408078 408530 . 1 453 0 -chrII 408134 409103 MC_gene_0289_tx_1 1 + 408134 409103 . 1 970 0 -chrII 409122 410705 HC_gene_0290_tx_1 35 + 409122 410705 . 1 1584 0 -chrII 409122 410705 HC_gene_0290_tx_2 1 + 409122 410705 . 2 814,710 0,874 -chrII 409122 410705 HC_gene_0290_tx_3 1 + 409122 410705 . 3 182,872,190 0,447,1394 -chrII 409122 410705 HC_gene_0290_tx_4 1 + 409122 410705 . 2 912,601 0,983 -chrII 409122 410705 HC_gene_0290_tx_5 1 + 409122 410705 . 2 734,810 0,774 -chrII 409398 410705 HC_gene_0290_tx_6 5 + 409398 410705 . 1 1308 0 -chrII 409398 410705 HC_gene_0290_tx_7 1 + 409398 410705 . 2 581,567 0,741 -chrII 410163 410705 HC_gene_0290_tx_8 22 + 410163 410705 . 1 543 0 -chrII 410602 410946 MC_gene_0617_tx_1 1 - 410602 410946 . 1 345 0 -chrII 411039 414143 HC_gene_0291_tx_1 1 + 411039 414143 . 2 1869,1134 0,1971 -chrII 411039 414143 HC_gene_0291_tx_2 32 + 411039 414143 . 1 3105 0 -chrII 411039 414143 HC_gene_0291_tx_3 1 + 411039 414143 . 2 192,2841 0,264 -chrII 411039 414143 HC_gene_0291_tx_4 1 + 411039 414143 . 2 1899,1137 0,1968 -chrII 411039 414143 HC_gene_0291_tx_5 1 + 411039 414143 . 2 1098,1940 0,1165 -chrII 411039 414143 HC_gene_0291_tx_6 1 + 411039 414143 . 2 2604,440 0,2665 -chrII 411039 414143 HC_gene_0291_tx_7 1 + 411039 414143 . 2 1687,1312 0,1793 -chrII 411039 414143 HC_gene_0291_tx_8 1 + 411039 414143 . 2 2940,33 0,3072 -chrII 411039 414207 HC_gene_0291_tx_9 1 + 411039 414207 . 1 3169 0 -chrII 411279 414143 HC_gene_0291_tx_10 2 + 411279 414143 . 1 2865 0 -chrII 411558 414143 HC_gene_0291_tx_11 3 + 411558 414143 . 1 2586 0 -chrII 412146 414143 HC_gene_0291_tx_12 8 + 412146 414143 . 1 1998 0 -chrII 412146 414143 HC_gene_0291_tx_13 1 + 412146 414143 . 2 820,1049 0,949 -chrII 412469 414143 HC_gene_0291_tx_14 15 + 412469 414143 . 1 1675 0 -chrII 413377 413974 HC_gene_0291_tx_15 1 + 413377 413974 . 1 598 0 -chrII 413377 414143 HC_gene_0291_tx_16 26 + 413377 414143 . 1 767 0 -chrII 413377 414207 HC_gene_0291_tx_17 4 + 413377 414207 . 1 831 0 -chrII 413684 414143 HC_gene_0291_tx_18 25 + 413684 414143 . 1 460 0 -chrII 413684 414207 HC_gene_0291_tx_19 3 + 413684 414207 . 1 524 0 -chrII 414062 414544 HC_gene_0618_tx_1 887 - 414062 414544 . 1 483 0 -chrII 414062 414765 HC_gene_0618_tx_2 1945 - 414062 414765 . 1 704 0 -chrII 414824 415280 HC_gene_0619_tx_1 6 - 414824 415280 . 1 457 0 -chrII 414824 415494 HC_gene_0619_tx_2 2 - 414824 415494 . 1 671 0 -chrII 415886 417082 HC_gene_0292_tx_1 1 + 415886 417082 . 2 33,1092 0,105 -chrII 415907 417082 HC_gene_0292_tx_2 31 + 415907 417082 . 1 1176 0 -chrII 415907 417082 HC_gene_0292_tx_3 1 + 415907 417082 . 2 272,861 0,315 -chrII 416194 417082 HC_gene_0292_tx_4 6 + 416194 417082 . 1 889 0 -chrII 417005 418081 HC_gene_0620_tx_1 1 - 417005 418081 . 1 1077 0 -chrII 418374 418692 HC_gene_0293_tx_1 3 + 418374 418692 . 1 319 0 -chrII 418533 418834 HC_gene_0621_tx_1 86 - 418533 418834 . 1 302 0 -chrII 418533 419194 HC_gene_0621_tx_2 358 - 418533 419194 . 1 662 0 -chrII 420068 420506 HC_gene_0622_tx_1 23 - 420068 420506 . 1 439 0 -chrII 420068 420622 HC_gene_0622_tx_2 43 - 420068 420622 . 1 555 0 -chrII 420068 420708 HC_gene_0622_tx_3 8 - 420068 420708 . 1 641 0 -chrII 420068 420779 HC_gene_0622_tx_4 25 - 420068 420779 . 1 712 0 -chrII 420068 420839 HC_gene_0622_tx_5 22 - 420068 420839 . 1 772 0 -chrII 420068 421318 HC_gene_0622_tx_6 19 - 420068 421318 . 1 1251 0 -chrII 420068 421423 HC_gene_0622_tx_7 17 - 420068 421423 . 1 1356 0 -chrII 420068 421745 HC_gene_0622_tx_8 10 - 420068 421745 . 1 1678 0 -chrII 420068 422067 HC_gene_0622_tx_9 10 - 420068 422067 . 1 2000 0 -chrII 420068 422363 HC_gene_0622_tx_10 10 - 420068 422363 . 1 2296 0 -chrII 420120 420418 MC_gene_0294_tx_1 1 + 420120 420418 . 1 299 0 -chrII 422555 423348 HC_gene_0623_tx_1 1 - 422555 423348 . 1 794 0 -chrII 423491 423701 MC_gene_0295_tx_1 1 + 423491 423701 . 1 211 0 -chrII 423753 424885 HC_gene_0296_tx_1 39 + 423753 424885 . 1 1133 0 -chrII 424877 425807 HC_gene_0624_tx_1 224 - 424877 425807 . 1 931 0 -chrII 425081 426124 LC_gene_0297_tx_1 1 + 425081 426124 . 1 1044 0 -chrII 426031 426296 HC_gene_0625_tx_1 18 - 426031 426296 . 1 266 0 -chrII 426031 426402 HC_gene_0625_tx_2 116 - 426031 426402 . 1 372 0 -chrII 426454 426900 HC_gene_0626_tx_1 7 - 426454 426900 . 1 447 0 -chrII 427053 427526 HC_gene_0627_tx_1 100 - 427053 427526 . 1 474 0 -chrII 427133 427728 HC_gene_0298_tx_1 3 + 427133 427728 . 1 596 0 -chrII 427646 428005 HC_gene_0628_tx_1 71 - 427646 428005 . 1 360 0 -chrII 427646 428290 HC_gene_0628_tx_2 33 - 427646 428290 . 1 645 0 -chrII 427646 428446 HC_gene_0628_tx_3 32 - 427646 428446 . 1 801 0 -chrII 427646 429116 HC_gene_0628_tx_4 247 - 427646 429116 . 1 1471 0 -chrII 427846 429595 MC_gene_0299_tx_1 1 + 427846 429595 . 1 1750 0 -chrII 429489 429855 HC_gene_0629_tx_1 3 - 429489 429855 . 1 367 0 -chrII 429489 430053 HC_gene_0629_tx_2 3 - 429489 430053 . 1 565 0 -chrII 429489 430105 HC_gene_0629_tx_3 2 - 429489 430105 . 1 617 0 -chrII 429489 430210 HC_gene_0629_tx_4 2 - 429489 430210 . 1 722 0 -chrII 429489 430297 HC_gene_0629_tx_5 2 - 429489 430297 . 1 809 0 -chrII 429489 430795 HC_gene_0629_tx_6 1 - 429489 430795 . 1 1307 0 -chrII 429489 430999 HC_gene_0629_tx_7 1 - 429489 430999 . 1 1511 0 -chrII 429489 431224 HC_gene_0629_tx_8 1 - 429489 431224 . 1 1736 0 -chrII 429489 431822 HC_gene_0629_tx_9 2 - 429489 431822 . 1 2334 0 -chrII 429565 431271 HC_gene_0300_tx_1 1 + 429565 431271 . 1 1707 0 -chrII 429565 431689 HC_gene_0300_tx_2 13 + 429565 431689 . 1 2125 0 -chrII 429565 431689 HC_gene_0300_tx_3 1 + 429565 431689 . 2 777,810 0,1315 -chrII 431969 434404 HC_gene_0301_tx_1 11 + 431969 434404 . 1 2436 0 -chrII 433157 434404 HC_gene_0301_tx_2 2 + 433157 434404 . 1 1248 0 -chrII 434243 435739 HC_gene_0630_tx_1 1 - 434243 435739 . 1 1497 0 -chrII 434314 435739 HC_gene_0630_tx_2 44 - 434314 435739 . 1 1426 0 -chrII 434314 435739 HC_gene_0630_tx_3 1 - 434314 435739 . 2 433,878 0,548 -chrII 435939 436792 HC_gene_0302_tx_1 178 + 435939 436792 . 1 854 0 -chrII 436093 436792 HC_gene_0302_tx_2 16 + 436093 436792 . 1 700 0 -chrII 436919 438348 HC_gene_0303_tx_1 1 + 436919 438348 . 1 1430 0 -chrII 436919 441388 HC_gene_0303_tx_2 1 + 436919 441388 . 1 4470 0 -chrII 439370 441302 LC_gene_0631_tx_1 1 - 439370 441302 . 1 1933 0 -chrII 441516 443645 HC_gene_0304_tx_1 1 + 441516 443645 . 1 2130 0 -chrII 441516 443771 HC_gene_0304_tx_2 4 + 441516 443771 . 1 2256 0 -chrII 442924 444543 HC_gene_0632_tx_1 1 - 442924 444543 . 2 782,710 0,910 -chrII 442924 444718 HC_gene_0632_tx_2 1 - 442924 444718 . 2 782,885 0,910 -chrII 443005 444393 HC_gene_0632_tx_3 1 - 443005 444393 . 2 701,560 0,829 -chrII 443005 444543 HC_gene_0632_tx_4 1 - 443005 444543 . 1 1539 0 -chrII 443005 444718 HC_gene_0632_tx_5 4 - 443005 444718 . 2 701,885 0,829 -chrII 443005 444718 HC_gene_0632_tx_6 2 - 443005 444718 . 1 1714 0 -chrII 443005 444718 HC_gene_0632_tx_7 1 - 443005 444718 . 2 701,880 0,834 -chrII 443583 444393 HC_gene_0632_tx_8 1 - 443583 444393 . 1 811 0 -chrII 443583 444543 HC_gene_0632_tx_9 1 - 443583 444543 . 1 961 0 -chrII 443583 444718 HC_gene_0632_tx_10 3 - 443583 444718 . 1 1136 0 -chrII 443583 444718 HC_gene_0632_tx_11 3 - 443583 444718 . 2 123,885 0,251 -chrII 443745 444393 HC_gene_0632_tx_12 17 - 443745 444393 . 1 649 0 -chrII 443745 444543 HC_gene_0632_tx_13 25 - 443745 444543 . 1 799 0 -chrII 443745 444718 HC_gene_0632_tx_14 81 - 443745 444718 . 1 974 0 -chrII 444868 447402 HC_gene_0633_tx_1 3 - 444868 447402 . 1 2535 0 -chrII 444954 447402 HC_gene_0633_tx_2 10 - 444954 447402 . 1 2449 0 -chrII 444954 447402 HC_gene_0633_tx_3 1 - 444954 447402 . 3 949,744,332 0,1166,2117 -chrII 445037 445344 MC_gene_0305_tx_1 1 + 445037 445344 . 1 308 0 -chrII 447591 449365 HC_gene_0306_tx_1 12 + 447591 449365 . 1 1775 0 -chrII 447740 449365 HC_gene_0306_tx_2 5 + 447740 449365 . 1 1626 0 -chrII 449330 450286 LC_gene_0634_tx_1 1 - 449330 450286 . 1 957 0 -chrII 449606 450741 HC_gene_0307_tx_1 85 + 449606 450741 . 1 1136 0 -chrII 449606 450741 HC_gene_0307_tx_2 1 + 449606 450741 . 2 425,640 0,496 -chrII 449606 450741 HC_gene_0307_tx_3 1 + 449606 450741 . 2 502,461 0,675 -chrII 449606 450741 HC_gene_0307_tx_4 1 + 449606 450741 . 2 77,1013 0,123 -chrII 449606 450741 HC_gene_0307_tx_5 1 + 449606 450741 . 2 584,415 0,721 -chrII 449606 450741 HC_gene_0307_tx_6 1 + 449606 450741 . 2 607,461 0,675 -chrII 449606 451002 HC_gene_0307_tx_7 1 + 449606 451002 . 1 1397 0 -chrII 449606 451126 HC_gene_0307_tx_8 1 + 449606 451126 . 1 1521 0 -chrII 450058 450741 HC_gene_0307_tx_9 11 + 450058 450741 . 1 684 0 -chrII 450758 451458 HC_gene_0635_tx_1 28 - 450758 451458 . 1 701 0 -chrII 450758 451548 HC_gene_0635_tx_2 39 - 450758 451548 . 1 791 0 -chrII 450758 451548 HC_gene_0635_tx_3 1 - 450758 451548 . 2 401,300 0,491 -chrII 450758 451615 HC_gene_0635_tx_4 10 - 450758 451615 . 1 858 0 -chrII 450758 451724 HC_gene_0635_tx_5 60 - 450758 451724 . 1 967 0 -chrII 450758 451895 HC_gene_0635_tx_6 17 - 450758 451895 . 1 1138 0 -chrII 450758 452009 HC_gene_0635_tx_7 171 - 450758 452009 . 1 1252 0 -chrII 450758 452009 HC_gene_0635_tx_8 1 - 450758 452009 . 2 386,800 0,452 -chrII 450758 452009 HC_gene_0635_tx_9 1 - 450758 452009 . 2 27,761 0,491 -chrII 450758 452009 HC_gene_0635_tx_10 1 - 450758 452009 . 2 675,159 0,1093 -chrII 452621 453365 HC_gene_0308_tx_1 758 + 452621 453365 . 1 745 0 -chrII 452621 453483 HC_gene_0308_tx_2 12 + 452621 453483 . 1 863 0 -chrII 452621 453583 HC_gene_0308_tx_3 54 + 452621 453583 . 1 963 0 -chrII 452894 453365 HC_gene_0308_tx_4 169 + 452894 453365 . 1 472 0 -chrII 452894 453583 HC_gene_0308_tx_7 18 + 452894 453583 . 1 690 0 -chrII 452977 453365 HC_gene_0308_tx_5 76 + 452977 453365 . 1 389 0 -chrII 452977 453583 HC_gene_0308_tx_8 5 + 452977 453583 . 1 607 0 -chrII 453045 453365 HC_gene_0308_tx_6 76 + 453045 453365 . 1 321 0 -chrII 453045 453583 HC_gene_0308_tx_9 10 + 453045 453583 . 1 539 0 -chrII 453230 454552 HC_gene_0636_tx_1 6 - 453230 454552 . 1 1323 0 -chrII 453407 454017 HC_gene_0636_tx_4 1 - 453407 454017 . 1 611 0 -chrII 453407 454552 HC_gene_0636_tx_2 11 - 453407 454552 . 1 1146 0 -chrII 453407 454649 HC_gene_0636_tx_3 1 - 453407 454649 . 1 1243 0 -chrII 453601 453836 HC_gene_0309_tx_1 1 + 453601 453836 . 1 236 0 -chrII 453601 454771 HC_gene_0309_tx_2 13 + 453601 454771 . 1 1171 0 -chrII 454341 454771 HC_gene_0309_tx_3 2 + 454341 454771 . 1 431 0 -chrII 454781 457886 HC_gene_0310_tx_1 2 + 454781 457886 . 1 3106 0 -chrII 456365 457746 LC_gene_0637_tx_1 1 - 456365 457746 . 1 1382 0 -chrII 457723 457979 HC_gene_0638_tx_1 93 - 457723 457979 . 1 257 0 -chrII 457723 458249 HC_gene_0638_tx_2 46 - 457723 458249 . 1 527 0 -chrII 457723 458407 HC_gene_0638_tx_3 663 - 457723 458407 . 1 685 0 -chrII 458691 460323 HC_gene_0311_tx_1 8 + 458691 460323 . 1 1633 0 -chrII 458823 460323 HC_gene_0311_tx_2 31 + 458823 460323 . 1 1501 0 -chrII 458933 460323 HC_gene_0311_tx_3 3 + 458933 460323 . 1 1391 0 -chrII 459178 460323 HC_gene_0311_tx_4 8 + 459178 460323 . 1 1146 0 -chrII 460762 461153 MC_gene_0312_tx_1 1 + 460762 461153 . 1 392 0 -chrII 460924 461866 HC_gene_0639_tx_1 3 - 460924 461866 . 1 943 0 -chrII 461124 461551 HC_gene_0639_tx_2 43 - 461124 461551 . 1 428 0 -chrII 461124 461866 HC_gene_0639_tx_3 323 - 461124 461866 . 1 743 0 -chrII 462101 462747 HC_gene_0313_tx_1 35 + 462101 462747 . 2 329,248 0,399 -chrII 462101 462747 HC_gene_0313_tx_2 106 + 462101 462747 . 3 109,140,248 0,189,399 -chrII 462101 462747 HC_gene_0313_tx_3 2 + 462101 462747 . 3 109,160,248 0,169,399 -chrII 462101 462747 HC_gene_0313_tx_4 13 + 462101 462747 . 1 647 0 -chrII 462101 462747 HC_gene_0313_tx_5 4 + 462101 462747 . 2 109,458 0,189 -chrII 462101 462747 HC_gene_0313_tx_6 2 + 462101 462747 . 3 109,144,248 0,189,399 -chrII 462101 462747 HC_gene_0313_tx_7 1 + 462101 462747 . 3 109,141,248 0,169,399 -chrII 462101 462747 HC_gene_0313_tx_8 2 + 462101 462747 . 2 310,266 0,381 -chrII 462101 462747 HC_gene_0313_tx_9 1 + 462101 462747 . 2 310,248 0,399 -chrII 462611 463136 HC_gene_0640_tx_1 31 - 462611 463136 . 1 526 0 -chrII 462611 463305 HC_gene_0640_tx_2 12 - 462611 463305 . 1 695 0 -chrII 462611 463706 HC_gene_0640_tx_4 17 - 462611 463706 . 1 1096 0 -chrII 462611 463938 HC_gene_0640_tx_5 14 - 462611 463938 . 1 1328 0 -chrII 462611 464111 HC_gene_0640_tx_6 12 - 462611 464111 . 1 1501 0 -chrII 462611 465841 HC_gene_0640_tx_11 1 - 462611 465841 . 1 3231 0 -chrII 462611 465951 HC_gene_0640_tx_12 1 - 462611 465951 . 2 1431,1857 0,1484 -chrII 462611 465973 HC_gene_0640_tx_13 16 - 462611 465973 . 1 3363 0 -chrII 462611 466042 HC_gene_0640_tx_14 1 - 462611 466042 . 1 3432 0 -chrII 462735 463136 HC_gene_0640_tx_18 6 - 462735 463136 . 1 402 0 -chrII 462735 463305 HC_gene_0640_tx_3 2 - 462735 463305 . 1 571 0 -chrII 462735 463706 HC_gene_0640_tx_7 5 - 462735 463706 . 1 972 0 -chrII 462735 463938 HC_gene_0640_tx_8 3 - 462735 463938 . 1 1204 0 -chrII 462735 464111 HC_gene_0640_tx_9 1 - 462735 464111 . 2 505,769 0,608 -chrII 462735 464111 HC_gene_0640_tx_10 2 - 462735 464111 . 1 1377 0 -chrII 462735 465841 HC_gene_0640_tx_15 1 - 462735 465841 . 1 3107 0 -chrII 462735 465841 HC_gene_0640_tx_16 1 - 462735 465841 . 3 1138,1173,116 0,1526,2991 -chrII 462735 465973 HC_gene_0640_tx_17 2 - 462735 465973 . 1 3239 0 -chrII 467159 469661 HC_gene_0314_tx_1 26 + 467159 469661 . 1 2503 0 -chrII 467159 469791 HC_gene_0314_tx_2 1 + 467159 469791 . 1 2633 0 -chrII 469603 474044 HC_gene_0641_tx_1 1 - 469603 474044 . 1 4442 0 -chrII 469606 470414 HC_gene_0641_tx_22 3 - 469606 470414 . 1 809 0 -chrII 469606 471606 HC_gene_0641_tx_34 2 - 469606 471606 . 1 2001 0 -chrII 469606 474044 HC_gene_0641_tx_2 2 - 469606 474044 . 1 4439 0 -chrII 469608 473216 HC_gene_0641_tx_3 1 - 469608 473216 . 1 3609 0 -chrII 469608 474044 HC_gene_0641_tx_4 1 - 469608 474044 . 1 4437 0 -chrII 469609 470414 HC_gene_0641_tx_23 9 - 469609 470414 . 1 806 0 -chrII 469609 471606 HC_gene_0641_tx_35 2 - 469609 471606 . 1 1998 0 -chrII 469609 474044 HC_gene_0641_tx_5 5 - 469609 474044 . 1 4436 0 -chrII 469612 470414 HC_gene_0641_tx_24 1 - 469612 470414 . 1 803 0 -chrII 469612 473216 HC_gene_0641_tx_6 1 - 469612 473216 . 1 3605 0 -chrII 469613 474044 HC_gene_0641_tx_7 2 - 469613 474044 . 1 4432 0 -chrII 469613 474044 HC_gene_0641_tx_8 1 - 469613 474044 . 2 1641,2747 0,1685 -chrII 469614 470414 HC_gene_0641_tx_25 2 - 469614 470414 . 1 801 0 -chrII 469614 474044 HC_gene_0641_tx_9 1 - 469614 474044 . 1 4431 0 -chrII 469615 474044 HC_gene_0641_tx_10 1 - 469615 474044 . 1 4430 0 -chrII 469616 474044 HC_gene_0641_tx_11 2 - 469616 474044 . 1 4429 0 -chrII 469617 470414 HC_gene_0641_tx_26 1 - 469617 470414 . 1 798 0 -chrII 469618 470414 HC_gene_0641_tx_27 1 - 469618 470414 . 1 797 0 -chrII 469618 474044 HC_gene_0641_tx_12 1 - 469618 474044 . 1 4427 0 -chrII 469619 473216 HC_gene_0641_tx_13 1 - 469619 473216 . 1 3598 0 -chrII 469619 474044 HC_gene_0641_tx_14 2 - 469619 474044 . 1 4426 0 -chrII 469622 470414 HC_gene_0641_tx_28 1 - 469622 470414 . 1 793 0 -chrII 469622 474044 HC_gene_0641_tx_15 2 - 469622 474044 . 1 4423 0 -chrII 469623 470414 HC_gene_0641_tx_29 1 - 469623 470414 . 1 792 0 -chrII 469631 471606 HC_gene_0641_tx_36 1 - 469631 471606 . 2 1300,609 0,1367 -chrII 469631 474044 HC_gene_0641_tx_16 1 - 469631 474044 . 1 4414 0 -chrII 469633 470414 HC_gene_0641_tx_30 1 - 469633 470414 . 1 782 0 -chrII 469633 474044 HC_gene_0641_tx_17 1 - 469633 474044 . 1 4412 0 -chrII 469639 470414 HC_gene_0641_tx_31 2 - 469639 470414 . 1 776 0 -chrII 469639 471606 HC_gene_0641_tx_37 1 - 469639 471606 . 1 1968 0 -chrII 469639 474044 HC_gene_0641_tx_18 1 - 469639 474044 . 1 4406 0 -chrII 469641 470414 HC_gene_0641_tx_32 1 - 469641 470414 . 1 774 0 -chrII 469643 474044 HC_gene_0641_tx_19 1 - 469643 474044 . 1 4402 0 -chrII 469644 471606 HC_gene_0641_tx_38 1 - 469644 471606 . 1 1963 0 -chrII 469645 474044 HC_gene_0641_tx_20 1 - 469645 474044 . 1 4400 0 -chrII 469651 474044 HC_gene_0641_tx_21 1 - 469651 474044 . 1 4394 0 -chrII 469656 471606 HC_gene_0641_tx_39 1 - 469656 471606 . 1 1951 0 -chrII 469664 470414 HC_gene_0641_tx_33 1 - 469664 470414 . 1 751 0 -chrII 469825 470414 HC_gene_0641_tx_40 1 - 469825 470414 . 1 590 0 -chrII 474240 475341 LC_gene_0642_tx_1 1 - 474240 475341 . 1 1102 0 -chrII 474355 476554 MC_gene_0315_tx_1 1 + 474355 476554 . 1 2200 0 -chrII 475264 477008 MC_gene_0316_tx_1 1 + 475264 477008 . 1 1745 0 -chrII 476871 477191 MC_gene_0317_tx_1 1 + 476871 477191 . 1 321 0 -chrII 476879 477352 MC_gene_0643_tx_1 1 - 476879 477352 . 1 474 0 -chrII 477648 479143 HC_gene_0318_tx_1 4287 + 477648 479143 . 1 1496 0 -chrII 477648 479143 HC_gene_0318_tx_2 2 + 477648 479143 . 2 867,566 0,930 -chrII 477648 479143 HC_gene_0318_tx_3 2 + 477648 479143 . 2 825,632 0,864 -chrII 477648 479143 HC_gene_0318_tx_4 2 + 477648 479143 . 2 840,609 0,887 -chrII 477648 479143 HC_gene_0318_tx_5 2 + 477648 479143 . 2 844,591 0,905 -chrII 477648 479143 HC_gene_0318_tx_6 2 + 477648 479143 . 2 852,591 0,905 -chrII 477648 479209 HC_gene_0318_tx_7 2 + 477648 479209 . 1 1562 0 -chrII 478364 479143 HC_gene_0318_tx_8 243 + 478364 479143 . 1 780 0 -chrII 478436 479143 HC_gene_0318_tx_9 1077 + 478436 479143 . 1 708 0 -chrII 479300 480473 HC_gene_0319_tx_1 9 + 479300 480473 . 2 46,1039 0,135 -chrII 479300 480473 HC_gene_0319_tx_2 3 + 479300 480473 . 2 50,1039 0,135 -chrII 479300 480473 HC_gene_0319_tx_3 7 + 479300 480473 . 1 1174 0 -chrII 479730 480473 HC_gene_0319_tx_4 4 + 479730 480473 . 1 744 0 -chrII 480179 480994 HC_gene_0644_tx_1 1 - 480179 480994 . 1 816 0 -chrII 480368 480994 HC_gene_0644_tx_2 61 - 480368 480994 . 1 627 0 -chrII 481223 481764 HC_gene_0645_tx_1 148 - 481223 481764 . 1 542 0 -chrII 481223 481915 HC_gene_0645_tx_2 42 - 481223 481915 . 1 693 0 -chrII 481223 482214 HC_gene_0645_tx_3 66 - 481223 482214 . 1 992 0 -chrII 481223 482997 HC_gene_0645_tx_4 46 - 481223 482997 . 1 1775 0 -chrII 481223 482997 HC_gene_0645_tx_5 1 - 481223 482997 . 2 676,1041 0,734 -chrII 481223 482997 HC_gene_0645_tx_6 1 - 481223 482997 . 2 703,974 0,801 -chrII 481223 482997 HC_gene_0645_tx_7 1 - 481223 482997 . 2 1103,432 0,1343 -chrII 481223 483116 HC_gene_0645_tx_8 1 - 481223 483116 . 2 457,120 0,1774 -chrII 481223 483118 HC_gene_0645_tx_9 37 - 481223 483118 . 1 1896 0 -chrII 481223 483423 HC_gene_0645_tx_10 1 - 481223 483423 . 2 930,1218 0,983 -chrII 481223 483435 HC_gene_0645_tx_11 421 - 481223 483435 . 1 2213 0 -chrII 481223 483435 HC_gene_0645_tx_12 1 - 481223 483435 . 2 1040,1117 0,1096 -chrII 481223 483435 HC_gene_0645_tx_13 1 - 481223 483435 . 2 1148,697 0,1516 -chrII 481223 483435 HC_gene_0645_tx_14 1 - 481223 483435 . 2 1131,1023 0,1190 -chrII 481223 483435 HC_gene_0645_tx_15 1 - 481223 483435 . 2 704,1077 0,1136 -chrII 481223 483435 HC_gene_0645_tx_16 1 - 481223 483435 . 2 1061,1104 0,1109 -chrII 481223 483435 HC_gene_0645_tx_17 1 - 481223 483435 . 2 1214,870 0,1343 -chrII 481223 483435 HC_gene_0645_tx_18 1 - 481223 483435 . 2 1046,1043 0,1170 -chrII 481223 483435 HC_gene_0645_tx_19 1 - 481223 483435 . 2 1421,723 0,1490 -chrII 481223 483435 HC_gene_0645_tx_20 1 - 481223 483435 . 2 964,1137 0,1076 -chrII 481223 483435 HC_gene_0645_tx_21 2 - 481223 483435 . 2 1040,1057 0,1156 -chrII 481223 483435 HC_gene_0645_tx_22 1 - 481223 483435 . 2 996,1158 0,1055 -chrII 481223 483435 HC_gene_0645_tx_23 1 - 481223 483435 . 2 1026,1008 0,1205 -chrII 481223 483435 HC_gene_0645_tx_24 1 - 481223 483435 . 2 1250,804 0,1409 -chrII 481223 483435 HC_gene_0645_tx_25 1 - 481223 483435 . 2 1061,1081 0,1132 -chrII 481223 483435 HC_gene_0645_tx_26 1 - 481223 483435 . 2 733,1435 0,778 -chrII 481223 483435 HC_gene_0645_tx_27 1 - 481223 483435 . 2 1072,1077 0,1136 -chrII 481223 483435 HC_gene_0645_tx_28 1 - 481223 483435 . 2 1846,301 0,1912 -chrII 481223 483435 HC_gene_0645_tx_29 1 - 481223 483435 . 2 1061,1094 0,1119 -chrII 481223 483435 HC_gene_0645_tx_30 1 - 481223 483435 . 2 1968,102 0,2111 -chrII 481223 483435 HC_gene_0645_tx_31 1 - 481223 483435 . 2 1061,1071 0,1142 -chrII 481223 483435 HC_gene_0645_tx_32 1 - 481223 483435 . 2 1054,1035 0,1178 -chrII 483802 484093 MC_gene_0320_tx_1 1 + 483802 484093 . 1 292 0 -chrII 483803 484251 HC_gene_0646_tx_1 8 - 483803 484251 . 1 449 0 -chrII 483803 484307 HC_gene_0646_tx_2 10 - 483803 484307 . 1 505 0 -chrII 483803 484544 HC_gene_0646_tx_3 112 - 483803 484544 . 1 742 0 -chrII 483803 484544 HC_gene_0646_tx_4 1 - 483803 484544 . 2 33,650 0,92 -chrII 483803 484544 HC_gene_0646_tx_5 1 - 483803 484544 . 2 39,661 0,81 -chrII 483817 483910 MC_gene_0320_tx_2 1 + 483817 483910 . 1 94 0 -chrII 484149 484866 LC_gene_0321_tx_1 1 + 484149 484866 . 1 718 0 -chrII 484683 484876 HC_gene_0647_tx_1 2 - 484683 484876 . 1 194 0 -chrII 484683 486755 HC_gene_0647_tx_2 7 - 484683 486755 . 1 2073 0 -chrII 485940 486959 LC_gene_0322_tx_1 1 + 485940 486959 . 1 1020 0 -chrII 486945 488342 HC_gene_0648_tx_1 1 - 486945 488342 . 1 1398 0 -chrII 486945 488450 HC_gene_0648_tx_2 5 - 486945 488450 . 1 1506 0 -chrII 486945 488569 HC_gene_0648_tx_3 16 - 486945 488569 . 1 1625 0 -chrII 487062 488342 HC_gene_0648_tx_4 2 - 487062 488342 . 1 1281 0 -chrII 487062 488450 HC_gene_0648_tx_5 4 - 487062 488450 . 1 1389 0 -chrII 487062 488569 HC_gene_0648_tx_6 10 - 487062 488569 . 1 1508 0 -chrII 487062 488569 HC_gene_0648_tx_7 1 - 487062 488569 . 2 879,468 0,1040 -chrII 488672 489029 HC_gene_0323_tx_1 3 + 488672 489029 . 1 358 0 -chrII 488755 488874 HC_gene_0323_tx_2 1 + 488755 488874 . 1 120 0 -chrII 488755 489029 HC_gene_0323_tx_3 4 + 488755 489029 . 1 275 0 -chrII 488773 488975 HC_gene_0649_tx_1 2 - 488773 488975 . 1 203 0 -chrII 488773 489060 HC_gene_0649_tx_2 13 - 488773 489060 . 1 288 0 -chrII 488773 489114 HC_gene_0649_tx_3 10 - 488773 489114 . 1 342 0 -chrII 488773 489248 HC_gene_0649_tx_4 28 - 488773 489248 . 1 476 0 -chrII 488773 489438 HC_gene_0649_tx_5 24 - 488773 489438 . 1 666 0 -chrII 488773 489639 HC_gene_0649_tx_6 16 - 488773 489639 . 1 867 0 -chrII 488773 489776 HC_gene_0649_tx_7 14 - 488773 489776 . 1 1004 0 -chrII 488773 489848 HC_gene_0649_tx_8 8 - 488773 489848 . 1 1076 0 -chrII 488773 489931 HC_gene_0649_tx_9 2 - 488773 489931 . 1 1159 0 -chrII 488773 489993 HC_gene_0649_tx_10 4 - 488773 489993 . 1 1221 0 -chrII 488773 490058 HC_gene_0649_tx_11 7 - 488773 490058 . 1 1286 0 -chrII 488773 490208 HC_gene_0649_tx_12 1 - 488773 490208 . 2 249,861 0,575 -chrII 488773 490208 HC_gene_0649_tx_13 26 - 488773 490208 . 1 1436 0 -chrII 488773 490348 HC_gene_0649_tx_14 21 - 488773 490348 . 1 1576 0 -chrII 488773 490464 HC_gene_0649_tx_15 76 - 488773 490464 . 1 1692 0 -chrII 488773 490464 HC_gene_0649_tx_16 1 - 488773 490464 . 2 93,527 0,1165 -chrII 488773 490464 HC_gene_0649_tx_17 1 - 488773 490464 . 2 638,967 0,725 -chrII 488773 491064 HC_gene_0649_tx_18 1 - 488773 491064 . 1 2292 0 -chrII 490826 491202 HC_gene_0324_tx_1 352 + 490826 491202 . 1 377 0 -chrII 490826 491273 HC_gene_0324_tx_2 4 + 490826 491273 . 1 448 0 -chrII 491068 491354 HC_gene_0650_tx_1 12 - 491068 491354 . 1 287 0 -chrII 491068 491553 HC_gene_0650_tx_2 228 - 491068 491553 . 1 486 0 -chrII 491068 491756 HC_gene_0650_tx_3 114 - 491068 491756 . 1 689 0 -chrII 491068 491915 HC_gene_0650_tx_4 60 - 491068 491915 . 1 848 0 -chrII 491068 491915 HC_gene_0650_tx_5 1 - 491068 491915 . 2 69,693 0,155 -chrII 491068 492176 HC_gene_0650_tx_6 87 - 491068 492176 . 1 1109 0 -chrII 491068 492435 HC_gene_0650_tx_7 86 - 491068 492435 . 1 1368 0 -chrII 491068 492435 HC_gene_0650_tx_8 1 - 491068 492435 . 2 354,400 0,968 -chrII 491068 492528 HC_gene_0650_tx_9 1 - 491068 492528 . 2 724,205 0,1256 -chrII 491068 492528 HC_gene_0650_tx_10 73 - 491068 492528 . 1 1461 0 -chrII 491068 492528 HC_gene_0650_tx_11 1 - 491068 492528 . 2 73,1333 0,128 -chrII 491068 492528 HC_gene_0650_tx_12 1 - 491068 492528 . 2 694,505 0,956 -chrII 491068 492645 HC_gene_0650_tx_13 27 - 491068 492645 . 1 1578 0 -chrII 491068 492830 HC_gene_0650_tx_14 1 - 491068 492830 . 1 1763 0 -chrII 491068 492872 HC_gene_0650_tx_15 361 - 491068 492872 . 1 1805 0 -chrII 491068 492872 HC_gene_0650_tx_16 1 - 491068 492872 . 2 59,1650 0,155 -chrII 491068 492872 HC_gene_0650_tx_17 1 - 491068 492872 . 2 748,1008 0,797 -chrII 491068 492872 HC_gene_0650_tx_18 1 - 491068 492872 . 2 1171,206 0,1599 -chrII 491068 492872 HC_gene_0650_tx_19 1 - 491068 492872 . 2 766,988 0,817 -chrII 491068 492872 HC_gene_0650_tx_20 1 - 491068 492872 . 2 775,948 0,857 -chrII 491068 492872 HC_gene_0650_tx_21 1 - 491068 492872 . 2 1217,161 0,1644 -chrII 491068 492872 HC_gene_0650_tx_22 1 - 491068 492872 . 2 758,997 0,808 -chrII 491068 492872 HC_gene_0650_tx_23 1 - 491068 492872 . 2 797,948 0,857 -chrII 491068 492872 HC_gene_0650_tx_24 1 - 491068 492872 . 2 1151,192 0,1613 -chrII 491068 492872 HC_gene_0650_tx_25 1 - 491068 492872 . 2 1092,303 0,1502 -chrII 491068 492872 HC_gene_0650_tx_26 1 - 491068 492872 . 2 95,1600 0,205 -chrII 491068 492872 HC_gene_0650_tx_27 1 - 491068 492872 . 2 804,930 0,875 -chrII 491068 492872 HC_gene_0650_tx_28 1 - 491068 492872 . 2 1446,169 0,1636 -chrII 491068 492872 HC_gene_0650_tx_29 1 - 491068 492872 . 2 1244,212 0,1593 -chrII 491068 492872 HC_gene_0650_tx_30 1 - 491068 492872 . 2 1531,147 0,1658 -chrII 491068 492872 HC_gene_0650_tx_31 1 - 491068 492872 . 2 766,927 0,878 -chrII 491068 492872 HC_gene_0650_tx_32 1 - 491068 492872 . 2 1202,201 0,1604 -chrII 491068 492872 HC_gene_0650_tx_33 1 - 491068 492872 . 2 853,846 0,959 -chrII 492974 494193 HC_gene_0651_tx_1 9 - 492974 494193 . 1 1220 0 -chrII 493058 493385 HC_gene_0325_tx_1 2 + 493058 493385 . 1 328 0 -chrII 493315 494193 HC_gene_0651_tx_2 2 - 493315 494193 . 1 879 0 -chrII 494219 495022 HC_gene_0652_tx_1 11 - 494219 495022 . 1 804 0 -chrII 494219 495358 HC_gene_0652_tx_2 1 - 494219 495358 . 1 1140 0 -chrII 494219 495375 HC_gene_0652_tx_3 46 - 494219 495375 . 1 1157 0 -chrII 494219 495375 HC_gene_0652_tx_4 1 - 494219 495375 . 2 831,221 0,936 -chrII 495488 496711 HC_gene_0653_tx_1 7 - 495488 496711 . 1 1224 0 -chrII 495488 496899 HC_gene_0653_tx_2 41 - 495488 496899 . 1 1412 0 -chrII 495579 496308 MC_gene_0326_tx_1 1 + 495579 496308 . 1 730 0 -chrII 497132 499365 HC_gene_0327_tx_1 10 + 497132 499365 . 1 2234 0 -chrII 497132 499365 HC_gene_0327_tx_2 1 + 497132 499365 . 2 1122,1052 0,1182 -chrII 499347 499881 HC_gene_0654_tx_1 5 - 499347 499881 . 1 535 0 -chrII 499347 499942 HC_gene_0654_tx_2 2 - 499347 499942 . 1 596 0 -chrII 499347 500122 HC_gene_0654_tx_4 2 - 499347 500122 . 1 776 0 -chrII 499347 501595 HC_gene_0654_tx_5 3 - 499347 501595 . 1 2249 0 -chrII 499412 499881 HC_gene_0654_tx_3 1 - 499412 499881 . 1 470 0 -chrII 499412 501595 HC_gene_0654_tx_6 1 - 499412 501595 . 1 2184 0 -chrII 501384 501983 LC_gene_0328_tx_1 1 + 501384 501983 . 1 600 0 -chrII 501481 502660 HC_gene_0655_tx_1 1 - 501481 502660 . 1 1180 0 -chrII 501481 504408 HC_gene_0655_tx_4 5 - 501481 504408 . 1 2928 0 -chrII 501661 502660 HC_gene_0655_tx_2 2 - 501661 502660 . 1 1000 0 -chrII 501661 504408 HC_gene_0655_tx_5 4 - 501661 504408 . 1 2748 0 -chrII 501743 502660 HC_gene_0655_tx_3 1 - 501743 502660 . 1 918 0 -chrII 501749 504408 HC_gene_0655_tx_6 1 - 501749 504408 . 2 760,1849 0,811 -chrII 501749 504408 HC_gene_0655_tx_7 1 - 501749 504408 . 3 1370,75,193 0,2230,2467 -chrII 504777 505520 HC_gene_0329_tx_1 63 + 504777 505520 . 1 744 0 -chrII 504777 505584 HC_gene_0329_tx_2 1 + 504777 505584 . 1 808 0 -chrII 504895 505520 HC_gene_0329_tx_3 10 + 504895 505520 . 1 626 0 -chrII 505080 505520 HC_gene_0329_tx_4 13 + 505080 505520 . 1 441 0 -chrII 505186 505520 HC_gene_0329_tx_5 2 + 505186 505520 . 1 335 0 -chrII 505622 512974 HC_gene_0330_tx_1 1 + 505622 512974 . 1 7353 0 -chrII 510516 511521 MC_gene_0656_tx_1 1 - 510516 511521 . 1 1006 0 -chrII 511740 512267 LC_gene_0657_tx_1 1 - 511740 512267 . 1 528 0 -chrII 512981 513739 HC_gene_0331_tx_1 90 + 512981 513739 . 1 759 0 -chrII 513247 513739 HC_gene_0331_tx_2 35 + 513247 513739 . 1 493 0 -chrII 513611 515367 HC_gene_0658_tx_1 7 - 513611 515367 . 1 1757 0 -chrII 515655 517378 HC_gene_0332_tx_1 43 + 515655 517378 . 1 1724 0 -chrII 515655 517504 HC_gene_0332_tx_2 3 + 515655 517504 . 1 1850 0 -chrII 515730 517378 HC_gene_0332_tx_3 3 + 515730 517378 . 1 1649 0 -chrII 515950 517378 HC_gene_0332_tx_4 4 + 515950 517378 . 1 1429 0 -chrII 516823 517378 HC_gene_0332_tx_5 17 + 516823 517378 . 1 556 0 -chrII 517199 520316 HC_gene_0659_tx_1 1 - 517199 520316 . 1 3118 0 -chrII 517199 521357 HC_gene_0659_tx_2 1 - 517199 521357 . 1 4159 0 -chrII 521614 524042 MC_gene_0660_tx_1 1 - 521614 524042 . 1 2429 0 -chrII 521706 526713 MC_gene_0660_tx_2 1 - 521706 526713 . 1 5008 0 -chrII 523142 523657 MC_gene_0660_tx_3 1 - 523142 523657 . 1 516 0 -chrII 526866 528042 HC_gene_0661_tx_1 9 - 526866 528042 . 1 1177 0 -chrII 526920 528042 HC_gene_0661_tx_2 19 - 526920 528042 . 1 1123 0 -chrII 526920 528046 HC_gene_0661_tx_3 2 - 526920 528046 . 1 1127 0 -chrII 526920 528047 HC_gene_0661_tx_4 1 - 526920 528047 . 1 1128 0 -chrII 526920 528060 HC_gene_0661_tx_5 1 - 526920 528060 . 1 1141 0 -chrII 527183 527743 HC_gene_0333_tx_1 9 + 527183 527743 . 1 561 0 -chrII 528270 530759 HC_gene_0334_tx_1 27 + 528270 530759 . 1 2490 0 -chrII 528270 530759 HC_gene_0334_tx_2 1 + 528270 530759 . 2 32,2232 0,258 -chrII 528270 530759 HC_gene_0334_tx_3 1 + 528270 530759 . 2 51,2349 0,141 -chrII 528270 530759 HC_gene_0334_tx_4 1 + 528270 530759 . 2 1398,1012 0,1478 -chrII 528270 530759 HC_gene_0334_tx_5 1 + 528270 530759 . 2 1274,1095 0,1395 -chrII 528954 530759 HC_gene_0334_tx_6 5 + 528954 530759 . 1 1806 0 -chrII 530371 532205 HC_gene_0662_tx_1 2 - 530371 532205 . 1 1835 0 -chrII 530648 530984 HC_gene_0662_tx_22 40 - 530648 530984 . 1 337 0 -chrII 530648 531039 HC_gene_0662_tx_23 1 - 530648 531039 . 1 392 0 -chrII 530648 531098 HC_gene_0662_tx_24 40 - 530648 531098 . 1 451 0 -chrII 530648 531327 HC_gene_0662_tx_28 28 - 530648 531327 . 1 680 0 -chrII 530648 531524 HC_gene_0662_tx_30 20 - 530648 531524 . 1 877 0 -chrII 530648 531918 HC_gene_0662_tx_2 9 - 530648 531918 . 1 1271 0 -chrII 530648 531918 HC_gene_0662_tx_3 1 - 530648 531918 . 2 557,283 0,988 -chrII 530648 531997 HC_gene_0662_tx_4 9 - 530648 531997 . 1 1350 0 -chrII 530648 532064 HC_gene_0662_tx_5 10 - 530648 532064 . 1 1417 0 -chrII 530648 532205 HC_gene_0662_tx_6 168 - 530648 532205 . 1 1558 0 -chrII 530648 532205 HC_gene_0662_tx_7 1 - 530648 532205 . 2 184,1203 0,355 -chrII 530648 532205 HC_gene_0662_tx_8 1 - 530648 532205 . 2 524,909 0,649 -chrII 530730 530984 HC_gene_0662_tx_25 31 - 530730 530984 . 1 255 0 -chrII 530730 531039 HC_gene_0662_tx_26 2 - 530730 531039 . 1 310 0 -chrII 530730 531098 HC_gene_0662_tx_27 49 - 530730 531098 . 1 369 0 -chrII 530730 531327 HC_gene_0662_tx_29 59 - 530730 531327 . 1 598 0 -chrII 530730 531524 HC_gene_0662_tx_31 25 - 530730 531524 . 1 795 0 -chrII 530730 531918 HC_gene_0662_tx_9 7 - 530730 531918 . 1 1189 0 -chrII 530730 531997 HC_gene_0662_tx_10 12 - 530730 531997 . 1 1268 0 -chrII 530730 531997 HC_gene_0662_tx_11 1 - 530730 531997 . 2 545,584 0,684 -chrII 530730 532064 HC_gene_0662_tx_12 17 - 530730 532064 . 1 1335 0 -chrII 530730 532196 HC_gene_0662_tx_13 1 - 530730 532196 . 2 311,684 0,783 -chrII 530730 532205 HC_gene_0662_tx_14 247 - 530730 532205 . 1 1476 0 -chrII 530730 532205 HC_gene_0662_tx_15 1 - 530730 532205 . 2 818,531 0,945 -chrII 530730 532205 HC_gene_0662_tx_16 1 - 530730 532205 . 2 48,1384 0,92 -chrII 530730 532205 HC_gene_0662_tx_17 1 - 530730 532205 . 2 519,801 0,675 -chrII 530730 532205 HC_gene_0662_tx_18 1 - 530730 532205 . 2 519,909 0,567 -chrII 530730 532205 HC_gene_0662_tx_19 1 - 530730 532205 . 2 1038,391 0,1085 -chrII 530730 532205 HC_gene_0662_tx_20 1 - 530730 532205 . 2 698,729 0,747 -chrII 530730 532205 HC_gene_0662_tx_21 1 - 530730 532205 . 2 311,1089 0,387 -chrII 532433 533008 MC_gene_0663_tx_1 1 - 532433 533008 . 1 576 0 -chrII 532504 533321 HC_gene_0335_tx_1 2 + 532504 533321 . 1 818 0 -chrII 533684 534979 HC_gene_0664_tx_1 2 - 533684 534979 . 1 1296 0 -chrII 533705 534927 HC_gene_0336_tx_1 145 + 533705 534927 . 1 1223 0 -chrII 533705 534927 HC_gene_0336_tx_2 1 + 533705 534927 . 2 1126,53 0,1170 -chrII 533705 534927 HC_gene_0336_tx_3 1 + 533705 534927 . 2 529,450 0,773 -chrII 533705 534927 HC_gene_0336_tx_4 1 + 533705 534927 . 2 1084,92 0,1131 -chrII 533842 534927 HC_gene_0336_tx_5 21 + 533842 534927 . 1 1086 0 -chrII 534363 534927 HC_gene_0336_tx_6 56 + 534363 534927 . 1 565 0 -chrII 534825 534979 HC_gene_0664_tx_2 1 - 534825 534979 . 1 155 0 -chrII 535063 536214 LC_gene_0665_tx_1 1 - 535063 536214 . 1 1152 0 -chrII 535187 536318 HC_gene_0337_tx_1 118 + 535187 536318 . 1 1132 0 -chrII 535187 536490 HC_gene_0337_tx_2 2 + 535187 536490 . 1 1304 0 -chrII 535542 536318 HC_gene_0337_tx_3 15 + 535542 536318 . 1 777 0 -chrII 535913 536318 HC_gene_0337_tx_4 24 + 535913 536318 . 1 406 0 -chrII 536549 537887 HC_gene_0338_tx_1 18 + 536549 537887 . 1 1339 0 -chrII 536549 539792 HC_gene_0338_tx_2 1 + 536549 539792 . 2 84,2805 0,439 -chrII 537708 537887 HC_gene_0338_tx_3 1 + 537708 537887 . 1 180 0 -chrII 537708 539792 HC_gene_0338_tx_4 2 + 537708 539792 . 1 2085 0 -chrII 538549 539792 HC_gene_0338_tx_5 1 + 538549 539792 . 1 1244 0 -chrII 538733 539792 HC_gene_0338_tx_6 2 + 538733 539792 . 1 1060 0 -chrII 538966 539319 MC_gene_0666_tx_1 1 - 538966 539319 . 1 354 0 -chrII 539012 539441 MC_gene_0667_tx_1 1 - 539012 539441 . 1 430 0 -chrII 539476 539792 HC_gene_0338_tx_7 2 + 539476 539792 . 1 317 0 -chrII 539694 541107 MC_gene_0668_tx_1 1 - 539694 541107 . 1 1414 0 -chrII 539775 540280 MC_gene_0668_tx_2 1 - 539775 540280 . 1 506 0 -chrII 540006 541117 HC_gene_0339_tx_1 1 + 540006 541117 . 1 1112 0 -chrII 540006 541118 HC_gene_0339_tx_2 2 + 540006 541118 . 1 1113 0 -chrII 540006 541119 HC_gene_0339_tx_3 2 + 540006 541119 . 1 1114 0 -chrII 540006 541120 HC_gene_0339_tx_4 1 + 540006 541120 . 1 1115 0 -chrII 540006 541121 HC_gene_0339_tx_5 1 + 540006 541121 . 1 1116 0 -chrII 540006 541124 HC_gene_0339_tx_6 7 + 540006 541124 . 1 1119 0 -chrII 540006 541127 HC_gene_0339_tx_7 1 + 540006 541127 . 1 1122 0 -chrII 540006 541130 HC_gene_0339_tx_8 1 + 540006 541130 . 1 1125 0 -chrII 540006 541131 HC_gene_0339_tx_9 2 + 540006 541131 . 1 1126 0 -chrII 540006 541132 HC_gene_0339_tx_10 1 + 540006 541132 . 1 1127 0 -chrII 540006 541133 HC_gene_0339_tx_11 2 + 540006 541133 . 1 1128 0 -chrII 540006 541135 HC_gene_0339_tx_12 2 + 540006 541135 . 1 1130 0 -chrII 540006 541136 HC_gene_0339_tx_13 1 + 540006 541136 . 1 1131 0 -chrII 540006 541139 HC_gene_0339_tx_14 1 + 540006 541139 . 1 1134 0 -chrII 540006 541140 HC_gene_0339_tx_15 2 + 540006 541140 . 1 1135 0 -chrII 540006 541141 HC_gene_0339_tx_16 1 + 540006 541141 . 1 1136 0 -chrII 540006 541142 HC_gene_0339_tx_17 2 + 540006 541142 . 1 1137 0 -chrII 540006 541143 HC_gene_0339_tx_18 1 + 540006 541143 . 1 1138 0 -chrII 540006 541147 HC_gene_0339_tx_19 1 + 540006 541147 . 1 1142 0 -chrII 540006 541206 HC_gene_0339_tx_20 88 + 540006 541206 . 1 1201 0 -chrII 540006 541206 HC_gene_0339_tx_21 1 + 540006 541206 . 2 281,859 0,342 -chrII 540295 541124 HC_gene_0339_tx_22 1 + 540295 541124 . 1 830 0 -chrII 540295 541130 HC_gene_0339_tx_23 1 + 540295 541130 . 1 836 0 -chrII 540295 541206 HC_gene_0339_tx_24 6 + 540295 541206 . 1 912 0 -chrII 540417 541120 HC_gene_0339_tx_25 1 + 540417 541120 . 1 704 0 -chrII 540417 541124 HC_gene_0339_tx_26 2 + 540417 541124 . 1 708 0 -chrII 540417 541130 HC_gene_0339_tx_27 1 + 540417 541130 . 1 714 0 -chrII 540417 541134 HC_gene_0339_tx_28 1 + 540417 541134 . 1 718 0 -chrII 540417 541142 HC_gene_0339_tx_29 1 + 540417 541142 . 1 726 0 -chrII 540417 541206 HC_gene_0339_tx_30 9 + 540417 541206 . 1 790 0 -chrII 540549 541206 HC_gene_0339_tx_31 9 + 540549 541206 . 1 658 0 -chrII 540631 541119 HC_gene_0339_tx_32 1 + 540631 541119 . 1 489 0 -chrII 540631 541121 HC_gene_0339_tx_33 1 + 540631 541121 . 1 491 0 -chrII 540631 541124 HC_gene_0339_tx_34 1 + 540631 541124 . 1 494 0 -chrII 540631 541135 HC_gene_0339_tx_35 1 + 540631 541135 . 1 505 0 -chrII 540631 541148 HC_gene_0339_tx_36 1 + 540631 541148 . 1 518 0 -chrII 540631 541206 HC_gene_0339_tx_37 14 + 540631 541206 . 1 576 0 -chrII 541132 542753 HC_gene_0669_tx_1 1 - 541132 542753 . 1 1622 0 -chrII 541132 542964 HC_gene_0669_tx_2 1 - 541132 542964 . 2 1387,232 0,1601 -chrII 541132 542964 HC_gene_0669_tx_3 1 - 541132 542964 . 1 1833 0 -chrII 541132 544507 HC_gene_0669_tx_4 2 - 541132 544507 . 1 3376 0 -chrII 541132 544507 HC_gene_0669_tx_5 1 - 541132 544507 . 2 673,2625 0,751 -chrII 541132 544749 HC_gene_0669_tx_6 1 - 541132 544749 . 1 3618 0 -chrII 541436 542326 MC_gene_0340_tx_1 1 + 541436 542326 . 1 891 0 -chrII 544881 546112 HC_gene_0341_tx_1 98 + 544881 546112 . 1 1232 0 -chrII 544881 546112 HC_gene_0341_tx_2 1 + 544881 546112 . 2 852,330 0,902 -chrII 544881 546184 HC_gene_0341_tx_3 6 + 544881 546184 . 1 1304 0 -chrII 545095 546112 HC_gene_0341_tx_4 8 + 545095 546112 . 1 1018 0 -chrII 545095 546112 HC_gene_0341_tx_5 1 + 545095 546112 . 2 259,547 0,471 -chrII 545095 546184 HC_gene_0341_tx_6 1 + 545095 546184 . 1 1090 0 -chrII 545199 546112 HC_gene_0341_tx_7 12 + 545199 546112 . 1 914 0 -chrII 545460 546112 HC_gene_0341_tx_8 16 + 545460 546112 . 1 653 0 -chrII 545460 546184 HC_gene_0341_tx_9 1 + 545460 546184 . 1 725 0 -chrII 546002 546583 MC_gene_0670_tx_1 1 - 546002 546583 . 1 582 0 -chrII 546333 548411 HC_gene_0342_tx_1 1 + 546333 548411 . 2 1069,897 0,1182 -chrII 546377 548411 HC_gene_0342_tx_2 7 + 546377 548411 . 1 2035 0 -chrII 546377 548411 HC_gene_0342_tx_3 1 + 546377 548411 . 2 992,972 0,1063 -chrII 546377 548411 HC_gene_0342_tx_4 1 + 546377 548411 . 3 122,403,829 0,741,1206 -chrII 547055 547714 LC_gene_0671_tx_1 1 - 547055 547714 . 1 660 0 -chrII 547395 548267 HC_gene_0342_tx_5 2 + 547395 548267 . 1 873 0 -chrII 547395 548411 HC_gene_0342_tx_6 50 + 547395 548411 . 1 1017 0 -chrII 547936 548411 HC_gene_0342_tx_7 13 + 547936 548411 . 1 476 0 -chrII 548262 548771 HC_gene_0672_tx_1 48 - 548262 548771 . 1 510 0 -chrII 548262 548930 HC_gene_0672_tx_2 30 - 548262 548930 . 1 669 0 -chrII 548262 549101 HC_gene_0672_tx_3 355 - 548262 549101 . 1 840 0 -chrII 549216 549532 HC_gene_0673_tx_1 8 - 549216 549532 . 1 317 0 -chrII 549216 549586 HC_gene_0673_tx_2 1 - 549216 549586 . 1 371 0 -chrII 549694 551020 HC_gene_0343_tx_1 59 + 549694 551020 . 1 1327 0 -chrII 549694 551020 HC_gene_0343_tx_2 1 + 549694 551020 . 2 121,768 0,559 -chrII 549694 551020 HC_gene_0343_tx_3 1 + 549694 551020 . 2 161,1015 0,312 -chrII 549694 551020 HC_gene_0343_tx_4 1 + 549694 551020 . 2 181,1091 0,236 -chrII 549694 551020 HC_gene_0343_tx_5 1 + 549694 551020 . 2 270,932 0,395 -chrII 549694 551020 HC_gene_0343_tx_6 1 + 549694 551020 . 2 892,299 0,1028 -chrII 549694 551020 HC_gene_0343_tx_7 1 + 549694 551020 . 2 389,768 0,559 -chrII 550000 551020 HC_gene_0343_tx_8 12 + 550000 551020 . 1 1021 0 -chrII 550096 551020 HC_gene_0343_tx_9 13 + 550096 551020 . 1 925 0 -chrII 550096 551020 HC_gene_0343_tx_10 1 + 550096 551020 . 2 518,358 0,567 -chrII 550187 551020 HC_gene_0343_tx_11 14 + 550187 551020 . 1 834 0 -chrII 550290 551020 HC_gene_0343_tx_12 16 + 550290 551020 . 1 731 0 -chrII 550926 553238 HC_gene_0674_tx_1 3 - 550926 553238 . 1 2313 0 -chrII 550996 553238 HC_gene_0674_tx_2 1 - 550996 553238 . 1 2243 0 -chrII 553431 553915 HC_gene_0675_tx_1 7 - 553431 553915 . 1 485 0 -chrII 553534 554448 MC_gene_0344_tx_1 1 + 553534 554448 . 1 915 0 -chrII 554341 554603 HC_gene_0676_tx_1 1 - 554341 554603 . 1 263 0 -chrII 554341 555232 HC_gene_0676_tx_2 2 - 554341 555232 . 1 892 0 -chrII 554341 555674 HC_gene_0676_tx_3 1 - 554341 555674 . 1 1334 0 -chrII 554570 555140 HC_gene_0676_tx_5 1 - 554570 555140 . 1 571 0 -chrII 554570 555144 HC_gene_0676_tx_6 1 - 554570 555144 . 1 575 0 -chrII 554570 555674 HC_gene_0676_tx_4 1 - 554570 555674 . 1 1105 0 -chrII 555262 556387 HC_gene_0345_tx_1 4 + 555262 556387 . 1 1126 0 -chrII 555478 556387 HC_gene_0345_tx_2 12 + 555478 556387 . 1 910 0 -chrII 556066 558348 HC_gene_0345_tx_3 1 + 556066 558348 . 1 2283 0 -chrII 556285 556387 HC_gene_0345_tx_11 3 + 556285 556387 . 1 103 0 -chrII 556285 557507 HC_gene_0345_tx_12 1 + 556285 557507 . 1 1223 0 -chrII 556285 558348 HC_gene_0345_tx_4 135 + 556285 558348 . 1 2064 0 -chrII 556285 558348 HC_gene_0345_tx_5 1 + 556285 558348 . 2 994,984 0,1080 -chrII 556285 558348 HC_gene_0345_tx_6 1 + 556285 558348 . 2 1604,359 0,1705 -chrII 556285 558348 HC_gene_0345_tx_7 1 + 556285 558348 . 2 1065,936 0,1128 -chrII 556285 558348 HC_gene_0345_tx_8 1 + 556285 558348 . 2 1284,725 0,1339 -chrII 556301 556990 LC_gene_0677_tx_1 1 - 556301 556990 . 1 690 0 -chrII 556562 558348 HC_gene_0345_tx_9 19 + 556562 558348 . 1 1787 0 -chrII 556562 558348 HC_gene_0345_tx_10 1 + 556562 558348 . 2 619,374 0,1413 -chrII 557006 557509 HC_gene_0345_tx_13 1 + 557006 557509 . 1 504 0 -chrII 557006 558348 HC_gene_0345_tx_14 15 + 557006 558348 . 1 1343 0 -chrII 557969 558289 MC_gene_0678_tx_1 1 - 557969 558289 . 1 321 0 -chrII 558356 559120 LC_gene_0679_tx_1 1 - 558356 559120 . 1 765 0 -chrII 558643 559816 HC_gene_0346_tx_1 162 + 558643 559816 . 1 1174 0 -chrII 559402 559816 HC_gene_0346_tx_2 39 + 559402 559816 . 1 415 0 -chrII 559737 560013 MC_gene_0680_tx_1 1 - 559737 560013 . 1 277 0 -chrII 560001 561070 HC_gene_0347_tx_1 52 + 560001 561070 . 1 1070 0 -chrII 560001 561070 HC_gene_0347_tx_2 1 + 560001 561070 . 2 651,255 0,815 -chrII 560001 561070 HC_gene_0347_tx_3 1 + 560001 561070 . 2 347,450 0,620 -chrII 560226 561070 HC_gene_0347_tx_4 7 + 560226 561070 . 1 845 0 -chrII 560226 561070 HC_gene_0347_tx_5 1 + 560226 561070 . 2 368,333 0,512 -chrII 560734 560995 MC_gene_0681_tx_1 1 - 560734 560995 . 1 262 0 -chrII 561415 563016 MC_gene_0348_tx_1 1 + 561415 563016 . 1 1602 0 -chrII 561504 562456 LC_gene_0682_tx_1 1 - 561504 562456 . 1 953 0 -chrII 562747 563838 HC_gene_0683_tx_1 1 - 562747 563838 . 1 1092 0 -chrII 562747 564707 HC_gene_0683_tx_3 2 - 562747 564707 . 1 1961 0 -chrII 562897 563214 HC_gene_0683_tx_45 78 - 562897 563214 . 1 318 0 -chrII 562897 563645 HC_gene_0683_tx_46 219 - 562897 563645 . 1 749 0 -chrII 562897 563645 HC_gene_0683_tx_47 1 - 562897 563645 . 2 98,591 0,158 -chrII 562897 563838 HC_gene_0683_tx_2 161 - 562897 563838 . 1 942 0 -chrII 562897 564110 HC_gene_0683_tx_4 60 - 562897 564110 . 1 1214 0 -chrII 562897 564110 HC_gene_0683_tx_5 1 - 562897 564110 . 2 507,570 0,644 -chrII 562897 564110 HC_gene_0683_tx_6 1 - 562897 564110 . 2 212,821 0,393 -chrII 562897 564164 HC_gene_0683_tx_7 107 - 562897 564164 . 1 1268 0 -chrII 562897 564164 HC_gene_0683_tx_8 1 - 562897 564164 . 2 961,117 0,1151 -chrII 562897 564293 HC_gene_0683_tx_9 1 - 562897 564293 . 2 761,135 0,1262 -chrII 562897 564331 HC_gene_0683_tx_10 119 - 562897 564331 . 1 1435 0 -chrII 562897 564331 HC_gene_0683_tx_11 1 - 562897 564331 . 2 1092,215 0,1220 -chrII 562897 564331 HC_gene_0683_tx_12 1 - 562897 564331 . 2 990,266 0,1169 -chrII 562897 564483 HC_gene_0683_tx_13 73 - 562897 564483 . 1 1587 0 -chrII 562897 564483 HC_gene_0683_tx_14 1 - 562897 564483 . 2 1126,367 0,1220 -chrII 562897 564483 HC_gene_0683_tx_15 1 - 562897 564483 . 2 509,895 0,692 -chrII 562897 564483 HC_gene_0683_tx_16 1 - 562897 564483 . 2 857,268 0,1319 -chrII 562897 564483 HC_gene_0683_tx_17 1 - 562897 564483 . 2 1290,127 0,1460 -chrII 562897 564607 HC_gene_0683_tx_18 1 - 562897 564607 . 2 1291,137 0,1574 -chrII 562897 564638 HC_gene_0683_tx_19 1 - 562897 564638 . 2 949,163 0,1579 -chrII 562897 564690 HC_gene_0683_tx_20 1 - 562897 564690 . 2 832,872 0,922 -chrII 562897 564707 HC_gene_0683_tx_21 582 - 562897 564707 . 1 1811 0 -chrII 562897 564707 HC_gene_0683_tx_22 1 - 562897 564707 . 2 992,306 0,1505 -chrII 562897 564707 HC_gene_0683_tx_23 1 - 562897 564707 . 2 1275,139 0,1672 -chrII 562897 564707 HC_gene_0683_tx_24 1 - 562897 564707 . 2 585,1086 0,725 -chrII 562897 564707 HC_gene_0683_tx_25 1 - 562897 564707 . 2 1193,139 0,1672 -chrII 562897 564707 HC_gene_0683_tx_26 1 - 562897 564707 . 2 773,139 0,1672 -chrII 562897 564707 HC_gene_0683_tx_27 1 - 562897 564707 . 2 1548,107 0,1704 -chrII 562897 564707 HC_gene_0683_tx_28 1 - 562897 564707 . 2 1041,413 0,1398 -chrII 562897 564707 HC_gene_0683_tx_29 1 - 562897 564707 . 2 990,735 0,1076 -chrII 562897 564707 HC_gene_0683_tx_30 1 - 562897 564707 . 2 1008,753 0,1058 -chrII 562897 564707 HC_gene_0683_tx_31 1 - 562897 564707 . 2 714,1044 0,767 -chrII 562897 564707 HC_gene_0683_tx_32 1 - 562897 564707 . 2 610,1147 0,664 -chrII 562897 564707 HC_gene_0683_tx_33 1 - 562897 564707 . 2 1180,321 0,1490 -chrII 562897 564707 HC_gene_0683_tx_34 1 - 562897 564707 . 2 1548,180 0,1631 -chrII 562897 564707 HC_gene_0683_tx_35 1 - 562897 564707 . 2 1050,490 0,1321 -chrII 562897 564707 HC_gene_0683_tx_36 1 - 562897 564707 . 2 928,507 0,1304 -chrII 562897 564707 HC_gene_0683_tx_37 1 - 562897 564707 . 2 712,286 0,1525 -chrII 562897 564707 HC_gene_0683_tx_38 1 - 562897 564707 . 2 861,490 0,1321 -chrII 562897 564707 HC_gene_0683_tx_39 1 - 562897 564707 . 2 1105,660 0,1151 -chrII 562897 564846 HC_gene_0683_tx_40 1 - 562897 564846 . 2 1765,68 0,1882 -chrII 563161 563645 HC_gene_0683_tx_48 3 - 563161 563645 . 1 485 0 -chrII 563161 563838 HC_gene_0683_tx_49 2 - 563161 563838 . 1 678 0 -chrII 563161 564110 HC_gene_0683_tx_41 3 - 563161 564110 . 1 950 0 -chrII 563161 564164 HC_gene_0683_tx_42 1 - 563161 564164 . 1 1004 0 -chrII 563161 564331 HC_gene_0683_tx_43 2 - 563161 564331 . 1 1171 0 -chrII 563161 564707 HC_gene_0683_tx_44 6 - 563161 564707 . 1 1547 0 -chrII 564853 565527 HC_gene_0349_tx_1 11 + 564853 565527 . 1 675 0 -chrII 564984 565527 HC_gene_0349_tx_2 36 + 564984 565527 . 1 544 0 -chrII 565213 565527 HC_gene_0349_tx_3 810 + 565213 565527 . 1 315 0 -chrII 565321 565527 HC_gene_0349_tx_4 16 + 565321 565527 . 1 207 0 -chrII 565621 567680 HC_gene_0350_tx_1 13 + 565621 567680 . 1 2060 0 -chrII 565621 567680 HC_gene_0350_tx_2 1 + 565621 567680 . 2 595,1252 0,808 -chrII 565621 567680 HC_gene_0350_tx_3 1 + 565621 567680 . 2 1069,875 0,1185 -chrII 565621 567680 HC_gene_0350_tx_4 1 + 565621 567680 . 2 1057,934 0,1126 -chrII 565845 567680 HC_gene_0350_tx_5 1 + 565845 567680 . 1 1836 0 -chrII 566054 567680 HC_gene_0350_tx_6 2 + 566054 567680 . 1 1627 0 -chrII 567442 567936 HC_gene_0684_tx_1 1 - 567442 567936 . 1 495 0 -chrII 567442 568536 HC_gene_0684_tx_2 20 - 567442 568536 . 1 1095 0 -chrII 567585 567936 HC_gene_0684_tx_7 1 - 567585 567936 . 1 352 0 -chrII 567585 568187 HC_gene_0684_tx_8 3 - 567585 568187 . 1 603 0 -chrII 567585 568536 HC_gene_0684_tx_3 24 - 567585 568536 . 1 952 0 -chrII 567724 567936 HC_gene_0684_tx_9 3 - 567724 567936 . 1 213 0 -chrII 567724 568187 HC_gene_0684_tx_10 29 - 567724 568187 . 1 464 0 -chrII 567724 568526 HC_gene_0684_tx_4 1 - 567724 568526 . 2 127,596 0,207 -chrII 567724 568536 HC_gene_0684_tx_5 259 - 567724 568536 . 1 813 0 -chrII 567724 568536 HC_gene_0684_tx_6 1 - 567724 568536 . 2 573,114 0,699 -chrII 568764 569839 HC_gene_0351_tx_1 38 + 568764 569839 . 1 1076 0 -chrII 568785 569839 HC_gene_0351_tx_2 1 + 568785 569839 . 2 195,372 0,683 -chrII 568797 569664 LC_gene_0685_tx_1 1 - 568797 569664 . 1 868 0 -chrII 568880 569839 HC_gene_0351_tx_3 3 + 568880 569839 . 1 960 0 -chrII 568970 569839 HC_gene_0351_tx_4 2 + 568970 569839 . 1 870 0 -chrII 569454 569839 HC_gene_0351_tx_5 10 + 569454 569839 . 1 386 0 -chrII 569794 571088 HC_gene_0686_tx_1 7 - 569794 571088 . 1 1295 0 -chrII 569794 571244 HC_gene_0686_tx_2 66 - 569794 571244 . 1 1451 0 -chrII 569794 571244 HC_gene_0686_tx_3 1 - 569794 571244 . 2 1171,181 0,1270 -chrII 569794 571244 HC_gene_0686_tx_4 1 - 569794 571244 . 2 944,366 0,1085 -chrII 569980 570533 LC_gene_0352_tx_1 1 + 569980 570533 . 1 554 0 -chrII 571347 571927 HC_gene_0687_tx_1 60 - 571347 571927 . 1 581 0 -chrII 571347 572095 HC_gene_0687_tx_2 6 - 571347 572095 . 1 749 0 -chrII 571347 572299 HC_gene_0687_tx_3 8 - 571347 572299 . 1 953 0 -chrII 571409 571761 MC_gene_0353_tx_1 1 + 571409 571761 . 1 353 0 -chrII 572054 573774 HC_gene_0354_tx_1 8 + 572054 573774 . 1 1721 0 -chrII 572054 573774 HC_gene_0354_tx_2 1 + 572054 573774 . 2 127,876 0,845 -chrII 572243 573774 HC_gene_0354_tx_3 6 + 572243 573774 . 1 1532 0 -chrII 573715 574365 HC_gene_0688_tx_1 7 - 573715 574365 . 1 651 0 -chrII 573715 574598 HC_gene_0688_tx_2 9 - 573715 574598 . 1 884 0 -chrII 573715 575780 HC_gene_0688_tx_3 2 - 573715 575780 . 1 2066 0 -chrII 573715 576012 HC_gene_0688_tx_4 13 - 573715 576012 . 1 2298 0 -chrII 574376 574761 LC_gene_0355_tx_1 1 + 574376 574761 . 1 386 0 -chrII 576193 577446 HC_gene_0689_tx_1 2 - 576193 577446 . 1 1254 0 -chrII 576193 577782 HC_gene_0689_tx_2 2 - 576193 577782 . 1 1590 0 -chrII 576193 577996 HC_gene_0689_tx_3 2 - 576193 577996 . 1 1804 0 -chrII 576193 578137 HC_gene_0689_tx_4 10 - 576193 578137 . 1 1945 0 -chrII 576193 578137 HC_gene_0689_tx_5 1 - 576193 578137 . 2 864,1039 0,906 -chrII 576368 576779 MC_gene_0356_tx_1 1 + 576368 576779 . 1 412 0 -chrII 578337 579040 HC_gene_0357_tx_1 1 + 578337 579040 . 1 704 0 -chrII 578337 579041 HC_gene_0357_tx_2 2 + 578337 579041 . 1 705 0 -chrII 578337 579048 HC_gene_0357_tx_3 4 + 578337 579048 . 1 712 0 -chrII 578337 579049 HC_gene_0357_tx_4 1 + 578337 579049 . 1 713 0 -chrII 578337 579051 HC_gene_0357_tx_5 2 + 578337 579051 . 1 715 0 -chrII 578337 579054 HC_gene_0357_tx_6 6 + 578337 579054 . 1 718 0 -chrII 578337 579055 HC_gene_0357_tx_7 1 + 578337 579055 . 1 719 0 -chrII 578337 579057 HC_gene_0357_tx_8 3 + 578337 579057 . 1 721 0 -chrII 578337 579059 HC_gene_0357_tx_9 3 + 578337 579059 . 1 723 0 -chrII 578337 579060 HC_gene_0357_tx_10 4 + 578337 579060 . 1 724 0 -chrII 578337 579061 HC_gene_0357_tx_11 2 + 578337 579061 . 1 725 0 -chrII 578337 579062 HC_gene_0357_tx_12 3 + 578337 579062 . 1 726 0 -chrII 578337 579063 HC_gene_0357_tx_13 3 + 578337 579063 . 1 727 0 -chrII 578337 579064 HC_gene_0357_tx_14 1 + 578337 579064 . 1 728 0 -chrII 578337 579067 HC_gene_0357_tx_15 1 + 578337 579067 . 1 731 0 -chrII 578337 579068 HC_gene_0357_tx_16 5 + 578337 579068 . 1 732 0 -chrII 578337 579069 HC_gene_0357_tx_17 8 + 578337 579069 . 1 733 0 -chrII 578337 579070 HC_gene_0357_tx_18 3 + 578337 579070 . 1 734 0 -chrII 578337 579073 HC_gene_0357_tx_19 1 + 578337 579073 . 1 737 0 -chrII 578337 579075 HC_gene_0357_tx_20 1 + 578337 579075 . 1 739 0 -chrII 578337 579076 HC_gene_0357_tx_21 1 + 578337 579076 . 1 740 0 -chrII 578337 579077 HC_gene_0357_tx_22 1 + 578337 579077 . 1 741 0 -chrII 578337 579079 HC_gene_0357_tx_23 1 + 578337 579079 . 1 743 0 -chrII 578337 579080 HC_gene_0357_tx_24 2 + 578337 579080 . 1 744 0 -chrII 578337 579082 HC_gene_0357_tx_25 2 + 578337 579082 . 1 746 0 -chrII 578337 579083 HC_gene_0357_tx_26 1 + 578337 579083 . 1 747 0 -chrII 578337 579086 HC_gene_0357_tx_27 2 + 578337 579086 . 1 750 0 -chrII 578337 579087 HC_gene_0357_tx_28 1 + 578337 579087 . 1 751 0 -chrII 578337 579091 HC_gene_0357_tx_29 4 + 578337 579091 . 1 755 0 -chrII 578337 579092 HC_gene_0357_tx_30 1 + 578337 579092 . 1 756 0 -chrII 578337 579094 HC_gene_0357_tx_31 5 + 578337 579094 . 1 758 0 -chrII 578337 579095 HC_gene_0357_tx_32 1 + 578337 579095 . 1 759 0 -chrII 578337 579098 HC_gene_0357_tx_33 6 + 578337 579098 . 1 762 0 -chrII 578337 579100 HC_gene_0357_tx_34 4 + 578337 579100 . 1 764 0 -chrII 578337 579101 HC_gene_0357_tx_35 1 + 578337 579101 . 1 765 0 -chrII 578337 579102 HC_gene_0357_tx_36 5 + 578337 579102 . 1 766 0 -chrII 578337 579104 HC_gene_0357_tx_37 1 + 578337 579104 . 1 768 0 -chrII 578337 579105 HC_gene_0357_tx_38 3 + 578337 579105 . 1 769 0 -chrII 578337 579106 HC_gene_0357_tx_39 4 + 578337 579106 . 1 770 0 -chrII 578337 579107 HC_gene_0357_tx_40 3 + 578337 579107 . 1 771 0 -chrII 578337 579107 HC_gene_0357_tx_41 1 + 578337 579107 . 2 656,62 0,709 -chrII 578337 579108 HC_gene_0357_tx_42 10 + 578337 579108 . 1 772 0 -chrII 578337 579110 HC_gene_0357_tx_43 1 + 578337 579110 . 1 774 0 -chrII 578337 579111 HC_gene_0357_tx_44 7 + 578337 579111 . 1 775 0 -chrII 578337 579112 HC_gene_0357_tx_45 9 + 578337 579112 . 1 776 0 -chrII 578337 579113 HC_gene_0357_tx_46 14 + 578337 579113 . 1 777 0 -chrII 578337 579114 HC_gene_0357_tx_47 3 + 578337 579114 . 1 778 0 -chrII 578337 579115 HC_gene_0357_tx_48 1 + 578337 579115 . 1 779 0 -chrII 578337 579116 HC_gene_0357_tx_49 2 + 578337 579116 . 1 780 0 -chrII 578337 579117 HC_gene_0357_tx_50 4 + 578337 579117 . 1 781 0 -chrII 578337 579118 HC_gene_0357_tx_51 4 + 578337 579118 . 1 782 0 -chrII 578337 579119 HC_gene_0357_tx_52 4 + 578337 579119 . 1 783 0 -chrII 578337 579123 HC_gene_0357_tx_53 9 + 578337 579123 . 1 787 0 -chrII 578337 579124 HC_gene_0357_tx_54 8 + 578337 579124 . 1 788 0 -chrII 578337 579125 HC_gene_0357_tx_55 1 + 578337 579125 . 2 605,80 0,709 -chrII 578337 579125 HC_gene_0357_tx_56 12 + 578337 579125 . 1 789 0 -chrII 578337 579129 HC_gene_0357_tx_57 5 + 578337 579129 . 1 793 0 -chrII 578337 579130 HC_gene_0357_tx_58 8 + 578337 579130 . 1 794 0 -chrII 578337 579132 HC_gene_0357_tx_59 3 + 578337 579132 . 1 796 0 -chrII 578337 579133 HC_gene_0357_tx_60 1 + 578337 579133 . 1 797 0 -chrII 578337 579136 HC_gene_0357_tx_61 1 + 578337 579136 . 1 800 0 -chrII 578337 579137 HC_gene_0357_tx_62 1 + 578337 579137 . 1 801 0 -chrII 578337 579139 HC_gene_0357_tx_63 1 + 578337 579139 . 1 803 0 -chrII 578337 579144 HC_gene_0357_tx_64 4 + 578337 579144 . 1 808 0 -chrII 578337 579144 HC_gene_0357_tx_65 1 + 578337 579144 . 2 271,485 0,323 -chrII 578337 579158 HC_gene_0357_tx_66 1 + 578337 579158 . 1 822 0 -chrII 578337 579167 HC_gene_0357_tx_67 1 + 578337 579167 . 1 831 0 -chrII 578337 579176 HC_gene_0357_tx_68 1 + 578337 579176 . 1 840 0 -chrII 578337 579178 HC_gene_0357_tx_69 2 + 578337 579178 . 1 842 0 -chrII 578487 579051 HC_gene_0357_tx_70 1 + 578487 579051 . 1 565 0 -chrII 578487 579054 HC_gene_0357_tx_71 2 + 578487 579054 . 1 568 0 -chrII 578487 579059 HC_gene_0357_tx_72 1 + 578487 579059 . 1 573 0 -chrII 578487 579062 HC_gene_0357_tx_73 1 + 578487 579062 . 1 576 0 -chrII 578487 579068 HC_gene_0357_tx_74 1 + 578487 579068 . 1 582 0 -chrII 578487 579069 HC_gene_0357_tx_75 2 + 578487 579069 . 1 583 0 -chrII 578487 579080 HC_gene_0357_tx_76 2 + 578487 579080 . 1 594 0 -chrII 578487 579096 HC_gene_0357_tx_77 1 + 578487 579096 . 1 610 0 -chrII 578487 579099 HC_gene_0357_tx_78 1 + 578487 579099 . 1 613 0 -chrII 578487 579100 HC_gene_0357_tx_79 1 + 578487 579100 . 1 614 0 -chrII 578487 579101 HC_gene_0357_tx_80 1 + 578487 579101 . 1 615 0 -chrII 578487 579103 HC_gene_0357_tx_81 1 + 578487 579103 . 1 617 0 -chrII 578487 579108 HC_gene_0357_tx_82 1 + 578487 579108 . 1 622 0 -chrII 578487 579111 HC_gene_0357_tx_83 2 + 578487 579111 . 1 625 0 -chrII 578487 579112 HC_gene_0357_tx_84 1 + 578487 579112 . 1 626 0 -chrII 578487 579113 HC_gene_0357_tx_85 1 + 578487 579113 . 1 627 0 -chrII 578487 579115 HC_gene_0357_tx_86 1 + 578487 579115 . 1 629 0 -chrII 578487 579118 HC_gene_0357_tx_87 1 + 578487 579118 . 1 632 0 -chrII 578487 579123 HC_gene_0357_tx_88 1 + 578487 579123 . 1 637 0 -chrII 578487 579124 HC_gene_0357_tx_89 1 + 578487 579124 . 1 638 0 -chrII 578487 579125 HC_gene_0357_tx_90 3 + 578487 579125 . 1 639 0 -chrII 578487 579130 HC_gene_0357_tx_91 1 + 578487 579130 . 1 644 0 -chrII 578487 579133 HC_gene_0357_tx_92 1 + 578487 579133 . 1 647 0 -chrII 579010 579995 HC_gene_0690_tx_1 22 - 579010 579995 . 1 986 0 -chrII 579010 580269 HC_gene_0690_tx_2 16 - 579010 580269 . 1 1260 0 -chrII 579010 580369 HC_gene_0690_tx_3 13 - 579010 580369 . 1 1360 0 -chrII 579010 580471 HC_gene_0690_tx_4 6 - 579010 580471 . 1 1462 0 -chrII 579010 580471 HC_gene_0690_tx_5 1 - 579010 580471 . 2 641,745 0,717 -chrII 579010 581468 HC_gene_0690_tx_6 18 - 579010 581468 . 1 2459 0 -chrII 579010 581468 HC_gene_0690_tx_7 1 - 579010 581468 . 2 1554,699 0,1760 -chrII 581581 582058 HC_gene_0691_tx_1 51 - 581581 582058 . 1 478 0 -chrII 581581 582112 HC_gene_0691_tx_2 4 - 581581 582112 . 1 532 0 -chrII 581581 582195 HC_gene_0691_tx_3 328 - 581581 582195 . 1 615 0 -chrII 581755 582318 MC_gene_0358_tx_1 1 + 581755 582318 . 1 564 0 -chrII 582175 583377 LC_gene_0692_tx_1 1 - 582175 583377 . 1 1203 0 -chrII 582368 583465 HC_gene_0359_tx_1 31 + 582368 583465 . 1 1098 0 -chrII 582368 583465 HC_gene_0359_tx_2 1 + 582368 583465 . 2 299,720 0,378 -chrII 583601 584804 HC_gene_0360_tx_1 30 + 583601 584804 . 1 1204 0 -chrII 583601 584925 HC_gene_0360_tx_2 1 + 583601 584925 . 1 1325 0 -chrII 584669 585379 HC_gene_0693_tx_1 5 - 584669 585379 . 1 711 0 -chrII 584669 585379 HC_gene_0693_tx_2 1 - 584669 585379 . 2 98,547 0,164 -chrII 584669 585678 HC_gene_0693_tx_3 9 - 584669 585678 . 1 1010 0 -chrII 584669 585861 HC_gene_0693_tx_4 6 - 584669 585861 . 1 1193 0 -chrII 584669 585861 HC_gene_0693_tx_5 1 - 584669 585861 . 2 407,735 0,458 -chrII 584669 586195 HC_gene_0693_tx_6 51 - 584669 586195 . 1 1527 0 -chrII 586458 588926 HC_gene_0694_tx_1 2 - 586458 588926 . 1 2469 0 -chrII 586458 589174 HC_gene_0694_tx_2 7 - 586458 589174 . 1 2717 0 -chrII 586458 589174 HC_gene_0694_tx_3 1 - 586458 589174 . 2 1185,1408 0,1309 -chrII 590077 591388 MC_gene_0695_tx_1 1 - 590077 591388 . 1 1312 0 -chrII 591500 591706 MC_gene_0361_tx_1 1 + 591500 591706 . 1 207 0 -chrII 591608 592073 HC_gene_0696_tx_1 298 - 591608 592073 . 1 466 0 -chrII 591608 592283 HC_gene_0696_tx_2 246 - 591608 592283 . 1 676 0 -chrII 591608 592800 HC_gene_0696_tx_3 79 - 591608 592800 . 2 809,32 0,1161 -chrII 591608 592800 HC_gene_0696_tx_4 28 - 591608 592800 . 1 1193 0 -chrII 593109 595598 HC_gene_0697_tx_1 1 - 593109 595598 . 1 2490 0 -chrII 594112 595065 LC_gene_0362_tx_1 1 + 594112 595065 . 1 954 0 -chrII 595068 596054 MC_gene_0363_tx_1 1 + 595068 596054 . 1 987 0 -chrII 596059 597141 HC_gene_0364_tx_1 53 + 596059 597141 . 1 1083 0 -chrII 597345 599024 HC_gene_0365_tx_1 1 + 597345 599024 . 1 1680 0 -chrII 597345 599024 HC_gene_0365_tx_2 1 + 597345 599024 . 2 838,776 0,904 -chrII 597345 599078 HC_gene_0365_tx_3 2 + 597345 599078 . 1 1734 0 -chrII 598938 599979 HC_gene_0698_tx_1 20 - 598938 599979 . 1 1042 0 -chrII 599003 599979 HC_gene_0698_tx_2 19 - 599003 599979 . 1 977 0 -chrII 599079 599979 HC_gene_0698_tx_3 7 - 599079 599979 . 1 901 0 -chrII 600751 602524 LC_gene_0366_tx_1 1 + 600751 602524 . 1 1774 0 -chrII 601192 602220 HC_gene_0699_tx_1 7 - 601192 602220 . 1 1029 0 -chrII 601326 602220 HC_gene_0699_tx_2 8 - 601326 602220 . 1 895 0 -chrII 602504 603666 HC_gene_0367_tx_1 212 + 602504 603666 . 1 1163 0 -chrII 603004 603666 HC_gene_0367_tx_2 20 + 603004 603666 . 1 663 0 -chrII 603410 604183 HC_gene_0700_tx_1 19 - 603410 604183 . 1 774 0 -chrII 603482 604183 HC_gene_0700_tx_2 44 - 603482 604183 . 1 702 0 -chrII 604484 605579 HC_gene_0368_tx_1 221 + 604484 605579 . 2 31,652 0,444 -chrII 604484 605579 HC_gene_0368_tx_2 102 + 604484 605579 . 1 1096 0 -chrII 604916 605579 HC_gene_0368_tx_3 1412 + 604916 605579 . 1 664 0 -chrII 605110 605579 HC_gene_0368_tx_4 1194 + 605110 605579 . 1 470 0 -chrII 605503 606083 LC_gene_0701_tx_1 1 - 605503 606083 . 1 581 0 -chrII 606247 607185 HC_gene_0369_tx_1 23 + 606247 607185 . 2 34,517 0,422 -chrII 606247 607185 HC_gene_0369_tx_2 8 + 606247 607185 . 1 939 0 -chrII 606247 607283 HC_gene_0369_tx_3 119 + 606247 607283 . 2 34,615 0,422 -chrII 606247 607283 HC_gene_0369_tx_4 56 + 606247 607283 . 1 1037 0 -chrII 606808 607185 HC_gene_0369_tx_5 315 + 606808 607185 . 1 378 0 -chrII 606808 607283 HC_gene_0369_tx_6 2284 + 606808 607283 . 1 476 0 -chrII 607253 607848 LC_gene_0702_tx_1 1 - 607253 607848 . 1 596 0 -chrII 607488 609044 HC_gene_0370_tx_1 37 + 607488 609044 . 1 1557 0 -chrII 607488 609044 HC_gene_0370_tx_2 1 + 607488 609044 . 2 819,652 0,905 -chrII 607488 609044 HC_gene_0370_tx_3 1 + 607488 609044 . 2 819,642 0,915 -chrII 607488 609044 HC_gene_0370_tx_4 1 + 607488 609044 . 2 819,664 0,893 -chrII 607488 609044 HC_gene_0370_tx_5 1 + 607488 609044 . 2 861,642 0,915 -chrII 607828 609044 HC_gene_0370_tx_6 5 + 607828 609044 . 1 1217 0 -chrII 608086 609044 HC_gene_0370_tx_7 9 + 608086 609044 . 1 959 0 -chrII 608365 609044 HC_gene_0370_tx_8 6 + 608365 609044 . 1 680 0 -chrII 608435 609795 HC_gene_0703_tx_1 2 - 608435 609795 . 1 1361 0 -chrII 608620 609795 HC_gene_0703_tx_2 16 - 608620 609795 . 1 1176 0 -chrII 608713 609795 HC_gene_0703_tx_3 6 - 608713 609795 . 1 1083 0 -chrII 608815 609795 HC_gene_0703_tx_4 21 - 608815 609795 . 1 981 0 -chrII 608914 609795 HC_gene_0703_tx_5 13 - 608914 609795 . 1 882 0 -chrII 609896 610567 HC_gene_0371_tx_1 31 + 609896 610567 . 1 672 0 -chrII 609896 610620 HC_gene_0371_tx_2 15 + 609896 610620 . 1 725 0 -chrII 609896 610973 HC_gene_0371_tx_3 3 + 609896 610973 . 1 1078 0 -chrII 609896 611992 HC_gene_0371_tx_4 1 + 609896 611992 . 1 2097 0 -chrII 610487 611925 HC_gene_0704_tx_1 21 - 610487 611925 . 1 1439 0 -chrII 612053 612316 HC_gene_0705_tx_1 207 - 612053 612316 . 1 264 0 -chrII 612053 612433 HC_gene_0705_tx_2 32 - 612053 612433 . 1 381 0 -chrII 612053 612517 HC_gene_0705_tx_3 291 - 612053 612517 . 1 465 0 -chrII 612053 612774 HC_gene_0705_tx_4 151 - 612053 612774 . 1 722 0 -chrII 612053 612913 HC_gene_0705_tx_5 201 - 612053 612913 . 1 861 0 -chrII 612053 612913 HC_gene_0705_tx_6 1 - 612053 612913 . 2 633,190 0,671 -chrII 612053 612976 HC_gene_0705_tx_7 132 - 612053 612976 . 1 924 0 -chrII 612053 613228 HC_gene_0705_tx_8 63 - 612053 613228 . 1 1176 0 -chrII 612053 613303 HC_gene_0705_tx_9 1 - 612053 613303 . 2 294,404 0,847 -chrII 612053 613447 HC_gene_0705_tx_10 239 - 612053 613447 . 1 1395 0 -chrII 612053 613447 HC_gene_0705_tx_11 1 - 612053 613447 . 2 927,385 0,1010 -chrII 612053 613447 HC_gene_0705_tx_12 1 - 612053 613447 . 2 781,399 0,996 -chrII 612053 613447 HC_gene_0705_tx_13 1 - 612053 613447 . 2 123,1215 0,180 -chrII 612053 613447 HC_gene_0705_tx_14 1 - 612053 613447 . 2 999,316 0,1079 -chrII 612053 613447 HC_gene_0705_tx_15 1 - 612053 613447 . 2 881,469 0,926 -chrII 612053 613652 HC_gene_0705_tx_16 78 - 612053 613652 . 1 1600 0 -chrII 612053 613652 HC_gene_0705_tx_17 1 - 612053 613652 . 2 571,142 0,1458 -chrII 612053 613847 HC_gene_0705_tx_18 31 - 612053 613847 . 1 1795 0 -chrII 612053 613915 HC_gene_0705_tx_19 1 - 612053 613915 . 2 806,959 0,904 -chrII 612053 613926 HC_gene_0705_tx_20 1 - 612053 613926 . 2 834,970 0,904 -chrII 612053 613927 HC_gene_0705_tx_21 1 - 612053 613927 . 2 312,1508 0,367 -chrII 612053 613943 HC_gene_0705_tx_22 876 - 612053 613943 . 1 1891 0 -chrII 612053 613943 HC_gene_0705_tx_23 1 - 612053 613943 . 2 1217,389 0,1502 -chrII 612053 613943 HC_gene_0705_tx_24 1 - 612053 613943 . 2 1554,204 0,1687 -chrII 612053 613943 HC_gene_0705_tx_25 1 - 612053 613943 . 2 1061,317 0,1574 -chrII 612053 613943 HC_gene_0705_tx_26 1 - 612053 613943 . 2 55,1220 0,671 -chrII 612053 613943 HC_gene_0705_tx_27 1 - 612053 613943 . 2 948,897 0,994 -chrII 612053 613943 HC_gene_0705_tx_28 1 - 612053 613943 . 2 1180,644 0,1247 -chrII 612053 613943 HC_gene_0705_tx_29 1 - 612053 613943 . 2 840,993 0,898 -chrII 612053 613943 HC_gene_0705_tx_30 1 - 612053 613943 . 2 579,1220 0,671 -chrII 612053 613943 HC_gene_0705_tx_31 1 - 612053 613943 . 2 853,957 0,934 -chrII 612053 613943 HC_gene_0705_tx_32 1 - 612053 613943 . 2 1625,155 0,1736 -chrII 612053 613943 HC_gene_0705_tx_33 1 - 612053 613943 . 2 1145,62 0,1829 -chrII 612053 613943 HC_gene_0705_tx_34 1 - 612053 613943 . 2 840,957 0,934 -chrII 612053 613943 HC_gene_0705_tx_35 1 - 612053 613943 . 2 1180,612 0,1279 -chrII 612053 613943 HC_gene_0705_tx_36 1 - 612053 613943 . 2 931,897 0,994 -chrII 612053 613943 HC_gene_0705_tx_37 1 - 612053 613943 . 2 1035,788 0,1103 -chrII 612053 613943 HC_gene_0705_tx_38 1 - 612053 613943 . 2 840,991 0,900 -chrII 612053 613943 HC_gene_0705_tx_39 1 - 612053 613943 . 2 1153,674 0,1217 -chrII 612053 613943 HC_gene_0705_tx_40 1 - 612053 613943 . 2 1069,317 0,1574 -chrII 612053 613943 HC_gene_0705_tx_41 1 - 612053 613943 . 3 544,14,616 0,926,1275 -chrII 612053 613943 HC_gene_0705_tx_42 1 - 612053 613943 . 2 840,936 0,955 -chrII 612053 613943 HC_gene_0705_tx_43 1 - 612053 613943 . 2 789,1044 0,847 -chrII 612053 615877 HC_gene_0705_tx_44 1 - 612053 615877 . 2 2986,444 0,3381 -chrII 613882 615851 HC_gene_0705_tx_45 1 - 613882 615851 . 1 1970 0 -chrII 613984 614717 HC_gene_0705_tx_47 1 - 613984 614717 . 1 734 0 -chrII 613984 614981 HC_gene_0705_tx_48 1 - 613984 614981 . 1 998 0 -chrII 613984 615877 HC_gene_0705_tx_46 1 - 613984 615877 . 1 1894 0 -chrII 614447 614880 HC_gene_0372_tx_1 16 + 614447 614880 . 1 434 0 -chrII 614447 615225 HC_gene_0372_tx_2 3 + 614447 615225 . 1 779 0 -chrII 614545 614880 HC_gene_0372_tx_3 2 + 614545 614880 . 1 336 0 -chrII 614565 614911 HC_gene_0705_tx_49 1 - 614565 614911 . 1 347 0 -chrII 614565 615877 HC_gene_0705_tx_50 4 - 614565 615877 . 1 1313 0 -chrII 614740 614981 HC_gene_0705_tx_64 1 - 614740 614981 . 1 242 0 -chrII 614744 614981 HC_gene_0705_tx_65 1 - 614744 614981 . 1 238 0 -chrII 614744 615877 HC_gene_0705_tx_51 2 - 614744 615877 . 1 1134 0 -chrII 614745 615877 HC_gene_0705_tx_52 1 - 614745 615877 . 1 1133 0 -chrII 614748 615877 HC_gene_0705_tx_53 1 - 614748 615877 . 1 1130 0 -chrII 614751 615877 HC_gene_0705_tx_54 1 - 614751 615877 . 1 1127 0 -chrII 614752 615877 HC_gene_0705_tx_55 1 - 614752 615877 . 1 1126 0 -chrII 614755 615877 HC_gene_0705_tx_56 1 - 614755 615877 . 1 1123 0 -chrII 614758 615877 HC_gene_0705_tx_57 1 - 614758 615877 . 2 439,619 0,501 -chrII 614762 615877 HC_gene_0705_tx_58 2 - 614762 615877 . 1 1116 0 -chrII 614768 615877 HC_gene_0705_tx_59 1 - 614768 615877 . 1 1110 0 -chrII 614770 615877 HC_gene_0705_tx_60 1 - 614770 615877 . 1 1108 0 -chrII 614781 615877 HC_gene_0705_tx_61 1 - 614781 615877 . 1 1097 0 -chrII 614782 615877 HC_gene_0705_tx_62 1 - 614782 615877 . 1 1096 0 -chrII 614785 615877 HC_gene_0705_tx_63 1 - 614785 615877 . 1 1093 0 -chrII 615405 616445 MC_gene_0373_tx_1 1 + 615405 616445 . 1 1041 0 -chrII 615627 617546 MC_gene_0373_tx_2 1 + 615627 617546 . 1 1920 0 -chrII 615762 616405 MC_gene_0373_tx_3 1 + 615762 616405 . 1 644 0 -chrII 616035 618309 HC_gene_0706_tx_1 1 - 616035 618309 . 2 915,1248 0,1027 -chrII 616035 618309 HC_gene_0706_tx_2 4 - 616035 618309 . 1 2275 0 -chrII 616035 618376 HC_gene_0706_tx_3 1 - 616035 618376 . 1 2342 0 -chrII 616035 618602 HC_gene_0706_tx_4 18 - 616035 618602 . 1 2568 0 -chrII 616035 618602 HC_gene_0706_tx_5 1 - 616035 618602 . 2 991,1491 0,1077 -chrII 616035 618602 HC_gene_0706_tx_6 1 - 616035 618602 . 2 970,1526 0,1042 -chrII 618815 620488 HC_gene_0374_tx_1 70 + 618815 620488 . 1 1674 0 -chrII 618815 620488 HC_gene_0374_tx_2 1 + 618815 620488 . 2 942,616 0,1058 -chrII 618815 620488 HC_gene_0374_tx_3 1 + 618815 620488 . 2 311,1298 0,376 -chrII 618815 620488 HC_gene_0374_tx_4 1 + 618815 620488 . 2 145,1475 0,199 -chrII 618815 620488 HC_gene_0374_tx_5 1 + 618815 620488 . 2 898,696 0,978 -chrII 618815 620488 HC_gene_0374_tx_6 1 + 618815 620488 . 2 934,669 0,1005 -chrII 618815 620488 HC_gene_0374_tx_7 1 + 618815 620488 . 2 500,1050 0,624 -chrII 618815 620564 HC_gene_0374_tx_8 5 + 618815 620564 . 1 1750 0 -chrII 618815 620564 HC_gene_0374_tx_9 1 + 618815 620564 . 2 977,692 0,1058 -chrII 618815 620564 HC_gene_0374_tx_10 1 + 618815 620564 . 2 937,723 0,1027 -chrII 618816 620488 HC_gene_0374_tx_11 1 + 618816 620488 . 2 806,778 0,895 -chrII 618846 620488 HC_gene_0374_tx_12 1 + 618846 620488 . 2 710,839 0,804 -chrII 619131 620488 HC_gene_0374_tx_13 7 + 619131 620488 . 1 1358 0 -chrII 619286 620488 HC_gene_0374_tx_14 11 + 619286 620488 . 1 1203 0 -chrII 619286 620564 HC_gene_0374_tx_15 1 + 619286 620564 . 1 1279 0 -chrII 619383 620488 HC_gene_0374_tx_16 7 + 619383 620488 . 1 1106 0 -chrII 619383 620564 HC_gene_0374_tx_17 2 + 619383 620564 . 1 1182 0 -chrII 619545 620488 HC_gene_0374_tx_18 9 + 619545 620488 . 1 944 0 -chrII 619545 620564 HC_gene_0374_tx_19 2 + 619545 620564 . 1 1020 0 -chrII 619604 620488 HC_gene_0374_tx_20 7 + 619604 620488 . 1 885 0 -chrII 619768 620488 HC_gene_0374_tx_21 12 + 619768 620488 . 1 721 0 -chrII 619768 620564 HC_gene_0374_tx_22 1 + 619768 620564 . 1 797 0 -chrII 620816 622752 HC_gene_0375_tx_1 26 + 620816 622752 . 1 1937 0 -chrII 620816 622752 HC_gene_0375_tx_2 1 + 620816 622752 . 2 1025,848 0,1089 -chrII 622663 623242 HC_gene_0707_tx_1 2 - 622663 623242 . 1 580 0 -chrII 623439 624190 HC_gene_0376_tx_1 50 + 623439 624190 . 1 752 0 -chrII 623439 624488 HC_gene_0376_tx_2 7 + 623439 624488 . 1 1050 0 -chrII 624150 624761 HC_gene_0708_tx_1 2 - 624150 624761 . 1 612 0 -chrII 624244 624708 HC_gene_0708_tx_2 19 - 624244 624708 . 1 465 0 -chrII 624244 624761 HC_gene_0708_tx_3 50 - 624244 624761 . 1 518 0 -chrII 624244 624761 HC_gene_0708_tx_4 1 - 624244 624761 . 2 279,164 0,354 -chrII 624244 624858 HC_gene_0708_tx_5 7 - 624244 624858 . 1 615 0 -chrII 624244 625058 HC_gene_0709_tx_1 9 - 624244 625058 . 1 815 0 -chrII 624317 624708 HC_gene_0708_tx_6 1 - 624317 624708 . 1 392 0 -chrII 624317 624761 HC_gene_0708_tx_7 1 - 624317 624761 . 1 445 0 -chrII 624317 624858 HC_gene_0708_tx_8 1 - 624317 624858 . 1 542 0 -chrII 624389 624761 HC_gene_0708_tx_9 1 - 624389 624761 . 1 373 0 -chrII 624392 625530 LC_gene_0377_tx_1 1 + 624392 625530 . 1 1139 0 -chrII 625761 628471 HC_gene_0378_tx_1 1 + 625761 628471 . 2 900,1742 0,969 -chrII 625761 628472 HC_gene_0378_tx_2 1 + 625761 628472 . 1 2712 0 -chrII 625761 628474 HC_gene_0378_tx_3 1 + 625761 628474 . 1 2714 0 -chrII 625761 628475 HC_gene_0378_tx_4 2 + 625761 628475 . 1 2715 0 -chrII 625761 628476 HC_gene_0378_tx_5 1 + 625761 628476 . 1 2716 0 -chrII 625761 628479 HC_gene_0378_tx_6 1 + 625761 628479 . 1 2719 0 -chrII 625761 628480 HC_gene_0378_tx_7 4 + 625761 628480 . 1 2720 0 -chrII 625761 628481 HC_gene_0378_tx_8 1 + 625761 628481 . 1 2721 0 -chrII 625761 628485 HC_gene_0378_tx_9 1 + 625761 628485 . 1 2725 0 -chrII 625761 628487 HC_gene_0378_tx_10 1 + 625761 628487 . 1 2727 0 -chrII 625761 628491 HC_gene_0378_tx_11 1 + 625761 628491 . 1 2731 0 -chrII 628811 629774 HC_gene_0710_tx_1 2 - 628811 629774 . 1 964 0 -chrII 628988 632169 HC_gene_0379_tx_1 4 + 628988 632169 . 1 3182 0 -chrII 629142 632169 HC_gene_0379_tx_2 4 + 629142 632169 . 1 3028 0 -chrII 629260 632169 HC_gene_0379_tx_3 1 + 629260 632169 . 1 2910 0 -chrII 630147 631984 LC_gene_0711_tx_1 1 - 630147 631984 . 1 1838 0 -chrII 631633 632169 HC_gene_0379_tx_4 5 + 631633 632169 . 1 537 0 -chrII 632092 632510 HC_gene_0712_tx_1 6 - 632092 632510 . 1 419 0 -chrII 632092 633426 HC_gene_0712_tx_2 10 - 632092 633426 . 1 1335 0 -chrII 632092 633426 HC_gene_0712_tx_3 1 - 632092 633426 . 2 969,298 0,1037 -chrII 633574 634991 HC_gene_0380_tx_1 74 + 633574 634991 . 1 1418 0 -chrII 633574 634991 HC_gene_0380_tx_2 1 + 633574 634991 . 2 822,519 0,899 -chrII 633574 634991 HC_gene_0380_tx_3 1 + 633574 634991 . 2 257,1035 0,383 -chrII 633574 634991 HC_gene_0380_tx_4 1 + 633574 634991 . 2 816,519 0,899 -chrII 633574 634991 HC_gene_0380_tx_5 1 + 633574 634991 . 2 662,710 0,708 -chrII 633574 634991 HC_gene_0380_tx_6 1 + 633574 634991 . 2 651,720 0,698 -chrII 633574 634991 HC_gene_0380_tx_7 1 + 633574 634991 . 2 841,519 0,899 -chrII 634599 634991 HC_gene_0380_tx_8 20 + 634599 634991 . 1 393 0 -chrII 634798 635422 LC_gene_0713_tx_1 1 - 634798 635422 . 1 625 0 -chrII 635093 636586 HC_gene_0381_tx_1 5 + 635093 636586 . 1 1494 0 -chrII 635093 636656 HC_gene_0381_tx_2 50 + 635093 636656 . 1 1564 0 -chrII 635093 636656 HC_gene_0381_tx_3 1 + 635093 636656 . 2 669,733 0,831 -chrII 635093 636656 HC_gene_0381_tx_4 1 + 635093 636656 . 2 183,1050 0,514 -chrII 635374 636586 HC_gene_0381_tx_5 1 + 635374 636586 . 1 1213 0 -chrII 635374 636656 HC_gene_0381_tx_6 8 + 635374 636656 . 1 1283 0 -chrII 636549 641976 MC_gene_0714_tx_1 1 - 636549 641976 . 1 5428 0 -chrII 636685 639940 MC_gene_0714_tx_2 1 - 636685 639940 . 1 3256 0 -chrII 639202 641944 MC_gene_0714_tx_3 1 - 639202 641944 . 1 2743 0 -chrII 640157 642353 LC_gene_0382_tx_1 1 + 640157 642353 . 1 2197 0 -chrII 642292 642354 HC_gene_0715_tx_1 2 - 642292 642354 . 1 63 0 -chrII 642292 642670 HC_gene_0715_tx_2 79 - 642292 642670 . 1 379 0 -chrII 643466 645003 MC_gene_0716_tx_1 1 - 643466 645003 . 1 1538 0 -chrII 644130 644493 MC_gene_0383_tx_1 1 + 644130 644493 . 1 364 0 -chrII 645327 646224 HC_gene_0384_tx_1 24 + 645327 646224 . 1 898 0 -chrII 645515 646224 HC_gene_0384_tx_2 85 + 645515 646224 . 1 710 0 -chrII 646032 647136 HC_gene_0717_tx_1 2 - 646032 647136 . 1 1105 0 -chrII 646032 647230 HC_gene_0717_tx_2 29 - 646032 647230 . 1 1199 0 -chrII 646032 647230 HC_gene_0717_tx_3 1 - 646032 647230 . 2 991,138 0,1061 -chrII 647479 650051 HC_gene_0385_tx_1 1 + 647479 650051 . 1 2573 0 -chrII 647479 650113 HC_gene_0385_tx_2 18 + 647479 650113 . 1 2635 0 -chrII 647479 650113 HC_gene_0385_tx_3 1 + 647479 650113 . 2 1357,734 0,1901 -chrII 647479 650113 HC_gene_0385_tx_4 1 + 647479 650113 . 2 1479,991 0,1644 -chrII 647769 650113 HC_gene_0385_tx_5 1 + 647769 650113 . 1 2345 0 -chrII 648306 650113 HC_gene_0385_tx_6 3 + 648306 650113 . 1 1808 0 -chrII 649324 650113 HC_gene_0385_tx_7 20 + 649324 650113 . 1 790 0 -chrII 650297 651390 HC_gene_0386_tx_1 9 + 650297 651390 . 1 1094 0 -chrII 650309 651390 HC_gene_0386_tx_2 1 + 650309 651390 . 1 1082 0 -chrII 650354 651051 MC_gene_0718_tx_1 1 - 650354 651051 . 1 698 0 -chrII 650392 651144 MC_gene_0718_tx_2 1 - 650392 651144 . 1 753 0 -chrII 651237 652697 MC_gene_0719_tx_1 1 - 651237 652697 . 1 1461 0 -chrII 651335 653192 HC_gene_0387_tx_1 21 + 651335 653192 . 1 1858 0 -chrII 651443 653192 HC_gene_0387_tx_2 1 + 651443 653192 . 2 606,1096 0,654 -chrII 651805 653192 HC_gene_0387_tx_3 4 + 651805 653192 . 1 1388 0 -chrII 651805 653192 HC_gene_0387_tx_4 1 + 651805 653192 . 2 98,997 0,391 -chrII 652068 653192 HC_gene_0387_tx_5 8 + 652068 653192 . 1 1125 0 -chrII 652297 653192 HC_gene_0387_tx_6 13 + 652297 653192 . 1 896 0 -chrII 652297 653192 HC_gene_0387_tx_7 1 + 652297 653192 . 2 455,373 0,523 -chrII 652502 653192 HC_gene_0387_tx_8 3 + 652502 653192 . 1 691 0 -chrII 652705 653192 HC_gene_0387_tx_9 12 + 652705 653192 . 1 488 0 -chrII 653061 654510 MC_gene_0720_tx_1 1 - 653061 654510 . 1 1450 0 -chrII 653314 655437 HC_gene_0388_tx_1 3 + 653314 655437 . 2 55,1985 0,139 -chrII 653314 655437 HC_gene_0388_tx_2 1 + 653314 655437 . 1 2124 0 -chrII 653683 655437 HC_gene_0388_tx_3 4 + 653683 655437 . 1 1755 0 -chrII 655000 655257 MC_gene_0721_tx_1 1 - 655000 655257 . 1 258 0 -chrII 655304 657030 HC_gene_0722_tx_1 1 - 655304 657030 . 1 1727 0 -chrII 655304 657631 HC_gene_0722_tx_3 1 - 655304 657631 . 2 991,1199 0,1129 -chrII 655304 657631 HC_gene_0722_tx_4 1 - 655304 657631 . 2 1063,1112 0,1216 -chrII 655304 657631 HC_gene_0722_tx_5 4 - 655304 657631 . 1 2328 0 -chrII 655470 657030 HC_gene_0722_tx_2 1 - 655470 657030 . 1 1561 0 -chrII 655470 657631 HC_gene_0722_tx_6 3 - 655470 657631 . 1 2162 0 -chrII 657784 658721 HC_gene_0389_tx_1 47 + 657784 658721 . 1 938 0 -chrII 658564 659338 HC_gene_0723_tx_1 11 - 658564 659338 . 1 775 0 -chrII 658564 659405 HC_gene_0723_tx_2 22 - 658564 659405 . 1 842 0 -chrII 658564 659479 HC_gene_0723_tx_3 7 - 658564 659479 . 1 916 0 -chrII 658564 659860 HC_gene_0723_tx_4 6 - 658564 659860 . 1 1297 0 -chrII 658564 660932 HC_gene_0723_tx_5 5 - 658564 660932 . 1 2369 0 -chrII 658564 661833 HC_gene_0723_tx_6 1 - 658564 661833 . 1 3270 0 -chrII 658564 662324 HC_gene_0723_tx_7 1 - 658564 662324 . 2 2244,1403 0,2358 -chrII 658564 662338 HC_gene_0723_tx_8 28 - 658564 662338 . 1 3775 0 -chrII 658564 662513 HC_gene_0723_tx_9 2 - 658564 662513 . 1 3950 0 -chrII 662771 664760 HC_gene_0724_tx_1 12 - 662771 664760 . 1 1990 0 -chrII 662843 664760 HC_gene_0724_tx_2 9 - 662843 664760 . 1 1918 0 -chrII 664907 665616 HC_gene_0725_tx_1 57 - 664907 665616 . 1 710 0 -chrII 664907 665683 HC_gene_0725_tx_2 58 - 664907 665683 . 1 777 0 -chrII 664907 665778 HC_gene_0725_tx_3 21 - 664907 665778 . 1 872 0 -chrII 664907 666040 HC_gene_0725_tx_7 30 - 664907 666040 . 1 1134 0 -chrII 664907 666459 HC_gene_0725_tx_9 304 - 664907 666459 . 1 1553 0 -chrII 664907 666459 HC_gene_0725_tx_10 1 - 664907 666459 . 2 925,467 0,1086 -chrII 664907 666459 HC_gene_0725_tx_11 1 - 664907 666459 . 2 995,393 0,1160 -chrII 664907 666459 HC_gene_0725_tx_12 1 - 664907 666459 . 2 378,1095 0,458 -chrII 664907 666459 HC_gene_0725_tx_13 1 - 664907 666459 . 2 66,1430 0,123 -chrII 664907 666459 HC_gene_0725_tx_14 1 - 664907 666459 . 2 56,1362 0,191 -chrII 664907 666459 HC_gene_0725_tx_15 1 - 664907 666459 . 2 77,1430 0,123 -chrII 664907 666459 HC_gene_0725_tx_16 1 - 664907 666459 . 2 64,1430 0,123 -chrII 664907 666459 HC_gene_0725_tx_17 1 - 664907 666459 . 2 66,1378 0,175 -chrII 664907 666459 HC_gene_0725_tx_18 1 - 664907 666459 . 2 56,1337 0,216 -chrII 664907 666459 HC_gene_0725_tx_19 1 - 664907 666459 . 2 887,616 0,937 -chrII 664907 666459 HC_gene_0725_tx_20 1 - 664907 666459 . 2 114,1337 0,216 -chrII 664907 666459 HC_gene_0725_tx_21 1 - 664907 666459 . 2 754,677 0,876 -chrII 664974 665476 LC_gene_0390_tx_1 1 + 664974 665476 . 1 503 0 -chrII 665000 665616 HC_gene_0725_tx_4 4 - 665000 665616 . 1 617 0 -chrII 665000 665683 HC_gene_0725_tx_5 12 - 665000 665683 . 1 684 0 -chrII 665000 665778 HC_gene_0725_tx_6 1 - 665000 665778 . 1 779 0 -chrII 665000 666040 HC_gene_0725_tx_8 5 - 665000 666040 . 1 1041 0 -chrII 665000 666459 HC_gene_0725_tx_22 90 - 665000 666459 . 1 1460 0 -chrII 665000 666459 HC_gene_0725_tx_23 1 - 665000 666459 . 2 31,1364 0,96 -chrII 665000 666459 HC_gene_0725_tx_24 1 - 665000 666459 . 2 47,1362 0,98 -chrII 665000 666459 HC_gene_0725_tx_25 1 - 665000 666459 . 2 817,269 0,1191 -chrII 666102 666683 LC_gene_0391_tx_1 1 + 666102 666683 . 1 582 0 -chrII 666604 667189 HC_gene_0726_tx_1 19 - 666604 667189 . 1 586 0 -chrII 666604 667189 HC_gene_0726_tx_2 1 - 666604 667189 . 2 267,182 0,404 -chrII 666604 667355 HC_gene_0726_tx_3 12 - 666604 667355 . 1 752 0 -chrII 666604 667620 HC_gene_0726_tx_4 6 - 666604 667620 . 1 1017 0 -chrII 666604 668022 HC_gene_0726_tx_5 6 - 666604 668022 . 1 1419 0 -chrII 666604 668394 HC_gene_0726_tx_6 39 - 666604 668394 . 1 1791 0 -chrII 668102 668483 LC_gene_0392_tx_1 1 + 668102 668483 . 1 382 0 -chrII 668406 670305 HC_gene_0727_tx_1 1 - 668406 670305 . 1 1900 0 -chrII 668406 670318 HC_gene_0727_tx_2 9 - 668406 670318 . 1 1913 0 -chrII 670491 673594 HC_gene_0393_tx_1 2 + 670491 673594 . 1 3104 0 -chrII 670615 673594 HC_gene_0393_tx_2 1 + 670615 673594 . 1 2980 0 -chrII 673440 674294 HC_gene_0728_tx_1 5 - 673440 674294 . 1 855 0 -chrII 673440 674760 HC_gene_0728_tx_3 1 - 673440 674760 . 1 1321 0 -chrII 673440 675193 HC_gene_0728_tx_5 9 - 673440 675193 . 1 1754 0 -chrII 673440 675193 HC_gene_0728_tx_6 1 - 673440 675193 . 2 1064,585 0,1169 -chrII 673496 674294 HC_gene_0728_tx_2 6 - 673496 674294 . 1 799 0 -chrII 673496 674760 HC_gene_0728_tx_4 7 - 673496 674760 . 1 1265 0 -chrII 673496 675193 HC_gene_0728_tx_7 19 - 673496 675193 . 1 1698 0 -chrII 673931 675193 HC_gene_0728_tx_8 2 - 673931 675193 . 1 1263 0 -chrII 675313 676282 HC_gene_0394_tx_1 23 + 675313 676282 . 1 970 0 -chrII 675313 676391 HC_gene_0394_tx_2 10 + 675313 676391 . 1 1079 0 -chrII 675691 676282 HC_gene_0394_tx_3 7 + 675691 676282 . 1 592 0 -chrII 675691 676391 HC_gene_0394_tx_4 5 + 675691 676391 . 1 701 0 -chrII 675834 676282 HC_gene_0394_tx_5 8 + 675834 676282 . 1 449 0 -chrII 675834 676391 HC_gene_0394_tx_6 7 + 675834 676391 . 1 558 0 -chrII 675852 677234 HC_gene_0729_tx_1 1 - 675852 677234 . 1 1383 0 -chrII 675852 679231 HC_gene_0729_tx_2 2 - 675852 679231 . 1 3380 0 -chrII 676225 677234 HC_gene_0729_tx_6 7 - 676225 677234 . 1 1010 0 -chrII 676225 679104 HC_gene_0729_tx_3 2 - 676225 679104 . 1 2880 0 -chrII 676225 679231 HC_gene_0729_tx_4 9 - 676225 679231 . 1 3007 0 -chrII 676225 679231 HC_gene_0729_tx_5 1 - 676225 679231 . 2 1255,674 0,2333 -chrII 677647 679441 LC_gene_0395_tx_1 1 + 677647 679441 . 1 1795 0 -chrII 679460 679654 HC_gene_0730_tx_1 5 - 679460 679654 . 1 195 0 -chrII 679460 680077 HC_gene_0730_tx_2 9 - 679460 680077 . 2 483,38 0,580 -chrII 679460 680077 HC_gene_0730_tx_3 13 - 679460 680077 . 1 618 0 -chrII 679460 680077 HC_gene_0730_tx_4 1 - 679460 680077 . 3 22,381,38 0,102,580 -chrII 679513 680077 HC_gene_0730_tx_5 3 - 679513 680077 . 2 430,38 0,527 -chrII 679513 680077 HC_gene_0730_tx_6 1 - 679513 680077 . 1 565 0 -chrII 679513 680077 HC_gene_0730_tx_7 1 - 679513 680077 . 2 420,47 0,518 -chrII 680301 680636 HC_gene_0396_tx_1 7 + 680301 680636 . 1 336 0 -chrII 680301 680707 HC_gene_0396_tx_2 79 + 680301 680707 . 1 407 0 -chrII 680358 681862 HC_gene_0731_tx_1 3 - 680358 681862 . 1 1505 0 -chrII 680559 681001 HC_gene_0731_tx_4 1 - 680559 681001 . 1 443 0 -chrII 680559 681448 HC_gene_0731_tx_5 1 - 680559 681448 . 1 890 0 -chrII 680559 681862 HC_gene_0731_tx_2 6 - 680559 681862 . 1 1304 0 -chrII 680559 681862 HC_gene_0731_tx_3 1 - 680559 681862 . 2 573,667 0,637 -chrII 680681 681951 LC_gene_0397_tx_1 1 + 680681 681951 . 1 1271 0 -chrII 682128 682582 HC_gene_0732_tx_1 5 - 682128 682582 . 1 455 0 -chrII 682128 682674 HC_gene_0732_tx_2 9 - 682128 682674 . 1 547 0 -chrII 682128 683017 HC_gene_0732_tx_3 1 - 682128 683017 . 1 890 0 -chrII 682128 683148 HC_gene_0732_tx_4 31 - 682128 683148 . 1 1021 0 -chrII 682221 682525 LC_gene_0398_tx_1 1 + 682221 682525 . 1 305 0 -chrII 683356 684802 HC_gene_0399_tx_1 25 + 683356 684802 . 1 1447 0 -chrII 683356 684802 HC_gene_0399_tx_2 1 + 683356 684802 . 2 263,837 0,610 -chrII 683356 684802 HC_gene_0399_tx_3 1 + 683356 684802 . 2 394,918 0,529 -chrII 683435 684802 HC_gene_0399_tx_4 2 + 683435 684802 . 1 1368 0 -chrII 684947 685462 HC_gene_0400_tx_1 158 + 684947 685462 . 1 516 0 -chrII 685152 685462 HC_gene_0400_tx_2 17 + 685152 685462 . 1 311 0 -chrII 685371 685775 HC_gene_0733_tx_1 32 - 685371 685775 . 1 405 0 -chrII 685371 685830 HC_gene_0733_tx_2 5 - 685371 685830 . 1 460 0 -chrII 685371 685997 HC_gene_0733_tx_3 63 - 685371 685997 . 1 627 0 -chrII 685371 686218 HC_gene_0733_tx_4 16 - 685371 686218 . 1 848 0 -chrII 685371 686638 HC_gene_0733_tx_5 200 - 685371 686638 . 1 1268 0 -chrII 685371 686638 HC_gene_0733_tx_6 1 - 685371 686638 . 2 981,111 0,1157 -chrII 685371 686638 HC_gene_0733_tx_7 1 - 685371 686638 . 2 61,1121 0,147 -chrII 685371 686638 HC_gene_0733_tx_8 1 - 685371 686638 . 2 61,1151 0,117 -chrII 685371 686638 HC_gene_0733_tx_9 1 - 685371 686638 . 2 50,1135 0,133 -chrII 685371 686638 HC_gene_0733_tx_10 1 - 685371 686638 . 2 382,739 0,529 -chrII 686819 690350 HC_gene_0401_tx_1 5 + 686819 690350 . 1 3532 0 -chrII 689075 691732 HC_gene_0734_tx_1 1 - 689075 691732 . 2 937,1615 0,1043 -chrII 689140 690518 HC_gene_0734_tx_2 1 - 689140 690518 . 1 1379 0 -chrII 690266 690518 HC_gene_0734_tx_3 7 - 690266 690518 . 1 253 0 -chrII 690266 691475 HC_gene_0734_tx_4 7 - 690266 691475 . 1 1210 0 -chrII 690266 691732 HC_gene_0734_tx_5 49 - 690266 691732 . 1 1467 0 -chrII 690266 691732 HC_gene_0734_tx_6 1 - 690266 691732 . 2 583,802 0,665 -chrII 690266 691732 HC_gene_0734_tx_7 1 - 690266 691732 . 2 569,805 0,662 -chrII 691924 694588 HC_gene_0402_tx_1 11 + 691924 694588 . 1 2665 0 -chrII 694614 694972 HC_gene_0735_tx_1 1 - 694614 694972 . 1 359 0 -chrII 694614 695625 HC_gene_0735_tx_2 13 - 694614 695625 . 1 1012 0 -chrII 694614 696421 HC_gene_0735_tx_3 6 - 694614 696421 . 1 1808 0 -chrII 694614 697070 HC_gene_0735_tx_4 8 - 694614 697070 . 1 2457 0 -chrII 694614 697070 HC_gene_0735_tx_5 1 - 694614 697070 . 2 699,1626 0,831 -chrII 694614 697075 HC_gene_0735_tx_6 1 - 694614 697075 . 2 699,1459 0,1003 -chrII 694614 697376 HC_gene_0735_tx_7 24 - 694614 697376 . 1 2763 0 -chrII 694614 697376 HC_gene_0735_tx_8 1 - 694614 697376 . 2 1166,1327 0,1436 -chrII 697842 698368 HC_gene_0403_tx_1 7 + 697842 698368 . 1 527 0 -chrII 697842 698748 HC_gene_0403_tx_2 7 + 697842 698748 . 1 907 0 -chrII 698031 698368 HC_gene_0403_tx_3 1 + 698031 698368 . 1 338 0 -chrII 698031 698748 HC_gene_0403_tx_4 4 + 698031 698748 . 1 718 0 -chrII 698070 700093 HC_gene_0736_tx_1 3 - 698070 700093 . 1 2024 0 -chrII 698241 700033 HC_gene_0736_tx_2 1 - 698241 700033 . 1 1793 0 -chrII 698241 700093 HC_gene_0736_tx_3 8 - 698241 700093 . 1 1853 0 -chrII 699214 700095 LC_gene_0404_tx_1 1 + 699214 700095 . 1 882 0 -chrII 700174 700384 MC_gene_0405_tx_1 1 + 700174 700384 . 1 211 0 -chrII 700264 702171 HC_gene_0737_tx_1 1 - 700264 702171 . 1 1908 0 -chrII 701861 702171 HC_gene_0737_tx_2 7 - 701861 702171 . 1 311 0 -chrII 702521 704085 HC_gene_0738_tx_1 11 - 702521 704085 . 1 1565 0 -chrII 703509 704389 MC_gene_0406_tx_1 1 + 703509 704389 . 1 881 0 -chrII 704466 706826 HC_gene_0739_tx_1 1 - 704466 706826 . 1 2361 0 -chrII 704510 705479 HC_gene_0407_tx_1 76 + 704510 705479 . 1 970 0 -chrII 704510 705708 HC_gene_0407_tx_2 1 + 704510 705708 . 1 1199 0 -chrII 704510 706894 HC_gene_0407_tx_3 3 + 704510 706894 . 1 2385 0 -chrII 705116 706826 HC_gene_0739_tx_2 2 - 705116 706826 . 1 1711 0 -chrII 705257 706826 HC_gene_0739_tx_3 29 - 705257 706826 . 1 1570 0 -chrII 705257 706826 HC_gene_0739_tx_4 1 - 705257 706826 . 2 1048,412 0,1158 -chrII 705362 706826 HC_gene_0739_tx_5 34 - 705362 706826 . 1 1465 0 -chrII 707321 708205 HC_gene_0408_tx_1 19 + 707321 708205 . 1 885 0 -chrII 707491 708205 HC_gene_0408_tx_2 249 + 707491 708205 . 1 715 0 -chrII 707697 708205 HC_gene_0408_tx_3 39 + 707697 708205 . 1 509 0 -chrII 708040 708653 HC_gene_0740_tx_1 17 - 708040 708653 . 1 614 0 -chrII 708040 709271 HC_gene_0740_tx_2 7 - 708040 709271 . 1 1232 0 -chrII 708040 710869 HC_gene_0740_tx_3 1 - 708040 710869 . 2 1967,681 0,2149 -chrII 708040 711384 HC_gene_0740_tx_4 3 - 708040 711384 . 1 3345 0 -chrII 711555 712845 HC_gene_0409_tx_1 62 + 711555 712845 . 1 1291 0 -chrII 711555 712845 HC_gene_0409_tx_2 1 + 711555 712845 . 2 769,427 0,864 -chrII 711555 712845 HC_gene_0409_tx_3 1 + 711555 712845 . 2 1206,39 0,1252 -chrII 712750 714477 HC_gene_0741_tx_1 12 - 712750 714477 . 1 1728 0 -chrII 712750 714477 HC_gene_0741_tx_2 1 - 712750 714477 . 2 646,1008 0,720 -chrII 712750 714477 HC_gene_0741_tx_3 1 - 712750 714477 . 2 794,833 0,895 -chrII 712750 714477 HC_gene_0741_tx_4 1 - 712750 714477 . 2 751,884 0,844 -chrII 712885 714477 HC_gene_0741_tx_5 42 - 712885 714477 . 1 1593 0 -chrII 712885 714477 HC_gene_0741_tx_6 1 - 712885 714477 . 2 659,881 0,712 -chrII 712885 714477 HC_gene_0741_tx_7 2 - 712885 714477 . 2 659,829 0,764 -chrII 712885 714477 HC_gene_0741_tx_8 1 - 712885 714477 . 2 680,871 0,722 -chrII 712885 714477 HC_gene_0741_tx_9 1 - 712885 714477 . 2 751,793 0,800 -chrII 712885 714477 HC_gene_0741_tx_10 1 - 712885 714477 . 2 893,413 0,1180 -chrII 712885 714477 HC_gene_0741_tx_11 1 - 712885 714477 . 2 638,884 0,709 -chrII 712885 714477 HC_gene_0741_tx_12 1 - 712885 714477 . 2 659,773 0,820 -chrII 712885 714477 HC_gene_0741_tx_13 1 - 712885 714477 . 2 62,1442 0,151 -chrII 714725 715471 HC_gene_0742_tx_1 23 - 714725 715471 . 1 747 0 -chrII 714725 715709 HC_gene_0742_tx_2 1 - 714725 715709 . 2 602,334 0,651 -chrII 714725 715709 HC_gene_0742_tx_3 11 - 714725 715709 . 1 985 0 -chrII 714725 716554 HC_gene_0742_tx_4 95 - 714725 716554 . 1 1830 0 -chrII 714725 716554 HC_gene_0742_tx_5 1 - 714725 716554 . 2 327,1393 0,437 -chrII 714725 716554 HC_gene_0742_tx_6 1 - 714725 716554 . 2 1087,353 0,1477 -chrII 715015 716546 MC_gene_0410_tx_1 1 + 715015 716546 . 1 1532 0 -chrII 716674 717235 HC_gene_0743_tx_1 2 - 716674 717235 . 1 562 0 -chrII 716674 717318 HC_gene_0743_tx_2 1 - 716674 717318 . 1 645 0 -chrII 716674 717633 HC_gene_0743_tx_89 2 - 716674 717633 . 1 960 0 -chrII 716674 717836 HC_gene_0743_tx_90 2 - 716674 717836 . 1 1163 0 -chrII 716674 718085 HC_gene_0743_tx_91 22 - 716674 718085 . 1 1412 0 -chrII 716674 718085 HC_gene_0743_tx_92 1 - 716674 718085 . 2 246,809 0,603 -chrII 716742 717235 HC_gene_0743_tx_3 1 - 716742 717235 . 1 494 0 -chrII 716742 717318 HC_gene_0743_tx_4 1 - 716742 717318 . 1 577 0 -chrII 716742 718085 HC_gene_0743_tx_93 3 - 716742 718085 . 1 1344 0 -chrII 716743 718085 HC_gene_0743_tx_94 1 - 716743 718085 . 1 1343 0 -chrII 716744 718085 HC_gene_0743_tx_95 1 - 716744 718085 . 1 1342 0 -chrII 716745 717235 HC_gene_0743_tx_5 1 - 716745 717235 . 1 491 0 -chrII 716746 717318 HC_gene_0743_tx_6 1 - 716746 717318 . 1 573 0 -chrII 716746 717633 HC_gene_0743_tx_96 1 - 716746 717633 . 1 888 0 -chrII 716746 718085 HC_gene_0743_tx_97 8 - 716746 718085 . 1 1340 0 -chrII 716747 718085 HC_gene_0743_tx_98 1 - 716747 718085 . 1 1339 0 -chrII 716748 717235 HC_gene_0743_tx_7 1 - 716748 717235 . 1 488 0 -chrII 716748 717318 HC_gene_0743_tx_8 2 - 716748 717318 . 1 571 0 -chrII 716748 717836 HC_gene_0743_tx_99 4 - 716748 717836 . 1 1089 0 -chrII 716748 718085 HC_gene_0743_tx_100 11 - 716748 718085 . 1 1338 0 -chrII 716749 717235 HC_gene_0743_tx_9 3 - 716749 717235 . 1 487 0 -chrII 716749 717318 HC_gene_0743_tx_10 6 - 716749 717318 . 1 570 0 -chrII 716749 717633 HC_gene_0743_tx_101 1 - 716749 717633 . 1 885 0 -chrII 716749 717836 HC_gene_0743_tx_102 3 - 716749 717836 . 1 1088 0 -chrII 716749 718085 HC_gene_0743_tx_103 21 - 716749 718085 . 1 1337 0 -chrII 716750 717235 HC_gene_0743_tx_11 1 - 716750 717235 . 1 486 0 -chrII 716750 718085 HC_gene_0743_tx_104 2 - 716750 718085 . 1 1336 0 -chrII 716751 717235 HC_gene_0743_tx_12 2 - 716751 717235 . 1 485 0 -chrII 716751 717318 HC_gene_0743_tx_13 1 - 716751 717318 . 1 568 0 -chrII 716751 717633 HC_gene_0743_tx_105 1 - 716751 717633 . 1 883 0 -chrII 716751 718085 HC_gene_0743_tx_106 6 - 716751 718085 . 1 1335 0 -chrII 716752 717235 HC_gene_0743_tx_14 1 - 716752 717235 . 1 484 0 -chrII 716752 718085 HC_gene_0743_tx_107 4 - 716752 718085 . 1 1334 0 -chrII 716753 717235 HC_gene_0743_tx_15 4 - 716753 717235 . 1 483 0 -chrII 716753 717633 HC_gene_0743_tx_108 2 - 716753 717633 . 1 881 0 -chrII 716753 718085 HC_gene_0743_tx_109 7 - 716753 718085 . 1 1333 0 -chrII 716754 718085 HC_gene_0743_tx_110 1 - 716754 718085 . 1 1332 0 -chrII 716755 717235 HC_gene_0743_tx_16 2 - 716755 717235 . 1 481 0 -chrII 716755 718085 HC_gene_0743_tx_111 2 - 716755 718085 . 1 1331 0 -chrII 716756 717318 HC_gene_0743_tx_17 1 - 716756 717318 . 1 563 0 -chrII 716756 718085 HC_gene_0743_tx_112 1 - 716756 718085 . 1 1330 0 -chrII 716757 717235 HC_gene_0743_tx_18 1 - 716757 717235 . 1 479 0 -chrII 716757 717318 HC_gene_0743_tx_19 1 - 716757 717318 . 1 562 0 -chrII 716757 718085 HC_gene_0743_tx_113 1 - 716757 718085 . 1 1329 0 -chrII 716757 718085 HC_gene_0743_tx_114 1 - 716757 718085 . 2 521,767 0,562 -chrII 716758 717235 HC_gene_0743_tx_20 1 - 716758 717235 . 1 478 0 -chrII 716758 717633 HC_gene_0743_tx_115 1 - 716758 717633 . 1 876 0 -chrII 716758 718085 HC_gene_0743_tx_116 10 - 716758 718085 . 1 1328 0 -chrII 716759 717235 HC_gene_0743_tx_21 1 - 716759 717235 . 1 477 0 -chrII 716759 717318 HC_gene_0743_tx_22 3 - 716759 717318 . 1 560 0 -chrII 716759 717633 HC_gene_0743_tx_117 1 - 716759 717633 . 1 875 0 -chrII 716759 717836 HC_gene_0743_tx_118 1 - 716759 717836 . 1 1078 0 -chrII 716759 718085 HC_gene_0743_tx_119 1 - 716759 718085 . 2 553,690 0,637 -chrII 716759 718085 HC_gene_0743_tx_120 5 - 716759 718085 . 1 1327 0 -chrII 716760 717633 HC_gene_0743_tx_121 1 - 716760 717633 . 1 874 0 -chrII 716761 717235 HC_gene_0743_tx_23 1 - 716761 717235 . 1 475 0 -chrII 716762 717235 HC_gene_0743_tx_24 11 - 716762 717235 . 1 474 0 -chrII 716762 717318 HC_gene_0743_tx_25 4 - 716762 717318 . 1 557 0 -chrII 716762 717633 HC_gene_0743_tx_122 5 - 716762 717633 . 1 872 0 -chrII 716762 717836 HC_gene_0743_tx_123 6 - 716762 717836 . 1 1075 0 -chrII 716762 718085 HC_gene_0743_tx_124 41 - 716762 718085 . 1 1324 0 -chrII 716763 717235 HC_gene_0743_tx_26 1 - 716763 717235 . 1 473 0 -chrII 716763 718085 HC_gene_0743_tx_125 11 - 716763 718085 . 1 1323 0 -chrII 716765 718085 HC_gene_0743_tx_126 3 - 716765 718085 . 1 1321 0 -chrII 716766 717235 HC_gene_0743_tx_27 1 - 716766 717235 . 1 470 0 -chrII 716766 718085 HC_gene_0743_tx_127 1 - 716766 718085 . 1 1320 0 -chrII 716768 717235 HC_gene_0743_tx_28 18 - 716768 717235 . 1 468 0 -chrII 716768 717318 HC_gene_0743_tx_29 3 - 716768 717318 . 1 551 0 -chrII 716768 717633 HC_gene_0743_tx_128 4 - 716768 717633 . 1 866 0 -chrII 716768 717836 HC_gene_0743_tx_129 7 - 716768 717836 . 1 1069 0 -chrII 716768 718085 HC_gene_0743_tx_130 66 - 716768 718085 . 1 1318 0 -chrII 716768 718085 HC_gene_0743_tx_131 1 - 716768 718085 . 2 1175,95 0,1223 -chrII 716769 717633 HC_gene_0743_tx_132 1 - 716769 717633 . 1 865 0 -chrII 716769 717836 HC_gene_0743_tx_133 3 - 716769 717836 . 1 1068 0 -chrII 716769 718085 HC_gene_0743_tx_134 5 - 716769 718085 . 1 1317 0 -chrII 716770 717633 HC_gene_0743_tx_135 1 - 716770 717633 . 1 864 0 -chrII 716770 718085 HC_gene_0743_tx_136 3 - 716770 718085 . 1 1316 0 -chrII 716771 717235 HC_gene_0743_tx_30 4 - 716771 717235 . 1 465 0 -chrII 716771 717318 HC_gene_0743_tx_31 2 - 716771 717318 . 1 548 0 -chrII 716771 717633 HC_gene_0743_tx_137 3 - 716771 717633 . 1 863 0 -chrII 716771 717836 HC_gene_0743_tx_138 2 - 716771 717836 . 1 1066 0 -chrII 716771 718085 HC_gene_0743_tx_139 23 - 716771 718085 . 1 1315 0 -chrII 716772 717235 HC_gene_0743_tx_32 14 - 716772 717235 . 1 464 0 -chrII 716772 717318 HC_gene_0743_tx_33 6 - 716772 717318 . 1 547 0 -chrII 716772 717633 HC_gene_0743_tx_140 9 - 716772 717633 . 1 862 0 -chrII 716772 717836 HC_gene_0743_tx_141 10 - 716772 717836 . 1 1065 0 -chrII 716772 718085 HC_gene_0743_tx_142 62 - 716772 718085 . 1 1314 0 -chrII 716772 718085 HC_gene_0743_tx_143 1 - 716772 718085 . 2 1005,239 0,1075 -chrII 716772 718085 HC_gene_0743_tx_144 1 - 716772 718085 . 2 1035,146 0,1168 -chrII 716772 718085 HC_gene_0743_tx_145 1 - 716772 718085 . 2 494,755 0,559 -chrII 716772 718085 HC_gene_0743_tx_146 1 - 716772 718085 . 2 502,698 0,616 -chrII 716773 717235 HC_gene_0743_tx_34 8 - 716773 717235 . 1 463 0 -chrII 716773 717318 HC_gene_0743_tx_35 3 - 716773 717318 . 1 546 0 -chrII 716773 717633 HC_gene_0743_tx_147 5 - 716773 717633 . 1 861 0 -chrII 716773 717836 HC_gene_0743_tx_148 5 - 716773 717836 . 1 1064 0 -chrII 716773 718085 HC_gene_0743_tx_149 44 - 716773 718085 . 1 1313 0 -chrII 716773 718085 HC_gene_0743_tx_150 1 - 716773 718085 . 2 705,560 0,753 -chrII 716774 717235 HC_gene_0743_tx_36 11 - 716774 717235 . 1 462 0 -chrII 716774 717318 HC_gene_0743_tx_37 6 - 716774 717318 . 1 545 0 -chrII 716774 717633 HC_gene_0743_tx_151 9 - 716774 717633 . 1 860 0 -chrII 716774 717836 HC_gene_0743_tx_152 11 - 716774 717836 . 1 1063 0 -chrII 716774 718085 HC_gene_0743_tx_153 54 - 716774 718085 . 1 1312 0 -chrII 716774 718085 HC_gene_0743_tx_154 1 - 716774 718085 . 2 1094,133 0,1179 -chrII 716774 718085 HC_gene_0743_tx_155 1 - 716774 718085 . 2 538,722 0,590 -chrII 716775 717235 HC_gene_0743_tx_38 7 - 716775 717235 . 1 461 0 -chrII 716775 717318 HC_gene_0743_tx_39 1 - 716775 717318 . 1 544 0 -chrII 716775 717633 HC_gene_0743_tx_156 4 - 716775 717633 . 1 859 0 -chrII 716775 717836 HC_gene_0743_tx_157 5 - 716775 717836 . 1 1062 0 -chrII 716775 718085 HC_gene_0743_tx_158 46 - 716775 718085 . 1 1311 0 -chrII 716776 717235 HC_gene_0743_tx_40 3 - 716776 717235 . 1 460 0 -chrII 716776 717318 HC_gene_0743_tx_41 2 - 716776 717318 . 1 543 0 -chrII 716776 717633 HC_gene_0743_tx_159 3 - 716776 717633 . 1 858 0 -chrII 716776 717633 HC_gene_0743_tx_160 1 - 716776 717633 . 2 635,171 0,687 -chrII 716776 717836 HC_gene_0743_tx_161 1 - 716776 717836 . 1 1061 0 -chrII 716776 718071 HC_gene_0743_tx_162 1 - 716776 718071 . 2 689,237 0,1059 -chrII 716776 718085 HC_gene_0743_tx_163 17 - 716776 718085 . 1 1310 0 -chrII 716777 717318 HC_gene_0743_tx_42 1 - 716777 717318 . 1 542 0 -chrII 716777 718085 HC_gene_0743_tx_164 4 - 716777 718085 . 1 1309 0 -chrII 716778 717235 HC_gene_0743_tx_43 4 - 716778 717235 . 1 458 0 -chrII 716778 717318 HC_gene_0743_tx_44 1 - 716778 717318 . 1 541 0 -chrII 716778 717633 HC_gene_0743_tx_165 3 - 716778 717633 . 1 856 0 -chrII 716778 717836 HC_gene_0743_tx_166 1 - 716778 717836 . 1 1059 0 -chrII 716778 718085 HC_gene_0743_tx_167 14 - 716778 718085 . 1 1308 0 -chrII 716779 717235 HC_gene_0743_tx_45 1 - 716779 717235 . 1 457 0 -chrII 716779 717633 HC_gene_0743_tx_168 5 - 716779 717633 . 1 855 0 -chrII 716779 717836 HC_gene_0743_tx_169 1 - 716779 717836 . 1 1058 0 -chrII 716779 718085 HC_gene_0743_tx_170 16 - 716779 718085 . 1 1307 0 -chrII 716780 717235 HC_gene_0743_tx_46 5 - 716780 717235 . 1 456 0 -chrII 716780 717633 HC_gene_0743_tx_171 3 - 716780 717633 . 1 854 0 -chrII 716780 717836 HC_gene_0743_tx_172 3 - 716780 717836 . 1 1057 0 -chrII 716780 718085 HC_gene_0743_tx_173 17 - 716780 718085 . 1 1306 0 -chrII 716780 718085 HC_gene_0743_tx_174 1 - 716780 718085 . 2 486,743 0,563 -chrII 716781 717235 HC_gene_0743_tx_47 6 - 716781 717235 . 1 455 0 -chrII 716781 717318 HC_gene_0743_tx_48 3 - 716781 717318 . 1 538 0 -chrII 716781 717633 HC_gene_0743_tx_175 2 - 716781 717633 . 1 853 0 -chrII 716781 717836 HC_gene_0743_tx_176 1 - 716781 717836 . 1 1056 0 -chrII 716781 718085 HC_gene_0743_tx_177 24 - 716781 718085 . 1 1305 0 -chrII 716782 717235 HC_gene_0743_tx_49 4 - 716782 717235 . 1 454 0 -chrII 716782 717318 HC_gene_0743_tx_50 2 - 716782 717318 . 1 537 0 -chrII 716782 717633 HC_gene_0743_tx_178 2 - 716782 717633 . 1 852 0 -chrII 716782 718085 HC_gene_0743_tx_179 16 - 716782 718085 . 1 1304 0 -chrII 716782 718085 HC_gene_0743_tx_180 1 - 716782 718085 . 2 465,767 0,537 -chrII 716783 718085 HC_gene_0743_tx_181 1 - 716783 718085 . 1 1303 0 -chrII 716784 718085 HC_gene_0743_tx_182 1 - 716784 718085 . 1 1302 0 -chrII 716785 717836 HC_gene_0743_tx_183 1 - 716785 717836 . 1 1052 0 -chrII 716785 718085 HC_gene_0743_tx_184 5 - 716785 718085 . 1 1301 0 -chrII 716786 717235 HC_gene_0743_tx_51 3 - 716786 717235 . 1 450 0 -chrII 716786 717633 HC_gene_0743_tx_185 3 - 716786 717633 . 1 848 0 -chrII 716786 718085 HC_gene_0743_tx_186 4 - 716786 718085 . 1 1300 0 -chrII 716787 717235 HC_gene_0743_tx_52 2 - 716787 717235 . 1 449 0 -chrII 716787 717318 HC_gene_0743_tx_53 2 - 716787 717318 . 1 532 0 -chrII 716787 717836 HC_gene_0743_tx_187 1 - 716787 717836 . 1 1050 0 -chrII 716787 718085 HC_gene_0743_tx_188 11 - 716787 718085 . 1 1299 0 -chrII 716788 717318 HC_gene_0743_tx_54 2 - 716788 717318 . 1 531 0 -chrII 716788 717633 HC_gene_0743_tx_189 2 - 716788 717633 . 1 846 0 -chrII 716788 718080 HC_gene_0743_tx_190 1 - 716788 718080 . 2 880,258 0,1035 -chrII 716788 718085 HC_gene_0743_tx_191 7 - 716788 718085 . 1 1298 0 -chrII 716789 717235 HC_gene_0743_tx_55 3 - 716789 717235 . 1 447 0 -chrII 716789 717318 HC_gene_0743_tx_56 1 - 716789 717318 . 1 530 0 -chrII 716789 717633 HC_gene_0743_tx_192 1 - 716789 717633 . 1 845 0 -chrII 716789 717836 HC_gene_0743_tx_193 3 - 716789 717836 . 1 1048 0 -chrII 716789 718085 HC_gene_0743_tx_194 29 - 716789 718085 . 1 1297 0 -chrII 716789 718085 HC_gene_0743_tx_195 1 - 716789 718085 . 2 1050,143 0,1154 -chrII 716790 717235 HC_gene_0743_tx_57 1 - 716790 717235 . 1 446 0 -chrII 716790 717836 HC_gene_0743_tx_196 1 - 716790 717836 . 1 1047 0 -chrII 716790 718085 HC_gene_0743_tx_197 2 - 716790 718085 . 1 1296 0 -chrII 716791 717318 HC_gene_0743_tx_58 1 - 716791 717318 . 1 528 0 -chrII 716791 717633 HC_gene_0743_tx_198 1 - 716791 717633 . 1 843 0 -chrII 716791 718085 HC_gene_0743_tx_199 8 - 716791 718085 . 1 1295 0 -chrII 716792 717633 HC_gene_0743_tx_200 1 - 716792 717633 . 1 842 0 -chrII 716792 718085 HC_gene_0743_tx_201 8 - 716792 718085 . 1 1294 0 -chrII 716793 717235 HC_gene_0743_tx_59 1 - 716793 717235 . 1 443 0 -chrII 716793 717633 HC_gene_0743_tx_202 2 - 716793 717633 . 1 841 0 -chrII 716793 718085 HC_gene_0743_tx_203 7 - 716793 718085 . 1 1293 0 -chrII 716794 717235 HC_gene_0743_tx_60 2 - 716794 717235 . 1 442 0 -chrII 716794 718085 HC_gene_0743_tx_204 4 - 716794 718085 . 1 1292 0 -chrII 716795 718085 HC_gene_0743_tx_205 5 - 716795 718085 . 1 1291 0 -chrII 716796 717235 HC_gene_0743_tx_61 2 - 716796 717235 . 1 440 0 -chrII 716796 717318 HC_gene_0743_tx_62 1 - 716796 717318 . 1 523 0 -chrII 716796 717633 HC_gene_0743_tx_206 1 - 716796 717633 . 1 838 0 -chrII 716796 717836 HC_gene_0743_tx_207 2 - 716796 717836 . 1 1041 0 -chrII 716796 718085 HC_gene_0743_tx_208 16 - 716796 718085 . 1 1290 0 -chrII 716796 718085 HC_gene_0743_tx_209 1 - 716796 718085 . 2 58,623 0,667 -chrII 716797 717836 HC_gene_0743_tx_210 1 - 716797 717836 . 1 1040 0 -chrII 716797 718085 HC_gene_0743_tx_211 1 - 716797 718085 . 1 1289 0 -chrII 716798 717235 HC_gene_0743_tx_63 2 - 716798 717235 . 1 438 0 -chrII 716798 718085 HC_gene_0743_tx_212 6 - 716798 718085 . 1 1288 0 -chrII 716799 717235 HC_gene_0743_tx_64 1 - 716799 717235 . 1 437 0 -chrII 716799 717633 HC_gene_0743_tx_213 1 - 716799 717633 . 1 835 0 -chrII 716799 718085 HC_gene_0743_tx_214 17 - 716799 718085 . 1 1287 0 -chrII 716800 717318 HC_gene_0743_tx_65 1 - 716800 717318 . 1 519 0 -chrII 716800 718085 HC_gene_0743_tx_215 3 - 716800 718085 . 1 1286 0 -chrII 716802 717235 HC_gene_0743_tx_66 1 - 716802 717235 . 1 434 0 -chrII 716802 717318 HC_gene_0743_tx_67 1 - 716802 717318 . 1 517 0 -chrII 716802 717633 HC_gene_0743_tx_216 1 - 716802 717633 . 1 832 0 -chrII 716802 718085 HC_gene_0743_tx_217 3 - 716802 718085 . 1 1284 0 -chrII 716802 718085 HC_gene_0743_tx_218 1 - 716802 718085 . 2 255,581 0,703 -chrII 716803 718085 HC_gene_0743_tx_219 2 - 716803 718085 . 1 1283 0 -chrII 716804 717235 HC_gene_0743_tx_68 1 - 716804 717235 . 1 432 0 -chrII 716804 717318 HC_gene_0743_tx_69 1 - 716804 717318 . 1 515 0 -chrII 716804 718085 HC_gene_0743_tx_220 5 - 716804 718085 . 1 1282 0 -chrII 716805 717235 HC_gene_0743_tx_70 1 - 716805 717235 . 1 431 0 -chrII 716805 718085 HC_gene_0743_tx_221 1 - 716805 718085 . 1 1281 0 -chrII 716806 717235 HC_gene_0743_tx_71 1 - 716806 717235 . 1 430 0 -chrII 716806 717318 HC_gene_0743_tx_72 1 - 716806 717318 . 1 513 0 -chrII 716806 717633 HC_gene_0743_tx_222 1 - 716806 717633 . 1 828 0 -chrII 716806 718085 HC_gene_0743_tx_223 6 - 716806 718085 . 1 1280 0 -chrII 716807 717235 HC_gene_0743_tx_73 1 - 716807 717235 . 1 429 0 -chrII 716807 717633 HC_gene_0743_tx_224 1 - 716807 717633 . 1 827 0 -chrII 716807 718085 HC_gene_0743_tx_225 8 - 716807 718085 . 1 1279 0 -chrII 716808 717633 HC_gene_0743_tx_226 1 - 716808 717633 . 1 826 0 -chrII 716808 717836 HC_gene_0743_tx_227 1 - 716808 717836 . 1 1029 0 -chrII 716808 718085 HC_gene_0743_tx_228 9 - 716808 718085 . 1 1278 0 -chrII 716809 717235 HC_gene_0743_tx_74 1 - 716809 717235 . 1 427 0 -chrII 716809 718085 HC_gene_0743_tx_229 11 - 716809 718085 . 1 1277 0 -chrII 716810 717235 HC_gene_0743_tx_75 2 - 716810 717235 . 1 426 0 -chrII 716810 717318 HC_gene_0743_tx_76 1 - 716810 717318 . 1 509 0 -chrII 716810 717633 HC_gene_0743_tx_230 1 - 716810 717633 . 1 824 0 -chrII 716810 718085 HC_gene_0743_tx_231 5 - 716810 718085 . 1 1276 0 -chrII 716811 717235 HC_gene_0743_tx_77 1 - 716811 717235 . 1 425 0 -chrII 716811 717318 HC_gene_0743_tx_78 1 - 716811 717318 . 1 508 0 -chrII 716811 717633 HC_gene_0743_tx_232 2 - 716811 717633 . 1 823 0 -chrII 716811 717836 HC_gene_0743_tx_233 3 - 716811 717836 . 1 1026 0 -chrII 716811 718085 HC_gene_0743_tx_234 24 - 716811 718085 . 1 1275 0 -chrII 716811 718085 HC_gene_0743_tx_235 1 - 716811 718085 . 2 898,157 0,1118 -chrII 716812 717235 HC_gene_0743_tx_79 1 - 716812 717235 . 1 424 0 -chrII 716812 717836 HC_gene_0743_tx_236 1 - 716812 717836 . 1 1025 0 -chrII 716812 718085 HC_gene_0743_tx_237 1 - 716812 718085 . 1 1274 0 -chrII 716813 717235 HC_gene_0743_tx_80 1 - 716813 717235 . 1 423 0 -chrII 716813 717836 HC_gene_0743_tx_238 1 - 716813 717836 . 1 1024 0 -chrII 716813 718085 HC_gene_0743_tx_239 1 - 716813 718085 . 1 1273 0 -chrII 716814 717235 HC_gene_0743_tx_81 3 - 716814 717235 . 1 422 0 -chrII 716814 717318 HC_gene_0743_tx_82 1 - 716814 717318 . 1 505 0 -chrII 716814 717836 HC_gene_0743_tx_240 1 - 716814 717836 . 1 1023 0 -chrII 716814 718085 HC_gene_0743_tx_241 6 - 716814 718085 . 1 1272 0 -chrII 716815 718085 HC_gene_0743_tx_242 2 - 716815 718085 . 1 1271 0 -chrII 716817 718085 HC_gene_0743_tx_243 4 - 716817 718085 . 1 1269 0 -chrII 716818 718085 HC_gene_0743_tx_244 2 - 716818 718085 . 1 1268 0 -chrII 716819 718085 HC_gene_0743_tx_245 1 - 716819 718085 . 1 1267 0 -chrII 716820 718085 HC_gene_0743_tx_246 6 - 716820 718085 . 1 1266 0 -chrII 716821 718085 HC_gene_0743_tx_247 4 - 716821 718085 . 1 1265 0 -chrII 716822 718085 HC_gene_0743_tx_248 6 - 716822 718085 . 1 1264 0 -chrII 716823 717235 HC_gene_0743_tx_83 1 - 716823 717235 . 1 413 0 -chrII 716823 718085 HC_gene_0743_tx_249 3 - 716823 718085 . 1 1263 0 -chrII 716825 717836 HC_gene_0743_tx_250 1 - 716825 717836 . 1 1012 0 -chrII 716825 718085 HC_gene_0743_tx_251 1 - 716825 718085 . 1 1261 0 -chrII 716828 718085 HC_gene_0743_tx_252 3 - 716828 718085 . 1 1258 0 -chrII 716829 717235 HC_gene_0743_tx_84 1 - 716829 717235 . 1 407 0 -chrII 716829 718085 HC_gene_0743_tx_253 7 - 716829 718085 . 1 1257 0 -chrII 716830 717235 HC_gene_0743_tx_85 1 - 716830 717235 . 1 406 0 -chrII 716830 718085 HC_gene_0743_tx_254 2 - 716830 718085 . 1 1256 0 -chrII 716832 718085 HC_gene_0743_tx_255 1 - 716832 718085 . 1 1254 0 -chrII 716836 718085 HC_gene_0743_tx_256 1 - 716836 718085 . 1 1250 0 -chrII 716837 717235 HC_gene_0743_tx_86 1 - 716837 717235 . 1 399 0 -chrII 716837 718085 HC_gene_0743_tx_257 3 - 716837 718085 . 1 1249 0 -chrII 716838 718085 HC_gene_0743_tx_258 1 - 716838 718085 . 1 1248 0 -chrII 716841 717235 HC_gene_0743_tx_87 1 - 716841 717235 . 1 395 0 -chrII 716842 717235 HC_gene_0743_tx_88 1 - 716842 717235 . 1 394 0 -chrII 716842 718085 HC_gene_0743_tx_259 1 - 716842 718085 . 1 1244 0 -chrII 716843 718085 HC_gene_0743_tx_260 3 - 716843 718085 . 1 1243 0 -chrII 717954 718085 HC_gene_0743_tx_261 1 - 717954 718085 . 1 132 0 -chrII 718404 718579 HC_gene_0411_tx_1 1 + 718404 718579 . 1 176 0 -chrII 718404 719389 HC_gene_0411_tx_2 1 + 718404 719389 . 1 986 0 -chrII 718488 718950 LC_gene_0744_tx_1 1 - 718488 718950 . 1 463 0 -chrII 720626 721146 LC_gene_0745_tx_1 1 - 720626 721146 . 1 521 0 -chrII 721330 722094 HC_gene_0412_tx_1 5 + 721330 722094 . 1 765 0 -chrII 721330 722208 HC_gene_0412_tx_2 1 + 721330 722208 . 1 879 0 -chrII 721330 722396 HC_gene_0412_tx_3 35 + 721330 722396 . 1 1067 0 -chrII 721870 722094 HC_gene_0412_tx_4 1 + 721870 722094 . 1 225 0 -chrII 721870 722396 HC_gene_0412_tx_5 7 + 721870 722396 . 1 527 0 -chrII 722279 722854 HC_gene_0746_tx_1 7 - 722279 722854 . 1 576 0 -chrII 722592 723118 HC_gene_0413_tx_1 223 + 722592 723118 . 1 527 0 -chrII 723208 723728 HC_gene_0414_tx_1 114 + 723208 723728 . 1 521 0 -chrII 723596 724267 HC_gene_0747_tx_1 69 - 723596 724267 . 1 672 0 -chrII 724422 726614 HC_gene_0415_tx_1 5 + 724422 726614 . 1 2193 0 -chrII 724422 726691 HC_gene_0415_tx_2 7 + 724422 726691 . 1 2270 0 -chrII 724422 726691 HC_gene_0415_tx_3 1 + 724422 726691 . 2 134,2049 0,221 -chrII 724846 726691 HC_gene_0415_tx_4 1 + 724846 726691 . 1 1846 0 -chrII 725110 726614 HC_gene_0415_tx_5 3 + 725110 726614 . 1 1505 0 -chrII 725110 726691 HC_gene_0415_tx_6 5 + 725110 726691 . 1 1582 0 -chrII 725110 727048 HC_gene_0415_tx_7 1 + 725110 727048 . 2 1256,633 0,1306 -chrII 725412 726614 HC_gene_0415_tx_8 2 + 725412 726614 . 1 1203 0 -chrII 725412 726691 HC_gene_0415_tx_9 2 + 725412 726691 . 1 1280 0 -chrII 725950 726614 HC_gene_0415_tx_10 6 + 725950 726614 . 1 665 0 -chrII 725950 726691 HC_gene_0415_tx_11 5 + 725950 726691 . 1 742 0 -chrII 725950 726691 HC_gene_0415_tx_12 1 + 725950 726691 . 2 365,332 0,410 -chrII 726518 727112 HC_gene_0748_tx_1 58 - 726518 727112 . 2 400,101 0,494 -chrII 726518 727112 HC_gene_0748_tx_2 4 - 726518 727112 . 2 308,101 0,494 -chrII 726518 727112 HC_gene_0748_tx_3 19 - 726518 727112 . 1 595 0 -chrII 726518 727112 HC_gene_0748_tx_4 1 - 726518 727112 . 2 400,105 0,490 -chrII 726518 727112 HC_gene_0748_tx_5 1 - 726518 727112 . 2 390,105 0,490 -chrII 727208 727737 HC_gene_0749_tx_1 6 - 727208 727737 . 1 530 0 -chrII 727208 727947 HC_gene_0749_tx_2 4 - 727208 727947 . 1 740 0 -chrII 727208 727947 HC_gene_0749_tx_3 1 - 727208 727947 . 2 431,249 0,491 -chrII 727208 728138 HC_gene_0749_tx_5 23 - 727208 728138 . 1 931 0 -chrII 727208 728138 HC_gene_0749_tx_6 1 - 727208 728138 . 2 180,615 0,316 -chrII 727338 727672 HC_gene_0749_tx_9 25 - 727338 727672 . 1 335 0 -chrII 727338 727737 HC_gene_0749_tx_10 96 - 727338 727737 . 1 400 0 -chrII 727338 727947 HC_gene_0749_tx_4 59 - 727338 727947 . 1 610 0 -chrII 727338 728138 HC_gene_0749_tx_7 609 - 727338 728138 . 1 801 0 -chrII 727338 728138 HC_gene_0749_tx_8 1 - 727338 728138 . 2 67,507 0,294 -chrII 727353 727902 LC_gene_0416_tx_1 1 + 727353 727902 . 1 550 0 -chrII 727536 728138 HC_gene_0749_tx_11 1 - 727536 728138 . 1 603 0 -chrII 727537 728138 HC_gene_0749_tx_12 1 - 727537 728138 . 1 602 0 -chrII 727539 727947 HC_gene_0749_tx_18 1 - 727539 727947 . 1 409 0 -chrII 727546 728138 HC_gene_0749_tx_13 2 - 727546 728138 . 1 593 0 -chrII 727552 728138 HC_gene_0749_tx_14 1 - 727552 728138 . 1 587 0 -chrII 727555 728138 HC_gene_0749_tx_15 1 - 727555 728138 . 1 584 0 -chrII 727556 728138 HC_gene_0749_tx_16 2 - 727556 728138 . 1 583 0 -chrII 727565 728138 HC_gene_0749_tx_17 1 - 727565 728138 . 1 574 0 -chrII 728353 729778 HC_gene_0417_tx_1 2 + 728353 729778 . 1 1426 0 -chrII 728853 729778 HC_gene_0418_tx_1 31 + 728853 729778 . 1 926 0 -chrII 728853 729987 HC_gene_0418_tx_2 1 + 728853 729987 . 1 1135 0 -chrII 729365 730186 HC_gene_0750_tx_1 8 - 729365 730186 . 1 822 0 -chrII 729505 730186 HC_gene_0750_tx_2 2 - 729505 730186 . 1 682 0 -chrII 729545 730186 HC_gene_0750_tx_3 3 - 729545 730186 . 1 642 0 -chrII 729552 729951 HC_gene_0750_tx_21 1 - 729552 729951 . 1 400 0 -chrII 729557 730186 HC_gene_0750_tx_4 1 - 729557 730186 . 1 630 0 -chrII 729558 730186 HC_gene_0750_tx_5 1 - 729558 730186 . 1 629 0 -chrII 729559 730186 HC_gene_0750_tx_6 1 - 729559 730186 . 1 628 0 -chrII 729560 730186 HC_gene_0750_tx_7 1 - 729560 730186 . 1 627 0 -chrII 729571 730186 HC_gene_0750_tx_8 1 - 729571 730186 . 1 616 0 -chrII 729572 730186 HC_gene_0750_tx_9 1 - 729572 730186 . 1 615 0 -chrII 729621 730186 HC_gene_0750_tx_10 1 - 729621 730186 . 1 566 0 -chrII 729661 730186 HC_gene_0750_tx_11 2 - 729661 730186 . 1 526 0 -chrII 729663 730186 HC_gene_0750_tx_12 2 - 729663 730186 . 1 524 0 -chrII 729666 730186 HC_gene_0750_tx_13 1 - 729666 730186 . 1 521 0 -chrII 729667 730186 HC_gene_0750_tx_14 1 - 729667 730186 . 1 520 0 -chrII 729670 729951 HC_gene_0750_tx_22 1 - 729670 729951 . 1 282 0 -chrII 729670 730186 HC_gene_0750_tx_15 5 - 729670 730186 . 1 517 0 -chrII 729671 730186 HC_gene_0750_tx_16 2 - 729671 730186 . 1 516 0 -chrII 729672 730186 HC_gene_0750_tx_17 3 - 729672 730186 . 1 515 0 -chrII 729673 730186 HC_gene_0750_tx_18 1 - 729673 730186 . 1 514 0 -chrII 729674 730186 HC_gene_0750_tx_19 1 - 729674 730186 . 1 513 0 -chrII 729675 730186 HC_gene_0750_tx_20 1 - 729675 730186 . 1 512 0 -chrII 730340 732635 HC_gene_0419_tx_1 5 + 730340 732635 . 1 2296 0 -chrII 732511 733851 HC_gene_0751_tx_1 1 - 732511 733851 . 1 1341 0 -chrII 732511 734649 HC_gene_0751_tx_2 5 - 732511 734649 . 1 2139 0 -chrII 732511 734649 HC_gene_0751_tx_3 1 - 732511 734649 . 2 927,1115 0,1024 -chrII 734667 735109 HC_gene_0752_tx_1 18 - 734667 735109 . 1 443 0 -chrII 734667 735313 HC_gene_0752_tx_2 8 - 734667 735313 . 1 647 0 -chrII 734667 735568 HC_gene_0752_tx_3 85 - 734667 735568 . 1 902 0 -chrII 734774 735677 LC_gene_0420_tx_1 1 + 734774 735677 . 1 904 0 -chrII 735595 736075 HC_gene_0753_tx_1 2 - 735595 736075 . 1 481 0 -chrII 735596 736075 HC_gene_0753_tx_2 1 - 735596 736075 . 1 480 0 -chrII 735597 736075 HC_gene_0753_tx_3 1 - 735597 736075 . 1 479 0 -chrII 736223 737803 HC_gene_0421_tx_1 66 + 736223 737803 . 1 1581 0 -chrII 736223 737803 HC_gene_0421_tx_2 1 + 736223 737803 . 2 888,604 0,977 -chrII 736223 737803 HC_gene_0421_tx_3 1 + 736223 737803 . 2 499,386 0,1195 -chrII 736223 737803 HC_gene_0421_tx_4 1 + 736223 737803 . 2 391,1018 0,563 -chrII 736223 737803 HC_gene_0421_tx_5 1 + 736223 737803 . 2 659,804 0,777 -chrII 736223 737803 HC_gene_0421_tx_6 1 + 736223 737803 . 2 594,901 0,680 -chrII 736223 737803 HC_gene_0421_tx_7 1 + 736223 737803 . 2 328,1047 0,534 -chrII 736644 737803 HC_gene_0421_tx_8 11 + 736644 737803 . 1 1160 0 -chrII 736723 737803 HC_gene_0421_tx_9 20 + 736723 737803 . 1 1081 0 -chrII 736823 737803 HC_gene_0421_tx_10 28 + 736823 737803 . 1 981 0 -chrII 737126 737803 HC_gene_0421_tx_11 35 + 737126 737803 . 1 678 0 -chrII 737321 737803 HC_gene_0421_tx_12 21 + 737321 737803 . 1 483 0 -chrII 737519 737803 HC_gene_0421_tx_13 30 + 737519 737803 . 1 285 0 -chrII 737679 738082 HC_gene_0754_tx_1 1 - 737679 738082 . 1 404 0 -chrII 737679 738395 HC_gene_0754_tx_2 18 - 737679 738395 . 1 717 0 -chrII 738545 739688 HC_gene_0422_tx_1 109 + 738545 739688 . 1 1144 0 -chrII 739828 741145 HC_gene_0423_tx_1 78 + 739828 741145 . 1 1318 0 -chrII 739828 741145 HC_gene_0423_tx_2 1 + 739828 741145 . 2 283,798 0,520 -chrII 740077 741145 HC_gene_0423_tx_3 8 + 740077 741145 . 1 1069 0 -chrII 741268 741721 HC_gene_0424_tx_1 251 + 741268 741721 . 1 454 0 -chrII 741831 742169 MC_gene_0425_tx_1 1 + 741831 742169 . 1 339 0 -chrII 742000 742443 HC_gene_0755_tx_1 13 - 742000 742443 . 1 444 0 -chrII 742000 742598 HC_gene_0755_tx_2 204 - 742000 742598 . 1 599 0 -chrII 742722 744442 HC_gene_0756_tx_1 4 - 742722 744442 . 1 1721 0 -chrII 742722 744671 HC_gene_0756_tx_2 10 - 742722 744671 . 1 1950 0 -chrII 744826 746217 HC_gene_0426_tx_1 31 + 744826 746217 . 1 1392 0 -chrII 744826 746217 HC_gene_0426_tx_2 1 + 744826 746217 . 2 908,390 0,1002 -chrII 744826 746217 HC_gene_0426_tx_3 1 + 744826 746217 . 2 731,613 0,779 -chrII 744826 746217 HC_gene_0426_tx_4 1 + 744826 746217 . 2 722,604 0,788 -chrII 746115 747819 HC_gene_0757_tx_1 1 - 746115 747819 . 1 1705 0 -chrII 746172 747819 HC_gene_0757_tx_2 34 - 746172 747819 . 1 1648 0 -chrII 746172 747819 HC_gene_0757_tx_3 1 - 746172 747819 . 2 630,843 0,805 -chrII 746252 747819 HC_gene_0757_tx_4 2 - 746252 747819 . 1 1568 0 -chrII 747109 748010 LC_gene_0427_tx_1 1 + 747109 748010 . 1 902 0 -chrII 747953 748965 HC_gene_0758_tx_1 4 - 747953 748965 . 1 1013 0 -chrII 747953 749068 HC_gene_0758_tx_2 1 - 747953 749068 . 1 1116 0 -chrII 747953 749310 HC_gene_0758_tx_3 4 - 747953 749310 . 1 1358 0 -chrII 747953 749403 HC_gene_0758_tx_4 41 - 747953 749403 . 1 1451 0 -chrII 749543 751335 HC_gene_0428_tx_1 10 + 749543 751335 . 1 1793 0 -chrII 751184 751791 HC_gene_0759_tx_1 8 - 751184 751791 . 1 608 0 -chrII 751184 751918 HC_gene_0759_tx_2 2 - 751184 751918 . 1 735 0 -chrII 751184 753603 HC_gene_0759_tx_3 1 - 751184 753603 . 1 2420 0 -chrII 751184 757208 HC_gene_0759_tx_4 1 - 751184 757208 . 1 6025 0 -chrII 752883 754219 LC_gene_0429_tx_1 1 + 752883 754219 . 1 1337 0 -chrII 757529 759549 HC_gene_0760_tx_1 5 - 757529 759549 . 1 2021 0 -chrII 757529 759781 HC_gene_0760_tx_2 1 - 757529 759781 . 1 2253 0 -chrII 757529 760138 HC_gene_0760_tx_3 10 - 757529 760138 . 1 2610 0 -chrII 760268 760985 HC_gene_0430_tx_1 42 + 760268 760985 . 1 718 0 -chrII 760268 761103 HC_gene_0430_tx_2 5 + 760268 761103 . 1 836 0 -chrII 761228 762714 HC_gene_0431_tx_1 67 + 761228 762714 . 1 1487 0 -chrII 761228 762714 HC_gene_0431_tx_2 1 + 761228 762714 . 2 216,1150 0,337 -chrII 761228 762714 HC_gene_0431_tx_3 1 + 761228 762714 . 2 866,374 0,1113 -chrII 761228 762714 HC_gene_0431_tx_4 1 + 761228 762714 . 2 230,520 0,967 -chrII 761228 762714 HC_gene_0431_tx_5 1 + 761228 762714 . 2 267,977 0,510 -chrII 761237 762714 HC_gene_0431_tx_6 1 + 761237 762714 . 2 929,379 0,1099 -chrII 761359 762714 HC_gene_0431_tx_7 10 + 761359 762714 . 1 1356 0 -chrII 761359 762714 HC_gene_0431_tx_8 1 + 761359 762714 . 2 302,982 0,374 -chrII 761359 762714 HC_gene_0431_tx_9 1 + 761359 762714 . 2 267,997 0,359 -chrII 761845 762714 HC_gene_0431_tx_10 13 + 761845 762714 . 1 870 0 -chrII 762146 762714 HC_gene_0431_tx_11 9 + 762146 762714 . 1 569 0 -chrII 762295 762714 HC_gene_0431_tx_12 40 + 762295 762714 . 1 420 0 -chrII 762398 762714 HC_gene_0431_tx_13 17 + 762398 762714 . 1 317 0 -chrII 762621 763992 HC_gene_0761_tx_1 1 - 762621 763992 . 1 1372 0 -chrII 762621 764701 HC_gene_0761_tx_2 5 - 762621 764701 . 1 2081 0 -chrII 762880 764535 LC_gene_0432_tx_1 1 + 762880 764535 . 1 1656 0 -chrII 764858 767650 HC_gene_0762_tx_1 8 - 764858 767650 . 1 2793 0 -chrII 767417 768182 LC_gene_0433_tx_1 1 + 767417 768182 . 1 766 0 -chrII 768192 768719 HC_gene_0434_tx_1 8 + 768192 768719 . 1 528 0 -chrII 768192 768791 HC_gene_0434_tx_2 107 + 768192 768791 . 1 600 0 -chrII 768404 768791 HC_gene_0434_tx_3 8 + 768404 768791 . 1 388 0 -chrII 768709 770560 HC_gene_0763_tx_1 7 - 768709 770560 . 1 1852 0 -chrII 768760 769895 HC_gene_0763_tx_2 3 - 768760 769895 . 1 1136 0 -chrII 768760 770143 HC_gene_0763_tx_3 1 - 768760 770143 . 1 1384 0 -chrII 768760 770560 HC_gene_0763_tx_4 10 - 768760 770560 . 1 1801 0 -chrII 768763 770143 HC_gene_0763_tx_5 1 - 768763 770143 . 1 1381 0 -chrII 768763 770560 HC_gene_0763_tx_6 4 - 768763 770560 . 1 1798 0 -chrII 768764 770143 HC_gene_0763_tx_7 1 - 768764 770143 . 1 1380 0 -chrII 768765 769538 HC_gene_0763_tx_64 1 - 768765 769538 . 1 774 0 -chrII 768765 770143 HC_gene_0763_tx_8 1 - 768765 770143 . 1 1379 0 -chrII 768765 770560 HC_gene_0763_tx_9 9 - 768765 770560 . 1 1796 0 -chrII 768766 769538 HC_gene_0763_tx_65 1 - 768766 769538 . 1 773 0 -chrII 768766 770143 HC_gene_0763_tx_10 2 - 768766 770143 . 1 1378 0 -chrII 768766 770560 HC_gene_0763_tx_11 3 - 768766 770560 . 1 1795 0 -chrII 768767 769895 HC_gene_0763_tx_12 1 - 768767 769895 . 1 1129 0 -chrII 768767 770297 HC_gene_0763_tx_13 1 - 768767 770297 . 1 1531 0 -chrII 768767 770560 HC_gene_0763_tx_14 1 - 768767 770560 . 1 1794 0 -chrII 768768 770560 HC_gene_0763_tx_15 1 - 768768 770560 . 1 1793 0 -chrII 768769 769538 HC_gene_0763_tx_66 1 - 768769 769538 . 1 770 0 -chrII 768769 770560 HC_gene_0763_tx_16 1 - 768769 770560 . 1 1792 0 -chrII 768770 769538 HC_gene_0763_tx_67 2 - 768770 769538 . 1 769 0 -chrII 768770 770143 HC_gene_0763_tx_17 1 - 768770 770143 . 1 1374 0 -chrII 768770 770560 HC_gene_0763_tx_18 8 - 768770 770560 . 1 1791 0 -chrII 768771 770560 HC_gene_0763_tx_19 4 - 768771 770560 . 1 1790 0 -chrII 768772 770143 HC_gene_0763_tx_20 1 - 768772 770143 . 1 1372 0 -chrII 768772 770560 HC_gene_0763_tx_21 3 - 768772 770560 . 1 1789 0 -chrII 768773 769538 HC_gene_0763_tx_68 1 - 768773 769538 . 1 766 0 -chrII 768773 770143 HC_gene_0763_tx_22 1 - 768773 770143 . 1 1371 0 -chrII 768773 770297 HC_gene_0763_tx_23 1 - 768773 770297 . 1 1525 0 -chrII 768773 770560 HC_gene_0763_tx_24 5 - 768773 770560 . 1 1788 0 -chrII 768775 770143 HC_gene_0763_tx_25 1 - 768775 770143 . 1 1369 0 -chrII 768775 770560 HC_gene_0763_tx_26 2 - 768775 770560 . 1 1786 0 -chrII 768776 770143 HC_gene_0763_tx_27 1 - 768776 770143 . 1 1368 0 -chrII 768776 770560 HC_gene_0763_tx_28 1 - 768776 770560 . 1 1785 0 -chrII 768778 770143 HC_gene_0763_tx_29 1 - 768778 770143 . 1 1366 0 -chrII 768778 770297 HC_gene_0763_tx_30 1 - 768778 770297 . 1 1520 0 -chrII 768778 770560 HC_gene_0763_tx_31 15 - 768778 770560 . 1 1783 0 -chrII 768780 769538 HC_gene_0763_tx_69 1 - 768780 769538 . 1 759 0 -chrII 768780 769895 HC_gene_0763_tx_32 1 - 768780 769895 . 1 1116 0 -chrII 768780 770143 HC_gene_0763_tx_33 2 - 768780 770143 . 1 1364 0 -chrII 768780 770297 HC_gene_0763_tx_34 3 - 768780 770297 . 1 1518 0 -chrII 768780 770560 HC_gene_0763_tx_35 18 - 768780 770560 . 1 1781 0 -chrII 768781 769538 HC_gene_0763_tx_70 1 - 768781 769538 . 1 758 0 -chrII 768781 769895 HC_gene_0763_tx_36 1 - 768781 769895 . 1 1115 0 -chrII 768781 770143 HC_gene_0763_tx_37 1 - 768781 770143 . 1 1363 0 -chrII 768781 770297 HC_gene_0763_tx_38 1 - 768781 770297 . 1 1517 0 -chrII 768781 770560 HC_gene_0763_tx_39 1 - 768781 770560 . 1 1780 0 -chrII 768783 770143 HC_gene_0763_tx_40 1 - 768783 770143 . 1 1361 0 -chrII 768783 770560 HC_gene_0763_tx_41 3 - 768783 770560 . 1 1778 0 -chrII 768784 770560 HC_gene_0763_tx_42 2 - 768784 770560 . 1 1777 0 -chrII 768785 769538 HC_gene_0763_tx_71 1 - 768785 769538 . 1 754 0 -chrII 768785 769895 HC_gene_0763_tx_43 2 - 768785 769895 . 1 1111 0 -chrII 768785 770560 HC_gene_0763_tx_44 4 - 768785 770560 . 1 1776 0 -chrII 768786 770560 HC_gene_0763_tx_45 1 - 768786 770560 . 1 1775 0 -chrII 768787 770560 HC_gene_0763_tx_46 1 - 768787 770560 . 1 1774 0 -chrII 768789 769538 HC_gene_0763_tx_72 2 - 768789 769538 . 1 750 0 -chrII 768789 769895 HC_gene_0763_tx_47 1 - 768789 769895 . 1 1107 0 -chrII 768789 770143 HC_gene_0763_tx_48 1 - 768789 770143 . 1 1355 0 -chrII 768789 770297 HC_gene_0763_tx_49 2 - 768789 770297 . 1 1509 0 -chrII 768789 770560 HC_gene_0763_tx_50 8 - 768789 770560 . 1 1772 0 -chrII 768791 770143 HC_gene_0763_tx_51 1 - 768791 770143 . 1 1353 0 -chrII 768791 770297 HC_gene_0763_tx_52 1 - 768791 770297 . 1 1507 0 -chrII 768792 769538 HC_gene_0763_tx_73 1 - 768792 769538 . 1 747 0 -chrII 768792 769895 HC_gene_0763_tx_53 2 - 768792 769895 . 1 1104 0 -chrII 768792 770560 HC_gene_0763_tx_54 6 - 768792 770560 . 1 1769 0 -chrII 768792 770560 HC_gene_0763_tx_55 1 - 768792 770560 . 2 518,1196 0,573 -chrII 768793 769538 HC_gene_0763_tx_74 1 - 768793 769538 . 1 746 0 -chrII 768793 770297 HC_gene_0763_tx_56 1 - 768793 770297 . 1 1505 0 -chrII 768793 770560 HC_gene_0763_tx_57 5 - 768793 770560 . 1 1768 0 -chrII 768794 770560 HC_gene_0763_tx_58 1 - 768794 770560 . 1 1767 0 -chrII 768795 770560 HC_gene_0763_tx_59 3 - 768795 770560 . 1 1766 0 -chrII 768796 769538 HC_gene_0763_tx_75 2 - 768796 769538 . 1 743 0 -chrII 768796 769895 HC_gene_0763_tx_60 1 - 768796 769895 . 1 1100 0 -chrII 768796 770143 HC_gene_0763_tx_61 2 - 768796 770143 . 1 1348 0 -chrII 768796 770297 HC_gene_0763_tx_62 1 - 768796 770297 . 1 1502 0 -chrII 768796 770560 HC_gene_0763_tx_63 14 - 768796 770560 . 1 1765 0 -chrII 768956 769921 MC_gene_0435_tx_1 1 + 768956 769921 . 1 966 0 -chrII 770868 771782 MC_gene_0436_tx_1 1 + 770868 771782 . 1 915 0 -chrII 773328 773808 MC_gene_0437_tx_1 1 + 773328 773808 . 1 481 0 -chrII 773775 774444 HC_gene_0764_tx_1 2 - 773775 774444 . 1 670 0 -chrII 773845 774621 MC_gene_0438_tx_1 1 + 773845 774621 . 1 777 0 -chrII 773901 774397 MC_gene_0438_tx_2 1 + 773901 774397 . 1 497 0 -chrII 774053 774521 MC_gene_0438_tx_3 1 + 774053 774521 . 1 469 0 -chrII 774682 776381 HC_gene_0439_tx_1 1 + 774682 776381 . 2 1017,521 0,1179 -chrII 774686 776381 HC_gene_0439_tx_2 178 + 774686 776381 . 1 1696 0 -chrII 774686 776381 HC_gene_0439_tx_3 1 + 774686 776381 . 2 463,921 0,775 -chrII 774686 776381 HC_gene_0439_tx_4 1 + 774686 776381 . 2 896,690 0,1006 -chrII 774686 776381 HC_gene_0439_tx_5 1 + 774686 776381 . 2 948,647 0,1049 -chrII 774696 776381 HC_gene_0439_tx_6 1 + 774696 776381 . 2 1097,527 0,1159 -chrII 774946 776381 HC_gene_0439_tx_7 80 + 774946 776381 . 1 1436 0 -chrII 774946 776381 HC_gene_0439_tx_8 1 + 774946 776381 . 2 973,380 0,1056 -chrII 774946 776381 HC_gene_0439_tx_9 1 + 774946 776381 . 2 691,137 0,1299 -chrII 775054 776381 HC_gene_0439_tx_10 1 + 775054 776381 . 2 897,375 0,953 -chrII 775219 776381 HC_gene_0439_tx_11 11 + 775219 776381 . 1 1163 0 -chrII 775366 776381 HC_gene_0439_tx_12 40 + 775366 776381 . 1 1016 0 -chrII 775680 776284 LC_gene_0765_tx_1 1 - 775680 776284 . 1 605 0 -chrII 775681 776381 HC_gene_0439_tx_13 34 + 775681 776381 . 1 701 0 -chrII 775780 776381 HC_gene_0439_tx_14 89 + 775780 776381 . 1 602 0 -chrII 775949 776381 HC_gene_0439_tx_15 34 + 775949 776381 . 1 433 0 -chrII 776050 776381 HC_gene_0439_tx_16 76 + 776050 776381 . 1 332 0 -chrII 776287 776741 MC_gene_0766_tx_1 1 - 776287 776741 . 1 455 0 -chrII 776537 777912 HC_gene_0440_tx_1 15 + 776537 777912 . 1 1376 0 -chrII 776537 777969 HC_gene_0440_tx_2 52 + 776537 777969 . 1 1433 0 -chrII 776537 777969 HC_gene_0440_tx_3 1 + 776537 777969 . 2 532,815 0,618 -chrII 776537 778177 HC_gene_0440_tx_4 2 + 776537 778177 . 1 1641 0 -chrII 776767 777912 HC_gene_0440_tx_5 4 + 776767 777912 . 1 1146 0 -chrII 776767 777969 HC_gene_0440_tx_6 3 + 776767 777969 . 1 1203 0 -chrII 776900 777912 HC_gene_0440_tx_7 2 + 776900 777912 . 1 1013 0 -chrII 776900 777969 HC_gene_0440_tx_8 4 + 776900 777969 . 1 1070 0 -chrII 776900 777969 HC_gene_0440_tx_9 1 + 776900 777969 . 2 949,41 0,1029 -chrII 777027 777912 HC_gene_0440_tx_10 2 + 777027 777912 . 1 886 0 -chrII 777027 777969 HC_gene_0440_tx_11 11 + 777027 777969 . 1 943 0 -chrII 777279 777912 HC_gene_0440_tx_12 3 + 777279 777912 . 1 634 0 -chrII 777279 777969 HC_gene_0440_tx_13 7 + 777279 777969 . 1 691 0 -chrII 777397 777912 HC_gene_0440_tx_14 4 + 777397 777912 . 1 516 0 -chrII 777397 777969 HC_gene_0440_tx_15 5 + 777397 777969 . 1 573 0 -chrII 777397 778177 HC_gene_0440_tx_16 1 + 777397 778177 . 1 781 0 -chrII 777895 779509 MC_gene_0767_tx_1 1 - 777895 779509 . 1 1615 0 -chrII 778498 779305 MC_gene_0441_tx_1 1 + 778498 779305 . 1 808 0 -chrII 779629 782442 HC_gene_0442_tx_1 3 + 779629 782442 . 1 2814 0 -chrII 779756 782442 HC_gene_0442_tx_2 1 + 779756 782442 . 1 2687 0 -chrII 779837 782442 HC_gene_0442_tx_3 1 + 779837 782442 . 1 2606 0 -chrII 780236 782442 HC_gene_0442_tx_4 2 + 780236 782442 . 1 2207 0 -chrII 782166 782442 HC_gene_0442_tx_5 4 + 782166 782442 . 1 277 0 -chrII 782583 782904 HC_gene_0443_tx_1 4 + 782583 782904 . 1 322 0 -chrII 782583 783164 HC_gene_0443_tx_2 2 + 782583 783164 . 1 582 0 -chrII 782583 783686 HC_gene_0443_tx_3 58 + 782583 783686 . 1 1104 0 -chrII 782583 783686 HC_gene_0443_tx_4 1 + 782583 783686 . 2 186,840 0,264 -chrII 782775 783686 HC_gene_0443_tx_5 14 + 782775 783686 . 1 912 0 -chrII 782775 783686 HC_gene_0443_tx_6 1 + 782775 783686 . 2 228,607 0,305 -chrII 783099 783686 HC_gene_0443_tx_7 17 + 783099 783686 . 1 588 0 -chrII 783576 784264 HC_gene_0768_tx_1 31 - 783576 784264 . 1 689 0 -chrII 783576 784609 HC_gene_0768_tx_2 180 - 783576 784609 . 1 1034 0 -chrII 783811 784710 MC_gene_0444_tx_1 1 + 783811 784710 . 1 900 0 -chrII 784961 785753 HC_gene_0769_tx_1 11 - 784961 785753 . 1 793 0 -chrII 785428 786421 HC_gene_0445_tx_1 2 + 785428 786421 . 1 994 0 -chrII 786008 786243 HC_gene_0445_tx_2 1 + 786008 786243 . 1 236 0 -chrII 786008 786300 HC_gene_0445_tx_3 2 + 786008 786300 . 1 293 0 -chrII 786008 786421 HC_gene_0445_tx_4 19 + 786008 786421 . 1 414 0 -chrII 786008 786666 HC_gene_0445_tx_5 5 + 786008 786666 . 1 659 0 -chrII 786287 786870 HC_gene_0770_tx_1 30 - 786287 786870 . 1 584 0 -chrII 786548 786870 HC_gene_0770_tx_2 5 - 786548 786870 . 1 323 0 -chrII 787092 788639 HC_gene_0446_tx_1 30 + 787092 788639 . 1 1548 0 -chrII 787092 788718 HC_gene_0446_tx_2 1 + 787092 788718 . 1 1627 0 -chrII 787092 788792 HC_gene_0446_tx_3 1 + 787092 788792 . 1 1701 0 -chrII 789058 792068 HC_gene_0771_tx_1 2 - 789058 792068 . 1 3011 0 -chrII 791475 791888 MC_gene_0447_tx_1 1 + 791475 791888 . 1 414 0 -chrII 792034 792561 HC_gene_0772_tx_1 1 - 792034 792561 . 1 528 0 -chrII 792034 792568 HC_gene_0772_tx_2 1 - 792034 792568 . 1 535 0 -chrII 792092 792561 HC_gene_0772_tx_3 2 - 792092 792561 . 1 470 0 -chrII 792261 792561 HC_gene_0772_tx_4 7 - 792261 792561 . 1 301 0 -chrII 792436 796655 HC_gene_0448_tx_1 1 + 792436 796655 . 1 4220 0 -chrII 792686 792997 LC_gene_0773_tx_1 1 - 792686 792997 . 1 312 0 -chrII 792797 796655 HC_gene_0448_tx_2 1 + 792797 796655 . 1 3859 0 -chrII 796542 798894 MC_gene_0774_tx_1 1 - 796542 798894 . 1 2353 0 -chrII 796555 797599 MC_gene_0774_tx_2 1 - 796555 797599 . 1 1045 0 -chrII 796702 798929 MC_gene_0449_tx_1 1 + 796702 798929 . 1 2228 0 -chrII 799236 799595 MC_gene_0450_tx_1 1 + 799236 799595 . 1 360 0 -chrII 799328 799508 MC_gene_0450_tx_2 1 + 799328 799508 . 1 181 0 -chrII 799330 799985 MC_gene_0775_tx_1 1 - 799330 799985 . 1 656 0 -chrII 800472 802166 HC_gene_0451_tx_1 33 + 800472 802166 . 1 1695 0 -chrII 802540 804896 HC_gene_0776_tx_1 17 - 802540 804896 . 1 2357 0 -chrII 802540 804896 HC_gene_0776_tx_2 1 - 802540 804896 . 2 1146,638 0,1719 -chrII 804482 804896 HC_gene_0776_tx_3 1 - 804482 804896 . 1 415 0 -chrII 805329 807241 MC_gene_0452_tx_1 1 + 805329 807241 . 2 890,985 0,928 -chrII 806155 807165 MC_gene_0777_tx_1 1 - 806155 807165 . 1 1011 0 -chrII 807218 808376 HC_gene_0453_tx_1 2 + 807218 808376 . 1 1159 0 -chrII 807362 808376 HC_gene_0453_tx_2 15 + 807362 808376 . 1 1015 0 -chrII 808306 809375 MC_gene_0778_tx_1 1 - 808306 809375 . 1 1070 0 -chrII 808583 809537 LC_gene_0454_tx_1 1 + 808583 809537 . 1 955 0 -chrII 809455 809742 MC_gene_0779_tx_1 1 - 809455 809742 . 1 288 0 -chrII 809994 811865 LC_gene_0455_tx_1 1 + 809994 811865 . 1 1872 0 -chrII 810261 811484 MC_gene_0780_tx_1 1 - 810261 811484 . 1 1224 0 -chrIII 1285 1835 LC_gene_0912_tx_1 1 - 1285 1835 . 1 551 0 -chrIII 1407 4281 LC_gene_0781_tx_1 1 + 1407 4281 . 1 2875 0 -chrIII 15384 16679 HC_gene_0913_tx_1 1 - 15384 16679 . 1 1296 0 -chrIII 15384 16899 HC_gene_0913_tx_2 1 - 15384 16899 . 2 354,983 0,533 -chrIII 15703 16264 HC_gene_0913_tx_3 7 - 15703 16264 . 1 562 0 -chrIII 15703 16595 HC_gene_0913_tx_4 3 - 15703 16595 . 1 893 0 -chrIII 15703 16679 HC_gene_0913_tx_5 5 - 15703 16679 . 1 977 0 -chrIII 15703 16899 HC_gene_0913_tx_6 15 - 15703 16899 . 1 1197 0 -chrIII 15703 16899 HC_gene_0913_tx_7 1 - 15703 16899 . 2 397,713 0,484 -chrIII 15703 19134 HC_gene_0913_tx_8 1 - 15703 19134 . 1 3432 0 -chrIII 15703 20132 HC_gene_0913_tx_9 1 - 15703 20132 . 1 4430 0 -chrIII 17273 18710 HC_gene_0782_tx_1 34 + 17273 18710 . 1 1438 0 -chrIII 17273 18710 HC_gene_0782_tx_2 1 + 17273 18710 . 2 161,381 0,1057 -chrIII 17273 18710 HC_gene_0782_tx_3 1 + 17273 18710 . 2 549,537 0,901 -chrIII 22089 22540 LC_gene_0783_tx_1 1 + 22089 22540 . 1 452 0 -chrIII 22316 22641 HC_gene_0914_tx_1 43 - 22316 22641 . 1 326 0 -chrIII 22316 22844 HC_gene_0914_tx_2 98 - 22316 22844 . 1 529 0 -chrIII 22316 22917 HC_gene_0914_tx_3 20 - 22316 22917 . 1 602 0 -chrIII 22316 23215 HC_gene_0914_tx_4 17 - 22316 23215 . 1 900 0 -chrIII 22316 23405 HC_gene_0914_tx_5 295 - 22316 23405 . 1 1090 0 -chrIII 22316 23405 HC_gene_0914_tx_6 1 - 22316 23405 . 2 493,468 0,622 -chrIII 22316 23405 HC_gene_0914_tx_7 1 - 22316 23405 . 2 635,153 0,937 -chrIII 22316 23405 HC_gene_0914_tx_8 1 - 22316 23405 . 2 424,584 0,506 -chrIII 22316 23405 HC_gene_0914_tx_9 1 - 22316 23405 . 2 505,521 0,569 -chrIII 22316 23405 HC_gene_0914_tx_10 1 - 22316 23405 . 2 635,109 0,981 -chrIII 23561 23988 HC_gene_0784_tx_1 314 + 23561 23988 . 1 428 0 -chrIII 23888 24352 HC_gene_0915_tx_1 771 - 23888 24352 . 1 465 0 -chrIII 24781 27037 HC_gene_0785_tx_1 114 + 24781 27037 . 1 2257 0 -chrIII 25294 27037 HC_gene_0785_tx_2 10 + 25294 27037 . 1 1744 0 -chrIII 26349 27037 HC_gene_0785_tx_3 49 + 26349 27037 . 1 689 0 -chrIII 26904 27362 HC_gene_0916_tx_1 139 - 26904 27362 . 1 459 0 -chrIII 26904 27563 HC_gene_0916_tx_2 154 - 26904 27563 . 1 660 0 -chrIII 26904 27641 HC_gene_0916_tx_3 22 - 26904 27641 . 1 738 0 -chrIII 27913 29015 HC_gene_0786_tx_1 12 + 27913 29015 . 1 1103 0 -chrIII 27913 29016 HC_gene_0786_tx_2 3 + 27913 29016 . 1 1104 0 -chrIII 27913 29017 HC_gene_0786_tx_3 6 + 27913 29017 . 1 1105 0 -chrIII 27913 29018 HC_gene_0786_tx_4 17 + 27913 29018 . 1 1106 0 -chrIII 27913 29019 HC_gene_0786_tx_5 2 + 27913 29019 . 1 1107 0 -chrIII 27913 29020 HC_gene_0786_tx_6 41 + 27913 29020 . 1 1108 0 -chrIII 27913 29022 HC_gene_0786_tx_7 1 + 27913 29022 . 1 1110 0 -chrIII 27913 29023 HC_gene_0786_tx_8 1 + 27913 29023 . 1 1111 0 -chrIII 27913 29025 HC_gene_0786_tx_9 1 + 27913 29025 . 1 1113 0 -chrIII 27913 29027 HC_gene_0786_tx_10 1 + 27913 29027 . 1 1115 0 -chrIII 27913 29031 HC_gene_0786_tx_11 2 + 27913 29031 . 1 1119 0 -chrIII 27913 29124 HC_gene_0786_tx_12 49 + 27913 29124 . 1 1212 0 -chrIII 27913 29559 HC_gene_0786_tx_13 4 + 27913 29559 . 1 1647 0 -chrIII 29050 29559 HC_gene_0786_tx_14 5 + 29050 29559 . 1 510 0 -chrIII 29355 29559 HC_gene_0786_tx_15 1 + 29355 29559 . 1 205 0 -chrIII 29355 30130 HC_gene_0786_tx_16 1 + 29355 30130 . 1 776 0 -chrIII 30783 31198 MC_gene_0917_tx_1 1 - 30783 31198 . 1 416 0 -chrIII 31431 33260 HC_gene_0787_tx_1 3 + 31431 33260 . 1 1830 0 -chrIII 31431 34156 HC_gene_0787_tx_2 1 + 31431 34156 . 2 94,2575 0,151 -chrIII 31431 34156 HC_gene_0787_tx_3 38 + 31431 34156 . 1 2726 0 -chrIII 31431 34156 HC_gene_0787_tx_4 1 + 31431 34156 . 2 2008,645 0,2081 -chrIII 31431 34156 HC_gene_0787_tx_5 1 + 31431 34156 . 2 1555,1089 0,1637 -chrIII 31431 34156 HC_gene_0787_tx_6 1 + 31431 34156 . 2 988,1399 0,1327 -chrIII 31431 34156 HC_gene_0787_tx_7 1 + 31431 34156 . 2 1887,784 0,1942 -chrIII 31431 34156 HC_gene_0787_tx_8 1 + 31431 34156 . 3 174,1035,1190 0,439,1536 -chrIII 31431 34156 HC_gene_0787_tx_9 1 + 31431 34156 . 2 307,2116 0,610 -chrIII 32123 34156 HC_gene_0787_tx_10 6 + 32123 34156 . 1 2034 0 -chrIII 32123 34156 HC_gene_0787_tx_11 1 + 32123 34156 . 2 1031,946 0,1088 -chrIII 32343 34156 HC_gene_0787_tx_12 6 + 32343 34156 . 1 1814 0 -chrIII 32427 34156 HC_gene_0787_tx_13 7 + 32427 34156 . 1 1730 0 -chrIII 32721 34156 HC_gene_0787_tx_14 9 + 32721 34156 . 1 1436 0 -chrIII 32986 33260 HC_gene_0787_tx_16 1 + 32986 33260 . 1 275 0 -chrIII 32986 34156 HC_gene_0787_tx_15 13 + 32986 34156 . 1 1171 0 -chrIII 33496 34156 HC_gene_0787_tx_17 16 + 33496 34156 . 1 661 0 -chrIII 34025 34945 HC_gene_0918_tx_1 14 - 34025 34945 . 1 921 0 -chrIII 34025 35437 HC_gene_0918_tx_2 55 - 34025 35437 . 1 1413 0 -chrIII 34025 35437 HC_gene_0918_tx_3 1 - 34025 35437 . 2 795,308 0,1105 -chrIII 34025 35437 HC_gene_0918_tx_4 1 - 34025 35437 . 2 751,594 0,819 -chrIII 34025 35437 HC_gene_0918_tx_5 1 - 34025 35437 . 2 873,392 0,1021 -chrIII 34025 35437 HC_gene_0918_tx_6 1 - 34025 35437 . 2 226,682 0,731 -chrIII 34025 35437 HC_gene_0918_tx_7 1 - 34025 35437 . 2 648,652 0,761 -chrIII 35578 37729 HC_gene_0788_tx_1 24 + 35578 37729 . 1 2152 0 -chrIII 35578 37729 HC_gene_0788_tx_2 1 + 35578 37729 . 2 908,931 0,1221 -chrIII 35578 37729 HC_gene_0788_tx_3 1 + 35578 37729 . 2 1196,820 0,1332 -chrIII 35578 37729 HC_gene_0788_tx_4 1 + 35578 37729 . 2 311,1786 0,366 -chrIII 35578 37729 HC_gene_0788_tx_5 1 + 35578 37729 . 2 145,1821 0,331 -chrIII 35578 37847 HC_gene_0788_tx_6 4 + 35578 37847 . 1 2270 0 -chrIII 35897 37356 LC_gene_0919_tx_1 1 - 35897 37356 . 1 1460 0 -chrIII 37727 38459 HC_gene_0920_tx_1 25 - 37727 38459 . 1 733 0 -chrIII 37727 38629 HC_gene_0920_tx_2 175 - 37727 38629 . 1 903 0 -chrIII 37727 38629 HC_gene_0920_tx_3 1 - 37727 38629 . 2 566,286 0,617 -chrIII 37727 38701 HC_gene_0920_tx_4 38 - 37727 38701 . 1 975 0 -chrIII 37727 38864 HC_gene_0920_tx_5 484 - 37727 38864 . 1 1138 0 -chrIII 37727 38864 HC_gene_0920_tx_6 1 - 37727 38864 . 2 747,199 0,939 -chrIII 37727 38864 HC_gene_0920_tx_7 1 - 37727 38864 . 2 840,97 0,1041 -chrIII 37727 38864 HC_gene_0920_tx_8 1 - 37727 38864 . 2 786,199 0,939 -chrIII 37727 38864 HC_gene_0920_tx_9 1 - 37727 38864 . 2 770,213 0,925 -chrIII 37727 38864 HC_gene_0920_tx_10 1 - 37727 38864 . 2 909,112 0,1026 -chrIII 37727 38864 HC_gene_0920_tx_11 1 - 37727 38864 . 2 498,232 0,906 -chrIII 37727 38864 HC_gene_0920_tx_12 1 - 37727 38864 . 2 820,213 0,925 -chrIII 37727 38864 HC_gene_0920_tx_13 1 - 37727 38864 . 2 795,213 0,925 -chrIII 37727 38864 HC_gene_0920_tx_14 1 - 37727 38864 . 2 809,232 0,906 -chrIII 37727 38864 HC_gene_0920_tx_15 1 - 37727 38864 . 2 499,307 0,831 -chrIII 37727 38864 HC_gene_0920_tx_16 1 - 37727 38864 . 2 551,261 0,877 -chrIII 37727 38864 HC_gene_0920_tx_17 1 - 37727 38864 . 2 590,304 0,834 -chrIII 37727 39448 HC_gene_0920_tx_18 7 - 37727 39448 . 1 1722 0 -chrIII 37727 39448 HC_gene_0920_tx_19 1 - 37727 39448 . 2 554,959 0,763 -chrIII 39026 39505 MC_gene_0789_tx_1 1 + 39026 39505 . 1 480 0 -chrIII 39049 39359 MC_gene_0789_tx_2 1 + 39049 39359 . 1 311 0 -chrIII 39647 40358 HC_gene_0921_tx_1 16 - 39647 40358 . 1 712 0 -chrIII 39647 40625 HC_gene_0921_tx_2 9 - 39647 40625 . 1 979 0 -chrIII 39647 40780 HC_gene_0921_tx_3 108 - 39647 40780 . 1 1134 0 -chrIII 39667 41066 MC_gene_0790_tx_1 1 + 39667 41066 . 1 1400 0 -chrIII 41064 41395 HC_gene_0791_tx_1 7 + 41064 41395 . 1 332 0 -chrIII 41275 41860 MC_gene_0922_tx_1 1 - 41275 41860 . 1 586 0 -chrIII 41311 41707 MC_gene_0922_tx_2 1 - 41311 41707 . 1 397 0 -chrIII 41434 41961 MC_gene_0792_tx_1 1 + 41434 41961 . 1 528 0 -chrIII 41845 43221 LC_gene_0923_tx_1 1 - 41845 43221 . 1 1377 0 -chrIII 42135 43650 MC_gene_0793_tx_1 1 + 42135 43650 . 2 271,899 0,617 -chrIII 43468 44051 HC_gene_0924_tx_1 1 - 43468 44051 . 1 584 0 -chrIII 43468 44051 HC_gene_0924_tx_2 1 - 43468 44051 . 2 290,189 0,395 -chrIII 43468 44456 HC_gene_0924_tx_4 5 - 43468 44456 . 1 989 0 -chrIII 43568 43914 HC_gene_0924_tx_8 19 - 43568 43914 . 1 347 0 -chrIII 43568 44051 HC_gene_0924_tx_3 9 - 43568 44051 . 1 484 0 -chrIII 43568 44374 HC_gene_0924_tx_5 5 - 43568 44374 . 1 807 0 -chrIII 43568 44456 HC_gene_0924_tx_6 84 - 43568 44456 . 1 889 0 -chrIII 43568 44456 HC_gene_0924_tx_7 1 - 43568 44456 . 2 388,344 0,545 -chrIII 44573 45195 HC_gene_0925_tx_1 24 - 44573 45195 . 1 623 0 -chrIII 44573 45281 HC_gene_0925_tx_2 24 - 44573 45281 . 1 709 0 -chrIII 44573 45714 HC_gene_0925_tx_3 19 - 44573 45714 . 1 1142 0 -chrIII 44573 46529 HC_gene_0925_tx_4 8 - 44573 46529 . 1 1957 0 -chrIII 44573 46776 HC_gene_0925_tx_5 11 - 44573 46776 . 1 2204 0 -chrIII 44573 46776 HC_gene_0925_tx_6 1 - 44573 46776 . 2 628,1483 0,721 -chrIII 44573 46946 HC_gene_0925_tx_7 63 - 44573 46946 . 1 2374 0 -chrIII 44573 46946 HC_gene_0925_tx_8 1 - 44573 46946 . 2 1715,278 0,2096 -chrIII 44573 46946 HC_gene_0925_tx_9 1 - 44573 46946 . 2 766,1305 0,1069 -chrIII 44573 46946 HC_gene_0925_tx_10 1 - 44573 46946 . 2 380,327 0,2047 -chrIII 44647 46503 LC_gene_0794_tx_1 1 + 44647 46503 . 1 1857 0 -chrIII 46548 47079 LC_gene_0795_tx_1 1 + 46548 47079 . 1 532 0 -chrIII 46935 48336 HC_gene_0926_tx_1 1 - 46935 48336 . 1 1402 0 -chrIII 46935 48350 HC_gene_0926_tx_2 1 - 46935 48350 . 1 1416 0 -chrIII 46935 48368 HC_gene_0926_tx_3 1 - 46935 48368 . 1 1434 0 -chrIII 46935 48380 HC_gene_0926_tx_4 1 - 46935 48380 . 1 1446 0 -chrIII 46935 48386 HC_gene_0926_tx_5 1 - 46935 48386 . 1 1452 0 -chrIII 46935 48389 HC_gene_0926_tx_6 1 - 46935 48389 . 1 1455 0 -chrIII 46936 48395 HC_gene_0926_tx_7 1 - 46936 48395 . 1 1460 0 -chrIII 46941 48378 HC_gene_0926_tx_8 1 - 46941 48378 . 1 1438 0 -chrIII 46941 48389 HC_gene_0926_tx_9 1 - 46941 48389 . 1 1449 0 -chrIII 47445 48302 MC_gene_0796_tx_1 1 + 47445 48302 . 1 858 0 -chrIII 48554 49146 HC_gene_0927_tx_1 134 - 48554 49146 . 1 593 0 -chrIII 48554 49146 HC_gene_0927_tx_2 1 - 48554 49146 . 2 444,95 0,498 -chrIII 48554 49456 HC_gene_0927_tx_3 50 - 48554 49456 . 1 903 0 -chrIII 48554 49513 HC_gene_0927_tx_4 122 - 48554 49513 . 1 960 0 -chrIII 48554 49513 HC_gene_0927_tx_5 1 - 48554 49513 . 2 693,150 0,810 -chrIII 48554 49513 HC_gene_0927_tx_6 1 - 48554 49513 . 2 570,334 0,626 -chrIII 48554 49723 HC_gene_0927_tx_7 53 - 48554 49723 . 1 1170 0 -chrIII 48554 49723 HC_gene_0927_tx_8 1 - 48554 49723 . 2 570,528 0,642 -chrIII 48554 49850 HC_gene_0927_tx_9 96 - 48554 49850 . 1 1297 0 -chrIII 48554 49850 HC_gene_0927_tx_10 1 - 48554 49850 . 2 343,266 0,1031 -chrIII 48554 49850 HC_gene_0927_tx_11 1 - 48554 49850 . 2 523,118 0,1179 -chrIII 48554 49850 HC_gene_0927_tx_12 1 - 48554 49850 . 2 1116,119 0,1178 -chrIII 48554 49993 HC_gene_0927_tx_13 55 - 48554 49993 . 1 1440 0 -chrIII 48554 49993 HC_gene_0927_tx_14 1 - 48554 49993 . 2 564,83 0,1357 -chrIII 48554 49993 HC_gene_0927_tx_15 1 - 48554 49993 . 2 876,442 0,998 -chrIII 48554 49993 HC_gene_0927_tx_16 1 - 48554 49993 . 2 835,442 0,998 -chrIII 48554 49993 HC_gene_0927_tx_17 1 - 48554 49993 . 2 835,448 0,992 -chrIII 48554 50010 HC_gene_0927_tx_18 1 - 48554 50010 . 2 1134,162 0,1295 -chrIII 48554 50143 HC_gene_0927_tx_19 28 - 48554 50143 . 1 1590 0 -chrIII 48554 50259 HC_gene_0927_tx_20 503 - 48554 50259 . 1 1706 0 -chrIII 48554 50259 HC_gene_0927_tx_21 1 - 48554 50259 . 2 495,1147 0,559 -chrIII 48644 50367 HC_gene_0797_tx_1 1 + 48644 50367 . 1 1724 0 -chrIII 50404 52496 HC_gene_0798_tx_1 4 + 50404 52496 . 1 2093 0 -chrIII 50795 52496 HC_gene_0798_tx_2 625 + 50795 52496 . 1 1702 0 -chrIII 50795 52496 HC_gene_0798_tx_3 2 + 50795 52496 . 2 1016,623 0,1079 -chrIII 50795 52496 HC_gene_0798_tx_4 1 + 50795 52496 . 2 904,660 0,1042 -chrIII 50795 52496 HC_gene_0798_tx_5 1 + 50795 52496 . 2 1603,52 0,1650 -chrIII 50795 52496 HC_gene_0798_tx_6 1 + 50795 52496 . 2 136,1415 0,287 -chrIII 50795 52496 HC_gene_0798_tx_7 1 + 50795 52496 . 2 995,660 0,1042 -chrIII 50795 52496 HC_gene_0798_tx_8 1 + 50795 52496 . 2 878,762 0,940 -chrIII 50795 52496 HC_gene_0798_tx_9 1 + 50795 52496 . 2 995,641 0,1061 -chrIII 50795 52496 HC_gene_0798_tx_10 2 + 50795 52496 . 2 860,747 0,955 -chrIII 50795 52496 HC_gene_0798_tx_11 1 + 50795 52496 . 2 979,654 0,1048 -chrIII 50795 52496 HC_gene_0798_tx_12 1 + 50795 52496 . 2 869,751 0,951 -chrIII 50795 52496 HC_gene_0798_tx_13 1 + 50795 52496 . 2 266,1164 0,538 -chrIII 50795 52496 HC_gene_0798_tx_14 1 + 50795 52496 . 2 979,648 0,1054 -chrIII 50795 52496 HC_gene_0798_tx_15 1 + 50795 52496 . 2 897,677 0,1025 -chrIII 50795 52496 HC_gene_0798_tx_16 1 + 50795 52496 . 2 1020,576 0,1126 -chrIII 50795 52496 HC_gene_0798_tx_17 1 + 50795 52496 . 2 1549,65 0,1637 -chrIII 50795 52496 HC_gene_0798_tx_18 1 + 50795 52496 . 2 900,660 0,1042 -chrIII 50795 52496 HC_gene_0798_tx_19 1 + 50795 52496 . 2 1080,566 0,1136 -chrIII 50795 52496 HC_gene_0798_tx_20 1 + 50795 52496 . 2 1550,65 0,1637 -chrIII 50795 52496 HC_gene_0798_tx_21 1 + 50795 52496 . 2 1537,65 0,1637 -chrIII 50795 52496 HC_gene_0798_tx_22 1 + 50795 52496 . 2 881,711 0,991 -chrIII 50795 52496 HC_gene_0798_tx_23 2 + 50795 52496 . 2 1584,65 0,1637 -chrIII 50795 52496 HC_gene_0798_tx_24 1 + 50795 52496 . 2 1574,65 0,1637 -chrIII 50795 52496 HC_gene_0798_tx_25 1 + 50795 52496 . 2 1587,42 0,1660 -chrIII 50829 52496 HC_gene_0798_tx_26 1 + 50829 52496 . 3 897,597,37 0,969,1631 -chrIII 51075 52496 HC_gene_0798_tx_27 80 + 51075 52496 . 1 1422 0 -chrIII 51075 52496 HC_gene_0798_tx_28 1 + 51075 52496 . 2 1315,37 0,1385 -chrIII 51075 52496 HC_gene_0798_tx_29 1 + 51075 52496 . 2 1288,65 0,1357 -chrIII 51075 52496 HC_gene_0798_tx_30 1 + 51075 52496 . 2 144,1164 0,258 -chrIII 51075 52496 HC_gene_0798_tx_31 1 + 51075 52496 . 2 1092,201 0,1221 -chrIII 51075 52496 HC_gene_0798_tx_32 1 + 51075 52496 . 2 1249,29 0,1393 -chrIII 51179 52496 HC_gene_0798_tx_33 46 + 51179 52496 . 1 1318 0 -chrIII 51179 52496 HC_gene_0798_tx_34 1 + 51179 52496 . 2 1241,29 0,1289 -chrIII 51453 52496 HC_gene_0798_tx_35 163 + 51453 52496 . 1 1044 0 -chrIII 51453 52496 HC_gene_0798_tx_36 1 + 51453 52496 . 2 916,29 0,1015 -chrIII 51453 52496 HC_gene_0798_tx_37 1 + 51453 52496 . 2 926,65 0,979 -chrIII 51453 52496 HC_gene_0798_tx_38 1 + 51453 52496 . 2 937,37 0,1007 -chrIII 51708 52496 HC_gene_0798_tx_39 138 + 51708 52496 . 1 789 0 -chrIII 51708 52496 HC_gene_0798_tx_40 1 + 51708 52496 . 2 703,42 0,747 -chrIII 51708 52496 HC_gene_0798_tx_41 1 + 51708 52496 . 2 634,97 0,692 -chrIII 51837 52496 HC_gene_0798_tx_42 93 + 51837 52496 . 1 660 0 -chrIII 51837 52496 HC_gene_0798_tx_43 1 + 51837 52496 . 2 563,51 0,609 -chrIII 52002 52496 HC_gene_0798_tx_44 125 + 52002 52496 . 1 495 0 -chrIII 52379 53943 LC_gene_0928_tx_1 1 - 52379 53943 . 1 1565 0 -chrIII 52624 54959 HC_gene_0799_tx_1 12 + 52624 54959 . 1 2336 0 -chrIII 52624 54959 HC_gene_0799_tx_2 1 + 52624 54959 . 2 1048,1201 0,1135 -chrIII 54231 54959 HC_gene_0799_tx_3 19 + 54231 54959 . 1 729 0 -chrIII 54864 55776 HC_gene_0929_tx_1 5 - 54864 55776 . 1 913 0 -chrIII 54864 56309 HC_gene_0929_tx_2 6 - 54864 56309 . 1 1446 0 -chrIII 54864 56584 HC_gene_0929_tx_3 46 - 54864 56584 . 1 1721 0 -chrIII 54864 56584 HC_gene_0929_tx_4 1 - 54864 56584 . 2 1330,140 0,1581 -chrIII 55145 56606 MC_gene_0800_tx_1 1 + 55145 56606 . 1 1462 0 -chrIII 56800 58026 HC_gene_0930_tx_1 3 - 56800 58026 . 1 1227 0 -chrIII 56800 58105 HC_gene_0930_tx_2 4 - 56800 58105 . 1 1306 0 -chrIII 56800 58188 HC_gene_0930_tx_3 4 - 56800 58188 . 1 1389 0 -chrIII 56800 58440 HC_gene_0930_tx_4 5 - 56800 58440 . 1 1641 0 -chrIII 56800 58440 HC_gene_0930_tx_5 1 - 56800 58440 . 2 1189,402 0,1239 -chrIII 56800 58580 HC_gene_0930_tx_6 3 - 56800 58580 . 1 1781 0 -chrIII 56800 58746 HC_gene_0930_tx_7 30 - 56800 58746 . 1 1947 0 -chrIII 56800 58746 HC_gene_0930_tx_8 1 - 56800 58746 . 2 954,418 0,1529 -chrIII 56800 58746 HC_gene_0930_tx_9 1 - 56800 58746 . 2 1284,136 0,1811 -chrIII 56886 57352 HC_gene_0801_tx_1 1 + 56886 57352 . 1 467 0 -chrIII 59045 60828 HC_gene_0802_tx_1 64 + 59045 60828 . 1 1784 0 -chrIII 59045 60828 HC_gene_0802_tx_2 1 + 59045 60828 . 2 1027,675 0,1109 -chrIII 59045 60828 HC_gene_0802_tx_3 1 + 59045 60828 . 2 965,713 0,1071 -chrIII 59045 60828 HC_gene_0802_tx_4 1 + 59045 60828 . 2 991,699 0,1085 -chrIII 60713 61038 HC_gene_0931_tx_1 158 - 60713 61038 . 1 326 0 -chrIII 60713 61238 HC_gene_0931_tx_2 1217 - 60713 61238 . 1 526 0 -chrIII 61445 62797 HC_gene_0803_tx_1 1 + 61445 62797 . 1 1353 0 -chrIII 61636 62797 HC_gene_0803_tx_2 94 + 61636 62797 . 1 1162 0 -chrIII 61636 62797 HC_gene_0803_tx_3 1 + 61636 62797 . 2 374,741 0,421 -chrIII 61727 62797 HC_gene_0803_tx_4 6 + 61727 62797 . 1 1071 0 -chrIII 62033 62797 HC_gene_0803_tx_5 14 + 62033 62797 . 1 765 0 -chrIII 62698 63233 HC_gene_0932_tx_1 161 - 62698 63233 . 1 536 0 -chrIII 63410 64584 HC_gene_0804_tx_1 8 + 63410 64584 . 1 1175 0 -chrIII 63410 64678 HC_gene_0804_tx_2 29 + 63410 64678 . 1 1269 0 -chrIII 63757 64584 HC_gene_0804_tx_3 2 + 63757 64584 . 1 828 0 -chrIII 63757 64678 HC_gene_0804_tx_4 5 + 63757 64678 . 1 922 0 -chrIII 64560 64988 HC_gene_0933_tx_1 46 - 64560 64988 . 1 429 0 -chrIII 64560 65351 HC_gene_0933_tx_2 41 - 64560 65351 . 1 792 0 -chrIII 64560 65602 HC_gene_0933_tx_3 271 - 64560 65602 . 1 1043 0 -chrIII 65792 66428 HC_gene_0934_tx_1 7 - 65792 66428 . 1 637 0 -chrIII 65792 66509 HC_gene_0934_tx_2 8 - 65792 66509 . 1 718 0 -chrIII 65792 67594 HC_gene_0934_tx_69 2 - 65792 67594 . 1 1803 0 -chrIII 65792 67594 HC_gene_0934_tx_70 1 - 65792 67594 . 2 812,941 0,862 -chrIII 65792 68177 HC_gene_0934_tx_100 3 - 65792 68177 . 1 2386 0 -chrIII 65792 68394 HC_gene_0934_tx_101 25 - 65792 68394 . 1 2603 0 -chrIII 65792 68394 HC_gene_0934_tx_102 1 - 65792 68394 . 2 824,1730 0,873 -chrIII 65793 66428 HC_gene_0934_tx_3 10 - 65793 66428 . 1 636 0 -chrIII 65793 66509 HC_gene_0934_tx_4 1 - 65793 66509 . 1 717 0 -chrIII 65793 67594 HC_gene_0934_tx_71 4 - 65793 67594 . 1 1802 0 -chrIII 65793 67594 HC_gene_0934_tx_72 1 - 65793 67594 . 2 310,1382 0,420 -chrIII 65793 68177 HC_gene_0934_tx_103 3 - 65793 68177 . 1 2385 0 -chrIII 65793 68394 HC_gene_0934_tx_104 19 - 65793 68394 . 1 2602 0 -chrIII 65794 66428 HC_gene_0934_tx_5 3 - 65794 66428 . 1 635 0 -chrIII 65794 67594 HC_gene_0934_tx_73 1 - 65794 67594 . 1 1801 0 -chrIII 65794 68177 HC_gene_0934_tx_105 1 - 65794 68177 . 1 2384 0 -chrIII 65794 68394 HC_gene_0934_tx_106 6 - 65794 68394 . 1 2601 0 -chrIII 65795 68177 HC_gene_0934_tx_107 1 - 65795 68177 . 1 2383 0 -chrIII 65795 68394 HC_gene_0934_tx_108 5 - 65795 68394 . 1 2600 0 -chrIII 65795 68394 HC_gene_0934_tx_109 1 - 65795 68394 . 2 827,1709 0,891 -chrIII 65796 66428 HC_gene_0934_tx_6 1 - 65796 66428 . 1 633 0 -chrIII 65796 67594 HC_gene_0934_tx_74 1 - 65796 67594 . 1 1799 0 -chrIII 65796 68394 HC_gene_0934_tx_110 2 - 65796 68394 . 1 2599 0 -chrIII 65797 66428 HC_gene_0934_tx_7 1 - 65797 66428 . 1 632 0 -chrIII 65797 66509 HC_gene_0934_tx_8 2 - 65797 66509 . 1 713 0 -chrIII 65797 67594 HC_gene_0934_tx_75 1 - 65797 67594 . 1 1798 0 -chrIII 65797 68394 HC_gene_0934_tx_111 5 - 65797 68394 . 1 2598 0 -chrIII 65798 66428 HC_gene_0934_tx_9 6 - 65798 66428 . 1 631 0 -chrIII 65798 66509 HC_gene_0934_tx_10 2 - 65798 66509 . 1 712 0 -chrIII 65798 68394 HC_gene_0934_tx_112 5 - 65798 68394 . 1 2597 0 -chrIII 65798 68394 HC_gene_0934_tx_113 1 - 65798 68394 . 2 1098,1444 0,1153 -chrIII 65799 66509 HC_gene_0934_tx_11 1 - 65799 66509 . 1 711 0 -chrIII 65800 66428 HC_gene_0934_tx_12 5 - 65800 66428 . 1 629 0 -chrIII 65800 66509 HC_gene_0934_tx_13 4 - 65800 66509 . 1 710 0 -chrIII 65800 68394 HC_gene_0934_tx_114 5 - 65800 68394 . 1 2595 0 -chrIII 65801 66428 HC_gene_0934_tx_14 1 - 65801 66428 . 1 628 0 -chrIII 65801 68394 HC_gene_0934_tx_115 3 - 65801 68394 . 1 2594 0 -chrIII 65802 66428 HC_gene_0934_tx_15 6 - 65802 66428 . 1 627 0 -chrIII 65802 66509 HC_gene_0934_tx_16 6 - 65802 66509 . 1 708 0 -chrIII 65802 67594 HC_gene_0934_tx_76 2 - 65802 67594 . 1 1793 0 -chrIII 65802 67594 HC_gene_0934_tx_77 1 - 65802 67594 . 2 791,941 0,852 -chrIII 65802 68177 HC_gene_0934_tx_116 3 - 65802 68177 . 1 2376 0 -chrIII 65802 68394 HC_gene_0934_tx_117 26 - 65802 68394 . 1 2593 0 -chrIII 65802 68394 HC_gene_0934_tx_118 1 - 65802 68394 . 2 1367,1103 0,1490 -chrIII 65803 66428 HC_gene_0934_tx_17 2 - 65803 66428 . 1 626 0 -chrIII 65803 66509 HC_gene_0934_tx_18 4 - 65803 66509 . 1 707 0 -chrIII 65803 68394 HC_gene_0934_tx_119 16 - 65803 68394 . 1 2592 0 -chrIII 65803 68394 HC_gene_0934_tx_120 1 - 65803 68394 . 2 475,2017 0,575 -chrIII 65804 67594 HC_gene_0934_tx_78 6 - 65804 67594 . 1 1791 0 -chrIII 65804 68177 HC_gene_0934_tx_121 2 - 65804 68177 . 1 2374 0 -chrIII 65804 68394 HC_gene_0934_tx_122 20 - 65804 68394 . 1 2591 0 -chrIII 65805 66428 HC_gene_0934_tx_19 6 - 65805 66428 . 1 624 0 -chrIII 65805 66509 HC_gene_0934_tx_20 3 - 65805 66509 . 1 705 0 -chrIII 65805 67594 HC_gene_0934_tx_79 2 - 65805 67594 . 1 1790 0 -chrIII 65805 67594 HC_gene_0934_tx_80 1 - 65805 67594 . 2 694,756 0,1034 -chrIII 65805 68177 HC_gene_0934_tx_123 2 - 65805 68177 . 1 2373 0 -chrIII 65805 68394 HC_gene_0934_tx_124 18 - 65805 68394 . 1 2590 0 -chrIII 65805 68394 HC_gene_0934_tx_125 1 - 65805 68394 . 2 1304,214 0,2376 -chrIII 65805 68394 HC_gene_0934_tx_126 1 - 65805 68394 . 2 1830,475 0,2115 -chrIII 65805 68394 HC_gene_0934_tx_127 1 - 65805 68394 . 2 1148,1359 0,1231 -chrIII 65806 67594 HC_gene_0934_tx_81 1 - 65806 67594 . 2 1113,475 0,1314 -chrIII 65806 68394 HC_gene_0934_tx_128 4 - 65806 68394 . 1 2589 0 -chrIII 65807 66428 HC_gene_0934_tx_21 1 - 65807 66428 . 1 622 0 -chrIII 65807 66509 HC_gene_0934_tx_22 1 - 65807 66509 . 1 703 0 -chrIII 65807 67594 HC_gene_0934_tx_82 2 - 65807 67594 . 1 1788 0 -chrIII 65807 68394 HC_gene_0934_tx_129 5 - 65807 68394 . 1 2588 0 -chrIII 65808 66428 HC_gene_0934_tx_23 4 - 65808 66428 . 1 621 0 -chrIII 65808 66509 HC_gene_0934_tx_24 1 - 65808 66509 . 1 702 0 -chrIII 65808 68394 HC_gene_0934_tx_130 4 - 65808 68394 . 1 2587 0 -chrIII 65809 66428 HC_gene_0934_tx_25 1 - 65809 66428 . 1 620 0 -chrIII 65809 66509 HC_gene_0934_tx_26 1 - 65809 66509 . 1 701 0 -chrIII 65809 67594 HC_gene_0934_tx_83 1 - 65809 67594 . 2 823,902 0,884 -chrIII 65809 68394 HC_gene_0934_tx_131 3 - 65809 68394 . 1 2586 0 -chrIII 65810 66428 HC_gene_0934_tx_27 1 - 65810 66428 . 1 619 0 -chrIII 65810 68394 HC_gene_0934_tx_132 1 - 65810 68394 . 1 2585 0 -chrIII 65811 66509 HC_gene_0934_tx_28 2 - 65811 66509 . 1 699 0 -chrIII 65811 68394 HC_gene_0934_tx_133 1 - 65811 68394 . 2 33,2503 0,81 -chrIII 65812 66428 HC_gene_0934_tx_29 5 - 65812 66428 . 1 617 0 -chrIII 65812 66509 HC_gene_0934_tx_30 4 - 65812 66509 . 1 698 0 -chrIII 65812 68394 HC_gene_0934_tx_134 17 - 65812 68394 . 1 2583 0 -chrIII 65813 66428 HC_gene_0934_tx_31 2 - 65813 66428 . 1 616 0 -chrIII 65813 66509 HC_gene_0934_tx_32 3 - 65813 66509 . 1 697 0 -chrIII 65813 67594 HC_gene_0934_tx_84 2 - 65813 67594 . 1 1782 0 -chrIII 65813 68394 HC_gene_0934_tx_135 15 - 65813 68394 . 1 2582 0 -chrIII 65814 66428 HC_gene_0934_tx_33 1 - 65814 66428 . 1 615 0 -chrIII 65814 66509 HC_gene_0934_tx_34 1 - 65814 66509 . 1 696 0 -chrIII 65814 68394 HC_gene_0934_tx_136 8 - 65814 68394 . 1 2581 0 -chrIII 65815 66509 HC_gene_0934_tx_35 1 - 65815 66509 . 1 695 0 -chrIII 65815 68394 HC_gene_0934_tx_137 1 - 65815 68394 . 1 2580 0 -chrIII 65817 68394 HC_gene_0934_tx_138 4 - 65817 68394 . 1 2578 0 -chrIII 65818 66428 HC_gene_0934_tx_36 1 - 65818 66428 . 1 611 0 -chrIII 65818 66509 HC_gene_0934_tx_37 1 - 65818 66509 . 1 692 0 -chrIII 65818 67594 HC_gene_0934_tx_85 1 - 65818 67594 . 1 1777 0 -chrIII 65818 68394 HC_gene_0934_tx_139 3 - 65818 68394 . 1 2577 0 -chrIII 65819 66428 HC_gene_0934_tx_38 1 - 65819 66428 . 1 610 0 -chrIII 65819 66509 HC_gene_0934_tx_39 1 - 65819 66509 . 1 691 0 -chrIII 65819 67594 HC_gene_0934_tx_86 1 - 65819 67594 . 1 1776 0 -chrIII 65819 68394 HC_gene_0934_tx_140 7 - 65819 68394 . 1 2576 0 -chrIII 65820 66509 HC_gene_0934_tx_40 1 - 65820 66509 . 1 690 0 -chrIII 65820 68394 HC_gene_0934_tx_141 3 - 65820 68394 . 1 2575 0 -chrIII 65822 68394 HC_gene_0934_tx_142 1 - 65822 68394 . 1 2573 0 -chrIII 65823 66509 HC_gene_0934_tx_41 1 - 65823 66509 . 1 687 0 -chrIII 65824 66428 HC_gene_0934_tx_42 1 - 65824 66428 . 1 605 0 -chrIII 65824 67594 HC_gene_0934_tx_87 2 - 65824 67594 . 1 1771 0 -chrIII 65824 68394 HC_gene_0934_tx_143 7 - 65824 68394 . 1 2571 0 -chrIII 65825 66428 HC_gene_0934_tx_43 4 - 65825 66428 . 1 604 0 -chrIII 65825 66509 HC_gene_0934_tx_44 4 - 65825 66509 . 1 685 0 -chrIII 65825 68177 HC_gene_0934_tx_144 2 - 65825 68177 . 1 2353 0 -chrIII 65825 68394 HC_gene_0934_tx_145 8 - 65825 68394 . 1 2570 0 -chrIII 65827 68394 HC_gene_0934_tx_146 1 - 65827 68394 . 1 2568 0 -chrIII 65828 68394 HC_gene_0934_tx_147 4 - 65828 68394 . 1 2567 0 -chrIII 65829 66428 HC_gene_0934_tx_45 1 - 65829 66428 . 1 600 0 -chrIII 65829 66509 HC_gene_0934_tx_46 1 - 65829 66509 . 1 681 0 -chrIII 65829 68177 HC_gene_0934_tx_148 3 - 65829 68177 . 1 2349 0 -chrIII 65829 68394 HC_gene_0934_tx_149 1 - 65829 68394 . 2 846,535 0,2031 -chrIII 65829 68394 HC_gene_0934_tx_150 4 - 65829 68394 . 1 2566 0 -chrIII 65831 66428 HC_gene_0934_tx_47 1 - 65831 66428 . 1 598 0 -chrIII 65832 68394 HC_gene_0934_tx_151 2 - 65832 68394 . 1 2563 0 -chrIII 65834 66509 HC_gene_0934_tx_48 2 - 65834 66509 . 1 676 0 -chrIII 65835 66428 HC_gene_0934_tx_49 1 - 65835 66428 . 1 594 0 -chrIII 65835 67594 HC_gene_0934_tx_88 1 - 65835 67594 . 1 1760 0 -chrIII 65835 68394 HC_gene_0934_tx_152 2 - 65835 68394 . 1 2560 0 -chrIII 65837 66509 HC_gene_0934_tx_50 3 - 65837 66509 . 1 673 0 -chrIII 65837 67594 HC_gene_0934_tx_89 1 - 65837 67594 . 1 1758 0 -chrIII 65837 68177 HC_gene_0934_tx_153 1 - 65837 68177 . 1 2341 0 -chrIII 65837 68394 HC_gene_0934_tx_154 6 - 65837 68394 . 1 2558 0 -chrIII 65837 68394 HC_gene_0934_tx_155 1 - 65837 68394 . 2 966,1436 0,1122 -chrIII 65838 66509 HC_gene_0934_tx_51 1 - 65838 66509 . 1 672 0 -chrIII 65838 67594 HC_gene_0934_tx_90 1 - 65838 67594 . 2 778,881 0,876 -chrIII 65838 68394 HC_gene_0934_tx_156 3 - 65838 68394 . 1 2557 0 -chrIII 65839 68394 HC_gene_0934_tx_157 3 - 65839 68394 . 1 2556 0 -chrIII 65840 66509 HC_gene_0934_tx_52 2 - 65840 66509 . 1 670 0 -chrIII 65840 67594 HC_gene_0934_tx_91 1 - 65840 67594 . 1 1755 0 -chrIII 65840 68394 HC_gene_0934_tx_158 6 - 65840 68394 . 1 2555 0 -chrIII 65841 66428 HC_gene_0934_tx_53 4 - 65841 66428 . 1 588 0 -chrIII 65841 68394 HC_gene_0934_tx_159 5 - 65841 68394 . 1 2554 0 -chrIII 65843 66428 HC_gene_0934_tx_54 11 - 65843 66428 . 1 586 0 -chrIII 65843 66509 HC_gene_0934_tx_55 5 - 65843 66509 . 1 667 0 -chrIII 65843 67594 HC_gene_0934_tx_92 1 - 65843 67594 . 1 1752 0 -chrIII 65843 68394 HC_gene_0934_tx_160 20 - 65843 68394 . 1 2552 0 -chrIII 65844 66428 HC_gene_0934_tx_56 2 - 65844 66428 . 1 585 0 -chrIII 65844 67594 HC_gene_0934_tx_93 1 - 65844 67594 . 1 1751 0 -chrIII 65844 68394 HC_gene_0934_tx_161 2 - 65844 68394 . 1 2551 0 -chrIII 65845 66428 HC_gene_0934_tx_57 1 - 65845 66428 . 2 219,325 0,259 -chrIII 65845 66428 HC_gene_0934_tx_58 7 - 65845 66428 . 1 584 0 -chrIII 65845 66509 HC_gene_0934_tx_59 4 - 65845 66509 . 1 665 0 -chrIII 65845 67594 HC_gene_0934_tx_94 4 - 65845 67594 . 1 1750 0 -chrIII 65845 68177 HC_gene_0934_tx_162 3 - 65845 68177 . 1 2333 0 -chrIII 65845 68394 HC_gene_0934_tx_163 20 - 65845 68394 . 1 2550 0 -chrIII 65845 68394 HC_gene_0934_tx_164 1 - 65845 68394 . 2 1486,346 0,2204 -chrIII 65846 66428 HC_gene_0934_tx_60 8 - 65846 66428 . 1 583 0 -chrIII 65846 66509 HC_gene_0934_tx_61 3 - 65846 66509 . 1 664 0 -chrIII 65846 67594 HC_gene_0934_tx_95 2 - 65846 67594 . 1 1749 0 -chrIII 65846 68177 HC_gene_0934_tx_165 5 - 65846 68177 . 1 2332 0 -chrIII 65846 68394 HC_gene_0934_tx_166 25 - 65846 68394 . 1 2549 0 -chrIII 65846 68394 HC_gene_0934_tx_167 1 - 65846 68394 . 2 1116,1370 0,1179 -chrIII 65847 66428 HC_gene_0934_tx_62 13 - 65847 66428 . 1 582 0 -chrIII 65847 66509 HC_gene_0934_tx_63 5 - 65847 66509 . 1 663 0 -chrIII 65847 67594 HC_gene_0934_tx_96 5 - 65847 67594 . 1 1748 0 -chrIII 65847 68394 HC_gene_0934_tx_168 23 - 65847 68394 . 1 2548 0 -chrIII 65848 67594 HC_gene_0934_tx_97 1 - 65848 67594 . 1 1747 0 -chrIII 65848 68394 HC_gene_0934_tx_169 1 - 65848 68394 . 1 2547 0 -chrIII 65849 66509 HC_gene_0934_tx_64 1 - 65849 66509 . 1 661 0 -chrIII 65849 68177 HC_gene_0934_tx_170 1 - 65849 68177 . 1 2329 0 -chrIII 65849 68394 HC_gene_0934_tx_171 7 - 65849 68394 . 1 2546 0 -chrIII 65850 66428 HC_gene_0934_tx_65 2 - 65850 66428 . 1 579 0 -chrIII 65850 66509 HC_gene_0934_tx_66 2 - 65850 66509 . 1 660 0 -chrIII 65850 67594 HC_gene_0934_tx_98 1 - 65850 67594 . 1 1745 0 -chrIII 65850 68394 HC_gene_0934_tx_172 25 - 65850 68394 . 1 2545 0 -chrIII 65850 68394 HC_gene_0934_tx_173 1 - 65850 68394 . 2 32,2452 0,93 -chrIII 65850 68394 HC_gene_0934_tx_174 1 - 65850 68394 . 2 1675,503 0,2042 -chrIII 65850 68394 HC_gene_0934_tx_175 1 - 65850 68394 . 2 736,1736 0,809 -chrIII 65851 66428 HC_gene_0934_tx_67 6 - 65851 66428 . 1 578 0 -chrIII 65851 66509 HC_gene_0934_tx_68 4 - 65851 66509 . 1 659 0 -chrIII 65851 67594 HC_gene_0934_tx_99 2 - 65851 67594 . 1 1744 0 -chrIII 65851 68394 HC_gene_0934_tx_176 1 - 65851 68394 . 2 949,1376 0,1168 -chrIII 65851 68394 HC_gene_0934_tx_177 16 - 65851 68394 . 1 2544 0 -chrIII 68349 69972 HC_gene_0935_tx_1 37 - 68349 69972 . 1 1624 0 -chrIII 68679 69369 LC_gene_0805_tx_1 1 + 68679 69369 . 1 691 0 -chrIII 69919 71441 HC_gene_0806_tx_1 4 + 69919 71441 . 1 1523 0 -chrIII 70091 71441 HC_gene_0806_tx_2 1 + 70091 71441 . 2 237,796 0,555 -chrIII 70111 71441 HC_gene_0806_tx_3 1 + 70111 71441 . 2 318,915 0,416 -chrIII 70111 71441 HC_gene_0806_tx_4 1 + 70111 71441 . 2 704,560 0,771 -chrIII 70111 71441 HC_gene_0806_tx_5 190 + 70111 71441 . 1 1331 0 -chrIII 70111 71441 HC_gene_0806_tx_6 1 + 70111 71441 . 2 895,324 0,1007 -chrIII 70111 71441 HC_gene_0806_tx_7 1 + 70111 71441 . 2 746,170 0,1161 -chrIII 70111 71441 HC_gene_0806_tx_8 1 + 70111 71441 . 2 75,365 0,966 -chrIII 70111 71441 HC_gene_0806_tx_9 1 + 70111 71441 . 2 152,716 0,615 -chrIII 70327 71441 HC_gene_0806_tx_10 25 + 70327 71441 . 1 1115 0 -chrIII 70487 71441 HC_gene_0806_tx_11 36 + 70487 71441 . 1 955 0 -chrIII 70487 71441 HC_gene_0806_tx_12 1 + 70487 71441 . 2 423,457 0,498 -chrIII 70703 71441 HC_gene_0806_tx_13 1 + 70703 71441 . 2 45,649 0,90 -chrIII 70704 71441 HC_gene_0806_tx_14 1 + 70704 71441 . 2 132,517 0,221 -chrIII 70750 71441 HC_gene_0806_tx_15 90 + 70750 71441 . 1 692 0 -chrIII 70750 71441 HC_gene_0806_tx_16 1 + 70750 71441 . 2 191,389 0,303 -chrIII 70835 71441 HC_gene_0806_tx_17 27 + 70835 71441 . 1 607 0 -chrIII 70945 71441 HC_gene_0806_tx_18 152 + 70945 71441 . 1 497 0 -chrIII 71373 73065 LC_gene_0936_tx_1 1 - 71373 73065 . 1 1693 0 -chrIII 71777 73421 HC_gene_0807_tx_1 73 + 71777 73421 . 1 1645 0 -chrIII 71777 73421 HC_gene_0807_tx_2 1 + 71777 73421 . 2 326,1226 0,419 -chrIII 71777 73421 HC_gene_0807_tx_3 1 + 71777 73421 . 2 1421,177 0,1468 -chrIII 73342 74022 HC_gene_0937_tx_1 58 - 73342 74022 . 1 681 0 -chrIII 73342 74086 HC_gene_0937_tx_2 11 - 73342 74086 . 1 745 0 -chrIII 73342 74086 HC_gene_0937_tx_3 1 - 73342 74086 . 2 274,422 0,323 -chrIII 74514 75825 LC_gene_0938_tx_1 1 - 74514 75825 . 1 1312 0 -chrIII 74651 75357 MC_gene_0808_tx_1 1 + 74651 75357 . 1 707 0 -chrIII 75923 76547 HC_gene_0939_tx_1 16 - 75923 76547 . 1 625 0 -chrIII 75923 77951 HC_gene_0939_tx_2 101 - 75923 77951 . 1 2029 0 -chrIII 75923 77951 HC_gene_0939_tx_3 1 - 75923 77951 . 2 1183,529 0,1500 -chrIII 75923 77951 HC_gene_0939_tx_4 1 - 75923 77951 . 2 1808,50 0,1979 -chrIII 75923 77951 HC_gene_0939_tx_5 1 - 75923 77951 . 2 1247,459 0,1570 -chrIII 75923 78090 HC_gene_0939_tx_6 1 - 75923 78090 . 1 2168 0 -chrIII 77722 78011 HC_gene_0809_tx_1 6 + 77722 78011 . 1 290 0 -chrIII 77901 78090 HC_gene_0939_tx_7 2 - 77901 78090 . 1 190 0 -chrIII 77901 78178 HC_gene_0939_tx_8 1 - 77901 78178 . 1 278 0 -chrIII 77901 78255 HC_gene_0939_tx_9 6 - 77901 78255 . 1 355 0 -chrIII 77901 78283 HC_gene_0939_tx_10 1 - 77901 78283 . 1 383 0 -chrIII 79099 82392 HC_gene_0810_tx_1 1 + 79099 82392 . 1 3294 0 -chrIII 81824 82312 LC_gene_0940_tx_1 1 - 81824 82312 . 1 489 0 -chrIII 82317 82889 MC_gene_0941_tx_1 1 - 82317 82889 . 1 573 0 -chrIII 82672 83514 MC_gene_0942_tx_1 1 - 82672 83514 . 1 843 0 -chrIII 82693 83306 MC_gene_0811_tx_1 1 + 82693 83306 . 1 614 0 -chrIII 82700 83231 MC_gene_0811_tx_2 1 + 82700 83231 . 1 532 0 -chrIII 83414 84302 HC_gene_0812_tx_1 4 + 83414 84302 . 1 889 0 -chrIII 83550 84302 HC_gene_0812_tx_2 4 + 83550 84302 . 1 753 0 -chrIII 83786 84096 HC_gene_0812_tx_3 2 + 83786 84096 . 1 311 0 -chrIII 83786 84302 HC_gene_0812_tx_4 15 + 83786 84302 . 1 517 0 -chrIII 83786 84713 HC_gene_0812_tx_5 1 + 83786 84713 . 2 726,97 0,831 -chrIII 84023 85308 MC_gene_0943_tx_1 1 - 84023 85308 . 2 246,294 0,992 -chrIII 87199 90727 MC_gene_0813_tx_1 1 + 87199 90727 . 1 3529 0 -chrIII 91186 92379 LC_gene_0944_tx_1 1 - 91186 92379 . 1 1194 0 -chrIII 91195 91659 MC_gene_0814_tx_1 1 + 91195 91659 . 1 465 0 -chrIII 91296 92518 MC_gene_0815_tx_1 1 + 91296 92518 . 1 1223 0 -chrIII 91314 92597 MC_gene_0815_tx_2 1 + 91314 92597 . 1 1284 0 -chrIII 92382 94365 HC_gene_0945_tx_1 4 - 92382 94365 . 1 1984 0 -chrIII 92475 93240 HC_gene_0945_tx_22 3 - 92475 93240 . 1 766 0 -chrIII 92475 93640 HC_gene_0945_tx_24 3 - 92475 93640 . 1 1166 0 -chrIII 92475 94066 HC_gene_0945_tx_2 1 - 92475 94066 . 2 719,796 0,796 -chrIII 92475 94066 HC_gene_0945_tx_3 3 - 92475 94066 . 1 1592 0 -chrIII 92475 94195 HC_gene_0945_tx_4 1 - 92475 94195 . 1 1721 0 -chrIII 92475 94365 HC_gene_0945_tx_5 20 - 92475 94365 . 1 1891 0 -chrIII 92475 94365 HC_gene_0945_tx_6 1 - 92475 94365 . 2 1506,282 0,1609 -chrIII 92621 93240 HC_gene_0945_tx_23 1 - 92621 93240 . 1 620 0 -chrIII 92624 93640 HC_gene_0945_tx_25 1 - 92624 93640 . 1 1017 0 -chrIII 92628 93640 HC_gene_0945_tx_26 1 - 92628 93640 . 1 1013 0 -chrIII 92628 94066 HC_gene_0945_tx_7 1 - 92628 94066 . 1 1439 0 -chrIII 92630 93640 HC_gene_0945_tx_27 1 - 92630 93640 . 1 1011 0 -chrIII 92631 94365 HC_gene_0945_tx_8 1 - 92631 94365 . 1 1735 0 -chrIII 92639 94365 HC_gene_0945_tx_9 1 - 92639 94365 . 1 1727 0 -chrIII 92640 93640 HC_gene_0945_tx_28 1 - 92640 93640 . 1 1001 0 -chrIII 92640 94365 HC_gene_0945_tx_10 1 - 92640 94365 . 1 1726 0 -chrIII 92642 94365 HC_gene_0945_tx_11 1 - 92642 94365 . 1 1724 0 -chrIII 92643 93640 HC_gene_0945_tx_29 1 - 92643 93640 . 1 998 0 -chrIII 92643 94066 HC_gene_0945_tx_12 1 - 92643 94066 . 1 1424 0 -chrIII 92644 93640 HC_gene_0945_tx_30 1 - 92644 93640 . 1 997 0 -chrIII 92649 94365 HC_gene_0945_tx_13 1 - 92649 94365 . 1 1717 0 -chrIII 92674 94365 HC_gene_0945_tx_14 1 - 92674 94365 . 1 1692 0 -chrIII 92695 94365 HC_gene_0945_tx_15 1 - 92695 94365 . 2 1077,474 0,1197 -chrIII 92696 94365 HC_gene_0945_tx_16 1 - 92696 94365 . 1 1670 0 -chrIII 92697 94195 HC_gene_0945_tx_17 1 - 92697 94195 . 2 756,62 0,1437 -chrIII 92697 94365 HC_gene_0945_tx_18 1 - 92697 94365 . 1 1669 0 -chrIII 92699 94365 HC_gene_0945_tx_19 1 - 92699 94365 . 1 1667 0 -chrIII 92705 94365 HC_gene_0945_tx_20 1 - 92705 94365 . 1 1661 0 -chrIII 92706 94365 HC_gene_0945_tx_21 2 - 92706 94365 . 1 1660 0 -chrIII 94479 95793 HC_gene_0946_tx_1 12 - 94479 95793 . 1 1315 0 -chrIII 94479 95793 HC_gene_0946_tx_2 1 - 94479 95793 . 2 430,837 0,478 -chrIII 98317 101135 LC_gene_0947_tx_1 1 - 98317 101135 . 1 2819 0 -chrIII 100884 101372 HC_gene_0816_tx_1 1 + 100884 101372 . 1 489 0 -chrIII 100884 101447 HC_gene_0816_tx_2 2 + 100884 101447 . 1 564 0 -chrIII 101160 101636 HC_gene_0948_tx_1 29 - 101160 101636 . 1 477 0 -chrIII 101160 101823 HC_gene_0948_tx_2 45 - 101160 101823 . 2 474,123 0,541 -chrIII 101160 101823 HC_gene_0948_tx_3 11 - 101160 101823 . 1 664 0 -chrIII 101160 101823 HC_gene_0948_tx_4 5 - 101160 101823 . 2 446,123 0,541 -chrIII 101160 101823 HC_gene_0948_tx_5 1 - 101160 101823 . 2 474,119 0,545 -chrIII 101160 101823 HC_gene_0948_tx_6 2 - 101160 101823 . 2 474,127 0,537 -chrIII 101160 101823 HC_gene_0948_tx_7 1 - 101160 101823 . 2 446,127 0,537 -chrIII 101160 101823 HC_gene_0948_tx_8 1 - 101160 101823 . 2 489,95 0,569 -chrIII 101633 102165 MC_gene_0817_tx_1 1 + 101633 102165 . 1 533 0 -chrIII 102068 102324 HC_gene_0949_tx_1 45 - 102068 102324 . 1 257 0 -chrIII 102068 102580 HC_gene_0949_tx_2 32 - 102068 102580 . 1 513 0 -chrIII 102068 102631 HC_gene_0949_tx_3 5 - 102068 102631 . 1 564 0 -chrIII 102068 102706 HC_gene_0949_tx_4 37 - 102068 102706 . 1 639 0 -chrIII 102068 102922 HC_gene_0949_tx_5 24 - 102068 102922 . 1 855 0 -chrIII 102068 103073 HC_gene_0949_tx_6 28 - 102068 103073 . 1 1006 0 -chrIII 102068 103360 HC_gene_0949_tx_7 1 - 102068 103360 . 2 470,741 0,552 -chrIII 102068 103403 HC_gene_0949_tx_8 161 - 102068 103403 . 1 1336 0 -chrIII 102068 103403 HC_gene_0949_tx_9 1 - 102068 103403 . 2 391,882 0,454 -chrIII 102068 103403 HC_gene_0949_tx_10 1 - 102068 103403 . 2 607,676 0,660 -chrIII 102068 103403 HC_gene_0949_tx_11 1 - 102068 103403 . 2 860,416 0,920 -chrIII 102068 104371 HC_gene_0949_tx_12 35 - 102068 104371 . 1 2304 0 -chrIII 102068 104371 HC_gene_0949_tx_13 1 - 102068 104371 . 2 1696,359 0,1945 -chrIII 102068 104371 HC_gene_0949_tx_14 1 - 102068 104371 . 2 1468,786 0,1518 -chrIII 103640 104725 MC_gene_0818_tx_1 1 + 103640 104725 . 1 1086 0 -chrIII 104471 105169 HC_gene_0950_tx_1 177 - 104471 105169 . 1 699 0 -chrIII 104471 105564 HC_gene_0950_tx_2 768 - 104471 105564 . 1 1094 0 -chrIII 105534 106830 HC_gene_0951_tx_1 3 - 105534 106830 . 1 1297 0 -chrIII 105536 106830 HC_gene_0951_tx_2 1 - 105536 106830 . 1 1295 0 -chrIII 105542 106830 HC_gene_0951_tx_3 4 - 105542 106830 . 1 1289 0 -chrIII 105548 106845 HC_gene_0951_tx_4 1 - 105548 106845 . 1 1298 0 -chrIII 105558 106830 HC_gene_0951_tx_5 1 - 105558 106830 . 1 1273 0 -chrIII 105562 106843 HC_gene_0951_tx_6 1 - 105562 106843 . 1 1282 0 -chrIII 105562 106845 HC_gene_0951_tx_7 1 - 105562 106845 . 1 1284 0 -chrIII 105566 106830 HC_gene_0951_tx_8 4 - 105566 106830 . 1 1265 0 -chrIII 105799 106195 LC_gene_0819_tx_1 1 + 105799 106195 . 1 397 0 -chrIII 106997 107525 HC_gene_0820_tx_1 13 + 106997 107525 . 3 37,81,238 0,114,291 -chrIII 106997 107525 HC_gene_0820_tx_2 48 + 106997 107525 . 1 529 0 -chrIII 106997 107525 HC_gene_0820_tx_3 411 + 106997 107525 . 2 195,238 0,291 -chrIII 106997 107525 HC_gene_0820_tx_4 9 + 106997 107525 . 2 199,238 0,291 -chrIII 106997 107525 HC_gene_0820_tx_5 2 + 106997 107525 . 2 195,221 0,308 -chrIII 107098 107525 HC_gene_0820_tx_6 34 + 107098 107525 . 2 94,238 0,190 -chrIII 107098 107525 HC_gene_0820_tx_7 3 + 107098 107525 . 1 428 0 -chrIII 107429 108843 MC_gene_0952_tx_1 1 - 107429 108843 . 1 1415 0 -chrIII 107694 108929 HC_gene_0821_tx_1 4 + 107694 108929 . 1 1236 0 -chrIII 108011 108929 HC_gene_0821_tx_2 48 + 108011 108929 . 1 919 0 -chrIII 108011 109125 HC_gene_0821_tx_3 1 + 108011 109125 . 1 1115 0 -chrIII 108364 108929 HC_gene_0821_tx_4 4 + 108364 108929 . 1 566 0 -chrIII 109026 111714 MC_gene_0822_tx_1 1 + 109026 111714 . 1 2689 0 -chrIII 109165 110794 MC_gene_0822_tx_3 1 + 109165 110794 . 1 1630 0 -chrIII 109342 111869 MC_gene_0822_tx_2 1 + 109342 111869 . 1 2528 0 -chrIII 109634 111586 MC_gene_0822_tx_4 1 + 109634 111586 . 1 1953 0 -chrIII 110540 111713 HC_gene_0953_tx_1 24 - 110540 111713 . 1 1174 0 -chrIII 110540 111713 HC_gene_0953_tx_2 23 - 110540 111713 . 2 1018,80 0,1094 -chrIII 110540 111713 HC_gene_0953_tx_3 1 - 110540 111713 . 2 1044,80 0,1094 -chrIII 110540 111713 HC_gene_0953_tx_4 3 - 110540 111713 . 2 1040,80 0,1094 -chrIII 110713 111713 HC_gene_0953_tx_5 3 - 110713 111713 . 1 1001 0 -chrIII 110713 111713 HC_gene_0953_tx_6 1 - 110713 111713 . 2 845,80 0,921 -chrIII 111889 112568 HC_gene_0823_tx_1 174 + 111889 112568 . 1 680 0 -chrIII 112057 112568 HC_gene_0823_tx_2 37 + 112057 112568 . 1 512 0 -chrIII 112203 112568 HC_gene_0823_tx_3 23 + 112203 112568 . 1 366 0 -chrIII 112262 112568 HC_gene_0823_tx_4 13 + 112262 112568 . 1 307 0 -chrIII 112512 112896 HC_gene_0954_tx_1 3 - 112512 112896 . 1 385 0 -chrIII 112643 112941 MC_gene_0824_tx_1 1 + 112643 112941 . 1 299 0 -chrIII 112816 114276 MC_gene_0825_tx_1 1 + 112816 114276 . 1 1461 0 -chrIII 113113 114207 HC_gene_0955_tx_1 1 - 113113 114207 . 1 1095 0 -chrIII 113206 114207 HC_gene_0955_tx_2 3 - 113206 114207 . 1 1002 0 -chrIII 114593 115306 MC_gene_0826_tx_1 1 + 114593 115306 . 1 714 0 -chrIII 114678 115239 MC_gene_0826_tx_2 1 + 114678 115239 . 1 562 0 -chrIII 115249 116191 HC_gene_0956_tx_1 2 - 115249 116191 . 1 943 0 -chrIII 115358 116191 HC_gene_0956_tx_2 2 - 115358 116191 . 1 834 0 -chrIII 115518 116191 HC_gene_0956_tx_3 5 - 115518 116191 . 1 674 0 -chrIII 116403 117061 HC_gene_0827_tx_1 1 + 116403 117061 . 1 659 0 -chrIII 116418 116837 HC_gene_0827_tx_2 1 + 116418 116837 . 1 420 0 -chrIII 116429 116841 HC_gene_0827_tx_3 1 + 116429 116841 . 1 413 0 -chrIII 116753 117088 HC_gene_0957_tx_1 2 - 116753 117088 . 1 336 0 -chrIII 116753 118404 HC_gene_0957_tx_2 1 - 116753 118404 . 1 1652 0 -chrIII 116825 117061 HC_gene_0827_tx_4 1 + 116825 117061 . 1 237 0 -chrIII 116825 117361 HC_gene_0827_tx_5 4 + 116825 117361 . 1 537 0 -chrIII 116934 118404 HC_gene_0957_tx_3 2 - 116934 118404 . 1 1471 0 -chrIII 117000 118404 HC_gene_0957_tx_4 2 - 117000 118404 . 1 1405 0 -chrIII 117150 118404 HC_gene_0957_tx_5 8 - 117150 118404 . 1 1255 0 -chrIII 117233 118404 HC_gene_0957_tx_6 2 - 117233 118404 . 1 1172 0 -chrIII 117237 118404 HC_gene_0957_tx_7 1 - 117237 118404 . 1 1168 0 -chrIII 117238 118404 HC_gene_0957_tx_8 1 - 117238 118404 . 1 1167 0 -chrIII 117239 118404 HC_gene_0957_tx_9 1 - 117239 118404 . 1 1166 0 -chrIII 117241 118404 HC_gene_0957_tx_10 1 - 117241 118404 . 1 1164 0 -chrIII 117245 118404 HC_gene_0957_tx_11 1 - 117245 118404 . 1 1160 0 -chrIII 117247 118404 HC_gene_0957_tx_12 1 - 117247 118404 . 1 1158 0 -chrIII 117251 118404 HC_gene_0957_tx_13 1 - 117251 118404 . 1 1154 0 -chrIII 117274 118404 HC_gene_0957_tx_14 1 - 117274 118404 . 1 1131 0 -chrIII 117283 118404 HC_gene_0957_tx_15 1 - 117283 118404 . 1 1122 0 -chrIII 117287 118404 HC_gene_0957_tx_16 1 - 117287 118404 . 1 1118 0 -chrIII 117295 117883 HC_gene_0957_tx_44 1 - 117295 117883 . 1 589 0 -chrIII 117295 118404 HC_gene_0957_tx_17 2 - 117295 118404 . 1 1110 0 -chrIII 117297 118283 HC_gene_0957_tx_18 1 - 117297 118283 . 1 987 0 -chrIII 117297 118404 HC_gene_0957_tx_19 3 - 117297 118404 . 1 1108 0 -chrIII 117300 117883 HC_gene_0957_tx_45 1 - 117300 117883 . 1 584 0 -chrIII 117300 118404 HC_gene_0957_tx_20 1 - 117300 118404 . 1 1105 0 -chrIII 117302 118404 HC_gene_0957_tx_21 1 - 117302 118404 . 1 1103 0 -chrIII 117304 117883 HC_gene_0957_tx_46 1 - 117304 117883 . 1 580 0 -chrIII 117304 118283 HC_gene_0957_tx_22 1 - 117304 118283 . 1 980 0 -chrIII 117304 118404 HC_gene_0957_tx_23 3 - 117304 118404 . 1 1101 0 -chrIII 117307 117883 HC_gene_0957_tx_47 1 - 117307 117883 . 1 577 0 -chrIII 117307 118404 HC_gene_0957_tx_24 1 - 117307 118404 . 1 1098 0 -chrIII 117309 118404 HC_gene_0957_tx_25 1 - 117309 118404 . 1 1096 0 -chrIII 117310 118404 HC_gene_0957_tx_26 1 - 117310 118404 . 1 1095 0 -chrIII 117311 118283 HC_gene_0957_tx_27 1 - 117311 118283 . 1 973 0 -chrIII 117311 118404 HC_gene_0957_tx_28 4 - 117311 118404 . 1 1094 0 -chrIII 117311 118404 HC_gene_0957_tx_29 1 - 117311 118404 . 2 817,197 0,897 -chrIII 117312 117883 HC_gene_0957_tx_48 4 - 117312 117883 . 1 572 0 -chrIII 117312 118404 HC_gene_0957_tx_30 8 - 117312 118404 . 1 1093 0 -chrIII 117313 118283 HC_gene_0957_tx_31 3 - 117313 118283 . 1 971 0 -chrIII 117313 118404 HC_gene_0957_tx_32 7 - 117313 118404 . 1 1092 0 -chrIII 117317 117883 HC_gene_0957_tx_49 1 - 117317 117883 . 1 567 0 -chrIII 117317 118404 HC_gene_0957_tx_33 2 - 117317 118404 . 1 1088 0 -chrIII 117318 118404 HC_gene_0957_tx_34 3 - 117318 118404 . 1 1087 0 -chrIII 117319 118404 HC_gene_0957_tx_35 2 - 117319 118404 . 1 1086 0 -chrIII 117320 118404 HC_gene_0957_tx_36 1 - 117320 118404 . 1 1085 0 -chrIII 117321 117883 HC_gene_0957_tx_50 4 - 117321 117883 . 1 563 0 -chrIII 117321 118404 HC_gene_0957_tx_37 2 - 117321 118404 . 1 1084 0 -chrIII 117322 118283 HC_gene_0957_tx_38 1 - 117322 118283 . 1 962 0 -chrIII 117322 118404 HC_gene_0957_tx_39 6 - 117322 118404 . 1 1083 0 -chrIII 117323 117883 HC_gene_0957_tx_51 1 - 117323 117883 . 1 561 0 -chrIII 117323 118283 HC_gene_0957_tx_40 1 - 117323 118283 . 1 961 0 -chrIII 117323 118404 HC_gene_0957_tx_41 3 - 117323 118404 . 1 1082 0 -chrIII 117324 117883 HC_gene_0957_tx_52 1 - 117324 117883 . 1 560 0 -chrIII 117324 117883 HC_gene_0957_tx_53 1 - 117324 117883 . 2 293,177 0,383 -chrIII 117324 118283 HC_gene_0957_tx_42 2 - 117324 118283 . 1 960 0 -chrIII 117324 118404 HC_gene_0957_tx_43 5 - 117324 118404 . 1 1081 0 -chrIII 118407 118951 MC_gene_0958_tx_1 1 - 118407 118951 . 1 545 0 -chrIII 118597 119259 HC_gene_0828_tx_1 106 + 118597 119259 . 1 663 0 -chrIII 118687 119259 HC_gene_0828_tx_2 6 + 118687 119259 . 1 573 0 -chrIII 118763 119259 HC_gene_0828_tx_3 10 + 118763 119259 . 1 497 0 -chrIII 118855 119259 HC_gene_0828_tx_4 13 + 118855 119259 . 1 405 0 -chrIII 119135 120504 HC_gene_0959_tx_1 5 - 119135 120504 . 1 1370 0 -chrIII 119417 119860 HC_gene_0959_tx_2 43 - 119417 119860 . 1 444 0 -chrIII 119417 120021 HC_gene_0959_tx_3 42 - 119417 120021 . 1 605 0 -chrIII 119417 120244 HC_gene_0959_tx_4 21 - 119417 120244 . 1 828 0 -chrIII 119417 120504 HC_gene_0959_tx_5 343 - 119417 120504 . 1 1088 0 -chrIII 120158 120471 MC_gene_0829_tx_1 1 + 120158 120471 . 1 314 0 -chrIII 120500 120988 MC_gene_0830_tx_1 1 + 120500 120988 . 1 489 0 -chrIII 120786 121433 MC_gene_0831_tx_1 1 + 120786 121433 . 1 648 0 -chrIII 120842 121470 HC_gene_0960_tx_1 16 - 120842 121470 . 1 629 0 -chrIII 120842 122110 HC_gene_0960_tx_2 16 - 120842 122110 . 1 1269 0 -chrIII 120842 122384 HC_gene_0960_tx_3 85 - 120842 122384 . 1 1543 0 -chrIII 120842 122384 HC_gene_0960_tx_4 1 - 120842 122384 . 2 613,818 0,725 -chrIII 120842 122384 HC_gene_0960_tx_5 1 - 120842 122384 . 2 670,811 0,732 -chrIII 120842 122384 HC_gene_0960_tx_6 1 - 120842 122384 . 2 952,477 0,1066 -chrIII 120842 122384 HC_gene_0960_tx_7 1 - 120842 122384 . 2 531,942 0,601 -chrIII 120842 122566 HC_gene_0960_tx_8 1 - 120842 122566 . 1 1725 0 -chrIII 120842 123450 HC_gene_0960_tx_9 1 - 120842 123450 . 1 2609 0 -chrIII 120897 121454 MC_gene_0831_tx_2 1 + 120897 121454 . 1 558 0 -chrIII 121197 121603 MC_gene_0832_tx_1 1 + 121197 121603 . 1 407 0 -chrIII 124081 124648 MC_gene_0833_tx_1 1 + 124081 124648 . 1 568 0 -chrIII 124567 124966 HC_gene_0961_tx_1 3 - 124567 124966 . 1 400 0 -chrIII 124567 124972 HC_gene_0961_tx_2 1 - 124567 124972 . 1 406 0 -chrIII 125214 125947 HC_gene_0834_tx_1 1 + 125214 125947 . 1 734 0 -chrIII 125214 126018 HC_gene_0834_tx_2 8 + 125214 126018 . 1 805 0 -chrIII 125288 126018 HC_gene_0834_tx_3 2 + 125288 126018 . 1 731 0 -chrIII 125357 126018 HC_gene_0834_tx_4 2 + 125357 126018 . 1 662 0 -chrIII 125564 127390 HC_gene_0962_tx_1 1 - 125564 127390 . 1 1827 0 -chrIII 125605 125947 HC_gene_0834_tx_5 4 + 125605 125947 . 1 343 0 -chrIII 125605 126018 HC_gene_0834_tx_6 21 + 125605 126018 . 1 414 0 -chrIII 125847 126366 HC_gene_0962_tx_3 10 - 125847 126366 . 1 520 0 -chrIII 125847 127390 HC_gene_0962_tx_2 1 - 125847 127390 . 1 1544 0 -chrIII 125929 126366 HC_gene_0962_tx_4 4 - 125929 126366 . 1 438 0 -chrIII 125929 126772 HC_gene_0962_tx_5 1 - 125929 126772 . 1 844 0 -chrIII 126542 126866 HC_gene_0835_tx_1 4 + 126542 126866 . 1 325 0 -chrIII 127155 127770 MC_gene_0836_tx_1 1 + 127155 127770 . 1 616 0 -chrIII 128048 130386 HC_gene_0837_tx_1 5 + 128048 130386 . 1 2339 0 -chrIII 128048 130545 HC_gene_0837_tx_2 32 + 128048 130545 . 1 2498 0 -chrIII 128048 130545 HC_gene_0837_tx_3 1 + 128048 130545 . 2 1625,772 0,1726 -chrIII 128174 130386 HC_gene_0837_tx_4 1 + 128174 130386 . 1 2213 0 -chrIII 128174 130386 HC_gene_0837_tx_5 1 + 128174 130386 . 2 237,1056 0,1157 -chrIII 128174 130545 HC_gene_0837_tx_6 3 + 128174 130545 . 1 2372 0 -chrIII 128584 130386 HC_gene_0837_tx_7 1 + 128584 130386 . 1 1803 0 -chrIII 128584 130545 HC_gene_0837_tx_8 5 + 128584 130545 . 1 1962 0 -chrIII 128696 130386 HC_gene_0837_tx_9 1 + 128696 130386 . 1 1691 0 -chrIII 128696 130545 HC_gene_0837_tx_10 7 + 128696 130545 . 1 1850 0 -chrIII 129776 130545 HC_gene_0837_tx_11 17 + 129776 130545 . 1 770 0 -chrIII 129929 130386 HC_gene_0837_tx_13 1 + 129929 130386 . 1 458 0 -chrIII 129929 130545 HC_gene_0837_tx_12 14 + 129929 130545 . 1 617 0 -chrIII 130059 131038 HC_gene_0963_tx_1 1 - 130059 131038 . 1 980 0 -chrIII 130059 131562 HC_gene_0963_tx_2 1 - 130059 131562 . 2 645,788 0,716 -chrIII 130059 131562 HC_gene_0963_tx_3 3 - 130059 131562 . 1 1504 0 -chrIII 130123 131562 HC_gene_0963_tx_4 3 - 130123 131562 . 1 1440 0 -chrIII 130312 131562 HC_gene_0963_tx_5 4 - 130312 131562 . 1 1251 0 -chrIII 130448 131038 HC_gene_0963_tx_16 10 - 130448 131038 . 1 591 0 -chrIII 130448 131562 HC_gene_0963_tx_6 64 - 130448 131562 . 1 1115 0 -chrIII 130524 131038 HC_gene_0963_tx_17 6 - 130524 131038 . 1 515 0 -chrIII 130524 131562 HC_gene_0963_tx_7 33 - 130524 131562 . 1 1039 0 -chrIII 130640 131562 HC_gene_0963_tx_8 1 - 130640 131562 . 1 923 0 -chrIII 130641 131562 HC_gene_0963_tx_9 10 - 130641 131562 . 1 922 0 -chrIII 130641 131907 HC_gene_0963_tx_18 1 - 130641 131907 . 1 1267 0 -chrIII 130642 131562 HC_gene_0963_tx_10 1 - 130642 131562 . 1 921 0 -chrIII 130645 131562 HC_gene_0963_tx_11 18 - 130645 131562 . 1 918 0 -chrIII 130646 131562 HC_gene_0963_tx_12 5 - 130646 131562 . 1 917 0 -chrIII 130647 131562 HC_gene_0963_tx_13 1 - 130647 131562 . 1 916 0 -chrIII 130648 131562 HC_gene_0963_tx_14 6 - 130648 131562 . 1 915 0 -chrIII 130650 131038 HC_gene_0963_tx_19 1 - 130650 131038 . 1 389 0 -chrIII 130650 131562 HC_gene_0963_tx_15 1 - 130650 131562 . 1 913 0 -chrIII 131869 132136 MC_gene_0838_tx_1 1 + 131869 132136 . 1 268 0 -chrIII 132140 133237 MC_gene_0964_tx_1 1 - 132140 133237 . 1 1098 0 -chrIII 132266 133722 HC_gene_0839_tx_1 2 + 132266 133722 . 1 1457 0 -chrIII 133665 134740 HC_gene_0965_tx_1 7 - 133665 134740 . 1 1076 0 -chrIII 133665 134924 HC_gene_0965_tx_2 3 - 133665 134924 . 1 1260 0 -chrIII 133665 134997 HC_gene_0965_tx_3 4 - 133665 134997 . 1 1333 0 -chrIII 133665 134997 HC_gene_0965_tx_4 1 - 133665 134997 . 2 325,755 0,578 -chrIII 133665 135130 HC_gene_0965_tx_5 1 - 133665 135130 . 1 1466 0 -chrIII 133665 135593 HC_gene_0965_tx_6 2 - 133665 135593 . 1 1929 0 -chrIII 133665 136139 HC_gene_0965_tx_7 3 - 133665 136139 . 1 2475 0 -chrIII 133665 136251 HC_gene_0965_tx_8 2 - 133665 136251 . 1 2587 0 -chrIII 133665 136500 HC_gene_0965_tx_9 1 - 133665 136500 . 2 1838,932 0,1904 -chrIII 133665 136978 HC_gene_0965_tx_10 1 - 133665 136978 . 2 2400,739 0,2575 -chrIII 133665 137002 HC_gene_0965_tx_11 10 - 133665 137002 . 1 3338 0 -chrIII 133665 137002 HC_gene_0965_tx_12 1 - 133665 137002 . 2 272,2901 0,437 -chrIII 133665 137002 HC_gene_0965_tx_13 1 - 133665 137002 . 2 2254,922 0,2416 -chrIII 134462 134924 HC_gene_0965_tx_14 1 - 134462 134924 . 1 463 0 -chrIII 134462 135130 HC_gene_0965_tx_15 1 - 134462 135130 . 1 669 0 -chrIII 134462 137002 HC_gene_0965_tx_16 1 - 134462 137002 . 1 2541 0 -chrIII 135061 136139 HC_gene_0965_tx_17 1 - 135061 136139 . 1 1079 0 -chrIII 135061 137002 HC_gene_0965_tx_18 2 - 135061 137002 . 1 1942 0 -chrIII 136391 136939 LC_gene_0840_tx_1 1 + 136391 136939 . 1 549 0 -chrIII 137561 138988 MC_gene_0966_tx_1 1 - 137561 138988 . 1 1428 0 -chrIII 137705 139179 HC_gene_0841_tx_1 3070 + 137705 139179 . 1 1475 0 -chrIII 137705 139179 HC_gene_0841_tx_2 2 + 137705 139179 . 2 1310,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_3 1 + 137705 139179 . 2 448,921 0,554 -chrIII 137705 139179 HC_gene_0841_tx_4 1 + 137705 139179 . 2 1086,320 0,1155 -chrIII 137705 139179 HC_gene_0841_tx_5 1 + 137705 139179 . 2 1328,92 0,1383 -chrIII 137705 139179 HC_gene_0841_tx_6 1 + 137705 139179 . 3 627,155,590 0,683,885 -chrIII 137705 139179 HC_gene_0841_tx_7 1 + 137705 139179 . 2 1273,123 0,1352 -chrIII 137705 139179 HC_gene_0841_tx_8 2 + 137705 139179 . 2 1314,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_9 1 + 137705 139179 . 2 1302,84 0,1391 -chrIII 137705 139179 HC_gene_0841_tx_10 1 + 137705 139179 . 2 1313,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_11 2 + 137705 139179 . 2 1289,87 0,1388 -chrIII 137705 139179 HC_gene_0841_tx_12 1 + 137705 139179 . 2 1263,110 0,1365 -chrIII 137705 139179 HC_gene_0841_tx_13 1 + 137705 139179 . 2 1316,80 0,1395 -chrIII 137705 139179 HC_gene_0841_tx_14 1 + 137705 139179 . 2 1311,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_15 2 + 137705 139179 . 2 1328,85 0,1390 -chrIII 137705 139179 HC_gene_0841_tx_16 1 + 137705 139179 . 2 1248,86 0,1389 -chrIII 137705 139179 HC_gene_0841_tx_17 1 + 137705 139179 . 2 1320,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_18 3 + 137705 139179 . 2 1273,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_19 1 + 137705 139179 . 2 1263,72 0,1403 -chrIII 137705 139179 HC_gene_0841_tx_20 1 + 137705 139179 . 2 1318,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_21 1 + 137705 139179 . 2 579,744 0,731 -chrIII 137705 139179 HC_gene_0841_tx_22 1 + 137705 139179 . 2 1322,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_23 1 + 137705 139179 . 2 1309,88 0,1387 -chrIII 137705 139179 HC_gene_0841_tx_24 1 + 137705 139179 . 2 1218,110 0,1365 -chrIII 137705 139179 HC_gene_0841_tx_25 1 + 137705 139179 . 2 1328,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_26 1 + 137705 139179 . 2 1302,91 0,1384 -chrIII 137705 139179 HC_gene_0841_tx_27 1 + 137705 139179 . 2 1289,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_28 3 + 137705 139179 . 2 1299,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_29 1 + 137705 139179 . 2 1248,127 0,1348 -chrIII 137705 139179 HC_gene_0841_tx_30 1 + 137705 139179 . 2 1333,92 0,1383 -chrIII 137705 139179 HC_gene_0841_tx_31 1 + 137705 139179 . 2 1284,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_32 1 + 137705 139179 . 2 1333,62 0,1413 -chrIII 137705 139179 HC_gene_0841_tx_33 1 + 137705 139179 . 2 1263,97 0,1378 -chrIII 137705 139179 HC_gene_0841_tx_34 1 + 137705 139179 . 2 1296,84 0,1391 -chrIII 137705 139179 HC_gene_0841_tx_35 1 + 137705 139179 . 2 1353,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_36 1 + 137705 139179 . 2 830,590 0,885 -chrIII 137705 139179 HC_gene_0841_tx_37 1 + 137705 139179 . 2 1319,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_38 1 + 137705 139179 . 2 1312,110 0,1365 -chrIII 137705 139179 HC_gene_0841_tx_39 1 + 137705 139179 . 2 1303,83 0,1392 -chrIII 137705 139179 HC_gene_0841_tx_40 1 + 137705 139179 . 2 74,1350 0,125 -chrIII 137705 139179 HC_gene_0841_tx_41 1 + 137705 139179 . 2 1288,97 0,1378 -chrIII 137705 139179 HC_gene_0841_tx_42 2 + 137705 139179 . 2 1269,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_43 1 + 137705 139179 . 2 1305,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_44 1 + 137705 139179 . 2 470,937 0,538 -chrIII 137705 139179 HC_gene_0841_tx_45 1 + 137705 139179 . 2 1328,95 0,1380 -chrIII 137705 139179 HC_gene_0841_tx_46 1 + 137705 139179 . 2 1333,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_47 1 + 137705 139179 . 2 864,515 0,960 -chrIII 137705 139179 HC_gene_0841_tx_48 1 + 137705 139179 . 2 1309,97 0,1378 -chrIII 137705 139179 HC_gene_0841_tx_49 1 + 137705 139179 . 2 1263,128 0,1347 -chrIII 137705 139179 HC_gene_0841_tx_50 1 + 137705 139179 . 2 246,1176 0,299 -chrIII 137705 139179 HC_gene_0841_tx_51 1 + 137705 139179 . 2 1283,74 0,1401 -chrIII 137705 139179 HC_gene_0841_tx_52 1 + 137705 139179 . 2 843,590 0,885 -chrIII 137705 139179 HC_gene_0841_tx_53 1 + 137705 139179 . 2 783,422 0,1053 -chrIII 137705 139179 HC_gene_0841_tx_54 1 + 137705 139179 . 2 1304,90 0,1385 -chrIII 137705 139179 HC_gene_0841_tx_55 1 + 137705 139179 . 2 1305,110 0,1365 -chrIII 137705 139179 HC_gene_0841_tx_56 1 + 137705 139179 . 2 132,1222 0,253 -chrIII 137705 139179 HC_gene_0841_tx_57 1 + 137705 139179 . 2 405,1017 0,458 -chrIII 139062 140420 MC_gene_0967_tx_1 1 - 139062 140420 . 1 1359 0 -chrIII 139396 140190 LC_gene_0842_tx_1 1 + 139396 140190 . 1 795 0 -chrIII 141050 142195 HC_gene_0968_tx_1 2 - 141050 142195 . 1 1146 0 -chrIII 141136 142195 HC_gene_0968_tx_2 1 - 141136 142195 . 1 1060 0 -chrIII 141136 142546 HC_gene_0969_tx_1 1 - 141136 142546 . 1 1411 0 -chrIII 141609 142546 HC_gene_0969_tx_2 1 - 141609 142546 . 1 938 0 -chrIII 142256 142511 HC_gene_0969_tx_3 1 - 142256 142511 . 1 256 0 -chrIII 142256 142513 HC_gene_0969_tx_4 3 - 142256 142513 . 1 258 0 -chrIII 142256 142521 HC_gene_0969_tx_5 1 - 142256 142521 . 1 266 0 -chrIII 142256 142525 HC_gene_0969_tx_6 2 - 142256 142525 . 1 270 0 -chrIII 142256 142527 HC_gene_0969_tx_7 1 - 142256 142527 . 1 272 0 -chrIII 142256 142528 HC_gene_0969_tx_8 2 - 142256 142528 . 1 273 0 -chrIII 142256 142529 HC_gene_0969_tx_9 3 - 142256 142529 . 1 274 0 -chrIII 142256 142530 HC_gene_0969_tx_10 2 - 142256 142530 . 1 275 0 -chrIII 142256 142531 HC_gene_0969_tx_11 4 - 142256 142531 . 1 276 0 -chrIII 142256 142532 HC_gene_0969_tx_12 3 - 142256 142532 . 1 277 0 -chrIII 142256 142539 HC_gene_0969_tx_13 1 - 142256 142539 . 1 284 0 -chrIII 142256 142546 HC_gene_0969_tx_14 194 - 142256 142546 . 1 291 0 -chrIII 143381 143673 MC_gene_0970_tx_1 1 - 143381 143673 . 1 293 0 -chrIII 143607 144698 HC_gene_0843_tx_1 99 + 143607 144698 . 1 1092 0 -chrIII 144027 144698 HC_gene_0843_tx_2 20 + 144027 144698 . 1 672 0 -chrIII 144177 144698 HC_gene_0843_tx_3 26 + 144177 144698 . 1 522 0 -chrIII 144291 144698 HC_gene_0843_tx_4 28 + 144291 144698 . 1 408 0 -chrIII 144570 145015 HC_gene_0971_tx_1 18 - 144570 145015 . 1 446 0 -chrIII 144570 147664 HC_gene_0971_tx_3 36 - 144570 147664 . 1 3095 0 -chrIII 144570 147664 HC_gene_0971_tx_4 1 - 144570 147664 . 2 286,1306 0,1789 -chrIII 144570 147664 HC_gene_0971_tx_5 1 - 144570 147664 . 2 862,1131 0,1964 -chrIII 144570 147664 HC_gene_0971_tx_6 1 - 144570 147664 . 2 950,1165 0,1930 -chrIII 144637 145015 HC_gene_0971_tx_2 3 - 144637 145015 . 1 379 0 -chrIII 144637 147664 HC_gene_0971_tx_7 12 - 144637 147664 . 1 3028 0 -chrIII 147723 148593 HC_gene_0972_tx_1 1 - 147723 148593 . 1 871 0 -chrIII 147751 148593 HC_gene_0972_tx_2 1 - 147751 148593 . 1 843 0 -chrIII 147753 148593 HC_gene_0972_tx_3 1 - 147753 148593 . 1 841 0 -chrIII 147756 148593 HC_gene_0972_tx_4 2 - 147756 148593 . 1 838 0 -chrIII 147759 148593 HC_gene_0972_tx_5 1 - 147759 148593 . 1 835 0 -chrIII 147760 148593 HC_gene_0972_tx_6 1 - 147760 148593 . 1 834 0 -chrIII 147765 148593 HC_gene_0972_tx_7 1 - 147765 148593 . 1 829 0 -chrIII 147770 148593 HC_gene_0972_tx_8 1 - 147770 148593 . 1 824 0 -chrIII 147802 148593 HC_gene_0972_tx_9 1 - 147802 148593 . 1 792 0 -chrIII 147803 148593 HC_gene_0972_tx_10 1 - 147803 148593 . 1 791 0 -chrIII 147811 148593 HC_gene_0972_tx_11 1 - 147811 148593 . 1 783 0 -chrIII 147845 148593 HC_gene_0972_tx_12 1 - 147845 148593 . 1 749 0 -chrIII 147873 148593 HC_gene_0972_tx_13 1 - 147873 148593 . 1 721 0 -chrIII 147874 149767 MC_gene_0844_tx_1 1 + 147874 149767 . 2 786,223 0,1671 -chrIII 147884 148593 HC_gene_0972_tx_14 1 - 147884 148593 . 1 710 0 -chrIII 147894 148593 HC_gene_0972_tx_15 1 - 147894 148593 . 1 700 0 -chrIII 147896 148593 HC_gene_0972_tx_16 1 - 147896 148593 . 1 698 0 -chrIII 147900 148593 HC_gene_0972_tx_17 1 - 147900 148593 . 1 694 0 -chrIII 147917 148593 HC_gene_0972_tx_18 2 - 147917 148593 . 1 677 0 -chrIII 147919 148593 HC_gene_0972_tx_19 1 - 147919 148593 . 1 675 0 -chrIII 147927 148593 HC_gene_0972_tx_20 1 - 147927 148593 . 1 667 0 -chrIII 147928 148593 HC_gene_0972_tx_21 1 - 147928 148593 . 1 666 0 -chrIII 147941 148593 HC_gene_0972_tx_22 1 - 147941 148593 . 1 653 0 -chrIII 147955 148593 HC_gene_0972_tx_23 1 - 147955 148593 . 1 639 0 -chrIII 147956 148593 HC_gene_0972_tx_24 1 - 147956 148593 . 1 638 0 -chrIII 147959 148593 HC_gene_0972_tx_25 1 - 147959 148593 . 1 635 0 -chrIII 147960 148593 HC_gene_0972_tx_26 1 - 147960 148593 . 1 634 0 -chrIII 147961 148593 HC_gene_0972_tx_27 1 - 147961 148593 . 1 633 0 -chrIII 147971 148593 HC_gene_0972_tx_28 1 - 147971 148593 . 1 623 0 -chrIII 147973 148593 HC_gene_0972_tx_29 1 - 147973 148593 . 1 621 0 -chrIII 147981 148593 HC_gene_0972_tx_30 1 - 147981 148593 . 1 613 0 -chrIII 147985 148593 HC_gene_0972_tx_31 1 - 147985 148593 . 1 609 0 -chrIII 147989 148593 HC_gene_0972_tx_32 1 - 147989 148593 . 1 605 0 -chrIII 147991 148197 MC_gene_0844_tx_2 1 + 147991 148197 . 1 207 0 -chrIII 148004 148593 HC_gene_0972_tx_33 4 - 148004 148593 . 1 590 0 -chrIII 148014 148593 HC_gene_0972_tx_34 1 - 148014 148593 . 1 580 0 -chrIII 148022 148593 HC_gene_0972_tx_35 1 - 148022 148593 . 1 572 0 -chrIII 148034 148593 HC_gene_0972_tx_36 1 - 148034 148593 . 1 560 0 -chrIII 148042 148593 HC_gene_0972_tx_37 1 - 148042 148593 . 1 552 0 -chrIII 148046 148593 HC_gene_0972_tx_38 5 - 148046 148593 . 1 548 0 -chrIII 148048 148593 HC_gene_0972_tx_39 2 - 148048 148593 . 1 546 0 -chrIII 148049 148593 HC_gene_0972_tx_40 1 - 148049 148593 . 1 545 0 -chrIII 148052 148593 HC_gene_0972_tx_41 1 - 148052 148593 . 1 542 0 -chrIII 148054 148593 HC_gene_0972_tx_42 1 - 148054 148593 . 1 540 0 -chrIII 148055 148593 HC_gene_0972_tx_43 1 - 148055 148593 . 1 539 0 -chrIII 148056 148593 HC_gene_0972_tx_44 1 - 148056 148593 . 1 538 0 -chrIII 148065 148593 HC_gene_0972_tx_45 4 - 148065 148593 . 1 529 0 -chrIII 148069 148593 HC_gene_0972_tx_46 1 - 148069 148593 . 1 525 0 -chrIII 148072 148593 HC_gene_0972_tx_47 1 - 148072 148593 . 1 522 0 -chrIII 148073 148593 HC_gene_0972_tx_48 1 - 148073 148593 . 1 521 0 -chrIII 148078 148593 HC_gene_0972_tx_49 1 - 148078 148593 . 1 516 0 -chrIII 148080 148593 HC_gene_0972_tx_50 1 - 148080 148593 . 1 514 0 -chrIII 148082 148593 HC_gene_0972_tx_51 1 - 148082 148593 . 1 512 0 -chrIII 148083 148593 HC_gene_0972_tx_52 1 - 148083 148593 . 1 511 0 -chrIII 148085 148593 HC_gene_0972_tx_53 1 - 148085 148593 . 1 509 0 -chrIII 148087 148593 HC_gene_0972_tx_54 2 - 148087 148593 . 1 507 0 -chrIII 148089 148593 HC_gene_0972_tx_55 1 - 148089 148593 . 1 505 0 -chrIII 148090 148593 HC_gene_0972_tx_56 2 - 148090 148593 . 1 504 0 -chrIII 148092 148593 HC_gene_0972_tx_57 2 - 148092 148593 . 1 502 0 -chrIII 148094 148593 HC_gene_0972_tx_58 1 - 148094 148593 . 1 500 0 -chrIII 148096 148593 HC_gene_0972_tx_59 2 - 148096 148593 . 1 498 0 -chrIII 148097 148593 HC_gene_0972_tx_60 1 - 148097 148593 . 1 497 0 -chrIII 148106 148593 HC_gene_0972_tx_61 2 - 148106 148593 . 1 488 0 -chrIII 148109 148593 HC_gene_0972_tx_62 1 - 148109 148593 . 1 485 0 -chrIII 148118 148593 HC_gene_0972_tx_63 1 - 148118 148593 . 1 476 0 -chrIII 148141 148593 HC_gene_0972_tx_64 1 - 148141 148593 . 1 453 0 -chrIII 148148 148593 HC_gene_0972_tx_65 1 - 148148 148593 . 1 446 0 -chrIII 149666 152016 MC_gene_0973_tx_1 1 - 149666 152016 . 2 155,348 0,2003 -chrIII 151996 152436 HC_gene_0845_tx_1 1 + 151996 152436 . 1 441 0 -chrIII 152202 152582 HC_gene_0974_tx_1 1 - 152202 152582 . 1 381 0 -chrIII 152721 153936 HC_gene_0846_tx_1 6 + 152721 153936 . 1 1216 0 -chrIII 152721 154044 HC_gene_0846_tx_2 16 + 152721 154044 . 1 1324 0 -chrIII 152721 154044 HC_gene_0846_tx_3 1 + 152721 154044 . 2 1118,71 0,1253 -chrIII 152874 153936 HC_gene_0846_tx_4 1 + 152874 153936 . 2 373,578 0,485 -chrIII 152874 154044 HC_gene_0846_tx_5 3 + 152874 154044 . 1 1171 0 -chrIII 153934 154279 HC_gene_0975_tx_1 9 - 153934 154279 . 1 346 0 -chrIII 153934 154363 HC_gene_0975_tx_2 6 - 153934 154363 . 1 430 0 -chrIII 153934 154671 HC_gene_0975_tx_3 10 - 153934 154671 . 1 738 0 -chrIII 153934 155115 HC_gene_0975_tx_4 6 - 153934 155115 . 1 1182 0 -chrIII 154320 154792 MC_gene_0847_tx_1 1 + 154320 154792 . 1 473 0 -chrIII 154404 154671 HC_gene_0975_tx_5 1 - 154404 154671 . 1 268 0 -chrIII 154438 155115 HC_gene_0976_tx_1 1 - 154438 155115 . 1 678 0 -chrIII 154441 155115 HC_gene_0976_tx_2 1 - 154441 155115 . 1 675 0 -chrIII 154450 155115 HC_gene_0976_tx_3 1 - 154450 155115 . 1 666 0 -chrIII 154479 155115 HC_gene_0976_tx_4 1 - 154479 155115 . 1 637 0 -chrIII 154507 155115 HC_gene_0976_tx_5 1 - 154507 155115 . 1 609 0 -chrIII 154509 155115 HC_gene_0976_tx_6 1 - 154509 155115 . 1 607 0 -chrIII 154610 155115 HC_gene_0976_tx_7 1 - 154610 155115 . 1 506 0 -chrIII 154628 155115 HC_gene_0976_tx_8 1 - 154628 155115 . 1 488 0 -chrIII 154638 155115 HC_gene_0976_tx_9 1 - 154638 155115 . 1 478 0 -chrIII 154657 154984 HC_gene_0976_tx_10 1 - 154657 154984 . 1 328 0 -chrIII 154658 155102 HC_gene_0976_tx_11 1 - 154658 155102 . 1 445 0 -chrIII 154662 154991 HC_gene_0976_tx_12 1 - 154662 154991 . 1 330 0 -chrIII 154662 155084 HC_gene_0976_tx_13 1 - 154662 155084 . 1 423 0 -chrIII 154662 155086 HC_gene_0976_tx_14 1 - 154662 155086 . 1 425 0 -chrIII 154662 155091 HC_gene_0976_tx_15 1 - 154662 155091 . 1 430 0 -chrIII 154662 155092 HC_gene_0976_tx_16 2 - 154662 155092 . 1 431 0 -chrIII 154662 155101 HC_gene_0976_tx_17 1 - 154662 155101 . 1 440 0 -chrIII 154662 155102 HC_gene_0976_tx_18 1 - 154662 155102 . 1 441 0 -chrIII 154665 154969 HC_gene_0976_tx_19 1 - 154665 154969 . 1 305 0 -chrIII 154665 155025 HC_gene_0976_tx_20 1 - 154665 155025 . 1 361 0 -chrIII 154665 155029 HC_gene_0976_tx_21 1 - 154665 155029 . 1 365 0 -chrIII 154665 155040 HC_gene_0976_tx_22 1 - 154665 155040 . 1 376 0 -chrIII 154665 155063 HC_gene_0976_tx_23 1 - 154665 155063 . 1 399 0 -chrIII 154665 155081 HC_gene_0976_tx_24 1 - 154665 155081 . 1 417 0 -chrIII 154665 155083 HC_gene_0976_tx_25 1 - 154665 155083 . 1 419 0 -chrIII 154665 155084 HC_gene_0976_tx_26 3 - 154665 155084 . 1 420 0 -chrIII 154665 155085 HC_gene_0976_tx_27 1 - 154665 155085 . 1 421 0 -chrIII 154665 155088 HC_gene_0976_tx_28 1 - 154665 155088 . 1 424 0 -chrIII 154665 155091 HC_gene_0976_tx_29 2 - 154665 155091 . 1 427 0 -chrIII 154665 155092 HC_gene_0976_tx_30 4 - 154665 155092 . 1 428 0 -chrIII 154665 155093 HC_gene_0976_tx_31 2 - 154665 155093 . 1 429 0 -chrIII 154665 155095 HC_gene_0976_tx_32 2 - 154665 155095 . 1 431 0 -chrIII 154665 155097 HC_gene_0976_tx_33 1 - 154665 155097 . 1 433 0 -chrIII 154665 155098 HC_gene_0976_tx_34 1 - 154665 155098 . 1 434 0 -chrIII 154665 155100 HC_gene_0976_tx_35 1 - 154665 155100 . 1 436 0 -chrIII 154665 155101 HC_gene_0976_tx_36 1 - 154665 155101 . 1 437 0 -chrIII 154665 155103 HC_gene_0976_tx_37 1 - 154665 155103 . 1 439 0 -chrIII 154665 155107 HC_gene_0976_tx_38 1 - 154665 155107 . 1 443 0 -chrIII 154665 155133 HC_gene_0976_tx_39 1 - 154665 155133 . 1 469 0 -chrIII 154667 155092 HC_gene_0976_tx_40 1 - 154667 155092 . 1 426 0 -chrIII 154667 155103 HC_gene_0976_tx_41 1 - 154667 155103 . 1 437 0 -chrIII 154669 155080 HC_gene_0976_tx_42 1 - 154669 155080 . 1 412 0 -chrIII 154669 155102 HC_gene_0976_tx_43 1 - 154669 155102 . 1 434 0 -chrIII 154670 155040 HC_gene_0976_tx_44 1 - 154670 155040 . 1 371 0 -chrIII 154671 155086 HC_gene_0976_tx_45 1 - 154671 155086 . 1 416 0 -chrIII 154671 155092 HC_gene_0976_tx_46 1 - 154671 155092 . 1 422 0 -chrIII 154671 155093 HC_gene_0976_tx_47 1 - 154671 155093 . 1 423 0 -chrIII 154672 155115 HC_gene_0976_tx_48 4 - 154672 155115 . 1 444 0 -chrIII 154673 155115 HC_gene_0976_tx_49 2 - 154673 155115 . 1 443 0 -chrIII 154674 155115 HC_gene_0976_tx_50 2 - 154674 155115 . 1 442 0 -chrIII 154675 155115 HC_gene_0976_tx_51 5 - 154675 155115 . 1 441 0 -chrIII 154676 155115 HC_gene_0976_tx_52 7 - 154676 155115 . 1 440 0 -chrIII 154677 155115 HC_gene_0976_tx_53 8 - 154677 155115 . 1 439 0 -chrIII 154678 155115 HC_gene_0976_tx_54 5 - 154678 155115 . 1 438 0 -chrIII 154733 155115 HC_gene_0976_tx_55 9 - 154733 155115 . 1 383 0 -chrIII 155288 156068 HC_gene_0848_tx_1 76 + 155288 156068 . 1 781 0 -chrIII 155926 156154 HC_gene_0977_tx_1 3 - 155926 156154 . 1 229 0 -chrIII 155926 156393 HC_gene_0977_tx_2 6 - 155926 156393 . 1 468 0 -chrIII 155926 156555 HC_gene_0977_tx_3 1 - 155926 156555 . 1 630 0 -chrIII 155926 157060 HC_gene_0977_tx_4 3 - 155926 157060 . 1 1135 0 -chrIII 155926 157208 HC_gene_0977_tx_5 5 - 155926 157208 . 1 1283 0 -chrIII 156073 157201 MC_gene_0849_tx_1 1 + 156073 157201 . 1 1129 0 -chrIII 156334 157300 MC_gene_0850_tx_1 1 + 156334 157300 . 1 967 0 -chrIII 157721 158377 HC_gene_0851_tx_1 3 + 157721 158377 . 1 657 0 -chrIII 157863 158377 HC_gene_0851_tx_2 18 + 157863 158377 . 1 515 0 -chrIII 158052 158377 HC_gene_0851_tx_3 10 + 158052 158377 . 1 326 0 -chrIII 158295 158779 HC_gene_0978_tx_1 13 - 158295 158779 . 1 485 0 -chrIII 158295 160428 HC_gene_0978_tx_2 17 - 158295 160428 . 1 2134 0 -chrIII 158295 160428 HC_gene_0978_tx_3 1 - 158295 160428 . 2 805,1259 0,875 -chrIII 158295 160428 HC_gene_0978_tx_4 1 - 158295 160428 . 2 1265,278 0,1856 -chrIII 158584 159311 HC_gene_0852_tx_1 1 + 158584 159311 . 1 728 0 -chrIII 158641 159036 HC_gene_0852_tx_3 1 + 158641 159036 . 1 396 0 -chrIII 158641 159311 HC_gene_0852_tx_2 1 + 158641 159311 . 1 671 0 -chrIII 158860 159137 HC_gene_0978_tx_5 1 - 158860 159137 . 1 278 0 -chrIII 160606 162242 HC_gene_0979_tx_1 8 - 160606 162242 . 1 1637 0 -chrIII 160694 162335 MC_gene_0853_tx_1 1 + 160694 162335 . 1 1642 0 -chrIII 162324 163219 HC_gene_0980_tx_1 2 - 162324 163219 . 1 896 0 -chrIII 162325 163219 HC_gene_0980_tx_2 5 - 162325 163219 . 1 895 0 -chrIII 162326 163219 HC_gene_0980_tx_3 1 - 162326 163219 . 1 894 0 -chrIII 162327 163219 HC_gene_0980_tx_4 1 - 162327 163219 . 1 893 0 -chrIII 162334 162725 HC_gene_0980_tx_112 1 - 162334 162725 . 1 392 0 -chrIII 162334 163219 HC_gene_0980_tx_5 2 - 162334 163219 . 1 886 0 -chrIII 162353 163219 HC_gene_0980_tx_6 1 - 162353 163219 . 1 867 0 -chrIII 162363 163219 HC_gene_0980_tx_7 1 - 162363 163219 . 1 857 0 -chrIII 162364 162725 HC_gene_0980_tx_113 1 - 162364 162725 . 1 362 0 -chrIII 162372 162851 HC_gene_0980_tx_167 1 - 162372 162851 . 1 480 0 -chrIII 162374 163219 HC_gene_0980_tx_8 1 - 162374 163219 . 1 846 0 -chrIII 162375 162725 HC_gene_0980_tx_114 1 - 162375 162725 . 1 351 0 -chrIII 162376 162725 HC_gene_0980_tx_115 1 - 162376 162725 . 1 350 0 -chrIII 162381 162937 HC_gene_0980_tx_168 1 - 162381 162937 . 1 557 0 -chrIII 162388 163219 HC_gene_0980_tx_9 1 - 162388 163219 . 1 832 0 -chrIII 162392 163025 HC_gene_0980_tx_169 1 - 162392 163025 . 1 634 0 -chrIII 162393 163219 HC_gene_0980_tx_10 1 - 162393 163219 . 1 827 0 -chrIII 162397 162725 HC_gene_0980_tx_116 1 - 162397 162725 . 1 329 0 -chrIII 162397 162937 HC_gene_0980_tx_170 1 - 162397 162937 . 1 541 0 -chrIII 162397 163219 HC_gene_0980_tx_11 2 - 162397 163219 . 1 823 0 -chrIII 162398 162937 HC_gene_0980_tx_171 1 - 162398 162937 . 1 540 0 -chrIII 162399 163219 HC_gene_0980_tx_12 1 - 162399 163219 . 1 821 0 -chrIII 162400 163219 HC_gene_0980_tx_13 2 - 162400 163219 . 1 820 0 -chrIII 162402 162725 HC_gene_0980_tx_117 1 - 162402 162725 . 1 324 0 -chrIII 162402 162937 HC_gene_0980_tx_172 1 - 162402 162937 . 1 536 0 -chrIII 162402 163219 HC_gene_0980_tx_14 7 - 162402 163219 . 1 818 0 -chrIII 162403 162725 HC_gene_0980_tx_118 16 - 162403 162725 . 1 323 0 -chrIII 162403 162851 HC_gene_0980_tx_173 6 - 162403 162851 . 1 449 0 -chrIII 162403 162937 HC_gene_0980_tx_174 16 - 162403 162937 . 1 535 0 -chrIII 162403 163025 HC_gene_0980_tx_175 8 - 162403 163025 . 1 623 0 -chrIII 162403 163219 HC_gene_0980_tx_15 130 - 162403 163219 . 1 817 0 -chrIII 162404 162725 HC_gene_0980_tx_119 12 - 162404 162725 . 1 322 0 -chrIII 162404 162937 HC_gene_0980_tx_176 10 - 162404 162937 . 1 534 0 -chrIII 162404 163025 HC_gene_0980_tx_177 8 - 162404 163025 . 1 622 0 -chrIII 162404 163219 HC_gene_0980_tx_16 76 - 162404 163219 . 1 816 0 -chrIII 162405 162725 HC_gene_0980_tx_120 1 - 162405 162725 . 1 321 0 -chrIII 162405 162851 HC_gene_0980_tx_178 1 - 162405 162851 . 1 447 0 -chrIII 162405 163025 HC_gene_0980_tx_179 3 - 162405 163025 . 1 621 0 -chrIII 162405 163219 HC_gene_0980_tx_17 22 - 162405 163219 . 1 815 0 -chrIII 162405 163219 HC_gene_0980_tx_18 1 - 162405 163219 . 2 182,581 0,234 -chrIII 162406 162725 HC_gene_0980_tx_121 17 - 162406 162725 . 1 320 0 -chrIII 162406 162851 HC_gene_0980_tx_180 4 - 162406 162851 . 1 446 0 -chrIII 162406 162937 HC_gene_0980_tx_181 7 - 162406 162937 . 1 532 0 -chrIII 162406 163025 HC_gene_0980_tx_182 15 - 162406 163025 . 1 620 0 -chrIII 162406 163219 HC_gene_0980_tx_19 109 - 162406 163219 . 1 814 0 -chrIII 162406 163219 HC_gene_0980_tx_20 1 - 162406 163219 . 2 169,576 0,238 -chrIII 162407 162937 HC_gene_0980_tx_183 1 - 162407 162937 . 1 531 0 -chrIII 162407 163219 HC_gene_0980_tx_21 4 - 162407 163219 . 1 813 0 -chrIII 162408 162725 HC_gene_0980_tx_122 37 - 162408 162725 . 1 318 0 -chrIII 162408 162851 HC_gene_0980_tx_184 20 - 162408 162851 . 1 444 0 -chrIII 162408 162937 HC_gene_0980_tx_185 66 - 162408 162937 . 1 530 0 -chrIII 162408 163025 HC_gene_0980_tx_186 31 - 162408 163025 . 1 618 0 -chrIII 162408 163219 HC_gene_0980_tx_22 429 - 162408 163219 . 1 812 0 -chrIII 162408 163219 HC_gene_0980_tx_23 1 - 162408 163219 . 2 439,332 0,480 -chrIII 162408 163219 HC_gene_0980_tx_24 1 - 162408 163219 . 2 650,94 0,718 -chrIII 162408 163219 HC_gene_0980_tx_25 1 - 162408 163219 . 2 560,143 0,669 -chrIII 162409 162725 HC_gene_0980_tx_123 2 - 162409 162725 . 1 317 0 -chrIII 162409 162851 HC_gene_0980_tx_187 1 - 162409 162851 . 1 443 0 -chrIII 162409 162937 HC_gene_0980_tx_188 2 - 162409 162937 . 1 529 0 -chrIII 162409 163025 HC_gene_0980_tx_189 2 - 162409 163025 . 1 617 0 -chrIII 162409 163219 HC_gene_0980_tx_26 23 - 162409 163219 . 1 811 0 -chrIII 162409 163219 HC_gene_0980_tx_27 1 - 162409 163219 . 2 532,183 0,628 -chrIII 162410 162725 HC_gene_0980_tx_124 4 - 162410 162725 . 1 316 0 -chrIII 162410 162851 HC_gene_0980_tx_190 1 - 162410 162851 . 1 442 0 -chrIII 162410 162937 HC_gene_0980_tx_191 3 - 162410 162937 . 1 528 0 -chrIII 162410 163025 HC_gene_0980_tx_192 3 - 162410 163025 . 1 616 0 -chrIII 162410 163219 HC_gene_0980_tx_28 39 - 162410 163219 . 1 810 0 -chrIII 162411 162725 HC_gene_0980_tx_125 5 - 162411 162725 . 1 315 0 -chrIII 162411 162851 HC_gene_0980_tx_193 1 - 162411 162851 . 1 441 0 -chrIII 162411 162937 HC_gene_0980_tx_194 3 - 162411 162937 . 1 527 0 -chrIII 162411 163219 HC_gene_0980_tx_29 36 - 162411 163219 . 1 809 0 -chrIII 162412 162725 HC_gene_0980_tx_126 21 - 162412 162725 . 1 314 0 -chrIII 162412 162851 HC_gene_0980_tx_195 17 - 162412 162851 . 1 440 0 -chrIII 162412 162937 HC_gene_0980_tx_196 37 - 162412 162937 . 1 526 0 -chrIII 162412 163025 HC_gene_0980_tx_197 12 - 162412 163025 . 1 614 0 -chrIII 162412 163219 HC_gene_0980_tx_30 295 - 162412 163219 . 1 808 0 -chrIII 162412 163219 HC_gene_0980_tx_31 1 - 162412 163219 . 2 400,352 0,456 -chrIII 162412 163219 HC_gene_0980_tx_32 1 - 162412 163219 . 2 44,677 0,131 -chrIII 162412 163219 HC_gene_0980_tx_33 1 - 162412 163219 . 2 672,35 0,773 -chrIII 162413 162725 HC_gene_0980_tx_127 16 - 162413 162725 . 1 313 0 -chrIII 162413 162851 HC_gene_0980_tx_198 2 - 162413 162851 . 1 439 0 -chrIII 162413 162937 HC_gene_0980_tx_199 16 - 162413 162937 . 1 525 0 -chrIII 162413 163025 HC_gene_0980_tx_200 6 - 162413 163025 . 1 613 0 -chrIII 162413 163219 HC_gene_0980_tx_34 82 - 162413 163219 . 1 807 0 -chrIII 162413 163219 HC_gene_0980_tx_35 1 - 162413 163219 . 2 43,675 0,132 -chrIII 162414 162725 HC_gene_0980_tx_128 32 - 162414 162725 . 1 312 0 -chrIII 162414 162851 HC_gene_0980_tx_201 16 - 162414 162851 . 1 438 0 -chrIII 162414 162937 HC_gene_0980_tx_202 37 - 162414 162937 . 1 524 0 -chrIII 162414 163025 HC_gene_0980_tx_203 14 - 162414 163025 . 1 612 0 -chrIII 162414 163219 HC_gene_0980_tx_36 177 - 162414 163219 . 1 806 0 -chrIII 162414 163219 HC_gene_0980_tx_37 1 - 162414 163219 . 2 87,581 0,225 -chrIII 162414 163219 HC_gene_0980_tx_38 1 - 162414 163219 . 2 644,94 0,712 -chrIII 162414 163219 HC_gene_0980_tx_39 1 - 162414 163219 . 2 644,103 0,703 -chrIII 162415 162725 HC_gene_0980_tx_129 54 - 162415 162725 . 1 311 0 -chrIII 162415 162851 HC_gene_0980_tx_204 27 - 162415 162851 . 1 437 0 -chrIII 162415 162937 HC_gene_0980_tx_205 68 - 162415 162937 . 1 523 0 -chrIII 162415 163025 HC_gene_0980_tx_206 21 - 162415 163025 . 1 611 0 -chrIII 162415 163219 HC_gene_0980_tx_40 373 - 162415 163219 . 1 805 0 -chrIII 162415 163219 HC_gene_0980_tx_41 1 - 162415 163219 . 2 65,697 0,108 -chrIII 162415 163219 HC_gene_0980_tx_42 1 - 162415 163219 . 2 359,407 0,398 -chrIII 162415 163219 HC_gene_0980_tx_43 1 - 162415 163219 . 2 452,309 0,496 -chrIII 162415 163219 HC_gene_0980_tx_44 1 - 162415 163219 . 2 629,94 0,711 -chrIII 162416 162725 HC_gene_0980_tx_130 41 - 162416 162725 . 1 310 0 -chrIII 162416 162851 HC_gene_0980_tx_207 11 - 162416 162851 . 1 436 0 -chrIII 162416 162937 HC_gene_0980_tx_208 34 - 162416 162937 . 1 522 0 -chrIII 162416 163025 HC_gene_0980_tx_209 20 - 162416 163025 . 1 610 0 -chrIII 162416 163219 HC_gene_0980_tx_45 246 - 162416 163219 . 1 804 0 -chrIII 162416 163219 HC_gene_0980_tx_46 1 - 162416 163219 . 2 465,271 0,533 -chrIII 162417 162725 HC_gene_0980_tx_131 13 - 162417 162725 . 1 309 0 -chrIII 162417 162851 HC_gene_0980_tx_210 6 - 162417 162851 . 1 435 0 -chrIII 162417 162937 HC_gene_0980_tx_211 11 - 162417 162937 . 1 521 0 -chrIII 162417 163025 HC_gene_0980_tx_212 10 - 162417 163025 . 1 609 0 -chrIII 162417 163219 HC_gene_0980_tx_47 91 - 162417 163219 . 1 803 0 -chrIII 162418 162725 HC_gene_0980_tx_132 20 - 162418 162725 . 1 308 0 -chrIII 162418 162851 HC_gene_0980_tx_213 11 - 162418 162851 . 1 434 0 -chrIII 162418 162937 HC_gene_0980_tx_214 30 - 162418 162937 . 1 520 0 -chrIII 162418 163025 HC_gene_0980_tx_215 1 - 162418 163025 . 2 290,219 0,389 -chrIII 162418 163025 HC_gene_0980_tx_216 14 - 162418 163025 . 1 608 0 -chrIII 162418 163219 HC_gene_0980_tx_48 215 - 162418 163219 . 1 802 0 -chrIII 162418 163219 HC_gene_0980_tx_49 1 - 162418 163219 . 2 552,111 0,691 -chrIII 162418 163219 HC_gene_0980_tx_50 1 - 162418 163219 . 2 249,477 0,325 -chrIII 162418 163219 HC_gene_0980_tx_51 1 - 162418 163219 . 2 640,118 0,684 -chrIII 162418 163219 HC_gene_0980_tx_52 1 - 162418 163219 . 2 334,390 0,412 -chrIII 162419 162725 HC_gene_0980_tx_133 15 - 162419 162725 . 1 307 0 -chrIII 162419 162851 HC_gene_0980_tx_217 8 - 162419 162851 . 1 433 0 -chrIII 162419 162937 HC_gene_0980_tx_218 10 - 162419 162937 . 1 519 0 -chrIII 162419 163025 HC_gene_0980_tx_219 6 - 162419 163025 . 1 607 0 -chrIII 162419 163219 HC_gene_0980_tx_53 61 - 162419 163219 . 1 801 0 -chrIII 162420 162725 HC_gene_0980_tx_134 4 - 162420 162725 . 1 306 0 -chrIII 162420 162851 HC_gene_0980_tx_220 3 - 162420 162851 . 1 432 0 -chrIII 162420 162937 HC_gene_0980_tx_221 9 - 162420 162937 . 1 518 0 -chrIII 162420 163025 HC_gene_0980_tx_222 2 - 162420 163025 . 1 606 0 -chrIII 162420 163219 HC_gene_0980_tx_54 42 - 162420 163219 . 1 800 0 -chrIII 162420 163219 HC_gene_0980_tx_55 1 - 162420 163219 . 2 550,191 0,609 -chrIII 162421 162725 HC_gene_0980_tx_135 9 - 162421 162725 . 1 305 0 -chrIII 162421 162851 HC_gene_0980_tx_223 5 - 162421 162851 . 1 431 0 -chrIII 162421 162937 HC_gene_0980_tx_224 7 - 162421 162937 . 1 517 0 -chrIII 162421 163025 HC_gene_0980_tx_225 8 - 162421 163025 . 1 605 0 -chrIII 162421 163219 HC_gene_0980_tx_56 48 - 162421 163219 . 1 799 0 -chrIII 162422 162725 HC_gene_0980_tx_136 44 - 162422 162725 . 1 304 0 -chrIII 162422 162851 HC_gene_0980_tx_226 11 - 162422 162851 . 1 430 0 -chrIII 162422 162937 HC_gene_0980_tx_227 31 - 162422 162937 . 1 516 0 -chrIII 162422 163025 HC_gene_0980_tx_228 24 - 162422 163025 . 1 604 0 -chrIII 162422 163025 HC_gene_0980_tx_229 1 - 162422 163025 . 2 445,52 0,552 -chrIII 162422 163219 HC_gene_0980_tx_57 243 - 162422 163219 . 1 798 0 -chrIII 162422 163219 HC_gene_0980_tx_58 1 - 162422 163219 . 2 330,417 0,381 -chrIII 162422 163381 HC_gene_0980_tx_59 2 - 162422 163381 . 1 960 0 -chrIII 162423 162725 HC_gene_0980_tx_137 6 - 162423 162725 . 1 303 0 -chrIII 162423 162851 HC_gene_0980_tx_230 2 - 162423 162851 . 1 429 0 -chrIII 162423 162937 HC_gene_0980_tx_231 10 - 162423 162937 . 1 515 0 -chrIII 162423 163025 HC_gene_0980_tx_232 6 - 162423 163025 . 1 603 0 -chrIII 162423 163219 HC_gene_0980_tx_60 79 - 162423 163219 . 1 797 0 -chrIII 162423 163219 HC_gene_0980_tx_61 1 - 162423 163219 . 2 57,493 0,304 -chrIII 162424 162725 HC_gene_0980_tx_138 27 - 162424 162725 . 1 302 0 -chrIII 162424 162851 HC_gene_0980_tx_233 14 - 162424 162851 . 1 428 0 -chrIII 162424 162937 HC_gene_0980_tx_234 26 - 162424 162937 . 1 514 0 -chrIII 162424 163025 HC_gene_0980_tx_235 14 - 162424 163025 . 1 602 0 -chrIII 162424 163219 HC_gene_0980_tx_62 165 - 162424 163219 . 1 796 0 -chrIII 162425 162725 HC_gene_0980_tx_139 2 - 162425 162725 . 1 301 0 -chrIII 162425 162851 HC_gene_0980_tx_236 3 - 162425 162851 . 1 427 0 -chrIII 162425 162937 HC_gene_0980_tx_237 2 - 162425 162937 . 1 513 0 -chrIII 162425 163025 HC_gene_0980_tx_238 1 - 162425 163025 . 1 601 0 -chrIII 162425 163219 HC_gene_0980_tx_63 11 - 162425 163219 . 1 795 0 -chrIII 162425 163219 HC_gene_0980_tx_64 1 - 162425 163219 . 2 506,156 0,639 -chrIII 162426 162725 HC_gene_0980_tx_140 7 - 162426 162725 . 1 300 0 -chrIII 162426 162937 HC_gene_0980_tx_239 4 - 162426 162937 . 1 512 0 -chrIII 162426 163025 HC_gene_0980_tx_240 4 - 162426 163025 . 1 600 0 -chrIII 162426 163219 HC_gene_0980_tx_65 32 - 162426 163219 . 1 794 0 -chrIII 162427 162725 HC_gene_0980_tx_141 6 - 162427 162725 . 1 299 0 -chrIII 162427 162851 HC_gene_0980_tx_241 2 - 162427 162851 . 1 425 0 -chrIII 162427 162937 HC_gene_0980_tx_242 3 - 162427 162937 . 1 511 0 -chrIII 162427 163025 HC_gene_0980_tx_243 4 - 162427 163025 . 1 599 0 -chrIII 162427 163219 HC_gene_0980_tx_66 30 - 162427 163219 . 1 793 0 -chrIII 162428 162725 HC_gene_0980_tx_142 1 - 162428 162725 . 1 298 0 -chrIII 162428 163219 HC_gene_0980_tx_67 5 - 162428 163219 . 1 792 0 -chrIII 162429 162725 HC_gene_0980_tx_143 15 - 162429 162725 . 1 297 0 -chrIII 162429 162851 HC_gene_0980_tx_244 9 - 162429 162851 . 1 423 0 -chrIII 162429 162937 HC_gene_0980_tx_245 18 - 162429 162937 . 1 509 0 -chrIII 162429 163025 HC_gene_0980_tx_246 9 - 162429 163025 . 1 597 0 -chrIII 162429 163219 HC_gene_0980_tx_68 97 - 162429 163219 . 1 791 0 -chrIII 162430 162725 HC_gene_0980_tx_144 16 - 162430 162725 . 1 296 0 -chrIII 162430 162851 HC_gene_0980_tx_247 6 - 162430 162851 . 1 422 0 -chrIII 162430 162937 HC_gene_0980_tx_248 29 - 162430 162937 . 1 508 0 -chrIII 162430 163025 HC_gene_0980_tx_249 12 - 162430 163025 . 1 596 0 -chrIII 162430 163025 HC_gene_0980_tx_250 1 - 162430 163025 . 2 344,200 0,396 -chrIII 162430 163219 HC_gene_0980_tx_69 153 - 162430 163219 . 1 790 0 -chrIII 162431 162725 HC_gene_0980_tx_145 4 - 162431 162725 . 1 295 0 -chrIII 162431 162851 HC_gene_0980_tx_251 5 - 162431 162851 . 1 421 0 -chrIII 162431 162937 HC_gene_0980_tx_252 12 - 162431 162937 . 1 507 0 -chrIII 162431 163025 HC_gene_0980_tx_253 7 - 162431 163025 . 1 595 0 -chrIII 162431 163219 HC_gene_0980_tx_70 82 - 162431 163219 . 1 789 0 -chrIII 162432 162725 HC_gene_0980_tx_146 2 - 162432 162725 . 1 294 0 -chrIII 162432 162851 HC_gene_0980_tx_254 1 - 162432 162851 . 1 420 0 -chrIII 162432 162937 HC_gene_0980_tx_255 1 - 162432 162937 . 1 506 0 -chrIII 162432 163025 HC_gene_0980_tx_256 1 - 162432 163025 . 1 594 0 -chrIII 162432 163219 HC_gene_0980_tx_71 11 - 162432 163219 . 1 788 0 -chrIII 162433 162725 HC_gene_0980_tx_147 3 - 162433 162725 . 1 293 0 -chrIII 162433 162937 HC_gene_0980_tx_257 9 - 162433 162937 . 1 505 0 -chrIII 162433 163025 HC_gene_0980_tx_258 2 - 162433 163025 . 1 593 0 -chrIII 162433 163219 HC_gene_0980_tx_72 35 - 162433 163219 . 1 787 0 -chrIII 162434 162725 HC_gene_0980_tx_148 1 - 162434 162725 . 1 292 0 -chrIII 162434 162851 HC_gene_0980_tx_259 3 - 162434 162851 . 1 418 0 -chrIII 162434 162937 HC_gene_0980_tx_260 3 - 162434 162937 . 1 504 0 -chrIII 162434 163025 HC_gene_0980_tx_261 1 - 162434 163025 . 1 592 0 -chrIII 162434 163219 HC_gene_0980_tx_73 16 - 162434 163219 . 1 786 0 -chrIII 162435 162725 HC_gene_0980_tx_149 1 - 162435 162725 . 1 291 0 -chrIII 162435 162851 HC_gene_0980_tx_262 1 - 162435 162851 . 1 417 0 -chrIII 162435 162937 HC_gene_0980_tx_263 5 - 162435 162937 . 1 503 0 -chrIII 162435 163219 HC_gene_0980_tx_74 37 - 162435 163219 . 1 785 0 -chrIII 162436 162725 HC_gene_0980_tx_150 1 - 162436 162725 . 1 290 0 -chrIII 162436 162851 HC_gene_0980_tx_264 1 - 162436 162851 . 1 416 0 -chrIII 162436 163025 HC_gene_0980_tx_265 4 - 162436 163025 . 1 590 0 -chrIII 162436 163219 HC_gene_0980_tx_75 9 - 162436 163219 . 1 784 0 -chrIII 162437 162725 HC_gene_0980_tx_151 1 - 162437 162725 . 1 289 0 -chrIII 162437 162851 HC_gene_0980_tx_266 1 - 162437 162851 . 1 415 0 -chrIII 162437 162937 HC_gene_0980_tx_267 1 - 162437 162937 . 1 501 0 -chrIII 162437 163025 HC_gene_0980_tx_268 2 - 162437 163025 . 1 589 0 -chrIII 162437 163219 HC_gene_0980_tx_76 18 - 162437 163219 . 1 783 0 -chrIII 162437 163219 HC_gene_0980_tx_77 1 - 162437 163219 . 2 35,651 0,132 -chrIII 162438 162937 HC_gene_0980_tx_269 3 - 162438 162937 . 1 500 0 -chrIII 162438 163219 HC_gene_0980_tx_78 16 - 162438 163219 . 1 782 0 -chrIII 162439 162725 HC_gene_0980_tx_152 1 - 162439 162725 . 1 287 0 -chrIII 162439 162851 HC_gene_0980_tx_270 1 - 162439 162851 . 1 413 0 -chrIII 162439 162937 HC_gene_0980_tx_271 1 - 162439 162937 . 1 499 0 -chrIII 162439 163219 HC_gene_0980_tx_79 15 - 162439 163219 . 1 781 0 -chrIII 162440 163219 HC_gene_0980_tx_80 6 - 162440 163219 . 1 780 0 -chrIII 162440 163219 HC_gene_0980_tx_81 1 - 162440 163219 . 2 547,94 0,686 -chrIII 162441 162937 HC_gene_0980_tx_272 1 - 162441 162937 . 1 497 0 -chrIII 162441 163219 HC_gene_0980_tx_82 6 - 162441 163219 . 1 779 0 -chrIII 162442 162725 HC_gene_0980_tx_153 1 - 162442 162725 . 1 284 0 -chrIII 162442 162937 HC_gene_0980_tx_273 2 - 162442 162937 . 1 496 0 -chrIII 162442 163219 HC_gene_0980_tx_83 4 - 162442 163219 . 1 778 0 -chrIII 162443 162725 HC_gene_0980_tx_154 1 - 162443 162725 . 1 283 0 -chrIII 162443 163219 HC_gene_0980_tx_84 5 - 162443 163219 . 1 777 0 -chrIII 162444 162937 HC_gene_0980_tx_274 1 - 162444 162937 . 1 494 0 -chrIII 162444 163219 HC_gene_0980_tx_85 1 - 162444 163219 . 1 776 0 -chrIII 162445 163219 HC_gene_0980_tx_86 4 - 162445 163219 . 1 775 0 -chrIII 162447 163219 HC_gene_0980_tx_87 4 - 162447 163219 . 1 773 0 -chrIII 162448 163219 HC_gene_0980_tx_88 1 - 162448 163219 . 1 772 0 -chrIII 162450 162725 HC_gene_0980_tx_155 1 - 162450 162725 . 1 276 0 -chrIII 162450 163219 HC_gene_0980_tx_89 6 - 162450 163219 . 1 770 0 -chrIII 162451 163219 HC_gene_0980_tx_90 2 - 162451 163219 . 1 769 0 -chrIII 162452 163219 HC_gene_0980_tx_91 2 - 162452 163219 . 1 768 0 -chrIII 162453 163025 HC_gene_0980_tx_275 1 - 162453 163025 . 1 573 0 -chrIII 162453 163219 HC_gene_0980_tx_92 7 - 162453 163219 . 1 767 0 -chrIII 162454 163219 HC_gene_0980_tx_93 1 - 162454 163219 . 1 766 0 -chrIII 162456 163219 HC_gene_0980_tx_94 1 - 162456 163219 . 1 764 0 -chrIII 162457 163219 HC_gene_0980_tx_95 1 - 162457 163219 . 1 763 0 -chrIII 162458 162937 HC_gene_0980_tx_276 2 - 162458 162937 . 1 480 0 -chrIII 162458 163025 HC_gene_0980_tx_277 1 - 162458 163025 . 1 568 0 -chrIII 162458 163219 HC_gene_0980_tx_96 12 - 162458 163219 . 1 762 0 -chrIII 162459 162725 HC_gene_0980_tx_156 2 - 162459 162725 . 1 267 0 -chrIII 162459 162937 HC_gene_0980_tx_278 4 - 162459 162937 . 1 479 0 -chrIII 162459 163025 HC_gene_0980_tx_279 1 - 162459 163025 . 1 567 0 -chrIII 162459 163219 HC_gene_0980_tx_97 6 - 162459 163219 . 1 761 0 -chrIII 162460 162725 HC_gene_0980_tx_157 1 - 162460 162725 . 1 266 0 -chrIII 162460 162851 HC_gene_0980_tx_280 2 - 162460 162851 . 1 392 0 -chrIII 162460 162937 HC_gene_0980_tx_281 4 - 162460 162937 . 1 478 0 -chrIII 162460 163219 HC_gene_0980_tx_98 5 - 162460 163219 . 1 760 0 -chrIII 162461 162937 HC_gene_0980_tx_282 1 - 162461 162937 . 1 477 0 -chrIII 162461 163025 HC_gene_0980_tx_283 1 - 162461 163025 . 1 565 0 -chrIII 162461 163219 HC_gene_0980_tx_99 1 - 162461 163219 . 1 759 0 -chrIII 162462 162851 HC_gene_0980_tx_284 1 - 162462 162851 . 1 390 0 -chrIII 162462 162937 HC_gene_0980_tx_285 1 - 162462 162937 . 1 476 0 -chrIII 162463 162937 HC_gene_0980_tx_286 1 - 162463 162937 . 1 475 0 -chrIII 162463 163219 HC_gene_0980_tx_100 9 - 162463 163219 . 1 757 0 -chrIII 162464 162725 HC_gene_0980_tx_158 2 - 162464 162725 . 1 262 0 -chrIII 162464 162851 HC_gene_0980_tx_287 1 - 162464 162851 . 1 388 0 -chrIII 162464 162937 HC_gene_0980_tx_288 3 - 162464 162937 . 1 474 0 -chrIII 162464 163219 HC_gene_0980_tx_101 12 - 162464 163219 . 1 756 0 -chrIII 162465 162725 HC_gene_0980_tx_159 3 - 162465 162725 . 1 261 0 -chrIII 162465 162851 HC_gene_0980_tx_289 1 - 162465 162851 . 1 387 0 -chrIII 162465 162937 HC_gene_0980_tx_290 2 - 162465 162937 . 1 473 0 -chrIII 162465 163025 HC_gene_0980_tx_291 2 - 162465 163025 . 1 561 0 -chrIII 162465 163219 HC_gene_0980_tx_102 11 - 162465 163219 . 1 755 0 -chrIII 162466 162725 HC_gene_0980_tx_160 4 - 162466 162725 . 1 260 0 -chrIII 162466 162851 HC_gene_0980_tx_292 3 - 162466 162851 . 1 386 0 -chrIII 162466 162937 HC_gene_0980_tx_293 2 - 162466 162937 . 1 472 0 -chrIII 162466 163025 HC_gene_0980_tx_294 2 - 162466 163025 . 1 560 0 -chrIII 162466 163219 HC_gene_0980_tx_103 32 - 162466 163219 . 1 754 0 -chrIII 162467 162725 HC_gene_0980_tx_161 4 - 162467 162725 . 1 259 0 -chrIII 162467 162851 HC_gene_0980_tx_295 2 - 162467 162851 . 1 385 0 -chrIII 162467 162937 HC_gene_0980_tx_296 6 - 162467 162937 . 1 471 0 -chrIII 162467 163025 HC_gene_0980_tx_297 2 - 162467 163025 . 1 559 0 -chrIII 162467 163219 HC_gene_0980_tx_104 40 - 162467 163219 . 1 753 0 -chrIII 162467 163219 HC_gene_0980_tx_105 1 - 162467 163219 . 2 414,219 0,534 -chrIII 162468 162725 HC_gene_0980_tx_162 3 - 162468 162725 . 1 258 0 -chrIII 162468 162937 HC_gene_0980_tx_298 5 - 162468 162937 . 1 470 0 -chrIII 162468 163025 HC_gene_0980_tx_299 2 - 162468 163025 . 1 558 0 -chrIII 162468 163219 HC_gene_0980_tx_106 17 - 162468 163219 . 1 752 0 -chrIII 162469 162725 HC_gene_0980_tx_163 4 - 162469 162725 . 1 257 0 -chrIII 162469 162851 HC_gene_0980_tx_300 4 - 162469 162851 . 1 383 0 -chrIII 162469 162937 HC_gene_0980_tx_301 8 - 162469 162937 . 1 469 0 -chrIII 162469 163025 HC_gene_0980_tx_302 1 - 162469 163025 . 1 557 0 -chrIII 162469 163219 HC_gene_0980_tx_107 39 - 162469 163219 . 1 751 0 -chrIII 162470 162725 HC_gene_0980_tx_164 3 - 162470 162725 . 1 256 0 -chrIII 162470 162851 HC_gene_0980_tx_303 4 - 162470 162851 . 1 382 0 -chrIII 162470 163025 HC_gene_0980_tx_304 2 - 162470 163025 . 1 556 0 -chrIII 162470 163219 HC_gene_0980_tx_108 11 - 162470 163219 . 1 750 0 -chrIII 162471 162725 HC_gene_0980_tx_165 1 - 162471 162725 . 1 255 0 -chrIII 162471 162851 HC_gene_0980_tx_305 2 - 162471 162851 . 1 381 0 -chrIII 162471 163219 HC_gene_0980_tx_109 8 - 162471 163219 . 1 749 0 -chrIII 162472 162937 HC_gene_0980_tx_306 1 - 162472 162937 . 1 466 0 -chrIII 162472 163025 HC_gene_0980_tx_307 1 - 162472 163025 . 1 554 0 -chrIII 162472 163219 HC_gene_0980_tx_110 10 - 162472 163219 . 1 748 0 -chrIII 162473 162725 HC_gene_0980_tx_166 1 - 162473 162725 . 1 253 0 -chrIII 162473 163219 HC_gene_0980_tx_111 13 - 162473 163219 . 1 747 0 -chrIII 162631 162937 HC_gene_0980_tx_308 4 - 162631 162937 . 1 307 0 -chrIII 162631 163025 HC_gene_0980_tx_309 3 - 162631 163025 . 1 395 0 -chrIII 162631 163202 HC_gene_0980_tx_310 1 - 162631 163202 . 2 310,178 0,394 -chrIII 162631 163219 HC_gene_0980_tx_311 35 - 162631 163219 . 1 589 0 -chrIII 162820 163219 HC_gene_0980_tx_312 4 - 162820 163219 . 1 400 0 -chrIII 163297 164041 MC_gene_0854_tx_1 1 + 163297 164041 . 1 745 0 -chrIII 163305 166395 HC_gene_0981_tx_1 1 - 163305 166395 . 1 3091 0 -chrIII 163888 164201 HC_gene_0981_tx_3 8 - 163888 164201 . 1 314 0 -chrIII 163888 164663 HC_gene_0981_tx_4 3 - 163888 164663 . 1 776 0 -chrIII 163888 165019 HC_gene_0981_tx_5 1 - 163888 165019 . 1 1132 0 -chrIII 163888 166395 HC_gene_0981_tx_2 18 - 163888 166395 . 1 2508 0 -chrIII 166536 166795 MC_gene_0855_tx_1 1 + 166536 166795 . 1 260 0 -chrIII 166631 168175 HC_gene_0982_tx_1 1 - 166631 168175 . 1 1545 0 -chrIII 166706 168175 HC_gene_0982_tx_2 12 - 166706 168175 . 1 1470 0 -chrIII 167259 168175 HC_gene_0982_tx_3 1 - 167259 168175 . 1 917 0 -chrIII 167267 168175 HC_gene_0982_tx_4 1 - 167267 168175 . 1 909 0 -chrIII 168721 169271 HC_gene_0983_tx_1 3 - 168721 169271 . 1 551 0 -chrIII 168906 169271 HC_gene_0983_tx_2 15 - 168906 169271 . 1 366 0 -chrIII 169031 169547 HC_gene_0856_tx_1 482 + 169031 169547 . 1 517 0 -chrIII 169031 169547 HC_gene_0856_tx_2 1 + 169031 169547 . 2 208,214 0,303 -chrIII 169031 169547 HC_gene_0856_tx_3 1 + 169031 169547 . 2 326,140 0,377 -chrIII 169031 169547 HC_gene_0856_tx_4 1 + 169031 169547 . 2 146,266 0,251 -chrIII 169031 169547 HC_gene_0856_tx_5 1 + 169031 169547 . 2 318,140 0,377 -chrIII 169031 169810 HC_gene_0856_tx_6 1 + 169031 169810 . 2 306,107 0,673 -chrIII 169031 169810 HC_gene_0856_tx_7 1 + 169031 169810 . 2 304,107 0,673 -chrIII 169031 169810 HC_gene_0856_tx_8 3 + 169031 169810 . 2 307,107 0,673 -chrIII 169031 169810 HC_gene_0856_tx_9 1 + 169031 169810 . 2 308,107 0,673 -chrIII 169031 169865 HC_gene_0856_tx_10 1 + 169031 169865 . 2 305,162 0,673 -chrIII 169031 169865 HC_gene_0856_tx_11 1 + 169031 169865 . 2 296,160 0,675 -chrIII 169178 169547 HC_gene_0856_tx_14 2 + 169178 169547 . 1 370 0 -chrIII 169178 169810 HC_gene_0856_tx_12 20 + 169178 169810 . 1 633 0 -chrIII 169178 169865 HC_gene_0856_tx_13 42 + 169178 169865 . 1 688 0 -chrIII 169466 169810 HC_gene_0856_tx_15 3 + 169466 169810 . 1 345 0 -chrIII 169466 169865 HC_gene_0856_tx_16 7 + 169466 169865 . 1 400 0 -chrIII 169734 172519 HC_gene_0984_tx_1 4 - 169734 172519 . 1 2786 0 -chrIII 169980 171801 LC_gene_0857_tx_1 1 + 169980 171801 . 1 1822 0 -chrIII 170163 172519 HC_gene_0984_tx_2 11 - 170163 172519 . 1 2357 0 -chrIII 170628 172519 HC_gene_0984_tx_3 1 - 170628 172519 . 1 1892 0 -chrIII 170629 172519 HC_gene_0984_tx_4 1 - 170629 172519 . 2 765,1012 0,879 -chrIII 170633 172519 HC_gene_0984_tx_5 1 - 170633 172519 . 1 1887 0 -chrIII 170674 172519 HC_gene_0984_tx_6 1 - 170674 172519 . 1 1846 0 -chrIII 170687 172519 HC_gene_0984_tx_7 1 - 170687 172519 . 1 1833 0 -chrIII 170693 172519 HC_gene_0984_tx_8 1 - 170693 172519 . 1 1827 0 -chrIII 170721 172519 HC_gene_0984_tx_9 1 - 170721 172519 . 1 1799 0 -chrIII 170732 172519 HC_gene_0984_tx_10 1 - 170732 172519 . 1 1788 0 -chrIII 171911 172871 MC_gene_0858_tx_1 1 + 171911 172871 . 1 961 0 -chrIII 172643 173065 HC_gene_0985_tx_1 1 - 172643 173065 . 1 423 0 -chrIII 172643 173487 HC_gene_0985_tx_2 1 - 172643 173487 . 1 845 0 -chrIII 172643 173487 HC_gene_0985_tx_3 1 - 172643 173487 . 2 473,289 0,556 -chrIII 172761 173065 HC_gene_0985_tx_13 90 - 172761 173065 . 1 305 0 -chrIII 172761 173487 HC_gene_0985_tx_4 640 - 172761 173487 . 2 355,289 0,438 -chrIII 172761 173487 HC_gene_0985_tx_5 13 - 172761 173487 . 1 727 0 -chrIII 172761 173487 HC_gene_0985_tx_6 4 - 172761 173487 . 2 332,289 0,438 -chrIII 172761 173487 HC_gene_0985_tx_7 1 - 172761 173487 . 2 355,250 0,477 -chrIII 172761 173487 HC_gene_0985_tx_8 1 - 172761 173487 . 2 379,226 0,501 -chrIII 172761 173487 HC_gene_0985_tx_9 4 - 172761 173487 . 2 355,278 0,449 -chrIII 172761 173487 HC_gene_0985_tx_10 1 - 172761 173487 . 2 355,226 0,501 -chrIII 172761 173487 HC_gene_0985_tx_11 1 - 172761 173487 . 2 335,289 0,438 -chrIII 172761 173487 HC_gene_0985_tx_12 1 - 172761 173487 . 2 344,289 0,438 -chrIII 173653 175207 HC_gene_0986_tx_1 7 - 173653 175207 . 1 1555 0 -chrIII 173653 175914 HC_gene_0986_tx_2 1 - 173653 175914 . 2 907,767 0,1495 -chrIII 173653 175914 HC_gene_0986_tx_3 3 - 173653 175914 . 1 2262 0 -chrIII 173653 176524 HC_gene_0986_tx_4 10 - 173653 176524 . 1 2872 0 -chrIII 174585 175800 LC_gene_0859_tx_1 1 + 174585 175800 . 1 1216 0 -chrIII 176578 176916 HC_gene_0987_tx_1 57 - 176578 176916 . 1 339 0 -chrIII 176578 176961 HC_gene_0987_tx_2 1 - 176578 176961 . 1 384 0 -chrIII 176779 177094 MC_gene_0860_tx_1 1 + 176779 177094 . 1 316 0 -chrIII 177098 177396 HC_gene_0861_tx_1 2 + 177098 177396 . 1 299 0 -chrIII 177397 177696 HC_gene_0988_tx_1 4790 - 177397 177696 . 1 300 0 -chrIII 177397 178242 HC_gene_0988_tx_2 70 - 177397 178242 . 2 510,29 0,817 -chrIII 177397 178242 HC_gene_0988_tx_3 37 - 177397 178242 . 1 846 0 -chrIII 178502 178798 HC_gene_0989_tx_1 24 - 178502 178798 . 1 297 0 -chrIII 179032 179248 HC_gene_0862_tx_1 7 + 179032 179248 . 1 217 0 -chrIII 179393 180524 HC_gene_0863_tx_1 1 + 179393 180524 . 1 1132 0 -chrIII 179393 181079 HC_gene_0863_tx_2 1 + 179393 181079 . 1 1687 0 -chrIII 181500 186105 MC_gene_0864_tx_1 1 + 181500 186105 . 1 4606 0 -chrIII 183603 185700 MC_gene_0864_tx_2 1 + 183603 185700 . 1 2098 0 -chrIII 183743 186008 MC_gene_0990_tx_1 1 - 183743 186008 . 1 2266 0 -chrIII 186266 190322 HC_gene_0865_tx_1 2 + 186266 190322 . 1 4057 0 -chrIII 187856 190322 HC_gene_0865_tx_2 1 + 187856 190322 . 2 2291,90 0,2377 -chrIII 188538 190322 HC_gene_0865_tx_3 1 + 188538 190322 . 1 1785 0 -chrIII 188589 190322 HC_gene_0865_tx_4 3 + 188589 190322 . 1 1734 0 -chrIII 189269 190322 HC_gene_0865_tx_5 8 + 189269 190322 . 1 1054 0 -chrIII 189476 190322 HC_gene_0865_tx_6 9 + 189476 190322 . 1 847 0 -chrIII 190565 191798 HC_gene_0866_tx_1 269 + 190565 191798 . 1 1234 0 -chrIII 190565 192063 HC_gene_0866_tx_2 2 + 190565 192063 . 1 1499 0 -chrIII 191014 193037 HC_gene_0991_tx_1 1 - 191014 193037 . 2 823,551 0,1473 -chrIII 191141 191798 HC_gene_0866_tx_3 47 + 191141 191798 . 1 658 0 -chrIII 191518 191798 HC_gene_0866_tx_4 26 + 191518 191798 . 1 281 0 -chrIII 191705 192900 HC_gene_0991_tx_2 8 - 191705 192900 . 1 1196 0 -chrIII 191705 192900 HC_gene_0991_tx_3 1 - 191705 192900 . 2 368,694 0,502 -chrIII 191705 193037 HC_gene_0991_tx_4 85 - 191705 193037 . 1 1333 0 -chrIII 191705 193037 HC_gene_0991_tx_5 1 - 191705 193037 . 2 102,1160 0,173 -chrIII 191705 193037 HC_gene_0991_tx_6 1 - 191705 193037 . 2 793,439 0,894 -chrIII 191705 193037 HC_gene_0991_tx_7 1 - 191705 193037 . 2 742,347 0,986 -chrIII 193244 194386 HC_gene_0867_tx_1 106 + 193244 194386 . 1 1143 0 -chrIII 193544 194386 HC_gene_0867_tx_2 13 + 193544 194386 . 1 843 0 -chrIII 193849 194386 HC_gene_0867_tx_3 20 + 193849 194386 . 1 538 0 -chrIII 193939 194386 HC_gene_0867_tx_4 9 + 193939 194386 . 1 448 0 -chrIII 194319 196741 HC_gene_0992_tx_1 1 - 194319 196741 . 1 2423 0 -chrIII 194319 196896 HC_gene_0992_tx_2 1 - 194319 196896 . 2 1195,1292 0,1286 -chrIII 194319 197228 HC_gene_0992_tx_3 18 - 194319 197228 . 1 2910 0 -chrIII 194319 197228 HC_gene_0992_tx_4 1 - 194319 197228 . 2 1917,937 0,1973 -chrIII 194319 197228 HC_gene_0992_tx_5 1 - 194319 197228 . 2 1173,1624 0,1286 -chrIII 194417 196312 LC_gene_0868_tx_1 1 + 194417 196312 . 1 1896 0 -chrIII 197409 198637 MC_gene_0993_tx_1 1 - 197409 198637 . 1 1229 0 -chrIII 197514 200180 MC_gene_0993_tx_2 1 - 197514 200180 . 1 2667 0 -chrIII 197654 198487 MC_gene_0993_tx_3 1 - 197654 198487 . 1 834 0 -chrIII 200421 201183 MC_gene_0869_tx_1 1 + 200421 201183 . 1 763 0 -chrIII 200980 202043 MC_gene_0994_tx_1 1 - 200980 202043 . 1 1064 0 -chrIII 201053 201563 MC_gene_0994_tx_2 1 - 201053 201563 . 1 511 0 -chrIII 202567 203183 HC_gene_0995_tx_1 1 - 202567 203183 . 1 617 0 -chrIII 202567 205421 HC_gene_0995_tx_2 1 - 202567 205421 . 1 2855 0 -chrIII 202734 205482 MC_gene_0870_tx_1 1 + 202734 205482 . 1 2749 0 -chrIII 202768 204913 MC_gene_0870_tx_2 1 + 202768 204913 . 1 2146 0 -chrIII 204906 205171 MC_gene_0870_tx_3 1 + 204906 205171 . 1 266 0 -chrIII 205789 206199 MC_gene_0871_tx_1 1 + 205789 206199 . 1 411 0 -chrIII 206093 206439 HC_gene_0996_tx_1 18 - 206093 206439 . 1 347 0 -chrIII 206093 206596 HC_gene_0996_tx_2 8 - 206093 206596 . 1 504 0 -chrIII 206093 206669 HC_gene_0996_tx_3 244 - 206093 206669 . 1 577 0 -chrIII 206698 207961 HC_gene_0997_tx_1 1 - 206698 207961 . 2 490,715 0,549 -chrIII 206771 207456 HC_gene_0997_tx_3 9 - 206771 207456 . 1 686 0 -chrIII 206771 207556 HC_gene_0997_tx_4 3 - 206771 207556 . 1 786 0 -chrIII 206771 207615 HC_gene_0997_tx_5 5 - 206771 207615 . 1 845 0 -chrIII 206771 207961 HC_gene_0997_tx_2 59 - 206771 207961 . 1 1191 0 -chrIII 206861 207961 MC_gene_0872_tx_1 1 + 206861 207961 . 1 1101 0 -chrIII 208129 208853 LC_gene_0998_tx_1 1 - 208129 208853 . 1 725 0 -chrIII 208133 209776 HC_gene_0873_tx_1 1 + 208133 209776 . 2 938,651 0,993 -chrIII 208133 209776 HC_gene_0873_tx_2 1 + 208133 209776 . 1 1644 0 -chrIII 208133 209958 HC_gene_0873_tx_3 1 + 208133 209958 . 1 1826 0 -chrIII 209712 210430 HC_gene_0999_tx_1 5 - 209712 210430 . 1 719 0 -chrIII 209803 210226 HC_gene_0999_tx_3 24 - 209803 210226 . 1 424 0 -chrIII 209803 210430 HC_gene_0999_tx_2 147 - 209803 210430 . 1 628 0 -chrIII 210515 211221 HC_gene_1000_tx_1 5 - 210515 211221 . 1 707 0 -chrIII 210515 211431 HC_gene_1000_tx_2 6 - 210515 211431 . 1 917 0 -chrIII 210515 211635 HC_gene_1000_tx_3 68 - 210515 211635 . 1 1121 0 -chrIII 211884 213957 HC_gene_0874_tx_1 18 + 211884 213957 . 1 2074 0 -chrIII 211884 213957 HC_gene_0874_tx_2 1 + 211884 213957 . 2 1130,893 0,1181 -chrIII 211884 213957 HC_gene_0874_tx_3 1 + 211884 213957 . 2 1083,898 0,1176 -chrIII 211884 213957 HC_gene_0874_tx_4 1 + 211884 213957 . 2 1103,908 0,1166 -chrIII 211884 213957 HC_gene_0874_tx_5 1 + 211884 213957 . 2 1214,794 0,1280 -chrIII 211884 213957 HC_gene_0874_tx_6 1 + 211884 213957 . 2 957,563 0,1511 -chrIII 211884 213957 HC_gene_0874_tx_7 1 + 211884 213957 . 2 1121,794 0,1280 -chrIII 211933 213856 LC_gene_1001_tx_1 1 - 211933 213856 . 1 1924 0 -chrIII 213896 214786 MC_gene_1002_tx_1 1 - 213896 214786 . 1 891 0 -chrIII 214061 214875 HC_gene_0875_tx_1 75 + 214061 214875 . 1 815 0 -chrIII 214061 214875 HC_gene_0875_tx_2 1 + 214061 214875 . 2 44,618 0,197 -chrIII 214061 214875 HC_gene_0875_tx_3 1 + 214061 214875 . 2 369,391 0,424 -chrIII 214061 214875 HC_gene_0875_tx_4 1 + 214061 214875 . 2 90,274 0,541 -chrIII 214309 214875 HC_gene_0875_tx_5 41 + 214309 214875 . 1 567 0 -chrIII 214375 214875 HC_gene_0875_tx_6 1 + 214375 214875 . 1 501 0 -chrIII 214486 214875 HC_gene_0875_tx_7 24 + 214486 214875 . 1 390 0 -chrIII 214952 216684 HC_gene_0876_tx_1 1 + 214952 216684 . 1 1733 0 -chrIII 214960 216684 HC_gene_0876_tx_2 9 + 214960 216684 . 1 1725 0 -chrIII 215218 216684 HC_gene_0876_tx_3 1 + 215218 216684 . 1 1467 0 -chrIII 216655 218329 HC_gene_0877_tx_1 308 + 216655 218329 . 1 1675 0 -chrIII 216976 218329 HC_gene_0877_tx_2 27 + 216976 218329 . 1 1354 0 -chrIII 217171 218329 HC_gene_0877_tx_3 60 + 217171 218329 . 1 1159 0 -chrIII 217570 218329 HC_gene_0877_tx_4 69 + 217570 218329 . 1 760 0 -chrIII 218174 220118 HC_gene_1003_tx_1 21 - 218174 220118 . 1 1945 0 -chrIII 218174 220118 HC_gene_1003_tx_2 1 - 218174 220118 . 2 840,991 0,954 -chrIII 218352 220118 HC_gene_1003_tx_3 7 - 218352 220118 . 1 1767 0 -chrIII 219278 220460 MC_gene_0878_tx_1 1 + 219278 220460 . 1 1183 0 -chrIII 220342 220728 HC_gene_1004_tx_1 15 - 220342 220728 . 1 387 0 -chrIII 220342 222798 HC_gene_1004_tx_2 4 - 220342 222798 . 1 2457 0 -chrIII 220342 223282 HC_gene_1004_tx_3 24 - 220342 223282 . 1 2941 0 -chrIII 220342 223282 HC_gene_1004_tx_4 1 - 220342 223282 . 2 2741,138 0,2803 -chrIII 220342 223282 HC_gene_1004_tx_5 1 - 220342 223282 . 2 656,2232 0,709 -chrIII 220342 223282 HC_gene_1004_tx_6 1 - 220342 223282 . 2 669,2208 0,733 -chrIII 223259 224250 HC_gene_1005_tx_1 1 - 223259 224250 . 1 992 0 -chrIII 223265 224242 HC_gene_1005_tx_2 1 - 223265 224242 . 1 978 0 -chrIII 223265 224245 HC_gene_1005_tx_3 1 - 223265 224245 . 1 981 0 -chrIII 223269 224229 HC_gene_1005_tx_4 1 - 223269 224229 . 1 961 0 -chrIII 223269 224231 HC_gene_1005_tx_5 1 - 223269 224231 . 1 963 0 -chrIII 223269 224250 HC_gene_1005_tx_6 1 - 223269 224250 . 1 982 0 -chrIII 223270 224234 HC_gene_1005_tx_7 1 - 223270 224234 . 1 965 0 -chrIII 223271 224229 HC_gene_1005_tx_8 1 - 223271 224229 . 1 959 0 -chrIII 223271 224250 HC_gene_1005_tx_9 1 - 223271 224250 . 1 980 0 -chrIII 223528 224350 HC_gene_0879_tx_1 9 + 223528 224350 . 1 823 0 -chrIII 224373 224858 HC_gene_0880_tx_1 193 + 224373 224858 . 1 486 0 -chrIII 224736 225200 HC_gene_1006_tx_1 1 - 224736 225200 . 1 465 0 -chrIII 224740 225200 HC_gene_1006_tx_2 1 - 224740 225200 . 1 461 0 -chrIII 224747 225200 HC_gene_1006_tx_3 1 - 224747 225200 . 1 454 0 -chrIII 225537 227684 HC_gene_0881_tx_1 1 + 225537 227684 . 2 532,611 0,1537 -chrIII 225537 227684 HC_gene_0881_tx_2 7 + 225537 227684 . 1 2148 0 -chrIII 225537 227816 HC_gene_0881_tx_3 20 + 225537 227816 . 1 2280 0 -chrIII 225537 227816 HC_gene_0881_tx_4 1 + 225537 227816 . 2 347,1517 0,763 -chrIII 225853 227684 HC_gene_0881_tx_5 1 + 225853 227684 . 1 1832 0 -chrIII 225853 227816 HC_gene_0881_tx_6 6 + 225853 227816 . 1 1964 0 -chrIII 226341 227816 HC_gene_0881_tx_7 9 + 226341 227816 . 1 1476 0 -chrIII 226668 227684 HC_gene_0881_tx_8 1 + 226668 227684 . 1 1017 0 -chrIII 226668 227816 HC_gene_0881_tx_9 10 + 226668 227816 . 1 1149 0 -chrIII 226668 227816 HC_gene_0881_tx_10 1 + 226668 227816 . 2 228,769 0,380 -chrIII 227471 227684 HC_gene_0881_tx_11 3 + 227471 227684 . 1 214 0 -chrIII 227471 227816 HC_gene_0881_tx_12 23 + 227471 227816 . 1 346 0 -chrIII 227675 228435 LC_gene_1007_tx_1 1 - 227675 228435 . 1 761 0 -chrIII 228286 229182 HC_gene_0882_tx_1 5 + 228286 229182 . 1 897 0 -chrIII 229231 231331 HC_gene_0883_tx_1 18 + 229231 231331 . 1 2101 0 -chrIII 230437 231331 HC_gene_0883_tx_2 5 + 230437 231331 . 1 895 0 -chrIII 231226 232059 LC_gene_1008_tx_1 1 - 231226 232059 . 1 834 0 -chrIII 231449 233151 HC_gene_0884_tx_1 3 + 231449 233151 . 1 1703 0 -chrIII 233052 234505 HC_gene_1009_tx_1 3 - 233052 234505 . 1 1454 0 -chrIII 233052 234505 HC_gene_1009_tx_2 1 - 233052 234505 . 2 1106,272 0,1182 -chrIII 233052 234636 HC_gene_1009_tx_3 3 - 233052 234636 . 1 1585 0 -chrIII 233052 234699 HC_gene_1009_tx_4 2 - 233052 234699 . 1 1648 0 -chrIII 233052 234699 HC_gene_1009_tx_5 1 - 233052 234699 . 2 992,577 0,1071 -chrIII 235144 236421 HC_gene_1010_tx_1 2 - 235144 236421 . 1 1278 0 -chrIII 237037 238646 MC_gene_1011_tx_1 1 - 237037 238646 . 1 1610 0 -chrIII 237082 240120 HC_gene_0885_tx_1 7 + 237082 240120 . 1 3039 0 -chrIII 238930 240120 HC_gene_0885_tx_2 113 + 238930 240120 . 1 1191 0 -chrIII 239595 240120 HC_gene_0885_tx_3 22 + 239595 240120 . 1 526 0 -chrIII 240031 240421 HC_gene_1012_tx_1 15 - 240031 240421 . 1 391 0 -chrIII 240031 240593 HC_gene_1012_tx_2 123 - 240031 240593 . 1 563 0 -chrIII 240722 242378 HC_gene_1013_tx_1 51 - 240722 242378 . 1 1657 0 -chrIII 240722 242378 HC_gene_1013_tx_2 1 - 240722 242378 . 2 656,896 0,761 -chrIII 240722 242378 HC_gene_1013_tx_3 1 - 240722 242378 . 2 715,423 0,1234 -chrIII 240722 242378 HC_gene_1013_tx_4 1 - 240722 242378 . 2 735,821 0,836 -chrIII 242514 246649 HC_gene_1014_tx_1 7 - 242514 246649 . 1 4136 0 -chrIII 242591 243642 HC_gene_0886_tx_1 1 + 242591 243642 . 1 1052 0 -chrIII 244494 246361 LC_gene_0887_tx_1 1 + 244494 246361 . 1 1868 0 -chrIII 246949 248024 HC_gene_0888_tx_1 73 + 246949 248024 . 1 1076 0 -chrIII 246949 248117 HC_gene_0888_tx_2 3 + 246949 248117 . 1 1169 0 -chrIII 246949 248117 HC_gene_0888_tx_3 1 + 246949 248117 . 2 252,774 0,395 -chrIII 247165 248024 HC_gene_0888_tx_4 6 + 247165 248024 . 1 860 0 -chrIII 247303 248024 HC_gene_0888_tx_5 6 + 247303 248024 . 1 722 0 -chrIII 247303 248117 HC_gene_0888_tx_6 1 + 247303 248117 . 1 815 0 -chrIII 247887 248811 HC_gene_1015_tx_1 28 - 247887 248811 . 1 925 0 -chrIII 248965 249322 HC_gene_0889_tx_1 85 + 248965 249322 . 1 358 0 -chrIII 249187 249829 HC_gene_1016_tx_1 11 - 249187 249829 . 1 643 0 -chrIII 249187 250047 HC_gene_1016_tx_2 67 - 249187 250047 . 1 861 0 -chrIII 250094 251641 HC_gene_1017_tx_1 11 - 250094 251641 . 1 1548 0 -chrIII 250094 251641 HC_gene_1017_tx_2 1 - 250094 251641 . 2 745,727 0,821 -chrIII 250094 252591 HC_gene_1017_tx_3 2 - 250094 252591 . 1 2498 0 -chrIII 250094 252591 HC_gene_1017_tx_4 1 - 250094 252591 . 2 455,1922 0,576 -chrIII 250094 252591 HC_gene_1017_tx_5 1 - 250094 252591 . 2 978,1476 0,1022 -chrIII 250094 252671 HC_gene_1017_tx_6 23 - 250094 252671 . 1 2578 0 -chrIII 250094 252671 HC_gene_1017_tx_7 1 - 250094 252671 . 2 1075,1391 0,1187 -chrIII 250094 252671 HC_gene_1017_tx_8 1 - 250094 252671 . 2 1239,1264 0,1314 -chrIII 250094 252671 HC_gene_1017_tx_9 1 - 250094 252671 . 2 1075,772 0,1806 -chrIII 252843 254291 HC_gene_0890_tx_1 1 + 252843 254291 . 2 222,1129 0,320 -chrIII 252846 254291 HC_gene_0890_tx_2 22 + 252846 254291 . 1 1446 0 -chrIII 253059 254291 HC_gene_0890_tx_3 6 + 253059 254291 . 1 1233 0 -chrIII 253223 254200 MC_gene_1018_tx_1 1 - 253223 254200 . 1 978 0 -chrIII 253287 254291 HC_gene_0890_tx_4 2 + 253287 254291 . 1 1005 0 -chrIII 258096 258650 MC_gene_1019_tx_1 1 - 258096 258650 . 1 555 0 -chrIII 258858 259416 HC_gene_0891_tx_1 258 + 258858 259416 . 1 559 0 -chrIII 258993 259416 HC_gene_0891_tx_2 36 + 258993 259416 . 1 424 0 -chrIII 259072 259416 HC_gene_0891_tx_3 18 + 259072 259416 . 1 345 0 -chrIII 259270 259743 MC_gene_1020_tx_1 1 - 259270 259743 . 1 474 0 -chrIII 259542 260079 HC_gene_0892_tx_1 91 + 259542 260079 . 1 538 0 -chrIII 259970 261625 HC_gene_1021_tx_1 9 - 259970 261625 . 1 1656 0 -chrIII 259970 261625 HC_gene_1021_tx_2 1 - 259970 261625 . 2 940,594 0,1062 -chrIII 259970 261625 HC_gene_1021_tx_3 1 - 259970 261625 . 2 1259,258 0,1398 -chrIII 259970 261625 HC_gene_1021_tx_4 1 - 259970 261625 . 2 352,1204 0,452 -chrIII 259970 262366 HC_gene_1021_tx_6 3 - 259970 262366 . 1 2397 0 -chrIII 259970 262487 HC_gene_1021_tx_7 1 - 259970 262487 . 1 2518 0 -chrIII 259970 262666 HC_gene_1021_tx_8 11 - 259970 262666 . 1 2697 0 -chrIII 259970 262666 HC_gene_1021_tx_9 1 - 259970 262666 . 2 2393,57 0,2640 -chrIII 259970 262666 HC_gene_1021_tx_10 1 - 259970 262666 . 2 2460,137 0,2560 -chrIII 260178 261625 HC_gene_1021_tx_5 1 - 260178 261625 . 1 1448 0 -chrIII 263041 263198 HC_gene_1022_tx_1 1 - 263041 263198 . 1 158 0 -chrIII 263341 264018 HC_gene_0893_tx_1 29 + 263341 264018 . 1 678 0 -chrIII 263562 264018 HC_gene_0893_tx_2 5 + 263562 264018 . 1 457 0 -chrIII 263786 264494 HC_gene_1023_tx_1 10 - 263786 264494 . 1 709 0 -chrIII 263943 264494 HC_gene_1023_tx_2 200 - 263943 264494 . 1 552 0 -chrIII 265025 266972 HC_gene_0894_tx_1 57 + 265025 266972 . 1 1948 0 -chrIII 265025 266972 HC_gene_0894_tx_2 1 + 265025 266972 . 2 406,591 0,1357 -chrIII 265025 266972 HC_gene_0894_tx_3 1 + 265025 266972 . 2 1570,302 0,1646 -chrIII 265524 266972 HC_gene_0894_tx_4 9 + 265524 266972 . 1 1449 0 -chrIII 265896 266972 HC_gene_0894_tx_5 19 + 265896 266972 . 1 1077 0 -chrIII 266110 266972 HC_gene_0894_tx_6 25 + 266110 266972 . 1 863 0 -chrIII 266173 266972 HC_gene_0894_tx_7 12 + 266173 266972 . 1 800 0 -chrIII 266274 266972 HC_gene_0894_tx_8 6 + 266274 266972 . 1 699 0 -chrIII 266345 266972 HC_gene_0894_tx_9 44 + 266345 266972 . 1 628 0 -chrIII 266345 266972 HC_gene_0894_tx_10 1 + 266345 266972 . 2 250,276 0,352 -chrIII 267137 272321 HC_gene_0895_tx_1 1 + 267137 272321 . 1 5185 0 -chrIII 270681 272321 HC_gene_0895_tx_2 13 + 270681 272321 . 1 1641 0 -chrIII 270681 272321 HC_gene_0895_tx_3 1 + 270681 272321 . 2 543,998 0,643 -chrIII 270681 272321 HC_gene_0895_tx_4 1 + 270681 272321 . 2 594,738 0,903 -chrIII 272241 272878 HC_gene_1024_tx_1 145 - 272241 272878 . 1 638 0 -chrIII 273103 273658 HC_gene_0896_tx_1 2 + 273103 273658 . 1 556 0 -chrIII 273103 274307 HC_gene_0896_tx_2 1 + 273103 274307 . 1 1205 0 -chrIII 273334 274032 LC_gene_1025_tx_1 1 - 273334 274032 . 1 699 0 -chrIII 274355 275895 HC_gene_0897_tx_1 1 + 274355 275895 . 1 1541 0 -chrIII 274355 277028 HC_gene_0897_tx_2 2 + 274355 277028 . 1 2674 0 -chrIII 275679 276247 LC_gene_1026_tx_1 1 - 275679 276247 . 1 569 0 -chrIII 276583 279857 HC_gene_1027_tx_1 1 - 276583 279857 . 2 1866,1340 0,1935 -chrIII 276583 279857 HC_gene_1027_tx_2 1 - 276583 279857 . 1 3275 0 -chrIII 278091 279857 HC_gene_1027_tx_3 1 - 278091 279857 . 1 1767 0 -chrIII 280087 280353 HC_gene_0898_tx_1 5 + 280087 280353 . 1 267 0 -chrIII 280431 281766 MC_gene_0899_tx_1 1 + 280431 281766 . 1 1336 0 -chrIII 281706 282014 MC_gene_0900_tx_1 1 + 281706 282014 . 1 309 0 -chrIII 282657 286528 HC_gene_0901_tx_1 1 + 282657 286528 . 1 3872 0 -chrIII 282910 286528 HC_gene_0901_tx_2 3 + 282910 286528 . 1 3619 0 -chrIII 283027 286528 HC_gene_0901_tx_3 2 + 283027 286528 . 1 3502 0 -chrIII 283117 286528 HC_gene_0901_tx_4 1 + 283117 286528 . 2 935,2430 0,982 -chrIII 283117 286528 HC_gene_0901_tx_5 2 + 283117 286528 . 1 3412 0 -chrIII 284006 286528 HC_gene_0901_tx_6 1 + 284006 286528 . 2 271,1712 0,811 -chrIII 284006 286528 HC_gene_0901_tx_7 5 + 284006 286528 . 1 2523 0 -chrIII 284501 284890 HC_gene_0901_tx_9 1 + 284501 284890 . 1 390 0 -chrIII 284501 286528 HC_gene_0901_tx_8 1 + 284501 286528 . 1 2028 0 -chrIII 284927 285326 HC_gene_0901_tx_10 1 + 284927 285326 . 1 400 0 -chrIII 284927 286528 HC_gene_0901_tx_11 2 + 284927 286528 . 1 1602 0 -chrIII 285022 286528 HC_gene_0901_tx_12 3 + 285022 286528 . 1 1507 0 -chrIII 285376 286528 HC_gene_0901_tx_13 3 + 285376 286528 . 1 1153 0 -chrIII 285881 286528 HC_gene_0901_tx_14 11 + 285881 286528 . 1 648 0 -chrIII 286244 286528 HC_gene_0901_tx_15 12 + 286244 286528 . 1 285 0 -chrIII 286698 288046 HC_gene_0902_tx_1 6 + 286698 288046 . 1 1349 0 -chrIII 286698 288213 HC_gene_0902_tx_2 27 + 286698 288213 . 1 1516 0 -chrIII 286698 288213 HC_gene_0902_tx_3 1 + 286698 288213 . 2 436,984 0,532 -chrIII 287889 289300 HC_gene_1028_tx_1 1 - 287889 289300 . 1 1412 0 -chrIII 288003 289300 HC_gene_1028_tx_2 1 - 288003 289300 . 1 1298 0 -chrIII 288114 288953 HC_gene_1028_tx_4 7 - 288114 288953 . 1 840 0 -chrIII 288114 289300 HC_gene_1028_tx_3 19 - 288114 289300 . 1 1187 0 -chrIII 289478 290929 HC_gene_0903_tx_1 2 + 289478 290929 . 1 1452 0 -chrIII 289478 291207 HC_gene_0903_tx_2 4 + 289478 291207 . 1 1730 0 -chrIII 289804 290929 HC_gene_0903_tx_3 1 + 289804 290929 . 1 1126 0 -chrIII 289804 291207 HC_gene_0903_tx_4 6 + 289804 291207 . 1 1404 0 -chrIII 291389 291686 HC_gene_0904_tx_1 4 + 291389 291686 . 1 298 0 -chrIII 295489 295889 MC_gene_0905_tx_1 1 + 295489 295889 . 1 401 0 -chrIII 295527 295726 MC_gene_0905_tx_2 1 + 295527 295726 . 1 200 0 -chrIII 296790 298665 HC_gene_1029_tx_1 1 - 296790 298665 . 1 1876 0 -chrIII 296790 299054 HC_gene_1029_tx_2 1 - 296790 299054 . 1 2265 0 -chrIII 298480 299584 LC_gene_0906_tx_1 1 + 298480 299584 . 1 1105 0 -chrIII 299921 300508 MC_gene_1030_tx_1 1 - 299921 300508 . 1 588 0 -chrIII 300193 300727 MC_gene_0907_tx_1 1 + 300193 300727 . 1 535 0 -chrIII 300578 302866 HC_gene_1031_tx_1 1 - 300578 302866 . 1 2289 0 -chrIII 300578 302999 HC_gene_1031_tx_2 6 - 300578 302999 . 1 2422 0 -chrIII 303213 304207 HC_gene_0908_tx_1 3 + 303213 304207 . 1 995 0 -chrIII 304283 305526 MC_gene_1032_tx_1 1 - 304283 305526 . 1 1244 0 -chrIII 305946 308313 LC_gene_0909_tx_1 1 + 305946 308313 . 1 2368 0 -chrIII 308688 309966 HC_gene_1033_tx_1 4 - 308688 309966 . 1 1279 0 -chrIII 309803 310209 HC_gene_0910_tx_1 10 + 309803 310209 . 1 407 0 -chrIII 310144 310679 LC_gene_1034_tx_1 1 - 310144 310679 . 1 536 0 -chrIII 310382 314929 HC_gene_0911_tx_1 1 + 310382 314929 . 1 4548 0 -chrIII 310956 315268 HC_gene_0911_tx_2 1 + 310956 315268 . 1 4313 0 -chrIII 311675 313712 LC_gene_1035_tx_1 1 - 311675 313712 . 1 2038 0 -chrIV 1794 4995 MC_gene_1036_tx_1 1 + 1794 4995 . 1 3202 0 -chrIV 3448 5627 MC_gene_1648_tx_1 1 - 3448 5627 . 2 913,1176 0,1004 -chrIV 7031 8335 LC_gene_1037_tx_1 1 + 7031 8335 . 1 1305 0 -chrIV 8571 10055 LC_gene_1649_tx_1 1 - 8571 10055 . 2 1172,126 0,1359 -chrIV 9919 11333 LC_gene_1038_tx_1 1 + 9919 11333 . 1 1415 0 -chrIV 11746 15155 LC_gene_1039_tx_1 1 + 11746 15155 . 1 3410 0 -chrIV 14309 15732 LC_gene_1650_tx_1 1 - 14309 15732 . 1 1424 0 -chrIV 16195 17340 LC_gene_1040_tx_1 1 + 16195 17340 . 1 1146 0 -chrIV 17466 19274 HC_gene_1651_tx_1 6 - 17466 19274 . 1 1809 0 -chrIV 17466 19904 HC_gene_1651_tx_2 1 - 17466 19904 . 1 2439 0 -chrIV 18980 19274 HC_gene_1651_tx_3 1 - 18980 19274 . 1 295 0 -chrIV 20178 20596 HC_gene_1041_tx_1 23 + 20178 20596 . 1 419 0 -chrIV 20186 20596 HC_gene_1041_tx_2 1 + 20186 20596 . 1 411 0 -chrIV 20294 21032 LC_gene_1652_tx_1 1 - 20294 21032 . 1 739 0 -chrIV 20552 21336 HC_gene_1042_tx_1 1 + 20552 21336 . 1 785 0 -chrIV 20602 21336 HC_gene_1042_tx_2 1 + 20602 21336 . 1 735 0 -chrIV 20604 21099 HC_gene_1042_tx_10 4 + 20604 21099 . 1 496 0 -chrIV 20604 21250 HC_gene_1042_tx_3 49 + 20604 21250 . 1 647 0 -chrIV 20604 21250 HC_gene_1042_tx_4 1 + 20604 21250 . 2 37,445 0,202 -chrIV 20604 21336 HC_gene_1042_tx_5 5 + 20604 21336 . 1 733 0 -chrIV 20604 21398 HC_gene_1042_tx_6 8 + 20604 21398 . 1 795 0 -chrIV 20604 21587 HC_gene_1042_tx_7 1 + 20604 21587 . 1 984 0 -chrIV 20604 21685 HC_gene_1042_tx_8 1 + 20604 21685 . 1 1082 0 -chrIV 20604 21803 HC_gene_1042_tx_9 3 + 20604 21803 . 1 1200 0 -chrIV 21187 21888 MC_gene_1653_tx_1 1 - 21187 21888 . 1 702 0 -chrIV 21315 21685 HC_gene_1042_tx_11 1 + 21315 21685 . 1 371 0 -chrIV 21315 21803 HC_gene_1042_tx_12 2 + 21315 21803 . 1 489 0 -chrIV 21836 22602 MC_gene_1043_tx_1 1 + 21836 22602 . 1 767 0 -chrIV 22650 26115 HC_gene_1044_tx_1 14 + 22650 26115 . 1 3466 0 -chrIV 26357 29879 MC_gene_1654_tx_1 1 - 26357 29879 . 1 3523 0 -chrIV 28830 30476 MC_gene_1655_tx_1 1 - 28830 30476 . 1 1647 0 -chrIV 30638 31905 HC_gene_1045_tx_1 1 + 30638 31905 . 1 1268 0 -chrIV 30638 31906 HC_gene_1045_tx_2 1 + 30638 31906 . 1 1269 0 -chrIV 30638 31908 HC_gene_1045_tx_3 1 + 30638 31908 . 1 1271 0 -chrIV 30638 31909 HC_gene_1045_tx_4 1 + 30638 31909 . 1 1272 0 -chrIV 30638 31910 HC_gene_1045_tx_5 5 + 30638 31910 . 1 1273 0 -chrIV 30638 31910 HC_gene_1045_tx_6 1 + 30638 31910 . 2 776,435 0,838 -chrIV 30638 31912 HC_gene_1045_tx_7 1 + 30638 31912 . 1 1275 0 -chrIV 30638 31939 HC_gene_1045_tx_8 1 + 30638 31939 . 1 1302 0 -chrIV 30638 31941 HC_gene_1045_tx_9 1 + 30638 31941 . 1 1304 0 -chrIV 30638 31942 HC_gene_1045_tx_10 1 + 30638 31942 . 1 1305 0 -chrIV 30638 31943 HC_gene_1045_tx_11 2 + 30638 31943 . 1 1306 0 -chrIV 30638 31952 HC_gene_1045_tx_12 2 + 30638 31952 . 1 1315 0 -chrIV 30638 31967 HC_gene_1045_tx_13 1 + 30638 31967 . 1 1330 0 -chrIV 30638 31968 HC_gene_1045_tx_14 3 + 30638 31968 . 1 1331 0 -chrIV 30638 31969 HC_gene_1045_tx_15 1 + 30638 31969 . 1 1332 0 -chrIV 30638 31977 HC_gene_1045_tx_16 1 + 30638 31977 . 1 1340 0 -chrIV 30638 31979 HC_gene_1045_tx_17 1 + 30638 31979 . 1 1342 0 -chrIV 30638 31983 HC_gene_1045_tx_18 1 + 30638 31983 . 1 1346 0 -chrIV 30638 31984 HC_gene_1045_tx_19 1 + 30638 31984 . 1 1347 0 -chrIV 30638 31989 HC_gene_1045_tx_20 1 + 30638 31989 . 1 1352 0 -chrIV 30638 31990 HC_gene_1045_tx_21 1 + 30638 31990 . 1 1353 0 -chrIV 30638 31992 HC_gene_1045_tx_22 1 + 30638 31992 . 1 1355 0 -chrIV 30638 31995 HC_gene_1045_tx_23 1 + 30638 31995 . 1 1358 0 -chrIV 30638 31997 HC_gene_1045_tx_24 1 + 30638 31997 . 2 398,899 0,461 -chrIV 30638 31998 HC_gene_1045_tx_25 3 + 30638 31998 . 1 1361 0 -chrIV 30638 32000 HC_gene_1045_tx_26 1 + 30638 32000 . 1 1363 0 -chrIV 30638 32003 HC_gene_1045_tx_27 1 + 30638 32003 . 1 1366 0 -chrIV 30638 32004 HC_gene_1045_tx_28 1 + 30638 32004 . 1 1367 0 -chrIV 30638 32005 HC_gene_1045_tx_29 2 + 30638 32005 . 1 1368 0 -chrIV 30638 32010 HC_gene_1045_tx_30 1 + 30638 32010 . 1 1373 0 -chrIV 30638 32013 HC_gene_1045_tx_31 1 + 30638 32013 . 1 1376 0 -chrIV 30638 32014 HC_gene_1045_tx_32 1 + 30638 32014 . 1 1377 0 -chrIV 30638 32020 HC_gene_1045_tx_33 1 + 30638 32020 . 1 1383 0 -chrIV 30638 32023 HC_gene_1045_tx_34 1 + 30638 32023 . 1 1386 0 -chrIV 30638 32029 HC_gene_1045_tx_35 1 + 30638 32029 . 1 1392 0 -chrIV 30638 32033 HC_gene_1045_tx_36 3 + 30638 32033 . 1 1396 0 -chrIV 30638 32035 HC_gene_1045_tx_37 2 + 30638 32035 . 1 1398 0 -chrIV 30638 32046 HC_gene_1045_tx_38 1 + 30638 32046 . 2 138,777 0,632 -chrIV 30638 32050 HC_gene_1045_tx_39 1 + 30638 32050 . 1 1413 0 -chrIV 30638 32057 HC_gene_1045_tx_40 1 + 30638 32057 . 1 1420 0 -chrIV 30638 32059 HC_gene_1045_tx_41 1 + 30638 32059 . 1 1422 0 -chrIV 30638 32063 HC_gene_1045_tx_42 1 + 30638 32063 . 1 1426 0 -chrIV 30638 32069 HC_gene_1045_tx_43 2 + 30638 32069 . 1 1432 0 -chrIV 30638 32091 HC_gene_1045_tx_44 2 + 30638 32091 . 1 1454 0 -chrIV 30638 32096 HC_gene_1045_tx_45 2 + 30638 32096 . 1 1459 0 -chrIV 30638 32102 HC_gene_1045_tx_46 2 + 30638 32102 . 1 1465 0 -chrIV 30638 32110 HC_gene_1045_tx_47 3 + 30638 32110 . 1 1473 0 -chrIV 30638 32112 HC_gene_1045_tx_48 1 + 30638 32112 . 1 1475 0 -chrIV 30638 32113 HC_gene_1045_tx_49 1 + 30638 32113 . 1 1476 0 -chrIV 30638 32120 HC_gene_1045_tx_50 1 + 30638 32120 . 1 1483 0 -chrIV 30638 32123 HC_gene_1045_tx_51 1 + 30638 32123 . 1 1486 0 -chrIV 30638 32127 HC_gene_1045_tx_52 4 + 30638 32127 . 1 1490 0 -chrIV 30731 31909 HC_gene_1045_tx_53 1 + 30731 31909 . 1 1179 0 -chrIV 30731 31952 HC_gene_1045_tx_54 1 + 30731 31952 . 1 1222 0 -chrIV 30731 32089 HC_gene_1045_tx_55 1 + 30731 32089 . 1 1359 0 -chrIV 31309 31910 HC_gene_1045_tx_56 2 + 31309 31910 . 1 602 0 -chrIV 31309 31925 HC_gene_1045_tx_57 1 + 31309 31925 . 1 617 0 -chrIV 31309 31935 HC_gene_1045_tx_58 1 + 31309 31935 . 1 627 0 -chrIV 31309 31956 HC_gene_1045_tx_59 1 + 31309 31956 . 1 648 0 -chrIV 31309 31975 HC_gene_1045_tx_60 1 + 31309 31975 . 1 667 0 -chrIV 31309 31980 HC_gene_1045_tx_61 1 + 31309 31980 . 1 672 0 -chrIV 31309 31988 HC_gene_1045_tx_62 1 + 31309 31988 . 1 680 0 -chrIV 31309 31995 HC_gene_1045_tx_63 1 + 31309 31995 . 1 687 0 -chrIV 31309 32004 HC_gene_1045_tx_64 1 + 31309 32004 . 1 696 0 -chrIV 31309 32031 HC_gene_1045_tx_65 1 + 31309 32031 . 1 723 0 -chrIV 31309 32033 HC_gene_1045_tx_66 1 + 31309 32033 . 1 725 0 -chrIV 31309 32055 HC_gene_1045_tx_67 1 + 31309 32055 . 1 747 0 -chrIV 31309 32091 HC_gene_1045_tx_68 1 + 31309 32091 . 1 783 0 -chrIV 31309 32109 HC_gene_1045_tx_69 1 + 31309 32109 . 1 801 0 -chrIV 31309 32127 HC_gene_1045_tx_70 2 + 31309 32127 . 1 819 0 -chrIV 31802 33211 MC_gene_1656_tx_1 1 - 31802 33211 . 1 1410 0 -chrIV 32234 33369 HC_gene_1046_tx_1 111 + 32234 33369 . 1 1136 0 -chrIV 32234 33369 HC_gene_1046_tx_2 1 + 32234 33369 . 2 107,915 0,221 -chrIV 32234 33369 HC_gene_1046_tx_3 1 + 32234 33369 . 2 477,387 0,749 -chrIV 32234 33369 HC_gene_1046_tx_4 1 + 32234 33369 . 2 764,274 0,862 -chrIV 32234 33369 HC_gene_1046_tx_5 1 + 32234 33369 . 2 1009,41 0,1095 -chrIV 32243 33369 HC_gene_1046_tx_6 1 + 32243 33369 . 1 1127 0 -chrIV 32250 33369 HC_gene_1046_tx_7 2 + 32250 33369 . 1 1120 0 -chrIV 32251 33369 HC_gene_1046_tx_8 1 + 32251 33369 . 1 1119 0 -chrIV 32252 33369 HC_gene_1046_tx_9 1 + 32252 33369 . 1 1118 0 -chrIV 32253 33369 HC_gene_1046_tx_10 2 + 32253 33369 . 1 1117 0 -chrIV 32257 33369 HC_gene_1046_tx_11 1 + 32257 33369 . 1 1113 0 -chrIV 32260 33369 HC_gene_1046_tx_12 1 + 32260 33369 . 1 1110 0 -chrIV 32264 33369 HC_gene_1046_tx_13 4 + 32264 33369 . 1 1106 0 -chrIV 32266 33369 HC_gene_1046_tx_14 2 + 32266 33369 . 1 1104 0 -chrIV 32267 33369 HC_gene_1046_tx_15 2 + 32267 33369 . 1 1103 0 -chrIV 32268 33369 HC_gene_1046_tx_16 6 + 32268 33369 . 1 1102 0 -chrIV 32269 33369 HC_gene_1046_tx_17 1 + 32269 33369 . 1 1101 0 -chrIV 32271 33369 HC_gene_1046_tx_18 1 + 32271 33369 . 1 1099 0 -chrIV 32272 33369 HC_gene_1046_tx_19 5 + 32272 33369 . 1 1098 0 -chrIV 32273 33369 HC_gene_1046_tx_20 1 + 32273 33369 . 1 1097 0 -chrIV 32274 33369 HC_gene_1046_tx_21 1 + 32274 33369 . 1 1096 0 -chrIV 32275 33369 HC_gene_1046_tx_22 1 + 32275 33369 . 1 1095 0 -chrIV 32277 33369 HC_gene_1046_tx_23 1 + 32277 33369 . 1 1093 0 -chrIV 32278 33369 HC_gene_1046_tx_24 1 + 32278 33369 . 1 1092 0 -chrIV 32280 33369 HC_gene_1046_tx_25 2 + 32280 33369 . 1 1090 0 -chrIV 32283 33369 HC_gene_1046_tx_26 1 + 32283 33369 . 1 1087 0 -chrIV 32287 33369 HC_gene_1046_tx_27 1 + 32287 33369 . 1 1083 0 -chrIV 32288 33369 HC_gene_1046_tx_28 2 + 32288 33369 . 1 1082 0 -chrIV 32290 33369 HC_gene_1046_tx_29 3 + 32290 33369 . 1 1080 0 -chrIV 32291 33369 HC_gene_1046_tx_30 1 + 32291 33369 . 1 1079 0 -chrIV 32292 33369 HC_gene_1046_tx_31 1 + 32292 33369 . 1 1078 0 -chrIV 32293 33369 HC_gene_1046_tx_32 1 + 32293 33369 . 1 1077 0 -chrIV 32294 33369 HC_gene_1046_tx_33 10 + 32294 33369 . 1 1076 0 -chrIV 32299 33369 HC_gene_1046_tx_34 1 + 32299 33369 . 1 1071 0 -chrIV 32301 33369 HC_gene_1046_tx_35 3 + 32301 33369 . 1 1069 0 -chrIV 32681 33369 HC_gene_1046_tx_36 8 + 32681 33369 . 1 689 0 -chrIV 32771 33369 HC_gene_1046_tx_37 13 + 32771 33369 . 1 599 0 -chrIV 32902 33369 HC_gene_1046_tx_38 1 + 32902 33369 . 1 468 0 -chrIV 32903 33369 HC_gene_1046_tx_39 22 + 32903 33369 . 1 467 0 -chrIV 32965 33369 HC_gene_1046_tx_40 13 + 32965 33369 . 1 405 0 -chrIV 33095 33369 HC_gene_1046_tx_41 7 + 33095 33369 . 1 275 0 -chrIV 33096 33369 HC_gene_1046_tx_42 2 + 33096 33369 . 1 274 0 -chrIV 33267 34041 HC_gene_1657_tx_1 176 - 33267 34041 . 1 775 0 -chrIV 33406 34070 MC_gene_1047_tx_1 1 + 33406 34070 . 1 665 0 -chrIV 34144 34597 HC_gene_1658_tx_1 5 - 34144 34597 . 1 454 0 -chrIV 34144 35267 HC_gene_1658_tx_2 11 - 34144 35267 . 1 1124 0 -chrIV 34144 36089 HC_gene_1658_tx_3 2 - 34144 36089 . 1 1946 0 -chrIV 34144 36561 HC_gene_1658_tx_4 4 - 34144 36561 . 1 2418 0 -chrIV 36780 38342 HC_gene_1048_tx_1 14 + 36780 38342 . 1 1563 0 -chrIV 37050 38342 HC_gene_1048_tx_2 2 + 37050 38342 . 1 1293 0 -chrIV 38264 38626 MC_gene_1659_tx_1 1 - 38264 38626 . 1 363 0 -chrIV 38467 38886 HC_gene_1049_tx_1 336 + 38467 38886 . 1 420 0 -chrIV 38777 42356 HC_gene_1660_tx_1 9 - 38777 42356 . 1 3580 0 -chrIV 42669 43770 HC_gene_1050_tx_1 38 + 42669 43770 . 1 1102 0 -chrIV 42669 43770 HC_gene_1050_tx_2 1 + 42669 43770 . 2 218,473 0,629 -chrIV 42833 43770 HC_gene_1050_tx_3 5 + 42833 43770 . 1 938 0 -chrIV 43117 43770 HC_gene_1050_tx_4 11 + 43117 43770 . 1 654 0 -chrIV 43258 43770 HC_gene_1050_tx_5 13 + 43258 43770 . 1 513 0 -chrIV 44034 46010 HC_gene_1051_tx_1 1042 + 44034 46010 . 1 1977 0 -chrIV 44284 46010 HC_gene_1051_tx_2 81 + 44284 46010 . 1 1727 0 -chrIV 44365 46010 HC_gene_1051_tx_3 36 + 44365 46010 . 1 1646 0 -chrIV 45043 46010 HC_gene_1051_tx_4 191 + 45043 46010 . 1 968 0 -chrIV 45281 46010 HC_gene_1051_tx_5 526 + 45281 46010 . 1 730 0 -chrIV 45562 46010 HC_gene_1051_tx_6 519 + 45562 46010 . 1 449 0 -chrIV 46197 47280 MC_gene_1661_tx_1 1 - 46197 47280 . 1 1084 0 -chrIV 46197 48071 MC_gene_1661_tx_2 1 - 46197 48071 . 1 1875 0 -chrIV 46963 47469 MC_gene_1661_tx_3 1 - 46963 47469 . 1 507 0 -chrIV 47197 48149 LC_gene_1052_tx_1 1 + 47197 48149 . 1 953 0 -chrIV 48031 50106 MC_gene_1662_tx_1 1 - 48031 50106 . 1 2076 0 -chrIV 49877 50809 HC_gene_1053_tx_1 1 + 49877 50809 . 1 933 0 -chrIV 49877 50930 HC_gene_1053_tx_2 2 + 49877 50930 . 1 1054 0 -chrIV 50428 50809 HC_gene_1053_tx_3 1 + 50428 50809 . 1 382 0 -chrIV 50428 50930 HC_gene_1053_tx_4 6 + 50428 50930 . 1 503 0 -chrIV 50511 50809 HC_gene_1053_tx_6 2 + 50511 50809 . 1 299 0 -chrIV 50511 50930 HC_gene_1053_tx_5 11 + 50511 50930 . 1 420 0 -chrIV 50905 51217 HC_gene_1663_tx_1 31 - 50905 51217 . 1 313 0 -chrIV 50905 51428 HC_gene_1663_tx_2 18 - 50905 51428 . 1 524 0 -chrIV 50905 51536 HC_gene_1663_tx_3 14 - 50905 51536 . 1 632 0 -chrIV 50905 52009 HC_gene_1663_tx_4 23 - 50905 52009 . 1 1105 0 -chrIV 50905 52201 HC_gene_1663_tx_5 120 - 50905 52201 . 1 1297 0 -chrIV 50905 52201 HC_gene_1663_tx_6 1 - 50905 52201 . 2 683,166 0,1131 -chrIV 50905 52201 HC_gene_1663_tx_7 1 - 50905 52201 . 2 502,730 0,567 -chrIV 50905 52201 HC_gene_1663_tx_8 1 - 50905 52201 . 3 480,258,143 0,551,1154 -chrIV 51065 52201 HC_gene_1663_tx_9 1 - 51065 52201 . 1 1137 0 -chrIV 51070 52009 HC_gene_1663_tx_10 1 - 51070 52009 . 1 940 0 -chrIV 51072 52009 HC_gene_1663_tx_11 1 - 51072 52009 . 1 938 0 -chrIV 51072 52201 HC_gene_1663_tx_12 2 - 51072 52201 . 1 1130 0 -chrIV 51073 52201 HC_gene_1663_tx_13 1 - 51073 52201 . 1 1129 0 -chrIV 51074 52201 HC_gene_1663_tx_14 1 - 51074 52201 . 1 1128 0 -chrIV 51075 52201 HC_gene_1663_tx_15 1 - 51075 52201 . 1 1127 0 -chrIV 51076 52201 HC_gene_1663_tx_16 1 - 51076 52201 . 1 1126 0 -chrIV 52394 54186 HC_gene_1054_tx_1 27 + 52394 54186 . 1 1793 0 -chrIV 52394 54186 HC_gene_1054_tx_2 1 + 52394 54186 . 2 917,800 0,993 -chrIV 52394 54362 HC_gene_1054_tx_3 3 + 52394 54362 . 1 1969 0 -chrIV 53322 54186 HC_gene_1054_tx_4 9 + 53322 54186 . 1 865 0 -chrIV 53322 54362 HC_gene_1054_tx_5 1 + 53322 54362 . 2 668,201 0,840 -chrIV 53322 54362 HC_gene_1054_tx_6 2 + 53322 54362 . 1 1041 0 -chrIV 53621 54186 HC_gene_1054_tx_7 15 + 53621 54186 . 1 566 0 -chrIV 54152 56711 HC_gene_1664_tx_1 5 - 54152 56711 . 1 2560 0 -chrIV 54251 56711 HC_gene_1664_tx_2 8 - 54251 56711 . 1 2461 0 -chrIV 56937 57428 MC_gene_1665_tx_1 1 - 56937 57428 . 1 492 0 -chrIV 56939 60463 MC_gene_1665_tx_2 1 - 56939 60463 . 1 3525 0 -chrIV 56942 59934 MC_gene_1665_tx_3 1 - 56942 59934 . 1 2993 0 -chrIV 56944 57294 MC_gene_1665_tx_7 1 - 56944 57294 . 1 351 0 -chrIV 56958 60571 MC_gene_1665_tx_4 1 - 56958 60571 . 1 3614 0 -chrIV 56976 60725 MC_gene_1665_tx_5 1 - 56976 60725 . 2 3330,334 0,3416 -chrIV 56977 60208 MC_gene_1665_tx_6 1 - 56977 60208 . 1 3232 0 -chrIV 57046 57836 MC_gene_1055_tx_1 1 + 57046 57836 . 1 791 0 -chrIV 59132 60580 HC_gene_1056_tx_1 2 + 59132 60580 . 1 1449 0 -chrIV 59132 60580 HC_gene_1056_tx_2 1 + 59132 60580 . 2 811,497 0,952 -chrIV 60482 60917 MC_gene_1666_tx_1 1 - 60482 60917 . 1 436 0 -chrIV 60495 61257 MC_gene_1667_tx_1 1 - 60495 61257 . 1 763 0 -chrIV 60525 61060 MC_gene_1667_tx_2 1 - 60525 61060 . 1 536 0 -chrIV 60562 61893 MC_gene_1668_tx_1 1 - 60562 61893 . 1 1332 0 -chrIV 61155 63882 MC_gene_1057_tx_1 1 + 61155 63882 . 1 2728 0 -chrIV 61789 65039 MC_gene_1669_tx_1 1 - 61789 65039 . 1 3251 0 -chrIV 61796 62129 MC_gene_1669_tx_2 1 - 61796 62129 . 1 334 0 -chrIV 61862 63980 MC_gene_1669_tx_3 1 - 61862 63980 . 1 2119 0 -chrIV 62560 63275 MC_gene_1057_tx_2 1 + 62560 63275 . 1 716 0 -chrIV 65226 65834 HC_gene_1058_tx_1 56 + 65226 65834 . 2 81,457 0,152 -chrIV 65226 65834 HC_gene_1058_tx_2 1 + 65226 65834 . 2 85,457 0,152 -chrIV 65226 66037 HC_gene_1058_tx_3 1 + 65226 66037 . 2 81,660 0,152 -chrIV 65226 66039 HC_gene_1058_tx_4 1 + 65226 66039 . 2 81,662 0,152 -chrIV 65226 66044 HC_gene_1058_tx_5 5 + 65226 66044 . 2 81,667 0,152 -chrIV 65226 66045 HC_gene_1058_tx_6 11 + 65226 66045 . 2 81,668 0,152 -chrIV 65226 66045 HC_gene_1058_tx_7 1 + 65226 66045 . 2 81,642 0,178 -chrIV 65226 66045 HC_gene_1058_tx_8 1 + 65226 66045 . 1 820 0 -chrIV 65226 66046 HC_gene_1058_tx_9 1 + 65226 66046 . 2 81,669 0,152 -chrIV 65226 66047 HC_gene_1058_tx_10 4 + 65226 66047 . 2 81,670 0,152 -chrIV 65226 66050 HC_gene_1058_tx_11 4 + 65226 66050 . 2 81,673 0,152 -chrIV 65226 66051 HC_gene_1058_tx_12 5 + 65226 66051 . 2 81,674 0,152 -chrIV 65226 66051 HC_gene_1058_tx_13 1 + 65226 66051 . 1 826 0 -chrIV 65226 66052 HC_gene_1058_tx_14 1 + 65226 66052 . 2 85,675 0,152 -chrIV 65226 66052 HC_gene_1058_tx_15 6 + 65226 66052 . 2 81,675 0,152 -chrIV 65226 66060 HC_gene_1058_tx_16 3 + 65226 66060 . 2 81,683 0,152 -chrIV 65466 65958 MC_gene_1670_tx_1 1 - 65466 65958 . 1 493 0 -chrIV 65965 68771 HC_gene_1671_tx_1 1 - 65965 68771 . 1 2807 0 -chrIV 66028 67656 MC_gene_1059_tx_1 1 + 66028 67656 . 1 1629 0 -chrIV 67539 68771 HC_gene_1671_tx_2 41 - 67539 68771 . 1 1233 0 -chrIV 67876 68771 HC_gene_1671_tx_3 1 - 67876 68771 . 1 896 0 -chrIV 67878 68771 HC_gene_1671_tx_4 1 - 67878 68771 . 1 894 0 -chrIV 67884 68771 HC_gene_1671_tx_5 1 - 67884 68771 . 1 888 0 -chrIV 67898 68771 HC_gene_1671_tx_6 1 - 67898 68771 . 1 874 0 -chrIV 67902 68771 HC_gene_1671_tx_7 1 - 67902 68771 . 1 870 0 -chrIV 67912 68771 HC_gene_1671_tx_8 1 - 67912 68771 . 1 860 0 -chrIV 67914 68771 HC_gene_1671_tx_9 1 - 67914 68771 . 1 858 0 -chrIV 67932 68771 HC_gene_1671_tx_10 1 - 67932 68771 . 1 840 0 -chrIV 67934 68771 HC_gene_1671_tx_11 1 - 67934 68771 . 1 838 0 -chrIV 67942 68771 HC_gene_1671_tx_12 1 - 67942 68771 . 1 830 0 -chrIV 67958 68771 HC_gene_1671_tx_13 1 - 67958 68771 . 1 814 0 -chrIV 67974 68771 HC_gene_1671_tx_14 2 - 67974 68771 . 1 798 0 -chrIV 68864 69354 HC_gene_1672_tx_1 3 - 68864 69354 . 1 491 0 -chrIV 68864 70329 HC_gene_1672_tx_2 4 - 68864 70329 . 1 1466 0 -chrIV 69005 70564 LC_gene_1060_tx_1 1 + 69005 70564 . 1 1560 0 -chrIV 70486 73239 HC_gene_1673_tx_1 3 - 70486 73239 . 1 2754 0 -chrIV 70486 73361 HC_gene_1673_tx_2 12 - 70486 73361 . 1 2876 0 -chrIV 70486 74035 HC_gene_1673_tx_3 1 - 70486 74035 . 2 838,2644 0,906 -chrIV 70486 74035 HC_gene_1673_tx_4 7 - 70486 74035 . 1 3550 0 -chrIV 73586 74065 HC_gene_1061_tx_1 7 + 73586 74065 . 1 480 0 -chrIV 74328 74817 LC_gene_1674_tx_1 1 - 74328 74817 . 1 490 0 -chrIV 74408 76724 MC_gene_1062_tx_1 1 + 74408 76724 . 1 2317 0 -chrIV 74612 77423 MC_gene_1063_tx_1 1 + 74612 77423 . 1 2812 0 -chrIV 76637 76903 MC_gene_1675_tx_1 1 - 76637 76903 . 1 267 0 -chrIV 77149 77986 HC_gene_1676_tx_1 1 - 77149 77986 . 1 838 0 -chrIV 77157 77495 HC_gene_1676_tx_96 1 - 77157 77495 . 1 339 0 -chrIV 77157 77986 HC_gene_1676_tx_2 1 - 77157 77986 . 1 830 0 -chrIV 77164 77495 HC_gene_1676_tx_97 3 - 77164 77495 . 1 332 0 -chrIV 77164 77629 HC_gene_1676_tx_3 4 - 77164 77629 . 1 466 0 -chrIV 77164 77743 HC_gene_1676_tx_4 2 - 77164 77743 . 1 580 0 -chrIV 77164 77848 HC_gene_1676_tx_5 2 - 77164 77848 . 1 685 0 -chrIV 77164 77986 HC_gene_1676_tx_6 7 - 77164 77986 . 1 823 0 -chrIV 77165 77743 HC_gene_1676_tx_7 2 - 77165 77743 . 1 579 0 -chrIV 77165 77986 HC_gene_1676_tx_8 3 - 77165 77986 . 1 822 0 -chrIV 77168 77986 HC_gene_1676_tx_9 2 - 77168 77986 . 1 819 0 -chrIV 77170 77495 HC_gene_1676_tx_98 1 - 77170 77495 . 1 326 0 -chrIV 77170 77986 HC_gene_1676_tx_10 2 - 77170 77986 . 1 817 0 -chrIV 77171 77495 HC_gene_1676_tx_99 1 - 77171 77495 . 1 325 0 -chrIV 77171 77986 HC_gene_1676_tx_11 1 - 77171 77986 . 2 43,723 0,93 -chrIV 77171 77986 HC_gene_1676_tx_12 2 - 77171 77986 . 1 816 0 -chrIV 77172 77629 HC_gene_1676_tx_13 1 - 77172 77629 . 1 458 0 -chrIV 77172 77848 HC_gene_1676_tx_14 1 - 77172 77848 . 1 677 0 -chrIV 77172 77986 HC_gene_1676_tx_15 3 - 77172 77986 . 1 815 0 -chrIV 77173 77986 HC_gene_1676_tx_16 4 - 77173 77986 . 1 814 0 -chrIV 77174 77495 HC_gene_1676_tx_100 2 - 77174 77495 . 1 322 0 -chrIV 77174 77848 HC_gene_1676_tx_17 1 - 77174 77848 . 1 675 0 -chrIV 77174 77986 HC_gene_1676_tx_18 7 - 77174 77986 . 1 813 0 -chrIV 77175 77495 HC_gene_1676_tx_101 1 - 77175 77495 . 1 321 0 -chrIV 77175 77629 HC_gene_1676_tx_19 1 - 77175 77629 . 1 455 0 -chrIV 77175 77986 HC_gene_1676_tx_20 3 - 77175 77986 . 1 812 0 -chrIV 77179 77629 HC_gene_1676_tx_21 1 - 77179 77629 . 1 451 0 -chrIV 77182 77743 HC_gene_1676_tx_22 1 - 77182 77743 . 1 562 0 -chrIV 77188 77629 HC_gene_1676_tx_23 1 - 77188 77629 . 1 442 0 -chrIV 77190 77986 HC_gene_1676_tx_24 1 - 77190 77986 . 1 797 0 -chrIV 77192 77986 HC_gene_1676_tx_25 2 - 77192 77986 . 1 795 0 -chrIV 77195 77495 HC_gene_1676_tx_102 1 - 77195 77495 . 1 301 0 -chrIV 77195 77986 HC_gene_1676_tx_26 1 - 77195 77986 . 1 792 0 -chrIV 77195 78251 HC_gene_1677_tx_1 1 - 77195 78251 . 1 1057 0 -chrIV 77196 77495 HC_gene_1676_tx_103 1 - 77196 77495 . 1 300 0 -chrIV 77196 77629 HC_gene_1676_tx_27 1 - 77196 77629 . 1 434 0 -chrIV 77196 77743 HC_gene_1676_tx_28 1 - 77196 77743 . 1 548 0 -chrIV 77196 77848 HC_gene_1676_tx_29 1 - 77196 77848 . 1 653 0 -chrIV 77196 77986 HC_gene_1676_tx_30 5 - 77196 77986 . 1 791 0 -chrIV 77197 77743 HC_gene_1676_tx_31 1 - 77197 77743 . 1 547 0 -chrIV 77199 77986 HC_gene_1676_tx_32 1 - 77199 77986 . 1 788 0 -chrIV 77205 77743 HC_gene_1676_tx_33 1 - 77205 77743 . 1 539 0 -chrIV 77205 77986 HC_gene_1676_tx_34 4 - 77205 77986 . 1 782 0 -chrIV 77205 78251 HC_gene_1677_tx_2 1 - 77205 78251 . 1 1047 0 -chrIV 77209 77495 HC_gene_1676_tx_104 1 - 77209 77495 . 1 287 0 -chrIV 77210 77743 HC_gene_1676_tx_35 2 - 77210 77743 . 1 534 0 -chrIV 77210 77848 HC_gene_1676_tx_36 1 - 77210 77848 . 1 639 0 -chrIV 77210 77986 HC_gene_1676_tx_37 4 - 77210 77986 . 1 777 0 -chrIV 77211 77986 HC_gene_1676_tx_38 1 - 77211 77986 . 1 776 0 -chrIV 77212 77495 HC_gene_1676_tx_105 2 - 77212 77495 . 1 284 0 -chrIV 77212 77743 HC_gene_1676_tx_39 1 - 77212 77743 . 1 532 0 -chrIV 77212 77848 HC_gene_1676_tx_40 3 - 77212 77848 . 1 637 0 -chrIV 77212 77986 HC_gene_1676_tx_41 10 - 77212 77986 . 1 775 0 -chrIV 77212 78251 HC_gene_1677_tx_3 1 - 77212 78251 . 1 1040 0 -chrIV 77215 77629 HC_gene_1676_tx_42 1 - 77215 77629 . 1 415 0 -chrIV 77217 77495 HC_gene_1676_tx_106 2 - 77217 77495 . 1 279 0 -chrIV 77217 77848 HC_gene_1676_tx_43 1 - 77217 77848 . 1 632 0 -chrIV 77217 77986 HC_gene_1676_tx_44 1 - 77217 77986 . 1 770 0 -chrIV 77218 77986 HC_gene_1676_tx_45 3 - 77218 77986 . 1 769 0 -chrIV 77219 77848 HC_gene_1676_tx_46 1 - 77219 77848 . 1 630 0 -chrIV 77219 77986 HC_gene_1676_tx_47 4 - 77219 77986 . 1 768 0 -chrIV 77220 77495 HC_gene_1676_tx_107 1 - 77220 77495 . 1 276 0 -chrIV 77220 77743 HC_gene_1676_tx_48 2 - 77220 77743 . 1 524 0 -chrIV 77220 77848 HC_gene_1676_tx_49 1 - 77220 77848 . 1 629 0 -chrIV 77220 77986 HC_gene_1676_tx_50 3 - 77220 77986 . 1 767 0 -chrIV 77221 77495 HC_gene_1676_tx_108 3 - 77221 77495 . 1 275 0 -chrIV 77221 77629 HC_gene_1676_tx_51 1 - 77221 77629 . 1 409 0 -chrIV 77221 77743 HC_gene_1676_tx_52 3 - 77221 77743 . 1 523 0 -chrIV 77221 77848 HC_gene_1676_tx_53 3 - 77221 77848 . 1 628 0 -chrIV 77221 77986 HC_gene_1676_tx_54 5 - 77221 77986 . 1 766 0 -chrIV 77222 77495 HC_gene_1676_tx_109 1 - 77222 77495 . 1 274 0 -chrIV 77222 77743 HC_gene_1676_tx_55 3 - 77222 77743 . 1 522 0 -chrIV 77222 77848 HC_gene_1676_tx_56 3 - 77222 77848 . 1 627 0 -chrIV 77222 77986 HC_gene_1676_tx_57 5 - 77222 77986 . 1 765 0 -chrIV 77222 78251 HC_gene_1677_tx_4 2 - 77222 78251 . 1 1030 0 -chrIV 77224 77495 HC_gene_1676_tx_110 3 - 77224 77495 . 1 272 0 -chrIV 77224 77629 HC_gene_1676_tx_58 2 - 77224 77629 . 1 406 0 -chrIV 77224 77743 HC_gene_1676_tx_59 3 - 77224 77743 . 1 520 0 -chrIV 77224 77848 HC_gene_1676_tx_60 2 - 77224 77848 . 1 625 0 -chrIV 77224 77986 HC_gene_1676_tx_61 17 - 77224 77986 . 1 763 0 -chrIV 77224 78251 HC_gene_1677_tx_5 3 - 77224 78251 . 1 1028 0 -chrIV 77225 77629 HC_gene_1676_tx_62 3 - 77225 77629 . 1 405 0 -chrIV 77225 77848 HC_gene_1676_tx_63 4 - 77225 77848 . 1 624 0 -chrIV 77225 77986 HC_gene_1676_tx_64 10 - 77225 77986 . 1 762 0 -chrIV 77225 78251 HC_gene_1677_tx_6 1 - 77225 78251 . 1 1027 0 -chrIV 77226 77495 HC_gene_1676_tx_111 2 - 77226 77495 . 1 270 0 -chrIV 77226 77629 HC_gene_1676_tx_65 4 - 77226 77629 . 1 404 0 -chrIV 77226 77743 HC_gene_1676_tx_66 2 - 77226 77743 . 1 518 0 -chrIV 77226 77986 HC_gene_1676_tx_67 2 - 77226 77986 . 1 761 0 -chrIV 77227 77986 HC_gene_1676_tx_68 1 - 77227 77986 . 1 760 0 -chrIV 77228 77986 HC_gene_1676_tx_69 1 - 77228 77986 . 1 759 0 -chrIV 77229 77495 HC_gene_1676_tx_112 1 - 77229 77495 . 1 267 0 -chrIV 77229 77986 HC_gene_1676_tx_70 1 - 77229 77986 . 1 758 0 -chrIV 77232 77495 HC_gene_1676_tx_113 1 - 77232 77495 . 1 264 0 -chrIV 77232 77986 HC_gene_1676_tx_71 11 - 77232 77986 . 1 755 0 -chrIV 77233 77495 HC_gene_1676_tx_114 1 - 77233 77495 . 1 263 0 -chrIV 77233 77743 HC_gene_1676_tx_72 1 - 77233 77743 . 1 511 0 -chrIV 77233 77848 HC_gene_1676_tx_73 1 - 77233 77848 . 1 616 0 -chrIV 77233 77986 HC_gene_1676_tx_74 12 - 77233 77986 . 1 754 0 -chrIV 77234 77848 HC_gene_1676_tx_75 1 - 77234 77848 . 1 615 0 -chrIV 77236 77629 HC_gene_1676_tx_76 1 - 77236 77629 . 1 394 0 -chrIV 77237 77495 HC_gene_1676_tx_115 3 - 77237 77495 . 1 259 0 -chrIV 77237 77629 HC_gene_1676_tx_77 1 - 77237 77629 . 1 393 0 -chrIV 77237 77743 HC_gene_1676_tx_78 2 - 77237 77743 . 1 507 0 -chrIV 77237 77986 HC_gene_1676_tx_79 9 - 77237 77986 . 1 750 0 -chrIV 77239 77986 HC_gene_1676_tx_80 2 - 77239 77986 . 1 748 0 -chrIV 77240 77848 HC_gene_1676_tx_81 1 - 77240 77848 . 1 609 0 -chrIV 77240 77986 HC_gene_1676_tx_82 1 - 77240 77986 . 1 747 0 -chrIV 77242 77495 HC_gene_1676_tx_116 2 - 77242 77495 . 1 254 0 -chrIV 77242 77629 HC_gene_1676_tx_83 1 - 77242 77629 . 1 388 0 -chrIV 77242 77848 HC_gene_1676_tx_84 2 - 77242 77848 . 1 607 0 -chrIV 77242 77986 HC_gene_1676_tx_85 2 - 77242 77986 . 1 745 0 -chrIV 77242 78251 HC_gene_1677_tx_7 2 - 77242 78251 . 1 1010 0 -chrIV 77243 77495 HC_gene_1676_tx_117 1 - 77243 77495 . 1 253 0 -chrIV 77243 77848 HC_gene_1676_tx_86 1 - 77243 77848 . 1 606 0 -chrIV 77243 77986 HC_gene_1676_tx_87 5 - 77243 77986 . 1 744 0 -chrIV 77244 77495 HC_gene_1676_tx_118 1 - 77244 77495 . 1 252 0 -chrIV 77244 77848 HC_gene_1676_tx_88 1 - 77244 77848 . 1 605 0 -chrIV 77244 77986 HC_gene_1676_tx_89 2 - 77244 77986 . 1 743 0 -chrIV 77249 77629 HC_gene_1676_tx_90 1 - 77249 77629 . 1 381 0 -chrIV 77249 77986 HC_gene_1676_tx_91 1 - 77249 77986 . 1 738 0 -chrIV 77250 77848 HC_gene_1676_tx_92 1 - 77250 77848 . 1 599 0 -chrIV 77250 77986 HC_gene_1676_tx_93 12 - 77250 77986 . 1 737 0 -chrIV 77250 78200 HC_gene_1677_tx_8 1 - 77250 78200 . 1 951 0 -chrIV 77250 78251 HC_gene_1677_tx_9 1 - 77250 78251 . 1 1002 0 -chrIV 77252 77848 HC_gene_1676_tx_94 1 - 77252 77848 . 1 597 0 -chrIV 77252 78251 HC_gene_1677_tx_10 1 - 77252 78251 . 1 1000 0 -chrIV 77254 77743 HC_gene_1676_tx_95 1 - 77254 77743 . 1 490 0 -chrIV 78403 79203 HC_gene_1064_tx_1 243 + 78403 79203 . 1 801 0 -chrIV 78723 79203 HC_gene_1064_tx_2 96 + 78723 79203 . 1 481 0 -chrIV 78799 79203 HC_gene_1064_tx_3 44 + 78799 79203 . 1 405 0 -chrIV 79137 80390 HC_gene_1678_tx_1 1 - 79137 80390 . 2 324,372 0,882 -chrIV 79137 80492 HC_gene_1678_tx_2 5 - 79137 80492 . 1 1356 0 -chrIV 80697 83389 HC_gene_1065_tx_1 2 + 80697 83389 . 1 2693 0 -chrIV 84093 85943 MC_gene_1679_tx_1 1 - 84093 85943 . 1 1851 0 -chrIV 84163 85305 MC_gene_1679_tx_2 1 - 84163 85305 . 2 731,76 0,1067 -chrIV 85634 86081 HC_gene_1066_tx_1 4 + 85634 86081 . 1 448 0 -chrIV 85934 87249 MC_gene_1680_tx_1 1 - 85934 87249 . 1 1316 0 -chrIV 87481 88044 HC_gene_1067_tx_1 84 + 87481 88044 . 1 564 0 -chrIV 87481 88122 HC_gene_1067_tx_2 684 + 87481 88122 . 1 642 0 -chrIV 87729 88044 HC_gene_1067_tx_3 9 + 87729 88044 . 1 316 0 -chrIV 87729 88122 HC_gene_1067_tx_4 98 + 87729 88122 . 1 394 0 -chrIV 88209 89945 HC_gene_1068_tx_1 23 + 88209 89945 . 1 1737 0 -chrIV 88209 89945 HC_gene_1068_tx_2 1 + 88209 89945 . 2 1277,398 0,1339 -chrIV 88209 89945 HC_gene_1068_tx_3 1 + 88209 89945 . 2 884,748 0,989 -chrIV 88785 89945 HC_gene_1068_tx_4 14 + 88785 89945 . 1 1161 0 -chrIV 88785 89945 HC_gene_1068_tx_5 1 + 88785 89945 . 2 352,711 0,450 -chrIV 90026 92491 HC_gene_1069_tx_1 3 + 90026 92491 . 1 2466 0 -chrIV 90026 92491 HC_gene_1069_tx_2 1 + 90026 92491 . 2 1024,868 0,1598 -chrIV 92465 92998 HC_gene_1681_tx_1 23 - 92465 92998 . 1 534 0 -chrIV 92465 93358 HC_gene_1681_tx_2 6 - 92465 93358 . 1 894 0 -chrIV 92465 93358 HC_gene_1681_tx_3 1 - 92465 93358 . 2 410,128 0,766 -chrIV 92465 93716 HC_gene_1681_tx_4 4 - 92465 93716 . 1 1252 0 -chrIV 92465 93952 HC_gene_1681_tx_5 44 - 92465 93952 . 1 1488 0 -chrIV 92465 93952 HC_gene_1681_tx_6 1 - 92465 93952 . 2 508,222 0,1266 -chrIV 92465 93952 HC_gene_1681_tx_7 1 - 92465 93952 . 2 498,431 0,1057 -chrIV 94106 94582 HC_gene_1070_tx_1 9 + 94106 94582 . 1 477 0 -chrIV 94186 94582 HC_gene_1070_tx_2 2 + 94186 94582 . 1 397 0 -chrIV 94598 95966 HC_gene_1071_tx_1 1 + 94598 95966 . 1 1369 0 -chrIV 94697 95966 HC_gene_1071_tx_2 3 + 94697 95966 . 1 1270 0 -chrIV 94859 95966 HC_gene_1071_tx_3 3 + 94859 95966 . 1 1108 0 -chrIV 94920 95966 HC_gene_1071_tx_4 1 + 94920 95966 . 1 1047 0 -chrIV 94920 95966 HC_gene_1071_tx_5 1 + 94920 95966 . 2 952,46 0,1001 -chrIV 95173 95966 HC_gene_1071_tx_6 4 + 95173 95966 . 1 794 0 -chrIV 95385 95966 HC_gene_1071_tx_7 7 + 95385 95966 . 1 582 0 -chrIV 95476 95966 HC_gene_1071_tx_8 1 + 95476 95966 . 1 491 0 -chrIV 95602 95966 HC_gene_1071_tx_9 4 + 95602 95966 . 1 365 0 -chrIV 95772 98131 HC_gene_1682_tx_1 19 - 95772 98131 . 1 2360 0 -chrIV 98430 99371 HC_gene_1072_tx_1 69 + 98430 99371 . 1 942 0 -chrIV 98430 99371 HC_gene_1072_tx_2 1 + 98430 99371 . 2 88,646 0,296 -chrIV 98430 99445 HC_gene_1072_tx_3 5 + 98430 99445 . 1 1016 0 -chrIV 99222 100907 HC_gene_1683_tx_1 1 - 99222 100907 . 3 721,172,569 0,778,1117 -chrIV 99222 101072 HC_gene_1683_tx_2 1 - 99222 101072 . 1 1851 0 -chrIV 99527 100506 HC_gene_1073_tx_1 113 + 99527 100506 . 1 980 0 -chrIV 100430 100907 HC_gene_1683_tx_3 7 - 100430 100907 . 1 478 0 -chrIV 100430 101072 HC_gene_1683_tx_5 62 - 100430 101072 . 1 643 0 -chrIV 100430 101072 HC_gene_1683_tx_6 1 - 100430 101072 . 2 471,97 0,546 -chrIV 100509 100907 HC_gene_1683_tx_4 3 - 100509 100907 . 1 399 0 -chrIV 100509 101072 HC_gene_1683_tx_7 5 - 100509 101072 . 1 564 0 -chrIV 101165 103423 HC_gene_1684_tx_1 4 - 101165 103423 . 1 2259 0 -chrIV 101662 103563 LC_gene_1074_tx_1 1 + 101662 103563 . 1 1902 0 -chrIV 103389 104574 HC_gene_1685_tx_1 1 - 103389 104574 . 1 1186 0 -chrIV 103389 104591 HC_gene_1685_tx_2 1 - 103389 104591 . 1 1203 0 -chrIV 103389 104669 HC_gene_1685_tx_3 13 - 103389 104669 . 1 1281 0 -chrIV 103389 104669 HC_gene_1685_tx_4 1 - 103389 104669 . 2 851,206 0,1075 -chrIV 103525 104591 HC_gene_1685_tx_5 39 - 103525 104591 . 1 1067 0 -chrIV 103525 104669 HC_gene_1685_tx_6 319 - 103525 104669 . 1 1145 0 -chrIV 103525 104669 HC_gene_1685_tx_7 1 - 103525 104669 . 2 826,275 0,870 -chrIV 103525 104669 HC_gene_1685_tx_8 1 - 103525 104669 . 2 796,206 0,939 -chrIV 103525 104669 HC_gene_1685_tx_9 1 - 103525 104669 . 2 488,208 0,937 -chrIV 103616 104756 HC_gene_1075_tx_1 1 + 103616 104756 . 1 1141 0 -chrIV 104822 106508 HC_gene_1686_tx_1 2 - 104822 106508 . 1 1687 0 -chrIV 104822 106831 HC_gene_1686_tx_2 6 - 104822 106831 . 1 2010 0 -chrIV 104835 105112 MC_gene_1076_tx_1 1 + 104835 105112 . 1 278 0 -chrIV 107078 111173 HC_gene_1077_tx_1 13 + 107078 111173 . 1 4096 0 -chrIV 107078 111173 HC_gene_1077_tx_2 1 + 107078 111173 . 2 863,2852 0,1244 -chrIV 107078 111173 HC_gene_1077_tx_3 1 + 107078 111173 . 2 499,3489 0,607 -chrIV 107078 111173 HC_gene_1077_tx_4 1 + 107078 111173 . 2 2317,1435 0,2661 -chrIV 107078 111173 HC_gene_1077_tx_5 1 + 107078 111173 . 2 693,2222 0,1874 -chrIV 107078 111173 HC_gene_1077_tx_6 1 + 107078 111173 . 2 3811,178 0,3918 -chrIV 107078 111173 HC_gene_1077_tx_7 1 + 107078 111173 . 2 2153,1787 0,2309 -chrIV 107078 111173 HC_gene_1077_tx_8 1 + 107078 111173 . 2 1453,2513 0,1583 -chrIV 107772 111173 HC_gene_1077_tx_9 1 + 107772 111173 . 1 3402 0 -chrIV 108712 111173 HC_gene_1077_tx_10 4 + 108712 111173 . 1 2462 0 -chrIV 108946 111173 HC_gene_1077_tx_11 6 + 108946 111173 . 1 2228 0 -chrIV 108946 111173 HC_gene_1077_tx_12 1 + 108946 111173 . 2 413,827 0,1401 -chrIV 109122 111173 HC_gene_1077_tx_13 3 + 109122 111173 . 1 2052 0 -chrIV 109122 111173 HC_gene_1077_tx_14 1 + 109122 111173 . 2 1202,496 0,1556 -chrIV 109122 111173 HC_gene_1077_tx_15 1 + 109122 111173 . 2 857,888 0,1164 -chrIV 109122 111173 HC_gene_1077_tx_16 1 + 109122 111173 . 2 742,1118 0,934 -chrIV 109403 111173 HC_gene_1077_tx_17 1 + 109403 111173 . 2 872,839 0,932 -chrIV 109403 111173 HC_gene_1077_tx_18 6 + 109403 111173 . 1 1771 0 -chrIV 109403 111173 HC_gene_1077_tx_19 1 + 109403 111173 . 2 114,1182 0,589 -chrIV 109605 111173 HC_gene_1077_tx_20 13 + 109605 111173 . 1 1569 0 -chrIV 109875 111173 HC_gene_1077_tx_21 9 + 109875 111173 . 1 1299 0 -chrIV 109875 111173 HC_gene_1077_tx_22 1 + 109875 111173 . 2 145,923 0,376 -chrIV 110022 111173 HC_gene_1077_tx_23 20 + 110022 111173 . 1 1152 0 -chrIV 110211 111173 HC_gene_1077_tx_24 38 + 110211 111173 . 1 963 0 -chrIV 110291 111173 HC_gene_1077_tx_25 10 + 110291 111173 . 1 883 0 -chrIV 110371 111173 HC_gene_1077_tx_26 1 + 110371 111173 . 2 123,621 0,182 -chrIV 110371 111173 HC_gene_1077_tx_27 69 + 110371 111173 . 1 803 0 -chrIV 110595 111173 HC_gene_1077_tx_28 69 + 110595 111173 . 1 579 0 -chrIV 111371 114288 HC_gene_1078_tx_1 4 + 111371 114288 . 1 2918 0 -chrIV 114564 116004 HC_gene_1079_tx_1 52 + 114564 116004 . 1 1441 0 -chrIV 114564 116004 HC_gene_1079_tx_2 1 + 114564 116004 . 2 759,630 0,811 -chrIV 114807 116004 HC_gene_1079_tx_3 2 + 114807 116004 . 1 1198 0 -chrIV 115776 116100 HC_gene_1687_tx_1 1 - 115776 116100 . 1 325 0 -chrIV 116277 116924 HC_gene_1080_tx_1 106 + 116277 116924 . 1 648 0 -chrIV 116277 116925 HC_gene_1080_tx_2 1 + 116277 116925 . 1 649 0 -chrIV 116277 116926 HC_gene_1080_tx_3 2 + 116277 116926 . 1 650 0 -chrIV 116277 116927 HC_gene_1080_tx_4 50 + 116277 116927 . 1 651 0 -chrIV 116277 116928 HC_gene_1080_tx_5 11 + 116277 116928 . 1 652 0 -chrIV 116277 116929 HC_gene_1080_tx_6 6 + 116277 116929 . 1 653 0 -chrIV 116277 116930 HC_gene_1080_tx_7 14 + 116277 116930 . 1 654 0 -chrIV 116277 116931 HC_gene_1080_tx_8 3 + 116277 116931 . 1 655 0 -chrIV 116277 116932 HC_gene_1080_tx_9 55 + 116277 116932 . 1 656 0 -chrIV 116277 116933 HC_gene_1080_tx_10 1 + 116277 116933 . 1 657 0 -chrIV 116277 116934 HC_gene_1080_tx_11 4 + 116277 116934 . 1 658 0 -chrIV 116277 116939 HC_gene_1080_tx_12 5 + 116277 116939 . 1 663 0 -chrIV 116277 116940 HC_gene_1080_tx_13 15 + 116277 116940 . 1 664 0 -chrIV 116277 116941 HC_gene_1080_tx_14 2 + 116277 116941 . 1 665 0 -chrIV 116277 116942 HC_gene_1080_tx_15 7 + 116277 116942 . 1 666 0 -chrIV 116277 116943 HC_gene_1080_tx_16 1 + 116277 116943 . 1 667 0 -chrIV 116277 116944 HC_gene_1080_tx_17 1 + 116277 116944 . 1 668 0 -chrIV 116277 116946 HC_gene_1080_tx_18 2 + 116277 116946 . 1 670 0 -chrIV 116277 116947 HC_gene_1080_tx_19 9 + 116277 116947 . 1 671 0 -chrIV 116277 116948 HC_gene_1080_tx_20 2 + 116277 116948 . 1 672 0 -chrIV 116277 116950 HC_gene_1080_tx_21 2 + 116277 116950 . 1 674 0 -chrIV 116277 116951 HC_gene_1080_tx_22 3 + 116277 116951 . 1 675 0 -chrIV 116277 116952 HC_gene_1080_tx_23 1 + 116277 116952 . 1 676 0 -chrIV 116277 116955 HC_gene_1080_tx_24 1 + 116277 116955 . 1 679 0 -chrIV 116277 116956 HC_gene_1080_tx_25 1 + 116277 116956 . 1 680 0 -chrIV 116277 116957 HC_gene_1080_tx_26 1 + 116277 116957 . 1 681 0 -chrIV 116277 116958 HC_gene_1080_tx_27 6 + 116277 116958 . 1 682 0 -chrIV 116277 116959 HC_gene_1080_tx_28 2 + 116277 116959 . 1 683 0 -chrIV 116277 116960 HC_gene_1080_tx_29 1 + 116277 116960 . 1 684 0 -chrIV 116277 116961 HC_gene_1080_tx_30 8 + 116277 116961 . 1 685 0 -chrIV 116277 116962 HC_gene_1080_tx_31 13 + 116277 116962 . 1 686 0 -chrIV 116277 116963 HC_gene_1080_tx_32 10 + 116277 116963 . 1 687 0 -chrIV 116277 116964 HC_gene_1080_tx_33 2 + 116277 116964 . 1 688 0 -chrIV 116277 116965 HC_gene_1080_tx_34 1 + 116277 116965 . 1 689 0 -chrIV 116277 116966 HC_gene_1080_tx_35 1 + 116277 116966 . 1 690 0 -chrIV 116277 116967 HC_gene_1080_tx_36 4 + 116277 116967 . 1 691 0 -chrIV 116277 116968 HC_gene_1080_tx_37 1 + 116277 116968 . 1 692 0 -chrIV 116277 116971 HC_gene_1080_tx_38 12 + 116277 116971 . 1 695 0 -chrIV 116277 116972 HC_gene_1080_tx_39 14 + 116277 116972 . 1 696 0 -chrIV 116277 116973 HC_gene_1080_tx_40 11 + 116277 116973 . 1 697 0 -chrIV 116277 116974 HC_gene_1080_tx_41 4 + 116277 116974 . 1 698 0 -chrIV 116277 116975 HC_gene_1080_tx_42 4 + 116277 116975 . 1 699 0 -chrIV 116277 116976 HC_gene_1080_tx_43 6 + 116277 116976 . 1 700 0 -chrIV 116277 116977 HC_gene_1080_tx_44 6 + 116277 116977 . 1 701 0 -chrIV 116277 116978 HC_gene_1080_tx_45 10 + 116277 116978 . 1 702 0 -chrIV 116277 116978 HC_gene_1080_tx_46 1 + 116277 116978 . 2 116,418 0,284 -chrIV 116277 116980 HC_gene_1080_tx_47 1 + 116277 116980 . 1 704 0 -chrIV 116277 116982 HC_gene_1080_tx_48 1 + 116277 116982 . 1 706 0 -chrIV 116277 116984 HC_gene_1080_tx_49 1 + 116277 116984 . 1 708 0 -chrIV 116277 116985 HC_gene_1080_tx_50 3 + 116277 116985 . 1 709 0 -chrIV 116277 116986 HC_gene_1080_tx_51 1 + 116277 116986 . 1 710 0 -chrIV 116277 116987 HC_gene_1080_tx_52 1 + 116277 116987 . 1 711 0 -chrIV 116277 116988 HC_gene_1080_tx_53 4 + 116277 116988 . 1 712 0 -chrIV 116277 116990 HC_gene_1080_tx_54 1 + 116277 116990 . 1 714 0 -chrIV 116277 116991 HC_gene_1080_tx_55 2 + 116277 116991 . 1 715 0 -chrIV 116277 116992 HC_gene_1080_tx_56 1 + 116277 116992 . 1 716 0 -chrIV 116277 116993 HC_gene_1080_tx_57 1 + 116277 116993 . 1 717 0 -chrIV 116277 116994 HC_gene_1080_tx_58 9 + 116277 116994 . 1 718 0 -chrIV 116277 116995 HC_gene_1080_tx_59 6 + 116277 116995 . 1 719 0 -chrIV 116277 116999 HC_gene_1080_tx_60 8 + 116277 116999 . 1 723 0 -chrIV 116277 117000 HC_gene_1080_tx_61 7 + 116277 117000 . 1 724 0 -chrIV 116277 117002 HC_gene_1080_tx_62 4 + 116277 117002 . 1 726 0 -chrIV 116277 117003 HC_gene_1080_tx_63 18 + 116277 117003 . 1 727 0 -chrIV 116277 117004 HC_gene_1080_tx_64 18 + 116277 117004 . 1 728 0 -chrIV 116277 117005 HC_gene_1080_tx_65 1 + 116277 117005 . 1 729 0 -chrIV 116277 117007 HC_gene_1080_tx_66 1 + 116277 117007 . 1 731 0 -chrIV 116277 117008 HC_gene_1080_tx_67 2 + 116277 117008 . 1 732 0 -chrIV 116277 117009 HC_gene_1080_tx_68 13 + 116277 117009 . 1 733 0 -chrIV 116277 117010 HC_gene_1080_tx_69 2 + 116277 117010 . 1 734 0 -chrIV 116277 117011 HC_gene_1080_tx_70 4 + 116277 117011 . 1 735 0 -chrIV 116277 117012 HC_gene_1080_tx_71 5 + 116277 117012 . 1 736 0 -chrIV 116277 117013 HC_gene_1080_tx_72 10 + 116277 117013 . 1 737 0 -chrIV 116277 117014 HC_gene_1080_tx_73 19 + 116277 117014 . 1 738 0 -chrIV 116277 117015 HC_gene_1080_tx_74 27 + 116277 117015 . 1 739 0 -chrIV 116277 117016 HC_gene_1080_tx_75 13 + 116277 117016 . 1 740 0 -chrIV 116277 117017 HC_gene_1080_tx_76 10 + 116277 117017 . 1 741 0 -chrIV 116277 117018 HC_gene_1080_tx_77 46 + 116277 117018 . 1 742 0 -chrIV 116277 117019 HC_gene_1080_tx_78 10 + 116277 117019 . 1 743 0 -chrIV 116277 117020 HC_gene_1080_tx_79 26 + 116277 117020 . 1 744 0 -chrIV 116277 117020 HC_gene_1080_tx_80 1 + 116277 117020 . 2 207,484 0,260 -chrIV 116277 117021 HC_gene_1080_tx_81 5 + 116277 117021 . 1 745 0 -chrIV 116277 117022 HC_gene_1080_tx_82 11 + 116277 117022 . 1 746 0 -chrIV 116277 117023 HC_gene_1080_tx_83 99 + 116277 117023 . 1 747 0 -chrIV 116277 117024 HC_gene_1080_tx_84 59 + 116277 117024 . 1 748 0 -chrIV 116277 117025 HC_gene_1080_tx_85 20 + 116277 117025 . 1 749 0 -chrIV 116277 117026 HC_gene_1080_tx_86 3 + 116277 117026 . 1 750 0 -chrIV 116277 117027 HC_gene_1080_tx_87 7 + 116277 117027 . 1 751 0 -chrIV 116277 117028 HC_gene_1080_tx_88 11 + 116277 117028 . 1 752 0 -chrIV 116277 117029 HC_gene_1080_tx_89 2 + 116277 117029 . 1 753 0 -chrIV 116277 117031 HC_gene_1080_tx_90 1 + 116277 117031 . 1 755 0 -chrIV 116277 117032 HC_gene_1080_tx_91 1 + 116277 117032 . 1 756 0 -chrIV 116277 117033 HC_gene_1080_tx_92 1 + 116277 117033 . 1 757 0 -chrIV 116277 117034 HC_gene_1080_tx_93 6 + 116277 117034 . 1 758 0 -chrIV 116277 117035 HC_gene_1080_tx_94 4 + 116277 117035 . 1 759 0 -chrIV 116277 117037 HC_gene_1080_tx_95 21 + 116277 117037 . 1 761 0 -chrIV 116277 117038 HC_gene_1080_tx_96 1 + 116277 117038 . 1 762 0 -chrIV 116277 117040 HC_gene_1080_tx_97 3 + 116277 117040 . 1 764 0 -chrIV 116277 117042 HC_gene_1080_tx_98 5 + 116277 117042 . 1 766 0 -chrIV 116277 117043 HC_gene_1080_tx_99 23 + 116277 117043 . 1 767 0 -chrIV 116277 117044 HC_gene_1080_tx_100 2 + 116277 117044 . 1 768 0 -chrIV 116277 117046 HC_gene_1080_tx_101 3 + 116277 117046 . 1 770 0 -chrIV 116277 117048 HC_gene_1080_tx_102 2 + 116277 117048 . 1 772 0 -chrIV 116277 117049 HC_gene_1080_tx_103 2 + 116277 117049 . 1 773 0 -chrIV 116277 117052 HC_gene_1080_tx_104 5 + 116277 117052 . 1 776 0 -chrIV 116277 117053 HC_gene_1080_tx_105 4 + 116277 117053 . 1 777 0 -chrIV 116277 117054 HC_gene_1080_tx_106 1 + 116277 117054 . 1 778 0 -chrIV 116277 117055 HC_gene_1080_tx_107 3 + 116277 117055 . 1 779 0 -chrIV 116277 117056 HC_gene_1080_tx_108 3 + 116277 117056 . 1 780 0 -chrIV 116277 117057 HC_gene_1080_tx_109 2 + 116277 117057 . 1 781 0 -chrIV 116277 117058 HC_gene_1080_tx_110 4 + 116277 117058 . 1 782 0 -chrIV 116277 117059 HC_gene_1080_tx_111 2 + 116277 117059 . 1 783 0 -chrIV 116277 117061 HC_gene_1080_tx_112 3 + 116277 117061 . 1 785 0 -chrIV 116277 117062 HC_gene_1080_tx_113 2 + 116277 117062 . 1 786 0 -chrIV 116277 117065 HC_gene_1080_tx_114 1 + 116277 117065 . 1 789 0 -chrIV 116277 117066 HC_gene_1080_tx_115 1 + 116277 117066 . 1 790 0 -chrIV 116277 117067 HC_gene_1080_tx_116 2 + 116277 117067 . 1 791 0 -chrIV 116277 117068 HC_gene_1080_tx_117 1 + 116277 117068 . 1 792 0 -chrIV 116277 117069 HC_gene_1080_tx_118 1 + 116277 117069 . 2 99,636 0,157 -chrIV 116277 117069 HC_gene_1080_tx_119 1 + 116277 117069 . 1 793 0 -chrIV 116277 117070 HC_gene_1080_tx_120 4 + 116277 117070 . 1 794 0 -chrIV 116277 117071 HC_gene_1080_tx_121 1 + 116277 117071 . 1 795 0 -chrIV 116277 117073 HC_gene_1080_tx_122 2 + 116277 117073 . 1 797 0 -chrIV 116277 117073 HC_gene_1080_tx_123 1 + 116277 117073 . 2 129,576 0,221 -chrIV 116277 117076 HC_gene_1080_tx_124 4 + 116277 117076 . 1 800 0 -chrIV 116277 117078 HC_gene_1080_tx_125 2 + 116277 117078 . 1 802 0 -chrIV 116277 117079 HC_gene_1080_tx_126 2 + 116277 117079 . 1 803 0 -chrIV 116277 117081 HC_gene_1080_tx_127 5 + 116277 117081 . 1 805 0 -chrIV 116277 117082 HC_gene_1080_tx_128 3 + 116277 117082 . 1 806 0 -chrIV 116277 117083 HC_gene_1080_tx_129 2 + 116277 117083 . 1 807 0 -chrIV 116277 117084 HC_gene_1080_tx_130 2 + 116277 117084 . 1 808 0 -chrIV 116277 117087 HC_gene_1080_tx_131 3 + 116277 117087 . 1 811 0 -chrIV 116277 117088 HC_gene_1080_tx_132 10 + 116277 117088 . 1 812 0 -chrIV 116277 117089 HC_gene_1080_tx_133 2 + 116277 117089 . 1 813 0 -chrIV 116277 117090 HC_gene_1080_tx_134 3 + 116277 117090 . 1 814 0 -chrIV 116277 117091 HC_gene_1080_tx_135 1 + 116277 117091 . 1 815 0 -chrIV 116277 117092 HC_gene_1080_tx_136 8 + 116277 117092 . 1 816 0 -chrIV 116277 117094 HC_gene_1080_tx_137 2 + 116277 117094 . 1 818 0 -chrIV 116277 117095 HC_gene_1080_tx_138 2 + 116277 117095 . 1 819 0 -chrIV 116277 117096 HC_gene_1080_tx_139 6 + 116277 117096 . 1 820 0 -chrIV 116277 117097 HC_gene_1080_tx_140 14 + 116277 117097 . 1 821 0 -chrIV 116277 117098 HC_gene_1080_tx_141 3 + 116277 117098 . 1 822 0 -chrIV 116277 117099 HC_gene_1080_tx_142 8 + 116277 117099 . 1 823 0 -chrIV 116277 117100 HC_gene_1080_tx_143 1 + 116277 117100 . 1 824 0 -chrIV 116277 117101 HC_gene_1080_tx_144 3 + 116277 117101 . 1 825 0 -chrIV 116277 117102 HC_gene_1080_tx_145 3 + 116277 117102 . 1 826 0 -chrIV 116277 117103 HC_gene_1080_tx_146 7 + 116277 117103 . 1 827 0 -chrIV 116277 117104 HC_gene_1080_tx_147 9 + 116277 117104 . 1 828 0 -chrIV 116277 117105 HC_gene_1080_tx_148 4 + 116277 117105 . 1 829 0 -chrIV 116277 117106 HC_gene_1080_tx_149 5 + 116277 117106 . 1 830 0 -chrIV 116277 117107 HC_gene_1080_tx_150 10 + 116277 117107 . 1 831 0 -chrIV 116277 117108 HC_gene_1080_tx_151 4 + 116277 117108 . 1 832 0 -chrIV 116277 117109 HC_gene_1080_tx_152 6 + 116277 117109 . 1 833 0 -chrIV 116277 117111 HC_gene_1080_tx_153 2 + 116277 117111 . 1 835 0 -chrIV 116277 117112 HC_gene_1080_tx_154 4 + 116277 117112 . 1 836 0 -chrIV 116277 117113 HC_gene_1080_tx_155 6 + 116277 117113 . 1 837 0 -chrIV 116277 117114 HC_gene_1080_tx_156 5 + 116277 117114 . 1 838 0 -chrIV 116277 117115 HC_gene_1080_tx_157 7 + 116277 117115 . 1 839 0 -chrIV 116277 117116 HC_gene_1080_tx_158 1 + 116277 117116 . 1 840 0 -chrIV 116277 117117 HC_gene_1080_tx_159 18 + 116277 117117 . 1 841 0 -chrIV 116277 117118 HC_gene_1080_tx_160 1 + 116277 117118 . 1 842 0 -chrIV 116277 117119 HC_gene_1080_tx_161 11 + 116277 117119 . 1 843 0 -chrIV 116277 117120 HC_gene_1080_tx_162 1 + 116277 117120 . 1 844 0 -chrIV 116277 117121 HC_gene_1080_tx_163 1 + 116277 117121 . 1 845 0 -chrIV 116277 117122 HC_gene_1080_tx_164 7 + 116277 117122 . 1 846 0 -chrIV 116277 117123 HC_gene_1080_tx_165 3 + 116277 117123 . 1 847 0 -chrIV 116277 117124 HC_gene_1080_tx_166 1 + 116277 117124 . 1 848 0 -chrIV 116277 117125 HC_gene_1080_tx_167 5 + 116277 117125 . 1 849 0 -chrIV 116277 117127 HC_gene_1080_tx_168 4 + 116277 117127 . 1 851 0 -chrIV 116277 117128 HC_gene_1080_tx_169 2 + 116277 117128 . 1 852 0 -chrIV 116277 117129 HC_gene_1080_tx_170 9 + 116277 117129 . 1 853 0 -chrIV 116277 117129 HC_gene_1080_tx_171 1 + 116277 117129 . 2 174,555 0,298 -chrIV 116277 117130 HC_gene_1080_tx_172 1 + 116277 117130 . 1 854 0 -chrIV 116277 117132 HC_gene_1080_tx_173 2 + 116277 117132 . 1 856 0 -chrIV 116277 117134 HC_gene_1080_tx_174 3 + 116277 117134 . 1 858 0 -chrIV 116277 117135 HC_gene_1080_tx_175 4 + 116277 117135 . 1 859 0 -chrIV 116277 117136 HC_gene_1080_tx_176 1 + 116277 117136 . 1 860 0 -chrIV 116277 117137 HC_gene_1080_tx_177 1 + 116277 117137 . 1 861 0 -chrIV 116277 117138 HC_gene_1080_tx_178 3 + 116277 117138 . 1 862 0 -chrIV 116277 117139 HC_gene_1080_tx_179 13 + 116277 117139 . 1 863 0 -chrIV 116277 117140 HC_gene_1080_tx_180 4 + 116277 117140 . 1 864 0 -chrIV 116277 117141 HC_gene_1080_tx_181 17 + 116277 117141 . 1 865 0 -chrIV 116277 117143 HC_gene_1080_tx_182 2 + 116277 117143 . 1 867 0 -chrIV 116277 117144 HC_gene_1080_tx_183 1 + 116277 117144 . 1 868 0 -chrIV 116277 117149 HC_gene_1080_tx_184 1 + 116277 117149 . 1 873 0 -chrIV 116277 117164 HC_gene_1080_tx_185 1 + 116277 117164 . 1 888 0 -chrIV 116277 117409 HC_gene_1080_tx_186 9 + 116277 117409 . 1 1133 0 -chrIV 116520 116924 HC_gene_1080_tx_187 12 + 116520 116924 . 1 405 0 -chrIV 116520 116926 HC_gene_1080_tx_188 1 + 116520 116926 . 1 407 0 -chrIV 116520 116927 HC_gene_1080_tx_189 6 + 116520 116927 . 1 408 0 -chrIV 116520 116928 HC_gene_1080_tx_190 1 + 116520 116928 . 1 409 0 -chrIV 116520 116930 HC_gene_1080_tx_191 2 + 116520 116930 . 1 411 0 -chrIV 116520 116932 HC_gene_1080_tx_192 10 + 116520 116932 . 1 413 0 -chrIV 116520 116938 HC_gene_1080_tx_193 1 + 116520 116938 . 1 419 0 -chrIV 116520 116942 HC_gene_1080_tx_194 1 + 116520 116942 . 1 423 0 -chrIV 116520 116943 HC_gene_1080_tx_195 1 + 116520 116943 . 1 424 0 -chrIV 116520 116947 HC_gene_1080_tx_196 1 + 116520 116947 . 1 428 0 -chrIV 116520 116952 HC_gene_1080_tx_197 1 + 116520 116952 . 1 433 0 -chrIV 116520 116960 HC_gene_1080_tx_198 1 + 116520 116960 . 1 441 0 -chrIV 116520 116961 HC_gene_1080_tx_199 3 + 116520 116961 . 1 442 0 -chrIV 116520 116962 HC_gene_1080_tx_200 2 + 116520 116962 . 1 443 0 -chrIV 116520 116963 HC_gene_1080_tx_201 1 + 116520 116963 . 1 444 0 -chrIV 116520 116970 HC_gene_1080_tx_202 1 + 116520 116970 . 1 451 0 -chrIV 116520 116971 HC_gene_1080_tx_203 3 + 116520 116971 . 1 452 0 -chrIV 116520 116972 HC_gene_1080_tx_204 1 + 116520 116972 . 1 453 0 -chrIV 116520 116973 HC_gene_1080_tx_205 1 + 116520 116973 . 1 454 0 -chrIV 116520 116974 HC_gene_1080_tx_206 1 + 116520 116974 . 1 455 0 -chrIV 116520 116976 HC_gene_1080_tx_207 2 + 116520 116976 . 1 457 0 -chrIV 116520 116977 HC_gene_1080_tx_208 1 + 116520 116977 . 1 458 0 -chrIV 116520 116978 HC_gene_1080_tx_209 5 + 116520 116978 . 1 459 0 -chrIV 116520 116988 HC_gene_1080_tx_210 1 + 116520 116988 . 1 469 0 -chrIV 116520 116993 HC_gene_1080_tx_211 2 + 116520 116993 . 1 474 0 -chrIV 116520 116994 HC_gene_1080_tx_212 1 + 116520 116994 . 1 475 0 -chrIV 116520 116995 HC_gene_1080_tx_213 1 + 116520 116995 . 1 476 0 -chrIV 116520 117000 HC_gene_1080_tx_214 1 + 116520 117000 . 1 481 0 -chrIV 116520 117003 HC_gene_1080_tx_215 2 + 116520 117003 . 1 484 0 -chrIV 116520 117004 HC_gene_1080_tx_216 2 + 116520 117004 . 1 485 0 -chrIV 116520 117011 HC_gene_1080_tx_217 2 + 116520 117011 . 1 492 0 -chrIV 116520 117012 HC_gene_1080_tx_218 2 + 116520 117012 . 1 493 0 -chrIV 116520 117014 HC_gene_1080_tx_219 3 + 116520 117014 . 1 495 0 -chrIV 116520 117015 HC_gene_1080_tx_220 7 + 116520 117015 . 1 496 0 -chrIV 116520 117016 HC_gene_1080_tx_221 2 + 116520 117016 . 1 497 0 -chrIV 116520 117017 HC_gene_1080_tx_222 4 + 116520 117017 . 1 498 0 -chrIV 116520 117018 HC_gene_1080_tx_223 15 + 116520 117018 . 1 499 0 -chrIV 116520 117019 HC_gene_1080_tx_224 2 + 116520 117019 . 1 500 0 -chrIV 116520 117022 HC_gene_1080_tx_225 2 + 116520 117022 . 1 503 0 -chrIV 116520 117023 HC_gene_1080_tx_226 25 + 116520 117023 . 1 504 0 -chrIV 116520 117024 HC_gene_1080_tx_227 18 + 116520 117024 . 1 505 0 -chrIV 116520 117025 HC_gene_1080_tx_228 12 + 116520 117025 . 1 506 0 -chrIV 116520 117026 HC_gene_1080_tx_229 2 + 116520 117026 . 1 507 0 -chrIV 116520 117027 HC_gene_1080_tx_230 2 + 116520 117027 . 1 508 0 -chrIV 116520 117028 HC_gene_1080_tx_231 2 + 116520 117028 . 1 509 0 -chrIV 116520 117034 HC_gene_1080_tx_232 1 + 116520 117034 . 1 515 0 -chrIV 116520 117035 HC_gene_1080_tx_233 1 + 116520 117035 . 1 516 0 -chrIV 116520 117037 HC_gene_1080_tx_234 5 + 116520 117037 . 1 518 0 -chrIV 116520 117042 HC_gene_1080_tx_235 1 + 116520 117042 . 1 523 0 -chrIV 116520 117043 HC_gene_1080_tx_236 6 + 116520 117043 . 1 524 0 -chrIV 116520 117054 HC_gene_1080_tx_237 2 + 116520 117054 . 1 535 0 -chrIV 116520 117058 HC_gene_1080_tx_238 1 + 116520 117058 . 1 539 0 -chrIV 116520 117059 HC_gene_1080_tx_239 1 + 116520 117059 . 1 540 0 -chrIV 116520 117062 HC_gene_1080_tx_240 1 + 116520 117062 . 1 543 0 -chrIV 116520 117067 HC_gene_1080_tx_241 1 + 116520 117067 . 1 548 0 -chrIV 116520 117070 HC_gene_1080_tx_242 1 + 116520 117070 . 1 551 0 -chrIV 116520 117076 HC_gene_1080_tx_243 1 + 116520 117076 . 1 557 0 -chrIV 116520 117077 HC_gene_1080_tx_244 2 + 116520 117077 . 1 558 0 -chrIV 116520 117080 HC_gene_1080_tx_245 1 + 116520 117080 . 1 561 0 -chrIV 116520 117081 HC_gene_1080_tx_246 1 + 116520 117081 . 1 562 0 -chrIV 116520 117085 HC_gene_1080_tx_247 1 + 116520 117085 . 1 566 0 -chrIV 116520 117088 HC_gene_1080_tx_248 5 + 116520 117088 . 1 569 0 -chrIV 116520 117091 HC_gene_1080_tx_249 1 + 116520 117091 . 1 572 0 -chrIV 116520 117092 HC_gene_1080_tx_250 1 + 116520 117092 . 1 573 0 -chrIV 116520 117095 HC_gene_1080_tx_251 1 + 116520 117095 . 1 576 0 -chrIV 116520 117097 HC_gene_1080_tx_252 7 + 116520 117097 . 1 578 0 -chrIV 116520 117099 HC_gene_1080_tx_253 1 + 116520 117099 . 1 580 0 -chrIV 116520 117100 HC_gene_1080_tx_254 1 + 116520 117100 . 1 581 0 -chrIV 116520 117104 HC_gene_1080_tx_255 1 + 116520 117104 . 1 585 0 -chrIV 116520 117105 HC_gene_1080_tx_256 2 + 116520 117105 . 1 586 0 -chrIV 116520 117106 HC_gene_1080_tx_257 1 + 116520 117106 . 1 587 0 -chrIV 116520 117109 HC_gene_1080_tx_258 1 + 116520 117109 . 1 590 0 -chrIV 116520 117110 HC_gene_1080_tx_259 1 + 116520 117110 . 1 591 0 -chrIV 116520 117114 HC_gene_1080_tx_260 1 + 116520 117114 . 1 595 0 -chrIV 116520 117117 HC_gene_1080_tx_261 1 + 116520 117117 . 1 598 0 -chrIV 116520 117118 HC_gene_1080_tx_262 1 + 116520 117118 . 1 599 0 -chrIV 116520 117119 HC_gene_1080_tx_263 2 + 116520 117119 . 1 600 0 -chrIV 116520 117122 HC_gene_1080_tx_264 1 + 116520 117122 . 1 603 0 -chrIV 116520 117124 HC_gene_1080_tx_265 1 + 116520 117124 . 1 605 0 -chrIV 116520 117126 HC_gene_1080_tx_266 2 + 116520 117126 . 1 607 0 -chrIV 116520 117127 HC_gene_1080_tx_267 2 + 116520 117127 . 1 608 0 -chrIV 116520 117128 HC_gene_1080_tx_268 1 + 116520 117128 . 1 609 0 -chrIV 116520 117129 HC_gene_1080_tx_269 4 + 116520 117129 . 1 610 0 -chrIV 116520 117133 HC_gene_1080_tx_270 1 + 116520 117133 . 1 614 0 -chrIV 116520 117137 HC_gene_1080_tx_271 1 + 116520 117137 . 1 618 0 -chrIV 116520 117138 HC_gene_1080_tx_272 3 + 116520 117138 . 1 619 0 -chrIV 116520 117139 HC_gene_1080_tx_273 6 + 116520 117139 . 1 620 0 -chrIV 116520 117140 HC_gene_1080_tx_274 2 + 116520 117140 . 1 621 0 -chrIV 116520 117141 HC_gene_1080_tx_275 1 + 116520 117141 . 1 622 0 -chrIV 116520 117142 HC_gene_1080_tx_276 1 + 116520 117142 . 1 623 0 -chrIV 116520 117144 HC_gene_1080_tx_277 1 + 116520 117144 . 1 625 0 -chrIV 116520 117409 HC_gene_1080_tx_278 5 + 116520 117409 . 1 890 0 -chrIV 116689 116924 HC_gene_1080_tx_281 2 + 116689 116924 . 1 236 0 -chrIV 116689 116927 HC_gene_1080_tx_282 2 + 116689 116927 . 1 239 0 -chrIV 116689 116928 HC_gene_1080_tx_283 1 + 116689 116928 . 1 240 0 -chrIV 116689 116930 HC_gene_1080_tx_284 1 + 116689 116930 . 1 242 0 -chrIV 116689 116932 HC_gene_1080_tx_285 2 + 116689 116932 . 1 244 0 -chrIV 116689 116935 HC_gene_1080_tx_286 1 + 116689 116935 . 1 247 0 -chrIV 116689 116977 HC_gene_1080_tx_287 1 + 116689 116977 . 1 289 0 -chrIV 116689 116978 HC_gene_1080_tx_288 1 + 116689 116978 . 1 290 0 -chrIV 116689 117004 HC_gene_1080_tx_289 1 + 116689 117004 . 1 316 0 -chrIV 116689 117014 HC_gene_1080_tx_290 2 + 116689 117014 . 1 326 0 -chrIV 116689 117018 HC_gene_1080_tx_291 1 + 116689 117018 . 1 330 0 -chrIV 116689 117023 HC_gene_1080_tx_292 4 + 116689 117023 . 1 335 0 -chrIV 116689 117024 HC_gene_1080_tx_293 2 + 116689 117024 . 1 336 0 -chrIV 116689 117025 HC_gene_1080_tx_294 1 + 116689 117025 . 1 337 0 -chrIV 116689 117028 HC_gene_1080_tx_295 1 + 116689 117028 . 1 340 0 -chrIV 116689 117034 HC_gene_1080_tx_296 1 + 116689 117034 . 1 346 0 -chrIV 116689 117037 HC_gene_1080_tx_297 1 + 116689 117037 . 1 349 0 -chrIV 116689 117043 HC_gene_1080_tx_298 2 + 116689 117043 . 1 355 0 -chrIV 116689 117053 HC_gene_1080_tx_299 1 + 116689 117053 . 1 365 0 -chrIV 116689 117065 HC_gene_1080_tx_300 1 + 116689 117065 . 1 377 0 -chrIV 116689 117080 HC_gene_1080_tx_301 1 + 116689 117080 . 1 392 0 -chrIV 116689 117093 HC_gene_1080_tx_302 1 + 116689 117093 . 1 405 0 -chrIV 116689 117097 HC_gene_1080_tx_303 1 + 116689 117097 . 1 409 0 -chrIV 116689 117112 HC_gene_1080_tx_304 1 + 116689 117112 . 1 424 0 -chrIV 116689 117113 HC_gene_1080_tx_305 1 + 116689 117113 . 1 425 0 -chrIV 116689 117114 HC_gene_1080_tx_306 1 + 116689 117114 . 1 426 0 -chrIV 116689 117115 HC_gene_1080_tx_307 1 + 116689 117115 . 1 427 0 -chrIV 116689 117117 HC_gene_1080_tx_308 3 + 116689 117117 . 1 429 0 -chrIV 116689 117129 HC_gene_1080_tx_309 2 + 116689 117129 . 1 441 0 -chrIV 116689 117137 HC_gene_1080_tx_310 1 + 116689 117137 . 1 449 0 -chrIV 116689 117138 HC_gene_1080_tx_311 2 + 116689 117138 . 1 450 0 -chrIV 116689 117141 HC_gene_1080_tx_312 1 + 116689 117141 . 1 453 0 -chrIV 116689 117409 HC_gene_1080_tx_279 1 + 116689 117409 . 1 721 0 -chrIV 116808 116927 HC_gene_1080_tx_313 1 + 116808 116927 . 1 120 0 -chrIV 116808 116932 HC_gene_1080_tx_314 1 + 116808 116932 . 1 125 0 -chrIV 116808 116940 HC_gene_1080_tx_315 2 + 116808 116940 . 1 133 0 -chrIV 116808 116946 HC_gene_1080_tx_316 1 + 116808 116946 . 1 139 0 -chrIV 116808 116961 HC_gene_1080_tx_317 1 + 116808 116961 . 1 154 0 -chrIV 116808 116962 HC_gene_1080_tx_318 2 + 116808 116962 . 1 155 0 -chrIV 116808 116973 HC_gene_1080_tx_319 1 + 116808 116973 . 1 166 0 -chrIV 116808 116977 HC_gene_1080_tx_320 1 + 116808 116977 . 1 170 0 -chrIV 116808 116978 HC_gene_1080_tx_321 2 + 116808 116978 . 1 171 0 -chrIV 116808 117003 HC_gene_1080_tx_322 3 + 116808 117003 . 1 196 0 -chrIV 116808 117009 HC_gene_1080_tx_323 2 + 116808 117009 . 1 202 0 -chrIV 116808 117015 HC_gene_1080_tx_324 1 + 116808 117015 . 1 208 0 -chrIV 116808 117016 HC_gene_1080_tx_325 2 + 116808 117016 . 1 209 0 -chrIV 116808 117017 HC_gene_1080_tx_326 1 + 116808 117017 . 1 210 0 -chrIV 116808 117018 HC_gene_1080_tx_327 8 + 116808 117018 . 1 211 0 -chrIV 116808 117020 HC_gene_1080_tx_328 6 + 116808 117020 . 1 213 0 -chrIV 116808 117022 HC_gene_1080_tx_329 2 + 116808 117022 . 1 215 0 -chrIV 116808 117023 HC_gene_1080_tx_330 19 + 116808 117023 . 1 216 0 -chrIV 116808 117024 HC_gene_1080_tx_331 11 + 116808 117024 . 1 217 0 -chrIV 116808 117025 HC_gene_1080_tx_332 2 + 116808 117025 . 1 218 0 -chrIV 116808 117027 HC_gene_1080_tx_333 1 + 116808 117027 . 1 220 0 -chrIV 116808 117028 HC_gene_1080_tx_334 1 + 116808 117028 . 1 221 0 -chrIV 116808 117034 HC_gene_1080_tx_335 1 + 116808 117034 . 1 227 0 -chrIV 116808 117035 HC_gene_1080_tx_336 1 + 116808 117035 . 1 228 0 -chrIV 116808 117037 HC_gene_1080_tx_337 2 + 116808 117037 . 1 230 0 -chrIV 116808 117040 HC_gene_1080_tx_338 1 + 116808 117040 . 1 233 0 -chrIV 116808 117042 HC_gene_1080_tx_339 1 + 116808 117042 . 1 235 0 -chrIV 116808 117055 HC_gene_1080_tx_340 1 + 116808 117055 . 1 248 0 -chrIV 116808 117062 HC_gene_1080_tx_341 2 + 116808 117062 . 1 255 0 -chrIV 116808 117075 HC_gene_1080_tx_342 1 + 116808 117075 . 1 268 0 -chrIV 116808 117076 HC_gene_1080_tx_343 1 + 116808 117076 . 1 269 0 -chrIV 116808 117080 HC_gene_1080_tx_344 2 + 116808 117080 . 1 273 0 -chrIV 116808 117081 HC_gene_1080_tx_345 1 + 116808 117081 . 1 274 0 -chrIV 116808 117086 HC_gene_1080_tx_346 1 + 116808 117086 . 1 279 0 -chrIV 116808 117088 HC_gene_1080_tx_347 5 + 116808 117088 . 1 281 0 -chrIV 116808 117089 HC_gene_1080_tx_348 1 + 116808 117089 . 1 282 0 -chrIV 116808 117092 HC_gene_1080_tx_349 1 + 116808 117092 . 1 285 0 -chrIV 116808 117097 HC_gene_1080_tx_350 1 + 116808 117097 . 1 290 0 -chrIV 116808 117099 HC_gene_1080_tx_351 1 + 116808 117099 . 1 292 0 -chrIV 116808 117102 HC_gene_1080_tx_352 1 + 116808 117102 . 1 295 0 -chrIV 116808 117103 HC_gene_1080_tx_353 1 + 116808 117103 . 1 296 0 -chrIV 116808 117104 HC_gene_1080_tx_354 2 + 116808 117104 . 1 297 0 -chrIV 116808 117105 HC_gene_1080_tx_355 1 + 116808 117105 . 1 298 0 -chrIV 116808 117106 HC_gene_1080_tx_356 1 + 116808 117106 . 1 299 0 -chrIV 116808 117107 HC_gene_1080_tx_357 2 + 116808 117107 . 1 300 0 -chrIV 116808 117108 HC_gene_1080_tx_358 1 + 116808 117108 . 1 301 0 -chrIV 116808 117113 HC_gene_1080_tx_359 2 + 116808 117113 . 1 306 0 -chrIV 116808 117114 HC_gene_1080_tx_360 2 + 116808 117114 . 1 307 0 -chrIV 116808 117115 HC_gene_1080_tx_361 5 + 116808 117115 . 1 308 0 -chrIV 116808 117117 HC_gene_1080_tx_362 7 + 116808 117117 . 1 310 0 -chrIV 116808 117119 HC_gene_1080_tx_363 5 + 116808 117119 . 1 312 0 -chrIV 116808 117122 HC_gene_1080_tx_364 3 + 116808 117122 . 1 315 0 -chrIV 116808 117123 HC_gene_1080_tx_365 1 + 116808 117123 . 1 316 0 -chrIV 116808 117127 HC_gene_1080_tx_366 1 + 116808 117127 . 1 320 0 -chrIV 116808 117129 HC_gene_1080_tx_367 1 + 116808 117129 . 1 322 0 -chrIV 116808 117133 HC_gene_1080_tx_368 1 + 116808 117133 . 1 326 0 -chrIV 116808 117136 HC_gene_1080_tx_369 1 + 116808 117136 . 1 329 0 -chrIV 116808 117137 HC_gene_1080_tx_370 1 + 116808 117137 . 1 330 0 -chrIV 116808 117139 HC_gene_1080_tx_371 6 + 116808 117139 . 1 332 0 -chrIV 116808 117141 HC_gene_1080_tx_372 2 + 116808 117141 . 1 334 0 -chrIV 116808 117143 HC_gene_1080_tx_373 1 + 116808 117143 . 1 336 0 -chrIV 116808 117144 HC_gene_1080_tx_374 2 + 116808 117144 . 1 337 0 -chrIV 116808 117146 HC_gene_1080_tx_375 1 + 116808 117146 . 1 339 0 -chrIV 116808 117163 HC_gene_1080_tx_376 1 + 116808 117163 . 1 356 0 -chrIV 116808 117409 HC_gene_1080_tx_280 1 + 116808 117409 . 1 602 0 -chrIV 116997 117948 MC_gene_1688_tx_1 1 - 116997 117948 . 1 952 0 -chrIV 117607 118592 HC_gene_1081_tx_1 1 + 117607 118592 . 2 60,435 0,551 -chrIV 117607 118622 HC_gene_1081_tx_2 1 + 117607 118622 . 2 60,465 0,551 -chrIV 117610 118599 HC_gene_1081_tx_3 1 + 117610 118599 . 2 57,442 0,548 -chrIV 117611 118603 HC_gene_1081_tx_4 1 + 117611 118603 . 2 56,446 0,547 -chrIV 117618 118618 HC_gene_1081_tx_5 1 + 117618 118618 . 2 49,461 0,540 -chrIV 117620 118559 HC_gene_1081_tx_6 1 + 117620 118559 . 2 47,402 0,538 -chrIV 117620 118571 HC_gene_1081_tx_7 1 + 117620 118571 . 2 47,414 0,538 -chrIV 117620 118598 HC_gene_1081_tx_8 1 + 117620 118598 . 2 47,441 0,538 -chrIV 117620 118599 HC_gene_1081_tx_9 1 + 117620 118599 . 2 47,442 0,538 -chrIV 117620 118603 HC_gene_1081_tx_10 1 + 117620 118603 . 2 47,446 0,538 -chrIV 117620 118604 HC_gene_1081_tx_11 3 + 117620 118604 . 2 47,447 0,538 -chrIV 117620 118605 HC_gene_1081_tx_12 1 + 117620 118605 . 2 47,448 0,538 -chrIV 117620 118610 HC_gene_1081_tx_13 2 + 117620 118610 . 2 47,453 0,538 -chrIV 117620 118618 HC_gene_1081_tx_14 1 + 117620 118618 . 2 47,461 0,538 -chrIV 117620 118619 HC_gene_1081_tx_15 4 + 117620 118619 . 2 47,462 0,538 -chrIV 117620 118622 HC_gene_1081_tx_16 1 + 117620 118622 . 2 47,465 0,538 -chrIV 117620 118628 HC_gene_1081_tx_17 1 + 117620 118628 . 2 47,471 0,538 -chrIV 117620 118629 HC_gene_1081_tx_18 1 + 117620 118629 . 2 47,472 0,538 -chrIV 117620 118668 HC_gene_1081_tx_19 1 + 117620 118668 . 2 47,511 0,538 -chrIV 117620 118705 HC_gene_1081_tx_20 1 + 117620 118705 . 2 47,548 0,538 -chrIV 117621 118604 HC_gene_1081_tx_21 2 + 117621 118604 . 2 46,447 0,537 -chrIV 117622 118603 HC_gene_1081_tx_22 1 + 117622 118603 . 2 45,446 0,536 -chrIV 117622 118604 HC_gene_1081_tx_23 2 + 117622 118604 . 2 45,447 0,536 -chrIV 117623 118592 HC_gene_1081_tx_24 1 + 117623 118592 . 2 44,435 0,535 -chrIV 117623 118610 HC_gene_1081_tx_25 1 + 117623 118610 . 2 44,453 0,535 -chrIV 117623 118619 HC_gene_1081_tx_26 1 + 117623 118619 . 2 44,462 0,535 -chrIV 117624 118593 HC_gene_1081_tx_27 1 + 117624 118593 . 2 43,436 0,534 -chrIV 117624 118619 HC_gene_1081_tx_28 1 + 117624 118619 . 2 43,462 0,534 -chrIV 117624 118668 HC_gene_1081_tx_29 1 + 117624 118668 . 2 43,511 0,534 -chrIV 117625 118560 HC_gene_1081_tx_30 1 + 117625 118560 . 2 42,403 0,533 -chrIV 117625 118604 HC_gene_1081_tx_31 1 + 117625 118604 . 2 42,447 0,533 -chrIV 117625 118610 HC_gene_1081_tx_32 2 + 117625 118610 . 2 42,453 0,533 -chrIV 117626 118610 HC_gene_1081_tx_33 1 + 117626 118610 . 2 41,453 0,532 -chrIV 117626 118619 HC_gene_1081_tx_34 1 + 117626 118619 . 2 41,462 0,532 -chrIV 117628 118618 HC_gene_1081_tx_35 1 + 117628 118618 . 2 39,461 0,530 -chrIV 117628 118619 HC_gene_1081_tx_36 1 + 117628 118619 . 2 39,462 0,530 -chrIV 117629 118610 HC_gene_1081_tx_37 1 + 117629 118610 . 2 38,453 0,529 -chrIV 117631 118619 HC_gene_1081_tx_38 1 + 117631 118619 . 2 36,462 0,527 -chrIV 117632 118571 HC_gene_1081_tx_39 1 + 117632 118571 . 2 35,414 0,526 -chrIV 117632 118603 HC_gene_1081_tx_40 1 + 117632 118603 . 2 35,446 0,526 -chrIV 117632 118609 HC_gene_1081_tx_41 1 + 117632 118609 . 2 35,452 0,526 -chrIV 117632 118610 HC_gene_1081_tx_42 1 + 117632 118610 . 2 35,453 0,526 -chrIV 117632 118619 HC_gene_1081_tx_43 1 + 117632 118619 . 2 35,462 0,526 -chrIV 117633 118570 HC_gene_1081_tx_44 1 + 117633 118570 . 2 34,413 0,525 -chrIV 117633 118589 HC_gene_1081_tx_45 1 + 117633 118589 . 2 34,432 0,525 -chrIV 117633 118599 HC_gene_1081_tx_46 2 + 117633 118599 . 2 34,442 0,525 -chrIV 117633 118604 HC_gene_1081_tx_47 1 + 117633 118604 . 2 34,447 0,525 -chrIV 117633 118618 HC_gene_1081_tx_48 1 + 117633 118618 . 2 34,461 0,525 -chrIV 117633 118619 HC_gene_1081_tx_49 6 + 117633 118619 . 2 34,462 0,525 -chrIV 117633 118620 HC_gene_1081_tx_50 1 + 117633 118620 . 2 34,463 0,525 -chrIV 117633 118622 HC_gene_1081_tx_51 2 + 117633 118622 . 2 34,465 0,525 -chrIV 117633 118628 HC_gene_1081_tx_52 1 + 117633 118628 . 2 34,471 0,525 -chrIV 117633 118630 HC_gene_1081_tx_53 1 + 117633 118630 . 2 34,473 0,525 -chrIV 117634 118602 HC_gene_1081_tx_54 1 + 117634 118602 . 2 33,445 0,524 -chrIV 117634 118619 HC_gene_1081_tx_55 1 + 117634 118619 . 2 33,462 0,524 -chrIV 117635 118619 HC_gene_1081_tx_56 1 + 117635 118619 . 2 32,462 0,523 -chrIV 117636 118610 HC_gene_1081_tx_57 1 + 117636 118610 . 2 31,453 0,522 -chrIV 117637 118604 HC_gene_1081_tx_58 1 + 117637 118604 . 2 30,447 0,521 -chrIV 117647 118559 HC_gene_1081_tx_59 1 + 117647 118559 . 1 913 0 -chrIV 117647 118560 HC_gene_1081_tx_60 1 + 117647 118560 . 1 914 0 -chrIV 117647 118571 HC_gene_1081_tx_61 1 + 117647 118571 . 1 925 0 -chrIV 117647 118572 HC_gene_1081_tx_62 1 + 117647 118572 . 1 926 0 -chrIV 117647 118582 HC_gene_1081_tx_63 1 + 117647 118582 . 1 936 0 -chrIV 117647 118590 HC_gene_1081_tx_64 1 + 117647 118590 . 1 944 0 -chrIV 117647 118591 HC_gene_1081_tx_65 1 + 117647 118591 . 1 945 0 -chrIV 117647 118593 HC_gene_1081_tx_66 2 + 117647 118593 . 1 947 0 -chrIV 117647 118599 HC_gene_1081_tx_67 1 + 117647 118599 . 1 953 0 -chrIV 117647 118600 HC_gene_1081_tx_68 4 + 117647 118600 . 1 954 0 -chrIV 117647 118603 HC_gene_1081_tx_69 1 + 117647 118603 . 1 957 0 -chrIV 117647 118604 HC_gene_1081_tx_70 7 + 117647 118604 . 1 958 0 -chrIV 117647 118605 HC_gene_1081_tx_71 1 + 117647 118605 . 1 959 0 -chrIV 117647 118609 HC_gene_1081_tx_72 2 + 117647 118609 . 1 963 0 -chrIV 117647 118610 HC_gene_1081_tx_73 6 + 117647 118610 . 1 964 0 -chrIV 117647 118612 HC_gene_1081_tx_74 1 + 117647 118612 . 1 966 0 -chrIV 117647 118614 HC_gene_1081_tx_75 2 + 117647 118614 . 1 968 0 -chrIV 117647 118615 HC_gene_1081_tx_76 2 + 117647 118615 . 1 969 0 -chrIV 117647 118619 HC_gene_1081_tx_77 5 + 117647 118619 . 1 973 0 -chrIV 117647 118620 HC_gene_1081_tx_78 1 + 117647 118620 . 1 974 0 -chrIV 117647 118621 HC_gene_1081_tx_79 2 + 117647 118621 . 1 975 0 -chrIV 117647 118622 HC_gene_1081_tx_80 2 + 117647 118622 . 1 976 0 -chrIV 117647 118628 HC_gene_1081_tx_81 1 + 117647 118628 . 1 982 0 -chrIV 117647 118644 HC_gene_1081_tx_82 1 + 117647 118644 . 1 998 0 -chrIV 117647 118659 HC_gene_1081_tx_83 1 + 117647 118659 . 1 1013 0 -chrIV 117647 118668 HC_gene_1081_tx_84 2 + 117647 118668 . 1 1022 0 -chrIV 117647 118678 HC_gene_1081_tx_85 1 + 117647 118678 . 1 1032 0 -chrIV 117647 118685 HC_gene_1081_tx_86 1 + 117647 118685 . 1 1039 0 -chrIV 117647 118686 HC_gene_1081_tx_87 1 + 117647 118686 . 1 1040 0 -chrIV 117647 118690 HC_gene_1081_tx_88 1 + 117647 118690 . 1 1044 0 -chrIV 117647 118702 HC_gene_1081_tx_89 2 + 117647 118702 . 1 1056 0 -chrIV 117647 118705 HC_gene_1081_tx_90 1 + 117647 118705 . 1 1059 0 -chrIV 117647 118712 HC_gene_1081_tx_91 1 + 117647 118712 . 1 1066 0 -chrIV 118147 118558 HC_gene_1082_tx_1 3 + 118147 118558 . 1 412 0 -chrIV 118147 118559 HC_gene_1082_tx_2 6 + 118147 118559 . 1 413 0 -chrIV 118147 118560 HC_gene_1082_tx_3 5 + 118147 118560 . 1 414 0 -chrIV 118147 118561 HC_gene_1082_tx_4 18 + 118147 118561 . 1 415 0 -chrIV 118147 118562 HC_gene_1082_tx_5 23 + 118147 118562 . 1 416 0 -chrIV 118147 118563 HC_gene_1082_tx_6 6 + 118147 118563 . 1 417 0 -chrIV 118147 118564 HC_gene_1082_tx_7 5 + 118147 118564 . 1 418 0 -chrIV 118147 118566 HC_gene_1082_tx_8 8 + 118147 118566 . 1 420 0 -chrIV 118147 118569 HC_gene_1082_tx_9 2 + 118147 118569 . 1 423 0 -chrIV 118147 118570 HC_gene_1082_tx_10 14 + 118147 118570 . 1 424 0 -chrIV 118147 118571 HC_gene_1082_tx_11 36 + 118147 118571 . 1 425 0 -chrIV 118147 118572 HC_gene_1082_tx_12 56 + 118147 118572 . 1 426 0 -chrIV 118147 118573 HC_gene_1082_tx_13 14 + 118147 118573 . 1 427 0 -chrIV 118147 118574 HC_gene_1082_tx_14 4 + 118147 118574 . 1 428 0 -chrIV 118147 118580 HC_gene_1082_tx_15 5 + 118147 118580 . 1 434 0 -chrIV 118147 118581 HC_gene_1082_tx_16 5 + 118147 118581 . 1 435 0 -chrIV 118147 118582 HC_gene_1082_tx_17 5 + 118147 118582 . 1 436 0 -chrIV 118147 118583 HC_gene_1082_tx_18 7 + 118147 118583 . 1 437 0 -chrIV 118147 118584 HC_gene_1082_tx_19 9 + 118147 118584 . 1 438 0 -chrIV 118147 118585 HC_gene_1082_tx_20 2 + 118147 118585 . 1 439 0 -chrIV 118147 118586 HC_gene_1082_tx_21 2 + 118147 118586 . 1 440 0 -chrIV 118147 118587 HC_gene_1082_tx_22 5 + 118147 118587 . 1 441 0 -chrIV 118147 118588 HC_gene_1082_tx_23 8 + 118147 118588 . 1 442 0 -chrIV 118147 118589 HC_gene_1082_tx_24 37 + 118147 118589 . 1 443 0 -chrIV 118147 118590 HC_gene_1082_tx_25 7 + 118147 118590 . 1 444 0 -chrIV 118147 118591 HC_gene_1082_tx_26 14 + 118147 118591 . 1 445 0 -chrIV 118147 118592 HC_gene_1082_tx_27 62 + 118147 118592 . 1 446 0 -chrIV 118147 118593 HC_gene_1082_tx_28 33 + 118147 118593 . 1 447 0 -chrIV 118147 118594 HC_gene_1082_tx_29 20 + 118147 118594 . 1 448 0 -chrIV 118147 118595 HC_gene_1082_tx_30 17 + 118147 118595 . 1 449 0 -chrIV 118147 118596 HC_gene_1082_tx_31 34 + 118147 118596 . 1 450 0 -chrIV 118147 118597 HC_gene_1082_tx_32 16 + 118147 118597 . 1 451 0 -chrIV 118147 118598 HC_gene_1082_tx_33 62 + 118147 118598 . 1 452 0 -chrIV 118147 118599 HC_gene_1082_tx_34 79 + 118147 118599 . 1 453 0 -chrIV 118147 118600 HC_gene_1082_tx_35 103 + 118147 118600 . 1 454 0 -chrIV 118147 118601 HC_gene_1082_tx_36 13 + 118147 118601 . 1 455 0 -chrIV 118147 118602 HC_gene_1082_tx_37 79 + 118147 118602 . 1 456 0 -chrIV 118147 118603 HC_gene_1082_tx_38 157 + 118147 118603 . 1 457 0 -chrIV 118147 118604 HC_gene_1082_tx_39 561 + 118147 118604 . 1 458 0 -chrIV 118147 118605 HC_gene_1082_tx_40 83 + 118147 118605 . 1 459 0 -chrIV 118147 118606 HC_gene_1082_tx_41 25 + 118147 118606 . 1 460 0 -chrIV 118147 118607 HC_gene_1082_tx_42 15 + 118147 118607 . 1 461 0 -chrIV 118147 118608 HC_gene_1082_tx_43 36 + 118147 118608 . 1 462 0 -chrIV 118147 118609 HC_gene_1082_tx_44 115 + 118147 118609 . 1 463 0 -chrIV 118147 118610 HC_gene_1082_tx_45 303 + 118147 118610 . 1 464 0 -chrIV 118147 118611 HC_gene_1082_tx_46 40 + 118147 118611 . 1 465 0 -chrIV 118147 118612 HC_gene_1082_tx_47 21 + 118147 118612 . 1 466 0 -chrIV 118147 118613 HC_gene_1082_tx_48 14 + 118147 118613 . 1 467 0 -chrIV 118147 118614 HC_gene_1082_tx_49 5 + 118147 118614 . 1 468 0 -chrIV 118147 118615 HC_gene_1082_tx_50 15 + 118147 118615 . 1 469 0 -chrIV 118147 118616 HC_gene_1082_tx_51 9 + 118147 118616 . 1 470 0 -chrIV 118147 118617 HC_gene_1082_tx_52 4 + 118147 118617 . 1 471 0 -chrIV 118147 118618 HC_gene_1082_tx_53 140 + 118147 118618 . 1 472 0 -chrIV 118147 118619 HC_gene_1082_tx_54 652 + 118147 118619 . 1 473 0 -chrIV 118147 118620 HC_gene_1082_tx_55 60 + 118147 118620 . 1 474 0 -chrIV 118147 118621 HC_gene_1082_tx_56 55 + 118147 118621 . 1 475 0 -chrIV 118147 118622 HC_gene_1082_tx_57 103 + 118147 118622 . 1 476 0 -chrIV 118147 118623 HC_gene_1082_tx_58 13 + 118147 118623 . 1 477 0 -chrIV 118147 118625 HC_gene_1082_tx_59 2 + 118147 118625 . 1 479 0 -chrIV 118147 118627 HC_gene_1082_tx_60 14 + 118147 118627 . 1 481 0 -chrIV 118147 118628 HC_gene_1082_tx_61 58 + 118147 118628 . 1 482 0 -chrIV 118147 118629 HC_gene_1082_tx_62 10 + 118147 118629 . 1 483 0 -chrIV 118147 118630 HC_gene_1082_tx_63 58 + 118147 118630 . 1 484 0 -chrIV 118147 118631 HC_gene_1082_tx_64 3 + 118147 118631 . 1 485 0 -chrIV 118147 118632 HC_gene_1082_tx_65 2 + 118147 118632 . 1 486 0 -chrIV 118147 118634 HC_gene_1082_tx_66 12 + 118147 118634 . 1 488 0 -chrIV 118147 118636 HC_gene_1082_tx_67 4 + 118147 118636 . 1 490 0 -chrIV 118147 118639 HC_gene_1082_tx_68 5 + 118147 118639 . 1 493 0 -chrIV 118147 118644 HC_gene_1082_tx_69 5 + 118147 118644 . 1 498 0 -chrIV 118147 118650 HC_gene_1082_tx_70 3 + 118147 118650 . 1 504 0 -chrIV 118147 118652 HC_gene_1082_tx_71 7 + 118147 118652 . 1 506 0 -chrIV 118147 118653 HC_gene_1082_tx_72 14 + 118147 118653 . 1 507 0 -chrIV 118147 118654 HC_gene_1082_tx_73 17 + 118147 118654 . 1 508 0 -chrIV 118147 118656 HC_gene_1082_tx_74 2 + 118147 118656 . 1 510 0 -chrIV 118147 118658 HC_gene_1082_tx_75 2 + 118147 118658 . 1 512 0 -chrIV 118147 118659 HC_gene_1082_tx_76 6 + 118147 118659 . 1 513 0 -chrIV 118147 118662 HC_gene_1082_tx_77 19 + 118147 118662 . 1 516 0 -chrIV 118147 118663 HC_gene_1082_tx_78 2 + 118147 118663 . 1 517 0 -chrIV 118147 118664 HC_gene_1082_tx_79 2 + 118147 118664 . 1 518 0 -chrIV 118147 118667 HC_gene_1082_tx_80 5 + 118147 118667 . 1 521 0 -chrIV 118147 118668 HC_gene_1082_tx_81 18 + 118147 118668 . 1 522 0 -chrIV 118147 118672 HC_gene_1082_tx_82 4 + 118147 118672 . 1 526 0 -chrIV 118147 118677 HC_gene_1082_tx_83 5 + 118147 118677 . 1 531 0 -chrIV 118147 118678 HC_gene_1082_tx_84 5 + 118147 118678 . 1 532 0 -chrIV 118147 118679 HC_gene_1082_tx_85 13 + 118147 118679 . 1 533 0 -chrIV 118147 118680 HC_gene_1082_tx_86 4 + 118147 118680 . 1 534 0 -chrIV 118147 118681 HC_gene_1082_tx_87 2 + 118147 118681 . 1 535 0 -chrIV 118147 118683 HC_gene_1082_tx_88 2 + 118147 118683 . 1 537 0 -chrIV 118147 118685 HC_gene_1082_tx_89 6 + 118147 118685 . 1 539 0 -chrIV 118147 118686 HC_gene_1082_tx_90 14 + 118147 118686 . 1 540 0 -chrIV 118147 118687 HC_gene_1082_tx_91 5 + 118147 118687 . 1 541 0 -chrIV 118147 118689 HC_gene_1082_tx_92 3 + 118147 118689 . 1 543 0 -chrIV 118147 118690 HC_gene_1082_tx_93 4 + 118147 118690 . 1 544 0 -chrIV 118147 118691 HC_gene_1082_tx_94 3 + 118147 118691 . 1 545 0 -chrIV 118147 118692 HC_gene_1082_tx_95 7 + 118147 118692 . 1 546 0 -chrIV 118147 118695 HC_gene_1082_tx_96 3 + 118147 118695 . 1 549 0 -chrIV 118147 118696 HC_gene_1082_tx_97 4 + 118147 118696 . 1 550 0 -chrIV 118147 118697 HC_gene_1082_tx_98 14 + 118147 118697 . 1 551 0 -chrIV 118147 118699 HC_gene_1082_tx_99 7 + 118147 118699 . 1 553 0 -chrIV 118147 118700 HC_gene_1082_tx_100 3 + 118147 118700 . 1 554 0 -chrIV 118147 118701 HC_gene_1082_tx_101 2 + 118147 118701 . 1 555 0 -chrIV 118147 118702 HC_gene_1082_tx_102 11 + 118147 118702 . 1 556 0 -chrIV 118147 118703 HC_gene_1082_tx_103 3 + 118147 118703 . 1 557 0 -chrIV 118147 118705 HC_gene_1082_tx_104 13 + 118147 118705 . 1 559 0 -chrIV 118147 118706 HC_gene_1082_tx_105 7 + 118147 118706 . 1 560 0 -chrIV 118147 118707 HC_gene_1082_tx_106 2 + 118147 118707 . 1 561 0 -chrIV 118147 118709 HC_gene_1082_tx_107 3 + 118147 118709 . 1 563 0 -chrIV 118147 118717 HC_gene_1082_tx_108 2 + 118147 118717 . 1 571 0 -chrIV 118484 119001 HC_gene_1689_tx_1 25 - 118484 119001 . 1 518 0 -chrIV 118484 120533 HC_gene_1689_tx_2 4 - 118484 120533 . 1 2050 0 -chrIV 118484 120884 HC_gene_1689_tx_3 1 - 118484 120884 . 1 2401 0 -chrIV 118484 120939 HC_gene_1689_tx_4 1 - 118484 120939 . 1 2456 0 -chrIV 118484 121788 HC_gene_1689_tx_5 12 - 118484 121788 . 1 3305 0 -chrIV 118484 121788 HC_gene_1689_tx_6 1 - 118484 121788 . 2 1329,1909 0,1396 -chrIV 120544 121634 HC_gene_1689_tx_7 1 - 120544 121634 . 1 1091 0 -chrIV 120544 121716 HC_gene_1689_tx_8 1 - 120544 121716 . 1 1173 0 -chrIV 120544 121788 HC_gene_1689_tx_9 5 - 120544 121788 . 1 1245 0 -chrIV 122022 123684 HC_gene_1083_tx_1 8 + 122022 123684 . 2 56,1508 0,155 -chrIV 122022 123684 HC_gene_1083_tx_2 1 + 122022 123684 . 2 47,837 0,826 -chrIV 122022 123684 HC_gene_1083_tx_3 1 + 122022 123684 . 2 50,1508 0,155 -chrIV 122022 123684 HC_gene_1083_tx_4 1 + 122022 123684 . 2 56,1483 0,180 -chrIV 122022 123684 HC_gene_1083_tx_5 2 + 122022 123684 . 2 56,1503 0,160 -chrIV 122199 123684 HC_gene_1083_tx_6 9 + 122199 123684 . 1 1486 0 -chrIV 122199 123684 HC_gene_1083_tx_7 1 + 122199 123684 . 2 609,777 0,709 -chrIV 123708 124911 HC_gene_1690_tx_1 2 - 123708 124911 . 1 1204 0 -chrIV 123708 125155 HC_gene_1690_tx_2 9 - 123708 125155 . 1 1448 0 -chrIV 123819 124911 HC_gene_1690_tx_3 5 - 123819 124911 . 1 1093 0 -chrIV 123819 125155 HC_gene_1690_tx_4 37 - 123819 125155 . 1 1337 0 -chrIV 124877 125715 LC_gene_1084_tx_1 1 + 124877 125715 . 1 839 0 -chrIV 125510 126466 HC_gene_1691_tx_1 3 - 125510 126466 . 1 957 0 -chrIV 125510 126466 HC_gene_1691_tx_2 1 - 125510 126466 . 2 264,652 0,305 -chrIV 125586 126466 HC_gene_1691_tx_3 7 - 125586 126466 . 1 881 0 -chrIV 126688 130123 HC_gene_1085_tx_1 1 + 126688 130123 . 2 1169,2169 0,1267 -chrIV 126688 130123 HC_gene_1085_tx_2 105 + 126688 130123 . 1 3436 0 -chrIV 126688 130123 HC_gene_1085_tx_3 1 + 126688 130123 . 2 1314,2048 0,1388 -chrIV 126688 130123 HC_gene_1085_tx_4 1 + 126688 130123 . 2 2380,925 0,2511 -chrIV 126688 130123 HC_gene_1085_tx_5 1 + 126688 130123 . 2 2439,941 0,2495 -chrIV 126688 130123 HC_gene_1085_tx_6 1 + 126688 130123 . 2 1129,2208 0,1228 -chrIV 126688 130123 HC_gene_1085_tx_7 1 + 126688 130123 . 2 1171,2208 0,1228 -chrIV 126688 130123 HC_gene_1085_tx_8 1 + 126688 130123 . 2 531,2267 0,1169 -chrIV 126688 130123 HC_gene_1085_tx_9 1 + 126688 130123 . 2 1133,2204 0,1232 -chrIV 126688 130123 HC_gene_1085_tx_10 1 + 126688 130123 . 2 2368,1003 0,2433 -chrIV 126688 130123 HC_gene_1085_tx_11 1 + 126688 130123 . 2 850,2476 0,960 -chrIV 126688 130123 HC_gene_1085_tx_12 1 + 126688 130123 . 2 346,2422 0,1014 -chrIV 126688 130123 HC_gene_1085_tx_13 1 + 126688 130123 . 2 2342,1044 0,2392 -chrIV 126688 130123 HC_gene_1085_tx_14 1 + 126688 130123 . 2 1785,1547 0,1889 -chrIV 126688 130123 HC_gene_1085_tx_15 1 + 126688 130123 . 3 1129,1161,1033 0,1199,2403 -chrIV 126688 130123 HC_gene_1085_tx_16 1 + 126688 130123 . 2 1204,2171 0,1265 -chrIV 126688 130123 HC_gene_1085_tx_17 1 + 126688 130123 . 2 1858,1499 0,1937 -chrIV 126688 130123 HC_gene_1085_tx_18 1 + 126688 130123 . 2 2749,626 0,2810 -chrIV 126688 130123 HC_gene_1085_tx_19 1 + 126688 130123 . 2 2383,959 0,2477 -chrIV 126688 130123 HC_gene_1085_tx_20 1 + 126688 130123 . 2 2428,930 0,2506 -chrIV 126961 130123 HC_gene_1085_tx_21 5 + 126961 130123 . 1 3163 0 -chrIV 126961 130123 HC_gene_1085_tx_22 1 + 126961 130123 . 2 367,2528 0,635 -chrIV 127648 130123 HC_gene_1085_tx_23 15 + 127648 130123 . 1 2476 0 -chrIV 127928 130123 HC_gene_1085_tx_24 24 + 127928 130123 . 1 2196 0 -chrIV 128040 130123 HC_gene_1085_tx_25 13 + 128040 130123 . 1 2084 0 -chrIV 128040 130123 HC_gene_1085_tx_26 1 + 128040 130123 . 2 407,990 0,1094 -chrIV 128040 130123 HC_gene_1085_tx_27 1 + 128040 130123 . 2 321,1448 0,636 -chrIV 128116 130123 HC_gene_1085_tx_28 7 + 128116 130123 . 1 2008 0 -chrIV 128116 130123 HC_gene_1085_tx_29 1 + 128116 130123 . 2 1312,581 0,1427 -chrIV 128500 130123 HC_gene_1085_tx_30 24 + 128500 130123 . 1 1624 0 -chrIV 128500 130123 HC_gene_1085_tx_31 1 + 128500 130123 . 2 1402,179 0,1445 -chrIV 128680 130123 HC_gene_1085_tx_32 39 + 128680 130123 . 1 1444 0 -chrIV 128680 130123 HC_gene_1085_tx_33 1 + 128680 130123 . 2 1107,274 0,1170 -chrIV 128680 130123 HC_gene_1085_tx_34 1 + 128680 130123 . 2 360,941 0,503 -chrIV 128737 130123 HC_gene_1085_tx_35 3 + 128737 130123 . 1 1387 0 -chrIV 128798 130123 HC_gene_1085_tx_36 38 + 128798 130123 . 1 1326 0 -chrIV 128798 130123 HC_gene_1085_tx_37 1 + 128798 130123 . 2 1188,40 0,1286 -chrIV 128798 130123 HC_gene_1085_tx_38 1 + 128798 130123 . 2 121,1113 0,213 -chrIV 128798 130123 HC_gene_1085_tx_39 1 + 128798 130123 . 2 91,1098 0,228 -chrIV 128984 130123 HC_gene_1085_tx_40 42 + 128984 130123 . 1 1140 0 -chrIV 129307 130123 HC_gene_1085_tx_41 52 + 129307 130123 . 1 817 0 -chrIV 129470 130123 HC_gene_1085_tx_42 100 + 129470 130123 . 1 654 0 -chrIV 129610 130123 HC_gene_1085_tx_43 68 + 129610 130123 . 1 514 0 -chrIV 129676 130008 LC_gene_1692_tx_1 1 - 129676 130008 . 1 333 0 -chrIV 130188 130507 HC_gene_1693_tx_1 17830 - 130188 130507 . 1 320 0 -chrIV 130705 131900 HC_gene_1694_tx_1 11 - 130705 131900 . 1 1196 0 -chrIV 130705 132037 HC_gene_1694_tx_2 1 - 130705 132037 . 1 1333 0 -chrIV 130705 132712 HC_gene_1694_tx_5 1 - 130705 132712 . 2 326,1084 0,924 -chrIV 130705 132712 HC_gene_1694_tx_6 3 - 130705 132712 . 1 2008 0 -chrIV 130811 131900 HC_gene_1694_tx_3 5 - 130811 131900 . 1 1090 0 -chrIV 130811 132037 HC_gene_1694_tx_4 2 - 130811 132037 . 1 1227 0 -chrIV 130938 131530 MC_gene_1086_tx_1 1 + 130938 131530 . 1 593 0 -chrIV 132142 132662 LC_gene_1087_tx_1 1 + 132142 132662 . 1 521 0 -chrIV 133405 134812 HC_gene_1088_tx_1 634 + 133405 134812 . 1 1408 0 -chrIV 134175 134812 HC_gene_1088_tx_2 111 + 134175 134812 . 1 638 0 -chrIV 134370 134812 HC_gene_1088_tx_3 123 + 134370 134812 . 1 443 0 -chrIV 134432 134812 HC_gene_1088_tx_4 40 + 134432 134812 . 1 381 0 -chrIV 134721 135533 MC_gene_1695_tx_1 1 - 134721 135533 . 1 813 0 -chrIV 135015 135556 HC_gene_1089_tx_1 18 + 135015 135556 . 1 542 0 -chrIV 135092 135556 HC_gene_1089_tx_2 111 + 135092 135556 . 1 465 0 -chrIV 135273 135556 HC_gene_1089_tx_3 11 + 135273 135556 . 1 284 0 -chrIV 135717 137567 HC_gene_1090_tx_1 15 + 135717 137567 . 1 1851 0 -chrIV 135717 137567 HC_gene_1090_tx_2 1 + 135717 137567 . 2 223,1542 0,309 -chrIV 135717 137697 HC_gene_1090_tx_3 5 + 135717 137697 . 1 1981 0 -chrIV 137610 137883 HC_gene_1696_tx_1 10 - 137610 137883 . 1 274 0 -chrIV 138085 139399 HC_gene_1091_tx_1 8 + 138085 139399 . 1 1315 0 -chrIV 138085 139399 HC_gene_1091_tx_2 1 + 138085 139399 . 2 58,851 0,464 -chrIV 138085 139399 HC_gene_1091_tx_3 1 + 138085 139399 . 2 354,851 0,464 -chrIV 138195 139399 HC_gene_1091_tx_4 27 + 138195 139399 . 1 1205 0 -chrIV 138195 139399 HC_gene_1091_tx_5 1 + 138195 139399 . 2 62,694 0,511 -chrIV 138280 139399 HC_gene_1091_tx_6 3 + 138280 139399 . 1 1120 0 -chrIV 138683 139369 MC_gene_1697_tx_1 1 - 138683 139369 . 1 687 0 -chrIV 139505 141179 HC_gene_1092_tx_1 49 + 139505 141179 . 1 1675 0 -chrIV 139505 141179 HC_gene_1092_tx_2 1 + 139505 141179 . 2 629,979 0,696 -chrIV 139505 141179 HC_gene_1092_tx_3 1 + 139505 141179 . 2 933,646 0,1029 -chrIV 139505 141179 HC_gene_1092_tx_4 1 + 139505 141179 . 2 1060,532 0,1143 -chrIV 139517 141179 HC_gene_1092_tx_5 1 + 139517 141179 . 2 1115,343 0,1320 -chrIV 140024 141179 HC_gene_1092_tx_6 5 + 140024 141179 . 1 1156 0 -chrIV 140626 141179 HC_gene_1092_tx_7 10 + 140626 141179 . 1 554 0 -chrIV 141118 141774 HC_gene_1698_tx_1 44 - 141118 141774 . 1 657 0 -chrIV 141956 144334 HC_gene_1093_tx_1 3 + 141956 144334 . 1 2379 0 -chrIV 144169 145546 HC_gene_1699_tx_1 1 - 144169 145546 . 1 1378 0 -chrIV 144265 145546 HC_gene_1699_tx_2 27 - 144265 145546 . 1 1282 0 -chrIV 145730 146112 HC_gene_1700_tx_1 12 - 145730 146112 . 1 383 0 -chrIV 145730 147005 HC_gene_1700_tx_2 4 - 145730 147005 . 1 1276 0 -chrIV 145730 147278 HC_gene_1700_tx_3 3 - 145730 147278 . 1 1549 0 -chrIV 145730 147383 HC_gene_1700_tx_4 3 - 145730 147383 . 1 1654 0 -chrIV 145730 147462 HC_gene_1700_tx_5 1 - 145730 147462 . 1 1733 0 -chrIV 145730 147609 HC_gene_1700_tx_6 23 - 145730 147609 . 1 1880 0 -chrIV 145776 147792 MC_gene_1094_tx_1 1 + 145776 147792 . 1 2017 0 -chrIV 147025 148043 MC_gene_1095_tx_1 1 + 147025 148043 . 1 1019 0 -chrIV 148147 149205 HC_gene_1096_tx_1 95 + 148147 149205 . 1 1059 0 -chrIV 148147 149205 HC_gene_1096_tx_2 1 + 148147 149205 . 2 240,747 0,312 -chrIV 148147 149205 HC_gene_1096_tx_3 1 + 148147 149205 . 2 960,53 0,1006 -chrIV 148147 149205 HC_gene_1096_tx_4 1 + 148147 149205 . 2 321,465 0,594 -chrIV 148345 149205 HC_gene_1096_tx_5 7 + 148345 149205 . 1 861 0 -chrIV 148345 149205 HC_gene_1096_tx_6 1 + 148345 149205 . 2 411,370 0,491 -chrIV 148416 149205 HC_gene_1096_tx_7 13 + 148416 149205 . 1 790 0 -chrIV 148416 149205 HC_gene_1096_tx_8 1 + 148416 149205 . 2 701,53 0,737 -chrIV 148546 149205 HC_gene_1096_tx_9 15 + 148546 149205 . 1 660 0 -chrIV 148673 149205 HC_gene_1096_tx_10 12 + 148673 149205 . 1 533 0 -chrIV 148759 149205 HC_gene_1096_tx_11 10 + 148759 149205 . 1 447 0 -chrIV 148759 149205 HC_gene_1096_tx_12 1 + 148759 149205 . 2 135,257 0,190 -chrIV 148826 149205 HC_gene_1096_tx_13 12 + 148826 149205 . 1 380 0 -chrIV 149081 149594 HC_gene_1701_tx_1 26 - 149081 149594 . 1 514 0 -chrIV 149081 149895 HC_gene_1701_tx_2 23 - 149081 149895 . 1 815 0 -chrIV 149081 150186 HC_gene_1701_tx_3 11 - 149081 150186 . 1 1106 0 -chrIV 149081 150284 HC_gene_1701_tx_4 1 - 149081 150284 . 2 887,210 0,994 -chrIV 149081 150284 HC_gene_1701_tx_5 1 - 149081 150284 . 1 1204 0 -chrIV 149081 150650 HC_gene_1701_tx_6 9 - 149081 150650 . 1 1570 0 -chrIV 149081 150951 HC_gene_1701_tx_7 7 - 149081 150951 . 1 1871 0 -chrIV 149081 150951 HC_gene_1701_tx_8 1 - 149081 150951 . 2 594,1225 0,646 -chrIV 149081 151179 HC_gene_1701_tx_9 3 - 149081 151179 . 1 2099 0 -chrIV 149081 151301 HC_gene_1701_tx_10 5 - 149081 151301 . 1 2221 0 -chrIV 149081 152133 HC_gene_1701_tx_11 1 - 149081 152133 . 1 3053 0 -chrIV 149081 152255 HC_gene_1701_tx_12 1 - 149081 152255 . 1 3175 0 -chrIV 149081 152410 HC_gene_1701_tx_13 2 - 149081 152410 . 1 3330 0 -chrIV 149081 152754 HC_gene_1701_tx_14 2 - 149081 152754 . 1 3674 0 -chrIV 149081 153170 HC_gene_1701_tx_15 1 - 149081 153170 . 1 4090 0 -chrIV 149081 153701 HC_gene_1701_tx_16 1 - 149081 153701 . 2 70,4495 0,126 -chrIV 149081 153701 HC_gene_1701_tx_17 1 - 149081 153701 . 1 4621 0 -chrIV 149081 154992 HC_gene_1701_tx_18 1 - 149081 154992 . 1 5912 0 -chrIV 149081 155641 HC_gene_1701_tx_19 2 - 149081 155641 . 1 6561 0 -chrIV 149081 155897 HC_gene_1701_tx_20 5 - 149081 155897 . 1 6817 0 -chrIV 149524 149996 LC_gene_1097_tx_1 1 + 149524 149996 . 1 473 0 -chrIV 156317 158030 HC_gene_1098_tx_1 18 + 156317 158030 . 1 1714 0 -chrIV 156317 158030 HC_gene_1098_tx_2 1 + 156317 158030 . 2 945,674 0,1040 -chrIV 156317 158030 HC_gene_1098_tx_3 1 + 156317 158030 . 2 316,1257 0,457 -chrIV 156317 158030 HC_gene_1098_tx_4 1 + 156317 158030 . 2 567,757 0,957 -chrIV 156317 158091 HC_gene_1098_tx_5 8 + 156317 158091 . 1 1775 0 -chrIV 156586 158030 HC_gene_1098_tx_6 3 + 156586 158030 . 1 1445 0 -chrIV 157992 158574 HC_gene_1702_tx_1 2 - 157992 158574 . 1 583 0 -chrIV 157992 158736 HC_gene_1702_tx_2 15 - 157992 158736 . 1 745 0 -chrIV 158698 159295 LC_gene_1099_tx_1 1 + 158698 159295 . 1 598 0 -chrIV 159570 160810 HC_gene_1100_tx_1 2 + 159570 160810 . 1 1241 0 -chrIV 159570 160812 HC_gene_1100_tx_2 1 + 159570 160812 . 1 1243 0 -chrIV 159570 160813 HC_gene_1100_tx_3 3 + 159570 160813 . 1 1244 0 -chrIV 159570 160814 HC_gene_1100_tx_4 1 + 159570 160814 . 1 1245 0 -chrIV 159570 160814 HC_gene_1100_tx_5 1 + 159570 160814 . 2 175,175 0,1070 -chrIV 159570 160815 HC_gene_1100_tx_6 1 + 159570 160815 . 1 1246 0 -chrIV 159570 160818 HC_gene_1100_tx_7 1 + 159570 160818 . 1 1249 0 -chrIV 159570 160819 HC_gene_1100_tx_8 8 + 159570 160819 . 1 1250 0 -chrIV 159570 160820 HC_gene_1100_tx_9 1 + 159570 160820 . 2 551,639 0,612 -chrIV 159570 160820 HC_gene_1100_tx_10 2 + 159570 160820 . 1 1251 0 -chrIV 159570 160821 HC_gene_1100_tx_11 1 + 159570 160821 . 1 1252 0 -chrIV 159570 160822 HC_gene_1100_tx_12 3 + 159570 160822 . 1 1253 0 -chrIV 159570 160825 HC_gene_1100_tx_13 1 + 159570 160825 . 1 1256 0 -chrIV 159570 160834 HC_gene_1100_tx_14 1 + 159570 160834 . 1 1265 0 -chrIV 159570 160842 HC_gene_1100_tx_15 1 + 159570 160842 . 1 1273 0 -chrIV 159570 160850 HC_gene_1100_tx_16 2 + 159570 160850 . 1 1281 0 -chrIV 159570 160851 HC_gene_1100_tx_17 1 + 159570 160851 . 1 1282 0 -chrIV 159570 160853 HC_gene_1100_tx_18 3 + 159570 160853 . 1 1284 0 -chrIV 159570 160858 HC_gene_1100_tx_19 1 + 159570 160858 . 1 1289 0 -chrIV 159570 160864 HC_gene_1100_tx_20 1 + 159570 160864 . 2 517,691 0,604 -chrIV 159570 160864 HC_gene_1100_tx_21 3 + 159570 160864 . 1 1295 0 -chrIV 159570 160871 HC_gene_1100_tx_22 1 + 159570 160871 . 1 1302 0 -chrIV 159570 160970 HC_gene_1100_tx_23 68 + 159570 160970 . 1 1401 0 -chrIV 159570 160970 HC_gene_1100_tx_24 1 + 159570 160970 . 2 608,709 0,692 -chrIV 159570 160970 HC_gene_1100_tx_25 1 + 159570 160970 . 2 1131,206 0,1195 -chrIV 160219 160851 HC_gene_1100_tx_26 1 + 160219 160851 . 1 633 0 -chrIV 160219 160853 HC_gene_1100_tx_27 1 + 160219 160853 . 1 635 0 -chrIV 160219 160864 HC_gene_1100_tx_28 1 + 160219 160864 . 1 646 0 -chrIV 160219 160970 HC_gene_1100_tx_29 6 + 160219 160970 . 1 752 0 -chrIV 160409 160819 HC_gene_1100_tx_30 2 + 160409 160819 . 1 411 0 -chrIV 160409 160853 HC_gene_1100_tx_31 1 + 160409 160853 . 1 445 0 -chrIV 160409 160871 HC_gene_1100_tx_32 1 + 160409 160871 . 1 463 0 -chrIV 160409 160970 HC_gene_1100_tx_33 12 + 160409 160970 . 1 562 0 -chrIV 160487 160819 HC_gene_1100_tx_34 3 + 160487 160819 . 1 333 0 -chrIV 160487 160820 HC_gene_1100_tx_35 1 + 160487 160820 . 1 334 0 -chrIV 160487 160863 HC_gene_1100_tx_36 1 + 160487 160863 . 1 377 0 -chrIV 160487 160970 HC_gene_1100_tx_37 14 + 160487 160970 . 1 484 0 -chrIV 160813 162998 HC_gene_1703_tx_1 4 - 160813 162998 . 1 2186 0 -chrIV 160813 162998 HC_gene_1703_tx_2 1 - 160813 162998 . 3 696,461,431 0,1228,1755 -chrIV 160813 163187 HC_gene_1703_tx_3 1 - 160813 163187 . 2 2097,208 0,2167 -chrIV 160813 163201 HC_gene_1703_tx_4 1 - 160813 163201 . 2 21,2107 0,282 -chrIV 160813 163201 HC_gene_1703_tx_5 37 - 160813 163201 . 1 2389 0 -chrIV 160813 163201 HC_gene_1703_tx_6 1 - 160813 163201 . 2 1490,570 0,1819 -chrIV 160813 163201 HC_gene_1703_tx_7 1 - 160813 163201 . 2 693,1637 0,752 -chrIV 160813 163201 HC_gene_1703_tx_8 1 - 160813 163201 . 2 1392,474 0,1915 -chrIV 161605 163201 HC_gene_1703_tx_9 1 - 161605 163201 . 1 1597 0 -chrIV 161947 162998 HC_gene_1703_tx_10 1 - 161947 162998 . 1 1052 0 -chrIV 161947 163201 HC_gene_1703_tx_11 1 - 161947 163201 . 2 57,903 0,352 -chrIV 162653 163451 MC_gene_1101_tx_1 1 + 162653 163451 . 1 799 0 -chrIV 163373 163813 HC_gene_1704_tx_1 4 - 163373 163813 . 1 441 0 -chrIV 163373 163878 HC_gene_1704_tx_2 19 - 163373 163878 . 1 506 0 -chrIV 163373 164088 HC_gene_1704_tx_3 161 - 163373 164088 . 1 716 0 -chrIV 163457 164172 LC_gene_1102_tx_1 1 + 163457 164172 . 1 716 0 -chrIV 164194 164816 LC_gene_1705_tx_1 1 - 164194 164816 . 1 623 0 -chrIV 164240 164904 HC_gene_1103_tx_1 51 + 164240 164904 . 1 665 0 -chrIV 164240 164985 HC_gene_1103_tx_2 13 + 164240 164985 . 1 746 0 -chrIV 164338 164904 HC_gene_1103_tx_3 5 + 164338 164904 . 1 567 0 -chrIV 164338 164985 HC_gene_1103_tx_4 1 + 164338 164985 . 1 648 0 -chrIV 164537 164904 HC_gene_1103_tx_5 7 + 164537 164904 . 1 368 0 -chrIV 164831 165062 HC_gene_1706_tx_1 2 - 164831 165062 . 1 232 0 -chrIV 164831 167306 HC_gene_1706_tx_2 6 - 164831 167306 . 1 2476 0 -chrIV 167697 169183 HC_gene_1104_tx_1 28 + 167697 169183 . 1 1487 0 -chrIV 167697 169183 HC_gene_1104_tx_2 1 + 167697 169183 . 2 116,1324 0,163 -chrIV 167697 169183 HC_gene_1104_tx_3 1 + 167697 169183 . 2 312,873 0,614 -chrIV 167697 169304 HC_gene_1104_tx_4 1 + 167697 169304 . 2 251,1136 0,472 -chrIV 167697 169304 HC_gene_1104_tx_5 11 + 167697 169304 . 1 1608 0 -chrIV 167697 169304 HC_gene_1104_tx_6 1 + 167697 169304 . 2 767,793 0,815 -chrIV 167697 169304 HC_gene_1104_tx_7 1 + 167697 169304 . 2 140,1384 0,224 -chrIV 167697 169304 HC_gene_1104_tx_8 1 + 167697 169304 . 2 1100,459 0,1149 -chrIV 167697 169304 HC_gene_1104_tx_9 1 + 167697 169304 . 2 89,729 0,879 -chrIV 167926 169183 HC_gene_1104_tx_10 3 + 167926 169183 . 1 1258 0 -chrIV 167926 169304 HC_gene_1104_tx_11 5 + 167926 169304 . 1 1379 0 -chrIV 168057 169183 HC_gene_1104_tx_12 6 + 168057 169183 . 1 1127 0 -chrIV 168057 169304 HC_gene_1104_tx_13 6 + 168057 169304 . 1 1248 0 -chrIV 168188 169183 HC_gene_1104_tx_14 1 + 168188 169183 . 1 996 0 -chrIV 168188 169304 HC_gene_1104_tx_15 2 + 168188 169304 . 1 1117 0 -chrIV 168285 169183 HC_gene_1104_tx_16 19 + 168285 169183 . 1 899 0 -chrIV 168285 169304 HC_gene_1104_tx_17 11 + 168285 169304 . 1 1020 0 -chrIV 168521 169183 HC_gene_1104_tx_18 11 + 168521 169183 . 1 663 0 -chrIV 168521 169304 HC_gene_1104_tx_19 5 + 168521 169304 . 1 784 0 -chrIV 168617 169183 HC_gene_1104_tx_20 10 + 168617 169183 . 1 567 0 -chrIV 168617 169304 HC_gene_1104_tx_21 7 + 168617 169304 . 1 688 0 -chrIV 169048 169619 HC_gene_1707_tx_1 47 - 169048 169619 . 1 572 0 -chrIV 169048 169619 HC_gene_1707_tx_2 1 - 169048 169619 . 2 200,280 0,292 -chrIV 169772 170261 HC_gene_1708_tx_1 6 - 169772 170261 . 1 490 0 -chrIV 169772 170348 HC_gene_1708_tx_2 6 - 169772 170348 . 1 577 0 -chrIV 169772 170474 HC_gene_1708_tx_3 9 - 169772 170474 . 1 703 0 -chrIV 169772 170656 HC_gene_1708_tx_4 13 - 169772 170656 . 1 885 0 -chrIV 169772 170877 HC_gene_1708_tx_5 3 - 169772 170877 . 1 1106 0 -chrIV 169772 171161 HC_gene_1708_tx_7 3 - 169772 171161 . 1 1390 0 -chrIV 169772 171797 HC_gene_1708_tx_8 1 - 169772 171797 . 1 2026 0 -chrIV 169772 171963 HC_gene_1708_tx_9 3 - 169772 171963 . 1 2192 0 -chrIV 169772 172215 HC_gene_1708_tx_10 12 - 169772 172215 . 1 2444 0 -chrIV 169772 172215 HC_gene_1708_tx_11 1 - 169772 172215 . 2 1626,305 0,2139 -chrIV 169772 172215 HC_gene_1708_tx_12 1 - 169772 172215 . 2 86,2272 0,172 -chrIV 169772 172215 HC_gene_1708_tx_13 1 - 169772 172215 . 2 1129,1005 0,1439 -chrIV 169966 170261 HC_gene_1708_tx_20 2 - 169966 170261 . 1 296 0 -chrIV 169966 170348 HC_gene_1708_tx_21 1 - 169966 170348 . 1 383 0 -chrIV 169966 170474 HC_gene_1708_tx_22 3 - 169966 170474 . 1 509 0 -chrIV 169966 170656 HC_gene_1708_tx_23 1 - 169966 170656 . 1 691 0 -chrIV 169966 170877 HC_gene_1708_tx_6 2 - 169966 170877 . 1 912 0 -chrIV 169966 171797 HC_gene_1708_tx_14 1 - 169966 171797 . 1 1832 0 -chrIV 169966 172215 HC_gene_1708_tx_15 4 - 169966 172215 . 1 2250 0 -chrIV 170102 170348 HC_gene_1708_tx_25 1 - 170102 170348 . 1 247 0 -chrIV 170102 170656 HC_gene_1708_tx_24 1 - 170102 170656 . 1 555 0 -chrIV 170102 171797 HC_gene_1708_tx_16 2 - 170102 171797 . 1 1696 0 -chrIV 170102 172215 HC_gene_1708_tx_17 1 - 170102 172215 . 1 2114 0 -chrIV 170231 170474 HC_gene_1708_tx_26 1 - 170231 170474 . 1 244 0 -chrIV 170231 170656 HC_gene_1708_tx_27 1 - 170231 170656 . 1 426 0 -chrIV 170231 170747 HC_gene_1708_tx_28 1 - 170231 170747 . 1 517 0 -chrIV 170231 170800 HC_gene_1708_tx_29 1 - 170231 170800 . 1 570 0 -chrIV 170231 170877 HC_gene_1708_tx_30 1 - 170231 170877 . 1 647 0 -chrIV 170231 172203 HC_gene_1708_tx_18 1 - 170231 172203 . 1 1973 0 -chrIV 170231 172215 HC_gene_1708_tx_19 2 - 170231 172215 . 1 1985 0 -chrIV 172434 174174 MC_gene_1105_tx_1 1 + 172434 174174 . 1 1741 0 -chrIV 172737 174173 MC_gene_1105_tx_2 1 + 172737 174173 . 1 1437 0 -chrIV 173563 174280 MC_gene_1106_tx_1 1 + 173563 174280 . 1 718 0 -chrIV 173946 174347 HC_gene_1709_tx_1 27 - 173946 174347 . 1 402 0 -chrIV 173946 174416 HC_gene_1709_tx_2 18 - 173946 174416 . 1 471 0 -chrIV 173946 174606 HC_gene_1709_tx_3 346 - 173946 174606 . 1 661 0 -chrIV 174125 174347 HC_gene_1709_tx_4 4 - 174125 174347 . 1 223 0 -chrIV 174125 174606 HC_gene_1709_tx_5 92 - 174125 174606 . 1 482 0 -chrIV 174834 178197 HC_gene_1107_tx_1 2 + 174834 178197 . 1 3364 0 -chrIV 174834 178197 HC_gene_1107_tx_2 1 + 174834 178197 . 2 2548,770 0,2594 -chrIV 174834 178197 HC_gene_1107_tx_3 1 + 174834 178197 . 2 1737,1504 0,1860 -chrIV 175693 176237 LC_gene_1710_tx_1 1 - 175693 176237 . 1 545 0 -chrIV 176642 178197 HC_gene_1107_tx_4 16 + 176642 178197 . 1 1556 0 -chrIV 176642 178197 HC_gene_1107_tx_5 1 + 176642 178197 . 2 827,597 0,959 -chrIV 180000 181226 HC_gene_1108_tx_1 7 + 180000 181226 . 1 1227 0 -chrIV 180967 181655 HC_gene_1711_tx_1 2 - 180967 181655 . 1 689 0 -chrIV 180967 181726 HC_gene_1711_tx_2 1 - 180967 181726 . 1 760 0 -chrIV 180967 182392 HC_gene_1711_tx_5 1 - 180967 182392 . 1 1426 0 -chrIV 181044 181655 HC_gene_1711_tx_3 10 - 181044 181655 . 1 612 0 -chrIV 181044 181726 HC_gene_1711_tx_4 24 - 181044 181726 . 1 683 0 -chrIV 181044 182049 HC_gene_1711_tx_8 38 - 181044 182049 . 1 1006 0 -chrIV 181044 182392 HC_gene_1711_tx_6 17 - 181044 182392 . 1 1349 0 -chrIV 181044 182392 HC_gene_1711_tx_7 1 - 181044 182392 . 2 1044,226 0,1123 -chrIV 181044 182751 HC_gene_1711_tx_9 12 - 181044 182751 . 1 1708 0 -chrIV 181044 182838 HC_gene_1711_tx_10 6 - 181044 182838 . 1 1795 0 -chrIV 181044 182919 HC_gene_1711_tx_11 9 - 181044 182919 . 1 1876 0 -chrIV 181044 183040 HC_gene_1711_tx_12 92 - 181044 183040 . 1 1997 0 -chrIV 181044 183040 HC_gene_1711_tx_13 1 - 181044 183040 . 2 1315,596 0,1401 -chrIV 181044 183040 HC_gene_1711_tx_14 1 - 181044 183040 . 2 1107,255 0,1742 -chrIV 183247 184738 HC_gene_1109_tx_1 59 + 183247 184738 . 1 1492 0 -chrIV 183247 184738 HC_gene_1109_tx_2 1 + 183247 184738 . 2 1056,398 0,1094 -chrIV 183402 184738 HC_gene_1109_tx_3 10 + 183402 184738 . 1 1337 0 -chrIV 184894 186059 HC_gene_1110_tx_1 2 + 184894 186059 . 1 1166 0 -chrIV 184894 188016 HC_gene_1110_tx_2 2 + 184894 188016 . 1 3123 0 -chrIV 187729 188486 HC_gene_1712_tx_1 1 - 187729 188486 . 1 758 0 -chrIV 187729 188629 HC_gene_1712_tx_2 1 - 187729 188629 . 1 901 0 -chrIV 187871 188486 HC_gene_1712_tx_3 17 - 187871 188486 . 1 616 0 -chrIV 187871 188629 HC_gene_1712_tx_4 19 - 187871 188629 . 1 759 0 -chrIV 187871 189674 HC_gene_1713_tx_1 6 - 187871 189674 . 1 1804 0 -chrIV 187871 189789 HC_gene_1713_tx_2 4 - 187871 189789 . 1 1919 0 -chrIV 187871 189851 HC_gene_1713_tx_3 1 - 187871 189851 . 2 1783,49 0,1932 -chrIV 187871 190037 HC_gene_1713_tx_4 2 - 187871 190037 . 1 2167 0 -chrIV 187871 190343 HC_gene_1713_tx_5 1 - 187871 190343 . 2 2011,88 0,2385 -chrIV 187871 190343 HC_gene_1713_tx_6 3 - 187871 190343 . 1 2473 0 -chrIV 187871 190343 HC_gene_1713_tx_7 1 - 187871 190343 . 2 1221,585 0,1888 -chrIV 187871 190475 HC_gene_1713_tx_8 1 - 187871 190475 . 1 2605 0 -chrIV 187871 190606 HC_gene_1713_tx_9 1 - 187871 190606 . 2 1755,826 0,1910 -chrIV 187871 190617 HC_gene_1713_tx_10 26 - 187871 190617 . 1 2747 0 -chrIV 187871 190617 HC_gene_1713_tx_11 1 - 187871 190617 . 2 1187,1336 0,1411 -chrIV 187871 190617 HC_gene_1713_tx_12 1 - 187871 190617 . 2 1207,1405 0,1342 -chrIV 187871 190617 HC_gene_1713_tx_13 1 - 187871 190617 . 2 1261,1280 0,1467 -chrIV 190896 192408 HC_gene_1111_tx_1 1 + 190896 192408 . 2 803,656 0,857 -chrIV 190899 192408 HC_gene_1111_tx_2 1 + 190899 192408 . 2 788,671 0,839 -chrIV 190904 192408 HC_gene_1111_tx_3 1 + 190904 192408 . 2 242,1193 0,312 -chrIV 190910 192644 HC_gene_1111_tx_4 1 + 190910 192644 . 1 1735 0 -chrIV 190913 192408 HC_gene_1111_tx_5 204 + 190913 192408 . 1 1496 0 -chrIV 190913 192408 HC_gene_1111_tx_6 1 + 190913 192408 . 2 755,656 0,840 -chrIV 190913 192408 HC_gene_1111_tx_7 1 + 190913 192408 . 2 742,705 0,791 -chrIV 190913 192408 HC_gene_1111_tx_8 1 + 190913 192408 . 2 747,656 0,840 -chrIV 190913 192408 HC_gene_1111_tx_9 1 + 190913 192408 . 2 747,696 0,800 -chrIV 190913 192408 HC_gene_1111_tx_10 1 + 190913 192408 . 2 492,928 0,568 -chrIV 190913 192408 HC_gene_1111_tx_11 1 + 190913 192408 . 2 756,680 0,816 -chrIV 190913 192408 HC_gene_1111_tx_12 1 + 190913 192408 . 2 420,995 0,501 -chrIV 190913 192408 HC_gene_1111_tx_13 1 + 190913 192408 . 2 764,656 0,840 -chrIV 190913 192644 HC_gene_1111_tx_14 3 + 190913 192644 . 1 1732 0 -chrIV 191129 192408 HC_gene_1111_tx_15 1 + 191129 192408 . 2 246,899 0,381 -chrIV 191130 192408 HC_gene_1111_tx_16 38 + 191130 192408 . 1 1279 0 -chrIV 191130 192644 HC_gene_1111_tx_17 1 + 191130 192644 . 1 1515 0 -chrIV 191221 192408 HC_gene_1111_tx_18 7 + 191221 192408 . 1 1188 0 -chrIV 191221 192644 HC_gene_1111_tx_19 1 + 191221 192644 . 1 1424 0 -chrIV 191374 192408 HC_gene_1111_tx_20 40 + 191374 192408 . 1 1035 0 -chrIV 191374 192644 HC_gene_1111_tx_21 1 + 191374 192644 . 1 1271 0 -chrIV 191497 192408 HC_gene_1111_tx_22 14 + 191497 192408 . 1 912 0 -chrIV 191686 192408 HC_gene_1111_tx_23 44 + 191686 192408 . 1 723 0 -chrIV 191686 192644 HC_gene_1111_tx_24 1 + 191686 192644 . 1 959 0 -chrIV 191899 192396 LC_gene_1714_tx_1 1 - 191899 192396 . 1 498 0 -chrIV 191915 192408 HC_gene_1111_tx_25 42 + 191915 192408 . 1 494 0 -chrIV 191915 192644 HC_gene_1111_tx_26 2 + 191915 192644 . 1 730 0 -chrIV 192510 192697 MC_gene_1715_tx_1 1 - 192510 192697 . 1 188 0 -chrIV 192593 193708 HC_gene_1112_tx_1 1 + 192593 193708 . 1 1116 0 -chrIV 192593 194362 HC_gene_1112_tx_2 4 + 192593 194362 . 1 1770 0 -chrIV 192593 194519 HC_gene_1112_tx_3 9 + 192593 194519 . 1 1927 0 -chrIV 192593 194519 HC_gene_1112_tx_4 1 + 192593 194519 . 2 40,1273 0,654 -chrIV 194393 194954 HC_gene_1716_tx_1 64 - 194393 194954 . 1 562 0 -chrIV 194393 195330 HC_gene_1716_tx_2 17 - 194393 195330 . 1 938 0 -chrIV 194393 195382 HC_gene_1716_tx_3 8 - 194393 195382 . 1 990 0 -chrIV 194393 195725 HC_gene_1716_tx_4 1 - 194393 195725 . 2 496,744 0,589 -chrIV 194393 195725 HC_gene_1716_tx_5 1 - 194393 195725 . 2 974,229 0,1104 -chrIV 194393 195725 HC_gene_1716_tx_6 18 - 194393 195725 . 1 1333 0 -chrIV 194393 195908 HC_gene_1716_tx_7 18 - 194393 195908 . 1 1516 0 -chrIV 194393 195908 HC_gene_1716_tx_8 1 - 194393 195908 . 2 507,933 0,583 -chrIV 194393 196171 HC_gene_1716_tx_9 6 - 194393 196171 . 1 1779 0 -chrIV 194393 196171 HC_gene_1716_tx_10 1 - 194393 196171 . 2 744,729 0,1050 -chrIV 194393 196171 HC_gene_1716_tx_11 1 - 194393 196171 . 2 1020,138 0,1641 -chrIV 194393 196441 HC_gene_1716_tx_12 11 - 194393 196441 . 1 2049 0 -chrIV 194393 196441 HC_gene_1716_tx_13 1 - 194393 196441 . 2 878,1093 0,956 -chrIV 194393 196441 HC_gene_1716_tx_14 1 - 194393 196441 . 2 1433,484 0,1565 -chrIV 194393 196814 HC_gene_1716_tx_15 3 - 194393 196814 . 1 2422 0 -chrIV 194393 197083 HC_gene_1716_tx_16 1 - 194393 197083 . 1 2691 0 -chrIV 194393 197083 HC_gene_1716_tx_17 1 - 194393 197083 . 2 536,2071 0,620 -chrIV 194393 197151 HC_gene_1716_tx_18 3 - 194393 197151 . 1 2759 0 -chrIV 194393 198130 HC_gene_1716_tx_19 5 - 194393 198130 . 1 3738 0 -chrIV 194393 198130 HC_gene_1716_tx_20 1 - 194393 198130 . 2 753,2480 0,1258 -chrIV 194393 198430 HC_gene_1716_tx_21 21 - 194393 198430 . 1 4038 0 -chrIV 194393 198430 HC_gene_1716_tx_22 1 - 194393 198430 . 3 3062,603,165 0,3146,3873 -chrIV 194393 198430 HC_gene_1716_tx_23 1 - 194393 198430 . 2 1207,2730 0,1308 -chrIV 194393 198430 HC_gene_1716_tx_24 1 - 194393 198430 . 2 1696,2072 0,1966 -chrIV 198502 199768 HC_gene_1717_tx_1 6 - 198502 199768 . 1 1267 0 -chrIV 198502 199768 HC_gene_1717_tx_2 1 - 198502 199768 . 2 379,720 0,547 -chrIV 198569 199044 HC_gene_1717_tx_4 9 - 198569 199044 . 1 476 0 -chrIV 198569 199444 HC_gene_1717_tx_5 10 - 198569 199444 . 1 876 0 -chrIV 198569 199768 HC_gene_1717_tx_3 35 - 198569 199768 . 1 1200 0 -chrIV 198653 199133 LC_gene_1113_tx_1 1 + 198653 199133 . 1 481 0 -chrIV 199960 201704 HC_gene_1114_tx_1 144 + 199960 201704 . 1 1745 0 -chrIV 199960 201704 HC_gene_1114_tx_2 1 + 199960 201704 . 2 449,1186 0,559 -chrIV 199960 201704 HC_gene_1114_tx_3 1 + 199960 201704 . 2 777,893 0,852 -chrIV 199960 201704 HC_gene_1114_tx_4 1 + 199960 201704 . 2 190,1471 0,274 -chrIV 199960 201704 HC_gene_1114_tx_5 1 + 199960 201704 . 2 924,594 0,1151 -chrIV 199960 201704 HC_gene_1114_tx_6 1 + 199960 201704 . 2 1075,572 0,1173 -chrIV 199960 201845 HC_gene_1114_tx_7 6 + 199960 201845 . 1 1886 0 -chrIV 200336 201704 HC_gene_1114_tx_8 9 + 200336 201704 . 1 1369 0 -chrIV 200336 201845 HC_gene_1114_tx_9 1 + 200336 201845 . 2 693,742 0,768 -chrIV 200445 201704 HC_gene_1114_tx_10 19 + 200445 201704 . 1 1260 0 -chrIV 200445 201704 HC_gene_1114_tx_11 1 + 200445 201704 . 2 121,842 0,418 -chrIV 200521 201704 HC_gene_1114_tx_12 3 + 200521 201704 . 1 1184 0 -chrIV 200630 201704 HC_gene_1114_tx_13 21 + 200630 201704 . 1 1075 0 -chrIV 200630 201704 HC_gene_1114_tx_14 1 + 200630 201704 . 2 452,496 0,579 -chrIV 200699 201704 HC_gene_1114_tx_15 16 + 200699 201704 . 1 1006 0 -chrIV 200699 201845 HC_gene_1114_tx_16 1 + 200699 201845 . 1 1147 0 -chrIV 200975 201704 HC_gene_1114_tx_17 1 + 200975 201704 . 2 195,424 0,306 -chrIV 200975 201704 HC_gene_1114_tx_18 65 + 200975 201704 . 1 730 0 -chrIV 200975 201845 HC_gene_1114_tx_19 2 + 200975 201845 . 1 871 0 -chrIV 201589 202634 HC_gene_1718_tx_1 34 - 201589 202634 . 1 1046 0 -chrIV 201679 202634 HC_gene_1718_tx_2 20 - 201679 202634 . 1 956 0 -chrIV 201679 202634 HC_gene_1718_tx_3 1 - 201679 202634 . 2 67,841 0,115 -chrIV 202799 205375 HC_gene_1115_tx_1 23 + 202799 205375 . 1 2577 0 -chrIV 205130 205561 HC_gene_1719_tx_1 2 - 205130 205561 . 1 432 0 -chrIV 205130 205714 HC_gene_1719_tx_2 1 - 205130 205714 . 1 585 0 -chrIV 205243 205561 HC_gene_1719_tx_19 1 - 205243 205561 . 1 319 0 -chrIV 205243 205714 HC_gene_1719_tx_3 1 - 205243 205714 . 1 472 0 -chrIV 205245 205561 HC_gene_1719_tx_20 1 - 205245 205561 . 1 317 0 -chrIV 205247 205561 HC_gene_1719_tx_21 1 - 205247 205561 . 1 315 0 -chrIV 205248 205561 HC_gene_1719_tx_22 1 - 205248 205561 . 1 314 0 -chrIV 205249 205561 HC_gene_1719_tx_23 1 - 205249 205561 . 1 313 0 -chrIV 205250 205714 HC_gene_1719_tx_4 1 - 205250 205714 . 2 316,77 0,388 -chrIV 205250 206423 HC_gene_1720_tx_1 1 - 205250 206423 . 1 1174 0 -chrIV 205251 205714 HC_gene_1719_tx_5 1 - 205251 205714 . 1 464 0 -chrIV 205252 205561 HC_gene_1719_tx_24 1 - 205252 205561 . 1 310 0 -chrIV 205252 205940 HC_gene_1720_tx_4 1 - 205252 205940 . 1 689 0 -chrIV 205253 205561 HC_gene_1719_tx_25 1 - 205253 205561 . 1 309 0 -chrIV 205255 205561 HC_gene_1719_tx_26 3 - 205255 205561 . 1 307 0 -chrIV 205255 205714 HC_gene_1719_tx_6 2 - 205255 205714 . 1 460 0 -chrIV 205255 205940 HC_gene_1720_tx_5 1 - 205255 205940 . 1 686 0 -chrIV 205255 207798 HC_gene_1721_tx_1 1 - 205255 207798 . 1 2544 0 -chrIV 205256 205714 HC_gene_1719_tx_7 2 - 205256 205714 . 1 459 0 -chrIV 205256 205940 HC_gene_1720_tx_6 1 - 205256 205940 . 1 685 0 -chrIV 205256 211105 HC_gene_1721_tx_8 1 - 205256 211105 . 1 5850 0 -chrIV 205258 206423 HC_gene_1720_tx_2 1 - 205258 206423 . 1 1166 0 -chrIV 205258 208305 HC_gene_1721_tx_2 1 - 205258 208305 . 2 548,2332 0,716 -chrIV 205258 208679 HC_gene_1721_tx_3 1 - 205258 208679 . 1 3422 0 -chrIV 205260 208305 HC_gene_1721_tx_4 1 - 205260 208305 . 1 3046 0 -chrIV 205260 211105 HC_gene_1721_tx_9 1 - 205260 211105 . 1 5846 0 -chrIV 205264 205714 HC_gene_1719_tx_8 1 - 205264 205714 . 1 451 0 -chrIV 205265 205714 HC_gene_1719_tx_9 1 - 205265 205714 . 1 450 0 -chrIV 205269 205714 HC_gene_1719_tx_10 2 - 205269 205714 . 1 446 0 -chrIV 205269 205940 HC_gene_1720_tx_7 1 - 205269 205940 . 1 672 0 -chrIV 205269 208782 HC_gene_1721_tx_5 1 - 205269 208782 . 1 3514 0 -chrIV 205270 205561 HC_gene_1719_tx_27 1 - 205270 205561 . 1 292 0 -chrIV 205270 205714 HC_gene_1719_tx_11 11 - 205270 205714 . 1 445 0 -chrIV 205270 205940 HC_gene_1720_tx_8 1 - 205270 205940 . 2 412,190 0,481 -chrIV 205270 205940 HC_gene_1720_tx_9 2 - 205270 205940 . 1 671 0 -chrIV 205270 206423 HC_gene_1720_tx_3 1 - 205270 206423 . 2 300,450 0,704 -chrIV 205270 207798 HC_gene_1721_tx_6 1 - 205270 207798 . 1 2529 0 -chrIV 205271 205940 HC_gene_1720_tx_10 1 - 205271 205940 . 1 670 0 -chrIV 205273 205714 HC_gene_1719_tx_12 1 - 205273 205714 . 1 442 0 -chrIV 205273 205940 HC_gene_1720_tx_11 1 - 205273 205940 . 1 668 0 -chrIV 205274 205714 HC_gene_1719_tx_13 2 - 205274 205714 . 1 441 0 -chrIV 205274 209571 HC_gene_1721_tx_7 1 - 205274 209571 . 1 4298 0 -chrIV 205277 205561 HC_gene_1719_tx_28 2 - 205277 205561 . 1 285 0 -chrIV 205277 205714 HC_gene_1719_tx_14 2 - 205277 205714 . 1 438 0 -chrIV 205278 205714 HC_gene_1719_tx_15 1 - 205278 205714 . 1 437 0 -chrIV 205284 205714 HC_gene_1719_tx_16 3 - 205284 205714 . 1 431 0 -chrIV 205286 205714 HC_gene_1719_tx_17 1 - 205286 205714 . 1 429 0 -chrIV 205286 205940 HC_gene_1720_tx_12 1 - 205286 205940 . 1 655 0 -chrIV 205288 205714 HC_gene_1719_tx_18 1 - 205288 205714 . 1 427 0 -chrIV 207423 208143 HC_gene_1721_tx_10 1 - 207423 208143 . 1 721 0 -chrIV 209287 211105 HC_gene_1721_tx_11 2 - 209287 211105 . 1 1819 0 -chrIV 211229 212075 HC_gene_1722_tx_1 28 - 211229 212075 . 1 847 0 -chrIV 212250 212529 HC_gene_1116_tx_1 3 + 212250 212529 . 1 280 0 -chrIV 212374 214388 MC_gene_1723_tx_1 1 - 212374 214388 . 1 2015 0 -chrIV 212489 212848 MC_gene_1723_tx_2 1 - 212489 212848 . 1 360 0 -chrIV 213073 215730 HC_gene_1117_tx_1 1 + 213073 215730 . 1 2658 0 -chrIV 213174 215730 HC_gene_1117_tx_2 4 + 213174 215730 . 1 2557 0 -chrIV 213174 215788 HC_gene_1117_tx_3 1 + 213174 215788 . 1 2615 0 -chrIV 214394 215355 MC_gene_1724_tx_1 1 - 214394 215355 . 1 962 0 -chrIV 215650 217193 MC_gene_1725_tx_1 1 - 215650 217193 . 1 1544 0 -chrIV 215726 217196 MC_gene_1725_tx_2 1 - 215726 217196 . 1 1471 0 -chrIV 216102 217107 HC_gene_1118_tx_1 1 + 216102 217107 . 2 56,618 0,388 -chrIV 216102 217115 HC_gene_1118_tx_2 1 + 216102 217115 . 2 56,626 0,388 -chrIV 216102 217120 HC_gene_1118_tx_3 1 + 216102 217120 . 2 56,631 0,388 -chrIV 216102 217124 HC_gene_1118_tx_4 1 + 216102 217124 . 2 56,635 0,388 -chrIV 216102 217134 HC_gene_1118_tx_5 1 + 216102 217134 . 1 1033 0 -chrIV 216102 217135 HC_gene_1118_tx_6 1 + 216102 217135 . 1 1034 0 -chrIV 216102 217137 HC_gene_1118_tx_7 1 + 216102 217137 . 2 56,648 0,388 -chrIV 216102 217149 HC_gene_1118_tx_8 1 + 216102 217149 . 2 56,660 0,388 -chrIV 216102 217151 HC_gene_1118_tx_9 1 + 216102 217151 . 2 56,662 0,388 -chrIV 216102 217152 HC_gene_1118_tx_10 2 + 216102 217152 . 2 56,663 0,388 -chrIV 216102 217153 HC_gene_1118_tx_11 1 + 216102 217153 . 1 1052 0 -chrIV 216102 217154 HC_gene_1118_tx_12 1 + 216102 217154 . 2 56,665 0,388 -chrIV 216102 217154 HC_gene_1118_tx_13 1 + 216102 217154 . 2 34,671 0,382 -chrIV 216102 217228 HC_gene_1118_tx_14 366 + 216102 217228 . 2 56,739 0,388 -chrIV 216102 217228 HC_gene_1118_tx_15 1 + 216102 217228 . 3 56,551,90 0,388,1037 -chrIV 216102 217228 HC_gene_1118_tx_16 1 + 216102 217228 . 2 60,750 0,377 -chrIV 216102 217228 HC_gene_1118_tx_17 4 + 216102 217228 . 2 56,724 0,403 -chrIV 216102 217228 HC_gene_1118_tx_18 1 + 216102 217228 . 2 34,745 0,382 -chrIV 216102 217228 HC_gene_1118_tx_19 1 + 216102 217228 . 2 60,730 0,397 -chrIV 216102 217228 HC_gene_1118_tx_20 5 + 216102 217228 . 2 60,739 0,388 -chrIV 216102 217228 HC_gene_1118_tx_21 14 + 216102 217228 . 1 1127 0 -chrIV 216102 217228 HC_gene_1118_tx_22 1 + 216102 217228 . 2 56,766 0,361 -chrIV 216102 217228 HC_gene_1118_tx_23 1 + 216102 217228 . 2 60,727 0,400 -chrIV 216102 217228 HC_gene_1118_tx_24 1 + 216102 217228 . 2 273,739 0,388 -chrIV 216480 217117 HC_gene_1118_tx_25 1 + 216480 217117 . 1 638 0 -chrIV 216480 217134 HC_gene_1118_tx_26 2 + 216480 217134 . 1 655 0 -chrIV 216480 217138 HC_gene_1118_tx_27 1 + 216480 217138 . 1 659 0 -chrIV 216480 217139 HC_gene_1118_tx_28 1 + 216480 217139 . 1 660 0 -chrIV 216480 217149 HC_gene_1118_tx_29 1 + 216480 217149 . 1 670 0 -chrIV 216480 217150 HC_gene_1118_tx_30 1 + 216480 217150 . 1 671 0 -chrIV 216480 217228 HC_gene_1118_tx_31 257 + 216480 217228 . 1 749 0 -chrIV 216496 217228 HC_gene_1118_tx_32 1 + 216496 217228 . 2 294,376 0,357 -chrIV 216647 217119 HC_gene_1118_tx_33 1 + 216647 217119 . 1 473 0 -chrIV 216647 217228 HC_gene_1118_tx_34 53 + 216647 217228 . 1 582 0 -chrIV 216788 217135 HC_gene_1118_tx_35 1 + 216788 217135 . 1 348 0 -chrIV 216788 217146 HC_gene_1118_tx_36 1 + 216788 217146 . 1 359 0 -chrIV 216788 217154 HC_gene_1118_tx_37 1 + 216788 217154 . 1 367 0 -chrIV 216788 217228 HC_gene_1118_tx_38 151 + 216788 217228 . 1 441 0 -chrIV 217087 218150 MC_gene_1726_tx_1 1 - 217087 218150 . 1 1064 0 -chrIV 217566 218456 HC_gene_1119_tx_1 169 + 217566 218456 . 2 37,449 0,442 -chrIV 217566 218456 HC_gene_1119_tx_2 81 + 217566 218456 . 1 891 0 -chrIV 218000 218456 HC_gene_1119_tx_3 1736 + 218000 218456 . 1 457 0 -chrIV 218357 219334 HC_gene_1727_tx_1 13 - 218357 219334 . 1 978 0 -chrIV 218421 219143 HC_gene_1727_tx_4 4 - 218421 219143 . 1 723 0 -chrIV 218421 219334 HC_gene_1727_tx_2 205 - 218421 219334 . 1 914 0 -chrIV 218589 219143 HC_gene_1727_tx_5 6 - 218589 219143 . 1 555 0 -chrIV 218589 219334 HC_gene_1727_tx_3 109 - 218589 219334 . 1 746 0 -chrIV 219040 219759 HC_gene_1120_tx_1 1 + 219040 219759 . 1 720 0 -chrIV 219363 219759 HC_gene_1120_tx_2 5 + 219363 219759 . 1 397 0 -chrIV 219607 220208 HC_gene_1728_tx_1 16 - 219607 220208 . 1 602 0 -chrIV 219607 220786 HC_gene_1728_tx_2 16 - 219607 220786 . 1 1180 0 -chrIV 219607 220786 HC_gene_1728_tx_3 1 - 219607 220786 . 2 312,409 0,771 -chrIV 219607 221260 HC_gene_1728_tx_4 78 - 219607 221260 . 1 1654 0 -chrIV 219607 221260 HC_gene_1728_tx_5 1 - 219607 221260 . 2 574,1008 0,646 -chrIV 219607 221260 HC_gene_1728_tx_6 1 - 219607 221260 . 2 719,840 0,814 -chrIV 220894 221260 HC_gene_1728_tx_7 4 - 220894 221260 . 1 367 0 -chrIV 220967 221643 HC_gene_1121_tx_1 10 + 220967 221643 . 1 677 0 -chrIV 221491 221820 HC_gene_1729_tx_1 9401 - 221491 221820 . 1 330 0 -chrIV 222006 223840 HC_gene_1122_tx_1 6 + 222006 223840 . 1 1835 0 -chrIV 222270 223840 HC_gene_1122_tx_2 24 + 222270 223840 . 1 1571 0 -chrIV 222270 223840 HC_gene_1122_tx_3 1 + 222270 223840 . 2 882,630 0,941 -chrIV 222476 223840 HC_gene_1122_tx_4 10 + 222476 223840 . 1 1365 0 -chrIV 222555 223548 HC_gene_1122_tx_6 1 + 222555 223548 . 1 994 0 -chrIV 222555 223840 HC_gene_1122_tx_5 2 + 222555 223840 . 1 1286 0 -chrIV 222938 223840 HC_gene_1122_tx_7 8 + 222938 223840 . 1 903 0 -chrIV 224038 225055 HC_gene_1123_tx_1 1 + 224038 225055 . 1 1018 0 -chrIV 224038 226914 HC_gene_1123_tx_2 6 + 224038 226914 . 1 2877 0 -chrIV 224038 226914 HC_gene_1123_tx_3 1 + 224038 226914 . 2 2753,64 0,2813 -chrIV 224038 226914 HC_gene_1123_tx_4 1 + 224038 226914 . 2 2695,50 0,2827 -chrIV 224863 225244 HC_gene_1123_tx_5 1 + 224863 225244 . 1 382 0 -chrIV 224863 226914 HC_gene_1123_tx_6 1 + 224863 226914 . 1 2052 0 -chrIV 225668 226914 HC_gene_1123_tx_7 4 + 225668 226914 . 1 1247 0 -chrIV 226106 226914 HC_gene_1123_tx_8 12 + 226106 226914 . 1 809 0 -chrIV 226106 226914 HC_gene_1123_tx_9 1 + 226106 226914 . 2 691,64 0,745 -chrIV 226462 226914 HC_gene_1123_tx_10 19 + 226462 226914 . 1 453 0 -chrIV 226462 226914 HC_gene_1123_tx_11 1 + 226462 226914 . 2 329,79 0,374 -chrIV 226462 226914 HC_gene_1123_tx_12 1 + 226462 226914 . 2 349,54 0,399 -chrIV 226462 226914 HC_gene_1123_tx_13 1 + 226462 226914 . 2 335,54 0,399 -chrIV 226462 226914 HC_gene_1123_tx_14 1 + 226462 226914 . 2 349,58 0,395 -chrIV 226726 227096 MC_gene_1730_tx_1 1 - 226726 227096 . 1 371 0 -chrIV 227356 228767 HC_gene_1124_tx_1 315 + 227356 228767 . 1 1412 0 -chrIV 227356 228767 HC_gene_1124_tx_2 1 + 227356 228767 . 2 791,570 0,842 -chrIV 227356 228767 HC_gene_1124_tx_3 1 + 227356 228767 . 2 919,423 0,989 -chrIV 227356 228767 HC_gene_1124_tx_4 1 + 227356 228767 . 2 881,443 0,969 -chrIV 227356 229022 HC_gene_1124_tx_5 1 + 227356 229022 . 1 1667 0 -chrIV 228687 228887 HC_gene_1731_tx_1 2 - 228687 228887 . 1 201 0 -chrIV 229105 229586 HC_gene_1125_tx_1 316 + 229105 229586 . 1 482 0 -chrIV 229121 229461 MC_gene_1732_tx_1 1 - 229121 229461 . 1 341 0 -chrIV 229341 229586 HC_gene_1125_tx_2 38 + 229341 229586 . 1 246 0 -chrIV 229888 230625 HC_gene_1126_tx_1 3789 + 229888 230625 . 2 132,305 0,433 -chrIV 229888 230625 HC_gene_1126_tx_2 122 + 229888 230625 . 2 136,305 0,433 -chrIV 229888 230625 HC_gene_1126_tx_3 28 + 229888 230625 . 2 123,305 0,433 -chrIV 229888 230625 HC_gene_1126_tx_4 23 + 229888 230625 . 2 115,305 0,433 -chrIV 229888 230625 HC_gene_1126_tx_5 106 + 229888 230625 . 1 738 0 -chrIV 230330 230625 HC_gene_1126_tx_6 753 + 230330 230625 . 1 296 0 -chrIV 230554 232221 MC_gene_1733_tx_1 1 - 230554 232221 . 1 1668 0 -chrIV 230979 232346 HC_gene_1127_tx_1 11 + 230979 232346 . 1 1368 0 -chrIV 231212 232346 HC_gene_1127_tx_2 4 + 231212 232346 . 1 1135 0 -chrIV 232208 233775 MC_gene_1734_tx_1 1 - 232208 233775 . 1 1568 0 -chrIV 232594 233930 HC_gene_1128_tx_1 5 + 232594 233930 . 1 1337 0 -chrIV 232594 234051 HC_gene_1128_tx_2 113 + 232594 234051 . 1 1458 0 -chrIV 232594 234051 HC_gene_1128_tx_3 1 + 232594 234051 . 2 517,880 0,578 -chrIV 232594 234051 HC_gene_1128_tx_4 1 + 232594 234051 . 2 241,1125 0,333 -chrIV 232869 234051 HC_gene_1128_tx_5 7 + 232869 234051 . 1 1183 0 -chrIV 233978 234123 HC_gene_1735_tx_1 1 - 233978 234123 . 1 146 0 -chrIV 234618 235801 LC_gene_1736_tx_1 1 - 234618 235801 . 1 1184 0 -chrIV 234856 236021 HC_gene_1129_tx_1 44 + 234856 236021 . 1 1166 0 -chrIV 234856 236021 HC_gene_1129_tx_2 1 + 234856 236021 . 2 368,649 0,517 -chrIV 235756 236021 HC_gene_1129_tx_3 14 + 235756 236021 . 1 266 0 -chrIV 235931 236628 HC_gene_1737_tx_1 1 - 235931 236628 . 1 698 0 -chrIV 235931 236873 HC_gene_1737_tx_2 1 - 235931 236873 . 1 943 0 -chrIV 235931 238030 HC_gene_1737_tx_14 1 - 235931 238030 . 1 2100 0 -chrIV 236079 236450 HC_gene_1737_tx_46 105 - 236079 236450 . 1 372 0 -chrIV 236079 236628 HC_gene_1737_tx_3 150 - 236079 236628 . 1 550 0 -chrIV 236079 236628 HC_gene_1737_tx_4 1 - 236079 236628 . 2 169,323 0,227 -chrIV 236079 236720 HC_gene_1737_tx_5 1 - 236079 236720 . 2 429,103 0,539 -chrIV 236079 236760 HC_gene_1737_tx_6 1 - 236079 236760 . 2 145,312 0,370 -chrIV 236079 236873 HC_gene_1737_tx_7 1 - 236079 236873 . 2 318,394 0,401 -chrIV 236079 236873 HC_gene_1737_tx_8 166 - 236079 236873 . 1 795 0 -chrIV 236079 236873 HC_gene_1737_tx_9 1 - 236079 236873 . 2 404,220 0,575 -chrIV 236079 237032 HC_gene_1737_tx_10 35 - 236079 237032 . 1 954 0 -chrIV 236079 237032 HC_gene_1737_tx_11 1 - 236079 237032 . 2 438,478 0,476 -chrIV 236079 237097 HC_gene_1737_tx_12 64 - 236079 237097 . 1 1019 0 -chrIV 236079 237097 HC_gene_1737_tx_13 1 - 236079 237097 . 2 404,513 0,506 -chrIV 236079 237410 HC_gene_1737_tx_15 20 - 236079 237410 . 1 1332 0 -chrIV 236079 237461 HC_gene_1737_tx_16 35 - 236079 237461 . 1 1383 0 -chrIV 236079 237559 HC_gene_1737_tx_17 25 - 236079 237559 . 1 1481 0 -chrIV 236079 237559 HC_gene_1737_tx_18 1 - 236079 237559 . 2 958,255 0,1226 -chrIV 236079 237786 HC_gene_1737_tx_19 7 - 236079 237786 . 1 1708 0 -chrIV 236079 237845 HC_gene_1737_tx_20 36 - 236079 237845 . 1 1767 0 -chrIV 236079 237845 HC_gene_1737_tx_21 1 - 236079 237845 . 2 845,880 0,887 -chrIV 236079 237845 HC_gene_1737_tx_22 1 - 236079 237845 . 2 1402,247 0,1520 -chrIV 236079 237914 HC_gene_1737_tx_23 8 - 236079 237914 . 1 1836 0 -chrIV 236079 238030 HC_gene_1737_tx_24 41 - 236079 238030 . 1 1952 0 -chrIV 236079 238030 HC_gene_1737_tx_25 1 - 236079 238030 . 2 884,993 0,959 -chrIV 236079 238030 HC_gene_1737_tx_26 1 - 236079 238030 . 2 888,984 0,968 -chrIV 236079 238030 HC_gene_1737_tx_27 1 - 236079 238030 . 2 737,1112 0,840 -chrIV 236079 238030 HC_gene_1737_tx_28 1 - 236079 238030 . 2 1163,716 0,1236 -chrIV 236079 238075 HC_gene_1737_tx_29 1 - 236079 238075 . 2 1192,307 0,1690 -chrIV 236079 238194 HC_gene_1737_tx_30 16 - 236079 238194 . 1 2116 0 -chrIV 236079 238261 HC_gene_1737_tx_31 14 - 236079 238261 . 1 2183 0 -chrIV 236079 238261 HC_gene_1737_tx_32 1 - 236079 238261 . 2 878,1147 0,1036 -chrIV 236079 238343 HC_gene_1737_tx_33 20 - 236079 238343 . 1 2265 0 -chrIV 236079 238343 HC_gene_1737_tx_34 1 - 236079 238343 . 2 1028,1183 0,1082 -chrIV 236079 238706 HC_gene_1737_tx_35 176 - 236079 238706 . 1 2628 0 -chrIV 236079 238706 HC_gene_1737_tx_36 1 - 236079 238706 . 2 1144,1410 0,1218 -chrIV 236079 238706 HC_gene_1737_tx_37 1 - 236079 238706 . 2 1637,672 0,1956 -chrIV 236079 238706 HC_gene_1737_tx_38 1 - 236079 238706 . 2 1906,628 0,2000 -chrIV 236079 238706 HC_gene_1737_tx_39 1 - 236079 238706 . 2 1984,567 0,2061 -chrIV 236079 238706 HC_gene_1737_tx_40 1 - 236079 238706 . 2 2356,114 0,2514 -chrIV 236079 238706 HC_gene_1737_tx_41 1 - 236079 238706 . 2 1158,1374 0,1254 -chrIV 236079 238706 HC_gene_1737_tx_42 1 - 236079 238706 . 2 1028,1536 0,1092 -chrIV 236079 238706 HC_gene_1737_tx_43 1 - 236079 238706 . 2 1109,1465 0,1163 -chrIV 236079 238706 HC_gene_1737_tx_44 1 - 236079 238706 . 2 1144,1392 0,1236 -chrIV 236079 238706 HC_gene_1737_tx_45 1 - 236079 238706 . 2 1158,1392 0,1236 -chrIV 236523 237461 HC_gene_1737_tx_47 1 - 236523 237461 . 1 939 0 -chrIV 238901 239291 HC_gene_1738_tx_1 58 - 238901 239291 . 1 391 0 -chrIV 238901 239396 HC_gene_1738_tx_2 76 - 238901 239396 . 1 496 0 -chrIV 238901 239587 HC_gene_1738_tx_3 374 - 238901 239587 . 2 498,78 0,609 -chrIV 238901 239587 HC_gene_1738_tx_4 22 - 238901 239587 . 1 687 0 -chrIV 238901 239752 HC_gene_1738_tx_5 27 - 238901 239752 . 1 852 0 -chrIV 238901 239752 HC_gene_1738_tx_6 23 - 238901 239752 . 2 498,243 0,609 -chrIV 238937 239528 MC_gene_1130_tx_1 1 + 238937 239528 . 1 592 0 -chrIV 239393 239737 HC_gene_1739_tx_1 1 - 239393 239737 . 1 345 0 -chrIV 239395 239737 HC_gene_1739_tx_2 1 - 239395 239737 . 1 343 0 -chrIV 239396 239799 HC_gene_1739_tx_3 1 - 239396 239799 . 1 404 0 -chrIV 239402 239752 HC_gene_1739_tx_4 3 - 239402 239752 . 1 351 0 -chrIV 239405 239752 HC_gene_1739_tx_5 1 - 239405 239752 . 1 348 0 -chrIV 239857 241270 HC_gene_1131_tx_1 1 + 239857 241270 . 1 1414 0 -chrIV 240211 241270 HC_gene_1131_tx_2 1 + 240211 241270 . 1 1060 0 -chrIV 240214 241270 HC_gene_1131_tx_3 281 + 240214 241270 . 1 1057 0 -chrIV 240214 241270 HC_gene_1131_tx_4 1 + 240214 241270 . 2 333,574 0,483 -chrIV 240214 241270 HC_gene_1131_tx_5 1 + 240214 241270 . 2 573,384 0,673 -chrIV 240223 241270 HC_gene_1131_tx_6 1 + 240223 241270 . 1 1048 0 -chrIV 240234 241270 HC_gene_1131_tx_7 1 + 240234 241270 . 1 1037 0 -chrIV 240248 241270 HC_gene_1131_tx_8 1 + 240248 241270 . 1 1023 0 -chrIV 240269 241270 HC_gene_1131_tx_9 2 + 240269 241270 . 1 1002 0 -chrIV 240273 241270 HC_gene_1131_tx_10 1 + 240273 241270 . 1 998 0 -chrIV 240417 241270 HC_gene_1131_tx_11 22 + 240417 241270 . 1 854 0 -chrIV 240561 241270 HC_gene_1131_tx_12 11 + 240561 241270 . 1 710 0 -chrIV 240654 241270 HC_gene_1131_tx_13 102 + 240654 241270 . 1 617 0 -chrIV 240804 241270 HC_gene_1131_tx_14 1 + 240804 241270 . 1 467 0 -chrIV 240815 241270 HC_gene_1131_tx_15 1 + 240815 241270 . 1 456 0 -chrIV 241015 241270 HC_gene_1131_tx_16 28 + 241015 241270 . 1 256 0 -chrIV 241123 242068 HC_gene_1740_tx_1 2 - 241123 242068 . 1 946 0 -chrIV 241277 242331 HC_gene_1132_tx_1 1 + 241277 242331 . 1 1055 0 -chrIV 241277 242332 HC_gene_1132_tx_2 1 + 241277 242332 . 1 1056 0 -chrIV 241397 242330 HC_gene_1132_tx_3 1 + 241397 242330 . 1 934 0 -chrIV 241404 242331 HC_gene_1132_tx_4 17 + 241404 242331 . 1 928 0 -chrIV 241404 242332 HC_gene_1132_tx_5 14 + 241404 242332 . 1 929 0 -chrIV 241404 242476 HC_gene_1132_tx_6 1 + 241404 242476 . 1 1073 0 -chrIV 241571 242331 HC_gene_1132_tx_7 1 + 241571 242331 . 1 761 0 -chrIV 241571 242332 HC_gene_1132_tx_8 3 + 241571 242332 . 1 762 0 -chrIV 241990 242331 HC_gene_1132_tx_9 4 + 241990 242331 . 1 342 0 -chrIV 242311 245065 HC_gene_1133_tx_1 20 + 242311 245065 . 1 2755 0 -chrIV 242311 245065 HC_gene_1133_tx_2 1 + 242311 245065 . 2 2185,508 0,2247 -chrIV 242311 245065 HC_gene_1133_tx_3 1 + 242311 245065 . 2 963,1673 0,1082 -chrIV 242843 245065 HC_gene_1133_tx_4 1 + 242843 245065 . 1 2223 0 -chrIV 242930 245065 HC_gene_1133_tx_5 2 + 242930 245065 . 1 2136 0 -chrIV 243003 243958 HC_gene_1133_tx_7 1 + 243003 243958 . 1 956 0 -chrIV 243003 245065 HC_gene_1133_tx_6 4 + 243003 245065 . 1 2063 0 -chrIV 243785 245065 HC_gene_1133_tx_8 8 + 243785 245065 . 1 1281 0 -chrIV 243907 245065 HC_gene_1133_tx_9 13 + 243907 245065 . 1 1159 0 -chrIV 244163 245065 HC_gene_1133_tx_10 10 + 244163 245065 . 1 903 0 -chrIV 244248 245065 HC_gene_1133_tx_11 20 + 244248 245065 . 1 818 0 -chrIV 244669 245065 HC_gene_1133_tx_12 41 + 244669 245065 . 1 397 0 -chrIV 244931 245370 HC_gene_1741_tx_1 14 - 244931 245370 . 1 440 0 -chrIV 244931 245433 HC_gene_1741_tx_2 28 - 244931 245433 . 1 503 0 -chrIV 244931 245609 HC_gene_1741_tx_3 228 - 244931 245609 . 1 679 0 -chrIV 245810 246154 LC_gene_1742_tx_1 1 - 245810 246154 . 1 345 0 -chrIV 245836 246603 HC_gene_1134_tx_1 135 + 245836 246603 . 1 768 0 -chrIV 245973 246603 HC_gene_1134_tx_2 20 + 245973 246603 . 1 631 0 -chrIV 246527 246794 HC_gene_1743_tx_1 2 - 246527 246794 . 1 268 0 -chrIV 246527 247451 HC_gene_1743_tx_2 7 - 246527 247451 . 1 925 0 -chrIV 246527 247785 HC_gene_1743_tx_4 26 - 246527 247785 . 1 1259 0 -chrIV 246623 246794 HC_gene_1743_tx_6 1 - 246623 246794 . 1 172 0 -chrIV 246623 247451 HC_gene_1743_tx_3 2 - 246623 247451 . 1 829 0 -chrIV 246623 247785 HC_gene_1743_tx_5 6 - 246623 247785 . 1 1163 0 -chrIV 248239 248872 LC_gene_1744_tx_1 1 - 248239 248872 . 1 634 0 -chrIV 248283 248552 HC_gene_1135_tx_1 2 + 248283 248552 . 1 270 0 -chrIV 248283 251304 HC_gene_1135_tx_2 1 + 248283 251304 . 1 3022 0 -chrIV 248283 251391 HC_gene_1135_tx_3 8 + 248283 251391 . 1 3109 0 -chrIV 248283 251391 HC_gene_1135_tx_4 1 + 248283 251391 . 2 2138,890 0,2219 -chrIV 248558 251391 HC_gene_1135_tx_5 1 + 248558 251391 . 1 2834 0 -chrIV 248929 251113 LC_gene_1745_tx_1 1 - 248929 251113 . 1 2185 0 -chrIV 251528 253846 HC_gene_1136_tx_1 1 + 251528 253846 . 2 1145,1124 0,1195 -chrIV 251528 253846 HC_gene_1136_tx_2 15 + 251528 253846 . 1 2319 0 -chrIV 251528 253993 HC_gene_1136_tx_3 1 + 251528 253993 . 1 2466 0 -chrIV 251872 253846 HC_gene_1136_tx_4 3 + 251872 253846 . 1 1975 0 -chrIV 252782 253846 HC_gene_1136_tx_5 7 + 252782 253846 . 1 1065 0 -chrIV 253902 254636 HC_gene_1746_tx_1 14 - 253902 254636 . 1 735 0 -chrIV 253902 254776 HC_gene_1746_tx_2 3 - 253902 254776 . 1 875 0 -chrIV 253902 254962 HC_gene_1746_tx_3 4 - 253902 254962 . 1 1061 0 -chrIV 253902 255068 HC_gene_1746_tx_4 2 - 253902 255068 . 1 1167 0 -chrIV 253902 255169 HC_gene_1746_tx_5 12 - 253902 255169 . 2 1073,125 0,1143 -chrIV 253902 255169 HC_gene_1746_tx_6 15 - 253902 255169 . 1 1268 0 -chrIV 253902 255169 HC_gene_1746_tx_7 1 - 253902 255169 . 2 1054,125 0,1143 -chrIV 253902 255169 HC_gene_1746_tx_8 1 - 253902 255169 . 2 1054,129 0,1139 -chrIV 253902 255333 HC_gene_1746_tx_9 2 - 253902 255333 . 1 1432 0 -chrIV 254181 254956 HC_gene_1137_tx_1 1 + 254181 254956 . 1 776 0 -chrIV 254181 255077 HC_gene_1137_tx_2 2 + 254181 255077 . 1 897 0 -chrIV 255560 256379 LC_gene_1747_tx_1 1 - 255560 256379 . 1 820 0 -chrIV 255625 256587 LC_gene_1138_tx_1 1 + 255625 256587 . 1 963 0 -chrIV 256512 258399 HC_gene_1748_tx_1 2 - 256512 258399 . 1 1888 0 -chrIV 256512 258618 HC_gene_1748_tx_2 11 - 256512 258618 . 1 2107 0 -chrIV 258834 263335 HC_gene_1139_tx_1 3 + 258834 263335 . 1 4502 0 -chrIV 262814 263335 HC_gene_1139_tx_2 14 + 262814 263335 . 1 522 0 -chrIV 263148 264180 HC_gene_1749_tx_1 9 - 263148 264180 . 1 1033 0 -chrIV 263246 264180 HC_gene_1749_tx_2 137 - 263246 264180 . 1 935 0 -chrIV 264322 264598 HC_gene_1750_tx_1 11 - 264322 264598 . 1 277 0 -chrIV 264322 264793 HC_gene_1750_tx_2 25 - 264322 264793 . 1 472 0 -chrIV 264322 265022 HC_gene_1750_tx_3 95 - 264322 265022 . 1 701 0 -chrIV 264322 265022 HC_gene_1750_tx_4 1 - 264322 265022 . 2 394,170 0,531 -chrIV 264322 265351 HC_gene_1750_tx_5 3 - 264322 265351 . 1 1030 0 -chrIV 264322 267190 HC_gene_1750_tx_6 1 - 264322 267190 . 1 2869 0 -chrIV 264322 267544 HC_gene_1750_tx_7 1 - 264322 267544 . 1 3223 0 -chrIV 264416 265077 HC_gene_1140_tx_1 2 + 264416 265077 . 1 662 0 -chrIV 267670 268754 HC_gene_1141_tx_1 1 + 267670 268754 . 2 56,948 0,137 -chrIV 267674 267860 MC_gene_1751_tx_1 1 - 267674 267860 . 1 187 0 -chrIV 267675 268754 HC_gene_1141_tx_2 1 + 267675 268754 . 2 51,948 0,132 -chrIV 267678 268754 HC_gene_1141_tx_3 1 + 267678 268754 . 2 48,948 0,129 -chrIV 267681 268754 HC_gene_1141_tx_4 2 + 267681 268754 . 2 45,948 0,126 -chrIV 267686 268754 HC_gene_1141_tx_5 1 + 267686 268754 . 2 40,948 0,121 -chrIV 267687 268754 HC_gene_1141_tx_6 1 + 267687 268754 . 2 39,948 0,120 -chrIV 267692 268754 HC_gene_1141_tx_7 1 + 267692 268754 . 2 34,948 0,115 -chrIV 267709 268754 HC_gene_1141_tx_8 32 + 267709 268754 . 1 1046 0 -chrIV 268125 268754 HC_gene_1141_tx_9 4 + 268125 268754 . 1 630 0 -chrIV 268145 268789 LC_gene_1752_tx_1 1 - 268145 268789 . 1 645 0 -chrIV 268899 270091 HC_gene_1142_tx_1 6 + 268899 270091 . 1 1193 0 -chrIV 268899 270091 HC_gene_1142_tx_2 1 + 268899 270091 . 2 772,348 0,845 -chrIV 268899 270091 HC_gene_1142_tx_3 1 + 268899 270091 . 2 732,372 0,821 -chrIV 268899 270091 HC_gene_1142_tx_4 1 + 268899 270091 . 2 216,846 0,347 -chrIV 268998 269451 LC_gene_1753_tx_1 1 - 268998 269451 . 1 454 0 -chrIV 269085 270091 HC_gene_1142_tx_5 13 + 269085 270091 . 1 1007 0 -chrIV 269190 270091 HC_gene_1142_tx_6 1 + 269190 270091 . 1 902 0 -chrIV 269292 270091 HC_gene_1142_tx_7 5 + 269292 270091 . 1 800 0 -chrIV 269366 270091 HC_gene_1142_tx_8 3 + 269366 270091 . 1 726 0 -chrIV 269455 270091 HC_gene_1142_tx_9 7 + 269455 270091 . 1 637 0 -chrIV 269564 270091 HC_gene_1142_tx_10 1 + 269564 270091 . 1 528 0 -chrIV 269972 271966 HC_gene_1754_tx_1 4 - 269972 271966 . 1 1995 0 -chrIV 272196 273714 HC_gene_1143_tx_1 1 + 272196 273714 . 1 1519 0 -chrIV 272352 273352 HC_gene_1143_tx_3 1 + 272352 273352 . 1 1001 0 -chrIV 272352 273714 HC_gene_1143_tx_2 10 + 272352 273714 . 1 1363 0 -chrIV 273286 274896 HC_gene_1755_tx_1 1 - 273286 274896 . 1 1611 0 -chrIV 273570 274896 HC_gene_1755_tx_2 3 - 273570 274896 . 1 1327 0 -chrIV 274525 275159 LC_gene_1144_tx_1 1 + 274525 275159 . 1 635 0 -chrIV 274927 276645 HC_gene_1756_tx_1 8 - 274927 276645 . 1 1719 0 -chrIV 275030 275972 HC_gene_1756_tx_3 3 - 275030 275972 . 1 943 0 -chrIV 275030 276208 HC_gene_1756_tx_4 7 - 275030 276208 . 1 1179 0 -chrIV 275030 276645 HC_gene_1756_tx_2 37 - 275030 276645 . 1 1616 0 -chrIV 276790 280277 HC_gene_1145_tx_1 5 + 276790 280277 . 1 3488 0 -chrIV 280030 280277 HC_gene_1145_tx_2 4 + 280030 280277 . 1 248 0 -chrIV 280163 281862 HC_gene_1757_tx_1 9 - 280163 281862 . 1 1700 0 -chrIV 280163 281862 HC_gene_1757_tx_2 1 - 280163 281862 . 2 692,950 0,750 -chrIV 282044 282516 HC_gene_1758_tx_1 57 - 282044 282516 . 1 473 0 -chrIV 282044 282707 HC_gene_1758_tx_2 20 - 282044 282707 . 1 664 0 -chrIV 282044 282836 HC_gene_1758_tx_3 49 - 282044 282836 . 1 793 0 -chrIV 282044 282975 HC_gene_1758_tx_4 14 - 282044 282975 . 1 932 0 -chrIV 282044 283094 HC_gene_1758_tx_5 34 - 282044 283094 . 1 1051 0 -chrIV 282044 283213 HC_gene_1758_tx_6 278 - 282044 283213 . 1 1170 0 -chrIV 283361 284533 HC_gene_1146_tx_1 115 + 283361 284533 . 1 1173 0 -chrIV 283594 284533 HC_gene_1146_tx_2 20 + 283594 284533 . 1 940 0 -chrIV 283771 284533 HC_gene_1146_tx_3 30 + 283771 284533 . 1 763 0 -chrIV 283854 284533 HC_gene_1146_tx_4 8 + 283854 284533 . 1 680 0 -chrIV 283906 284533 HC_gene_1146_tx_5 9 + 283906 284533 . 1 628 0 -chrIV 284033 284533 HC_gene_1146_tx_6 21 + 284033 284533 . 1 501 0 -chrIV 284439 284944 HC_gene_1759_tx_1 12 - 284439 284944 . 1 506 0 -chrIV 284439 285176 HC_gene_1759_tx_2 27 - 284439 285176 . 1 738 0 -chrIV 285293 285716 HC_gene_1760_tx_1 63 - 285293 285716 . 1 424 0 -chrIV 285293 286029 HC_gene_1760_tx_2 32 - 285293 286029 . 1 737 0 -chrIV 285293 286728 HC_gene_1760_tx_3 196 - 285293 286728 . 1 1436 0 -chrIV 285293 286728 HC_gene_1760_tx_4 1 - 285293 286728 . 2 983,232 0,1204 -chrIV 285293 286728 HC_gene_1760_tx_5 1 - 285293 286728 . 2 638,646 0,790 -chrIV 285293 286728 HC_gene_1760_tx_6 1 - 285293 286728 . 2 92,1287 0,149 -chrIV 285293 286728 HC_gene_1760_tx_7 1 - 285293 286728 . 2 871,403 0,1033 -chrIV 287029 289629 HC_gene_1147_tx_1 37 + 287029 289629 . 1 2601 0 -chrIV 287029 289629 HC_gene_1147_tx_2 1 + 287029 289629 . 2 1148,1309 0,1292 -chrIV 287029 289629 HC_gene_1147_tx_3 1 + 287029 289629 . 2 658,1852 0,749 -chrIV 287029 289629 HC_gene_1147_tx_4 1 + 287029 289629 . 2 663,1817 0,784 -chrIV 287029 289714 HC_gene_1147_tx_5 1 + 287029 289714 . 1 2686 0 -chrIV 287331 289629 HC_gene_1147_tx_6 1 + 287331 289629 . 2 126,1378 0,921 -chrIV 287331 289629 HC_gene_1147_tx_7 3 + 287331 289629 . 1 2299 0 -chrIV 287331 289714 HC_gene_1147_tx_8 1 + 287331 289714 . 1 2384 0 -chrIV 287493 289629 HC_gene_1147_tx_9 5 + 287493 289629 . 1 2137 0 -chrIV 287493 289629 HC_gene_1147_tx_10 1 + 287493 289629 . 2 926,1125 0,1012 -chrIV 288085 289629 HC_gene_1147_tx_11 20 + 288085 289629 . 1 1545 0 -chrIV 288335 289629 HC_gene_1147_tx_12 15 + 288335 289629 . 1 1295 0 -chrIV 288527 289629 HC_gene_1147_tx_13 6 + 288527 289629 . 1 1103 0 -chrIV 288835 289629 HC_gene_1147_tx_14 13 + 288835 289629 . 1 795 0 -chrIV 288835 289714 HC_gene_1147_tx_15 1 + 288835 289714 . 1 880 0 -chrIV 289122 289629 HC_gene_1147_tx_16 31 + 289122 289629 . 1 508 0 -chrIV 289355 289629 HC_gene_1147_tx_17 8 + 289355 289629 . 1 275 0 -chrIV 289758 290353 LC_gene_1761_tx_1 1 - 289758 290353 . 1 596 0 -chrIV 289879 292280 HC_gene_1148_tx_1 1 + 289879 292280 . 1 2402 0 -chrIV 289879 292428 HC_gene_1148_tx_2 12 + 289879 292428 . 1 2550 0 -chrIV 291840 292280 HC_gene_1148_tx_3 1 + 291840 292280 . 1 441 0 -chrIV 291840 292428 HC_gene_1148_tx_4 8 + 291840 292428 . 1 589 0 -chrIV 292030 292476 LC_gene_1762_tx_1 1 - 292030 292476 . 1 447 0 -chrIV 292758 293417 HC_gene_1149_tx_1 225 + 292758 293417 . 1 660 0 -chrIV 292914 293417 HC_gene_1149_tx_2 53 + 292914 293417 . 1 504 0 -chrIV 293003 293417 HC_gene_1149_tx_3 20 + 293003 293417 . 1 415 0 -chrIV 293289 293937 HC_gene_1763_tx_1 1 - 293289 293937 . 1 649 0 -chrIV 293289 294327 HC_gene_1763_tx_2 3 - 293289 294327 . 1 1039 0 -chrIV 293289 294854 HC_gene_1763_tx_3 13 - 293289 294854 . 1 1566 0 -chrIV 294822 296203 HC_gene_1764_tx_1 1 - 294822 296203 . 1 1382 0 -chrIV 294822 296318 HC_gene_1764_tx_2 1 - 294822 296318 . 1 1497 0 -chrIV 294822 296344 HC_gene_1764_tx_3 1 - 294822 296344 . 1 1523 0 -chrIV 294979 296203 HC_gene_1764_tx_4 3 - 294979 296203 . 1 1225 0 -chrIV 294979 296359 HC_gene_1764_tx_5 15 - 294979 296359 . 1 1381 0 -chrIV 294979 296359 HC_gene_1764_tx_6 1 - 294979 296359 . 2 709,632 0,749 -chrIV 294979 296512 HC_gene_1764_tx_7 1 - 294979 296512 . 1 1534 0 -chrIV 294980 295549 MC_gene_1150_tx_1 1 + 294980 295549 . 1 570 0 -chrIV 296526 298350 HC_gene_1151_tx_1 19 + 296526 298350 . 1 1825 0 -chrIV 296689 297321 HC_gene_1151_tx_3 1 + 296689 297321 . 1 633 0 -chrIV 296689 297438 HC_gene_1151_tx_4 1 + 296689 297438 . 1 750 0 -chrIV 296689 298350 HC_gene_1151_tx_2 6 + 296689 298350 . 1 1662 0 -chrIV 298262 299086 HC_gene_1765_tx_1 6 - 298262 299086 . 1 825 0 -chrIV 298262 299940 HC_gene_1765_tx_3 13 - 298262 299940 . 1 1679 0 -chrIV 298262 300022 HC_gene_1765_tx_4 1 - 298262 300022 . 1 1761 0 -chrIV 298262 300142 HC_gene_1765_tx_5 11 - 298262 300142 . 1 1881 0 -chrIV 298262 300142 HC_gene_1765_tx_6 1 - 298262 300142 . 2 729,1109 0,772 -chrIV 298262 300142 HC_gene_1765_tx_7 1 - 298262 300142 . 2 1497,308 0,1573 -chrIV 298262 301016 HC_gene_1765_tx_10 2 - 298262 301016 . 1 2755 0 -chrIV 298262 301258 HC_gene_1765_tx_11 1 - 298262 301258 . 2 1836,1116 0,1881 -chrIV 298262 301258 HC_gene_1765_tx_12 1 - 298262 301258 . 1 2997 0 -chrIV 298324 299086 HC_gene_1765_tx_2 1 - 298324 299086 . 1 763 0 -chrIV 298324 299940 HC_gene_1765_tx_8 3 - 298324 299940 . 1 1617 0 -chrIV 298324 300142 HC_gene_1765_tx_9 5 - 298324 300142 . 1 1819 0 -chrIV 301398 302137 LC_gene_1766_tx_1 1 - 301398 302137 . 1 740 0 -chrIV 301411 302313 HC_gene_1152_tx_1 107 + 301411 302313 . 1 903 0 -chrIV 301411 302431 HC_gene_1152_tx_2 19 + 301411 302431 . 1 1021 0 -chrIV 301610 302313 HC_gene_1152_tx_3 15 + 301610 302313 . 1 704 0 -chrIV 301610 302431 HC_gene_1152_tx_4 4 + 301610 302431 . 1 822 0 -chrIV 301844 302313 HC_gene_1152_tx_5 13 + 301844 302313 . 1 470 0 -chrIV 301844 302431 HC_gene_1152_tx_6 5 + 301844 302431 . 1 588 0 -chrIV 301939 302313 HC_gene_1152_tx_8 10 + 301939 302313 . 1 375 0 -chrIV 301939 302431 HC_gene_1152_tx_7 3 + 301939 302431 . 1 493 0 -chrIV 302105 302313 HC_gene_1152_tx_9 8 + 302105 302313 . 1 209 0 -chrIV 302105 302431 HC_gene_1152_tx_10 4 + 302105 302431 . 1 327 0 -chrIV 302216 302607 HC_gene_1767_tx_1 3 - 302216 302607 . 1 392 0 -chrIV 302216 302685 HC_gene_1767_tx_2 1 - 302216 302685 . 1 470 0 -chrIV 302216 302688 HC_gene_1767_tx_3 2 - 302216 302688 . 1 473 0 -chrIV 302216 302690 HC_gene_1767_tx_4 1 - 302216 302690 . 1 475 0 -chrIV 302216 302693 HC_gene_1767_tx_5 2 - 302216 302693 . 1 478 0 -chrIV 302216 302694 HC_gene_1767_tx_6 1 - 302216 302694 . 1 479 0 -chrIV 302216 302698 HC_gene_1767_tx_7 1 - 302216 302698 . 1 483 0 -chrIV 302216 302699 HC_gene_1767_tx_8 1 - 302216 302699 . 1 484 0 -chrIV 302216 302710 HC_gene_1767_tx_9 1 - 302216 302710 . 1 495 0 -chrIV 302216 302714 HC_gene_1767_tx_10 1 - 302216 302714 . 1 499 0 -chrIV 302216 302716 HC_gene_1767_tx_11 1 - 302216 302716 . 1 501 0 -chrIV 302216 302721 HC_gene_1767_tx_12 1 - 302216 302721 . 1 506 0 -chrIV 302216 302727 HC_gene_1767_tx_13 75 - 302216 302727 . 1 512 0 -chrIV 302368 302607 HC_gene_1767_tx_14 7 - 302368 302607 . 1 240 0 -chrIV 302368 302727 HC_gene_1767_tx_15 104 - 302368 302727 . 1 360 0 -chrIV 303160 305017 MC_gene_1153_tx_1 1 + 303160 305017 . 1 1858 0 -chrIV 304010 304854 MC_gene_1768_tx_1 1 - 304010 304854 . 1 845 0 -chrIV 305076 306710 HC_gene_1154_tx_1 264 + 305076 306710 . 1 1635 0 -chrIV 305076 306710 HC_gene_1154_tx_2 1 + 305076 306710 . 2 68,1524 0,111 -chrIV 305076 306710 HC_gene_1154_tx_3 1 + 305076 306710 . 3 90,821,609 0,156,1026 -chrIV 305076 306710 HC_gene_1154_tx_4 1 + 305076 306710 . 2 1044,541 0,1094 -chrIV 305076 306710 HC_gene_1154_tx_5 1 + 305076 306710 . 2 336,1066 0,569 -chrIV 305076 306710 HC_gene_1154_tx_6 1 + 305076 306710 . 2 1488,93 0,1542 -chrIV 305232 306710 HC_gene_1154_tx_7 19 + 305232 306710 . 1 1479 0 -chrIV 305315 306710 HC_gene_1154_tx_8 8 + 305315 306710 . 1 1396 0 -chrIV 305478 306710 HC_gene_1154_tx_9 28 + 305478 306710 . 1 1233 0 -chrIV 305478 306710 HC_gene_1154_tx_10 1 + 305478 306710 . 2 107,1055 0,178 -chrIV 305622 306710 HC_gene_1154_tx_11 27 + 305622 306710 . 1 1089 0 -chrIV 305738 306710 HC_gene_1154_tx_12 47 + 305738 306710 . 1 973 0 -chrIV 305738 306710 HC_gene_1154_tx_13 1 + 305738 306710 . 2 790,140 0,833 -chrIV 305817 306710 HC_gene_1154_tx_14 35 + 305817 306710 . 1 894 0 -chrIV 305817 306710 HC_gene_1154_tx_15 1 + 305817 306710 . 2 512,331 0,563 -chrIV 306015 306710 HC_gene_1154_tx_16 89 + 306015 306710 . 1 696 0 -chrIV 306107 306503 LC_gene_1769_tx_1 1 - 306107 306503 . 1 397 0 -chrIV 306342 306710 HC_gene_1154_tx_17 79 + 306342 306710 . 1 369 0 -chrIV 306549 307095 HC_gene_1770_tx_1 4 - 306549 307095 . 1 547 0 -chrIV 306549 307278 HC_gene_1770_tx_2 19 - 306549 307278 . 1 730 0 -chrIV 306549 307808 HC_gene_1770_tx_55 8 - 306549 307808 . 2 785,43 0,1217 -chrIV 306549 307808 HC_gene_1770_tx_56 9 - 306549 307808 . 1 1260 0 -chrIV 306668 307278 HC_gene_1770_tx_3 1 - 306668 307278 . 2 402,154 0,457 -chrIV 306669 307808 HC_gene_1770_tx_57 1 - 306669 307808 . 1 1140 0 -chrIV 306670 307808 HC_gene_1770_tx_58 1 - 306670 307808 . 2 664,43 0,1096 -chrIV 306681 307808 HC_gene_1770_tx_59 1 - 306681 307808 . 2 653,43 0,1085 -chrIV 306682 307095 HC_gene_1770_tx_117 1 - 306682 307095 . 1 414 0 -chrIV 306689 307278 HC_gene_1770_tx_4 1 - 306689 307278 . 1 590 0 -chrIV 306692 307808 HC_gene_1770_tx_60 1 - 306692 307808 . 2 642,43 0,1074 -chrIV 306699 307095 HC_gene_1770_tx_118 1 - 306699 307095 . 1 397 0 -chrIV 306699 307278 HC_gene_1770_tx_5 1 - 306699 307278 . 1 580 0 -chrIV 306700 307278 HC_gene_1770_tx_6 1 - 306700 307278 . 1 579 0 -chrIV 306717 307278 HC_gene_1770_tx_7 1 - 306717 307278 . 1 562 0 -chrIV 306727 307808 HC_gene_1770_tx_61 1 - 306727 307808 . 2 607,43 0,1039 -chrIV 306728 307278 HC_gene_1770_tx_8 1 - 306728 307278 . 1 551 0 -chrIV 306731 307278 HC_gene_1770_tx_9 1 - 306731 307278 . 1 548 0 -chrIV 306733 307278 HC_gene_1770_tx_10 1 - 306733 307278 . 1 546 0 -chrIV 306738 307095 HC_gene_1770_tx_119 1 - 306738 307095 . 1 358 0 -chrIV 306738 307278 HC_gene_1770_tx_11 2 - 306738 307278 . 1 541 0 -chrIV 306740 307278 HC_gene_1770_tx_12 1 - 306740 307278 . 1 539 0 -chrIV 306745 307095 HC_gene_1770_tx_120 1 - 306745 307095 . 1 351 0 -chrIV 306745 307278 HC_gene_1770_tx_13 2 - 306745 307278 . 1 534 0 -chrIV 306746 307278 HC_gene_1770_tx_14 1 - 306746 307278 . 1 533 0 -chrIV 306747 307095 HC_gene_1770_tx_121 1 - 306747 307095 . 1 349 0 -chrIV 306747 307278 HC_gene_1770_tx_15 1 - 306747 307278 . 1 532 0 -chrIV 306749 307095 HC_gene_1770_tx_122 1 - 306749 307095 . 1 347 0 -chrIV 306753 307278 HC_gene_1770_tx_16 1 - 306753 307278 . 1 526 0 -chrIV 306753 307808 HC_gene_1770_tx_62 1 - 306753 307808 . 2 581,43 0,1013 -chrIV 306754 307278 HC_gene_1770_tx_17 1 - 306754 307278 . 1 525 0 -chrIV 306770 307278 HC_gene_1770_tx_18 2 - 306770 307278 . 1 509 0 -chrIV 306773 307278 HC_gene_1770_tx_19 2 - 306773 307278 . 1 506 0 -chrIV 306773 307808 HC_gene_1770_tx_63 1 - 306773 307808 . 2 561,43 0,993 -chrIV 306773 307808 HC_gene_1770_tx_64 1 - 306773 307808 . 1 1036 0 -chrIV 306774 307278 HC_gene_1770_tx_20 4 - 306774 307278 . 1 505 0 -chrIV 306775 307095 HC_gene_1770_tx_123 2 - 306775 307095 . 1 321 0 -chrIV 306775 307278 HC_gene_1770_tx_21 7 - 306775 307278 . 1 504 0 -chrIV 306775 307808 HC_gene_1770_tx_65 2 - 306775 307808 . 2 559,43 0,991 -chrIV 306776 307278 HC_gene_1770_tx_22 1 - 306776 307278 . 1 503 0 -chrIV 306776 307808 HC_gene_1770_tx_66 3 - 306776 307808 . 2 558,43 0,990 -chrIV 306777 307095 HC_gene_1770_tx_124 1 - 306777 307095 . 1 319 0 -chrIV 306779 307095 HC_gene_1770_tx_125 1 - 306779 307095 . 1 317 0 -chrIV 306779 307278 HC_gene_1770_tx_23 7 - 306779 307278 . 1 500 0 -chrIV 306779 307808 HC_gene_1770_tx_67 2 - 306779 307808 . 2 555,43 0,987 -chrIV 306781 307278 HC_gene_1770_tx_24 7 - 306781 307278 . 1 498 0 -chrIV 306781 307808 HC_gene_1770_tx_68 3 - 306781 307808 . 2 553,43 0,985 -chrIV 306782 307095 HC_gene_1770_tx_126 3 - 306782 307095 . 1 314 0 -chrIV 306782 307278 HC_gene_1770_tx_25 5 - 306782 307278 . 1 497 0 -chrIV 306782 307808 HC_gene_1770_tx_69 5 - 306782 307808 . 2 552,43 0,984 -chrIV 306783 307278 HC_gene_1770_tx_26 4 - 306783 307278 . 1 496 0 -chrIV 306783 307808 HC_gene_1770_tx_70 1 - 306783 307808 . 1 1026 0 -chrIV 306785 307278 HC_gene_1770_tx_27 4 - 306785 307278 . 1 494 0 -chrIV 306785 307808 HC_gene_1770_tx_71 2 - 306785 307808 . 2 549,43 0,981 -chrIV 306786 307095 HC_gene_1770_tx_127 1 - 306786 307095 . 1 310 0 -chrIV 306786 307278 HC_gene_1770_tx_28 3 - 306786 307278 . 1 493 0 -chrIV 306786 307808 HC_gene_1770_tx_72 3 - 306786 307808 . 2 548,43 0,980 -chrIV 306787 307095 HC_gene_1770_tx_128 2 - 306787 307095 . 1 309 0 -chrIV 306787 307278 HC_gene_1770_tx_29 21 - 306787 307278 . 1 492 0 -chrIV 306787 307808 HC_gene_1770_tx_73 10 - 306787 307808 . 2 547,43 0,979 -chrIV 306788 307278 HC_gene_1770_tx_30 4 - 306788 307278 . 1 491 0 -chrIV 306789 307095 HC_gene_1770_tx_129 1 - 306789 307095 . 1 307 0 -chrIV 306789 307278 HC_gene_1770_tx_31 3 - 306789 307278 . 1 490 0 -chrIV 306790 307095 HC_gene_1770_tx_130 4 - 306790 307095 . 1 306 0 -chrIV 306790 307278 HC_gene_1770_tx_32 20 - 306790 307278 . 1 489 0 -chrIV 306790 307808 HC_gene_1770_tx_74 11 - 306790 307808 . 2 544,43 0,976 -chrIV 306791 307095 HC_gene_1770_tx_131 2 - 306791 307095 . 1 305 0 -chrIV 306791 307278 HC_gene_1770_tx_33 26 - 306791 307278 . 1 488 0 -chrIV 306791 307808 HC_gene_1770_tx_75 17 - 306791 307808 . 2 543,43 0,975 -chrIV 306792 307095 HC_gene_1770_tx_132 10 - 306792 307095 . 1 304 0 -chrIV 306792 307278 HC_gene_1770_tx_34 57 - 306792 307278 . 1 487 0 -chrIV 306792 307808 HC_gene_1770_tx_76 1 - 306792 307808 . 1 1017 0 -chrIV 306792 307808 HC_gene_1770_tx_77 18 - 306792 307808 . 2 542,43 0,974 -chrIV 306793 307095 HC_gene_1770_tx_133 34 - 306793 307095 . 1 303 0 -chrIV 306793 307278 HC_gene_1770_tx_35 226 - 306793 307278 . 1 486 0 -chrIV 306793 307808 HC_gene_1770_tx_78 7 - 306793 307808 . 1 1016 0 -chrIV 306793 307808 HC_gene_1770_tx_79 117 - 306793 307808 . 2 541,43 0,973 -chrIV 306794 307095 HC_gene_1770_tx_134 8 - 306794 307095 . 1 302 0 -chrIV 306794 307278 HC_gene_1770_tx_36 77 - 306794 307278 . 1 485 0 -chrIV 306794 307808 HC_gene_1770_tx_80 6 - 306794 307808 . 1 1015 0 -chrIV 306794 307808 HC_gene_1770_tx_81 34 - 306794 307808 . 2 540,43 0,972 -chrIV 306795 307095 HC_gene_1770_tx_135 7 - 306795 307095 . 1 301 0 -chrIV 306795 307278 HC_gene_1770_tx_37 59 - 306795 307278 . 1 484 0 -chrIV 306795 307808 HC_gene_1770_tx_82 25 - 306795 307808 . 2 539,43 0,971 -chrIV 306796 307095 HC_gene_1770_tx_136 3 - 306796 307095 . 1 300 0 -chrIV 306796 307278 HC_gene_1770_tx_38 32 - 306796 307278 . 1 483 0 -chrIV 306796 307808 HC_gene_1770_tx_83 17 - 306796 307808 . 2 538,43 0,970 -chrIV 306797 307095 HC_gene_1770_tx_137 9 - 306797 307095 . 1 299 0 -chrIV 306797 307278 HC_gene_1770_tx_39 95 - 306797 307278 . 1 482 0 -chrIV 306797 307808 HC_gene_1770_tx_84 7 - 306797 307808 . 1 1012 0 -chrIV 306797 307808 HC_gene_1770_tx_85 40 - 306797 307808 . 2 537,43 0,969 -chrIV 306797 307808 HC_gene_1770_tx_86 1 - 306797 307808 . 2 515,43 0,969 -chrIV 306798 307095 HC_gene_1770_tx_138 5 - 306798 307095 . 1 298 0 -chrIV 306798 307278 HC_gene_1770_tx_40 24 - 306798 307278 . 1 481 0 -chrIV 306798 307808 HC_gene_1770_tx_87 1 - 306798 307808 . 1 1011 0 -chrIV 306798 307808 HC_gene_1770_tx_88 13 - 306798 307808 . 2 536,43 0,968 -chrIV 306799 307095 HC_gene_1770_tx_139 1 - 306799 307095 . 1 297 0 -chrIV 306799 307278 HC_gene_1770_tx_41 6 - 306799 307278 . 1 480 0 -chrIV 306799 307808 HC_gene_1770_tx_89 2 - 306799 307808 . 1 1010 0 -chrIV 306799 307808 HC_gene_1770_tx_90 3 - 306799 307808 . 2 535,43 0,967 -chrIV 306800 307095 HC_gene_1770_tx_140 3 - 306800 307095 . 1 296 0 -chrIV 306800 307278 HC_gene_1770_tx_42 34 - 306800 307278 . 1 479 0 -chrIV 306800 307808 HC_gene_1770_tx_91 3 - 306800 307808 . 1 1009 0 -chrIV 306800 307808 HC_gene_1770_tx_92 15 - 306800 307808 . 2 534,43 0,966 -chrIV 306801 307095 HC_gene_1770_tx_141 14 - 306801 307095 . 1 295 0 -chrIV 306801 307278 HC_gene_1770_tx_43 106 - 306801 307278 . 1 478 0 -chrIV 306801 307808 HC_gene_1770_tx_93 1 - 306801 307808 . 1 1008 0 -chrIV 306801 307808 HC_gene_1770_tx_94 63 - 306801 307808 . 2 533,43 0,965 -chrIV 306801 307808 HC_gene_1770_tx_95 1 - 306801 307808 . 2 484,43 0,965 -chrIV 306801 307808 HC_gene_1770_tx_96 1 - 306801 307808 . 2 511,43 0,965 -chrIV 306801 307808 HC_gene_1770_tx_97 1 - 306801 307808 . 2 521,43 0,965 -chrIV 306802 307095 HC_gene_1770_tx_142 5 - 306802 307095 . 1 294 0 -chrIV 306802 307278 HC_gene_1770_tx_44 38 - 306802 307278 . 1 477 0 -chrIV 306802 307808 HC_gene_1770_tx_98 2 - 306802 307808 . 1 1007 0 -chrIV 306802 307808 HC_gene_1770_tx_99 34 - 306802 307808 . 2 532,43 0,964 -chrIV 306803 307095 HC_gene_1770_tx_143 4 - 306803 307095 . 1 293 0 -chrIV 306803 307278 HC_gene_1770_tx_45 45 - 306803 307278 . 1 476 0 -chrIV 306803 307808 HC_gene_1770_tx_100 23 - 306803 307808 . 2 531,43 0,963 -chrIV 306804 307095 HC_gene_1770_tx_144 25 - 306804 307095 . 1 292 0 -chrIV 306804 307278 HC_gene_1770_tx_46 102 - 306804 307278 . 1 475 0 -chrIV 306804 307278 HC_gene_1770_tx_47 1 - 306804 307278 . 2 218,154 0,321 -chrIV 306804 307808 HC_gene_1770_tx_101 3 - 306804 307808 . 1 1005 0 -chrIV 306804 307808 HC_gene_1770_tx_102 58 - 306804 307808 . 2 530,43 0,962 -chrIV 306805 307095 HC_gene_1770_tx_145 1 - 306805 307095 . 1 291 0 -chrIV 306805 307278 HC_gene_1770_tx_48 4 - 306805 307278 . 1 474 0 -chrIV 306805 307808 HC_gene_1770_tx_103 1 - 306805 307808 . 1 1004 0 -chrIV 306805 307808 HC_gene_1770_tx_104 2 - 306805 307808 . 2 529,43 0,961 -chrIV 306806 307278 HC_gene_1770_tx_49 8 - 306806 307278 . 1 473 0 -chrIV 306806 307808 HC_gene_1770_tx_105 3 - 306806 307808 . 2 528,43 0,960 -chrIV 306807 307095 HC_gene_1770_tx_146 2 - 306807 307095 . 1 289 0 -chrIV 306807 307278 HC_gene_1770_tx_50 15 - 306807 307278 . 1 472 0 -chrIV 306807 307808 HC_gene_1770_tx_106 3 - 306807 307808 . 1 1002 0 -chrIV 306807 307808 HC_gene_1770_tx_107 8 - 306807 307808 . 2 527,43 0,959 -chrIV 306808 307095 HC_gene_1770_tx_147 5 - 306808 307095 . 1 288 0 -chrIV 306808 307278 HC_gene_1770_tx_51 20 - 306808 307278 . 1 471 0 -chrIV 306808 307808 HC_gene_1770_tx_108 1 - 306808 307808 . 1 1001 0 -chrIV 306808 307808 HC_gene_1770_tx_109 14 - 306808 307808 . 2 526,43 0,958 -chrIV 306809 307278 HC_gene_1770_tx_52 39 - 306809 307278 . 1 470 0 -chrIV 306809 307808 HC_gene_1770_tx_110 3 - 306809 307808 . 1 1000 0 -chrIV 306809 307808 HC_gene_1770_tx_111 18 - 306809 307808 . 2 525,43 0,957 -chrIV 306810 307095 HC_gene_1770_tx_148 7 - 306810 307095 . 1 286 0 -chrIV 306810 307278 HC_gene_1770_tx_53 57 - 306810 307278 . 1 469 0 -chrIV 306810 307808 HC_gene_1770_tx_112 3 - 306810 307808 . 1 999 0 -chrIV 306810 307808 HC_gene_1770_tx_113 32 - 306810 307808 . 2 524,43 0,956 -chrIV 306811 307095 HC_gene_1770_tx_149 3 - 306811 307095 . 1 285 0 -chrIV 306811 307278 HC_gene_1770_tx_54 57 - 306811 307278 . 1 468 0 -chrIV 306811 307808 HC_gene_1770_tx_114 1 - 306811 307808 . 1 998 0 -chrIV 306811 307808 HC_gene_1770_tx_115 27 - 306811 307808 . 2 523,43 0,955 -chrIV 306811 307808 HC_gene_1770_tx_116 1 - 306811 307808 . 2 523,47 0,951 -chrIV 308385 309424 HC_gene_1155_tx_1 46 + 308385 309424 . 2 43,632 0,408 -chrIV 308385 309424 HC_gene_1155_tx_2 11 + 308385 309424 . 1 1040 0 -chrIV 308385 309531 HC_gene_1155_tx_3 140 + 308385 309531 . 2 43,739 0,408 -chrIV 308385 309531 HC_gene_1155_tx_4 29 + 308385 309531 . 1 1147 0 -chrIV 308781 309424 HC_gene_1155_tx_5 251 + 308781 309424 . 1 644 0 -chrIV 308781 309531 HC_gene_1155_tx_6 757 + 308781 309531 . 1 751 0 -chrIV 308918 309424 HC_gene_1155_tx_7 105 + 308918 309424 . 1 507 0 -chrIV 308918 309531 HC_gene_1155_tx_8 565 + 308918 309531 . 1 614 0 -chrIV 309692 309996 HC_gene_1771_tx_1 238 - 309692 309996 . 1 305 0 -chrIV 309692 310189 HC_gene_1771_tx_2 2707 - 309692 310189 . 1 498 0 -chrIV 310470 312487 HC_gene_1772_tx_1 4 - 310470 312487 . 1 2018 0 -chrIV 310470 312591 HC_gene_1772_tx_2 1 - 310470 312591 . 1 2122 0 -chrIV 310470 312656 HC_gene_1772_tx_3 8 - 310470 312656 . 1 2187 0 -chrIV 310514 311231 LC_gene_1156_tx_1 1 + 310514 311231 . 1 718 0 -chrIV 312827 314445 HC_gene_1773_tx_1 1 - 312827 314445 . 2 1218,109 0,1510 -chrIV 312827 314508 HC_gene_1773_tx_2 1 - 312827 314508 . 2 1290,206 0,1476 -chrIV 312827 314508 HC_gene_1773_tx_3 1 - 312827 314508 . 1 1682 0 -chrIV 312827 314508 HC_gene_1773_tx_4 1 - 312827 314508 . 2 1218,172 0,1510 -chrIV 312827 314776 HC_gene_1773_tx_5 1 - 312827 314776 . 2 1218,444 0,1506 -chrIV 312827 314776 HC_gene_1773_tx_6 1 - 312827 314776 . 1 1950 0 -chrIV 312827 314776 HC_gene_1773_tx_7 3 - 312827 314776 . 2 1218,440 0,1510 -chrIV 312878 313190 HC_gene_1157_tx_1 1 + 312878 313190 . 1 313 0 -chrIV 312878 313721 HC_gene_1157_tx_2 3 + 312878 313721 . 1 844 0 -chrIV 312878 313906 HC_gene_1157_tx_3 3 + 312878 313906 . 1 1029 0 -chrIV 312878 314125 HC_gene_1157_tx_4 3 + 312878 314125 . 1 1248 0 -chrIV 312878 314202 HC_gene_1157_tx_5 1 + 312878 314202 . 1 1325 0 -chrIV 314477 314794 LC_gene_1158_tx_1 1 + 314477 314794 . 1 318 0 -chrIV 315204 316272 LC_gene_1159_tx_1 1 + 315204 316272 . 1 1069 0 -chrIV 315272 315821 HC_gene_1774_tx_1 24 - 315272 315821 . 1 550 0 -chrIV 315272 315958 HC_gene_1774_tx_2 43 - 315272 315958 . 1 687 0 -chrIV 315272 316192 HC_gene_1774_tx_3 9 - 315272 316192 . 1 921 0 -chrIV 315272 316298 HC_gene_1774_tx_4 12 - 315272 316298 . 1 1027 0 -chrIV 315272 316445 HC_gene_1774_tx_5 160 - 315272 316445 . 1 1174 0 -chrIV 316568 316912 HC_gene_1160_tx_1 5 + 316568 316912 . 1 345 0 -chrIV 316905 319781 MC_gene_1775_tx_1 1 - 316905 319781 . 1 2877 0 -chrIV 317779 318455 MC_gene_1775_tx_2 1 - 317779 318455 . 1 677 0 -chrIV 320407 321488 HC_gene_1776_tx_1 67 - 320407 321488 . 1 1082 0 -chrIV 320407 321488 HC_gene_1776_tx_2 1 - 320407 321488 . 2 680,125 0,957 -chrIV 320416 320799 HC_gene_1161_tx_1 2 + 320416 320799 . 1 384 0 -chrIV 320416 320876 HC_gene_1161_tx_2 6 + 320416 320876 . 1 461 0 -chrIV 320571 321488 HC_gene_1776_tx_3 16 - 320571 321488 . 1 918 0 -chrIV 320571 321488 HC_gene_1776_tx_4 1 - 320571 321488 . 2 649,162 0,756 -chrIV 322194 323058 HC_gene_1162_tx_1 4362 + 322194 323058 . 2 89,355 0,510 -chrIV 322194 323058 HC_gene_1162_tx_2 52 + 322194 323058 . 2 93,355 0,510 -chrIV 322194 323058 HC_gene_1162_tx_3 16 + 322194 323058 . 2 60,355 0,510 -chrIV 322194 323058 HC_gene_1162_tx_4 41 + 322194 323058 . 1 865 0 -chrIV 322194 323058 HC_gene_1162_tx_5 10 + 322194 323058 . 2 93,334 0,531 -chrIV 322713 323058 HC_gene_1162_tx_6 2093 + 322713 323058 . 1 346 0 -chrIV 322994 323511 HC_gene_1777_tx_1 55 - 322994 323511 . 1 518 0 -chrIV 322994 323633 HC_gene_1777_tx_2 8 - 322994 323633 . 1 640 0 -chrIV 323099 323633 HC_gene_1777_tx_3 1 - 323099 323633 . 1 535 0 -chrIV 323100 323633 HC_gene_1777_tx_4 3 - 323100 323633 . 1 534 0 -chrIV 323155 323511 HC_gene_1777_tx_6 4 - 323155 323511 . 1 357 0 -chrIV 323155 323633 HC_gene_1777_tx_5 6 - 323155 323633 . 1 479 0 -chrIV 323295 323789 LC_gene_1163_tx_1 1 + 323295 323789 . 1 495 0 -chrIV 323645 326222 HC_gene_1778_tx_1 1 - 323645 326222 . 1 2578 0 -chrIV 323791 324396 HC_gene_1164_tx_1 1 + 323791 324396 . 1 606 0 -chrIV 323791 324500 HC_gene_1164_tx_2 5 + 323791 324500 . 1 710 0 -chrIV 323937 324396 HC_gene_1164_tx_3 6 + 323937 324396 . 1 460 0 -chrIV 323937 324500 HC_gene_1164_tx_4 6 + 323937 324500 . 1 564 0 -chrIV 323952 324798 HC_gene_1778_tx_3 9 - 323952 324798 . 1 847 0 -chrIV 323952 325663 HC_gene_1778_tx_4 4 - 323952 325663 . 1 1712 0 -chrIV 323952 326222 HC_gene_1778_tx_2 21 - 323952 326222 . 1 2271 0 -chrIV 324449 325663 HC_gene_1778_tx_5 1 - 324449 325663 . 1 1215 0 -chrIV 324452 326222 HC_gene_1778_tx_6 1 - 324452 326222 . 1 1771 0 -chrIV 326432 329717 HC_gene_1165_tx_1 5 + 326432 329717 . 1 3286 0 -chrIV 329748 330189 HC_gene_1779_tx_1 37 - 329748 330189 . 1 442 0 -chrIV 329748 330396 HC_gene_1779_tx_2 28 - 329748 330396 . 1 649 0 -chrIV 329748 330511 HC_gene_1779_tx_3 317 - 329748 330511 . 1 764 0 -chrIV 329748 330872 HC_gene_1779_tx_4 3 - 329748 330872 . 1 1125 0 -chrIV 329902 330265 LC_gene_1166_tx_1 1 + 329902 330265 . 1 364 0 -chrIV 330711 333206 HC_gene_1167_tx_1 5 + 330711 333206 . 1 2496 0 -chrIV 331000 333206 HC_gene_1167_tx_2 83 + 331000 333206 . 1 2207 0 -chrIV 331000 333206 HC_gene_1167_tx_3 1 + 331000 333206 . 2 372,1760 0,447 -chrIV 331000 333206 HC_gene_1167_tx_4 1 + 331000 333206 . 2 1315,820 0,1387 -chrIV 331000 333206 HC_gene_1167_tx_5 1 + 331000 333206 . 2 1089,955 0,1252 -chrIV 331000 333206 HC_gene_1167_tx_6 1 + 331000 333206 . 2 545,1581 0,626 -chrIV 331157 333206 HC_gene_1167_tx_7 11 + 331157 333206 . 1 2050 0 -chrIV 331219 333206 HC_gene_1167_tx_8 1 + 331219 333206 . 2 330,1369 0,619 -chrIV 331219 333206 HC_gene_1167_tx_9 11 + 331219 333206 . 1 1988 0 -chrIV 332258 333206 HC_gene_1167_tx_10 25 + 332258 333206 . 1 949 0 -chrIV 332462 333206 HC_gene_1167_tx_11 17 + 332462 333206 . 1 745 0 -chrIV 332557 333206 HC_gene_1167_tx_12 43 + 332557 333206 . 1 650 0 -chrIV 332775 333206 HC_gene_1167_tx_13 82 + 332775 333206 . 1 432 0 -chrIV 332996 333944 HC_gene_1780_tx_1 20 - 332996 333944 . 1 949 0 -chrIV 333094 333944 HC_gene_1780_tx_2 3 - 333094 333944 . 1 851 0 -chrIV 333976 334443 HC_gene_1781_tx_1 402 - 333976 334443 . 1 468 0 -chrIV 333976 334607 HC_gene_1781_tx_2 42 - 333976 334607 . 1 632 0 -chrIV 334809 336160 HC_gene_1168_tx_1 37 + 334809 336160 . 1 1352 0 -chrIV 334809 336316 HC_gene_1168_tx_2 109 + 334809 336316 . 1 1508 0 -chrIV 334809 336316 HC_gene_1168_tx_3 1 + 334809 336316 . 2 291,837 0,671 -chrIV 334809 336316 HC_gene_1168_tx_4 1 + 334809 336316 . 2 752,674 0,834 -chrIV 334809 336316 HC_gene_1168_tx_5 1 + 334809 336316 . 2 306,1121 0,387 -chrIV 334809 336527 HC_gene_1168_tx_6 2 + 334809 336527 . 1 1719 0 -chrIV 335195 336160 HC_gene_1168_tx_7 6 + 335195 336160 . 1 966 0 -chrIV 335195 336316 HC_gene_1168_tx_8 17 + 335195 336316 . 1 1122 0 -chrIV 335255 336160 HC_gene_1168_tx_9 3 + 335255 336160 . 1 906 0 -chrIV 335255 336316 HC_gene_1168_tx_10 15 + 335255 336316 . 1 1062 0 -chrIV 335392 336035 LC_gene_1782_tx_1 1 - 335392 336035 . 1 644 0 -chrIV 335457 336160 HC_gene_1168_tx_11 5 + 335457 336160 . 1 704 0 -chrIV 335457 336316 HC_gene_1168_tx_12 18 + 335457 336316 . 1 860 0 -chrIV 335736 336160 HC_gene_1168_tx_13 8 + 335736 336160 . 1 425 0 -chrIV 335736 336316 HC_gene_1168_tx_14 35 + 335736 336316 . 1 581 0 -chrIV 335850 336316 HC_gene_1168_tx_15 30 + 335850 336316 . 1 467 0 -chrIV 336054 336659 HC_gene_1783_tx_1 9 - 336054 336659 . 1 606 0 -chrIV 336054 337175 HC_gene_1783_tx_2 5 - 336054 337175 . 1 1122 0 -chrIV 336054 337283 HC_gene_1783_tx_3 1 - 336054 337283 . 2 1055,112 0,1118 -chrIV 336054 337297 HC_gene_1783_tx_4 44 - 336054 337297 . 1 1244 0 -chrIV 336191 336659 HC_gene_1783_tx_9 5 - 336191 336659 . 1 469 0 -chrIV 336191 337175 HC_gene_1783_tx_5 3 - 336191 337175 . 1 985 0 -chrIV 336191 337297 HC_gene_1783_tx_6 42 - 336191 337297 . 1 1107 0 -chrIV 336191 337297 HC_gene_1783_tx_7 1 - 336191 337297 . 2 409,606 0,501 -chrIV 336191 337297 HC_gene_1783_tx_8 1 - 336191 337297 . 2 918,86 0,1021 -chrIV 336442 337297 HC_gene_1783_tx_10 1 - 336442 337297 . 1 856 0 -chrIV 337443 338205 HC_gene_1169_tx_1 12 + 337443 338205 . 2 86,571 0,192 -chrIV 337443 338205 HC_gene_1169_tx_2 90 + 337443 338205 . 2 82,571 0,192 -chrIV 337443 338205 HC_gene_1169_tx_3 29 + 337443 338205 . 1 763 0 -chrIV 337443 338205 HC_gene_1169_tx_4 3 + 337443 338205 . 2 82,559 0,204 -chrIV 337443 338205 HC_gene_1169_tx_5 2 + 337443 338205 . 2 89,571 0,192 -chrIV 337758 338205 HC_gene_1169_tx_6 36 + 337758 338205 . 1 448 0 -chrIV 338026 340236 HC_gene_1784_tx_1 1 - 338026 340236 . 1 2211 0 -chrIV 338203 340236 HC_gene_1784_tx_2 32 - 338203 340236 . 1 2034 0 -chrIV 338203 340236 HC_gene_1784_tx_3 1 - 338203 340236 . 2 748,1207 0,827 -chrIV 340459 340823 HC_gene_1785_tx_1 3586 - 340459 340823 . 1 365 0 -chrIV 340459 341240 HC_gene_1785_tx_2 86 - 340459 341240 . 1 782 0 -chrIV 340459 341240 HC_gene_1785_tx_3 46 - 340459 341240 . 2 352,21 0,761 -chrIV 340462 340899 MC_gene_1170_tx_1 1 + 340462 340899 . 1 438 0 -chrIV 341567 342049 HC_gene_1171_tx_1 3 + 341567 342049 . 1 483 0 -chrIV 341567 344054 HC_gene_1171_tx_2 21 + 341567 344054 . 1 2488 0 -chrIV 341567 344054 HC_gene_1171_tx_3 1 + 341567 344054 . 2 1513,912 0,1576 -chrIV 341567 344054 HC_gene_1171_tx_4 1 + 341567 344054 . 2 2360,51 0,2437 -chrIV 341616 344054 HC_gene_1171_tx_5 1 + 341616 344054 . 2 1155,997 0,1442 -chrIV 341716 344054 HC_gene_1171_tx_6 2 + 341716 344054 . 1 2339 0 -chrIV 342456 344054 HC_gene_1172_tx_1 3 + 342456 344054 . 1 1599 0 -chrIV 342456 344223 HC_gene_1172_tx_2 1 + 342456 344223 . 1 1768 0 -chrIV 342767 344054 HC_gene_1172_tx_3 1 + 342767 344054 . 2 694,532 0,756 -chrIV 342767 344054 HC_gene_1172_tx_4 2 + 342767 344054 . 1 1288 0 -chrIV 342826 344054 HC_gene_1172_tx_5 4 + 342826 344054 . 1 1229 0 -chrIV 343970 344810 HC_gene_1786_tx_1 4 - 343970 344810 . 1 841 0 -chrIV 343970 345067 HC_gene_1786_tx_2 14 - 343970 345067 . 1 1098 0 -chrIV 344695 345278 LC_gene_1173_tx_1 1 + 344695 345278 . 1 584 0 -chrIV 345262 346258 LC_gene_1787_tx_1 1 - 345262 346258 . 1 997 0 -chrIV 345628 347834 HC_gene_1174_tx_1 1 + 345628 347834 . 1 2207 0 -chrIV 345628 351192 HC_gene_1174_tx_2 1 + 345628 351192 . 2 1242,4243 0,1322 -chrIV 347625 351192 HC_gene_1174_tx_3 2 + 347625 351192 . 1 3568 0 -chrIV 347895 351192 HC_gene_1174_tx_4 1 + 347895 351192 . 1 3298 0 -chrIV 348625 351192 HC_gene_1174_tx_5 2 + 348625 351192 . 1 2568 0 -chrIV 348780 351192 HC_gene_1174_tx_6 4 + 348780 351192 . 1 2413 0 -chrIV 348932 351192 HC_gene_1174_tx_7 3 + 348932 351192 . 1 2261 0 -chrIV 349160 351192 HC_gene_1174_tx_8 4 + 349160 351192 . 1 2033 0 -chrIV 349160 351192 HC_gene_1174_tx_9 1 + 349160 351192 . 2 463,1466 0,567 -chrIV 349278 351192 HC_gene_1174_tx_10 1 + 349278 351192 . 2 98,1768 0,147 -chrIV 349278 351192 HC_gene_1174_tx_11 1 + 349278 351192 . 1 1915 0 -chrIV 349435 351192 HC_gene_1174_tx_12 7 + 349435 351192 . 1 1758 0 -chrIV 349543 351192 HC_gene_1174_tx_13 1 + 349543 351192 . 1 1650 0 -chrIV 349709 351192 HC_gene_1174_tx_14 4 + 349709 351192 . 1 1484 0 -chrIV 349915 351192 HC_gene_1174_tx_15 7 + 349915 351192 . 1 1278 0 -chrIV 350063 351192 HC_gene_1174_tx_16 4 + 350063 351192 . 1 1130 0 -chrIV 350119 351192 HC_gene_1174_tx_17 3 + 350119 351192 . 1 1074 0 -chrIV 350222 351192 HC_gene_1174_tx_18 6 + 350222 351192 . 1 971 0 -chrIV 350222 351192 HC_gene_1174_tx_19 1 + 350222 351192 . 2 66,775 0,196 -chrIV 350391 351192 HC_gene_1174_tx_20 25 + 350391 351192 . 1 802 0 -chrIV 350391 351192 HC_gene_1174_tx_21 1 + 350391 351192 . 2 661,95 0,707 -chrIV 350651 351192 HC_gene_1174_tx_22 14 + 350651 351192 . 1 542 0 -chrIV 350760 351192 HC_gene_1174_tx_23 9 + 350760 351192 . 1 433 0 -chrIV 351426 352467 HC_gene_1175_tx_1 10 + 351426 352467 . 1 1042 0 -chrIV 352761 355447 HC_gene_1176_tx_1 3 + 352761 355447 . 1 2687 0 -chrIV 354915 355355 HC_gene_1176_tx_2 1 + 354915 355355 . 1 441 0 -chrIV 354915 355447 HC_gene_1176_tx_3 4 + 354915 355447 . 1 533 0 -chrIV 355426 355756 HC_gene_1788_tx_1 250 - 355426 355756 . 1 331 0 -chrIV 355426 355907 HC_gene_1788_tx_2 506 - 355426 355907 . 1 482 0 -chrIV 355426 356116 HC_gene_1788_tx_3 154 - 355426 356116 . 1 691 0 -chrIV 355426 356116 HC_gene_1788_tx_4 1 - 355426 356116 . 2 117,459 0,232 -chrIV 355426 356237 HC_gene_1788_tx_5 166 - 355426 356237 . 1 812 0 -chrIV 355426 356237 HC_gene_1788_tx_6 1 - 355426 356237 . 2 592,163 0,649 -chrIV 355426 356246 HC_gene_1788_tx_7 1 - 355426 356246 . 2 615,144 0,677 -chrIV 355426 356375 HC_gene_1788_tx_8 647 - 355426 356375 . 1 950 0 -chrIV 355426 356375 HC_gene_1788_tx_9 1 - 355426 356375 . 2 779,121 0,829 -chrIV 355426 356375 HC_gene_1788_tx_10 1 - 355426 356375 . 2 495,298 0,652 -chrIV 355426 356375 HC_gene_1788_tx_11 1 - 355426 356375 . 2 592,107 0,843 -chrIV 355426 356375 HC_gene_1788_tx_12 1 - 355426 356375 . 2 290,583 0,367 -chrIV 355426 356375 HC_gene_1788_tx_13 1 - 355426 356375 . 2 691,121 0,829 -chrIV 355426 356375 HC_gene_1788_tx_14 1 - 355426 356375 . 3 320,230,237 0,405,713 -chrIV 355426 356375 HC_gene_1788_tx_15 1 - 355426 356375 . 2 578,290 0,660 -chrIV 355426 356375 HC_gene_1788_tx_16 1 - 355426 356375 . 2 360,397 0,553 -chrIV 355426 356375 HC_gene_1788_tx_17 1 - 355426 356375 . 2 495,352 0,598 -chrIV 355426 356375 HC_gene_1788_tx_18 1 - 355426 356375 . 2 495,397 0,553 -chrIV 355426 356375 HC_gene_1788_tx_19 1 - 355426 356375 . 2 610,121 0,829 -chrIV 355426 356375 HC_gene_1788_tx_20 1 - 355426 356375 . 2 774,121 0,829 -chrIV 355426 356375 HC_gene_1788_tx_21 1 - 355426 356375 . 2 414,352 0,598 -chrIV 355426 356483 HC_gene_1788_tx_22 1 - 355426 356483 . 2 953,109 0,949 -chrIV 355426 356722 HC_gene_1788_tx_23 1 - 355426 356722 . 2 746,490 0,807 -chrIV 355426 356752 HC_gene_1788_tx_24 119 - 355426 356752 . 1 1327 0 -chrIV 355426 356752 HC_gene_1788_tx_25 1 - 355426 356752 . 2 594,667 0,660 -chrIV 355426 356752 HC_gene_1788_tx_26 1 - 355426 356752 . 2 579,667 0,660 -chrIV 355426 356752 HC_gene_1788_tx_27 1 - 355426 356752 . 2 962,311 0,1016 -chrIV 355426 356752 HC_gene_1788_tx_28 1 - 355426 356752 . 2 727,295 0,1032 -chrIV 355426 356752 HC_gene_1788_tx_29 1 - 355426 356752 . 2 129,354 0,973 -chrIV 355426 356896 HC_gene_1788_tx_30 1 - 355426 356896 . 2 745,528 0,943 -chrIV 355426 356896 HC_gene_1788_tx_31 1 - 355426 356896 . 2 431,1005 0,466 -chrIV 355426 356896 HC_gene_1788_tx_32 1 - 355426 356896 . 2 845,522 0,949 -chrIV 355426 356897 HC_gene_1788_tx_33 1 - 355426 356897 . 2 468,160 0,1312 -chrIV 355426 356909 HC_gene_1788_tx_34 1105 - 355426 356909 . 1 1484 0 -chrIV 355426 356909 HC_gene_1788_tx_35 1 - 355426 356909 . 2 1008,222 0,1262 -chrIV 355426 356909 HC_gene_1788_tx_36 1 - 355426 356909 . 2 520,835 0,649 -chrIV 355426 356909 HC_gene_1788_tx_37 1 - 355426 356909 . 2 748,222 0,1262 -chrIV 355426 356909 HC_gene_1788_tx_38 1 - 355426 356909 . 2 659,304 0,1180 -chrIV 355426 356909 HC_gene_1788_tx_39 1 - 355426 356909 . 2 813,222 0,1262 -chrIV 355426 356909 HC_gene_1788_tx_40 1 - 355426 356909 . 2 723,384 0,1100 -chrIV 355426 356909 HC_gene_1788_tx_41 1 - 355426 356909 . 2 1008,280 0,1204 -chrIV 355426 356909 HC_gene_1788_tx_42 2 - 355426 356909 . 2 996,364 0,1120 -chrIV 355426 356909 HC_gene_1788_tx_43 1 - 355426 356909 . 2 898,337 0,1147 -chrIV 355426 356909 HC_gene_1788_tx_44 1 - 355426 356909 . 2 1003,280 0,1204 -chrIV 355426 356909 HC_gene_1788_tx_45 1 - 355426 356909 . 2 712,222 0,1262 -chrIV 355426 356909 HC_gene_1788_tx_46 1 - 355426 356909 . 2 954,222 0,1262 -chrIV 355426 356909 HC_gene_1788_tx_47 1 - 355426 356909 . 2 962,452 0,1032 -chrIV 355426 356909 HC_gene_1788_tx_48 1 - 355426 356909 . 2 537,771 0,713 -chrIV 355426 356909 HC_gene_1788_tx_49 1 - 355426 356909 . 2 767,280 0,1204 -chrIV 355426 356909 HC_gene_1788_tx_50 1 - 355426 356909 . 2 1081,181 0,1303 -chrIV 355426 356909 HC_gene_1788_tx_51 1 - 355426 356909 . 2 767,364 0,1120 -chrIV 355426 356909 HC_gene_1788_tx_52 1 - 355426 356909 . 2 662,655 0,829 -chrIV 355426 356909 HC_gene_1788_tx_53 1 - 355426 356909 . 2 1051,222 0,1262 -chrIV 355426 356909 HC_gene_1788_tx_54 1 - 355426 356909 . 2 1081,235 0,1249 -chrIV 355426 356909 HC_gene_1788_tx_55 1 - 355426 356909 . 2 1157,246 0,1238 -chrIV 355426 356909 HC_gene_1788_tx_56 1 - 355426 356909 . 2 1194,113 0,1371 -chrIV 355426 356909 HC_gene_1788_tx_57 1 - 355426 356909 . 2 554,445 0,1039 -chrIV 355426 356909 HC_gene_1788_tx_58 1 - 355426 356909 . 2 672,283 0,1201 -chrIV 355426 356909 HC_gene_1788_tx_59 1 - 355426 356909 . 2 1002,222 0,1262 -chrIV 355426 356909 HC_gene_1788_tx_60 1 - 355426 356909 . 2 712,364 0,1120 -chrIV 355426 356909 HC_gene_1788_tx_61 1 - 355426 356909 . 2 870,304 0,1180 -chrIV 355426 356909 HC_gene_1788_tx_62 1 - 355426 356909 . 2 939,280 0,1204 -chrIV 355426 356909 HC_gene_1788_tx_63 1 - 355426 356909 . 2 320,1123 0,361 -chrIV 355426 356909 HC_gene_1788_tx_64 1 - 355426 356909 . 2 1228,196 0,1288 -chrIV 355426 356909 HC_gene_1788_tx_65 1 - 355426 356909 . 2 971,364 0,1120 -chrIV 355426 356909 HC_gene_1788_tx_66 1 - 355426 356909 . 2 672,364 0,1120 -chrIV 355426 356909 HC_gene_1788_tx_67 1 - 355426 356909 . 3 75,675,427 0,303,1057 -chrIV 355426 356909 HC_gene_1788_tx_68 1 - 355426 356909 . 2 537,742 0,742 -chrIV 355426 356909 HC_gene_1788_tx_69 1 - 355426 356909 . 2 103,1316 0,168 -chrIV 355426 356909 HC_gene_1788_tx_70 1 - 355426 356909 . 2 953,391 0,1093 -chrIV 355426 356909 HC_gene_1788_tx_71 1 - 355426 356909 . 2 1034,261 0,1223 -chrIV 355426 356909 HC_gene_1788_tx_72 1 - 355426 356909 . 2 1051,280 0,1204 -chrIV 355529 356909 HC_gene_1788_tx_73 1 - 355529 356909 . 1 1381 0 -chrIV 355530 355756 HC_gene_1788_tx_229 1 - 355530 355756 . 1 227 0 -chrIV 355530 355907 HC_gene_1788_tx_234 1 - 355530 355907 . 1 378 0 -chrIV 355530 356237 HC_gene_1788_tx_74 1 - 355530 356237 . 1 708 0 -chrIV 355530 356375 HC_gene_1788_tx_75 3 - 355530 356375 . 1 846 0 -chrIV 355530 356752 HC_gene_1788_tx_76 1 - 355530 356752 . 1 1223 0 -chrIV 355530 356909 HC_gene_1788_tx_77 3 - 355530 356909 . 1 1380 0 -chrIV 355531 356909 HC_gene_1788_tx_78 3 - 355531 356909 . 1 1379 0 -chrIV 355532 355907 HC_gene_1788_tx_235 1 - 355532 355907 . 1 376 0 -chrIV 355532 356116 HC_gene_1788_tx_79 1 - 355532 356116 . 1 585 0 -chrIV 355532 356909 HC_gene_1788_tx_80 2 - 355532 356909 . 1 1378 0 -chrIV 355533 356909 HC_gene_1788_tx_81 1 - 355533 356909 . 1 1377 0 -chrIV 355534 356116 HC_gene_1788_tx_82 1 - 355534 356116 . 1 583 0 -chrIV 355534 356375 HC_gene_1788_tx_83 3 - 355534 356375 . 1 842 0 -chrIV 355535 355907 HC_gene_1788_tx_236 2 - 355535 355907 . 1 373 0 -chrIV 355535 356375 HC_gene_1788_tx_84 3 - 355535 356375 . 1 841 0 -chrIV 355535 356909 HC_gene_1788_tx_85 1 - 355535 356909 . 1 1375 0 -chrIV 355536 356375 HC_gene_1788_tx_86 2 - 355536 356375 . 1 840 0 -chrIV 355536 356909 HC_gene_1788_tx_87 2 - 355536 356909 . 1 1374 0 -chrIV 355538 355907 HC_gene_1788_tx_237 1 - 355538 355907 . 1 370 0 -chrIV 355539 355756 HC_gene_1788_tx_230 1 - 355539 355756 . 1 218 0 -chrIV 355539 356909 HC_gene_1788_tx_88 1 - 355539 356909 . 1 1371 0 -chrIV 355540 356375 HC_gene_1788_tx_89 1 - 355540 356375 . 1 836 0 -chrIV 355541 356375 HC_gene_1788_tx_90 1 - 355541 356375 . 1 835 0 -chrIV 355541 356752 HC_gene_1788_tx_91 1 - 355541 356752 . 1 1212 0 -chrIV 355541 356909 HC_gene_1788_tx_92 1 - 355541 356909 . 1 1369 0 -chrIV 355544 356237 HC_gene_1788_tx_93 1 - 355544 356237 . 1 694 0 -chrIV 355545 356375 HC_gene_1788_tx_94 1 - 355545 356375 . 1 831 0 -chrIV 355546 356375 HC_gene_1788_tx_95 1 - 355546 356375 . 1 830 0 -chrIV 355546 356909 HC_gene_1788_tx_96 2 - 355546 356909 . 1 1364 0 -chrIV 355547 356375 HC_gene_1788_tx_97 1 - 355547 356375 . 1 829 0 -chrIV 355547 356909 HC_gene_1788_tx_98 3 - 355547 356909 . 1 1363 0 -chrIV 355548 356909 HC_gene_1788_tx_99 1 - 355548 356909 . 1 1362 0 -chrIV 355552 355907 HC_gene_1788_tx_238 1 - 355552 355907 . 1 356 0 -chrIV 355552 356375 HC_gene_1788_tx_100 2 - 355552 356375 . 1 824 0 -chrIV 355552 356909 HC_gene_1788_tx_101 2 - 355552 356909 . 1 1358 0 -chrIV 355552 356909 HC_gene_1788_tx_102 1 - 355552 356909 . 2 681,330 0,1028 -chrIV 355553 356909 HC_gene_1788_tx_103 1 - 355553 356909 . 1 1357 0 -chrIV 355554 355907 HC_gene_1788_tx_239 1 - 355554 355907 . 1 354 0 -chrIV 355557 355907 HC_gene_1788_tx_240 1 - 355557 355907 . 1 351 0 -chrIV 355557 356116 HC_gene_1788_tx_104 1 - 355557 356116 . 1 560 0 -chrIV 355557 356237 HC_gene_1788_tx_105 1 - 355557 356237 . 1 681 0 -chrIV 355557 356375 HC_gene_1788_tx_106 1 - 355557 356375 . 1 819 0 -chrIV 355557 356752 HC_gene_1788_tx_107 1 - 355557 356752 . 1 1196 0 -chrIV 355557 356909 HC_gene_1788_tx_108 2 - 355557 356909 . 1 1353 0 -chrIV 355558 355907 HC_gene_1788_tx_241 1 - 355558 355907 . 1 350 0 -chrIV 355558 356909 HC_gene_1788_tx_109 2 - 355558 356909 . 1 1352 0 -chrIV 355559 356752 HC_gene_1788_tx_110 1 - 355559 356752 . 1 1194 0 -chrIV 355559 356909 HC_gene_1788_tx_111 1 - 355559 356909 . 1 1351 0 -chrIV 355560 356375 HC_gene_1788_tx_112 2 - 355560 356375 . 1 816 0 -chrIV 355560 356909 HC_gene_1788_tx_113 2 - 355560 356909 . 1 1350 0 -chrIV 355561 356375 HC_gene_1788_tx_114 1 - 355561 356375 . 1 815 0 -chrIV 355561 356909 HC_gene_1788_tx_115 2 - 355561 356909 . 1 1349 0 -chrIV 355562 356237 HC_gene_1788_tx_116 1 - 355562 356237 . 1 676 0 -chrIV 355562 356375 HC_gene_1788_tx_117 1 - 355562 356375 . 1 814 0 -chrIV 355567 356375 HC_gene_1788_tx_118 2 - 355567 356375 . 1 809 0 -chrIV 355567 356909 HC_gene_1788_tx_119 1 - 355567 356909 . 1 1343 0 -chrIV 355568 355907 HC_gene_1788_tx_242 2 - 355568 355907 . 1 340 0 -chrIV 355568 356116 HC_gene_1788_tx_120 1 - 355568 356116 . 1 549 0 -chrIV 355568 356375 HC_gene_1788_tx_121 4 - 355568 356375 . 1 808 0 -chrIV 355568 356752 HC_gene_1788_tx_122 1 - 355568 356752 . 1 1185 0 -chrIV 355568 356909 HC_gene_1788_tx_123 8 - 355568 356909 . 1 1342 0 -chrIV 355569 355907 HC_gene_1788_tx_243 7 - 355569 355907 . 1 339 0 -chrIV 355569 356237 HC_gene_1788_tx_124 1 - 355569 356237 . 1 669 0 -chrIV 355569 356375 HC_gene_1788_tx_125 7 - 355569 356375 . 1 807 0 -chrIV 355569 356752 HC_gene_1788_tx_126 1 - 355569 356752 . 1 1184 0 -chrIV 355569 356909 HC_gene_1788_tx_127 13 - 355569 356909 . 1 1341 0 -chrIV 355570 355756 HC_gene_1788_tx_231 1 - 355570 355756 . 1 187 0 -chrIV 355570 355907 HC_gene_1788_tx_244 2 - 355570 355907 . 1 338 0 -chrIV 355570 356237 HC_gene_1788_tx_128 2 - 355570 356237 . 1 668 0 -chrIV 355570 356375 HC_gene_1788_tx_129 2 - 355570 356375 . 1 806 0 -chrIV 355570 356752 HC_gene_1788_tx_130 1 - 355570 356752 . 1 1183 0 -chrIV 355570 356909 HC_gene_1788_tx_131 5 - 355570 356909 . 1 1340 0 -chrIV 355571 356116 HC_gene_1788_tx_132 1 - 355571 356116 . 1 546 0 -chrIV 355571 356752 HC_gene_1788_tx_133 1 - 355571 356752 . 1 1182 0 -chrIV 355573 356375 HC_gene_1788_tx_134 2 - 355573 356375 . 1 803 0 -chrIV 355574 356116 HC_gene_1788_tx_135 1 - 355574 356116 . 1 543 0 -chrIV 355574 356909 HC_gene_1788_tx_136 1 - 355574 356909 . 1 1336 0 -chrIV 355576 356909 HC_gene_1788_tx_137 2 - 355576 356909 . 1 1334 0 -chrIV 355577 355907 HC_gene_1788_tx_245 1 - 355577 355907 . 1 331 0 -chrIV 355577 356375 HC_gene_1788_tx_138 1 - 355577 356375 . 1 799 0 -chrIV 355577 356752 HC_gene_1788_tx_139 1 - 355577 356752 . 1 1176 0 -chrIV 355577 356909 HC_gene_1788_tx_140 4 - 355577 356909 . 1 1333 0 -chrIV 355578 356375 HC_gene_1788_tx_141 1 - 355578 356375 . 1 798 0 -chrIV 355579 355907 HC_gene_1788_tx_246 1 - 355579 355907 . 1 329 0 -chrIV 355579 356752 HC_gene_1788_tx_142 1 - 355579 356752 . 1 1174 0 -chrIV 355579 356909 HC_gene_1788_tx_143 2 - 355579 356909 . 1 1331 0 -chrIV 355580 356375 HC_gene_1788_tx_144 2 - 355580 356375 . 1 796 0 -chrIV 355580 356909 HC_gene_1788_tx_145 1 - 355580 356909 . 1 1330 0 -chrIV 355581 356375 HC_gene_1788_tx_146 1 - 355581 356375 . 1 795 0 -chrIV 355581 356909 HC_gene_1788_tx_147 1 - 355581 356909 . 1 1329 0 -chrIV 355582 355907 HC_gene_1788_tx_247 1 - 355582 355907 . 1 326 0 -chrIV 355582 356375 HC_gene_1788_tx_148 4 - 355582 356375 . 1 794 0 -chrIV 355582 356752 HC_gene_1788_tx_149 3 - 355582 356752 . 1 1171 0 -chrIV 355582 356909 HC_gene_1788_tx_150 3 - 355582 356909 . 1 1328 0 -chrIV 355583 355756 HC_gene_1788_tx_232 1 - 355583 355756 . 1 174 0 -chrIV 355583 356375 HC_gene_1788_tx_151 2 - 355583 356375 . 1 793 0 -chrIV 355583 356752 HC_gene_1788_tx_152 1 - 355583 356752 . 1 1170 0 -chrIV 355583 356909 HC_gene_1788_tx_153 1 - 355583 356909 . 1 1327 0 -chrIV 355585 356909 HC_gene_1788_tx_154 1 - 355585 356909 . 1 1325 0 -chrIV 355587 356909 HC_gene_1788_tx_155 2 - 355587 356909 . 1 1323 0 -chrIV 355588 356909 HC_gene_1788_tx_156 1 - 355588 356909 . 1 1322 0 -chrIV 355589 355907 HC_gene_1788_tx_248 1 - 355589 355907 . 1 319 0 -chrIV 355589 356909 HC_gene_1788_tx_157 3 - 355589 356909 . 1 1321 0 -chrIV 355590 355907 HC_gene_1788_tx_249 1 - 355590 355907 . 1 318 0 -chrIV 355590 356237 HC_gene_1788_tx_158 1 - 355590 356237 . 1 648 0 -chrIV 355590 356375 HC_gene_1788_tx_159 5 - 355590 356375 . 1 786 0 -chrIV 355590 356909 HC_gene_1788_tx_160 4 - 355590 356909 . 1 1320 0 -chrIV 355591 355756 HC_gene_1788_tx_233 1 - 355591 355756 . 1 166 0 -chrIV 355591 355907 HC_gene_1788_tx_250 1 - 355591 355907 . 1 317 0 -chrIV 355591 356116 HC_gene_1788_tx_161 3 - 355591 356116 . 1 526 0 -chrIV 355591 356237 HC_gene_1788_tx_162 1 - 355591 356237 . 1 647 0 -chrIV 355591 356375 HC_gene_1788_tx_163 3 - 355591 356375 . 1 785 0 -chrIV 355591 356909 HC_gene_1788_tx_164 6 - 355591 356909 . 1 1319 0 -chrIV 355592 356375 HC_gene_1788_tx_165 1 - 355592 356375 . 1 784 0 -chrIV 355592 356752 HC_gene_1788_tx_166 1 - 355592 356752 . 1 1161 0 -chrIV 355592 356909 HC_gene_1788_tx_167 5 - 355592 356909 . 1 1318 0 -chrIV 355593 356375 HC_gene_1788_tx_168 1 - 355593 356375 . 1 783 0 -chrIV 355594 355907 HC_gene_1788_tx_251 5 - 355594 355907 . 1 314 0 -chrIV 355594 356375 HC_gene_1788_tx_169 1 - 355594 356375 . 1 782 0 -chrIV 355594 356909 HC_gene_1788_tx_170 4 - 355594 356909 . 1 1316 0 -chrIV 355595 355907 HC_gene_1788_tx_252 1 - 355595 355907 . 1 313 0 -chrIV 355595 356375 HC_gene_1788_tx_171 3 - 355595 356375 . 1 781 0 -chrIV 355595 356909 HC_gene_1788_tx_172 6 - 355595 356909 . 1 1315 0 -chrIV 355596 356375 HC_gene_1788_tx_173 3 - 355596 356375 . 1 780 0 -chrIV 355596 356909 HC_gene_1788_tx_174 2 - 355596 356909 . 1 1314 0 -chrIV 355597 356375 HC_gene_1788_tx_175 1 - 355597 356375 . 1 779 0 -chrIV 355597 356909 HC_gene_1788_tx_176 2 - 355597 356909 . 1 1313 0 -chrIV 355598 355907 HC_gene_1788_tx_253 1 - 355598 355907 . 1 310 0 -chrIV 355598 356237 HC_gene_1788_tx_177 1 - 355598 356237 . 1 640 0 -chrIV 355598 356375 HC_gene_1788_tx_178 2 - 355598 356375 . 1 778 0 -chrIV 355598 356909 HC_gene_1788_tx_179 3 - 355598 356909 . 1 1312 0 -chrIV 355599 355907 HC_gene_1788_tx_254 1 - 355599 355907 . 1 309 0 -chrIV 355599 356375 HC_gene_1788_tx_180 1 - 355599 356375 . 1 777 0 -chrIV 355600 355907 HC_gene_1788_tx_255 3 - 355600 355907 . 1 308 0 -chrIV 355600 356375 HC_gene_1788_tx_181 2 - 355600 356375 . 1 776 0 -chrIV 355600 356752 HC_gene_1788_tx_182 1 - 355600 356752 . 1 1153 0 -chrIV 355600 356909 HC_gene_1788_tx_183 2 - 355600 356909 . 1 1310 0 -chrIV 355601 356752 HC_gene_1788_tx_184 1 - 355601 356752 . 1 1152 0 -chrIV 355601 356909 HC_gene_1788_tx_185 4 - 355601 356909 . 1 1309 0 -chrIV 355602 356237 HC_gene_1788_tx_186 1 - 355602 356237 . 1 636 0 -chrIV 355602 356375 HC_gene_1788_tx_187 2 - 355602 356375 . 1 774 0 -chrIV 355602 356909 HC_gene_1788_tx_188 3 - 355602 356909 . 1 1308 0 -chrIV 355603 355907 HC_gene_1788_tx_256 2 - 355603 355907 . 1 305 0 -chrIV 355603 356237 HC_gene_1788_tx_189 1 - 355603 356237 . 1 635 0 -chrIV 355603 356375 HC_gene_1788_tx_190 1 - 355603 356375 . 1 773 0 -chrIV 355603 356909 HC_gene_1788_tx_191 3 - 355603 356909 . 1 1307 0 -chrIV 355605 356909 HC_gene_1788_tx_192 1 - 355605 356909 . 1 1305 0 -chrIV 355607 356909 HC_gene_1788_tx_193 1 - 355607 356909 . 1 1303 0 -chrIV 355608 356116 HC_gene_1788_tx_194 1 - 355608 356116 . 1 509 0 -chrIV 355608 356909 HC_gene_1788_tx_195 2 - 355608 356909 . 1 1302 0 -chrIV 355611 356752 HC_gene_1788_tx_196 1 - 355611 356752 . 1 1142 0 -chrIV 355612 356375 HC_gene_1788_tx_197 1 - 355612 356375 . 1 764 0 -chrIV 355613 356375 HC_gene_1788_tx_198 1 - 355613 356375 . 1 763 0 -chrIV 355613 356752 HC_gene_1788_tx_199 1 - 355613 356752 . 1 1140 0 -chrIV 355613 356909 HC_gene_1788_tx_200 1 - 355613 356909 . 1 1297 0 -chrIV 355615 355907 HC_gene_1788_tx_257 1 - 355615 355907 . 1 293 0 -chrIV 355615 356116 HC_gene_1788_tx_201 1 - 355615 356116 . 1 502 0 -chrIV 355615 356909 HC_gene_1788_tx_202 2 - 355615 356909 . 1 1295 0 -chrIV 355616 356237 HC_gene_1788_tx_203 1 - 355616 356237 . 1 622 0 -chrIV 355616 356442 HC_gene_1788_tx_204 1 - 355616 356442 . 2 737,68 0,759 -chrIV 355616 356909 HC_gene_1788_tx_205 1 - 355616 356909 . 1 1294 0 -chrIV 355617 356375 HC_gene_1788_tx_206 1 - 355617 356375 . 1 759 0 -chrIV 355617 356909 HC_gene_1788_tx_207 6 - 355617 356909 . 1 1293 0 -chrIV 355618 355907 HC_gene_1788_tx_258 5 - 355618 355907 . 1 290 0 -chrIV 355618 356237 HC_gene_1788_tx_208 2 - 355618 356237 . 1 620 0 -chrIV 355618 356375 HC_gene_1788_tx_209 6 - 355618 356375 . 1 758 0 -chrIV 355618 356752 HC_gene_1788_tx_210 1 - 355618 356752 . 1 1135 0 -chrIV 355618 356909 HC_gene_1788_tx_211 2 - 355618 356909 . 1 1292 0 -chrIV 355619 356375 HC_gene_1788_tx_212 1 - 355619 356375 . 1 757 0 -chrIV 355622 355907 HC_gene_1788_tx_259 1 - 355622 355907 . 1 286 0 -chrIV 355622 356375 HC_gene_1788_tx_213 1 - 355622 356375 . 1 754 0 -chrIV 355622 356909 HC_gene_1788_tx_214 1 - 355622 356909 . 1 1288 0 -chrIV 355624 356752 HC_gene_1788_tx_215 1 - 355624 356752 . 1 1129 0 -chrIV 355624 356909 HC_gene_1788_tx_216 1 - 355624 356909 . 2 246,779 0,507 -chrIV 355624 356909 HC_gene_1788_tx_217 4 - 355624 356909 . 1 1286 0 -chrIV 355625 356237 HC_gene_1788_tx_218 2 - 355625 356237 . 1 613 0 -chrIV 355625 356375 HC_gene_1788_tx_219 1 - 355625 356375 . 1 751 0 -chrIV 355625 356752 HC_gene_1788_tx_220 2 - 355625 356752 . 1 1128 0 -chrIV 355625 356909 HC_gene_1788_tx_221 1 - 355625 356909 . 1 1285 0 -chrIV 355626 355907 HC_gene_1788_tx_260 1 - 355626 355907 . 1 282 0 -chrIV 355626 356375 HC_gene_1788_tx_222 2 - 355626 356375 . 1 750 0 -chrIV 355626 356909 HC_gene_1788_tx_223 4 - 355626 356909 . 1 1284 0 -chrIV 355628 356375 HC_gene_1788_tx_224 2 - 355628 356375 . 1 748 0 -chrIV 355630 355907 HC_gene_1788_tx_261 2 - 355630 355907 . 1 278 0 -chrIV 355630 356375 HC_gene_1788_tx_225 1 - 355630 356375 . 1 746 0 -chrIV 355631 356909 HC_gene_1788_tx_226 1 - 355631 356909 . 1 1279 0 -chrIV 355634 355907 HC_gene_1788_tx_262 1 - 355634 355907 . 1 274 0 -chrIV 355636 355907 HC_gene_1788_tx_263 1 - 355636 355907 . 1 272 0 -chrIV 355636 356116 HC_gene_1788_tx_227 1 - 355636 356116 . 1 481 0 -chrIV 355636 356375 HC_gene_1788_tx_228 1 - 355636 356375 . 1 740 0 -chrIV 355748 357654 LC_gene_1177_tx_1 1 + 355748 357654 . 1 1907 0 -chrIV 357714 358007 HC_gene_1178_tx_1 7 + 357714 358007 . 1 294 0 -chrIV 357714 359092 HC_gene_1178_tx_2 1 + 357714 359092 . 1 1379 0 -chrIV 358602 358882 MC_gene_1789_tx_1 1 - 358602 358882 . 1 281 0 -chrIV 359579 359817 MC_gene_1179_tx_1 1 + 359579 359817 . 1 239 0 -chrIV 359746 360150 HC_gene_1790_tx_1 12 - 359746 360150 . 1 405 0 -chrIV 359746 361363 HC_gene_1790_tx_2 1 - 359746 361363 . 2 1337,183 0,1435 -chrIV 359746 361363 HC_gene_1790_tx_3 35 - 359746 361363 . 1 1618 0 -chrIV 359746 361363 HC_gene_1790_tx_4 1 - 359746 361363 . 2 565,990 0,628 -chrIV 359805 360884 MC_gene_1180_tx_1 1 + 359805 360884 . 1 1080 0 -chrIV 361509 361779 HC_gene_1791_tx_1 24 - 361509 361779 . 1 271 0 -chrIV 361509 361926 HC_gene_1791_tx_2 37 - 361509 361926 . 1 418 0 -chrIV 361509 362261 HC_gene_1791_tx_3 32 - 361509 362261 . 1 753 0 -chrIV 361509 362455 HC_gene_1791_tx_4 98 - 361509 362455 . 1 947 0 -chrIV 361781 362643 HC_gene_1181_tx_1 1 + 361781 362643 . 1 863 0 -chrIV 361863 362643 HC_gene_1181_tx_2 1 + 361863 362643 . 1 781 0 -chrIV 362399 363603 HC_gene_1792_tx_1 8 - 362399 363603 . 1 1205 0 -chrIV 362587 362853 HC_gene_1792_tx_3 13 - 362587 362853 . 1 267 0 -chrIV 362587 362961 HC_gene_1792_tx_4 27 - 362587 362961 . 1 375 0 -chrIV 362587 363603 HC_gene_1792_tx_2 197 - 362587 363603 . 1 1017 0 -chrIV 363922 364909 HC_gene_1182_tx_1 219 + 363922 364909 . 1 988 0 -chrIV 363922 365046 HC_gene_1182_tx_2 19 + 363922 365046 . 1 1125 0 -chrIV 364132 364909 HC_gene_1182_tx_3 23 + 364132 364909 . 1 778 0 -chrIV 364191 364909 HC_gene_1182_tx_4 3 + 364191 364909 . 1 719 0 -chrIV 364265 364909 HC_gene_1182_tx_5 9 + 364265 364909 . 1 645 0 -chrIV 364265 365046 HC_gene_1182_tx_6 3 + 364265 365046 . 1 782 0 -chrIV 364352 364909 HC_gene_1182_tx_7 21 + 364352 364909 . 1 558 0 -chrIV 364852 365405 HC_gene_1793_tx_1 3 - 364852 365405 . 1 554 0 -chrIV 364852 365480 HC_gene_1793_tx_2 8 - 364852 365480 . 1 629 0 -chrIV 364852 365714 HC_gene_1793_tx_3 5 - 364852 365714 . 1 863 0 -chrIV 365499 365877 LC_gene_1183_tx_1 1 + 365499 365877 . 1 379 0 -chrIV 365817 365974 HC_gene_1794_tx_1 5 - 365817 365974 . 1 158 0 -chrIV 365914 365974 HC_gene_1794_tx_2 1 - 365914 365974 . 1 61 0 -chrIV 365914 366172 HC_gene_1794_tx_3 2 - 365914 366172 . 1 259 0 -chrIV 366363 366745 HC_gene_1184_tx_1 1 + 366363 366745 . 1 383 0 -chrIV 366622 367655 HC_gene_1795_tx_1 44 - 366622 367655 . 1 1034 0 -chrIV 366622 368262 HC_gene_1795_tx_2 118 - 366622 368262 . 1 1641 0 -chrIV 366622 368262 HC_gene_1795_tx_3 1 - 366622 368262 . 2 1285,195 0,1446 -chrIV 366622 368262 HC_gene_1795_tx_4 1 - 366622 368262 . 2 1243,226 0,1415 -chrIV 369312 371058 HC_gene_1185_tx_1 1 + 369312 371058 . 1 1747 0 -chrIV 369565 371058 HC_gene_1185_tx_2 67 + 369565 371058 . 1 1494 0 -chrIV 369565 371058 HC_gene_1185_tx_3 1 + 369565 371058 . 2 1050,392 0,1102 -chrIV 369565 371058 HC_gene_1185_tx_4 1 + 369565 371058 . 2 861,491 0,1003 -chrIV 369720 371058 HC_gene_1185_tx_5 6 + 369720 371058 . 1 1339 0 -chrIV 370267 371058 HC_gene_1185_tx_6 9 + 370267 371058 . 1 792 0 -chrIV 370706 371058 HC_gene_1185_tx_7 6 + 370706 371058 . 1 353 0 -chrIV 371172 371949 HC_gene_1186_tx_1 16 + 371172 371949 . 1 778 0 -chrIV 371172 371949 HC_gene_1186_tx_2 1 + 371172 371949 . 2 545,176 0,602 -chrIV 371172 372039 HC_gene_1186_tx_3 284 + 371172 372039 . 1 868 0 -chrIV 371172 372039 HC_gene_1186_tx_4 1 + 371172 372039 . 2 273,544 0,324 -chrIV 371172 372039 HC_gene_1186_tx_5 1 + 371172 372039 . 2 667,155 0,713 -chrIV 371172 372039 HC_gene_1186_tx_6 1 + 371172 372039 . 2 640,148 0,720 -chrIV 371172 372039 HC_gene_1186_tx_7 1 + 371172 372039 . 2 303,485 0,383 -chrIV 371306 371949 HC_gene_1186_tx_8 1 + 371306 371949 . 2 328,235 0,409 -chrIV 371306 371949 HC_gene_1186_tx_9 1 + 371306 371949 . 1 644 0 -chrIV 371306 372039 HC_gene_1186_tx_10 27 + 371306 372039 . 1 734 0 -chrIV 371504 371949 HC_gene_1186_tx_11 4 + 371504 371949 . 1 446 0 -chrIV 371504 372039 HC_gene_1186_tx_12 66 + 371504 372039 . 1 536 0 -chrIV 371584 372003 HC_gene_1796_tx_1 1 - 371584 372003 . 1 420 0 -chrIV 372203 372662 HC_gene_1187_tx_1 248 + 372203 372662 . 1 460 0 -chrIV 372300 372662 HC_gene_1187_tx_2 10 + 372300 372662 . 1 363 0 -chrIV 372574 373597 HC_gene_1797_tx_1 4 - 372574 373597 . 1 1024 0 -chrIV 372574 373745 HC_gene_1797_tx_2 40 - 372574 373745 . 1 1172 0 -chrIV 373890 375300 HC_gene_1798_tx_1 12 - 373890 375300 . 1 1411 0 -chrIV 373943 374545 LC_gene_1188_tx_1 1 + 373943 374545 . 1 603 0 -chrIV 375200 375300 HC_gene_1798_tx_2 1 - 375200 375300 . 1 101 0 -chrIV 375200 376527 HC_gene_1798_tx_3 5 - 375200 376527 . 1 1328 0 -chrIV 375200 376527 HC_gene_1798_tx_4 1 - 375200 376527 . 2 813,345 0,983 -chrIV 375352 376527 HC_gene_1798_tx_5 23 - 375352 376527 . 1 1176 0 -chrIV 375366 375739 LC_gene_1189_tx_1 1 + 375366 375739 . 1 374 0 -chrIV 375555 376527 HC_gene_1798_tx_6 5 - 375555 376527 . 1 973 0 -chrIV 376636 378258 HC_gene_1799_tx_1 1 - 376636 378258 . 1 1623 0 -chrIV 376636 378506 HC_gene_1799_tx_2 14 - 376636 378506 . 1 1871 0 -chrIV 376636 378506 HC_gene_1799_tx_3 1 - 376636 378506 . 2 1378,369 0,1502 -chrIV 377719 378506 HC_gene_1799_tx_4 1 - 377719 378506 . 1 788 0 -chrIV 378064 378879 MC_gene_1190_tx_1 1 + 378064 378879 . 1 816 0 -chrIV 378749 379203 HC_gene_1800_tx_1 24 - 378749 379203 . 1 455 0 -chrIV 378749 379302 HC_gene_1800_tx_2 7 - 378749 379302 . 1 554 0 -chrIV 378749 379457 HC_gene_1800_tx_3 16 - 378749 379457 . 1 709 0 -chrIV 378749 379656 HC_gene_1800_tx_4 10 - 378749 379656 . 1 908 0 -chrIV 378749 380867 HC_gene_1800_tx_5 5 - 378749 380867 . 1 2119 0 -chrIV 378749 381180 HC_gene_1800_tx_6 2 - 378749 381180 . 1 2432 0 -chrIV 378749 381180 HC_gene_1800_tx_7 1 - 378749 381180 . 3 799,871,505 0,1002,1927 -chrIV 378749 381257 HC_gene_1800_tx_8 1 - 378749 381257 . 1 2509 0 -chrIV 378749 381466 HC_gene_1800_tx_9 33 - 378749 381466 . 1 2718 0 -chrIV 378749 381466 HC_gene_1800_tx_10 1 - 378749 381466 . 2 1383,1253 0,1465 -chrIV 378794 379136 MC_gene_1191_tx_1 1 + 378794 379136 . 1 343 0 -chrIV 381679 381953 HC_gene_1192_tx_1 6 + 381679 381953 . 1 275 0 -chrIV 381848 385125 HC_gene_1801_tx_1 1 - 381848 385125 . 2 3045,166 0,3112 -chrIV 381848 385766 HC_gene_1801_tx_2 1 - 381848 385766 . 2 2901,321 0,3598 -chrIV 381848 385766 HC_gene_1801_tx_3 1 - 381848 385766 . 2 3153,702 0,3217 -chrIV 381848 385766 HC_gene_1801_tx_4 1 - 381848 385766 . 2 3060,777 0,3142 -chrIV 381848 385766 HC_gene_1801_tx_5 9 - 381848 385766 . 1 3919 0 -chrIV 381848 385766 HC_gene_1801_tx_6 1 - 381848 385766 . 2 2776,377 0,3542 -chrIV 381848 385766 HC_gene_1801_tx_7 1 - 381848 385766 . 2 969,2874 0,1045 -chrIV 381848 385766 HC_gene_1801_tx_8 1 - 381848 385766 . 2 3165,720 0,3199 -chrIV 381848 385766 HC_gene_1801_tx_9 1 - 381848 385766 . 2 2347,172 0,3747 -chrIV 381848 385766 HC_gene_1801_tx_10 1 - 381848 385766 . 3 2159,69,508 0,2635,3411 -chrIV 386237 387515 HC_gene_1193_tx_1 1 + 386237 387515 . 1 1279 0 -chrIV 387176 388886 HC_gene_1802_tx_1 1 - 387176 388886 . 1 1711 0 -chrIV 387244 387515 HC_gene_1193_tx_2 4 + 387244 387515 . 1 272 0 -chrIV 387244 389153 HC_gene_1193_tx_3 2 + 387244 389153 . 1 1910 0 -chrIV 387297 388886 HC_gene_1802_tx_2 9 - 387297 388886 . 1 1590 0 -chrIV 387366 388886 HC_gene_1802_tx_3 2 - 387366 388886 . 1 1521 0 -chrIV 389019 390595 HC_gene_1803_tx_1 8 - 389019 390595 . 1 1577 0 -chrIV 389019 390595 HC_gene_1803_tx_2 1 - 389019 390595 . 2 1011,495 0,1082 -chrIV 389019 390699 HC_gene_1803_tx_3 1 - 389019 390699 . 1 1681 0 -chrIV 389019 392342 HC_gene_1803_tx_4 2 - 389019 392342 . 1 3324 0 -chrIV 389019 392342 HC_gene_1803_tx_5 1 - 389019 392342 . 2 1842,112 0,3212 -chrIV 392457 393749 HC_gene_1804_tx_1 1 - 392457 393749 . 1 1293 0 -chrIV 392457 393952 HC_gene_1804_tx_2 4 - 392457 393952 . 1 1496 0 -chrIV 394164 397296 HC_gene_1194_tx_1 21 + 394164 397296 . 1 3133 0 -chrIV 394280 397296 HC_gene_1194_tx_2 1 + 394280 397296 . 1 3017 0 -chrIV 394280 397296 HC_gene_1194_tx_3 1 + 394280 397296 . 3 503,876,907 0,985,2110 -chrIV 395312 397296 HC_gene_1194_tx_4 3 + 395312 397296 . 1 1985 0 -chrIV 396030 397296 HC_gene_1194_tx_5 5 + 396030 397296 . 1 1267 0 -chrIV 396667 397296 HC_gene_1194_tx_6 8 + 396667 397296 . 1 630 0 -chrIV 396731 397296 HC_gene_1194_tx_7 7 + 396731 397296 . 1 566 0 -chrIV 396814 397296 HC_gene_1194_tx_8 14 + 396814 397296 . 1 483 0 -chrIV 397470 399197 HC_gene_1195_tx_1 17 + 397470 399197 . 1 1728 0 -chrIV 398472 399100 MC_gene_1805_tx_1 1 - 398472 399100 . 1 629 0 -chrIV 399319 400760 HC_gene_1196_tx_1 3 + 399319 400760 . 1 1442 0 -chrIV 399319 400767 HC_gene_1196_tx_2 2 + 399319 400767 . 2 43,1283 0,166 -chrIV 399319 400769 HC_gene_1196_tx_3 1 + 399319 400769 . 1 1451 0 -chrIV 399319 400769 HC_gene_1196_tx_4 1 + 399319 400769 . 2 43,1285 0,166 -chrIV 399319 400771 HC_gene_1196_tx_5 1 + 399319 400771 . 1 1453 0 -chrIV 399319 400772 HC_gene_1196_tx_6 1 + 399319 400772 . 2 43,1288 0,166 -chrIV 399319 400775 HC_gene_1196_tx_7 1 + 399319 400775 . 2 43,1291 0,166 -chrIV 399319 400779 HC_gene_1196_tx_8 1 + 399319 400779 . 2 43,1295 0,166 -chrIV 399319 400782 HC_gene_1196_tx_9 1 + 399319 400782 . 2 43,1298 0,166 -chrIV 399319 400783 HC_gene_1196_tx_10 2 + 399319 400783 . 1 1465 0 -chrIV 399319 400798 HC_gene_1196_tx_11 1 + 399319 400798 . 2 43,1314 0,166 -chrIV 399319 400939 HC_gene_1196_tx_12 5 + 399319 400939 . 2 43,1455 0,166 -chrIV 399319 400939 HC_gene_1196_tx_13 4 + 399319 400939 . 1 1621 0 -chrIV 399479 400760 HC_gene_1196_tx_14 2 + 399479 400760 . 1 1282 0 -chrIV 399479 400763 HC_gene_1196_tx_15 3 + 399479 400763 . 1 1285 0 -chrIV 399479 400765 HC_gene_1196_tx_16 2 + 399479 400765 . 1 1287 0 -chrIV 399479 400767 HC_gene_1196_tx_17 8 + 399479 400767 . 1 1289 0 -chrIV 399479 400768 HC_gene_1196_tx_18 1 + 399479 400768 . 1 1290 0 -chrIV 399479 400769 HC_gene_1196_tx_19 1 + 399479 400769 . 1 1291 0 -chrIV 399479 400771 HC_gene_1196_tx_20 1 + 399479 400771 . 1 1293 0 -chrIV 399479 400772 HC_gene_1196_tx_21 11 + 399479 400772 . 1 1294 0 -chrIV 399479 400775 HC_gene_1196_tx_22 3 + 399479 400775 . 1 1297 0 -chrIV 399479 400776 HC_gene_1196_tx_23 3 + 399479 400776 . 1 1298 0 -chrIV 399479 400776 HC_gene_1196_tx_24 1 + 399479 400776 . 2 274,672 0,626 -chrIV 399479 400777 HC_gene_1196_tx_25 2 + 399479 400777 . 1 1299 0 -chrIV 399479 400779 HC_gene_1196_tx_26 2 + 399479 400779 . 1 1301 0 -chrIV 399479 400782 HC_gene_1196_tx_27 2 + 399479 400782 . 1 1304 0 -chrIV 399479 400783 HC_gene_1196_tx_28 5 + 399479 400783 . 1 1305 0 -chrIV 399479 400785 HC_gene_1196_tx_29 1 + 399479 400785 . 1 1307 0 -chrIV 399479 400789 HC_gene_1196_tx_30 1 + 399479 400789 . 1 1311 0 -chrIV 399479 400793 HC_gene_1196_tx_31 2 + 399479 400793 . 1 1315 0 -chrIV 399479 400795 HC_gene_1196_tx_32 1 + 399479 400795 . 1 1317 0 -chrIV 399479 400796 HC_gene_1196_tx_33 1 + 399479 400796 . 1 1318 0 -chrIV 399479 400798 HC_gene_1196_tx_34 2 + 399479 400798 . 1 1320 0 -chrIV 399479 400939 HC_gene_1196_tx_35 42 + 399479 400939 . 1 1461 0 -chrIV 399583 400760 HC_gene_1196_tx_36 2 + 399583 400760 . 1 1178 0 -chrIV 399583 400765 HC_gene_1196_tx_37 1 + 399583 400765 . 1 1183 0 -chrIV 399583 400767 HC_gene_1196_tx_38 1 + 399583 400767 . 1 1185 0 -chrIV 399583 400782 HC_gene_1196_tx_39 2 + 399583 400782 . 1 1200 0 -chrIV 399583 400783 HC_gene_1196_tx_40 1 + 399583 400783 . 1 1201 0 -chrIV 399583 400799 HC_gene_1196_tx_41 1 + 399583 400799 . 1 1217 0 -chrIV 399583 400800 HC_gene_1196_tx_42 1 + 399583 400800 . 1 1218 0 -chrIV 399583 400939 HC_gene_1196_tx_43 4 + 399583 400939 . 1 1357 0 -chrIV 399772 400764 HC_gene_1196_tx_44 1 + 399772 400764 . 1 993 0 -chrIV 399772 400767 HC_gene_1196_tx_45 1 + 399772 400767 . 1 996 0 -chrIV 399772 400768 HC_gene_1196_tx_46 1 + 399772 400768 . 1 997 0 -chrIV 399772 400769 HC_gene_1196_tx_47 1 + 399772 400769 . 1 998 0 -chrIV 399772 400770 HC_gene_1196_tx_48 1 + 399772 400770 . 1 999 0 -chrIV 399772 400772 HC_gene_1196_tx_49 1 + 399772 400772 . 1 1001 0 -chrIV 399772 400773 HC_gene_1196_tx_50 1 + 399772 400773 . 1 1002 0 -chrIV 399772 400775 HC_gene_1196_tx_51 1 + 399772 400775 . 1 1004 0 -chrIV 399772 400778 HC_gene_1196_tx_52 1 + 399772 400778 . 1 1007 0 -chrIV 399772 400782 HC_gene_1196_tx_53 1 + 399772 400782 . 1 1011 0 -chrIV 399772 400795 HC_gene_1196_tx_54 1 + 399772 400795 . 1 1024 0 -chrIV 399772 400939 HC_gene_1196_tx_55 4 + 399772 400939 . 1 1168 0 -chrIV 399944 400763 HC_gene_1196_tx_56 1 + 399944 400763 . 1 820 0 -chrIV 399944 400774 HC_gene_1196_tx_57 1 + 399944 400774 . 1 831 0 -chrIV 399944 400779 HC_gene_1196_tx_58 1 + 399944 400779 . 1 836 0 -chrIV 399944 400783 HC_gene_1196_tx_59 1 + 399944 400783 . 1 840 0 -chrIV 399944 400785 HC_gene_1196_tx_60 1 + 399944 400785 . 1 842 0 -chrIV 399944 400795 HC_gene_1196_tx_61 1 + 399944 400795 . 1 852 0 -chrIV 399944 400939 HC_gene_1196_tx_62 3 + 399944 400939 . 1 996 0 -chrIV 400014 400764 HC_gene_1196_tx_63 1 + 400014 400764 . 1 751 0 -chrIV 400014 400767 HC_gene_1196_tx_64 2 + 400014 400767 . 1 754 0 -chrIV 400014 400768 HC_gene_1196_tx_65 1 + 400014 400768 . 1 755 0 -chrIV 400014 400772 HC_gene_1196_tx_66 1 + 400014 400772 . 1 759 0 -chrIV 400014 400774 HC_gene_1196_tx_67 1 + 400014 400774 . 1 761 0 -chrIV 400014 400775 HC_gene_1196_tx_68 1 + 400014 400775 . 1 762 0 -chrIV 400014 400779 HC_gene_1196_tx_69 1 + 400014 400779 . 1 766 0 -chrIV 400014 400780 HC_gene_1196_tx_70 1 + 400014 400780 . 1 767 0 -chrIV 400014 400781 HC_gene_1196_tx_71 1 + 400014 400781 . 1 768 0 -chrIV 400014 400782 HC_gene_1196_tx_72 1 + 400014 400782 . 1 769 0 -chrIV 400014 400783 HC_gene_1196_tx_73 1 + 400014 400783 . 1 770 0 -chrIV 400014 400798 HC_gene_1196_tx_74 1 + 400014 400798 . 1 785 0 -chrIV 400014 400939 HC_gene_1196_tx_75 8 + 400014 400939 . 1 926 0 -chrIV 400302 400763 HC_gene_1196_tx_76 1 + 400302 400763 . 1 462 0 -chrIV 400302 400767 HC_gene_1196_tx_77 4 + 400302 400767 . 1 466 0 -chrIV 400302 400772 HC_gene_1196_tx_78 3 + 400302 400772 . 1 471 0 -chrIV 400302 400774 HC_gene_1196_tx_79 1 + 400302 400774 . 1 473 0 -chrIV 400302 400780 HC_gene_1196_tx_80 1 + 400302 400780 . 1 479 0 -chrIV 400302 400782 HC_gene_1196_tx_81 2 + 400302 400782 . 1 481 0 -chrIV 400302 400783 HC_gene_1196_tx_82 1 + 400302 400783 . 1 482 0 -chrIV 400302 400789 HC_gene_1196_tx_83 1 + 400302 400789 . 1 488 0 -chrIV 400302 400798 HC_gene_1196_tx_84 1 + 400302 400798 . 1 497 0 -chrIV 400302 400939 HC_gene_1196_tx_99 15 + 400302 400939 . 1 638 0 -chrIV 400375 400760 HC_gene_1196_tx_85 2 + 400375 400760 . 1 386 0 -chrIV 400375 400763 HC_gene_1196_tx_86 1 + 400375 400763 . 1 389 0 -chrIV 400375 400766 HC_gene_1196_tx_87 1 + 400375 400766 . 1 392 0 -chrIV 400375 400767 HC_gene_1196_tx_88 2 + 400375 400767 . 1 393 0 -chrIV 400375 400771 HC_gene_1196_tx_89 1 + 400375 400771 . 1 397 0 -chrIV 400375 400772 HC_gene_1196_tx_90 1 + 400375 400772 . 1 398 0 -chrIV 400375 400774 HC_gene_1196_tx_91 1 + 400375 400774 . 1 400 0 -chrIV 400375 400775 HC_gene_1196_tx_92 1 + 400375 400775 . 1 401 0 -chrIV 400375 400779 HC_gene_1196_tx_93 2 + 400375 400779 . 1 405 0 -chrIV 400375 400782 HC_gene_1196_tx_94 1 + 400375 400782 . 1 408 0 -chrIV 400375 400783 HC_gene_1196_tx_95 1 + 400375 400783 . 1 409 0 -chrIV 400375 400784 HC_gene_1196_tx_96 1 + 400375 400784 . 1 410 0 -chrIV 400375 400793 HC_gene_1196_tx_97 1 + 400375 400793 . 1 419 0 -chrIV 400375 400798 HC_gene_1196_tx_98 1 + 400375 400798 . 1 424 0 -chrIV 400375 400939 HC_gene_1196_tx_100 7 + 400375 400939 . 1 565 0 -chrIV 400846 403402 HC_gene_1806_tx_1 5 - 400846 403402 . 1 2557 0 -chrIV 403489 404507 HC_gene_1807_tx_1 1 - 403489 404507 . 1 1019 0 -chrIV 403489 404782 HC_gene_1807_tx_4 1 - 403489 404782 . 1 1294 0 -chrIV 403554 403985 HC_gene_1807_tx_7 4 - 403554 403985 . 1 432 0 -chrIV 403554 404176 HC_gene_1807_tx_8 4 - 403554 404176 . 1 623 0 -chrIV 403554 404380 HC_gene_1807_tx_2 9 - 403554 404380 . 1 827 0 -chrIV 403554 404507 HC_gene_1807_tx_3 11 - 403554 404507 . 1 954 0 -chrIV 403554 404782 HC_gene_1807_tx_5 5 - 403554 404782 . 1 1229 0 -chrIV 403554 405004 HC_gene_1807_tx_6 29 - 403554 405004 . 1 1451 0 -chrIV 404491 405238 MC_gene_1197_tx_1 1 + 404491 405238 . 1 748 0 -chrIV 405232 406815 HC_gene_1808_tx_1 2 - 405232 406815 . 1 1584 0 -chrIV 405232 406948 HC_gene_1808_tx_2 1 - 405232 406948 . 1 1717 0 -chrIV 405232 407403 HC_gene_1808_tx_3 11 - 405232 407403 . 1 2172 0 -chrIV 405289 407942 MC_gene_1198_tx_1 1 + 405289 407942 . 1 2654 0 -chrIV 407648 408366 MC_gene_1199_tx_1 1 + 407648 408366 . 1 719 0 -chrIV 407806 408197 MC_gene_1199_tx_2 1 + 407806 408197 . 1 392 0 -chrIV 408107 409214 HC_gene_1809_tx_1 2 - 408107 409214 . 1 1108 0 -chrIV 408243 409869 HC_gene_1810_tx_1 2 - 408243 409869 . 1 1627 0 -chrIV 409455 410249 MC_gene_1200_tx_1 1 + 409455 410249 . 1 795 0 -chrIV 410393 410636 MC_gene_1201_tx_1 1 + 410393 410636 . 1 244 0 -chrIV 410512 411030 MC_gene_1811_tx_1 1 - 410512 411030 . 1 519 0 -chrIV 410677 411590 MC_gene_1812_tx_1 1 - 410677 411590 . 1 914 0 -chrIV 410684 411145 MC_gene_1812_tx_2 1 - 410684 411145 . 1 462 0 -chrIV 411686 413232 HC_gene_1202_tx_1 2 + 411686 413232 . 1 1547 0 -chrIV 411759 413232 HC_gene_1202_tx_2 137 + 411759 413232 . 1 1474 0 -chrIV 411759 413232 HC_gene_1202_tx_3 1 + 411759 413232 . 2 292,976 0,498 -chrIV 411759 413232 HC_gene_1202_tx_4 1 + 411759 413232 . 2 1266,77 0,1397 -chrIV 411960 413232 HC_gene_1202_tx_5 20 + 411960 413232 . 1 1273 0 -chrIV 412101 413232 HC_gene_1202_tx_6 20 + 412101 413232 . 1 1132 0 -chrIV 412174 413232 HC_gene_1202_tx_7 5 + 412174 413232 . 1 1059 0 -chrIV 412174 413232 HC_gene_1202_tx_8 1 + 412174 413232 . 2 855,111 0,948 -chrIV 412605 413232 HC_gene_1202_tx_9 42 + 412605 413232 . 1 628 0 -chrIV 412818 413232 HC_gene_1202_tx_10 34 + 412818 413232 . 1 415 0 -chrIV 413214 413577 MC_gene_1813_tx_1 1 - 413214 413577 . 1 364 0 -chrIV 413815 414790 MC_gene_1814_tx_1 1 - 413815 414790 . 1 976 0 -chrIV 413928 414959 HC_gene_1203_tx_1 28 + 413928 414959 . 1 1032 0 -chrIV 413928 415148 HC_gene_1203_tx_2 1 + 413928 415148 . 1 1221 0 -chrIV 414012 414959 HC_gene_1203_tx_3 2 + 414012 414959 . 1 948 0 -chrIV 414365 414959 HC_gene_1203_tx_4 2 + 414365 414959 . 1 595 0 -chrIV 414424 414959 HC_gene_1203_tx_5 4 + 414424 414959 . 1 536 0 -chrIV 414989 416500 HC_gene_1815_tx_1 16 - 414989 416500 . 1 1512 0 -chrIV 414989 416500 HC_gene_1815_tx_2 1 - 414989 416500 . 2 1104,215 0,1297 -chrIV 414989 416804 HC_gene_1815_tx_3 174 - 414989 416804 . 1 1816 0 -chrIV 414989 416804 HC_gene_1815_tx_4 1 - 414989 416804 . 2 1494,203 0,1613 -chrIV 414989 416804 HC_gene_1815_tx_5 1 - 414989 416804 . 2 374,1276 0,540 -chrIV 414989 416804 HC_gene_1815_tx_6 1 - 414989 416804 . 2 515,1255 0,561 -chrIV 414989 416804 HC_gene_1815_tx_7 1 - 414989 416804 . 2 707,1022 0,794 -chrIV 414989 416804 HC_gene_1815_tx_8 1 - 414989 416804 . 2 708,1017 0,799 -chrIV 414989 416804 HC_gene_1815_tx_9 1 - 414989 416804 . 2 57,1698 0,118 -chrIV 414989 416804 HC_gene_1815_tx_10 1 - 414989 416804 . 2 880,889 0,927 -chrIV 416715 416804 HC_gene_1815_tx_11 9 - 416715 416804 . 1 90 0 -chrIV 417270 418912 MC_gene_1204_tx_1 1 + 417270 418912 . 1 1643 0 -chrIV 417446 420280 MC_gene_1205_tx_1 1 + 417446 420280 . 1 2835 0 -chrIV 417465 417798 HC_gene_1816_tx_1 4 - 417465 417798 . 1 334 0 -chrIV 417465 417876 HC_gene_1816_tx_2 5 - 417465 417876 . 1 412 0 -chrIV 417465 418050 HC_gene_1816_tx_3 3 - 417465 418050 . 1 586 0 -chrIV 417465 418462 HC_gene_1816_tx_5 2 - 417465 418462 . 1 998 0 -chrIV 417465 418795 HC_gene_1816_tx_8 1 - 417465 418795 . 1 1331 0 -chrIV 417465 419138 HC_gene_1816_tx_10 4 - 417465 419138 . 1 1674 0 -chrIV 417465 419606 HC_gene_1816_tx_11 1 - 417465 419606 . 1 2142 0 -chrIV 417465 421728 HC_gene_1816_tx_16 1 - 417465 421728 . 2 1360,2832 0,1432 -chrIV 417465 421728 HC_gene_1816_tx_17 1 - 417465 421728 . 1 4264 0 -chrIV 417572 417798 HC_gene_1816_tx_19 5 - 417572 417798 . 1 227 0 -chrIV 417572 417876 HC_gene_1816_tx_20 10 - 417572 417876 . 1 305 0 -chrIV 417572 418050 HC_gene_1816_tx_4 8 - 417572 418050 . 1 479 0 -chrIV 417572 418462 HC_gene_1816_tx_6 2 - 417572 418462 . 1 891 0 -chrIV 417572 418462 HC_gene_1816_tx_7 1 - 417572 418462 . 2 347,462 0,429 -chrIV 417572 418795 HC_gene_1816_tx_9 2 - 417572 418795 . 1 1224 0 -chrIV 417572 419210 HC_gene_1816_tx_12 1 - 417572 419210 . 1 1639 0 -chrIV 417572 419507 HC_gene_1816_tx_13 2 - 417572 419507 . 1 1936 0 -chrIV 417572 419606 HC_gene_1816_tx_14 1 - 417572 419606 . 1 2035 0 -chrIV 417572 419666 HC_gene_1816_tx_15 2 - 417572 419666 . 1 2095 0 -chrIV 417572 420383 HC_gene_1816_tx_21 2 - 417572 420383 . 1 2812 0 -chrIV 417572 421625 HC_gene_1816_tx_18 1 - 417572 421625 . 4 1202,289,495,1261 0,1549,2100,2793 -chrIV 421939 422503 MC_gene_1206_tx_1 1 + 421939 422503 . 1 565 0 -chrIV 422578 423571 HC_gene_1817_tx_1 3 - 422578 423571 . 1 994 0 -chrIV 422740 423197 HC_gene_1817_tx_5 5 - 422740 423197 . 1 458 0 -chrIV 422740 423456 HC_gene_1817_tx_2 4 - 422740 423456 . 1 717 0 -chrIV 422740 423571 HC_gene_1817_tx_3 37 - 422740 423571 . 1 832 0 -chrIV 422740 423571 HC_gene_1817_tx_4 1 - 422740 423571 . 2 118,317 0,515 -chrIV 422740 423921 HC_gene_1817_tx_6 1 - 422740 423921 . 1 1182 0 -chrIV 423711 423987 HC_gene_1207_tx_1 1 + 423711 423987 . 1 277 0 -chrIV 424201 425862 HC_gene_1208_tx_1 8 + 424201 425862 . 1 1662 0 -chrIV 424201 425862 HC_gene_1208_tx_2 1 + 424201 425862 . 2 819,792 0,870 -chrIV 424201 425862 HC_gene_1208_tx_3 1 + 424201 425862 . 2 314,1256 0,406 -chrIV 425745 426252 HC_gene_1818_tx_1 34 - 425745 426252 . 1 508 0 -chrIV 425745 426426 HC_gene_1818_tx_2 40 - 425745 426426 . 1 682 0 -chrIV 425745 426426 HC_gene_1818_tx_3 1 - 425745 426426 . 2 99,513 0,169 -chrIV 425745 426681 HC_gene_1818_tx_4 23 - 425745 426681 . 1 937 0 -chrIV 425745 426903 HC_gene_1818_tx_5 1 - 425745 426903 . 2 700,237 0,922 -chrIV 425745 426988 HC_gene_1818_tx_6 216 - 425745 426988 . 1 1244 0 -chrIV 425745 426988 HC_gene_1818_tx_7 1 - 425745 426988 . 2 870,151 0,1093 -chrIV 425745 426988 HC_gene_1818_tx_8 1 - 425745 426988 . 2 57,438 0,806 -chrIV 425745 426988 HC_gene_1818_tx_9 1 - 425745 426988 . 2 514,68 0,1176 -chrIV 425995 427021 MC_gene_1209_tx_1 1 + 425995 427021 . 1 1027 0 -chrIV 427221 428451 HC_gene_1210_tx_1 1 + 427221 428451 . 1 1231 0 -chrIV 427221 428563 HC_gene_1210_tx_2 587 + 427221 428563 . 1 1343 0 -chrIV 427221 428563 HC_gene_1210_tx_3 1 + 427221 428563 . 2 786,486 0,857 -chrIV 427221 428563 HC_gene_1210_tx_4 1 + 427221 428563 . 2 140,1027 0,316 -chrIV 427221 428563 HC_gene_1210_tx_5 1 + 427221 428563 . 2 1171,88 0,1255 -chrIV 427221 428563 HC_gene_1210_tx_6 1 + 427221 428563 . 2 163,909 0,434 -chrIV 427221 428563 HC_gene_1210_tx_7 1 + 427221 428563 . 2 309,817 0,526 -chrIV 427221 428563 HC_gene_1210_tx_8 1 + 427221 428563 . 2 303,818 0,525 -chrIV 427221 428563 HC_gene_1210_tx_9 1 + 427221 428563 . 2 140,1081 0,262 -chrIV 427221 428563 HC_gene_1210_tx_10 1 + 427221 428563 . 2 612,680 0,663 -chrIV 427221 428563 HC_gene_1210_tx_11 2 + 427221 428563 . 2 140,1153 0,190 -chrIV 427221 428563 HC_gene_1210_tx_12 1 + 427221 428563 . 2 204,1045 0,298 -chrIV 427221 428563 HC_gene_1210_tx_13 1 + 427221 428563 . 2 483,757 0,586 -chrIV 427221 428563 HC_gene_1210_tx_14 1 + 427221 428563 . 2 219,1045 0,298 -chrIV 427221 428563 HC_gene_1210_tx_15 1 + 427221 428563 . 2 113,757 0,586 -chrIV 427221 428563 HC_gene_1210_tx_16 1 + 427221 428563 . 2 1159,76 0,1267 -chrIV 427221 428563 HC_gene_1210_tx_17 1 + 427221 428563 . 2 327,925 0,418 -chrIV 427221 428563 HC_gene_1210_tx_18 1 + 427221 428563 . 2 246,991 0,352 -chrIV 427221 428563 HC_gene_1210_tx_19 1 + 427221 428563 . 2 704,462 0,881 -chrIV 427221 428563 HC_gene_1210_tx_20 1 + 427221 428563 . 2 833,296 0,1047 -chrIV 427221 428563 HC_gene_1210_tx_21 1 + 427221 428563 . 2 285,982 0,361 -chrIV 427221 428563 HC_gene_1210_tx_22 1 + 427221 428563 . 2 222,1081 0,262 -chrIV 427221 428563 HC_gene_1210_tx_23 1 + 427221 428563 . 2 102,877 0,466 -chrIV 427221 428563 HC_gene_1210_tx_24 1 + 427221 428563 . 2 343,559 0,784 -chrIV 427221 428563 HC_gene_1210_tx_25 1 + 427221 428563 . 2 813,454 0,889 -chrIV 427221 428563 HC_gene_1210_tx_26 1 + 427221 428563 . 2 554,608 0,735 -chrIV 427221 428563 HC_gene_1210_tx_27 1 + 427221 428563 . 2 378,757 0,586 -chrIV 427221 428563 HC_gene_1210_tx_28 1 + 427221 428563 . 2 159,1135 0,208 -chrIV 427221 428563 HC_gene_1210_tx_29 1 + 427221 428563 . 2 201,925 0,418 -chrIV 427221 428563 HC_gene_1210_tx_30 1 + 427221 428563 . 2 279,991 0,352 -chrIV 427221 428563 HC_gene_1210_tx_31 1 + 427221 428563 . 2 161,877 0,466 -chrIV 427221 428563 HC_gene_1210_tx_32 1 + 427221 428563 . 2 246,1027 0,316 -chrIV 427391 428563 HC_gene_1210_tx_33 33 + 427391 428563 . 1 1173 0 -chrIV 427391 428563 HC_gene_1210_tx_34 1 + 427391 428563 . 2 220,881 0,292 -chrIV 427558 428563 HC_gene_1210_tx_35 1 + 427558 428563 . 2 20,881 0,125 -chrIV 427577 428563 HC_gene_1210_tx_36 281 + 427577 428563 . 1 987 0 -chrIV 427577 428563 HC_gene_1210_tx_37 1 + 427577 428563 . 2 554,364 0,623 -chrIV 427577 428563 HC_gene_1210_tx_38 1 + 427577 428563 . 2 45,893 0,94 -chrIV 427577 428563 HC_gene_1210_tx_39 1 + 427577 428563 . 2 89,564 0,423 -chrIV 427577 428563 HC_gene_1210_tx_40 1 + 427577 428563 . 2 319,590 0,397 -chrIV 427577 428563 HC_gene_1210_tx_41 1 + 427577 428563 . 2 479,320 0,667 -chrIV 427835 428563 HC_gene_1210_tx_42 181 + 427835 428563 . 1 729 0 -chrIV 427835 428563 HC_gene_1210_tx_43 1 + 427835 428563 . 2 469,124 0,605 -chrIV 428160 428563 HC_gene_1210_tx_44 210 + 428160 428563 . 1 404 0 -chrIV 428476 428733 HC_gene_1819_tx_1 4 - 428476 428733 . 1 258 0 -chrIV 428931 431042 HC_gene_1211_tx_1 14 + 428931 431042 . 1 2112 0 -chrIV 428931 431163 HC_gene_1211_tx_2 1 + 428931 431163 . 1 2233 0 -chrIV 429368 431042 HC_gene_1211_tx_3 3 + 429368 431042 . 1 1675 0 -chrIV 429589 431042 HC_gene_1211_tx_4 3 + 429589 431042 . 1 1454 0 -chrIV 430820 431345 HC_gene_1820_tx_1 2 - 430820 431345 . 1 526 0 -chrIV 430820 431535 HC_gene_1820_tx_3 8 - 430820 431535 . 2 567,63 0,653 -chrIV 430820 431535 HC_gene_1820_tx_4 6 - 430820 431535 . 1 716 0 -chrIV 430921 431345 HC_gene_1820_tx_2 31 - 430921 431345 . 1 425 0 -chrIV 430921 431535 HC_gene_1820_tx_5 103 - 430921 431535 . 2 466,63 0,552 -chrIV 430921 431535 HC_gene_1820_tx_6 40 - 430921 431535 . 1 615 0 -chrIV 430921 431535 HC_gene_1820_tx_7 2 - 430921 431535 . 2 452,63 0,552 -chrIV 430921 431535 HC_gene_1820_tx_8 2 - 430921 431535 . 2 419,63 0,552 -chrIV 430921 432014 HC_gene_1821_tx_1 11 - 430921 432014 . 1 1094 0 -chrIV 430921 432014 HC_gene_1821_tx_2 5 - 430921 432014 . 2 466,542 0,552 -chrIV 431031 431535 HC_gene_1820_tx_9 2 - 431031 431535 . 2 356,63 0,442 -chrIV 432301 433309 HC_gene_1212_tx_1 50 + 432301 433309 . 1 1009 0 -chrIV 432301 433309 HC_gene_1212_tx_2 1 + 432301 433309 . 2 639,275 0,734 -chrIV 432301 433388 HC_gene_1212_tx_3 3 + 432301 433388 . 1 1088 0 -chrIV 432501 433097 HC_gene_1212_tx_7 1 + 432501 433097 . 1 597 0 -chrIV 432501 433309 HC_gene_1212_tx_4 8 + 432501 433309 . 1 809 0 -chrIV 432647 433091 HC_gene_1212_tx_8 1 + 432647 433091 . 1 445 0 -chrIV 432647 433309 HC_gene_1212_tx_5 14 + 432647 433309 . 1 663 0 -chrIV 432647 433388 HC_gene_1212_tx_6 2 + 432647 433388 . 1 742 0 -chrIV 432995 433323 MC_gene_1822_tx_1 1 - 432995 433323 . 1 329 0 -chrIV 433441 434123 MC_gene_1823_tx_1 1 - 433441 434123 . 1 683 0 -chrIV 433475 434109 HC_gene_1213_tx_1 72 + 433475 434109 . 1 635 0 -chrIV 433612 434109 HC_gene_1213_tx_2 1 + 433612 434109 . 1 498 0 -chrIV 433697 434109 HC_gene_1213_tx_3 5 + 433697 434109 . 1 413 0 -chrIV 433804 434109 HC_gene_1213_tx_4 12 + 433804 434109 . 1 306 0 -chrIV 434472 434885 LC_gene_1824_tx_1 1 - 434472 434885 . 1 414 0 -chrIV 438008 439439 HC_gene_1214_tx_1 162 + 438008 439439 . 1 1432 0 -chrIV 438008 439439 HC_gene_1214_tx_2 1 + 438008 439439 . 2 659,599 0,833 -chrIV 438008 439439 HC_gene_1214_tx_3 1 + 438008 439439 . 2 780,599 0,833 -chrIV 438008 439439 HC_gene_1214_tx_4 1 + 438008 439439 . 2 803,563 0,869 -chrIV 438157 439439 HC_gene_1214_tx_5 14 + 438157 439439 . 1 1283 0 -chrIV 438319 439439 HC_gene_1214_tx_6 24 + 438319 439439 . 1 1121 0 -chrIV 438319 439439 HC_gene_1214_tx_7 1 + 438319 439439 . 2 166,798 0,323 -chrIV 438494 439439 HC_gene_1214_tx_8 1 + 438494 439439 . 2 38,696 0,250 -chrIV 438519 439439 HC_gene_1214_tx_9 32 + 438519 439439 . 1 921 0 -chrIV 438519 439439 HC_gene_1214_tx_10 1 + 438519 439439 . 2 42,582 0,339 -chrIV 438603 439439 HC_gene_1214_tx_11 15 + 438603 439439 . 1 837 0 -chrIV 438699 439155 HC_gene_1214_tx_15 1 + 438699 439155 . 1 457 0 -chrIV 438699 439439 HC_gene_1214_tx_12 40 + 438699 439439 . 1 741 0 -chrIV 438820 439439 HC_gene_1214_tx_13 54 + 438820 439439 . 1 620 0 -chrIV 438820 439439 HC_gene_1214_tx_14 1 + 438820 439439 . 2 518,51 0,569 -chrIV 438989 439439 HC_gene_1214_tx_16 55 + 438989 439439 . 1 451 0 -chrIV 439074 439439 HC_gene_1214_tx_17 22 + 439074 439439 . 1 366 0 -chrIV 439167 439439 HC_gene_1214_tx_18 28 + 439167 439439 . 1 273 0 -chrIV 439329 439859 LC_gene_1825_tx_1 1 - 439329 439859 . 1 531 0 -chrIV 439587 440871 HC_gene_1215_tx_1 37 + 439587 440871 . 1 1285 0 -chrIV 439587 440990 HC_gene_1215_tx_2 6 + 439587 440990 . 1 1404 0 -chrIV 439587 441509 HC_gene_1215_tx_3 1 + 439587 441509 . 1 1923 0 -chrIV 440796 441436 HC_gene_1826_tx_1 25 - 440796 441436 . 1 641 0 -chrIV 440796 441531 HC_gene_1826_tx_2 23 - 440796 441531 . 1 736 0 -chrIV 440796 441952 HC_gene_1826_tx_5 4 - 440796 441952 . 1 1157 0 -chrIV 440796 442350 HC_gene_1826_tx_7 47 - 440796 442350 . 1 1555 0 -chrIV 440796 442350 HC_gene_1826_tx_8 1 - 440796 442350 . 2 1015,269 0,1286 -chrIV 440796 442350 HC_gene_1826_tx_9 1 - 440796 442350 . 2 704,781 0,774 -chrIV 440869 441436 HC_gene_1826_tx_3 4 - 440869 441436 . 1 568 0 -chrIV 440869 441531 HC_gene_1826_tx_4 3 - 440869 441531 . 1 663 0 -chrIV 440869 441952 HC_gene_1826_tx_6 1 - 440869 441952 . 1 1084 0 -chrIV 440869 442350 HC_gene_1826_tx_10 9 - 440869 442350 . 1 1482 0 -chrIV 441438 442274 HC_gene_1826_tx_11 1 - 441438 442274 . 1 837 0 -chrIV 441438 442304 HC_gene_1826_tx_12 1 - 441438 442304 . 1 867 0 -chrIV 441438 442323 HC_gene_1826_tx_13 1 - 441438 442323 . 1 886 0 -chrIV 441438 442339 HC_gene_1826_tx_14 1 - 441438 442339 . 1 902 0 -chrIV 441438 442350 HC_gene_1826_tx_15 3 - 441438 442350 . 1 913 0 -chrIV 442582 442821 LC_gene_1216_tx_1 1 + 442582 442821 . 1 240 0 -chrIV 442985 443756 HC_gene_1217_tx_1 559 + 442985 443756 . 1 772 0 -chrIV 443205 443756 HC_gene_1217_tx_2 46 + 443205 443756 . 1 552 0 -chrIV 443280 443756 HC_gene_1217_tx_3 60 + 443280 443756 . 1 477 0 -chrIV 443647 444191 HC_gene_1827_tx_1 6 - 443647 444191 . 1 545 0 -chrIV 443723 444191 HC_gene_1827_tx_2 2 - 443723 444191 . 1 469 0 -chrIV 444558 446514 HC_gene_1218_tx_1 20 + 444558 446514 . 1 1957 0 -chrIV 444558 446514 HC_gene_1218_tx_2 1 + 444558 446514 . 2 591,993 0,964 -chrIV 444558 446514 HC_gene_1218_tx_3 1 + 444558 446514 . 2 980,871 0,1086 -chrIV 444558 446514 HC_gene_1218_tx_4 1 + 444558 446514 . 2 1034,822 0,1135 -chrIV 444558 446514 HC_gene_1218_tx_5 1 + 444558 446514 . 2 153,1627 0,330 -chrIV 444675 446514 HC_gene_1218_tx_6 2 + 444675 446514 . 1 1840 0 -chrIV 444866 446514 HC_gene_1218_tx_7 2 + 444866 446514 . 1 1649 0 -chrIV 445512 446114 MC_gene_1828_tx_1 1 - 445512 446114 . 1 603 0 -chrIV 446213 446514 HC_gene_1218_tx_8 13 + 446213 446514 . 1 302 0 -chrIV 446625 447238 HC_gene_1829_tx_1 10 - 446625 447238 . 1 614 0 -chrIV 446625 447449 HC_gene_1829_tx_2 7 - 446625 447449 . 1 825 0 -chrIV 446625 447619 HC_gene_1829_tx_3 1 - 446625 447619 . 2 207,727 0,268 -chrIV 446625 447619 HC_gene_1829_tx_4 59 - 446625 447619 . 1 995 0 -chrIV 446625 447619 HC_gene_1829_tx_5 1 - 446625 447619 . 2 493,410 0,585 -chrIV 446625 447619 HC_gene_1829_tx_6 1 - 446625 447619 . 2 293,606 0,389 -chrIV 446831 447238 HC_gene_1829_tx_7 1 - 446831 447238 . 1 408 0 -chrIV 446831 447619 HC_gene_1829_tx_9 3 - 446831 447619 . 1 789 0 -chrIV 446832 447238 HC_gene_1829_tx_8 1 - 446832 447238 . 1 407 0 -chrIV 446832 447619 HC_gene_1829_tx_10 1 - 446832 447619 . 1 788 0 -chrIV 447925 449495 HC_gene_1219_tx_1 1 + 447925 449495 . 1 1571 0 -chrIV 448631 449084 LC_gene_1830_tx_1 1 - 448631 449084 . 1 454 0 -chrIV 448632 449495 HC_gene_1219_tx_2 1 + 448632 449495 . 1 864 0 -chrIV 449309 449565 MC_gene_1831_tx_1 1 - 449309 449565 . 1 257 0 -chrIV 450008 450239 MC_gene_1220_tx_1 1 + 450008 450239 . 1 232 0 -chrIV 450104 451048 HC_gene_1832_tx_1 14 - 450104 451048 . 1 945 0 -chrIV 450104 451048 HC_gene_1832_tx_2 1 - 450104 451048 . 2 508,270 0,675 -chrIV 450104 451818 HC_gene_1832_tx_3 5 - 450104 451818 . 1 1715 0 -chrIV 450104 452034 HC_gene_1832_tx_4 4 - 450104 452034 . 1 1931 0 -chrIV 450104 452683 HC_gene_1832_tx_5 28 - 450104 452683 . 1 2580 0 -chrIV 450104 452683 HC_gene_1832_tx_6 1 - 450104 452683 . 2 507,2015 0,565 -chrIV 450104 452683 HC_gene_1832_tx_7 1 - 450104 452683 . 2 1352,621 0,1959 -chrIV 450912 451462 LC_gene_1221_tx_1 1 + 450912 451462 . 1 551 0 -chrIV 452829 453836 HC_gene_1222_tx_1 17 + 452829 453836 . 1 1008 0 -chrIV 453016 453836 HC_gene_1222_tx_2 1153 + 453016 453836 . 1 821 0 -chrIV 453016 453966 HC_gene_1222_tx_3 4 + 453016 453966 . 1 951 0 -chrIV 453363 453836 HC_gene_1222_tx_4 106 + 453363 453836 . 1 474 0 -chrIV 453429 453836 HC_gene_1222_tx_5 59 + 453429 453836 . 1 408 0 -chrIV 453976 454728 LC_gene_1833_tx_1 1 - 453976 454728 . 1 753 0 -chrIV 454084 455062 HC_gene_1223_tx_1 74 + 454084 455062 . 1 979 0 -chrIV 454084 455238 HC_gene_1223_tx_2 1 + 454084 455238 . 1 1155 0 -chrIV 454344 455062 HC_gene_1223_tx_3 15 + 454344 455062 . 1 719 0 -chrIV 454466 455062 HC_gene_1223_tx_4 9 + 454466 455062 . 1 597 0 -chrIV 454737 455062 HC_gene_1223_tx_5 23 + 454737 455062 . 1 326 0 -chrIV 454737 455238 HC_gene_1223_tx_6 1 + 454737 455238 . 1 502 0 -chrIV 454872 455062 HC_gene_1223_tx_7 5 + 454872 455062 . 1 191 0 -chrIV 454995 455645 MC_gene_1834_tx_1 1 - 454995 455645 . 1 651 0 -chrIV 455214 456748 HC_gene_1224_tx_1 35 + 455214 456748 . 1 1535 0 -chrIV 455214 456748 HC_gene_1224_tx_2 1 + 455214 456748 . 2 798,579 0,956 -chrIV 456344 456748 HC_gene_1224_tx_3 7 + 456344 456748 . 1 405 0 -chrIV 456623 457760 HC_gene_1835_tx_1 7 - 456623 457760 . 1 1138 0 -chrIV 456623 458221 HC_gene_1835_tx_2 16 - 456623 458221 . 2 1395,124 0,1475 -chrIV 456623 458221 HC_gene_1835_tx_3 5 - 456623 458221 . 1 1599 0 -chrIV 456623 458221 HC_gene_1835_tx_4 1 - 456623 458221 . 2 1093,124 0,1475 -chrIV 456623 458221 HC_gene_1835_tx_5 1 - 456623 458221 . 2 853,124 0,1475 -chrIV 456623 458221 HC_gene_1835_tx_6 1 - 456623 458221 . 2 409,1145 0,454 -chrIV 457359 458047 MC_gene_1225_tx_1 1 + 457359 458047 . 1 689 0 -chrIV 458453 459054 HC_gene_1836_tx_1 13 - 458453 459054 . 1 602 0 -chrIV 458453 460522 HC_gene_1836_tx_2 6 - 458453 460522 . 1 2070 0 -chrIV 458453 460778 HC_gene_1836_tx_3 6 - 458453 460778 . 1 2326 0 -chrIV 458453 460973 HC_gene_1836_tx_4 3 - 458453 460973 . 1 2521 0 -chrIV 458453 461081 HC_gene_1836_tx_5 2 - 458453 461081 . 1 2629 0 -chrIV 458453 461344 HC_gene_1836_tx_6 24 - 458453 461344 . 1 2892 0 -chrIV 461280 462408 HC_gene_1837_tx_1 1 - 461280 462408 . 1 1129 0 -chrIV 461549 462408 HC_gene_1837_tx_2 7 - 461549 462408 . 1 860 0 -chrIV 461645 462579 HC_gene_1226_tx_1 25 + 461645 462579 . 1 935 0 -chrIV 461645 462657 HC_gene_1226_tx_2 12 + 461645 462657 . 1 1013 0 -chrIV 461655 462408 HC_gene_1837_tx_3 1 - 461655 462408 . 1 754 0 -chrIV 461807 462579 HC_gene_1226_tx_3 36 + 461807 462579 . 1 773 0 -chrIV 461807 462657 HC_gene_1226_tx_4 23 + 461807 462657 . 1 851 0 -chrIV 461807 462874 HC_gene_1226_tx_5 2 + 461807 462874 . 1 1068 0 -chrIV 462094 462579 HC_gene_1226_tx_6 6 + 462094 462579 . 1 486 0 -chrIV 462094 462657 HC_gene_1226_tx_7 5 + 462094 462657 . 1 564 0 -chrIV 462289 462579 HC_gene_1226_tx_8 8 + 462289 462579 . 1 291 0 -chrIV 462289 462657 HC_gene_1226_tx_9 6 + 462289 462657 . 1 369 0 -chrIV 462624 464972 HC_gene_1838_tx_1 1 - 462624 464972 . 1 2349 0 -chrIV 462794 463278 HC_gene_1838_tx_3 3 - 462794 463278 . 1 485 0 -chrIV 462794 464972 HC_gene_1838_tx_2 2 - 462794 464972 . 1 2179 0 -chrIV 463913 465631 MC_gene_1227_tx_1 1 + 463913 465631 . 1 1719 0 -chrIV 465597 470440 HC_gene_1228_tx_1 1 + 465597 470440 . 1 4844 0 -chrIV 465597 470445 HC_gene_1228_tx_2 1 + 465597 470445 . 1 4849 0 -chrIV 465597 470449 HC_gene_1228_tx_3 1 + 465597 470449 . 1 4853 0 -chrIV 465597 470460 HC_gene_1228_tx_4 1 + 465597 470460 . 1 4864 0 -chrIV 465597 470469 HC_gene_1228_tx_5 1 + 465597 470469 . 1 4873 0 -chrIV 465597 470471 HC_gene_1228_tx_6 1 + 465597 470471 . 1 4875 0 -chrIV 465597 470606 HC_gene_1228_tx_7 27 + 465597 470606 . 1 5010 0 -chrIV 465597 470606 HC_gene_1228_tx_8 1 + 465597 470606 . 2 3815,1068 0,3942 -chrIV 465597 470606 HC_gene_1228_tx_9 1 + 465597 470606 . 2 1952,2663 0,2347 -chrIV 465597 470606 HC_gene_1228_tx_10 1 + 465597 470606 . 2 3340,1594 0,3416 -chrIV 465597 470606 HC_gene_1228_tx_11 1 + 465597 470606 . 2 4501,411 0,4599 -chrIV 465906 470606 HC_gene_1228_tx_12 6 + 465906 470606 . 1 4701 0 -chrIV 466013 470445 HC_gene_1228_tx_13 1 + 466013 470445 . 1 4433 0 -chrIV 466013 470494 HC_gene_1228_tx_14 1 + 466013 470494 . 1 4482 0 -chrIV 466013 470606 HC_gene_1228_tx_15 2 + 466013 470606 . 1 4594 0 -chrIV 466882 470476 HC_gene_1228_tx_16 1 + 466882 470476 . 1 3595 0 -chrIV 466882 470606 HC_gene_1228_tx_17 7 + 466882 470606 . 1 3725 0 -chrIV 468517 470451 HC_gene_1228_tx_18 1 + 468517 470451 . 2 126,1542 0,393 -chrIV 468517 470460 HC_gene_1228_tx_19 2 + 468517 470460 . 1 1944 0 -chrIV 468517 470606 HC_gene_1228_tx_20 1 + 468517 470606 . 2 796,743 0,1347 -chrIV 468517 470606 HC_gene_1228_tx_21 17 + 468517 470606 . 1 2090 0 -chrIV 468517 470606 HC_gene_1228_tx_22 1 + 468517 470606 . 2 1371,539 0,1551 -chrIV 469713 470445 HC_gene_1228_tx_23 1 + 469713 470445 . 1 733 0 -chrIV 469713 470453 HC_gene_1228_tx_24 1 + 469713 470453 . 1 741 0 -chrIV 469713 470457 HC_gene_1228_tx_25 1 + 469713 470457 . 1 745 0 -chrIV 469713 470458 HC_gene_1228_tx_26 1 + 469713 470458 . 1 746 0 -chrIV 469713 470472 HC_gene_1228_tx_27 1 + 469713 470472 . 1 760 0 -chrIV 469713 470482 HC_gene_1228_tx_28 1 + 469713 470482 . 1 770 0 -chrIV 469713 470491 HC_gene_1228_tx_29 1 + 469713 470491 . 1 779 0 -chrIV 469713 470606 HC_gene_1228_tx_30 49 + 469713 470606 . 1 894 0 -chrIV 469713 470606 HC_gene_1228_tx_31 2 + 469713 470606 . 2 761,63 0,831 -chrIV 469713 470606 HC_gene_1228_tx_32 1 + 469713 470606 . 2 708,69 0,825 -chrIV 469872 470688 LC_gene_1839_tx_1 1 - 469872 470688 . 1 817 0 -chrIV 470791 471530 HC_gene_1840_tx_1 4 - 470791 471530 . 1 740 0 -chrIV 470944 471867 HC_gene_1229_tx_1 2 + 470944 471867 . 1 924 0 -chrIV 471003 471867 HC_gene_1229_tx_2 2 + 471003 471867 . 1 865 0 -chrIV 471820 473021 HC_gene_1230_tx_1 1144 + 471820 473021 . 1 1202 0 -chrIV 471820 473223 HC_gene_1230_tx_2 6 + 471820 473223 . 1 1404 0 -chrIV 472208 473021 HC_gene_1230_tx_3 162 + 472208 473021 . 1 814 0 -chrIV 472639 473021 HC_gene_1230_tx_4 307 + 472639 473021 . 1 383 0 -chrIV 472639 473223 HC_gene_1230_tx_5 3 + 472639 473223 . 1 585 0 -chrIV 473140 473873 HC_gene_1231_tx_1 46 + 473140 473873 . 1 734 0 -chrIV 473765 474902 LC_gene_1841_tx_1 1 - 473765 474902 . 1 1138 0 -chrIV 473994 475117 HC_gene_1232_tx_1 1 + 473994 475117 . 1 1124 0 -chrIV 473994 476238 HC_gene_1232_tx_2 1 + 473994 476238 . 1 2245 0 -chrIV 473994 476394 HC_gene_1232_tx_3 3 + 473994 476394 . 1 2401 0 -chrIV 474182 476394 HC_gene_1232_tx_4 1 + 474182 476394 . 1 2213 0 -chrIV 476168 476828 LC_gene_1842_tx_1 1 - 476168 476828 . 1 661 0 -chrIV 477776 478428 HC_gene_1233_tx_1 4 + 477776 478428 . 1 653 0 -chrIV 478365 478775 HC_gene_1843_tx_1 217 - 478365 478775 . 1 411 0 -chrIV 478944 481737 HC_gene_1844_tx_1 1 - 478944 481737 . 1 2794 0 -chrIV 478944 481737 HC_gene_1844_tx_2 1 - 478944 481737 . 2 1738,896 0,1898 -chrIV 478944 482030 HC_gene_1844_tx_3 2 - 478944 482030 . 1 3087 0 -chrIV 478944 482030 HC_gene_1844_tx_4 1 - 478944 482030 . 2 1129,1888 0,1199 -chrIV 478944 482268 HC_gene_1844_tx_5 8 - 478944 482268 . 1 3325 0 -chrIV 478944 482268 HC_gene_1844_tx_6 1 - 478944 482268 . 2 46,3226 0,99 -chrIV 480109 481737 HC_gene_1844_tx_7 1 - 480109 481737 . 1 1629 0 -chrIV 482505 483859 HC_gene_1845_tx_1 1 - 482505 483859 . 1 1355 0 -chrIV 482619 483377 MC_gene_1234_tx_1 1 + 482619 483377 . 1 759 0 -chrIV 483664 484058 MC_gene_1235_tx_1 1 + 483664 484058 . 1 395 0 -chrIV 483985 484506 HC_gene_1846_tx_1 14 - 483985 484506 . 1 522 0 -chrIV 483985 484729 HC_gene_1846_tx_2 5 - 483985 484729 . 1 745 0 -chrIV 483985 485040 HC_gene_1846_tx_3 16 - 483985 485040 . 1 1056 0 -chrIV 483985 485278 HC_gene_1846_tx_4 6 - 483985 485278 . 1 1294 0 -chrIV 483985 485383 HC_gene_1846_tx_5 59 - 483985 485383 . 1 1399 0 -chrIV 485256 486416 LC_gene_1236_tx_1 1 + 485256 486416 . 1 1161 0 -chrIV 485328 485812 HC_gene_1847_tx_1 9 - 485328 485812 . 1 485 0 -chrIV 485328 486509 HC_gene_1847_tx_3 21 - 485328 486509 . 1 1182 0 -chrIV 485328 486515 HC_gene_1847_tx_4 1 - 485328 486515 . 1 1188 0 -chrIV 485328 486527 HC_gene_1847_tx_5 1 - 485328 486527 . 1 1200 0 -chrIV 485402 485812 HC_gene_1847_tx_2 1 - 485402 485812 . 1 411 0 -chrIV 485402 486509 HC_gene_1847_tx_6 2 - 485402 486509 . 1 1108 0 -chrIV 486724 488057 HC_gene_1237_tx_1 28 + 486724 488057 . 1 1334 0 -chrIV 487966 488671 HC_gene_1848_tx_1 31 - 487966 488671 . 1 706 0 -chrIV 487966 489210 HC_gene_1848_tx_2 1 - 487966 489210 . 1 1245 0 -chrIV 489400 490934 MC_gene_1849_tx_1 1 - 489400 490934 . 1 1535 0 -chrIV 489484 491044 HC_gene_1238_tx_1 1 + 489484 491044 . 2 913,571 0,990 -chrIV 489485 491044 HC_gene_1238_tx_2 407 + 489485 491044 . 1 1560 0 -chrIV 489485 491044 HC_gene_1238_tx_3 1 + 489485 491044 . 2 37,1471 0,89 -chrIV 489485 491044 HC_gene_1238_tx_4 1 + 489485 491044 . 2 1010,314 0,1246 -chrIV 489485 491044 HC_gene_1238_tx_5 1 + 489485 491044 . 2 873,625 0,935 -chrIV 489485 491044 HC_gene_1238_tx_6 1 + 489485 491044 . 2 957,540 0,1020 -chrIV 489485 491044 HC_gene_1238_tx_7 2 + 489485 491044 . 2 832,638 0,922 -chrIV 489485 491044 HC_gene_1238_tx_8 2 + 489485 491044 . 2 832,682 0,878 -chrIV 489485 491044 HC_gene_1238_tx_9 1 + 489485 491044 . 2 1111,386 0,1174 -chrIV 489485 491044 HC_gene_1238_tx_10 1 + 489485 491044 . 2 858,635 0,925 -chrIV 489485 491044 HC_gene_1238_tx_11 1 + 489485 491044 . 2 888,617 0,943 -chrIV 489485 491044 HC_gene_1238_tx_12 1 + 489485 491044 . 2 716,795 0,765 -chrIV 489485 491044 HC_gene_1238_tx_13 1 + 489485 491044 . 2 408,906 0,654 -chrIV 489485 491044 HC_gene_1238_tx_14 1 + 489485 491044 . 2 858,628 0,932 -chrIV 489485 491044 HC_gene_1238_tx_15 1 + 489485 491044 . 2 948,571 0,989 -chrIV 489485 491044 HC_gene_1238_tx_16 1 + 489485 491044 . 2 894,565 0,995 -chrIV 489485 491044 HC_gene_1238_tx_17 1 + 489485 491044 . 2 394,617 0,943 -chrIV 489724 491044 HC_gene_1238_tx_18 64 + 489724 491044 . 1 1321 0 -chrIV 489724 491044 HC_gene_1238_tx_19 1 + 489724 491044 . 2 481,393 0,928 -chrIV 489724 491044 HC_gene_1238_tx_20 1 + 489724 491044 . 2 1214,55 0,1266 -chrIV 489724 491044 HC_gene_1238_tx_21 1 + 489724 491044 . 2 169,1089 0,232 -chrIV 489921 491044 HC_gene_1238_tx_22 41 + 489921 491044 . 1 1124 0 -chrIV 490060 491044 HC_gene_1238_tx_23 20 + 490060 491044 . 1 985 0 -chrIV 490115 491044 HC_gene_1238_tx_24 66 + 490115 491044 . 1 930 0 -chrIV 490217 491044 HC_gene_1238_tx_25 16 + 490217 491044 . 1 828 0 -chrIV 490279 491044 HC_gene_1238_tx_26 44 + 490279 491044 . 1 766 0 -chrIV 490279 491044 HC_gene_1238_tx_27 1 + 490279 491044 . 2 654,55 0,711 -chrIV 490379 491044 HC_gene_1238_tx_28 40 + 490379 491044 . 1 666 0 -chrIV 490450 491044 HC_gene_1238_tx_29 94 + 490450 491044 . 1 595 0 -chrIV 490679 491044 HC_gene_1238_tx_30 74 + 490679 491044 . 1 366 0 -chrIV 491315 492414 HC_gene_1239_tx_1 2 + 491315 492414 . 2 245,516 0,584 -chrIV 491315 492414 HC_gene_1239_tx_2 2 + 491315 492414 . 1 1100 0 -chrIV 491500 492414 HC_gene_1239_tx_3 1328 + 491500 492414 . 2 60,516 0,399 -chrIV 491500 492414 HC_gene_1239_tx_4 10 + 491500 492414 . 2 49,509 0,406 -chrIV 491500 492414 HC_gene_1239_tx_5 3 + 491500 492414 . 2 56,507 0,408 -chrIV 491500 492414 HC_gene_1239_tx_6 71 + 491500 492414 . 1 915 0 -chrIV 491500 492414 HC_gene_1239_tx_7 2 + 491500 492414 . 2 33,516 0,399 -chrIV 491500 492414 HC_gene_1239_tx_8 8 + 491500 492414 . 2 57,507 0,408 -chrIV 491500 492414 HC_gene_1239_tx_9 4 + 491500 492414 . 2 47,516 0,399 -chrIV 491500 492414 HC_gene_1239_tx_10 2 + 491500 492414 . 2 53,509 0,406 -chrIV 491500 492414 HC_gene_1239_tx_11 4 + 491500 492414 . 2 60,505 0,410 -chrIV 491500 492414 HC_gene_1239_tx_12 2 + 491500 492414 . 2 58,509 0,406 -chrIV 491500 492414 HC_gene_1239_tx_13 10 + 491500 492414 . 2 60,502 0,413 -chrIV 491500 492414 HC_gene_1239_tx_14 2 + 491500 492414 . 2 60,489 0,426 -chrIV 491500 492414 HC_gene_1239_tx_15 2 + 491500 492414 . 2 64,509 0,406 -chrIV 491500 492414 HC_gene_1239_tx_16 2 + 491500 492414 . 2 55,509 0,406 -chrIV 491500 492414 HC_gene_1239_tx_17 2 + 491500 492414 . 2 60,499 0,416 -chrIV 491500 492414 HC_gene_1239_tx_18 2 + 491500 492414 . 2 49,507 0,408 -chrIV 491500 492414 HC_gene_1239_tx_19 6 + 491500 492414 . 2 60,508 0,407 -chrIV 491500 492414 HC_gene_1239_tx_20 2 + 491500 492414 . 2 54,509 0,406 -chrIV 491668 492414 HC_gene_1239_tx_21 8 + 491668 492414 . 1 747 0 -chrIV 491926 492414 HC_gene_1239_tx_22 570 + 491926 492414 . 1 489 0 -chrIV 492070 492414 HC_gene_1239_tx_23 361 + 492070 492414 . 1 345 0 -chrIV 492343 494177 HC_gene_1850_tx_1 4 - 492343 494177 . 1 1835 0 -chrIV 492343 494419 HC_gene_1850_tx_2 10 - 492343 494419 . 1 2077 0 -chrIV 492343 494419 HC_gene_1850_tx_3 1 - 492343 494419 . 2 803,1191 0,886 -chrIV 492437 493626 LC_gene_1240_tx_1 1 + 492437 493626 . 1 1190 0 -chrIV 492463 494177 HC_gene_1850_tx_4 4 - 492463 494177 . 1 1715 0 -chrIV 492463 494419 HC_gene_1850_tx_5 11 - 492463 494419 . 1 1957 0 -chrIV 492463 494419 HC_gene_1850_tx_6 1 - 492463 494419 . 2 796,1057 0,900 -chrIV 492463 494419 HC_gene_1850_tx_7 1 - 492463 494419 . 2 810,1050 0,907 -chrIV 493240 494419 HC_gene_1850_tx_8 2 - 493240 494419 . 1 1180 0 -chrIV 494561 495836 HC_gene_1851_tx_1 3 - 494561 495836 . 1 1276 0 -chrIV 494561 496712 HC_gene_1851_tx_2 1 - 494561 496712 . 1 2152 0 -chrIV 494561 497191 HC_gene_1851_tx_3 2 - 494561 497191 . 1 2631 0 -chrIV 494561 497431 HC_gene_1851_tx_4 11 - 494561 497431 . 1 2871 0 -chrIV 495303 497431 HC_gene_1851_tx_5 2 - 495303 497431 . 1 2129 0 -chrIV 495309 495836 HC_gene_1851_tx_7 1 - 495309 495836 . 1 528 0 -chrIV 495310 497431 HC_gene_1851_tx_6 1 - 495310 497431 . 1 2122 0 -chrIV 497411 500243 HC_gene_1852_tx_1 1 - 497411 500243 . 1 2833 0 -chrIV 497556 498101 HC_gene_1852_tx_14 18 - 497556 498101 . 1 546 0 -chrIV 497556 498473 HC_gene_1852_tx_16 10 - 497556 498473 . 1 918 0 -chrIV 497556 498976 HC_gene_1852_tx_17 5 - 497556 498976 . 1 1421 0 -chrIV 497556 498976 HC_gene_1852_tx_18 1 - 497556 498976 . 2 48,1306 0,115 -chrIV 497556 499747 HC_gene_1852_tx_2 1 - 497556 499747 . 2 629,1341 0,851 -chrIV 497556 499747 HC_gene_1852_tx_3 1 - 497556 499747 . 1 2192 0 -chrIV 497556 500232 HC_gene_1852_tx_4 1 - 497556 500232 . 1 2677 0 -chrIV 497556 500472 HC_gene_1852_tx_5 1 - 497556 500472 . 1 2917 0 -chrIV 497556 500736 HC_gene_1852_tx_6 1 - 497556 500736 . 1 3181 0 -chrIV 497556 501348 HC_gene_1852_tx_7 1 - 497556 501348 . 2 2313,668 0,3125 -chrIV 497556 501348 HC_gene_1852_tx_8 4 - 497556 501348 . 1 3793 0 -chrIV 497556 501348 HC_gene_1852_tx_9 1 - 497556 501348 . 2 780,2972 0,821 -chrIV 497556 501524 HC_gene_1852_tx_10 1 - 497556 501524 . 1 3969 0 -chrIV 497664 498101 HC_gene_1852_tx_15 3 - 497664 498101 . 1 438 0 -chrIV 497664 498976 HC_gene_1852_tx_19 5 - 497664 498976 . 1 1313 0 -chrIV 497664 499747 HC_gene_1852_tx_11 2 - 497664 499747 . 1 2084 0 -chrIV 497664 501273 HC_gene_1852_tx_12 1 - 497664 501273 . 1 3610 0 -chrIV 497664 501348 HC_gene_1852_tx_13 3 - 497664 501348 . 1 3685 0 -chrIV 501381 501703 HC_gene_1241_tx_1 1 + 501381 501703 . 1 323 0 -chrIV 501507 501703 HC_gene_1241_tx_2 20 + 501507 501703 . 1 197 0 -chrIV 501612 503282 HC_gene_1853_tx_1 2 - 501612 503282 . 1 1671 0 -chrIV 501704 503282 HC_gene_1853_tx_2 3 - 501704 503282 . 1 1579 0 -chrIV 501776 502129 MC_gene_1242_tx_1 1 + 501776 502129 . 1 354 0 -chrIV 501816 503282 HC_gene_1853_tx_3 4 - 501816 503282 . 1 1467 0 -chrIV 503490 504030 HC_gene_1243_tx_1 125 + 503490 504030 . 1 541 0 -chrIV 503945 504410 HC_gene_1854_tx_1 94 - 503945 504410 . 1 466 0 -chrIV 503945 504549 HC_gene_1854_tx_2 46 - 503945 504549 . 1 605 0 -chrIV 503945 504622 HC_gene_1854_tx_3 58 - 503945 504622 . 1 678 0 -chrIV 503945 504755 HC_gene_1854_tx_4 589 - 503945 504755 . 1 811 0 -chrIV 505088 505411 MC_gene_1244_tx_1 1 + 505088 505411 . 1 324 0 -chrIV 505194 505734 MC_gene_1855_tx_1 1 - 505194 505734 . 1 541 0 -chrIV 505906 506530 MC_gene_1245_tx_1 1 + 505906 506530 . 1 625 0 -chrIV 506377 506923 HC_gene_1856_tx_1 2 - 506377 506923 . 1 547 0 -chrIV 506377 507166 HC_gene_1856_tx_2 1 - 506377 507166 . 1 790 0 -chrIV 506551 509311 HC_gene_1246_tx_1 1 + 506551 509311 . 1 2761 0 -chrIV 506551 509559 HC_gene_1246_tx_2 1 + 506551 509559 . 2 717,1963 0,1046 -chrIV 507626 508073 HC_gene_1246_tx_3 1 + 507626 508073 . 1 448 0 -chrIV 507626 509559 HC_gene_1246_tx_4 3 + 507626 509559 . 1 1934 0 -chrIV 507778 509269 HC_gene_1246_tx_5 1 + 507778 509269 . 1 1492 0 -chrIV 507778 509298 HC_gene_1246_tx_6 1 + 507778 509298 . 1 1521 0 -chrIV 507778 509304 HC_gene_1246_tx_7 1 + 507778 509304 . 1 1527 0 -chrIV 507778 509309 HC_gene_1246_tx_8 1 + 507778 509309 . 1 1532 0 -chrIV 507778 509320 HC_gene_1246_tx_9 1 + 507778 509320 . 1 1543 0 -chrIV 507778 509326 HC_gene_1246_tx_10 1 + 507778 509326 . 1 1549 0 -chrIV 507778 509408 HC_gene_1246_tx_11 1 + 507778 509408 . 1 1631 0 -chrIV 507778 509427 HC_gene_1246_tx_12 1 + 507778 509427 . 1 1650 0 -chrIV 507778 509441 HC_gene_1246_tx_13 1 + 507778 509441 . 2 410,389 0,1275 -chrIV 507778 509453 HC_gene_1246_tx_14 1 + 507778 509453 . 1 1676 0 -chrIV 507778 509559 HC_gene_1246_tx_15 135 + 507778 509559 . 1 1782 0 -chrIV 507778 509559 HC_gene_1246_tx_16 1 + 507778 509559 . 2 205,1475 0,307 -chrIV 507778 509750 HC_gene_1246_tx_17 2 + 507778 509750 . 1 1973 0 -chrIV 507900 509280 HC_gene_1246_tx_18 1 + 507900 509280 . 1 1381 0 -chrIV 507900 509291 HC_gene_1246_tx_19 1 + 507900 509291 . 1 1392 0 -chrIV 507900 509292 HC_gene_1246_tx_20 1 + 507900 509292 . 1 1393 0 -chrIV 507900 509311 HC_gene_1246_tx_21 1 + 507900 509311 . 1 1412 0 -chrIV 507900 509311 HC_gene_1246_tx_22 1 + 507900 509311 . 2 144,980 0,432 -chrIV 507900 509315 HC_gene_1246_tx_23 1 + 507900 509315 . 1 1416 0 -chrIV 507900 509317 HC_gene_1246_tx_24 1 + 507900 509317 . 1 1418 0 -chrIV 507900 509318 HC_gene_1246_tx_25 1 + 507900 509318 . 1 1419 0 -chrIV 507900 509326 HC_gene_1246_tx_26 4 + 507900 509326 . 1 1427 0 -chrIV 507900 509330 HC_gene_1246_tx_27 2 + 507900 509330 . 1 1431 0 -chrIV 507900 509343 HC_gene_1246_tx_28 2 + 507900 509343 . 1 1444 0 -chrIV 507900 509345 HC_gene_1246_tx_29 1 + 507900 509345 . 1 1446 0 -chrIV 507900 509352 HC_gene_1246_tx_30 1 + 507900 509352 . 1 1453 0 -chrIV 507900 509372 HC_gene_1246_tx_31 1 + 507900 509372 . 1 1473 0 -chrIV 507900 509387 HC_gene_1246_tx_32 1 + 507900 509387 . 1 1488 0 -chrIV 507900 509389 HC_gene_1246_tx_33 1 + 507900 509389 . 1 1490 0 -chrIV 507900 509392 HC_gene_1246_tx_34 1 + 507900 509392 . 2 191,879 0,614 -chrIV 507900 509393 HC_gene_1246_tx_35 1 + 507900 509393 . 1 1494 0 -chrIV 507900 509402 HC_gene_1246_tx_36 1 + 507900 509402 . 1 1503 0 -chrIV 507900 509406 HC_gene_1246_tx_37 1 + 507900 509406 . 1 1507 0 -chrIV 507900 509413 HC_gene_1246_tx_38 2 + 507900 509413 . 1 1514 0 -chrIV 507900 509414 HC_gene_1246_tx_39 1 + 507900 509414 . 1 1515 0 -chrIV 507900 509424 HC_gene_1246_tx_40 2 + 507900 509424 . 1 1525 0 -chrIV 507900 509428 HC_gene_1246_tx_41 1 + 507900 509428 . 1 1529 0 -chrIV 507900 509433 HC_gene_1246_tx_42 1 + 507900 509433 . 1 1534 0 -chrIV 507900 509437 HC_gene_1246_tx_43 1 + 507900 509437 . 1 1538 0 -chrIV 507900 509439 HC_gene_1246_tx_44 1 + 507900 509439 . 1 1540 0 -chrIV 507900 509441 HC_gene_1246_tx_45 1 + 507900 509441 . 1 1542 0 -chrIV 507900 509442 HC_gene_1246_tx_46 1 + 507900 509442 . 1 1543 0 -chrIV 507900 509443 HC_gene_1246_tx_47 1 + 507900 509443 . 1 1544 0 -chrIV 507900 509446 HC_gene_1246_tx_48 1 + 507900 509446 . 1 1547 0 -chrIV 507900 509452 HC_gene_1246_tx_49 1 + 507900 509452 . 1 1553 0 -chrIV 507900 509559 HC_gene_1246_tx_50 777 + 507900 509559 . 1 1660 0 -chrIV 507900 509559 HC_gene_1246_tx_51 1 + 507900 509559 . 2 569,985 0,675 -chrIV 507900 509559 HC_gene_1246_tx_52 1 + 507900 509559 . 3 449,531,560 0,506,1100 -chrIV 507900 509559 HC_gene_1246_tx_53 1 + 507900 509559 . 2 1039,465 0,1195 -chrIV 507900 509559 HC_gene_1246_tx_54 1 + 507900 509559 . 2 1199,383 0,1277 -chrIV 507900 509559 HC_gene_1246_tx_55 1 + 507900 509559 . 2 931,603 0,1057 -chrIV 507900 509559 HC_gene_1246_tx_56 1 + 507900 509559 . 2 888,554 0,1106 -chrIV 507900 509559 HC_gene_1246_tx_57 1 + 507900 509559 . 2 1273,320 0,1340 -chrIV 507900 509559 HC_gene_1246_tx_58 1 + 507900 509559 . 3 342,457,408 0,463,1252 -chrIV 507900 509559 HC_gene_1246_tx_59 1 + 507900 509559 . 2 309,887 0,773 -chrIV 507900 509559 HC_gene_1246_tx_60 1 + 507900 509559 . 2 428,547 0,1113 -chrIV 507900 509559 HC_gene_1246_tx_61 1 + 507900 509559 . 2 524,1003 0,657 -chrIV 507900 509559 HC_gene_1246_tx_62 1 + 507900 509559 . 2 248,714 0,946 -chrIV 507900 509559 HC_gene_1246_tx_63 1 + 507900 509559 . 2 1289,320 0,1340 -chrIV 507900 509559 HC_gene_1246_tx_64 1 + 507900 509559 . 2 536,1046 0,614 -chrIV 507900 509750 HC_gene_1246_tx_65 1 + 507900 509750 . 2 203,656 0,1195 -chrIV 507900 509750 HC_gene_1246_tx_66 15 + 507900 509750 . 1 1851 0 -chrIV 508213 509309 HC_gene_1246_tx_67 1 + 508213 509309 . 1 1097 0 -chrIV 508213 509317 HC_gene_1246_tx_68 2 + 508213 509317 . 1 1105 0 -chrIV 508213 509326 HC_gene_1246_tx_69 1 + 508213 509326 . 1 1114 0 -chrIV 508213 509336 HC_gene_1246_tx_70 1 + 508213 509336 . 1 1124 0 -chrIV 508213 509353 HC_gene_1246_tx_71 1 + 508213 509353 . 1 1141 0 -chrIV 508213 509385 HC_gene_1246_tx_72 1 + 508213 509385 . 1 1173 0 -chrIV 508213 509438 HC_gene_1246_tx_73 2 + 508213 509438 . 1 1226 0 -chrIV 508213 509450 HC_gene_1246_tx_74 1 + 508213 509450 . 1 1238 0 -chrIV 508213 509559 HC_gene_1246_tx_75 149 + 508213 509559 . 1 1347 0 -chrIV 508213 509559 HC_gene_1246_tx_76 1 + 508213 509559 . 2 350,919 0,428 -chrIV 508213 509559 HC_gene_1246_tx_77 1 + 508213 509559 . 2 607,383 0,964 -chrIV 508213 509559 HC_gene_1246_tx_78 1 + 508213 509559 . 2 604,492 0,855 -chrIV 508213 509559 HC_gene_1246_tx_79 1 + 508213 509559 . 2 918,366 0,981 -chrIV 508213 509559 HC_gene_1246_tx_80 1 + 508213 509559 . 2 658,589 0,758 -chrIV 508213 509559 HC_gene_1246_tx_81 1 + 508213 509559 . 2 380,627 0,720 -chrIV 508831 509292 HC_gene_1246_tx_82 1 + 508831 509292 . 1 462 0 -chrIV 508831 509294 HC_gene_1246_tx_83 1 + 508831 509294 . 1 464 0 -chrIV 508831 509305 HC_gene_1246_tx_84 1 + 508831 509305 . 1 475 0 -chrIV 508831 509306 HC_gene_1246_tx_85 1 + 508831 509306 . 1 476 0 -chrIV 508831 509308 HC_gene_1246_tx_86 1 + 508831 509308 . 1 478 0 -chrIV 508831 509311 HC_gene_1246_tx_87 1 + 508831 509311 . 1 481 0 -chrIV 508831 509318 HC_gene_1246_tx_88 1 + 508831 509318 . 1 488 0 -chrIV 508831 509326 HC_gene_1246_tx_89 2 + 508831 509326 . 1 496 0 -chrIV 508831 509333 HC_gene_1246_tx_90 1 + 508831 509333 . 1 503 0 -chrIV 508831 509337 HC_gene_1246_tx_91 1 + 508831 509337 . 1 507 0 -chrIV 508831 509360 HC_gene_1246_tx_92 1 + 508831 509360 . 1 530 0 -chrIV 508831 509380 HC_gene_1246_tx_93 1 + 508831 509380 . 1 550 0 -chrIV 508831 509400 HC_gene_1246_tx_94 1 + 508831 509400 . 1 570 0 -chrIV 508831 509403 HC_gene_1246_tx_95 1 + 508831 509403 . 1 573 0 -chrIV 508831 509428 HC_gene_1246_tx_96 1 + 508831 509428 . 1 598 0 -chrIV 508831 509429 HC_gene_1246_tx_97 1 + 508831 509429 . 1 599 0 -chrIV 508831 509452 HC_gene_1246_tx_98 1 + 508831 509452 . 1 622 0 -chrIV 508831 509559 HC_gene_1246_tx_99 466 + 508831 509559 . 1 729 0 -chrIV 508831 509559 HC_gene_1246_tx_100 1 + 508831 509559 . 2 303,383 0,346 -chrIV 508831 509559 HC_gene_1246_tx_101 1 + 508831 509559 . 2 202,465 0,264 -chrIV 508831 509559 HC_gene_1246_tx_102 1 + 508831 509559 . 2 112,455 0,274 -chrIV 508831 509750 HC_gene_1246_tx_105 8 + 508831 509750 . 1 920 0 -chrIV 508965 509272 HC_gene_1246_tx_108 1 + 508965 509272 . 1 308 0 -chrIV 508965 509280 HC_gene_1246_tx_109 1 + 508965 509280 . 1 316 0 -chrIV 508965 509284 HC_gene_1246_tx_110 1 + 508965 509284 . 1 320 0 -chrIV 508965 509326 HC_gene_1246_tx_111 1 + 508965 509326 . 1 362 0 -chrIV 508965 509354 HC_gene_1246_tx_112 1 + 508965 509354 . 1 390 0 -chrIV 508965 509559 HC_gene_1246_tx_103 203 + 508965 509559 . 1 595 0 -chrIV 508965 509750 HC_gene_1246_tx_106 6 + 508965 509750 . 1 786 0 -chrIV 509047 509452 HC_gene_1246_tx_113 1 + 509047 509452 . 1 406 0 -chrIV 509047 509559 HC_gene_1246_tx_104 63 + 509047 509559 . 1 513 0 -chrIV 509047 509750 HC_gene_1246_tx_107 1 + 509047 509750 . 1 704 0 -chrIV 509440 511551 HC_gene_1857_tx_1 2 - 509440 511551 . 1 2112 0 -chrIV 509440 512059 HC_gene_1857_tx_2 3 - 509440 512059 . 1 2620 0 -chrIV 509440 512253 HC_gene_1857_tx_3 3 - 509440 512253 . 1 2814 0 -chrIV 509648 511551 HC_gene_1857_tx_4 2 - 509648 511551 . 1 1904 0 -chrIV 509648 511850 HC_gene_1857_tx_5 2 - 509648 511850 . 1 2203 0 -chrIV 509648 512059 HC_gene_1857_tx_6 4 - 509648 512059 . 1 2412 0 -chrIV 509648 512159 HC_gene_1857_tx_7 1 - 509648 512159 . 1 2512 0 -chrIV 509648 512253 HC_gene_1857_tx_8 1 - 509648 512253 . 1 2606 0 -chrIV 509648 512753 HC_gene_1857_tx_9 2 - 509648 512753 . 1 3106 0 -chrIV 509648 512753 HC_gene_1857_tx_10 1 - 509648 512753 . 2 1405,1613 0,1493 -chrIV 510851 511551 HC_gene_1857_tx_11 1 - 510851 511551 . 1 701 0 -chrIV 510851 512059 HC_gene_1857_tx_12 2 - 510851 512059 . 1 1209 0 -chrIV 510851 512059 HC_gene_1857_tx_13 1 - 510851 512059 . 2 684,272 0,937 -chrIV 510856 512059 HC_gene_1857_tx_14 1 - 510856 512059 . 1 1204 0 -chrIV 510856 512253 HC_gene_1857_tx_15 1 - 510856 512253 . 1 1398 0 -chrIV 512558 512842 HC_gene_1247_tx_1 6 + 512558 512842 . 1 285 0 -chrIV 512558 512981 HC_gene_1247_tx_2 1 + 512558 512981 . 1 424 0 -chrIV 512558 513026 HC_gene_1247_tx_3 1 + 512558 513026 . 1 469 0 -chrIV 512558 513036 HC_gene_1247_tx_4 1 + 512558 513036 . 1 479 0 -chrIV 512558 513038 HC_gene_1247_tx_5 1 + 512558 513038 . 1 481 0 -chrIV 512558 513132 HC_gene_1247_tx_6 1 + 512558 513132 . 1 575 0 -chrIV 512558 513133 HC_gene_1247_tx_7 1 + 512558 513133 . 1 576 0 -chrIV 512558 513142 HC_gene_1247_tx_8 1 + 512558 513142 . 1 585 0 -chrIV 512558 513667 HC_gene_1247_tx_11 3 + 512558 513667 . 1 1110 0 -chrIV 512644 512842 HC_gene_1247_tx_13 1 + 512644 512842 . 1 199 0 -chrIV 512644 512990 HC_gene_1247_tx_9 1 + 512644 512990 . 1 347 0 -chrIV 512644 513039 HC_gene_1247_tx_10 1 + 512644 513039 . 1 396 0 -chrIV 512644 513667 HC_gene_1247_tx_12 1 + 512644 513667 . 1 1024 0 -chrIV 513691 518730 MC_gene_1858_tx_1 1 - 513691 518730 . 1 5040 0 -chrIV 517988 519420 LC_gene_1248_tx_1 1 + 517988 519420 . 1 1433 0 -chrIV 519390 520212 LC_gene_1859_tx_1 1 - 519390 520212 . 1 823 0 -chrIV 520044 521209 LC_gene_1249_tx_1 1 + 520044 521209 . 1 1166 0 -chrIV 520213 520616 MC_gene_1860_tx_1 1 - 520213 520616 . 1 404 0 -chrIV 521137 521458 MC_gene_1861_tx_1 1 - 521137 521458 . 1 322 0 -chrIV 521674 523206 HC_gene_1250_tx_1 2 + 521674 523206 . 1 1533 0 -chrIV 521736 523206 HC_gene_1250_tx_2 318 + 521736 523206 . 1 1471 0 -chrIV 521736 523206 HC_gene_1250_tx_3 1 + 521736 523206 . 2 324,1091 0,380 -chrIV 521736 523206 HC_gene_1250_tx_4 1 + 521736 523206 . 2 564,841 0,630 -chrIV 521736 523206 HC_gene_1250_tx_5 1 + 521736 523206 . 2 285,994 0,477 -chrIV 521736 523206 HC_gene_1250_tx_6 1 + 521736 523206 . 2 898,369 0,1102 -chrIV 521736 523206 HC_gene_1250_tx_7 1 + 521736 523206 . 2 127,1285 0,186 -chrIV 521736 523206 HC_gene_1250_tx_8 1 + 521736 523206 . 2 807,575 0,896 -chrIV 521736 523206 HC_gene_1250_tx_9 1 + 521736 523206 . 2 126,1034 0,437 -chrIV 521736 523206 HC_gene_1250_tx_10 1 + 521736 523206 . 2 201,1201 0,270 -chrIV 521743 523206 HC_gene_1250_tx_11 1 + 521743 523206 . 2 871,540 0,924 -chrIV 521811 523206 HC_gene_1250_tx_12 1 + 521811 523206 . 2 465,801 0,595 -chrIV 522159 523206 HC_gene_1250_tx_13 29 + 522159 523206 . 1 1048 0 -chrIV 522269 523206 HC_gene_1250_tx_14 44 + 522269 523206 . 1 938 0 -chrIV 522269 523206 HC_gene_1250_tx_15 1 + 522269 523206 . 2 369,517 0,421 -chrIV 522413 523206 HC_gene_1250_tx_16 32 + 522413 523206 . 1 794 0 -chrIV 522545 523206 HC_gene_1250_tx_17 86 + 522545 523206 . 1 662 0 -chrIV 522545 523206 HC_gene_1250_tx_18 1 + 522545 523206 . 2 94,488 0,174 -chrIV 522611 523206 HC_gene_1250_tx_19 50 + 522611 523206 . 1 596 0 -chrIV 522611 523206 HC_gene_1250_tx_20 1 + 522611 523206 . 2 209,316 0,280 -chrIV 522728 523206 HC_gene_1250_tx_21 99 + 522728 523206 . 1 479 0 -chrIV 523081 524767 HC_gene_1862_tx_1 37 - 523081 524767 . 1 1687 0 -chrIV 524989 525383 HC_gene_1251_tx_1 11 + 524989 525383 . 1 395 0 -chrIV 525075 525383 HC_gene_1251_tx_2 2 + 525075 525383 . 1 309 0 -chrIV 525418 527298 HC_gene_1252_tx_1 459 + 525418 527298 . 1 1881 0 -chrIV 525418 527298 HC_gene_1252_tx_2 2 + 525418 527298 . 2 1091,753 0,1128 -chrIV 525418 527298 HC_gene_1252_tx_3 1 + 525418 527298 . 2 959,869 0,1012 -chrIV 525418 527298 HC_gene_1252_tx_4 1 + 525418 527298 . 2 826,850 0,1031 -chrIV 525418 527298 HC_gene_1252_tx_5 1 + 525418 527298 . 2 35,1632 0,249 -chrIV 525418 527298 HC_gene_1252_tx_6 1 + 525418 527298 . 2 1345,486 0,1395 -chrIV 525418 527298 HC_gene_1252_tx_7 1 + 525418 527298 . 2 959,850 0,1031 -chrIV 525418 527298 HC_gene_1252_tx_8 1 + 525418 527298 . 2 1022,753 0,1128 -chrIV 525418 527298 HC_gene_1252_tx_9 1 + 525418 527298 . 2 1300,476 0,1405 -chrIV 525418 527298 HC_gene_1252_tx_10 1 + 525418 527298 . 2 1240,598 0,1283 -chrIV 525418 527298 HC_gene_1252_tx_11 1 + 525418 527298 . 2 939,843 0,1038 -chrIV 525418 527298 HC_gene_1252_tx_12 2 + 525418 527298 . 2 1091,742 0,1139 -chrIV 525418 527298 HC_gene_1252_tx_13 1 + 525418 527298 . 2 1033,753 0,1128 -chrIV 525421 527298 HC_gene_1252_tx_14 1 + 525421 527298 . 2 1056,753 0,1125 -chrIV 525989 527298 HC_gene_1252_tx_15 77 + 525989 527298 . 1 1310 0 -chrIV 525989 527298 HC_gene_1252_tx_16 1 + 525989 527298 . 2 187,949 0,361 -chrIV 526136 527298 HC_gene_1252_tx_17 59 + 526136 527298 . 1 1163 0 -chrIV 526136 527298 HC_gene_1252_tx_18 1 + 526136 527298 . 2 734,364 0,799 -chrIV 526277 527298 HC_gene_1252_tx_19 64 + 526277 527298 . 1 1022 0 -chrIV 526277 527298 HC_gene_1252_tx_20 1 + 526277 527298 . 2 406,493 0,529 -chrIV 526379 527298 HC_gene_1252_tx_21 55 + 526379 527298 . 1 920 0 -chrIV 526379 527298 HC_gene_1252_tx_22 1 + 526379 527298 . 2 386,375 0,545 -chrIV 526465 527298 HC_gene_1252_tx_23 47 + 526465 527298 . 1 834 0 -chrIV 526532 527298 HC_gene_1252_tx_24 73 + 526532 527298 . 1 767 0 -chrIV 526890 527298 HC_gene_1252_tx_25 155 + 526890 527298 . 1 409 0 -chrIV 527280 533375 MC_gene_1863_tx_1 1 - 527280 533375 . 3 1146,336,337 0,1495,5759 -chrIV 527632 538563 MC_gene_1253_tx_1 1 + 527632 538563 . 3 929,492,1264 0,5331,9668 -chrIV 535069 538615 MC_gene_1864_tx_1 1 - 535069 538615 . 1 3547 0 -chrIV 538681 539576 MC_gene_1865_tx_1 1 - 538681 539576 . 1 896 0 -chrIV 539762 540603 HC_gene_1254_tx_1 111 + 539762 540603 . 1 842 0 -chrIV 539762 540603 HC_gene_1254_tx_2 1 + 539762 540603 . 2 527,269 0,573 -chrIV 539762 540603 HC_gene_1254_tx_3 1 + 539762 540603 . 2 683,93 0,749 -chrIV 540058 540603 HC_gene_1254_tx_4 5 + 540058 540603 . 1 546 0 -chrIV 540139 540603 HC_gene_1254_tx_5 22 + 540139 540603 . 1 465 0 -chrIV 540508 541031 HC_gene_1866_tx_1 4 - 540508 541031 . 1 524 0 -chrIV 540508 541267 HC_gene_1866_tx_2 2 - 540508 541267 . 1 760 0 -chrIV 540508 541414 HC_gene_1866_tx_3 4 - 540508 541414 . 1 907 0 -chrIV 541136 541767 HC_gene_1867_tx_1 1 - 541136 541767 . 1 632 0 -chrIV 541138 541767 HC_gene_1867_tx_2 1 - 541138 541767 . 1 630 0 -chrIV 541231 541767 HC_gene_1867_tx_3 2 - 541231 541767 . 1 537 0 -chrIV 541307 541767 HC_gene_1867_tx_4 1 - 541307 541767 . 1 461 0 -chrIV 541598 542311 HC_gene_1867_tx_5 1 - 541598 542311 . 1 714 0 -chrIV 541613 541767 HC_gene_1867_tx_8 1 - 541613 541767 . 1 155 0 -chrIV 541613 542311 HC_gene_1867_tx_6 1 - 541613 542311 . 1 699 0 -chrIV 541648 542311 HC_gene_1867_tx_7 1 - 541648 542311 . 1 664 0 -chrIV 542058 542676 MC_gene_1255_tx_1 1 + 542058 542676 . 1 619 0 -chrIV 542335 542693 MC_gene_1256_tx_1 1 + 542335 542693 . 1 359 0 -chrIV 542548 543313 HC_gene_1868_tx_1 5 - 542548 543313 . 1 766 0 -chrIV 542548 543446 HC_gene_1868_tx_2 3 - 542548 543446 . 1 899 0 -chrIV 542548 543567 HC_gene_1868_tx_3 32 - 542548 543567 . 1 1020 0 -chrIV 542548 543567 HC_gene_1868_tx_4 1 - 542548 543567 . 2 268,601 0,419 -chrIV 542579 543599 MC_gene_1257_tx_1 1 + 542579 543599 . 1 1021 0 -chrIV 544074 544409 HC_gene_1258_tx_1 1 + 544074 544409 . 1 336 0 -chrIV 544074 544500 HC_gene_1258_tx_2 1 + 544074 544500 . 1 427 0 -chrIV 544074 544826 HC_gene_1258_tx_3 4 + 544074 544826 . 1 753 0 -chrIV 544241 544826 HC_gene_1258_tx_4 2 + 544241 544826 . 1 586 0 -chrIV 544358 544826 HC_gene_1258_tx_5 4 + 544358 544826 . 1 469 0 -chrIV 544534 544826 HC_gene_1258_tx_6 27 + 544534 544826 . 1 293 0 -chrIV 544740 545145 HC_gene_1869_tx_1 7 - 544740 545145 . 1 406 0 -chrIV 544740 545766 HC_gene_1869_tx_2 2 - 544740 545766 . 1 1027 0 -chrIV 544940 545145 HC_gene_1869_tx_4 1 - 544940 545145 . 1 206 0 -chrIV 544940 545766 HC_gene_1869_tx_3 2 - 544940 545766 . 1 827 0 -chrIV 545319 545847 LC_gene_1259_tx_1 1 + 545319 545847 . 1 529 0 -chrIV 546598 547772 HC_gene_1260_tx_1 254 + 546598 547772 . 1 1175 0 -chrIV 547101 547772 HC_gene_1260_tx_2 39 + 547101 547772 . 1 672 0 -chrIV 547224 547772 HC_gene_1260_tx_3 52 + 547224 547772 . 1 549 0 -chrIV 547678 548202 HC_gene_1870_tx_1 7 - 547678 548202 . 1 525 0 -chrIV 547678 548466 HC_gene_1870_tx_3 22 - 547678 548466 . 1 789 0 -chrIV 547678 548466 HC_gene_1870_tx_4 1 - 547678 548466 . 2 505,214 0,575 -chrIV 547756 548202 HC_gene_1870_tx_2 22 - 547756 548202 . 1 447 0 -chrIV 547756 548453 HC_gene_1870_tx_5 1 - 547756 548453 . 2 238,252 0,446 -chrIV 547756 548466 HC_gene_1870_tx_6 180 - 547756 548466 . 1 711 0 -chrIV 547756 548466 HC_gene_1870_tx_7 1 - 547756 548466 . 2 518,76 0,635 -chrIV 547756 548466 HC_gene_1870_tx_8 1 - 547756 548466 . 2 404,214 0,497 -chrIV 548678 549317 HC_gene_1871_tx_1 23 - 548678 549317 . 1 640 0 -chrIV 548678 549725 HC_gene_1871_tx_2 19 - 548678 549725 . 1 1048 0 -chrIV 548678 550671 HC_gene_1871_tx_3 82 - 548678 550671 . 1 1994 0 -chrIV 548678 550671 HC_gene_1871_tx_4 1 - 548678 550671 . 2 1838,110 0,1884 -chrIV 548678 550671 HC_gene_1871_tx_5 1 - 548678 550671 . 2 1401,460 0,1534 -chrIV 551735 553041 HC_gene_1261_tx_1 108 + 551735 553041 . 1 1307 0 -chrIV 551735 553041 HC_gene_1261_tx_2 1 + 551735 553041 . 2 867,365 0,942 -chrIV 551735 553041 HC_gene_1261_tx_3 1 + 551735 553041 . 2 1053,201 0,1106 -chrIV 551735 553041 HC_gene_1261_tx_4 1 + 551735 553041 . 2 491,378 0,929 -chrIV 552054 553041 HC_gene_1261_tx_5 17 + 552054 553041 . 1 988 0 -chrIV 552131 553041 HC_gene_1261_tx_6 15 + 552131 553041 . 1 911 0 -chrIV 552443 553041 HC_gene_1261_tx_7 12 + 552443 553041 . 1 599 0 -chrIV 552511 553041 HC_gene_1261_tx_8 25 + 552511 553041 . 1 531 0 -chrIV 553225 555312 HC_gene_1262_tx_1 5 + 553225 555312 . 1 2088 0 -chrIV 553227 553793 LC_gene_1872_tx_1 1 - 553227 553793 . 1 567 0 -chrIV 553570 555312 HC_gene_1262_tx_2 2 + 553570 555312 . 1 1743 0 -chrIV 553782 555312 HC_gene_1262_tx_3 1 + 553782 555312 . 1 1531 0 -chrIV 554860 555312 HC_gene_1262_tx_4 4 + 554860 555312 . 1 453 0 -chrIV 555637 556203 HC_gene_1873_tx_1 2117 - 555637 556203 . 1 567 0 -chrIV 555637 556503 HC_gene_1873_tx_2 5597 - 555637 556503 . 1 867 0 -chrIV 556745 557096 HC_gene_1263_tx_1 4 + 556745 557096 . 1 352 0 -chrIV 556994 557508 HC_gene_1874_tx_1 5 - 556994 557508 . 1 515 0 -chrIV 556994 557561 HC_gene_1874_tx_2 11 - 556994 557561 . 1 568 0 -chrIV 556994 557757 HC_gene_1874_tx_3 3 - 556994 557757 . 1 764 0 -chrIV 556994 557814 HC_gene_1874_tx_4 10 - 556994 557814 . 1 821 0 -chrIV 556994 557934 HC_gene_1874_tx_5 9 - 556994 557934 . 1 941 0 -chrIV 556994 558107 HC_gene_1874_tx_6 80 - 556994 558107 . 1 1114 0 -chrIV 558268 558881 HC_gene_1875_tx_1 12 - 558268 558881 . 1 614 0 -chrIV 558268 559016 HC_gene_1875_tx_2 10 - 558268 559016 . 1 749 0 -chrIV 558268 559693 HC_gene_1875_tx_3 1 - 558268 559693 . 1 1426 0 -chrIV 558268 559693 HC_gene_1875_tx_4 1 - 558268 559693 . 2 988,338 0,1088 -chrIV 558268 560780 HC_gene_1875_tx_5 14 - 558268 560780 . 1 2513 0 -chrIV 558268 560780 HC_gene_1875_tx_6 1 - 558268 560780 . 2 1276,1110 0,1403 -chrIV 560718 561076 MC_gene_1264_tx_1 1 + 560718 561076 . 1 359 0 -chrIV 560952 561468 HC_gene_1876_tx_1 16 - 560952 561468 . 1 517 0 -chrIV 560952 561685 HC_gene_1876_tx_2 14 - 560952 561685 . 1 734 0 -chrIV 560952 561685 HC_gene_1876_tx_3 1 - 560952 561685 . 2 179,202 0,532 -chrIV 560952 561836 HC_gene_1876_tx_4 13 - 560952 561836 . 1 885 0 -chrIV 560952 562020 HC_gene_1876_tx_5 6 - 560952 562020 . 1 1069 0 -chrIV 560952 562020 HC_gene_1876_tx_6 1 - 560952 562020 . 2 454,213 0,856 -chrIV 560952 562464 HC_gene_1876_tx_9 52 - 560952 562464 . 1 1513 0 -chrIV 560952 562464 HC_gene_1876_tx_10 1 - 560952 562464 . 2 689,740 0,773 -chrIV 560952 562486 HC_gene_1876_tx_11 1 - 560952 562486 . 2 665,817 0,718 -chrIV 560952 562698 HC_gene_1876_tx_12 1 - 560952 562698 . 1 1747 0 -chrIV 561067 562464 HC_gene_1876_tx_13 1 - 561067 562464 . 1 1398 0 -chrIV 561070 561685 HC_gene_1876_tx_7 1 - 561070 561685 . 1 616 0 -chrIV 561074 562464 HC_gene_1876_tx_14 2 - 561074 562464 . 1 1391 0 -chrIV 561075 561685 HC_gene_1876_tx_8 1 - 561075 561685 . 1 611 0 -chrIV 561075 562464 HC_gene_1876_tx_15 2 - 561075 562464 . 1 1390 0 -chrIV 561077 562464 HC_gene_1876_tx_16 1 - 561077 562464 . 1 1388 0 -chrIV 563232 565021 HC_gene_1265_tx_1 3 + 563232 565021 . 1 1790 0 -chrIV 563465 565021 HC_gene_1265_tx_2 92 + 563465 565021 . 1 1557 0 -chrIV 563465 565021 HC_gene_1265_tx_3 1 + 563465 565021 . 2 1418,89 0,1468 -chrIV 563465 565021 HC_gene_1265_tx_4 1 + 563465 565021 . 2 486,893 0,664 -chrIV 563465 565021 HC_gene_1265_tx_5 1 + 563465 565021 . 2 84,1376 0,181 -chrIV 563465 565021 HC_gene_1265_tx_6 1 + 563465 565021 . 2 90,1324 0,233 -chrIV 563465 565021 HC_gene_1265_tx_7 1 + 563465 565021 . 2 992,374 0,1183 -chrIV 563692 565021 HC_gene_1265_tx_8 24 + 563692 565021 . 1 1330 0 -chrIV 563692 565021 HC_gene_1265_tx_9 1 + 563692 565021 . 2 256,927 0,403 -chrIV 563730 564168 MC_gene_1877_tx_1 1 - 563730 564168 . 1 439 0 -chrIV 563755 565021 HC_gene_1265_tx_10 19 + 563755 565021 . 1 1267 0 -chrIV 563885 565021 HC_gene_1265_tx_11 32 + 563885 565021 . 1 1137 0 -chrIV 563885 565021 HC_gene_1265_tx_12 1 + 563885 565021 . 2 223,599 0,538 -chrIV 564431 565021 HC_gene_1265_tx_13 24 + 564431 565021 . 1 591 0 -chrIV 564482 565021 HC_gene_1265_tx_14 2 + 564482 565021 . 1 540 0 -chrIV 564552 565021 HC_gene_1265_tx_15 35 + 564552 565021 . 1 470 0 -chrIV 564682 565021 HC_gene_1265_tx_16 29 + 564682 565021 . 1 340 0 -chrIV 564974 565266 HC_gene_1878_tx_1 22 - 564974 565266 . 1 293 0 -chrIV 564974 565556 HC_gene_1878_tx_2 75 - 564974 565556 . 1 583 0 -chrIV 564974 565699 HC_gene_1878_tx_3 210 - 564974 565699 . 1 726 0 -chrIV 565654 567368 LC_gene_1879_tx_1 1 - 565654 567368 . 1 1715 0 -chrIV 565878 567641 HC_gene_1266_tx_1 22 + 565878 567641 . 1 1764 0 -chrIV 566013 567743 HC_gene_1266_tx_2 1 + 566013 567743 . 1 1731 0 -chrIV 566120 567641 HC_gene_1266_tx_3 1 + 566120 567641 . 1 1522 0 -chrIV 566120 567743 HC_gene_1266_tx_4 1 + 566120 567743 . 1 1624 0 -chrIV 567546 568736 MC_gene_1880_tx_1 1 - 567546 568736 . 1 1191 0 -chrIV 567571 568264 MC_gene_1880_tx_2 1 - 567571 568264 . 1 694 0 -chrIV 567657 568749 MC_gene_1267_tx_1 1 + 567657 568749 . 1 1093 0 -chrIV 569129 569597 HC_gene_1881_tx_1 8 - 569129 569597 . 1 469 0 -chrIV 569129 569790 HC_gene_1881_tx_3 38 - 569129 569790 . 2 503,67 0,595 -chrIV 569129 569790 HC_gene_1881_tx_4 17 - 569129 569790 . 2 505,67 0,595 -chrIV 569129 569790 HC_gene_1881_tx_5 12 - 569129 569790 . 1 662 0 -chrIV 569129 569790 HC_gene_1881_tx_6 1 - 569129 569790 . 2 499,67 0,595 -chrIV 569129 569790 HC_gene_1881_tx_7 1 - 569129 569790 . 2 509,54 0,608 -chrIV 569220 569597 HC_gene_1881_tx_2 1 - 569220 569597 . 1 378 0 -chrIV 569220 569790 HC_gene_1881_tx_8 3 - 569220 569790 . 2 412,67 0,504 -chrIV 569220 569790 HC_gene_1881_tx_9 1 - 569220 569790 . 2 414,67 0,504 -chrIV 570059 570434 HC_gene_1268_tx_1 1 + 570059 570434 . 1 376 0 -chrIV 570059 570630 HC_gene_1268_tx_2 5 + 570059 570630 . 1 572 0 -chrIV 570566 572198 HC_gene_1269_tx_1 1 + 570566 572198 . 1 1633 0 -chrIV 571168 572198 HC_gene_1269_tx_2 1 + 571168 572198 . 1 1031 0 -chrIV 572254 572616 HC_gene_1270_tx_1 1 + 572254 572616 . 1 363 0 -chrIV 572800 573773 HC_gene_1271_tx_1 1 + 572800 573773 . 1 974 0 -chrIV 572800 573777 HC_gene_1271_tx_2 1 + 572800 573777 . 1 978 0 -chrIV 572800 573786 HC_gene_1271_tx_3 1 + 572800 573786 . 3 117,179,454 0,166,533 -chrIV 572800 573788 HC_gene_1271_tx_4 1 + 572800 573788 . 1 989 0 -chrIV 572800 573789 HC_gene_1271_tx_5 1 + 572800 573789 . 1 990 0 -chrIV 572800 573795 HC_gene_1271_tx_6 2 + 572800 573795 . 1 996 0 -chrIV 572800 573796 HC_gene_1271_tx_7 1 + 572800 573796 . 1 997 0 -chrIV 572800 573799 HC_gene_1271_tx_8 3 + 572800 573799 . 1 1000 0 -chrIV 572800 573800 HC_gene_1271_tx_9 1 + 572800 573800 . 1 1001 0 -chrIV 572800 573813 HC_gene_1271_tx_10 1 + 572800 573813 . 1 1014 0 -chrIV 572800 574139 HC_gene_1271_tx_11 2 + 572800 574139 . 1 1340 0 -chrIV 573052 573771 HC_gene_1271_tx_13 1 + 573052 573771 . 1 720 0 -chrIV 573052 573773 HC_gene_1271_tx_14 1 + 573052 573773 . 1 722 0 -chrIV 573052 573779 HC_gene_1271_tx_15 1 + 573052 573779 . 1 728 0 -chrIV 573052 573794 HC_gene_1271_tx_16 1 + 573052 573794 . 1 743 0 -chrIV 573052 573795 HC_gene_1271_tx_17 1 + 573052 573795 . 1 744 0 -chrIV 573052 573811 HC_gene_1271_tx_18 1 + 573052 573811 . 1 760 0 -chrIV 573052 573817 HC_gene_1271_tx_19 4 + 573052 573817 . 1 766 0 -chrIV 573052 574139 HC_gene_1271_tx_12 7 + 573052 574139 . 1 1088 0 -chrIV 573289 573779 HC_gene_1271_tx_20 3 + 573289 573779 . 1 491 0 -chrIV 573289 573786 HC_gene_1271_tx_21 2 + 573289 573786 . 1 498 0 -chrIV 573289 573795 HC_gene_1271_tx_22 1 + 573289 573795 . 1 507 0 -chrIV 573289 573799 HC_gene_1271_tx_23 4 + 573289 573799 . 1 511 0 -chrIV 573289 573800 HC_gene_1271_tx_24 1 + 573289 573800 . 1 512 0 -chrIV 573289 573811 HC_gene_1271_tx_25 1 + 573289 573811 . 1 523 0 -chrIV 573289 573812 HC_gene_1271_tx_26 1 + 573289 573812 . 1 524 0 -chrIV 573289 573816 HC_gene_1271_tx_27 1 + 573289 573816 . 1 528 0 -chrIV 573289 573817 HC_gene_1271_tx_28 2 + 573289 573817 . 1 529 0 -chrIV 573289 574139 HC_gene_1271_tx_44 3 + 573289 574139 . 1 851 0 -chrIV 573356 573779 HC_gene_1271_tx_29 1 + 573356 573779 . 1 424 0 -chrIV 573409 573779 HC_gene_1271_tx_30 1 + 573409 573779 . 1 371 0 -chrIV 573409 573786 HC_gene_1271_tx_31 1 + 573409 573786 . 1 378 0 -chrIV 573409 573795 HC_gene_1271_tx_32 1 + 573409 573795 . 1 387 0 -chrIV 573409 573796 HC_gene_1271_tx_33 2 + 573409 573796 . 1 388 0 -chrIV 573409 573799 HC_gene_1271_tx_34 1 + 573409 573799 . 1 391 0 -chrIV 573409 573800 HC_gene_1271_tx_35 1 + 573409 573800 . 1 392 0 -chrIV 573409 573811 HC_gene_1271_tx_36 1 + 573409 573811 . 1 403 0 -chrIV 573409 574139 HC_gene_1271_tx_45 5 + 573409 574139 . 1 731 0 -chrIV 573485 573788 HC_gene_1271_tx_37 1 + 573485 573788 . 1 304 0 -chrIV 573485 573799 HC_gene_1271_tx_38 8 + 573485 573799 . 1 315 0 -chrIV 573485 573800 HC_gene_1271_tx_39 1 + 573485 573800 . 1 316 0 -chrIV 573485 573811 HC_gene_1271_tx_40 1 + 573485 573811 . 1 327 0 -chrIV 573485 573817 HC_gene_1271_tx_41 4 + 573485 573817 . 1 333 0 -chrIV 573485 573818 HC_gene_1271_tx_42 1 + 573485 573818 . 1 334 0 -chrIV 573485 573856 HC_gene_1271_tx_43 1 + 573485 573856 . 1 372 0 -chrIV 573485 574139 HC_gene_1271_tx_46 3 + 573485 574139 . 1 655 0 -chrIV 574146 575594 HC_gene_1272_tx_1 1 + 574146 575594 . 1 1449 0 -chrIV 574146 575597 HC_gene_1272_tx_2 1 + 574146 575597 . 1 1452 0 -chrIV 574146 575920 HC_gene_1272_tx_3 15 + 574146 575920 . 1 1775 0 -chrIV 574146 575920 HC_gene_1272_tx_4 1 + 574146 575920 . 3 273,166,1174 0,375,601 -chrIV 574433 575615 HC_gene_1272_tx_6 1 + 574433 575615 . 1 1183 0 -chrIV 574433 575920 HC_gene_1272_tx_5 5 + 574433 575920 . 1 1488 0 -chrIV 574991 575820 HC_gene_1882_tx_1 2 - 574991 575820 . 1 830 0 -chrIV 575253 575920 HC_gene_1272_tx_7 7 + 575253 575920 . 1 668 0 -chrIV 576095 577016 HC_gene_1273_tx_1 2 + 576095 577016 . 1 922 0 -chrIV 576095 578448 HC_gene_1273_tx_3 46 + 576095 578448 . 1 2354 0 -chrIV 576095 578448 HC_gene_1273_tx_4 1 + 576095 578448 . 3 283,197,687 0,473,1667 -chrIV 576127 578632 HC_gene_1273_tx_5 1 + 576127 578632 . 1 2506 0 -chrIV 576167 577016 HC_gene_1273_tx_2 1 + 576167 577016 . 1 850 0 -chrIV 576271 578448 HC_gene_1273_tx_6 4 + 576271 578448 . 1 2178 0 -chrIV 576278 578087 LC_gene_1883_tx_1 1 - 576278 578087 . 1 1810 0 -chrIV 576473 578448 HC_gene_1273_tx_7 12 + 576473 578448 . 1 1976 0 -chrIV 576473 578577 HC_gene_1273_tx_8 1 + 576473 578577 . 1 2105 0 -chrIV 576578 578448 HC_gene_1273_tx_9 5 + 576578 578448 . 1 1871 0 -chrIV 576766 578448 HC_gene_1273_tx_10 9 + 576766 578448 . 1 1683 0 -chrIV 576766 578448 HC_gene_1273_tx_11 1 + 576766 578448 . 2 441,552 0,1131 -chrIV 576766 578577 HC_gene_1273_tx_12 1 + 576766 578577 . 1 1812 0 -chrIV 576991 578448 HC_gene_1273_tx_13 4 + 576991 578448 . 1 1458 0 -chrIV 577119 578448 HC_gene_1273_tx_14 14 + 577119 578448 . 1 1330 0 -chrIV 577119 579183 HC_gene_1273_tx_17 1 + 577119 579183 . 1 2065 0 -chrIV 577242 578448 HC_gene_1273_tx_15 1 + 577242 578448 . 1 1207 0 -chrIV 577294 578448 HC_gene_1273_tx_16 9 + 577294 578448 . 1 1155 0 -chrIV 577294 579183 HC_gene_1273_tx_18 1 + 577294 579183 . 1 1890 0 -chrIV 577590 578448 HC_gene_1273_tx_19 14 + 577590 578448 . 1 859 0 -chrIV 577827 578448 HC_gene_1273_tx_20 18 + 577827 578448 . 1 622 0 -chrIV 577903 578448 HC_gene_1273_tx_21 14 + 577903 578448 . 1 546 0 -chrIV 577903 579183 HC_gene_1273_tx_22 1 + 577903 579183 . 1 1281 0 -chrIV 578184 578448 HC_gene_1273_tx_23 5 + 578184 578448 . 1 265 0 -chrIV 578184 578577 HC_gene_1273_tx_24 1 + 578184 578577 . 1 394 0 -chrIV 578326 579116 HC_gene_1884_tx_1 1 - 578326 579116 . 1 791 0 -chrIV 578594 579183 HC_gene_1273_tx_25 137 + 578594 579183 . 1 590 0 -chrIV 579424 580533 HC_gene_1274_tx_1 36 + 579424 580533 . 2 50,516 0,594 -chrIV 579424 580533 HC_gene_1274_tx_2 1010 + 579424 580533 . 2 55,516 0,594 -chrIV 579424 580533 HC_gene_1274_tx_3 254 + 579424 580533 . 1 1110 0 -chrIV 580127 580533 HC_gene_1274_tx_4 2707 + 580127 580533 . 1 407 0 -chrIV 580231 580533 HC_gene_1274_tx_5 200 + 580231 580533 . 1 303 0 -chrIV 580641 582017 HC_gene_1275_tx_1 1 + 580641 582017 . 1 1377 0 -chrIV 580641 582177 HC_gene_1275_tx_2 1 + 580641 582177 . 1 1537 0 -chrIV 580641 582184 HC_gene_1275_tx_3 1 + 580641 582184 . 1 1544 0 -chrIV 580641 582197 HC_gene_1275_tx_4 1 + 580641 582197 . 1 1557 0 -chrIV 580641 582202 HC_gene_1275_tx_5 1 + 580641 582202 . 1 1562 0 -chrIV 580641 582232 HC_gene_1275_tx_6 1 + 580641 582232 . 2 1468,88 0,1504 -chrIV 580641 582372 HC_gene_1275_tx_7 3 + 580641 582372 . 1 1732 0 -chrIV 580641 582578 HC_gene_1275_tx_8 4 + 580641 582578 . 1 1938 0 -chrIV 580641 582578 HC_gene_1275_tx_9 1 + 580641 582578 . 2 415,1369 0,569 -chrIV 580749 582163 HC_gene_1275_tx_10 1 + 580749 582163 . 1 1415 0 -chrIV 581794 582640 HC_gene_1885_tx_1 14 - 581794 582640 . 1 847 0 -chrIV 581879 582640 HC_gene_1885_tx_2 7 - 581879 582640 . 1 762 0 -chrIV 582737 583329 HC_gene_1886_tx_1 12 - 582737 583329 . 1 593 0 -chrIV 582737 583528 HC_gene_1886_tx_2 55 - 582737 583528 . 1 792 0 -chrIV 582945 583574 MC_gene_1276_tx_1 1 + 582945 583574 . 1 630 0 -chrIV 583672 584739 HC_gene_1277_tx_1 75 + 583672 584739 . 1 1068 0 -chrIV 583672 584739 HC_gene_1277_tx_2 1 + 583672 584739 . 2 245,765 0,303 -chrIV 583672 584739 HC_gene_1277_tx_3 1 + 583672 584739 . 2 329,422 0,646 -chrIV 583672 584739 HC_gene_1277_tx_4 1 + 583672 584739 . 2 157,633 0,435 -chrIV 584024 584739 HC_gene_1277_tx_5 11 + 584024 584739 . 1 716 0 -chrIV 584163 584739 HC_gene_1277_tx_6 18 + 584163 584739 . 1 577 0 -chrIV 584298 584739 HC_gene_1277_tx_7 27 + 584298 584739 . 1 442 0 -chrIV 584298 585055 HC_gene_1277_tx_8 1 + 584298 585055 . 1 758 0 -chrIV 584633 586586 HC_gene_1887_tx_1 2 - 584633 586586 . 1 1954 0 -chrIV 584633 586668 HC_gene_1887_tx_2 1 - 584633 586668 . 1 2036 0 -chrIV 584633 587171 HC_gene_1887_tx_3 1 - 584633 587171 . 1 2539 0 -chrIV 584633 587783 HC_gene_1887_tx_4 3 - 584633 587783 . 1 3151 0 -chrIV 584790 587783 HC_gene_1887_tx_5 2 - 584790 587783 . 1 2994 0 -chrIV 585622 586478 MC_gene_1278_tx_1 1 + 585622 586478 . 1 857 0 -chrIV 587944 588440 MC_gene_1888_tx_1 1 - 587944 588440 . 1 497 0 -chrIV 587948 588558 MC_gene_1888_tx_2 1 - 587948 588558 . 1 611 0 -chrIV 588009 588864 HC_gene_1279_tx_1 1 + 588009 588864 . 1 856 0 -chrIV 588715 589209 HC_gene_1889_tx_1 55 - 588715 589209 . 1 495 0 -chrIV 588715 589284 HC_gene_1889_tx_2 21 - 588715 589284 . 1 570 0 -chrIV 588715 589470 HC_gene_1889_tx_3 414 - 588715 589470 . 1 756 0 -chrIV 589686 590557 HC_gene_1890_tx_1 30 - 589686 590557 . 1 872 0 -chrIV 589686 590653 HC_gene_1890_tx_2 25 - 589686 590653 . 1 968 0 -chrIV 589686 590793 HC_gene_1890_tx_3 49 - 589686 590793 . 1 1108 0 -chrIV 589686 590793 HC_gene_1890_tx_4 1 - 589686 590793 . 2 448,488 0,620 -chrIV 589686 591125 HC_gene_1890_tx_5 24 - 589686 591125 . 1 1440 0 -chrIV 589686 591471 HC_gene_1890_tx_6 155 - 589686 591471 . 1 1786 0 -chrIV 589686 591471 HC_gene_1890_tx_7 1 - 589686 591471 . 2 1160,471 0,1315 -chrIV 589686 591471 HC_gene_1890_tx_8 1 - 589686 591471 . 2 478,1196 0,590 -chrIV 589686 591471 HC_gene_1890_tx_9 1 - 589686 591471 . 2 448,1237 0,549 -chrIV 589686 591471 HC_gene_1890_tx_10 1 - 589686 591471 . 2 460,1142 0,644 -chrIV 589686 591471 HC_gene_1890_tx_11 1 - 589686 591471 . 2 1188,289 0,1497 -chrIV 589686 591471 HC_gene_1890_tx_12 1 - 589686 591471 . 2 621,422 0,1364 -chrIV 589686 591471 HC_gene_1890_tx_13 1 - 589686 591471 . 2 1006,505 0,1281 -chrIV 589686 591471 HC_gene_1890_tx_14 1 - 589686 591471 . 2 1420,274 0,1512 -chrIV 589686 591471 HC_gene_1890_tx_15 1 - 589686 591471 . 2 1114,238 0,1548 -chrIV 589770 590069 MC_gene_1280_tx_1 1 + 589770 590069 . 1 300 0 -chrIV 590821 591471 HC_gene_1890_tx_16 4 - 590821 591471 . 1 651 0 -chrIV 590942 591471 HC_gene_1890_tx_17 1 - 590942 591471 . 1 530 0 -chrIV 590945 591471 HC_gene_1890_tx_18 1 - 590945 591471 . 1 527 0 -chrIV 590946 591471 HC_gene_1890_tx_19 2 - 590946 591471 . 1 526 0 -chrIV 590947 591471 HC_gene_1890_tx_20 2 - 590947 591471 . 1 525 0 -chrIV 590956 591471 HC_gene_1890_tx_21 1 - 590956 591471 . 1 516 0 -chrIV 590959 591471 HC_gene_1890_tx_22 2 - 590959 591471 . 1 513 0 -chrIV 590961 591471 HC_gene_1890_tx_23 1 - 590961 591471 . 1 511 0 -chrIV 590964 591471 HC_gene_1890_tx_24 3 - 590964 591471 . 1 508 0 -chrIV 590966 591471 HC_gene_1890_tx_25 1 - 590966 591471 . 1 506 0 -chrIV 590968 591471 HC_gene_1890_tx_26 5 - 590968 591471 . 1 504 0 -chrIV 591011 591585 HC_gene_1281_tx_1 1 + 591011 591585 . 1 575 0 -chrIV 591630 592128 HC_gene_1282_tx_1 2 + 591630 592128 . 1 499 0 -chrIV 592362 592748 HC_gene_1283_tx_1 3 + 592362 592748 . 1 387 0 -chrIV 592362 592749 HC_gene_1283_tx_2 1 + 592362 592749 . 1 388 0 -chrIV 592362 592750 HC_gene_1283_tx_3 1 + 592362 592750 . 1 389 0 -chrIV 592362 592751 HC_gene_1283_tx_4 2 + 592362 592751 . 1 390 0 -chrIV 592362 592753 HC_gene_1283_tx_5 2 + 592362 592753 . 1 392 0 -chrIV 592362 592754 HC_gene_1283_tx_6 3 + 592362 592754 . 1 393 0 -chrIV 592362 592755 HC_gene_1283_tx_7 4 + 592362 592755 . 1 394 0 -chrIV 592362 592756 HC_gene_1283_tx_8 9 + 592362 592756 . 1 395 0 -chrIV 592362 592758 HC_gene_1283_tx_9 2 + 592362 592758 . 1 397 0 -chrIV 592362 592761 HC_gene_1283_tx_10 1 + 592362 592761 . 1 400 0 -chrIV 592362 592762 HC_gene_1283_tx_11 9 + 592362 592762 . 1 401 0 -chrIV 592362 592763 HC_gene_1283_tx_12 2 + 592362 592763 . 1 402 0 -chrIV 592362 592766 HC_gene_1283_tx_13 1 + 592362 592766 . 1 405 0 -chrIV 592362 592770 HC_gene_1283_tx_14 3 + 592362 592770 . 1 409 0 -chrIV 592362 592781 HC_gene_1283_tx_15 2 + 592362 592781 . 1 420 0 -chrIV 592362 592783 HC_gene_1283_tx_16 1 + 592362 592783 . 1 422 0 -chrIV 592362 592784 HC_gene_1283_tx_17 1 + 592362 592784 . 1 423 0 -chrIV 592362 592786 HC_gene_1283_tx_18 1 + 592362 592786 . 1 425 0 -chrIV 592362 592790 HC_gene_1283_tx_19 1 + 592362 592790 . 1 429 0 -chrIV 592362 592797 HC_gene_1283_tx_20 1 + 592362 592797 . 1 436 0 -chrIV 592362 592799 HC_gene_1283_tx_21 1 + 592362 592799 . 1 438 0 -chrIV 592362 593232 HC_gene_1283_tx_22 84 + 592362 593232 . 1 871 0 -chrIV 592453 592754 HC_gene_1283_tx_25 1 + 592453 592754 . 1 302 0 -chrIV 592453 592756 HC_gene_1283_tx_26 1 + 592453 592756 . 1 304 0 -chrIV 592453 593232 HC_gene_1283_tx_23 20 + 592453 593232 . 1 780 0 -chrIV 592588 592748 HC_gene_1283_tx_27 1 + 592588 592748 . 1 161 0 -chrIV 592588 592761 HC_gene_1283_tx_28 1 + 592588 592761 . 1 174 0 -chrIV 592588 593232 HC_gene_1283_tx_24 16 + 592588 593232 . 1 645 0 -chrIV 592595 592902 HC_gene_1891_tx_1 1 - 592595 592902 . 1 308 0 -chrIV 592595 592912 HC_gene_1891_tx_2 1 - 592595 592912 . 1 318 0 -chrIV 592595 592914 HC_gene_1891_tx_3 15 - 592595 592914 . 1 320 0 -chrIV 592595 593047 HC_gene_1891_tx_4 2 - 592595 593047 . 1 453 0 -chrIV 593107 593470 HC_gene_1892_tx_1 7 - 593107 593470 . 1 364 0 -chrIV 593110 593470 HC_gene_1892_tx_2 1 - 593110 593470 . 1 361 0 -chrIV 593112 593470 HC_gene_1892_tx_3 2 - 593112 593470 . 1 359 0 -chrIV 593113 593470 HC_gene_1892_tx_4 3 - 593113 593470 . 1 358 0 -chrIV 593114 593470 HC_gene_1892_tx_5 1 - 593114 593470 . 1 357 0 -chrIV 593117 593470 HC_gene_1892_tx_6 8 - 593117 593470 . 1 354 0 -chrIV 593118 593470 HC_gene_1892_tx_7 1 - 593118 593470 . 1 353 0 -chrIV 593119 593470 HC_gene_1892_tx_8 1 - 593119 593470 . 1 352 0 -chrIV 593120 593470 HC_gene_1892_tx_9 2 - 593120 593470 . 1 351 0 -chrIV 593121 593470 HC_gene_1892_tx_10 1 - 593121 593470 . 1 350 0 -chrIV 593122 593470 HC_gene_1892_tx_11 4 - 593122 593470 . 1 349 0 -chrIV 593123 593470 HC_gene_1892_tx_12 4 - 593123 593470 . 1 348 0 -chrIV 593125 593470 HC_gene_1892_tx_13 2 - 593125 593470 . 1 346 0 -chrIV 593126 593276 HC_gene_1892_tx_21 1 - 593126 593276 . 1 151 0 -chrIV 593126 593470 HC_gene_1892_tx_14 2 - 593126 593470 . 1 345 0 -chrIV 593127 593470 HC_gene_1892_tx_15 1 - 593127 593470 . 1 344 0 -chrIV 593136 593470 HC_gene_1892_tx_16 1 - 593136 593470 . 1 335 0 -chrIV 593139 593470 HC_gene_1892_tx_17 1 - 593139 593470 . 1 332 0 -chrIV 593153 593470 HC_gene_1892_tx_18 1 - 593153 593470 . 1 318 0 -chrIV 593160 593470 HC_gene_1892_tx_19 1 - 593160 593470 . 1 311 0 -chrIV 593168 593470 HC_gene_1892_tx_20 1 - 593168 593470 . 1 303 0 -chrIV 593687 596861 HC_gene_1284_tx_1 1 + 593687 596861 . 2 2430,579 0,2596 -chrIV 593687 596861 HC_gene_1284_tx_2 7 + 593687 596861 . 1 3175 0 -chrIV 593687 596861 HC_gene_1284_tx_3 1 + 593687 596861 . 3 261,1482,1279 0,333,1896 -chrIV 593687 596861 HC_gene_1284_tx_4 1 + 593687 596861 . 2 967,1374 0,1801 -chrIV 593799 596861 HC_gene_1284_tx_5 21 + 593799 596861 . 1 3063 0 -chrIV 593799 596861 HC_gene_1284_tx_6 1 + 593799 596861 . 2 1772,1170 0,1893 -chrIV 593799 596861 HC_gene_1284_tx_7 1 + 593799 596861 . 2 1816,1170 0,1893 -chrIV 593799 596861 HC_gene_1284_tx_8 1 + 593799 596861 . 2 953,2062 0,1001 -chrIV 593981 596861 HC_gene_1284_tx_9 16 + 593981 596861 . 1 2881 0 -chrIV 594482 596861 HC_gene_1284_tx_10 6 + 594482 596861 . 1 2380 0 -chrIV 594823 596861 HC_gene_1284_tx_11 9 + 594823 596861 . 1 2039 0 -chrIV 594950 596861 HC_gene_1284_tx_12 9 + 594950 596861 . 1 1912 0 -chrIV 595390 596861 HC_gene_1284_tx_13 9 + 595390 596861 . 1 1472 0 -chrIV 595799 596861 HC_gene_1284_tx_14 4 + 595799 596861 . 1 1063 0 -chrIV 595832 596775 LC_gene_1893_tx_1 1 - 595832 596775 . 1 944 0 -chrIV 596983 598246 HC_gene_1285_tx_1 52 + 596983 598246 . 1 1264 0 -chrIV 596983 598480 HC_gene_1285_tx_2 1 + 596983 598480 . 1 1498 0 -chrIV 598402 599603 HC_gene_1894_tx_1 2 - 598402 599603 . 1 1202 0 -chrIV 598412 598972 HC_gene_1286_tx_1 7 + 598412 598972 . 1 561 0 -chrIV 598669 599603 HC_gene_1894_tx_2 1 - 598669 599603 . 1 935 0 -chrIV 598862 599603 HC_gene_1894_tx_3 1 - 598862 599603 . 1 742 0 -chrIV 600319 601018 MC_gene_1895_tx_1 1 - 600319 601018 . 1 700 0 -chrIV 600522 602138 HC_gene_1287_tx_1 5 + 600522 602138 . 1 1617 0 -chrIV 600753 602138 HC_gene_1287_tx_2 1 + 600753 602138 . 1 1386 0 -chrIV 600754 602138 HC_gene_1287_tx_3 1 + 600754 602138 . 1 1385 0 -chrIV 600755 601858 HC_gene_1287_tx_221 1 + 600755 601858 . 1 1104 0 -chrIV 600761 601858 HC_gene_1287_tx_222 61 + 600761 601858 . 1 1098 0 -chrIV 600761 601858 HC_gene_1287_tx_223 1 + 600761 601858 . 2 193,509 0,589 -chrIV 600761 601858 HC_gene_1287_tx_224 1 + 600761 601858 . 2 443,252 0,846 -chrIV 600761 602138 HC_gene_1287_tx_4 5450 + 600761 602138 . 1 1378 0 -chrIV 600761 602138 HC_gene_1287_tx_5 1 + 600761 602138 . 2 38,750 0,628 -chrIV 600761 602138 HC_gene_1287_tx_6 1 + 600761 602138 . 2 105,1230 0,148 -chrIV 600761 602138 HC_gene_1287_tx_7 2 + 600761 602138 . 2 78,1230 0,148 -chrIV 600761 602138 HC_gene_1287_tx_8 2 + 600761 602138 . 2 99,1189 0,189 -chrIV 600761 602138 HC_gene_1287_tx_9 1 + 600761 602138 . 2 34,819 0,559 -chrIV 600761 602138 HC_gene_1287_tx_10 1 + 600761 602138 . 2 328,652 0,726 -chrIV 600761 602138 HC_gene_1287_tx_11 1 + 600761 602138 . 2 633,668 0,710 -chrIV 600761 602138 HC_gene_1287_tx_12 1 + 600761 602138 . 2 303,711 0,667 -chrIV 600761 602138 HC_gene_1287_tx_13 1 + 600761 602138 . 2 57,1230 0,148 -chrIV 600761 602138 HC_gene_1287_tx_14 1 + 600761 602138 . 2 294,969 0,409 -chrIV 600761 602138 HC_gene_1287_tx_15 1 + 600761 602138 . 2 153,1167 0,211 -chrIV 600761 602138 HC_gene_1287_tx_16 1 + 600761 602138 . 2 1241,79 0,1299 -chrIV 600761 602138 HC_gene_1287_tx_17 1 + 600761 602138 . 2 516,675 0,703 -chrIV 600761 602138 HC_gene_1287_tx_18 1 + 600761 602138 . 2 78,812 0,566 -chrIV 600761 602138 HC_gene_1287_tx_19 4 + 600761 602138 . 2 75,1206 0,172 -chrIV 600761 602138 HC_gene_1287_tx_20 1 + 600761 602138 . 2 75,1260 0,118 -chrIV 600761 602138 HC_gene_1287_tx_21 1 + 600761 602138 . 2 78,633 0,745 -chrIV 600761 602138 HC_gene_1287_tx_22 1 + 600761 602138 . 2 276,993 0,385 -chrIV 600761 602138 HC_gene_1287_tx_23 1 + 600761 602138 . 2 252,954 0,424 -chrIV 600761 602138 HC_gene_1287_tx_24 1 + 600761 602138 . 2 78,585 0,793 -chrIV 600761 602138 HC_gene_1287_tx_25 1 + 600761 602138 . 2 54,909 0,469 -chrIV 600761 602138 HC_gene_1287_tx_26 1 + 600761 602138 . 2 99,1165 0,213 -chrIV 600761 602138 HC_gene_1287_tx_27 1 + 600761 602138 . 2 213,846 0,532 -chrIV 600761 602138 HC_gene_1287_tx_28 1 + 600761 602138 . 2 49,972 0,406 -chrIV 600761 602138 HC_gene_1287_tx_29 1 + 600761 602138 . 2 34,849 0,529 -chrIV 600761 602138 HC_gene_1287_tx_30 1 + 600761 602138 . 2 50,1275 0,103 -chrIV 600761 602138 HC_gene_1287_tx_31 1 + 600761 602138 . 2 289,762 0,616 -chrIV 600761 602138 HC_gene_1287_tx_32 1 + 600761 602138 . 2 153,1059 0,319 -chrIV 600761 602138 HC_gene_1287_tx_33 1 + 600761 602138 . 2 105,1155 0,223 -chrIV 600761 602138 HC_gene_1287_tx_34 1 + 600761 602138 . 2 177,738 0,640 -chrIV 600761 602138 HC_gene_1287_tx_35 1 + 600761 602138 . 2 57,1206 0,172 -chrIV 600761 602138 HC_gene_1287_tx_36 1 + 600761 602138 . 2 303,768 0,610 -chrIV 600761 602138 HC_gene_1287_tx_37 1 + 600761 602138 . 2 38,972 0,406 -chrIV 600761 602138 HC_gene_1287_tx_38 1 + 600761 602138 . 2 192,1101 0,277 -chrIV 600761 602138 HC_gene_1287_tx_39 1 + 600761 602138 . 2 251,702 0,676 -chrIV 600761 602138 HC_gene_1287_tx_40 1 + 600761 602138 . 2 75,969 0,409 -chrIV 600761 602138 HC_gene_1287_tx_41 1 + 600761 602138 . 2 75,1173 0,205 -chrIV 600761 602138 HC_gene_1287_tx_42 1 + 600761 602138 . 2 111,1128 0,250 -chrIV 600761 602138 HC_gene_1287_tx_43 1 + 600761 602138 . 2 75,1128 0,250 -chrIV 600761 602138 HC_gene_1287_tx_44 1 + 600761 602138 . 2 38,819 0,559 -chrIV 600761 602138 HC_gene_1287_tx_45 1 + 600761 602138 . 2 441,679 0,699 -chrIV 600761 602138 HC_gene_1287_tx_46 1 + 600761 602138 . 2 105,1059 0,319 -chrIV 600761 602138 HC_gene_1287_tx_47 1 + 600761 602138 . 2 226,812 0,566 -chrIV 600761 602138 HC_gene_1287_tx_48 1 + 600761 602138 . 2 54,585 0,793 -chrIV 600761 602138 HC_gene_1287_tx_49 1 + 600761 602138 . 2 213,1107 0,271 -chrIV 600761 602138 HC_gene_1287_tx_50 1 + 600761 602138 . 2 49,993 0,385 -chrIV 600761 602138 HC_gene_1287_tx_51 1 + 600761 602138 . 2 87,762 0,616 -chrIV 600761 602138 HC_gene_1287_tx_52 1 + 600761 602138 . 2 105,1159 0,219 -chrIV 600761 602138 HC_gene_1287_tx_53 1 + 600761 602138 . 2 639,528 0,850 -chrIV 600761 602138 HC_gene_1287_tx_54 1 + 600761 602138 . 2 293,558 0,820 -chrIV 600761 602138 HC_gene_1287_tx_55 1 + 600761 602138 . 2 303,933 0,445 -chrIV 600761 602138 HC_gene_1287_tx_56 1 + 600761 602138 . 2 45,1251 0,127 -chrIV 600761 602138 HC_gene_1287_tx_57 1 + 600761 602138 . 2 133,1128 0,250 -chrIV 600761 602138 HC_gene_1287_tx_58 1 + 600761 602138 . 2 54,486 0,892 -chrIV 600761 602138 HC_gene_1287_tx_59 1 + 600761 602138 . 2 43,617 0,761 -chrIV 600761 602138 HC_gene_1287_tx_60 1 + 600761 602138 . 2 43,925 0,453 -chrIV 600761 602138 HC_gene_1287_tx_61 1 + 600761 602138 . 2 325,528 0,850 -chrIV 600761 602138 HC_gene_1287_tx_62 1 + 600761 602138 . 2 63,750 0,628 -chrIV 600761 602138 HC_gene_1287_tx_63 1 + 600761 602138 . 2 504,816 0,562 -chrIV 600761 602138 HC_gene_1287_tx_64 1 + 600761 602138 . 2 405,846 0,532 -chrIV 600761 602138 HC_gene_1287_tx_65 1 + 600761 602138 . 2 447,851 0,527 -chrIV 600761 602138 HC_gene_1287_tx_66 1 + 600761 602138 . 2 402,909 0,469 -chrIV 600761 602138 HC_gene_1287_tx_67 1 + 600761 602138 . 3 153,599,474 0,229,904 -chrIV 600761 602138 HC_gene_1287_tx_68 1 + 600761 602138 . 2 247,558 0,820 -chrIV 600761 602138 HC_gene_1287_tx_69 1 + 600761 602138 . 2 291,916 0,462 -chrIV 600761 602138 HC_gene_1287_tx_70 1 + 600761 602138 . 2 289,528 0,850 -chrIV 600761 602138 HC_gene_1287_tx_71 1 + 600761 602138 . 2 804,472 0,906 -chrIV 600761 602138 HC_gene_1287_tx_72 1 + 600761 602138 . 2 402,851 0,527 -chrIV 600761 602138 HC_gene_1287_tx_73 1 + 600761 602138 . 2 75,1159 0,219 -chrIV 600761 602138 HC_gene_1287_tx_74 1 + 600761 602138 . 2 265,684 0,694 -chrIV 600761 602138 HC_gene_1287_tx_75 1 + 600761 602138 . 2 75,1251 0,127 -chrIV 600761 602138 HC_gene_1287_tx_76 1 + 600761 602138 . 2 278,528 0,850 -chrIV 600761 602138 HC_gene_1287_tx_77 1 + 600761 602138 . 2 240,819 0,559 -chrIV 600761 602138 HC_gene_1287_tx_78 1 + 600761 602138 . 2 293,675 0,703 -chrIV 600761 602138 HC_gene_1287_tx_79 1 + 600761 602138 . 2 63,702 0,676 -chrIV 600761 602138 HC_gene_1287_tx_80 1 + 600761 602138 . 2 161,609 0,769 -chrIV 600761 602138 HC_gene_1287_tx_81 1 + 600761 602138 . 2 87,954 0,424 -chrIV 600761 602138 HC_gene_1287_tx_82 2 + 600761 602138 . 2 75,1230 0,148 -chrIV 600761 602138 HC_gene_1287_tx_83 1 + 600761 602138 . 2 285,738 0,640 -chrIV 600761 602138 HC_gene_1287_tx_84 1 + 600761 602138 . 2 247,570 0,808 -chrIV 600761 602138 HC_gene_1287_tx_85 1 + 600761 602138 . 2 291,617 0,761 -chrIV 600761 602138 HC_gene_1287_tx_86 1 + 600761 602138 . 2 54,930 0,448 -chrIV 600761 602138 HC_gene_1287_tx_87 1 + 600761 602138 . 2 786,513 0,865 -chrIV 600761 602138 HC_gene_1287_tx_88 1 + 600761 602138 . 2 105,1101 0,277 -chrIV 600761 602138 HC_gene_1287_tx_89 2 + 600761 602138 . 2 105,993 0,385 -chrIV 600761 602138 HC_gene_1287_tx_90 1 + 600761 602138 . 2 165,1086 0,292 -chrIV 600761 602138 HC_gene_1287_tx_91 1 + 600761 602138 . 2 405,869 0,509 -chrIV 600761 602138 HC_gene_1287_tx_92 1 + 600761 602138 . 2 63,1038 0,340 -chrIV 600761 602138 HC_gene_1287_tx_93 1 + 600761 602138 . 2 291,842 0,536 -chrIV 600761 602138 HC_gene_1287_tx_94 1 + 600761 602138 . 2 100,723 0,655 -chrIV 600761 602138 HC_gene_1287_tx_95 1 + 600761 602138 . 2 523,738 0,640 -chrIV 600761 602138 HC_gene_1287_tx_96 1 + 600761 602138 . 2 303,1035 0,343 -chrIV 600761 602138 HC_gene_1287_tx_97 1 + 600761 602138 . 2 519,795 0,583 -chrIV 600761 602138 HC_gene_1287_tx_98 1 + 600761 602138 . 2 271,786 0,592 -chrIV 600761 602138 HC_gene_1287_tx_99 1 + 600761 602138 . 2 63,597 0,781 -chrIV 600761 602138 HC_gene_1287_tx_100 1 + 600761 602138 . 2 339,954 0,424 -chrIV 600761 602138 HC_gene_1287_tx_101 1 + 600761 602138 . 2 57,846 0,532 -chrIV 600761 602138 HC_gene_1287_tx_102 1 + 600761 602138 . 2 294,975 0,403 -chrIV 600761 602138 HC_gene_1287_tx_103 1 + 600761 602138 . 2 531,702 0,676 -chrIV 600761 602138 HC_gene_1287_tx_104 1 + 600761 602138 . 2 249,930 0,448 -chrIV 600761 602138 HC_gene_1287_tx_105 1 + 600761 602138 . 2 276,972 0,406 -chrIV 600761 602138 HC_gene_1287_tx_106 2 + 600761 602138 . 2 639,615 0,763 -chrIV 600761 602138 HC_gene_1287_tx_107 1 + 600761 602138 . 2 633,387 0,991 -chrIV 600761 602138 HC_gene_1287_tx_108 1 + 600761 602138 . 2 293,585 0,793 -chrIV 600761 602138 HC_gene_1287_tx_109 1 + 600761 602138 . 2 342,702 0,676 -chrIV 600761 602138 HC_gene_1287_tx_110 1 + 600761 602138 . 2 315,999 0,379 -chrIV 600761 602138 HC_gene_1287_tx_111 1 + 600761 602138 . 3 78,203,750 0,127,628 -chrIV 600761 602138 HC_gene_1287_tx_112 1 + 600761 602138 . 2 177,1101 0,277 -chrIV 600761 602138 HC_gene_1287_tx_113 1 + 600761 602138 . 2 895,361 0,1017 -chrIV 600761 602138 HC_gene_1287_tx_114 1 + 600761 602138 . 2 351,615 0,763 -chrIV 600761 602138 HC_gene_1287_tx_115 2 + 600761 602138 . 2 633,585 0,793 -chrIV 600761 602138 HC_gene_1287_tx_116 1 + 600761 602138 . 2 339,783 0,595 -chrIV 600761 602138 HC_gene_1287_tx_117 1 + 600761 602138 . 2 253,666 0,712 -chrIV 600761 602138 HC_gene_1287_tx_118 1 + 600761 602138 . 2 330,969 0,409 -chrIV 600761 602138 HC_gene_1287_tx_119 1 + 600761 602138 . 2 66,828 0,550 -chrIV 600761 602138 HC_gene_1287_tx_120 1 + 600761 602138 . 2 1099,211 0,1167 -chrIV 600761 602138 HC_gene_1287_tx_121 1 + 600761 602138 . 2 369,858 0,520 -chrIV 600761 602138 HC_gene_1287_tx_122 1 + 600761 602138 . 2 336,930 0,448 -chrIV 600761 602138 HC_gene_1287_tx_123 1 + 600761 602138 . 2 70,659 0,719 -chrIV 600761 602138 HC_gene_1287_tx_124 1 + 600761 602138 . 2 81,768 0,610 -chrIV 600761 602138 HC_gene_1287_tx_125 1 + 600761 602138 . 2 105,693 0,685 -chrIV 600761 602138 HC_gene_1287_tx_126 1 + 600761 602138 . 2 293,496 0,882 -chrIV 600761 602138 HC_gene_1287_tx_127 1 + 600761 602138 . 2 381,858 0,520 -chrIV 600761 602138 HC_gene_1287_tx_128 1 + 600761 602138 . 2 222,668 0,710 -chrIV 600761 602138 HC_gene_1287_tx_129 1 + 600761 602138 . 2 249,1065 0,313 -chrIV 600761 602138 HC_gene_1287_tx_130 1 + 600761 602138 . 2 330,999 0,379 -chrIV 600761 602138 HC_gene_1287_tx_131 1 + 600761 602138 . 2 549,675 0,703 -chrIV 600761 602138 HC_gene_1287_tx_132 1 + 600761 602138 . 2 882,445 0,933 -chrIV 600761 602138 HC_gene_1287_tx_133 1 + 600761 602138 . 2 465,768 0,610 -chrIV 600761 602138 HC_gene_1287_tx_134 1 + 600761 602138 . 2 97,975 0,403 -chrIV 600761 602138 HC_gene_1287_tx_135 1 + 600761 602138 . 2 278,702 0,676 -chrIV 600761 602138 HC_gene_1287_tx_136 1 + 600761 602138 . 2 303,993 0,385 -chrIV 600761 602138 HC_gene_1287_tx_137 1 + 600761 602138 . 2 185,702 0,676 -chrIV 600761 602138 HC_gene_1287_tx_138 1 + 600761 602138 . 2 695,530 0,848 -chrIV 600761 602138 HC_gene_1287_tx_139 1 + 600761 602138 . 2 193,888 0,490 -chrIV 600761 602138 HC_gene_1287_tx_140 1 + 600761 602138 . 2 189,812 0,566 -chrIV 600761 602138 HC_gene_1287_tx_141 1 + 600761 602138 . 2 412,668 0,710 -chrIV 600761 602138 HC_gene_1287_tx_142 1 + 600761 602138 . 2 206,570 0,808 -chrIV 600761 602138 HC_gene_1287_tx_143 1 + 600761 602138 . 2 293,750 0,628 -chrIV 600761 602138 HC_gene_1287_tx_144 1 + 600761 602138 . 2 318,888 0,490 -chrIV 600761 602138 HC_gene_1287_tx_145 1 + 600761 602138 . 2 330,993 0,385 -chrIV 600761 602138 HC_gene_1287_tx_146 1 + 600761 602138 . 2 315,993 0,385 -chrIV 600761 602138 HC_gene_1287_tx_147 1 + 600761 602138 . 2 693,597 0,781 -chrIV 600761 602138 HC_gene_1287_tx_148 1 + 600761 602138 . 2 408,879 0,499 -chrIV 600761 602138 HC_gene_1287_tx_149 1 + 600761 602138 . 2 303,969 0,409 -chrIV 600761 602138 HC_gene_1287_tx_150 1 + 600761 602138 . 2 330,972 0,406 -chrIV 600761 602138 HC_gene_1287_tx_151 1 + 600761 602138 . 2 280,636 0,742 -chrIV 600761 602138 HC_gene_1287_tx_152 1 + 600761 602138 . 2 343,898 0,480 -chrIV 600761 602138 HC_gene_1287_tx_153 1 + 600761 602138 . 2 336,972 0,406 -chrIV 600761 602138 HC_gene_1287_tx_154 1 + 600761 602138 . 2 882,417 0,961 -chrIV 600761 602138 HC_gene_1287_tx_155 1 + 600761 602138 . 2 325,987 0,391 -chrIV 600761 602138 HC_gene_1287_tx_156 1 + 600761 602138 . 2 384,879 0,499 -chrIV 600761 602138 HC_gene_1287_tx_157 1 + 600761 602138 . 2 342,898 0,480 -chrIV 600761 602138 HC_gene_1287_tx_158 1 + 600761 602138 . 2 951,327 0,1051 -chrIV 600761 602138 HC_gene_1287_tx_159 1 + 600761 602138 . 2 439,832 0,546 -chrIV 600761 602138 HC_gene_1287_tx_160 1 + 600761 602138 . 2 633,633 0,745 -chrIV 600761 602138 HC_gene_1287_tx_161 1 + 600761 602138 . 2 498,812 0,566 -chrIV 600761 602138 HC_gene_1287_tx_162 1 + 600761 602138 . 2 519,686 0,692 -chrIV 600761 602138 HC_gene_1287_tx_163 1 + 600761 602138 . 2 1110,195 0,1183 -chrIV 600761 602138 HC_gene_1287_tx_164 1 + 600761 602138 . 2 639,597 0,781 -chrIV 600761 602138 HC_gene_1287_tx_165 1 + 600761 602138 . 2 582,636 0,742 -chrIV 600761 602138 HC_gene_1287_tx_166 1 + 600761 602138 . 2 615,617 0,761 -chrIV 600761 602138 HC_gene_1287_tx_167 1 + 600761 602138 . 2 990,312 0,1066 -chrIV 600761 602138 HC_gene_1287_tx_168 1 + 600761 602138 . 2 600,585 0,793 -chrIV 600761 602138 HC_gene_1287_tx_169 1 + 600761 602138 . 2 667,651 0,727 -chrIV 600761 602138 HC_gene_1287_tx_170 1 + 600761 602138 . 2 639,636 0,742 -chrIV 600761 602138 HC_gene_1287_tx_171 1 + 600761 602138 . 2 804,361 0,1017 -chrIV 600761 602138 HC_gene_1287_tx_172 1 + 600761 602138 . 2 615,615 0,763 -chrIV 600761 602138 HC_gene_1287_tx_173 1 + 600761 602138 . 2 702,528 0,850 -chrIV 600761 602138 HC_gene_1287_tx_174 1 + 600761 602138 . 2 643,597 0,781 -chrIV 600761 602138 HC_gene_1287_tx_175 1 + 600761 602138 . 2 695,532 0,846 -chrIV 600761 602138 HC_gene_1287_tx_176 2 + 600761 602138 . 2 639,585 0,793 -chrIV 600761 602138 HC_gene_1287_tx_177 1 + 600761 602138 . 2 643,585 0,793 -chrIV 600761 602138 HC_gene_1287_tx_178 1 + 600761 602138 . 2 693,642 0,736 -chrIV 600761 602138 HC_gene_1287_tx_179 1 + 600761 602138 . 2 662,396 0,982 -chrIV 600761 602138 HC_gene_1287_tx_180 1 + 600761 602138 . 2 990,327 0,1051 -chrIV 600761 602138 HC_gene_1287_tx_181 1 + 600761 602138 . 2 932,361 0,1017 -chrIV 600761 602138 HC_gene_1287_tx_182 1 + 600761 602138 . 2 923,396 0,982 -chrIV 600761 602138 HC_gene_1287_tx_183 1 + 600761 602138 . 2 807,398 0,980 -chrIV 600761 602138 HC_gene_1287_tx_184 1 + 600761 602138 . 2 917,414 0,964 -chrIV 600761 602138 HC_gene_1287_tx_185 1 + 600761 602138 . 2 807,510 0,868 -chrIV 600761 602138 HC_gene_1287_tx_186 1 + 600761 602138 . 2 816,312 0,1066 -chrIV 600761 602138 HC_gene_1287_tx_187 1 + 600761 602138 . 2 855,447 0,931 -chrIV 600761 602138 HC_gene_1287_tx_188 1 + 600761 602138 . 2 951,378 0,1000 -chrIV 600761 602138 HC_gene_1287_tx_189 1 + 600761 602138 . 2 1032,252 0,1126 -chrIV 600761 602810 HC_gene_1287_tx_228 1 + 600761 602810 . 1 2050 0 -chrIV 600763 602138 HC_gene_1287_tx_190 1 + 600763 602138 . 1 1376 0 -chrIV 600766 602138 HC_gene_1287_tx_191 1 + 600766 602138 . 1 1373 0 -chrIV 600767 602138 HC_gene_1287_tx_192 2 + 600767 602138 . 1 1372 0 -chrIV 600768 602138 HC_gene_1287_tx_193 1 + 600768 602138 . 2 813,361 0,1010 -chrIV 600770 602138 HC_gene_1287_tx_194 1 + 600770 602138 . 1 1369 0 -chrIV 600772 602138 HC_gene_1287_tx_195 1 + 600772 602138 . 1 1367 0 -chrIV 600776 602138 HC_gene_1287_tx_196 2 + 600776 602138 . 1 1363 0 -chrIV 600777 602138 HC_gene_1287_tx_197 1 + 600777 602138 . 1 1362 0 -chrIV 600779 601858 HC_gene_1287_tx_225 2 + 600779 601858 . 1 1080 0 -chrIV 600789 602138 HC_gene_1287_tx_198 1 + 600789 602138 . 1 1350 0 -chrIV 600790 601858 HC_gene_1287_tx_226 1 + 600790 601858 . 1 1069 0 -chrIV 600791 602138 HC_gene_1287_tx_199 2 + 600791 602138 . 1 1348 0 -chrIV 600802 602138 HC_gene_1287_tx_200 1 + 600802 602138 . 2 787,447 0,890 -chrIV 600815 602138 HC_gene_1287_tx_201 1 + 600815 602138 . 1 1324 0 -chrIV 600903 601858 HC_gene_1287_tx_227 1 + 600903 601858 . 1 956 0 -chrIV 600903 602138 HC_gene_1287_tx_202 1 + 600903 602138 . 1 1236 0 -chrIV 601036 602138 HC_gene_1287_tx_203 1 + 601036 602138 . 1 1103 0 -chrIV 601147 602138 HC_gene_1287_tx_204 1 + 601147 602138 . 1 992 0 -chrIV 601211 602138 HC_gene_1287_tx_205 1 + 601211 602138 . 1 928 0 -chrIV 601279 602138 HC_gene_1287_tx_206 1 + 601279 602138 . 1 860 0 -chrIV 601298 602138 HC_gene_1287_tx_207 1 + 601298 602138 . 1 841 0 -chrIV 601311 602138 HC_gene_1287_tx_208 1 + 601311 602138 . 2 278,383 0,445 -chrIV 601330 602138 HC_gene_1287_tx_209 1 + 601330 602138 . 1 809 0 -chrIV 601360 602138 HC_gene_1287_tx_210 2 + 601360 602138 . 1 779 0 -chrIV 601398 602138 HC_gene_1287_tx_211 1 + 601398 602138 . 1 741 0 -chrIV 601399 601858 HC_gene_1287_tx_229 1 + 601399 601858 . 1 460 0 -chrIV 601406 601858 HC_gene_1287_tx_230 1 + 601406 601858 . 1 453 0 -chrIV 601424 602138 HC_gene_1287_tx_212 1 + 601424 602138 . 1 715 0 -chrIV 601448 602138 HC_gene_1287_tx_213 1 + 601448 602138 . 1 691 0 -chrIV 601478 602138 HC_gene_1287_tx_214 1 + 601478 602138 . 1 661 0 -chrIV 601480 602138 HC_gene_1287_tx_215 1 + 601480 602138 . 1 659 0 -chrIV 601501 602138 HC_gene_1287_tx_216 1 + 601501 602138 . 1 638 0 -chrIV 601505 602138 HC_gene_1287_tx_217 1 + 601505 602138 . 1 634 0 -chrIV 601580 601858 HC_gene_1287_tx_231 2 + 601580 601858 . 1 279 0 -chrIV 601580 602138 HC_gene_1287_tx_218 877 + 601580 602138 . 1 559 0 -chrIV 601580 602138 HC_gene_1287_tx_219 1 + 601580 602138 . 2 298,199 0,360 -chrIV 601591 602138 HC_gene_1287_tx_220 1 + 601591 602138 . 1 548 0 -chrIV 601777 602138 HC_gene_1287_tx_232 1 + 601777 602138 . 1 362 0 -chrIV 601781 602138 HC_gene_1287_tx_233 1 + 601781 602138 . 1 358 0 -chrIV 601783 602138 HC_gene_1287_tx_234 2 + 601783 602138 . 1 356 0 -chrIV 601786 602138 HC_gene_1287_tx_235 1 + 601786 602138 . 1 353 0 -chrIV 601816 602138 HC_gene_1287_tx_236 697 + 601816 602138 . 1 323 0 -chrIV 601818 602138 HC_gene_1287_tx_237 1 + 601818 602138 . 1 321 0 -chrIV 601825 602138 HC_gene_1287_tx_238 1 + 601825 602138 . 1 314 0 -chrIV 602037 602900 HC_gene_1896_tx_1 32 - 602037 602900 . 1 864 0 -chrIV 602037 602900 HC_gene_1896_tx_2 1 - 602037 602900 . 2 502,172 0,692 -chrIV 602633 602994 HC_gene_1897_tx_1 1 - 602633 602994 . 1 362 0 -chrIV 602642 602994 HC_gene_1897_tx_2 1 - 602642 602994 . 1 353 0 -chrIV 603029 603251 HC_gene_1898_tx_1 1 - 603029 603251 . 1 223 0 -chrIV 603042 603509 HC_gene_1288_tx_1 25 + 603042 603509 . 1 468 0 -chrIV 603042 603611 HC_gene_1288_tx_2 52 + 603042 603611 . 1 570 0 -chrIV 603042 603693 HC_gene_1288_tx_3 18 + 603042 603693 . 1 652 0 -chrIV 603204 603509 HC_gene_1288_tx_4 1 + 603204 603509 . 1 306 0 -chrIV 603204 603611 HC_gene_1288_tx_5 7 + 603204 603611 . 1 408 0 -chrIV 603204 603693 HC_gene_1288_tx_6 6 + 603204 603693 . 1 490 0 -chrIV 603378 603712 HC_gene_1899_tx_1 10 - 603378 603712 . 1 335 0 -chrIV 603378 603839 HC_gene_1899_tx_2 136 - 603378 603839 . 1 462 0 -chrIV 603378 603839 HC_gene_1899_tx_3 1 - 603378 603839 . 2 340,52 0,410 -chrIV 603378 603839 HC_gene_1899_tx_4 1 - 603378 603839 . 2 254,110 0,352 -chrIV 603397 603611 HC_gene_1288_tx_7 3 + 603397 603611 . 1 215 0 -chrIV 603397 603693 HC_gene_1288_tx_8 2 + 603397 603693 . 1 297 0 -chrIV 603397 603744 HC_gene_1288_tx_9 1 + 603397 603744 . 1 348 0 -chrIV 603583 603839 HC_gene_1899_tx_5 1 - 603583 603839 . 1 257 0 -chrIV 603920 604534 MC_gene_1900_tx_1 1 - 603920 604534 . 1 615 0 -chrIV 603975 607163 HC_gene_1289_tx_1 1 + 603975 607163 . 1 3189 0 -chrIV 603975 607295 HC_gene_1289_tx_2 1 + 603975 607295 . 1 3321 0 -chrIV 603975 607295 HC_gene_1289_tx_3 1 + 603975 607295 . 2 2320,916 0,2405 -chrIV 605283 607163 HC_gene_1289_tx_4 1 + 605283 607163 . 1 1881 0 -chrIV 606556 607163 HC_gene_1289_tx_5 3 + 606556 607163 . 1 608 0 -chrIV 607069 607669 HC_gene_1901_tx_1 1 - 607069 607669 . 1 601 0 -chrIV 607231 607669 HC_gene_1901_tx_2 14 - 607231 607669 . 1 439 0 -chrIV 607437 607669 HC_gene_1901_tx_3 1 - 607437 607669 . 1 233 0 -chrIV 608155 610168 HC_gene_1902_tx_1 1 - 608155 610168 . 1 2014 0 -chrIV 609111 610168 HC_gene_1902_tx_2 1 - 609111 610168 . 1 1058 0 -chrIV 610361 612071 HC_gene_1290_tx_1 1 + 610361 612071 . 1 1711 0 -chrIV 610362 612071 HC_gene_1290_tx_2 1 + 610362 612071 . 1 1710 0 -chrIV 610363 612071 HC_gene_1290_tx_3 1 + 610363 612071 . 1 1709 0 -chrIV 610365 612071 HC_gene_1290_tx_4 1 + 610365 612071 . 1 1707 0 -chrIV 610366 612071 HC_gene_1290_tx_5 1 + 610366 612071 . 1 1706 0 -chrIV 610395 612071 HC_gene_1290_tx_6 9 + 610395 612071 . 1 1677 0 -chrIV 610395 612071 HC_gene_1290_tx_7 1 + 610395 612071 . 2 918,658 0,1019 -chrIV 610395 612071 HC_gene_1290_tx_8 1 + 610395 612071 . 2 896,736 0,941 -chrIV 610406 612071 HC_gene_1290_tx_9 1 + 610406 612071 . 1 1666 0 -chrIV 611034 611580 LC_gene_1903_tx_1 1 - 611034 611580 . 1 547 0 -chrIV 612050 613340 HC_gene_1291_tx_1 72 + 612050 613340 . 1 1291 0 -chrIV 612050 613340 HC_gene_1291_tx_2 1 + 612050 613340 . 2 165,1069 0,222 -chrIV 612050 613340 HC_gene_1291_tx_3 1 + 612050 613340 . 2 1180,38 0,1253 -chrIV 612050 613340 HC_gene_1291_tx_4 1 + 612050 613340 . 2 156,864 0,427 -chrIV 612050 613435 HC_gene_1291_tx_5 1 + 612050 613435 . 1 1386 0 -chrIV 612262 613340 HC_gene_1291_tx_6 14 + 612262 613340 . 1 1079 0 -chrIV 612262 613340 HC_gene_1291_tx_7 1 + 612262 613340 . 2 947,38 0,1041 -chrIV 612693 613340 HC_gene_1291_tx_8 15 + 612693 613340 . 1 648 0 -chrIV 613160 613643 HC_gene_1904_tx_1 16 - 613160 613643 . 1 484 0 -chrIV 613160 614030 HC_gene_1904_tx_3 49 - 613160 614030 . 1 871 0 -chrIV 613256 613643 HC_gene_1904_tx_2 6 - 613256 613643 . 1 388 0 -chrIV 613256 614030 HC_gene_1904_tx_4 35 - 613256 614030 . 1 775 0 -chrIV 614199 614936 HC_gene_1905_tx_1 3 - 614199 614936 . 1 738 0 -chrIV 614199 615248 HC_gene_1905_tx_2 5 - 614199 615248 . 1 1050 0 -chrIV 614199 615248 HC_gene_1905_tx_3 1 - 614199 615248 . 3 503,61,307 0,599,743 -chrIV 614199 615400 HC_gene_1905_tx_4 5 - 614199 615400 . 1 1202 0 -chrIV 614199 615528 HC_gene_1905_tx_5 8 - 614199 615528 . 1 1330 0 -chrIV 614199 616260 HC_gene_1905_tx_6 35 - 614199 616260 . 1 2062 0 -chrIV 614199 616260 HC_gene_1905_tx_7 1 - 614199 616260 . 3 576,709,600 0,673,1462 -chrIV 614239 616304 MC_gene_1292_tx_1 1 + 614239 616304 . 1 2066 0 -chrIV 615187 615400 HC_gene_1905_tx_8 1 - 615187 615400 . 1 214 0 -chrIV 615187 616260 HC_gene_1905_tx_9 5 - 615187 616260 . 1 1074 0 -chrIV 616313 616904 HC_gene_1293_tx_1 1 + 616313 616904 . 1 592 0 -chrIV 616731 616904 HC_gene_1293_tx_2 1 + 616731 616904 . 1 174 0 -chrIV 616731 617011 HC_gene_1906_tx_1 61 - 616731 617011 . 1 281 0 -chrIV 616731 617227 HC_gene_1906_tx_2 1281 - 616731 617227 . 1 497 0 -chrIV 617376 617763 HC_gene_1907_tx_1 7 - 617376 617763 . 1 388 0 -chrIV 617376 617840 HC_gene_1907_tx_2 34 - 617376 617840 . 1 465 0 -chrIV 617376 618004 HC_gene_1907_tx_3 14 - 617376 618004 . 1 629 0 -chrIV 617376 618253 HC_gene_1907_tx_4 8 - 617376 618253 . 1 878 0 -chrIV 617376 618336 HC_gene_1907_tx_5 108 - 617376 618336 . 1 961 0 -chrIV 617458 618423 HC_gene_1294_tx_1 5 + 617458 618423 . 1 966 0 -chrIV 617514 618423 HC_gene_1294_tx_2 5 + 617514 618423 . 1 910 0 -chrIV 617808 618423 HC_gene_1294_tx_3 3 + 617808 618423 . 1 616 0 -chrIV 618306 619125 HC_gene_1908_tx_1 1 - 618306 619125 . 1 820 0 -chrIV 618306 619259 HC_gene_1908_tx_2 1 - 618306 619259 . 1 954 0 -chrIV 618306 619446 HC_gene_1908_tx_3 2 - 618306 619446 . 1 1141 0 -chrIV 618306 619809 HC_gene_1908_tx_4 1 - 618306 619809 . 1 1504 0 -chrIV 618306 619830 HC_gene_1908_tx_5 11 - 618306 619830 . 1 1525 0 -chrIV 618306 619847 HC_gene_1908_tx_6 1 - 618306 619847 . 1 1542 0 -chrIV 619848 620036 MC_gene_1909_tx_1 1 - 619848 620036 . 1 189 0 -chrIV 620153 621521 HC_gene_1910_tx_1 1 - 620153 621521 . 1 1369 0 -chrIV 620416 620995 LC_gene_1295_tx_1 1 + 620416 620995 . 1 580 0 -chrIV 620964 621521 HC_gene_1910_tx_2 8 - 620964 621521 . 1 558 0 -chrIV 620964 621698 HC_gene_1910_tx_3 2 - 620964 621698 . 1 735 0 -chrIV 621990 624814 HC_gene_1296_tx_1 7 + 621990 624814 . 1 2825 0 -chrIV 621990 624814 HC_gene_1296_tx_2 1 + 621990 624814 . 2 1455,1294 0,1531 -chrIV 621990 624814 HC_gene_1296_tx_3 1 + 621990 624814 . 2 957,1480 0,1345 -chrIV 621990 624901 HC_gene_1296_tx_4 6 + 621990 624901 . 1 2912 0 -chrIV 621990 624901 HC_gene_1296_tx_5 1 + 621990 624901 . 2 2404,434 0,2478 -chrIV 623894 624814 HC_gene_1296_tx_6 1 + 623894 624814 . 1 921 0 -chrIV 623894 624901 HC_gene_1296_tx_7 3 + 623894 624901 . 1 1008 0 -chrIV 624148 624814 HC_gene_1296_tx_8 3 + 624148 624814 . 1 667 0 -chrIV 624148 624901 HC_gene_1296_tx_9 1 + 624148 624901 . 1 754 0 -chrIV 624725 626057 HC_gene_1911_tx_1 30 - 624725 626057 . 1 1333 0 -chrIV 624725 626057 HC_gene_1911_tx_2 1 - 624725 626057 . 2 499,272 0,1061 -chrIV 624852 626057 HC_gene_1911_tx_3 6 - 624852 626057 . 1 1206 0 -chrIV 625383 626481 MC_gene_1297_tx_1 1 + 625383 626481 . 1 1099 0 -chrIV 626373 627315 HC_gene_1912_tx_1 22 - 626373 627315 . 1 943 0 -chrIV 626373 627442 HC_gene_1912_tx_2 17 - 626373 627442 . 1 1070 0 -chrIV 626373 627817 HC_gene_1912_tx_3 11 - 626373 627817 . 1 1445 0 -chrIV 626373 627817 HC_gene_1912_tx_4 1 - 626373 627817 . 2 630,730 0,715 -chrIV 626373 627817 HC_gene_1912_tx_5 1 - 626373 627817 . 2 584,766 0,679 -chrIV 626373 628592 HC_gene_1912_tx_7 100 - 626373 628592 . 1 2220 0 -chrIV 626373 628592 HC_gene_1912_tx_8 1 - 626373 628592 . 2 1381,221 0,1999 -chrIV 626515 627817 HC_gene_1912_tx_6 2 - 626515 627817 . 1 1303 0 -chrIV 626515 628592 HC_gene_1912_tx_9 6 - 626515 628592 . 1 2078 0 -chrIV 626958 628592 HC_gene_1912_tx_10 1 - 626958 628592 . 1 1635 0 -chrIV 629324 630654 MC_gene_1913_tx_1 1 - 629324 630654 . 1 1331 0 -chrIV 629852 630704 HC_gene_1298_tx_1 157 + 629852 630704 . 2 54,531 0,322 -chrIV 629852 630704 HC_gene_1298_tx_2 13 + 629852 630704 . 1 853 0 -chrIV 629852 630824 HC_gene_1298_tx_3 2 + 629852 630824 . 2 54,651 0,322 -chrIV 629852 630824 HC_gene_1298_tx_4 1 + 629852 630824 . 1 973 0 -chrIV 630180 630704 HC_gene_1298_tx_5 92 + 630180 630704 . 1 525 0 -chrIV 630180 630824 HC_gene_1298_tx_6 1 + 630180 630824 . 1 645 0 -chrIV 630395 630704 HC_gene_1298_tx_7 16 + 630395 630704 . 1 310 0 -chrIV 630395 630824 HC_gene_1298_tx_8 1 + 630395 630824 . 1 430 0 -chrIV 630586 631301 MC_gene_1914_tx_1 1 - 630586 631301 . 1 716 0 -chrIV 631259 633316 HC_gene_1299_tx_1 1 + 631259 633316 . 1 2058 0 -chrIV 631661 632095 HC_gene_1299_tx_3 1 + 631661 632095 . 1 435 0 -chrIV 631661 633316 HC_gene_1299_tx_2 1 + 631661 633316 . 1 1656 0 -chrIV 634537 636181 HC_gene_1300_tx_1 7 + 634537 636181 . 1 1645 0 -chrIV 636485 636793 LC_gene_1915_tx_1 1 - 636485 636793 . 1 309 0 -chrIV 636573 640039 HC_gene_1301_tx_1 1 + 636573 640039 . 1 3467 0 -chrIV 636691 639969 HC_gene_1301_tx_2 1 + 636691 639969 . 1 3279 0 -chrIV 636944 639969 HC_gene_1301_tx_3 4 + 636944 639969 . 1 3026 0 -chrIV 636944 640039 HC_gene_1301_tx_4 1 + 636944 640039 . 1 3096 0 -chrIV 638473 639969 HC_gene_1301_tx_5 3 + 638473 639969 . 1 1497 0 -chrIV 639269 639969 HC_gene_1301_tx_6 5 + 639269 639969 . 1 701 0 -chrIV 639269 640039 HC_gene_1301_tx_7 1 + 639269 640039 . 1 771 0 -chrIV 640061 643462 HC_gene_1916_tx_1 1 - 640061 643462 . 1 3402 0 -chrIV 640061 643630 HC_gene_1916_tx_2 1 - 640061 643630 . 1 3570 0 -chrIV 640061 643931 HC_gene_1916_tx_3 6 - 640061 643931 . 1 3871 0 -chrIV 640061 643931 HC_gene_1916_tx_4 1 - 640061 643931 . 2 1115,2689 0,1182 -chrIV 640061 643931 HC_gene_1916_tx_5 1 - 640061 643931 . 2 2492,1286 0,2585 -chrIV 640061 643931 HC_gene_1916_tx_6 1 - 640061 643931 . 2 2261,575 0,3296 -chrIV 643936 644541 HC_gene_1917_tx_1 1 - 643936 644541 . 1 606 0 -chrIV 643936 644670 HC_gene_1917_tx_2 2 - 643936 644670 . 1 735 0 -chrIV 643936 644957 HC_gene_1917_tx_3 1 - 643936 644957 . 1 1022 0 -chrIV 643936 644959 HC_gene_1917_tx_4 1 - 643936 644959 . 1 1024 0 -chrIV 643936 644968 HC_gene_1917_tx_5 1 - 643936 644968 . 1 1033 0 -chrIV 643936 644969 HC_gene_1917_tx_6 18 - 643936 644969 . 1 1034 0 -chrIV 644127 644541 HC_gene_1917_tx_8 25 - 644127 644541 . 1 415 0 -chrIV 644127 644670 HC_gene_1917_tx_9 21 - 644127 644670 . 1 544 0 -chrIV 644127 644738 HC_gene_1917_tx_10 10 - 644127 644738 . 1 612 0 -chrIV 644127 644969 HC_gene_1917_tx_7 161 - 644127 644969 . 1 843 0 -chrIV 644201 644882 LC_gene_1302_tx_1 1 + 644201 644882 . 1 682 0 -chrIV 645531 651167 LC_gene_1918_tx_1 1 - 645531 651167 . 2 3030,2533 0,3104 -chrIV 650521 651914 LC_gene_1303_tx_1 1 + 650521 651914 . 1 1394 0 -chrIV 652107 652353 HC_gene_1919_tx_1 2 - 652107 652353 . 1 247 0 -chrIV 652107 652525 HC_gene_1919_tx_2 8 - 652107 652525 . 1 419 0 -chrIV 652619 653136 HC_gene_1920_tx_1 16 - 652619 653136 . 1 518 0 -chrIV 652619 653399 HC_gene_1920_tx_2 1 - 652619 653399 . 1 781 0 -chrIV 652718 654772 HC_gene_1304_tx_1 130 + 652718 654772 . 2 63,1249 0,806 -chrIV 652718 654772 HC_gene_1304_tx_2 9 + 652718 654772 . 1 2055 0 -chrIV 652718 654772 HC_gene_1304_tx_3 4 + 652718 654772 . 2 63,1246 0,809 -chrIV 652718 654772 HC_gene_1304_tx_4 2 + 652718 654772 . 2 63,1292 0,763 -chrIV 653380 654772 HC_gene_1304_tx_5 15 + 653380 654772 . 1 1393 0 -chrIV 653577 654772 HC_gene_1304_tx_6 217 + 653577 654772 . 1 1196 0 -chrIV 653577 655617 HC_gene_1305_tx_1 1 + 653577 655617 . 1 2041 0 -chrIV 653577 655729 HC_gene_1305_tx_2 2 + 653577 655729 . 1 2153 0 -chrIV 653710 654772 HC_gene_1304_tx_7 2 + 653710 654772 . 1 1063 0 -chrIV 653791 654772 HC_gene_1304_tx_8 67 + 653791 654772 . 1 982 0 -chrIV 653921 654772 HC_gene_1304_tx_9 20 + 653921 654772 . 1 852 0 -chrIV 654063 654772 HC_gene_1304_tx_10 92 + 654063 654772 . 1 710 0 -chrIV 654121 654772 HC_gene_1304_tx_11 15 + 654121 654772 . 1 652 0 -chrIV 654225 654772 HC_gene_1304_tx_12 43 + 654225 654772 . 1 548 0 -chrIV 654288 654772 HC_gene_1304_tx_13 110 + 654288 654772 . 1 485 0 -chrIV 654288 655617 HC_gene_1305_tx_3 1 + 654288 655617 . 1 1330 0 -chrIV 654545 654791 HC_gene_1921_tx_1 51 - 654545 654791 . 1 247 0 -chrIV 654545 654883 HC_gene_1921_tx_2 1 - 654545 654883 . 1 339 0 -chrIV 654992 655617 HC_gene_1305_tx_4 138 + 654992 655617 . 1 626 0 -chrIV 654992 655617 HC_gene_1305_tx_5 1 + 654992 655617 . 2 212,345 0,281 -chrIV 654992 655729 HC_gene_1305_tx_6 116 + 654992 655729 . 1 738 0 -chrIV 655239 655617 HC_gene_1305_tx_7 12 + 655239 655617 . 1 379 0 -chrIV 655239 655729 HC_gene_1305_tx_8 25 + 655239 655729 . 1 491 0 -chrIV 655563 657109 HC_gene_1922_tx_1 10 - 655563 657109 . 1 1547 0 -chrIV 655563 657495 HC_gene_1922_tx_2 1 - 655563 657495 . 2 805,1067 0,866 -chrIV 655563 657495 HC_gene_1922_tx_3 68 - 655563 657495 . 1 1933 0 -chrIV 655563 657495 HC_gene_1922_tx_4 1 - 655563 657495 . 2 778,1100 0,833 -chrIV 657673 658116 LC_gene_1923_tx_1 1 - 657673 658116 . 1 444 0 -chrIV 657771 661152 HC_gene_1306_tx_1 2 + 657771 661152 . 1 3382 0 -chrIV 658304 661152 HC_gene_1306_tx_2 7 + 658304 661152 . 1 2849 0 -chrIV 658505 661228 HC_gene_1306_tx_3 1 + 658505 661228 . 1 2724 0 -chrIV 661070 664960 HC_gene_1924_tx_1 1 - 661070 664960 . 1 3891 0 -chrIV 665122 666822 HC_gene_1925_tx_1 2 - 665122 666822 . 1 1701 0 -chrIV 665123 665372 HC_gene_1307_tx_1 1 + 665123 665372 . 1 250 0 -chrIV 665282 666822 HC_gene_1925_tx_2 29 - 665282 666822 . 1 1541 0 -chrIV 666981 667908 HC_gene_1308_tx_1 2 + 666981 667908 . 1 928 0 -chrIV 667577 667868 LC_gene_1926_tx_1 1 - 667577 667868 . 1 292 0 -chrIV 668292 668879 MC_gene_1309_tx_1 1 + 668292 668879 . 2 70,462 0,126 -chrIV 668335 670548 MC_gene_1309_tx_2 1 + 668335 670548 . 1 2214 0 -chrIV 668335 671107 MC_gene_1309_tx_3 1 + 668335 671107 . 1 2773 0 -chrIV 668338 668718 MC_gene_1309_tx_4 1 + 668338 668718 . 1 381 0 -chrIV 668666 671050 HC_gene_1927_tx_1 2 - 668666 671050 . 1 2385 0 -chrIV 668874 671050 HC_gene_1927_tx_2 3 - 668874 671050 . 1 2177 0 -chrIV 671255 673456 HC_gene_1310_tx_1 12 + 671255 673456 . 1 2202 0 -chrIV 673346 675884 MC_gene_1928_tx_1 1 - 673346 675884 . 1 2539 0 -chrIV 673354 675658 MC_gene_1928_tx_2 1 - 673354 675658 . 1 2305 0 -chrIV 676046 678009 HC_gene_1311_tx_1 15 + 676046 678009 . 1 1964 0 -chrIV 676256 678009 HC_gene_1311_tx_2 3 + 676256 678009 . 1 1754 0 -chrIV 677510 678009 HC_gene_1311_tx_3 3 + 677510 678009 . 1 500 0 -chrIV 677779 678183 HC_gene_1929_tx_1 1 - 677779 678183 . 1 405 0 -chrIV 677779 679986 HC_gene_1929_tx_2 1 - 677779 679986 . 1 2208 0 -chrIV 677842 679773 HC_gene_1929_tx_3 1 - 677842 679773 . 1 1932 0 -chrIV 677842 679986 HC_gene_1929_tx_4 9 - 677842 679986 . 1 2145 0 -chrIV 677842 680263 HC_gene_1929_tx_5 1 - 677842 680263 . 1 2422 0 -chrIV 678083 679773 HC_gene_1929_tx_6 2 - 678083 679773 . 1 1691 0 -chrIV 678083 679986 HC_gene_1929_tx_7 13 - 678083 679986 . 1 1904 0 -chrIV 678210 679228 LC_gene_1312_tx_1 1 + 678210 679228 . 1 1019 0 -chrIV 680211 680503 HC_gene_1313_tx_1 7 + 680211 680503 . 1 293 0 -chrIV 680418 681410 HC_gene_1930_tx_1 7 - 680418 681410 . 1 993 0 -chrIV 680418 681713 HC_gene_1930_tx_2 24 - 680418 681713 . 1 1296 0 -chrIV 680522 681450 MC_gene_1314_tx_1 1 + 680522 681450 . 1 929 0 -chrIV 682049 682607 HC_gene_1315_tx_1 2 + 682049 682607 . 1 559 0 -chrIV 682061 682569 MC_gene_1931_tx_1 1 - 682061 682569 . 1 509 0 -chrIV 682134 682607 HC_gene_1315_tx_2 120 + 682134 682607 . 1 474 0 -chrIV 682134 682723 HC_gene_1315_tx_3 49 + 682134 682723 . 1 590 0 -chrIV 682323 682607 HC_gene_1315_tx_4 5 + 682323 682607 . 1 285 0 -chrIV 682323 682723 HC_gene_1315_tx_5 4 + 682323 682723 . 1 401 0 -chrIV 682599 683617 HC_gene_1932_tx_1 55 - 682599 683617 . 1 1019 0 -chrIV 682599 683617 HC_gene_1932_tx_2 1 - 682599 683617 . 2 777,103 0,916 -chrIV 683733 684516 HC_gene_1933_tx_1 2 - 683733 684516 . 1 784 0 -chrIV 683733 685669 HC_gene_1933_tx_2 3 - 683733 685669 . 1 1937 0 -chrIV 683750 683964 MC_gene_1316_tx_1 1 + 683750 683964 . 1 215 0 -chrIV 683898 684516 HC_gene_1933_tx_6 6 - 683898 684516 . 1 619 0 -chrIV 683898 685669 HC_gene_1933_tx_3 22 - 683898 685669 . 1 1772 0 -chrIV 683898 685669 HC_gene_1933_tx_4 1 - 683898 685669 . 2 656,1044 0,728 -chrIV 683898 685669 HC_gene_1933_tx_5 1 - 683898 685669 . 2 678,1044 0,728 -chrIV 685851 687459 HC_gene_1317_tx_1 1 + 685851 687459 . 1 1609 0 -chrIV 685851 687945 HC_gene_1317_tx_2 3 + 685851 687945 . 1 2095 0 -chrIV 685851 688171 HC_gene_1317_tx_3 1 + 685851 688171 . 2 1361,870 0,1451 -chrIV 687503 687858 MC_gene_1934_tx_1 1 - 687503 687858 . 1 356 0 -chrIV 688142 689071 HC_gene_1318_tx_1 7 + 688142 689071 . 1 930 0 -chrIV 688142 689212 HC_gene_1318_tx_2 2 + 688142 689212 . 1 1071 0 -chrIV 688142 689407 HC_gene_1318_tx_3 1 + 688142 689407 . 1 1266 0 -chrIV 688142 689616 HC_gene_1318_tx_4 1 + 688142 689616 . 1 1475 0 -chrIV 688142 689617 HC_gene_1318_tx_5 1 + 688142 689617 . 1 1476 0 -chrIV 688142 690593 HC_gene_1318_tx_6 24 + 688142 690593 . 1 2452 0 -chrIV 688142 690593 HC_gene_1318_tx_7 1 + 688142 690593 . 2 119,2265 0,187 -chrIV 688142 690593 HC_gene_1318_tx_8 1 + 688142 690593 . 2 1286,1094 0,1358 -chrIV 688142 690593 HC_gene_1318_tx_9 1 + 688142 690593 . 2 606,1061 0,1391 -chrIV 688142 690593 HC_gene_1318_tx_10 1 + 688142 690593 . 2 1351,974 0,1478 -chrIV 688197 690593 HC_gene_1318_tx_11 1 + 688197 690593 . 2 1084,1214 0,1183 -chrIV 688341 690593 HC_gene_1318_tx_12 6 + 688341 690593 . 1 2253 0 -chrIV 689279 690593 HC_gene_1318_tx_13 3 + 689279 690593 . 1 1315 0 -chrIV 689279 690593 HC_gene_1318_tx_14 1 + 689279 690593 . 2 80,686 0,629 -chrIV 689279 690593 HC_gene_1318_tx_15 1 + 689279 690593 . 2 1136,133 0,1182 -chrIV 690213 690593 HC_gene_1318_tx_16 15 + 690213 690593 . 1 381 0 -chrIV 690251 690489 MC_gene_1935_tx_1 1 - 690251 690489 . 1 239 0 -chrIV 690965 691485 MC_gene_1319_tx_1 1 + 690965 691485 . 1 521 0 -chrIV 691076 691359 MC_gene_1319_tx_2 1 + 691076 691359 . 1 284 0 -chrIV 691272 691739 HC_gene_1936_tx_1 1 - 691272 691739 . 1 468 0 -chrIV 691272 693235 HC_gene_1936_tx_3 9 - 691272 693235 . 1 1964 0 -chrIV 691340 691739 HC_gene_1936_tx_2 18 - 691340 691739 . 1 400 0 -chrIV 691340 693235 HC_gene_1936_tx_4 64 - 691340 693235 . 1 1896 0 -chrIV 691340 693235 HC_gene_1936_tx_5 1 - 691340 693235 . 2 556,1265 0,631 -chrIV 691340 693235 HC_gene_1936_tx_6 1 - 691340 693235 . 2 1665,137 0,1759 -chrIV 691340 693235 HC_gene_1936_tx_7 1 - 691340 693235 . 2 1255,569 0,1327 -chrIV 693476 694284 HC_gene_1320_tx_1 77 + 693476 694284 . 1 809 0 -chrIV 693533 694172 LC_gene_1937_tx_1 1 - 693533 694172 . 1 640 0 -chrIV 693712 694284 HC_gene_1320_tx_2 9 + 693712 694284 . 1 573 0 -chrIV 693821 694284 HC_gene_1320_tx_3 5 + 693821 694284 . 1 464 0 -chrIV 693876 694284 HC_gene_1320_tx_4 14 + 693876 694284 . 1 409 0 -chrIV 694411 698047 HC_gene_1321_tx_1 5 + 694411 698047 . 1 3637 0 -chrIV 694411 698047 HC_gene_1321_tx_2 1 + 694411 698047 . 3 1318,1327,850 0,1400,2787 -chrIV 697896 698928 HC_gene_1938_tx_1 3 - 697896 698928 . 1 1033 0 -chrIV 697896 699421 HC_gene_1938_tx_2 2 - 697896 699421 . 1 1526 0 -chrIV 697896 699509 HC_gene_1938_tx_3 2 - 697896 699509 . 1 1614 0 -chrIV 699735 700321 HC_gene_1322_tx_1 3 + 699735 700321 . 1 587 0 -chrIV 699859 700321 HC_gene_1322_tx_2 3 + 699859 700321 . 1 463 0 -chrIV 699859 701830 HC_gene_1322_tx_5 2 + 699859 701830 . 1 1972 0 -chrIV 699950 700321 HC_gene_1322_tx_3 3 + 699950 700321 . 1 372 0 -chrIV 699950 701830 HC_gene_1322_tx_6 1 + 699950 701830 . 1 1881 0 -chrIV 699957 700321 HC_gene_1322_tx_4 1 + 699957 700321 . 1 365 0 -chrIV 700159 702709 HC_gene_1939_tx_1 7 - 700159 702709 . 1 2551 0 -chrIV 700255 701830 HC_gene_1322_tx_7 3 + 700255 701830 . 1 1576 0 -chrIV 701917 702709 HC_gene_1939_tx_2 3 - 701917 702709 . 1 793 0 -chrIV 703142 703488 HC_gene_1323_tx_1 2 + 703142 703488 . 1 347 0 -chrIV 703384 703766 HC_gene_1940_tx_1 16 - 703384 703766 . 1 383 0 -chrIV 703384 704124 HC_gene_1940_tx_2 11 - 703384 704124 . 1 741 0 -chrIV 704079 704495 HC_gene_1324_tx_1 12 + 704079 704495 . 1 417 0 -chrIV 704407 704495 HC_gene_1324_tx_2 1 + 704407 704495 . 1 89 0 -chrIV 704407 705551 HC_gene_1324_tx_3 2 + 704407 705551 . 1 1145 0 -chrIV 708789 709304 HC_gene_1325_tx_1 42 + 708789 709304 . 1 516 0 -chrIV 709504 713140 HC_gene_1326_tx_1 11 + 709504 713140 . 1 3637 0 -chrIV 709504 713252 HC_gene_1326_tx_2 1 + 709504 713252 . 1 3749 0 -chrIV 709504 713252 HC_gene_1326_tx_3 1 + 709504 713252 . 2 1416,2278 0,1471 -chrIV 710500 713252 HC_gene_1326_tx_4 1 + 710500 713252 . 1 2753 0 -chrIV 711527 713252 HC_gene_1326_tx_5 3 + 711527 713252 . 1 1726 0 -chrIV 713060 713737 HC_gene_1941_tx_1 2 - 713060 713737 . 1 678 0 -chrIV 713060 714497 HC_gene_1941_tx_6 1 - 713060 714497 . 1 1438 0 -chrIV 713060 714734 HC_gene_1941_tx_7 2 - 713060 714734 . 1 1675 0 -chrIV 713060 714920 HC_gene_1941_tx_8 1 - 713060 714920 . 1 1861 0 -chrIV 713060 715426 HC_gene_1941_tx_9 3 - 713060 715426 . 2 2188,68 0,2299 -chrIV 713193 713737 HC_gene_1941_tx_2 37 - 713193 713737 . 1 545 0 -chrIV 713193 713800 HC_gene_1941_tx_3 7 - 713193 713800 . 1 608 0 -chrIV 713193 713867 HC_gene_1941_tx_4 15 - 713193 713867 . 1 675 0 -chrIV 713193 713951 HC_gene_1941_tx_5 39 - 713193 713951 . 1 759 0 -chrIV 713193 714151 HC_gene_1941_tx_10 23 - 713193 714151 . 1 959 0 -chrIV 713193 714341 HC_gene_1941_tx_11 8 - 713193 714341 . 1 1149 0 -chrIV 713193 714399 HC_gene_1941_tx_12 15 - 713193 714399 . 1 1207 0 -chrIV 713193 714497 HC_gene_1941_tx_13 10 - 713193 714497 . 1 1305 0 -chrIV 713193 714656 HC_gene_1941_tx_14 5 - 713193 714656 . 1 1464 0 -chrIV 713193 714734 HC_gene_1941_tx_15 18 - 713193 714734 . 1 1542 0 -chrIV 713193 714920 HC_gene_1941_tx_16 3 - 713193 714920 . 1 1728 0 -chrIV 713193 715078 HC_gene_1941_tx_17 21 - 713193 715078 . 1 1886 0 -chrIV 713193 715078 HC_gene_1941_tx_18 1 - 713193 715078 . 2 1255,551 0,1335 -chrIV 713193 715078 HC_gene_1941_tx_19 1 - 713193 715078 . 2 801,1028 0,858 -chrIV 713193 715426 HC_gene_1941_tx_20 16 - 713193 715426 . 1 2234 0 -chrIV 713193 715426 HC_gene_1941_tx_21 56 - 713193 715426 . 2 2055,68 0,2166 -chrIV 713193 715426 HC_gene_1941_tx_22 1 - 713193 715426 . 2 1999,68 0,2166 -chrIV 713193 715426 HC_gene_1941_tx_23 1 - 713193 715426 . 3 965,1028,68 0,1027,2166 -chrIV 713193 715426 HC_gene_1941_tx_24 1 - 713193 715426 . 2 2055,72 0,2162 -chrIV 715494 716651 HC_gene_1942_tx_1 5 - 715494 716651 . 1 1158 0 -chrIV 715494 716651 HC_gene_1942_tx_2 1 - 715494 716651 . 2 261,853 0,305 -chrIV 715649 716651 HC_gene_1942_tx_3 4 - 715649 716651 . 1 1003 0 -chrIV 715687 716122 MC_gene_1327_tx_1 1 + 715687 716122 . 1 436 0 -chrIV 716713 718560 HC_gene_1943_tx_1 2 - 716713 718560 . 1 1848 0 -chrIV 718597 720425 HC_gene_1944_tx_1 1 - 718597 720425 . 1 1829 0 -chrIV 718674 719854 HC_gene_1328_tx_1 2 + 718674 719854 . 1 1181 0 -chrIV 718700 720425 HC_gene_1944_tx_2 8 - 718700 720425 . 1 1726 0 -chrIV 720227 720456 MC_gene_1329_tx_1 1 + 720227 720456 . 1 230 0 -chrIV 720621 720932 HC_gene_1330_tx_1 11 + 720621 720932 . 1 312 0 -chrIV 720621 721005 HC_gene_1330_tx_2 1 + 720621 721005 . 1 385 0 -chrIV 720791 721106 HC_gene_1945_tx_1 59 - 720791 721106 . 1 316 0 -chrIV 720791 721357 HC_gene_1945_tx_2 165 - 720791 721357 . 1 567 0 -chrIV 720791 721534 HC_gene_1945_tx_3 1144 - 720791 721534 . 1 744 0 -chrIV 720791 721534 HC_gene_1945_tx_4 1 - 720791 721534 . 2 538,123 0,621 -chrIV 720791 721534 HC_gene_1945_tx_5 1 - 720791 721534 . 2 359,318 0,426 -chrIV 720791 721534 HC_gene_1945_tx_6 1 - 720791 721534 . 2 275,366 0,378 -chrIV 720791 721534 HC_gene_1945_tx_7 1 - 720791 721534 . 2 420,75 0,669 -chrIV 720791 721534 HC_gene_1945_tx_8 1 - 720791 721534 . 2 122,569 0,175 -chrIV 720791 721534 HC_gene_1945_tx_9 1 - 720791 721534 . 2 75,576 0,168 -chrIV 720791 721534 HC_gene_1945_tx_10 1 - 720791 721534 . 2 485,219 0,525 -chrIV 720791 721534 HC_gene_1945_tx_11 1 - 720791 721534 . 2 295,342 0,402 -chrIV 720791 721847 HC_gene_1945_tx_12 1 - 720791 721847 . 1 1057 0 -chrIV 720949 721357 HC_gene_1945_tx_13 1 - 720949 721357 . 1 409 0 -chrIV 720953 721357 HC_gene_1945_tx_14 1 - 720953 721357 . 1 405 0 -chrIV 720953 721534 HC_gene_1945_tx_17 3 - 720953 721534 . 1 582 0 -chrIV 720955 721534 HC_gene_1945_tx_18 3 - 720955 721534 . 1 580 0 -chrIV 720957 721534 HC_gene_1945_tx_19 2 - 720957 721534 . 1 578 0 -chrIV 720959 721534 HC_gene_1945_tx_20 2 - 720959 721534 . 1 576 0 -chrIV 720960 721534 HC_gene_1945_tx_21 1 - 720960 721534 . 1 575 0 -chrIV 720961 721534 HC_gene_1945_tx_22 1 - 720961 721534 . 1 574 0 -chrIV 720968 721534 HC_gene_1945_tx_23 1 - 720968 721534 . 1 567 0 -chrIV 720972 721534 HC_gene_1945_tx_24 1 - 720972 721534 . 1 563 0 -chrIV 720975 721357 HC_gene_1945_tx_15 1 - 720975 721357 . 1 383 0 -chrIV 720976 721534 HC_gene_1945_tx_25 2 - 720976 721534 . 1 559 0 -chrIV 720978 721534 HC_gene_1945_tx_26 1 - 720978 721534 . 1 557 0 -chrIV 720980 721534 HC_gene_1945_tx_27 1 - 720980 721534 . 1 555 0 -chrIV 720992 721357 HC_gene_1945_tx_16 1 - 720992 721357 . 1 366 0 -chrIV 722295 722993 HC_gene_1331_tx_1 1 + 722295 722993 . 1 699 0 -chrIV 722912 723411 HC_gene_1946_tx_1 17 - 722912 723411 . 1 500 0 -chrIV 722912 723925 HC_gene_1946_tx_2 6 - 722912 723925 . 1 1014 0 -chrIV 722912 724206 HC_gene_1946_tx_3 1 - 722912 724206 . 1 1295 0 -chrIV 722912 724509 HC_gene_1946_tx_4 5 - 722912 724509 . 1 1598 0 -chrIV 722912 725106 HC_gene_1946_tx_5 2 - 722912 725106 . 1 2195 0 -chrIV 722912 725505 HC_gene_1946_tx_6 1 - 722912 725505 . 1 2594 0 -chrIV 722912 727153 HC_gene_1946_tx_7 2 - 722912 727153 . 1 4242 0 -chrIV 722912 727258 HC_gene_1946_tx_8 2 - 722912 727258 . 1 4347 0 -chrIV 722912 727499 HC_gene_1946_tx_9 2 - 722912 727499 . 1 4588 0 -chrIV 722912 727595 HC_gene_1946_tx_10 6 - 722912 727595 . 1 4684 0 -chrIV 722912 727595 HC_gene_1946_tx_11 1 - 722912 727595 . 3 678,694,2843 0,923,1841 -chrIV 723024 726289 MC_gene_1332_tx_1 1 + 723024 726289 . 1 3266 0 -chrIV 725181 726117 MC_gene_1332_tx_2 1 + 725181 726117 . 1 937 0 -chrIV 727864 728094 LC_gene_1333_tx_1 1 + 727864 728094 . 1 231 0 -chrIV 728173 730442 HC_gene_1334_tx_1 16 + 728173 730442 . 1 2270 0 -chrIV 728173 730972 HC_gene_1334_tx_2 1 + 728173 730972 . 1 2800 0 -chrIV 728262 730442 HC_gene_1334_tx_3 1 + 728262 730442 . 1 2181 0 -chrIV 728685 730442 HC_gene_1334_tx_4 2 + 728685 730442 . 1 1758 0 -chrIV 729778 730256 LC_gene_1947_tx_1 1 - 729778 730256 . 1 479 0 -chrIV 730564 730972 HC_gene_1334_tx_5 5 + 730564 730972 . 1 409 0 -chrIV 730564 733467 HC_gene_1334_tx_6 1 + 730564 733467 . 1 2904 0 -chrIV 730564 733470 HC_gene_1334_tx_7 2 + 730564 733470 . 1 2907 0 -chrIV 730564 733496 HC_gene_1334_tx_8 1 + 730564 733496 . 1 2933 0 -chrIV 730564 733499 HC_gene_1334_tx_9 2 + 730564 733499 . 1 2936 0 -chrIV 730564 733535 HC_gene_1334_tx_10 1 + 730564 733535 . 1 2972 0 -chrIV 730564 733552 HC_gene_1334_tx_11 1 + 730564 733552 . 1 2989 0 -chrIV 730564 733559 HC_gene_1334_tx_12 1 + 730564 733559 . 1 2996 0 -chrIV 730564 733560 HC_gene_1334_tx_13 1 + 730564 733560 . 1 2997 0 -chrIV 732976 733930 HC_gene_1948_tx_1 1 - 732976 733930 . 2 727,155 0,800 -chrIV 733446 733930 HC_gene_1948_tx_2 11 - 733446 733930 . 1 485 0 -chrIV 733446 733930 HC_gene_1948_tx_3 189 - 733446 733930 . 2 257,155 0,330 -chrIV 733446 733930 HC_gene_1948_tx_4 1 - 733446 733930 . 2 257,125 0,360 -chrIV 733446 733930 HC_gene_1948_tx_5 4 - 733446 733930 . 2 262,155 0,330 -chrIV 733446 733930 HC_gene_1948_tx_6 1 - 733446 733930 . 2 240,168 0,317 -chrIV 733446 733930 HC_gene_1948_tx_7 1 - 733446 733930 . 2 272,132 0,353 -chrIV 733446 733930 HC_gene_1948_tx_8 1 - 733446 733930 . 2 240,155 0,330 -chrIV 733656 734161 HC_gene_1335_tx_1 3 + 733656 734161 . 1 506 0 -chrIV 734123 734903 HC_gene_1336_tx_1 68 + 734123 734903 . 1 781 0 -chrIV 734123 735207 HC_gene_1336_tx_2 2 + 734123 735207 . 1 1085 0 -chrIV 734699 735220 HC_gene_1949_tx_1 9 - 734699 735220 . 1 522 0 -chrIV 734699 736058 HC_gene_1949_tx_2 3 - 734699 736058 . 1 1360 0 -chrIV 734699 736689 HC_gene_1949_tx_3 1 - 734699 736689 . 1 1991 0 -chrIV 734699 738602 HC_gene_1949_tx_4 1 - 734699 738602 . 1 3904 0 -chrIV 736177 738410 LC_gene_1337_tx_1 1 + 736177 738410 . 1 2234 0 -chrIV 739634 740046 HC_gene_1950_tx_1 3 - 739634 740046 . 1 413 0 -chrIV 740345 741586 HC_gene_1951_tx_1 2 - 740345 741586 . 1 1242 0 -chrIV 740345 741749 HC_gene_1951_tx_2 9 - 740345 741749 . 1 1405 0 -chrIV 740345 741831 HC_gene_1951_tx_3 2 - 740345 741831 . 1 1487 0 -chrIV 740406 741749 HC_gene_1951_tx_4 12 - 740406 741749 . 1 1344 0 -chrIV 740406 741749 HC_gene_1951_tx_5 1 - 740406 741749 . 2 238,1018 0,326 -chrIV 741871 744021 HC_gene_1952_tx_1 19 - 741871 744021 . 1 2151 0 -chrIV 742488 743417 LC_gene_1338_tx_1 1 + 742488 743417 . 1 930 0 -chrIV 743481 744017 MC_gene_1339_tx_1 1 + 743481 744017 . 1 537 0 -chrIV 743921 746241 HC_gene_1953_tx_1 1 - 743921 746241 . 1 2321 0 -chrIV 744180 744577 HC_gene_1953_tx_7 16 - 744180 744577 . 1 398 0 -chrIV 744180 746241 HC_gene_1953_tx_2 39 - 744180 746241 . 1 2062 0 -chrIV 744180 746241 HC_gene_1953_tx_3 1 - 744180 746241 . 2 308,481 0,1581 -chrIV 744180 746241 HC_gene_1953_tx_4 1 - 744180 746241 . 2 515,1323 0,739 -chrIV 744180 746241 HC_gene_1953_tx_5 1 - 744180 746241 . 2 605,1390 0,672 -chrIV 744180 746241 HC_gene_1953_tx_6 1 - 744180 746241 . 2 1306,546 0,1516 -chrIV 744253 745624 MC_gene_1340_tx_1 1 + 744253 745624 . 1 1372 0 -chrIV 745520 746241 HC_gene_1953_tx_8 1 - 745520 746241 . 1 722 0 -chrIV 745532 746241 HC_gene_1953_tx_9 1 - 745532 746241 . 1 710 0 -chrIV 746679 748557 HC_gene_1341_tx_1 34 + 746679 748557 . 1 1879 0 -chrIV 746679 748557 HC_gene_1341_tx_2 1 + 746679 748557 . 2 685,1031 0,848 -chrIV 746921 748557 HC_gene_1341_tx_3 15 + 746921 748557 . 1 1637 0 -chrIV 746921 748557 HC_gene_1341_tx_4 1 + 746921 748557 . 2 1458,131 0,1506 -chrIV 747291 748557 HC_gene_1341_tx_5 8 + 747291 748557 . 1 1267 0 -chrIV 747573 748557 HC_gene_1341_tx_6 21 + 747573 748557 . 1 985 0 -chrIV 747573 748557 HC_gene_1341_tx_7 1 + 747573 748557 . 2 366,142 0,843 -chrIV 747695 748557 HC_gene_1341_tx_8 10 + 747695 748557 . 1 863 0 -chrIV 747695 748557 HC_gene_1341_tx_9 1 + 747695 748557 . 2 295,491 0,372 -chrIV 748032 748557 HC_gene_1341_tx_10 13 + 748032 748557 . 1 526 0 -chrIV 748340 748921 MC_gene_1954_tx_1 1 - 748340 748921 . 1 582 0 -chrIV 748428 750914 MC_gene_1955_tx_1 1 - 748428 750914 . 1 2487 0 -chrIV 751182 753267 HC_gene_1342_tx_1 1 + 751182 753267 . 1 2086 0 -chrIV 751559 753161 HC_gene_1342_tx_2 5 + 751559 753161 . 1 1603 0 -chrIV 751559 753267 HC_gene_1342_tx_3 7 + 751559 753267 . 1 1709 0 -chrIV 753396 753935 HC_gene_1956_tx_1 9 - 753396 753935 . 1 540 0 -chrIV 753396 754057 HC_gene_1956_tx_2 4 - 753396 754057 . 1 662 0 -chrIV 753396 754443 HC_gene_1956_tx_7 7 - 753396 754443 . 1 1048 0 -chrIV 753396 754639 HC_gene_1956_tx_8 4 - 753396 754639 . 1 1244 0 -chrIV 753396 755144 HC_gene_1956_tx_11 28 - 753396 755144 . 1 1749 0 -chrIV 753396 755144 HC_gene_1956_tx_12 1 - 753396 755144 . 2 495,1170 0,579 -chrIV 753479 753935 HC_gene_1956_tx_3 1 - 753479 753935 . 1 457 0 -chrIV 753479 754057 HC_gene_1956_tx_4 1 - 753479 754057 . 1 579 0 -chrIV 753479 755144 HC_gene_1956_tx_13 2 - 753479 755144 . 1 1666 0 -chrIV 753531 753935 HC_gene_1956_tx_5 13 - 753531 753935 . 1 405 0 -chrIV 753531 754057 HC_gene_1956_tx_6 14 - 753531 754057 . 1 527 0 -chrIV 753531 754443 HC_gene_1956_tx_9 17 - 753531 754443 . 1 913 0 -chrIV 753531 754639 HC_gene_1956_tx_10 15 - 753531 754639 . 1 1109 0 -chrIV 753531 755144 HC_gene_1956_tx_14 48 - 753531 755144 . 1 1614 0 -chrIV 754417 755182 LC_gene_1343_tx_1 1 + 754417 755182 . 1 766 0 -chrIV 755723 759989 MC_gene_1344_tx_1 1 + 755723 759989 . 2 1732,1916 0,2351 -chrIV 761714 763926 HC_gene_1345_tx_1 1 + 761714 763926 . 1 2213 0 -chrIV 763063 763925 HC_gene_1345_tx_2 1 + 763063 763925 . 1 863 0 -chrIV 763063 763926 HC_gene_1345_tx_3 1 + 763063 763926 . 1 864 0 -chrIV 763903 764598 HC_gene_1957_tx_1 31 - 763903 764598 . 1 696 0 -chrIV 763903 764961 HC_gene_1957_tx_2 13 - 763903 764961 . 1 1059 0 -chrIV 763903 765051 HC_gene_1957_tx_3 7 - 763903 765051 . 1 1149 0 -chrIV 763903 765247 HC_gene_1957_tx_4 55 - 763903 765247 . 1 1345 0 -chrIV 763991 764445 MC_gene_1346_tx_1 1 + 763991 764445 . 1 455 0 -chrIV 764169 764535 MC_gene_1347_tx_1 1 + 764169 764535 . 1 367 0 -chrIV 764829 766549 HC_gene_1348_tx_1 1 + 764829 766549 . 1 1721 0 -chrIV 765669 766549 HC_gene_1348_tx_2 1 + 765669 766549 . 2 331,478 0,403 -chrIV 765681 766549 HC_gene_1348_tx_3 183 + 765681 766549 . 1 869 0 -chrIV 765681 766549 HC_gene_1348_tx_4 1 + 765681 766549 . 2 361,464 0,405 -chrIV 765994 766549 HC_gene_1348_tx_5 27 + 765994 766549 . 1 556 0 -chrIV 766067 766549 HC_gene_1348_tx_6 9 + 766067 766549 . 1 483 0 -chrIV 766633 767129 HC_gene_1958_tx_1 22 - 766633 767129 . 1 497 0 -chrIV 766633 767379 HC_gene_1958_tx_2 11 - 766633 767379 . 1 747 0 -chrIV 766633 767472 HC_gene_1958_tx_3 10 - 766633 767472 . 1 840 0 -chrIV 766633 767548 HC_gene_1958_tx_4 6 - 766633 767548 . 1 916 0 -chrIV 766633 768092 HC_gene_1958_tx_5 22 - 766633 768092 . 1 1460 0 -chrIV 766633 768092 HC_gene_1958_tx_6 1 - 766633 768092 . 2 965,315 0,1145 -chrIV 766633 768092 HC_gene_1958_tx_7 1 - 766633 768092 . 2 665,402 0,1058 -chrIV 768310 768482 MC_gene_1349_tx_1 1 + 768310 768482 . 1 173 0 -chrIV 768390 768637 HC_gene_1959_tx_1 275 - 768390 768637 . 1 248 0 -chrIV 768390 768784 HC_gene_1959_tx_2 638 - 768390 768784 . 1 395 0 -chrIV 768390 768873 HC_gene_1959_tx_3 232 - 768390 768873 . 1 484 0 -chrIV 768390 769038 HC_gene_1959_tx_4 4174 - 768390 769038 . 1 649 0 -chrIV 769192 769465 MC_gene_1350_tx_1 1 + 769192 769465 . 1 274 0 -chrIV 769490 770033 HC_gene_1351_tx_1 287 + 769490 770033 . 1 544 0 -chrIV 769667 770033 HC_gene_1351_tx_2 8 + 769667 770033 . 1 367 0 -chrIV 769741 770189 MC_gene_1960_tx_1 1 - 769741 770189 . 1 449 0 -chrIV 769751 770254 MC_gene_1960_tx_2 1 - 769751 770254 . 1 504 0 -chrIV 770254 771410 LC_gene_1961_tx_1 1 - 770254 771410 . 1 1157 0 -chrIV 770321 771581 HC_gene_1352_tx_1 851 + 770321 771581 . 1 1261 0 -chrIV 770321 771581 HC_gene_1352_tx_2 1 + 770321 771581 . 2 502,144 0,1117 -chrIV 770321 771581 HC_gene_1352_tx_3 1 + 770321 771581 . 2 870,297 0,964 -chrIV 770321 771581 HC_gene_1352_tx_4 1 + 770321 771581 . 2 488,712 0,549 -chrIV 770321 771581 HC_gene_1352_tx_5 1 + 770321 771581 . 2 1148,46 0,1215 -chrIV 770321 771581 HC_gene_1352_tx_6 1 + 770321 771581 . 2 91,1106 0,155 -chrIV 770321 771581 HC_gene_1352_tx_7 1 + 770321 771581 . 2 556,604 0,657 -chrIV 770321 771581 HC_gene_1352_tx_8 1 + 770321 771581 . 2 384,798 0,463 -chrIV 770321 771581 HC_gene_1352_tx_9 1 + 770321 771581 . 2 766,433 0,828 -chrIV 770321 771581 HC_gene_1352_tx_10 1 + 770321 771581 . 2 625,543 0,718 -chrIV 770321 771581 HC_gene_1352_tx_11 1 + 770321 771581 . 2 762,442 0,819 -chrIV 770321 771581 HC_gene_1352_tx_12 1 + 770321 771581 . 2 384,805 0,456 -chrIV 770657 771581 HC_gene_1352_tx_13 91 + 770657 771581 . 1 925 0 -chrIV 770657 771581 HC_gene_1352_tx_14 1 + 770657 771581 . 2 154,588 0,337 -chrIV 770778 771581 HC_gene_1352_tx_15 207 + 770778 771581 . 1 804 0 -chrIV 770778 771581 HC_gene_1352_tx_16 1 + 770778 771581 . 2 656,69 0,735 -chrIV 770778 771581 HC_gene_1352_tx_17 1 + 770778 771581 . 2 646,47 0,757 -chrIV 770920 771581 HC_gene_1352_tx_18 80 + 770920 771581 . 1 662 0 -chrIV 770920 771581 HC_gene_1352_tx_19 1 + 770920 771581 . 2 514,64 0,598 -chrIV 771779 775823 HC_gene_1353_tx_1 4 + 771779 775823 . 1 4045 0 -chrIV 771779 775823 HC_gene_1353_tx_2 1 + 771779 775823 . 2 984,2916 0,1129 -chrIV 775120 775823 HC_gene_1353_tx_3 4 + 775120 775823 . 1 704 0 -chrIV 775984 776437 HC_gene_1354_tx_1 2 + 775984 776437 . 1 454 0 -chrIV 776458 777414 MC_gene_1355_tx_1 1 + 776458 777414 . 1 957 0 -chrIV 778808 779005 LC_gene_1962_tx_1 1 - 778808 779005 . 1 198 0 -chrIV 779019 779750 HC_gene_1356_tx_1 1 + 779019 779750 . 1 732 0 -chrIV 779019 780290 HC_gene_1356_tx_2 49 + 779019 780290 . 1 1272 0 -chrIV 779019 780393 HC_gene_1356_tx_3 23 + 779019 780393 . 1 1375 0 -chrIV 779204 780290 HC_gene_1356_tx_4 8 + 779204 780290 . 1 1087 0 -chrIV 779204 780393 HC_gene_1356_tx_5 1 + 779204 780393 . 2 653,415 0,775 -chrIV 779204 780393 HC_gene_1356_tx_6 2 + 779204 780393 . 1 1190 0 -chrIV 779374 780290 HC_gene_1356_tx_7 3 + 779374 780290 . 1 917 0 -chrIV 779374 780393 HC_gene_1356_tx_8 5 + 779374 780393 . 1 1020 0 -chrIV 779502 780290 HC_gene_1356_tx_9 10 + 779502 780290 . 1 789 0 -chrIV 779502 780393 HC_gene_1356_tx_10 10 + 779502 780393 . 1 892 0 -chrIV 779820 780290 HC_gene_1356_tx_11 9 + 779820 780290 . 1 471 0 -chrIV 779820 780393 HC_gene_1356_tx_12 4 + 779820 780393 . 1 574 0 -chrIV 780177 780991 HC_gene_1963_tx_1 14 - 780177 780991 . 1 815 0 -chrIV 780177 781096 HC_gene_1963_tx_2 3 - 780177 781096 . 1 920 0 -chrIV 780177 781233 HC_gene_1963_tx_3 60 - 780177 781233 . 1 1057 0 -chrIV 780177 781233 HC_gene_1963_tx_4 1 - 780177 781233 . 2 836,75 0,982 -chrIV 781349 782056 HC_gene_1357_tx_1 89 + 781349 782056 . 1 708 0 -chrIV 781476 782056 HC_gene_1357_tx_2 9 + 781476 782056 . 1 581 0 -chrIV 781576 782056 HC_gene_1357_tx_3 25 + 781576 782056 . 1 481 0 -chrIV 781865 784258 HC_gene_1964_tx_1 19 - 781865 784258 . 1 2394 0 -chrIV 781865 784258 HC_gene_1964_tx_2 1 - 781865 784258 . 2 1066,1259 0,1135 -chrIV 784833 786274 HC_gene_1358_tx_1 53 + 784833 786274 . 1 1442 0 -chrIV 784833 786274 HC_gene_1358_tx_2 1 + 784833 786274 . 2 734,559 0,883 -chrIV 784833 786854 HC_gene_1358_tx_3 1 + 784833 786854 . 1 2022 0 -chrIV 786208 787963 HC_gene_1965_tx_1 1 - 786208 787963 . 1 1756 0 -chrIV 786208 789295 HC_gene_1965_tx_2 4 - 786208 789295 . 1 3088 0 -chrIV 789413 790190 HC_gene_1359_tx_1 179 + 789413 790190 . 1 778 0 -chrIV 789546 790190 HC_gene_1359_tx_2 20 + 789546 790190 . 1 645 0 -chrIV 789605 790190 HC_gene_1359_tx_3 7 + 789605 790190 . 1 586 0 -chrIV 789674 790190 HC_gene_1359_tx_4 8 + 789674 790190 . 1 517 0 -chrIV 789751 790190 HC_gene_1359_tx_5 4 + 789751 790190 . 1 440 0 -chrIV 790287 791896 HC_gene_1360_tx_1 1 + 790287 791896 . 1 1610 0 -chrIV 790287 792050 HC_gene_1360_tx_2 9 + 790287 792050 . 1 1764 0 -chrIV 790287 792050 HC_gene_1360_tx_3 1 + 790287 792050 . 2 949,774 0,990 -chrIV 790287 792128 HC_gene_1360_tx_4 1 + 790287 792128 . 1 1842 0 -chrIV 790495 792050 HC_gene_1360_tx_5 1 + 790495 792050 . 1 1556 0 -chrIV 790712 791898 HC_gene_1360_tx_6 1 + 790712 791898 . 1 1187 0 -chrIV 790712 792050 HC_gene_1360_tx_7 4 + 790712 792050 . 1 1339 0 -chrIV 791032 792050 HC_gene_1360_tx_8 1 + 791032 792050 . 1 1019 0 -chrIV 791150 792050 HC_gene_1360_tx_9 1 + 791150 792050 . 1 901 0 -chrIV 791537 792050 HC_gene_1360_tx_10 2 + 791537 792050 . 1 514 0 -chrIV 791537 792128 HC_gene_1360_tx_11 1 + 791537 792128 . 1 592 0 -chrIV 791825 792505 HC_gene_1966_tx_1 1 - 791825 792505 . 1 681 0 -chrIV 791950 792505 HC_gene_1966_tx_2 6 - 791950 792505 . 1 556 0 -chrIV 791950 793137 HC_gene_1966_tx_3 1 - 791950 793137 . 1 1188 0 -chrIV 791950 793427 HC_gene_1966_tx_4 5 - 791950 793427 . 1 1478 0 -chrIV 791950 794123 HC_gene_1966_tx_7 1 - 791950 794123 . 1 2174 0 -chrIV 791950 794256 HC_gene_1966_tx_8 7 - 791950 794256 . 1 2307 0 -chrIV 791950 794256 HC_gene_1966_tx_9 1 - 791950 794256 . 2 1348,904 0,1403 -chrIV 791950 794256 HC_gene_1966_tx_10 1 - 791950 794256 . 2 1764,388 0,1919 -chrIV 792103 792505 HC_gene_1966_tx_12 6 - 792103 792505 . 1 403 0 -chrIV 792103 793137 HC_gene_1966_tx_5 1 - 792103 793137 . 1 1035 0 -chrIV 792103 794256 HC_gene_1966_tx_11 1 - 792103 794256 . 1 2154 0 -chrIV 792236 792505 HC_gene_1966_tx_13 1 - 792236 792505 . 1 270 0 -chrIV 792236 793137 HC_gene_1966_tx_6 1 - 792236 793137 . 1 902 0 -chrIV 792236 793752 HC_gene_1966_tx_14 1 - 792236 793752 . 2 43,694 0,823 -chrIV 794519 795113 MC_gene_1361_tx_1 1 + 794519 795113 . 1 595 0 -chrIV 795994 796429 HC_gene_1967_tx_1 38 - 795994 796429 . 1 436 0 -chrIV 795994 797243 HC_gene_1967_tx_2 1 - 795994 797243 . 2 473,233 0,1017 -chrIV 795994 797243 HC_gene_1967_tx_3 8 - 795994 797243 . 1 1250 0 -chrIV 795994 797303 HC_gene_1967_tx_4 3 - 795994 797303 . 1 1310 0 -chrIV 795994 797303 HC_gene_1967_tx_5 1 - 795994 797303 . 2 511,727 0,583 -chrIV 795994 798517 HC_gene_1967_tx_6 1 - 795994 798517 . 2 1081,1365 0,1159 -chrIV 795994 798517 HC_gene_1967_tx_7 1 - 795994 798517 . 1 2524 0 -chrIV 795994 798799 HC_gene_1967_tx_8 2 - 795994 798799 . 1 2806 0 -chrIV 795994 799376 HC_gene_1967_tx_9 3 - 795994 799376 . 1 3383 0 -chrIV 795994 800461 HC_gene_1967_tx_10 1 - 795994 800461 . 1 4468 0 -chrIV 795994 800547 HC_gene_1967_tx_11 1 - 795994 800547 . 1 4554 0 -chrIV 795994 800547 HC_gene_1967_tx_12 1 - 795994 800547 . 2 1530,2901 0,1653 -chrIV 795994 800642 HC_gene_1967_tx_13 2 - 795994 800642 . 1 4649 0 -chrIV 795994 801891 HC_gene_1967_tx_14 1 - 795994 801891 . 2 57,5740 0,158 -chrIV 795994 802048 HC_gene_1967_tx_15 2 - 795994 802048 . 1 6055 0 -chrIV 795994 802246 HC_gene_1967_tx_16 1 - 795994 802246 . 1 6253 0 -chrIV 795994 802410 HC_gene_1967_tx_17 5 - 795994 802410 . 1 6417 0 -chrIV 803073 803890 MC_gene_1968_tx_1 1 - 803073 803890 . 1 818 0 -chrIV 803875 805813 HC_gene_1362_tx_1 4 + 803875 805813 . 1 1939 0 -chrIV 803875 805953 HC_gene_1362_tx_2 1 + 803875 805953 . 1 2079 0 -chrIV 803875 805956 HC_gene_1362_tx_3 1 + 803875 805956 . 1 2082 0 -chrIV 803875 805958 HC_gene_1362_tx_4 2 + 803875 805958 . 1 2084 0 -chrIV 803875 806113 HC_gene_1362_tx_5 1 + 803875 806113 . 1 2239 0 -chrIV 803875 806576 HC_gene_1362_tx_6 1 + 803875 806576 . 1 2702 0 -chrIV 803962 805813 HC_gene_1362_tx_7 2 + 803962 805813 . 1 1852 0 -chrIV 803962 805930 HC_gene_1362_tx_8 1 + 803962 805930 . 1 1969 0 -chrIV 803962 806113 HC_gene_1362_tx_9 2 + 803962 806113 . 1 2152 0 -chrIV 803962 806576 HC_gene_1362_tx_10 1 + 803962 806576 . 1 2615 0 -chrIV 804079 805953 HC_gene_1362_tx_11 1 + 804079 805953 . 1 1875 0 -chrIV 804846 805952 HC_gene_1362_tx_12 1 + 804846 805952 . 1 1107 0 -chrIV 805304 805813 HC_gene_1362_tx_13 1 + 805304 805813 . 1 510 0 -chrIV 805304 806113 HC_gene_1362_tx_14 1 + 805304 806113 . 1 810 0 -chrIV 806487 807788 MC_gene_1969_tx_1 1 - 806487 807788 . 1 1302 0 -chrIV 806535 806576 HC_gene_1362_tx_15 2 + 806535 806576 . 1 42 0 -chrIV 807062 807866 MC_gene_1363_tx_1 1 + 807062 807866 . 1 805 0 -chrIV 807227 807836 MC_gene_1363_tx_2 1 + 807227 807836 . 1 610 0 -chrIV 807283 807835 MC_gene_1363_tx_3 1 + 807283 807835 . 1 553 0 -chrIV 807492 807863 MC_gene_1363_tx_4 1 + 807492 807863 . 1 372 0 -chrIV 807745 808011 MC_gene_1970_tx_1 1 - 807745 808011 . 1 267 0 -chrIV 808270 810559 HC_gene_1364_tx_1 81 + 808270 810559 . 1 2290 0 -chrIV 808270 810559 HC_gene_1364_tx_2 1 + 808270 810559 . 2 55,1748 0,542 -chrIV 808270 810559 HC_gene_1364_tx_3 1 + 808270 810559 . 2 66,1831 0,459 -chrIV 808270 810559 HC_gene_1364_tx_4 1 + 808270 810559 . 2 1295,886 0,1404 -chrIV 808270 810559 HC_gene_1364_tx_5 1 + 808270 810559 . 2 2068,108 0,2182 -chrIV 808270 810559 HC_gene_1364_tx_6 1 + 808270 810559 . 2 912,1329 0,961 -chrIV 808270 810559 HC_gene_1364_tx_7 1 + 808270 810559 . 2 1428,775 0,1515 -chrIV 808270 810559 HC_gene_1364_tx_8 1 + 808270 810559 . 2 77,1790 0,500 -chrIV 808270 810559 HC_gene_1364_tx_9 1 + 808270 810559 . 2 505,1720 0,570 -chrIV 808270 810559 HC_gene_1364_tx_10 1 + 808270 810559 . 2 2089,139 0,2151 -chrIV 808270 810559 HC_gene_1364_tx_11 1 + 808270 810559 . 2 1174,1030 0,1260 -chrIV 808556 810432 HC_gene_1364_tx_12 1 + 808556 810432 . 1 1877 0 -chrIV 808556 810559 HC_gene_1364_tx_13 36 + 808556 810559 . 1 2004 0 -chrIV 808556 810559 HC_gene_1364_tx_14 1 + 808556 810559 . 2 1014,928 0,1076 -chrIV 808556 810559 HC_gene_1364_tx_15 1 + 808556 810559 . 2 957,971 0,1033 -chrIV 808556 810559 HC_gene_1364_tx_16 1 + 808556 810559 . 2 1094,816 0,1188 -chrIV 808556 810559 HC_gene_1364_tx_17 1 + 808556 810559 . 2 760,1169 0,835 -chrIV 808669 810559 HC_gene_1364_tx_18 1 + 808669 810559 . 1 1891 0 -chrIV 808786 810559 HC_gene_1364_tx_19 26 + 808786 810559 . 1 1774 0 -chrIV 808786 810559 HC_gene_1364_tx_20 1 + 808786 810559 . 2 505,953 0,821 -chrIV 808912 810559 HC_gene_1364_tx_21 12 + 808912 810559 . 1 1648 0 -chrIV 809137 810559 HC_gene_1364_tx_22 26 + 809137 810559 . 1 1423 0 -chrIV 809137 810559 HC_gene_1364_tx_23 1 + 809137 810559 . 2 143,1069 0,354 -chrIV 809873 810559 HC_gene_1364_tx_24 33 + 809873 810559 . 1 687 0 -chrIV 810415 810952 HC_gene_1971_tx_1 7 - 810415 810952 . 1 538 0 -chrIV 810415 811355 HC_gene_1971_tx_2 4 - 810415 811355 . 1 941 0 -chrIV 810415 811669 HC_gene_1971_tx_3 8 - 810415 811669 . 1 1255 0 -chrIV 811850 812162 LC_gene_1972_tx_1 1 - 811850 812162 . 1 313 0 -chrIV 812086 813023 HC_gene_1365_tx_1 283 + 812086 813023 . 1 938 0 -chrIV 812086 813221 HC_gene_1365_tx_2 9 + 812086 813221 . 1 1136 0 -chrIV 812406 813023 HC_gene_1365_tx_3 2 + 812406 813023 . 1 618 0 -chrIV 812503 813023 HC_gene_1365_tx_4 80 + 812503 813023 . 1 521 0 -chrIV 812503 813221 HC_gene_1365_tx_5 5 + 812503 813221 . 1 719 0 -chrIV 812999 814200 HC_gene_1973_tx_1 13 - 812999 814200 . 1 1202 0 -chrIV 813073 813977 HC_gene_1973_tx_2 5 - 813073 813977 . 1 905 0 -chrIV 813073 814200 HC_gene_1973_tx_3 51 - 813073 814200 . 1 1128 0 -chrIV 813073 814200 HC_gene_1973_tx_4 1 - 813073 814200 . 2 367,713 0,415 -chrIV 813073 814200 HC_gene_1973_tx_5 1 - 813073 814200 . 2 276,657 0,471 -chrIV 813157 813977 HC_gene_1973_tx_6 1 - 813157 813977 . 1 821 0 -chrIV 813157 814200 HC_gene_1973_tx_7 17 - 813157 814200 . 1 1044 0 -chrIV 814422 816614 HC_gene_1366_tx_1 1 + 814422 816614 . 2 1185,892 0,1301 -chrIV 814422 816614 HC_gene_1366_tx_2 11 + 814422 816614 . 1 2193 0 -chrIV 814422 816614 HC_gene_1366_tx_3 1 + 814422 816614 . 2 1423,661 0,1532 -chrIV 814422 816667 HC_gene_1366_tx_4 7 + 814422 816667 . 1 2246 0 -chrIV 814574 816614 HC_gene_1366_tx_5 1 + 814574 816614 . 1 2041 0 -chrIV 814574 816667 HC_gene_1366_tx_6 2 + 814574 816667 . 1 2094 0 -chrIV 814692 816614 HC_gene_1366_tx_7 1 + 814692 816614 . 1 1923 0 -chrIV 814692 816667 HC_gene_1366_tx_8 1 + 814692 816667 . 1 1976 0 -chrIV 814692 816891 HC_gene_1366_tx_9 2 + 814692 816891 . 1 2200 0 -chrIV 814790 816667 HC_gene_1366_tx_10 1 + 814790 816667 . 1 1878 0 -chrIV 814844 816614 HC_gene_1366_tx_11 1 + 814844 816614 . 1 1771 0 -chrIV 814844 816667 HC_gene_1366_tx_12 1 + 814844 816667 . 1 1824 0 -chrIV 814844 816891 HC_gene_1366_tx_13 1 + 814844 816891 . 1 2048 0 -chrIV 815194 816614 HC_gene_1366_tx_14 1 + 815194 816614 . 1 1421 0 -chrIV 815194 816667 HC_gene_1366_tx_15 5 + 815194 816667 . 1 1474 0 -chrIV 815194 816891 HC_gene_1366_tx_16 1 + 815194 816891 . 1 1698 0 -chrIV 815756 816614 HC_gene_1366_tx_17 4 + 815756 816614 . 1 859 0 -chrIV 815756 816667 HC_gene_1366_tx_18 1 + 815756 816667 . 1 912 0 -chrIV 815913 816614 HC_gene_1366_tx_19 1 + 815913 816614 . 1 702 0 -chrIV 815913 816667 HC_gene_1366_tx_20 3 + 815913 816667 . 1 755 0 -chrIV 815913 816891 HC_gene_1366_tx_21 1 + 815913 816891 . 1 979 0 -chrIV 816063 816778 LC_gene_1974_tx_1 1 - 816063 816778 . 1 716 0 -chrIV 816779 817670 HC_gene_1367_tx_1 248 + 816779 817670 . 1 892 0 -chrIV 817025 817670 HC_gene_1367_tx_2 44 + 817025 817670 . 1 646 0 -chrIV 817361 817670 HC_gene_1367_tx_3 34 + 817361 817670 . 1 310 0 -chrIV 817389 817726 MC_gene_1975_tx_1 1 - 817389 817726 . 1 338 0 -chrIV 817460 817670 HC_gene_1367_tx_4 3 + 817460 817670 . 1 211 0 -chrIV 817847 818569 HC_gene_1368_tx_1 2 + 817847 818569 . 1 723 0 -chrIV 817847 818699 HC_gene_1368_tx_2 292 + 817847 818699 . 1 853 0 -chrIV 818088 818699 HC_gene_1368_tx_3 28 + 818088 818699 . 1 612 0 -chrIV 818349 818699 HC_gene_1368_tx_4 23 + 818349 818699 . 1 351 0 -chrIV 818581 819192 HC_gene_1976_tx_1 56 - 818581 819192 . 1 612 0 -chrIV 819334 819879 HC_gene_1369_tx_1 1 + 819334 819879 . 1 546 0 -chrIV 819334 819881 HC_gene_1369_tx_2 1 + 819334 819881 . 1 548 0 -chrIV 819334 820873 HC_gene_1369_tx_3 14 + 819334 820873 . 1 1540 0 -chrIV 819334 820873 HC_gene_1369_tx_4 1 + 819334 820873 . 2 276,1073 0,467 -chrIV 819644 820973 MC_gene_1977_tx_1 1 - 819644 820973 . 1 1330 0 -chrIV 821148 824462 HC_gene_1370_tx_1 1 + 821148 824462 . 1 3315 0 -chrIV 821148 825826 HC_gene_1370_tx_2 1 + 821148 825826 . 1 4679 0 -chrIV 825722 827368 HC_gene_1978_tx_1 14 - 825722 827368 . 1 1647 0 -chrIV 825722 827368 HC_gene_1978_tx_2 1 - 825722 827368 . 2 703,886 0,761 -chrIV 825722 827368 HC_gene_1978_tx_3 1 - 825722 827368 . 2 1133,207 0,1440 -chrIV 827551 829121 HC_gene_1371_tx_1 1 + 827551 829121 . 2 840,660 0,911 -chrIV 827575 829121 HC_gene_1371_tx_2 1 + 827575 829121 . 3 608,89,679 0,675,868 -chrIV 827575 829121 HC_gene_1371_tx_3 1 + 827575 829121 . 2 926,556 0,991 -chrIV 827575 829121 HC_gene_1371_tx_4 38 + 827575 829121 . 1 1547 0 -chrIV 827575 829419 HC_gene_1371_tx_5 4 + 827575 829419 . 1 1845 0 -chrIV 827698 829121 HC_gene_1371_tx_6 3 + 827698 829121 . 1 1424 0 -chrIV 828289 829121 HC_gene_1371_tx_7 8 + 828289 829121 . 1 833 0 -chrIV 828373 829121 HC_gene_1371_tx_8 12 + 828373 829121 . 1 749 0 -chrIV 828567 829121 HC_gene_1371_tx_9 8 + 828567 829121 . 1 555 0 -chrIV 828567 829419 HC_gene_1371_tx_10 1 + 828567 829419 . 1 853 0 -chrIV 828774 829121 HC_gene_1371_tx_11 14 + 828774 829121 . 1 348 0 -chrIV 828774 829419 HC_gene_1371_tx_12 1 + 828774 829419 . 1 646 0 -chrIV 828917 829369 MC_gene_1979_tx_1 1 - 828917 829369 . 1 453 0 -chrIV 829095 829637 MC_gene_1980_tx_1 1 - 829095 829637 . 1 543 0 -chrIV 829569 830325 HC_gene_1372_tx_1 45 + 829569 830325 . 1 757 0 -chrIV 829569 830490 HC_gene_1372_tx_2 9 + 829569 830490 . 1 922 0 -chrIV 830471 831162 HC_gene_1981_tx_1 17 - 830471 831162 . 1 692 0 -chrIV 830471 831543 HC_gene_1981_tx_2 65 - 830471 831543 . 1 1073 0 -chrIV 830471 831543 HC_gene_1981_tx_3 1 - 830471 831543 . 2 428,525 0,548 -chrIV 830471 831543 HC_gene_1981_tx_4 1 - 830471 831543 . 2 526,491 0,582 -chrIV 830471 831543 HC_gene_1981_tx_5 1 - 830471 831543 . 3 311,0,286 0,512,787 -chrIV 831732 832576 HC_gene_1982_tx_1 18 - 831732 832576 . 1 845 0 -chrIV 831791 832856 MC_gene_1373_tx_1 1 + 831791 832856 . 1 1066 0 -chrIV 831836 832756 MC_gene_1373_tx_2 1 + 831836 832756 . 1 921 0 -chrIV 832061 832538 MC_gene_1373_tx_3 1 + 832061 832538 . 1 478 0 -chrIV 832740 833160 HC_gene_1983_tx_1 18 - 832740 833160 . 1 421 0 -chrIV 832740 833794 HC_gene_1983_tx_2 4 - 832740 833794 . 1 1055 0 -chrIV 832740 835061 HC_gene_1983_tx_3 3 - 832740 835061 . 1 2322 0 -chrIV 832740 835547 HC_gene_1983_tx_4 12 - 832740 835547 . 1 2808 0 -chrIV 832740 835709 HC_gene_1983_tx_5 1 - 832740 835709 . 1 2970 0 -chrIV 836130 838174 HC_gene_1374_tx_1 1 + 836130 838174 . 1 2045 0 -chrIV 836130 838230 HC_gene_1374_tx_2 2 + 836130 838230 . 1 2101 0 -chrIV 836366 838174 HC_gene_1374_tx_3 40 + 836366 838174 . 1 1809 0 -chrIV 836366 838174 HC_gene_1374_tx_4 1 + 836366 838174 . 2 904,821 0,988 -chrIV 836366 838230 HC_gene_1374_tx_5 184 + 836366 838230 . 1 1865 0 -chrIV 836366 838230 HC_gene_1374_tx_6 1 + 836366 838230 . 2 927,876 0,989 -chrIV 836366 838230 HC_gene_1374_tx_7 1 + 836366 838230 . 2 1296,280 0,1585 -chrIV 836366 838230 HC_gene_1374_tx_8 1 + 836366 838230 . 2 1088,716 0,1149 -chrIV 836366 838230 HC_gene_1374_tx_9 1 + 836366 838230 . 2 976,799 0,1066 -chrIV 836366 838230 HC_gene_1374_tx_10 1 + 836366 838230 . 2 1096,712 0,1153 -chrIV 836366 838230 HC_gene_1374_tx_11 1 + 836366 838230 . 2 1502,257 0,1608 -chrIV 836595 838174 HC_gene_1374_tx_12 2 + 836595 838174 . 1 1580 0 -chrIV 836595 838230 HC_gene_1374_tx_13 9 + 836595 838230 . 1 1636 0 -chrIV 836683 838174 HC_gene_1374_tx_14 2 + 836683 838174 . 1 1492 0 -chrIV 836683 838230 HC_gene_1374_tx_15 7 + 836683 838230 . 1 1548 0 -chrIV 836954 838174 HC_gene_1374_tx_16 4 + 836954 838174 . 1 1221 0 -chrIV 836954 838230 HC_gene_1374_tx_17 19 + 836954 838230 . 1 1277 0 -chrIV 837055 838174 HC_gene_1374_tx_18 1 + 837055 838174 . 1 1120 0 -chrIV 837055 838230 HC_gene_1374_tx_19 6 + 837055 838230 . 1 1176 0 -chrIV 837111 838174 HC_gene_1374_tx_20 3 + 837111 838174 . 1 1064 0 -chrIV 837111 838230 HC_gene_1374_tx_21 6 + 837111 838230 . 1 1120 0 -chrIV 837198 838174 HC_gene_1374_tx_22 4 + 837198 838174 . 1 977 0 -chrIV 837198 838230 HC_gene_1374_tx_23 11 + 837198 838230 . 1 1033 0 -chrIV 837295 838174 HC_gene_1374_tx_24 1 + 837295 838174 . 1 880 0 -chrIV 837295 838230 HC_gene_1374_tx_25 6 + 837295 838230 . 1 936 0 -chrIV 837378 838174 HC_gene_1374_tx_26 6 + 837378 838174 . 1 797 0 -chrIV 837378 838230 HC_gene_1374_tx_27 16 + 837378 838230 . 1 853 0 -chrIV 837504 838174 HC_gene_1374_tx_28 5 + 837504 838174 . 1 671 0 -chrIV 837504 838230 HC_gene_1374_tx_29 16 + 837504 838230 . 1 727 0 -chrIV 837605 838174 HC_gene_1374_tx_30 4 + 837605 838174 . 1 570 0 -chrIV 837605 838230 HC_gene_1374_tx_31 20 + 837605 838230 . 1 626 0 -chrIV 837663 838174 HC_gene_1374_tx_32 3 + 837663 838174 . 1 512 0 -chrIV 837663 838230 HC_gene_1374_tx_33 12 + 837663 838230 . 1 568 0 -chrIV 838349 840533 HC_gene_1375_tx_1 31 + 838349 840533 . 1 2185 0 -chrIV 838349 840533 HC_gene_1375_tx_2 1 + 838349 840533 . 2 1329,807 0,1378 -chrIV 838554 840533 HC_gene_1375_tx_3 6 + 838554 840533 . 1 1980 0 -chrIV 838972 840533 HC_gene_1375_tx_4 10 + 838972 840533 . 1 1562 0 -chrIV 839169 840533 HC_gene_1375_tx_5 3 + 839169 840533 . 1 1365 0 -chrIV 840165 840533 HC_gene_1375_tx_6 28 + 840165 840533 . 1 369 0 -chrIV 840319 840968 HC_gene_1984_tx_1 2 - 840319 840968 . 1 650 0 -chrIV 840319 841364 HC_gene_1984_tx_2 1 - 840319 841364 . 1 1046 0 -chrIV 840319 841653 HC_gene_1984_tx_7 2 - 840319 841653 . 1 1335 0 -chrIV 840319 841653 HC_gene_1984_tx_8 1 - 840319 841653 . 2 1036,237 0,1098 -chrIV 840319 842020 HC_gene_1984_tx_9 5 - 840319 842020 . 1 1702 0 -chrIV 840401 841292 HC_gene_1984_tx_3 3 - 840401 841292 . 1 892 0 -chrIV 840401 841364 HC_gene_1984_tx_4 6 - 840401 841364 . 1 964 0 -chrIV 840401 841653 HC_gene_1984_tx_10 2 - 840401 841653 . 1 1253 0 -chrIV 840401 841856 HC_gene_1984_tx_11 2 - 840401 841856 . 1 1456 0 -chrIV 840401 842020 HC_gene_1984_tx_12 19 - 840401 842020 . 1 1620 0 -chrIV 840512 840968 HC_gene_1984_tx_20 22 - 840512 840968 . 1 457 0 -chrIV 840512 841292 HC_gene_1984_tx_5 15 - 840512 841292 . 1 781 0 -chrIV 840512 841364 HC_gene_1984_tx_6 17 - 840512 841364 . 1 853 0 -chrIV 840512 841653 HC_gene_1984_tx_13 25 - 840512 841653 . 1 1142 0 -chrIV 840512 841653 HC_gene_1984_tx_14 1 - 840512 841653 . 2 734,334 0,808 -chrIV 840512 841856 HC_gene_1984_tx_15 8 - 840512 841856 . 1 1345 0 -chrIV 840512 842020 HC_gene_1984_tx_16 125 - 840512 842020 . 1 1509 0 -chrIV 840512 842020 HC_gene_1984_tx_17 1 - 840512 842020 . 2 25,1430 0,79 -chrIV 840512 842020 HC_gene_1984_tx_18 1 - 840512 842020 . 2 535,920 0,589 -chrIV 840512 842020 HC_gene_1984_tx_19 1 - 840512 842020 . 2 270,836 0,673 -chrIV 842321 843558 HC_gene_1376_tx_1 12 + 842321 843558 . 1 1238 0 -chrIV 843475 844935 HC_gene_1985_tx_1 22 - 843475 844935 . 1 1461 0 -chrIV 843853 845266 LC_gene_1377_tx_1 1 + 843853 845266 . 1 1414 0 -chrIV 845481 845878 HC_gene_1378_tx_1 3 + 845481 845878 . 1 398 0 -chrIV 845481 846021 HC_gene_1378_tx_2 1 + 845481 846021 . 1 541 0 -chrIV 845800 846298 HC_gene_1986_tx_1 28 - 845800 846298 . 1 499 0 -chrIV 845800 846640 HC_gene_1986_tx_2 4 - 845800 846640 . 1 841 0 -chrIV 845800 847019 HC_gene_1986_tx_3 4 - 845800 847019 . 1 1220 0 -chrIV 845800 847215 HC_gene_1986_tx_4 8 - 845800 847215 . 1 1416 0 -chrIV 845800 847349 HC_gene_1986_tx_5 8 - 845800 847349 . 1 1550 0 -chrIV 845800 847615 HC_gene_1986_tx_6 9 - 845800 847615 . 1 1816 0 -chrIV 845800 847737 HC_gene_1986_tx_7 8 - 845800 847737 . 1 1938 0 -chrIV 845800 847970 HC_gene_1986_tx_8 34 - 845800 847970 . 1 2171 0 -chrIV 845800 847970 HC_gene_1986_tx_9 1 - 845800 847970 . 2 943,1116 0,1055 -chrIV 845800 847970 HC_gene_1986_tx_10 1 - 845800 847970 . 2 954,1168 0,1003 -chrIV 845800 847970 HC_gene_1986_tx_11 1 - 845800 847970 . 2 501,1597 0,574 -chrIV 845800 847970 HC_gene_1986_tx_12 1 - 845800 847970 . 2 959,1114 0,1057 -chrIV 845800 847970 HC_gene_1986_tx_13 1 - 845800 847970 . 2 915,1138 0,1033 -chrIV 845800 847970 HC_gene_1986_tx_14 1 - 845800 847970 . 2 943,527 0,1644 -chrIV 845800 847970 HC_gene_1986_tx_15 1 - 845800 847970 . 2 971,1138 0,1033 -chrIV 845800 847970 HC_gene_1986_tx_16 1 - 845800 847970 . 2 943,1138 0,1033 -chrIV 848359 850286 HC_gene_1379_tx_1 15 + 848359 850286 . 1 1928 0 -chrIV 849051 850286 HC_gene_1379_tx_2 9 + 849051 850286 . 1 1236 0 -chrIV 849748 850286 HC_gene_1379_tx_3 20 + 849748 850286 . 1 539 0 -chrIV 849828 850286 HC_gene_1379_tx_4 2 + 849828 850286 . 1 459 0 -chrIV 850182 851000 HC_gene_1987_tx_1 96 - 850182 851000 . 1 819 0 -chrIV 850182 851000 HC_gene_1987_tx_2 1 - 850182 851000 . 2 223,506 0,313 -chrIV 851194 852438 HC_gene_1380_tx_1 10 + 851194 852438 . 1 1245 0 -chrIV 851194 852501 HC_gene_1380_tx_2 17 + 851194 852501 . 1 1308 0 -chrIV 851194 852617 HC_gene_1380_tx_3 5 + 851194 852617 . 1 1424 0 -chrIV 851806 852501 HC_gene_1380_tx_4 4 + 851806 852501 . 1 696 0 -chrIV 851806 852617 HC_gene_1380_tx_5 1 + 851806 852617 . 1 812 0 -chrIV 852495 853987 HC_gene_1988_tx_1 14 - 852495 853987 . 1 1493 0 -chrIV 852600 853987 HC_gene_1988_tx_2 3 - 852600 853987 . 1 1388 0 -chrIV 854127 855331 HC_gene_1989_tx_1 3 - 854127 855331 . 1 1205 0 -chrIV 854127 855891 HC_gene_1989_tx_2 2 - 854127 855891 . 1 1765 0 -chrIV 854127 855983 HC_gene_1989_tx_3 1 - 854127 855983 . 1 1857 0 -chrIV 854127 856159 HC_gene_1989_tx_4 13 - 854127 856159 . 1 2033 0 -chrIV 854127 856159 HC_gene_1989_tx_5 1 - 854127 856159 . 2 903,1067 0,966 -chrIV 854127 856159 HC_gene_1989_tx_6 1 - 854127 856159 . 2 811,828 0,1205 -chrIV 854127 856159 HC_gene_1989_tx_7 1 - 854127 856159 . 2 943,1009 0,1024 -chrIV 856312 856857 HC_gene_1381_tx_1 1 + 856312 856857 . 1 546 0 -chrIV 856312 856865 HC_gene_1381_tx_2 1 + 856312 856865 . 1 554 0 -chrIV 856312 856867 HC_gene_1381_tx_3 1 + 856312 856867 . 1 556 0 -chrIV 856312 856871 HC_gene_1381_tx_4 1 + 856312 856871 . 1 560 0 -chrIV 856312 856874 HC_gene_1381_tx_5 1 + 856312 856874 . 1 563 0 -chrIV 856312 856875 HC_gene_1381_tx_6 2 + 856312 856875 . 1 564 0 -chrIV 856312 856876 HC_gene_1381_tx_7 5 + 856312 856876 . 1 565 0 -chrIV 856312 856878 HC_gene_1381_tx_8 2 + 856312 856878 . 1 567 0 -chrIV 856312 856879 HC_gene_1381_tx_9 3 + 856312 856879 . 1 568 0 -chrIV 856312 856880 HC_gene_1381_tx_10 1 + 856312 856880 . 1 569 0 -chrIV 856312 856882 HC_gene_1381_tx_11 2 + 856312 856882 . 1 571 0 -chrIV 856312 856883 HC_gene_1381_tx_12 1 + 856312 856883 . 1 572 0 -chrIV 856312 856884 HC_gene_1381_tx_13 3 + 856312 856884 . 1 573 0 -chrIV 856312 856886 HC_gene_1381_tx_14 7 + 856312 856886 . 1 575 0 -chrIV 856312 856888 HC_gene_1381_tx_15 1 + 856312 856888 . 1 577 0 -chrIV 856312 856889 HC_gene_1381_tx_16 2 + 856312 856889 . 1 578 0 -chrIV 856312 856892 HC_gene_1381_tx_17 2 + 856312 856892 . 1 581 0 -chrIV 856312 856895 HC_gene_1381_tx_18 1 + 856312 856895 . 1 584 0 -chrIV 856312 856900 HC_gene_1381_tx_19 2 + 856312 856900 . 1 589 0 -chrIV 856312 856905 HC_gene_1381_tx_20 1 + 856312 856905 . 1 594 0 -chrIV 856312 856911 HC_gene_1381_tx_21 1 + 856312 856911 . 1 600 0 -chrIV 856312 856914 HC_gene_1381_tx_22 1 + 856312 856914 . 1 603 0 -chrIV 856312 856917 HC_gene_1381_tx_23 1 + 856312 856917 . 1 606 0 -chrIV 856312 856919 HC_gene_1381_tx_24 1 + 856312 856919 . 1 608 0 -chrIV 856312 856925 HC_gene_1381_tx_25 2 + 856312 856925 . 1 614 0 -chrIV 856312 856927 HC_gene_1381_tx_26 2 + 856312 856927 . 1 616 0 -chrIV 856312 856929 HC_gene_1381_tx_27 5 + 856312 856929 . 1 618 0 -chrIV 856312 856933 HC_gene_1381_tx_28 1 + 856312 856933 . 1 622 0 -chrIV 856312 856934 HC_gene_1381_tx_29 4 + 856312 856934 . 1 623 0 -chrIV 856312 856935 HC_gene_1381_tx_30 5 + 856312 856935 . 1 624 0 -chrIV 856312 856936 HC_gene_1381_tx_31 1 + 856312 856936 . 1 625 0 -chrIV 856312 856964 HC_gene_1381_tx_32 1 + 856312 856964 . 1 653 0 -chrIV 856312 856966 HC_gene_1381_tx_33 1 + 856312 856966 . 1 655 0 -chrIV 856312 856967 HC_gene_1381_tx_34 1 + 856312 856967 . 1 656 0 -chrIV 856312 856971 HC_gene_1381_tx_35 1 + 856312 856971 . 1 660 0 -chrIV 856312 856974 HC_gene_1381_tx_36 1 + 856312 856974 . 1 663 0 -chrIV 856312 856976 HC_gene_1381_tx_37 1 + 856312 856976 . 1 665 0 -chrIV 856312 856977 HC_gene_1381_tx_38 1 + 856312 856977 . 1 666 0 -chrIV 856312 856981 HC_gene_1381_tx_39 1 + 856312 856981 . 1 670 0 -chrIV 856312 856992 HC_gene_1381_tx_40 3 + 856312 856992 . 1 681 0 -chrIV 856312 856993 HC_gene_1381_tx_41 1 + 856312 856993 . 1 682 0 -chrIV 856312 856994 HC_gene_1381_tx_42 1 + 856312 856994 . 1 683 0 -chrIV 856312 856995 HC_gene_1381_tx_43 1 + 856312 856995 . 1 684 0 -chrIV 856312 856997 HC_gene_1381_tx_44 5 + 856312 856997 . 1 686 0 -chrIV 856312 856998 HC_gene_1381_tx_45 1 + 856312 856998 . 1 687 0 -chrIV 856312 856999 HC_gene_1381_tx_46 1 + 856312 856999 . 1 688 0 -chrIV 856312 857004 HC_gene_1381_tx_47 2 + 856312 857004 . 1 693 0 -chrIV 856312 857006 HC_gene_1381_tx_48 1 + 856312 857006 . 1 695 0 -chrIV 856312 857008 HC_gene_1381_tx_49 1 + 856312 857008 . 1 697 0 -chrIV 856312 857016 HC_gene_1381_tx_50 1 + 856312 857016 . 1 705 0 -chrIV 856312 857019 HC_gene_1381_tx_51 1 + 856312 857019 . 1 708 0 -chrIV 856312 857021 HC_gene_1381_tx_52 1 + 856312 857021 . 1 710 0 -chrIV 856312 857022 HC_gene_1381_tx_53 1 + 856312 857022 . 1 711 0 -chrIV 856312 857026 HC_gene_1381_tx_54 2 + 856312 857026 . 1 715 0 -chrIV 856312 857030 HC_gene_1381_tx_55 1 + 856312 857030 . 1 719 0 -chrIV 856312 857032 HC_gene_1381_tx_56 1 + 856312 857032 . 1 721 0 -chrIV 856312 857037 HC_gene_1381_tx_57 1 + 856312 857037 . 1 726 0 -chrIV 856312 857038 HC_gene_1381_tx_58 1 + 856312 857038 . 1 727 0 -chrIV 856312 857039 HC_gene_1381_tx_59 1 + 856312 857039 . 1 728 0 -chrIV 856312 857040 HC_gene_1381_tx_60 1 + 856312 857040 . 1 729 0 -chrIV 856312 857043 HC_gene_1381_tx_61 1 + 856312 857043 . 1 732 0 -chrIV 856312 857048 HC_gene_1381_tx_62 1 + 856312 857048 . 1 737 0 -chrIV 856312 857346 HC_gene_1381_tx_63 1 + 856312 857346 . 1 1035 0 -chrIV 856534 856882 HC_gene_1381_tx_64 3 + 856534 856882 . 1 349 0 -chrIV 856534 856886 HC_gene_1381_tx_65 3 + 856534 856886 . 1 353 0 -chrIV 856534 856892 HC_gene_1381_tx_66 1 + 856534 856892 . 1 359 0 -chrIV 856534 856923 HC_gene_1381_tx_67 1 + 856534 856923 . 1 390 0 -chrIV 856534 856935 HC_gene_1381_tx_68 1 + 856534 856935 . 1 402 0 -chrIV 856534 857004 HC_gene_1381_tx_69 2 + 856534 857004 . 1 471 0 -chrIV 856534 857036 HC_gene_1381_tx_70 1 + 856534 857036 . 1 503 0 -chrIV 856534 857040 HC_gene_1381_tx_71 1 + 856534 857040 . 1 507 0 -chrIV 856764 857985 HC_gene_1990_tx_1 8 - 856764 857985 . 1 1222 0 -chrIV 856863 857985 HC_gene_1990_tx_2 18 - 856863 857985 . 1 1123 0 -chrIV 858108 859277 HC_gene_1382_tx_1 52 + 858108 859277 . 1 1170 0 -chrIV 858500 859277 HC_gene_1382_tx_2 13 + 858500 859277 . 1 778 0 -chrIV 858810 859277 HC_gene_1382_tx_3 5 + 858810 859277 . 1 468 0 -chrIV 859325 860590 HC_gene_1383_tx_1 1 + 859325 860590 . 1 1266 0 -chrIV 859325 861618 HC_gene_1383_tx_2 13 + 859325 861618 . 1 2294 0 -chrIV 859325 861618 HC_gene_1383_tx_3 1 + 859325 861618 . 2 1243,982 0,1312 -chrIV 859325 861618 HC_gene_1383_tx_4 1 + 859325 861618 . 2 572,1330 0,964 -chrIV 861185 861521 MC_gene_1991_tx_1 1 - 861185 861521 . 1 337 0 -chrIV 861706 862627 HC_gene_1384_tx_1 4 + 861706 862627 . 1 922 0 -chrIV 861706 864839 HC_gene_1384_tx_2 1 + 861706 864839 . 1 3134 0 -chrIV 861706 864939 HC_gene_1384_tx_3 15 + 861706 864939 . 1 3234 0 -chrIV 861706 864939 HC_gene_1384_tx_4 1 + 861706 864939 . 2 1356,1145 0,2089 -chrIV 864817 865330 HC_gene_1992_tx_1 6 - 864817 865330 . 1 514 0 -chrIV 864817 866394 HC_gene_1992_tx_2 1 - 864817 866394 . 1 1578 0 -chrIV 864817 866610 HC_gene_1992_tx_3 1 - 864817 866610 . 1 1794 0 -chrIV 864817 867442 HC_gene_1992_tx_4 1 - 864817 867442 . 1 2626 0 -chrIV 864817 867612 HC_gene_1992_tx_5 1 - 864817 867612 . 1 2796 0 -chrIV 864817 867612 HC_gene_1992_tx_6 1 - 864817 867612 . 2 1696,750 0,2046 -chrIV 868099 870681 HC_gene_1385_tx_1 9 + 868099 870681 . 1 2583 0 -chrIV 868479 870681 HC_gene_1385_tx_2 3 + 868479 870681 . 1 2203 0 -chrIV 868826 870681 HC_gene_1385_tx_3 6 + 868826 870681 . 1 1856 0 -chrIV 869643 870681 HC_gene_1385_tx_4 4 + 869643 870681 . 1 1039 0 -chrIV 869982 870681 HC_gene_1385_tx_5 8 + 869982 870681 . 1 700 0 -chrIV 871041 871485 HC_gene_1386_tx_1 47 + 871041 871485 . 1 445 0 -chrIV 871041 871575 HC_gene_1386_tx_2 14 + 871041 871575 . 1 535 0 -chrIV 871041 871657 HC_gene_1386_tx_3 172 + 871041 871657 . 1 617 0 -chrIV 871228 871485 HC_gene_1386_tx_4 3 + 871228 871485 . 1 258 0 -chrIV 871228 871657 HC_gene_1386_tx_5 15 + 871228 871657 . 1 430 0 -chrIV 871604 872481 MC_gene_1993_tx_1 1 - 871604 872481 . 1 878 0 -chrIV 873273 875388 MC_gene_1387_tx_1 1 + 873273 875388 . 1 2116 0 -chrIV 874542 877784 MC_gene_1388_tx_1 1 + 874542 877784 . 1 3243 0 -chrIV 875746 877871 MC_gene_1389_tx_1 1 + 875746 877871 . 1 2126 0 -chrIV 878338 880272 MC_gene_1994_tx_1 1 - 878338 880272 . 1 1935 0 -chrIV 883471 884261 MC_gene_1390_tx_1 1 + 883471 884261 . 1 791 0 -chrIV 884687 887018 HC_gene_1391_tx_1 45 + 884687 887018 . 1 2332 0 -chrIV 884687 887018 HC_gene_1391_tx_2 1 + 884687 887018 . 2 1242,988 0,1344 -chrIV 884687 887018 HC_gene_1391_tx_3 1 + 884687 887018 . 2 366,1353 0,979 -chrIV 884687 887018 HC_gene_1391_tx_4 1 + 884687 887018 . 2 1185,968 0,1364 -chrIV 884687 887018 HC_gene_1391_tx_5 1 + 884687 887018 . 2 1187,1059 0,1273 -chrIV 884687 887018 HC_gene_1391_tx_6 1 + 884687 887018 . 2 416,1844 0,488 -chrIV 884687 887018 HC_gene_1391_tx_7 1 + 884687 887018 . 2 990,1218 0,1114 -chrIV 884874 887018 HC_gene_1391_tx_8 4 + 884874 887018 . 1 2145 0 -chrIV 885239 887018 HC_gene_1391_tx_9 5 + 885239 887018 . 1 1780 0 -chrIV 885305 887018 HC_gene_1391_tx_10 9 + 885305 887018 . 1 1714 0 -chrIV 885935 887018 HC_gene_1391_tx_11 14 + 885935 887018 . 1 1084 0 -chrIV 886138 887018 HC_gene_1391_tx_12 10 + 886138 887018 . 1 881 0 -chrIV 886433 886893 LC_gene_1995_tx_1 1 - 886433 886893 . 1 461 0 -chrIV 886919 887900 MC_gene_1996_tx_1 1 - 886919 887900 . 1 982 0 -chrIV 887166 888995 HC_gene_1392_tx_1 176 + 887166 888995 . 1 1830 0 -chrIV 887166 888995 HC_gene_1392_tx_2 1 + 887166 888995 . 2 401,626 0,1204 -chrIV 887166 888995 HC_gene_1392_tx_3 1 + 887166 888995 . 2 1177,429 0,1401 -chrIV 887166 888995 HC_gene_1392_tx_4 1 + 887166 888995 . 2 1154,634 0,1196 -chrIV 887166 888995 HC_gene_1392_tx_5 1 + 887166 888995 . 2 1123,639 0,1191 -chrIV 887168 888995 HC_gene_1392_tx_6 1 + 887168 888995 . 2 1325,392 0,1436 -chrIV 887694 888995 HC_gene_1392_tx_7 12 + 887694 888995 . 1 1302 0 -chrIV 887694 889099 HC_gene_1392_tx_8 1 + 887694 889099 . 1 1406 0 -chrIV 887770 888995 HC_gene_1392_tx_9 21 + 887770 888995 . 1 1226 0 -chrIV 887888 888995 HC_gene_1392_tx_10 9 + 887888 888995 . 1 1108 0 -chrIV 888007 888995 HC_gene_1392_tx_11 18 + 888007 888995 . 1 989 0 -chrIV 888181 888995 HC_gene_1392_tx_12 15 + 888181 888995 . 1 815 0 -chrIV 888477 888995 HC_gene_1392_tx_13 35 + 888477 888995 . 1 519 0 -chrIV 888477 888995 HC_gene_1392_tx_14 1 + 888477 888995 . 2 301,155 0,364 -chrIV 888477 889099 HC_gene_1392_tx_15 1 + 888477 889099 . 1 623 0 -chrIV 888713 888995 HC_gene_1392_tx_16 29 + 888713 888995 . 1 283 0 -chrIV 889502 892768 HC_gene_1393_tx_1 1 + 889502 892768 . 1 3267 0 -chrIV 892007 892442 MC_gene_1997_tx_1 1 - 892007 892442 . 1 436 0 -chrIV 892010 892212 MC_gene_1997_tx_2 1 - 892010 892212 . 1 203 0 -chrIV 892245 892846 HC_gene_1394_tx_1 1 + 892245 892846 . 1 602 0 -chrIV 892653 893367 MC_gene_1998_tx_1 1 - 892653 893367 . 1 715 0 -chrIV 892733 893516 MC_gene_1999_tx_1 1 - 892733 893516 . 1 784 0 -chrIV 892758 894026 HC_gene_1395_tx_1 108 + 892758 894026 . 1 1269 0 -chrIV 892758 894026 HC_gene_1395_tx_2 1 + 892758 894026 . 2 1105,98 0,1171 -chrIV 892758 894026 HC_gene_1395_tx_3 1 + 892758 894026 . 2 66,877 0,392 -chrIV 892758 894026 HC_gene_1395_tx_4 1 + 892758 894026 . 2 93,603 0,666 -chrIV 893056 894026 HC_gene_1395_tx_5 22 + 893056 894026 . 1 971 0 -chrIV 893307 894026 HC_gene_1395_tx_6 29 + 893307 894026 . 1 720 0 -chrIV 894526 899624 HC_gene_1396_tx_1 1 + 894526 899624 . 1 5099 0 -chrIV 899478 903538 HC_gene_2000_tx_1 1 - 899478 903538 . 1 4061 0 -chrIV 903658 904061 HC_gene_2001_tx_1 6 - 903658 904061 . 1 404 0 -chrIV 904291 904667 HC_gene_1397_tx_1 1 + 904291 904667 . 1 377 0 -chrIV 904291 905128 HC_gene_1397_tx_2 4 + 904291 905128 . 1 838 0 -chrIV 905252 907088 HC_gene_2002_tx_1 11 - 905252 907088 . 1 1837 0 -chrIV 905252 907088 HC_gene_2002_tx_2 1 - 905252 907088 . 2 48,1735 0,102 -chrIV 907334 909640 HC_gene_1398_tx_1 5 + 907334 909640 . 1 2307 0 -chrIV 907334 909971 HC_gene_1398_tx_2 7 + 907334 909971 . 1 2638 0 -chrIV 907334 910082 HC_gene_1398_tx_3 1 + 907334 910082 . 1 2749 0 -chrIV 907653 909640 HC_gene_1398_tx_4 1 + 907653 909640 . 1 1988 0 -chrIV 908195 908948 MC_gene_2003_tx_1 1 - 908195 908948 . 1 754 0 -chrIV 908337 909376 MC_gene_2004_tx_1 1 - 908337 909376 . 1 1040 0 -chrIV 908498 909488 MC_gene_2005_tx_1 1 - 908498 909488 . 1 991 0 -chrIV 909040 909640 HC_gene_1398_tx_5 3 + 909040 909640 . 1 601 0 -chrIV 909040 909971 HC_gene_1398_tx_6 2 + 909040 909971 . 1 932 0 -chrIV 909859 911466 HC_gene_1399_tx_1 1 + 909859 911466 . 1 1608 0 -chrIV 909972 911379 HC_gene_2006_tx_1 2 - 909972 911379 . 1 1408 0 -chrIV 910013 911466 HC_gene_1399_tx_2 9 + 910013 911466 . 1 1454 0 -chrIV 910013 911466 HC_gene_1399_tx_3 1 + 910013 911466 . 2 139,696 0,758 -chrIV 910013 911466 HC_gene_1399_tx_4 1 + 910013 911466 . 2 187,1038 0,416 -chrIV 910063 911379 HC_gene_2006_tx_2 2 - 910063 911379 . 1 1317 0 -chrIV 911397 911831 HC_gene_2007_tx_1 3 - 911397 911831 . 1 435 0 -chrIV 911744 913804 HC_gene_1400_tx_1 3 + 911744 913804 . 1 2061 0 -chrIV 912396 913750 HC_gene_2008_tx_1 4 - 912396 913750 . 1 1355 0 -chrIV 912396 913750 HC_gene_2008_tx_2 1 - 912396 913750 . 2 962,106 0,1249 -chrIV 913779 914121 MC_gene_2009_tx_1 1 - 913779 914121 . 1 343 0 -chrIV 913933 914282 MC_gene_1401_tx_1 1 + 913933 914282 . 1 350 0 -chrIV 914186 914526 HC_gene_2010_tx_1 237 - 914186 914526 . 1 341 0 -chrIV 914186 914747 HC_gene_2010_tx_2 2518 - 914186 914747 . 1 562 0 -chrIV 914786 915583 MC_gene_2011_tx_1 1 - 914786 915583 . 1 798 0 -chrIV 915457 916090 HC_gene_1402_tx_1 2538 + 915457 916090 . 1 634 0 -chrIV 915548 916090 HC_gene_1402_tx_2 416 + 915548 916090 . 1 543 0 -chrIV 915961 916150 HC_gene_2012_tx_1 15 - 915961 916150 . 1 190 0 -chrIV 915961 916309 HC_gene_2012_tx_2 1 - 915961 916309 . 1 349 0 -chrIV 916462 917283 HC_gene_1403_tx_1 996 + 916462 917283 . 1 822 0 -chrIV 916537 917283 HC_gene_1403_tx_2 249 + 916537 917283 . 1 747 0 -chrIV 916672 917283 HC_gene_1403_tx_3 108 + 916672 917283 . 1 612 0 -chrIV 916759 917283 HC_gene_1403_tx_4 176 + 916759 917283 . 1 525 0 -chrIV 916849 917283 HC_gene_1403_tx_5 131 + 916849 917283 . 1 435 0 -chrIV 916967 917283 HC_gene_1403_tx_6 111 + 916967 917283 . 1 317 0 -chrIV 917445 921774 HC_gene_1404_tx_1 1 + 917445 921774 . 1 4330 0 -chrIV 917445 921857 HC_gene_1404_tx_2 1 + 917445 921857 . 1 4413 0 -chrIV 917445 921977 HC_gene_1404_tx_3 1 + 917445 921977 . 1 4533 0 -chrIV 917445 921977 HC_gene_1404_tx_4 1 + 917445 921977 . 2 1622,1926 0,2607 -chrIV 921858 923897 HC_gene_2013_tx_1 11 - 921858 923897 . 1 2040 0 -chrIV 921858 923897 HC_gene_2013_tx_2 1 - 921858 923897 . 2 1017,379 0,1661 -chrIV 921858 923958 HC_gene_2013_tx_3 2 - 921858 923958 . 1 2101 0 -chrIV 922976 924219 LC_gene_1405_tx_1 1 + 922976 924219 . 1 1244 0 -chrIV 924159 924515 HC_gene_2014_tx_1 42 - 924159 924515 . 1 357 0 -chrIV 924683 926223 HC_gene_1406_tx_1 47 + 924683 926223 . 1 1541 0 -chrIV 924683 926223 HC_gene_1406_tx_2 1 + 924683 926223 . 3 214,683,440 0,316,1101 -chrIV 924683 926223 HC_gene_1406_tx_3 1 + 924683 926223 . 2 849,653 0,888 -chrIV 924683 926223 HC_gene_1406_tx_4 1 + 924683 926223 . 2 435,1041 0,500 -chrIV 926048 926553 HC_gene_2015_tx_1 4 - 926048 926553 . 1 506 0 -chrIV 926048 926936 HC_gene_2015_tx_3 19 - 926048 926936 . 1 889 0 -chrIV 926121 926553 HC_gene_2015_tx_2 4 - 926121 926553 . 1 433 0 -chrIV 926121 926936 HC_gene_2015_tx_4 24 - 926121 926936 . 1 816 0 -chrIV 926187 926936 HC_gene_2015_tx_5 1 - 926187 926936 . 1 750 0 -chrIV 926191 926936 HC_gene_2015_tx_6 5 - 926191 926936 . 1 746 0 -chrIV 927191 929275 HC_gene_1407_tx_1 84 + 927191 929275 . 1 2085 0 -chrIV 927191 929275 HC_gene_1407_tx_2 1 + 927191 929275 . 2 63,1655 0,430 -chrIV 927191 929275 HC_gene_1407_tx_3 1 + 927191 929275 . 2 703,1308 0,777 -chrIV 927425 929275 HC_gene_1407_tx_4 12 + 927425 929275 . 1 1851 0 -chrIV 927425 929275 HC_gene_1407_tx_5 1 + 927425 929275 . 2 1202,420 0,1431 -chrIV 927425 929275 HC_gene_1407_tx_6 1 + 927425 929275 . 2 768,974 0,877 -chrIV 927425 929275 HC_gene_1407_tx_7 1 + 927425 929275 . 2 1033,775 0,1076 -chrIV 929322 929748 HC_gene_2016_tx_1 56 - 929322 929748 . 1 427 0 -chrIV 929322 929825 HC_gene_2016_tx_2 97 - 929322 929825 . 1 504 0 -chrIV 929322 929825 HC_gene_2016_tx_3 1 - 929322 929825 . 2 41,414 0,90 -chrIV 929322 930119 HC_gene_2016_tx_4 146 - 929322 930119 . 1 798 0 -chrIV 929322 930119 HC_gene_2016_tx_5 1 - 929322 930119 . 2 289,250 0,548 -chrIV 929322 930354 HC_gene_2016_tx_6 1 - 929322 930354 . 2 427,531 0,502 -chrIV 929322 930399 HC_gene_2016_tx_7 804 - 929322 930399 . 1 1078 0 -chrIV 929322 930399 HC_gene_2016_tx_8 1 - 929322 930399 . 2 788,218 0,860 -chrIV 929322 930399 HC_gene_2016_tx_9 1 - 929322 930399 . 2 854,111 0,967 -chrIV 929322 930399 HC_gene_2016_tx_10 1 - 929322 930399 . 2 658,159 0,919 -chrIV 929322 930399 HC_gene_2016_tx_11 1 - 929322 930399 . 2 854,159 0,919 -chrIV 929322 930399 HC_gene_2016_tx_12 1 - 929322 930399 . 2 574,394 0,684 -chrIV 929322 930399 HC_gene_2016_tx_13 1 - 929322 930399 . 2 97,930 0,148 -chrIV 929322 930399 HC_gene_2016_tx_14 1 - 929322 930399 . 2 560,394 0,684 -chrIV 929322 930399 HC_gene_2016_tx_15 1 - 929322 930399 . 2 41,988 0,90 -chrIV 929322 930399 HC_gene_2016_tx_16 1 - 929322 930399 . 2 798,172 0,906 -chrIV 929322 930399 HC_gene_2016_tx_17 1 - 929322 930399 . 2 560,301 0,777 -chrIV 929322 930399 HC_gene_2016_tx_18 1 - 929322 930399 . 2 656,363 0,715 -chrIV 929322 930399 HC_gene_2016_tx_19 1 - 929322 930399 . 2 548,95 0,983 -chrIV 929322 930399 HC_gene_2016_tx_20 1 - 929322 930399 . 2 842,111 0,967 -chrIV 929322 930399 HC_gene_2016_tx_21 1 - 929322 930399 . 2 389,244 0,834 -chrIV 929322 930630 HC_gene_2016_tx_22 2 - 929322 930630 . 1 1309 0 -chrIV 930451 931038 HC_gene_1408_tx_1 9 + 930451 931038 . 1 588 0 -chrIV 930451 931144 HC_gene_1408_tx_2 3 + 930451 931144 . 1 694 0 -chrIV 930626 931038 HC_gene_1408_tx_3 3 + 930626 931038 . 1 413 0 -chrIV 930924 931144 HC_gene_1408_tx_4 1 + 930924 931144 . 1 221 0 -chrIV 930990 931144 HC_gene_1408_tx_5 1 + 930990 931144 . 1 155 0 -chrIV 930990 933321 HC_gene_1408_tx_6 1 + 930990 933321 . 2 1358,889 0,1443 -chrIV 930990 933321 HC_gene_1408_tx_7 40 + 930990 933321 . 1 2332 0 -chrIV 930990 933321 HC_gene_1408_tx_8 1 + 930990 933321 . 2 508,986 0,1346 -chrIV 930990 933321 HC_gene_1408_tx_9 1 + 930990 933321 . 2 1643,616 0,1716 -chrIV 930990 933380 HC_gene_1408_tx_10 3 + 930990 933380 . 1 2391 0 -chrIV 931377 933321 HC_gene_1408_tx_11 9 + 931377 933321 . 1 1945 0 -chrIV 931517 933321 HC_gene_1408_tx_12 7 + 931517 933321 . 1 1805 0 -chrIV 933225 933534 HC_gene_2017_tx_1 1 - 933225 933534 . 1 310 0 -chrIV 933503 935222 HC_gene_1409_tx_1 19 + 933503 935222 . 1 1720 0 -chrIV 933503 935297 HC_gene_1409_tx_2 1 + 933503 935297 . 1 1795 0 -chrIV 933503 935564 HC_gene_1409_tx_3 1 + 933503 935564 . 1 2062 0 -chrIV 933562 934896 MC_gene_2018_tx_1 1 - 933562 934896 . 1 1335 0 -chrIV 933789 935222 HC_gene_1409_tx_4 2 + 933789 935222 . 1 1434 0 -chrIV 935121 935622 HC_gene_2019_tx_1 6 - 935121 935622 . 1 502 0 -chrIV 935121 935918 HC_gene_2019_tx_2 54 - 935121 935918 . 1 798 0 -chrIV 935121 935918 HC_gene_2019_tx_3 1 - 935121 935918 . 2 504,189 0,609 -chrIV 935121 936324 HC_gene_2019_tx_4 10 - 935121 936324 . 1 1204 0 -chrIV 935378 936324 HC_gene_2019_tx_5 1 - 935378 936324 . 1 947 0 -chrIV 935383 935918 HC_gene_2019_tx_6 1 - 935383 935918 . 1 536 0 -chrIV 936149 936430 LC_gene_1410_tx_1 1 + 936149 936430 . 1 282 0 -chrIV 936472 937621 HC_gene_1411_tx_1 51 + 936472 937621 . 1 1150 0 -chrIV 936472 937783 HC_gene_1411_tx_2 5 + 936472 937783 . 1 1312 0 -chrIV 937545 937977 HC_gene_2020_tx_1 3 - 937545 937977 . 1 433 0 -chrIV 937545 938374 HC_gene_2020_tx_2 1 - 937545 938374 . 1 830 0 -chrIV 937545 939000 HC_gene_2020_tx_4 2 - 937545 939000 . 1 1456 0 -chrIV 937545 940846 HC_gene_2020_tx_14 2 - 937545 940846 . 1 3302 0 -chrIV 937698 937977 HC_gene_2020_tx_19 9 - 937698 937977 . 1 280 0 -chrIV 937698 938374 HC_gene_2020_tx_3 18 - 937698 938374 . 1 677 0 -chrIV 937698 939000 HC_gene_2020_tx_5 5 - 937698 939000 . 1 1303 0 -chrIV 937698 939000 HC_gene_2020_tx_6 1 - 937698 939000 . 2 518,732 0,571 -chrIV 937698 939247 HC_gene_2020_tx_7 5 - 937698 939247 . 1 1550 0 -chrIV 937698 939247 HC_gene_2020_tx_8 1 - 937698 939247 . 2 659,817 0,733 -chrIV 937698 939411 HC_gene_2020_tx_9 19 - 937698 939411 . 1 1714 0 -chrIV 937698 939411 HC_gene_2020_tx_10 1 - 937698 939411 . 2 1023,562 0,1152 -chrIV 937698 939620 HC_gene_2020_tx_11 6 - 937698 939620 . 1 1923 0 -chrIV 937698 939620 HC_gene_2020_tx_12 1 - 937698 939620 . 2 844,1036 0,887 -chrIV 937698 939865 HC_gene_2020_tx_13 3 - 937698 939865 . 1 2168 0 -chrIV 937698 940846 HC_gene_2020_tx_15 28 - 937698 940846 . 1 3149 0 -chrIV 937698 940846 HC_gene_2020_tx_16 1 - 937698 940846 . 2 611,2423 0,726 -chrIV 937698 940846 HC_gene_2020_tx_17 1 - 937698 940846 . 2 799,2269 0,880 -chrIV 937698 940846 HC_gene_2020_tx_18 1 - 937698 940846 . 2 2660,136 0,3013 -chrIV 940979 943446 HC_gene_2021_tx_1 6 - 940979 943446 . 1 2468 0 -chrIV 942443 943446 HC_gene_2021_tx_2 1 - 942443 943446 . 1 1004 0 -chrIV 943555 945173 HC_gene_2022_tx_1 2 - 943555 945173 . 1 1619 0 -chrIV 943668 945173 HC_gene_2022_tx_2 11 - 943668 945173 . 1 1506 0 -chrIV 945330 945854 HC_gene_1412_tx_1 55 + 945330 945854 . 1 525 0 -chrIV 945587 945854 HC_gene_1412_tx_2 7 + 945587 945854 . 1 268 0 -chrIV 946717 948557 HC_gene_1413_tx_1 2 + 946717 948557 . 2 965,806 0,1035 -chrIV 946717 948557 HC_gene_1413_tx_2 9 + 946717 948557 . 1 1841 0 -chrIV 946717 948557 HC_gene_1413_tx_3 1 + 946717 948557 . 2 1112,688 0,1153 -chrIV 946871 948523 MC_gene_2023_tx_1 1 - 946871 948523 . 1 1653 0 -chrIV 948465 949921 HC_gene_2024_tx_1 1 - 948465 949921 . 1 1457 0 -chrIV 948465 950165 HC_gene_2024_tx_2 1 - 948465 950165 . 1 1701 0 -chrIV 948465 950313 HC_gene_2024_tx_3 6 - 948465 950313 . 1 1849 0 -chrIV 950537 952401 HC_gene_1414_tx_1 1 + 950537 952401 . 1 1865 0 -chrIV 950537 952599 HC_gene_1414_tx_2 13 + 950537 952599 . 1 2063 0 -chrIV 950537 952599 HC_gene_1414_tx_3 1 + 950537 952599 . 2 1129,875 0,1188 -chrIV 951024 952401 HC_gene_1414_tx_4 1 + 951024 952401 . 1 1378 0 -chrIV 951024 952599 HC_gene_1414_tx_5 1 + 951024 952599 . 1 1576 0 -chrIV 951146 952599 HC_gene_1414_tx_6 1 + 951146 952599 . 1 1454 0 -chrIV 952736 954137 HC_gene_1415_tx_1 115 + 952736 954137 . 1 1402 0 -chrIV 952736 954137 HC_gene_1415_tx_2 1 + 952736 954137 . 3 95,1033,87 0,152,1315 -chrIV 952736 954137 HC_gene_1415_tx_3 1 + 952736 954137 . 2 781,566 0,836 -chrIV 952736 954137 HC_gene_1415_tx_4 1 + 952736 954137 . 2 781,557 0,845 -chrIV 952918 954137 HC_gene_1415_tx_5 3 + 952918 954137 . 1 1220 0 -chrIV 953209 954137 HC_gene_1415_tx_6 14 + 953209 954137 . 1 929 0 -chrIV 953209 954137 HC_gene_1415_tx_7 1 + 953209 954137 . 2 404,428 0,501 -chrIV 954036 954512 MC_gene_2025_tx_1 1 - 954036 954512 . 1 477 0 -chrIV 954036 954849 MC_gene_2025_tx_2 1 - 954036 954849 . 1 814 0 -chrIV 954275 955034 HC_gene_1416_tx_1 6 + 954275 955034 . 1 760 0 -chrIV 954275 955102 HC_gene_1416_tx_2 16 + 954275 955102 . 1 828 0 -chrIV 954789 955527 MC_gene_2026_tx_1 1 - 954789 955527 . 1 739 0 -chrIV 954960 955281 MC_gene_2026_tx_2 1 - 954960 955281 . 1 322 0 -chrIV 955663 957765 HC_gene_1417_tx_1 1 + 955663 957765 . 1 2103 0 -chrIV 955671 957765 HC_gene_1417_tx_2 21 + 955671 957765 . 1 2095 0 -chrIV 955771 957765 HC_gene_1417_tx_3 1 + 955771 957765 . 1 1995 0 -chrIV 956605 957499 LC_gene_2027_tx_1 1 - 956605 957499 . 1 895 0 -chrIV 956837 957765 HC_gene_1417_tx_4 2 + 956837 957765 . 1 929 0 -chrIV 957208 957765 HC_gene_1417_tx_5 3 + 957208 957765 . 1 558 0 -chrIV 957300 957765 HC_gene_1417_tx_6 1 + 957300 957765 . 1 466 0 -chrIV 957687 958200 HC_gene_2028_tx_1 14 - 957687 958200 . 1 514 0 -chrIV 957687 958398 HC_gene_2028_tx_2 79 - 957687 958398 . 1 712 0 -chrIV 957826 958689 MC_gene_1418_tx_1 1 + 957826 958689 . 1 864 0 -chrIV 958415 959802 HC_gene_2029_tx_1 2 - 958415 959802 . 1 1388 0 -chrIV 958564 959802 HC_gene_2029_tx_2 12 - 958564 959802 . 1 1239 0 -chrIV 958564 959972 HC_gene_2029_tx_3 1 - 958564 959972 . 1 1409 0 -chrIV 958564 960032 HC_gene_2029_tx_4 1 - 958564 960032 . 1 1469 0 -chrIV 958564 960115 HC_gene_2029_tx_5 2 - 958564 960115 . 1 1552 0 -chrIV 958646 959802 HC_gene_2029_tx_6 2 - 958646 959802 . 1 1157 0 -chrIV 960000 962185 LC_gene_2030_tx_1 1 - 960000 962185 . 1 2186 0 -chrIV 960325 963284 HC_gene_1419_tx_1 26 + 960325 963284 . 1 2960 0 -chrIV 960326 963284 HC_gene_1419_tx_2 1 + 960326 963284 . 2 1572,1244 0,1715 -chrIV 961206 963284 HC_gene_1419_tx_3 5 + 961206 963284 . 1 2079 0 -chrIV 961206 963284 HC_gene_1419_tx_4 1 + 961206 963284 . 2 315,1220 0,859 -chrIV 961583 963284 HC_gene_1419_tx_5 7 + 961583 963284 . 1 1702 0 -chrIV 961887 963284 HC_gene_1419_tx_6 8 + 961887 963284 . 1 1398 0 -chrIV 963336 963854 MC_gene_2031_tx_1 1 - 963336 963854 . 1 519 0 -chrIV 963403 964116 HC_gene_1420_tx_1 2 + 963403 964116 . 1 714 0 -chrIV 963403 964564 HC_gene_1420_tx_2 10 + 963403 964564 . 1 1162 0 -chrIV 963403 964756 HC_gene_1420_tx_3 5 + 963403 964756 . 1 1354 0 -chrIV 963900 964725 HC_gene_2032_tx_1 11 - 963900 964725 . 1 826 0 -chrIV 964637 964725 HC_gene_2032_tx_2 1 - 964637 964725 . 1 89 0 -chrIV 965025 967054 HC_gene_1421_tx_1 11 + 965025 967054 . 1 2030 0 -chrIV 965025 967054 HC_gene_1421_tx_2 1 + 965025 967054 . 2 1187,746 0,1284 -chrIV 965405 967868 HC_gene_2033_tx_1 1 - 965405 967868 . 2 1065,1329 0,1135 -chrIV 965596 967868 HC_gene_2033_tx_2 2 - 965596 967868 . 1 2273 0 -chrIV 966290 967868 HC_gene_2033_tx_3 7 - 966290 967868 . 1 1579 0 -chrIV 966290 967868 HC_gene_2033_tx_4 1 - 966290 967868 . 2 84,512 0,1067 -chrIV 967992 969726 HC_gene_2034_tx_1 1 - 967992 969726 . 1 1735 0 -chrIV 967992 971479 HC_gene_2034_tx_2 1 - 967992 971479 . 1 3488 0 -chrIV 968062 969774 HC_gene_1422_tx_1 6 + 968062 969774 . 1 1713 0 -chrIV 969682 971471 HC_gene_2034_tx_3 1 - 969682 971471 . 1 1790 0 -chrIV 969682 971479 HC_gene_2034_tx_4 24 - 969682 971479 . 1 1798 0 -chrIV 969682 971479 HC_gene_2034_tx_5 1 - 969682 971479 . 2 775,875 0,923 -chrIV 969682 971481 HC_gene_2034_tx_6 1 - 969682 971481 . 1 1800 0 -chrIV 969682 971483 HC_gene_2034_tx_7 1 - 969682 971483 . 1 1802 0 -chrIV 970428 971479 HC_gene_2034_tx_8 5 - 970428 971479 . 1 1052 0 -chrIV 971695 972107 HC_gene_2035_tx_1 8 - 971695 972107 . 1 413 0 -chrIV 971695 972241 HC_gene_2035_tx_2 7 - 971695 972241 . 1 547 0 -chrIV 971695 972241 HC_gene_2035_tx_3 1 - 971695 972241 . 2 370,113 0,434 -chrIV 971695 972347 HC_gene_2035_tx_4 8 - 971695 972347 . 1 653 0 -chrIV 971695 972963 HC_gene_2035_tx_5 4 - 971695 972963 . 1 1269 0 -chrIV 971695 973099 HC_gene_2035_tx_6 4 - 971695 973099 . 1 1405 0 -chrIV 971695 973211 HC_gene_2035_tx_7 4 - 971695 973211 . 1 1517 0 -chrIV 971695 973211 HC_gene_2035_tx_8 1 - 971695 973211 . 2 969,345 0,1172 -chrIV 971695 973352 HC_gene_2035_tx_9 6 - 971695 973352 . 1 1658 0 -chrIV 971695 973352 HC_gene_2035_tx_10 1 - 971695 973352 . 2 71,1534 0,124 -chrIV 971695 974269 HC_gene_2035_tx_11 24 - 971695 974269 . 1 2575 0 -chrIV 971695 974269 HC_gene_2035_tx_12 1 - 971695 974269 . 2 91,2435 0,140 -chrIV 974295 975995 HC_gene_2036_tx_1 12 - 974295 975995 . 1 1701 0 -chrIV 974516 975995 HC_gene_2036_tx_2 12 - 974516 975995 . 1 1480 0 -chrIV 976377 977064 HC_gene_2037_tx_1 3 - 976377 977064 . 1 688 0 -chrIV 976377 977267 HC_gene_2037_tx_2 65 - 976377 977267 . 1 891 0 -chrIV 976515 977518 MC_gene_1423_tx_1 1 + 976515 977518 . 1 1004 0 -chrIV 977394 977743 HC_gene_2038_tx_1 14 - 977394 977743 . 1 350 0 -chrIV 977394 979026 HC_gene_2038_tx_2 6 - 977394 979026 . 1 1633 0 -chrIV 977394 979145 HC_gene_2038_tx_3 4 - 977394 979145 . 1 1752 0 -chrIV 977394 979241 HC_gene_2038_tx_4 53 - 977394 979241 . 1 1848 0 -chrIV 977520 978753 LC_gene_1424_tx_1 1 + 977520 978753 . 1 1234 0 -chrIV 978839 979344 MC_gene_1425_tx_1 1 + 978839 979344 . 1 506 0 -chrIV 979512 980051 HC_gene_1426_tx_1 1 + 979512 980051 . 1 540 0 -chrIV 979512 980188 HC_gene_1426_tx_2 15 + 979512 980188 . 1 677 0 -chrIV 980108 980559 HC_gene_2039_tx_1 2 - 980108 980559 . 1 452 0 -chrIV 980108 980622 HC_gene_2039_tx_2 3 - 980108 980622 . 1 515 0 -chrIV 980108 980831 HC_gene_2039_tx_5 4 - 980108 980831 . 1 724 0 -chrIV 980180 980559 HC_gene_2039_tx_3 3 - 980180 980559 . 1 380 0 -chrIV 980180 980622 HC_gene_2039_tx_4 3 - 980180 980622 . 1 443 0 -chrIV 980180 980831 HC_gene_2039_tx_6 13 - 980180 980831 . 1 652 0 -chrIV 980508 980831 HC_gene_2039_tx_7 3 - 980508 980831 . 1 324 0 -chrIV 980523 980831 HC_gene_2039_tx_8 1 - 980523 980831 . 1 309 0 -chrIV 981313 982729 LC_gene_2040_tx_1 1 - 981313 982729 . 1 1417 0 -chrIV 982034 983258 MC_gene_1427_tx_1 1 + 982034 983258 . 1 1225 0 -chrIV 987180 990240 MC_gene_2041_tx_1 1 - 987180 990240 . 1 3061 0 -chrIV 992841 993024 HC_gene_1428_tx_1 1 + 992841 993024 . 1 184 0 -chrIV 992841 993144 HC_gene_1428_tx_2 1 + 992841 993144 . 1 304 0 -chrIV 993186 994150 HC_gene_1429_tx_1 95 + 993186 994150 . 1 965 0 -chrIV 993186 994439 HC_gene_1429_tx_2 1 + 993186 994439 . 1 1254 0 -chrIV 994082 998392 HC_gene_2042_tx_1 1 - 994082 998392 . 1 4311 0 -chrIV 994166 998392 HC_gene_2042_tx_2 1 - 994166 998392 . 1 4227 0 -chrIV 995566 996630 HC_gene_2042_tx_3 1 - 995566 996630 . 1 1065 0 -chrIV 995566 998392 HC_gene_2042_tx_5 3 - 995566 998392 . 1 2827 0 -chrIV 995766 996630 HC_gene_2042_tx_4 9 - 995766 996630 . 1 865 0 -chrIV 995766 998392 HC_gene_2042_tx_6 27 - 995766 998392 . 1 2627 0 -chrIV 995766 998392 HC_gene_2042_tx_7 1 - 995766 998392 . 2 1453,723 0,1904 -chrIV 995766 998392 HC_gene_2042_tx_8 1 - 995766 998392 . 2 1427,1006 0,1621 -chrIV 995958 998392 HC_gene_2042_tx_9 2 - 995958 998392 . 1 2435 0 -chrIV 998696 1000066 HC_gene_1430_tx_1 20 + 998696 1000066 . 1 1371 0 -chrIV 998696 1000066 HC_gene_1430_tx_2 1 + 998696 1000066 . 2 70,1094 0,277 -chrIV 998831 1000066 HC_gene_1430_tx_3 8 + 998831 1000066 . 1 1236 0 -chrIV 998831 1000066 HC_gene_1430_tx_4 1 + 998831 1000066 . 2 861,296 0,940 -chrIV 999963 1002161 HC_gene_2043_tx_1 1 - 999963 1002161 . 1 2199 0 -chrIV 999963 1002240 HC_gene_2043_tx_2 18 - 999963 1002240 . 1 2278 0 -chrIV 999963 1002240 HC_gene_2043_tx_3 1 - 999963 1002240 . 2 305,1927 0,351 -chrIV 1000303 1002240 HC_gene_2043_tx_4 1 - 1000303 1002240 . 1 1938 0 -chrIV 1002182 1003572 HC_gene_2044_tx_1 1 - 1002182 1003572 . 1 1391 0 -chrIV 1002278 1003572 HC_gene_2044_tx_2 14 - 1002278 1003572 . 1 1295 0 -chrIV 1002278 1003749 HC_gene_2044_tx_3 5 - 1002278 1003749 . 1 1472 0 -chrIV 1002355 1003572 HC_gene_2044_tx_4 37 - 1002355 1003572 . 1 1218 0 -chrIV 1002355 1003572 HC_gene_2044_tx_5 1 - 1002355 1003572 . 2 524,283 0,935 -chrIV 1002355 1003749 HC_gene_2044_tx_6 11 - 1002355 1003749 . 1 1395 0 -chrIV 1003965 1005254 HC_gene_1431_tx_1 24 + 1003965 1005254 . 1 1290 0 -chrIV 1003965 1005254 HC_gene_1431_tx_2 1 + 1003965 1005254 . 2 552,675 0,615 -chrIV 1004506 1005205 HC_gene_2045_tx_1 4 - 1004506 1005205 . 1 700 0 -chrIV 1005595 1008769 HC_gene_1432_tx_1 6 + 1005595 1008769 . 1 3175 0 -chrIV 1005595 1008769 HC_gene_1432_tx_2 1 + 1005595 1008769 . 2 1594,1416 0,1759 -chrIV 1006450 1008540 LC_gene_2046_tx_1 1 - 1006450 1008540 . 1 2091 0 -chrIV 1008972 1009942 HC_gene_1433_tx_1 116 + 1008972 1009942 . 1 971 0 -chrIV 1009277 1009942 HC_gene_1433_tx_2 24 + 1009277 1009942 . 1 666 0 -chrIV 1009439 1009942 HC_gene_1433_tx_3 23 + 1009439 1009942 . 1 504 0 -chrIV 1009689 1009942 HC_gene_1433_tx_4 10 + 1009689 1009942 . 1 254 0 -chrIV 1010132 1011309 HC_gene_1434_tx_1 1 + 1010132 1011309 . 1 1178 0 -chrIV 1010786 1011503 MC_gene_2047_tx_1 1 - 1010786 1011503 . 1 718 0 -chrIV 1011572 1012195 HC_gene_1435_tx_1 4 + 1011572 1012195 . 1 624 0 -chrIV 1011572 1013199 HC_gene_1435_tx_3 1 + 1011572 1013199 . 2 283,1235 0,393 -chrIV 1011572 1013199 HC_gene_1435_tx_4 16 + 1011572 1013199 . 1 1628 0 -chrIV 1011594 1012195 HC_gene_1435_tx_2 1 + 1011594 1012195 . 1 602 0 -chrIV 1012005 1013199 HC_gene_1435_tx_5 1 + 1012005 1013199 . 1 1195 0 -chrIV 1012154 1013199 HC_gene_1435_tx_6 4 + 1012154 1013199 . 1 1046 0 -chrIV 1012281 1013199 HC_gene_1435_tx_7 21 + 1012281 1013199 . 1 919 0 -chrIV 1012281 1013199 HC_gene_1435_tx_8 1 + 1012281 1013199 . 2 171,610 0,309 -chrIV 1012833 1013199 HC_gene_1435_tx_9 10 + 1012833 1013199 . 1 367 0 -chrIV 1012973 1013199 HC_gene_1435_tx_10 6 + 1012973 1013199 . 1 227 0 -chrIV 1012985 1013400 HC_gene_2048_tx_1 3 - 1012985 1013400 . 1 416 0 -chrIV 1012985 1013565 HC_gene_2048_tx_2 3 - 1012985 1013565 . 1 581 0 -chrIV 1012985 1013685 HC_gene_2048_tx_3 24 - 1012985 1013685 . 1 701 0 -chrIV 1013103 1013685 HC_gene_2048_tx_4 2 - 1013103 1013685 . 1 583 0 -chrIV 1013104 1013400 HC_gene_2048_tx_74 1 - 1013104 1013400 . 1 297 0 -chrIV 1013106 1013565 HC_gene_2048_tx_77 1 - 1013106 1013565 . 1 460 0 -chrIV 1013106 1013685 HC_gene_2048_tx_5 1 - 1013106 1013685 . 1 580 0 -chrIV 1013108 1013685 HC_gene_2048_tx_6 5 - 1013108 1013685 . 1 578 0 -chrIV 1013109 1013565 HC_gene_2048_tx_78 1 - 1013109 1013565 . 1 457 0 -chrIV 1013109 1013685 HC_gene_2048_tx_7 1 - 1013109 1013685 . 1 577 0 -chrIV 1013111 1013685 HC_gene_2048_tx_8 1 - 1013111 1013685 . 1 575 0 -chrIV 1013112 1013685 HC_gene_2048_tx_9 3 - 1013112 1013685 . 1 574 0 -chrIV 1013114 1013400 HC_gene_2048_tx_75 1 - 1013114 1013400 . 1 287 0 -chrIV 1013118 1013565 HC_gene_2048_tx_79 1 - 1013118 1013565 . 1 448 0 -chrIV 1013118 1013685 HC_gene_2048_tx_10 3 - 1013118 1013685 . 1 568 0 -chrIV 1013120 1013685 HC_gene_2048_tx_11 1 - 1013120 1013685 . 1 566 0 -chrIV 1013122 1013565 HC_gene_2048_tx_80 1 - 1013122 1013565 . 1 444 0 -chrIV 1013122 1013685 HC_gene_2048_tx_12 2 - 1013122 1013685 . 1 564 0 -chrIV 1013123 1013685 HC_gene_2048_tx_13 1 - 1013123 1013685 . 1 563 0 -chrIV 1013125 1013565 HC_gene_2048_tx_81 1 - 1013125 1013565 . 1 441 0 -chrIV 1013131 1013400 HC_gene_2048_tx_76 1 - 1013131 1013400 . 1 270 0 -chrIV 1013132 1013685 HC_gene_2048_tx_14 3 - 1013132 1013685 . 1 554 0 -chrIV 1013135 1013685 HC_gene_2048_tx_15 1 - 1013135 1013685 . 1 551 0 -chrIV 1013136 1013685 HC_gene_2048_tx_16 1 - 1013136 1013685 . 1 550 0 -chrIV 1013137 1013685 HC_gene_2048_tx_17 1 - 1013137 1013685 . 1 549 0 -chrIV 1013138 1013685 HC_gene_2048_tx_18 1 - 1013138 1013685 . 1 548 0 -chrIV 1013139 1013685 HC_gene_2048_tx_19 1 - 1013139 1013685 . 1 547 0 -chrIV 1013141 1013685 HC_gene_2048_tx_20 2 - 1013141 1013685 . 1 545 0 -chrIV 1013143 1013685 HC_gene_2048_tx_21 1 - 1013143 1013685 . 1 543 0 -chrIV 1013145 1013685 HC_gene_2048_tx_22 3 - 1013145 1013685 . 1 541 0 -chrIV 1013146 1013685 HC_gene_2048_tx_23 1 - 1013146 1013685 . 1 540 0 -chrIV 1013147 1013685 HC_gene_2048_tx_24 1 - 1013147 1013685 . 1 539 0 -chrIV 1013148 1013685 HC_gene_2048_tx_25 1 - 1013148 1013685 . 1 538 0 -chrIV 1013149 1013685 HC_gene_2048_tx_26 1 - 1013149 1013685 . 1 537 0 -chrIV 1013154 1013685 HC_gene_2048_tx_27 2 - 1013154 1013685 . 1 532 0 -chrIV 1013155 1013685 HC_gene_2048_tx_28 1 - 1013155 1013685 . 1 531 0 -chrIV 1013156 1013685 HC_gene_2048_tx_29 2 - 1013156 1013685 . 1 530 0 -chrIV 1013171 1013685 HC_gene_2048_tx_30 1 - 1013171 1013685 . 1 515 0 -chrIV 1013172 1013685 HC_gene_2048_tx_31 1 - 1013172 1013685 . 1 514 0 -chrIV 1013177 1013565 HC_gene_2048_tx_82 1 - 1013177 1013565 . 1 389 0 -chrIV 1013185 1013685 HC_gene_2048_tx_32 1 - 1013185 1013685 . 1 501 0 -chrIV 1013186 1013565 HC_gene_2048_tx_83 2 - 1013186 1013565 . 1 380 0 -chrIV 1013186 1013685 HC_gene_2048_tx_33 11 - 1013186 1013685 . 1 500 0 -chrIV 1013190 1013685 HC_gene_2048_tx_34 1 - 1013190 1013685 . 1 496 0 -chrIV 1013191 1013685 HC_gene_2048_tx_35 1 - 1013191 1013685 . 1 495 0 -chrIV 1013194 1013685 HC_gene_2048_tx_36 1 - 1013194 1013685 . 1 492 0 -chrIV 1013198 1013565 HC_gene_2048_tx_84 1 - 1013198 1013565 . 1 368 0 -chrIV 1013201 1013685 HC_gene_2048_tx_37 18 - 1013201 1013685 . 1 485 0 -chrIV 1013203 1013685 HC_gene_2048_tx_38 1 - 1013203 1013685 . 1 483 0 -chrIV 1013204 1013685 HC_gene_2048_tx_39 3 - 1013204 1013685 . 1 482 0 -chrIV 1013206 1013685 HC_gene_2048_tx_40 2 - 1013206 1013685 . 1 480 0 -chrIV 1013208 1013685 HC_gene_2048_tx_41 3 - 1013208 1013685 . 1 478 0 -chrIV 1013209 1013685 HC_gene_2048_tx_42 1 - 1013209 1013685 . 1 477 0 -chrIV 1013211 1013685 HC_gene_2048_tx_43 1 - 1013211 1013685 . 1 475 0 -chrIV 1013212 1013685 HC_gene_2048_tx_44 1 - 1013212 1013685 . 1 474 0 -chrIV 1013216 1013565 HC_gene_2048_tx_85 1 - 1013216 1013565 . 1 350 0 -chrIV 1013216 1013685 HC_gene_2048_tx_45 1 - 1013216 1013685 . 1 470 0 -chrIV 1013217 1013565 HC_gene_2048_tx_86 1 - 1013217 1013565 . 1 349 0 -chrIV 1013217 1013685 HC_gene_2048_tx_46 3 - 1013217 1013685 . 1 469 0 -chrIV 1013219 1013685 HC_gene_2048_tx_47 1 - 1013219 1013685 . 1 467 0 -chrIV 1013220 1013685 HC_gene_2048_tx_48 1 - 1013220 1013685 . 1 466 0 -chrIV 1013221 1013685 HC_gene_2048_tx_49 1 - 1013221 1013685 . 1 465 0 -chrIV 1013235 1013685 HC_gene_2048_tx_50 1 - 1013235 1013685 . 1 451 0 -chrIV 1013236 1013685 HC_gene_2048_tx_51 3 - 1013236 1013685 . 1 450 0 -chrIV 1013240 1013685 HC_gene_2048_tx_52 1 - 1013240 1013685 . 1 446 0 -chrIV 1013246 1013685 HC_gene_2048_tx_53 2 - 1013246 1013685 . 1 440 0 -chrIV 1013247 1013685 HC_gene_2048_tx_54 1 - 1013247 1013685 . 1 439 0 -chrIV 1013250 1013565 HC_gene_2048_tx_87 4 - 1013250 1013565 . 1 316 0 -chrIV 1013250 1013685 HC_gene_2048_tx_55 49 - 1013250 1013685 . 1 436 0 -chrIV 1013251 1013565 HC_gene_2048_tx_88 1 - 1013251 1013565 . 1 315 0 -chrIV 1013252 1013685 HC_gene_2048_tx_56 3 - 1013252 1013685 . 1 434 0 -chrIV 1013253 1013565 HC_gene_2048_tx_89 3 - 1013253 1013565 . 1 313 0 -chrIV 1013253 1013685 HC_gene_2048_tx_57 63 - 1013253 1013685 . 1 433 0 -chrIV 1013254 1013685 HC_gene_2048_tx_58 3 - 1013254 1013685 . 1 432 0 -chrIV 1013255 1013565 HC_gene_2048_tx_90 2 - 1013255 1013565 . 1 311 0 -chrIV 1013255 1013685 HC_gene_2048_tx_59 49 - 1013255 1013685 . 1 431 0 -chrIV 1013256 1013565 HC_gene_2048_tx_91 1 - 1013256 1013565 . 1 310 0 -chrIV 1013256 1013685 HC_gene_2048_tx_60 8 - 1013256 1013685 . 1 430 0 -chrIV 1013257 1013685 HC_gene_2048_tx_61 1 - 1013257 1013685 . 1 429 0 -chrIV 1013258 1013685 HC_gene_2048_tx_62 4 - 1013258 1013685 . 1 428 0 -chrIV 1013259 1013685 HC_gene_2048_tx_63 16 - 1013259 1013685 . 1 427 0 -chrIV 1013260 1013685 HC_gene_2048_tx_64 14 - 1013260 1013685 . 1 426 0 -chrIV 1013260 1013685 HC_gene_2048_tx_65 1 - 1013260 1013685 . 2 290,56 0,370 -chrIV 1013261 1013685 HC_gene_2048_tx_66 4 - 1013261 1013685 . 1 425 0 -chrIV 1013262 1013685 HC_gene_2048_tx_67 22 - 1013262 1013685 . 1 424 0 -chrIV 1013263 1013565 HC_gene_2048_tx_92 1 - 1013263 1013565 . 1 303 0 -chrIV 1013263 1013685 HC_gene_2048_tx_68 42 - 1013263 1013685 . 1 423 0 -chrIV 1013264 1013565 HC_gene_2048_tx_93 1 - 1013264 1013565 . 1 302 0 -chrIV 1013264 1013685 HC_gene_2048_tx_69 35 - 1013264 1013685 . 1 422 0 -chrIV 1013265 1013685 HC_gene_2048_tx_70 2 - 1013265 1013685 . 1 421 0 -chrIV 1013267 1013685 HC_gene_2048_tx_71 8 - 1013267 1013685 . 1 419 0 -chrIV 1013268 1013565 HC_gene_2048_tx_94 1 - 1013268 1013565 . 1 298 0 -chrIV 1013268 1013685 HC_gene_2048_tx_72 33 - 1013268 1013685 . 1 418 0 -chrIV 1013269 1013685 HC_gene_2048_tx_73 5 - 1013269 1013685 . 1 417 0 -chrIV 1013399 1014286 MC_gene_1436_tx_1 1 + 1013399 1014286 . 1 888 0 -chrIV 1014120 1014569 HC_gene_2049_tx_1 11 - 1014120 1014569 . 1 450 0 -chrIV 1014120 1015860 HC_gene_2049_tx_3 11 - 1014120 1015860 . 1 1741 0 -chrIV 1014208 1014569 HC_gene_2049_tx_2 40 - 1014208 1014569 . 1 362 0 -chrIV 1014208 1015860 HC_gene_2049_tx_4 71 - 1014208 1015860 . 1 1653 0 -chrIV 1015065 1016966 MC_gene_1437_tx_1 1 + 1015065 1016966 . 1 1902 0 -chrIV 1015882 1016712 LC_gene_2050_tx_1 1 - 1015882 1016712 . 1 831 0 -chrIV 1017818 1018106 LC_gene_1438_tx_1 1 + 1017818 1018106 . 1 289 0 -chrIV 1018265 1019116 HC_gene_2051_tx_1 1 - 1018265 1019116 . 1 852 0 -chrIV 1019099 1020457 HC_gene_1439_tx_1 4 + 1019099 1020457 . 1 1359 0 -chrIV 1019300 1020457 HC_gene_1439_tx_2 30 + 1019300 1020457 . 1 1158 0 -chrIV 1019300 1020689 HC_gene_1439_tx_3 1 + 1019300 1020689 . 1 1390 0 -chrIV 1019300 1021769 HC_gene_1440_tx_1 1 + 1019300 1021769 . 1 2470 0 -chrIV 1019326 1020096 LC_gene_2052_tx_1 1 - 1019326 1020096 . 1 771 0 -chrIV 1019390 1020457 HC_gene_1439_tx_4 4 + 1019390 1020457 . 1 1068 0 -chrIV 1020364 1021729 LC_gene_2053_tx_1 1 - 1020364 1021729 . 1 1366 0 -chrIV 1020617 1021769 HC_gene_1440_tx_2 82 + 1020617 1021769 . 1 1153 0 -chrIV 1020617 1021769 HC_gene_1440_tx_3 1 + 1020617 1021769 . 3 500,154,362 0,561,791 -chrIV 1020617 1021769 HC_gene_1440_tx_4 1 + 1020617 1021769 . 2 1013,59 0,1094 -chrIV 1021782 1022353 HC_gene_2054_tx_1 13 - 1021782 1022353 . 1 572 0 -chrIV 1021782 1022436 HC_gene_2054_tx_2 4 - 1021782 1022436 . 1 655 0 -chrIV 1022681 1023107 HC_gene_1441_tx_1 1 + 1022681 1023107 . 1 427 0 -chrIV 1023277 1024762 HC_gene_2055_tx_1 12 - 1023277 1024762 . 1 1486 0 -chrIV 1023277 1024762 HC_gene_2055_tx_2 1 - 1023277 1024762 . 2 1102,77 0,1409 -chrIV 1024899 1025507 HC_gene_2056_tx_1 1 - 1024899 1025507 . 1 609 0 -chrIV 1024899 1025825 HC_gene_2056_tx_5 1 - 1024899 1025825 . 1 927 0 -chrIV 1024902 1025507 HC_gene_2056_tx_2 1 - 1024902 1025507 . 1 606 0 -chrIV 1024925 1025825 HC_gene_2056_tx_6 1 - 1024925 1025825 . 1 901 0 -chrIV 1024940 1025390 LC_gene_1442_tx_1 1 + 1024940 1025390 . 1 451 0 -chrIV 1024957 1025507 HC_gene_2056_tx_3 1 - 1024957 1025507 . 1 551 0 -chrIV 1024958 1025507 HC_gene_2056_tx_4 1 - 1024958 1025507 . 1 550 0 -chrIV 1026953 1029657 HC_gene_2057_tx_1 1 - 1026953 1029657 . 2 1139,1479 0,1226 -chrIV 1027234 1030170 HC_gene_2058_tx_1 1 - 1027234 1030170 . 1 2937 0 -chrIV 1027492 1030170 HC_gene_2058_tx_2 1 - 1027492 1030170 . 1 2679 0 -chrIV 1029198 1030275 HC_gene_2059_tx_1 1 - 1029198 1030275 . 1 1078 0 -chrIV 1029996 1030275 HC_gene_2059_tx_2 1 - 1029996 1030275 . 1 280 0 -chrIV 1030240 1031701 HC_gene_2060_tx_1 1 - 1030240 1031701 . 1 1462 0 -chrIV 1030264 1030502 LC_gene_1443_tx_1 1 + 1030264 1030502 . 1 239 0 -chrIV 1030462 1030813 HC_gene_2060_tx_3 16 - 1030462 1030813 . 1 352 0 -chrIV 1030462 1031377 HC_gene_2060_tx_4 11 - 1030462 1031377 . 1 916 0 -chrIV 1030462 1031701 HC_gene_2060_tx_2 69 - 1030462 1031701 . 1 1240 0 -chrIV 1030532 1031758 MC_gene_1444_tx_1 1 + 1030532 1031758 . 1 1227 0 -chrIV 1030943 1031701 HC_gene_2060_tx_5 1 - 1030943 1031701 . 1 759 0 -chrIV 1031739 1032068 MC_gene_2061_tx_1 1 - 1031739 1032068 . 1 330 0 -chrIV 1034623 1035244 HC_gene_1445_tx_1 2 + 1034623 1035244 . 1 622 0 -chrIV 1035143 1035591 HC_gene_2062_tx_1 57 - 1035143 1035591 . 1 449 0 -chrIV 1035143 1035791 HC_gene_2062_tx_2 5 - 1035143 1035791 . 1 649 0 -chrIV 1035782 1036960 HC_gene_1446_tx_1 3 + 1035782 1036960 . 1 1179 0 -chrIV 1035962 1036960 HC_gene_1446_tx_2 22 + 1035962 1036960 . 1 999 0 -chrIV 1035962 1038266 HC_gene_1446_tx_3 3 + 1035962 1038266 . 1 2305 0 -chrIV 1036499 1036960 HC_gene_1446_tx_4 6 + 1036499 1036960 . 1 462 0 -chrIV 1036499 1038266 HC_gene_1446_tx_5 1 + 1036499 1038266 . 1 1768 0 -chrIV 1036679 1036960 HC_gene_1446_tx_7 3 + 1036679 1036960 . 1 282 0 -chrIV 1036679 1038266 HC_gene_1446_tx_6 1 + 1036679 1038266 . 1 1588 0 -chrIV 1037148 1038266 HC_gene_1446_tx_8 54 + 1037148 1038266 . 1 1119 0 -chrIV 1037927 1038266 HC_gene_1446_tx_9 10 + 1037927 1038266 . 1 340 0 -chrIV 1038072 1038712 HC_gene_2063_tx_1 2 - 1038072 1038712 . 1 641 0 -chrIV 1038072 1039528 HC_gene_2063_tx_3 15 - 1038072 1039528 . 1 1457 0 -chrIV 1038197 1038712 HC_gene_2063_tx_2 3 - 1038197 1038712 . 1 516 0 -chrIV 1038197 1039528 HC_gene_2063_tx_4 37 - 1038197 1039528 . 1 1332 0 -chrIV 1038197 1039528 HC_gene_2063_tx_5 1 - 1038197 1039528 . 2 567,707 0,625 -chrIV 1038197 1039528 HC_gene_2063_tx_6 1 - 1038197 1039528 . 2 901,346 0,986 -chrIV 1039729 1042873 HC_gene_1447_tx_1 2 + 1039729 1042873 . 1 3145 0 -chrIV 1039729 1043010 HC_gene_1447_tx_2 4 + 1039729 1043010 . 1 3282 0 -chrIV 1039729 1043102 HC_gene_1447_tx_3 4 + 1039729 1043102 . 1 3374 0 -chrIV 1039729 1043165 HC_gene_1447_tx_4 3 + 1039729 1043165 . 1 3437 0 -chrIV 1039919 1043165 HC_gene_1447_tx_5 2 + 1039919 1043165 . 1 3247 0 -chrIV 1042580 1045144 HC_gene_2064_tx_1 2 - 1042580 1045144 . 1 2565 0 -chrIV 1042886 1044584 HC_gene_2064_tx_2 1 - 1042886 1044584 . 1 1699 0 -chrIV 1042886 1044977 HC_gene_2064_tx_3 2 - 1042886 1044977 . 1 2092 0 -chrIV 1042886 1045144 HC_gene_2064_tx_4 1 - 1042886 1045144 . 1 2259 0 -chrIV 1043066 1043609 HC_gene_2064_tx_14 5 - 1043066 1043609 . 1 544 0 -chrIV 1043066 1044584 HC_gene_2064_tx_5 11 - 1043066 1044584 . 1 1519 0 -chrIV 1043066 1044584 HC_gene_2064_tx_6 1 - 1043066 1044584 . 2 132,1341 0,178 -chrIV 1043066 1044849 HC_gene_2064_tx_7 4 - 1043066 1044849 . 1 1784 0 -chrIV 1043066 1044977 HC_gene_2064_tx_8 1 - 1043066 1044977 . 2 432,692 0,1220 -chrIV 1043066 1044977 HC_gene_2064_tx_9 2 - 1043066 1044977 . 1 1912 0 -chrIV 1043066 1045144 HC_gene_2064_tx_10 28 - 1043066 1045144 . 1 2079 0 -chrIV 1043066 1045144 HC_gene_2064_tx_11 1 - 1043066 1045144 . 3 1037,531,153 0,1099,1926 -chrIV 1043066 1045144 HC_gene_2064_tx_12 1 - 1043066 1045144 . 2 636,1362 0,717 -chrIV 1043066 1045144 HC_gene_2064_tx_13 1 - 1043066 1045144 . 2 1499,241 0,1838 -chrIV 1045369 1045791 MC_gene_1448_tx_1 1 + 1045369 1045791 . 1 423 0 -chrIV 1045390 1045645 HC_gene_2065_tx_1 9 - 1045390 1045645 . 1 256 0 -chrIV 1045390 1046037 HC_gene_2065_tx_2 17 - 1045390 1046037 . 1 648 0 -chrIV 1045390 1046558 HC_gene_2065_tx_4 12 - 1045390 1046558 . 1 1169 0 -chrIV 1045390 1047583 HC_gene_2065_tx_6 1 - 1045390 1047583 . 2 904,378 0,1816 -chrIV 1045390 1047583 HC_gene_2065_tx_7 1 - 1045390 1047583 . 1 2194 0 -chrIV 1045466 1046037 HC_gene_2065_tx_3 2 - 1045466 1046037 . 1 572 0 -chrIV 1045466 1046558 HC_gene_2065_tx_5 1 - 1045466 1046558 . 1 1093 0 -chrIV 1049354 1050221 HC_gene_2066_tx_1 2 - 1049354 1050221 . 1 868 0 -chrIV 1049762 1050520 MC_gene_1449_tx_1 1 + 1049762 1050520 . 1 759 0 -chrIV 1049856 1050328 MC_gene_1449_tx_2 1 + 1049856 1050328 . 1 473 0 -chrIV 1050404 1050913 HC_gene_2067_tx_1 17 - 1050404 1050913 . 1 510 0 -chrIV 1050404 1050995 HC_gene_2067_tx_2 3 - 1050404 1050995 . 1 592 0 -chrIV 1050404 1052262 HC_gene_2067_tx_3 1 - 1050404 1052262 . 2 1080,97 0,1762 -chrIV 1050404 1052262 HC_gene_2067_tx_4 44 - 1050404 1052262 . 1 1859 0 -chrIV 1050404 1052262 HC_gene_2067_tx_5 1 - 1050404 1052262 . 2 710,1066 0,793 -chrIV 1050404 1052262 HC_gene_2067_tx_6 1 - 1050404 1052262 . 2 805,961 0,898 -chrIV 1050404 1052262 HC_gene_2067_tx_7 1 - 1050404 1052262 . 2 831,886 0,973 -chrIV 1050404 1052262 HC_gene_2067_tx_8 1 - 1050404 1052262 . 2 688,1019 0,840 -chrIV 1050404 1052262 HC_gene_2067_tx_9 1 - 1050404 1052262 . 2 765,1019 0,840 -chrIV 1050404 1052262 HC_gene_2067_tx_10 1 - 1050404 1052262 . 2 953,854 0,1005 -chrIV 1052462 1053063 HC_gene_2068_tx_1 2 - 1052462 1053063 . 1 602 0 -chrIV 1052462 1054910 HC_gene_2068_tx_3 3 - 1052462 1054910 . 1 2449 0 -chrIV 1052540 1053063 HC_gene_2068_tx_2 10 - 1052540 1053063 . 1 524 0 -chrIV 1052540 1053560 HC_gene_2068_tx_6 1 - 1052540 1053560 . 1 1021 0 -chrIV 1052540 1054721 HC_gene_2068_tx_4 1 - 1052540 1054721 . 1 2182 0 -chrIV 1052540 1054910 HC_gene_2068_tx_5 8 - 1052540 1054910 . 1 2371 0 -chrIV 1054829 1055831 MC_gene_2069_tx_1 1 - 1054829 1055831 . 1 1003 0 -chrIV 1055158 1055982 HC_gene_1450_tx_1 109 + 1055158 1055982 . 1 825 0 -chrIV 1055158 1056060 HC_gene_1450_tx_2 11 + 1055158 1056060 . 1 903 0 -chrIV 1055361 1055982 HC_gene_1450_tx_3 8 + 1055361 1055982 . 1 622 0 -chrIV 1055492 1055982 HC_gene_1450_tx_4 8 + 1055492 1055982 . 1 491 0 -chrIV 1055561 1055982 HC_gene_1450_tx_5 12 + 1055561 1055982 . 1 422 0 -chrIV 1055561 1056060 HC_gene_1450_tx_6 2 + 1055561 1056060 . 1 500 0 -chrIV 1056528 1057726 HC_gene_1451_tx_1 269 + 1056528 1057726 . 1 1199 0 -chrIV 1056734 1057726 HC_gene_1451_tx_2 27 + 1056734 1057726 . 1 993 0 -chrIV 1057041 1057726 HC_gene_1451_tx_3 33 + 1057041 1057726 . 1 686 0 -chrIV 1057185 1057726 HC_gene_1451_tx_4 45 + 1057185 1057726 . 1 542 0 -chrIV 1057301 1057726 HC_gene_1451_tx_5 74 + 1057301 1057726 . 1 426 0 -chrIV 1057993 1058933 HC_gene_2070_tx_1 288 - 1057993 1058933 . 1 941 0 -chrIV 1059566 1061327 HC_gene_1452_tx_1 50 + 1059566 1061327 . 1 1762 0 -chrIV 1059566 1061327 HC_gene_1452_tx_2 1 + 1059566 1061327 . 2 340,1301 0,461 -chrIV 1059566 1061327 HC_gene_1452_tx_3 1 + 1059566 1061327 . 2 924,771 0,991 -chrIV 1059566 1061327 HC_gene_1452_tx_4 1 + 1059566 1061327 . 2 904,785 0,977 -chrIV 1059566 1061327 HC_gene_1452_tx_5 1 + 1059566 1061327 . 2 1127,586 0,1176 -chrIV 1059566 1061497 HC_gene_1452_tx_6 16 + 1059566 1061497 . 1 1932 0 -chrIV 1059566 1061497 HC_gene_1452_tx_7 1 + 1059566 1061497 . 2 948,837 0,1095 -chrIV 1061200 1062866 HC_gene_2071_tx_1 6 - 1061200 1062866 . 1 1667 0 -chrIV 1061363 1062866 HC_gene_2071_tx_2 3 - 1061363 1062866 . 1 1504 0 -chrIV 1061370 1062866 HC_gene_2071_tx_3 5 - 1061370 1062866 . 1 1497 0 -chrIV 1061371 1062866 HC_gene_2071_tx_4 1 - 1061371 1062866 . 1 1496 0 -chrIV 1061388 1062866 HC_gene_2071_tx_5 1 - 1061388 1062866 . 1 1479 0 -chrIV 1061389 1062866 HC_gene_2071_tx_6 2 - 1061389 1062866 . 1 1478 0 -chrIV 1061390 1062866 HC_gene_2071_tx_7 2 - 1061390 1062866 . 1 1477 0 -chrIV 1061396 1062866 HC_gene_2071_tx_8 1 - 1061396 1062866 . 1 1471 0 -chrIV 1061397 1062866 HC_gene_2071_tx_9 3 - 1061397 1062866 . 1 1470 0 -chrIV 1061398 1062866 HC_gene_2071_tx_10 4 - 1061398 1062866 . 1 1469 0 -chrIV 1061398 1062866 HC_gene_2071_tx_11 1 - 1061398 1062866 . 2 985,360 0,1109 -chrIV 1061398 1062866 HC_gene_2071_tx_12 1 - 1061398 1062866 . 2 256,334 0,1135 -chrIV 1061399 1062866 HC_gene_2071_tx_13 3 - 1061399 1062866 . 1 1468 0 -chrIV 1061399 1062866 HC_gene_2071_tx_14 1 - 1061399 1062866 . 2 585,818 0,650 -chrIV 1061400 1062866 HC_gene_2071_tx_15 1 - 1061400 1062866 . 1 1467 0 -chrIV 1061401 1062866 HC_gene_2071_tx_16 1 - 1061401 1062866 . 1 1466 0 -chrIV 1061403 1062866 HC_gene_2071_tx_17 1 - 1061403 1062866 . 2 681,422 0,1042 -chrIV 1061413 1062866 HC_gene_2071_tx_18 2 - 1061413 1062866 . 1 1454 0 -chrIV 1063292 1067476 HC_gene_1453_tx_1 1 + 1063292 1067476 . 1 4185 0 -chrIV 1063292 1067560 HC_gene_1453_tx_2 6 + 1063292 1067560 . 1 4269 0 -chrIV 1066951 1067468 LC_gene_2072_tx_1 1 - 1066951 1067468 . 1 518 0 -chrIV 1067687 1068465 HC_gene_1454_tx_1 70 + 1067687 1068465 . 1 779 0 -chrIV 1067687 1068597 HC_gene_1454_tx_2 5 + 1067687 1068597 . 1 911 0 -chrIV 1067945 1068465 HC_gene_1454_tx_3 11 + 1067945 1068465 . 1 521 0 -chrIV 1068588 1071704 MC_gene_2073_tx_1 1 - 1068588 1071704 . 1 3117 0 -chrIV 1068619 1071499 MC_gene_2073_tx_2 1 - 1068619 1071499 . 1 2881 0 -chrIV 1069517 1071388 MC_gene_2073_tx_3 1 - 1069517 1071388 . 1 1872 0 -chrIV 1071258 1071889 MC_gene_1455_tx_1 1 + 1071258 1071889 . 1 632 0 -chrIV 1071802 1072095 HC_gene_2074_tx_1 64 - 1071802 1072095 . 1 294 0 -chrIV 1071802 1072155 HC_gene_2074_tx_2 17 - 1071802 1072155 . 1 354 0 -chrIV 1071802 1072242 HC_gene_2074_tx_3 59 - 1071802 1072242 . 1 441 0 -chrIV 1071802 1072483 HC_gene_2074_tx_4 60 - 1071802 1072483 . 1 682 0 -chrIV 1071802 1072574 HC_gene_2074_tx_5 384 - 1071802 1072574 . 1 773 0 -chrIV 1071891 1072812 HC_gene_1456_tx_1 2 + 1071891 1072812 . 1 922 0 -chrIV 1072666 1073097 HC_gene_2075_tx_1 14 - 1072666 1073097 . 1 432 0 -chrIV 1072666 1073481 HC_gene_2075_tx_2 16 - 1072666 1073481 . 2 647,80 0,736 -chrIV 1072666 1073481 HC_gene_2075_tx_3 4 - 1072666 1073481 . 1 816 0 -chrIV 1072666 1073481 HC_gene_2075_tx_4 14 - 1072666 1073481 . 2 649,76 0,740 -chrIV 1072666 1073481 HC_gene_2075_tx_5 1 - 1072666 1073481 . 2 589,76 0,740 -chrIV 1073395 1075227 HC_gene_2076_tx_1 2 - 1073395 1075227 . 1 1833 0 -chrIV 1073554 1075227 HC_gene_2076_tx_2 1 - 1073554 1075227 . 1 1674 0 -chrIV 1073637 1075227 HC_gene_2076_tx_3 14 - 1073637 1075227 . 1 1591 0 -chrIV 1073637 1075227 HC_gene_2076_tx_4 1 - 1073637 1075227 . 2 497,975 0,616 -chrIV 1074172 1074805 LC_gene_1457_tx_1 1 + 1074172 1074805 . 1 634 0 -chrIV 1075772 1077111 LC_gene_2077_tx_1 1 - 1075772 1077111 . 1 1340 0 -chrIV 1075821 1078006 HC_gene_1458_tx_1 16 + 1075821 1078006 . 1 2186 0 -chrIV 1077450 1078489 HC_gene_2078_tx_1 8 - 1077450 1078489 . 1 1040 0 -chrIV 1077918 1078489 HC_gene_2078_tx_2 79 - 1077918 1078489 . 1 572 0 -chrIV 1078588 1080249 HC_gene_2079_tx_1 1 - 1078588 1080249 . 1 1662 0 -chrIV 1078657 1079270 HC_gene_2079_tx_13 32 - 1078657 1079270 . 1 614 0 -chrIV 1078657 1080249 HC_gene_2079_tx_2 91 - 1078657 1080249 . 1 1593 0 -chrIV 1078657 1080249 HC_gene_2079_tx_3 1 - 1078657 1080249 . 2 815,559 0,1034 -chrIV 1078657 1080249 HC_gene_2079_tx_4 1 - 1078657 1080249 . 2 673,870 0,723 -chrIV 1078657 1080249 HC_gene_2079_tx_5 1 - 1078657 1080249 . 2 757,197 0,1396 -chrIV 1078657 1080249 HC_gene_2079_tx_6 1 - 1078657 1080249 . 2 695,95 0,1498 -chrIV 1078657 1080249 HC_gene_2079_tx_7 1 - 1078657 1080249 . 2 977,318 0,1275 -chrIV 1078657 1080249 HC_gene_2079_tx_8 1 - 1078657 1080249 . 2 1129,155 0,1438 -chrIV 1078657 1080249 HC_gene_2079_tx_9 1 - 1078657 1080249 . 2 1234,197 0,1396 -chrIV 1078657 1080249 HC_gene_2079_tx_10 1 - 1078657 1080249 . 2 759,441 0,1152 -chrIV 1078657 1080249 HC_gene_2079_tx_11 1 - 1078657 1080249 . 2 772,155 0,1438 -chrIV 1078657 1080249 HC_gene_2079_tx_12 1 - 1078657 1080249 . 2 1292,230 0,1363 -chrIV 1078739 1079463 LC_gene_1459_tx_1 1 + 1078739 1079463 . 1 725 0 -chrIV 1080796 1081067 HC_gene_1460_tx_1 11 + 1080796 1081067 . 1 272 0 -chrIV 1080921 1082270 HC_gene_2080_tx_1 3 - 1080921 1082270 . 1 1350 0 -chrIV 1080921 1082335 HC_gene_2080_tx_2 6 - 1080921 1082335 . 1 1415 0 -chrIV 1080921 1084595 HC_gene_2080_tx_3 2 - 1080921 1084595 . 1 3675 0 -chrIV 1081211 1081660 LC_gene_1461_tx_1 1 + 1081211 1081660 . 1 450 0 -chrIV 1085039 1087095 HC_gene_1462_tx_1 20 + 1085039 1087095 . 1 2057 0 -chrIV 1087548 1089042 HC_gene_1463_tx_1 11 + 1087548 1089042 . 1 1495 0 -chrIV 1087548 1089098 HC_gene_1463_tx_2 13 + 1087548 1089098 . 1 1551 0 -chrIV 1088506 1089042 HC_gene_1463_tx_3 2 + 1088506 1089042 . 1 537 0 -chrIV 1088506 1089098 HC_gene_1463_tx_4 4 + 1088506 1089098 . 1 593 0 -chrIV 1089018 1089671 HC_gene_2081_tx_1 5 - 1089018 1089671 . 1 654 0 -chrIV 1089018 1090099 HC_gene_2081_tx_2 20 - 1089018 1090099 . 1 1082 0 -chrIV 1089018 1092547 HC_gene_2081_tx_3 1 - 1089018 1092547 . 1 3530 0 -chrIV 1090454 1091078 LC_gene_1464_tx_1 1 + 1090454 1091078 . 1 625 0 -chrIV 1092664 1093065 HC_gene_2082_tx_1 1 - 1092664 1093065 . 1 402 0 -chrIV 1092664 1093588 HC_gene_2082_tx_2 16 - 1092664 1093588 . 1 925 0 -chrIV 1092733 1093471 HC_gene_1465_tx_1 2 + 1092733 1093471 . 1 739 0 -chrIV 1093758 1095254 HC_gene_1466_tx_1 37 + 1093758 1095254 . 1 1497 0 -chrIV 1093758 1095254 HC_gene_1466_tx_2 1 + 1093758 1095254 . 2 787,631 0,866 -chrIV 1094755 1095254 HC_gene_1466_tx_3 7 + 1094755 1095254 . 1 500 0 -chrIV 1095627 1096124 MC_gene_1467_tx_1 1 + 1095627 1096124 . 1 498 0 -chrIV 1095652 1096563 MC_gene_2083_tx_1 1 - 1095652 1096563 . 1 912 0 -chrIV 1097132 1101694 MC_gene_1468_tx_1 1 + 1097132 1101694 . 1 4563 0 -chrIV 1098173 1102019 MC_gene_1469_tx_1 1 + 1098173 1102019 . 1 3847 0 -chrIV 1101131 1101858 LC_gene_2084_tx_1 1 - 1101131 1101858 . 1 728 0 -chrIV 1102054 1103553 HC_gene_2085_tx_1 2 - 1102054 1103553 . 1 1500 0 -chrIV 1102149 1103557 HC_gene_1470_tx_1 5 + 1102149 1103557 . 1 1409 0 -chrIV 1102149 1103557 HC_gene_1470_tx_2 1 + 1102149 1103557 . 2 972,403 0,1006 -chrIV 1103685 1105053 HC_gene_1471_tx_1 6 + 1103685 1105053 . 2 125,1161 0,208 -chrIV 1103685 1105053 HC_gene_1471_tx_2 3 + 1103685 1105053 . 1 1369 0 -chrIV 1103913 1105053 HC_gene_1471_tx_3 2 + 1103913 1105053 . 1 1141 0 -chrIV 1103947 1105647 HC_gene_2086_tx_1 1 - 1103947 1105647 . 1 1701 0 -chrIV 1104618 1105875 HC_gene_2086_tx_2 1 - 1104618 1105875 . 1 1258 0 -chrIV 1104870 1105585 HC_gene_2086_tx_3 5 - 1104870 1105585 . 1 716 0 -chrIV 1104870 1105647 HC_gene_2086_tx_4 4 - 1104870 1105647 . 1 778 0 -chrIV 1104870 1105875 HC_gene_2086_tx_5 19 - 1104870 1105875 . 1 1006 0 -chrIV 1105999 1106421 HC_gene_2087_tx_1 8 - 1105999 1106421 . 1 423 0 -chrIV 1106069 1106402 MC_gene_1472_tx_1 1 + 1106069 1106402 . 1 334 0 -chrIV 1108096 1108522 HC_gene_2088_tx_1 4 - 1108096 1108522 . 1 427 0 -chrIV 1108193 1108522 HC_gene_2088_tx_2 175 - 1108193 1108522 . 1 330 0 -chrIV 1108245 1109998 HC_gene_1473_tx_1 3 + 1108245 1109998 . 1 1754 0 -chrIV 1108660 1109998 HC_gene_1473_tx_2 113 + 1108660 1109998 . 1 1339 0 -chrIV 1108660 1109998 HC_gene_1473_tx_3 1 + 1108660 1109998 . 2 141,1149 0,190 -chrIV 1108660 1109998 HC_gene_1473_tx_4 1 + 1108660 1109998 . 2 843,453 0,886 -chrIV 1109288 1109998 HC_gene_1473_tx_5 14 + 1109288 1109998 . 1 711 0 -chrIV 1110286 1110584 MC_gene_2089_tx_1 1 - 1110286 1110584 . 1 299 0 -chrIV 1110562 1111754 HC_gene_1474_tx_1 46 + 1110562 1111754 . 1 1193 0 -chrIV 1111777 1112335 HC_gene_2090_tx_1 608 - 1111777 1112335 . 1 559 0 -chrIV 1111873 1112335 HC_gene_2090_tx_2 30 - 1111873 1112335 . 1 463 0 -chrIV 1112280 1112741 HC_gene_2091_tx_1 11 - 1112280 1112741 . 1 462 0 -chrIV 1112280 1114057 HC_gene_2091_tx_2 7 - 1112280 1114057 . 1 1778 0 -chrIV 1112453 1114117 LC_gene_1475_tx_1 1 + 1112453 1114117 . 1 1665 0 -chrIV 1114250 1114731 HC_gene_2092_tx_1 18 - 1114250 1114731 . 1 482 0 -chrIV 1114250 1114814 HC_gene_2092_tx_2 13 - 1114250 1114814 . 1 565 0 -chrIV 1114250 1116717 HC_gene_2092_tx_3 41 - 1114250 1116717 . 1 2468 0 -chrIV 1114250 1116717 HC_gene_2092_tx_4 1 - 1114250 1116717 . 3 200,565,702 0,397,1766 -chrIV 1114250 1116717 HC_gene_2092_tx_5 1 - 1114250 1116717 . 2 977,1341 0,1127 -chrIV 1114250 1116717 HC_gene_2092_tx_6 1 - 1114250 1116717 . 2 1013,1323 0,1145 -chrIV 1114250 1116717 HC_gene_2092_tx_7 1 - 1114250 1116717 . 2 2285,120 0,2348 -chrIV 1114356 1114879 MC_gene_1476_tx_1 1 + 1114356 1114879 . 1 524 0 -chrIV 1117116 1120298 HC_gene_1477_tx_1 1 + 1117116 1120298 . 1 3183 0 -chrIV 1120464 1124126 HC_gene_2093_tx_1 2 - 1120464 1124126 . 1 3663 0 -chrIV 1120464 1124687 HC_gene_2093_tx_2 1 - 1120464 1124687 . 1 4224 0 -chrIV 1120545 1125112 HC_gene_2093_tx_3 1 - 1120545 1125112 . 1 4568 0 -chrIV 1125240 1125480 HC_gene_2094_tx_1 23 - 1125240 1125480 . 1 241 0 -chrIV 1125240 1125608 HC_gene_2094_tx_2 24 - 1125240 1125608 . 1 369 0 -chrIV 1125240 1125739 HC_gene_2094_tx_3 30 - 1125240 1125739 . 1 500 0 -chrIV 1125240 1126086 HC_gene_2094_tx_4 227 - 1125240 1126086 . 1 847 0 -chrIV 1125357 1126134 LC_gene_1478_tx_1 1 + 1125357 1126134 . 1 778 0 -chrIV 1126188 1126883 HC_gene_2095_tx_1 5 - 1126188 1126883 . 1 696 0 -chrIV 1126188 1127404 HC_gene_2095_tx_2 6 - 1126188 1127404 . 1 1217 0 -chrIV 1126188 1127618 HC_gene_2095_tx_3 28 - 1126188 1127618 . 1 1431 0 -chrIV 1126188 1127618 HC_gene_2095_tx_4 1 - 1126188 1127618 . 2 556,831 0,600 -chrIV 1126188 1127618 HC_gene_2095_tx_5 1 - 1126188 1127618 . 2 911,174 0,1257 -chrIV 1127808 1129448 HC_gene_1479_tx_1 5 + 1127808 1129448 . 1 1641 0 -chrIV 1127808 1129577 HC_gene_1479_tx_2 10 + 1127808 1129577 . 1 1770 0 -chrIV 1127808 1129577 HC_gene_1479_tx_3 1 + 1127808 1129577 . 2 1608,101 0,1669 -chrIV 1127835 1129577 HC_gene_1479_tx_4 1 + 1127835 1129577 . 1 1743 0 -chrIV 1127847 1129577 HC_gene_1479_tx_5 1 + 1127847 1129577 . 1 1731 0 -chrIV 1129517 1130819 LC_gene_2096_tx_1 1 - 1129517 1130819 . 1 1303 0 -chrIV 1129557 1130940 HC_gene_1480_tx_1 24 + 1129557 1130940 . 1 1384 0 -chrIV 1129557 1130940 HC_gene_1480_tx_2 1 + 1129557 1130940 . 2 548,791 0,593 -chrIV 1130790 1131184 HC_gene_2097_tx_1 3 - 1130790 1131184 . 1 395 0 -chrIV 1130978 1132724 HC_gene_1481_tx_1 1 + 1130978 1132724 . 1 1747 0 -chrIV 1130978 1132976 HC_gene_1481_tx_2 1 + 1130978 1132976 . 1 1999 0 -chrIV 1130978 1133144 HC_gene_1481_tx_3 6 + 1130978 1133144 . 1 2167 0 -chrIV 1131404 1132976 HC_gene_1481_tx_4 2 + 1131404 1132976 . 1 1573 0 -chrIV 1131404 1133144 HC_gene_1481_tx_5 1 + 1131404 1133144 . 1 1741 0 -chrIV 1131676 1133144 HC_gene_1481_tx_6 3 + 1131676 1133144 . 1 1469 0 -chrIV 1133043 1135209 HC_gene_2098_tx_1 2 - 1133043 1135209 . 1 2167 0 -chrIV 1133043 1135308 HC_gene_2098_tx_2 2 - 1133043 1135308 . 1 2266 0 -chrIV 1133043 1135308 HC_gene_2098_tx_3 1 - 1133043 1135308 . 2 976,1242 0,1024 -chrIV 1133043 1135466 HC_gene_2098_tx_4 10 - 1133043 1135466 . 1 2424 0 -chrIV 1133043 1135466 HC_gene_2098_tx_5 1 - 1133043 1135466 . 2 1090,1197 0,1227 -chrIV 1134144 1135308 HC_gene_2098_tx_6 1 - 1134144 1135308 . 1 1165 0 -chrIV 1135767 1137002 HC_gene_1482_tx_1 1 + 1135767 1137002 . 1 1236 0 -chrIV 1137250 1139859 LC_gene_2099_tx_1 1 - 1137250 1139859 . 1 2610 0 -chrIV 1139205 1140598 HC_gene_1483_tx_1 3 + 1139205 1140598 . 1 1394 0 -chrIV 1139379 1140598 HC_gene_1483_tx_2 5 + 1139379 1140598 . 1 1220 0 -chrIV 1139524 1140598 HC_gene_1483_tx_3 8 + 1139524 1140598 . 1 1075 0 -chrIV 1139905 1140598 HC_gene_1483_tx_4 8 + 1139905 1140598 . 1 694 0 -chrIV 1140810 1141128 HC_gene_1484_tx_1 3 + 1140810 1141128 . 1 319 0 -chrIV 1143373 1144924 HC_gene_1485_tx_1 5 + 1143373 1144924 . 1 1552 0 -chrIV 1144452 1144924 HC_gene_1485_tx_2 25 + 1144452 1144924 . 1 473 0 -chrIV 1144595 1144924 HC_gene_1485_tx_3 16 + 1144595 1144924 . 1 330 0 -chrIV 1144827 1145619 LC_gene_2100_tx_1 1 - 1144827 1145619 . 1 793 0 -chrIV 1145068 1146132 HC_gene_1486_tx_1 24 + 1145068 1146132 . 1 1065 0 -chrIV 1145068 1146237 HC_gene_1486_tx_2 1 + 1145068 1146237 . 1 1170 0 -chrIV 1145252 1146132 HC_gene_1486_tx_3 9 + 1145252 1146132 . 1 881 0 -chrIV 1145252 1146237 HC_gene_1486_tx_4 1 + 1145252 1146237 . 1 986 0 -chrIV 1145334 1146132 HC_gene_1486_tx_5 1 + 1145334 1146132 . 1 799 0 -chrIV 1146239 1147240 HC_gene_1487_tx_1 1 + 1146239 1147240 . 2 43,903 0,99 -chrIV 1146269 1147240 HC_gene_1487_tx_2 57 + 1146269 1147240 . 1 972 0 -chrIV 1146269 1147240 HC_gene_1487_tx_3 1 + 1146269 1147240 . 2 766,68 0,904 -chrIV 1146269 1147240 HC_gene_1487_tx_4 1 + 1146269 1147240 . 2 226,660 0,312 -chrIV 1146575 1147240 HC_gene_1487_tx_5 14 + 1146575 1147240 . 1 666 0 -chrIV 1146815 1147240 HC_gene_1487_tx_6 7 + 1146815 1147240 . 1 426 0 -chrIV 1147214 1149254 HC_gene_2101_tx_1 2 - 1147214 1149254 . 1 2041 0 -chrIV 1147214 1149526 HC_gene_2101_tx_2 6 - 1147214 1149526 . 1 2313 0 -chrIV 1147214 1149526 HC_gene_2101_tx_3 1 - 1147214 1149526 . 2 1528,664 0,1649 -chrIV 1147216 1149562 LC_gene_1488_tx_1 1 + 1147216 1149562 . 1 2347 0 -chrIV 1149858 1150488 HC_gene_2102_tx_1 1 - 1149858 1150488 . 1 631 0 -chrIV 1149858 1150502 HC_gene_2102_tx_2 1 - 1149858 1150502 . 1 645 0 -chrIV 1149858 1150509 HC_gene_2102_tx_3 3 - 1149858 1150509 . 1 652 0 -chrIV 1149858 1150513 HC_gene_2102_tx_4 1 - 1149858 1150513 . 1 656 0 -chrIV 1149858 1150515 HC_gene_2102_tx_5 1 - 1149858 1150515 . 1 658 0 -chrIV 1149858 1150516 HC_gene_2102_tx_6 1 - 1149858 1150516 . 1 659 0 -chrIV 1149858 1150517 HC_gene_2102_tx_7 1 - 1149858 1150517 . 1 660 0 -chrIV 1149858 1150518 HC_gene_2102_tx_8 1 - 1149858 1150518 . 1 661 0 -chrIV 1149858 1150520 HC_gene_2102_tx_9 1 - 1149858 1150520 . 1 663 0 -chrIV 1149858 1150521 HC_gene_2102_tx_10 1 - 1149858 1150521 . 1 664 0 -chrIV 1149858 1150522 HC_gene_2102_tx_11 3 - 1149858 1150522 . 1 665 0 -chrIV 1149858 1150525 HC_gene_2102_tx_12 1 - 1149858 1150525 . 1 668 0 -chrIV 1149858 1150526 HC_gene_2102_tx_13 1 - 1149858 1150526 . 1 669 0 -chrIV 1149858 1150527 HC_gene_2102_tx_14 1 - 1149858 1150527 . 1 670 0 -chrIV 1149858 1150528 HC_gene_2102_tx_15 3 - 1149858 1150528 . 1 671 0 -chrIV 1149858 1150532 HC_gene_2102_tx_16 1 - 1149858 1150532 . 1 675 0 -chrIV 1149858 1150541 HC_gene_2102_tx_17 2 - 1149858 1150541 . 1 684 0 -chrIV 1149858 1150544 HC_gene_2102_tx_18 1 - 1149858 1150544 . 1 687 0 -chrIV 1149858 1150545 HC_gene_2102_tx_19 1 - 1149858 1150545 . 1 688 0 -chrIV 1149858 1150548 HC_gene_2102_tx_20 1 - 1149858 1150548 . 1 691 0 -chrIV 1149858 1150561 HC_gene_2102_tx_21 158 - 1149858 1150561 . 1 704 0 -chrIV 1149997 1150597 LC_gene_1489_tx_1 1 + 1149997 1150597 . 1 601 0 -chrIV 1151010 1151477 LC_gene_2103_tx_1 1 - 1151010 1151477 . 1 468 0 -chrIV 1151145 1151779 LC_gene_1490_tx_1 1 + 1151145 1151779 . 1 635 0 -chrIV 1151551 1152276 HC_gene_2104_tx_1 1 - 1151551 1152276 . 1 726 0 -chrIV 1151551 1153648 HC_gene_2104_tx_2 1 - 1151551 1153648 . 1 2098 0 -chrIV 1151706 1152276 HC_gene_2104_tx_22 117 - 1151706 1152276 . 1 571 0 -chrIV 1151706 1152358 HC_gene_2104_tx_23 25 - 1151706 1152358 . 1 653 0 -chrIV 1151706 1152447 HC_gene_2104_tx_24 42 - 1151706 1152447 . 1 742 0 -chrIV 1151706 1152996 HC_gene_2104_tx_3 11 - 1151706 1152996 . 1 1291 0 -chrIV 1151706 1152996 HC_gene_2104_tx_4 1 - 1151706 1152996 . 2 523,703 0,588 -chrIV 1151706 1153058 HC_gene_2104_tx_5 25 - 1151706 1153058 . 1 1353 0 -chrIV 1151706 1153353 HC_gene_2104_tx_6 20 - 1151706 1153353 . 1 1648 0 -chrIV 1151706 1153353 HC_gene_2104_tx_7 1 - 1151706 1153353 . 3 280,676,260 0,443,1388 -chrIV 1151706 1153425 HC_gene_2104_tx_8 4 - 1151706 1153425 . 1 1720 0 -chrIV 1151706 1153637 HC_gene_2104_tx_9 1 - 1151706 1153637 . 2 494,1371 0,561 -chrIV 1151706 1153648 HC_gene_2104_tx_10 188 - 1151706 1153648 . 1 1943 0 -chrIV 1151706 1153648 HC_gene_2104_tx_11 1 - 1151706 1153648 . 2 1284,538 0,1405 -chrIV 1151706 1153648 HC_gene_2104_tx_12 1 - 1151706 1153648 . 2 838,1056 0,887 -chrIV 1151706 1153648 HC_gene_2104_tx_13 1 - 1151706 1153648 . 2 640,1094 0,849 -chrIV 1151706 1153648 HC_gene_2104_tx_14 1 - 1151706 1153648 . 2 838,1049 0,894 -chrIV 1151706 1153648 HC_gene_2104_tx_15 1 - 1151706 1153648 . 2 858,1049 0,894 -chrIV 1151706 1153648 HC_gene_2104_tx_16 1 - 1151706 1153648 . 2 849,985 0,958 -chrIV 1151706 1153648 HC_gene_2104_tx_17 1 - 1151706 1153648 . 2 838,1017 0,926 -chrIV 1151706 1153648 HC_gene_2104_tx_18 1 - 1151706 1153648 . 2 823,1036 0,907 -chrIV 1151706 1153648 HC_gene_2104_tx_19 1 - 1151706 1153648 . 2 699,1017 0,926 -chrIV 1151706 1153648 HC_gene_2104_tx_20 1 - 1151706 1153648 . 2 266,1532 0,411 -chrIV 1151706 1153648 HC_gene_2104_tx_21 1 - 1151706 1153648 . 2 1095,767 0,1176 -chrIV 1153541 1154162 MC_gene_1491_tx_1 1 + 1153541 1154162 . 1 622 0 -chrIV 1154053 1156015 HC_gene_2105_tx_1 1 - 1154053 1156015 . 1 1963 0 -chrIV 1154054 1156015 HC_gene_2105_tx_2 3 - 1154054 1156015 . 1 1962 0 -chrIV 1154055 1156015 HC_gene_2105_tx_3 1 - 1154055 1156015 . 1 1961 0 -chrIV 1154056 1156015 HC_gene_2105_tx_4 1 - 1154056 1156015 . 2 1729,169 0,1791 -chrIV 1154056 1156015 HC_gene_2105_tx_5 1 - 1154056 1156015 . 1 1960 0 -chrIV 1154060 1156015 HC_gene_2105_tx_6 2 - 1154060 1156015 . 1 1956 0 -chrIV 1154061 1156015 HC_gene_2105_tx_7 1 - 1154061 1156015 . 2 865,1016 0,939 -chrIV 1154061 1156015 HC_gene_2105_tx_8 10 - 1154061 1156015 . 1 1955 0 -chrIV 1154062 1156015 HC_gene_2105_tx_9 2 - 1154062 1156015 . 1 1954 0 -chrIV 1154064 1156015 HC_gene_2105_tx_10 14 - 1154064 1156015 . 1 1952 0 -chrIV 1154064 1156015 HC_gene_2105_tx_11 1 - 1154064 1156015 . 2 417,1267 0,685 -chrIV 1154065 1156015 HC_gene_2105_tx_12 1 - 1154065 1156015 . 1 1951 0 -chrIV 1154066 1156015 HC_gene_2105_tx_13 9 - 1154066 1156015 . 1 1950 0 -chrIV 1154066 1156015 HC_gene_2105_tx_14 1 - 1154066 1156015 . 2 1188,123 0,1827 -chrIV 1154066 1156083 HC_gene_2105_tx_15 2 - 1154066 1156083 . 1 2018 0 -chrIV 1154067 1156015 HC_gene_2105_tx_16 38 - 1154067 1156015 . 1 1949 0 -chrIV 1154067 1156015 HC_gene_2105_tx_17 1 - 1154067 1156015 . 2 1197,707 0,1242 -chrIV 1154067 1156015 HC_gene_2105_tx_18 1 - 1154067 1156015 . 2 1536,89 0,1860 -chrIV 1154067 1156083 HC_gene_2105_tx_19 1 - 1154067 1156083 . 1 2017 0 -chrIV 1154068 1156015 HC_gene_2105_tx_20 13 - 1154068 1156015 . 1 1948 0 -chrIV 1154069 1156015 HC_gene_2105_tx_21 6 - 1154069 1156015 . 1 1947 0 -chrIV 1154070 1156015 HC_gene_2105_tx_22 1 - 1154070 1156015 . 1 1946 0 -chrIV 1154071 1156015 HC_gene_2105_tx_23 1 - 1154071 1156015 . 1 1945 0 -chrIV 1154072 1156015 HC_gene_2105_tx_24 15 - 1154072 1156015 . 1 1944 0 -chrIV 1154073 1156015 HC_gene_2105_tx_25 1 - 1154073 1156015 . 1 1943 0 -chrIV 1154073 1156234 HC_gene_2105_tx_26 1 - 1154073 1156234 . 1 2162 0 -chrIV 1154074 1156015 HC_gene_2105_tx_27 1 - 1154074 1156015 . 1 1942 0 -chrIV 1154075 1156015 HC_gene_2105_tx_28 3 - 1154075 1156015 . 1 1941 0 -chrIV 1154076 1156015 HC_gene_2105_tx_29 28 - 1154076 1156015 . 1 1940 0 -chrIV 1154076 1156015 HC_gene_2105_tx_30 1 - 1154076 1156015 . 2 1099,652 0,1288 -chrIV 1154076 1156015 HC_gene_2105_tx_31 1 - 1154076 1156015 . 2 818,1050 0,890 -chrIV 1154076 1156015 HC_gene_2105_tx_32 1 - 1154076 1156015 . 2 147,1645 0,295 -chrIV 1154076 1156083 HC_gene_2105_tx_33 1 - 1154076 1156083 . 1 2008 0 -chrIV 1154077 1156015 HC_gene_2105_tx_34 65 - 1154077 1156015 . 1 1939 0 -chrIV 1154077 1156015 HC_gene_2105_tx_35 1 - 1154077 1156015 . 2 1598,269 0,1670 -chrIV 1154077 1156083 HC_gene_2105_tx_36 1 - 1154077 1156083 . 1 2007 0 -chrIV 1154078 1156015 HC_gene_2105_tx_37 22 - 1154078 1156015 . 1 1938 0 -chrIV 1154078 1156015 HC_gene_2105_tx_38 1 - 1154078 1156015 . 2 1422,403 0,1535 -chrIV 1154079 1156015 HC_gene_2105_tx_39 23 - 1154079 1156015 . 1 1937 0 -chrIV 1154079 1156015 HC_gene_2105_tx_40 1 - 1154079 1156015 . 2 932,169 0,1768 -chrIV 1154079 1156083 HC_gene_2105_tx_41 1 - 1154079 1156083 . 1 2005 0 -chrIV 1156630 1157896 MC_gene_1492_tx_1 1 + 1156630 1157896 . 1 1267 0 -chrIV 1156785 1159251 MC_gene_2106_tx_1 1 - 1156785 1159251 . 1 2467 0 -chrIV 1156803 1157183 MC_gene_2106_tx_2 1 - 1156803 1157183 . 1 381 0 -chrIV 1157565 1158087 MC_gene_1493_tx_1 1 + 1157565 1158087 . 1 523 0 -chrIV 1157696 1158768 MC_gene_1494_tx_1 1 + 1157696 1158768 . 1 1073 0 -chrIV 1157833 1158951 MC_gene_1495_tx_1 1 + 1157833 1158951 . 1 1119 0 -chrIV 1159267 1161821 MC_gene_2107_tx_1 1 - 1159267 1161821 . 1 2555 0 -chrIV 1159455 1161606 MC_gene_2107_tx_2 1 - 1159455 1161606 . 1 2152 0 -chrIV 1159458 1161513 MC_gene_2107_tx_3 1 - 1159458 1161513 . 1 2056 0 -chrIV 1159460 1162632 MC_gene_2108_tx_1 1 - 1159460 1162632 . 1 3173 0 -chrIV 1162085 1162921 HC_gene_1496_tx_1 1 + 1162085 1162921 . 1 837 0 -chrIV 1162328 1162921 HC_gene_1496_tx_2 24 + 1162328 1162921 . 1 594 0 -chrIV 1162482 1162921 HC_gene_1496_tx_3 2 + 1162482 1162921 . 1 440 0 -chrIV 1162656 1163417 HC_gene_2109_tx_1 1 - 1162656 1163417 . 1 762 0 -chrIV 1162656 1164693 HC_gene_2109_tx_2 2 - 1162656 1164693 . 1 2038 0 -chrIV 1162817 1163417 HC_gene_2109_tx_109 385 - 1162817 1163417 . 1 601 0 -chrIV 1162817 1163736 HC_gene_2109_tx_3 456 - 1162817 1163736 . 1 920 0 -chrIV 1162817 1163736 HC_gene_2109_tx_4 1 - 1162817 1163736 . 2 203,566 0,354 -chrIV 1162817 1163736 HC_gene_2109_tx_5 1 - 1162817 1163736 . 2 646,193 0,727 -chrIV 1162817 1163934 HC_gene_2109_tx_6 332 - 1162817 1163934 . 1 1118 0 -chrIV 1162817 1163934 HC_gene_2109_tx_7 1 - 1162817 1163934 . 2 371,695 0,423 -chrIV 1162817 1163934 HC_gene_2109_tx_8 1 - 1162817 1163934 . 2 879,90 0,1028 -chrIV 1162817 1163934 HC_gene_2109_tx_9 1 - 1162817 1163934 . 2 711,181 0,937 -chrIV 1162817 1163934 HC_gene_2109_tx_10 1 - 1162817 1163934 . 2 982,61 0,1057 -chrIV 1162817 1163934 HC_gene_2109_tx_11 1 - 1162817 1163934 . 2 484,172 0,946 -chrIV 1162817 1163934 HC_gene_2109_tx_12 1 - 1162817 1163934 . 2 655,403 0,715 -chrIV 1162817 1163934 HC_gene_2109_tx_13 1 - 1162817 1163934 . 2 445,442 0,676 -chrIV 1162817 1163934 HC_gene_2109_tx_14 1 - 1162817 1163934 . 2 810,238 0,880 -chrIV 1162817 1164123 HC_gene_2109_tx_15 1 - 1162817 1164123 . 2 957,243 0,1064 -chrIV 1162817 1164123 HC_gene_2109_tx_16 1 - 1162817 1164123 . 2 628,370 0,937 -chrIV 1162817 1164123 HC_gene_2109_tx_17 290 - 1162817 1164123 . 1 1307 0 -chrIV 1162817 1164123 HC_gene_2109_tx_18 1 - 1162817 1164123 . 2 850,361 0,946 -chrIV 1162817 1164123 HC_gene_2109_tx_19 1 - 1162817 1164123 . 2 572,687 0,620 -chrIV 1162817 1164123 HC_gene_2109_tx_20 1 - 1162817 1164123 . 2 799,367 0,940 -chrIV 1162817 1164123 HC_gene_2109_tx_21 1 - 1162817 1164123 . 2 447,424 0,883 -chrIV 1162817 1164123 HC_gene_2109_tx_22 1 - 1162817 1164123 . 2 879,329 0,978 -chrIV 1162817 1164444 HC_gene_2109_tx_23 239 - 1162817 1164444 . 1 1628 0 -chrIV 1162817 1164444 HC_gene_2109_tx_24 1 - 1162817 1164444 . 2 1081,418 0,1210 -chrIV 1162817 1164444 HC_gene_2109_tx_25 1 - 1162817 1164444 . 2 732,748 0,880 -chrIV 1162817 1164444 HC_gene_2109_tx_26 1 - 1162817 1164444 . 2 1072,364 0,1264 -chrIV 1162817 1164444 HC_gene_2109_tx_27 1 - 1162817 1164444 . 2 746,667 0,961 -chrIV 1162817 1164444 HC_gene_2109_tx_28 1 - 1162817 1164444 . 2 279,191 0,1437 -chrIV 1162817 1164444 HC_gene_2109_tx_29 1 - 1162817 1164444 . 2 498,691 0,937 -chrIV 1162817 1164444 HC_gene_2109_tx_30 1 - 1162817 1164444 . 2 1259,241 0,1387 -chrIV 1162817 1164444 HC_gene_2109_tx_31 1 - 1162817 1164444 . 2 1042,230 0,1398 -chrIV 1162817 1164444 HC_gene_2109_tx_32 1 - 1162817 1164444 . 2 306,809 0,819 -chrIV 1162817 1164444 HC_gene_2109_tx_33 1 - 1162817 1164444 . 2 310,1057 0,571 -chrIV 1162817 1164444 HC_gene_2109_tx_34 1 - 1162817 1164444 . 2 1047,199 0,1429 -chrIV 1162817 1164444 HC_gene_2109_tx_35 1 - 1162817 1164444 . 2 716,581 0,1047 -chrIV 1162817 1164444 HC_gene_2109_tx_36 1 - 1162817 1164444 . 2 294,1250 0,378 -chrIV 1162817 1164444 HC_gene_2109_tx_37 1 - 1162817 1164444 . 2 1010,402 0,1226 -chrIV 1162817 1164472 HC_gene_2109_tx_38 1 - 1162817 1164472 . 2 289,737 0,919 -chrIV 1162817 1164669 HC_gene_2109_tx_39 1 - 1162817 1164669 . 2 926,565 0,1288 -chrIV 1162817 1164676 HC_gene_2109_tx_40 1 - 1162817 1164676 . 2 957,761 0,1099 -chrIV 1162817 1164679 HC_gene_2109_tx_41 1 - 1162817 1164679 . 2 269,944 0,919 -chrIV 1162817 1164684 HC_gene_2109_tx_42 1 - 1162817 1164684 . 2 711,961 0,907 -chrIV 1162817 1164693 HC_gene_2109_tx_43 1473 - 1162817 1164693 . 1 1877 0 -chrIV 1162817 1164693 HC_gene_2109_tx_44 1 - 1162817 1164693 . 2 229,1483 0,394 -chrIV 1162817 1164693 HC_gene_2109_tx_45 1 - 1162817 1164693 . 2 999,283 0,1594 -chrIV 1162817 1164693 HC_gene_2109_tx_46 1 - 1162817 1164693 . 2 1240,562 0,1315 -chrIV 1162817 1164693 HC_gene_2109_tx_47 1 - 1162817 1164693 . 2 673,847 0,1030 -chrIV 1162817 1164693 HC_gene_2109_tx_48 1 - 1162817 1164693 . 2 621,1157 0,720 -chrIV 1162817 1164693 HC_gene_2109_tx_49 1 - 1162817 1164693 . 2 1379,301 0,1576 -chrIV 1162817 1164693 HC_gene_2109_tx_50 1 - 1162817 1164693 . 2 999,322 0,1555 -chrIV 1162817 1164693 HC_gene_2109_tx_51 1 - 1162817 1164693 . 2 1002,174 0,1703 -chrIV 1162817 1164693 HC_gene_2109_tx_52 1 - 1162817 1164693 . 2 693,820 0,1057 -chrIV 1162817 1164693 HC_gene_2109_tx_53 1 - 1162817 1164693 . 2 1551,127 0,1750 -chrIV 1162817 1164693 HC_gene_2109_tx_54 2 - 1162817 1164693 . 2 1605,214 0,1663 -chrIV 1162817 1164693 HC_gene_2109_tx_55 1 - 1162817 1164693 . 2 1500,174 0,1703 -chrIV 1162817 1164693 HC_gene_2109_tx_56 1 - 1162817 1164693 . 2 682,593 0,1284 -chrIV 1162817 1164693 HC_gene_2109_tx_57 1 - 1162817 1164693 . 2 405,1345 0,532 -chrIV 1162817 1164693 HC_gene_2109_tx_58 1 - 1162817 1164693 . 2 241,1328 0,549 -chrIV 1162817 1164693 HC_gene_2109_tx_59 2 - 1162817 1164693 . 2 879,931 0,946 -chrIV 1162817 1164693 HC_gene_2109_tx_60 1 - 1162817 1164693 . 2 405,1322 0,555 -chrIV 1162817 1164693 HC_gene_2109_tx_61 1 - 1162817 1164693 . 2 253,1544 0,333 -chrIV 1162817 1164693 HC_gene_2109_tx_62 1 - 1162817 1164693 . 2 1637,114 0,1763 -chrIV 1162817 1164693 HC_gene_2109_tx_63 1 - 1162817 1164693 . 2 818,997 0,880 -chrIV 1162817 1164693 HC_gene_2109_tx_64 1 - 1162817 1164693 . 2 821,1006 0,871 -chrIV 1162817 1164693 HC_gene_2109_tx_65 1 - 1162817 1164693 . 2 682,448 0,1429 -chrIV 1162817 1164693 HC_gene_2109_tx_66 1 - 1162817 1164693 . 3 359,900,468 0,432,1409 -chrIV 1162817 1164693 HC_gene_2109_tx_67 1 - 1162817 1164693 . 2 1307,160 0,1717 -chrIV 1162817 1164693 HC_gene_2109_tx_68 1 - 1162817 1164693 . 2 768,1046 0,831 -chrIV 1162817 1164693 HC_gene_2109_tx_69 1 - 1162817 1164693 . 2 1662,160 0,1717 -chrIV 1162817 1164693 HC_gene_2109_tx_70 1 - 1162817 1164693 . 2 1323,448 0,1429 -chrIV 1162817 1164693 HC_gene_2109_tx_71 1 - 1162817 1164693 . 2 836,247 0,1630 -chrIV 1162817 1164693 HC_gene_2109_tx_72 1 - 1162817 1164693 . 2 1073,541 0,1336 -chrIV 1162817 1164693 HC_gene_2109_tx_73 1 - 1162817 1164693 . 2 329,1503 0,374 -chrIV 1162817 1164693 HC_gene_2109_tx_74 1 - 1162817 1164693 . 2 716,1055 0,822 -chrIV 1162817 1164693 HC_gene_2109_tx_75 1 - 1162817 1164693 . 2 1387,174 0,1703 -chrIV 1162817 1164693 HC_gene_2109_tx_76 1 - 1162817 1164693 . 2 1010,613 0,1264 -chrIV 1162817 1164693 HC_gene_2109_tx_77 2 - 1162817 1164693 . 2 818,940 0,937 -chrIV 1162817 1164693 HC_gene_2109_tx_78 1 - 1162817 1164693 . 2 353,1297 0,580 -chrIV 1162817 1164693 HC_gene_2109_tx_79 1 - 1162817 1164693 . 2 503,1141 0,736 -chrIV 1162817 1164693 HC_gene_2109_tx_80 1 - 1162817 1164693 . 2 1480,247 0,1630 -chrIV 1162817 1164693 HC_gene_2109_tx_81 1 - 1162817 1164693 . 2 1081,746 0,1131 -chrIV 1162817 1164693 HC_gene_2109_tx_82 1 - 1162817 1164693 . 2 1240,541 0,1336 -chrIV 1162817 1164693 HC_gene_2109_tx_83 1 - 1162817 1164693 . 2 926,820 0,1057 -chrIV 1162817 1164693 HC_gene_2109_tx_84 1 - 1162817 1164693 . 2 879,940 0,937 -chrIV 1162817 1164693 HC_gene_2109_tx_85 1 - 1162817 1164693 . 2 1370,224 0,1653 -chrIV 1162817 1164693 HC_gene_2109_tx_86 1 - 1162817 1164693 . 2 1460,202 0,1675 -chrIV 1162817 1164693 HC_gene_2109_tx_87 1 - 1162817 1164693 . 2 646,1006 0,871 -chrIV 1162817 1164693 HC_gene_2109_tx_88 1 - 1162817 1164693 . 2 714,1066 0,811 -chrIV 1162817 1164693 HC_gene_2109_tx_89 1 - 1162817 1164693 . 3 503,552,355 0,880,1522 -chrIV 1162817 1164693 HC_gene_2109_tx_90 1 - 1162817 1164693 . 2 1222,479 0,1398 -chrIV 1162817 1164693 HC_gene_2109_tx_91 1 - 1162817 1164693 . 2 716,1023 0,854 -chrIV 1162817 1164693 HC_gene_2109_tx_92 1 - 1162817 1164693 . 2 1079,93 0,1784 -chrIV 1162817 1164693 HC_gene_2109_tx_93 1 - 1162817 1164693 . 2 273,986 0,891 -chrIV 1162817 1164693 HC_gene_2109_tx_94 1 - 1162817 1164693 . 3 673,144,867 0,784,1010 -chrIV 1162817 1164693 HC_gene_2109_tx_95 1 - 1162817 1164693 . 2 810,1023 0,854 -chrIV 1162817 1164693 HC_gene_2109_tx_96 1 - 1162817 1164693 . 2 806,400 0,1477 -chrIV 1162817 1164693 HC_gene_2109_tx_97 1 - 1162817 1164693 . 2 850,849 0,1028 -chrIV 1162817 1164693 HC_gene_2109_tx_98 1 - 1162817 1164693 . 2 1047,524 0,1353 -chrIV 1162817 1164693 HC_gene_2109_tx_99 1 - 1162817 1164693 . 2 371,1426 0,451 -chrIV 1162817 1164693 HC_gene_2109_tx_100 1 - 1162817 1164693 . 2 1504,174 0,1703 -chrIV 1162817 1164693 HC_gene_2109_tx_101 1 - 1162817 1164693 . 2 602,139 0,1738 -chrIV 1162817 1164693 HC_gene_2109_tx_102 1 - 1162817 1164693 . 2 1191,196 0,1681 -chrIV 1162817 1164693 HC_gene_2109_tx_103 1 - 1162817 1164693 . 2 1605,127 0,1750 -chrIV 1162817 1164693 HC_gene_2109_tx_104 1 - 1162817 1164693 . 2 716,1111 0,766 -chrIV 1162817 1164693 HC_gene_2109_tx_105 1 - 1162817 1164693 . 2 974,440 0,1437 -chrIV 1162817 1164693 HC_gene_2109_tx_106 1 - 1162817 1164693 . 2 390,247 0,1630 -chrIV 1162817 1164693 HC_gene_2109_tx_107 1 - 1162817 1164693 . 2 955,340 0,1537 -chrIV 1162817 1164693 HC_gene_2109_tx_108 1 - 1162817 1164693 . 2 850,931 0,946 -chrIV 1164663 1165009 HC_gene_2110_tx_1 1 - 1164663 1165009 . 1 347 0 -chrIV 1165430 1165635 MC_gene_1497_tx_1 1 + 1165430 1165635 . 1 206 0 -chrIV 1165560 1166077 MC_gene_1498_tx_1 1 + 1165560 1166077 . 1 518 0 -chrIV 1165849 1166298 MC_gene_2111_tx_1 1 - 1165849 1166298 . 1 450 0 -chrIV 1166699 1167030 HC_gene_1499_tx_1 33 + 1166699 1167030 . 1 332 0 -chrIV 1166779 1167030 HC_gene_1499_tx_2 1 + 1166779 1167030 . 1 252 0 -chrIV 1166921 1167199 HC_gene_2112_tx_1 34 - 1166921 1167199 . 1 279 0 -chrIV 1166921 1167451 HC_gene_2112_tx_2 88 - 1166921 1167451 . 1 531 0 -chrIV 1166921 1167786 HC_gene_2112_tx_3 45 - 1166921 1167786 . 1 866 0 -chrIV 1166921 1167852 HC_gene_2112_tx_4 15 - 1166921 1167852 . 1 932 0 -chrIV 1166921 1168126 HC_gene_2112_tx_5 39 - 1166921 1168126 . 1 1206 0 -chrIV 1166921 1168259 HC_gene_2112_tx_6 13 - 1166921 1168259 . 1 1339 0 -chrIV 1166921 1168356 HC_gene_2112_tx_7 30 - 1166921 1168356 . 1 1436 0 -chrIV 1166921 1168817 HC_gene_2112_tx_8 181 - 1166921 1168817 . 1 1897 0 -chrIV 1166921 1168817 HC_gene_2112_tx_9 1 - 1166921 1168817 . 2 239,1560 0,337 -chrIV 1166921 1168817 HC_gene_2112_tx_10 1 - 1166921 1168817 . 2 519,828 0,1069 -chrIV 1166921 1168817 HC_gene_2112_tx_11 1 - 1166921 1168817 . 2 454,1400 0,497 -chrIV 1166921 1168817 HC_gene_2112_tx_12 1 - 1166921 1168817 . 2 1097,348 0,1549 -chrIV 1166921 1168817 HC_gene_2112_tx_13 1 - 1166921 1168817 . 2 1224,520 0,1377 -chrIV 1166921 1168817 HC_gene_2112_tx_14 1 - 1166921 1168817 . 2 931,828 0,1069 -chrIV 1166921 1168817 HC_gene_2112_tx_15 1 - 1166921 1168817 . 2 931,406 0,1491 -chrIV 1166921 1168817 HC_gene_2112_tx_16 1 - 1166921 1168817 . 2 1016,237 0,1660 -chrIV 1166921 1168817 HC_gene_2112_tx_17 1 - 1166921 1168817 . 2 801,1027 0,870 -chrIV 1166921 1168817 HC_gene_2112_tx_18 1 - 1166921 1168817 . 2 825,955 0,942 -chrIV 1166921 1168817 HC_gene_2112_tx_19 1 - 1166921 1168817 . 2 801,930 0,967 -chrIV 1166921 1168817 HC_gene_2112_tx_20 1 - 1166921 1168817 . 2 1484,237 0,1660 -chrIV 1166921 1168817 HC_gene_2112_tx_21 1 - 1166921 1168817 . 2 825,912 0,985 -chrIV 1166921 1168817 HC_gene_2112_tx_22 1 - 1166921 1168817 . 2 921,630 0,1267 -chrIV 1166921 1168817 HC_gene_2112_tx_23 1 - 1166921 1168817 . 2 844,930 0,967 -chrIV 1167080 1168936 MC_gene_1500_tx_1 1 + 1167080 1168936 . 1 1857 0 -chrIV 1169113 1170261 HC_gene_1501_tx_1 50 + 1169113 1170261 . 1 1149 0 -chrIV 1169113 1170261 HC_gene_1501_tx_2 1 + 1169113 1170261 . 2 85,891 0,258 -chrIV 1169113 1170261 HC_gene_1501_tx_3 1 + 1169113 1170261 . 2 126,626 0,523 -chrIV 1170036 1170423 HC_gene_2113_tx_1 1 - 1170036 1170423 . 1 388 0 -chrIV 1170145 1170423 HC_gene_2113_tx_2 14 - 1170145 1170423 . 1 279 0 -chrIV 1170145 1171705 HC_gene_2113_tx_3 2 - 1170145 1171705 . 1 1561 0 -chrIV 1170145 1172019 HC_gene_2113_tx_4 1 - 1170145 1172019 . 2 1022,263 0,1612 -chrIV 1170145 1172019 HC_gene_2113_tx_5 6 - 1170145 1172019 . 1 1875 0 -chrIV 1172267 1173591 HC_gene_2114_tx_1 3 - 1172267 1173591 . 1 1325 0 -chrIV 1172267 1174273 HC_gene_2114_tx_2 31 - 1172267 1174273 . 1 2007 0 -chrIV 1172280 1172986 LC_gene_1502_tx_1 1 + 1172280 1172986 . 1 707 0 -chrIV 1174468 1174728 HC_gene_1503_tx_1 1 + 1174468 1174728 . 1 261 0 -chrIV 1174468 1174752 MC_gene_2115_tx_1 1 - 1174468 1174752 . 1 285 0 -chrIV 1174468 1174856 HC_gene_1503_tx_2 10 + 1174468 1174856 . 1 389 0 -chrIV 1174478 1174856 HC_gene_1503_tx_3 1 + 1174478 1174856 . 1 379 0 -chrIV 1174588 1175030 MC_gene_2116_tx_1 1 - 1174588 1175030 . 1 443 0 -chrIV 1175028 1175651 HC_gene_1504_tx_1 28 + 1175028 1175651 . 1 624 0 -chrIV 1175028 1175723 HC_gene_1504_tx_2 4 + 1175028 1175723 . 1 696 0 -chrIV 1175043 1175561 HC_gene_1504_tx_3 1 + 1175043 1175561 . 1 519 0 -chrIV 1175215 1175645 LC_gene_2117_tx_1 1 - 1175215 1175645 . 1 431 0 -chrIV 1175553 1175723 HC_gene_1504_tx_4 1 + 1175553 1175723 . 1 171 0 -chrIV 1175998 1178203 HC_gene_2118_tx_1 11 - 1175998 1178203 . 1 2206 0 -chrIV 1178444 1179556 HC_gene_1505_tx_1 1 + 1178444 1179556 . 1 1113 0 -chrIV 1178444 1179933 HC_gene_1505_tx_2 2 + 1178444 1179933 . 1 1490 0 -chrIV 1178444 1181410 HC_gene_1505_tx_3 5 + 1178444 1181410 . 1 2967 0 -chrIV 1178780 1179933 HC_gene_1505_tx_6 1 + 1178780 1179933 . 1 1154 0 -chrIV 1178780 1181410 HC_gene_1505_tx_4 2 + 1178780 1181410 . 1 2631 0 -chrIV 1179140 1181410 HC_gene_1505_tx_5 1 + 1179140 1181410 . 2 1161,1004 0,1267 -chrIV 1181632 1182691 HC_gene_1506_tx_1 1 + 1181632 1182691 . 1 1060 0 -chrIV 1181632 1182897 HC_gene_1506_tx_2 37 + 1181632 1182897 . 1 1266 0 -chrIV 1181632 1183331 HC_gene_1506_tx_3 3 + 1181632 1183331 . 1 1700 0 -chrIV 1181632 1184328 HC_gene_1506_tx_4 5 + 1181632 1184328 . 1 2697 0 -chrIV 1181963 1182897 HC_gene_1506_tx_5 2 + 1181963 1182897 . 1 935 0 -chrIV 1182377 1182691 HC_gene_1506_tx_6 1 + 1182377 1182691 . 1 315 0 -chrIV 1182377 1182897 HC_gene_1506_tx_7 6 + 1182377 1182897 . 1 521 0 -chrIV 1182377 1183331 HC_gene_1506_tx_8 2 + 1182377 1183331 . 1 955 0 -chrIV 1182575 1182981 HC_gene_2119_tx_1 2 - 1182575 1182981 . 1 407 0 -chrIV 1182575 1183490 HC_gene_2119_tx_2 1 - 1182575 1183490 . 1 916 0 -chrIV 1183250 1184328 HC_gene_1506_tx_9 310 + 1183250 1184328 . 1 1079 0 -chrIV 1183250 1184328 HC_gene_1506_tx_10 1 + 1183250 1184328 . 2 152,517 0,562 -chrIV 1183250 1184328 HC_gene_1506_tx_11 1 + 1183250 1184328 . 2 461,476 0,603 -chrIV 1183250 1184328 HC_gene_1506_tx_12 1 + 1183250 1184328 . 2 376,621 0,458 -chrIV 1183250 1184422 HC_gene_1506_tx_13 1 + 1183250 1184422 . 1 1173 0 -chrIV 1183250 1184513 HC_gene_1506_tx_14 66 + 1183250 1184513 . 1 1264 0 -chrIV 1183250 1184513 HC_gene_1506_tx_15 1 + 1183250 1184513 . 2 913,297 0,967 -chrIV 1183250 1184513 HC_gene_1506_tx_16 1 + 1183250 1184513 . 2 259,572 0,692 -chrIV 1183250 1184513 HC_gene_1506_tx_17 1 + 1183250 1184513 . 2 108,1072 0,192 -chrIV 1183250 1184513 HC_gene_1506_tx_18 1 + 1183250 1184513 . 2 117,572 0,692 -chrIV 1183413 1184328 HC_gene_1506_tx_19 43 + 1183413 1184328 . 1 916 0 -chrIV 1183413 1184422 HC_gene_1506_tx_20 1 + 1183413 1184422 . 1 1010 0 -chrIV 1183413 1184513 HC_gene_1506_tx_21 7 + 1183413 1184513 . 1 1101 0 -chrIV 1183536 1184328 HC_gene_1506_tx_22 51 + 1183536 1184328 . 1 793 0 -chrIV 1183536 1184422 HC_gene_1506_tx_23 1 + 1183536 1184422 . 1 887 0 -chrIV 1183536 1184513 HC_gene_1506_tx_24 10 + 1183536 1184513 . 1 978 0 -chrIV 1183687 1184328 HC_gene_1506_tx_25 39 + 1183687 1184328 . 1 642 0 -chrIV 1183687 1184422 HC_gene_1506_tx_26 1 + 1183687 1184422 . 1 736 0 -chrIV 1183687 1184513 HC_gene_1506_tx_27 11 + 1183687 1184513 . 1 827 0 -chrIV 1183785 1184328 HC_gene_1506_tx_28 58 + 1183785 1184328 . 1 544 0 -chrIV 1183785 1184513 HC_gene_1506_tx_29 6 + 1183785 1184513 . 1 729 0 -chrIV 1183975 1184328 HC_gene_1506_tx_30 149 + 1183975 1184328 . 1 354 0 -chrIV 1183975 1184422 HC_gene_1506_tx_31 1 + 1183975 1184422 . 1 448 0 -chrIV 1183975 1184513 HC_gene_1506_tx_32 42 + 1183975 1184513 . 1 539 0 -chrIV 1184620 1185960 HC_gene_1507_tx_1 53 + 1184620 1185960 . 1 1341 0 -chrIV 1184620 1185960 HC_gene_1507_tx_2 1 + 1184620 1185960 . 2 212,742 0,599 -chrIV 1184735 1185960 HC_gene_1507_tx_3 10 + 1184735 1185960 . 1 1226 0 -chrIV 1186078 1189228 HC_gene_1508_tx_1 7 + 1186078 1189228 . 1 3151 0 -chrIV 1186078 1189547 HC_gene_1508_tx_2 1 + 1186078 1189547 . 1 3470 0 -chrIV 1187055 1189228 HC_gene_1508_tx_3 3 + 1187055 1189228 . 1 2174 0 -chrIV 1187288 1189228 HC_gene_1508_tx_4 5 + 1187288 1189228 . 1 1941 0 -chrIV 1189127 1189721 HC_gene_2120_tx_1 187 - 1189127 1189721 . 1 595 0 -chrIV 1190011 1191929 HC_gene_1509_tx_1 17 + 1190011 1191929 . 1 1919 0 -chrIV 1190011 1191929 HC_gene_1509_tx_2 1 + 1190011 1191929 . 2 1290,532 0,1387 -chrIV 1190145 1191929 HC_gene_1509_tx_3 3 + 1190145 1191929 . 1 1785 0 -chrIV 1190272 1191929 HC_gene_1509_tx_4 2 + 1190272 1191929 . 1 1658 0 -chrIV 1190540 1191929 HC_gene_1509_tx_5 5 + 1190540 1191929 . 1 1390 0 -chrIV 1190674 1191929 HC_gene_1509_tx_6 1 + 1190674 1191929 . 1 1256 0 -chrIV 1191157 1191929 HC_gene_1509_tx_7 7 + 1191157 1191929 . 1 773 0 -chrIV 1191667 1191929 HC_gene_1509_tx_8 3 + 1191667 1191929 . 1 263 0 -chrIV 1191751 1192464 HC_gene_2121_tx_1 8 - 1191751 1192464 . 1 714 0 -chrIV 1191751 1194862 HC_gene_2121_tx_2 1 - 1191751 1194862 . 1 3112 0 -chrIV 1191751 1195200 HC_gene_2121_tx_3 4 - 1191751 1195200 . 1 3450 0 -chrIV 1191751 1195200 HC_gene_2121_tx_4 1 - 1191751 1195200 . 2 636,1751 0,1699 -chrIV 1191751 1195200 HC_gene_2121_tx_5 1 - 1191751 1195200 . 2 1652,1745 0,1705 -chrIV 1192731 1194097 MC_gene_1510_tx_1 1 + 1192731 1194097 . 1 1367 0 -chrIV 1195127 1196290 HC_gene_2122_tx_1 1 - 1195127 1196290 . 1 1164 0 -chrIV 1195129 1196290 HC_gene_2122_tx_2 1 - 1195129 1196290 . 1 1162 0 -chrIV 1195148 1196290 HC_gene_2122_tx_3 1 - 1195148 1196290 . 1 1143 0 -chrIV 1195150 1196290 HC_gene_2122_tx_4 1 - 1195150 1196290 . 1 1141 0 -chrIV 1195153 1196290 HC_gene_2122_tx_5 1 - 1195153 1196290 . 1 1138 0 -chrIV 1195155 1196290 HC_gene_2122_tx_6 7 - 1195155 1196290 . 1 1136 0 -chrIV 1195157 1196290 HC_gene_2122_tx_7 1 - 1195157 1196290 . 1 1134 0 -chrIV 1195158 1196290 HC_gene_2122_tx_8 2 - 1195158 1196290 . 1 1133 0 -chrIV 1195159 1196290 HC_gene_2122_tx_9 15 - 1195159 1196290 . 1 1132 0 -chrIV 1195159 1196290 HC_gene_2122_tx_10 1 - 1195159 1196290 . 2 250,504 0,628 -chrIV 1195160 1196290 HC_gene_2122_tx_11 2 - 1195160 1196290 . 1 1131 0 -chrIV 1195161 1196290 HC_gene_2122_tx_12 3 - 1195161 1196290 . 1 1130 0 -chrIV 1195162 1196290 HC_gene_2122_tx_13 5 - 1195162 1196290 . 1 1129 0 -chrIV 1195163 1196290 HC_gene_2122_tx_14 19 - 1195163 1196290 . 1 1128 0 -chrIV 1195164 1196290 HC_gene_2122_tx_15 13 - 1195164 1196290 . 1 1127 0 -chrIV 1195164 1196290 HC_gene_2122_tx_16 1 - 1195164 1196290 . 2 584,484 0,643 -chrIV 1195166 1196290 HC_gene_2122_tx_17 3 - 1195166 1196290 . 1 1125 0 -chrIV 1195167 1196290 HC_gene_2122_tx_18 3 - 1195167 1196290 . 1 1124 0 -chrIV 1195168 1196290 HC_gene_2122_tx_19 1 - 1195168 1196290 . 1 1123 0 -chrIV 1195169 1196290 HC_gene_2122_tx_20 9 - 1195169 1196290 . 1 1122 0 -chrIV 1195170 1196290 HC_gene_2122_tx_21 2 - 1195170 1196290 . 1 1121 0 -chrIV 1195170 1196290 HC_gene_2122_tx_22 1 - 1195170 1196290 . 2 708,279 0,842 -chrIV 1195173 1196290 HC_gene_2122_tx_23 1 - 1195173 1196290 . 1 1118 0 -chrIV 1195175 1196290 HC_gene_2122_tx_24 3 - 1195175 1196290 . 1 1116 0 -chrIV 1195176 1196290 HC_gene_2122_tx_25 5 - 1195176 1196290 . 1 1115 0 -chrIV 1195178 1196290 HC_gene_2122_tx_26 1 - 1195178 1196290 . 1 1113 0 -chrIV 1195181 1196288 HC_gene_2122_tx_27 1 - 1195181 1196288 . 1 1108 0 -chrIV 1195182 1196279 HC_gene_2122_tx_28 1 - 1195182 1196279 . 1 1098 0 -chrIV 1195182 1196285 HC_gene_2122_tx_29 3 - 1195182 1196285 . 1 1104 0 -chrIV 1195182 1196286 HC_gene_2122_tx_30 1 - 1195182 1196286 . 1 1105 0 -chrIV 1195184 1196286 HC_gene_2122_tx_31 1 - 1195184 1196286 . 1 1103 0 -chrIV 1195185 1196283 HC_gene_2122_tx_32 1 - 1195185 1196283 . 1 1099 0 -chrIV 1195190 1196282 HC_gene_2122_tx_33 1 - 1195190 1196282 . 1 1093 0 -chrIV 1195191 1196285 HC_gene_2122_tx_34 1 - 1195191 1196285 . 1 1095 0 -chrIV 1195202 1196290 HC_gene_2122_tx_35 2 - 1195202 1196290 . 1 1089 0 -chrIV 1195203 1196290 HC_gene_2122_tx_36 1 - 1195203 1196290 . 1 1088 0 -chrIV 1195204 1196290 HC_gene_2122_tx_37 4 - 1195204 1196290 . 1 1087 0 -chrIV 1195205 1196290 HC_gene_2122_tx_38 3 - 1195205 1196290 . 1 1086 0 -chrIV 1195206 1196290 HC_gene_2122_tx_39 1 - 1195206 1196290 . 2 314,722 0,363 -chrIV 1195207 1196290 HC_gene_2122_tx_40 1 - 1195207 1196290 . 1 1084 0 -chrIV 1195208 1196290 HC_gene_2122_tx_41 1 - 1195208 1196290 . 1 1083 0 -chrIV 1195217 1196290 HC_gene_2122_tx_42 1 - 1195217 1196290 . 1 1074 0 -chrIV 1195224 1196290 HC_gene_2122_tx_43 1 - 1195224 1196290 . 1 1067 0 -chrIV 1195226 1196290 HC_gene_2122_tx_44 1 - 1195226 1196290 . 1 1065 0 -chrIV 1195232 1196290 HC_gene_2122_tx_45 1 - 1195232 1196290 . 1 1059 0 -chrIV 1195239 1196290 HC_gene_2122_tx_46 1 - 1195239 1196290 . 1 1052 0 -chrIV 1195240 1196290 HC_gene_2122_tx_47 1 - 1195240 1196290 . 1 1051 0 -chrIV 1195244 1196290 HC_gene_2122_tx_48 1 - 1195244 1196290 . 1 1047 0 -chrIV 1195246 1196290 HC_gene_2122_tx_49 1 - 1195246 1196290 . 1 1045 0 -chrIV 1195248 1196290 HC_gene_2122_tx_50 1 - 1195248 1196290 . 1 1043 0 -chrIV 1195252 1196290 HC_gene_2122_tx_51 1 - 1195252 1196290 . 2 119,875 0,164 -chrIV 1195257 1196290 HC_gene_2122_tx_52 2 - 1195257 1196290 . 1 1034 0 -chrIV 1195259 1196290 HC_gene_2122_tx_53 2 - 1195259 1196290 . 1 1032 0 -chrIV 1195262 1196290 HC_gene_2122_tx_54 2 - 1195262 1196290 . 1 1029 0 -chrIV 1195263 1196290 HC_gene_2122_tx_55 3 - 1195263 1196290 . 1 1028 0 -chrIV 1195266 1196290 HC_gene_2122_tx_56 1 - 1195266 1196290 . 1 1025 0 -chrIV 1195272 1196290 HC_gene_2122_tx_57 1 - 1195272 1196290 . 1 1019 0 -chrIV 1195295 1196290 HC_gene_2122_tx_58 2 - 1195295 1196290 . 1 996 0 -chrIV 1195296 1196290 HC_gene_2122_tx_59 1 - 1195296 1196290 . 1 995 0 -chrIV 1195300 1196290 HC_gene_2122_tx_60 1 - 1195300 1196290 . 1 991 0 -chrIV 1195303 1196290 HC_gene_2122_tx_61 1 - 1195303 1196290 . 1 988 0 -chrIV 1195305 1196290 HC_gene_2122_tx_62 5 - 1195305 1196290 . 1 986 0 -chrIV 1195307 1196290 HC_gene_2122_tx_63 1 - 1195307 1196290 . 1 984 0 -chrIV 1195310 1196290 HC_gene_2122_tx_64 2 - 1195310 1196290 . 1 981 0 -chrIV 1195316 1196290 HC_gene_2122_tx_65 1 - 1195316 1196290 . 1 975 0 -chrIV 1195319 1196290 HC_gene_2122_tx_66 1 - 1195319 1196290 . 1 972 0 -chrIV 1195322 1196290 HC_gene_2122_tx_67 2 - 1195322 1196290 . 1 969 0 -chrIV 1195326 1196290 HC_gene_2122_tx_68 1 - 1195326 1196290 . 1 965 0 -chrIV 1195337 1196290 HC_gene_2122_tx_69 1 - 1195337 1196290 . 1 954 0 -chrIV 1195339 1196290 HC_gene_2122_tx_70 1 - 1195339 1196290 . 1 952 0 -chrIV 1195340 1196290 HC_gene_2122_tx_71 1 - 1195340 1196290 . 1 951 0 -chrIV 1195348 1196290 HC_gene_2122_tx_72 1 - 1195348 1196290 . 1 943 0 -chrIV 1195350 1196290 HC_gene_2122_tx_73 4 - 1195350 1196290 . 1 941 0 -chrIV 1195355 1196290 HC_gene_2122_tx_74 1 - 1195355 1196290 . 1 936 0 -chrIV 1195362 1196290 HC_gene_2122_tx_75 1 - 1195362 1196290 . 1 929 0 -chrIV 1195430 1196546 LC_gene_1511_tx_1 1 + 1195430 1196546 . 1 1117 0 -chrIV 1196434 1198621 HC_gene_2123_tx_1 1 - 1196434 1198621 . 1 2188 0 -chrIV 1196434 1198808 HC_gene_2123_tx_2 1 - 1196434 1198808 . 1 2375 0 -chrIV 1196533 1197827 MC_gene_1512_tx_1 1 + 1196533 1197827 . 1 1295 0 -chrIV 1196822 1198808 HC_gene_2123_tx_3 1 - 1196822 1198808 . 1 1987 0 -chrIV 1197737 1198621 HC_gene_2123_tx_4 1 - 1197737 1198621 . 1 885 0 -chrIV 1197737 1198808 HC_gene_2123_tx_5 2 - 1197737 1198808 . 1 1072 0 -chrIV 1199007 1200711 HC_gene_1513_tx_1 2 + 1199007 1200711 . 1 1705 0 -chrIV 1199007 1201378 HC_gene_1513_tx_2 1 + 1199007 1201378 . 1 2372 0 -chrIV 1201925 1202652 HC_gene_1514_tx_1 1 + 1201925 1202652 . 1 728 0 -chrIV 1201925 1202656 HC_gene_1514_tx_2 1 + 1201925 1202656 . 1 732 0 -chrIV 1201969 1206448 HC_gene_2124_tx_1 1 - 1201969 1206448 . 1 4480 0 -chrIV 1202105 1202449 HC_gene_1515_tx_1 8 + 1202105 1202449 . 1 345 0 -chrIV 1202105 1202450 HC_gene_1515_tx_2 4 + 1202105 1202450 . 1 346 0 -chrIV 1202105 1202451 HC_gene_1515_tx_3 3 + 1202105 1202451 . 1 347 0 -chrIV 1202105 1202452 HC_gene_1515_tx_4 2 + 1202105 1202452 . 1 348 0 -chrIV 1202105 1202453 HC_gene_1515_tx_5 1 + 1202105 1202453 . 1 349 0 -chrIV 1202105 1202454 HC_gene_1515_tx_6 9 + 1202105 1202454 . 1 350 0 -chrIV 1202105 1202455 HC_gene_1515_tx_7 2 + 1202105 1202455 . 1 351 0 -chrIV 1202105 1202456 HC_gene_1515_tx_8 2 + 1202105 1202456 . 1 352 0 -chrIV 1202105 1202457 HC_gene_1515_tx_9 2 + 1202105 1202457 . 1 353 0 -chrIV 1202105 1202458 HC_gene_1515_tx_10 3 + 1202105 1202458 . 1 354 0 -chrIV 1202105 1202459 HC_gene_1515_tx_11 4 + 1202105 1202459 . 1 355 0 -chrIV 1202105 1202461 HC_gene_1515_tx_12 5 + 1202105 1202461 . 1 357 0 -chrIV 1202105 1202462 HC_gene_1515_tx_13 5 + 1202105 1202462 . 1 358 0 -chrIV 1202105 1202464 HC_gene_1515_tx_14 4 + 1202105 1202464 . 1 360 0 -chrIV 1202105 1202467 HC_gene_1515_tx_15 1 + 1202105 1202467 . 1 363 0 -chrIV 1202105 1202468 HC_gene_1515_tx_16 2 + 1202105 1202468 . 1 364 0 -chrIV 1202105 1202470 HC_gene_1515_tx_17 6 + 1202105 1202470 . 1 366 0 -chrIV 1202105 1202471 HC_gene_1515_tx_18 5 + 1202105 1202471 . 1 367 0 -chrIV 1202105 1202473 HC_gene_1515_tx_19 25 + 1202105 1202473 . 1 369 0 -chrIV 1202105 1202474 HC_gene_1515_tx_20 3 + 1202105 1202474 . 1 370 0 -chrIV 1202105 1202475 HC_gene_1515_tx_21 6 + 1202105 1202475 . 1 371 0 -chrIV 1202105 1202478 HC_gene_1515_tx_22 3 + 1202105 1202478 . 1 374 0 -chrIV 1202105 1202481 HC_gene_1515_tx_23 4 + 1202105 1202481 . 1 377 0 -chrIV 1202105 1202483 HC_gene_1515_tx_24 1 + 1202105 1202483 . 1 379 0 -chrIV 1202105 1202500 HC_gene_1515_tx_25 1 + 1202105 1202500 . 1 396 0 -chrIV 1202105 1202501 HC_gene_1515_tx_26 2 + 1202105 1202501 . 1 397 0 -chrIV 1202105 1202506 HC_gene_1515_tx_27 1 + 1202105 1202506 . 1 402 0 -chrIV 1202105 1202507 HC_gene_1515_tx_28 3 + 1202105 1202507 . 1 403 0 -chrIV 1202105 1202509 HC_gene_1515_tx_29 4 + 1202105 1202509 . 1 405 0 -chrIV 1202105 1202510 HC_gene_1515_tx_30 3 + 1202105 1202510 . 1 406 0 -chrIV 1202105 1202512 HC_gene_1515_tx_31 1 + 1202105 1202512 . 1 408 0 -chrIV 1202105 1202513 HC_gene_1515_tx_32 10 + 1202105 1202513 . 1 409 0 -chrIV 1202105 1202514 HC_gene_1515_tx_33 11 + 1202105 1202514 . 1 410 0 -chrIV 1202105 1202517 HC_gene_1515_tx_34 8 + 1202105 1202517 . 1 413 0 -chrIV 1202105 1202520 HC_gene_1515_tx_35 1 + 1202105 1202520 . 1 416 0 -chrIV 1202105 1202521 HC_gene_1515_tx_36 3 + 1202105 1202521 . 1 417 0 -chrIV 1202105 1202523 HC_gene_1515_tx_37 1 + 1202105 1202523 . 1 419 0 -chrIV 1202105 1202526 HC_gene_1515_tx_38 6 + 1202105 1202526 . 1 422 0 -chrIV 1202105 1202531 HC_gene_1515_tx_39 1 + 1202105 1202531 . 1 427 0 -chrIV 1202105 1202533 HC_gene_1515_tx_40 3 + 1202105 1202533 . 1 429 0 -chrIV 1202105 1202534 HC_gene_1515_tx_41 1 + 1202105 1202534 . 1 430 0 -chrIV 1202105 1202535 HC_gene_1515_tx_42 3 + 1202105 1202535 . 1 431 0 -chrIV 1202105 1202537 HC_gene_1515_tx_43 1 + 1202105 1202537 . 1 433 0 -chrIV 1202105 1202538 HC_gene_1515_tx_44 5 + 1202105 1202538 . 1 434 0 -chrIV 1202105 1202540 HC_gene_1515_tx_45 3 + 1202105 1202540 . 1 436 0 -chrIV 1202105 1202543 HC_gene_1515_tx_46 4 + 1202105 1202543 . 1 439 0 -chrIV 1202105 1202544 HC_gene_1515_tx_47 2 + 1202105 1202544 . 1 440 0 -chrIV 1202105 1202546 HC_gene_1515_tx_48 8 + 1202105 1202546 . 1 442 0 -chrIV 1202105 1202547 HC_gene_1515_tx_49 5 + 1202105 1202547 . 1 443 0 -chrIV 1202105 1202548 HC_gene_1515_tx_50 3 + 1202105 1202548 . 1 444 0 -chrIV 1202105 1202549 HC_gene_1515_tx_51 1 + 1202105 1202549 . 1 445 0 -chrIV 1202105 1202553 HC_gene_1515_tx_52 1 + 1202105 1202553 . 1 449 0 -chrIV 1202105 1202554 HC_gene_1515_tx_53 2 + 1202105 1202554 . 1 450 0 -chrIV 1202105 1202556 HC_gene_1515_tx_54 2 + 1202105 1202556 . 1 452 0 -chrIV 1202105 1202557 HC_gene_1515_tx_55 3 + 1202105 1202557 . 1 453 0 -chrIV 1202105 1202558 HC_gene_1515_tx_56 5 + 1202105 1202558 . 1 454 0 -chrIV 1202105 1202559 HC_gene_1515_tx_57 1 + 1202105 1202559 . 1 455 0 -chrIV 1202105 1202561 HC_gene_1515_tx_58 4 + 1202105 1202561 . 1 457 0 -chrIV 1202105 1202563 HC_gene_1515_tx_59 7 + 1202105 1202563 . 1 459 0 -chrIV 1202105 1202564 HC_gene_1515_tx_60 11 + 1202105 1202564 . 1 460 0 -chrIV 1202105 1202565 HC_gene_1515_tx_61 6 + 1202105 1202565 . 1 461 0 -chrIV 1202105 1202566 HC_gene_1515_tx_62 2 + 1202105 1202566 . 1 462 0 -chrIV 1202105 1202567 HC_gene_1515_tx_63 15 + 1202105 1202567 . 1 463 0 -chrIV 1202105 1202568 HC_gene_1515_tx_64 5 + 1202105 1202568 . 1 464 0 -chrIV 1202105 1202569 HC_gene_1515_tx_65 4 + 1202105 1202569 . 1 465 0 -chrIV 1202105 1202570 HC_gene_1515_tx_66 3 + 1202105 1202570 . 1 466 0 -chrIV 1202105 1202571 HC_gene_1515_tx_67 1 + 1202105 1202571 . 1 467 0 -chrIV 1202105 1202572 HC_gene_1515_tx_68 3 + 1202105 1202572 . 1 468 0 -chrIV 1202105 1202573 HC_gene_1515_tx_69 5 + 1202105 1202573 . 1 469 0 -chrIV 1202105 1202574 HC_gene_1515_tx_70 8 + 1202105 1202574 . 1 470 0 -chrIV 1202105 1202577 HC_gene_1515_tx_71 2 + 1202105 1202577 . 1 473 0 -chrIV 1202105 1202578 HC_gene_1515_tx_72 2 + 1202105 1202578 . 1 474 0 -chrIV 1202105 1202579 HC_gene_1515_tx_73 2 + 1202105 1202579 . 1 475 0 -chrIV 1202105 1202580 HC_gene_1515_tx_74 6 + 1202105 1202580 . 1 476 0 -chrIV 1202105 1202582 HC_gene_1515_tx_75 1 + 1202105 1202582 . 1 478 0 -chrIV 1202105 1202583 HC_gene_1515_tx_76 3 + 1202105 1202583 . 1 479 0 -chrIV 1202105 1202584 HC_gene_1515_tx_77 3 + 1202105 1202584 . 1 480 0 -chrIV 1202105 1202585 HC_gene_1515_tx_78 2 + 1202105 1202585 . 1 481 0 -chrIV 1202105 1202586 HC_gene_1515_tx_79 1 + 1202105 1202586 . 1 482 0 -chrIV 1202105 1202587 HC_gene_1515_tx_80 5 + 1202105 1202587 . 1 483 0 -chrIV 1202105 1202588 HC_gene_1515_tx_81 11 + 1202105 1202588 . 1 484 0 -chrIV 1202105 1202652 HC_gene_1515_tx_82 15 + 1202105 1202652 . 1 548 0 -chrIV 1202105 1202654 HC_gene_1515_tx_83 9 + 1202105 1202654 . 1 550 0 -chrIV 1202105 1202655 HC_gene_1515_tx_84 1 + 1202105 1202655 . 1 551 0 -chrIV 1202105 1202656 HC_gene_1515_tx_85 6 + 1202105 1202656 . 1 552 0 -chrIV 1202105 1202657 HC_gene_1515_tx_86 29 + 1202105 1202657 . 1 553 0 -chrIV 1202105 1202658 HC_gene_1515_tx_87 3 + 1202105 1202658 . 1 554 0 -chrIV 1202105 1202659 HC_gene_1515_tx_88 2 + 1202105 1202659 . 1 555 0 -chrIV 1202105 1202660 HC_gene_1515_tx_89 10 + 1202105 1202660 . 1 556 0 -chrIV 1202105 1202661 HC_gene_1515_tx_90 2 + 1202105 1202661 . 1 557 0 -chrIV 1202105 1202662 HC_gene_1515_tx_91 3 + 1202105 1202662 . 1 558 0 -chrIV 1202105 1202665 HC_gene_1515_tx_92 2 + 1202105 1202665 . 1 561 0 -chrIV 1202105 1202669 HC_gene_1515_tx_93 1 + 1202105 1202669 . 1 565 0 -chrIV 1202105 1202670 HC_gene_1515_tx_94 1 + 1202105 1202670 . 1 566 0 -chrIV 1202105 1202671 HC_gene_1515_tx_95 1 + 1202105 1202671 . 1 567 0 -chrIV 1202105 1202673 HC_gene_1515_tx_96 1 + 1202105 1202673 . 1 569 0 -chrIV 1202105 1202675 HC_gene_1515_tx_97 1 + 1202105 1202675 . 1 571 0 -chrIV 1202105 1202742 HC_gene_1515_tx_98 4 + 1202105 1202742 . 1 638 0 -chrIV 1202105 1202839 HC_gene_1515_tx_99 33 + 1202105 1202839 . 1 735 0 -chrIV 1202127 1204234 HC_gene_2124_tx_2 2 - 1202127 1204234 . 1 2108 0 -chrIV 1202198 1204234 HC_gene_2124_tx_3 1 - 1202198 1204234 . 2 787,1168 0,869 -chrIV 1202367 1204234 HC_gene_2124_tx_4 1 - 1202367 1204234 . 1 1868 0 -chrIV 1202434 1204234 HC_gene_2124_tx_5 26 - 1202434 1204234 . 1 1801 0 -chrIV 1202434 1204234 HC_gene_2124_tx_6 1 - 1202434 1204234 . 2 1423,277 0,1524 -chrIV 1202434 1205009 HC_gene_2124_tx_7 1 - 1202434 1205009 . 1 2576 0 -chrIV 1203056 1204517 MC_gene_1516_tx_1 1 + 1203056 1204517 . 1 1462 0 -chrIV 1204370 1204949 HC_gene_2124_tx_8 86 - 1204370 1204949 . 1 580 0 -chrIV 1204370 1205009 HC_gene_2124_tx_9 33 - 1204370 1205009 . 1 640 0 -chrIV 1204370 1205127 HC_gene_2124_tx_10 21 - 1204370 1205127 . 1 758 0 -chrIV 1204370 1205246 HC_gene_2124_tx_11 45 - 1204370 1205246 . 1 877 0 -chrIV 1204370 1205246 HC_gene_2124_tx_12 1 - 1204370 1205246 . 2 617,157 0,720 -chrIV 1204370 1205336 HC_gene_2124_tx_13 14 - 1204370 1205336 . 1 967 0 -chrIV 1204370 1205671 HC_gene_2124_tx_14 13 - 1204370 1205671 . 1 1302 0 -chrIV 1204370 1205858 HC_gene_2124_tx_15 13 - 1204370 1205858 . 1 1489 0 -chrIV 1204370 1205858 HC_gene_2124_tx_16 1 - 1204370 1205858 . 2 550,370 0,1119 -chrIV 1204370 1205858 HC_gene_2124_tx_17 1 - 1204370 1205858 . 2 850,580 0,909 -chrIV 1204370 1205871 HC_gene_2124_tx_18 1 - 1204370 1205871 . 2 593,637 0,865 -chrIV 1204370 1206182 HC_gene_2124_tx_19 15 - 1204370 1206182 . 1 1813 0 -chrIV 1204370 1206377 HC_gene_2124_tx_20 1 - 1204370 1206377 . 2 874,538 0,1470 -chrIV 1204370 1206448 HC_gene_2124_tx_21 65 - 1204370 1206448 . 1 2079 0 -chrIV 1204370 1206448 HC_gene_2124_tx_22 1 - 1204370 1206448 . 2 938,1086 0,993 -chrIV 1204370 1206448 HC_gene_2124_tx_23 1 - 1204370 1206448 . 2 1202,807 0,1272 -chrIV 1204370 1206448 HC_gene_2124_tx_24 1 - 1204370 1206448 . 2 912,996 0,1083 -chrIV 1204370 1206448 HC_gene_2124_tx_25 1 - 1204370 1206448 . 2 1773,234 0,1845 -chrIV 1204370 1206448 HC_gene_2124_tx_26 1 - 1204370 1206448 . 2 826,1190 0,889 -chrIV 1204370 1206448 HC_gene_2124_tx_27 1 - 1204370 1206448 . 2 1231,807 0,1272 -chrIV 1204370 1206750 HC_gene_2124_tx_28 9 - 1204370 1206750 . 1 2381 0 -chrIV 1204370 1206750 HC_gene_2124_tx_29 1 - 1204370 1206750 . 2 1614,643 0,1738 -chrIV 1206655 1207051 MC_gene_1517_tx_1 1 + 1206655 1207051 . 1 397 0 -chrIV 1209315 1212623 HC_gene_1518_tx_1 1 + 1209315 1212623 . 2 2276,963 0,2346 -chrIV 1209315 1212623 HC_gene_1518_tx_2 1 + 1209315 1212623 . 2 2306,930 0,2379 -chrIV 1209315 1212623 HC_gene_1518_tx_3 2 + 1209315 1212623 . 1 3309 0 -chrIV 1209315 1212623 HC_gene_1518_tx_4 1 + 1209315 1212623 . 2 2317,930 0,2379 -chrIV 1209315 1212623 HC_gene_1518_tx_5 1 + 1209315 1212623 . 2 735,2472 0,837 -chrIV 1209315 1212623 HC_gene_1518_tx_6 1 + 1209315 1212623 . 2 1940,1254 0,2055 -chrIV 1212421 1212900 MC_gene_2125_tx_1 1 - 1212421 1212900 . 1 480 0 -chrIV 1212791 1213696 HC_gene_1519_tx_1 55 + 1212791 1213696 . 2 87,718 0,188 -chrIV 1212791 1213696 HC_gene_1519_tx_2 3 + 1212791 1213696 . 2 105,691 0,215 -chrIV 1212791 1213696 HC_gene_1519_tx_3 8 + 1212791 1213696 . 1 906 0 -chrIV 1212791 1213789 HC_gene_1519_tx_4 1 + 1212791 1213789 . 2 87,811 0,188 -chrIV 1213054 1213696 HC_gene_1519_tx_5 16 + 1213054 1213696 . 1 643 0 -chrIV 1213161 1213696 HC_gene_1519_tx_6 15 + 1213161 1213696 . 1 536 0 -chrIV 1213161 1213789 HC_gene_1519_tx_7 1 + 1213161 1213789 . 1 629 0 -chrIV 1213852 1214997 HC_gene_1520_tx_1 119 + 1213852 1214997 . 1 1146 0 -chrIV 1213852 1214997 HC_gene_1520_tx_2 1 + 1213852 1214997 . 2 25,840 0,306 -chrIV 1213852 1214997 HC_gene_1520_tx_3 1 + 1213852 1214997 . 2 610,487 0,659 -chrIV 1214092 1214997 HC_gene_1520_tx_4 8 + 1214092 1214997 . 1 906 0 -chrIV 1214357 1214997 HC_gene_1520_tx_5 14 + 1214357 1214997 . 1 641 0 -chrIV 1214909 1215451 HC_gene_2126_tx_1 6 - 1214909 1215451 . 1 543 0 -chrIV 1214909 1217604 HC_gene_2126_tx_2 2 - 1214909 1217604 . 1 2696 0 -chrIV 1217656 1219125 HC_gene_2127_tx_1 34 - 1217656 1219125 . 1 1470 0 -chrIV 1219356 1219551 HC_gene_1521_tx_1 1 + 1219356 1219551 . 1 196 0 -chrIV 1220968 1221529 HC_gene_2128_tx_1 19 - 1220968 1221529 . 1 562 0 -chrIV 1220968 1221607 HC_gene_2128_tx_2 25 - 1220968 1221607 . 1 640 0 -chrIV 1220968 1221920 HC_gene_2128_tx_3 10 - 1220968 1221920 . 1 953 0 -chrIV 1220968 1222115 HC_gene_2128_tx_4 5 - 1220968 1222115 . 1 1148 0 -chrIV 1220968 1222412 HC_gene_2128_tx_5 111 - 1220968 1222412 . 1 1445 0 -chrIV 1222713 1223445 HC_gene_1522_tx_1 198 + 1222713 1223445 . 1 733 0 -chrIV 1222890 1223445 HC_gene_1522_tx_2 35 + 1222890 1223445 . 1 556 0 -chrIV 1223393 1223739 HC_gene_2129_tx_1 7 - 1223393 1223739 . 1 347 0 -chrIV 1224756 1225192 HC_gene_1523_tx_1 91 + 1224756 1225192 . 1 437 0 -chrIV 1224756 1225310 HC_gene_1523_tx_2 13 + 1224756 1225310 . 1 555 0 -chrIV 1225106 1225692 HC_gene_2130_tx_1 9 - 1225106 1225692 . 1 587 0 -chrIV 1225106 1226553 HC_gene_2130_tx_2 11 - 1225106 1226553 . 1 1448 0 -chrIV 1225257 1225692 HC_gene_2130_tx_4 2 - 1225257 1225692 . 1 436 0 -chrIV 1225257 1226553 HC_gene_2130_tx_3 2 - 1225257 1226553 . 1 1297 0 -chrIV 1226609 1228295 LC_gene_2131_tx_1 1 - 1226609 1228295 . 1 1687 0 -chrIV 1226673 1228372 HC_gene_1524_tx_1 1 + 1226673 1228372 . 1 1700 0 -chrIV 1226758 1228372 HC_gene_1524_tx_2 20 + 1226758 1228372 . 1 1615 0 -chrIV 1226758 1228372 HC_gene_1524_tx_3 1 + 1226758 1228372 . 2 1001,559 0,1056 -chrIV 1226758 1228372 HC_gene_1524_tx_4 1 + 1226758 1228372 . 2 891,669 0,946 -chrIV 1228540 1229209 HC_gene_1525_tx_1 314 + 1228540 1229209 . 1 670 0 -chrIV 1228540 1229321 HC_gene_1525_tx_2 267 + 1228540 1229321 . 1 782 0 -chrIV 1229139 1229628 HC_gene_2132_tx_1 346 - 1229139 1229628 . 1 490 0 -chrIV 1229293 1229628 HC_gene_2132_tx_2 39 - 1229293 1229628 . 1 336 0 -chrIV 1230127 1233310 HC_gene_1526_tx_1 4 + 1230127 1233310 . 1 3184 0 -chrIV 1230945 1233310 HC_gene_1526_tx_2 3 + 1230945 1233310 . 1 2366 0 -chrIV 1231587 1233310 HC_gene_1526_tx_3 2 + 1231587 1233310 . 1 1724 0 -chrIV 1233142 1233540 HC_gene_2133_tx_1 138 - 1233142 1233540 . 1 399 0 -chrIV 1233142 1233754 HC_gene_2133_tx_2 8 - 1233142 1233754 . 1 613 0 -chrIV 1234040 1236200 HC_gene_2134_tx_1 3 - 1234040 1236200 . 1 2161 0 -chrIV 1234109 1236270 HC_gene_1527_tx_1 162 + 1234109 1236270 . 1 2162 0 -chrIV 1235462 1236200 HC_gene_2134_tx_2 1 - 1235462 1236200 . 2 182,480 0,259 -chrIV 1235462 1236200 HC_gene_2134_tx_3 1 - 1235462 1236200 . 1 739 0 -chrIV 1236474 1238197 HC_gene_1528_tx_1 207 + 1236474 1238197 . 2 369,589 0,1135 -chrIV 1236474 1238197 HC_gene_1528_tx_2 16 + 1236474 1238197 . 2 363,589 0,1135 -chrIV 1236474 1238197 HC_gene_1528_tx_3 50 + 1236474 1238197 . 1 1724 0 -chrIV 1236474 1238197 HC_gene_1528_tx_4 1 + 1236474 1238197 . 2 859,814 0,910 -chrIV 1236474 1238197 HC_gene_1528_tx_5 1 + 1236474 1238197 . 2 969,623 0,1101 -chrIV 1236474 1238197 HC_gene_1528_tx_6 1 + 1236474 1238197 . 2 381,623 0,1101 -chrIV 1236474 1238197 HC_gene_1528_tx_7 3 + 1236474 1238197 . 2 381,567 0,1157 -chrIV 1236474 1238197 HC_gene_1528_tx_8 1 + 1236474 1238197 . 2 859,806 0,918 -chrIV 1236474 1238197 HC_gene_1528_tx_9 1 + 1236474 1238197 . 2 901,696 0,1028 -chrIV 1236474 1238197 HC_gene_1528_tx_10 1 + 1236474 1238197 . 2 791,811 0,913 -chrIV 1236474 1238197 HC_gene_1528_tx_11 1 + 1236474 1238197 . 2 901,750 0,974 -chrIV 1236474 1238197 HC_gene_1528_tx_12 1 + 1236474 1238197 . 2 957,689 0,1035 -chrIV 1236474 1238197 HC_gene_1528_tx_13 1 + 1236474 1238197 . 2 1029,623 0,1101 -chrIV 1236474 1238197 HC_gene_1528_tx_14 1 + 1236474 1238197 . 2 835,789 0,935 -chrIV 1236474 1238197 HC_gene_1528_tx_15 1 + 1236474 1238197 . 2 829,822 0,902 -chrIV 1236474 1238197 HC_gene_1528_tx_16 1 + 1236474 1238197 . 2 369,578 0,1146 -chrIV 1236474 1238197 HC_gene_1528_tx_17 1 + 1236474 1238197 . 2 930,689 0,1035 -chrIV 1236474 1238197 HC_gene_1528_tx_18 1 + 1236474 1238197 . 2 954,589 0,1135 -chrIV 1236474 1238197 HC_gene_1528_tx_19 1 + 1236474 1238197 . 2 957,701 0,1023 -chrIV 1236474 1238351 HC_gene_1528_tx_20 16 + 1236474 1238351 . 2 369,743 0,1135 -chrIV 1236474 1238351 HC_gene_1528_tx_21 13 + 1236474 1238351 . 1 1878 0 -chrIV 1236474 1238351 HC_gene_1528_tx_22 1 + 1236474 1238351 . 2 957,843 0,1035 -chrIV 1236474 1238351 HC_gene_1528_tx_23 1 + 1236474 1238351 . 2 987,777 0,1101 -chrIV 1236628 1238197 HC_gene_1528_tx_24 5 + 1236628 1238197 . 2 209,589 0,981 -chrIV 1236628 1238197 HC_gene_1528_tx_25 53 + 1236628 1238197 . 2 215,589 0,981 -chrIV 1236628 1238197 HC_gene_1528_tx_26 8 + 1236628 1238197 . 1 1570 0 -chrIV 1236628 1238197 HC_gene_1528_tx_27 1 + 1236628 1238197 . 2 227,567 0,1003 -chrIV 1236628 1238197 HC_gene_1528_tx_28 1 + 1236628 1238197 . 2 618,742 0,828 -chrIV 1236628 1238197 HC_gene_1528_tx_29 1 + 1236628 1238197 . 2 227,589 0,981 -chrIV 1236628 1238351 HC_gene_1528_tx_30 4 + 1236628 1238351 . 2 215,743 0,981 -chrIV 1236628 1238351 HC_gene_1528_tx_31 3 + 1236628 1238351 . 1 1724 0 -chrIV 1236628 1238351 HC_gene_1528_tx_32 1 + 1236628 1238351 . 2 880,762 0,962 -chrIV 1236628 1238351 HC_gene_1528_tx_33 1 + 1236628 1238351 . 2 227,721 0,1003 -chrIV 1236789 1238197 HC_gene_1528_tx_34 5 + 1236789 1238197 . 1 1409 0 -chrIV 1236789 1238197 HC_gene_1528_tx_35 6 + 1236789 1238197 . 2 54,589 0,820 -chrIV 1236789 1238351 HC_gene_1528_tx_36 3 + 1236789 1238351 . 1 1563 0 -chrIV 1236817 1238046 LC_gene_2135_tx_1 1 - 1236817 1238046 . 1 1230 0 -chrIV 1237670 1238197 HC_gene_1528_tx_37 35 + 1237670 1238197 . 1 528 0 -chrIV 1237670 1238351 HC_gene_1528_tx_40 3 + 1237670 1238351 . 1 682 0 -chrIV 1237729 1238197 HC_gene_1528_tx_38 88 + 1237729 1238197 . 1 469 0 -chrIV 1237729 1238197 HC_gene_1528_tx_39 1 + 1237729 1238197 . 2 237,111 0,358 -chrIV 1237729 1238351 HC_gene_1528_tx_41 14 + 1237729 1238351 . 1 623 0 -chrIV 1237840 1238197 HC_gene_1528_tx_43 106 + 1237840 1238197 . 1 358 0 -chrIV 1237840 1238351 HC_gene_1528_tx_42 15 + 1237840 1238351 . 1 512 0 -chrIV 1238099 1238551 HC_gene_2136_tx_1 6 - 1238099 1238551 . 1 453 0 -chrIV 1238099 1238852 HC_gene_2136_tx_2 6 - 1238099 1238852 . 1 754 0 -chrIV 1238099 1239082 HC_gene_2136_tx_5 2 - 1238099 1239082 . 1 984 0 -chrIV 1238199 1238466 HC_gene_2136_tx_9 3 - 1238199 1238466 . 1 268 0 -chrIV 1238199 1238551 HC_gene_2136_tx_10 1 - 1238199 1238551 . 2 133,166 0,187 -chrIV 1238199 1238551 HC_gene_2136_tx_11 25 - 1238199 1238551 . 1 353 0 -chrIV 1238199 1238852 HC_gene_2136_tx_3 23 - 1238199 1238852 . 1 654 0 -chrIV 1238199 1238852 HC_gene_2136_tx_4 3 - 1238199 1238852 . 2 432,28 0,626 -chrIV 1238199 1239023 HC_gene_2136_tx_6 1 - 1238199 1239023 . 1 825 0 -chrIV 1238199 1239082 HC_gene_2136_tx_7 4 - 1238199 1239082 . 1 884 0 -chrIV 1238199 1239082 HC_gene_2136_tx_8 1 - 1238199 1239082 . 2 432,258 0,626 -chrIV 1238342 1238852 HC_gene_2136_tx_12 1 - 1238342 1238852 . 1 511 0 -chrIV 1238616 1239091 HC_gene_1529_tx_1 5 + 1238616 1239091 . 1 476 0 -chrIV 1239348 1239847 MC_gene_2137_tx_1 1 - 1239348 1239847 . 1 500 0 -chrIV 1239410 1239991 HC_gene_1530_tx_1 3344 + 1239410 1239991 . 1 582 0 -chrIV 1239531 1239991 HC_gene_1530_tx_2 422 + 1239531 1239991 . 1 461 0 -chrIV 1239884 1240508 HC_gene_2138_tx_1 9 - 1239884 1240508 . 1 625 0 -chrIV 1239884 1240672 HC_gene_2138_tx_2 43 - 1239884 1240672 . 1 789 0 -chrIV 1240091 1241174 MC_gene_1531_tx_1 1 + 1240091 1241174 . 2 146,767 0,317 -chrIV 1241040 1242100 HC_gene_2139_tx_1 119 - 1241040 1242100 . 1 1061 0 -chrIV 1241040 1242246 HC_gene_2139_tx_2 2 - 1241040 1242246 . 1 1207 0 -chrIV 1241040 1242537 HC_gene_2139_tx_3 2 - 1241040 1242537 . 1 1498 0 -chrIV 1241131 1242100 HC_gene_2139_tx_4 13 - 1241131 1242100 . 1 970 0 -chrIV 1241131 1242100 HC_gene_2139_tx_5 1 - 1241131 1242100 . 2 490,322 0,648 -chrIV 1241131 1242537 HC_gene_2139_tx_6 1 - 1241131 1242537 . 1 1407 0 -chrIV 1241771 1243169 HC_gene_1532_tx_1 2 + 1241771 1243169 . 1 1399 0 -chrIV 1243202 1245824 HC_gene_1533_tx_1 3 + 1243202 1245824 . 1 2623 0 -chrIV 1243202 1245964 HC_gene_1533_tx_2 1 + 1243202 1245964 . 2 199,1950 0,813 -chrIV 1243202 1245964 HC_gene_1533_tx_3 277 + 1243202 1245964 . 1 2763 0 -chrIV 1243202 1245964 HC_gene_1533_tx_4 1 + 1243202 1245964 . 2 1724,974 0,1789 -chrIV 1243202 1245964 HC_gene_1533_tx_5 1 + 1243202 1245964 . 2 140,1887 0,876 -chrIV 1243202 1245964 HC_gene_1533_tx_6 1 + 1243202 1245964 . 2 1796,866 0,1897 -chrIV 1243202 1245964 HC_gene_1533_tx_7 1 + 1243202 1245964 . 2 2553,86 0,2677 -chrIV 1243202 1245964 HC_gene_1533_tx_8 1 + 1243202 1245964 . 2 398,2258 0,505 -chrIV 1243202 1245964 HC_gene_1533_tx_9 1 + 1243202 1245964 . 2 1016,827 0,1936 -chrIV 1243202 1245964 HC_gene_1533_tx_10 1 + 1243202 1245964 . 2 2021,674 0,2089 -chrIV 1243202 1245964 HC_gene_1533_tx_11 1 + 1243202 1245964 . 2 1478,1190 0,1573 -chrIV 1243202 1245964 HC_gene_1533_tx_12 1 + 1243202 1245964 . 2 2552,105 0,2658 -chrIV 1243202 1245964 HC_gene_1533_tx_13 1 + 1243202 1245964 . 2 1822,738 0,2025 -chrIV 1243202 1245964 HC_gene_1533_tx_14 1 + 1243202 1245964 . 2 1724,992 0,1771 -chrIV 1243630 1245964 HC_gene_1533_tx_15 49 + 1243630 1245964 . 1 2335 0 -chrIV 1243630 1245964 HC_gene_1533_tx_16 1 + 1243630 1245964 . 2 506,1592 0,743 -chrIV 1243630 1245964 HC_gene_1533_tx_17 1 + 1243630 1245964 . 2 1251,1029 0,1306 -chrIV 1243630 1245964 HC_gene_1533_tx_18 1 + 1243630 1245964 . 2 1280,981 0,1354 -chrIV 1245337 1245824 HC_gene_1533_tx_19 1 + 1245337 1245824 . 1 488 0 -chrIV 1245337 1245964 HC_gene_1533_tx_20 330 + 1245337 1245964 . 1 628 0 -chrIV 1246072 1248094 HC_gene_1534_tx_1 4 + 1246072 1248094 . 1 2023 0 -chrIV 1248012 1249130 HC_gene_2140_tx_1 4 - 1248012 1249130 . 1 1119 0 -chrIV 1248012 1249916 HC_gene_2140_tx_2 8 - 1248012 1249916 . 1 1905 0 -chrIV 1249036 1249916 HC_gene_2140_tx_3 3 - 1249036 1249916 . 1 881 0 -chrIV 1250134 1251757 HC_gene_1535_tx_1 117 + 1250134 1251757 . 1 1624 0 -chrIV 1250134 1251757 HC_gene_1535_tx_2 1 + 1250134 1251757 . 2 1264,292 0,1332 -chrIV 1250134 1251757 HC_gene_1535_tx_3 1 + 1250134 1251757 . 2 863,699 0,925 -chrIV 1250134 1251757 HC_gene_1535_tx_4 1 + 1250134 1251757 . 2 921,641 0,983 -chrIV 1250134 1251757 HC_gene_1535_tx_5 1 + 1250134 1251757 . 2 928,623 0,1001 -chrIV 1250315 1251757 HC_gene_1535_tx_6 28 + 1250315 1251757 . 1 1443 0 -chrIV 1250315 1251757 HC_gene_1535_tx_7 1 + 1250315 1251757 . 2 747,292 0,1151 -chrIV 1250507 1251757 HC_gene_1535_tx_8 16 + 1250507 1251757 . 1 1251 0 -chrIV 1250507 1251757 HC_gene_1535_tx_9 1 + 1250507 1251757 . 2 141,984 0,267 -chrIV 1250890 1251634 LC_gene_2141_tx_1 1 - 1250890 1251634 . 1 745 0 -chrIV 1252014 1254698 HC_gene_1536_tx_1 1 + 1252014 1254698 . 1 2685 0 -chrIV 1252014 1254710 HC_gene_1536_tx_2 1 + 1252014 1254710 . 1 2697 0 -chrIV 1252014 1254714 HC_gene_1536_tx_3 1 + 1252014 1254714 . 1 2701 0 -chrIV 1252014 1254742 HC_gene_1536_tx_4 1 + 1252014 1254742 . 1 2729 0 -chrIV 1252014 1254758 HC_gene_1536_tx_5 1 + 1252014 1254758 . 1 2745 0 -chrIV 1252014 1254765 HC_gene_1536_tx_6 1 + 1252014 1254765 . 1 2752 0 -chrIV 1252014 1254977 HC_gene_1536_tx_7 4 + 1252014 1254977 . 1 2964 0 -chrIV 1254887 1255345 HC_gene_2142_tx_1 9 - 1254887 1255345 . 1 459 0 -chrIV 1254887 1256756 HC_gene_2142_tx_2 1 - 1254887 1256756 . 2 1637,158 0,1712 -chrIV 1254887 1256756 HC_gene_2142_tx_3 4 - 1254887 1256756 . 1 1870 0 -chrIV 1254887 1256876 HC_gene_2142_tx_4 18 - 1254887 1256876 . 1 1990 0 -chrIV 1254887 1256876 HC_gene_2142_tx_5 1 - 1254887 1256876 . 2 883,1056 0,934 -chrIV 1254887 1256876 HC_gene_2142_tx_6 1 - 1254887 1256876 . 2 55,1310 0,680 -chrIV 1257276 1257919 HC_gene_2143_tx_1 5 - 1257276 1257919 . 1 644 0 -chrIV 1257276 1258064 HC_gene_2143_tx_2 45 - 1257276 1258064 . 1 789 0 -chrIV 1257276 1258483 HC_gene_2143_tx_3 7 - 1257276 1258483 . 1 1208 0 -chrIV 1258215 1259863 HC_gene_1537_tx_1 2 + 1258215 1259863 . 1 1649 0 -chrIV 1258326 1259982 HC_gene_1537_tx_2 1 + 1258326 1259982 . 1 1657 0 -chrIV 1258666 1259863 HC_gene_1537_tx_3 36 + 1258666 1259863 . 1 1198 0 -chrIV 1258666 1259863 HC_gene_1537_tx_4 1 + 1258666 1259863 . 2 514,595 0,603 -chrIV 1258666 1259982 HC_gene_1537_tx_5 7 + 1258666 1259982 . 1 1317 0 -chrIV 1258666 1261386 HC_gene_1537_tx_11 1 + 1258666 1261386 . 1 2721 0 -chrIV 1258670 1259863 HC_gene_1537_tx_6 1 + 1258670 1259863 . 1 1194 0 -chrIV 1258671 1259863 HC_gene_1537_tx_7 1 + 1258671 1259863 . 1 1193 0 -chrIV 1258808 1259863 HC_gene_1537_tx_8 6 + 1258808 1259863 . 1 1056 0 -chrIV 1258860 1259863 HC_gene_1537_tx_9 1 + 1258860 1259863 . 1 1004 0 -chrIV 1258860 1261386 HC_gene_1537_tx_12 1 + 1258860 1261386 . 1 2527 0 -chrIV 1259059 1259863 HC_gene_1537_tx_10 4 + 1259059 1259863 . 1 805 0 -chrIV 1259760 1260169 HC_gene_2144_tx_1 8 - 1259760 1260169 . 1 410 0 -chrIV 1259883 1261386 HC_gene_1537_tx_13 15 + 1259883 1261386 . 1 1504 0 -chrIV 1260042 1261386 HC_gene_1537_tx_14 1 + 1260042 1261386 . 1 1345 0 -chrIV 1260660 1261374 HC_gene_2145_tx_1 1 - 1260660 1261374 . 1 715 0 -chrIV 1260686 1261386 HC_gene_1537_tx_15 5 + 1260686 1261386 . 1 701 0 -chrIV 1261627 1263063 HC_gene_1538_tx_1 149 + 1261627 1263063 . 1 1437 0 -chrIV 1261627 1263063 HC_gene_1538_tx_2 1 + 1261627 1263063 . 2 748,611 0,826 -chrIV 1261627 1263063 HC_gene_1538_tx_3 1 + 1261627 1263063 . 3 441,229,627 0,519,810 -chrIV 1261627 1263063 HC_gene_1538_tx_4 1 + 1261627 1263063 . 2 739,616 0,821 -chrIV 1261953 1263063 HC_gene_1538_tx_5 14 + 1261953 1263063 . 1 1111 0 -chrIV 1262207 1263063 HC_gene_1538_tx_6 14 + 1262207 1263063 . 1 857 0 -chrIV 1262303 1263063 HC_gene_1538_tx_7 18 + 1262303 1263063 . 1 761 0 -chrIV 1262467 1263063 HC_gene_1538_tx_8 10 + 1262467 1263063 . 1 597 0 -chrIV 1262522 1263063 HC_gene_1538_tx_9 22 + 1262522 1263063 . 1 542 0 -chrIV 1262522 1263063 HC_gene_1538_tx_10 1 + 1262522 1263063 . 2 231,278 0,264 -chrIV 1263189 1266255 HC_gene_1539_tx_1 18 + 1263189 1266255 . 1 3067 0 -chrIV 1263189 1266255 HC_gene_1539_tx_2 1 + 1263189 1266255 . 2 1059,1917 0,1150 -chrIV 1263189 1266335 HC_gene_1539_tx_3 1 + 1263189 1266335 . 1 3147 0 -chrIV 1263434 1266255 HC_gene_1539_tx_4 1 + 1263434 1266255 . 1 2822 0 -chrIV 1263856 1266255 HC_gene_1539_tx_5 2 + 1263856 1266255 . 1 2400 0 -chrIV 1264099 1266255 HC_gene_1539_tx_6 2 + 1264099 1266255 . 1 2157 0 -chrIV 1264099 1266335 HC_gene_1539_tx_7 1 + 1264099 1266335 . 1 2237 0 -chrIV 1265710 1266255 HC_gene_1539_tx_8 13 + 1265710 1266255 . 1 546 0 -chrIV 1265710 1266335 HC_gene_1539_tx_9 3 + 1265710 1266335 . 1 626 0 -chrIV 1265814 1266255 HC_gene_1539_tx_10 19 + 1265814 1266255 . 1 442 0 -chrIV 1265814 1266335 HC_gene_1539_tx_11 1 + 1265814 1266335 . 1 522 0 -chrIV 1265981 1266629 HC_gene_2146_tx_1 1 - 1265981 1266629 . 1 649 0 -chrIV 1265981 1266953 HC_gene_2146_tx_2 3 - 1265981 1266953 . 1 973 0 -chrIV 1265981 1266953 HC_gene_2146_tx_3 1 - 1265981 1266953 . 2 789,92 0,881 -chrIV 1266186 1266443 HC_gene_2146_tx_4 6 - 1266186 1266443 . 1 258 0 -chrIV 1266186 1266504 HC_gene_2146_tx_5 13 - 1266186 1266504 . 1 319 0 -chrIV 1266186 1266629 HC_gene_2146_tx_6 18 - 1266186 1266629 . 1 444 0 -chrIV 1266186 1266953 HC_gene_2146_tx_7 45 - 1266186 1266953 . 1 768 0 -chrIV 1266186 1266953 HC_gene_2146_tx_8 114 - 1266186 1266953 . 2 584,92 0,676 -chrIV 1266186 1266953 HC_gene_2146_tx_9 1 - 1266186 1266953 . 2 606,92 0,676 -chrIV 1266186 1266953 HC_gene_2146_tx_10 1 - 1266186 1266953 . 2 584,76 0,692 -chrIV 1266305 1266629 HC_gene_2146_tx_13 2 - 1266305 1266629 . 1 325 0 -chrIV 1266305 1266953 HC_gene_2146_tx_11 25 - 1266305 1266953 . 2 465,92 0,557 -chrIV 1266305 1266953 HC_gene_2146_tx_12 9 - 1266305 1266953 . 1 649 0 -chrIV 1267094 1267429 HC_gene_1540_tx_1 21 + 1267094 1267429 . 1 336 0 -chrIV 1267107 1267429 HC_gene_1540_tx_2 1 + 1267107 1267429 . 1 323 0 -chrIV 1267395 1269567 HC_gene_1541_tx_1 1 + 1267395 1269567 . 1 2173 0 -chrIV 1269759 1271616 MC_gene_2147_tx_1 1 - 1269759 1271616 . 1 1858 0 -chrIV 1269862 1270847 HC_gene_1542_tx_1 2 + 1269862 1270847 . 1 986 0 -chrIV 1269998 1270847 HC_gene_1542_tx_2 433 + 1269998 1270847 . 1 850 0 -chrIV 1269998 1270954 HC_gene_1542_tx_3 3 + 1269998 1270954 . 1 957 0 -chrIV 1270185 1270847 HC_gene_1542_tx_4 53 + 1270185 1270847 . 1 663 0 -chrIV 1270309 1270847 HC_gene_1542_tx_5 51 + 1270309 1270847 . 1 539 0 -chrIV 1270374 1270847 HC_gene_1542_tx_6 17 + 1270374 1270847 . 1 474 0 -chrIV 1270473 1270847 HC_gene_1542_tx_7 78 + 1270473 1270847 . 1 375 0 -chrIV 1271042 1272257 HC_gene_1543_tx_1 40 + 1271042 1272257 . 1 1216 0 -chrIV 1271683 1272257 HC_gene_1543_tx_2 8 + 1271683 1272257 . 1 575 0 -chrIV 1272168 1273077 MC_gene_2148_tx_1 1 - 1272168 1273077 . 1 910 0 -chrIV 1274182 1274790 MC_gene_1544_tx_1 1 + 1274182 1274790 . 1 609 0 -chrIV 1275380 1276238 HC_gene_1545_tx_1 1 + 1275380 1276238 . 1 859 0 -chrIV 1275380 1276326 HC_gene_1545_tx_2 3 + 1275380 1276326 . 1 947 0 -chrIV 1275380 1276418 HC_gene_1545_tx_3 16 + 1275380 1276418 . 1 1039 0 -chrIV 1276218 1277362 HC_gene_2149_tx_1 3 - 1276218 1277362 . 1 1145 0 -chrIV 1276349 1276993 HC_gene_2149_tx_29 3 - 1276349 1276993 . 1 645 0 -chrIV 1276349 1277069 HC_gene_2149_tx_30 1 - 1276349 1277069 . 1 721 0 -chrIV 1276349 1277362 HC_gene_2149_tx_2 11 - 1276349 1277362 . 1 1014 0 -chrIV 1276484 1277069 HC_gene_2149_tx_31 1 - 1276484 1277069 . 1 586 0 -chrIV 1276484 1277362 HC_gene_2149_tx_3 17 - 1276484 1277362 . 1 879 0 -chrIV 1276485 1276993 HC_gene_2149_tx_32 1 - 1276485 1276993 . 1 509 0 -chrIV 1276485 1277362 HC_gene_2149_tx_4 1 - 1276485 1277362 . 1 878 0 -chrIV 1276487 1277362 HC_gene_2149_tx_5 1 - 1276487 1277362 . 1 876 0 -chrIV 1276488 1276993 HC_gene_2149_tx_33 1 - 1276488 1276993 . 1 506 0 -chrIV 1276488 1277069 HC_gene_2149_tx_34 1 - 1276488 1277069 . 1 582 0 -chrIV 1276488 1277362 HC_gene_2149_tx_6 8 - 1276488 1277362 . 1 875 0 -chrIV 1276490 1277362 HC_gene_2149_tx_7 13 - 1276490 1277362 . 1 873 0 -chrIV 1276492 1277069 HC_gene_2149_tx_35 1 - 1276492 1277069 . 1 578 0 -chrIV 1276492 1277362 HC_gene_2149_tx_8 7 - 1276492 1277362 . 1 871 0 -chrIV 1276493 1276993 HC_gene_2149_tx_36 1 - 1276493 1276993 . 1 501 0 -chrIV 1276493 1277069 HC_gene_2149_tx_37 2 - 1276493 1277069 . 1 577 0 -chrIV 1276493 1277362 HC_gene_2149_tx_9 8 - 1276493 1277362 . 1 870 0 -chrIV 1276494 1277362 HC_gene_2149_tx_10 4 - 1276494 1277362 . 1 869 0 -chrIV 1276495 1277069 HC_gene_2149_tx_38 2 - 1276495 1277069 . 1 575 0 -chrIV 1276495 1277362 HC_gene_2149_tx_11 10 - 1276495 1277362 . 1 868 0 -chrIV 1276496 1276993 HC_gene_2149_tx_39 2 - 1276496 1276993 . 1 498 0 -chrIV 1276496 1277362 HC_gene_2149_tx_12 5 - 1276496 1277362 . 1 867 0 -chrIV 1276497 1276993 HC_gene_2149_tx_40 1 - 1276497 1276993 . 1 497 0 -chrIV 1276497 1277069 HC_gene_2149_tx_41 3 - 1276497 1277069 . 1 573 0 -chrIV 1276497 1277362 HC_gene_2149_tx_13 14 - 1276497 1277362 . 1 866 0 -chrIV 1276498 1277362 HC_gene_2149_tx_14 5 - 1276498 1277362 . 1 865 0 -chrIV 1276499 1277362 HC_gene_2149_tx_15 1 - 1276499 1277362 . 1 864 0 -chrIV 1276500 1277069 HC_gene_2149_tx_42 1 - 1276500 1277069 . 1 570 0 -chrIV 1276500 1277362 HC_gene_2149_tx_16 2 - 1276500 1277362 . 1 863 0 -chrIV 1276501 1277362 HC_gene_2149_tx_17 5 - 1276501 1277362 . 1 862 0 -chrIV 1276502 1277069 HC_gene_2149_tx_43 2 - 1276502 1277069 . 1 568 0 -chrIV 1276503 1276993 HC_gene_2149_tx_44 1 - 1276503 1276993 . 1 491 0 -chrIV 1276503 1277069 HC_gene_2149_tx_45 2 - 1276503 1277069 . 1 567 0 -chrIV 1276503 1277362 HC_gene_2149_tx_18 4 - 1276503 1277362 . 1 860 0 -chrIV 1276504 1276993 HC_gene_2149_tx_46 1 - 1276504 1276993 . 1 490 0 -chrIV 1276504 1277362 HC_gene_2149_tx_19 3 - 1276504 1277362 . 1 859 0 -chrIV 1276506 1277362 HC_gene_2149_tx_20 1 - 1276506 1277362 . 1 857 0 -chrIV 1276507 1277362 HC_gene_2149_tx_21 2 - 1276507 1277362 . 1 856 0 -chrIV 1276508 1277362 HC_gene_2149_tx_22 8 - 1276508 1277362 . 1 855 0 -chrIV 1276509 1277362 HC_gene_2149_tx_23 2 - 1276509 1277362 . 1 854 0 -chrIV 1276510 1277362 HC_gene_2149_tx_24 4 - 1276510 1277362 . 1 853 0 -chrIV 1276512 1277362 HC_gene_2149_tx_25 2 - 1276512 1277362 . 1 851 0 -chrIV 1276513 1277362 HC_gene_2149_tx_26 6 - 1276513 1277362 . 1 850 0 -chrIV 1276514 1277069 HC_gene_2149_tx_47 2 - 1276514 1277069 . 1 556 0 -chrIV 1276514 1277362 HC_gene_2149_tx_27 5 - 1276514 1277362 . 1 849 0 -chrIV 1276515 1277362 HC_gene_2149_tx_28 5 - 1276515 1277362 . 1 848 0 -chrIV 1276612 1277207 MC_gene_1546_tx_1 1 + 1276612 1277207 . 1 596 0 -chrIV 1277491 1278506 HC_gene_2150_tx_1 1 - 1277491 1278506 . 1 1016 0 -chrIV 1277592 1279199 MC_gene_1547_tx_1 1 + 1277592 1279199 . 1 1608 0 -chrIV 1277823 1278579 MC_gene_1547_tx_2 1 + 1277823 1278579 . 1 757 0 -chrIV 1278307 1278579 MC_gene_1547_tx_3 1 + 1278307 1278579 . 1 273 0 -chrIV 1279079 1283914 HC_gene_1548_tx_1 1 + 1279079 1283914 . 1 4836 0 -chrIV 1279106 1279943 HC_gene_2151_tx_1 8 - 1279106 1279943 . 1 838 0 -chrIV 1279640 1283914 HC_gene_1548_tx_2 2 + 1279640 1283914 . 1 4275 0 -chrIV 1280185 1283914 HC_gene_1548_tx_3 1 + 1280185 1283914 . 1 3730 0 -chrIV 1283227 1283914 HC_gene_1548_tx_4 9 + 1283227 1283914 . 1 688 0 -chrIV 1283997 1288019 HC_gene_2152_tx_1 3 - 1283997 1288019 . 1 4023 0 -chrIV 1288043 1288580 HC_gene_2153_tx_1 23 - 1288043 1288580 . 1 538 0 -chrIV 1288043 1288631 HC_gene_2153_tx_2 1 - 1288043 1288631 . 1 589 0 -chrIV 1288043 1288733 HC_gene_2153_tx_3 38 - 1288043 1288733 . 1 691 0 -chrIV 1288043 1288733 HC_gene_2153_tx_4 1 - 1288043 1288733 . 2 151,484 0,207 -chrIV 1288043 1288888 HC_gene_2153_tx_5 1 - 1288043 1288888 . 1 846 0 -chrIV 1288043 1288891 HC_gene_2153_tx_6 1 - 1288043 1288891 . 1 849 0 -chrIV 1288043 1288893 HC_gene_2153_tx_7 1 - 1288043 1288893 . 1 851 0 -chrIV 1288043 1288898 HC_gene_2153_tx_8 1 - 1288043 1288898 . 1 856 0 -chrIV 1288043 1288901 HC_gene_2153_tx_9 1 - 1288043 1288901 . 1 859 0 -chrIV 1288043 1288906 HC_gene_2153_tx_10 198 - 1288043 1288906 . 1 864 0 -chrIV 1288043 1289135 HC_gene_2153_tx_11 1 - 1288043 1289135 . 1 1093 0 -chrIV 1288265 1289029 HC_gene_1549_tx_1 4 + 1288265 1289029 . 1 765 0 -chrIV 1289366 1291083 HC_gene_1550_tx_1 3 + 1289366 1291083 . 1 1718 0 -chrIV 1290961 1292151 MC_gene_2154_tx_1 1 - 1290961 1292151 . 1 1191 0 -chrIV 1291171 1292013 MC_gene_2154_tx_2 1 - 1291171 1292013 . 1 843 0 -chrIV 1292141 1292357 HC_gene_1551_tx_1 1 + 1292141 1292357 . 1 217 0 -chrIV 1292299 1293140 HC_gene_2155_tx_1 86 - 1292299 1293140 . 1 842 0 -chrIV 1292505 1293199 MC_gene_1552_tx_1 1 + 1292505 1293199 . 1 695 0 -chrIV 1293304 1294444 HC_gene_2156_tx_1 29 - 1293304 1294444 . 1 1141 0 -chrIV 1293389 1294423 LC_gene_1553_tx_1 1 + 1293389 1294423 . 1 1035 0 -chrIV 1293866 1294444 HC_gene_2156_tx_2 2 - 1293866 1294444 . 1 579 0 -chrIV 1293958 1294444 HC_gene_2156_tx_3 5 - 1293958 1294444 . 1 487 0 -chrIV 1294667 1295545 HC_gene_1554_tx_1 133 + 1294667 1295545 . 1 879 0 -chrIV 1294667 1295636 HC_gene_1554_tx_2 7 + 1294667 1295636 . 1 970 0 -chrIV 1294777 1295545 HC_gene_1554_tx_3 15 + 1294777 1295545 . 1 769 0 -chrIV 1294777 1295636 HC_gene_1554_tx_4 2 + 1294777 1295636 . 1 860 0 -chrIV 1295049 1295545 HC_gene_1554_tx_5 31 + 1295049 1295545 . 1 497 0 -chrIV 1295337 1296884 HC_gene_2157_tx_1 4 - 1295337 1296884 . 1 1548 0 -chrIV 1295411 1296884 HC_gene_2157_tx_2 14 - 1295411 1296884 . 1 1474 0 -chrIV 1295783 1296792 HC_gene_1555_tx_1 5 + 1295783 1296792 . 1 1010 0 -chrIV 1295983 1296792 HC_gene_1555_tx_2 5 + 1295983 1296792 . 1 810 0 -chrIV 1296688 1296884 HC_gene_2157_tx_3 2 - 1296688 1296884 . 1 197 0 -chrIV 1296688 1297453 HC_gene_2157_tx_4 3 - 1296688 1297453 . 1 766 0 -chrIV 1296688 1298206 HC_gene_2157_tx_5 7 - 1296688 1298206 . 1 1519 0 -chrIV 1296688 1298206 HC_gene_2157_tx_6 1 - 1296688 1298206 . 2 600,847 0,672 -chrIV 1296950 1297453 HC_gene_2157_tx_8 1 - 1296950 1297453 . 1 504 0 -chrIV 1296950 1297785 HC_gene_2157_tx_9 2 - 1296950 1297785 . 1 836 0 -chrIV 1296950 1298206 HC_gene_2157_tx_7 17 - 1296950 1298206 . 1 1257 0 -chrIV 1297207 1298042 LC_gene_1556_tx_1 1 + 1297207 1298042 . 1 836 0 -chrIV 1297261 1298206 HC_gene_2157_tx_10 3 - 1297261 1298206 . 1 946 0 -chrIV 1298368 1299540 HC_gene_1557_tx_1 2 + 1298368 1299540 . 1 1173 0 -chrIV 1298368 1300618 HC_gene_1557_tx_2 2 + 1298368 1300618 . 1 2251 0 -chrIV 1298368 1301046 HC_gene_1557_tx_3 12 + 1298368 1301046 . 1 2679 0 -chrIV 1300269 1301002 MC_gene_2158_tx_1 1 - 1300269 1301002 . 1 734 0 -chrIV 1300953 1301270 MC_gene_2159_tx_1 1 - 1300953 1301270 . 1 318 0 -chrIV 1301335 1302197 HC_gene_1558_tx_1 1 + 1301335 1302197 . 1 863 0 -chrIV 1301335 1302201 HC_gene_1558_tx_2 1 + 1301335 1302201 . 1 867 0 -chrIV 1301335 1302208 HC_gene_1558_tx_3 1 + 1301335 1302208 . 1 874 0 -chrIV 1301335 1302220 HC_gene_1558_tx_4 1 + 1301335 1302220 . 1 886 0 -chrIV 1301589 1302184 HC_gene_1559_tx_1 83 + 1301589 1302184 . 1 596 0 -chrIV 1301589 1302184 HC_gene_1559_tx_2 1 + 1301589 1302184 . 2 241,304 0,292 -chrIV 1301589 1302185 HC_gene_1559_tx_3 32 + 1301589 1302185 . 1 597 0 -chrIV 1301589 1302186 HC_gene_1559_tx_4 150 + 1301589 1302186 . 1 598 0 -chrIV 1301589 1302187 HC_gene_1559_tx_5 32 + 1301589 1302187 . 1 599 0 -chrIV 1301589 1302188 HC_gene_1559_tx_6 147 + 1301589 1302188 . 1 600 0 -chrIV 1301589 1302189 HC_gene_1559_tx_7 21 + 1301589 1302189 . 1 601 0 -chrIV 1301589 1302190 HC_gene_1559_tx_8 10 + 1301589 1302190 . 1 602 0 -chrIV 1301589 1302191 HC_gene_1559_tx_9 6 + 1301589 1302191 . 1 603 0 -chrIV 1301589 1302192 HC_gene_1559_tx_10 101 + 1301589 1302192 . 1 604 0 -chrIV 1301589 1302193 HC_gene_1559_tx_11 12 + 1301589 1302193 . 1 605 0 -chrIV 1301589 1302194 HC_gene_1559_tx_12 2 + 1301589 1302194 . 1 606 0 -chrIV 1301589 1302195 HC_gene_1559_tx_13 6 + 1301589 1302195 . 1 607 0 -chrIV 1301589 1302196 HC_gene_1559_tx_14 30 + 1301589 1302196 . 1 608 0 -chrIV 1301589 1302197 HC_gene_1559_tx_15 98 + 1301589 1302197 . 1 609 0 -chrIV 1301589 1302197 HC_gene_1559_tx_16 1 + 1301589 1302197 . 2 235,334 0,275 -chrIV 1301589 1302198 HC_gene_1559_tx_17 24 + 1301589 1302198 . 1 610 0 -chrIV 1301589 1302199 HC_gene_1559_tx_18 84 + 1301589 1302199 . 1 611 0 -chrIV 1301589 1302200 HC_gene_1559_tx_19 24 + 1301589 1302200 . 1 612 0 -chrIV 1301589 1302201 HC_gene_1559_tx_20 15 + 1301589 1302201 . 1 613 0 -chrIV 1301589 1302202 HC_gene_1559_tx_21 209 + 1301589 1302202 . 1 614 0 -chrIV 1301589 1302203 HC_gene_1559_tx_22 183 + 1301589 1302203 . 1 615 0 -chrIV 1301589 1302203 HC_gene_1559_tx_23 1 + 1301589 1302203 . 2 94,366 0,249 -chrIV 1301589 1302204 HC_gene_1559_tx_24 10 + 1301589 1302204 . 1 616 0 -chrIV 1301589 1302205 HC_gene_1559_tx_25 62 + 1301589 1302205 . 1 617 0 -chrIV 1301589 1302206 HC_gene_1559_tx_26 100 + 1301589 1302206 . 1 618 0 -chrIV 1301589 1302207 HC_gene_1559_tx_27 20 + 1301589 1302207 . 1 619 0 -chrIV 1301589 1302208 HC_gene_1559_tx_28 23 + 1301589 1302208 . 1 620 0 -chrIV 1301589 1302209 HC_gene_1559_tx_29 41 + 1301589 1302209 . 1 621 0 -chrIV 1301589 1302210 HC_gene_1559_tx_30 87 + 1301589 1302210 . 1 622 0 -chrIV 1301589 1302210 HC_gene_1559_tx_31 1 + 1301589 1302210 . 2 412,52 0,570 -chrIV 1301589 1302211 HC_gene_1559_tx_32 6 + 1301589 1302211 . 1 623 0 -chrIV 1301589 1302212 HC_gene_1559_tx_33 8 + 1301589 1302212 . 1 624 0 -chrIV 1301589 1302213 HC_gene_1559_tx_34 7 + 1301589 1302213 . 1 625 0 -chrIV 1301589 1302214 HC_gene_1559_tx_35 2 + 1301589 1302214 . 1 626 0 -chrIV 1301589 1302215 HC_gene_1559_tx_36 84 + 1301589 1302215 . 1 627 0 -chrIV 1301589 1302216 HC_gene_1559_tx_37 1 + 1301589 1302216 . 1 628 0 -chrIV 1301589 1302217 HC_gene_1559_tx_38 17 + 1301589 1302217 . 1 629 0 -chrIV 1301589 1302218 HC_gene_1559_tx_39 1 + 1301589 1302218 . 1 630 0 -chrIV 1301589 1302219 HC_gene_1559_tx_40 1 + 1301589 1302219 . 1 631 0 -chrIV 1301589 1302220 HC_gene_1559_tx_41 29 + 1301589 1302220 . 1 632 0 -chrIV 1301589 1302221 HC_gene_1559_tx_42 3 + 1301589 1302221 . 1 633 0 -chrIV 1301589 1302224 HC_gene_1559_tx_43 4 + 1301589 1302224 . 1 636 0 -chrIV 1301589 1302225 HC_gene_1559_tx_44 1 + 1301589 1302225 . 1 637 0 -chrIV 1301589 1302241 HC_gene_1559_tx_45 1 + 1301589 1302241 . 1 653 0 -chrIV 1301589 1302260 HC_gene_1559_tx_46 1 + 1301589 1302260 . 1 672 0 -chrIV 1301589 1302266 HC_gene_1559_tx_47 1 + 1301589 1302266 . 1 678 0 -chrIV 1301589 1302317 HC_gene_1559_tx_48 1 + 1301589 1302317 . 1 729 0 -chrIV 1301589 1302354 HC_gene_1559_tx_49 1 + 1301589 1302354 . 1 766 0 -chrIV 1301589 1302359 HC_gene_1559_tx_50 1 + 1301589 1302359 . 1 771 0 -chrIV 1301589 1302714 HC_gene_1559_tx_86 40 + 1301589 1302714 . 1 1126 0 -chrIV 1301722 1302184 HC_gene_1559_tx_51 4 + 1301722 1302184 . 1 463 0 -chrIV 1301722 1302185 HC_gene_1559_tx_52 5 + 1301722 1302185 . 1 464 0 -chrIV 1301722 1302186 HC_gene_1559_tx_53 18 + 1301722 1302186 . 1 465 0 -chrIV 1301722 1302187 HC_gene_1559_tx_54 3 + 1301722 1302187 . 1 466 0 -chrIV 1301722 1302188 HC_gene_1559_tx_55 17 + 1301722 1302188 . 1 467 0 -chrIV 1301722 1302189 HC_gene_1559_tx_56 1 + 1301722 1302189 . 1 468 0 -chrIV 1301722 1302190 HC_gene_1559_tx_57 2 + 1301722 1302190 . 1 469 0 -chrIV 1301722 1302192 HC_gene_1559_tx_58 7 + 1301722 1302192 . 1 471 0 -chrIV 1301722 1302193 HC_gene_1559_tx_59 1 + 1301722 1302193 . 1 472 0 -chrIV 1301722 1302194 HC_gene_1559_tx_60 1 + 1301722 1302194 . 1 473 0 -chrIV 1301722 1302195 HC_gene_1559_tx_61 1 + 1301722 1302195 . 1 474 0 -chrIV 1301722 1302196 HC_gene_1559_tx_62 4 + 1301722 1302196 . 1 475 0 -chrIV 1301722 1302197 HC_gene_1559_tx_63 4 + 1301722 1302197 . 1 476 0 -chrIV 1301722 1302198 HC_gene_1559_tx_64 2 + 1301722 1302198 . 1 477 0 -chrIV 1301722 1302199 HC_gene_1559_tx_65 5 + 1301722 1302199 . 1 478 0 -chrIV 1301722 1302200 HC_gene_1559_tx_66 1 + 1301722 1302200 . 1 479 0 -chrIV 1301722 1302201 HC_gene_1559_tx_67 1 + 1301722 1302201 . 1 480 0 -chrIV 1301722 1302202 HC_gene_1559_tx_68 9 + 1301722 1302202 . 1 481 0 -chrIV 1301722 1302203 HC_gene_1559_tx_69 14 + 1301722 1302203 . 1 482 0 -chrIV 1301722 1302204 HC_gene_1559_tx_70 4 + 1301722 1302204 . 1 483 0 -chrIV 1301722 1302205 HC_gene_1559_tx_71 7 + 1301722 1302205 . 1 484 0 -chrIV 1301722 1302206 HC_gene_1559_tx_72 11 + 1301722 1302206 . 1 485 0 -chrIV 1301722 1302207 HC_gene_1559_tx_73 5 + 1301722 1302207 . 1 486 0 -chrIV 1301722 1302208 HC_gene_1559_tx_74 3 + 1301722 1302208 . 1 487 0 -chrIV 1301722 1302209 HC_gene_1559_tx_75 2 + 1301722 1302209 . 1 488 0 -chrIV 1301722 1302210 HC_gene_1559_tx_76 7 + 1301722 1302210 . 1 489 0 -chrIV 1301722 1302211 HC_gene_1559_tx_77 2 + 1301722 1302211 . 1 490 0 -chrIV 1301722 1302212 HC_gene_1559_tx_78 1 + 1301722 1302212 . 1 491 0 -chrIV 1301722 1302215 HC_gene_1559_tx_79 4 + 1301722 1302215 . 1 494 0 -chrIV 1301722 1302217 HC_gene_1559_tx_80 3 + 1301722 1302217 . 1 496 0 -chrIV 1301722 1302218 HC_gene_1559_tx_81 1 + 1301722 1302218 . 1 497 0 -chrIV 1301722 1302220 HC_gene_1559_tx_82 3 + 1301722 1302220 . 1 499 0 -chrIV 1301722 1302225 HC_gene_1559_tx_83 1 + 1301722 1302225 . 1 504 0 -chrIV 1301722 1302301 HC_gene_1559_tx_84 1 + 1301722 1302301 . 1 580 0 -chrIV 1301722 1302306 HC_gene_1559_tx_85 1 + 1301722 1302306 . 1 585 0 -chrIV 1301722 1302714 HC_gene_1559_tx_87 3 + 1301722 1302714 . 1 993 0 -chrIV 1302066 1302625 MC_gene_2160_tx_1 1 - 1302066 1302625 . 1 560 0 -chrIV 1303043 1303692 LC_gene_2161_tx_1 1 - 1303043 1303692 . 1 650 0 -chrIV 1303124 1305342 HC_gene_1560_tx_1 5 + 1303124 1305342 . 1 2219 0 -chrIV 1303124 1305461 HC_gene_1560_tx_2 1 + 1303124 1305461 . 2 1192,1107 0,1231 -chrIV 1303124 1305461 HC_gene_1560_tx_3 3 + 1303124 1305461 . 1 2338 0 -chrIV 1305985 1306248 MC_gene_1561_tx_1 1 + 1305985 1306248 . 1 264 0 -chrIV 1308676 1311878 HC_gene_1562_tx_1 1 + 1308676 1311878 . 1 3203 0 -chrIV 1310176 1311878 HC_gene_1562_tx_2 8 + 1310176 1311878 . 1 1703 0 -chrIV 1310176 1311878 HC_gene_1562_tx_3 1 + 1310176 1311878 . 2 174,1477 0,226 -chrIV 1311405 1311878 HC_gene_1562_tx_4 17 + 1311405 1311878 . 1 474 0 -chrIV 1311739 1312565 HC_gene_2162_tx_1 2 - 1311739 1312565 . 1 827 0 -chrIV 1311938 1312565 HC_gene_2162_tx_2 2 - 1311938 1312565 . 1 628 0 -chrIV 1311949 1314936 HC_gene_1563_tx_1 3 + 1311949 1314936 . 1 2988 0 -chrIV 1312168 1314936 HC_gene_1563_tx_2 1 + 1312168 1314936 . 1 2769 0 -chrIV 1315034 1317830 HC_gene_2163_tx_1 2 - 1315034 1317830 . 1 2797 0 -chrIV 1315297 1317830 HC_gene_2163_tx_2 1 - 1315297 1317830 . 1 2534 0 -chrIV 1317856 1319235 HC_gene_2164_tx_1 3 - 1317856 1319235 . 1 1380 0 -chrIV 1317981 1319054 HC_gene_2164_tx_2 3 - 1317981 1319054 . 1 1074 0 -chrIV 1317981 1319235 HC_gene_2164_tx_3 19 - 1317981 1319235 . 1 1255 0 -chrIV 1317981 1319235 HC_gene_2164_tx_4 1 - 1317981 1319235 . 2 985,136 0,1119 -chrIV 1318126 1319264 LC_gene_1564_tx_1 1 + 1318126 1319264 . 1 1139 0 -chrIV 1319343 1319866 HC_gene_2165_tx_1 55 - 1319343 1319866 . 2 275,79 0,445 -chrIV 1319343 1319866 HC_gene_2165_tx_2 5 - 1319343 1319866 . 3 275,23,50 0,355,474 -chrIV 1319343 1319866 HC_gene_2165_tx_3 2 - 1319343 1319866 . 2 275,169 0,355 -chrIV 1319343 1319866 HC_gene_2165_tx_4 16 - 1319343 1319866 . 2 275,58 0,466 -chrIV 1319343 1319866 HC_gene_2165_tx_5 15 - 1319343 1319866 . 2 275,68 0,456 -chrIV 1319343 1319866 HC_gene_2165_tx_6 3 - 1319343 1319866 . 1 524 0 -chrIV 1319343 1319866 HC_gene_2165_tx_7 1 - 1319343 1319866 . 2 259,68 0,456 -chrIV 1319343 1319866 HC_gene_2165_tx_8 1 - 1319343 1319866 . 2 273,64 0,460 -chrIV 1319343 1319866 HC_gene_2165_tx_9 2 - 1319343 1319866 . 2 378,50 0,474 -chrIV 1319343 1319866 HC_gene_2165_tx_10 2 - 1319343 1319866 . 2 275,54 0,470 -chrIV 1319343 1319866 HC_gene_2165_tx_11 2 - 1319343 1319866 . 2 275,50 0,474 -chrIV 1319343 1319866 HC_gene_2165_tx_12 1 - 1319343 1319866 . 2 284,50 0,474 -chrIV 1319442 1319874 MC_gene_1565_tx_1 1 + 1319442 1319874 . 1 433 0 -chrIV 1320017 1322041 HC_gene_1566_tx_1 4 + 1320017 1322041 . 1 2025 0 -chrIV 1320017 1322041 HC_gene_1566_tx_2 1 + 1320017 1322041 . 2 702,961 0,1064 -chrIV 1321427 1321979 MC_gene_2166_tx_1 1 - 1321427 1321979 . 1 553 0 -chrIV 1321918 1322262 MC_gene_2167_tx_1 1 - 1321918 1322262 . 1 345 0 -chrIV 1322172 1323485 HC_gene_1567_tx_1 107 + 1322172 1323485 . 1 1314 0 -chrIV 1323150 1323485 HC_gene_1567_tx_2 26 + 1323150 1323485 . 1 336 0 -chrIV 1323347 1324146 HC_gene_2168_tx_1 5 - 1323347 1324146 . 1 800 0 -chrIV 1323347 1324268 HC_gene_2168_tx_2 58 - 1323347 1324268 . 1 922 0 -chrIV 1323347 1324815 HC_gene_2168_tx_3 1 - 1323347 1324815 . 1 1469 0 -chrIV 1323347 1325319 HC_gene_2168_tx_4 2 - 1323347 1325319 . 1 1973 0 -chrIV 1324320 1324815 HC_gene_2168_tx_5 134 - 1324320 1324815 . 1 496 0 -chrIV 1324320 1325075 HC_gene_2168_tx_6 82 - 1324320 1325075 . 1 756 0 -chrIV 1324320 1325319 HC_gene_2168_tx_7 474 - 1324320 1325319 . 1 1000 0 -chrIV 1324320 1325319 HC_gene_2168_tx_8 1 - 1324320 1325319 . 2 299,487 0,513 -chrIV 1324320 1325319 HC_gene_2168_tx_9 1 - 1324320 1325319 . 2 345,352 0,648 -chrIV 1324320 1325319 HC_gene_2168_tx_10 1 - 1324320 1325319 . 2 623,138 0,862 -chrIV 1324320 1325319 HC_gene_2168_tx_11 1 - 1324320 1325319 . 2 438,487 0,513 -chrIV 1324320 1325319 HC_gene_2168_tx_12 1 - 1324320 1325319 . 2 615,321 0,679 -chrIV 1324688 1325319 HC_gene_2168_tx_13 3 - 1324688 1325319 . 1 632 0 -chrIV 1324789 1325206 HC_gene_2168_tx_15 1 - 1324789 1325206 . 1 418 0 -chrIV 1324789 1325319 HC_gene_2168_tx_14 1 - 1324789 1325319 . 1 531 0 -chrIV 1325443 1327932 HC_gene_2169_tx_1 2 - 1325443 1327932 . 1 2490 0 -chrIV 1325443 1328342 HC_gene_2169_tx_2 1 - 1325443 1328342 . 1 2900 0 -chrIV 1325443 1328528 HC_gene_2169_tx_3 10 - 1325443 1328528 . 1 3086 0 -chrIV 1325443 1328528 HC_gene_2169_tx_4 1 - 1325443 1328528 . 2 445,2549 0,537 -chrIV 1325443 1328528 HC_gene_2169_tx_5 1 - 1325443 1328528 . 2 2178,546 0,2540 -chrIV 1327295 1327932 HC_gene_2169_tx_6 1 - 1327295 1327932 . 1 638 0 -chrIV 1327295 1328342 HC_gene_2169_tx_7 1 - 1327295 1328342 . 1 1048 0 -chrIV 1327295 1328528 HC_gene_2169_tx_8 2 - 1327295 1328528 . 1 1234 0 -chrIV 1328762 1330236 HC_gene_1568_tx_1 4 + 1328762 1330236 . 1 1475 0 -chrIV 1328762 1330237 HC_gene_1568_tx_2 1 + 1328762 1330237 . 1 1476 0 -chrIV 1328762 1330241 HC_gene_1568_tx_3 4 + 1328762 1330241 . 1 1480 0 -chrIV 1328762 1330242 HC_gene_1568_tx_4 11 + 1328762 1330242 . 1 1481 0 -chrIV 1328762 1330243 HC_gene_1568_tx_5 8 + 1328762 1330243 . 1 1482 0 -chrIV 1328762 1330244 HC_gene_1568_tx_6 2 + 1328762 1330244 . 1 1483 0 -chrIV 1328762 1330245 HC_gene_1568_tx_7 6 + 1328762 1330245 . 1 1484 0 -chrIV 1328762 1330246 HC_gene_1568_tx_8 2 + 1328762 1330246 . 1 1485 0 -chrIV 1328762 1330248 HC_gene_1568_tx_9 2 + 1328762 1330248 . 1 1487 0 -chrIV 1328762 1330249 HC_gene_1568_tx_10 8 + 1328762 1330249 . 1 1488 0 -chrIV 1328762 1330250 HC_gene_1568_tx_11 1 + 1328762 1330250 . 1 1489 0 -chrIV 1328762 1330251 HC_gene_1568_tx_12 2 + 1328762 1330251 . 1 1490 0 -chrIV 1328762 1330252 HC_gene_1568_tx_13 1 + 1328762 1330252 . 1 1491 0 -chrIV 1328762 1330256 HC_gene_1568_tx_14 1 + 1328762 1330256 . 1 1495 0 -chrIV 1328762 1330258 HC_gene_1568_tx_15 14 + 1328762 1330258 . 1 1497 0 -chrIV 1328762 1330259 HC_gene_1568_tx_16 16 + 1328762 1330259 . 1 1498 0 -chrIV 1328762 1330260 HC_gene_1568_tx_17 5 + 1328762 1330260 . 1 1499 0 -chrIV 1328762 1330262 HC_gene_1568_tx_18 1 + 1328762 1330262 . 1 1501 0 -chrIV 1328762 1330265 HC_gene_1568_tx_19 13 + 1328762 1330265 . 1 1504 0 -chrIV 1328762 1330266 HC_gene_1568_tx_20 4 + 1328762 1330266 . 1 1505 0 -chrIV 1328762 1330267 HC_gene_1568_tx_21 1 + 1328762 1330267 . 1 1506 0 -chrIV 1328762 1330268 HC_gene_1568_tx_22 3 + 1328762 1330268 . 1 1507 0 -chrIV 1328762 1330269 HC_gene_1568_tx_23 3 + 1328762 1330269 . 1 1508 0 -chrIV 1328762 1330269 HC_gene_1568_tx_24 1 + 1328762 1330269 . 2 916,477 0,1031 -chrIV 1328762 1330270 HC_gene_1568_tx_25 4 + 1328762 1330270 . 1 1509 0 -chrIV 1328762 1330271 HC_gene_1568_tx_26 2 + 1328762 1330271 . 1 1510 0 -chrIV 1328762 1330272 HC_gene_1568_tx_27 1 + 1328762 1330272 . 1 1511 0 -chrIV 1328762 1330273 HC_gene_1568_tx_28 1 + 1328762 1330273 . 1 1512 0 -chrIV 1328762 1330275 HC_gene_1568_tx_29 7 + 1328762 1330275 . 1 1514 0 -chrIV 1328762 1330278 HC_gene_1568_tx_30 8 + 1328762 1330278 . 1 1517 0 -chrIV 1328762 1330282 HC_gene_1568_tx_31 2 + 1328762 1330282 . 1 1521 0 -chrIV 1328762 1330283 HC_gene_1568_tx_32 1 + 1328762 1330283 . 1 1522 0 -chrIV 1328762 1330284 HC_gene_1568_tx_33 1 + 1328762 1330284 . 1 1523 0 -chrIV 1328762 1330285 HC_gene_1568_tx_34 2 + 1328762 1330285 . 1 1524 0 -chrIV 1328762 1330287 HC_gene_1568_tx_35 1 + 1328762 1330287 . 1 1526 0 -chrIV 1328762 1330294 HC_gene_1568_tx_36 1 + 1328762 1330294 . 1 1533 0 -chrIV 1328762 1330297 HC_gene_1568_tx_37 2 + 1328762 1330297 . 1 1536 0 -chrIV 1328762 1330300 HC_gene_1568_tx_38 1 + 1328762 1330300 . 1 1539 0 -chrIV 1328762 1330302 HC_gene_1568_tx_39 1 + 1328762 1330302 . 1 1541 0 -chrIV 1328762 1330306 HC_gene_1568_tx_40 2 + 1328762 1330306 . 1 1545 0 -chrIV 1328762 1330311 HC_gene_1568_tx_41 3 + 1328762 1330311 . 1 1550 0 -chrIV 1328762 1330312 HC_gene_1568_tx_42 3 + 1328762 1330312 . 1 1551 0 -chrIV 1328762 1330313 HC_gene_1568_tx_43 1 + 1328762 1330313 . 1 1552 0 -chrIV 1328762 1330314 HC_gene_1568_tx_44 1 + 1328762 1330314 . 1 1553 0 -chrIV 1328762 1330317 HC_gene_1568_tx_45 1 + 1328762 1330317 . 1 1556 0 -chrIV 1328762 1330318 HC_gene_1568_tx_46 1 + 1328762 1330318 . 1 1557 0 -chrIV 1328762 1330319 HC_gene_1568_tx_47 1 + 1328762 1330319 . 2 874,632 0,926 -chrIV 1328762 1330320 HC_gene_1568_tx_48 2 + 1328762 1330320 . 1 1559 0 -chrIV 1328762 1330323 HC_gene_1568_tx_49 4 + 1328762 1330323 . 1 1562 0 -chrIV 1328762 1330324 HC_gene_1568_tx_50 1 + 1328762 1330324 . 2 285,1229 0,334 -chrIV 1328762 1330326 HC_gene_1568_tx_51 1 + 1328762 1330326 . 1 1565 0 -chrIV 1328762 1330330 HC_gene_1568_tx_52 2 + 1328762 1330330 . 1 1569 0 -chrIV 1328762 1330331 HC_gene_1568_tx_53 4 + 1328762 1330331 . 1 1570 0 -chrIV 1328762 1330332 HC_gene_1568_tx_54 1 + 1328762 1330332 . 1 1571 0 -chrIV 1328762 1330335 HC_gene_1568_tx_55 1 + 1328762 1330335 . 1 1574 0 -chrIV 1328762 1330414 HC_gene_1568_tx_56 61 + 1328762 1330414 . 1 1653 0 -chrIV 1328762 1330414 HC_gene_1568_tx_57 1 + 1328762 1330414 . 2 1319,233 0,1420 -chrIV 1328762 1330582 HC_gene_1568_tx_58 4 + 1328762 1330582 . 1 1821 0 -chrIV 1328762 1330738 HC_gene_1568_tx_59 7 + 1328762 1330738 . 1 1977 0 -chrIV 1328762 1330967 HC_gene_1568_tx_60 1 + 1328762 1330967 . 1 2206 0 -chrIV 1328762 1330967 HC_gene_1568_tx_61 1 + 1328762 1330967 . 2 1054,1041 0,1165 -chrIV 1328909 1330249 HC_gene_1568_tx_62 2 + 1328909 1330249 . 1 1341 0 -chrIV 1328909 1330257 HC_gene_1568_tx_63 1 + 1328909 1330257 . 1 1349 0 -chrIV 1328909 1330259 HC_gene_1568_tx_64 1 + 1328909 1330259 . 1 1351 0 -chrIV 1328909 1330266 HC_gene_1568_tx_65 1 + 1328909 1330266 . 1 1358 0 -chrIV 1328909 1330270 HC_gene_1568_tx_66 1 + 1328909 1330270 . 1 1362 0 -chrIV 1328909 1330282 HC_gene_1568_tx_67 1 + 1328909 1330282 . 1 1374 0 -chrIV 1328909 1330323 HC_gene_1568_tx_68 1 + 1328909 1330323 . 1 1415 0 -chrIV 1328909 1330331 HC_gene_1568_tx_69 1 + 1328909 1330331 . 1 1423 0 -chrIV 1328909 1330414 HC_gene_1568_tx_70 1 + 1328909 1330414 . 2 727,565 0,941 -chrIV 1328909 1330414 HC_gene_1568_tx_71 2 + 1328909 1330414 . 1 1506 0 -chrIV 1328909 1330582 HC_gene_1568_tx_72 1 + 1328909 1330582 . 1 1674 0 -chrIV 1328909 1330738 HC_gene_1568_tx_73 1 + 1328909 1330738 . 1 1830 0 -chrIV 1329003 1330241 HC_gene_1568_tx_74 2 + 1329003 1330241 . 1 1239 0 -chrIV 1329003 1330242 HC_gene_1568_tx_75 1 + 1329003 1330242 . 1 1240 0 -chrIV 1329003 1330243 HC_gene_1568_tx_76 1 + 1329003 1330243 . 1 1241 0 -chrIV 1329003 1330244 HC_gene_1568_tx_77 1 + 1329003 1330244 . 1 1242 0 -chrIV 1329003 1330245 HC_gene_1568_tx_78 1 + 1329003 1330245 . 1 1243 0 -chrIV 1329003 1330249 HC_gene_1568_tx_79 2 + 1329003 1330249 . 1 1247 0 -chrIV 1329003 1330258 HC_gene_1568_tx_80 2 + 1329003 1330258 . 1 1256 0 -chrIV 1329003 1330259 HC_gene_1568_tx_81 4 + 1329003 1330259 . 1 1257 0 -chrIV 1329003 1330260 HC_gene_1568_tx_82 5 + 1329003 1330260 . 1 1258 0 -chrIV 1329003 1330260 HC_gene_1568_tx_83 1 + 1329003 1330260 . 2 540,506 0,752 -chrIV 1329003 1330262 HC_gene_1568_tx_84 1 + 1329003 1330262 . 1 1260 0 -chrIV 1329003 1330265 HC_gene_1568_tx_85 4 + 1329003 1330265 . 1 1263 0 -chrIV 1329003 1330266 HC_gene_1568_tx_86 1 + 1329003 1330266 . 1 1264 0 -chrIV 1329003 1330268 HC_gene_1568_tx_87 1 + 1329003 1330268 . 1 1266 0 -chrIV 1329003 1330269 HC_gene_1568_tx_88 1 + 1329003 1330269 . 1 1267 0 -chrIV 1329003 1330272 HC_gene_1568_tx_89 1 + 1329003 1330272 . 1 1270 0 -chrIV 1329003 1330273 HC_gene_1568_tx_90 1 + 1329003 1330273 . 1 1271 0 -chrIV 1329003 1330274 HC_gene_1568_tx_91 1 + 1329003 1330274 . 1 1272 0 -chrIV 1329003 1330275 HC_gene_1568_tx_92 2 + 1329003 1330275 . 1 1273 0 -chrIV 1329003 1330278 HC_gene_1568_tx_93 5 + 1329003 1330278 . 1 1276 0 -chrIV 1329003 1330286 HC_gene_1568_tx_94 2 + 1329003 1330286 . 1 1284 0 -chrIV 1329003 1330288 HC_gene_1568_tx_95 1 + 1329003 1330288 . 1 1286 0 -chrIV 1329003 1330306 HC_gene_1568_tx_96 1 + 1329003 1330306 . 1 1304 0 -chrIV 1329003 1330319 HC_gene_1568_tx_97 2 + 1329003 1330319 . 1 1317 0 -chrIV 1329003 1330320 HC_gene_1568_tx_98 1 + 1329003 1330320 . 1 1318 0 -chrIV 1329003 1330325 HC_gene_1568_tx_99 2 + 1329003 1330325 . 1 1323 0 -chrIV 1329003 1330330 HC_gene_1568_tx_100 1 + 1329003 1330330 . 1 1328 0 -chrIV 1329003 1330331 HC_gene_1568_tx_101 2 + 1329003 1330331 . 1 1329 0 -chrIV 1329003 1330414 HC_gene_1568_tx_102 15 + 1329003 1330414 . 1 1412 0 -chrIV 1329003 1330414 HC_gene_1568_tx_103 1 + 1329003 1330414 . 2 517,374 0,1038 -chrIV 1329003 1330582 HC_gene_1568_tx_104 1 + 1329003 1330582 . 1 1580 0 -chrIV 1329003 1330738 HC_gene_1568_tx_105 3 + 1329003 1330738 . 1 1736 0 -chrIV 1329141 1330241 HC_gene_1568_tx_106 1 + 1329141 1330241 . 1 1101 0 -chrIV 1329141 1330242 HC_gene_1568_tx_107 1 + 1329141 1330242 . 1 1102 0 -chrIV 1329141 1330243 HC_gene_1568_tx_108 3 + 1329141 1330243 . 1 1103 0 -chrIV 1329141 1330244 HC_gene_1568_tx_109 1 + 1329141 1330244 . 1 1104 0 -chrIV 1329141 1330245 HC_gene_1568_tx_110 1 + 1329141 1330245 . 1 1105 0 -chrIV 1329141 1330252 HC_gene_1568_tx_111 1 + 1329141 1330252 . 1 1112 0 -chrIV 1329141 1330254 HC_gene_1568_tx_112 1 + 1329141 1330254 . 1 1114 0 -chrIV 1329141 1330258 HC_gene_1568_tx_113 2 + 1329141 1330258 . 1 1118 0 -chrIV 1329141 1330259 HC_gene_1568_tx_114 3 + 1329141 1330259 . 1 1119 0 -chrIV 1329141 1330260 HC_gene_1568_tx_115 3 + 1329141 1330260 . 1 1120 0 -chrIV 1329141 1330263 HC_gene_1568_tx_116 1 + 1329141 1330263 . 1 1123 0 -chrIV 1329141 1330265 HC_gene_1568_tx_117 1 + 1329141 1330265 . 1 1125 0 -chrIV 1329141 1330283 HC_gene_1568_tx_118 1 + 1329141 1330283 . 1 1143 0 -chrIV 1329141 1330289 HC_gene_1568_tx_119 1 + 1329141 1330289 . 1 1149 0 -chrIV 1329141 1330296 HC_gene_1568_tx_120 1 + 1329141 1330296 . 1 1156 0 -chrIV 1329141 1330302 HC_gene_1568_tx_121 1 + 1329141 1330302 . 1 1162 0 -chrIV 1329141 1330332 HC_gene_1568_tx_122 1 + 1329141 1330332 . 1 1192 0 -chrIV 1329141 1330414 HC_gene_1568_tx_123 8 + 1329141 1330414 . 1 1274 0 -chrIV 1329141 1330414 HC_gene_1568_tx_124 1 + 1329141 1330414 . 2 321,810 0,464 -chrIV 1329141 1330738 HC_gene_1568_tx_125 1 + 1329141 1330738 . 1 1598 0 -chrIV 1329707 1330236 HC_gene_1568_tx_126 4 + 1329707 1330236 . 1 530 0 -chrIV 1329707 1330241 HC_gene_1568_tx_127 2 + 1329707 1330241 . 1 535 0 -chrIV 1329707 1330242 HC_gene_1568_tx_128 6 + 1329707 1330242 . 1 536 0 -chrIV 1329707 1330242 HC_gene_1568_tx_129 1 + 1329707 1330242 . 2 170,238 0,298 -chrIV 1329707 1330244 HC_gene_1568_tx_130 2 + 1329707 1330244 . 1 538 0 -chrIV 1329707 1330245 HC_gene_1568_tx_131 4 + 1329707 1330245 . 1 539 0 -chrIV 1329707 1330249 HC_gene_1568_tx_132 4 + 1329707 1330249 . 1 543 0 -chrIV 1329707 1330250 HC_gene_1568_tx_133 1 + 1329707 1330250 . 1 544 0 -chrIV 1329707 1330252 HC_gene_1568_tx_134 1 + 1329707 1330252 . 1 546 0 -chrIV 1329707 1330253 HC_gene_1568_tx_135 1 + 1329707 1330253 . 1 547 0 -chrIV 1329707 1330254 HC_gene_1568_tx_136 2 + 1329707 1330254 . 1 548 0 -chrIV 1329707 1330258 HC_gene_1568_tx_137 6 + 1329707 1330258 . 1 552 0 -chrIV 1329707 1330259 HC_gene_1568_tx_138 13 + 1329707 1330259 . 1 553 0 -chrIV 1329707 1330260 HC_gene_1568_tx_139 2 + 1329707 1330260 . 1 554 0 -chrIV 1329707 1330265 HC_gene_1568_tx_140 9 + 1329707 1330265 . 1 559 0 -chrIV 1329707 1330265 HC_gene_1568_tx_141 1 + 1329707 1330265 . 2 36,433 0,126 -chrIV 1329707 1330266 HC_gene_1568_tx_142 1 + 1329707 1330266 . 1 560 0 -chrIV 1329707 1330267 HC_gene_1568_tx_143 1 + 1329707 1330267 . 1 561 0 -chrIV 1329707 1330268 HC_gene_1568_tx_144 1 + 1329707 1330268 . 1 562 0 -chrIV 1329707 1330270 HC_gene_1568_tx_145 1 + 1329707 1330270 . 1 564 0 -chrIV 1329707 1330271 HC_gene_1568_tx_146 4 + 1329707 1330271 . 1 565 0 -chrIV 1329707 1330272 HC_gene_1568_tx_147 6 + 1329707 1330272 . 1 566 0 -chrIV 1329707 1330273 HC_gene_1568_tx_148 1 + 1329707 1330273 . 1 567 0 -chrIV 1329707 1330274 HC_gene_1568_tx_149 1 + 1329707 1330274 . 1 568 0 -chrIV 1329707 1330275 HC_gene_1568_tx_150 5 + 1329707 1330275 . 1 569 0 -chrIV 1329707 1330278 HC_gene_1568_tx_151 8 + 1329707 1330278 . 1 572 0 -chrIV 1329707 1330279 HC_gene_1568_tx_152 1 + 1329707 1330279 . 1 573 0 -chrIV 1329707 1330283 HC_gene_1568_tx_153 2 + 1329707 1330283 . 1 577 0 -chrIV 1329707 1330288 HC_gene_1568_tx_154 1 + 1329707 1330288 . 1 582 0 -chrIV 1329707 1330295 HC_gene_1568_tx_155 1 + 1329707 1330295 . 1 589 0 -chrIV 1329707 1330296 HC_gene_1568_tx_156 1 + 1329707 1330296 . 1 590 0 -chrIV 1329707 1330308 HC_gene_1568_tx_157 1 + 1329707 1330308 . 1 602 0 -chrIV 1329707 1330313 HC_gene_1568_tx_158 1 + 1329707 1330313 . 1 607 0 -chrIV 1329707 1330316 HC_gene_1568_tx_159 1 + 1329707 1330316 . 1 610 0 -chrIV 1329707 1330317 HC_gene_1568_tx_160 2 + 1329707 1330317 . 1 611 0 -chrIV 1329707 1330320 HC_gene_1568_tx_161 1 + 1329707 1330320 . 1 614 0 -chrIV 1329707 1330321 HC_gene_1568_tx_162 1 + 1329707 1330321 . 1 615 0 -chrIV 1329707 1330322 HC_gene_1568_tx_163 1 + 1329707 1330322 . 1 616 0 -chrIV 1329707 1330325 HC_gene_1568_tx_164 1 + 1329707 1330325 . 1 619 0 -chrIV 1329707 1330328 HC_gene_1568_tx_165 1 + 1329707 1330328 . 1 622 0 -chrIV 1329707 1330330 HC_gene_1568_tx_166 6 + 1329707 1330330 . 1 624 0 -chrIV 1329707 1330331 HC_gene_1568_tx_167 2 + 1329707 1330331 . 1 625 0 -chrIV 1329707 1330333 HC_gene_1568_tx_168 2 + 1329707 1330333 . 1 627 0 -chrIV 1329707 1330334 HC_gene_1568_tx_169 2 + 1329707 1330334 . 1 628 0 -chrIV 1329707 1330335 HC_gene_1568_tx_170 1 + 1329707 1330335 . 1 629 0 -chrIV 1329707 1330414 HC_gene_1568_tx_171 74 + 1329707 1330414 . 1 708 0 -chrIV 1329707 1330414 HC_gene_1568_tx_172 1 + 1329707 1330414 . 2 539,39 0,669 -chrIV 1329707 1330582 HC_gene_1568_tx_173 6 + 1329707 1330582 . 1 876 0 -chrIV 1329707 1330738 HC_gene_1568_tx_174 4 + 1329707 1330738 . 1 1032 0 -chrIV 1329938 1330242 HC_gene_1568_tx_175 1 + 1329938 1330242 . 1 305 0 -chrIV 1329938 1330243 HC_gene_1568_tx_176 3 + 1329938 1330243 . 1 306 0 -chrIV 1329938 1330244 HC_gene_1568_tx_177 1 + 1329938 1330244 . 1 307 0 -chrIV 1329938 1330251 HC_gene_1568_tx_178 1 + 1329938 1330251 . 1 314 0 -chrIV 1329938 1330257 HC_gene_1568_tx_179 1 + 1329938 1330257 . 1 320 0 -chrIV 1329938 1330258 HC_gene_1568_tx_180 2 + 1329938 1330258 . 1 321 0 -chrIV 1329938 1330259 HC_gene_1568_tx_181 7 + 1329938 1330259 . 1 322 0 -chrIV 1329938 1330265 HC_gene_1568_tx_182 1 + 1329938 1330265 . 1 328 0 -chrIV 1329938 1330266 HC_gene_1568_tx_183 2 + 1329938 1330266 . 1 329 0 -chrIV 1329938 1330269 HC_gene_1568_tx_184 2 + 1329938 1330269 . 1 332 0 -chrIV 1329938 1330270 HC_gene_1568_tx_185 1 + 1329938 1330270 . 1 333 0 -chrIV 1329938 1330271 HC_gene_1568_tx_186 1 + 1329938 1330271 . 1 334 0 -chrIV 1329938 1330275 HC_gene_1568_tx_187 2 + 1329938 1330275 . 1 338 0 -chrIV 1329938 1330278 HC_gene_1568_tx_188 2 + 1329938 1330278 . 1 341 0 -chrIV 1329938 1330279 HC_gene_1568_tx_189 1 + 1329938 1330279 . 1 342 0 -chrIV 1329938 1330283 HC_gene_1568_tx_190 1 + 1329938 1330283 . 1 346 0 -chrIV 1329938 1330295 HC_gene_1568_tx_191 1 + 1329938 1330295 . 1 358 0 -chrIV 1329938 1330311 HC_gene_1568_tx_192 1 + 1329938 1330311 . 1 374 0 -chrIV 1329938 1330312 HC_gene_1568_tx_193 1 + 1329938 1330312 . 1 375 0 -chrIV 1329938 1330313 HC_gene_1568_tx_194 1 + 1329938 1330313 . 1 376 0 -chrIV 1329938 1330318 HC_gene_1568_tx_195 1 + 1329938 1330318 . 1 381 0 -chrIV 1329938 1330319 HC_gene_1568_tx_196 1 + 1329938 1330319 . 1 382 0 -chrIV 1329938 1330320 HC_gene_1568_tx_197 2 + 1329938 1330320 . 1 383 0 -chrIV 1329938 1330330 HC_gene_1568_tx_198 1 + 1329938 1330330 . 1 393 0 -chrIV 1329938 1330331 HC_gene_1568_tx_199 3 + 1329938 1330331 . 1 394 0 -chrIV 1329938 1330334 HC_gene_1568_tx_200 2 + 1329938 1330334 . 1 397 0 -chrIV 1329938 1330335 HC_gene_1568_tx_201 1 + 1329938 1330335 . 1 398 0 -chrIV 1329938 1330414 HC_gene_1568_tx_202 29 + 1329938 1330414 . 1 477 0 -chrIV 1329938 1330582 HC_gene_1568_tx_203 8 + 1329938 1330582 . 1 645 0 -chrIV 1329938 1330738 HC_gene_1568_tx_204 3 + 1329938 1330738 . 1 801 0 -chrIV 1331140 1332952 HC_gene_1569_tx_1 30 + 1331140 1332952 . 1 1813 0 -chrIV 1332819 1333719 HC_gene_2170_tx_1 8 - 1332819 1333719 . 1 901 0 -chrIV 1332819 1333982 HC_gene_2170_tx_2 51 - 1332819 1333982 . 1 1164 0 -chrIV 1334575 1337114 HC_gene_1570_tx_1 1 + 1334575 1337114 . 2 1586,808 0,1732 -chrIV 1334575 1337114 HC_gene_1570_tx_2 2 + 1334575 1337114 . 1 2540 0 -chrIV 1334699 1337114 HC_gene_1570_tx_3 1 + 1334699 1337114 . 1 2416 0 -chrIV 1336271 1337124 HC_gene_2171_tx_1 2 - 1336271 1337124 . 1 854 0 -chrIV 1337285 1339091 HC_gene_1571_tx_1 1 + 1337285 1339091 . 1 1807 0 -chrIV 1337285 1339475 HC_gene_1571_tx_2 1 + 1337285 1339475 . 1 2191 0 -chrIV 1337285 1339479 HC_gene_1571_tx_3 1 + 1337285 1339479 . 2 362,1664 0,531 -chrIV 1337285 1339483 HC_gene_1571_tx_4 2 + 1337285 1339483 . 1 2199 0 -chrIV 1337285 1339487 HC_gene_1571_tx_5 1 + 1337285 1339487 . 1 2203 0 -chrIV 1337297 1339447 HC_gene_1571_tx_6 1 + 1337297 1339447 . 1 2151 0 -chrIV 1337298 1339451 HC_gene_1571_tx_7 1 + 1337298 1339451 . 1 2154 0 -chrIV 1337311 1339449 HC_gene_1571_tx_8 1 + 1337311 1339449 . 1 2139 0 -chrIV 1338200 1339443 HC_gene_2172_tx_1 2 - 1338200 1339443 . 1 1244 0 -chrIV 1338210 1339479 HC_gene_1571_tx_9 1 + 1338210 1339479 . 2 32,1169 0,101 -chrIV 1338210 1339487 HC_gene_1571_tx_10 1 + 1338210 1339487 . 1 1278 0 -chrIV 1338263 1339443 HC_gene_2172_tx_2 1 - 1338263 1339443 . 1 1181 0 -chrIV 1339435 1340828 HC_gene_1572_tx_1 3 + 1339435 1340828 . 1 1394 0 -chrIV 1339599 1340828 HC_gene_1572_tx_2 11 + 1339599 1340828 . 1 1230 0 -chrIV 1339599 1340828 HC_gene_1572_tx_3 1 + 1339599 1340828 . 2 809,185 0,1045 -chrIV 1339599 1340828 HC_gene_1572_tx_4 1 + 1339599 1340828 . 2 376,639 0,591 -chrIV 1340545 1342214 HC_gene_2173_tx_1 2 - 1340545 1342214 . 1 1670 0 -chrIV 1340695 1342214 HC_gene_2173_tx_2 2 - 1340695 1342214 . 1 1520 0 -chrIV 1340756 1342214 HC_gene_2173_tx_3 3 - 1340756 1342214 . 1 1459 0 -chrIV 1341144 1342214 HC_gene_2173_tx_4 2 - 1341144 1342214 . 1 1071 0 -chrIV 1342430 1344559 MC_gene_1573_tx_1 1 + 1342430 1344559 . 1 2130 0 -chrIV 1342784 1344343 MC_gene_1573_tx_2 1 + 1342784 1344343 . 2 305,937 0,623 -chrIV 1344208 1344558 HC_gene_2174_tx_1 2 - 1344208 1344558 . 1 351 0 -chrIV 1344208 1344682 HC_gene_2174_tx_2 7 - 1344208 1344682 . 1 475 0 -chrIV 1344208 1344988 HC_gene_2174_tx_3 27 - 1344208 1344988 . 1 781 0 -chrIV 1344208 1345212 HC_gene_2174_tx_4 106 - 1344208 1345212 . 1 1005 0 -chrIV 1344208 1345212 HC_gene_2174_tx_5 1 - 1344208 1345212 . 2 646,290 0,715 -chrIV 1344208 1345212 HC_gene_2174_tx_6 1 - 1344208 1345212 . 2 444,187 0,818 -chrIV 1344487 1344988 HC_gene_2174_tx_7 1 - 1344487 1344988 . 1 502 0 -chrIV 1344487 1345212 HC_gene_2174_tx_8 2 - 1344487 1345212 . 1 726 0 -chrIV 1345120 1345212 HC_gene_2174_tx_9 1 - 1345120 1345212 . 1 93 0 -chrIV 1345120 1349992 HC_gene_2174_tx_10 3 - 1345120 1349992 . 1 4873 0 -chrIV 1350204 1351210 HC_gene_1574_tx_1 2 + 1350204 1351210 . 1 1007 0 -chrIV 1350204 1352401 HC_gene_1574_tx_2 1 + 1350204 1352401 . 2 1210,903 0,1295 -chrIV 1350204 1352401 HC_gene_1574_tx_3 16 + 1350204 1352401 . 1 2198 0 -chrIV 1353065 1353565 HC_gene_2175_tx_1 19 - 1353065 1353565 . 1 501 0 -chrIV 1353123 1353565 HC_gene_2175_tx_2 11 - 1353123 1353565 . 1 443 0 -chrIV 1353723 1354829 LC_gene_1575_tx_1 1 + 1353723 1354829 . 1 1107 0 -chrIV 1354700 1355086 HC_gene_2176_tx_1 107 - 1354700 1355086 . 1 387 0 -chrIV 1354700 1355141 HC_gene_2176_tx_2 100 - 1354700 1355141 . 1 442 0 -chrIV 1354700 1355244 HC_gene_2176_tx_3 2180 - 1354700 1355244 . 1 545 0 -chrIV 1354700 1355578 HC_gene_2176_tx_4 106 - 1354700 1355578 . 1 879 0 -chrIV 1354700 1355578 HC_gene_2176_tx_5 15 - 1354700 1355578 . 2 537,28 0,851 -chrIV 1356028 1357350 HC_gene_1576_tx_1 6 + 1356028 1357350 . 1 1323 0 -chrIV 1356028 1357634 HC_gene_1576_tx_2 13 + 1356028 1357634 . 1 1607 0 -chrIV 1356028 1357634 HC_gene_1576_tx_3 1 + 1356028 1357634 . 2 1428,133 0,1474 -chrIV 1356556 1357634 HC_gene_1576_tx_4 5 + 1356556 1357634 . 1 1079 0 -chrIV 1357393 1358932 HC_gene_2177_tx_1 5 - 1357393 1358932 . 1 1540 0 -chrIV 1357688 1358932 HC_gene_2177_tx_2 1 - 1357688 1358932 . 1 1245 0 -chrIV 1357922 1358932 HC_gene_2177_tx_3 2 - 1357922 1358932 . 1 1011 0 -chrIV 1358683 1358932 HC_gene_2177_tx_4 1 - 1358683 1358932 . 1 250 0 -chrIV 1359164 1359414 MC_gene_2178_tx_1 1 - 1359164 1359414 . 1 251 0 -chrIV 1359191 1359499 LC_gene_1577_tx_1 1 + 1359191 1359499 . 1 309 0 -chrIV 1359268 1359466 MC_gene_2179_tx_1 1 - 1359268 1359466 . 1 199 0 -chrIV 1359895 1360917 HC_gene_1578_tx_1 25 + 1359895 1360917 . 2 67,513 0,510 -chrIV 1359895 1360917 HC_gene_1578_tx_2 2005 + 1359895 1360917 . 2 75,513 0,510 -chrIV 1359895 1360917 HC_gene_1578_tx_3 3 + 1359895 1360917 . 2 57,501 0,522 -chrIV 1359895 1360917 HC_gene_1578_tx_4 3 + 1359895 1360917 . 2 77,501 0,522 -chrIV 1359895 1360917 HC_gene_1578_tx_5 12 + 1359895 1360917 . 2 90,501 0,522 -chrIV 1359895 1360917 HC_gene_1578_tx_6 24 + 1359895 1360917 . 2 66,513 0,510 -chrIV 1359895 1360917 HC_gene_1578_tx_7 14 + 1359895 1360917 . 2 63,513 0,510 -chrIV 1359895 1360917 HC_gene_1578_tx_8 2 + 1359895 1360917 . 2 63,501 0,522 -chrIV 1359895 1360917 HC_gene_1578_tx_9 53 + 1359895 1360917 . 1 1023 0 -chrIV 1359895 1360917 HC_gene_1578_tx_10 2 + 1359895 1360917 . 2 75,539 0,484 -chrIV 1359895 1360917 HC_gene_1578_tx_11 13 + 1359895 1360917 . 2 65,513 0,510 -chrIV 1359895 1360917 HC_gene_1578_tx_12 25 + 1359895 1360917 . 2 57,517 0,506 -chrIV 1359895 1360917 HC_gene_1578_tx_13 6 + 1359895 1360917 . 2 61,513 0,510 -chrIV 1359895 1360917 HC_gene_1578_tx_14 3 + 1359895 1360917 . 2 53,513 0,510 -chrIV 1359895 1360917 HC_gene_1578_tx_15 6 + 1359895 1360917 . 2 75,505 0,518 -chrIV 1359895 1360917 HC_gene_1578_tx_16 1 + 1359895 1360917 . 2 57,487 0,536 -chrIV 1359895 1360917 HC_gene_1578_tx_17 2 + 1359895 1360917 . 2 90,497 0,526 -chrIV 1359895 1360917 HC_gene_1578_tx_18 1 + 1359895 1360917 . 2 80,501 0,522 -chrIV 1359895 1360917 HC_gene_1578_tx_19 1 + 1359895 1360917 . 2 62,513 0,510 -chrIV 1359895 1360917 HC_gene_1578_tx_20 1 + 1359895 1360917 . 2 57,513 0,510 -chrIV 1359895 1360917 HC_gene_1578_tx_21 3 + 1359895 1360917 . 2 75,544 0,479 -chrIV 1359895 1360917 HC_gene_1578_tx_22 1 + 1359895 1360917 . 2 60,513 0,510 -chrIV 1359895 1360917 HC_gene_1578_tx_23 1 + 1359895 1360917 . 2 71,497 0,526 -chrIV 1359895 1360917 HC_gene_1578_tx_24 1 + 1359895 1360917 . 2 75,496 0,527 -chrIV 1359895 1360917 HC_gene_1578_tx_25 1 + 1359895 1360917 . 2 60,501 0,522 -chrIV 1359895 1360917 HC_gene_1578_tx_26 1 + 1359895 1360917 . 2 75,503 0,520 -chrIV 1359895 1360917 HC_gene_1578_tx_27 1 + 1359895 1360917 . 2 93,484 0,539 -chrIV 1359895 1360917 HC_gene_1578_tx_28 1 + 1359895 1360917 . 2 71,491 0,532 -chrIV 1359895 1360917 HC_gene_1578_tx_29 3 + 1359895 1360917 . 2 79,501 0,522 -chrIV 1359895 1360917 HC_gene_1578_tx_30 1 + 1359895 1360917 . 2 75,538 0,485 -chrIV 1359895 1360917 HC_gene_1578_tx_31 2 + 1359895 1360917 . 2 79,513 0,510 -chrIV 1359895 1360917 HC_gene_1578_tx_32 1 + 1359895 1360917 . 2 75,493 0,530 -chrIV 1359895 1360917 HC_gene_1578_tx_33 1 + 1359895 1360917 . 3 75,414,34 0,510,989 -chrIV 1359895 1360917 HC_gene_1578_tx_34 2 + 1359895 1360917 . 2 72,501 0,522 -chrIV 1359895 1360917 HC_gene_1578_tx_35 1 + 1359895 1360917 . 2 75,486 0,537 -chrIV 1359895 1360917 HC_gene_1578_tx_36 1 + 1359895 1360917 . 2 74,501 0,522 -chrIV 1359895 1360917 HC_gene_1578_tx_37 2 + 1359895 1360917 . 2 73,501 0,522 -chrIV 1359895 1360917 HC_gene_1578_tx_38 1 + 1359895 1360917 . 2 57,434 0,589 -chrIV 1359895 1360917 HC_gene_1578_tx_39 2 + 1359895 1360917 . 2 75,479 0,544 -chrIV 1359895 1360917 HC_gene_1578_tx_40 1 + 1359895 1360917 . 2 75,502 0,521 -chrIV 1359895 1360917 HC_gene_1578_tx_41 1 + 1359895 1360917 . 2 66,501 0,522 -chrIV 1359895 1360917 HC_gene_1578_tx_42 1 + 1359895 1360917 . 2 59,501 0,522 -chrIV 1359895 1360917 HC_gene_1578_tx_43 1 + 1359895 1360917 . 2 113,459 0,564 -chrIV 1359895 1360917 HC_gene_1578_tx_44 1 + 1359895 1360917 . 2 64,513 0,510 -chrIV 1359895 1360917 HC_gene_1578_tx_45 1 + 1359895 1360917 . 2 65,517 0,506 -chrIV 1359895 1360917 HC_gene_1578_tx_46 1 + 1359895 1360917 . 2 69,501 0,522 -chrIV 1359895 1360917 HC_gene_1578_tx_47 1 + 1359895 1360917 . 2 90,485 0,538 -chrIV 1359895 1360917 HC_gene_1578_tx_48 1 + 1359895 1360917 . 3 75,401,45 0,510,978 -chrIV 1359895 1360917 HC_gene_1578_tx_49 1 + 1359895 1360917 . 2 90,459 0,564 -chrIV 1359895 1360917 HC_gene_1578_tx_50 1 + 1359895 1360917 . 3 77,164,282 0,522,741 -chrIV 1359895 1361021 HC_gene_1578_tx_51 1 + 1359895 1361021 . 1 1127 0 -chrIV 1359895 1361023 HC_gene_1578_tx_52 1 + 1359895 1361023 . 1 1129 0 -chrIV 1359895 1361023 HC_gene_1578_tx_53 1 + 1359895 1361023 . 2 75,619 0,510 -chrIV 1359895 1361025 HC_gene_1578_tx_54 1 + 1359895 1361025 . 2 75,621 0,510 -chrIV 1359895 1361026 HC_gene_1578_tx_55 1 + 1359895 1361026 . 2 75,622 0,510 -chrIV 1359895 1361027 HC_gene_1578_tx_56 2 + 1359895 1361027 . 2 75,623 0,510 -chrIV 1359895 1361028 HC_gene_1578_tx_57 3 + 1359895 1361028 . 2 75,624 0,510 -chrIV 1359895 1361030 HC_gene_1578_tx_58 1 + 1359895 1361030 . 2 75,626 0,510 -chrIV 1359895 1361040 HC_gene_1578_tx_59 1 + 1359895 1361040 . 2 75,636 0,510 -chrIV 1359895 1361041 HC_gene_1578_tx_60 1 + 1359895 1361041 . 2 75,637 0,510 -chrIV 1359895 1361042 HC_gene_1578_tx_61 1 + 1359895 1361042 . 2 75,638 0,510 -chrIV 1359895 1361046 HC_gene_1578_tx_62 1 + 1359895 1361046 . 2 75,642 0,510 -chrIV 1359895 1361049 HC_gene_1578_tx_63 1 + 1359895 1361049 . 2 75,645 0,510 -chrIV 1359895 1361056 HC_gene_1578_tx_64 1 + 1359895 1361056 . 2 75,652 0,510 -chrIV 1359911 1361043 HC_gene_1578_tx_65 1 + 1359911 1361043 . 1 1133 0 -chrIV 1360467 1360917 HC_gene_1578_tx_66 401 + 1360467 1360917 . 1 451 0 -chrIV 1360467 1361023 HC_gene_1578_tx_67 3 + 1360467 1361023 . 1 557 0 -chrIV 1360467 1361027 HC_gene_1578_tx_68 1 + 1360467 1361027 . 1 561 0 -chrIV 1360500 1361046 HC_gene_1578_tx_69 1 + 1360500 1361046 . 1 547 0 -chrIV 1360959 1362080 HC_gene_2180_tx_1 6 - 1360959 1362080 . 1 1122 0 -chrIV 1360959 1362080 HC_gene_2180_tx_2 1 - 1360959 1362080 . 2 545,527 0,595 -chrIV 1360959 1362244 HC_gene_2180_tx_3 36 - 1360959 1362244 . 1 1286 0 -chrIV 1361036 1362244 HC_gene_2180_tx_4 5 - 1361036 1362244 . 1 1209 0 -chrIV 1361040 1362338 HC_gene_1579_tx_1 2 + 1361040 1362338 . 1 1299 0 -chrIV 1362252 1364162 MC_gene_2181_tx_1 1 - 1362252 1364162 . 1 1911 0 -chrIV 1362727 1364941 HC_gene_1580_tx_1 1 + 1362727 1364941 . 1 2215 0 -chrIV 1362727 1364943 HC_gene_1580_tx_2 3 + 1362727 1364943 . 1 2217 0 -chrIV 1362727 1364947 HC_gene_1580_tx_3 1 + 1362727 1364947 . 1 2221 0 -chrIV 1362727 1364953 HC_gene_1580_tx_4 1 + 1362727 1364953 . 2 1103,1047 0,1180 -chrIV 1362727 1364997 HC_gene_1580_tx_5 1 + 1362727 1364997 . 1 2271 0 -chrIV 1362727 1365003 HC_gene_1580_tx_6 1 + 1362727 1365003 . 1 2277 0 -chrIV 1362727 1365006 HC_gene_1580_tx_7 1 + 1362727 1365006 . 1 2280 0 -chrIV 1362727 1365042 HC_gene_1580_tx_8 1 + 1362727 1365042 . 1 2316 0 -chrIV 1362727 1365046 HC_gene_1580_tx_9 1 + 1362727 1365046 . 1 2320 0 -chrIV 1362727 1365049 HC_gene_1580_tx_10 1 + 1362727 1365049 . 1 2323 0 -chrIV 1362727 1365052 HC_gene_1580_tx_11 1 + 1362727 1365052 . 1 2326 0 -chrIV 1362727 1365053 HC_gene_1580_tx_12 1 + 1362727 1365053 . 1 2327 0 -chrIV 1362727 1365054 HC_gene_1580_tx_13 3 + 1362727 1365054 . 1 2328 0 -chrIV 1362727 1365058 HC_gene_1580_tx_14 1 + 1362727 1365058 . 1 2332 0 -chrIV 1362727 1365060 HC_gene_1580_tx_15 1 + 1362727 1365060 . 1 2334 0 -chrIV 1362727 1365062 HC_gene_1580_tx_16 1 + 1362727 1365062 . 1 2336 0 -chrIV 1362727 1365065 HC_gene_1580_tx_17 1 + 1362727 1365065 . 1 2339 0 -chrIV 1362727 1365069 HC_gene_1580_tx_18 3 + 1362727 1365069 . 1 2343 0 -chrIV 1362727 1365069 HC_gene_1580_tx_19 1 + 1362727 1365069 . 2 194,2082 0,261 -chrIV 1362727 1365075 HC_gene_1580_tx_20 2 + 1362727 1365075 . 1 2349 0 -chrIV 1362727 1365076 HC_gene_1580_tx_21 1 + 1362727 1365076 . 2 1096,1136 0,1214 -chrIV 1362727 1365083 HC_gene_1580_tx_22 1 + 1362727 1365083 . 1 2357 0 -chrIV 1362727 1365086 HC_gene_1580_tx_23 1 + 1362727 1365086 . 1 2360 0 -chrIV 1362727 1365087 HC_gene_1580_tx_24 1 + 1362727 1365087 . 1 2361 0 -chrIV 1362727 1365089 HC_gene_1580_tx_25 2 + 1362727 1365089 . 1 2363 0 -chrIV 1362727 1365094 HC_gene_1580_tx_26 1 + 1362727 1365094 . 1 2368 0 -chrIV 1362755 1365301 HC_gene_1580_tx_27 1 + 1362755 1365301 . 2 768,1484 0,1063 -chrIV 1362852 1364941 HC_gene_1580_tx_28 2 + 1362852 1364941 . 1 2090 0 -chrIV 1363044 1364947 HC_gene_1580_tx_29 1 + 1363044 1364947 . 2 512,1308 0,596 -chrIV 1363044 1365035 HC_gene_1580_tx_30 1 + 1363044 1365035 . 1 1992 0 -chrIV 1363044 1365065 HC_gene_1580_tx_31 1 + 1363044 1365065 . 1 2022 0 -chrIV 1363044 1365080 HC_gene_1580_tx_32 1 + 1363044 1365080 . 1 2037 0 -chrIV 1363164 1365051 HC_gene_1580_tx_33 1 + 1363164 1365051 . 1 1888 0 -chrIV 1363164 1365088 HC_gene_1580_tx_34 1 + 1363164 1365088 . 1 1925 0 -chrIV 1363286 1365060 HC_gene_1580_tx_35 1 + 1363286 1365060 . 1 1775 0 -chrIV 1363286 1365062 HC_gene_1580_tx_36 1 + 1363286 1365062 . 1 1777 0 -chrIV 1363286 1365066 HC_gene_1580_tx_37 1 + 1363286 1365066 . 1 1781 0 -chrIV 1363451 1364450 MC_gene_2182_tx_1 1 - 1363451 1364450 . 1 1000 0 -chrIV 1363695 1365065 HC_gene_1580_tx_38 1 + 1363695 1365065 . 1 1371 0 -chrIV 1363835 1364947 HC_gene_1580_tx_39 1 + 1363835 1364947 . 1 1113 0 -chrIV 1363835 1365006 HC_gene_1580_tx_40 1 + 1363835 1365006 . 1 1172 0 -chrIV 1363835 1365035 HC_gene_1580_tx_41 2 + 1363835 1365035 . 1 1201 0 -chrIV 1363835 1365063 HC_gene_1580_tx_42 1 + 1363835 1365063 . 1 1229 0 -chrIV 1363835 1365088 HC_gene_1580_tx_43 1 + 1363835 1365088 . 1 1254 0 -chrIV 1363949 1365060 HC_gene_1580_tx_44 1 + 1363949 1365060 . 1 1112 0 -chrIV 1364119 1364941 HC_gene_1580_tx_45 2 + 1364119 1364941 . 1 823 0 -chrIV 1364119 1364949 HC_gene_1580_tx_46 1 + 1364119 1364949 . 1 831 0 -chrIV 1364119 1364997 HC_gene_1580_tx_47 1 + 1364119 1364997 . 1 879 0 -chrIV 1364119 1365003 HC_gene_1580_tx_48 1 + 1364119 1365003 . 1 885 0 -chrIV 1364119 1365009 HC_gene_1580_tx_49 1 + 1364119 1365009 . 1 891 0 -chrIV 1364119 1365048 HC_gene_1580_tx_50 1 + 1364119 1365048 . 1 930 0 -chrIV 1364119 1365052 HC_gene_1580_tx_51 1 + 1364119 1365052 . 1 934 0 -chrIV 1364119 1365054 HC_gene_1580_tx_52 1 + 1364119 1365054 . 1 936 0 -chrIV 1364119 1365069 HC_gene_1580_tx_53 1 + 1364119 1365069 . 1 951 0 -chrIV 1364119 1365073 HC_gene_1580_tx_54 1 + 1364119 1365073 . 1 955 0 -chrIV 1364119 1365081 HC_gene_1580_tx_55 2 + 1364119 1365081 . 1 963 0 -chrIV 1364119 1365086 HC_gene_1580_tx_56 1 + 1364119 1365086 . 1 968 0 -chrIV 1364119 1365088 HC_gene_1580_tx_57 1 + 1364119 1365088 . 1 970 0 -chrIV 1364119 1365093 HC_gene_1580_tx_58 1 + 1364119 1365093 . 1 975 0 -chrIV 1364273 1364947 HC_gene_1580_tx_59 1 + 1364273 1364947 . 1 675 0 -chrIV 1364273 1364953 HC_gene_1580_tx_60 1 + 1364273 1364953 . 1 681 0 -chrIV 1364273 1365083 HC_gene_1580_tx_61 1 + 1364273 1365083 . 1 811 0 -chrIV 1364273 1365301 HC_gene_1580_tx_74 1 + 1364273 1365301 . 1 1029 0 -chrIV 1364342 1364939 HC_gene_1580_tx_62 1 + 1364342 1364939 . 1 598 0 -chrIV 1364342 1364941 HC_gene_1580_tx_63 1 + 1364342 1364941 . 1 600 0 -chrIV 1364342 1364943 HC_gene_1580_tx_64 2 + 1364342 1364943 . 1 602 0 -chrIV 1364342 1364947 HC_gene_1580_tx_65 2 + 1364342 1364947 . 1 606 0 -chrIV 1364342 1365042 HC_gene_1580_tx_66 1 + 1364342 1365042 . 1 701 0 -chrIV 1364342 1365053 HC_gene_1580_tx_67 1 + 1364342 1365053 . 1 712 0 -chrIV 1364342 1365069 HC_gene_1580_tx_68 1 + 1364342 1365069 . 1 728 0 -chrIV 1364342 1365080 HC_gene_1580_tx_69 1 + 1364342 1365080 . 1 739 0 -chrIV 1364342 1365086 HC_gene_1580_tx_70 2 + 1364342 1365086 . 1 745 0 -chrIV 1364342 1365092 HC_gene_1580_tx_71 1 + 1364342 1365092 . 1 751 0 -chrIV 1364342 1365093 HC_gene_1580_tx_72 3 + 1364342 1365093 . 1 752 0 -chrIV 1364342 1365094 HC_gene_1580_tx_73 1 + 1364342 1365094 . 1 753 0 -chrIV 1364550 1364938 HC_gene_1580_tx_75 1 + 1364550 1364938 . 1 389 0 -chrIV 1364550 1364939 HC_gene_1580_tx_76 1 + 1364550 1364939 . 1 390 0 -chrIV 1364550 1364943 HC_gene_1580_tx_77 1 + 1364550 1364943 . 1 394 0 -chrIV 1364550 1364953 HC_gene_1580_tx_78 1 + 1364550 1364953 . 1 404 0 -chrIV 1364550 1364982 HC_gene_1580_tx_79 1 + 1364550 1364982 . 1 433 0 -chrIV 1364550 1365003 HC_gene_1580_tx_80 1 + 1364550 1365003 . 1 454 0 -chrIV 1364550 1365035 HC_gene_1580_tx_81 1 + 1364550 1365035 . 1 486 0 -chrIV 1364550 1365049 HC_gene_1580_tx_82 1 + 1364550 1365049 . 1 500 0 -chrIV 1364550 1365063 HC_gene_1580_tx_83 1 + 1364550 1365063 . 1 514 0 -chrIV 1364550 1365067 HC_gene_1580_tx_84 1 + 1364550 1365067 . 1 518 0 -chrIV 1364550 1365069 HC_gene_1580_tx_85 2 + 1364550 1365069 . 1 520 0 -chrIV 1364550 1365075 HC_gene_1580_tx_86 1 + 1364550 1365075 . 1 526 0 -chrIV 1364550 1365085 HC_gene_1580_tx_87 1 + 1364550 1365085 . 1 536 0 -chrIV 1364550 1365086 HC_gene_1580_tx_88 2 + 1364550 1365086 . 1 537 0 -chrIV 1364550 1365087 HC_gene_1580_tx_89 1 + 1364550 1365087 . 1 538 0 -chrIV 1364550 1365088 HC_gene_1580_tx_90 1 + 1364550 1365088 . 1 539 0 -chrIV 1364550 1365092 HC_gene_1580_tx_91 1 + 1364550 1365092 . 1 543 0 -chrIV 1364550 1365093 HC_gene_1580_tx_92 1 + 1364550 1365093 . 1 544 0 -chrIV 1364763 1364947 HC_gene_1580_tx_93 1 + 1364763 1364947 . 1 185 0 -chrIV 1364763 1365003 HC_gene_1580_tx_94 1 + 1364763 1365003 . 1 241 0 -chrIV 1364763 1365053 HC_gene_1580_tx_95 1 + 1364763 1365053 . 1 291 0 -chrIV 1364763 1365054 HC_gene_1580_tx_96 2 + 1364763 1365054 . 1 292 0 -chrIV 1364763 1365066 HC_gene_1580_tx_97 1 + 1364763 1365066 . 1 304 0 -chrIV 1364763 1365067 HC_gene_1580_tx_98 1 + 1364763 1365067 . 1 305 0 -chrIV 1364763 1365069 HC_gene_1580_tx_99 1 + 1364763 1365069 . 1 307 0 -chrIV 1364763 1365086 HC_gene_1580_tx_100 2 + 1364763 1365086 . 1 324 0 -chrIV 1364763 1365094 HC_gene_1580_tx_101 2 + 1364763 1365094 . 1 332 0 -chrIV 1364852 1365390 HC_gene_2183_tx_1 5 - 1364852 1365390 . 1 539 0 -chrIV 1364982 1365390 HC_gene_2183_tx_2 33 - 1364982 1365390 . 1 409 0 -chrIV 1364982 1365731 HC_gene_2183_tx_3 43 - 1364982 1365731 . 1 750 0 -chrIV 1365618 1366270 LC_gene_1581_tx_1 1 + 1365618 1366270 . 1 653 0 -chrIV 1366159 1366476 HC_gene_2184_tx_1 72 - 1366159 1366476 . 1 318 0 -chrIV 1366159 1366735 HC_gene_2184_tx_2 45 - 1366159 1366735 . 1 577 0 -chrIV 1366159 1366844 HC_gene_2184_tx_3 602 - 1366159 1366844 . 1 686 0 -chrIV 1367441 1369493 HC_gene_1582_tx_1 38 + 1367441 1369493 . 1 2053 0 -chrIV 1367441 1369493 HC_gene_1582_tx_2 1 + 1367441 1369493 . 2 876,1079 0,974 -chrIV 1369012 1369493 HC_gene_1582_tx_3 18 + 1369012 1369493 . 1 482 0 -chrIV 1369675 1373066 HC_gene_1583_tx_1 1 + 1369675 1373066 . 1 3392 0 -chrIV 1371812 1379689 HC_gene_1584_tx_1 1 + 1371812 1379689 . 1 7878 0 -chrIV 1375501 1379689 HC_gene_1584_tx_2 1 + 1375501 1379689 . 1 4189 0 -chrIV 1376064 1379689 HC_gene_1584_tx_3 1 + 1376064 1379689 . 1 3626 0 -chrIV 1376423 1379689 HC_gene_1584_tx_4 2 + 1376423 1379689 . 1 3267 0 -chrIV 1376645 1379689 HC_gene_1584_tx_5 3 + 1376645 1379689 . 1 3045 0 -chrIV 1377216 1379689 HC_gene_1584_tx_6 1 + 1377216 1379689 . 2 1181,1209 0,1265 -chrIV 1377216 1379689 HC_gene_1584_tx_7 1 + 1377216 1379689 . 1 2474 0 -chrIV 1378653 1379689 HC_gene_1584_tx_8 3 + 1378653 1379689 . 1 1037 0 -chrIV 1378653 1379689 HC_gene_1584_tx_9 1 + 1378653 1379689 . 2 362,361 0,676 -chrIV 1379048 1379689 HC_gene_1585_tx_1 6 + 1379048 1379689 . 1 642 0 -chrIV 1379048 1379763 HC_gene_1585_tx_2 1 + 1379048 1379763 . 1 716 0 -chrIV 1379048 1379763 HC_gene_1585_tx_3 1 + 1379048 1379763 . 2 493,158 0,558 -chrIV 1379228 1379689 HC_gene_1585_tx_4 14 + 1379228 1379689 . 1 462 0 -chrIV 1379228 1379763 HC_gene_1585_tx_5 4 + 1379228 1379763 . 1 536 0 -chrIV 1379879 1381515 HC_gene_2185_tx_1 3 - 1379879 1381515 . 1 1637 0 -chrIV 1379879 1381780 HC_gene_2185_tx_2 1 - 1379879 1381780 . 1 1902 0 -chrIV 1379879 1381843 HC_gene_2185_tx_3 2 - 1379879 1381843 . 1 1965 0 -chrIV 1379879 1382093 HC_gene_2185_tx_4 12 - 1379879 1382093 . 1 2215 0 -chrIV 1379879 1382093 HC_gene_2185_tx_5 1 - 1379879 1382093 . 2 582,1552 0,663 -chrIV 1379879 1382093 HC_gene_2185_tx_6 1 - 1379879 1382093 . 2 967,1178 0,1037 -chrIV 1379930 1381515 HC_gene_2185_tx_7 1 - 1379930 1381515 . 1 1586 0 -chrIV 1379930 1382093 HC_gene_2185_tx_8 4 - 1379930 1382093 . 1 2164 0 -chrIV 1380360 1382093 HC_gene_2185_tx_9 1 - 1380360 1382093 . 1 1734 0 -chrIV 1382209 1383540 HC_gene_2186_tx_1 37 - 1382209 1383540 . 1 1332 0 -chrIV 1382209 1383540 HC_gene_2186_tx_2 1 - 1382209 1383540 . 2 580,643 0,689 -chrIV 1382223 1383017 MC_gene_1586_tx_1 1 + 1382223 1383017 . 1 795 0 -chrIV 1383682 1384870 HC_gene_1587_tx_1 31 + 1383682 1384870 . 1 1189 0 -chrIV 1383682 1384870 HC_gene_1587_tx_2 1 + 1383682 1384870 . 2 692,415 0,774 -chrIV 1384201 1384870 HC_gene_1587_tx_3 2 + 1384201 1384870 . 1 670 0 -chrIV 1384284 1384870 HC_gene_1587_tx_4 6 + 1384284 1384870 . 1 587 0 -chrIV 1385152 1385433 HC_gene_1588_tx_1 3 + 1385152 1385433 . 1 282 0 -chrIV 1385419 1385785 HC_gene_2187_tx_1 52 - 1385419 1385785 . 1 367 0 -chrIV 1386018 1386640 HC_gene_1589_tx_1 75 + 1386018 1386640 . 1 623 0 -chrIV 1386157 1386640 HC_gene_1589_tx_2 9 + 1386157 1386640 . 1 484 0 -chrIV 1386770 1388580 HC_gene_1590_tx_1 29 + 1386770 1388580 . 1 1811 0 -chrIV 1386770 1388580 HC_gene_1590_tx_2 1 + 1386770 1388580 . 2 952,807 0,1004 -chrIV 1386770 1388580 HC_gene_1590_tx_3 1 + 1386770 1388580 . 2 972,742 0,1069 -chrIV 1386770 1388580 HC_gene_1590_tx_4 1 + 1386770 1388580 . 2 884,789 0,1022 -chrIV 1387792 1388580 HC_gene_1590_tx_5 8 + 1387792 1388580 . 1 789 0 -chrIV 1388770 1393357 HC_gene_1591_tx_1 1 + 1388770 1393357 . 2 1354,3173 0,1415 -chrIV 1388770 1393357 HC_gene_1591_tx_2 4 + 1388770 1393357 . 1 4588 0 -chrIV 1391795 1393357 HC_gene_1591_tx_3 3 + 1391795 1393357 . 1 1563 0 -chrIV 1392850 1393357 HC_gene_1591_tx_4 5 + 1392850 1393357 . 1 508 0 -chrIV 1393169 1394415 HC_gene_2188_tx_1 8 - 1393169 1394415 . 1 1247 0 -chrIV 1393169 1394598 HC_gene_2188_tx_2 37 - 1393169 1394598 . 1 1430 0 -chrIV 1393169 1394598 HC_gene_2188_tx_3 1 - 1393169 1394598 . 2 177,1205 0,225 -chrIV 1393336 1394598 HC_gene_2188_tx_4 1 - 1393336 1394598 . 1 1263 0 -chrIV 1393430 1394598 HC_gene_2188_tx_5 2 - 1393430 1394598 . 1 1169 0 -chrIV 1393432 1394415 HC_gene_2188_tx_6 1 - 1393432 1394415 . 1 984 0 -chrIV 1393434 1394598 HC_gene_2188_tx_7 1 - 1393434 1394598 . 1 1165 0 -chrIV 1393445 1394598 HC_gene_2188_tx_8 1 - 1393445 1394598 . 1 1154 0 -chrIV 1395006 1397980 HC_gene_1592_tx_1 2 + 1395006 1397980 . 1 2975 0 -chrIV 1395006 1398075 HC_gene_1592_tx_2 3 + 1395006 1398075 . 1 3070 0 -chrIV 1395006 1398075 HC_gene_1592_tx_3 1 + 1395006 1398075 . 3 114,443,2038 0,494,1032 -chrIV 1395006 1398240 HC_gene_1592_tx_4 1 + 1395006 1398240 . 1 3235 0 -chrIV 1396792 1398221 HC_gene_2189_tx_1 1 - 1396792 1398221 . 1 1430 0 -chrIV 1396792 1398795 HC_gene_2189_tx_2 1 - 1396792 1398795 . 1 2004 0 -chrIV 1397805 1398221 HC_gene_2189_tx_3 2 - 1397805 1398221 . 1 417 0 -chrIV 1397805 1398487 HC_gene_2189_tx_4 1 - 1397805 1398487 . 1 683 0 -chrIV 1397805 1398795 HC_gene_2189_tx_6 13 - 1397805 1398795 . 1 991 0 -chrIV 1397902 1398221 HC_gene_2189_tx_8 15 - 1397902 1398221 . 1 320 0 -chrIV 1397902 1398487 HC_gene_2189_tx_5 11 - 1397902 1398487 . 1 586 0 -chrIV 1397902 1398795 HC_gene_2189_tx_7 90 - 1397902 1398795 . 1 894 0 -chrIV 1399026 1399594 HC_gene_1593_tx_1 3 + 1399026 1399594 . 1 569 0 -chrIV 1399026 1399595 HC_gene_1593_tx_2 1 + 1399026 1399595 . 1 570 0 -chrIV 1399026 1399597 HC_gene_1593_tx_3 1 + 1399026 1399597 . 1 572 0 -chrIV 1399026 1399598 HC_gene_1593_tx_4 2 + 1399026 1399598 . 1 573 0 -chrIV 1399026 1399599 HC_gene_1593_tx_5 2 + 1399026 1399599 . 1 574 0 -chrIV 1399026 1399600 HC_gene_1593_tx_6 1 + 1399026 1399600 . 1 575 0 -chrIV 1399026 1399604 HC_gene_1593_tx_7 1 + 1399026 1399604 . 1 579 0 -chrIV 1399026 1399605 HC_gene_1593_tx_8 1 + 1399026 1399605 . 1 580 0 -chrIV 1399026 1399608 HC_gene_1593_tx_9 1 + 1399026 1399608 . 1 583 0 -chrIV 1399026 1399611 HC_gene_1593_tx_10 6 + 1399026 1399611 . 1 586 0 -chrIV 1399026 1399829 HC_gene_1593_tx_11 40 + 1399026 1399829 . 1 804 0 -chrIV 1399026 1399969 HC_gene_1593_tx_12 4 + 1399026 1399969 . 1 944 0 -chrIV 1399115 1399829 HC_gene_1593_tx_13 3 + 1399115 1399829 . 1 715 0 -chrIV 1399115 1399969 HC_gene_1593_tx_14 1 + 1399115 1399969 . 1 855 0 -chrIV 1399512 1400913 HC_gene_2190_tx_1 4 - 1399512 1400913 . 1 1402 0 -chrIV 1399512 1401105 HC_gene_2190_tx_2 2 - 1399512 1401105 . 1 1594 0 -chrIV 1399512 1401301 HC_gene_2190_tx_3 14 - 1399512 1401301 . 1 1790 0 -chrIV 1401610 1402684 HC_gene_1594_tx_1 16 + 1401610 1402684 . 2 191,500 0,575 -chrIV 1401747 1402684 HC_gene_1594_tx_2 88 + 1401747 1402684 . 1 938 0 -chrIV 1401747 1402684 HC_gene_1594_tx_3 1093 + 1401747 1402684 . 2 54,500 0,438 -chrIV 1401747 1402684 HC_gene_1594_tx_4 11 + 1401747 1402684 . 2 58,500 0,438 -chrIV 1402247 1402684 HC_gene_1594_tx_5 1388 + 1402247 1402684 . 1 438 0 -chrIV 1402573 1403087 LC_gene_2191_tx_1 1 - 1402573 1403087 . 1 515 0 -chrIV 1402919 1403043 HC_gene_1595_tx_1 2 + 1402919 1403043 . 1 125 0 -chrIV 1402919 1403145 HC_gene_1595_tx_2 1 + 1402919 1403145 . 1 227 0 -chrIV 1402919 1403148 HC_gene_1595_tx_3 1 + 1402919 1403148 . 1 230 0 -chrIV 1402919 1403151 HC_gene_1595_tx_4 1 + 1402919 1403151 . 1 233 0 -chrIV 1402919 1403155 HC_gene_1595_tx_5 1 + 1402919 1403155 . 1 237 0 -chrIV 1402919 1403219 HC_gene_1595_tx_6 28 + 1402919 1403219 . 1 301 0 -chrIV 1403265 1404298 HC_gene_1596_tx_1 70 + 1403265 1404298 . 1 1034 0 -chrIV 1403265 1404298 HC_gene_1596_tx_2 1 + 1403265 1404298 . 2 712,262 0,772 -chrIV 1403265 1404534 HC_gene_1596_tx_3 2 + 1403265 1404534 . 1 1270 0 -chrIV 1403637 1404298 HC_gene_1596_tx_4 9 + 1403637 1404298 . 1 662 0 -chrIV 1403733 1404298 HC_gene_1596_tx_5 9 + 1403733 1404298 . 1 566 0 -chrIV 1404207 1404975 HC_gene_2192_tx_1 3 - 1404207 1404975 . 1 769 0 -chrIV 1404207 1405173 HC_gene_2192_tx_3 1 - 1404207 1405173 . 1 967 0 -chrIV 1404207 1405477 HC_gene_2192_tx_4 2 - 1404207 1405477 . 1 1271 0 -chrIV 1404207 1405923 HC_gene_2192_tx_5 2 - 1404207 1405923 . 1 1717 0 -chrIV 1404354 1404975 HC_gene_2192_tx_2 8 - 1404354 1404975 . 1 622 0 -chrIV 1404354 1405173 HC_gene_2192_tx_6 3 - 1404354 1405173 . 1 820 0 -chrIV 1404354 1405347 HC_gene_2192_tx_7 2 - 1404354 1405347 . 1 994 0 -chrIV 1404354 1405477 HC_gene_2192_tx_8 5 - 1404354 1405477 . 1 1124 0 -chrIV 1404354 1405739 HC_gene_2192_tx_9 1 - 1404354 1405739 . 1 1386 0 -chrIV 1404354 1405923 HC_gene_2192_tx_10 15 - 1404354 1405923 . 1 1570 0 -chrIV 1404354 1405923 HC_gene_2192_tx_11 1 - 1404354 1405923 . 2 549,969 0,601 -chrIV 1406081 1407487 HC_gene_1597_tx_1 4 + 1406081 1407487 . 1 1407 0 -chrIV 1406081 1407667 HC_gene_1597_tx_2 1 + 1406081 1407667 . 1 1587 0 -chrIV 1406081 1408526 HC_gene_1597_tx_3 1 + 1406081 1408526 . 1 2446 0 -chrIV 1406081 1408848 HC_gene_1597_tx_4 1 + 1406081 1408848 . 1 2768 0 -chrIV 1407351 1408357 HC_gene_2193_tx_1 2 - 1407351 1408357 . 1 1007 0 -chrIV 1407351 1409530 HC_gene_2193_tx_2 2 - 1407351 1409530 . 1 2180 0 -chrIV 1407351 1409907 HC_gene_2193_tx_3 3 - 1407351 1409907 . 1 2557 0 -chrIV 1407351 1410013 HC_gene_2193_tx_4 3 - 1407351 1410013 . 1 2663 0 -chrIV 1407351 1410193 HC_gene_2193_tx_5 1 - 1407351 1410193 . 2 1319,1476 0,1367 -chrIV 1407351 1410193 HC_gene_2193_tx_6 1 - 1407351 1410193 . 2 1322,1404 0,1439 -chrIV 1407351 1410193 HC_gene_2193_tx_7 4 - 1407351 1410193 . 1 2843 0 -chrIV 1410249 1411146 HC_gene_2194_tx_1 36 - 1410249 1411146 . 1 898 0 -chrIV 1410558 1411272 MC_gene_1598_tx_1 1 + 1410558 1411272 . 1 715 0 -chrIV 1410620 1411978 MC_gene_1599_tx_1 1 + 1410620 1411978 . 1 1359 0 -chrIV 1412105 1414423 HC_gene_1600_tx_1 39 + 1412105 1414423 . 1 2319 0 -chrIV 1412105 1414423 HC_gene_1600_tx_2 1 + 1412105 1414423 . 2 1251,1010 0,1309 -chrIV 1412105 1414423 HC_gene_1600_tx_3 1 + 1412105 1414423 . 2 1250,1000 0,1319 -chrIV 1412105 1414423 HC_gene_1600_tx_4 1 + 1412105 1414423 . 2 1014,987 0,1332 -chrIV 1412296 1414423 HC_gene_1600_tx_5 4 + 1412296 1414423 . 1 2128 0 -chrIV 1412296 1414423 HC_gene_1600_tx_6 1 + 1412296 1414423 . 2 1078,994 0,1134 -chrIV 1412562 1414423 HC_gene_1600_tx_7 5 + 1412562 1414423 . 1 1862 0 -chrIV 1414537 1415238 HC_gene_1601_tx_1 11 + 1414537 1415238 . 1 702 0 -chrIV 1414537 1415432 HC_gene_1601_tx_2 1 + 1414537 1415432 . 1 896 0 -chrIV 1414537 1416167 HC_gene_1601_tx_3 4 + 1414537 1416167 . 1 1631 0 -chrIV 1414537 1416489 HC_gene_1601_tx_4 3 + 1414537 1416489 . 1 1953 0 -chrIV 1414537 1416489 HC_gene_1601_tx_5 1 + 1414537 1416489 . 2 270,1436 0,517 -chrIV 1415126 1416766 HC_gene_2195_tx_1 4 - 1415126 1416766 . 1 1641 0 -chrIV 1415126 1416922 HC_gene_2195_tx_2 12 - 1415126 1416922 . 1 1797 0 -chrIV 1415126 1416922 HC_gene_2195_tx_3 1 - 1415126 1416922 . 2 917,780 0,1017 -chrIV 1415126 1417133 HC_gene_2195_tx_4 1 - 1415126 1417133 . 1 2008 0 -chrIV 1416115 1416922 HC_gene_2195_tx_5 1 - 1416115 1416922 . 1 808 0 -chrIV 1417096 1418561 HC_gene_1602_tx_1 1 + 1417096 1418561 . 1 1466 0 -chrIV 1417218 1418318 MC_gene_2196_tx_1 1 - 1417218 1418318 . 1 1101 0 -chrIV 1417354 1418561 HC_gene_1602_tx_2 11 + 1417354 1418561 . 1 1208 0 -chrIV 1417354 1418561 HC_gene_1602_tx_3 1 + 1417354 1418561 . 2 135,998 0,210 -chrIV 1417354 1418561 HC_gene_1602_tx_4 1 + 1417354 1418561 . 2 268,844 0,364 -chrIV 1418341 1418986 HC_gene_2197_tx_1 1 - 1418341 1418986 . 1 646 0 -chrIV 1418341 1420284 HC_gene_2197_tx_5 1 - 1418341 1420284 . 1 1944 0 -chrIV 1418341 1420284 HC_gene_2197_tx_6 1 - 1418341 1420284 . 2 636,1206 0,738 -chrIV 1418440 1418986 HC_gene_2197_tx_2 20 - 1418440 1418986 . 1 547 0 -chrIV 1418440 1419119 HC_gene_2197_tx_3 11 - 1418440 1419119 . 1 680 0 -chrIV 1418440 1419218 HC_gene_2197_tx_4 5 - 1418440 1419218 . 1 779 0 -chrIV 1418440 1419783 HC_gene_2197_tx_7 4 - 1418440 1419783 . 1 1344 0 -chrIV 1418440 1420029 HC_gene_2197_tx_8 5 - 1418440 1420029 . 1 1590 0 -chrIV 1418440 1420284 HC_gene_2197_tx_9 35 - 1418440 1420284 . 1 1845 0 -chrIV 1418440 1420284 HC_gene_2197_tx_10 1 - 1418440 1420284 . 2 846,947 0,898 -chrIV 1418440 1420850 HC_gene_2198_tx_1 1 - 1418440 1420850 . 1 2411 0 -chrIV 1419122 1420361 LC_gene_1603_tx_1 1 + 1419122 1420361 . 1 1240 0 -chrIV 1420240 1420850 HC_gene_2198_tx_2 1 - 1420240 1420850 . 1 611 0 -chrIV 1420243 1420648 HC_gene_2198_tx_31 1 - 1420243 1420648 . 1 406 0 -chrIV 1420243 1420850 HC_gene_2198_tx_3 1 - 1420243 1420850 . 1 608 0 -chrIV 1420244 1420850 HC_gene_2198_tx_4 2 - 1420244 1420850 . 1 607 0 -chrIV 1420251 1420850 HC_gene_2198_tx_5 1 - 1420251 1420850 . 1 600 0 -chrIV 1420253 1420850 HC_gene_2198_tx_6 1 - 1420253 1420850 . 1 598 0 -chrIV 1420254 1420850 HC_gene_2198_tx_7 1 - 1420254 1420850 . 1 597 0 -chrIV 1420256 1420648 HC_gene_2198_tx_32 1 - 1420256 1420648 . 1 393 0 -chrIV 1420256 1420850 HC_gene_2198_tx_8 2 - 1420256 1420850 . 1 595 0 -chrIV 1420257 1420850 HC_gene_2198_tx_9 1 - 1420257 1420850 . 1 594 0 -chrIV 1420259 1420648 HC_gene_2198_tx_33 1 - 1420259 1420648 . 1 390 0 -chrIV 1420260 1420850 HC_gene_2198_tx_10 1 - 1420260 1420850 . 1 591 0 -chrIV 1420262 1420648 HC_gene_2198_tx_34 1 - 1420262 1420648 . 1 387 0 -chrIV 1420262 1420850 HC_gene_2198_tx_11 4 - 1420262 1420850 . 1 589 0 -chrIV 1420263 1420648 HC_gene_2198_tx_35 1 - 1420263 1420648 . 1 386 0 -chrIV 1420263 1420850 HC_gene_2198_tx_12 1 - 1420263 1420850 . 1 588 0 -chrIV 1420264 1420850 HC_gene_2198_tx_13 1 - 1420264 1420850 . 1 587 0 -chrIV 1420265 1420667 HC_gene_2198_tx_36 1 - 1420265 1420667 . 1 403 0 -chrIV 1420265 1420928 HC_gene_2198_tx_14 1 - 1420265 1420928 . 1 664 0 -chrIV 1420265 1420929 HC_gene_2198_tx_15 1 - 1420265 1420929 . 1 665 0 -chrIV 1420266 1420922 HC_gene_2198_tx_16 1 - 1420266 1420922 . 1 657 0 -chrIV 1420271 1420658 HC_gene_2198_tx_37 1 - 1420271 1420658 . 1 388 0 -chrIV 1420273 1420919 HC_gene_2198_tx_17 1 - 1420273 1420919 . 1 647 0 -chrIV 1420274 1420867 HC_gene_2198_tx_18 1 - 1420274 1420867 . 1 594 0 -chrIV 1420285 1420850 HC_gene_2198_tx_19 1 - 1420285 1420850 . 1 566 0 -chrIV 1420286 1420850 HC_gene_2198_tx_20 1 - 1420286 1420850 . 1 565 0 -chrIV 1420290 1420850 HC_gene_2198_tx_21 1 - 1420290 1420850 . 1 561 0 -chrIV 1420296 1420648 HC_gene_2198_tx_38 1 - 1420296 1420648 . 1 353 0 -chrIV 1420296 1420850 HC_gene_2198_tx_22 2 - 1420296 1420850 . 1 555 0 -chrIV 1420299 1420850 HC_gene_2198_tx_23 1 - 1420299 1420850 . 1 552 0 -chrIV 1420301 1420850 HC_gene_2198_tx_24 1 - 1420301 1420850 . 1 550 0 -chrIV 1420306 1420850 HC_gene_2198_tx_25 1 - 1420306 1420850 . 1 545 0 -chrIV 1420312 1420648 HC_gene_2198_tx_39 1 - 1420312 1420648 . 1 337 0 -chrIV 1420314 1420648 HC_gene_2198_tx_40 1 - 1420314 1420648 . 1 335 0 -chrIV 1420314 1420850 HC_gene_2198_tx_26 1 - 1420314 1420850 . 1 537 0 -chrIV 1420324 1420850 HC_gene_2198_tx_27 3 - 1420324 1420850 . 1 527 0 -chrIV 1420326 1420648 HC_gene_2198_tx_41 7 - 1420326 1420648 . 1 323 0 -chrIV 1420326 1420850 HC_gene_2198_tx_28 4 - 1420326 1420850 . 1 525 0 -chrIV 1420327 1420648 HC_gene_2198_tx_42 1 - 1420327 1420648 . 1 322 0 -chrIV 1420328 1420648 HC_gene_2198_tx_43 2 - 1420328 1420648 . 1 321 0 -chrIV 1420328 1420850 HC_gene_2198_tx_29 3 - 1420328 1420850 . 1 523 0 -chrIV 1420331 1420850 HC_gene_2198_tx_30 1 - 1420331 1420850 . 1 520 0 -chrIV 1420652 1421063 LC_gene_1604_tx_1 1 + 1420652 1421063 . 1 412 0 -chrIV 1421130 1422616 HC_gene_1605_tx_1 172 + 1421130 1422616 . 1 1487 0 -chrIV 1421130 1422616 HC_gene_1605_tx_2 1 + 1421130 1422616 . 2 47,782 0,705 -chrIV 1421130 1422616 HC_gene_1605_tx_3 1 + 1421130 1422616 . 2 1348,83 0,1404 -chrIV 1421130 1422616 HC_gene_1605_tx_4 1 + 1421130 1422616 . 2 301,1128 0,359 -chrIV 1421130 1422616 HC_gene_1605_tx_5 1 + 1421130 1422616 . 2 785,601 0,886 -chrIV 1421130 1422616 HC_gene_1605_tx_6 1 + 1421130 1422616 . 2 1270,64 0,1423 -chrIV 1421130 1422616 HC_gene_1605_tx_7 1 + 1421130 1422616 . 2 787,616 0,871 -chrIV 1421130 1422616 HC_gene_1605_tx_8 1 + 1421130 1422616 . 2 902,469 0,1018 -chrIV 1421130 1422616 HC_gene_1605_tx_9 1 + 1421130 1422616 . 2 1081,335 0,1152 -chrIV 1421130 1422616 HC_gene_1605_tx_10 1 + 1421130 1422616 . 2 334,749 0,738 -chrIV 1421130 1422695 HC_gene_1605_tx_11 2 + 1421130 1422695 . 1 1566 0 -chrIV 1421139 1422616 HC_gene_1605_tx_12 1 + 1421139 1422616 . 2 254,1128 0,350 -chrIV 1421387 1422616 HC_gene_1605_tx_13 24 + 1421387 1422616 . 1 1230 0 -chrIV 1421625 1422616 HC_gene_1605_tx_14 12 + 1421625 1422616 . 1 992 0 -chrIV 1421625 1422616 HC_gene_1605_tx_15 1 + 1421625 1422616 . 2 492,445 0,547 -chrIV 1421890 1422616 HC_gene_1605_tx_16 29 + 1421890 1422616 . 1 727 0 -chrIV 1421890 1422695 HC_gene_1605_tx_17 1 + 1421890 1422695 . 1 806 0 -chrIV 1422235 1422616 HC_gene_1605_tx_18 44 + 1422235 1422616 . 1 382 0 -chrIV 1422733 1423277 HC_gene_1606_tx_1 3 + 1422733 1423277 . 1 545 0 -chrIV 1422733 1424558 HC_gene_1606_tx_2 1 + 1422733 1424558 . 1 1826 0 -chrIV 1422733 1424774 HC_gene_1606_tx_3 8 + 1422733 1424774 . 1 2042 0 -chrIV 1424772 1426705 HC_gene_2199_tx_1 1 - 1424772 1426705 . 2 563,354 0,1580 -chrIV 1424772 1426705 HC_gene_2199_tx_2 1 - 1424772 1426705 . 2 365,414 0,1520 -chrIV 1424772 1426705 HC_gene_2199_tx_3 1 - 1424772 1426705 . 1 1934 0 -chrIV 1427309 1427677 HC_gene_2200_tx_1 12 - 1427309 1427677 . 1 369 0 -chrIV 1427309 1428011 HC_gene_2200_tx_2 18 - 1427309 1428011 . 1 703 0 -chrIV 1427309 1428011 HC_gene_2200_tx_3 1 - 1427309 1428011 . 2 376,230 0,473 -chrIV 1427309 1428130 HC_gene_2200_tx_4 79 - 1427309 1428130 . 1 822 0 -chrIV 1427309 1428145 HC_gene_2200_tx_5 1 - 1427309 1428145 . 1 837 0 -chrIV 1427309 1429060 HC_gene_2200_tx_6 3 - 1427309 1429060 . 1 1752 0 -chrIV 1427309 1429173 HC_gene_2200_tx_7 1 - 1427309 1429173 . 1 1865 0 -chrIV 1427387 1428353 MC_gene_1607_tx_1 1 + 1427387 1428353 . 1 967 0 -chrIV 1428120 1429004 HC_gene_2200_tx_8 1 - 1428120 1429004 . 1 885 0 -chrIV 1428120 1429011 HC_gene_2200_tx_9 1 - 1428120 1429011 . 1 892 0 -chrIV 1428120 1429028 HC_gene_2200_tx_10 1 - 1428120 1429028 . 1 909 0 -chrIV 1428120 1429034 HC_gene_2200_tx_11 1 - 1428120 1429034 . 1 915 0 -chrIV 1428204 1429060 HC_gene_2200_tx_12 1 - 1428204 1429060 . 1 857 0 -chrIV 1428210 1429060 HC_gene_2200_tx_13 1 - 1428210 1429060 . 1 851 0 -chrIV 1428211 1429060 HC_gene_2200_tx_14 1 - 1428211 1429060 . 1 850 0 -chrIV 1428212 1429060 HC_gene_2200_tx_15 1 - 1428212 1429060 . 1 849 0 -chrIV 1428213 1429060 HC_gene_2200_tx_16 1 - 1428213 1429060 . 1 848 0 -chrIV 1428223 1429060 HC_gene_2200_tx_17 1 - 1428223 1429060 . 1 838 0 -chrIV 1428224 1429060 HC_gene_2200_tx_18 1 - 1428224 1429060 . 1 837 0 -chrIV 1428229 1429060 HC_gene_2200_tx_19 1 - 1428229 1429060 . 1 832 0 -chrIV 1428236 1428892 HC_gene_2200_tx_40 1 - 1428236 1428892 . 1 657 0 -chrIV 1428240 1429060 HC_gene_2200_tx_20 2 - 1428240 1429060 . 1 821 0 -chrIV 1428242 1428892 HC_gene_2200_tx_41 1 - 1428242 1428892 . 1 651 0 -chrIV 1428242 1429060 HC_gene_2200_tx_21 2 - 1428242 1429060 . 1 819 0 -chrIV 1428244 1429060 HC_gene_2200_tx_22 1 - 1428244 1429060 . 1 817 0 -chrIV 1428245 1428892 HC_gene_2200_tx_42 1 - 1428245 1428892 . 1 648 0 -chrIV 1428245 1429060 HC_gene_2200_tx_23 2 - 1428245 1429060 . 1 816 0 -chrIV 1428248 1428892 HC_gene_2200_tx_43 1 - 1428248 1428892 . 1 645 0 -chrIV 1428248 1429060 HC_gene_2200_tx_24 3 - 1428248 1429060 . 1 813 0 -chrIV 1428249 1429060 HC_gene_2200_tx_25 1 - 1428249 1429060 . 1 812 0 -chrIV 1428250 1428892 HC_gene_2200_tx_44 1 - 1428250 1428892 . 1 643 0 -chrIV 1428250 1429060 HC_gene_2200_tx_26 4 - 1428250 1429060 . 1 811 0 -chrIV 1428252 1428892 HC_gene_2200_tx_45 2 - 1428252 1428892 . 1 641 0 -chrIV 1428252 1429060 HC_gene_2200_tx_27 10 - 1428252 1429060 . 1 809 0 -chrIV 1428252 1429173 HC_gene_2200_tx_28 1 - 1428252 1429173 . 1 922 0 -chrIV 1428253 1429060 HC_gene_2200_tx_29 13 - 1428253 1429060 . 1 808 0 -chrIV 1428254 1428892 HC_gene_2200_tx_46 2 - 1428254 1428892 . 1 639 0 -chrIV 1428254 1429060 HC_gene_2200_tx_30 10 - 1428254 1429060 . 1 807 0 -chrIV 1428255 1428892 HC_gene_2200_tx_47 2 - 1428255 1428892 . 1 638 0 -chrIV 1428255 1429060 HC_gene_2200_tx_31 2 - 1428255 1429060 . 1 806 0 -chrIV 1428256 1429060 HC_gene_2200_tx_32 1 - 1428256 1429060 . 1 805 0 -chrIV 1428258 1428892 HC_gene_2200_tx_48 1 - 1428258 1428892 . 1 635 0 -chrIV 1428258 1429060 HC_gene_2200_tx_33 6 - 1428258 1429060 . 1 803 0 -chrIV 1428259 1429060 HC_gene_2200_tx_34 2 - 1428259 1429060 . 1 802 0 -chrIV 1428261 1428755 HC_gene_2200_tx_51 2 - 1428261 1428755 . 1 495 0 -chrIV 1428261 1428892 HC_gene_2200_tx_49 1 - 1428261 1428892 . 1 632 0 -chrIV 1428261 1429060 HC_gene_2200_tx_35 26 - 1428261 1429060 . 1 800 0 -chrIV 1428262 1428755 HC_gene_2200_tx_52 3 - 1428262 1428755 . 1 494 0 -chrIV 1428262 1428892 HC_gene_2200_tx_50 2 - 1428262 1428892 . 1 631 0 -chrIV 1428262 1429060 HC_gene_2200_tx_36 20 - 1428262 1429060 . 1 799 0 -chrIV 1428263 1429060 HC_gene_2200_tx_37 5 - 1428263 1429060 . 1 798 0 -chrIV 1428264 1429060 HC_gene_2200_tx_38 1 - 1428264 1429060 . 1 797 0 -chrIV 1428266 1429060 HC_gene_2200_tx_39 8 - 1428266 1429060 . 1 795 0 -chrIV 1431002 1432124 HC_gene_1608_tx_1 2 + 1431002 1432124 . 1 1123 0 -chrIV 1431002 1432310 HC_gene_1608_tx_2 15 + 1431002 1432310 . 1 1309 0 -chrIV 1431664 1434139 HC_gene_2201_tx_1 1 - 1431664 1434139 . 1 2476 0 -chrIV 1431784 1433424 HC_gene_2201_tx_5 1 - 1431784 1433424 . 1 1641 0 -chrIV 1431784 1434027 HC_gene_2201_tx_2 1 - 1431784 1434027 . 1 2244 0 -chrIV 1431784 1434139 HC_gene_2201_tx_3 1 - 1431784 1434139 . 1 2356 0 -chrIV 1431784 1434354 HC_gene_2201_tx_4 5 - 1431784 1434354 . 1 2571 0 -chrIV 1432617 1434750 LC_gene_1609_tx_1 1 + 1432617 1434750 . 1 2134 0 -chrIV 1434769 1434840 HC_gene_1610_tx_1 1 + 1434769 1434840 . 1 72 0 -chrIV 1434769 1435967 HC_gene_1610_tx_2 161 + 1434769 1435967 . 1 1199 0 -chrIV 1434769 1435967 HC_gene_1610_tx_3 1 + 1434769 1435967 . 2 129,810 0,389 -chrIV 1434769 1435967 HC_gene_1610_tx_4 1 + 1434769 1435967 . 2 246,762 0,437 -chrIV 1434769 1435967 HC_gene_1610_tx_5 1 + 1434769 1435967 . 2 463,627 0,572 -chrIV 1434903 1435967 HC_gene_1610_tx_6 8 + 1434903 1435967 . 1 1065 0 -chrIV 1434962 1435967 HC_gene_1610_tx_7 23 + 1434962 1435967 . 1 1006 0 -chrIV 1435193 1435967 HC_gene_1610_tx_8 15 + 1435193 1435967 . 1 775 0 -chrIV 1435399 1435967 HC_gene_1610_tx_9 25 + 1435399 1435967 . 1 569 0 -chrIV 1436047 1436666 LC_gene_2202_tx_1 1 - 1436047 1436666 . 1 620 0 -chrIV 1436115 1436708 HC_gene_1611_tx_1 91 + 1436115 1436708 . 1 594 0 -chrIV 1436896 1438089 HC_gene_1612_tx_1 47 + 1436896 1438089 . 1 1194 0 -chrIV 1436896 1438089 HC_gene_1612_tx_2 1 + 1436896 1438089 . 2 83,1013 0,181 -chrIV 1437017 1438089 HC_gene_1612_tx_3 2 + 1437017 1438089 . 1 1073 0 -chrIV 1437076 1438089 HC_gene_1612_tx_4 6 + 1437076 1438089 . 1 1014 0 -chrIV 1437146 1438089 HC_gene_1612_tx_5 7 + 1437146 1438089 . 1 944 0 -chrIV 1437471 1438089 HC_gene_1612_tx_6 11 + 1437471 1438089 . 1 619 0 -chrIV 1437962 1438491 HC_gene_2203_tx_1 4 - 1437962 1438491 . 1 530 0 -chrIV 1437962 1441196 HC_gene_2203_tx_2 3 - 1437962 1441196 . 1 3235 0 -chrIV 1441210 1442111 HC_gene_2204_tx_1 5 - 1441210 1442111 . 1 902 0 -chrIV 1441210 1443423 HC_gene_2204_tx_3 1 - 1441210 1443423 . 1 2214 0 -chrIV 1441210 1443426 HC_gene_2204_tx_4 13 - 1441210 1443426 . 1 2217 0 -chrIV 1441210 1443426 HC_gene_2204_tx_5 1 - 1441210 1443426 . 2 994,1162 0,1055 -chrIV 1441210 1443428 HC_gene_2204_tx_6 1 - 1441210 1443428 . 1 2219 0 -chrIV 1441356 1442111 HC_gene_2204_tx_2 25 - 1441356 1442111 . 1 756 0 -chrIV 1441356 1443270 HC_gene_2204_tx_7 6 - 1441356 1443270 . 1 1915 0 -chrIV 1441356 1443420 HC_gene_2204_tx_8 1 - 1441356 1443420 . 2 550,1315 0,750 -chrIV 1441356 1443426 HC_gene_2204_tx_9 67 - 1441356 1443426 . 1 2071 0 -chrIV 1441356 1443426 HC_gene_2204_tx_10 1 - 1441356 1443426 . 2 858,1128 0,943 -chrIV 1443602 1443994 HC_gene_2205_tx_1 49 - 1443602 1443994 . 1 393 0 -chrIV 1443602 1444163 HC_gene_2205_tx_2 42 - 1443602 1444163 . 1 562 0 -chrIV 1443602 1444636 HC_gene_2205_tx_3 27 - 1443602 1444636 . 1 1035 0 -chrIV 1443602 1444636 HC_gene_2205_tx_4 1 - 1443602 1444636 . 2 433,499 0,536 -chrIV 1443602 1444636 HC_gene_2205_tx_5 1 - 1443602 1444636 . 2 517,171 0,864 -chrIV 1443602 1444918 HC_gene_2205_tx_6 14 - 1443602 1444918 . 1 1317 0 -chrIV 1443602 1445089 HC_gene_2205_tx_7 7 - 1443602 1445089 . 1 1488 0 -chrIV 1443602 1445254 HC_gene_2205_tx_8 3 - 1443602 1445254 . 1 1653 0 -chrIV 1443602 1445315 HC_gene_2205_tx_9 15 - 1443602 1445315 . 1 1714 0 -chrIV 1443602 1445315 HC_gene_2205_tx_10 1 - 1443602 1445315 . 2 1560,82 0,1632 -chrIV 1443602 1445543 HC_gene_2205_tx_11 79 - 1443602 1445543 . 1 1942 0 -chrIV 1443602 1445543 HC_gene_2205_tx_12 1 - 1443602 1445543 . 2 923,623 0,1319 -chrIV 1443602 1445543 HC_gene_2205_tx_13 1 - 1443602 1445543 . 3 271,21,524 0,788,1418 -chrIV 1443602 1445543 HC_gene_2205_tx_14 1 - 1443602 1445543 . 2 1060,782 0,1160 -chrIV 1443602 1445543 HC_gene_2205_tx_15 1 - 1443602 1445543 . 2 475,1426 0,516 -chrIV 1445763 1446166 MC_gene_1613_tx_1 1 + 1445763 1446166 . 1 404 0 -chrIV 1445792 1446923 HC_gene_2206_tx_1 1 - 1445792 1446923 . 1 1132 0 -chrIV 1445792 1447030 HC_gene_2206_tx_2 35 - 1445792 1447030 . 1 1239 0 -chrIV 1447836 1450222 MC_gene_1614_tx_1 1 + 1447836 1450222 . 1 2387 0 -chrIV 1450105 1450455 HC_gene_2207_tx_1 2964 - 1450105 1450455 . 1 351 0 -chrIV 1450105 1450874 HC_gene_2207_tx_2 101 - 1450105 1450874 . 1 770 0 -chrIV 1451048 1452236 MC_gene_2208_tx_1 1 - 1451048 1452236 . 1 1189 0 -chrIV 1451191 1452451 MC_gene_2209_tx_1 1 - 1451191 1452451 . 1 1261 0 -chrIV 1451337 1453125 HC_gene_1615_tx_1 1 + 1451337 1453125 . 2 290,1323 0,466 -chrIV 1451337 1453125 HC_gene_1615_tx_2 1 + 1451337 1453125 . 2 785,853 0,936 -chrIV 1452656 1453125 HC_gene_1615_tx_3 14 + 1452656 1453125 . 1 470 0 -chrIV 1453015 1454052 HC_gene_2210_tx_1 17 - 1453015 1454052 . 1 1038 0 -chrIV 1453015 1454292 HC_gene_2210_tx_2 13 - 1453015 1454292 . 1 1278 0 -chrIV 1453015 1454513 HC_gene_2210_tx_3 99 - 1453015 1454513 . 1 1499 0 -chrIV 1453015 1454513 HC_gene_2210_tx_4 1 - 1453015 1454513 . 2 496,947 0,552 -chrIV 1453015 1454513 HC_gene_2210_tx_5 1 - 1453015 1454513 . 2 591,116 0,1383 -chrIV 1453015 1454622 HC_gene_2210_tx_6 5 - 1453015 1454622 . 1 1608 0 -chrIV 1453145 1454052 HC_gene_2210_tx_7 1 - 1453145 1454052 . 1 908 0 -chrIV 1453145 1454292 HC_gene_2210_tx_8 3 - 1453145 1454292 . 1 1148 0 -chrIV 1453145 1454513 HC_gene_2210_tx_9 19 - 1453145 1454513 . 1 1369 0 -chrIV 1453145 1454622 HC_gene_2210_tx_10 1 - 1453145 1454622 . 1 1478 0 -chrIV 1454622 1454930 LC_gene_1616_tx_1 1 + 1454622 1454930 . 1 309 0 -chrIV 1454833 1455897 HC_gene_2211_tx_1 1 - 1454833 1455897 . 1 1065 0 -chrIV 1454842 1455897 HC_gene_2211_tx_2 1 - 1454842 1455897 . 1 1056 0 -chrIV 1454844 1455897 HC_gene_2211_tx_3 2 - 1454844 1455897 . 1 1054 0 -chrIV 1454847 1455897 HC_gene_2211_tx_4 1 - 1454847 1455897 . 1 1051 0 -chrIV 1454853 1455897 HC_gene_2211_tx_5 1 - 1454853 1455897 . 2 596,188 0,857 -chrIV 1454856 1455897 HC_gene_2211_tx_6 1 - 1454856 1455897 . 2 45,855 0,187 -chrIV 1454857 1455897 HC_gene_2211_tx_7 1 - 1454857 1455897 . 1 1041 0 -chrIV 1454860 1455897 HC_gene_2211_tx_8 1 - 1454860 1455897 . 1 1038 0 -chrIV 1454866 1455897 HC_gene_2211_tx_9 1 - 1454866 1455897 . 1 1032 0 -chrIV 1454867 1455897 HC_gene_2211_tx_10 4 - 1454867 1455897 . 1 1031 0 -chrIV 1454868 1455897 HC_gene_2211_tx_11 2 - 1454868 1455897 . 1 1030 0 -chrIV 1454871 1455897 HC_gene_2211_tx_12 1 - 1454871 1455897 . 1 1027 0 -chrIV 1454872 1455897 HC_gene_2211_tx_13 1 - 1454872 1455897 . 1 1026 0 -chrIV 1454877 1455897 HC_gene_2211_tx_14 2 - 1454877 1455897 . 1 1021 0 -chrIV 1454882 1455897 HC_gene_2211_tx_15 1 - 1454882 1455897 . 1 1016 0 -chrIV 1456075 1456718 HC_gene_1617_tx_1 16 + 1456075 1456718 . 1 644 0 -chrIV 1456083 1457489 HC_gene_2212_tx_1 4 - 1456083 1457489 . 1 1407 0 -chrIV 1456083 1457812 HC_gene_2212_tx_2 3 - 1456083 1457812 . 1 1730 0 -chrIV 1456083 1458421 HC_gene_2212_tx_4 2 - 1456083 1458421 . 1 2339 0 -chrIV 1456083 1458696 HC_gene_2212_tx_5 1 - 1456083 1458696 . 1 2614 0 -chrIV 1456083 1459376 HC_gene_2212_tx_9 10 - 1456083 1459376 . 1 3294 0 -chrIV 1456083 1459376 HC_gene_2212_tx_10 1 - 1456083 1459376 . 2 1491,1099 0,2195 -chrIV 1456083 1459376 HC_gene_2212_tx_11 1 - 1456083 1459376 . 2 1863,775 0,2519 -chrIV 1456083 1461573 HC_gene_2212_tx_15 1 - 1456083 1461573 . 1 5491 0 -chrIV 1456274 1456718 HC_gene_1617_tx_2 3 + 1456274 1456718 . 1 445 0 -chrIV 1456363 1457812 HC_gene_2212_tx_3 1 - 1456363 1457812 . 1 1450 0 -chrIV 1456363 1458421 HC_gene_2212_tx_6 1 - 1456363 1458421 . 1 2059 0 -chrIV 1456363 1458696 HC_gene_2212_tx_7 2 - 1456363 1458696 . 1 2334 0 -chrIV 1456363 1459376 HC_gene_2212_tx_12 2 - 1456363 1459376 . 1 3014 0 -chrIV 1456520 1458340 HC_gene_2212_tx_8 2 - 1456520 1458340 . 1 1821 0 -chrIV 1456520 1459376 HC_gene_2212_tx_13 4 - 1456520 1459376 . 1 2857 0 -chrIV 1456630 1459376 HC_gene_2212_tx_14 2 - 1456630 1459376 . 1 2747 0 -chrIV 1457521 1459374 LC_gene_1618_tx_1 1 + 1457521 1459374 . 1 1854 0 -chrIV 1459302 1459376 HC_gene_2212_tx_16 4 - 1459302 1459376 . 1 75 0 -chrIV 1459302 1461573 HC_gene_2212_tx_17 3 - 1459302 1461573 . 1 2272 0 -chrIV 1459302 1461573 HC_gene_2212_tx_18 1 - 1459302 1461573 . 2 673,1450 0,822 -chrIV 1459770 1460841 LC_gene_1619_tx_1 1 + 1459770 1460841 . 1 1072 0 -chrIV 1461579 1461806 LC_gene_2213_tx_1 1 - 1461579 1461806 . 1 228 0 -chrIV 1462181 1462989 HC_gene_2214_tx_1 10 - 1462181 1462989 . 1 809 0 -chrIV 1462181 1464210 HC_gene_2214_tx_2 2 - 1462181 1464210 . 1 2030 0 -chrIV 1462181 1464631 HC_gene_2214_tx_3 1 - 1462181 1464631 . 2 1252,1089 0,1362 -chrIV 1462181 1464631 HC_gene_2214_tx_4 2 - 1462181 1464631 . 1 2451 0 -chrIV 1462181 1465906 HC_gene_2214_tx_5 3 - 1462181 1465906 . 1 3726 0 -chrIV 1462181 1465906 HC_gene_2214_tx_6 1 - 1462181 1465906 . 2 2506,1162 0,2564 -chrIV 1465544 1466336 MC_gene_1620_tx_1 1 + 1465544 1466336 . 1 793 0 -chrIV 1466120 1466599 HC_gene_2215_tx_1 2 - 1466120 1466599 . 1 480 0 -chrIV 1466120 1466696 HC_gene_2215_tx_2 2 - 1466120 1466696 . 1 577 0 -chrIV 1466120 1468184 HC_gene_2215_tx_3 3 - 1466120 1468184 . 1 2065 0 -chrIV 1466120 1468489 HC_gene_2215_tx_4 6 - 1466120 1468489 . 1 2370 0 -chrIV 1466236 1466599 HC_gene_2215_tx_17 16 - 1466236 1466599 . 1 364 0 -chrIV 1466236 1466696 HC_gene_2215_tx_18 39 - 1466236 1466696 . 1 461 0 -chrIV 1466236 1468184 HC_gene_2215_tx_5 28 - 1466236 1468184 . 1 1949 0 -chrIV 1466236 1468184 HC_gene_2215_tx_6 1 - 1466236 1468184 . 3 454,123,1217 0,549,732 -chrIV 1466236 1468489 HC_gene_2215_tx_7 1 - 1466236 1468489 . 2 797,616 0,1638 -chrIV 1466236 1468489 HC_gene_2215_tx_8 1 - 1466236 1468489 . 2 1202,343 0,1911 -chrIV 1466236 1468489 HC_gene_2215_tx_9 115 - 1466236 1468489 . 1 2254 0 -chrIV 1466236 1468489 HC_gene_2215_tx_10 1 - 1466236 1468489 . 2 1055,1152 0,1102 -chrIV 1466236 1468489 HC_gene_2215_tx_11 1 - 1466236 1468489 . 2 966,1237 0,1017 -chrIV 1466236 1468489 HC_gene_2215_tx_12 1 - 1466236 1468489 . 2 1059,553 0,1701 -chrIV 1466236 1468489 HC_gene_2215_tx_13 1 - 1466236 1468489 . 2 859,1330 0,924 -chrIV 1466236 1468489 HC_gene_2215_tx_14 1 - 1466236 1468489 . 2 1213,889 0,1365 -chrIV 1466236 1468489 HC_gene_2215_tx_15 1 - 1466236 1468489 . 2 1082,546 0,1708 -chrIV 1466236 1468489 HC_gene_2215_tx_16 1 - 1466236 1468489 . 3 596,44,553 0,1272,1701 -chrIV 1469354 1469854 HC_gene_1621_tx_1 710 + 1469354 1469854 . 1 501 0 -chrIV 1469542 1469854 HC_gene_1621_tx_2 49 + 1469542 1469854 . 1 313 0 -chrIV 1469785 1470215 MC_gene_2216_tx_1 1 - 1469785 1470215 . 1 431 0 -chrIV 1469991 1470512 HC_gene_1622_tx_1 57 + 1469991 1470512 . 1 522 0 -chrIV 1470108 1470512 HC_gene_1622_tx_2 5 + 1470108 1470512 . 1 405 0 -chrIV 1470388 1470795 HC_gene_2217_tx_1 192 - 1470388 1470795 . 1 408 0 -chrIV 1470994 1471550 HC_gene_1623_tx_1 507 + 1470994 1471550 . 1 557 0 -chrIV 1471455 1472827 HC_gene_2218_tx_1 5 - 1471455 1472827 . 1 1373 0 -chrIV 1471455 1473075 HC_gene_2218_tx_2 17 - 1471455 1473075 . 1 1621 0 -chrIV 1471455 1473075 HC_gene_2218_tx_3 1 - 1471455 1473075 . 2 72,1514 0,107 -chrIV 1473201 1474852 HC_gene_1624_tx_1 20 + 1473201 1474852 . 1 1652 0 -chrIV 1473201 1474852 HC_gene_1624_tx_2 1 + 1473201 1474852 . 2 905,668 0,984 -chrIV 1473407 1474852 HC_gene_1624_tx_3 6 + 1473407 1474852 . 1 1446 0 -chrIV 1473635 1474852 HC_gene_1624_tx_4 1 + 1473635 1474852 . 1 1218 0 -chrIV 1474037 1474852 HC_gene_1624_tx_5 3 + 1474037 1474852 . 1 816 0 -chrIV 1474855 1475440 HC_gene_2219_tx_1 64 - 1474855 1475440 . 1 586 0 -chrIV 1474855 1475606 HC_gene_2219_tx_2 31 - 1474855 1475606 . 1 752 0 -chrIV 1474855 1475857 HC_gene_2219_tx_3 27 - 1474855 1475857 . 1 1003 0 -chrIV 1474855 1476093 HC_gene_2219_tx_4 10 - 1474855 1476093 . 1 1239 0 -chrIV 1474855 1476093 HC_gene_2219_tx_5 1 - 1474855 1476093 . 2 896,202 0,1037 -chrIV 1474855 1476249 HC_gene_2219_tx_6 29 - 1474855 1476249 . 1 1395 0 -chrIV 1474855 1476249 HC_gene_2219_tx_7 1 - 1474855 1476249 . 2 257,1025 0,370 -chrIV 1474855 1476249 HC_gene_2219_tx_8 1 - 1474855 1476249 . 2 758,358 0,1037 -chrIV 1474855 1476517 HC_gene_2219_tx_9 1 - 1474855 1476517 . 2 961,288 0,1375 -chrIV 1474855 1476533 HC_gene_2219_tx_10 107 - 1474855 1476533 . 1 1679 0 -chrIV 1474855 1476533 HC_gene_2219_tx_11 1 - 1474855 1476533 . 2 1134,322 0,1357 -chrIV 1474855 1476533 HC_gene_2219_tx_12 1 - 1474855 1476533 . 2 1083,135 0,1544 -chrIV 1474855 1476533 HC_gene_2219_tx_13 1 - 1474855 1476533 . 2 763,799 0,880 -chrIV 1474855 1476533 HC_gene_2219_tx_14 1 - 1474855 1476533 . 2 817,787 0,892 -chrIV 1474855 1476533 HC_gene_2219_tx_15 1 - 1474855 1476533 . 2 1053,438 0,1241 -chrIV 1474855 1476533 HC_gene_2219_tx_16 1 - 1474855 1476533 . 2 788,208 0,1471 -chrIV 1474855 1476736 HC_gene_2219_tx_17 2 - 1474855 1476736 . 1 1882 0 -chrIV 1474855 1476976 HC_gene_2219_tx_18 2 - 1474855 1476976 . 1 2122 0 -chrIV 1474980 1476589 LC_gene_1625_tx_1 1 + 1474980 1476589 . 1 1610 0 -chrIV 1476509 1476736 HC_gene_2219_tx_19 3 - 1476509 1476736 . 1 228 0 -chrIV 1476509 1476829 HC_gene_2219_tx_20 2 - 1476509 1476829 . 1 321 0 -chrIV 1476509 1476891 HC_gene_2219_tx_21 2 - 1476509 1476891 . 1 383 0 -chrIV 1476509 1476961 HC_gene_2219_tx_22 1 - 1476509 1476961 . 1 453 0 -chrIV 1476509 1476976 HC_gene_2219_tx_23 12 - 1476509 1476976 . 1 468 0 -chrIV 1476573 1476829 HC_gene_2219_tx_24 1 - 1476573 1476829 . 1 257 0 -chrIV 1476573 1476957 HC_gene_2219_tx_25 1 - 1476573 1476957 . 1 385 0 -chrIV 1476573 1476962 HC_gene_2219_tx_26 1 - 1476573 1476962 . 1 390 0 -chrIV 1476573 1476976 HC_gene_2219_tx_27 10 - 1476573 1476976 . 1 404 0 -chrIV 1476867 1478485 HC_gene_1626_tx_1 2 + 1476867 1478485 . 1 1619 0 -chrIV 1476993 1478485 HC_gene_1626_tx_2 3 + 1476993 1478485 . 1 1493 0 -chrIV 1477165 1478485 HC_gene_1626_tx_3 67 + 1477165 1478485 . 1 1321 0 -chrIV 1477546 1478485 HC_gene_1626_tx_4 11 + 1477546 1478485 . 1 940 0 -chrIV 1477653 1478485 HC_gene_1626_tx_5 5 + 1477653 1478485 . 1 833 0 -chrIV 1477917 1478485 HC_gene_1626_tx_6 12 + 1477917 1478485 . 1 569 0 -chrIV 1478116 1478485 HC_gene_1626_tx_7 16 + 1478116 1478485 . 1 370 0 -chrIV 1478225 1480257 MC_gene_2220_tx_1 1 - 1478225 1480257 . 1 2033 0 -chrIV 1478572 1480212 HC_gene_1627_tx_1 49 + 1478572 1480212 . 1 1641 0 -chrIV 1478572 1480212 HC_gene_1627_tx_2 1 + 1478572 1480212 . 2 999,584 0,1057 -chrIV 1478572 1480212 HC_gene_1627_tx_3 1 + 1478572 1480212 . 2 450,1078 0,563 -chrIV 1479166 1480212 HC_gene_1627_tx_4 6 + 1479166 1480212 . 1 1047 0 -chrIV 1479461 1480212 HC_gene_1627_tx_5 4 + 1479461 1480212 . 1 752 0 -chrIV 1480416 1481109 HC_gene_1628_tx_1 224 + 1480416 1481109 . 1 694 0 -chrIV 1480416 1481334 HC_gene_1628_tx_2 9 + 1480416 1481334 . 1 919 0 -chrIV 1480995 1483490 HC_gene_2221_tx_1 7 - 1480995 1483490 . 1 2496 0 -chrIV 1480995 1483490 HC_gene_2221_tx_2 1 - 1480995 1483490 . 2 2039,44 0,2452 -chrIV 1480995 1483490 HC_gene_2221_tx_3 1 - 1480995 1483490 . 2 1008,1362 0,1134 -chrIV 1483731 1484521 HC_gene_1629_tx_1 1 + 1483731 1484521 . 1 791 0 -chrIV 1483731 1485585 HC_gene_1629_tx_2 1 + 1483731 1485585 . 1 1855 0 -chrIV 1485513 1489058 HC_gene_2222_tx_1 1 - 1485513 1489058 . 1 3546 0 -chrIV 1486258 1487117 LC_gene_1630_tx_1 1 + 1486258 1487117 . 1 860 0 -chrIV 1487209 1489058 HC_gene_2222_tx_2 22 - 1487209 1489058 . 1 1850 0 -chrIV 1487209 1489058 HC_gene_2222_tx_3 1 - 1487209 1489058 . 2 1191,288 0,1562 -chrIV 1487502 1489058 HC_gene_2222_tx_4 1 - 1487502 1489058 . 1 1557 0 -chrIV 1487603 1489206 LC_gene_1631_tx_1 1 + 1487603 1489206 . 1 1604 0 -chrIV 1489260 1489844 HC_gene_2223_tx_1 18328 - 1489260 1489844 . 1 585 0 -chrIV 1489525 1489844 HC_gene_2223_tx_2 22 - 1489525 1489844 . 1 320 0 -chrIV 1489530 1489844 HC_gene_2223_tx_3 63 - 1489530 1489844 . 1 315 0 -chrIV 1490556 1491059 HC_gene_1632_tx_1 1 + 1490556 1491059 . 1 504 0 -chrIV 1490563 1491059 HC_gene_1632_tx_2 1 + 1490563 1491059 . 1 497 0 -chrIV 1490567 1491059 HC_gene_1632_tx_3 163 + 1490567 1491059 . 1 493 0 -chrIV 1490567 1492535 HC_gene_1632_tx_11 1 + 1490567 1492535 . 2 160,1322 0,647 -chrIV 1490567 1492535 HC_gene_1632_tx_12 1 + 1490567 1492535 . 1 1969 0 -chrIV 1490582 1491059 HC_gene_1632_tx_4 2 + 1490582 1491059 . 1 478 0 -chrIV 1490584 1491059 HC_gene_1632_tx_5 1 + 1490584 1491059 . 1 476 0 -chrIV 1490601 1491059 HC_gene_1632_tx_6 1 + 1490601 1491059 . 1 459 0 -chrIV 1490613 1491059 HC_gene_1632_tx_7 1 + 1490613 1491059 . 1 447 0 -chrIV 1490621 1491059 HC_gene_1632_tx_8 1 + 1490621 1491059 . 1 439 0 -chrIV 1490641 1491059 HC_gene_1632_tx_9 1 + 1490641 1491059 . 1 419 0 -chrIV 1490645 1491059 HC_gene_1632_tx_10 1 + 1490645 1491059 . 1 415 0 -chrIV 1490737 1491059 HC_gene_1632_tx_13 7 + 1490737 1491059 . 1 323 0 -chrIV 1491012 1492535 HC_gene_1632_tx_14 56 + 1491012 1492535 . 1 1524 0 -chrIV 1491012 1492535 HC_gene_1632_tx_15 1 + 1491012 1492535 . 2 242,808 0,716 -chrIV 1491012 1492753 HC_gene_1632_tx_16 2 + 1491012 1492753 . 1 1742 0 -chrIV 1491012 1493214 HC_gene_1632_tx_17 1 + 1491012 1493214 . 2 1040,1064 0,1139 -chrIV 1491012 1493214 HC_gene_1632_tx_18 1 + 1491012 1493214 . 1 2203 0 -chrIV 1491396 1492535 HC_gene_1632_tx_20 37 + 1491396 1492535 . 1 1140 0 -chrIV 1491396 1492535 HC_gene_1632_tx_21 1 + 1491396 1492535 . 2 617,465 0,675 -chrIV 1491396 1493214 HC_gene_1632_tx_19 2 + 1491396 1493214 . 1 1819 0 -chrIV 1492143 1492535 HC_gene_1632_tx_22 19 + 1492143 1492535 . 1 393 0 -chrIV 1492300 1493076 HC_gene_2224_tx_1 11 - 1492300 1493076 . 1 777 0 -chrIV 1492396 1492809 HC_gene_2224_tx_3 1 - 1492396 1492809 . 1 414 0 -chrIV 1492396 1493076 HC_gene_2224_tx_2 13 - 1492396 1493076 . 1 681 0 -chrIV 1492655 1493076 HC_gene_2224_tx_4 21 - 1492655 1493076 . 1 422 0 -chrIV 1493587 1493988 HC_gene_2225_tx_1 4 - 1493587 1493988 . 1 402 0 -chrIV 1494267 1495997 HC_gene_1633_tx_1 18 + 1494267 1495997 . 1 1731 0 -chrIV 1494267 1495997 HC_gene_1633_tx_2 1 + 1494267 1495997 . 2 820,575 0,1156 -chrIV 1495935 1496194 HC_gene_2226_tx_1 12 - 1495935 1496194 . 1 260 0 -chrIV 1495935 1496253 HC_gene_2226_tx_2 88 - 1495935 1496253 . 1 319 0 -chrIV 1495935 1496395 HC_gene_2226_tx_3 37 - 1495935 1496395 . 1 461 0 -chrIV 1495935 1496580 HC_gene_2226_tx_4 597 - 1495935 1496580 . 1 646 0 -chrIV 1496077 1496580 HC_gene_2226_tx_5 32 - 1496077 1496580 . 1 504 0 -chrIV 1496672 1497763 HC_gene_2227_tx_1 45 - 1496672 1497763 . 1 1092 0 -chrIV 1496730 1497763 HC_gene_2227_tx_2 13 - 1496730 1497763 . 1 1034 0 -chrIV 1498164 1499168 LC_gene_2228_tx_1 1 - 1498164 1499168 . 1 1005 0 -chrIV 1498181 1499421 HC_gene_1634_tx_1 83 + 1498181 1499421 . 1 1241 0 -chrIV 1498181 1499421 HC_gene_1634_tx_2 1 + 1498181 1499421 . 2 280,850 0,391 -chrIV 1498181 1499496 HC_gene_1634_tx_3 1 + 1498181 1499496 . 1 1316 0 -chrIV 1498219 1499421 HC_gene_1634_tx_4 1 + 1498219 1499421 . 2 107,809 0,394 -chrIV 1498310 1499421 HC_gene_1634_tx_5 5 + 1498310 1499421 . 1 1112 0 -chrIV 1499333 1500560 HC_gene_2229_tx_1 15 - 1499333 1500560 . 1 1228 0 -chrIV 1499333 1500794 HC_gene_2229_tx_2 1 - 1499333 1500794 . 1 1462 0 -chrIV 1500710 1501144 HC_gene_1635_tx_1 9 + 1500710 1501144 . 1 435 0 -chrIV 1501195 1501907 HC_gene_2230_tx_1 5 - 1501195 1501907 . 1 713 0 -chrIV 1501195 1502197 HC_gene_2230_tx_12 10 - 1501195 1502197 . 1 1003 0 -chrIV 1501262 1501907 HC_gene_2230_tx_2 5 - 1501262 1501907 . 1 646 0 -chrIV 1501262 1502197 HC_gene_2230_tx_13 17 - 1501262 1502197 . 1 936 0 -chrIV 1501324 1502197 HC_gene_2230_tx_14 4 - 1501324 1502197 . 1 874 0 -chrIV 1501329 1502197 HC_gene_2230_tx_15 1 - 1501329 1502197 . 1 869 0 -chrIV 1501331 1501907 HC_gene_2230_tx_3 1 - 1501331 1501907 . 1 577 0 -chrIV 1501331 1502197 HC_gene_2230_tx_16 2 - 1501331 1502197 . 1 867 0 -chrIV 1501334 1502197 HC_gene_2230_tx_17 1 - 1501334 1502197 . 1 864 0 -chrIV 1501339 1502197 HC_gene_2230_tx_18 1 - 1501339 1502197 . 1 859 0 -chrIV 1501349 1501907 HC_gene_2230_tx_4 2 - 1501349 1501907 . 1 559 0 -chrIV 1501349 1502197 HC_gene_2230_tx_19 4 - 1501349 1502197 . 1 849 0 -chrIV 1501350 1502197 HC_gene_2230_tx_20 1 - 1501350 1502197 . 1 848 0 -chrIV 1501353 1502197 HC_gene_2230_tx_21 2 - 1501353 1502197 . 1 845 0 -chrIV 1501360 1502197 HC_gene_2230_tx_22 1 - 1501360 1502197 . 1 838 0 -chrIV 1501363 1501907 HC_gene_2230_tx_5 1 - 1501363 1501907 . 1 545 0 -chrIV 1501369 1501907 HC_gene_2230_tx_6 1 - 1501369 1501907 . 1 539 0 -chrIV 1501369 1502197 HC_gene_2230_tx_23 1 - 1501369 1502197 . 1 829 0 -chrIV 1501371 1501907 HC_gene_2230_tx_7 1 - 1501371 1501907 . 1 537 0 -chrIV 1501371 1502197 HC_gene_2230_tx_24 2 - 1501371 1502197 . 1 827 0 -chrIV 1501372 1501907 HC_gene_2230_tx_8 1 - 1501372 1501907 . 1 536 0 -chrIV 1501372 1502197 HC_gene_2230_tx_25 2 - 1501372 1502197 . 1 826 0 -chrIV 1501375 1501907 HC_gene_2230_tx_9 5 - 1501375 1501907 . 1 533 0 -chrIV 1501375 1502197 HC_gene_2230_tx_26 4 - 1501375 1502197 . 1 823 0 -chrIV 1501376 1502197 HC_gene_2230_tx_27 2 - 1501376 1502197 . 1 822 0 -chrIV 1501378 1501907 HC_gene_2230_tx_10 1 - 1501378 1501907 . 1 530 0 -chrIV 1501378 1502197 HC_gene_2230_tx_28 2 - 1501378 1502197 . 1 820 0 -chrIV 1501379 1501907 HC_gene_2230_tx_11 3 - 1501379 1501907 . 1 529 0 -chrIV 1501379 1502197 HC_gene_2230_tx_29 9 - 1501379 1502197 . 1 819 0 -chrIV 1503075 1504926 MC_gene_2231_tx_1 1 - 1503075 1504926 . 2 1302,333 0,1519 -chrIV 1504952 1506690 HC_gene_2232_tx_1 1 - 1504952 1506690 . 2 732,958 0,781 -chrIV 1504952 1506855 HC_gene_2232_tx_2 1 - 1504952 1506855 . 2 728,1123 0,781 -chrIV 1506934 1507349 LC_gene_2233_tx_1 1 - 1506934 1507349 . 1 416 0 -chrIV 1507063 1507979 LC_gene_1636_tx_1 1 + 1507063 1507979 . 1 917 0 -chrIV 1507790 1509610 MC_gene_2234_tx_1 1 - 1507790 1509610 . 1 1821 0 -chrIV 1507894 1509794 MC_gene_2234_tx_2 1 - 1507894 1509794 . 1 1901 0 -chrIV 1508235 1509863 MC_gene_1637_tx_1 1 + 1508235 1509863 . 1 1629 0 -chrIV 1510008 1511868 HC_gene_1638_tx_1 5 + 1510008 1511868 . 1 1861 0 -chrIV 1510835 1511763 HC_gene_1639_tx_1 1 + 1510835 1511763 . 1 929 0 -chrIV 1510835 1511868 HC_gene_1639_tx_2 39 + 1510835 1511868 . 1 1034 0 -chrIV 1510835 1511922 HC_gene_1639_tx_3 6 + 1510835 1511922 . 1 1088 0 -chrIV 1512061 1513699 HC_gene_1640_tx_1 20 + 1512061 1513699 . 1 1639 0 -chrIV 1512061 1513699 HC_gene_1640_tx_2 1 + 1512061 1513699 . 2 780,811 0,828 -chrIV 1512061 1513780 HC_gene_1640_tx_3 2 + 1512061 1513780 . 1 1720 0 -chrIV 1512061 1513870 HC_gene_1640_tx_4 4 + 1512061 1513870 . 1 1810 0 -chrIV 1512061 1513968 HC_gene_1640_tx_5 4 + 1512061 1513968 . 1 1908 0 -chrIV 1512415 1513699 HC_gene_1640_tx_6 7 + 1512415 1513699 . 1 1285 0 -chrIV 1513775 1515221 MC_gene_2235_tx_1 1 - 1513775 1515221 . 1 1447 0 -chrIV 1513881 1514496 MC_gene_2235_tx_2 1 - 1513881 1514496 . 1 616 0 -chrIV 1514297 1515069 HC_gene_1641_tx_1 2 + 1514297 1515069 . 1 773 0 -chrIV 1515734 1516446 HC_gene_2236_tx_1 1 - 1515734 1516446 . 1 713 0 -chrIV 1515848 1516446 HC_gene_2236_tx_2 1 - 1515848 1516446 . 1 599 0 -chrIV 1516593 1517711 MC_gene_1642_tx_1 1 + 1516593 1517711 . 2 359,719 0,400 -chrIV 1516743 1517759 HC_gene_2237_tx_1 1 - 1516743 1517759 . 1 1017 0 -chrIV 1516832 1517759 HC_gene_2237_tx_2 5 - 1516832 1517759 . 1 928 0 -chrIV 1516832 1517759 HC_gene_2237_tx_3 1 - 1516832 1517759 . 2 92,767 0,161 -chrIV 1516832 1518010 HC_gene_2238_tx_1 1 - 1516832 1518010 . 1 1179 0 -chrIV 1516832 1518010 HC_gene_2238_tx_2 1 - 1516832 1518010 . 2 120,1018 0,161 -chrIV 1516916 1517921 HC_gene_2238_tx_3 1 - 1516916 1517921 . 1 1006 0 -chrIV 1517138 1517774 MC_gene_1643_tx_1 1 + 1517138 1517774 . 1 637 0 -chrIV 1518283 1518701 HC_gene_1644_tx_1 2 + 1518283 1518701 . 1 419 0 -chrIV 1518283 1518786 HC_gene_1644_tx_2 9 + 1518283 1518786 . 1 504 0 -chrIV 1519245 1520879 LC_gene_1645_tx_1 1 + 1519245 1520879 . 1 1635 0 -chrIV 1519464 1520809 HC_gene_2239_tx_1 6 - 1519464 1520809 . 1 1346 0 -chrIV 1519464 1520935 HC_gene_2239_tx_2 24 - 1519464 1520935 . 1 1472 0 -chrIV 1519464 1520935 HC_gene_2239_tx_3 1 - 1519464 1520935 . 2 139,1277 0,195 -chrIV 1521137 1521969 HC_gene_1646_tx_1 6 + 1521137 1521969 . 1 833 0 -chrIV 1521137 1522324 HC_gene_1646_tx_2 3 + 1521137 1522324 . 1 1188 0 -chrIV 1521137 1522421 HC_gene_1646_tx_3 4 + 1521137 1522421 . 1 1285 0 -chrIV 1521284 1522354 LC_gene_2240_tx_1 1 - 1521284 1522354 . 1 1071 0 -chrIV 1522658 1523758 LC_gene_1647_tx_1 1 + 1522658 1523758 . 1 1101 0 -chrIX 468 4368 LC_gene_4422_tx_1 1 - 468 4368 . 1 3901 0 -chrIX 19487 21332 LC_gene_4256_tx_1 1 + 19487 21332 . 1 1846 0 -chrIX 20351 21822 MC_gene_4423_tx_1 1 - 20351 21822 . 1 1472 0 -chrIX 22592 22913 HC_gene_4257_tx_1 5 + 22592 22913 . 1 322 0 -chrIX 22592 24166 HC_gene_4257_tx_2 1 + 22592 24166 . 1 1575 0 -chrIX 22592 24178 HC_gene_4257_tx_3 1 + 22592 24178 . 1 1587 0 -chrIX 22709 22913 HC_gene_4257_tx_17 2 + 22709 22913 . 1 205 0 -chrIX 22709 24161 HC_gene_4257_tx_4 8 + 22709 24161 . 1 1453 0 -chrIX 22709 24162 HC_gene_4257_tx_5 1 + 22709 24162 . 1 1454 0 -chrIX 22709 24163 HC_gene_4257_tx_6 1 + 22709 24163 . 1 1455 0 -chrIX 22709 24164 HC_gene_4257_tx_7 1 + 22709 24164 . 1 1456 0 -chrIX 22709 24164 HC_gene_4257_tx_8 1 + 22709 24164 . 2 148,240 0,1216 -chrIX 22709 24167 HC_gene_4257_tx_9 1 + 22709 24167 . 1 1459 0 -chrIX 22709 24172 HC_gene_4257_tx_10 1 + 22709 24172 . 1 1464 0 -chrIX 22709 24173 HC_gene_4257_tx_11 2 + 22709 24173 . 1 1465 0 -chrIX 22709 24174 HC_gene_4257_tx_12 1 + 22709 24174 . 1 1466 0 -chrIX 22709 24175 HC_gene_4257_tx_13 1 + 22709 24175 . 1 1467 0 -chrIX 22709 24178 HC_gene_4257_tx_14 2 + 22709 24178 . 1 1470 0 -chrIX 22709 24410 HC_gene_4257_tx_15 3 + 22709 24410 . 1 1702 0 -chrIX 22709 26361 HC_gene_4257_tx_18 1 + 22709 26361 . 1 3653 0 -chrIX 22709 26441 HC_gene_4257_tx_19 1 + 22709 26441 . 1 3733 0 -chrIX 22709 28142 HC_gene_4257_tx_20 1 + 22709 28142 . 1 5434 0 -chrIX 22709 28590 HC_gene_4257_tx_21 1 + 22709 28590 . 1 5882 0 -chrIX 22793 24161 HC_gene_4257_tx_16 1 + 22793 24161 . 1 1369 0 -chrIX 22833 26154 MC_gene_4424_tx_1 1 - 22833 26154 . 2 2433,790 0,2532 -chrIX 23696 24161 HC_gene_4257_tx_22 2 + 23696 24161 . 1 466 0 -chrIX 23696 24162 HC_gene_4257_tx_23 1 + 23696 24162 . 1 467 0 -chrIX 23696 24163 HC_gene_4257_tx_24 1 + 23696 24163 . 1 468 0 -chrIX 23696 24173 HC_gene_4257_tx_25 1 + 23696 24173 . 1 478 0 -chrIX 23696 24174 HC_gene_4257_tx_26 1 + 23696 24174 . 1 479 0 -chrIX 23696 24410 HC_gene_4257_tx_29 1 + 23696 24410 . 1 715 0 -chrIX 23765 24161 HC_gene_4257_tx_27 1 + 23765 24161 . 1 397 0 -chrIX 23765 24162 HC_gene_4257_tx_28 1 + 23765 24162 . 1 398 0 -chrIX 24018 24175 HC_gene_4257_tx_30 1 + 24018 24175 . 1 158 0 -chrIX 24018 24410 HC_gene_4257_tx_31 1 + 24018 24410 . 1 393 0 -chrIX 24911 27986 HC_gene_4257_tx_32 1 + 24911 27986 . 2 1448,1561 0,1515 -chrIX 24911 28590 HC_gene_4257_tx_33 1 + 24911 28590 . 1 3680 0 -chrIX 24967 26361 HC_gene_4257_tx_40 1 + 24967 26361 . 1 1395 0 -chrIX 24967 26452 HC_gene_4257_tx_41 1 + 24967 26452 . 1 1486 0 -chrIX 24967 28590 HC_gene_4257_tx_34 2 + 24967 28590 . 1 3624 0 -chrIX 25150 28177 HC_gene_4257_tx_35 1 + 25150 28177 . 1 3028 0 -chrIX 25211 26421 HC_gene_4257_tx_42 1 + 25211 26421 . 1 1211 0 -chrIX 25211 28177 HC_gene_4257_tx_36 1 + 25211 28177 . 1 2967 0 -chrIX 25318 26433 HC_gene_4257_tx_43 1 + 25318 26433 . 1 1116 0 -chrIX 25318 27160 HC_gene_4257_tx_44 3 + 25318 27160 . 1 1843 0 -chrIX 25318 28134 HC_gene_4257_tx_37 1 + 25318 28134 . 1 2817 0 -chrIX 25318 28199 HC_gene_4257_tx_38 1 + 25318 28199 . 1 2882 0 -chrIX 25318 28590 HC_gene_4257_tx_39 4 + 25318 28590 . 1 3273 0 -chrIX 26738 27986 HC_gene_4257_tx_45 1 + 26738 27986 . 1 1249 0 -chrIX 26738 28152 HC_gene_4257_tx_46 1 + 26738 28152 . 1 1415 0 -chrIX 26738 28590 HC_gene_4257_tx_47 1 + 26738 28590 . 2 1091,720 0,1133 -chrIX 27188 28114 HC_gene_4257_tx_48 1 + 27188 28114 . 1 927 0 -chrIX 27188 28320 HC_gene_4257_tx_49 1 + 27188 28320 . 1 1133 0 -chrIX 27188 28590 HC_gene_4257_tx_50 1 + 27188 28590 . 1 1403 0 -chrIX 28505 28817 MC_gene_4425_tx_1 1 - 28505 28817 . 1 313 0 -chrIX 28885 29867 HC_gene_4258_tx_1 1 + 28885 29867 . 1 983 0 -chrIX 28885 30374 HC_gene_4258_tx_2 3 + 28885 30374 . 1 1490 0 -chrIX 30317 30791 HC_gene_4426_tx_1 24 - 30317 30791 . 1 475 0 -chrIX 30317 31154 HC_gene_4426_tx_2 3 - 30317 31154 . 1 838 0 -chrIX 30317 31253 HC_gene_4426_tx_3 6 - 30317 31253 . 1 937 0 -chrIX 30317 31327 HC_gene_4426_tx_4 9 - 30317 31327 . 1 1011 0 -chrIX 31304 32343 HC_gene_4259_tx_1 1 + 31304 32343 . 1 1040 0 -chrIX 31304 32663 HC_gene_4259_tx_2 1 + 31304 32663 . 1 1360 0 -chrIX 33559 34757 HC_gene_4427_tx_1 50 - 33559 34757 . 1 1199 0 -chrIX 33559 34976 HC_gene_4427_tx_2 12 - 33559 34976 . 1 1418 0 -chrIX 34897 35482 HC_gene_4260_tx_1 2 + 34897 35482 . 1 586 0 -chrIX 34897 37309 HC_gene_4260_tx_2 1 + 34897 37309 . 1 2413 0 -chrIX 35114 35925 HC_gene_4428_tx_1 16 - 35114 35925 . 1 812 0 -chrIX 35165 35482 HC_gene_4260_tx_4 1 + 35165 35482 . 1 318 0 -chrIX 35165 37309 HC_gene_4260_tx_3 7 + 35165 37309 . 1 2145 0 -chrIX 36198 37267 LC_gene_4429_tx_1 1 - 36198 37267 . 1 1070 0 -chrIX 37438 39205 HC_gene_4261_tx_1 91 + 37438 39205 . 1 1768 0 -chrIX 37608 39205 HC_gene_4261_tx_2 6 + 37608 39205 . 1 1598 0 -chrIX 38147 39205 HC_gene_4261_tx_3 13 + 38147 39205 . 1 1059 0 -chrIX 39073 39439 HC_gene_4430_tx_1 6 - 39073 39439 . 1 367 0 -chrIX 39422 40177 HC_gene_4262_tx_1 35 + 39422 40177 . 1 756 0 -chrIX 39422 41509 HC_gene_4262_tx_2 4 + 39422 41509 . 1 2088 0 -chrIX 39677 40177 HC_gene_4262_tx_4 14 + 39677 40177 . 1 501 0 -chrIX 39677 41509 HC_gene_4262_tx_3 1 + 39677 41509 . 1 1833 0 -chrIX 40085 41468 MC_gene_4431_tx_1 1 - 40085 41468 . 1 1384 0 -chrIX 41785 46068 HC_gene_4263_tx_1 2 + 41785 46068 . 1 4284 0 -chrIX 45123 45923 MC_gene_4432_tx_1 1 - 45123 45923 . 1 801 0 -chrIX 46189 46931 HC_gene_4264_tx_1 114 + 46189 46931 . 1 743 0 -chrIX 46189 46931 HC_gene_4264_tx_2 1 + 46189 46931 . 2 595,101 0,642 -chrIX 46189 46931 HC_gene_4264_tx_3 1 + 46189 46931 . 2 136,562 0,181 -chrIX 46740 47333 HC_gene_4433_tx_1 21 - 46740 47333 . 1 594 0 -chrIX 46740 47407 HC_gene_4433_tx_2 3 - 46740 47407 . 1 668 0 -chrIX 46740 47552 HC_gene_4433_tx_3 94 - 46740 47552 . 1 813 0 -chrIX 46866 47333 HC_gene_4433_tx_5 2 - 46866 47333 . 1 468 0 -chrIX 46866 47552 HC_gene_4433_tx_4 11 - 46866 47552 . 1 687 0 -chrIX 47672 48041 HC_gene_4265_tx_1 5 + 47672 48041 . 1 370 0 -chrIX 47672 48042 HC_gene_4265_tx_2 2 + 47672 48042 . 1 371 0 -chrIX 47672 48043 HC_gene_4265_tx_3 1 + 47672 48043 . 2 31,279 0,93 -chrIX 47672 48043 HC_gene_4265_tx_4 19 + 47672 48043 . 1 372 0 -chrIX 47672 48044 HC_gene_4265_tx_5 3 + 47672 48044 . 1 373 0 -chrIX 47672 48045 HC_gene_4265_tx_6 1 + 47672 48045 . 1 374 0 -chrIX 47672 48046 HC_gene_4265_tx_7 6 + 47672 48046 . 1 375 0 -chrIX 47672 48047 HC_gene_4265_tx_8 2 + 47672 48047 . 1 376 0 -chrIX 47672 48048 HC_gene_4265_tx_9 1 + 47672 48048 . 1 377 0 -chrIX 47672 48049 HC_gene_4265_tx_10 12 + 47672 48049 . 1 378 0 -chrIX 47672 48051 HC_gene_4265_tx_11 2 + 47672 48051 . 1 380 0 -chrIX 47672 48052 HC_gene_4265_tx_12 1 + 47672 48052 . 1 381 0 -chrIX 47672 48053 HC_gene_4265_tx_13 1 + 47672 48053 . 1 382 0 -chrIX 47672 48054 HC_gene_4265_tx_14 1 + 47672 48054 . 1 383 0 -chrIX 47672 48055 HC_gene_4265_tx_15 3 + 47672 48055 . 1 384 0 -chrIX 47672 48056 HC_gene_4265_tx_16 16 + 47672 48056 . 1 385 0 -chrIX 47672 48057 HC_gene_4265_tx_17 1 + 47672 48057 . 1 386 0 -chrIX 47672 48058 HC_gene_4265_tx_18 4 + 47672 48058 . 1 387 0 -chrIX 47672 48062 HC_gene_4265_tx_19 8 + 47672 48062 . 1 391 0 -chrIX 47672 48063 HC_gene_4265_tx_20 6 + 47672 48063 . 1 392 0 -chrIX 47672 48064 HC_gene_4265_tx_21 4 + 47672 48064 . 1 393 0 -chrIX 47672 48065 HC_gene_4265_tx_22 4 + 47672 48065 . 1 394 0 -chrIX 47672 48067 HC_gene_4265_tx_23 1 + 47672 48067 . 1 396 0 -chrIX 47672 48068 HC_gene_4265_tx_24 13 + 47672 48068 . 1 397 0 -chrIX 47672 48069 HC_gene_4265_tx_25 1 + 47672 48069 . 1 398 0 -chrIX 47672 48070 HC_gene_4265_tx_26 3 + 47672 48070 . 1 399 0 -chrIX 47672 48072 HC_gene_4265_tx_27 8 + 47672 48072 . 1 401 0 -chrIX 47672 48073 HC_gene_4265_tx_28 3 + 47672 48073 . 1 402 0 -chrIX 47672 48074 HC_gene_4265_tx_29 1 + 47672 48074 . 1 403 0 -chrIX 47672 48075 HC_gene_4265_tx_30 4 + 47672 48075 . 1 404 0 -chrIX 47672 48077 HC_gene_4265_tx_31 2 + 47672 48077 . 1 406 0 -chrIX 47672 48078 HC_gene_4265_tx_32 1 + 47672 48078 . 1 407 0 -chrIX 47672 48081 HC_gene_4265_tx_33 3 + 47672 48081 . 1 410 0 -chrIX 47672 48084 HC_gene_4265_tx_34 4 + 47672 48084 . 1 413 0 -chrIX 47672 48086 HC_gene_4265_tx_35 1 + 47672 48086 . 1 415 0 -chrIX 47672 48090 HC_gene_4265_tx_36 1 + 47672 48090 . 1 419 0 -chrIX 47672 48093 HC_gene_4265_tx_37 1 + 47672 48093 . 1 422 0 -chrIX 47672 48095 HC_gene_4265_tx_38 1 + 47672 48095 . 1 424 0 -chrIX 47672 48096 HC_gene_4265_tx_39 1 + 47672 48096 . 1 425 0 -chrIX 47672 48098 HC_gene_4265_tx_40 2 + 47672 48098 . 1 427 0 -chrIX 47672 48126 HC_gene_4265_tx_41 1 + 47672 48126 . 1 455 0 -chrIX 47672 48130 HC_gene_4265_tx_42 1 + 47672 48130 . 1 459 0 -chrIX 47672 48149 HC_gene_4265_tx_43 1 + 47672 48149 . 1 478 0 -chrIX 47742 48101 HC_gene_4265_tx_44 1 + 47742 48101 . 1 360 0 -chrIX 48099 51515 HC_gene_4266_tx_1 2 + 48099 51515 . 1 3417 0 -chrIX 48547 51515 HC_gene_4266_tx_2 1 + 48547 51515 . 1 2969 0 -chrIX 51413 52612 HC_gene_4434_tx_1 3 - 51413 52612 . 1 1200 0 -chrIX 51413 53185 HC_gene_4434_tx_2 3 - 51413 53185 . 1 1773 0 -chrIX 53007 53899 LC_gene_4267_tx_1 1 + 53007 53899 . 1 893 0 -chrIX 53834 54312 HC_gene_4435_tx_1 1 - 53834 54312 . 1 479 0 -chrIX 53834 54420 HC_gene_4435_tx_2 2 - 53834 54420 . 1 587 0 -chrIX 53834 54545 HC_gene_4435_tx_3 1 - 53834 54545 . 1 712 0 -chrIX 53834 55034 HC_gene_4435_tx_10 1 - 53834 55034 . 1 1201 0 -chrIX 53834 55047 HC_gene_4435_tx_11 6 - 53834 55047 . 1 1214 0 -chrIX 53893 54312 HC_gene_4435_tx_4 12 - 53893 54312 . 1 420 0 -chrIX 53893 54420 HC_gene_4435_tx_5 3 - 53893 54420 . 1 528 0 -chrIX 53893 54545 HC_gene_4435_tx_6 3 - 53893 54545 . 1 653 0 -chrIX 53893 54545 HC_gene_4435_tx_7 1 - 53893 54545 . 2 397,165 0,488 -chrIX 53893 54607 HC_gene_4435_tx_8 5 - 53893 54607 . 1 715 0 -chrIX 53893 54768 HC_gene_4435_tx_9 6 - 53893 54768 . 1 876 0 -chrIX 53893 55047 HC_gene_4435_tx_12 43 - 53893 55047 . 1 1155 0 -chrIX 53893 55047 HC_gene_4435_tx_13 1 - 53893 55047 . 2 665,404 0,751 -chrIX 53893 55047 HC_gene_4435_tx_14 1 - 53893 55047 . 2 286,549 0,606 -chrIX 53998 54566 MC_gene_4268_tx_1 1 + 53998 54566 . 1 569 0 -chrIX 55176 56434 HC_gene_4269_tx_1 29 + 55176 56434 . 1 1259 0 -chrIX 55176 56434 HC_gene_4269_tx_2 1 + 55176 56434 . 2 624,538 0,721 -chrIX 55176 56434 HC_gene_4269_tx_3 1 + 55176 56434 . 2 128,723 0,536 -chrIX 55805 56434 HC_gene_4269_tx_4 8 + 55805 56434 . 1 630 0 -chrIX 56001 56434 HC_gene_4269_tx_5 3 + 56001 56434 . 1 434 0 -chrIX 56332 57160 MC_gene_4436_tx_1 1 - 56332 57160 . 1 829 0 -chrIX 56567 57382 HC_gene_4270_tx_1 43 + 56567 57382 . 1 816 0 -chrIX 56838 57382 HC_gene_4270_tx_2 5 + 56838 57382 . 1 545 0 -chrIX 56978 57382 HC_gene_4270_tx_3 5 + 56978 57382 . 1 405 0 -chrIX 57054 57382 HC_gene_4270_tx_4 5 + 57054 57382 . 1 329 0 -chrIX 57288 57629 HC_gene_4437_tx_1 10 - 57288 57629 . 1 342 0 -chrIX 57288 60506 HC_gene_4437_tx_2 1 - 57288 60506 . 1 3219 0 -chrIX 57288 60506 HC_gene_4437_tx_3 1 - 57288 60506 . 2 1476,1649 0,1570 -chrIX 57288 60840 HC_gene_4437_tx_4 3 - 57288 60840 . 1 3553 0 -chrIX 57288 60840 HC_gene_4437_tx_5 1 - 57288 60840 . 2 1144,2233 0,1320 -chrIX 60696 62760 HC_gene_4438_tx_1 1 - 60696 62760 . 1 2065 0 -chrIX 60958 62760 HC_gene_4438_tx_2 1 - 60958 62760 . 1 1803 0 -chrIX 62649 63046 MC_gene_4271_tx_1 1 + 62649 63046 . 1 398 0 -chrIX 62891 63169 HC_gene_4439_tx_1 9 - 62891 63169 . 1 279 0 -chrIX 62891 63507 HC_gene_4439_tx_2 13 - 62891 63507 . 1 617 0 -chrIX 62891 63852 HC_gene_4439_tx_3 4 - 62891 63852 . 1 962 0 -chrIX 62891 63978 HC_gene_4439_tx_4 11 - 62891 63978 . 1 1088 0 -chrIX 62891 64902 HC_gene_4439_tx_5 1 - 62891 64902 . 1 2012 0 -chrIX 62891 65256 HC_gene_4439_tx_6 1 - 62891 65256 . 1 2366 0 -chrIX 62891 67667 HC_gene_4439_tx_7 1 - 62891 67667 . 1 4777 0 -chrIX 62891 67781 HC_gene_4439_tx_8 1 - 62891 67781 . 1 4891 0 -chrIX 62891 68210 HC_gene_4439_tx_9 1 - 62891 68210 . 2 5052,159 0,5161 -chrIX 68692 69594 HC_gene_4272_tx_1 64 + 68692 69594 . 1 903 0 -chrIX 69137 69594 HC_gene_4272_tx_2 4510 + 69137 69594 . 1 458 0 -chrIX 69520 69972 HC_gene_4440_tx_1 8 - 69520 69972 . 1 453 0 -chrIX 69520 70626 HC_gene_4440_tx_2 3 - 69520 70626 . 1 1107 0 -chrIX 69520 70710 HC_gene_4440_tx_3 2 - 69520 70710 . 1 1191 0 -chrIX 69520 73573 HC_gene_4440_tx_4 1 - 69520 73573 . 2 562,2998 0,1056 -chrIX 69520 73632 HC_gene_4440_tx_5 3 - 69520 73632 . 1 4113 0 -chrIX 71612 74190 LC_gene_4273_tx_1 1 + 71612 74190 . 1 2579 0 -chrIX 73966 75963 HC_gene_4441_tx_1 1 - 73966 75963 . 1 1998 0 -chrIX 73966 76130 HC_gene_4441_tx_2 6 - 73966 76130 . 1 2165 0 -chrIX 75866 76126 HC_gene_4442_tx_1 1 - 75866 76126 . 1 261 0 -chrIX 75866 76130 HC_gene_4442_tx_2 1 - 75866 76130 . 1 265 0 -chrIX 75866 76146 HC_gene_4442_tx_3 1 - 75866 76146 . 1 281 0 -chrIX 75866 76899 HC_gene_4442_tx_4 2 - 75866 76899 . 1 1034 0 -chrIX 75866 77293 HC_gene_4442_tx_5 43 - 75866 77293 . 1 1428 0 -chrIX 75866 77293 HC_gene_4442_tx_6 1 - 75866 77293 . 2 868,312 0,1116 -chrIX 75866 77316 HC_gene_4442_tx_7 1 - 75866 77316 . 1 1451 0 -chrIX 75866 77323 HC_gene_4442_tx_8 1 - 75866 77323 . 1 1458 0 -chrIX 75866 77327 HC_gene_4442_tx_9 1 - 75866 77327 . 1 1462 0 -chrIX 76253 76899 HC_gene_4442_tx_10 2 - 76253 76899 . 1 647 0 -chrIX 76253 77293 HC_gene_4442_tx_15 4 - 76253 77293 . 1 1041 0 -chrIX 76254 77293 HC_gene_4442_tx_16 1 - 76254 77293 . 1 1040 0 -chrIX 76255 77293 HC_gene_4442_tx_17 1 - 76255 77293 . 1 1039 0 -chrIX 76256 76899 HC_gene_4442_tx_11 2 - 76256 76899 . 1 644 0 -chrIX 76256 77293 HC_gene_4442_tx_18 8 - 76256 77293 . 1 1038 0 -chrIX 76257 77293 HC_gene_4442_tx_19 2 - 76257 77293 . 1 1037 0 -chrIX 76258 77293 HC_gene_4442_tx_20 1 - 76258 77293 . 1 1036 0 -chrIX 76260 76899 HC_gene_4442_tx_12 1 - 76260 76899 . 1 640 0 -chrIX 76260 77293 HC_gene_4442_tx_21 3 - 76260 77293 . 1 1034 0 -chrIX 76261 77293 HC_gene_4442_tx_22 3 - 76261 77293 . 1 1033 0 -chrIX 76262 76899 HC_gene_4442_tx_13 1 - 76262 76899 . 1 638 0 -chrIX 76262 77293 HC_gene_4442_tx_23 1 - 76262 77293 . 1 1032 0 -chrIX 76264 77293 HC_gene_4442_tx_24 2 - 76264 77293 . 1 1030 0 -chrIX 76271 76899 HC_gene_4442_tx_14 1 - 76271 76899 . 1 629 0 -chrIX 76271 77293 HC_gene_4442_tx_25 1 - 76271 77293 . 1 1023 0 -chrIX 76272 77293 HC_gene_4442_tx_26 1 - 76272 77293 . 1 1022 0 -chrIX 76273 77293 HC_gene_4442_tx_27 2 - 76273 77293 . 1 1021 0 -chrIX 76274 77293 HC_gene_4442_tx_28 1 - 76274 77293 . 1 1020 0 -chrIX 76345 77337 MC_gene_4274_tx_1 1 + 76345 77337 . 1 993 0 -chrIX 77539 80355 HC_gene_4275_tx_1 1 + 77539 80355 . 1 2817 0 -chrIX 77539 80355 HC_gene_4275_tx_2 1 + 77539 80355 . 2 1162,1564 0,1253 -chrIX 77983 78849 HC_gene_4275_tx_8 1 + 77983 78849 . 1 867 0 -chrIX 77983 80201 HC_gene_4275_tx_3 3 + 77983 80201 . 1 2219 0 -chrIX 77983 80355 HC_gene_4275_tx_4 7 + 77983 80355 . 1 2373 0 -chrIX 77983 80355 HC_gene_4275_tx_5 1 + 77983 80355 . 2 2121,58 0,2315 -chrIX 78242 78849 HC_gene_4275_tx_9 1 + 78242 78849 . 1 608 0 -chrIX 78242 80201 HC_gene_4275_tx_6 2 + 78242 80201 . 1 1960 0 -chrIX 78242 80355 HC_gene_4275_tx_7 5 + 78242 80355 . 1 2114 0 -chrIX 78899 80355 HC_gene_4275_tx_10 6 + 78899 80355 . 1 1457 0 -chrIX 79127 80355 HC_gene_4275_tx_11 1 + 79127 80355 . 1 1229 0 -chrIX 79614 80201 HC_gene_4275_tx_12 1 + 79614 80201 . 1 588 0 -chrIX 79614 80355 HC_gene_4275_tx_13 5 + 79614 80355 . 1 742 0 -chrIX 79928 80201 HC_gene_4275_tx_14 1 + 79928 80201 . 1 274 0 -chrIX 79928 80355 HC_gene_4275_tx_15 3 + 79928 80355 . 1 428 0 -chrIX 80254 80643 HC_gene_4443_tx_1 7 - 80254 80643 . 1 390 0 -chrIX 80254 82396 HC_gene_4443_tx_2 4 - 80254 82396 . 1 2143 0 -chrIX 80254 83069 HC_gene_4443_tx_3 14 - 80254 83069 . 1 2816 0 -chrIX 81626 83069 HC_gene_4443_tx_4 1 - 81626 83069 . 1 1444 0 -chrIX 81743 83069 HC_gene_4443_tx_5 1 - 81743 83069 . 1 1327 0 -chrIX 81759 82396 HC_gene_4443_tx_9 1 - 81759 82396 . 1 638 0 -chrIX 81761 83069 HC_gene_4443_tx_6 1 - 81761 83069 . 1 1309 0 -chrIX 81767 83069 HC_gene_4443_tx_7 1 - 81767 83069 . 1 1303 0 -chrIX 81770 83069 HC_gene_4443_tx_8 1 - 81770 83069 . 1 1300 0 -chrIX 83045 84736 LC_gene_4444_tx_1 1 - 83045 84736 . 1 1692 0 -chrIX 83264 84939 HC_gene_4276_tx_1 136 + 83264 84939 . 1 1676 0 -chrIX 83264 84939 HC_gene_4276_tx_2 1 + 83264 84939 . 3 372,1069,113 0,445,1563 -chrIX 83264 84939 HC_gene_4276_tx_3 1 + 83264 84939 . 2 393,1159 0,517 -chrIX 83264 84939 HC_gene_4276_tx_4 1 + 83264 84939 . 2 845,762 0,914 -chrIX 83264 84939 HC_gene_4276_tx_5 1 + 83264 84939 . 2 963,655 0,1021 -chrIX 83264 85040 HC_gene_4276_tx_6 3 + 83264 85040 . 1 1777 0 -chrIX 83427 84939 HC_gene_4276_tx_7 8 + 83427 84939 . 1 1513 0 -chrIX 83427 85040 HC_gene_4276_tx_8 1 + 83427 85040 . 2 1115,424 0,1190 -chrIX 83427 85040 HC_gene_4276_tx_9 1 + 83427 85040 . 1 1614 0 -chrIX 83902 84939 HC_gene_4276_tx_10 15 + 83902 84939 . 1 1038 0 -chrIX 84268 84939 HC_gene_4276_tx_11 21 + 84268 84939 . 1 672 0 -chrIX 84595 84939 HC_gene_4276_tx_12 50 + 84595 84939 . 1 345 0 -chrIX 84595 85040 HC_gene_4276_tx_13 1 + 84595 85040 . 1 446 0 -chrIX 84913 85904 MC_gene_4445_tx_1 1 - 84913 85904 . 1 992 0 -chrIX 85255 87969 HC_gene_4277_tx_1 10 + 85255 87969 . 1 2715 0 -chrIX 86055 87969 HC_gene_4277_tx_2 1 + 86055 87969 . 1 1915 0 -chrIX 86453 87969 HC_gene_4277_tx_3 5 + 86453 87969 . 1 1517 0 -chrIX 87758 87969 HC_gene_4277_tx_4 8 + 87758 87969 . 1 212 0 -chrIX 87838 88393 MC_gene_4446_tx_1 1 - 87838 88393 . 1 556 0 -chrIX 87995 88574 MC_gene_4278_tx_1 1 + 87995 88574 . 1 580 0 -chrIX 88185 88703 MC_gene_4279_tx_1 1 + 88185 88703 . 1 519 0 -chrIX 88611 89166 HC_gene_4447_tx_1 1 - 88611 89166 . 1 556 0 -chrIX 88611 89502 HC_gene_4447_tx_2 1 - 88611 89502 . 1 892 0 -chrIX 88611 89726 HC_gene_4447_tx_3 3 - 88611 89726 . 1 1116 0 -chrIX 88883 89166 HC_gene_4447_tx_4 15 - 88883 89166 . 1 284 0 -chrIX 88883 89356 HC_gene_4447_tx_5 19 - 88883 89356 . 1 474 0 -chrIX 88883 89502 HC_gene_4447_tx_6 50 - 88883 89502 . 1 620 0 -chrIX 88883 89726 HC_gene_4447_tx_7 265 - 88883 89726 . 1 844 0 -chrIX 88883 89726 HC_gene_4447_tx_8 1 - 88883 89726 . 2 676,83 0,761 -chrIX 88883 89726 HC_gene_4447_tx_9 1 - 88883 89726 . 2 111,639 0,205 -chrIX 88914 89360 MC_gene_4280_tx_1 1 + 88914 89360 . 1 447 0 -chrIX 89868 92838 HC_gene_4448_tx_1 10 - 89868 92838 . 1 2971 0 -chrIX 89868 92838 HC_gene_4448_tx_2 1 - 89868 92838 . 2 567,2282 0,689 -chrIX 92578 93156 MC_gene_4281_tx_1 1 + 92578 93156 . 1 579 0 -chrIX 93084 93440 HC_gene_4449_tx_1 3 - 93084 93440 . 1 357 0 -chrIX 93084 93764 HC_gene_4449_tx_2 2 - 93084 93764 . 1 681 0 -chrIX 93354 94900 HC_gene_4282_tx_1 1 + 93354 94900 . 1 1547 0 -chrIX 93354 95012 HC_gene_4282_tx_2 1 + 93354 95012 . 1 1659 0 -chrIX 93590 94900 HC_gene_4282_tx_3 36 + 93590 94900 . 1 1311 0 -chrIX 93590 94900 HC_gene_4282_tx_4 1 + 93590 94900 . 2 69,1162 0,149 -chrIX 93590 94900 HC_gene_4282_tx_5 1 + 93590 94900 . 2 62,1021 0,290 -chrIX 93590 95012 HC_gene_4282_tx_6 8 + 93590 95012 . 1 1423 0 -chrIX 93719 94900 HC_gene_4282_tx_7 3 + 93719 94900 . 1 1182 0 -chrIX 93719 95012 HC_gene_4282_tx_8 2 + 93719 95012 . 1 1294 0 -chrIX 93980 94900 HC_gene_4282_tx_9 13 + 93980 94900 . 1 921 0 -chrIX 93980 95012 HC_gene_4282_tx_10 2 + 93980 95012 . 1 1033 0 -chrIX 94110 94900 HC_gene_4282_tx_11 8 + 94110 94900 . 1 791 0 -chrIX 94110 95012 HC_gene_4282_tx_12 1 + 94110 95012 . 1 903 0 -chrIX 94241 94900 HC_gene_4282_tx_13 53 + 94241 94900 . 1 660 0 -chrIX 94241 95012 HC_gene_4282_tx_14 13 + 94241 95012 . 1 772 0 -chrIX 94241 95012 HC_gene_4282_tx_15 1 + 94241 95012 . 2 210,500 0,272 -chrIX 94908 95320 HC_gene_4450_tx_1 8 - 94908 95320 . 1 413 0 -chrIX 94908 95517 HC_gene_4450_tx_2 3 - 94908 95517 . 1 610 0 -chrIX 94908 95779 HC_gene_4450_tx_3 5 - 94908 95779 . 1 872 0 -chrIX 94908 95779 HC_gene_4450_tx_4 1 - 94908 95779 . 2 640,170 0,702 -chrIX 94908 96151 HC_gene_4450_tx_5 5 - 94908 96151 . 1 1244 0 -chrIX 94908 96434 HC_gene_4450_tx_6 28 - 94908 96434 . 1 1527 0 -chrIX 96855 97245 HC_gene_4283_tx_1 1 + 96855 97245 . 1 391 0 -chrIX 96855 97246 HC_gene_4283_tx_2 2 + 96855 97246 . 1 392 0 -chrIX 96855 97249 HC_gene_4283_tx_3 1 + 96855 97249 . 1 395 0 -chrIX 96855 97393 HC_gene_4283_tx_8 5 + 96855 97393 . 1 539 0 -chrIX 96855 98422 HC_gene_4283_tx_10 1 + 96855 98422 . 1 1568 0 -chrIX 96858 97227 HC_gene_4283_tx_4 1 + 96858 97227 . 1 370 0 -chrIX 96858 97240 HC_gene_4283_tx_5 1 + 96858 97240 . 1 383 0 -chrIX 96862 97229 HC_gene_4283_tx_6 1 + 96862 97229 . 1 368 0 -chrIX 96876 97238 HC_gene_4283_tx_7 1 + 96876 97238 . 1 363 0 -chrIX 96876 97393 HC_gene_4283_tx_9 1 + 96876 97393 . 1 518 0 -chrIX 96981 97249 HC_gene_4283_tx_11 1 + 96981 97249 . 1 269 0 -chrIX 96981 97393 HC_gene_4283_tx_12 6 + 96981 97393 . 1 413 0 -chrIX 97147 98292 MC_gene_4451_tx_1 1 - 97147 98292 . 1 1146 0 -chrIX 97223 98422 HC_gene_4283_tx_13 2 + 97223 98422 . 1 1200 0 -chrIX 97370 98422 HC_gene_4283_tx_14 15 + 97370 98422 . 1 1053 0 -chrIX 98304 98835 HC_gene_4452_tx_1 505 - 98304 98835 . 1 532 0 -chrIX 98304 98926 HC_gene_4452_tx_2 138 - 98304 98926 . 1 623 0 -chrIX 98304 99089 HC_gene_4452_tx_3 748 - 98304 99089 . 1 786 0 -chrIX 98304 99435 HC_gene_4452_tx_4 1479 - 98304 99435 . 2 792,50 0,1082 -chrIX 98304 99435 HC_gene_4452_tx_5 54 - 98304 99435 . 1 1132 0 -chrIX 98304 99435 HC_gene_4452_tx_6 77 - 98304 99435 . 2 792,54 0,1078 -chrIX 98304 99435 HC_gene_4452_tx_7 9 - 98304 99435 . 2 787,54 0,1078 -chrIX 98304 99435 HC_gene_4452_tx_8 9 - 98304 99435 . 2 777,54 0,1078 -chrIX 98304 99435 HC_gene_4452_tx_9 13 - 98304 99435 . 2 787,50 0,1082 -chrIX 100004 100314 HC_gene_4284_tx_1 2 + 100004 100314 . 1 311 0 -chrIX 100657 102311 HC_gene_4453_tx_1 26 - 100657 102311 . 1 1655 0 -chrIX 102179 102504 LC_gene_4285_tx_1 1 + 102179 102504 . 1 326 0 -chrIX 102645 104452 HC_gene_4286_tx_1 1 + 102645 104452 . 1 1808 0 -chrIX 105167 105835 HC_gene_4287_tx_1 17 + 105167 105835 . 1 669 0 -chrIX 105167 105835 HC_gene_4287_tx_2 1 + 105167 105835 . 2 559,68 0,601 -chrIX 105270 105835 HC_gene_4287_tx_3 33 + 105270 105835 . 1 566 0 -chrIX 105706 109690 HC_gene_4454_tx_1 1 - 105706 109690 . 1 3985 0 -chrIX 105947 109690 HC_gene_4454_tx_2 1 - 105947 109690 . 1 3744 0 -chrIX 110973 112939 MC_gene_4455_tx_1 1 - 110973 112939 . 1 1967 0 -chrIX 113652 116100 LC_gene_4456_tx_1 1 - 113652 116100 . 1 2449 0 -chrIX 113729 115718 HC_gene_4288_tx_1 1 + 113729 115718 . 1 1990 0 -chrIX 113729 117020 HC_gene_4288_tx_2 11 + 113729 117020 . 1 3292 0 -chrIX 113729 117134 HC_gene_4288_tx_3 1 + 113729 117134 . 1 3406 0 -chrIX 116936 117516 HC_gene_4457_tx_1 34 - 116936 117516 . 1 581 0 -chrIX 116936 117669 HC_gene_4457_tx_2 127 - 116936 117669 . 1 734 0 -chrIX 116936 117669 HC_gene_4457_tx_3 1 - 116936 117669 . 2 614,70 0,664 -chrIX 116936 117669 HC_gene_4457_tx_4 1 - 116936 117669 . 2 531,66 0,668 -chrIX 117931 122212 HC_gene_4289_tx_1 7 + 117931 122212 . 1 4282 0 -chrIX 117931 122212 HC_gene_4289_tx_2 1 + 117931 122212 . 2 1729,2497 0,1785 -chrIX 117931 122212 HC_gene_4289_tx_3 1 + 117931 122212 . 3 689,3274,61 0,871,4221 -chrIX 117931 122212 HC_gene_4289_tx_4 1 + 117931 122212 . 2 1181,3014 0,1268 -chrIX 120421 122212 HC_gene_4289_tx_5 1 + 120421 122212 . 2 1598,61 0,1731 -chrIX 120421 122212 HC_gene_4289_tx_6 5 + 120421 122212 . 1 1792 0 -chrIX 120800 122212 HC_gene_4289_tx_7 9 + 120800 122212 . 1 1413 0 -chrIX 120800 122212 HC_gene_4289_tx_8 1 + 120800 122212 . 2 1219,55 0,1358 -chrIX 120800 122212 HC_gene_4289_tx_9 1 + 120800 122212 . 2 128,588 0,825 -chrIX 121036 122212 HC_gene_4289_tx_10 1 + 121036 122212 . 2 1028,55 0,1122 -chrIX 121036 122212 HC_gene_4289_tx_11 8 + 121036 122212 . 1 1177 0 -chrIX 121205 122144 HC_gene_4289_tx_12 1 + 121205 122144 . 1 940 0 -chrIX 121205 122212 HC_gene_4289_tx_13 14 + 121205 122212 . 1 1008 0 -chrIX 121205 122212 HC_gene_4289_tx_14 1 + 121205 122212 . 2 863,74 0,934 -chrIX 121205 122212 HC_gene_4289_tx_15 1 + 121205 122212 . 2 448,506 0,502 -chrIX 121435 122212 HC_gene_4289_tx_16 11 + 121435 122212 . 1 778 0 -chrIX 121522 122212 HC_gene_4289_tx_17 21 + 121522 122212 . 1 691 0 -chrIX 122413 125819 HC_gene_4290_tx_1 2 + 122413 125819 . 1 3407 0 -chrIX 122413 125991 HC_gene_4290_tx_2 22 + 122413 125991 . 1 3579 0 -chrIX 122413 125991 HC_gene_4290_tx_3 1 + 122413 125991 . 3 1436,1217,773 0,1529,2806 -chrIX 122792 125991 HC_gene_4290_tx_4 3 + 122792 125991 . 1 3200 0 -chrIX 123926 125819 HC_gene_4290_tx_5 1 + 123926 125819 . 1 1894 0 -chrIX 123926 125991 HC_gene_4290_tx_6 5 + 123926 125991 . 1 2066 0 -chrIX 125030 125819 HC_gene_4290_tx_7 1 + 125030 125819 . 1 790 0 -chrIX 125030 125991 HC_gene_4290_tx_8 5 + 125030 125991 . 1 962 0 -chrIX 125296 125819 HC_gene_4290_tx_9 3 + 125296 125819 . 1 524 0 -chrIX 125296 125991 HC_gene_4290_tx_10 9 + 125296 125991 . 1 696 0 -chrIX 125381 125991 HC_gene_4290_tx_11 11 + 125381 125991 . 1 611 0 -chrIX 125432 125920 MC_gene_4458_tx_1 1 - 125432 125920 . 1 489 0 -chrIX 125874 126935 LC_gene_4459_tx_1 1 - 125874 126935 . 1 1062 0 -chrIX 126145 127199 HC_gene_4291_tx_1 151 + 126145 127199 . 1 1055 0 -chrIX 126643 127199 HC_gene_4291_tx_2 12 + 126643 127199 . 1 557 0 -chrIX 126768 127199 HC_gene_4291_tx_3 15 + 126768 127199 . 1 432 0 -chrIX 126915 127199 HC_gene_4291_tx_4 23 + 126915 127199 . 1 285 0 -chrIX 127038 127544 HC_gene_4460_tx_1 1 - 127038 127544 . 1 507 0 -chrIX 127422 127750 HC_gene_4461_tx_1 1 - 127422 127750 . 1 329 0 -chrIX 127439 129919 HC_gene_4292_tx_1 86 + 127439 129919 . 2 223,1771 0,710 -chrIX 127439 129919 HC_gene_4292_tx_2 1 + 127439 129919 . 2 207,1652 0,829 -chrIX 127439 129919 HC_gene_4292_tx_3 1 + 127439 129919 . 2 130,1746 0,735 -chrIX 127439 129919 HC_gene_4292_tx_4 1 + 127439 129919 . 2 263,1215 0,1266 -chrIX 127439 129919 HC_gene_4292_tx_5 1 + 127439 129919 . 3 223,304,717 0,710,1764 -chrIX 127439 129919 HC_gene_4292_tx_6 4 + 127439 129919 . 1 2481 0 -chrIX 127439 129919 HC_gene_4292_tx_7 1 + 127439 129919 . 2 130,1703 0,778 -chrIX 127439 129919 HC_gene_4292_tx_8 1 + 127439 129919 . 2 62,1608 0,873 -chrIX 127439 129919 HC_gene_4292_tx_9 1 + 127439 129919 . 2 130,1347 0,1134 -chrIX 127439 129919 HC_gene_4292_tx_10 1 + 127439 129919 . 2 246,1808 0,673 -chrIX 127439 129919 HC_gene_4292_tx_11 1 + 127439 129919 . 3 120,332,818 0,1245,1663 -chrIX 127439 129919 HC_gene_4292_tx_12 1 + 127439 129919 . 2 116,1474 0,1007 -chrIX 127439 129919 HC_gene_4292_tx_13 1 + 127439 129919 . 2 130,1478 0,1003 -chrIX 127439 129919 HC_gene_4292_tx_14 1 + 127439 129919 . 2 116,1230 0,1251 -chrIX 127439 129919 HC_gene_4292_tx_15 1 + 127439 129919 . 3 223,504,1207 0,710,1274 -chrIX 127439 131818 HC_gene_4292_tx_38 1 + 127439 131818 . 2 223,3670 0,710 -chrIX 127450 129919 HC_gene_4292_tx_16 1 + 127450 129919 . 2 130,1372 0,1098 -chrIX 127570 129919 HC_gene_4292_tx_17 6 + 127570 129919 . 2 92,1771 0,579 -chrIX 127570 129919 HC_gene_4292_tx_18 1 + 127570 129919 . 3 111,476,1215 0,604,1135 -chrIX 127570 129919 HC_gene_4292_tx_19 1 + 127570 129919 . 2 1080,1207 0,1143 -chrIX 127721 129919 HC_gene_4292_tx_20 1 + 127721 129919 . 2 1379,565 0,1634 -chrIX 128087 129919 HC_gene_4292_tx_21 1 + 128087 129919 . 2 8,1372 0,461 -chrIX 128094 129919 HC_gene_4292_tx_22 76 + 128094 129919 . 1 1826 0 -chrIX 128094 129919 HC_gene_4292_tx_23 1 + 128094 129919 . 2 580,1191 0,635 -chrIX 128094 129919 HC_gene_4292_tx_24 1 + 128094 129919 . 3 138,579,594 0,602,1232 -chrIX 128094 129919 HC_gene_4292_tx_25 1 + 128094 129919 . 2 138,883 0,943 -chrIX 128094 129919 HC_gene_4292_tx_26 1 + 128094 129919 . 2 403,1347 0,479 -chrIX 128094 129919 HC_gene_4292_tx_27 1 + 128094 129919 . 2 341,1040 0,786 -chrIX 128257 129919 HC_gene_4292_tx_28 1 + 128257 129919 . 2 69,1347 0,316 -chrIX 128257 129919 HC_gene_4292_tx_29 28 + 128257 129919 . 1 1663 0 -chrIX 128257 129919 HC_gene_4292_tx_30 1 + 128257 129919 . 2 1200,372 0,1291 -chrIX 128257 129919 HC_gene_4292_tx_31 1 + 128257 129919 . 2 429,1151 0,512 -chrIX 128405 129919 HC_gene_4292_tx_32 46 + 128405 129919 . 1 1515 0 -chrIX 128405 129919 HC_gene_4292_tx_33 1 + 128405 129919 . 2 245,1215 0,300 -chrIX 128405 129919 HC_gene_4292_tx_34 1 + 128405 129919 . 2 360,1088 0,427 -chrIX 128505 129919 HC_gene_4292_tx_35 139 + 128505 129919 . 1 1415 0 -chrIX 128505 129919 HC_gene_4292_tx_36 1 + 128505 129919 . 2 133,1215 0,200 -chrIX 128505 129919 HC_gene_4292_tx_37 1 + 128505 129919 . 2 572,675 0,740 -chrIX 128505 131818 HC_gene_4292_tx_39 1 + 128505 131818 . 1 3314 0 -chrIX 128835 129786 MC_gene_4462_tx_1 1 - 128835 129786 . 1 952 0 -chrIX 129024 129919 HC_gene_4292_tx_40 36 + 129024 129919 . 1 896 0 -chrIX 129197 129919 HC_gene_4292_tx_41 53 + 129197 129919 . 1 723 0 -chrIX 129197 129919 HC_gene_4292_tx_42 1 + 129197 129919 . 2 282,333 0,390 -chrIX 129253 129919 HC_gene_4292_tx_43 9 + 129253 129919 . 1 667 0 -chrIX 129311 129919 HC_gene_4292_tx_44 66 + 129311 129919 . 1 609 0 -chrIX 129311 129919 HC_gene_4292_tx_45 1 + 129311 129919 . 2 212,292 0,317 -chrIX 129587 129919 HC_gene_4292_tx_46 115 + 129587 129919 . 1 333 0 -chrIX 130352 131818 HC_gene_4292_tx_47 22 + 130352 131818 . 1 1467 0 -chrIX 130526 131818 HC_gene_4292_tx_48 3 + 130526 131818 . 1 1293 0 -chrIX 130578 131818 HC_gene_4292_tx_49 6 + 130578 131818 . 1 1241 0 -chrIX 132105 135299 HC_gene_4463_tx_1 1 - 132105 135299 . 1 3195 0 -chrIX 132218 134044 HC_gene_4293_tx_1 56 + 132218 134044 . 1 1827 0 -chrIX 132218 134044 HC_gene_4293_tx_2 1 + 132218 134044 . 2 104,1134 0,693 -chrIX 132218 134044 HC_gene_4293_tx_3 1 + 132218 134044 . 2 890,816 0,1011 -chrIX 132218 134044 HC_gene_4293_tx_4 1 + 132218 134044 . 2 884,842 0,985 -chrIX 132218 134044 HC_gene_4293_tx_5 1 + 132218 134044 . 2 116,1603 0,224 -chrIX 132598 134044 HC_gene_4293_tx_6 14 + 132598 134044 . 1 1447 0 -chrIX 132770 134044 HC_gene_4293_tx_7 11 + 132770 134044 . 1 1275 0 -chrIX 132770 134178 HC_gene_4293_tx_8 1 + 132770 134178 . 1 1409 0 -chrIX 132981 134044 HC_gene_4293_tx_9 6 + 132981 134044 . 1 1064 0 -chrIX 133256 134044 HC_gene_4293_tx_10 1 + 133256 134044 . 2 371,377 0,412 -chrIX 133256 134044 HC_gene_4293_tx_11 10 + 133256 134044 . 1 789 0 -chrIX 135262 136195 HC_gene_4294_tx_1 9 + 135262 136195 . 1 934 0 -chrIX 135381 136195 HC_gene_4294_tx_2 8 + 135381 136195 . 1 815 0 -chrIX 135482 136037 MC_gene_4464_tx_1 1 - 135482 136037 . 1 556 0 -chrIX 136128 136461 HC_gene_4465_tx_1 2 - 136128 136461 . 1 334 0 -chrIX 136128 136865 HC_gene_4465_tx_2 10 - 136128 136865 . 1 738 0 -chrIX 136128 138079 HC_gene_4465_tx_3 3 - 136128 138079 . 1 1952 0 -chrIX 136383 136865 HC_gene_4465_tx_8 1 - 136383 136865 . 1 483 0 -chrIX 136383 138079 HC_gene_4465_tx_4 11 - 136383 138079 . 1 1697 0 -chrIX 136402 136859 HC_gene_4295_tx_1 1 + 136402 136859 . 1 458 0 -chrIX 136402 137217 HC_gene_4295_tx_2 1 + 136402 137217 . 1 816 0 -chrIX 136496 136859 HC_gene_4295_tx_4 1 + 136496 136859 . 1 364 0 -chrIX 136496 137217 HC_gene_4295_tx_3 2 + 136496 137217 . 1 722 0 -chrIX 136507 138079 HC_gene_4465_tx_5 1 - 136507 138079 . 2 669,844 0,729 -chrIX 136507 138079 HC_gene_4465_tx_6 3 - 136507 138079 . 1 1573 0 -chrIX 136507 138079 HC_gene_4465_tx_7 1 - 136507 138079 . 2 598,868 0,705 -chrIX 137209 138247 LC_gene_4296_tx_1 1 + 137209 138247 . 2 483,463 0,576 -chrIX 138575 139188 LC_gene_4297_tx_1 1 + 138575 139188 . 1 614 0 -chrIX 139158 140569 LC_gene_4466_tx_1 1 - 139158 140569 . 1 1412 0 -chrIX 139438 140551 HC_gene_4298_tx_1 1 + 139438 140551 . 1 1114 0 -chrIX 139438 140627 HC_gene_4298_tx_2 2 + 139438 140627 . 1 1190 0 -chrIX 139633 140551 HC_gene_4298_tx_3 117 + 139633 140551 . 1 919 0 -chrIX 139633 140627 HC_gene_4298_tx_4 80 + 139633 140627 . 1 995 0 -chrIX 139633 140627 HC_gene_4298_tx_5 1 + 139633 140627 . 2 348,532 0,463 -chrIX 139633 141005 HC_gene_4298_tx_6 1 + 139633 141005 . 1 1373 0 -chrIX 139943 140551 HC_gene_4298_tx_7 10 + 139943 140551 . 1 609 0 -chrIX 139943 140627 HC_gene_4298_tx_8 6 + 139943 140627 . 1 685 0 -chrIX 140112 140551 HC_gene_4298_tx_9 11 + 140112 140551 . 1 440 0 -chrIX 140112 140627 HC_gene_4298_tx_10 18 + 140112 140627 . 1 516 0 -chrIX 140300 140551 HC_gene_4298_tx_11 6 + 140300 140551 . 1 252 0 -chrIX 140300 140627 HC_gene_4298_tx_12 20 + 140300 140627 . 1 328 0 -chrIX 140300 141005 HC_gene_4298_tx_13 1 + 140300 141005 . 1 706 0 -chrIX 140493 141128 HC_gene_4467_tx_1 17 - 140493 141128 . 1 636 0 -chrIX 140493 141188 HC_gene_4467_tx_2 9 - 140493 141188 . 1 696 0 -chrIX 140493 141283 HC_gene_4467_tx_3 17 - 140493 141283 . 1 791 0 -chrIX 140493 141636 HC_gene_4467_tx_4 125 - 140493 141636 . 1 1144 0 -chrIX 140493 141636 HC_gene_4467_tx_5 1 - 140493 141636 . 2 809,73 0,1071 -chrIX 140493 141636 HC_gene_4467_tx_6 1 - 140493 141636 . 2 141,935 0,209 -chrIX 141272 141775 LC_gene_4299_tx_1 1 + 141272 141775 . 1 504 0 -chrIX 142182 142521 LC_gene_4300_tx_1 1 + 142182 142521 . 1 340 0 -chrIX 142890 144211 HC_gene_4301_tx_1 1 + 142890 144211 . 2 803,433 0,889 -chrIX 142890 144211 HC_gene_4301_tx_2 77 + 142890 144211 . 1 1322 0 -chrIX 142890 144211 HC_gene_4301_tx_3 1 + 142890 144211 . 2 36,1159 0,163 -chrIX 142890 144211 HC_gene_4301_tx_4 1 + 142890 144211 . 2 273,581 0,741 -chrIX 142890 144211 HC_gene_4301_tx_5 1 + 142890 144211 . 2 248,881 0,441 -chrIX 142890 144211 HC_gene_4301_tx_6 1 + 142890 144211 . 2 269,647 0,675 -chrIX 142890 144211 HC_gene_4301_tx_7 1 + 142890 144211 . 2 234,767 0,555 -chrIX 142890 144211 HC_gene_4301_tx_8 1 + 142890 144211 . 2 269,868 0,454 -chrIX 142890 144211 HC_gene_4301_tx_9 1 + 142890 144211 . 2 256,613 0,709 -chrIX 142890 144211 HC_gene_4301_tx_10 1 + 142890 144211 . 2 68,894 0,428 -chrIX 142890 144211 HC_gene_4301_tx_11 1 + 142890 144211 . 2 269,516 0,806 -chrIX 143011 144211 HC_gene_4301_tx_12 10 + 143011 144211 . 1 1201 0 -chrIX 143206 144211 HC_gene_4301_tx_13 66 + 143206 144211 . 1 1006 0 -chrIX 143514 144211 HC_gene_4301_tx_14 35 + 143514 144211 . 1 698 0 -chrIX 143635 144211 HC_gene_4301_tx_15 36 + 143635 144211 . 1 577 0 -chrIX 144072 145942 HC_gene_4468_tx_1 1 - 144072 145942 . 2 555,1180 0,691 -chrIX 144269 145942 HC_gene_4468_tx_2 11 - 144269 145942 . 1 1674 0 -chrIX 144269 145942 HC_gene_4468_tx_3 1 - 144269 145942 . 2 731,892 0,782 -chrIX 144269 146262 HC_gene_4468_tx_4 1 - 144269 146262 . 1 1994 0 -chrIX 147190 148830 LC_gene_4302_tx_1 1 + 147190 148830 . 1 1641 0 -chrIX 147582 148889 HC_gene_4469_tx_1 2 - 147582 148889 . 1 1308 0 -chrIX 148976 149513 HC_gene_4470_tx_1 2 - 148976 149513 . 1 538 0 -chrIX 148976 149786 HC_gene_4470_tx_3 2 - 148976 149786 . 1 811 0 -chrIX 148976 150018 HC_gene_4470_tx_5 11 - 148976 150018 . 1 1043 0 -chrIX 148976 150142 HC_gene_4470_tx_6 3 - 148976 150142 . 1 1167 0 -chrIX 149072 149513 HC_gene_4470_tx_2 4 - 149072 149513 . 1 442 0 -chrIX 149072 149786 HC_gene_4470_tx_4 5 - 149072 149786 . 1 715 0 -chrIX 149072 150018 HC_gene_4470_tx_7 35 - 149072 150018 . 1 947 0 -chrIX 149072 150142 HC_gene_4470_tx_8 5 - 149072 150142 . 1 1071 0 -chrIX 150307 151294 MC_gene_4303_tx_1 1 + 150307 151294 . 1 988 0 -chrIX 150492 151350 MC_gene_4471_tx_1 1 - 150492 151350 . 1 859 0 -chrIX 150526 151490 MC_gene_4304_tx_1 1 + 150526 151490 . 1 965 0 -chrIX 151562 154978 HC_gene_4305_tx_1 1 + 151562 154978 . 2 1865,1474 0,1943 -chrIX 151562 154978 HC_gene_4305_tx_2 2 + 151562 154978 . 1 3417 0 -chrIX 151562 155167 HC_gene_4305_tx_3 1 + 151562 155167 . 1 3606 0 -chrIX 151562 155799 HC_gene_4305_tx_4 1 + 151562 155799 . 2 3665,489 0,3749 -chrIX 151755 155167 HC_gene_4305_tx_5 1 + 151755 155167 . 1 3413 0 -chrIX 151902 155167 HC_gene_4305_tx_6 1 + 151902 155167 . 1 3266 0 -chrIX 153770 154978 HC_gene_4305_tx_7 7 + 153770 154978 . 1 1209 0 -chrIX 153770 155167 HC_gene_4305_tx_8 1 + 153770 155167 . 1 1398 0 -chrIX 153938 154978 HC_gene_4305_tx_9 6 + 153938 154978 . 1 1041 0 -chrIX 153938 155167 HC_gene_4305_tx_10 1 + 153938 155167 . 1 1230 0 -chrIX 154235 154600 HC_gene_4472_tx_1 7 - 154235 154600 . 1 366 0 -chrIX 154235 154725 HC_gene_4472_tx_2 2 - 154235 154725 . 1 491 0 -chrIX 154235 154818 HC_gene_4472_tx_3 37 - 154235 154818 . 1 584 0 -chrIX 154864 155026 MC_gene_4473_tx_1 1 - 154864 155026 . 1 163 0 -chrIX 154937 155799 HC_gene_4305_tx_11 1 + 154937 155799 . 2 290,489 0,374 -chrIX 154937 155799 HC_gene_4305_tx_12 1 + 154937 155799 . 1 863 0 -chrIX 155089 155862 HC_gene_4474_tx_1 3 - 155089 155862 . 1 774 0 -chrIX 155190 155799 HC_gene_4305_tx_13 276 + 155190 155799 . 1 610 0 -chrIX 155190 155799 HC_gene_4305_tx_14 6 + 155190 155799 . 2 37,489 0,121 -chrIX 155190 155799 HC_gene_4305_tx_15 3 + 155190 155799 . 2 49,459 0,151 -chrIX 155190 155799 HC_gene_4305_tx_16 2 + 155190 155799 . 2 49,470 0,140 -chrIX 155190 155988 HC_gene_4305_tx_17 40 + 155190 155988 . 1 799 0 -chrIX 155535 155799 HC_gene_4305_tx_18 16 + 155535 155799 . 1 265 0 -chrIX 155535 155988 HC_gene_4305_tx_19 3 + 155535 155988 . 1 454 0 -chrIX 156023 157304 HC_gene_4306_tx_1 49 + 156023 157304 . 1 1282 0 -chrIX 156023 157304 HC_gene_4306_tx_2 1 + 156023 157304 . 2 1145,72 0,1210 -chrIX 156023 157304 HC_gene_4306_tx_3 1 + 156023 157304 . 2 310,931 0,351 -chrIX 156698 157304 HC_gene_4306_tx_4 4 + 156698 157304 . 1 607 0 -chrIX 157113 159208 HC_gene_4475_tx_1 2 - 157113 159208 . 1 2096 0 -chrIX 157113 160253 HC_gene_4475_tx_4 2 - 157113 160253 . 1 3141 0 -chrIX 157213 159208 HC_gene_4475_tx_2 8 - 157213 159208 . 1 1996 0 -chrIX 157213 159410 HC_gene_4475_tx_3 7 - 157213 159410 . 1 2198 0 -chrIX 157213 160014 HC_gene_4475_tx_5 3 - 157213 160014 . 1 2802 0 -chrIX 157213 160014 HC_gene_4475_tx_6 1 - 157213 160014 . 2 1752,913 0,1889 -chrIX 157213 160253 HC_gene_4475_tx_7 38 - 157213 160253 . 1 3041 0 -chrIX 160767 163004 HC_gene_4307_tx_1 12 + 160767 163004 . 1 2238 0 -chrIX 160767 163004 HC_gene_4307_tx_2 1 + 160767 163004 . 2 1251,948 0,1290 -chrIX 160767 163004 HC_gene_4307_tx_3 1 + 160767 163004 . 2 1232,887 0,1351 -chrIX 160814 162509 LC_gene_4476_tx_1 1 - 160814 162509 . 1 1696 0 -chrIX 160862 163004 HC_gene_4307_tx_4 25 + 160862 163004 . 1 2143 0 -chrIX 160862 163004 HC_gene_4307_tx_5 1 + 160862 163004 . 2 1156,859 0,1284 -chrIX 160989 163004 HC_gene_4307_tx_6 5 + 160989 163004 . 1 2016 0 -chrIX 161289 163004 HC_gene_4307_tx_7 3 + 161289 163004 . 1 1716 0 -chrIX 161934 163004 HC_gene_4307_tx_8 3 + 161934 163004 . 1 1071 0 -chrIX 163028 164513 HC_gene_4477_tx_1 3 - 163028 164513 . 1 1486 0 -chrIX 163028 164694 HC_gene_4477_tx_2 5 - 163028 164694 . 1 1667 0 -chrIX 163028 164944 HC_gene_4477_tx_3 2 - 163028 164944 . 1 1917 0 -chrIX 163028 165556 HC_gene_4477_tx_4 1 - 163028 165556 . 1 2529 0 -chrIX 163028 165930 HC_gene_4477_tx_5 1 - 163028 165930 . 2 1702,314 0,2589 -chrIX 163028 165930 HC_gene_4477_tx_6 3 - 163028 165930 . 1 2903 0 -chrIX 163028 165930 HC_gene_4477_tx_7 1 - 163028 165930 . 2 1325,1481 0,1422 -chrIX 164465 165183 MC_gene_4308_tx_1 1 + 164465 165183 . 1 719 0 -chrIX 166398 167532 HC_gene_4309_tx_1 6 + 166398 167532 . 2 37,1013 0,122 -chrIX 166398 167532 HC_gene_4309_tx_2 4 + 166398 167532 . 1 1135 0 -chrIX 166494 167532 HC_gene_4309_tx_3 11 + 166494 167532 . 1 1039 0 -chrIX 167291 169661 HC_gene_4478_tx_1 1 - 167291 169661 . 2 104,2161 0,210 -chrIX 167291 169661 HC_gene_4478_tx_2 2 - 167291 169661 . 1 2371 0 -chrIX 167412 168798 HC_gene_4478_tx_6 2 - 167412 168798 . 1 1387 0 -chrIX 167412 169180 HC_gene_4478_tx_7 4 - 167412 169180 . 1 1769 0 -chrIX 167412 169661 HC_gene_4478_tx_3 11 - 167412 169661 . 1 2250 0 -chrIX 167506 169180 HC_gene_4478_tx_8 1 - 167506 169180 . 1 1675 0 -chrIX 167506 169661 HC_gene_4478_tx_4 12 - 167506 169661 . 1 2156 0 -chrIX 167506 169661 HC_gene_4478_tx_5 1 - 167506 169661 . 2 774,1088 0,1068 -chrIX 169904 171536 HC_gene_4479_tx_1 14 - 169904 171536 . 1 1633 0 -chrIX 169964 171536 HC_gene_4479_tx_2 1 - 169964 171536 . 1 1573 0 -chrIX 170034 170401 MC_gene_4310_tx_1 1 + 170034 170401 . 1 368 0 -chrIX 171700 173102 HC_gene_4311_tx_1 42 + 171700 173102 . 1 1403 0 -chrIX 171700 173102 HC_gene_4311_tx_2 1 + 171700 173102 . 2 442,463 0,940 -chrIX 172226 173540 HC_gene_4480_tx_1 2 - 172226 173540 . 1 1315 0 -chrIX 172226 173631 HC_gene_4480_tx_2 9 - 172226 173631 . 1 1406 0 -chrIX 172226 173631 HC_gene_4480_tx_3 1 - 172226 173631 . 2 656,268 0,1138 -chrIX 172226 173631 HC_gene_4480_tx_4 1 - 172226 173631 . 2 593,440 0,966 -chrIX 172464 173102 HC_gene_4311_tx_3 4 + 172464 173102 . 1 639 0 -chrIX 172674 173631 HC_gene_4480_tx_5 1 - 172674 173631 . 1 958 0 -chrIX 173002 173540 HC_gene_4480_tx_6 2 - 173002 173540 . 1 539 0 -chrIX 173002 173631 HC_gene_4480_tx_7 28 - 173002 173631 . 1 630 0 -chrIX 173866 174645 MC_gene_4312_tx_1 1 + 173866 174645 . 1 780 0 -chrIX 175036 175309 MC_gene_4313_tx_1 1 + 175036 175309 . 1 274 0 -chrIX 175201 177288 MC_gene_4481_tx_1 1 - 175201 177288 . 2 364,1684 0,404 -chrIX 175226 175736 MC_gene_4481_tx_2 1 - 175226 175736 . 1 511 0 -chrIX 175265 176228 MC_gene_4314_tx_1 1 + 175265 176228 . 1 964 0 -chrIX 175347 176385 MC_gene_4315_tx_1 1 + 175347 176385 . 1 1039 0 -chrIX 177121 177517 HC_gene_4316_tx_1 1 + 177121 177517 . 1 397 0 -chrIX 177376 179534 LC_gene_4482_tx_1 1 - 177376 179534 . 1 2159 0 -chrIX 177554 179788 HC_gene_4317_tx_1 1 + 177554 179788 . 1 2235 0 -chrIX 177938 179788 HC_gene_4317_tx_2 1 + 177938 179788 . 1 1851 0 -chrIX 179673 180152 HC_gene_4483_tx_1 6 - 179673 180152 . 1 480 0 -chrIX 179673 180249 HC_gene_4483_tx_2 73 - 179673 180249 . 1 577 0 -chrIX 180418 182147 HC_gene_4318_tx_1 12 + 180418 182147 . 1 1730 0 -chrIX 181146 182147 HC_gene_4318_tx_2 2 + 181146 182147 . 1 1002 0 -chrIX 181964 183162 HC_gene_4484_tx_1 35 - 181964 183162 . 1 1199 0 -chrIX 182125 183162 HC_gene_4484_tx_2 1 - 182125 183162 . 1 1038 0 -chrIX 183776 186441 HC_gene_4319_tx_1 4 + 183776 186441 . 1 2666 0 -chrIX 183776 186441 HC_gene_4319_tx_2 1 + 183776 186441 . 4 438,183,862,968 0,546,772,1698 -chrIX 185959 186835 HC_gene_4485_tx_1 1 - 185959 186835 . 1 877 0 -chrIX 185959 187152 HC_gene_4485_tx_2 1 - 185959 187152 . 1 1194 0 -chrIX 185959 187675 HC_gene_4485_tx_3 3 - 185959 187675 . 1 1717 0 -chrIX 186224 186835 HC_gene_4485_tx_164 1 - 186224 186835 . 1 612 0 -chrIX 186224 187675 HC_gene_4485_tx_4 2 - 186224 187675 . 1 1452 0 -chrIX 186229 187675 HC_gene_4485_tx_5 1 - 186229 187675 . 1 1447 0 -chrIX 186230 186835 HC_gene_4485_tx_165 1 - 186230 186835 . 1 606 0 -chrIX 186232 187152 HC_gene_4485_tx_254 1 - 186232 187152 . 1 921 0 -chrIX 186237 187152 HC_gene_4485_tx_255 1 - 186237 187152 . 1 916 0 -chrIX 186237 187675 HC_gene_4485_tx_6 1 - 186237 187675 . 1 1439 0 -chrIX 186244 186835 HC_gene_4485_tx_166 1 - 186244 186835 . 1 592 0 -chrIX 186244 187152 HC_gene_4485_tx_256 1 - 186244 187152 . 1 909 0 -chrIX 186244 187675 HC_gene_4485_tx_7 1 - 186244 187675 . 1 1432 0 -chrIX 186249 186835 HC_gene_4485_tx_167 1 - 186249 186835 . 1 587 0 -chrIX 186255 187675 HC_gene_4485_tx_8 1 - 186255 187675 . 1 1421 0 -chrIX 186261 187675 HC_gene_4485_tx_9 1 - 186261 187675 . 1 1415 0 -chrIX 186262 187241 HC_gene_4485_tx_257 1 - 186262 187241 . 1 980 0 -chrIX 186278 186835 HC_gene_4485_tx_168 2 - 186278 186835 . 1 558 0 -chrIX 186278 187152 HC_gene_4485_tx_258 1 - 186278 187152 . 1 875 0 -chrIX 186278 187241 HC_gene_4485_tx_259 1 - 186278 187241 . 1 964 0 -chrIX 186278 187675 HC_gene_4485_tx_10 3 - 186278 187675 . 1 1398 0 -chrIX 186280 186835 HC_gene_4485_tx_169 1 - 186280 186835 . 1 556 0 -chrIX 186280 187241 HC_gene_4485_tx_260 1 - 186280 187241 . 1 962 0 -chrIX 186280 187675 HC_gene_4485_tx_11 3 - 186280 187675 . 1 1396 0 -chrIX 186281 187152 HC_gene_4485_tx_261 2 - 186281 187152 . 1 872 0 -chrIX 186281 187241 HC_gene_4485_tx_262 1 - 186281 187241 . 1 961 0 -chrIX 186281 187675 HC_gene_4485_tx_12 4 - 186281 187675 . 1 1395 0 -chrIX 186282 187241 HC_gene_4485_tx_263 2 - 186282 187241 . 1 960 0 -chrIX 186282 187675 HC_gene_4485_tx_13 1 - 186282 187675 . 1 1394 0 -chrIX 186284 187675 HC_gene_4485_tx_14 1 - 186284 187675 . 1 1392 0 -chrIX 186288 187241 HC_gene_4485_tx_264 1 - 186288 187241 . 1 954 0 -chrIX 186288 187675 HC_gene_4485_tx_15 1 - 186288 187675 . 1 1388 0 -chrIX 186289 186835 HC_gene_4485_tx_170 1 - 186289 186835 . 1 547 0 -chrIX 186289 187675 HC_gene_4485_tx_16 3 - 186289 187675 . 1 1387 0 -chrIX 186289 187675 HC_gene_4485_tx_17 1 - 186289 187675 . 2 853,425 0,962 -chrIX 186290 186835 HC_gene_4485_tx_171 3 - 186290 186835 . 1 546 0 -chrIX 186290 187675 HC_gene_4485_tx_18 1 - 186290 187675 . 1 1386 0 -chrIX 186291 186835 HC_gene_4485_tx_172 4 - 186291 186835 . 1 545 0 -chrIX 186291 187675 HC_gene_4485_tx_19 6 - 186291 187675 . 1 1385 0 -chrIX 186292 187675 HC_gene_4485_tx_20 1 - 186292 187675 . 1 1384 0 -chrIX 186293 187152 HC_gene_4485_tx_265 1 - 186293 187152 . 1 860 0 -chrIX 186293 187675 HC_gene_4485_tx_21 1 - 186293 187675 . 1 1383 0 -chrIX 186294 187152 HC_gene_4485_tx_266 1 - 186294 187152 . 1 859 0 -chrIX 186295 187675 HC_gene_4485_tx_22 1 - 186295 187675 . 1 1381 0 -chrIX 186297 187675 HC_gene_4485_tx_23 1 - 186297 187675 . 1 1379 0 -chrIX 186298 187241 HC_gene_4485_tx_267 2 - 186298 187241 . 1 944 0 -chrIX 186298 187675 HC_gene_4485_tx_24 3 - 186298 187675 . 1 1378 0 -chrIX 186299 186835 HC_gene_4485_tx_173 3 - 186299 186835 . 1 537 0 -chrIX 186299 187152 HC_gene_4485_tx_268 3 - 186299 187152 . 1 854 0 -chrIX 186299 187241 HC_gene_4485_tx_269 1 - 186299 187241 . 1 943 0 -chrIX 186299 187675 HC_gene_4485_tx_25 6 - 186299 187675 . 1 1377 0 -chrIX 186300 186835 HC_gene_4485_tx_174 1 - 186300 186835 . 1 536 0 -chrIX 186300 187675 HC_gene_4485_tx_26 2 - 186300 187675 . 1 1376 0 -chrIX 186301 186835 HC_gene_4485_tx_175 1 - 186301 186835 . 1 535 0 -chrIX 186301 187241 HC_gene_4485_tx_270 2 - 186301 187241 . 1 941 0 -chrIX 186304 186835 HC_gene_4485_tx_176 1 - 186304 186835 . 1 532 0 -chrIX 186304 187241 HC_gene_4485_tx_271 2 - 186304 187241 . 1 938 0 -chrIX 186304 187675 HC_gene_4485_tx_27 2 - 186304 187675 . 1 1372 0 -chrIX 186305 187241 HC_gene_4485_tx_272 1 - 186305 187241 . 1 937 0 -chrIX 186305 187675 HC_gene_4485_tx_28 7 - 186305 187675 . 1 1371 0 -chrIX 186306 187241 HC_gene_4485_tx_273 1 - 186306 187241 . 1 936 0 -chrIX 186306 187675 HC_gene_4485_tx_29 1 - 186306 187675 . 1 1370 0 -chrIX 186307 187241 HC_gene_4485_tx_274 1 - 186307 187241 . 1 935 0 -chrIX 186308 186835 HC_gene_4485_tx_177 1 - 186308 186835 . 1 528 0 -chrIX 186308 187152 HC_gene_4485_tx_275 3 - 186308 187152 . 1 845 0 -chrIX 186308 187241 HC_gene_4485_tx_276 1 - 186308 187241 . 1 934 0 -chrIX 186308 187675 HC_gene_4485_tx_30 8 - 186308 187675 . 1 1368 0 -chrIX 186308 187675 HC_gene_4485_tx_31 1 - 186308 187675 . 2 1072,228 0,1140 -chrIX 186309 186835 HC_gene_4485_tx_178 1 - 186309 186835 . 1 527 0 -chrIX 186309 187675 HC_gene_4485_tx_32 1 - 186309 187675 . 1 1367 0 -chrIX 186310 186835 HC_gene_4485_tx_179 1 - 186310 186835 . 1 526 0 -chrIX 186310 187675 HC_gene_4485_tx_33 2 - 186310 187675 . 1 1366 0 -chrIX 186311 187675 HC_gene_4485_tx_34 4 - 186311 187675 . 1 1365 0 -chrIX 186312 187675 HC_gene_4485_tx_35 3 - 186312 187675 . 1 1364 0 -chrIX 186313 187675 HC_gene_4485_tx_36 1 - 186313 187675 . 1 1363 0 -chrIX 186314 186835 HC_gene_4485_tx_180 4 - 186314 186835 . 1 522 0 -chrIX 186314 187241 HC_gene_4485_tx_277 1 - 186314 187241 . 1 928 0 -chrIX 186314 187675 HC_gene_4485_tx_37 10 - 186314 187675 . 1 1362 0 -chrIX 186315 186835 HC_gene_4485_tx_181 2 - 186315 186835 . 1 521 0 -chrIX 186315 187152 HC_gene_4485_tx_278 1 - 186315 187152 . 1 838 0 -chrIX 186318 187241 HC_gene_4485_tx_279 2 - 186318 187241 . 1 924 0 -chrIX 186318 187675 HC_gene_4485_tx_38 1 - 186318 187675 . 1 1358 0 -chrIX 186319 187675 HC_gene_4485_tx_39 4 - 186319 187675 . 1 1357 0 -chrIX 186320 186835 HC_gene_4485_tx_182 1 - 186320 186835 . 1 516 0 -chrIX 186320 187241 HC_gene_4485_tx_280 1 - 186320 187241 . 1 922 0 -chrIX 186320 187675 HC_gene_4485_tx_40 3 - 186320 187675 . 1 1356 0 -chrIX 186322 187241 HC_gene_4485_tx_281 1 - 186322 187241 . 1 920 0 -chrIX 186322 187675 HC_gene_4485_tx_41 2 - 186322 187675 . 1 1354 0 -chrIX 186323 187241 HC_gene_4485_tx_282 1 - 186323 187241 . 1 919 0 -chrIX 186323 187675 HC_gene_4485_tx_42 7 - 186323 187675 . 1 1353 0 -chrIX 186324 187241 HC_gene_4485_tx_283 1 - 186324 187241 . 1 918 0 -chrIX 186324 187675 HC_gene_4485_tx_43 3 - 186324 187675 . 1 1352 0 -chrIX 186325 186835 HC_gene_4485_tx_183 1 - 186325 186835 . 1 511 0 -chrIX 186325 187152 HC_gene_4485_tx_284 4 - 186325 187152 . 1 828 0 -chrIX 186325 187241 HC_gene_4485_tx_285 1 - 186325 187241 . 1 917 0 -chrIX 186325 187675 HC_gene_4485_tx_44 2 - 186325 187675 . 1 1351 0 -chrIX 186326 187241 HC_gene_4485_tx_286 1 - 186326 187241 . 1 916 0 -chrIX 186327 186835 HC_gene_4485_tx_184 1 - 186327 186835 . 1 509 0 -chrIX 186328 186835 HC_gene_4485_tx_185 2 - 186328 186835 . 1 508 0 -chrIX 186328 187241 HC_gene_4485_tx_287 1 - 186328 187241 . 1 914 0 -chrIX 186328 187675 HC_gene_4485_tx_45 4 - 186328 187675 . 1 1348 0 -chrIX 186329 187675 HC_gene_4485_tx_46 1 - 186329 187675 . 1 1347 0 -chrIX 186330 187675 HC_gene_4485_tx_47 1 - 186330 187675 . 1 1346 0 -chrIX 186332 186835 HC_gene_4485_tx_186 3 - 186332 186835 . 1 504 0 -chrIX 186332 187675 HC_gene_4485_tx_48 19 - 186332 187675 . 1 1344 0 -chrIX 186333 186835 HC_gene_4485_tx_187 3 - 186333 186835 . 1 503 0 -chrIX 186333 187675 HC_gene_4485_tx_49 4 - 186333 187675 . 1 1343 0 -chrIX 186334 187675 HC_gene_4485_tx_50 1 - 186334 187675 . 1 1342 0 -chrIX 186335 187152 HC_gene_4485_tx_288 1 - 186335 187152 . 1 818 0 -chrIX 186335 187675 HC_gene_4485_tx_51 1 - 186335 187675 . 1 1341 0 -chrIX 186336 186835 HC_gene_4485_tx_188 1 - 186336 186835 . 2 218,210 0,290 -chrIX 186336 187675 HC_gene_4485_tx_52 3 - 186336 187675 . 1 1340 0 -chrIX 186337 186835 HC_gene_4485_tx_189 2 - 186337 186835 . 1 499 0 -chrIX 186337 187152 HC_gene_4485_tx_289 1 - 186337 187152 . 2 371,368 0,448 -chrIX 186337 187152 HC_gene_4485_tx_290 1 - 186337 187152 . 1 816 0 -chrIX 186337 187241 HC_gene_4485_tx_291 3 - 186337 187241 . 1 905 0 -chrIX 186337 187675 HC_gene_4485_tx_53 3 - 186337 187675 . 1 1339 0 -chrIX 186338 186835 HC_gene_4485_tx_190 1 - 186338 186835 . 1 498 0 -chrIX 186338 187241 HC_gene_4485_tx_292 3 - 186338 187241 . 1 904 0 -chrIX 186338 187675 HC_gene_4485_tx_54 3 - 186338 187675 . 1 1338 0 -chrIX 186340 186835 HC_gene_4485_tx_191 1 - 186340 186835 . 1 496 0 -chrIX 186340 187152 HC_gene_4485_tx_293 2 - 186340 187152 . 1 813 0 -chrIX 186340 187241 HC_gene_4485_tx_294 4 - 186340 187241 . 1 902 0 -chrIX 186340 187675 HC_gene_4485_tx_55 17 - 186340 187675 . 1 1336 0 -chrIX 186341 187675 HC_gene_4485_tx_56 1 - 186341 187675 . 1 1335 0 -chrIX 186345 187675 HC_gene_4485_tx_57 4 - 186345 187675 . 1 1331 0 -chrIX 186346 187241 HC_gene_4485_tx_295 1 - 186346 187241 . 1 896 0 -chrIX 186346 187675 HC_gene_4485_tx_58 5 - 186346 187675 . 1 1330 0 -chrIX 186346 187675 HC_gene_4485_tx_59 1 - 186346 187675 . 2 925,228 0,1102 -chrIX 186347 186835 HC_gene_4485_tx_192 5 - 186347 186835 . 1 489 0 -chrIX 186347 187152 HC_gene_4485_tx_296 4 - 186347 187152 . 1 806 0 -chrIX 186347 187675 HC_gene_4485_tx_60 6 - 186347 187675 . 1 1329 0 -chrIX 186348 186835 HC_gene_4485_tx_193 1 - 186348 186835 . 1 488 0 -chrIX 186348 187241 HC_gene_4485_tx_297 4 - 186348 187241 . 1 894 0 -chrIX 186348 187675 HC_gene_4485_tx_61 4 - 186348 187675 . 1 1328 0 -chrIX 186349 186835 HC_gene_4485_tx_194 1 - 186349 186835 . 1 487 0 -chrIX 186349 187241 HC_gene_4485_tx_298 1 - 186349 187241 . 1 893 0 -chrIX 186349 187675 HC_gene_4485_tx_62 7 - 186349 187675 . 1 1327 0 -chrIX 186350 186835 HC_gene_4485_tx_195 2 - 186350 186835 . 1 486 0 -chrIX 186350 187152 HC_gene_4485_tx_299 2 - 186350 187152 . 1 803 0 -chrIX 186350 187241 HC_gene_4485_tx_300 2 - 186350 187241 . 1 892 0 -chrIX 186350 187675 HC_gene_4485_tx_63 6 - 186350 187675 . 1 1326 0 -chrIX 186351 186835 HC_gene_4485_tx_196 1 - 186351 186835 . 1 485 0 -chrIX 186351 187241 HC_gene_4485_tx_301 1 - 186351 187241 . 1 891 0 -chrIX 186351 187675 HC_gene_4485_tx_64 3 - 186351 187675 . 1 1325 0 -chrIX 186352 186835 HC_gene_4485_tx_197 1 - 186352 186835 . 1 484 0 -chrIX 186352 187152 HC_gene_4485_tx_302 4 - 186352 187152 . 1 801 0 -chrIX 186352 187675 HC_gene_4485_tx_65 5 - 186352 187675 . 1 1324 0 -chrIX 186353 186835 HC_gene_4485_tx_198 1 - 186353 186835 . 1 483 0 -chrIX 186353 187152 HC_gene_4485_tx_303 2 - 186353 187152 . 1 800 0 -chrIX 186353 187241 HC_gene_4485_tx_304 2 - 186353 187241 . 1 889 0 -chrIX 186353 187675 HC_gene_4485_tx_66 5 - 186353 187675 . 1 1323 0 -chrIX 186354 187675 HC_gene_4485_tx_67 2 - 186354 187675 . 1 1322 0 -chrIX 186355 186835 HC_gene_4485_tx_199 1 - 186355 186835 . 1 481 0 -chrIX 186355 187675 HC_gene_4485_tx_68 3 - 186355 187675 . 1 1321 0 -chrIX 186357 187675 HC_gene_4485_tx_69 1 - 186357 187675 . 1 1319 0 -chrIX 186358 187675 HC_gene_4485_tx_70 1 - 186358 187675 . 1 1318 0 -chrIX 186359 187152 HC_gene_4485_tx_305 1 - 186359 187152 . 1 794 0 -chrIX 186359 187675 HC_gene_4485_tx_71 6 - 186359 187675 . 1 1317 0 -chrIX 186360 186835 HC_gene_4485_tx_200 1 - 186360 186835 . 1 476 0 -chrIX 186360 187241 HC_gene_4485_tx_306 3 - 186360 187241 . 1 882 0 -chrIX 186360 187675 HC_gene_4485_tx_72 2 - 186360 187675 . 1 1316 0 -chrIX 186361 186835 HC_gene_4485_tx_201 1 - 186361 186835 . 1 475 0 -chrIX 186361 187241 HC_gene_4485_tx_307 1 - 186361 187241 . 1 881 0 -chrIX 186361 187675 HC_gene_4485_tx_73 3 - 186361 187675 . 1 1315 0 -chrIX 186362 187241 HC_gene_4485_tx_308 1 - 186362 187241 . 1 880 0 -chrIX 186362 187675 HC_gene_4485_tx_74 4 - 186362 187675 . 1 1314 0 -chrIX 186363 187675 HC_gene_4485_tx_75 3 - 186363 187675 . 1 1313 0 -chrIX 186364 187152 HC_gene_4485_tx_309 1 - 186364 187152 . 1 789 0 -chrIX 186364 187675 HC_gene_4485_tx_76 5 - 186364 187675 . 1 1312 0 -chrIX 186364 187675 HC_gene_4485_tx_77 1 - 186364 187675 . 2 841,289 0,1023 -chrIX 186365 186835 HC_gene_4485_tx_202 1 - 186365 186835 . 1 471 0 -chrIX 186365 187675 HC_gene_4485_tx_78 11 - 186365 187675 . 1 1311 0 -chrIX 186366 186835 HC_gene_4485_tx_203 2 - 186366 186835 . 1 470 0 -chrIX 186366 187241 HC_gene_4485_tx_310 1 - 186366 187241 . 1 876 0 -chrIX 186366 187675 HC_gene_4485_tx_79 3 - 186366 187675 . 1 1310 0 -chrIX 186367 186835 HC_gene_4485_tx_204 2 - 186367 186835 . 1 469 0 -chrIX 186367 187675 HC_gene_4485_tx_80 1 - 186367 187675 . 1 1309 0 -chrIX 186368 186835 HC_gene_4485_tx_205 1 - 186368 186835 . 1 468 0 -chrIX 186368 187152 HC_gene_4485_tx_311 1 - 186368 187152 . 1 785 0 -chrIX 186369 186835 HC_gene_4485_tx_206 2 - 186369 186835 . 1 467 0 -chrIX 186369 187241 HC_gene_4485_tx_312 2 - 186369 187241 . 1 873 0 -chrIX 186369 187675 HC_gene_4485_tx_81 4 - 186369 187675 . 1 1307 0 -chrIX 186370 187675 HC_gene_4485_tx_82 3 - 186370 187675 . 1 1306 0 -chrIX 186372 186835 HC_gene_4485_tx_207 1 - 186372 186835 . 1 464 0 -chrIX 186372 187241 HC_gene_4485_tx_313 2 - 186372 187241 . 1 870 0 -chrIX 186372 187675 HC_gene_4485_tx_83 6 - 186372 187675 . 1 1304 0 -chrIX 186372 187675 HC_gene_4485_tx_84 1 - 186372 187675 . 2 49,1160 0,144 -chrIX 186373 186835 HC_gene_4485_tx_208 1 - 186373 186835 . 1 463 0 -chrIX 186373 187152 HC_gene_4485_tx_314 1 - 186373 187152 . 1 780 0 -chrIX 186373 187241 HC_gene_4485_tx_315 2 - 186373 187241 . 1 869 0 -chrIX 186373 187675 HC_gene_4485_tx_85 2 - 186373 187675 . 1 1303 0 -chrIX 186374 187241 HC_gene_4485_tx_316 1 - 186374 187241 . 1 868 0 -chrIX 186374 187675 HC_gene_4485_tx_86 1 - 186374 187675 . 1 1302 0 -chrIX 186375 186835 HC_gene_4485_tx_209 1 - 186375 186835 . 1 461 0 -chrIX 186375 187675 HC_gene_4485_tx_87 3 - 186375 187675 . 1 1301 0 -chrIX 186377 187675 HC_gene_4485_tx_88 1 - 186377 187675 . 1 1299 0 -chrIX 186378 187675 HC_gene_4485_tx_89 1 - 186378 187675 . 1 1298 0 -chrIX 186379 186835 HC_gene_4485_tx_210 1 - 186379 186835 . 1 457 0 -chrIX 186379 187241 HC_gene_4485_tx_317 1 - 186379 187241 . 1 863 0 -chrIX 186379 187675 HC_gene_4485_tx_90 1 - 186379 187675 . 1 1297 0 -chrIX 186380 187675 HC_gene_4485_tx_91 2 - 186380 187675 . 1 1296 0 -chrIX 186382 186835 HC_gene_4485_tx_211 2 - 186382 186835 . 1 454 0 -chrIX 186382 187152 HC_gene_4485_tx_318 2 - 186382 187152 . 1 771 0 -chrIX 186382 187241 HC_gene_4485_tx_319 2 - 186382 187241 . 1 860 0 -chrIX 186382 187675 HC_gene_4485_tx_92 8 - 186382 187675 . 1 1294 0 -chrIX 186382 187675 HC_gene_4485_tx_93 1 - 186382 187675 . 2 39,1209 0,85 -chrIX 186384 186835 HC_gene_4485_tx_212 5 - 186384 186835 . 1 452 0 -chrIX 186384 187241 HC_gene_4485_tx_320 1 - 186384 187241 . 1 858 0 -chrIX 186384 187675 HC_gene_4485_tx_94 8 - 186384 187675 . 1 1292 0 -chrIX 186385 187675 HC_gene_4485_tx_95 1 - 186385 187675 . 1 1291 0 -chrIX 186386 186835 HC_gene_4485_tx_213 6 - 186386 186835 . 1 450 0 -chrIX 186386 187241 HC_gene_4485_tx_321 2 - 186386 187241 . 1 856 0 -chrIX 186386 187675 HC_gene_4485_tx_96 13 - 186386 187675 . 1 1290 0 -chrIX 186386 187675 HC_gene_4485_tx_97 1 - 186386 187675 . 2 810,205 0,1085 -chrIX 186387 187241 HC_gene_4485_tx_322 1 - 186387 187241 . 1 855 0 -chrIX 186387 187675 HC_gene_4485_tx_98 1 - 186387 187675 . 1 1289 0 -chrIX 186388 186835 HC_gene_4485_tx_214 1 - 186388 186835 . 1 448 0 -chrIX 186388 187241 HC_gene_4485_tx_323 1 - 186388 187241 . 1 854 0 -chrIX 186388 187675 HC_gene_4485_tx_99 4 - 186388 187675 . 1 1288 0 -chrIX 186389 186835 HC_gene_4485_tx_215 1 - 186389 186835 . 1 447 0 -chrIX 186389 187241 HC_gene_4485_tx_324 1 - 186389 187241 . 1 853 0 -chrIX 186389 187675 HC_gene_4485_tx_100 3 - 186389 187675 . 1 1287 0 -chrIX 186391 186835 HC_gene_4485_tx_216 2 - 186391 186835 . 1 445 0 -chrIX 186391 186835 HC_gene_4485_tx_217 1 - 186391 186835 . 2 30,311 0,134 -chrIX 186391 187675 HC_gene_4485_tx_101 2 - 186391 187675 . 1 1285 0 -chrIX 186392 187241 HC_gene_4485_tx_325 1 - 186392 187241 . 1 850 0 -chrIX 186392 187675 HC_gene_4485_tx_102 1 - 186392 187675 . 1 1284 0 -chrIX 186395 186835 HC_gene_4485_tx_218 1 - 186395 186835 . 1 441 0 -chrIX 186395 187241 HC_gene_4485_tx_326 1 - 186395 187241 . 1 847 0 -chrIX 186395 187675 HC_gene_4485_tx_103 1 - 186395 187675 . 1 1281 0 -chrIX 186396 186835 HC_gene_4485_tx_219 1 - 186396 186835 . 1 440 0 -chrIX 186396 187241 HC_gene_4485_tx_327 1 - 186396 187241 . 1 846 0 -chrIX 186396 187675 HC_gene_4485_tx_104 1 - 186396 187675 . 1 1280 0 -chrIX 186397 186835 HC_gene_4485_tx_220 1 - 186397 186835 . 1 439 0 -chrIX 186397 187152 HC_gene_4485_tx_328 2 - 186397 187152 . 1 756 0 -chrIX 186397 187675 HC_gene_4485_tx_105 2 - 186397 187675 . 1 1279 0 -chrIX 186398 186835 HC_gene_4485_tx_221 1 - 186398 186835 . 1 438 0 -chrIX 186398 187152 HC_gene_4485_tx_329 1 - 186398 187152 . 1 755 0 -chrIX 186398 187241 HC_gene_4485_tx_330 1 - 186398 187241 . 1 844 0 -chrIX 186398 187675 HC_gene_4485_tx_106 7 - 186398 187675 . 1 1278 0 -chrIX 186399 186835 HC_gene_4485_tx_222 2 - 186399 186835 . 1 437 0 -chrIX 186399 187152 HC_gene_4485_tx_331 1 - 186399 187152 . 1 754 0 -chrIX 186399 187241 HC_gene_4485_tx_332 3 - 186399 187241 . 1 843 0 -chrIX 186399 187675 HC_gene_4485_tx_107 7 - 186399 187675 . 1 1277 0 -chrIX 186400 186835 HC_gene_4485_tx_223 1 - 186400 186835 . 1 436 0 -chrIX 186400 187675 HC_gene_4485_tx_108 1 - 186400 187675 . 1 1276 0 -chrIX 186401 186835 HC_gene_4485_tx_224 2 - 186401 186835 . 1 435 0 -chrIX 186401 187241 HC_gene_4485_tx_333 1 - 186401 187241 . 1 841 0 -chrIX 186401 187675 HC_gene_4485_tx_109 1 - 186401 187675 . 1 1275 0 -chrIX 186402 187675 HC_gene_4485_tx_110 1 - 186402 187675 . 1 1274 0 -chrIX 186403 186835 HC_gene_4485_tx_225 1 - 186403 186835 . 1 433 0 -chrIX 186404 187675 HC_gene_4485_tx_111 4 - 186404 187675 . 1 1272 0 -chrIX 186405 187675 HC_gene_4485_tx_112 1 - 186405 187675 . 1 1271 0 -chrIX 186406 187675 HC_gene_4485_tx_113 5 - 186406 187675 . 1 1270 0 -chrIX 186407 187152 HC_gene_4485_tx_334 1 - 186407 187152 . 1 746 0 -chrIX 186407 187241 HC_gene_4485_tx_335 1 - 186407 187241 . 1 835 0 -chrIX 186407 187675 HC_gene_4485_tx_114 2 - 186407 187675 . 1 1269 0 -chrIX 186408 187675 HC_gene_4485_tx_115 2 - 186408 187675 . 1 1268 0 -chrIX 186409 187675 HC_gene_4485_tx_116 1 - 186409 187675 . 1 1267 0 -chrIX 186410 186835 HC_gene_4485_tx_226 1 - 186410 186835 . 1 426 0 -chrIX 186410 187241 HC_gene_4485_tx_336 1 - 186410 187241 . 1 832 0 -chrIX 186410 187675 HC_gene_4485_tx_117 1 - 186410 187675 . 1 1266 0 -chrIX 186412 187675 HC_gene_4485_tx_118 1 - 186412 187675 . 1 1264 0 -chrIX 186414 187675 HC_gene_4485_tx_119 1 - 186414 187675 . 1 1262 0 -chrIX 186415 186835 HC_gene_4485_tx_227 1 - 186415 186835 . 1 421 0 -chrIX 186416 187675 HC_gene_4485_tx_120 1 - 186416 187675 . 2 829,366 0,894 -chrIX 186417 187675 HC_gene_4485_tx_121 1 - 186417 187675 . 1 1259 0 -chrIX 186418 187152 HC_gene_4485_tx_337 1 - 186418 187152 . 1 735 0 -chrIX 186418 187241 HC_gene_4485_tx_338 1 - 186418 187241 . 1 824 0 -chrIX 186418 187675 HC_gene_4485_tx_122 3 - 186418 187675 . 1 1258 0 -chrIX 186419 187675 HC_gene_4485_tx_123 3 - 186419 187675 . 1 1257 0 -chrIX 186420 186835 HC_gene_4485_tx_228 1 - 186420 186835 . 1 416 0 -chrIX 186420 187241 HC_gene_4485_tx_339 2 - 186420 187241 . 1 822 0 -chrIX 186420 187675 HC_gene_4485_tx_124 6 - 186420 187675 . 1 1256 0 -chrIX 186422 187675 HC_gene_4485_tx_125 4 - 186422 187675 . 1 1254 0 -chrIX 186423 186835 HC_gene_4485_tx_229 1 - 186423 186835 . 1 413 0 -chrIX 186423 187675 HC_gene_4485_tx_126 3 - 186423 187675 . 1 1253 0 -chrIX 186424 187152 HC_gene_4485_tx_340 1 - 186424 187152 . 1 729 0 -chrIX 186424 187241 HC_gene_4485_tx_341 1 - 186424 187241 . 1 818 0 -chrIX 186424 187675 HC_gene_4485_tx_127 1 - 186424 187675 . 1 1252 0 -chrIX 186426 186835 HC_gene_4485_tx_230 1 - 186426 186835 . 1 410 0 -chrIX 186426 187241 HC_gene_4485_tx_342 1 - 186426 187241 . 1 816 0 -chrIX 186426 187675 HC_gene_4485_tx_128 4 - 186426 187675 . 1 1250 0 -chrIX 186427 187241 HC_gene_4485_tx_343 1 - 186427 187241 . 1 815 0 -chrIX 186427 187675 HC_gene_4485_tx_129 6 - 186427 187675 . 1 1249 0 -chrIX 186428 186835 HC_gene_4485_tx_231 1 - 186428 186835 . 1 408 0 -chrIX 186428 187241 HC_gene_4485_tx_344 2 - 186428 187241 . 1 814 0 -chrIX 186428 187675 HC_gene_4485_tx_130 3 - 186428 187675 . 1 1248 0 -chrIX 186429 186835 HC_gene_4485_tx_232 8 - 186429 186835 . 1 407 0 -chrIX 186429 187152 HC_gene_4485_tx_345 3 - 186429 187152 . 1 724 0 -chrIX 186429 187241 HC_gene_4485_tx_346 3 - 186429 187241 . 1 813 0 -chrIX 186429 187675 HC_gene_4485_tx_131 17 - 186429 187675 . 1 1247 0 -chrIX 186430 187675 HC_gene_4485_tx_132 1 - 186430 187675 . 1 1246 0 -chrIX 186431 187675 HC_gene_4485_tx_133 1 - 186431 187675 . 1 1245 0 -chrIX 186432 186835 HC_gene_4485_tx_233 1 - 186432 186835 . 1 404 0 -chrIX 186432 187675 HC_gene_4485_tx_134 2 - 186432 187675 . 1 1244 0 -chrIX 186433 186835 HC_gene_4485_tx_234 11 - 186433 186835 . 1 403 0 -chrIX 186433 187152 HC_gene_4485_tx_347 3 - 186433 187152 . 1 720 0 -chrIX 186433 187241 HC_gene_4485_tx_348 9 - 186433 187241 . 1 809 0 -chrIX 186433 187675 HC_gene_4485_tx_135 32 - 186433 187675 . 1 1243 0 -chrIX 186434 186835 HC_gene_4485_tx_235 4 - 186434 186835 . 1 402 0 -chrIX 186434 187152 HC_gene_4485_tx_349 4 - 186434 187152 . 1 719 0 -chrIX 186434 187241 HC_gene_4485_tx_350 3 - 186434 187241 . 1 808 0 -chrIX 186434 187675 HC_gene_4485_tx_136 24 - 186434 187675 . 1 1242 0 -chrIX 186435 187675 HC_gene_4485_tx_137 1 - 186435 187675 . 1 1241 0 -chrIX 186436 187152 HC_gene_4485_tx_351 1 - 186436 187152 . 1 717 0 -chrIX 186436 187675 HC_gene_4485_tx_138 7 - 186436 187675 . 1 1240 0 -chrIX 186437 186835 HC_gene_4485_tx_236 2 - 186437 186835 . 1 399 0 -chrIX 186437 187241 HC_gene_4485_tx_352 2 - 186437 187241 . 1 805 0 -chrIX 186437 187675 HC_gene_4485_tx_139 1 - 186437 187675 . 1 1239 0 -chrIX 186438 186835 HC_gene_4485_tx_237 8 - 186438 186835 . 1 398 0 -chrIX 186438 187152 HC_gene_4485_tx_353 4 - 186438 187152 . 1 715 0 -chrIX 186438 187675 HC_gene_4485_tx_140 19 - 186438 187675 . 1 1238 0 -chrIX 186438 187675 HC_gene_4485_tx_141 1 - 186438 187675 . 2 435,749 0,489 -chrIX 186439 187675 HC_gene_4485_tx_142 2 - 186439 187675 . 1 1237 0 -chrIX 186440 186835 HC_gene_4485_tx_238 1 - 186440 186835 . 1 396 0 -chrIX 186440 187675 HC_gene_4485_tx_143 3 - 186440 187675 . 1 1236 0 -chrIX 186441 186835 HC_gene_4485_tx_239 2 - 186441 186835 . 1 395 0 -chrIX 186441 187152 HC_gene_4485_tx_354 1 - 186441 187152 . 1 712 0 -chrIX 186441 187675 HC_gene_4485_tx_144 10 - 186441 187675 . 1 1235 0 -chrIX 186442 187241 HC_gene_4485_tx_355 1 - 186442 187241 . 1 800 0 -chrIX 186443 187675 HC_gene_4485_tx_145 3 - 186443 187675 . 1 1233 0 -chrIX 186444 186835 HC_gene_4485_tx_240 3 - 186444 186835 . 1 392 0 -chrIX 186444 187241 HC_gene_4485_tx_356 2 - 186444 187241 . 1 798 0 -chrIX 186444 187675 HC_gene_4485_tx_146 14 - 186444 187675 . 1 1232 0 -chrIX 186445 187675 HC_gene_4485_tx_147 6 - 186445 187675 . 1 1231 0 -chrIX 186446 186835 HC_gene_4485_tx_241 1 - 186446 186835 . 1 390 0 -chrIX 186446 187675 HC_gene_4485_tx_148 6 - 186446 187675 . 1 1230 0 -chrIX 186449 187241 HC_gene_4485_tx_357 1 - 186449 187241 . 1 793 0 -chrIX 186449 187675 HC_gene_4485_tx_149 2 - 186449 187675 . 1 1227 0 -chrIX 186451 186835 HC_gene_4485_tx_242 1 - 186451 186835 . 1 385 0 -chrIX 186452 187241 HC_gene_4485_tx_358 1 - 186452 187241 . 1 790 0 -chrIX 186452 187675 HC_gene_4485_tx_150 2 - 186452 187675 . 1 1224 0 -chrIX 186453 186835 HC_gene_4485_tx_243 1 - 186453 186835 . 1 383 0 -chrIX 186453 187675 HC_gene_4485_tx_151 3 - 186453 187675 . 1 1223 0 -chrIX 186454 186835 HC_gene_4485_tx_244 12 - 186454 186835 . 1 382 0 -chrIX 186454 187152 HC_gene_4485_tx_359 1 - 186454 187152 . 1 699 0 -chrIX 186454 187241 HC_gene_4485_tx_360 2 - 186454 187241 . 1 788 0 -chrIX 186454 187675 HC_gene_4485_tx_152 31 - 186454 187675 . 1 1222 0 -chrIX 186455 186835 HC_gene_4485_tx_245 5 - 186455 186835 . 1 381 0 -chrIX 186455 187152 HC_gene_4485_tx_361 1 - 186455 187152 . 1 698 0 -chrIX 186455 187241 HC_gene_4485_tx_362 5 - 186455 187241 . 1 787 0 -chrIX 186455 187675 HC_gene_4485_tx_153 13 - 186455 187675 . 1 1221 0 -chrIX 186456 186835 HC_gene_4485_tx_246 1 - 186456 186835 . 1 380 0 -chrIX 186456 187241 HC_gene_4485_tx_363 1 - 186456 187241 . 1 786 0 -chrIX 186459 187675 HC_gene_4485_tx_154 2 - 186459 187675 . 1 1217 0 -chrIX 186460 186835 HC_gene_4485_tx_247 1 - 186460 186835 . 1 376 0 -chrIX 186460 187152 HC_gene_4485_tx_364 2 - 186460 187152 . 1 693 0 -chrIX 186460 187241 HC_gene_4485_tx_365 5 - 186460 187241 . 1 782 0 -chrIX 186460 187675 HC_gene_4485_tx_155 9 - 186460 187675 . 1 1216 0 -chrIX 186461 186835 HC_gene_4485_tx_248 1 - 186461 186835 . 1 375 0 -chrIX 186461 187152 HC_gene_4485_tx_366 1 - 186461 187152 . 1 692 0 -chrIX 186461 187241 HC_gene_4485_tx_367 2 - 186461 187241 . 1 781 0 -chrIX 186461 187675 HC_gene_4485_tx_156 6 - 186461 187675 . 1 1215 0 -chrIX 186462 186835 HC_gene_4485_tx_249 1 - 186462 186835 . 1 374 0 -chrIX 186462 187152 HC_gene_4485_tx_368 1 - 186462 187152 . 1 691 0 -chrIX 186462 187675 HC_gene_4485_tx_157 2 - 186462 187675 . 1 1214 0 -chrIX 186463 186835 HC_gene_4485_tx_250 8 - 186463 186835 . 1 373 0 -chrIX 186463 187152 HC_gene_4485_tx_369 2 - 186463 187152 . 1 690 0 -chrIX 186463 187241 HC_gene_4485_tx_370 7 - 186463 187241 . 1 779 0 -chrIX 186463 187675 HC_gene_4485_tx_158 19 - 186463 187675 . 1 1213 0 -chrIX 186464 187675 HC_gene_4485_tx_159 5 - 186464 187675 . 1 1212 0 -chrIX 186465 186835 HC_gene_4485_tx_251 1 - 186465 186835 . 1 371 0 -chrIX 186465 187241 HC_gene_4485_tx_371 1 - 186465 187241 . 1 777 0 -chrIX 186465 187675 HC_gene_4485_tx_160 5 - 186465 187675 . 1 1211 0 -chrIX 186466 186835 HC_gene_4485_tx_252 5 - 186466 186835 . 1 370 0 -chrIX 186466 187241 HC_gene_4485_tx_372 3 - 186466 187241 . 1 776 0 -chrIX 186466 187675 HC_gene_4485_tx_161 9 - 186466 187675 . 1 1210 0 -chrIX 186467 187675 HC_gene_4485_tx_162 6 - 186467 187675 . 1 1209 0 -chrIX 186468 186835 HC_gene_4485_tx_253 3 - 186468 186835 . 1 368 0 -chrIX 186468 187152 HC_gene_4485_tx_373 1 - 186468 187152 . 1 685 0 -chrIX 186468 187675 HC_gene_4485_tx_163 10 - 186468 187675 . 1 1208 0 -chrIX 187626 188442 HC_gene_4486_tx_1 1 - 187626 188442 . 1 817 0 -chrIX 187626 188860 HC_gene_4486_tx_2 1 - 187626 188860 . 1 1235 0 -chrIX 187870 188295 HC_gene_4486_tx_4 11 - 187870 188295 . 1 426 0 -chrIX 187870 188442 HC_gene_4486_tx_5 3 - 187870 188442 . 1 573 0 -chrIX 187870 188860 HC_gene_4486_tx_3 36 - 187870 188860 . 1 991 0 -chrIX 187924 188972 MC_gene_4320_tx_1 1 + 187924 188972 . 1 1049 0 -chrIX 188050 188957 MC_gene_4320_tx_2 1 + 188050 188957 . 1 908 0 -chrIX 188987 191068 HC_gene_4321_tx_1 1 + 188987 191068 . 2 709,963 0,1119 -chrIX 188987 191068 HC_gene_4321_tx_2 5 + 188987 191068 . 1 2082 0 -chrIX 190918 192892 HC_gene_4487_tx_1 5 - 190918 192892 . 1 1975 0 -chrIX 190918 193231 HC_gene_4487_tx_2 1 - 190918 193231 . 2 1093,1111 0,1203 -chrIX 190918 193231 HC_gene_4487_tx_3 31 - 190918 193231 . 1 2314 0 -chrIX 190918 193231 HC_gene_4487_tx_4 1 - 190918 193231 . 2 925,1331 0,983 -chrIX 190918 193231 HC_gene_4487_tx_5 1 - 190918 193231 . 2 1480,778 0,1536 -chrIX 190918 193231 HC_gene_4487_tx_6 1 - 190918 193231 . 2 1072,1147 0,1167 -chrIX 190918 193231 HC_gene_4487_tx_7 1 - 190918 193231 . 2 1069,1111 0,1203 -chrIX 190918 193231 HC_gene_4487_tx_8 1 - 190918 193231 . 2 931,1216 0,1098 -chrIX 190918 193231 HC_gene_4487_tx_9 1 - 190918 193231 . 2 1023,1195 0,1119 -chrIX 192353 192892 HC_gene_4487_tx_10 1 - 192353 192892 . 1 540 0 -chrIX 192353 193231 HC_gene_4487_tx_11 5 - 192353 193231 . 1 879 0 -chrIX 193456 195287 HC_gene_4322_tx_1 3 + 193456 195287 . 1 1832 0 -chrIX 193456 195389 HC_gene_4322_tx_2 39 + 193456 195389 . 1 1934 0 -chrIX 193456 195389 HC_gene_4322_tx_3 1 + 193456 195389 . 2 1819,33 0,1901 -chrIX 193456 195389 HC_gene_4322_tx_4 1 + 193456 195389 . 2 102,1588 0,346 -chrIX 195299 195742 HC_gene_4488_tx_1 3 - 195299 195742 . 1 444 0 -chrIX 195299 195832 HC_gene_4488_tx_2 13 - 195299 195832 . 1 534 0 -chrIX 195299 196308 HC_gene_4488_tx_3 2 - 195299 196308 . 1 1010 0 -chrIX 196281 196573 HC_gene_4323_tx_1 1 + 196281 196573 . 1 293 0 -chrIX 196744 197464 LC_gene_4324_tx_1 1 + 196744 197464 . 1 721 0 -chrIX 197174 197454 MC_gene_4489_tx_1 1 - 197174 197454 . 1 281 0 -chrIX 197858 198137 HC_gene_4490_tx_1 18 - 197858 198137 . 1 280 0 -chrIX 197858 198282 HC_gene_4490_tx_2 14 - 197858 198282 . 1 425 0 -chrIX 197858 198486 HC_gene_4490_tx_3 19 - 197858 198486 . 1 629 0 -chrIX 197858 199111 HC_gene_4490_tx_4 6 - 197858 199111 . 1 1254 0 -chrIX 197858 199290 HC_gene_4490_tx_5 3 - 197858 199290 . 1 1433 0 -chrIX 197858 199477 HC_gene_4490_tx_6 27 - 197858 199477 . 1 1620 0 -chrIX 199567 200194 HC_gene_4491_tx_1 59 - 199567 200194 . 1 628 0 -chrIX 199611 200530 MC_gene_4325_tx_1 1 + 199611 200530 . 1 920 0 -chrIX 200433 202091 HC_gene_4492_tx_1 24 - 200433 202091 . 1 1659 0 -chrIX 200433 202091 HC_gene_4492_tx_2 1 - 200433 202091 . 2 623,971 0,688 -chrIX 200433 202091 HC_gene_4492_tx_3 1 - 200433 202091 . 2 665,878 0,781 -chrIX 200433 202091 HC_gene_4492_tx_4 1 - 200433 202091 . 2 1169,398 0,1261 -chrIX 201129 202091 HC_gene_4492_tx_5 1 - 201129 202091 . 1 963 0 -chrIX 202188 202869 HC_gene_4493_tx_1 2 - 202188 202869 . 1 682 0 -chrIX 202188 203302 HC_gene_4493_tx_2 1 - 202188 203302 . 2 509,172 0,943 -chrIX 202188 203302 HC_gene_4493_tx_3 3 - 202188 203302 . 1 1115 0 -chrIX 202251 202926 HC_gene_4326_tx_1 1 + 202251 202926 . 1 676 0 -chrIX 203330 204131 HC_gene_4494_tx_1 1 - 203330 204131 . 1 802 0 -chrIX 203330 204759 HC_gene_4494_tx_3 6 - 203330 204759 . 1 1430 0 -chrIX 203436 204131 HC_gene_4494_tx_2 4 - 203436 204131 . 1 696 0 -chrIX 203436 204759 HC_gene_4494_tx_4 33 - 203436 204759 . 1 1324 0 -chrIX 203436 204759 HC_gene_4494_tx_5 1 - 203436 204759 . 2 1168,98 0,1226 -chrIX 203436 204994 HC_gene_4494_tx_6 3 - 203436 204994 . 1 1559 0 -chrIX 204228 204759 HC_gene_4494_tx_7 1 - 204228 204759 . 1 532 0 -chrIX 205127 205972 MC_gene_4327_tx_1 1 + 205127 205972 . 1 846 0 -chrIX 205312 207102 MC_gene_4495_tx_1 1 - 205312 207102 . 1 1791 0 -chrIX 207588 210569 MC_gene_4328_tx_1 1 + 207588 210569 . 2 494,2397 0,585 -chrIX 210884 211204 HC_gene_4496_tx_1 14 - 210884 211204 . 1 321 0 -chrIX 210884 212027 HC_gene_4496_tx_2 43 - 210884 212027 . 1 1144 0 -chrIX 212455 214783 HC_gene_4329_tx_1 339 + 212455 214783 . 1 2329 0 -chrIX 212455 214783 HC_gene_4329_tx_2 1 + 212455 214783 . 2 1063,1205 0,1124 -chrIX 212455 214783 HC_gene_4329_tx_3 1 + 212455 214783 . 2 249,2007 0,322 -chrIX 212455 214783 HC_gene_4329_tx_4 1 + 212455 214783 . 2 1210,1021 0,1308 -chrIX 212455 214783 HC_gene_4329_tx_5 1 + 212455 214783 . 2 1113,1071 0,1258 -chrIX 212455 214783 HC_gene_4329_tx_6 1 + 212455 214783 . 2 1284,981 0,1348 -chrIX 212455 214783 HC_gene_4329_tx_7 1 + 212455 214783 . 2 787,1479 0,850 -chrIX 212455 214783 HC_gene_4329_tx_8 1 + 212455 214783 . 2 287,1628 0,701 -chrIX 212455 214783 HC_gene_4329_tx_9 1 + 212455 214783 . 2 1086,1193 0,1136 -chrIX 212455 214783 HC_gene_4329_tx_10 1 + 212455 214783 . 3 842,233,1036 0,995,1293 -chrIX 212455 214783 HC_gene_4329_tx_11 1 + 212455 214783 . 2 1350,897 0,1432 -chrIX 212455 214783 HC_gene_4329_tx_12 1 + 212455 214783 . 2 993,1276 0,1053 -chrIX 212455 214783 HC_gene_4329_tx_13 1 + 212455 214783 . 2 1265,981 0,1348 -chrIX 212455 214783 HC_gene_4329_tx_14 1 + 212455 214783 . 2 1286,941 0,1388 -chrIX 212455 214783 HC_gene_4329_tx_15 1 + 212455 214783 . 2 1327,958 0,1371 -chrIX 212455 214783 HC_gene_4329_tx_16 1 + 212455 214783 . 2 266,1508 0,821 -chrIX 212455 214783 HC_gene_4329_tx_17 1 + 212455 214783 . 2 1241,1001 0,1328 -chrIX 212455 214783 HC_gene_4329_tx_18 1 + 212455 214783 . 3 358,766,1105 0,412,1224 -chrIX 212455 214783 HC_gene_4329_tx_19 1 + 212455 214783 . 2 893,1381 0,948 -chrIX 212455 214783 HC_gene_4329_tx_20 1 + 212455 214783 . 2 1462,803 0,1526 -chrIX 212455 214783 HC_gene_4329_tx_21 1 + 212455 214783 . 2 1284,996 0,1333 -chrIX 212455 214783 HC_gene_4329_tx_22 1 + 212455 214783 . 2 1039,1162 0,1167 -chrIX 212455 214783 HC_gene_4329_tx_23 1 + 212455 214783 . 2 1210,1060 0,1269 -chrIX 212462 214783 HC_gene_4329_tx_24 1 + 212462 214783 . 2 800,1458 0,864 -chrIX 212820 214783 HC_gene_4329_tx_25 20 + 212820 214783 . 1 1964 0 -chrIX 212971 214783 HC_gene_4329_tx_26 42 + 212971 214783 . 1 1813 0 -chrIX 213127 214783 HC_gene_4329_tx_27 20 + 213127 214783 . 1 1657 0 -chrIX 213127 214783 HC_gene_4329_tx_28 1 + 213127 214783 . 2 86,1021 0,636 -chrIX 213261 214783 HC_gene_4329_tx_29 63 + 213261 214783 . 1 1523 0 -chrIX 213261 214783 HC_gene_4329_tx_30 1 + 213261 214783 . 2 472,914 0,609 -chrIX 213467 214783 HC_gene_4329_tx_31 38 + 213467 214783 . 1 1317 0 -chrIX 213467 214783 HC_gene_4329_tx_32 1 + 213467 214783 . 2 288,749 0,568 -chrIX 213542 214783 HC_gene_4329_tx_33 1 + 213542 214783 . 2 244,779 0,463 -chrIX 213542 214783 HC_gene_4329_tx_34 18 + 213542 214783 . 1 1242 0 -chrIX 213542 214783 HC_gene_4329_tx_35 1 + 213542 214783 . 2 539,644 0,598 -chrIX 213669 214783 HC_gene_4329_tx_36 89 + 213669 214783 . 1 1115 0 -chrIX 213669 214783 HC_gene_4329_tx_37 1 + 213669 214783 . 2 991,65 0,1050 -chrIX 213669 214783 HC_gene_4329_tx_38 1 + 213669 214783 . 2 394,644 0,471 -chrIX 213669 214783 HC_gene_4329_tx_39 1 + 213669 214783 . 2 467,444 0,671 -chrIX 213861 214783 HC_gene_4329_tx_40 80 + 213861 214783 . 1 923 0 -chrIX 214007 214783 HC_gene_4329_tx_41 107 + 214007 214783 . 1 777 0 -chrIX 214007 214783 HC_gene_4329_tx_42 1 + 214007 214783 . 2 56,509 0,268 -chrIX 214101 214783 HC_gene_4329_tx_43 132 + 214101 214783 . 1 683 0 -chrIX 214359 214783 HC_gene_4329_tx_44 1 + 214359 214783 . 2 53,243 0,182 -chrIX 214420 214783 HC_gene_4329_tx_45 251 + 214420 214783 . 1 364 0 -chrIX 214673 215387 HC_gene_4497_tx_1 1 - 214673 215387 . 1 715 0 -chrIX 214673 215596 HC_gene_4497_tx_2 1 - 214673 215596 . 1 924 0 -chrIX 214673 215825 HC_gene_4497_tx_3 1 - 214673 215825 . 1 1153 0 -chrIX 214673 215955 HC_gene_4497_tx_4 2 - 214673 215955 . 1 1283 0 -chrIX 214873 215387 HC_gene_4497_tx_8 10 - 214873 215387 . 1 515 0 -chrIX 214873 215596 HC_gene_4497_tx_9 9 - 214873 215596 . 1 724 0 -chrIX 214873 215825 HC_gene_4497_tx_5 3 - 214873 215825 . 1 953 0 -chrIX 214873 215955 HC_gene_4497_tx_6 35 - 214873 215955 . 1 1083 0 -chrIX 214873 215955 HC_gene_4497_tx_7 1 - 214873 215955 . 2 398,553 0,530 -chrIX 216105 216490 HC_gene_4498_tx_1 28 - 216105 216490 . 1 386 0 -chrIX 216252 217619 HC_gene_4330_tx_1 1 + 216252 217619 . 1 1368 0 -chrIX 216645 217619 HC_gene_4330_tx_2 223 + 216645 217619 . 1 975 0 -chrIX 216645 217619 HC_gene_4330_tx_3 1 + 216645 217619 . 2 596,337 0,638 -chrIX 216645 217824 HC_gene_4330_tx_4 9 + 216645 217824 . 1 1180 0 -chrIX 216771 217619 HC_gene_4330_tx_5 11 + 216771 217619 . 1 849 0 -chrIX 216992 217619 HC_gene_4330_tx_6 18 + 216992 217619 . 1 628 0 -chrIX 217078 217619 HC_gene_4330_tx_7 4 + 217078 217619 . 1 542 0 -chrIX 217159 217619 HC_gene_4330_tx_8 18 + 217159 217619 . 1 461 0 -chrIX 217159 217824 HC_gene_4330_tx_9 1 + 217159 217824 . 1 666 0 -chrIX 217754 218261 HC_gene_4499_tx_1 157 - 217754 218261 . 1 508 0 -chrIX 217754 218507 HC_gene_4499_tx_2 29 - 217754 218507 . 1 754 0 -chrIX 217754 218571 HC_gene_4499_tx_3 17 - 217754 218571 . 1 818 0 -chrIX 217754 218804 HC_gene_4499_tx_4 18 - 217754 218804 . 1 1051 0 -chrIX 217754 218926 HC_gene_4499_tx_5 17 - 217754 218926 . 1 1173 0 -chrIX 217754 219244 HC_gene_4499_tx_6 15 - 217754 219244 . 1 1491 0 -chrIX 217754 219244 HC_gene_4499_tx_7 1 - 217754 219244 . 2 318,1131 0,360 -chrIX 217754 219244 HC_gene_4499_tx_8 1 - 217754 219244 . 2 471,153 0,1338 -chrIX 217754 219475 HC_gene_4499_tx_9 6 - 217754 219475 . 1 1722 0 -chrIX 217754 219557 HC_gene_4499_tx_10 8 - 217754 219557 . 1 1804 0 -chrIX 217754 219859 HC_gene_4499_tx_11 6 - 217754 219859 . 1 2106 0 -chrIX 217754 219859 HC_gene_4499_tx_12 1 - 217754 219859 . 2 1089,348 0,1758 -chrIX 217754 219946 HC_gene_4499_tx_13 3 - 217754 219946 . 1 2193 0 -chrIX 217754 220466 HC_gene_4499_tx_14 4 - 217754 220466 . 1 2713 0 -chrIX 217754 220466 HC_gene_4499_tx_15 1 - 217754 220466 . 2 2383,280 0,2433 -chrIX 217754 220742 HC_gene_4499_tx_16 1 - 217754 220742 . 2 1743,1186 0,1803 -chrIX 217754 220763 HC_gene_4499_tx_17 78 - 217754 220763 . 1 3010 0 -chrIX 217754 220763 HC_gene_4499_tx_18 1 - 217754 220763 . 2 1200,1504 0,1506 -chrIX 217754 220763 HC_gene_4499_tx_19 1 - 217754 220763 . 2 1712,719 0,2291 -chrIX 217754 220763 HC_gene_4499_tx_20 1 - 217754 220763 . 2 2046,885 0,2125 -chrIX 217754 220763 HC_gene_4499_tx_21 1 - 217754 220763 . 2 2035,853 0,2157 -chrIX 220958 221114 HC_gene_4331_tx_1 2 + 220958 221114 . 1 157 0 -chrIX 221027 221653 HC_gene_4500_tx_1 19 - 221027 221653 . 1 627 0 -chrIX 221027 221653 HC_gene_4500_tx_2 1 - 221027 221653 . 2 288,256 0,371 -chrIX 221027 222540 HC_gene_4500_tx_3 81 - 221027 222540 . 1 1514 0 -chrIX 221027 222540 HC_gene_4500_tx_4 1 - 221027 222540 . 2 437,947 0,567 -chrIX 222553 224211 MC_gene_4501_tx_1 1 - 222553 224211 . 1 1659 0 -chrIX 222716 225208 MC_gene_4502_tx_1 1 - 222716 225208 . 1 2493 0 -chrIX 222870 224490 HC_gene_4332_tx_1 5 + 222870 224490 . 1 1621 0 -chrIX 222870 224912 HC_gene_4332_tx_2 1 + 222870 224912 . 1 2043 0 -chrIX 225277 225642 MC_gene_4333_tx_1 1 + 225277 225642 . 1 366 0 -chrIX 225802 226257 LC_gene_4503_tx_1 1 - 225802 226257 . 1 456 0 -chrIX 226495 230028 HC_gene_4504_tx_1 1 - 226495 230028 . 1 3534 0 -chrIX 227772 228574 HC_gene_4334_tx_1 2 + 227772 228574 . 1 803 0 -chrIX 228353 230028 HC_gene_4504_tx_2 2 - 228353 230028 . 1 1676 0 -chrIX 228417 229926 HC_gene_4504_tx_3 1 - 228417 229926 . 1 1510 0 -chrIX 228417 230028 HC_gene_4504_tx_4 12 - 228417 230028 . 1 1612 0 -chrIX 228507 230028 HC_gene_4504_tx_5 2 - 228507 230028 . 1 1522 0 -chrIX 229760 230349 MC_gene_4335_tx_1 1 + 229760 230349 . 1 590 0 -chrIX 230144 230716 HC_gene_4505_tx_1 10 - 230144 230716 . 1 573 0 -chrIX 230144 231135 HC_gene_4505_tx_2 59 - 230144 231135 . 1 992 0 -chrIX 231392 231669 HC_gene_4506_tx_1 92 - 231392 231669 . 1 278 0 -chrIX 231392 231762 HC_gene_4506_tx_2 1195 - 231392 231762 . 1 371 0 -chrIX 231392 232405 HC_gene_4506_tx_3 65 - 231392 232405 . 1 1014 0 -chrIX 231392 232405 HC_gene_4506_tx_4 214 - 231392 232405 . 2 566,39 0,975 -chrIX 231495 231762 HC_gene_4506_tx_7 69 - 231495 231762 . 1 268 0 -chrIX 231495 232405 HC_gene_4506_tx_5 15 - 231495 232405 . 2 463,39 0,872 -chrIX 231495 232405 HC_gene_4506_tx_6 8 - 231495 232405 . 1 911 0 -chrIX 232436 232884 MC_gene_4336_tx_1 1 + 232436 232884 . 1 449 0 -chrIX 232797 235533 HC_gene_4507_tx_1 3 - 232797 235533 . 1 2737 0 -chrIX 233012 233634 LC_gene_4337_tx_1 1 + 233012 233634 . 1 623 0 -chrIX 233016 235431 HC_gene_4507_tx_2 2 - 233016 235431 . 1 2416 0 -chrIX 233016 235533 HC_gene_4507_tx_3 11 - 233016 235533 . 1 2518 0 -chrIX 235665 237820 HC_gene_4508_tx_1 13 - 235665 237820 . 1 2156 0 -chrIX 235741 236098 LC_gene_4338_tx_1 1 + 235741 236098 . 1 358 0 -chrIX 237962 240893 MC_gene_4509_tx_1 1 - 237962 240893 . 1 2932 0 -chrIX 237972 240761 MC_gene_4509_tx_2 1 - 237972 240761 . 1 2790 0 -chrIX 238081 238944 LC_gene_4339_tx_1 1 + 238081 238944 . 1 864 0 -chrIX 241175 241815 HC_gene_4510_tx_1 5 - 241175 241815 . 1 641 0 -chrIX 241232 241650 HC_gene_4510_tx_3 31 - 241232 241650 . 1 419 0 -chrIX 241232 241815 HC_gene_4510_tx_2 160 - 241232 241815 . 1 584 0 -chrIX 242006 242811 HC_gene_4340_tx_1 103 + 242006 242811 . 1 806 0 -chrIX 242136 242811 HC_gene_4340_tx_2 18 + 242136 242811 . 1 676 0 -chrIX 242634 243793 MC_gene_4511_tx_1 1 - 242634 243793 . 1 1160 0 -chrIX 242653 243418 MC_gene_4511_tx_2 1 - 242653 243418 . 1 766 0 -chrIX 242699 243211 MC_gene_4511_tx_3 1 - 242699 243211 . 1 513 0 -chrIX 242703 243038 MC_gene_4511_tx_4 1 - 242703 243038 . 1 336 0 -chrIX 242723 243557 MC_gene_4511_tx_5 1 - 242723 243557 . 1 835 0 -chrIX 243649 244000 HC_gene_4341_tx_1 5 + 243649 244000 . 1 352 0 -chrIX 243926 244293 HC_gene_4512_tx_1 64 - 243926 244293 . 1 368 0 -chrIX 243926 244501 HC_gene_4512_tx_2 280 - 243926 244501 . 1 576 0 -chrIX 244321 244769 LC_gene_4342_tx_1 1 + 244321 244769 . 1 449 0 -chrIX 244624 245579 HC_gene_4513_tx_1 21 - 244624 245579 . 1 956 0 -chrIX 245710 245972 MC_gene_4343_tx_1 1 + 245710 245972 . 1 263 0 -chrIX 245941 247455 MC_gene_4514_tx_1 1 - 245941 247455 . 1 1515 0 -chrIX 246002 246923 MC_gene_4514_tx_2 1 - 246002 246923 . 1 922 0 -chrIX 246328 247022 MC_gene_4514_tx_3 1 - 246328 247022 . 1 695 0 -chrIX 247217 247926 HC_gene_4344_tx_1 1 + 247217 247926 . 1 710 0 -chrIX 247755 248464 MC_gene_4515_tx_1 1 - 247755 248464 . 1 710 0 -chrIX 248781 249075 HC_gene_4516_tx_1 3 - 248781 249075 . 1 295 0 -chrIX 249652 251478 HC_gene_4345_tx_1 1 + 249652 251478 . 1 1827 0 -chrIX 249652 251971 HC_gene_4345_tx_2 46 + 249652 251971 . 1 2320 0 -chrIX 249652 252047 HC_gene_4345_tx_3 10 + 249652 252047 . 1 2396 0 -chrIX 249652 252156 HC_gene_4345_tx_4 2 + 249652 252156 . 1 2505 0 -chrIX 249695 249953 HC_gene_4345_tx_17 1 + 249695 249953 . 1 259 0 -chrIX 249863 251971 HC_gene_4345_tx_5 18 + 249863 251971 . 1 2109 0 -chrIX 249863 252047 HC_gene_4345_tx_6 3 + 249863 252047 . 1 2185 0 -chrIX 249996 251971 HC_gene_4345_tx_7 4 + 249996 251971 . 1 1976 0 -chrIX 249996 251971 HC_gene_4345_tx_8 1 + 249996 251971 . 2 312,1598 0,378 -chrIX 249996 252047 HC_gene_4345_tx_9 11 + 249996 252047 . 1 2052 0 -chrIX 249996 252156 HC_gene_4345_tx_10 1 + 249996 252156 . 1 2161 0 -chrIX 250121 251971 HC_gene_4345_tx_11 8 + 250121 251971 . 1 1851 0 -chrIX 250121 251971 HC_gene_4345_tx_12 1 + 250121 251971 . 2 1113,496 0,1355 -chrIX 250121 252047 HC_gene_4345_tx_13 3 + 250121 252047 . 1 1927 0 -chrIX 250121 252156 HC_gene_4345_tx_14 1 + 250121 252156 . 1 2036 0 -chrIX 250339 251971 HC_gene_4345_tx_15 7 + 250339 251971 . 1 1633 0 -chrIX 250339 252047 HC_gene_4345_tx_16 5 + 250339 252047 . 1 1709 0 -chrIX 251206 251971 HC_gene_4345_tx_18 15 + 251206 251971 . 1 766 0 -chrIX 251206 251971 HC_gene_4345_tx_19 1 + 251206 251971 . 2 132,586 0,180 -chrIX 251206 252047 HC_gene_4345_tx_20 7 + 251206 252047 . 1 842 0 -chrIX 251638 251971 HC_gene_4345_tx_21 19 + 251638 251971 . 1 334 0 -chrIX 251638 252047 HC_gene_4345_tx_22 3 + 251638 252047 . 1 410 0 -chrIX 251932 252985 MC_gene_4517_tx_1 1 - 251932 252985 . 1 1054 0 -chrIX 251968 253559 MC_gene_4518_tx_1 1 - 251968 253559 . 1 1592 0 -chrIX 251983 253773 MC_gene_4518_tx_2 1 - 251983 253773 . 1 1791 0 -chrIX 252007 253858 MC_gene_4518_tx_3 1 - 252007 253858 . 1 1852 0 -chrIX 253659 254723 LC_gene_4346_tx_1 1 + 253659 254723 . 1 1065 0 -chrIX 253871 254726 MC_gene_4519_tx_1 1 - 253871 254726 . 1 856 0 -chrIX 255086 255932 HC_gene_4347_tx_1 2 + 255086 255932 . 1 847 0 -chrIX 255086 255933 HC_gene_4347_tx_2 1 + 255086 255933 . 1 848 0 -chrIX 255086 255934 HC_gene_4347_tx_3 1 + 255086 255934 . 1 849 0 -chrIX 255086 256027 HC_gene_4347_tx_4 1721 + 255086 256027 . 1 942 0 -chrIX 255086 256027 HC_gene_4347_tx_5 2 + 255086 256027 . 2 756,57 0,885 -chrIX 255086 256027 HC_gene_4347_tx_6 1 + 255086 256027 . 2 778,54 0,888 -chrIX 255086 256027 HC_gene_4347_tx_7 5 + 255086 256027 . 2 745,57 0,885 -chrIX 255086 256027 HC_gene_4347_tx_8 1 + 255086 256027 . 2 806,85 0,857 -chrIX 255086 256027 HC_gene_4347_tx_9 1 + 255086 256027 . 2 778,57 0,885 -chrIX 255086 256027 HC_gene_4347_tx_10 1 + 255086 256027 . 2 736,132 0,810 -chrIX 255086 256027 HC_gene_4347_tx_11 1 + 255086 256027 . 2 778,51 0,891 -chrIX 255086 256027 HC_gene_4347_tx_12 1 + 255086 256027 . 3 201,363,132 0,382,810 -chrIX 255086 256027 HC_gene_4347_tx_13 2 + 255086 256027 . 2 736,102 0,840 -chrIX 255086 256027 HC_gene_4347_tx_14 2 + 255086 256027 . 2 756,66 0,876 -chrIX 255086 256027 HC_gene_4347_tx_15 1 + 255086 256027 . 2 585,317 0,625 -chrIX 255086 256027 HC_gene_4347_tx_16 1 + 255086 256027 . 2 756,68 0,874 -chrIX 255086 256027 HC_gene_4347_tx_17 5 + 255086 256027 . 2 736,57 0,885 -chrIX 255086 256027 HC_gene_4347_tx_18 1 + 255086 256027 . 2 745,61 0,881 -chrIX 255086 256027 HC_gene_4347_tx_19 2 + 255086 256027 . 2 786,57 0,885 -chrIX 255086 256027 HC_gene_4347_tx_20 1 + 255086 256027 . 2 736,77 0,865 -chrIX 255086 256027 HC_gene_4347_tx_21 2 + 255086 256027 . 2 729,57 0,885 -chrIX 255086 256027 HC_gene_4347_tx_22 1 + 255086 256027 . 3 465,279,74 0,499,868 -chrIX 255086 256027 HC_gene_4347_tx_23 1 + 255086 256027 . 2 745,85 0,857 -chrIX 255086 256027 HC_gene_4347_tx_24 4 + 255086 256027 . 2 711,57 0,885 -chrIX 255086 256027 HC_gene_4347_tx_25 1 + 255086 256027 . 2 778,78 0,864 -chrIX 255086 256027 HC_gene_4347_tx_26 1 + 255086 256027 . 2 778,64 0,878 -chrIX 255086 256027 HC_gene_4347_tx_27 1 + 255086 256027 . 2 153,560 0,382 -chrIX 255086 256027 HC_gene_4347_tx_28 2 + 255086 256027 . 2 756,129 0,813 -chrIX 255086 256027 HC_gene_4347_tx_29 1 + 255086 256027 . 2 833,50 0,892 -chrIX 255086 256027 HC_gene_4347_tx_30 1 + 255086 256027 . 2 778,58 0,884 -chrIX 255086 256027 HC_gene_4347_tx_31 1 + 255086 256027 . 2 756,50 0,892 -chrIX 255086 256027 HC_gene_4347_tx_32 1 + 255086 256027 . 2 766,57 0,885 -chrIX 255086 256027 HC_gene_4347_tx_33 1 + 255086 256027 . 2 806,57 0,885 -chrIX 255086 256027 HC_gene_4347_tx_34 1 + 255086 256027 . 2 74,691 0,251 -chrIX 255086 256027 HC_gene_4347_tx_35 1 + 255086 256027 . 2 748,57 0,885 -chrIX 255086 256027 HC_gene_4347_tx_36 1 + 255086 256027 . 2 782,57 0,885 -chrIX 255086 256027 HC_gene_4347_tx_37 1 + 255086 256027 . 2 745,129 0,813 -chrIX 255086 256027 HC_gene_4347_tx_38 1 + 255086 256027 . 2 736,60 0,882 -chrIX 255086 256027 HC_gene_4347_tx_39 1 + 255086 256027 . 2 745,119 0,823 -chrIX 255086 256027 HC_gene_4347_tx_40 1 + 255086 256027 . 2 318,497 0,445 -chrIX 255086 256027 HC_gene_4347_tx_41 1 + 255086 256027 . 2 745,69 0,873 -chrIX 255086 256027 HC_gene_4347_tx_42 1 + 255086 256027 . 2 548,349 0,593 -chrIX 255086 256027 HC_gene_4347_tx_43 1 + 255086 256027 . 2 745,132 0,810 -chrIX 255086 256027 HC_gene_4347_tx_44 1 + 255086 256027 . 2 778,84 0,858 -chrIX 255086 256027 HC_gene_4347_tx_45 1 + 255086 256027 . 2 745,118 0,824 -chrIX 255086 256027 HC_gene_4347_tx_46 1 + 255086 256027 . 2 403,443 0,499 -chrIX 255353 255934 HC_gene_4347_tx_47 1 + 255353 255934 . 1 582 0 -chrIX 255353 256027 HC_gene_4347_tx_48 151 + 255353 256027 . 1 675 0 -chrIX 255353 256027 HC_gene_4347_tx_49 1 + 255353 256027 . 2 179,443 0,232 -chrIX 255353 256027 HC_gene_4347_tx_50 1 + 255353 256027 . 2 76,532 0,143 -chrIX 255451 256027 HC_gene_4347_tx_51 163 + 255451 256027 . 1 577 0 -chrIX 255451 256027 HC_gene_4347_tx_52 1 + 255451 256027 . 2 391,132 0,445 -chrIX 255635 255934 HC_gene_4347_tx_53 1 + 255635 255934 . 1 300 0 -chrIX 255635 256027 HC_gene_4347_tx_54 440 + 255635 256027 . 1 393 0 -chrIX 255635 256027 HC_gene_4347_tx_55 1 + 255635 256027 . 2 88,248 0,145 -chrIX 255935 256527 HC_gene_4520_tx_1 4 - 255935 256527 . 1 593 0 -chrIX 255935 257095 HC_gene_4520_tx_2 11 - 255935 257095 . 2 620,69 0,1092 -chrIX 255935 257095 HC_gene_4520_tx_3 2 - 255935 257095 . 1 1161 0 -chrIX 256103 256527 HC_gene_4520_tx_23 432 - 256103 256527 . 1 425 0 -chrIX 256103 257095 HC_gene_4520_tx_4 2522 - 256103 257095 . 2 452,69 0,924 -chrIX 256103 257095 HC_gene_4520_tx_5 4 - 256103 257095 . 2 444,69 0,924 -chrIX 256103 257095 HC_gene_4520_tx_6 27 - 256103 257095 . 1 993 0 -chrIX 256103 257095 HC_gene_4520_tx_7 133 - 256103 257095 . 2 445,77 0,916 -chrIX 256103 257095 HC_gene_4520_tx_8 2 - 256103 257095 . 2 440,69 0,924 -chrIX 256103 257095 HC_gene_4520_tx_9 2 - 256103 257095 . 2 426,69 0,924 -chrIX 256103 257095 HC_gene_4520_tx_10 2 - 256103 257095 . 2 445,64 0,929 -chrIX 256103 257095 HC_gene_4520_tx_11 13 - 256103 257095 . 2 435,77 0,916 -chrIX 256103 257095 HC_gene_4520_tx_12 2 - 256103 257095 . 2 443,69 0,924 -chrIX 256103 257095 HC_gene_4520_tx_13 2 - 256103 257095 . 2 445,62 0,931 -chrIX 256103 257095 HC_gene_4520_tx_14 2 - 256103 257095 . 2 438,69 0,924 -chrIX 256103 257095 HC_gene_4520_tx_15 5 - 256103 257095 . 2 445,69 0,924 -chrIX 256103 257095 HC_gene_4520_tx_16 4 - 256103 257095 . 2 441,69 0,924 -chrIX 256103 257095 HC_gene_4520_tx_17 2 - 256103 257095 . 3 70,290,69 0,162,924 -chrIX 256103 257095 HC_gene_4520_tx_18 3 - 256103 257095 . 3 70,296,69 0,156,924 -chrIX 256103 257095 HC_gene_4520_tx_19 2 - 256103 257095 . 2 452,60 0,933 -chrIX 256103 257095 HC_gene_4520_tx_20 2 - 256103 257095 . 2 445,82 0,911 -chrIX 256103 257095 HC_gene_4520_tx_21 2 - 256103 257095 . 2 437,69 0,924 -chrIX 256103 257095 HC_gene_4520_tx_22 2 - 256103 257095 . 2 439,69 0,924 -chrIX 257708 258233 HC_gene_4521_tx_1 73 - 257708 258233 . 1 526 0 -chrIX 257708 258336 HC_gene_4521_tx_2 524 - 257708 258336 . 1 629 0 -chrIX 257817 258528 HC_gene_4348_tx_1 1 + 257817 258528 . 1 712 0 -chrIX 257836 258413 HC_gene_4348_tx_2 5 + 257836 258413 . 1 578 0 -chrIX 257836 258821 HC_gene_4349_tx_1 2 + 257836 258821 . 1 986 0 -chrIX 258480 258821 HC_gene_4349_tx_2 5 + 258480 258821 . 1 342 0 -chrIX 258566 258821 HC_gene_4349_tx_3 1 + 258566 258821 . 1 256 0 -chrIX 258568 258821 HC_gene_4349_tx_4 1 + 258568 258821 . 1 254 0 -chrIX 258569 258821 HC_gene_4349_tx_5 1 + 258569 258821 . 1 253 0 -chrIX 258577 258821 HC_gene_4349_tx_6 1 + 258577 258821 . 1 245 0 -chrIX 258578 258821 HC_gene_4349_tx_7 1 + 258578 258821 . 1 244 0 -chrIX 258597 258821 HC_gene_4349_tx_8 1 + 258597 258821 . 1 225 0 -chrIX 258598 258821 HC_gene_4349_tx_9 12 + 258598 258821 . 1 224 0 -chrIX 258598 259907 HC_gene_4350_tx_1 2 + 258598 259907 . 1 1310 0 -chrIX 258598 259907 HC_gene_4350_tx_2 1 + 258598 259907 . 2 125,688 0,622 -chrIX 258616 258821 HC_gene_4349_tx_10 1 + 258616 258821 . 1 206 0 -chrIX 258624 258821 HC_gene_4349_tx_11 1 + 258624 258821 . 1 198 0 -chrIX 258757 259241 MC_gene_4522_tx_1 1 - 258757 259241 . 1 485 0 -chrIX 258840 259907 HC_gene_4350_tx_3 34 + 258840 259907 . 1 1068 0 -chrIX 258971 259907 HC_gene_4350_tx_4 4 + 258971 259907 . 1 937 0 -chrIX 259180 259907 HC_gene_4350_tx_5 7 + 259180 259907 . 1 728 0 -chrIX 259753 260397 MC_gene_4523_tx_1 1 - 259753 260397 . 1 645 0 -chrIX 260096 260874 MC_gene_4524_tx_1 1 - 260096 260874 . 1 779 0 -chrIX 260151 260980 HC_gene_4351_tx_1 49 + 260151 260980 . 1 830 0 -chrIX 261131 262101 HC_gene_4352_tx_1 4 + 261131 262101 . 1 971 0 -chrIX 261131 265027 HC_gene_4352_tx_2 6 + 261131 265027 . 1 3897 0 -chrIX 261131 265114 HC_gene_4352_tx_3 1 + 261131 265114 . 1 3984 0 -chrIX 261538 262101 HC_gene_4352_tx_6 2 + 261538 262101 . 1 564 0 -chrIX 261538 265027 HC_gene_4352_tx_4 2 + 261538 265027 . 1 3490 0 -chrIX 261538 265114 HC_gene_4352_tx_5 1 + 261538 265114 . 1 3577 0 -chrIX 264930 265975 HC_gene_4525_tx_1 5 - 264930 265975 . 1 1046 0 -chrIX 264930 266153 HC_gene_4525_tx_2 10 - 264930 266153 . 1 1224 0 -chrIX 264930 266153 HC_gene_4525_tx_3 1 - 264930 266153 . 2 54,1084 0,140 -chrIX 264930 266153 HC_gene_4525_tx_4 1 - 264930 266153 . 2 219,953 0,271 -chrIX 264930 267086 HC_gene_4525_tx_5 3 - 264930 267086 . 1 2157 0 -chrIX 264930 267842 HC_gene_4525_tx_6 27 - 264930 267842 . 1 2913 0 -chrIX 264930 267842 HC_gene_4525_tx_7 1 - 264930 267842 . 4 731,826,116,942 0,910,1789,1971 -chrIX 264930 267842 HC_gene_4525_tx_8 1 - 264930 267842 . 2 2486,335 0,2578 -chrIX 264930 267842 HC_gene_4525_tx_9 1 - 264930 267842 . 2 1337,1439 0,1474 -chrIX 264930 267842 HC_gene_4525_tx_10 1 - 264930 267842 . 2 1503,1336 0,1577 -chrIX 264930 267842 HC_gene_4525_tx_11 1 - 264930 267842 . 2 1321,1357 0,1556 -chrIX 264930 267842 HC_gene_4525_tx_12 1 - 264930 267842 . 2 2102,711 0,2202 -chrIX 266117 267844 HC_gene_4526_tx_1 1 - 266117 267844 . 1 1728 0 -chrIX 268203 268480 HC_gene_4353_tx_1 1 + 268203 268480 . 1 278 0 -chrIX 268619 270673 HC_gene_4354_tx_1 24 + 268619 270673 . 1 2055 0 -chrIX 269044 270673 HC_gene_4354_tx_2 4 + 269044 270673 . 1 1630 0 -chrIX 269201 270682 LC_gene_4527_tx_1 1 - 269201 270682 . 1 1482 0 -chrIX 270822 271090 HC_gene_4355_tx_1 1 + 270822 271090 . 1 269 0 -chrIX 270879 271090 HC_gene_4355_tx_2 2 + 270879 271090 . 1 212 0 -chrIX 270945 271496 MC_gene_4528_tx_1 1 - 270945 271496 . 1 552 0 -chrIX 271062 272920 HC_gene_4356_tx_1 1 + 271062 272920 . 2 436,1355 0,504 -chrIX 271062 272920 HC_gene_4356_tx_2 1 + 271062 272920 . 1 1859 0 -chrIX 271062 273297 HC_gene_4356_tx_3 1 + 271062 273297 . 1 2236 0 -chrIX 272443 272920 HC_gene_4356_tx_4 9 + 272443 272920 . 1 478 0 -chrIX 272443 273297 HC_gene_4356_tx_5 1 + 272443 273297 . 1 855 0 -chrIX 272779 273455 HC_gene_4529_tx_1 1 - 272779 273455 . 1 677 0 -chrIX 272779 273765 HC_gene_4529_tx_3 1 - 272779 273765 . 1 987 0 -chrIX 272779 273873 HC_gene_4529_tx_4 26 - 272779 273873 . 1 1095 0 -chrIX 272834 273455 HC_gene_4529_tx_2 6 - 272834 273455 . 1 622 0 -chrIX 272834 273765 HC_gene_4529_tx_5 7 - 272834 273765 . 1 932 0 -chrIX 272834 273848 HC_gene_4529_tx_6 1 - 272834 273848 . 2 810,100 0,915 -chrIX 272834 273873 HC_gene_4529_tx_7 52 - 272834 273873 . 1 1040 0 -chrIX 273971 274362 HC_gene_4530_tx_1 43 - 273971 274362 . 1 392 0 -chrIX 273971 274476 HC_gene_4530_tx_2 34 - 273971 274476 . 1 506 0 -chrIX 273971 274729 HC_gene_4530_tx_3 48 - 273971 274729 . 1 759 0 -chrIX 273971 274947 HC_gene_4530_tx_4 297 - 273971 274947 . 1 977 0 -chrIX 274522 274981 LC_gene_4357_tx_1 1 + 274522 274981 . 1 460 0 -chrIX 274981 276331 MC_gene_4531_tx_1 1 - 274981 276331 . 1 1351 0 -chrIX 276497 277580 HC_gene_4358_tx_1 2 + 276497 277580 . 1 1084 0 -chrIX 276497 277583 HC_gene_4358_tx_2 2 + 276497 277583 . 1 1087 0 -chrIX 276497 277584 HC_gene_4358_tx_3 5 + 276497 277584 . 1 1088 0 -chrIX 276497 277585 HC_gene_4358_tx_4 2 + 276497 277585 . 1 1089 0 -chrIX 276497 277587 HC_gene_4358_tx_5 1 + 276497 277587 . 1 1091 0 -chrIX 276497 277588 HC_gene_4358_tx_6 9 + 276497 277588 . 1 1092 0 -chrIX 276497 277589 HC_gene_4358_tx_7 3 + 276497 277589 . 1 1093 0 -chrIX 276497 277592 HC_gene_4358_tx_8 16 + 276497 277592 . 1 1096 0 -chrIX 276497 277593 HC_gene_4358_tx_9 11 + 276497 277593 . 1 1097 0 -chrIX 276497 277595 HC_gene_4358_tx_10 2 + 276497 277595 . 1 1099 0 -chrIX 276497 277596 HC_gene_4358_tx_11 4 + 276497 277596 . 1 1100 0 -chrIX 276497 277597 HC_gene_4358_tx_12 1 + 276497 277597 . 1 1101 0 -chrIX 276497 277599 HC_gene_4358_tx_13 1 + 276497 277599 . 1 1103 0 -chrIX 276497 277600 HC_gene_4358_tx_14 4 + 276497 277600 . 1 1104 0 -chrIX 276497 277601 HC_gene_4358_tx_15 11 + 276497 277601 . 1 1105 0 -chrIX 276497 277602 HC_gene_4358_tx_16 2 + 276497 277602 . 1 1106 0 -chrIX 276497 277603 HC_gene_4358_tx_17 8 + 276497 277603 . 1 1107 0 -chrIX 276497 277604 HC_gene_4358_tx_18 3 + 276497 277604 . 1 1108 0 -chrIX 276497 277605 HC_gene_4358_tx_19 4 + 276497 277605 . 1 1109 0 -chrIX 276497 277606 HC_gene_4358_tx_20 6 + 276497 277606 . 1 1110 0 -chrIX 276497 277607 HC_gene_4358_tx_21 3 + 276497 277607 . 1 1111 0 -chrIX 276497 277608 HC_gene_4358_tx_22 12 + 276497 277608 . 1 1112 0 -chrIX 276497 277609 HC_gene_4358_tx_23 2 + 276497 277609 . 1 1113 0 -chrIX 276497 277610 HC_gene_4358_tx_24 2 + 276497 277610 . 1 1114 0 -chrIX 276497 277611 HC_gene_4358_tx_25 11 + 276497 277611 . 1 1115 0 -chrIX 276497 277612 HC_gene_4358_tx_26 8 + 276497 277612 . 1 1116 0 -chrIX 276497 277613 HC_gene_4358_tx_27 3 + 276497 277613 . 1 1117 0 -chrIX 276497 277614 HC_gene_4358_tx_28 1 + 276497 277614 . 1 1118 0 -chrIX 276497 277616 HC_gene_4358_tx_29 13 + 276497 277616 . 1 1120 0 -chrIX 276497 277617 HC_gene_4358_tx_30 1 + 276497 277617 . 1 1121 0 -chrIX 276497 277618 HC_gene_4358_tx_31 1 + 276497 277618 . 1 1122 0 -chrIX 276497 277619 HC_gene_4358_tx_32 1 + 276497 277619 . 1 1123 0 -chrIX 276497 277620 HC_gene_4358_tx_33 3 + 276497 277620 . 1 1124 0 -chrIX 276655 277583 HC_gene_4358_tx_34 1 + 276655 277583 . 1 929 0 -chrIX 276655 277585 HC_gene_4358_tx_35 1 + 276655 277585 . 1 931 0 -chrIX 276655 277588 HC_gene_4358_tx_36 1 + 276655 277588 . 1 934 0 -chrIX 276655 277597 HC_gene_4358_tx_37 1 + 276655 277597 . 1 943 0 -chrIX 276655 277598 HC_gene_4358_tx_38 1 + 276655 277598 . 1 944 0 -chrIX 276655 277602 HC_gene_4358_tx_39 1 + 276655 277602 . 1 948 0 -chrIX 276655 277604 HC_gene_4358_tx_40 2 + 276655 277604 . 1 950 0 -chrIX 276655 277606 HC_gene_4358_tx_41 1 + 276655 277606 . 1 952 0 -chrIX 276655 277611 HC_gene_4358_tx_42 1 + 276655 277611 . 1 957 0 -chrIX 276655 277613 HC_gene_4358_tx_43 1 + 276655 277613 . 1 959 0 -chrIX 276748 277581 HC_gene_4358_tx_44 1 + 276748 277581 . 1 834 0 -chrIX 276748 277588 HC_gene_4358_tx_45 1 + 276748 277588 . 1 841 0 -chrIX 276748 277592 HC_gene_4358_tx_46 3 + 276748 277592 . 1 845 0 -chrIX 276748 277593 HC_gene_4358_tx_47 1 + 276748 277593 . 1 846 0 -chrIX 276748 277601 HC_gene_4358_tx_48 1 + 276748 277601 . 1 854 0 -chrIX 276748 277602 HC_gene_4358_tx_49 1 + 276748 277602 . 1 855 0 -chrIX 276748 277603 HC_gene_4358_tx_50 1 + 276748 277603 . 1 856 0 -chrIX 276748 277606 HC_gene_4358_tx_51 1 + 276748 277606 . 1 859 0 -chrIX 276748 277611 HC_gene_4358_tx_52 4 + 276748 277611 . 1 864 0 -chrIX 276748 277612 HC_gene_4358_tx_53 2 + 276748 277612 . 1 865 0 -chrIX 276748 277613 HC_gene_4358_tx_54 1 + 276748 277613 . 1 866 0 -chrIX 276748 277614 HC_gene_4358_tx_55 1 + 276748 277614 . 1 867 0 -chrIX 276748 277616 HC_gene_4358_tx_56 4 + 276748 277616 . 1 869 0 -chrIX 276826 277588 HC_gene_4358_tx_57 2 + 276826 277588 . 1 763 0 -chrIX 276826 277589 HC_gene_4358_tx_58 1 + 276826 277589 . 1 764 0 -chrIX 276826 277592 HC_gene_4358_tx_59 1 + 276826 277592 . 1 767 0 -chrIX 276826 277593 HC_gene_4358_tx_60 1 + 276826 277593 . 1 768 0 -chrIX 276826 277597 HC_gene_4358_tx_61 1 + 276826 277597 . 1 772 0 -chrIX 276826 277598 HC_gene_4358_tx_62 1 + 276826 277598 . 1 773 0 -chrIX 276826 277601 HC_gene_4358_tx_63 1 + 276826 277601 . 1 776 0 -chrIX 276826 277608 HC_gene_4358_tx_64 2 + 276826 277608 . 1 783 0 -chrIX 276826 277611 HC_gene_4358_tx_65 1 + 276826 277611 . 1 786 0 -chrIX 276826 277615 HC_gene_4358_tx_66 1 + 276826 277615 . 1 790 0 -chrIX 276921 277594 HC_gene_4358_tx_67 1 + 276921 277594 . 1 674 0 -chrIX 276921 277612 HC_gene_4358_tx_68 1 + 276921 277612 . 1 692 0 -chrIX 277038 277588 HC_gene_4358_tx_69 1 + 277038 277588 . 1 551 0 -chrIX 277038 277592 HC_gene_4358_tx_70 2 + 277038 277592 . 1 555 0 -chrIX 277038 277593 HC_gene_4358_tx_71 1 + 277038 277593 . 1 556 0 -chrIX 277038 277601 HC_gene_4358_tx_72 1 + 277038 277601 . 1 564 0 -chrIX 277038 277602 HC_gene_4358_tx_73 1 + 277038 277602 . 1 565 0 -chrIX 277038 277608 HC_gene_4358_tx_74 1 + 277038 277608 . 1 571 0 -chrIX 277106 277584 HC_gene_4358_tx_75 1 + 277106 277584 . 1 479 0 -chrIX 277106 277588 HC_gene_4358_tx_76 4 + 277106 277588 . 1 483 0 -chrIX 277106 277592 HC_gene_4358_tx_77 1 + 277106 277592 . 1 487 0 -chrIX 277106 277598 HC_gene_4358_tx_78 1 + 277106 277598 . 1 493 0 -chrIX 277106 277601 HC_gene_4358_tx_79 1 + 277106 277601 . 1 496 0 -chrIX 277106 277602 HC_gene_4358_tx_80 1 + 277106 277602 . 1 497 0 -chrIX 277106 277605 HC_gene_4358_tx_81 1 + 277106 277605 . 1 500 0 -chrIX 277106 277607 HC_gene_4358_tx_82 1 + 277106 277607 . 1 502 0 -chrIX 277106 277608 HC_gene_4358_tx_83 1 + 277106 277608 . 1 503 0 -chrIX 277106 277610 HC_gene_4358_tx_84 2 + 277106 277610 . 1 505 0 -chrIX 277106 277611 HC_gene_4358_tx_85 2 + 277106 277611 . 1 506 0 -chrIX 277106 277612 HC_gene_4358_tx_86 2 + 277106 277612 . 1 507 0 -chrIX 277106 277620 HC_gene_4358_tx_87 1 + 277106 277620 . 1 515 0 -chrIX 277251 277586 HC_gene_4358_tx_88 2 + 277251 277586 . 1 336 0 -chrIX 277251 277592 HC_gene_4358_tx_89 2 + 277251 277592 . 1 342 0 -chrIX 277251 277593 HC_gene_4358_tx_90 1 + 277251 277593 . 1 343 0 -chrIX 277251 277595 HC_gene_4358_tx_91 1 + 277251 277595 . 1 345 0 -chrIX 277251 277603 HC_gene_4358_tx_92 1 + 277251 277603 . 1 353 0 -chrIX 277251 277611 HC_gene_4358_tx_93 2 + 277251 277611 . 1 361 0 -chrIX 277251 277612 HC_gene_4358_tx_94 4 + 277251 277612 . 1 362 0 -chrIX 277251 277617 HC_gene_4358_tx_95 1 + 277251 277617 . 1 367 0 -chrIX 277307 277588 HC_gene_4358_tx_96 1 + 277307 277588 . 1 282 0 -chrIX 277307 277593 HC_gene_4358_tx_97 1 + 277307 277593 . 1 287 0 -chrIX 277307 277595 HC_gene_4358_tx_98 1 + 277307 277595 . 1 289 0 -chrIX 277307 277601 HC_gene_4358_tx_99 1 + 277307 277601 . 1 295 0 -chrIX 277307 277602 HC_gene_4358_tx_100 1 + 277307 277602 . 1 296 0 -chrIX 277307 277608 HC_gene_4358_tx_101 1 + 277307 277608 . 1 302 0 -chrIX 277511 278259 LC_gene_4532_tx_1 1 - 277511 278259 . 1 749 0 -chrIX 277695 278232 HC_gene_4359_tx_1 1 + 277695 278232 . 1 538 0 -chrIX 277702 278232 HC_gene_4359_tx_2 1 + 277702 278232 . 1 531 0 -chrIX 277703 278232 HC_gene_4359_tx_3 1 + 277703 278232 . 1 530 0 -chrIX 277710 278232 HC_gene_4359_tx_4 1 + 277710 278232 . 1 523 0 -chrIX 277711 278232 HC_gene_4359_tx_5 2 + 277711 278232 . 1 522 0 -chrIX 277713 278165 HC_gene_4359_tx_6 22 + 277713 278165 . 1 453 0 -chrIX 277713 278232 HC_gene_4359_tx_7 95 + 277713 278232 . 1 520 0 -chrIX 277719 278232 HC_gene_4359_tx_8 1 + 277719 278232 . 1 514 0 -chrIX 277720 278232 HC_gene_4359_tx_9 4 + 277720 278232 . 1 513 0 -chrIX 277721 278232 HC_gene_4359_tx_10 7 + 277721 278232 . 1 512 0 -chrIX 277725 278232 HC_gene_4359_tx_11 2 + 277725 278232 . 1 508 0 -chrIX 277726 278232 HC_gene_4359_tx_12 5 + 277726 278232 . 1 507 0 -chrIX 277727 278232 HC_gene_4359_tx_13 2 + 277727 278232 . 1 506 0 -chrIX 277730 278232 HC_gene_4359_tx_14 2 + 277730 278232 . 1 503 0 -chrIX 277731 278232 HC_gene_4359_tx_15 6 + 277731 278232 . 1 502 0 -chrIX 277733 278232 HC_gene_4359_tx_16 2 + 277733 278232 . 1 500 0 -chrIX 277734 278232 HC_gene_4359_tx_17 5 + 277734 278232 . 1 499 0 -chrIX 277735 278232 HC_gene_4359_tx_18 1 + 277735 278232 . 1 498 0 -chrIX 277736 278232 HC_gene_4359_tx_19 2 + 277736 278232 . 1 497 0 -chrIX 277737 278232 HC_gene_4359_tx_20 1 + 277737 278232 . 1 496 0 -chrIX 277738 278232 HC_gene_4359_tx_21 1 + 277738 278232 . 1 495 0 -chrIX 277739 278232 HC_gene_4359_tx_22 1 + 277739 278232 . 1 494 0 -chrIX 277741 278232 HC_gene_4359_tx_23 2 + 277741 278232 . 1 492 0 -chrIX 277742 278232 HC_gene_4359_tx_24 5 + 277742 278232 . 1 491 0 -chrIX 277748 278232 HC_gene_4359_tx_25 1 + 277748 278232 . 1 485 0 -chrIX 277751 278232 HC_gene_4359_tx_26 2 + 277751 278232 . 1 482 0 -chrIX 277752 278232 HC_gene_4359_tx_27 1 + 277752 278232 . 1 481 0 -chrIX 277753 278232 HC_gene_4359_tx_28 1 + 277753 278232 . 1 480 0 -chrIX 277758 278232 HC_gene_4359_tx_29 1 + 277758 278232 . 1 475 0 -chrIX 277762 278232 HC_gene_4359_tx_30 1 + 277762 278232 . 1 471 0 -chrIX 277763 278232 HC_gene_4359_tx_31 1 + 277763 278232 . 1 470 0 -chrIX 277764 278232 HC_gene_4359_tx_32 1 + 277764 278232 . 1 469 0 -chrIX 277766 278232 HC_gene_4359_tx_33 6 + 277766 278232 . 1 467 0 -chrIX 277767 278232 HC_gene_4359_tx_34 1 + 277767 278232 . 1 466 0 -chrIX 277768 278232 HC_gene_4359_tx_35 2 + 277768 278232 . 1 465 0 -chrIX 277769 278232 HC_gene_4359_tx_36 2 + 277769 278232 . 1 464 0 -chrIX 277774 278232 HC_gene_4359_tx_37 2 + 277774 278232 . 1 459 0 -chrIX 277775 278232 HC_gene_4359_tx_38 1 + 277775 278232 . 1 458 0 -chrIX 277778 278232 HC_gene_4359_tx_39 1 + 277778 278232 . 1 455 0 -chrIX 277780 278232 HC_gene_4359_tx_40 1 + 277780 278232 . 1 453 0 -chrIX 277782 278232 HC_gene_4359_tx_41 1 + 277782 278232 . 1 451 0 -chrIX 278212 279966 HC_gene_4360_tx_1 3 + 278212 279966 . 1 1755 0 -chrIX 278373 279966 HC_gene_4360_tx_2 61 + 278373 279966 . 1 1594 0 -chrIX 278373 279966 HC_gene_4360_tx_3 1 + 278373 279966 . 2 1233,306 0,1288 -chrIX 278373 279966 HC_gene_4360_tx_4 1 + 278373 279966 . 2 1365,130 0,1464 -chrIX 278373 280081 HC_gene_4360_tx_5 2 + 278373 280081 . 1 1709 0 -chrIX 278820 279966 HC_gene_4360_tx_6 8 + 278820 279966 . 1 1147 0 -chrIX 278820 280081 HC_gene_4360_tx_7 1 + 278820 280081 . 1 1262 0 -chrIX 278982 279966 HC_gene_4360_tx_8 11 + 278982 279966 . 1 985 0 -chrIX 278982 280081 HC_gene_4360_tx_9 1 + 278982 280081 . 1 1100 0 -chrIX 279393 279966 HC_gene_4360_tx_10 16 + 279393 279966 . 1 574 0 -chrIX 279979 282594 HC_gene_4533_tx_1 1 - 279979 282594 . 2 1311,1254 0,1362 -chrIX 279979 282767 HC_gene_4533_tx_2 1 - 279979 282767 . 1 2789 0 -chrIX 279979 282891 HC_gene_4533_tx_3 7 - 279979 282891 . 1 2913 0 -chrIX 279979 282891 HC_gene_4533_tx_4 1 - 279979 282891 . 2 1281,1494 0,1419 -chrIX 280044 282891 HC_gene_4533_tx_5 1 - 280044 282891 . 2 1260,220 0,2628 -chrIX 280044 282891 HC_gene_4533_tx_6 2 - 280044 282891 . 1 2848 0 -chrIX 283021 285020 MC_gene_4534_tx_1 1 - 283021 285020 . 1 2000 0 -chrIX 283099 284621 MC_gene_4361_tx_1 1 + 283099 284621 . 1 1523 0 -chrIX 283361 284720 MC_gene_4362_tx_1 1 + 283361 284720 . 1 1360 0 -chrIX 285515 287525 HC_gene_4363_tx_1 10 + 285515 287525 . 1 2011 0 -chrIX 285515 287525 HC_gene_4363_tx_2 1 + 285515 287525 . 2 509,1388 0,623 -chrIX 285515 287597 HC_gene_4363_tx_3 1 + 285515 287597 . 2 158,1777 0,306 -chrIX 285515 287597 HC_gene_4363_tx_4 8 + 285515 287597 . 1 2083 0 -chrIX 285515 287751 HC_gene_4363_tx_5 2 + 285515 287751 . 1 2237 0 -chrIX 286492 287525 HC_gene_4363_tx_6 3 + 286492 287525 . 1 1034 0 -chrIX 286492 287597 HC_gene_4363_tx_7 3 + 286492 287597 . 1 1106 0 -chrIX 286824 287525 HC_gene_4363_tx_8 5 + 286824 287525 . 1 702 0 -chrIX 286824 287597 HC_gene_4363_tx_9 3 + 286824 287597 . 1 774 0 -chrIX 286824 287751 HC_gene_4363_tx_10 3 + 286824 287751 . 1 928 0 -chrIX 287435 288084 HC_gene_4535_tx_1 3 - 287435 288084 . 1 650 0 -chrIX 287435 288135 HC_gene_4535_tx_2 5 - 287435 288135 . 1 701 0 -chrIX 287435 288768 HC_gene_4535_tx_16 3 - 287435 288768 . 1 1334 0 -chrIX 287435 289009 HC_gene_4535_tx_17 30 - 287435 289009 . 1 1575 0 -chrIX 287435 289030 HC_gene_4535_tx_18 1 - 287435 289030 . 2 612,909 0,687 -chrIX 287502 289009 HC_gene_4535_tx_19 1 - 287502 289009 . 1 1508 0 -chrIX 287506 288768 HC_gene_4535_tx_20 1 - 287506 288768 . 1 1263 0 -chrIX 287512 289009 HC_gene_4535_tx_21 2 - 287512 289009 . 1 1498 0 -chrIX 287513 289009 HC_gene_4535_tx_22 1 - 287513 289009 . 1 1497 0 -chrIX 287514 288135 HC_gene_4535_tx_3 1 - 287514 288135 . 1 622 0 -chrIX 287514 288768 HC_gene_4535_tx_23 1 - 287514 288768 . 1 1255 0 -chrIX 287514 289009 HC_gene_4535_tx_24 2 - 287514 289009 . 1 1496 0 -chrIX 287515 289009 HC_gene_4535_tx_25 1 - 287515 289009 . 1 1495 0 -chrIX 287517 288084 HC_gene_4535_tx_4 1 - 287517 288084 . 1 568 0 -chrIX 287527 289009 HC_gene_4535_tx_26 1 - 287527 289009 . 2 579,369 0,1114 -chrIX 287527 289009 HC_gene_4535_tx_27 1 - 287527 289009 . 1 1483 0 -chrIX 287535 288135 HC_gene_4535_tx_5 1 - 287535 288135 . 1 601 0 -chrIX 287536 288135 HC_gene_4535_tx_6 1 - 287536 288135 . 1 600 0 -chrIX 287537 289009 HC_gene_4535_tx_28 1 - 287537 289009 . 1 1473 0 -chrIX 287545 289009 HC_gene_4535_tx_29 1 - 287545 289009 . 1 1465 0 -chrIX 287593 288135 HC_gene_4535_tx_7 1 - 287593 288135 . 1 543 0 -chrIX 287594 289009 HC_gene_4535_tx_30 1 - 287594 289009 . 1 1416 0 -chrIX 287600 289009 HC_gene_4535_tx_31 1 - 287600 289009 . 1 1410 0 -chrIX 287617 289009 HC_gene_4535_tx_32 1 - 287617 289009 . 1 1393 0 -chrIX 287636 289009 HC_gene_4535_tx_33 1 - 287636 289009 . 1 1374 0 -chrIX 287637 289009 HC_gene_4535_tx_34 1 - 287637 289009 . 1 1373 0 -chrIX 287646 289009 HC_gene_4535_tx_35 1 - 287646 289009 . 1 1364 0 -chrIX 287650 288135 HC_gene_4535_tx_8 1 - 287650 288135 . 1 486 0 -chrIX 287663 289009 HC_gene_4535_tx_36 3 - 287663 289009 . 1 1347 0 -chrIX 287664 289009 HC_gene_4535_tx_37 2 - 287664 289009 . 1 1346 0 -chrIX 287666 289009 HC_gene_4535_tx_38 1 - 287666 289009 . 3 887,134,129 0,964,1215 -chrIX 287667 289009 HC_gene_4535_tx_39 1 - 287667 289009 . 1 1343 0 -chrIX 287668 288135 HC_gene_4535_tx_9 1 - 287668 288135 . 1 468 0 -chrIX 287668 289009 HC_gene_4535_tx_40 2 - 287668 289009 . 1 1342 0 -chrIX 287674 288084 HC_gene_4535_tx_10 1 - 287674 288084 . 1 411 0 -chrIX 287674 289009 HC_gene_4535_tx_41 5 - 287674 289009 . 1 1336 0 -chrIX 287675 289009 HC_gene_4535_tx_42 2 - 287675 289009 . 1 1335 0 -chrIX 287676 289009 HC_gene_4535_tx_43 1 - 287676 289009 . 1 1334 0 -chrIX 287677 289009 HC_gene_4535_tx_44 1 - 287677 289009 . 1 1333 0 -chrIX 287681 289009 HC_gene_4535_tx_45 1 - 287681 289009 . 1 1329 0 -chrIX 287682 288084 HC_gene_4535_tx_11 1 - 287682 288084 . 1 403 0 -chrIX 287682 289009 HC_gene_4535_tx_46 3 - 287682 289009 . 1 1328 0 -chrIX 287683 289009 HC_gene_4535_tx_47 2 - 287683 289009 . 1 1327 0 -chrIX 287688 289009 HC_gene_4535_tx_48 1 - 287688 289009 . 1 1322 0 -chrIX 287693 288768 HC_gene_4535_tx_49 1 - 287693 288768 . 1 1076 0 -chrIX 287695 288135 HC_gene_4535_tx_12 1 - 287695 288135 . 1 441 0 -chrIX 287697 289009 HC_gene_4535_tx_50 1 - 287697 289009 . 1 1313 0 -chrIX 287698 289009 HC_gene_4535_tx_51 1 - 287698 289009 . 1 1312 0 -chrIX 287700 289009 HC_gene_4535_tx_52 1 - 287700 289009 . 1 1310 0 -chrIX 287702 289009 HC_gene_4535_tx_53 1 - 287702 289009 . 1 1308 0 -chrIX 287705 289009 HC_gene_4535_tx_54 1 - 287705 289009 . 1 1305 0 -chrIX 287706 289009 HC_gene_4535_tx_55 1 - 287706 289009 . 1 1304 0 -chrIX 287707 288768 HC_gene_4535_tx_56 1 - 287707 288768 . 1 1062 0 -chrIX 287709 289009 HC_gene_4535_tx_57 1 - 287709 289009 . 1 1301 0 -chrIX 287724 288135 HC_gene_4535_tx_13 1 - 287724 288135 . 1 412 0 -chrIX 287724 289009 HC_gene_4535_tx_58 1 - 287724 289009 . 1 1286 0 -chrIX 287729 288135 HC_gene_4535_tx_14 1 - 287729 288135 . 1 407 0 -chrIX 287730 289009 HC_gene_4535_tx_59 1 - 287730 289009 . 1 1280 0 -chrIX 287735 289009 HC_gene_4535_tx_60 1 - 287735 289009 . 1 1275 0 -chrIX 287738 289009 HC_gene_4535_tx_61 1 - 287738 289009 . 1 1272 0 -chrIX 287740 288084 HC_gene_4535_tx_15 1 - 287740 288084 . 1 345 0 -chrIX 287740 289009 HC_gene_4535_tx_62 5 - 287740 289009 . 1 1270 0 -chrIX 289173 289665 HC_gene_4536_tx_1 44 - 289173 289665 . 1 493 0 -chrIX 289173 289915 HC_gene_4536_tx_2 27 - 289173 289915 . 1 743 0 -chrIX 289173 289982 HC_gene_4536_tx_3 4 - 289173 289982 . 1 810 0 -chrIX 289173 290103 HC_gene_4536_tx_4 172 - 289173 290103 . 1 931 0 -chrIX 289290 290272 HC_gene_4364_tx_1 7 + 289290 290272 . 1 983 0 -chrIX 289290 290671 HC_gene_4364_tx_2 1 + 289290 290671 . 1 1382 0 -chrIX 290230 291778 HC_gene_4537_tx_1 1 - 290230 291778 . 1 1549 0 -chrIX 290239 290661 HC_gene_4537_tx_42 1 - 290239 290661 . 1 423 0 -chrIX 290239 291358 HC_gene_4537_tx_2 1 - 290239 291358 . 1 1120 0 -chrIX 290239 291778 HC_gene_4537_tx_3 6 - 290239 291778 . 1 1540 0 -chrIX 290241 291471 HC_gene_4537_tx_4 1 - 290241 291471 . 1 1231 0 -chrIX 290242 290661 HC_gene_4537_tx_43 2 - 290242 290661 . 1 420 0 -chrIX 290242 291015 HC_gene_4537_tx_48 4 - 290242 291015 . 1 774 0 -chrIX 290242 291471 HC_gene_4537_tx_5 1 - 290242 291471 . 1 1230 0 -chrIX 290242 291471 HC_gene_4537_tx_6 1 - 290242 291471 . 2 997,175 0,1055 -chrIX 290242 291778 HC_gene_4537_tx_7 9 - 290242 291778 . 1 1537 0 -chrIX 290243 291778 HC_gene_4537_tx_8 1 - 290243 291778 . 1 1536 0 -chrIX 290244 291358 HC_gene_4537_tx_9 1 - 290244 291358 . 1 1115 0 -chrIX 290244 291778 HC_gene_4537_tx_10 2 - 290244 291778 . 1 1535 0 -chrIX 290245 291778 HC_gene_4537_tx_11 4 - 290245 291778 . 1 1534 0 -chrIX 290246 291015 HC_gene_4537_tx_49 1 - 290246 291015 . 1 770 0 -chrIX 290246 291778 HC_gene_4537_tx_12 2 - 290246 291778 . 1 1533 0 -chrIX 290248 291778 HC_gene_4537_tx_13 2 - 290248 291778 . 1 1531 0 -chrIX 290249 290661 HC_gene_4537_tx_44 1 - 290249 290661 . 1 413 0 -chrIX 290249 291015 HC_gene_4537_tx_50 2 - 290249 291015 . 1 767 0 -chrIX 290249 291471 HC_gene_4537_tx_14 1 - 290249 291471 . 1 1223 0 -chrIX 290249 291778 HC_gene_4537_tx_15 6 - 290249 291778 . 1 1530 0 -chrIX 290250 290661 HC_gene_4537_tx_45 1 - 290250 290661 . 1 412 0 -chrIX 290250 291358 HC_gene_4537_tx_16 1 - 290250 291358 . 1 1109 0 -chrIX 290250 291471 HC_gene_4537_tx_17 1 - 290250 291471 . 1 1222 0 -chrIX 290250 291778 HC_gene_4537_tx_18 12 - 290250 291778 . 1 1529 0 -chrIX 290252 291015 HC_gene_4537_tx_51 1 - 290252 291015 . 1 764 0 -chrIX 290252 291358 HC_gene_4537_tx_19 1 - 290252 291358 . 1 1107 0 -chrIX 290252 291778 HC_gene_4537_tx_20 1 - 290252 291778 . 1 1527 0 -chrIX 290254 291015 HC_gene_4537_tx_52 2 - 290254 291015 . 1 762 0 -chrIX 290254 291358 HC_gene_4537_tx_21 1 - 290254 291358 . 1 1105 0 -chrIX 290254 291778 HC_gene_4537_tx_22 3 - 290254 291778 . 1 1525 0 -chrIX 290256 291778 HC_gene_4537_tx_23 2 - 290256 291778 . 1 1523 0 -chrIX 290257 291778 HC_gene_4537_tx_24 2 - 290257 291778 . 1 1522 0 -chrIX 290258 290661 HC_gene_4537_tx_46 2 - 290258 290661 . 1 404 0 -chrIX 290258 291015 HC_gene_4537_tx_53 2 - 290258 291015 . 1 758 0 -chrIX 290258 291778 HC_gene_4537_tx_25 8 - 290258 291778 . 1 1521 0 -chrIX 290259 291471 HC_gene_4537_tx_26 1 - 290259 291471 . 1 1213 0 -chrIX 290260 291778 HC_gene_4537_tx_27 1 - 290260 291778 . 1 1519 0 -chrIX 290261 290661 HC_gene_4537_tx_47 2 - 290261 290661 . 1 401 0 -chrIX 290261 291015 HC_gene_4537_tx_54 1 - 290261 291015 . 1 755 0 -chrIX 290261 291778 HC_gene_4537_tx_28 5 - 290261 291778 . 1 1518 0 -chrIX 290264 291358 HC_gene_4537_tx_29 1 - 290264 291358 . 1 1095 0 -chrIX 290266 291778 HC_gene_4537_tx_30 2 - 290266 291778 . 1 1513 0 -chrIX 290267 291778 HC_gene_4537_tx_31 1 - 290267 291778 . 1 1512 0 -chrIX 290270 291778 HC_gene_4537_tx_32 1 - 290270 291778 . 2 1369,73 0,1436 -chrIX 290275 291778 HC_gene_4537_tx_33 2 - 290275 291778 . 1 1504 0 -chrIX 290278 291015 HC_gene_4537_tx_55 1 - 290278 291015 . 1 738 0 -chrIX 290281 291471 HC_gene_4537_tx_34 1 - 290281 291471 . 1 1191 0 -chrIX 290281 291778 HC_gene_4537_tx_35 1 - 290281 291778 . 1 1498 0 -chrIX 290283 291471 HC_gene_4537_tx_36 1 - 290283 291471 . 1 1189 0 -chrIX 290287 291778 HC_gene_4537_tx_37 1 - 290287 291778 . 1 1492 0 -chrIX 290290 291358 HC_gene_4537_tx_38 1 - 290290 291358 . 1 1069 0 -chrIX 290290 291778 HC_gene_4537_tx_39 1 - 290290 291778 . 2 634,801 0,688 -chrIX 290292 291778 HC_gene_4537_tx_40 1 - 290292 291778 . 1 1487 0 -chrIX 290293 291778 HC_gene_4537_tx_41 3 - 290293 291778 . 1 1486 0 -chrIX 292463 295815 HC_gene_4365_tx_1 4 + 292463 295815 . 1 3353 0 -chrIX 292463 295880 HC_gene_4365_tx_2 1 + 292463 295880 . 1 3418 0 -chrIX 294748 295815 HC_gene_4365_tx_3 1 + 294748 295815 . 1 1068 0 -chrIX 294748 295880 HC_gene_4365_tx_4 5 + 294748 295880 . 1 1133 0 -chrIX 295852 297097 HC_gene_4538_tx_1 1 - 295852 297097 . 1 1246 0 -chrIX 295852 297808 HC_gene_4538_tx_3 1 - 295852 297808 . 2 864,1046 0,911 -chrIX 295962 296509 HC_gene_4538_tx_5 7 - 295962 296509 . 1 548 0 -chrIX 295962 297097 HC_gene_4538_tx_2 4 - 295962 297097 . 1 1136 0 -chrIX 295962 297808 HC_gene_4538_tx_4 6 - 295962 297808 . 1 1847 0 -chrIX 295962 299022 HC_gene_4538_tx_6 1 - 295962 299022 . 1 3061 0 -chrIX 299332 299831 HC_gene_4539_tx_1 1 - 299332 299831 . 1 500 0 -chrIX 299332 300066 HC_gene_4539_tx_2 8 - 299332 300066 . 1 735 0 -chrIX 300429 301576 LC_gene_4366_tx_1 1 + 300429 301576 . 1 1148 0 -chrIX 300445 301124 HC_gene_4540_tx_1 3 - 300445 301124 . 1 680 0 -chrIX 300445 301363 HC_gene_4540_tx_2 10 - 300445 301363 . 1 919 0 -chrIX 301938 303394 HC_gene_4367_tx_1 2 + 301938 303394 . 1 1457 0 -chrIX 301938 303669 HC_gene_4367_tx_2 1 + 301938 303669 . 1 1732 0 -chrIX 303592 304148 HC_gene_4541_tx_1 209 - 303592 304148 . 1 557 0 -chrIX 303592 307966 HC_gene_4541_tx_2 1 - 303592 307966 . 1 4375 0 -chrIX 304288 307966 HC_gene_4541_tx_3 1 - 304288 307966 . 1 3679 0 -chrIX 304362 307966 HC_gene_4541_tx_4 1 - 304362 307966 . 1 3605 0 -chrIX 304365 307966 HC_gene_4541_tx_5 1 - 304365 307966 . 1 3602 0 -chrIX 304381 305078 MC_gene_4368_tx_1 1 + 304381 305078 . 1 698 0 -chrIX 306362 307438 LC_gene_4369_tx_1 1 + 306362 307438 . 1 1077 0 -chrIX 308203 308594 LC_gene_4370_tx_1 1 + 308203 308594 . 1 392 0 -chrIX 308490 309222 HC_gene_4542_tx_1 8 - 308490 309222 . 1 733 0 -chrIX 308490 310442 HC_gene_4542_tx_2 11 - 308490 310442 . 1 1953 0 -chrIX 308490 310593 HC_gene_4542_tx_3 2 - 308490 310593 . 1 2104 0 -chrIX 309194 310442 HC_gene_4542_tx_4 1 - 309194 310442 . 1 1249 0 -chrIX 309194 310593 HC_gene_4542_tx_5 1 - 309194 310593 . 1 1400 0 -chrIX 309216 310422 HC_gene_4542_tx_6 1 - 309216 310422 . 1 1207 0 -chrIX 309217 310442 HC_gene_4542_tx_7 1 - 309217 310442 . 1 1226 0 -chrIX 309223 310442 HC_gene_4542_tx_8 1 - 309223 310442 . 1 1220 0 -chrIX 309236 310442 HC_gene_4542_tx_9 1 - 309236 310442 . 1 1207 0 -chrIX 309237 310442 HC_gene_4542_tx_10 1 - 309237 310442 . 1 1206 0 -chrIX 309247 310442 HC_gene_4542_tx_11 1 - 309247 310442 . 1 1196 0 -chrIX 309248 310442 HC_gene_4542_tx_12 1 - 309248 310442 . 1 1195 0 -chrIX 309251 310442 HC_gene_4542_tx_13 1 - 309251 310442 . 1 1192 0 -chrIX 309256 310442 HC_gene_4542_tx_14 1 - 309256 310442 . 1 1187 0 -chrIX 309256 310593 HC_gene_4542_tx_15 1 - 309256 310593 . 1 1338 0 -chrIX 309270 310442 HC_gene_4542_tx_16 1 - 309270 310442 . 1 1173 0 -chrIX 309274 310442 HC_gene_4542_tx_17 1 - 309274 310442 . 1 1169 0 -chrIX 309277 310442 HC_gene_4542_tx_18 1 - 309277 310442 . 1 1166 0 -chrIX 309292 310442 HC_gene_4542_tx_19 1 - 309292 310442 . 1 1151 0 -chrIX 309293 310442 HC_gene_4542_tx_20 1 - 309293 310442 . 1 1150 0 -chrIX 309305 310442 HC_gene_4542_tx_21 1 - 309305 310442 . 1 1138 0 -chrIX 309309 310442 HC_gene_4542_tx_22 1 - 309309 310442 . 1 1134 0 -chrIX 309322 310442 HC_gene_4542_tx_23 7 - 309322 310442 . 1 1121 0 -chrIX 309322 310593 HC_gene_4542_tx_24 1 - 309322 310593 . 1 1272 0 -chrIX 310124 310701 LC_gene_4371_tx_1 1 + 310124 310701 . 1 578 0 -chrIX 311055 312692 HC_gene_4372_tx_1 44 + 311055 312692 . 1 1638 0 -chrIX 311055 312692 HC_gene_4372_tx_2 1 + 311055 312692 . 2 660,791 0,847 -chrIX 311055 312692 HC_gene_4372_tx_3 1 + 311055 312692 . 2 619,706 0,932 -chrIX 311055 312692 HC_gene_4372_tx_4 1 + 311055 312692 . 2 206,1330 0,308 -chrIX 311351 312692 HC_gene_4372_tx_5 5 + 311351 312692 . 1 1342 0 -chrIX 311843 312560 LC_gene_4543_tx_1 1 - 311843 312560 . 1 718 0 -chrIX 312219 312692 HC_gene_4372_tx_6 34 + 312219 312692 . 1 474 0 -chrIX 312869 313995 HC_gene_4373_tx_1 114 + 312869 313995 . 1 1127 0 -chrIX 312869 313995 HC_gene_4373_tx_2 1 + 312869 313995 . 2 1027,55 0,1072 -chrIX 312869 313995 HC_gene_4373_tx_3 1 + 312869 313995 . 2 355,464 0,663 -chrIX 312869 313995 HC_gene_4373_tx_4 1 + 312869 313995 . 2 60,525 0,602 -chrIX 312869 314126 HC_gene_4373_tx_5 10 + 312869 314126 . 1 1258 0 -chrIX 312869 314538 HC_gene_4373_tx_6 1 + 312869 314538 . 1 1670 0 -chrIX 313612 313995 HC_gene_4373_tx_7 19 + 313612 313995 . 1 384 0 -chrIX 313612 314126 HC_gene_4373_tx_8 1 + 313612 314126 . 1 515 0 -chrIX 313842 313995 HC_gene_4373_tx_9 1 + 313842 313995 . 1 154 0 -chrIX 313842 314538 HC_gene_4373_tx_10 1 + 313842 314538 . 1 697 0 -chrIX 313897 314567 HC_gene_4544_tx_1 8 - 313897 314567 . 1 671 0 -chrIX 313897 314738 HC_gene_4544_tx_2 3 - 313897 314738 . 1 842 0 -chrIX 313897 314908 HC_gene_4544_tx_3 50 - 313897 314908 . 1 1012 0 -chrIX 315072 316309 HC_gene_4374_tx_1 48 + 315072 316309 . 1 1238 0 -chrIX 315072 316309 HC_gene_4374_tx_2 1 + 315072 316309 . 2 731,458 0,780 -chrIX 315072 316309 HC_gene_4374_tx_3 1 + 315072 316309 . 2 325,877 0,361 -chrIX 315072 316309 HC_gene_4374_tx_4 1 + 315072 316309 . 2 862,336 0,902 -chrIX 315530 316309 HC_gene_4374_tx_5 4 + 315530 316309 . 1 780 0 -chrIX 315753 316309 HC_gene_4374_tx_6 8 + 315753 316309 . 1 557 0 -chrIX 316743 318022 HC_gene_4375_tx_1 13 + 316743 318022 . 2 29,851 0,429 -chrIX 316743 318022 HC_gene_4375_tx_2 44 + 316743 318022 . 1 1280 0 -chrIX 317159 318022 HC_gene_4375_tx_3 2655 + 317159 318022 . 1 864 0 -chrIX 317409 318022 HC_gene_4375_tx_4 45 + 317409 318022 . 1 614 0 -chrIX 317537 318022 HC_gene_4375_tx_5 732 + 317537 318022 . 1 486 0 -chrIX 317769 318022 HC_gene_4375_tx_6 161 + 317769 318022 . 1 254 0 -chrIX 318102 321036 HC_gene_4545_tx_1 3 - 318102 321036 . 1 2935 0 -chrIX 318188 319474 MC_gene_4376_tx_1 1 + 318188 319474 . 2 392,819 0,468 -chrIX 321429 321989 HC_gene_4377_tx_1 194 + 321429 321989 . 1 561 0 -chrIX 321429 322371 HC_gene_4377_tx_2 3 + 321429 322371 . 1 943 0 -chrIX 321581 321989 HC_gene_4377_tx_3 21 + 321581 321989 . 1 409 0 -chrIX 321619 321970 MC_gene_4546_tx_1 1 - 321619 321970 . 1 352 0 -chrIX 323050 324206 HC_gene_4378_tx_1 1 + 323050 324206 . 1 1157 0 -chrIX 324184 324360 LC_gene_4547_tx_1 1 - 324184 324360 . 1 177 0 -chrIX 324614 325539 MC_gene_4379_tx_1 1 + 324614 325539 . 1 926 0 -chrIX 325004 325489 HC_gene_4548_tx_1 10 - 325004 325489 . 1 486 0 -chrIX 325004 325606 HC_gene_4548_tx_2 59 - 325004 325606 . 1 603 0 -chrIX 325951 328104 HC_gene_4380_tx_1 26 + 325951 328104 . 1 2154 0 -chrIX 325951 328104 HC_gene_4380_tx_2 1 + 325951 328104 . 2 31,1710 0,444 -chrIX 328008 329178 HC_gene_4549_tx_1 3 - 328008 329178 . 1 1171 0 -chrIX 328008 329178 HC_gene_4549_tx_2 1 - 328008 329178 . 2 562,503 0,668 -chrIX 328008 330414 HC_gene_4549_tx_3 3 - 328008 330414 . 1 2407 0 -chrIX 328008 332534 HC_gene_4549_tx_4 1 - 328008 332534 . 1 4527 0 -chrIX 329816 331634 MC_gene_4381_tx_1 1 + 329816 331634 . 1 1819 0 -chrIX 333400 334665 HC_gene_4382_tx_1 3 + 333400 334665 . 1 1266 0 -chrIX 333704 334665 HC_gene_4382_tx_2 1 + 333704 334665 . 2 498,263 0,699 -chrIX 333704 334665 HC_gene_4382_tx_3 278 + 333704 334665 . 1 962 0 -chrIX 333704 334665 HC_gene_4382_tx_4 1 + 333704 334665 . 2 531,373 0,589 -chrIX 333704 334665 HC_gene_4382_tx_5 1 + 333704 334665 . 2 33,840 0,122 -chrIX 333704 334665 HC_gene_4382_tx_6 1 + 333704 334665 . 2 423,477 0,485 -chrIX 333704 334665 HC_gene_4382_tx_7 1 + 333704 334665 . 2 395,497 0,465 -chrIX 333704 334665 HC_gene_4382_tx_8 1 + 333704 334665 . 2 423,367 0,595 -chrIX 333704 334665 HC_gene_4382_tx_9 1 + 333704 334665 . 2 294,381 0,581 -chrIX 333704 334665 HC_gene_4382_tx_10 1 + 333704 334665 . 2 483,322 0,640 -chrIX 333704 334665 HC_gene_4382_tx_11 1 + 333704 334665 . 2 295,497 0,465 -chrIX 334508 336241 HC_gene_4550_tx_1 1 - 334508 336241 . 1 1734 0 -chrIX 334844 335718 HC_gene_4383_tx_1 169 + 334844 335718 . 1 875 0 -chrIX 335623 336241 HC_gene_4550_tx_2 60 - 335623 336241 . 1 619 0 -chrIX 336890 337824 HC_gene_4551_tx_1 2 - 336890 337824 . 1 935 0 -chrIX 337313 337543 HC_gene_4551_tx_2 1 - 337313 337543 . 1 231 0 -chrIX 337313 337824 HC_gene_4551_tx_3 2 - 337313 337824 . 1 512 0 -chrIX 337313 338200 HC_gene_4551_tx_4 1 - 337313 338200 . 1 888 0 -chrIX 338282 341664 HC_gene_4384_tx_1 1 + 338282 341664 . 1 3383 0 -chrIX 338368 340960 MC_gene_4552_tx_1 1 - 338368 340960 . 1 2593 0 -chrIX 338510 341664 HC_gene_4384_tx_2 3 + 338510 341664 . 1 3155 0 -chrIX 339331 341664 HC_gene_4384_tx_3 38 + 339331 341664 . 1 2334 0 -chrIX 339331 341664 HC_gene_4384_tx_4 1 + 339331 341664 . 2 1121,1110 0,1224 -chrIX 339331 341664 HC_gene_4384_tx_5 1 + 339331 341664 . 3 284,1255,406 0,532,1928 -chrIX 339331 341664 HC_gene_4384_tx_6 1 + 339331 341664 . 2 1211,1039 0,1295 -chrIX 339331 341664 HC_gene_4384_tx_7 1 + 339331 341664 . 2 1196,1052 0,1282 -chrIX 339331 341664 HC_gene_4384_tx_8 1 + 339331 341664 . 2 1211,1056 0,1278 -chrIX 339331 341664 HC_gene_4384_tx_9 1 + 339331 341664 . 2 1681,585 0,1749 -chrIX 339331 341664 HC_gene_4384_tx_10 1 + 339331 341664 . 2 1211,1020 0,1314 -chrIX 342007 342306 MC_gene_4553_tx_1 1 - 342007 342306 . 1 300 0 -chrIX 342489 342979 HC_gene_4385_tx_1 280 + 342489 342979 . 1 491 0 -chrIX 342641 342979 HC_gene_4385_tx_2 23 + 342641 342979 . 1 339 0 -chrIX 342832 343455 HC_gene_4554_tx_1 2 - 342832 343455 . 1 624 0 -chrIX 342832 343518 HC_gene_4554_tx_2 2 - 342832 343518 . 1 687 0 -chrIX 342832 343683 HC_gene_4554_tx_3 44 - 342832 343683 . 1 852 0 -chrIX 342832 343683 HC_gene_4554_tx_4 1 - 342832 343683 . 2 90,627 0,225 -chrIX 342832 343683 HC_gene_4554_tx_5 1 - 342832 343683 . 2 631,81 0,771 -chrIX 342832 343854 HC_gene_4554_tx_6 3 - 342832 343854 . 1 1023 0 -chrIX 343855 345430 HC_gene_4386_tx_1 1 + 343855 345430 . 1 1576 0 -chrIX 344048 345430 HC_gene_4386_tx_2 7 + 344048 345430 . 1 1383 0 -chrIX 345247 345421 MC_gene_4555_tx_1 1 - 345247 345421 . 1 175 0 -chrIX 345558 347842 HC_gene_4387_tx_1 7 + 345558 347842 . 1 2285 0 -chrIX 345558 347916 HC_gene_4387_tx_2 6 + 345558 347916 . 1 2359 0 -chrIX 345558 347916 HC_gene_4387_tx_3 1 + 345558 347916 . 2 92,1904 0,455 -chrIX 345558 347990 HC_gene_4387_tx_4 6 + 345558 347990 . 1 2433 0 -chrIX 345558 348566 HC_gene_4387_tx_5 1 + 345558 348566 . 1 3009 0 -chrIX 346418 347842 HC_gene_4387_tx_6 1 + 346418 347842 . 1 1425 0 -chrIX 346418 347916 HC_gene_4387_tx_7 2 + 346418 347916 . 1 1499 0 -chrIX 346418 347990 HC_gene_4387_tx_8 1 + 346418 347990 . 2 922,580 0,993 -chrIX 346653 347842 HC_gene_4387_tx_9 1 + 346653 347842 . 1 1190 0 -chrIX 346653 347990 HC_gene_4387_tx_10 1 + 346653 347990 . 1 1338 0 -chrIX 347012 347916 HC_gene_4387_tx_11 4 + 347012 347916 . 1 905 0 -chrIX 347189 347842 HC_gene_4387_tx_12 2 + 347189 347842 . 1 654 0 -chrIX 347189 347916 HC_gene_4387_tx_13 1 + 347189 347916 . 1 728 0 -chrIX 347189 347990 HC_gene_4387_tx_14 4 + 347189 347990 . 1 802 0 -chrIX 347242 347916 HC_gene_4387_tx_15 1 + 347242 347916 . 1 675 0 -chrIX 347242 347990 HC_gene_4387_tx_16 3 + 347242 347990 . 1 749 0 -chrIX 347688 348353 HC_gene_4556_tx_1 3 - 347688 348353 . 1 666 0 -chrIX 347688 348517 HC_gene_4556_tx_2 2 - 347688 348517 . 1 830 0 -chrIX 347788 348353 HC_gene_4556_tx_3 21 - 347788 348353 . 1 566 0 -chrIX 347788 348517 HC_gene_4556_tx_4 2 - 347788 348517 . 1 730 0 -chrIX 347891 348353 HC_gene_4556_tx_5 7 - 347891 348353 . 1 463 0 -chrIX 347891 348517 HC_gene_4556_tx_6 5 - 347891 348517 . 1 627 0 -chrIX 347891 348517 HC_gene_4556_tx_7 1 - 347891 348517 . 2 473,23 0,604 -chrIX 348732 349714 LC_gene_4557_tx_1 1 - 348732 349714 . 1 983 0 -chrIX 349082 350091 HC_gene_4388_tx_1 39 + 349082 350091 . 1 1010 0 -chrIX 349767 350091 HC_gene_4388_tx_2 5 + 349767 350091 . 1 325 0 -chrIX 350272 350607 HC_gene_4389_tx_1 303 + 350272 350607 . 1 336 0 -chrIX 350434 351051 HC_gene_4558_tx_1 13 - 350434 351051 . 1 618 0 -chrIX 350434 352326 HC_gene_4558_tx_2 2 - 350434 352326 . 1 1893 0 -chrIX 350434 353627 HC_gene_4558_tx_3 15 - 350434 353627 . 1 3194 0 -chrIX 350434 353627 HC_gene_4558_tx_4 1 - 350434 353627 . 2 2694,434 0,2760 -chrIX 350434 353627 HC_gene_4558_tx_5 1 - 350434 353627 . 2 2890,137 0,3057 -chrIX 353880 354566 HC_gene_4390_tx_1 1 + 353880 354566 . 1 687 0 -chrIX 353880 355268 HC_gene_4390_tx_2 4 + 353880 355268 . 1 1389 0 -chrIX 353880 355511 HC_gene_4390_tx_3 4 + 353880 355511 . 1 1632 0 -chrIX 353880 355511 HC_gene_4390_tx_4 1 + 353880 355511 . 2 866,717 0,915 -chrIX 353880 355511 HC_gene_4390_tx_5 1 + 353880 355511 . 2 870,606 0,1026 -chrIX 353944 355511 HC_gene_4390_tx_6 1 + 353944 355511 . 1 1568 0 -chrIX 355810 356415 HC_gene_4559_tx_1 12 - 355810 356415 . 1 606 0 -chrIX 355810 356579 HC_gene_4559_tx_3 13 - 355810 356579 . 1 770 0 -chrIX 355810 356740 HC_gene_4559_tx_4 7 - 355810 356740 . 1 931 0 -chrIX 355810 356961 HC_gene_4559_tx_5 36 - 355810 356961 . 1 1152 0 -chrIX 355864 356415 HC_gene_4559_tx_2 1 - 355864 356415 . 1 552 0 -chrIX 355864 356579 HC_gene_4559_tx_6 1 - 355864 356579 . 1 716 0 -chrIX 355864 356961 HC_gene_4559_tx_7 5 - 355864 356961 . 1 1098 0 -chrIX 355962 356579 HC_gene_4559_tx_8 1 - 355962 356579 . 1 618 0 -chrIX 355962 356961 HC_gene_4559_tx_9 1 - 355962 356961 . 1 1000 0 -chrIX 357151 357404 HC_gene_4391_tx_1 18 + 357151 357404 . 1 254 0 -chrIX 357206 358477 HC_gene_4560_tx_1 1 - 357206 358477 . 1 1272 0 -chrIX 357303 358477 HC_gene_4560_tx_2 4 - 357303 358477 . 1 1175 0 -chrIX 357303 359046 HC_gene_4561_tx_1 3 - 357303 359046 . 1 1744 0 -chrIX 357303 360480 HC_gene_4561_tx_2 5 - 357303 360480 . 1 3178 0 -chrIX 360871 362997 HC_gene_4392_tx_1 19 + 360871 362997 . 1 2127 0 -chrIX 360871 362997 HC_gene_4392_tx_2 1 + 360871 362997 . 2 1173,880 0,1247 -chrIX 361260 362997 HC_gene_4392_tx_3 1 + 361260 362997 . 2 1607,82 0,1656 -chrIX 361493 362997 HC_gene_4392_tx_4 2 + 361493 362997 . 1 1505 0 -chrIX 361932 362997 HC_gene_4392_tx_5 1 + 361932 362997 . 1 1066 0 -chrIX 363209 364370 HC_gene_4393_tx_1 19 + 363209 364370 . 1 1162 0 -chrIX 363209 364370 HC_gene_4393_tx_2 1 + 363209 364370 . 2 127,750 0,412 -chrIX 363209 364638 HC_gene_4393_tx_3 30 + 363209 364638 . 1 1430 0 -chrIX 363209 364638 HC_gene_4393_tx_4 1 + 363209 364638 . 2 840,546 0,884 -chrIX 363506 364370 HC_gene_4393_tx_5 1 + 363506 364370 . 1 865 0 -chrIX 363678 364370 HC_gene_4393_tx_6 8 + 363678 364370 . 1 693 0 -chrIX 363678 364638 HC_gene_4393_tx_7 5 + 363678 364638 . 1 961 0 -chrIX 364095 364370 HC_gene_4393_tx_8 3 + 364095 364370 . 1 276 0 -chrIX 364095 364638 HC_gene_4393_tx_9 7 + 364095 364638 . 1 544 0 -chrIX 364843 365412 HC_gene_4394_tx_1 50 + 364843 365412 . 1 570 0 -chrIX 365372 365717 HC_gene_4562_tx_1 33 - 365372 365717 . 1 346 0 -chrIX 365372 366043 HC_gene_4562_tx_2 12 - 365372 366043 . 1 672 0 -chrIX 365372 366793 HC_gene_4562_tx_3 1 - 365372 366793 . 2 1162,201 0,1221 -chrIX 365372 366793 HC_gene_4562_tx_4 4 - 365372 366793 . 2 1167,201 0,1221 -chrIX 365372 366793 HC_gene_4562_tx_5 1 - 365372 366793 . 2 1159,203 0,1219 -chrIX 365372 366793 HC_gene_4562_tx_6 1 - 365372 366793 . 2 1172,201 0,1221 -chrIX 365372 366793 HC_gene_4562_tx_7 1 - 365372 366793 . 2 1190,183 0,1239 -chrIX 365372 366793 HC_gene_4562_tx_8 2 - 365372 366793 . 1 1422 0 -chrIX 365372 368887 HC_gene_4562_tx_9 1 - 365372 368887 . 3 1167,1863,396 0,1221,3120 -chrIX 365372 369588 HC_gene_4562_tx_10 1 - 365372 369588 . 3 1167,1856,1097 0,1221,3120 -chrIX 365372 369943 HC_gene_4562_tx_11 1 - 365372 369943 . 3 1167,3146,112 0,1221,4460 -chrIX 365372 369943 HC_gene_4562_tx_12 1 - 365372 369943 . 2 3080,1452 0,3120 -chrIX 365372 369943 HC_gene_4562_tx_13 1 - 365372 369943 . 2 1167,3351 0,1221 -chrIX 365372 369943 HC_gene_4562_tx_14 1 - 365372 369943 . 2 1080,3351 0,1221 -chrIX 365372 369943 HC_gene_4562_tx_15 1 - 365372 369943 . 4 729,272,1845,1452 0,900,1239,3120 -chrIX 365372 369943 HC_gene_4562_tx_16 1 - 365372 369943 . 3 1167,1863,1452 0,1221,3120 -chrIX 365490 366471 LC_gene_4395_tx_1 1 + 365490 366471 . 1 982 0 -chrIX 370664 371170 LC_gene_4563_tx_1 1 - 370664 371170 . 1 507 0 -chrIX 370677 372847 HC_gene_4396_tx_1 1 + 370677 372847 . 1 2171 0 -chrIX 370677 373107 HC_gene_4396_tx_2 7 + 370677 373107 . 1 2431 0 -chrIX 373006 374366 HC_gene_4564_tx_1 32 - 373006 374366 . 1 1361 0 -chrIX 373006 374366 HC_gene_4564_tx_2 1 - 373006 374366 . 2 398,878 0,483 -chrIX 373006 374366 HC_gene_4564_tx_3 1 - 373006 374366 . 2 554,691 0,670 -chrIX 373141 374366 HC_gene_4564_tx_4 4 - 373141 374366 . 1 1226 0 -chrIX 374472 375309 HC_gene_4397_tx_1 29 + 374472 375309 . 1 838 0 -chrIX 374733 375309 HC_gene_4397_tx_2 4 + 374733 375309 . 1 577 0 -chrIX 375362 377287 MC_gene_4398_tx_1 1 + 375362 377287 . 1 1926 0 -chrIX 375681 377289 MC_gene_4398_tx_2 1 + 375681 377289 . 1 1609 0 -chrIX 376247 377264 MC_gene_4398_tx_3 1 + 376247 377264 . 1 1018 0 -chrIX 377176 378065 HC_gene_4565_tx_1 8 - 377176 378065 . 1 890 0 -chrIX 377176 378262 HC_gene_4565_tx_2 76 - 377176 378262 . 1 1087 0 -chrIX 378461 379881 HC_gene_4399_tx_1 77 + 378461 379881 . 1 1421 0 -chrIX 378461 379881 HC_gene_4399_tx_2 1 + 378461 379881 . 2 611,686 0,735 -chrIX 378461 379881 HC_gene_4399_tx_3 1 + 378461 379881 . 2 830,543 0,878 -chrIX 378849 379881 HC_gene_4399_tx_4 10 + 378849 379881 . 1 1033 0 -chrIX 379129 379881 HC_gene_4399_tx_5 12 + 379129 379881 . 1 753 0 -chrIX 379836 381722 MC_gene_4566_tx_1 1 - 379836 381722 . 1 1887 0 -chrIX 381069 383525 MC_gene_4400_tx_1 1 + 381069 383525 . 1 2457 0 -chrIX 381733 382140 MC_gene_4567_tx_1 1 - 381733 382140 . 1 408 0 -chrIX 381776 383511 MC_gene_4400_tx_2 1 + 381776 383511 . 1 1736 0 -chrIX 381871 383424 MC_gene_4400_tx_3 1 + 381871 383424 . 1 1554 0 -chrIX 381923 383523 MC_gene_4400_tx_4 1 + 381923 383523 . 1 1601 0 -chrIX 382593 383595 MC_gene_4400_tx_5 1 + 382593 383595 . 1 1003 0 -chrIX 382798 383511 MC_gene_4400_tx_6 1 + 382798 383511 . 2 313,333 0,381 -chrIX 383007 383525 MC_gene_4400_tx_7 1 + 383007 383525 . 1 519 0 -chrIX 383164 383524 MC_gene_4400_tx_8 1 + 383164 383524 . 1 361 0 -chrIX 383360 383655 HC_gene_4568_tx_1 12 - 383360 383655 . 1 296 0 -chrIX 383360 383879 HC_gene_4568_tx_2 9 - 383360 383879 . 1 520 0 -chrIX 383360 384101 HC_gene_4568_tx_3 48 - 383360 384101 . 1 742 0 -chrIX 384229 385817 HC_gene_4401_tx_1 1 + 384229 385817 . 1 1589 0 -chrIX 384641 385817 HC_gene_4401_tx_2 39 + 384641 385817 . 1 1177 0 -chrIX 384641 385817 HC_gene_4401_tx_3 1 + 384641 385817 . 2 978,146 0,1031 -chrIX 384734 385817 HC_gene_4401_tx_4 2 + 384734 385817 . 1 1084 0 -chrIX 384822 385817 HC_gene_4401_tx_5 8 + 384822 385817 . 1 996 0 -chrIX 385686 386197 HC_gene_4569_tx_1 2 - 385686 386197 . 1 512 0 -chrIX 385686 386344 HC_gene_4569_tx_2 9 - 385686 386344 . 1 659 0 -chrIX 385686 386450 HC_gene_4569_tx_3 21 - 385686 386450 . 1 765 0 -chrIX 385686 386626 HC_gene_4569_tx_4 1 - 385686 386626 . 1 941 0 -chrIX 387036 388459 HC_gene_4402_tx_1 4 + 387036 388459 . 1 1424 0 -chrIX 387179 388459 HC_gene_4402_tx_2 1 + 387179 388459 . 1 1281 0 -chrIX 389417 390431 LC_gene_4403_tx_1 1 + 389417 390431 . 1 1015 0 -chrIX 393650 395944 MC_gene_4570_tx_1 1 - 393650 395944 . 2 1182,139 0,2156 -chrIX 393887 395671 MC_gene_4570_tx_2 1 - 393887 395671 . 2 574,63 0,1722 -chrIX 395824 397106 MC_gene_4571_tx_1 1 - 395824 397106 . 2 602,361 0,922 -chrIX 397257 398447 HC_gene_4404_tx_1 40 + 397257 398447 . 1 1191 0 -chrIX 398702 399358 HC_gene_4405_tx_1 231 + 398702 399358 . 1 657 0 -chrIX 398887 399358 HC_gene_4405_tx_2 4 + 398887 399358 . 1 472 0 -chrIX 398953 399358 HC_gene_4405_tx_3 23 + 398953 399358 . 1 406 0 -chrIX 399220 399542 MC_gene_4572_tx_1 1 - 399220 399542 . 1 323 0 -chrIX 399693 401951 LC_gene_4573_tx_1 1 - 399693 401951 . 1 2259 0 -chrIX 399758 402760 HC_gene_4406_tx_1 10 + 399758 402760 . 1 3003 0 -chrIX 399978 402760 HC_gene_4406_tx_2 1 + 399978 402760 . 2 346,2266 0,517 -chrIX 399978 402760 HC_gene_4406_tx_3 3 + 399978 402760 . 1 2783 0 -chrIX 402114 402760 HC_gene_4406_tx_4 11 + 402114 402760 . 1 647 0 -chrIX 402650 403229 HC_gene_4574_tx_1 1 - 402650 403229 . 1 580 0 -chrIX 402650 403315 HC_gene_4574_tx_2 3 - 402650 403315 . 1 666 0 -chrIX 402650 403500 HC_gene_4574_tx_3 9 - 402650 403500 . 1 851 0 -chrIX 402747 403229 HC_gene_4574_tx_4 3 - 402747 403229 . 1 483 0 -chrIX 402747 403315 HC_gene_4574_tx_5 6 - 402747 403315 . 1 569 0 -chrIX 402747 403427 HC_gene_4574_tx_6 1 - 402747 403427 . 1 681 0 -chrIX 402747 403500 HC_gene_4574_tx_7 1 - 402747 403500 . 2 271,261 0,493 -chrIX 402747 403500 HC_gene_4574_tx_8 22 - 402747 403500 . 1 754 0 -chrIX 402747 403500 HC_gene_4574_tx_9 1 - 402747 403500 . 2 276,393 0,361 -chrIX 403641 404893 HC_gene_4407_tx_1 9 + 403641 404893 . 1 1253 0 -chrIX 403641 404893 HC_gene_4407_tx_2 1 + 403641 404893 . 2 792,382 0,871 -chrIX 404392 404893 HC_gene_4407_tx_3 4 + 404392 404893 . 1 502 0 -chrIX 404779 406008 HC_gene_4575_tx_1 54 - 404779 406008 . 1 1230 0 -chrIX 404779 406008 HC_gene_4575_tx_2 1 - 404779 406008 . 2 391,765 0,465 -chrIX 404779 406008 HC_gene_4575_tx_3 1 - 404779 406008 . 2 593,439 0,791 -chrIX 404779 406008 HC_gene_4575_tx_4 1 - 404779 406008 . 2 628,434 0,796 -chrIX 405005 406281 MC_gene_4408_tx_1 1 + 405005 406281 . 1 1277 0 -chrIX 406105 407967 HC_gene_4576_tx_1 1 - 406105 407967 . 2 1000,224 0,1639 -chrIX 406105 407967 HC_gene_4576_tx_2 3 - 406105 407967 . 1 1863 0 -chrIX 406105 407967 HC_gene_4576_tx_3 1 - 406105 407967 . 2 1010,368 0,1495 -chrIX 407614 407967 HC_gene_4576_tx_4 8 - 407614 407967 . 1 354 0 -chrIX 408365 410463 MC_gene_4577_tx_1 1 - 408365 410463 . 1 2099 0 -chrIX 410021 410498 HC_gene_4409_tx_1 11 + 410021 410498 . 1 478 0 -chrIX 410199 410731 MC_gene_4578_tx_1 1 - 410199 410731 . 1 533 0 -chrIX 410427 411119 MC_gene_4579_tx_1 1 - 410427 411119 . 1 693 0 -chrIX 410699 411784 HC_gene_4410_tx_1 3 + 410699 411784 . 1 1086 0 -chrIX 410871 411784 HC_gene_4410_tx_2 2 + 410871 411784 . 1 914 0 -chrIX 411301 411784 HC_gene_4410_tx_3 3 + 411301 411784 . 1 484 0 -chrIX 411980 412811 HC_gene_4580_tx_1 22 - 411980 412811 . 1 832 0 -chrIX 412263 413058 MC_gene_4411_tx_1 1 + 412263 413058 . 1 796 0 -chrIX 412960 414786 HC_gene_4581_tx_1 12 - 412960 414786 . 1 1827 0 -chrIX 414903 415466 HC_gene_4582_tx_1 5 - 414903 415466 . 1 564 0 -chrIX 414903 415676 HC_gene_4582_tx_2 22 - 414903 415676 . 1 774 0 -chrIX 415069 415315 LC_gene_4412_tx_1 1 + 415069 415315 . 1 247 0 -chrIX 416070 419528 HC_gene_4413_tx_1 6 + 416070 419528 . 1 3459 0 -chrIX 417892 419528 HC_gene_4413_tx_2 2 + 417892 419528 . 1 1637 0 -chrIX 418861 419528 HC_gene_4413_tx_3 7 + 418861 419528 . 1 668 0 -chrIX 419450 420034 HC_gene_4583_tx_1 4 - 419450 420034 . 1 585 0 -chrIX 419450 420583 HC_gene_4583_tx_3 1 - 419450 420583 . 1 1134 0 -chrIX 419450 420772 HC_gene_4583_tx_4 25 - 419450 420772 . 1 1323 0 -chrIX 419542 420034 HC_gene_4583_tx_2 63 - 419542 420034 . 1 493 0 -chrIX 419542 420583 HC_gene_4583_tx_5 54 - 419542 420583 . 1 1042 0 -chrIX 419542 420583 HC_gene_4583_tx_6 1 - 419542 420583 . 2 537,155 0,887 -chrIX 419542 420583 HC_gene_4583_tx_7 1 - 419542 420583 . 2 357,592 0,450 -chrIX 419542 420583 HC_gene_4583_tx_8 1 - 419542 420583 . 2 374,480 0,562 -chrIX 419542 420772 HC_gene_4583_tx_9 327 - 419542 420772 . 1 1231 0 -chrIX 419542 420772 HC_gene_4583_tx_10 1 - 419542 420772 . 2 501,485 0,746 -chrIX 419542 420772 HC_gene_4583_tx_11 1 - 419542 420772 . 2 347,789 0,442 -chrIX 419542 420772 HC_gene_4583_tx_12 1 - 419542 420772 . 2 699,475 0,756 -chrIX 419542 420772 HC_gene_4583_tx_13 1 - 419542 420772 . 2 323,78 0,1153 -chrIX 419542 420772 HC_gene_4583_tx_14 1 - 419542 420772 . 2 688,485 0,746 -chrIX 419542 420772 HC_gene_4583_tx_15 1 - 419542 420772 . 2 768,382 0,849 -chrIX 419542 421814 HC_gene_4584_tx_1 1 - 419542 421814 . 1 2273 0 -chrIX 419542 422892 HC_gene_4584_tx_2 1 - 419542 422892 . 1 3351 0 -chrIX 419774 420329 MC_gene_4414_tx_1 1 + 419774 420329 . 1 556 0 -chrIX 420959 421567 HC_gene_4584_tx_3 14 - 420959 421567 . 1 609 0 -chrIX 420959 421640 HC_gene_4584_tx_4 4 - 420959 421640 . 1 682 0 -chrIX 420959 421814 HC_gene_4584_tx_5 80 - 420959 421814 . 1 856 0 -chrIX 420959 421814 HC_gene_4584_tx_6 1 - 420959 421814 . 2 112,619 0,237 -chrIX 420959 422892 HC_gene_4584_tx_7 2 - 420959 422892 . 1 1934 0 -chrIX 421027 421918 HC_gene_4415_tx_1 31 + 421027 421918 . 1 892 0 -chrIX 421830 422892 HC_gene_4584_tx_8 1 - 421830 422892 . 1 1063 0 -chrIX 421831 422892 HC_gene_4584_tx_9 1 - 421831 422892 . 1 1062 0 -chrIX 421842 422892 HC_gene_4584_tx_10 1 - 421842 422892 . 1 1051 0 -chrIX 421849 422892 HC_gene_4584_tx_11 1 - 421849 422892 . 1 1044 0 -chrIX 422005 422622 HC_gene_4584_tx_13 9 - 422005 422622 . 1 618 0 -chrIX 422005 422892 HC_gene_4584_tx_12 60 - 422005 422892 . 1 888 0 -chrIX 423063 423768 HC_gene_4416_tx_1 445 + 423063 423768 . 1 706 0 -chrIX 423198 423768 HC_gene_4416_tx_2 22 + 423198 423768 . 1 571 0 -chrIX 423294 423768 HC_gene_4416_tx_3 49 + 423294 423768 . 1 475 0 -chrIX 423389 423768 HC_gene_4416_tx_4 29 + 423389 423768 . 1 380 0 -chrIX 423686 424129 HC_gene_4585_tx_1 10 - 423686 424129 . 1 444 0 -chrIX 423686 424544 HC_gene_4585_tx_2 123 - 423686 424544 . 1 859 0 -chrIX 424727 425074 MC_gene_4417_tx_1 1 + 424727 425074 . 1 348 0 -chrIX 425305 425706 MC_gene_4418_tx_1 1 + 425305 425706 . 1 402 0 -chrIX 425830 426301 MC_gene_4419_tx_1 1 + 425830 426301 . 1 472 0 -chrIX 427325 429166 MC_gene_4586_tx_1 1 - 427325 429166 . 1 1842 0 -chrIX 429685 430442 HC_gene_4420_tx_1 1 + 429685 430442 . 1 758 0 -chrIX 430398 432115 HC_gene_4587_tx_1 1 - 430398 432115 . 1 1718 0 -chrIX 430398 432242 HC_gene_4587_tx_2 3 - 430398 432242 . 1 1845 0 -chrIX 431242 433360 LC_gene_4421_tx_1 1 + 431242 433360 . 1 2119 0 -chrM 6546 6963 MC_gene_9530_tx_1 1 + 6546 6963 . 1 418 0 -chrM 13987 14544 MC_gene_9531_tx_1 1 + 13987 14544 . 1 558 0 -chrM 32232 32550 MC_gene_9532_tx_1 1 + 32232 32550 . 1 319 0 -chrM 59349 59647 MC_gene_9533_tx_1 1 + 59349 59647 . 1 299 0 -chrM 60146 62146 MC_gene_9534_tx_1 1 + 60146 62146 . 2 564,275 0,1726 -chrM 60524 62331 MC_gene_9535_tx_1 1 + 60524 62331 . 2 186,460 0,1348 -chrV 197 5942 LC_gene_2489_tx_1 1 - 197 5942 . 1 5746 0 -chrV 4034 6451 MC_gene_2241_tx_1 1 + 4034 6451 . 1 2418 0 -chrV 6503 7555 HC_gene_2490_tx_1 8 - 6503 7555 . 1 1053 0 -chrV 7832 8122 HC_gene_2242_tx_1 12 + 7832 8122 . 1 291 0 -chrV 8432 9772 HC_gene_2491_tx_1 6 - 8432 9772 . 1 1341 0 -chrV 8432 9772 HC_gene_2491_tx_2 1 - 8432 9772 . 2 558,583 0,758 -chrV 9439 9772 HC_gene_2491_tx_3 2 - 9439 9772 . 1 334 0 -chrV 9498 9772 HC_gene_2491_tx_4 7 - 9498 9772 . 1 275 0 -chrV 9552 9772 HC_gene_2491_tx_5 1 - 9552 9772 . 1 221 0 -chrV 9960 10639 MC_gene_2243_tx_1 1 + 9960 10639 . 1 680 0 -chrV 10292 11314 HC_gene_2492_tx_1 1 - 10292 11314 . 1 1023 0 -chrV 10550 11314 HC_gene_2492_tx_2 1 - 10550 11314 . 1 765 0 -chrV 11349 11988 MC_gene_2244_tx_1 1 + 11349 11988 . 1 640 0 -chrV 11492 11903 MC_gene_2244_tx_2 1 + 11492 11903 . 1 412 0 -chrV 12447 13353 MC_gene_2493_tx_1 1 - 12447 13353 . 1 907 0 -chrV 13639 14674 HC_gene_2245_tx_1 8 + 13639 14674 . 1 1036 0 -chrV 13639 14674 HC_gene_2245_tx_2 1 + 13639 14674 . 3 53,774,98 0,112,938 -chrV 13639 14757 HC_gene_2245_tx_3 13 + 13639 14757 . 1 1119 0 -chrV 14539 15070 HC_gene_2494_tx_1 3 - 14539 15070 . 1 532 0 -chrV 15308 15896 MC_gene_2495_tx_1 1 - 15308 15896 . 1 589 0 -chrV 15714 15952 MC_gene_2496_tx_1 1 - 15714 15952 . 1 239 0 -chrV 16167 17984 HC_gene_2246_tx_1 5 + 16167 17984 . 1 1818 0 -chrV 16218 17984 HC_gene_2246_tx_2 3 + 16218 17984 . 1 1767 0 -chrV 16341 17984 HC_gene_2246_tx_3 223 + 16341 17984 . 1 1644 0 -chrV 16341 17984 HC_gene_2246_tx_4 1 + 16341 17984 . 2 1101,460 0,1184 -chrV 16341 17984 HC_gene_2246_tx_5 1 + 16341 17984 . 2 353,1016 0,628 -chrV 16341 17984 HC_gene_2246_tx_6 1 + 16341 17984 . 2 60,1546 0,98 -chrV 16341 17984 HC_gene_2246_tx_7 1 + 16341 17984 . 2 641,854 0,790 -chrV 16341 17984 HC_gene_2246_tx_8 1 + 16341 17984 . 2 505,909 0,735 -chrV 16649 17984 HC_gene_2246_tx_9 15 + 16649 17984 . 1 1336 0 -chrV 16801 17984 HC_gene_2246_tx_10 20 + 16801 17984 . 1 1184 0 -chrV 16886 17984 HC_gene_2246_tx_11 48 + 16886 17984 . 1 1099 0 -chrV 16912 17984 HC_gene_2246_tx_12 1 + 16912 17984 . 2 340,673 0,400 -chrV 17036 17984 HC_gene_2246_tx_13 36 + 17036 17984 . 1 949 0 -chrV 17237 17984 HC_gene_2246_tx_14 75 + 17237 17984 . 1 748 0 -chrV 17308 17984 HC_gene_2246_tx_15 46 + 17308 17984 . 1 677 0 -chrV 17372 17984 HC_gene_2246_tx_16 29 + 17372 17984 . 1 613 0 -chrV 19516 21225 MC_gene_2247_tx_1 1 + 19516 21225 . 1 1710 0 -chrV 21472 23270 LC_gene_2497_tx_1 1 - 21472 23270 . 1 1799 0 -chrV 21535 25479 MC_gene_2248_tx_1 1 + 21535 25479 . 1 3945 0 -chrV 25395 25839 HC_gene_2498_tx_1 8 - 25395 25839 . 1 445 0 -chrV 25395 25990 HC_gene_2498_tx_2 75 - 25395 25990 . 1 596 0 -chrV 25395 26490 HC_gene_2498_tx_3 6 - 25395 26490 . 1 1096 0 -chrV 26127 27291 HC_gene_2249_tx_1 3 + 26127 27291 . 1 1165 0 -chrV 26202 27291 HC_gene_2249_tx_2 1 + 26202 27291 . 1 1090 0 -chrV 26680 27291 HC_gene_2249_tx_3 60 + 26680 27291 . 1 612 0 -chrV 26680 27526 HC_gene_2249_tx_4 1 + 26680 27526 . 1 847 0 -chrV 27637 29622 HC_gene_2250_tx_1 26 + 27637 29622 . 1 1986 0 -chrV 27706 29622 HC_gene_2250_tx_2 1 + 27706 29622 . 1 1917 0 -chrV 29467 31269 HC_gene_2499_tx_1 4 - 29467 31269 . 1 1803 0 -chrV 29540 31269 HC_gene_2499_tx_2 1 - 29540 31269 . 1 1730 0 -chrV 29605 31269 HC_gene_2499_tx_3 1 - 29605 31269 . 1 1665 0 -chrV 31375 31686 HC_gene_2500_tx_1 12 - 31375 31686 . 1 312 0 -chrV 31375 31978 HC_gene_2500_tx_2 24 - 31375 31978 . 1 604 0 -chrV 31375 32623 HC_gene_2500_tx_3 12 - 31375 32623 . 1 1249 0 -chrV 31375 33513 HC_gene_2500_tx_4 1 - 31375 33513 . 2 1602,296 0,1843 -chrV 31375 33513 HC_gene_2500_tx_5 14 - 31375 33513 . 1 2139 0 -chrV 31375 33682 HC_gene_2500_tx_6 33 - 31375 33682 . 1 2308 0 -chrV 31375 33682 HC_gene_2500_tx_7 1 - 31375 33682 . 2 1419,322 0,1986 -chrV 31375 33682 HC_gene_2500_tx_8 1 - 31375 33682 . 2 1016,1221 0,1087 -chrV 31375 33682 HC_gene_2500_tx_9 1 - 31375 33682 . 2 702,1208 0,1100 -chrV 31375 33682 HC_gene_2500_tx_10 1 - 31375 33682 . 2 1646,450 0,1858 -chrV 31375 33682 HC_gene_2500_tx_11 1 - 31375 33682 . 2 1580,573 0,1735 -chrV 31375 33682 HC_gene_2500_tx_12 1 - 31375 33682 . 2 1076,1157 0,1151 -chrV 31375 34253 HC_gene_2500_tx_13 1 - 31375 34253 . 1 2879 0 -chrV 33516 34253 HC_gene_2500_tx_14 2 - 33516 34253 . 1 738 0 -chrV 33938 34253 HC_gene_2500_tx_15 1 - 33938 34253 . 1 316 0 -chrV 33938 34423 HC_gene_2500_tx_16 1 - 33938 34423 . 1 486 0 -chrV 34233 36394 HC_gene_2251_tx_1 1 + 34233 36394 . 1 2162 0 -chrV 34233 36568 HC_gene_2251_tx_2 1 + 34233 36568 . 1 2336 0 -chrV 34393 36394 HC_gene_2251_tx_3 5 + 34393 36394 . 1 2002 0 -chrV 34561 36394 HC_gene_2251_tx_4 2 + 34561 36394 . 1 1834 0 -chrV 36275 39661 HC_gene_2501_tx_1 6 - 36275 39661 . 1 3387 0 -chrV 36275 39661 HC_gene_2501_tx_2 1 - 36275 39661 . 2 1915,1367 0,2020 -chrV 36329 39661 HC_gene_2501_tx_3 1 - 36329 39661 . 1 3333 0 -chrV 39817 40020 HC_gene_2502_tx_1 1 - 39817 40020 . 1 204 0 -chrV 39817 40235 HC_gene_2502_tx_2 36 - 39817 40235 . 1 419 0 -chrV 39817 40867 HC_gene_2502_tx_3 15 - 39817 40867 . 1 1051 0 -chrV 39817 40929 HC_gene_2502_tx_4 31 - 39817 40929 . 1 1113 0 -chrV 39817 40929 HC_gene_2502_tx_5 1 - 39817 40929 . 2 690,168 0,945 -chrV 39817 41082 HC_gene_2502_tx_6 14 - 39817 41082 . 1 1266 0 -chrV 39817 41299 HC_gene_2502_tx_7 27 - 39817 41299 . 1 1483 0 -chrV 39817 41299 HC_gene_2502_tx_8 1 - 39817 41299 . 2 565,857 0,626 -chrV 39817 41434 HC_gene_2502_tx_9 5 - 39817 41434 . 1 1618 0 -chrV 39817 41554 HC_gene_2502_tx_10 11 - 39817 41554 . 1 1738 0 -chrV 39817 41660 HC_gene_2502_tx_11 21 - 39817 41660 . 1 1844 0 -chrV 39817 42009 HC_gene_2502_tx_12 81 - 39817 42009 . 1 2193 0 -chrV 39817 42009 HC_gene_2502_tx_13 1 - 39817 42009 . 2 1637,321 0,1872 -chrV 39817 42009 HC_gene_2502_tx_14 1 - 39817 42009 . 2 241,1899 0,294 -chrV 39817 42119 HC_gene_2502_tx_15 1 - 39817 42119 . 1 2303 0 -chrV 39869 40472 MC_gene_2252_tx_1 1 + 39869 40472 . 1 604 0 -chrV 41036 42175 MC_gene_2253_tx_1 1 + 41036 42175 . 1 1140 0 -chrV 42333 42702 HC_gene_2503_tx_1 103 - 42333 42702 . 1 370 0 -chrV 42333 43070 HC_gene_2503_tx_2 20 - 42333 43070 . 1 738 0 -chrV 42450 45001 HC_gene_2254_tx_1 1 + 42450 45001 . 1 2552 0 -chrV 43220 45001 HC_gene_2254_tx_2 96 + 43220 45001 . 1 1782 0 -chrV 43220 45001 HC_gene_2254_tx_3 1 + 43220 45001 . 2 949,667 0,1115 -chrV 43220 45001 HC_gene_2254_tx_4 1 + 43220 45001 . 2 1071,650 0,1132 -chrV 43220 45001 HC_gene_2254_tx_5 1 + 43220 45001 . 2 927,755 0,1027 -chrV 43220 45001 HC_gene_2254_tx_6 1 + 43220 45001 . 2 949,783 0,999 -chrV 43220 45001 HC_gene_2254_tx_7 1 + 43220 45001 . 2 927,763 0,1019 -chrV 43220 45001 HC_gene_2254_tx_8 1 + 43220 45001 . 2 537,906 0,876 -chrV 43220 45001 HC_gene_2254_tx_9 1 + 43220 45001 . 2 990,693 0,1089 -chrV 43220 45001 HC_gene_2254_tx_10 1 + 43220 45001 . 2 1149,593 0,1189 -chrV 43220 45001 HC_gene_2254_tx_11 1 + 43220 45001 . 2 898,816 0,966 -chrV 43498 45001 HC_gene_2254_tx_12 10 + 43498 45001 . 1 1504 0 -chrV 44579 45001 HC_gene_2254_tx_13 15 + 44579 45001 . 1 423 0 -chrV 44651 45001 HC_gene_2254_tx_14 22 + 44651 45001 . 1 351 0 -chrV 44909 45695 HC_gene_2504_tx_1 5 - 44909 45695 . 1 787 0 -chrV 44909 45799 HC_gene_2504_tx_2 3 - 44909 45799 . 1 891 0 -chrV 44909 45928 HC_gene_2504_tx_3 2 - 44909 45928 . 1 1020 0 -chrV 45179 45817 HC_gene_2255_tx_1 1 + 45179 45817 . 1 639 0 -chrV 46187 46891 HC_gene_2505_tx_1 2 - 46187 46891 . 1 705 0 -chrV 47123 48504 HC_gene_2256_tx_1 31 + 47123 48504 . 1 1382 0 -chrV 47123 48504 HC_gene_2256_tx_2 1 + 47123 48504 . 2 244,831 0,551 -chrV 47123 48504 HC_gene_2256_tx_3 1 + 47123 48504 . 2 260,232 0,1150 -chrV 47123 49882 HC_gene_2256_tx_4 1 + 47123 49882 . 2 1411,1285 0,1475 -chrV 47747 48504 HC_gene_2256_tx_5 8 + 47747 48504 . 1 758 0 -chrV 48303 49450 HC_gene_2506_tx_1 6 - 48303 49450 . 1 1148 0 -chrV 48303 49562 HC_gene_2506_tx_2 15 - 48303 49562 . 1 1260 0 -chrV 48303 49675 HC_gene_2506_tx_3 9 - 48303 49675 . 1 1373 0 -chrV 48303 49820 HC_gene_2506_tx_4 12 - 48303 49820 . 1 1518 0 -chrV 48303 51595 HC_gene_2506_tx_5 25 - 48303 51595 . 1 3293 0 -chrV 48303 51595 HC_gene_2506_tx_6 1 - 48303 51595 . 2 377,2839 0,454 -chrV 48303 51595 HC_gene_2506_tx_7 1 - 48303 51595 . 2 2659,417 0,2876 -chrV 48303 51595 HC_gene_2506_tx_8 1 - 48303 51595 . 2 2109,1130 0,2163 -chrV 51843 52126 MC_gene_2257_tx_1 1 + 51843 52126 . 1 284 0 -chrV 51979 53246 HC_gene_2507_tx_1 1 - 51979 53246 . 1 1268 0 -chrV 52171 53160 HC_gene_2507_tx_2 2 - 52171 53160 . 1 990 0 -chrV 52171 53246 HC_gene_2507_tx_3 2 - 52171 53246 . 1 1076 0 -chrV 52482 53160 HC_gene_2507_tx_4 69 - 52482 53160 . 1 679 0 -chrV 52482 53160 HC_gene_2507_tx_5 1 - 52482 53160 . 2 351,168 0,511 -chrV 52482 53246 HC_gene_2507_tx_6 1133 - 52482 53246 . 1 765 0 -chrV 52482 53246 HC_gene_2507_tx_7 1 - 52482 53246 . 3 277,294,86 0,337,679 -chrV 52482 53246 HC_gene_2507_tx_8 1 - 52482 53246 . 2 489,201 0,564 -chrV 52589 53246 HC_gene_2507_tx_9 1 - 52589 53246 . 1 658 0 -chrV 52591 53246 HC_gene_2507_tx_10 2 - 52591 53246 . 1 656 0 -chrV 52593 53246 HC_gene_2507_tx_11 2 - 52593 53246 . 1 654 0 -chrV 52594 53246 HC_gene_2507_tx_12 1 - 52594 53246 . 1 653 0 -chrV 52595 53246 HC_gene_2507_tx_13 3 - 52595 53246 . 1 652 0 -chrV 52597 53246 HC_gene_2507_tx_14 2 - 52597 53246 . 1 650 0 -chrV 52598 53246 HC_gene_2507_tx_15 2 - 52598 53246 . 1 649 0 -chrV 52599 53246 HC_gene_2507_tx_16 2 - 52599 53246 . 1 648 0 -chrV 52603 53246 HC_gene_2507_tx_17 1 - 52603 53246 . 1 644 0 -chrV 52606 53246 HC_gene_2507_tx_18 1 - 52606 53246 . 1 641 0 -chrV 52607 53246 HC_gene_2507_tx_19 3 - 52607 53246 . 1 640 0 -chrV 52608 53246 HC_gene_2507_tx_20 2 - 52608 53246 . 1 639 0 -chrV 52609 53246 HC_gene_2507_tx_21 4 - 52609 53246 . 1 638 0 -chrV 52610 53246 HC_gene_2507_tx_22 1 - 52610 53246 . 1 637 0 -chrV 52613 53246 HC_gene_2507_tx_23 5 - 52613 53246 . 1 634 0 -chrV 52614 53246 HC_gene_2507_tx_24 4 - 52614 53246 . 1 633 0 -chrV 52615 53246 HC_gene_2507_tx_25 1 - 52615 53246 . 1 632 0 -chrV 52619 53246 HC_gene_2507_tx_26 9 - 52619 53246 . 1 628 0 -chrV 52620 53160 HC_gene_2507_tx_27 1 - 52620 53160 . 1 541 0 -chrV 52620 53246 HC_gene_2507_tx_28 5 - 52620 53246 . 1 627 0 -chrV 52621 53246 HC_gene_2507_tx_29 2 - 52621 53246 . 1 626 0 -chrV 52622 53246 HC_gene_2507_tx_30 2 - 52622 53246 . 1 625 0 -chrV 52623 53246 HC_gene_2507_tx_31 10 - 52623 53246 . 1 624 0 -chrV 52625 53246 HC_gene_2507_tx_32 1 - 52625 53246 . 1 622 0 -chrV 52627 53160 HC_gene_2507_tx_33 1 - 52627 53160 . 1 534 0 -chrV 52627 53246 HC_gene_2507_tx_34 11 - 52627 53246 . 1 620 0 -chrV 52628 53160 HC_gene_2507_tx_35 2 - 52628 53160 . 1 533 0 -chrV 52628 53246 HC_gene_2507_tx_36 18 - 52628 53246 . 1 619 0 -chrV 52629 53160 HC_gene_2507_tx_37 1 - 52629 53160 . 1 532 0 -chrV 52629 53246 HC_gene_2507_tx_38 22 - 52629 53246 . 1 618 0 -chrV 52630 53160 HC_gene_2507_tx_39 2 - 52630 53160 . 1 531 0 -chrV 52630 53246 HC_gene_2507_tx_40 7 - 52630 53246 . 1 617 0 -chrV 52631 53160 HC_gene_2507_tx_41 2 - 52631 53160 . 1 530 0 -chrV 52631 53246 HC_gene_2507_tx_42 38 - 52631 53246 . 1 616 0 -chrV 52632 53246 HC_gene_2507_tx_43 6 - 52632 53246 . 1 615 0 -chrV 52633 53160 HC_gene_2507_tx_44 3 - 52633 53160 . 1 528 0 -chrV 52633 53246 HC_gene_2507_tx_45 28 - 52633 53246 . 1 614 0 -chrV 52634 53246 HC_gene_2507_tx_46 16 - 52634 53246 . 1 613 0 -chrV 52635 53246 HC_gene_2507_tx_47 3 - 52635 53246 . 1 612 0 -chrV 52636 53246 HC_gene_2507_tx_48 9 - 52636 53246 . 1 611 0 -chrV 52637 53246 HC_gene_2507_tx_49 10 - 52637 53246 . 1 610 0 -chrV 52638 53160 HC_gene_2507_tx_50 1 - 52638 53160 . 1 523 0 -chrV 52638 53246 HC_gene_2507_tx_51 41 - 52638 53246 . 1 609 0 -chrV 52639 53160 HC_gene_2507_tx_52 2 - 52639 53160 . 1 522 0 -chrV 52639 53246 HC_gene_2507_tx_53 66 - 52639 53246 . 1 608 0 -chrV 52640 53246 HC_gene_2507_tx_54 11 - 52640 53246 . 1 607 0 -chrV 52641 53246 HC_gene_2507_tx_55 15 - 52641 53246 . 1 606 0 -chrV 52642 53246 HC_gene_2507_tx_56 3 - 52642 53246 . 1 605 0 -chrV 52643 53246 HC_gene_2507_tx_57 1 - 52643 53246 . 1 604 0 -chrV 52644 53160 HC_gene_2507_tx_58 1 - 52644 53160 . 1 517 0 -chrV 52644 53246 HC_gene_2507_tx_59 15 - 52644 53246 . 1 603 0 -chrV 52645 53160 HC_gene_2507_tx_60 2 - 52645 53160 . 1 516 0 -chrV 52645 53246 HC_gene_2507_tx_61 7 - 52645 53246 . 1 602 0 -chrV 52653 53432 LC_gene_2258_tx_1 1 + 52653 53432 . 1 780 0 -chrV 53726 53930 MC_gene_2259_tx_1 1 + 53726 53930 . 1 205 0 -chrV 53790 55830 HC_gene_2508_tx_1 3 - 53790 55830 . 1 2041 0 -chrV 53790 56171 HC_gene_2508_tx_2 19 - 53790 56171 . 1 2382 0 -chrV 53790 56171 HC_gene_2508_tx_3 1 - 53790 56171 . 2 797,1472 0,910 -chrV 56346 58171 HC_gene_2260_tx_1 1 + 56346 58171 . 2 1021,770 0,1056 -chrV 56346 58171 HC_gene_2260_tx_2 3 + 56346 58171 . 1 1826 0 -chrV 56535 58171 HC_gene_2260_tx_3 40 + 56535 58171 . 1 1637 0 -chrV 56535 58171 HC_gene_2260_tx_4 1 + 56535 58171 . 2 530,901 0,736 -chrV 56535 58171 HC_gene_2260_tx_5 1 + 56535 58171 . 2 1144,268 0,1369 -chrV 56760 58171 HC_gene_2260_tx_6 8 + 56760 58171 . 1 1412 0 -chrV 56932 58171 HC_gene_2260_tx_7 5 + 56932 58171 . 1 1240 0 -chrV 57233 58171 HC_gene_2260_tx_8 10 + 57233 58171 . 1 939 0 -chrV 57608 58171 HC_gene_2260_tx_9 14 + 57608 58171 . 1 564 0 -chrV 57822 58171 HC_gene_2260_tx_10 11 + 57822 58171 . 1 350 0 -chrV 58327 59309 HC_gene_2261_tx_1 423 + 58327 59309 . 1 983 0 -chrV 58550 59309 HC_gene_2261_tx_2 45 + 58550 59309 . 1 760 0 -chrV 58687 59309 HC_gene_2261_tx_3 27 + 58687 59309 . 1 623 0 -chrV 58802 59309 HC_gene_2261_tx_4 68 + 58802 59309 . 1 508 0 -chrV 58830 59282 MC_gene_2509_tx_1 1 - 58830 59282 . 1 453 0 -chrV 58884 59309 HC_gene_2261_tx_5 113 + 58884 59309 . 1 426 0 -chrV 59512 59749 HC_gene_2510_tx_1 14 - 59512 59749 . 1 238 0 -chrV 59512 60185 HC_gene_2510_tx_2 11 - 59512 60185 . 1 674 0 -chrV 59512 60903 HC_gene_2510_tx_4 55 - 59512 60903 . 1 1392 0 -chrV 59512 60903 HC_gene_2510_tx_5 1 - 59512 60903 . 2 132,1195 0,197 -chrV 59623 60185 HC_gene_2510_tx_3 1 - 59623 60185 . 1 563 0 -chrV 59623 60903 HC_gene_2510_tx_6 16 - 59623 60903 . 1 1281 0 -chrV 59623 60903 HC_gene_2510_tx_7 1 - 59623 60903 . 2 800,337 0,944 -chrV 61056 61761 LC_gene_2511_tx_1 1 - 61056 61761 . 1 706 0 -chrV 61189 61686 HC_gene_2262_tx_1 15 + 61189 61686 . 1 498 0 -chrV 62138 62484 LC_gene_2512_tx_1 1 - 62138 62484 . 1 347 0 -chrV 62790 65189 HC_gene_2513_tx_1 2 - 62790 65189 . 1 2400 0 -chrV 62882 65189 HC_gene_2513_tx_2 1 - 62882 65189 . 1 2308 0 -chrV 63381 64223 LC_gene_2263_tx_1 1 + 63381 64223 . 1 843 0 -chrV 64137 65189 HC_gene_2513_tx_3 39 - 64137 65189 . 1 1053 0 -chrV 64872 65324 LC_gene_2264_tx_1 1 + 64872 65324 . 1 453 0 -chrV 65309 65972 HC_gene_2514_tx_1 24 - 65309 65972 . 1 664 0 -chrV 65309 66202 HC_gene_2514_tx_2 20 - 65309 66202 . 1 894 0 -chrV 65309 66677 HC_gene_2514_tx_3 14 - 65309 66677 . 1 1369 0 -chrV 65309 66677 HC_gene_2514_tx_4 1 - 65309 66677 . 2 504,803 0,566 -chrV 65309 66812 HC_gene_2514_tx_5 145 - 65309 66812 . 1 1504 0 -chrV 65309 66812 HC_gene_2514_tx_6 1 - 65309 66812 . 2 552,907 0,597 -chrV 65309 66812 HC_gene_2514_tx_7 1 - 65309 66812 . 2 496,907 0,597 -chrV 65309 67596 HC_gene_2514_tx_8 1 - 65309 67596 . 1 2288 0 -chrV 65309 68895 HC_gene_2514_tx_9 1 - 65309 68895 . 1 3587 0 -chrV 66588 67123 MC_gene_2265_tx_1 1 + 66588 67123 . 1 536 0 -chrV 67043 67596 HC_gene_2514_tx_10 88 - 67043 67596 . 1 554 0 -chrV 67043 67853 HC_gene_2514_tx_11 56 - 67043 67853 . 1 811 0 -chrV 67043 67942 HC_gene_2514_tx_12 63 - 67043 67942 . 1 900 0 -chrV 67043 68189 HC_gene_2514_tx_13 46 - 67043 68189 . 1 1147 0 -chrV 67043 68895 HC_gene_2514_tx_14 418 - 67043 68895 . 1 1853 0 -chrV 67043 68895 HC_gene_2514_tx_15 1 - 67043 68895 . 3 52,379,122 0,1300,1731 -chrV 67043 68895 HC_gene_2514_tx_16 1 - 67043 68895 . 2 752,611 0,1242 -chrV 67043 68895 HC_gene_2514_tx_17 1 - 67043 68895 . 2 788,901 0,952 -chrV 67043 68895 HC_gene_2514_tx_18 1 - 67043 68895 . 2 1324,401 0,1452 -chrV 67043 68895 HC_gene_2514_tx_19 1 - 67043 68895 . 2 1436,179 0,1674 -chrV 67043 68895 HC_gene_2514_tx_20 1 - 67043 68895 . 2 59,1699 0,154 -chrV 67043 68895 HC_gene_2514_tx_21 1 - 67043 68895 . 2 512,1282 0,571 -chrV 67357 68931 LC_gene_2266_tx_1 1 + 67357 68931 . 1 1575 0 -chrV 67470 68895 HC_gene_2514_tx_22 1 - 67470 68895 . 1 1426 0 -chrV 67472 67853 HC_gene_2514_tx_35 1 - 67472 67853 . 1 382 0 -chrV 67473 68895 HC_gene_2514_tx_23 1 - 67473 68895 . 1 1423 0 -chrV 67475 68895 HC_gene_2514_tx_24 2 - 67475 68895 . 1 1421 0 -chrV 67477 68895 HC_gene_2514_tx_25 2 - 67477 68895 . 1 1419 0 -chrV 67479 67853 HC_gene_2514_tx_36 1 - 67479 67853 . 1 375 0 -chrV 67479 68895 HC_gene_2514_tx_26 2 - 67479 68895 . 1 1417 0 -chrV 67481 68895 HC_gene_2514_tx_27 1 - 67481 68895 . 1 1415 0 -chrV 67482 68895 HC_gene_2514_tx_28 1 - 67482 68895 . 1 1414 0 -chrV 67485 67853 HC_gene_2514_tx_37 1 - 67485 67853 . 1 369 0 -chrV 67486 68895 HC_gene_2514_tx_29 1 - 67486 68895 . 1 1410 0 -chrV 67488 67853 HC_gene_2514_tx_38 1 - 67488 67853 . 1 366 0 -chrV 67488 67942 HC_gene_2514_tx_39 1 - 67488 67942 . 1 455 0 -chrV 67488 68895 HC_gene_2514_tx_30 1 - 67488 68895 . 1 1408 0 -chrV 67492 67942 HC_gene_2514_tx_40 1 - 67492 67942 . 1 451 0 -chrV 67493 67853 HC_gene_2514_tx_41 1 - 67493 67853 . 1 361 0 -chrV 67497 68895 HC_gene_2514_tx_31 2 - 67497 68895 . 1 1399 0 -chrV 67498 68895 HC_gene_2514_tx_32 1 - 67498 68895 . 1 1398 0 -chrV 67499 68895 HC_gene_2514_tx_33 1 - 67499 68895 . 1 1397 0 -chrV 67504 67853 HC_gene_2514_tx_42 1 - 67504 67853 . 1 350 0 -chrV 67507 68895 HC_gene_2514_tx_34 1 - 67507 68895 . 1 1389 0 -chrV 69049 70309 HC_gene_2267_tx_1 5 + 69049 70309 . 1 1261 0 -chrV 69404 70309 HC_gene_2267_tx_2 3 + 69404 70309 . 1 906 0 -chrV 69750 70309 HC_gene_2267_tx_3 173 + 69750 70309 . 1 560 0 -chrV 70429 73462 HC_gene_2268_tx_1 1 + 70429 73462 . 3 709,783,1420 0,746,1614 -chrV 70429 73462 HC_gene_2268_tx_2 14 + 70429 73462 . 1 3034 0 -chrV 70429 73462 HC_gene_2268_tx_3 1 + 70429 73462 . 2 1667,1233 0,1801 -chrV 70429 73462 HC_gene_2268_tx_4 1 + 70429 73462 . 2 1202,1395 0,1639 -chrV 70429 73462 HC_gene_2268_tx_5 1 + 70429 73462 . 2 1764,1178 0,1856 -chrV 70429 73462 HC_gene_2268_tx_6 1 + 70429 73462 . 2 1540,1423 0,1611 -chrV 70429 73462 HC_gene_2268_tx_7 1 + 70429 73462 . 2 1549,1384 0,1650 -chrV 70848 73462 HC_gene_2268_tx_8 6 + 70848 73462 . 1 2615 0 -chrV 72513 73462 HC_gene_2268_tx_9 6 + 72513 73462 . 1 950 0 -chrV 73627 75475 HC_gene_2269_tx_1 80 + 73627 75475 . 1 1849 0 -chrV 73627 75651 HC_gene_2269_tx_2 3 + 73627 75651 . 1 2025 0 -chrV 73810 75475 HC_gene_2269_tx_3 24 + 73810 75475 . 1 1666 0 -chrV 73918 75475 HC_gene_2269_tx_4 8 + 73918 75475 . 1 1558 0 -chrV 74038 75475 HC_gene_2269_tx_5 7 + 74038 75475 . 1 1438 0 -chrV 74038 75651 HC_gene_2269_tx_6 2 + 74038 75651 . 1 1614 0 -chrV 74038 75931 HC_gene_2269_tx_7 1 + 74038 75931 . 1 1894 0 -chrV 74515 75475 HC_gene_2269_tx_8 21 + 74515 75475 . 1 961 0 -chrV 74515 75651 HC_gene_2269_tx_9 2 + 74515 75651 . 1 1137 0 -chrV 75674 75931 HC_gene_2269_tx_10 1 + 75674 75931 . 1 258 0 -chrV 75760 77492 MC_gene_2515_tx_1 1 - 75760 77492 . 1 1733 0 -chrV 75836 78077 HC_gene_2270_tx_1 2 + 75836 78077 . 1 2242 0 -chrV 78036 79629 HC_gene_2271_tx_1 159 + 78036 79629 . 1 1594 0 -chrV 78036 79629 HC_gene_2271_tx_2 1 + 78036 79629 . 2 363,1146 0,448 -chrV 78036 79629 HC_gene_2271_tx_3 1 + 78036 79629 . 2 687,615 0,979 -chrV 78315 79629 HC_gene_2271_tx_4 21 + 78315 79629 . 1 1315 0 -chrV 78315 79629 HC_gene_2271_tx_5 1 + 78315 79629 . 2 921,315 0,1000 -chrV 78315 79629 HC_gene_2271_tx_6 1 + 78315 79629 . 2 115,366 0,949 -chrV 78458 79629 HC_gene_2271_tx_7 12 + 78458 79629 . 1 1172 0 -chrV 78614 79629 HC_gene_2271_tx_8 29 + 78614 79629 . 1 1016 0 -chrV 78693 79629 HC_gene_2271_tx_9 15 + 78693 79629 . 1 937 0 -chrV 78830 79629 HC_gene_2271_tx_10 49 + 78830 79629 . 1 800 0 -chrV 79076 79629 HC_gene_2271_tx_11 49 + 79076 79629 . 1 554 0 -chrV 79525 79815 HC_gene_2516_tx_1 8 - 79525 79815 . 1 291 0 -chrV 79525 79929 HC_gene_2516_tx_2 9 - 79525 79929 . 1 405 0 -chrV 79525 80067 HC_gene_2516_tx_3 76 - 79525 80067 . 1 543 0 -chrV 79525 80067 HC_gene_2516_tx_4 1 - 79525 80067 . 2 389,103 0,440 -chrV 80442 81267 HC_gene_2272_tx_1 179 + 80442 81267 . 1 826 0 -chrV 80442 81322 HC_gene_2272_tx_2 10 + 80442 81322 . 1 881 0 -chrV 80562 81267 HC_gene_2272_tx_3 12 + 80562 81267 . 1 706 0 -chrV 81243 81570 HC_gene_2517_tx_1 28 - 81243 81570 . 1 328 0 -chrV 81243 81675 HC_gene_2517_tx_2 18 - 81243 81675 . 1 433 0 -chrV 81243 81916 HC_gene_2517_tx_3 26 - 81243 81916 . 1 674 0 -chrV 81243 82408 HC_gene_2517_tx_4 5 - 81243 82408 . 1 1166 0 -chrV 81243 82461 HC_gene_2517_tx_5 15 - 81243 82461 . 1 1219 0 -chrV 81243 82461 HC_gene_2517_tx_6 1 - 81243 82461 . 2 72,1080 0,139 -chrV 81243 82570 HC_gene_2517_tx_7 14 - 81243 82570 . 1 1328 0 -chrV 81243 82728 HC_gene_2517_tx_8 112 - 81243 82728 . 1 1486 0 -chrV 81243 82728 HC_gene_2517_tx_9 1 - 81243 82728 . 2 772,453 0,1033 -chrV 81243 82728 HC_gene_2517_tx_10 1 - 81243 82728 . 2 470,955 0,531 -chrV 82966 83270 HC_gene_2518_tx_1 33 - 82966 83270 . 1 305 0 -chrV 82966 83381 HC_gene_2518_tx_2 32 - 82966 83381 . 1 416 0 -chrV 82966 83741 HC_gene_2518_tx_3 17 - 82966 83741 . 1 776 0 -chrV 82966 83741 HC_gene_2518_tx_4 1 - 82966 83741 . 2 313,317 0,459 -chrV 82966 84554 HC_gene_2518_tx_5 6 - 82966 84554 . 1 1589 0 -chrV 82966 84698 HC_gene_2518_tx_6 69 - 82966 84698 . 1 1733 0 -chrV 82966 84698 HC_gene_2518_tx_7 1 - 82966 84698 . 2 757,797 0,936 -chrV 82966 84698 HC_gene_2518_tx_8 1 - 82966 84698 . 2 525,942 0,791 -chrV 82966 84698 HC_gene_2518_tx_9 1 - 82966 84698 . 2 549,133 0,1600 -chrV 82966 84698 HC_gene_2518_tx_10 1 - 82966 84698 . 2 508,1044 0,689 -chrV 82966 84698 HC_gene_2518_tx_11 1 - 82966 84698 . 2 591,215 0,1518 -chrV 82966 84698 HC_gene_2518_tx_12 1 - 82966 84698 . 2 1057,133 0,1600 -chrV 84917 85250 LC_gene_2273_tx_1 1 + 84917 85250 . 1 334 0 -chrV 85439 86293 MC_gene_2519_tx_1 1 - 85439 86293 . 1 855 0 -chrV 85622 86368 HC_gene_2274_tx_1 2611 + 85622 86368 . 1 747 0 -chrV 85823 86368 HC_gene_2274_tx_2 268 + 85823 86368 . 1 546 0 -chrV 85967 86368 HC_gene_2274_tx_3 67 + 85967 86368 . 1 402 0 -chrV 86037 86368 HC_gene_2274_tx_4 173 + 86037 86368 . 1 332 0 -chrV 86885 90037 HC_gene_2275_tx_1 21 + 86885 90037 . 1 3153 0 -chrV 86885 90037 HC_gene_2275_tx_2 1 + 86885 90037 . 2 2985,89 0,3064 -chrV 87486 90037 HC_gene_2275_tx_3 3 + 87486 90037 . 1 2552 0 -chrV 88672 90037 HC_gene_2275_tx_4 8 + 88672 90037 . 1 1366 0 -chrV 88833 90037 HC_gene_2275_tx_5 12 + 88833 90037 . 1 1205 0 -chrV 89253 89991 MC_gene_2520_tx_1 1 - 89253 89991 . 1 739 0 -chrV 90221 93991 HC_gene_2276_tx_1 1 + 90221 93991 . 2 117,3607 0,164 -chrV 90221 93991 HC_gene_2276_tx_2 24 + 90221 93991 . 1 3771 0 -chrV 90221 93991 HC_gene_2276_tx_3 1 + 90221 93991 . 2 2591,1097 0,2674 -chrV 90221 93991 HC_gene_2276_tx_4 1 + 90221 93991 . 2 1837,1513 0,2258 -chrV 90444 93991 HC_gene_2276_tx_5 3 + 90444 93991 . 1 3548 0 -chrV 91923 93991 HC_gene_2276_tx_6 7 + 91923 93991 . 1 2069 0 -chrV 92701 93991 HC_gene_2276_tx_7 16 + 92701 93991 . 1 1291 0 -chrV 93207 93991 HC_gene_2276_tx_8 25 + 93207 93991 . 1 785 0 -chrV 93330 93991 HC_gene_2276_tx_9 29 + 93330 93991 . 1 662 0 -chrV 96094 96615 HC_gene_2277_tx_1 3 + 96094 96615 . 1 522 0 -chrV 96094 96743 HC_gene_2277_tx_2 4 + 96094 96743 . 1 650 0 -chrV 96094 96949 HC_gene_2277_tx_3 1 + 96094 96949 . 1 856 0 -chrV 96491 97737 HC_gene_2521_tx_1 1 - 96491 97737 . 1 1247 0 -chrV 96491 97862 HC_gene_2521_tx_2 3 - 96491 97862 . 1 1372 0 -chrV 96589 97737 HC_gene_2521_tx_3 2 - 96589 97737 . 1 1149 0 -chrV 96589 97862 HC_gene_2521_tx_4 12 - 96589 97862 . 1 1274 0 -chrV 96739 97737 HC_gene_2521_tx_5 2 - 96739 97737 . 1 999 0 -chrV 96739 97862 HC_gene_2521_tx_6 31 - 96739 97862 . 1 1124 0 -chrV 96739 99434 HC_gene_2522_tx_1 1 - 96739 99434 . 1 2696 0 -chrV 98073 98440 HC_gene_2278_tx_1 1 + 98073 98440 . 1 368 0 -chrV 98073 98541 HC_gene_2278_tx_2 3 + 98073 98541 . 1 469 0 -chrV 98073 98598 HC_gene_2278_tx_3 1 + 98073 98598 . 1 526 0 -chrV 98073 99183 HC_gene_2278_tx_4 1 + 98073 99183 . 1 1111 0 -chrV 98073 99665 HC_gene_2278_tx_5 1 + 98073 99665 . 1 1593 0 -chrV 98715 99255 HC_gene_2278_tx_6 2 + 98715 99255 . 1 541 0 -chrV 98715 99665 HC_gene_2278_tx_7 1 + 98715 99665 . 1 951 0 -chrV 99685 100365 HC_gene_2279_tx_1 1 + 99685 100365 . 1 681 0 -chrV 100235 100499 MC_gene_2523_tx_1 1 - 100235 100499 . 1 265 0 -chrV 100608 101510 MC_gene_2524_tx_1 1 - 100608 101510 . 1 903 0 -chrV 100684 101506 MC_gene_2524_tx_2 1 - 100684 101506 . 1 823 0 -chrV 100706 101510 HC_gene_2280_tx_1 2240 + 100706 101510 . 1 805 0 -chrV 100968 101510 HC_gene_2280_tx_2 96 + 100968 101510 . 1 543 0 -chrV 101060 101510 HC_gene_2280_tx_3 311 + 101060 101510 . 1 451 0 -chrV 101181 101510 HC_gene_2280_tx_4 148 + 101181 101510 . 1 330 0 -chrV 101852 102395 HC_gene_2281_tx_1 1316 + 101852 102395 . 1 544 0 -chrV 102024 102395 HC_gene_2281_tx_2 109 + 102024 102395 . 1 372 0 -chrV 102311 106188 HC_gene_2525_tx_1 6 - 102311 106188 . 1 3878 0 -chrV 107176 108306 HC_gene_2282_tx_1 2 + 107176 108306 . 1 1131 0 -chrV 107176 108307 HC_gene_2282_tx_2 9 + 107176 108307 . 1 1132 0 -chrV 107176 108308 HC_gene_2282_tx_3 2 + 107176 108308 . 1 1133 0 -chrV 107176 108309 HC_gene_2282_tx_4 1 + 107176 108309 . 1 1134 0 -chrV 107176 108310 HC_gene_2282_tx_5 4 + 107176 108310 . 1 1135 0 -chrV 107176 108313 HC_gene_2282_tx_6 1 + 107176 108313 . 1 1138 0 -chrV 107176 108314 HC_gene_2282_tx_7 3 + 107176 108314 . 1 1139 0 -chrV 107176 108316 HC_gene_2282_tx_8 1 + 107176 108316 . 1 1141 0 -chrV 107176 108317 HC_gene_2282_tx_9 2 + 107176 108317 . 1 1142 0 -chrV 107176 108321 HC_gene_2282_tx_10 2 + 107176 108321 . 1 1146 0 -chrV 107176 108508 HC_gene_2282_tx_11 85 + 107176 108508 . 1 1333 0 -chrV 107176 108508 HC_gene_2282_tx_12 1 + 107176 108508 . 2 514,715 0,618 -chrV 107782 108306 HC_gene_2282_tx_13 1 + 107782 108306 . 1 525 0 -chrV 107782 108307 HC_gene_2282_tx_14 2 + 107782 108307 . 1 526 0 -chrV 107782 108508 HC_gene_2282_tx_19 7 + 107782 108508 . 1 727 0 -chrV 107887 108306 HC_gene_2282_tx_15 1 + 107887 108306 . 1 420 0 -chrV 107887 108307 HC_gene_2282_tx_16 2 + 107887 108307 . 1 421 0 -chrV 107887 108310 HC_gene_2282_tx_17 2 + 107887 108310 . 1 424 0 -chrV 107887 108314 HC_gene_2282_tx_18 2 + 107887 108314 . 1 428 0 -chrV 107887 108508 HC_gene_2282_tx_20 20 + 107887 108508 . 1 622 0 -chrV 108371 111113 HC_gene_2526_tx_1 2 - 108371 111113 . 1 2743 0 -chrV 108710 111113 HC_gene_2526_tx_2 1 - 108710 111113 . 1 2404 0 -chrV 110807 111171 LC_gene_2283_tx_1 1 + 110807 111171 . 1 365 0 -chrV 111353 115875 HC_gene_2284_tx_1 1 + 111353 115875 . 3 1602,1541,1256 0,1673,3267 -chrV 111353 115875 HC_gene_2284_tx_2 1 + 111353 115875 . 1 4523 0 -chrV 111353 115958 HC_gene_2284_tx_3 2 + 111353 115958 . 1 4606 0 -chrV 111353 115958 HC_gene_2284_tx_4 1 + 111353 115958 . 2 3108,1417 0,3189 -chrV 114241 115875 HC_gene_2284_tx_5 1 + 114241 115875 . 1 1635 0 -chrV 114241 115958 HC_gene_2284_tx_6 1 + 114241 115958 . 1 1718 0 -chrV 114846 115875 HC_gene_2284_tx_7 6 + 114846 115875 . 1 1030 0 -chrV 114938 115875 HC_gene_2284_tx_8 5 + 114938 115875 . 1 938 0 -chrV 114938 115958 HC_gene_2284_tx_9 1 + 114938 115958 . 2 545,411 0,610 -chrV 114938 115958 HC_gene_2284_tx_10 1 + 114938 115958 . 1 1021 0 -chrV 115432 115875 HC_gene_2284_tx_11 12 + 115432 115875 . 1 444 0 -chrV 115432 115958 HC_gene_2284_tx_12 4 + 115432 115958 . 1 527 0 -chrV 115806 116296 MC_gene_2527_tx_1 1 - 115806 116296 . 1 491 0 -chrV 116282 117053 MC_gene_2285_tx_1 1 + 116282 117053 . 1 772 0 -chrV 117146 117591 HC_gene_2286_tx_1 419 + 117146 117591 . 1 446 0 -chrV 117147 117583 LC_gene_2528_tx_1 1 - 117147 117583 . 1 437 0 -chrV 117645 117972 HC_gene_2529_tx_1 5 - 117645 117972 . 1 328 0 -chrV 117645 118119 HC_gene_2529_tx_2 12 - 117645 118119 . 1 475 0 -chrV 117897 118119 HC_gene_2529_tx_3 11 - 117897 118119 . 1 223 0 -chrV 118165 118401 HC_gene_2287_tx_1 1 + 118165 118401 . 1 237 0 -chrV 118165 118723 HC_gene_2287_tx_2 1 + 118165 118723 . 1 559 0 -chrV 118507 120368 HC_gene_2530_tx_1 5 - 118507 120368 . 1 1862 0 -chrV 118507 121312 HC_gene_2530_tx_2 1 - 118507 121312 . 1 2806 0 -chrV 121466 122402 HC_gene_2288_tx_1 60 + 121466 122402 . 1 937 0 -chrV 122329 122647 HC_gene_2531_tx_1 276 - 122329 122647 . 1 319 0 -chrV 122329 122764 HC_gene_2531_tx_2 255 - 122329 122764 . 1 436 0 -chrV 122329 122960 HC_gene_2531_tx_3 2644 - 122329 122960 . 1 632 0 -chrV 122683 122941 HC_gene_2532_tx_1 2 - 122683 122941 . 1 259 0 -chrV 122683 122945 HC_gene_2532_tx_2 1 - 122683 122945 . 1 263 0 -chrV 122683 122960 HC_gene_2532_tx_3 16 - 122683 122960 . 1 278 0 -chrV 122683 122960 HC_gene_2532_tx_4 1 - 122683 122960 . 2 89,134 0,144 -chrV 122683 122984 HC_gene_2532_tx_5 1 - 122683 122984 . 1 302 0 -chrV 123183 124761 HC_gene_2289_tx_1 4 + 123183 124761 . 1 1579 0 -chrV 123504 124153 MC_gene_2533_tx_1 1 - 123504 124153 . 1 650 0 -chrV 123646 124761 HC_gene_2289_tx_2 30 + 123646 124761 . 1 1116 0 -chrV 123646 124761 HC_gene_2289_tx_3 1 + 123646 124761 . 2 211,733 0,383 -chrV 123959 124761 HC_gene_2289_tx_4 29 + 123959 124761 . 1 803 0 -chrV 124639 124945 HC_gene_2534_tx_1 6 - 124639 124945 . 1 307 0 -chrV 124639 126402 HC_gene_2534_tx_2 14 - 124639 126402 . 1 1764 0 -chrV 124795 126483 MC_gene_2290_tx_1 1 + 124795 126483 . 1 1689 0 -chrV 126589 128340 HC_gene_2291_tx_1 35 + 126589 128340 . 1 1752 0 -chrV 126589 128340 HC_gene_2291_tx_2 1 + 126589 128340 . 2 230,1475 0,277 -chrV 126589 128340 HC_gene_2291_tx_3 1 + 126589 128340 . 2 651,964 0,788 -chrV 126589 128340 HC_gene_2291_tx_4 1 + 126589 128340 . 2 951,715 0,1037 -chrV 126589 128340 HC_gene_2291_tx_5 1 + 126589 128340 . 2 562,784 0,968 -chrV 126589 128340 HC_gene_2291_tx_6 1 + 126589 128340 . 2 964,734 0,1018 -chrV 126589 128753 HC_gene_2291_tx_7 1 + 126589 128753 . 1 2165 0 -chrV 126787 128340 HC_gene_2291_tx_8 12 + 126787 128340 . 1 1554 0 -chrV 126787 128340 HC_gene_2291_tx_9 1 + 126787 128340 . 2 821,679 0,875 -chrV 126787 128753 HC_gene_2291_tx_10 1 + 126787 128753 . 1 1967 0 -chrV 126965 128340 HC_gene_2291_tx_11 7 + 126965 128340 . 1 1376 0 -chrV 127820 128340 HC_gene_2291_tx_12 14 + 127820 128340 . 1 521 0 -chrV 128587 130618 HC_gene_2292_tx_1 9 + 128587 130618 . 1 2032 0 -chrV 128587 130618 HC_gene_2292_tx_2 1 + 128587 130618 . 2 1049,875 0,1157 -chrV 128587 130736 HC_gene_2292_tx_3 1 + 128587 130736 . 1 2150 0 -chrV 128587 131011 HC_gene_2292_tx_4 7 + 128587 131011 . 1 2425 0 -chrV 130215 130736 HC_gene_2292_tx_5 1 + 130215 130736 . 1 522 0 -chrV 130215 131011 HC_gene_2292_tx_6 4 + 130215 131011 . 1 797 0 -chrV 130578 131011 HC_gene_2292_tx_7 9 + 130578 131011 . 1 434 0 -chrV 130915 131424 LC_gene_2535_tx_1 1 - 130915 131424 . 1 510 0 -chrV 131676 132662 HC_gene_2293_tx_1 52 + 131676 132662 . 2 101,763 0,224 -chrV 131676 132662 HC_gene_2293_tx_2 12 + 131676 132662 . 1 987 0 -chrV 131676 132662 HC_gene_2293_tx_3 1 + 131676 132662 . 2 101,737 0,250 -chrV 131676 132662 HC_gene_2293_tx_4 1 + 131676 132662 . 2 101,782 0,205 -chrV 132035 132662 HC_gene_2293_tx_5 15 + 132035 132662 . 1 628 0 -chrV 132138 132662 HC_gene_2293_tx_6 8 + 132138 132662 . 1 525 0 -chrV 132204 132662 HC_gene_2293_tx_7 13 + 132204 132662 . 1 459 0 -chrV 132483 132722 HC_gene_2536_tx_1 1 - 132483 132722 . 1 240 0 -chrV 132538 132722 HC_gene_2536_tx_2 4 - 132538 132722 . 1 185 0 -chrV 132975 135269 LC_gene_2537_tx_1 1 - 132975 135269 . 1 2295 0 -chrV 133088 135349 HC_gene_2294_tx_1 17 + 133088 135349 . 1 2262 0 -chrV 133088 135349 HC_gene_2294_tx_2 1 + 133088 135349 . 2 960,1262 0,1000 -chrV 133365 135349 HC_gene_2294_tx_3 3 + 133365 135349 . 1 1985 0 -chrV 133480 135349 HC_gene_2294_tx_4 2 + 133480 135349 . 1 1870 0 -chrV 133573 135349 HC_gene_2294_tx_5 1 + 133573 135349 . 1 1777 0 -chrV 133629 135349 HC_gene_2294_tx_6 2 + 133629 135349 . 1 1721 0 -chrV 133998 135349 HC_gene_2294_tx_7 10 + 133998 135349 . 1 1352 0 -chrV 134061 135349 HC_gene_2294_tx_8 5 + 134061 135349 . 1 1289 0 -chrV 134175 135349 HC_gene_2294_tx_9 1 + 134175 135349 . 1 1175 0 -chrV 135734 136398 HC_gene_2538_tx_1 2 - 135734 136398 . 1 665 0 -chrV 137154 138061 HC_gene_2295_tx_1 1 + 137154 138061 . 1 908 0 -chrV 137154 138513 HC_gene_2295_tx_2 1 + 137154 138513 . 1 1360 0 -chrV 137439 138453 LC_gene_2539_tx_1 1 - 137439 138453 . 1 1015 0 -chrV 138821 139517 HC_gene_2540_tx_1 157 - 138821 139517 . 1 697 0 -chrV 138821 139720 HC_gene_2540_tx_2 143 - 138821 139720 . 1 900 0 -chrV 138821 139900 HC_gene_2540_tx_3 181 - 138821 139900 . 1 1080 0 -chrV 138821 139969 HC_gene_2540_tx_4 47 - 138821 139969 . 1 1149 0 -chrV 138821 140109 HC_gene_2540_tx_5 297 - 138821 140109 . 1 1289 0 -chrV 138821 140336 HC_gene_2540_tx_6 1170 - 138821 140336 . 1 1516 0 -chrV 138879 140050 LC_gene_2296_tx_1 1 + 138879 140050 . 1 1172 0 -chrV 139745 140336 HC_gene_2540_tx_7 6 - 139745 140336 . 1 592 0 -chrV 139750 140336 HC_gene_2540_tx_8 7 - 139750 140336 . 1 587 0 -chrV 139815 140336 HC_gene_2540_tx_9 12 - 139815 140336 . 1 522 0 -chrV 140353 140734 LC_gene_2541_tx_1 1 - 140353 140734 . 1 382 0 -chrV 141499 142501 HC_gene_2297_tx_1 1 + 141499 142501 . 1 1003 0 -chrV 141639 142501 HC_gene_2297_tx_2 5 + 141639 142501 . 1 863 0 -chrV 143024 144060 HC_gene_2298_tx_1 2 + 143024 144060 . 1 1037 0 -chrV 143108 143925 HC_gene_2298_tx_2 10 + 143108 143925 . 1 818 0 -chrV 143108 144060 HC_gene_2298_tx_3 5 + 143108 144060 . 1 953 0 -chrV 143603 143925 HC_gene_2298_tx_4 4 + 143603 143925 . 1 323 0 -chrV 143603 144060 HC_gene_2298_tx_5 5 + 143603 144060 . 1 458 0 -chrV 143804 144024 MC_gene_2542_tx_1 1 - 143804 144024 . 1 221 0 -chrV 144303 145526 HC_gene_2299_tx_1 4 + 144303 145526 . 1 1224 0 -chrV 144303 145526 HC_gene_2299_tx_2 1 + 144303 145526 . 2 333,797 0,427 -chrV 144303 145673 HC_gene_2299_tx_3 33 + 144303 145673 . 1 1371 0 -chrV 144303 145673 HC_gene_2299_tx_4 1 + 144303 145673 . 2 501,659 0,712 -chrV 144303 145728 HC_gene_2299_tx_5 11 + 144303 145728 . 1 1426 0 -chrV 144303 145798 HC_gene_2299_tx_6 1 + 144303 145798 . 1 1496 0 -chrV 144575 145526 HC_gene_2299_tx_7 1 + 144575 145526 . 1 952 0 -chrV 144575 145673 HC_gene_2299_tx_8 3 + 144575 145673 . 1 1099 0 -chrV 144575 145798 HC_gene_2299_tx_9 1 + 144575 145798 . 1 1224 0 -chrV 145806 146770 HC_gene_2543_tx_1 16 - 145806 146770 . 1 965 0 -chrV 145806 146770 HC_gene_2543_tx_2 1 - 145806 146770 . 2 468,273 0,692 -chrV 146908 148123 HC_gene_2300_tx_1 3 + 146908 148123 . 1 1216 0 -chrV 146908 148258 HC_gene_2300_tx_2 4 + 146908 148258 . 1 1351 0 -chrV 146908 148669 HC_gene_2300_tx_3 7 + 146908 148669 . 1 1762 0 -chrV 147159 147911 LC_gene_2544_tx_1 1 - 147159 147911 . 1 753 0 -chrV 147684 148669 HC_gene_2300_tx_4 3 + 147684 148669 . 1 986 0 -chrV 148156 148669 HC_gene_2300_tx_5 7 + 148156 148669 . 2 39,387 0,127 -chrV 148156 148669 HC_gene_2300_tx_6 236 + 148156 148669 . 1 514 0 -chrV 148270 148669 HC_gene_2300_tx_7 91 + 148270 148669 . 1 400 0 -chrV 148648 149371 HC_gene_2545_tx_1 15 - 148648 149371 . 1 724 0 -chrV 148648 149371 HC_gene_2545_tx_2 1 - 148648 149371 . 2 345,241 0,483 -chrV 148648 149490 HC_gene_2545_tx_3 20 - 148648 149490 . 1 843 0 -chrV 148648 149566 HC_gene_2545_tx_4 13 - 148648 149566 . 1 919 0 -chrV 148648 149756 HC_gene_2545_tx_5 20 - 148648 149756 . 1 1109 0 -chrV 148648 149816 HC_gene_2545_tx_6 6 - 148648 149816 . 1 1169 0 -chrV 148648 150065 HC_gene_2545_tx_7 130 - 148648 150065 . 1 1418 0 -chrV 148648 150065 HC_gene_2545_tx_8 1 - 148648 150065 . 2 597,784 0,634 -chrV 148648 150065 HC_gene_2545_tx_9 1 - 148648 150065 . 2 236,1086 0,332 -chrV 148648 150065 HC_gene_2545_tx_10 1 - 148648 150065 . 2 735,472 0,946 -chrV 149998 150596 HC_gene_2546_tx_1 4 - 149998 150596 . 1 599 0 -chrV 149998 150768 HC_gene_2546_tx_2 1 - 149998 150768 . 1 771 0 -chrV 149998 150834 HC_gene_2546_tx_3 1 - 149998 150834 . 1 837 0 -chrV 149998 150991 HC_gene_2546_tx_4 1 - 149998 150991 . 1 994 0 -chrV 149998 151003 HC_gene_2546_tx_5 10 - 149998 151003 . 1 1006 0 -chrV 150205 150596 HC_gene_2546_tx_6 71 - 150205 150596 . 1 392 0 -chrV 150205 150596 HC_gene_2546_tx_7 1 - 150205 150596 . 2 205,101 0,291 -chrV 150205 150768 HC_gene_2546_tx_8 51 - 150205 150768 . 1 564 0 -chrV 150205 150834 HC_gene_2546_tx_9 17 - 150205 150834 . 1 630 0 -chrV 150205 151003 HC_gene_2546_tx_10 204 - 150205 151003 . 1 799 0 -chrV 150205 151003 HC_gene_2546_tx_11 1 - 150205 151003 . 2 299,368 0,431 -chrV 150205 151003 HC_gene_2546_tx_12 1 - 150205 151003 . 2 416,142 0,657 -chrV 151197 151422 HC_gene_2301_tx_1 2 + 151197 151422 . 1 226 0 -chrV 151212 151890 HC_gene_2547_tx_1 8 - 151212 151890 . 1 679 0 -chrV 151520 151890 HC_gene_2547_tx_2 29 - 151520 151890 . 1 371 0 -chrV 151542 151976 MC_gene_2302_tx_1 1 + 151542 151976 . 1 435 0 -chrV 152352 153164 LC_gene_2548_tx_1 1 - 152352 153164 . 1 813 0 -chrV 152838 153520 HC_gene_2303_tx_1 1 + 152838 153520 . 1 683 0 -chrV 153478 155899 HC_gene_2304_tx_1 7 + 153478 155899 . 1 2422 0 -chrV 153478 155899 HC_gene_2304_tx_2 1 + 153478 155899 . 2 1208,1092 0,1330 -chrV 153478 156111 HC_gene_2304_tx_3 18 + 153478 156111 . 1 2634 0 -chrV 153478 156111 HC_gene_2304_tx_4 1 + 153478 156111 . 2 1192,1371 0,1263 -chrV 153478 156111 HC_gene_2304_tx_5 1 + 153478 156111 . 2 1453,1124 0,1510 -chrV 153698 155899 HC_gene_2304_tx_6 1 + 153698 155899 . 1 2202 0 -chrV 153698 156111 HC_gene_2304_tx_7 4 + 153698 156111 . 1 2414 0 -chrV 154891 156111 HC_gene_2304_tx_8 7 + 154891 156111 . 1 1221 0 -chrV 156001 156485 HC_gene_2549_tx_1 43 - 156001 156485 . 1 485 0 -chrV 156738 157583 HC_gene_2305_tx_1 4 + 156738 157583 . 1 846 0 -chrV 156738 157584 HC_gene_2305_tx_2 1 + 156738 157584 . 1 847 0 -chrV 156738 157585 HC_gene_2305_tx_3 9 + 156738 157585 . 1 848 0 -chrV 156738 157586 HC_gene_2305_tx_4 1 + 156738 157586 . 1 849 0 -chrV 156738 157587 HC_gene_2305_tx_5 4 + 156738 157587 . 1 850 0 -chrV 156738 157588 HC_gene_2305_tx_6 16 + 156738 157588 . 1 851 0 -chrV 156738 157589 HC_gene_2305_tx_7 4 + 156738 157589 . 1 852 0 -chrV 156738 157590 HC_gene_2305_tx_8 7 + 156738 157590 . 1 853 0 -chrV 156738 157594 HC_gene_2305_tx_9 1 + 156738 157594 . 2 159,662 0,195 -chrV 156738 157595 HC_gene_2305_tx_10 1 + 156738 157595 . 2 57,397 0,461 -chrV 156738 157595 HC_gene_2305_tx_11 12 + 156738 157595 . 1 858 0 -chrV 156738 157595 HC_gene_2305_tx_12 1 + 156738 157595 . 2 211,609 0,249 -chrV 156738 157747 HC_gene_2305_tx_13 4 + 156738 157747 . 1 1010 0 -chrV 156971 157585 HC_gene_2305_tx_14 3 + 156971 157585 . 1 615 0 -chrV 156971 157588 HC_gene_2305_tx_15 1 + 156971 157588 . 1 618 0 -chrV 156971 157589 HC_gene_2305_tx_16 1 + 156971 157589 . 1 619 0 -chrV 156971 157590 HC_gene_2305_tx_17 3 + 156971 157590 . 1 620 0 -chrV 156971 157594 HC_gene_2305_tx_18 1 + 156971 157594 . 1 624 0 -chrV 156971 157595 HC_gene_2305_tx_19 4 + 156971 157595 . 1 625 0 -chrV 156971 157747 HC_gene_2305_tx_20 1 + 156971 157747 . 1 777 0 -chrV 157150 157585 HC_gene_2305_tx_21 5 + 157150 157585 . 1 436 0 -chrV 157150 157588 HC_gene_2305_tx_22 2 + 157150 157588 . 1 439 0 -chrV 157150 157747 HC_gene_2305_tx_23 1 + 157150 157747 . 1 598 0 -chrV 157496 158266 HC_gene_2550_tx_1 4 - 157496 158266 . 1 771 0 -chrV 157496 158676 HC_gene_2550_tx_3 2 - 157496 158676 . 1 1181 0 -chrV 157496 158876 HC_gene_2550_tx_4 3 - 157496 158876 . 1 1381 0 -chrV 157496 158876 HC_gene_2550_tx_5 1 - 157496 158876 . 2 268,1037 0,344 -chrV 157496 158974 HC_gene_2550_tx_6 12 - 157496 158974 . 1 1479 0 -chrV 157496 158974 HC_gene_2550_tx_7 1 - 157496 158974 . 2 991,322 0,1157 -chrV 157496 159139 HC_gene_2550_tx_8 17 - 157496 159139 . 2 1499,52 0,1592 -chrV 157496 159139 HC_gene_2550_tx_9 2 - 157496 159139 . 2 1499,56 0,1588 -chrV 157496 159139 HC_gene_2550_tx_10 1 - 157496 159139 . 2 1105,458 0,1186 -chrV 157496 159139 HC_gene_2550_tx_11 1 - 157496 159139 . 3 611,787,52 0,712,1592 -chrV 157579 158974 HC_gene_2550_tx_12 1 - 157579 158974 . 1 1396 0 -chrV 157579 159139 HC_gene_2550_tx_13 3 - 157579 159139 . 2 1416,52 0,1509 -chrV 157579 159139 HC_gene_2550_tx_14 1 - 157579 159139 . 1 1561 0 -chrV 157579 159139 HC_gene_2550_tx_15 1 - 157579 159139 . 3 580,777,52 0,639,1509 -chrV 157645 158266 HC_gene_2550_tx_2 19 - 157645 158266 . 1 622 0 -chrV 157645 158676 HC_gene_2550_tx_16 18 - 157645 158676 . 1 1032 0 -chrV 157645 158876 HC_gene_2550_tx_17 6 - 157645 158876 . 1 1232 0 -chrV 157645 158974 HC_gene_2550_tx_18 1 - 157645 158974 . 2 745,433 0,897 -chrV 157645 158974 HC_gene_2550_tx_19 52 - 157645 158974 . 1 1330 0 -chrV 157645 159139 HC_gene_2550_tx_20 67 - 157645 159139 . 2 1350,52 0,1443 -chrV 157645 159139 HC_gene_2550_tx_21 3 - 157645 159139 . 1 1495 0 -chrV 157645 159139 HC_gene_2550_tx_22 2 - 157645 159139 . 2 1350,56 0,1439 -chrV 157658 159203 LC_gene_2306_tx_1 1 + 157658 159203 . 1 1546 0 -chrV 159065 160246 LC_gene_2551_tx_1 1 - 159065 160246 . 1 1182 0 -chrV 159332 160530 HC_gene_2307_tx_1 1 + 159332 160530 . 2 229,769 0,430 -chrV 159332 160530 HC_gene_2307_tx_2 3 + 159332 160530 . 1 1199 0 -chrV 159568 160530 HC_gene_2307_tx_3 1 + 159568 160530 . 1 963 0 -chrV 159570 160530 HC_gene_2307_tx_4 1 + 159570 160530 . 1 961 0 -chrV 159571 160530 HC_gene_2307_tx_5 76 + 159571 160530 . 1 960 0 -chrV 159571 160616 HC_gene_2307_tx_6 1 + 159571 160616 . 1 1046 0 -chrV 159580 160530 HC_gene_2307_tx_7 2 + 159580 160530 . 1 951 0 -chrV 159582 160530 HC_gene_2307_tx_8 3 + 159582 160530 . 1 949 0 -chrV 159583 160530 HC_gene_2307_tx_9 6 + 159583 160530 . 1 948 0 -chrV 159586 160530 HC_gene_2307_tx_10 2 + 159586 160530 . 1 945 0 -chrV 159587 160530 HC_gene_2307_tx_11 16 + 159587 160530 . 1 944 0 -chrV 159588 160530 HC_gene_2307_tx_12 13 + 159588 160530 . 1 943 0 -chrV 159589 160530 HC_gene_2307_tx_13 10 + 159589 160530 . 1 942 0 -chrV 159590 160530 HC_gene_2307_tx_14 4 + 159590 160530 . 1 941 0 -chrV 159591 160530 HC_gene_2307_tx_15 3 + 159591 160530 . 1 940 0 -chrV 159592 160530 HC_gene_2307_tx_16 2 + 159592 160530 . 1 939 0 -chrV 159594 160530 HC_gene_2307_tx_17 1 + 159594 160530 . 1 937 0 -chrV 159595 160530 HC_gene_2307_tx_18 2 + 159595 160530 . 1 936 0 -chrV 159596 160530 HC_gene_2307_tx_19 2 + 159596 160530 . 1 935 0 -chrV 159597 160530 HC_gene_2307_tx_20 3 + 159597 160530 . 1 934 0 -chrV 159604 160530 HC_gene_2307_tx_21 1 + 159604 160530 . 1 927 0 -chrV 159608 160530 HC_gene_2307_tx_22 3 + 159608 160530 . 1 923 0 -chrV 159619 160530 HC_gene_2307_tx_23 1 + 159619 160530 . 1 912 0 -chrV 160508 162581 HC_gene_2308_tx_1 19 + 160508 162581 . 1 2074 0 -chrV 160508 162581 HC_gene_2308_tx_2 1 + 160508 162581 . 2 1509,501 0,1573 -chrV 161284 162446 HC_gene_2552_tx_1 1 - 161284 162446 . 1 1163 0 -chrV 161411 162446 HC_gene_2552_tx_2 2 - 161411 162446 . 1 1036 0 -chrV 162683 164382 HC_gene_2309_tx_1 127 + 162683 164382 . 1 1700 0 -chrV 162683 164382 HC_gene_2309_tx_2 1 + 162683 164382 . 2 653,924 0,776 -chrV 162683 164382 HC_gene_2309_tx_3 1 + 162683 164382 . 2 802,701 0,999 -chrV 162683 164382 HC_gene_2309_tx_4 1 + 162683 164382 . 2 1203,434 0,1266 -chrV 162683 164382 HC_gene_2309_tx_5 1 + 162683 164382 . 2 91,1283 0,417 -chrV 162683 164524 HC_gene_2309_tx_6 1 + 162683 164524 . 1 1842 0 -chrV 162699 164524 HC_gene_2309_tx_7 1 + 162699 164524 . 1 1826 0 -chrV 162712 164524 HC_gene_2309_tx_8 1 + 162712 164524 . 1 1813 0 -chrV 162832 164382 HC_gene_2309_tx_9 19 + 162832 164382 . 1 1551 0 -chrV 163095 164382 HC_gene_2309_tx_10 15 + 163095 164382 . 1 1288 0 -chrV 163346 164382 HC_gene_2309_tx_11 15 + 163346 164382 . 1 1037 0 -chrV 163573 164382 HC_gene_2309_tx_12 9 + 163573 164382 . 1 810 0 -chrV 163675 164382 HC_gene_2309_tx_13 38 + 163675 164382 . 1 708 0 -chrV 164407 164833 LC_gene_2553_tx_1 1 - 164407 164833 . 1 427 0 -chrV 164504 166230 HC_gene_2310_tx_1 6 + 164504 166230 . 1 1727 0 -chrV 165884 166518 HC_gene_2554_tx_1 1 - 165884 166518 . 1 635 0 -chrV 165884 166917 HC_gene_2554_tx_2 1 - 165884 166917 . 1 1034 0 -chrV 166067 166518 HC_gene_2554_tx_7 25 - 166067 166518 . 1 452 0 -chrV 166067 166917 HC_gene_2554_tx_3 21 - 166067 166917 . 1 851 0 -chrV 166067 166917 HC_gene_2554_tx_4 1 - 166067 166917 . 2 699,49 0,802 -chrV 166067 166917 HC_gene_2554_tx_5 8 - 166067 166917 . 2 705,43 0,808 -chrV 166067 166917 HC_gene_2554_tx_6 1 - 166067 166917 . 2 679,49 0,802 -chrV 166490 166973 MC_gene_2311_tx_1 1 + 166490 166973 . 1 484 0 -chrV 167037 167806 HC_gene_2312_tx_1 12 + 167037 167806 . 1 770 0 -chrV 167037 167935 HC_gene_2312_tx_2 5 + 167037 167935 . 1 899 0 -chrV 167037 168028 HC_gene_2312_tx_3 1 + 167037 168028 . 1 992 0 -chrV 167701 170098 HC_gene_2555_tx_1 2 - 167701 170098 . 1 2398 0 -chrV 167701 170384 HC_gene_2555_tx_2 6 - 167701 170384 . 1 2684 0 -chrV 167701 170628 HC_gene_2555_tx_3 1 - 167701 170628 . 2 1186,1619 0,1309 -chrV 167701 170628 HC_gene_2555_tx_4 2 - 167701 170628 . 1 2928 0 -chrV 167701 170779 HC_gene_2555_tx_5 1 - 167701 170779 . 1 3079 0 -chrV 167701 170999 HC_gene_2555_tx_6 1 - 167701 170999 . 2 1186,1990 0,1309 -chrV 167701 170999 HC_gene_2555_tx_7 1 - 167701 170999 . 1 3299 0 -chrV 167701 171096 HC_gene_2555_tx_8 1 - 167701 171096 . 1 3396 0 -chrV 167701 171566 HC_gene_2555_tx_9 1 - 167701 171566 . 2 1282,2477 0,1389 -chrV 167701 171566 HC_gene_2555_tx_10 1 - 167701 171566 . 1 3866 0 -chrV 167701 171849 HC_gene_2555_tx_11 1 - 167701 171849 . 2 2649,769 0,3380 -chrV 167701 171868 HC_gene_2555_tx_12 1 - 167701 171868 . 2 2604,1446 0,2722 -chrV 167701 171868 HC_gene_2555_tx_13 5 - 167701 171868 . 1 4168 0 -chrV 167701 171868 HC_gene_2555_tx_14 1 - 167701 171868 . 2 2640,1471 0,2697 -chrV 167701 171868 HC_gene_2555_tx_15 1 - 167701 171868 . 2 2046,2077 0,2091 -chrV 169444 170384 HC_gene_2555_tx_16 1 - 169444 170384 . 1 941 0 -chrV 169444 170779 HC_gene_2555_tx_17 1 - 169444 170779 . 1 1336 0 -chrV 172080 172638 HC_gene_2313_tx_1 11 + 172080 172638 . 1 559 0 -chrV 172080 172639 HC_gene_2313_tx_2 18 + 172080 172639 . 1 560 0 -chrV 172080 172640 HC_gene_2313_tx_3 15 + 172080 172640 . 1 561 0 -chrV 172080 172641 HC_gene_2313_tx_4 7 + 172080 172641 . 1 562 0 -chrV 172080 172642 HC_gene_2313_tx_5 12 + 172080 172642 . 1 563 0 -chrV 172080 172643 HC_gene_2313_tx_6 18 + 172080 172643 . 1 564 0 -chrV 172080 172644 HC_gene_2313_tx_7 69 + 172080 172644 . 1 565 0 -chrV 172080 172645 HC_gene_2313_tx_8 281 + 172080 172645 . 1 566 0 -chrV 172080 172645 HC_gene_2313_tx_9 1 + 172080 172645 . 2 82,409 0,157 -chrV 172080 172646 HC_gene_2313_tx_10 23 + 172080 172646 . 1 567 0 -chrV 172080 172647 HC_gene_2313_tx_11 14 + 172080 172647 . 1 568 0 -chrV 172080 172648 HC_gene_2313_tx_12 1 + 172080 172648 . 1 569 0 -chrV 172080 172649 HC_gene_2313_tx_13 4 + 172080 172649 . 1 570 0 -chrV 172080 172650 HC_gene_2313_tx_14 3 + 172080 172650 . 1 571 0 -chrV 172080 172651 HC_gene_2313_tx_15 7 + 172080 172651 . 1 572 0 -chrV 172080 172652 HC_gene_2313_tx_16 16 + 172080 172652 . 1 573 0 -chrV 172080 172653 HC_gene_2313_tx_17 9 + 172080 172653 . 1 574 0 -chrV 172080 172654 HC_gene_2313_tx_18 4 + 172080 172654 . 1 575 0 -chrV 172080 172655 HC_gene_2313_tx_19 2 + 172080 172655 . 1 576 0 -chrV 172080 172656 HC_gene_2313_tx_20 5 + 172080 172656 . 1 577 0 -chrV 172080 172657 HC_gene_2313_tx_21 59 + 172080 172657 . 1 578 0 -chrV 172080 172658 HC_gene_2313_tx_22 42 + 172080 172658 . 1 579 0 -chrV 172080 172659 HC_gene_2313_tx_23 15 + 172080 172659 . 1 580 0 -chrV 172080 172660 HC_gene_2313_tx_24 8 + 172080 172660 . 1 581 0 -chrV 172080 172661 HC_gene_2313_tx_25 2 + 172080 172661 . 1 582 0 -chrV 172080 172662 HC_gene_2313_tx_26 3 + 172080 172662 . 1 583 0 -chrV 172080 172664 HC_gene_2313_tx_27 13 + 172080 172664 . 1 585 0 -chrV 172080 172665 HC_gene_2313_tx_28 16 + 172080 172665 . 1 586 0 -chrV 172080 172666 HC_gene_2313_tx_29 2 + 172080 172666 . 1 587 0 -chrV 172080 172667 HC_gene_2313_tx_30 55 + 172080 172667 . 1 588 0 -chrV 172080 172668 HC_gene_2313_tx_31 2 + 172080 172668 . 1 589 0 -chrV 172080 172669 HC_gene_2313_tx_32 10 + 172080 172669 . 1 590 0 -chrV 172080 172670 HC_gene_2313_tx_33 15 + 172080 172670 . 1 591 0 -chrV 172080 172671 HC_gene_2313_tx_34 15 + 172080 172671 . 1 592 0 -chrV 172080 172672 HC_gene_2313_tx_35 3 + 172080 172672 . 1 593 0 -chrV 172080 172673 HC_gene_2313_tx_36 42 + 172080 172673 . 1 594 0 -chrV 172080 172674 HC_gene_2313_tx_37 1 + 172080 172674 . 1 595 0 -chrV 172080 172676 HC_gene_2313_tx_38 1 + 172080 172676 . 1 597 0 -chrV 172080 172677 HC_gene_2313_tx_39 2 + 172080 172677 . 1 598 0 -chrV 172080 172678 HC_gene_2313_tx_40 11 + 172080 172678 . 1 599 0 -chrV 172080 172684 HC_gene_2313_tx_41 1 + 172080 172684 . 1 605 0 -chrV 172080 172685 HC_gene_2313_tx_42 2 + 172080 172685 . 1 606 0 -chrV 172080 172689 HC_gene_2313_tx_43 1 + 172080 172689 . 1 610 0 -chrV 172080 172693 HC_gene_2313_tx_44 1 + 172080 172693 . 1 614 0 -chrV 172080 172696 HC_gene_2313_tx_45 2 + 172080 172696 . 1 617 0 -chrV 172080 172703 HC_gene_2313_tx_46 1 + 172080 172703 . 1 624 0 -chrV 172080 172706 HC_gene_2313_tx_47 1 + 172080 172706 . 1 627 0 -chrV 172080 172710 HC_gene_2313_tx_48 1 + 172080 172710 . 1 631 0 -chrV 172080 172716 HC_gene_2313_tx_49 1 + 172080 172716 . 1 637 0 -chrV 172080 172721 HC_gene_2313_tx_50 1 + 172080 172721 . 1 642 0 -chrV 172080 172724 HC_gene_2313_tx_51 1 + 172080 172724 . 1 645 0 -chrV 172080 172732 HC_gene_2313_tx_52 3 + 172080 172732 . 1 653 0 -chrV 172080 172733 HC_gene_2313_tx_53 1 + 172080 172733 . 1 654 0 -chrV 172080 172736 HC_gene_2313_tx_54 1 + 172080 172736 . 1 657 0 -chrV 172080 172743 HC_gene_2313_tx_55 1 + 172080 172743 . 1 664 0 -chrV 172195 172638 HC_gene_2313_tx_56 1 + 172195 172638 . 1 444 0 -chrV 172195 172640 HC_gene_2313_tx_57 1 + 172195 172640 . 1 446 0 -chrV 172195 172641 HC_gene_2313_tx_58 1 + 172195 172641 . 1 447 0 -chrV 172195 172642 HC_gene_2313_tx_59 1 + 172195 172642 . 1 448 0 -chrV 172195 172644 HC_gene_2313_tx_60 4 + 172195 172644 . 1 450 0 -chrV 172195 172645 HC_gene_2313_tx_61 28 + 172195 172645 . 1 451 0 -chrV 172195 172646 HC_gene_2313_tx_62 2 + 172195 172646 . 1 452 0 -chrV 172195 172649 HC_gene_2313_tx_63 2 + 172195 172649 . 1 455 0 -chrV 172195 172654 HC_gene_2313_tx_64 2 + 172195 172654 . 1 460 0 -chrV 172195 172657 HC_gene_2313_tx_65 4 + 172195 172657 . 1 463 0 -chrV 172195 172658 HC_gene_2313_tx_66 2 + 172195 172658 . 1 464 0 -chrV 172195 172659 HC_gene_2313_tx_67 2 + 172195 172659 . 1 465 0 -chrV 172195 172665 HC_gene_2313_tx_68 2 + 172195 172665 . 1 471 0 -chrV 172195 172667 HC_gene_2313_tx_69 8 + 172195 172667 . 1 473 0 -chrV 172195 172669 HC_gene_2313_tx_70 4 + 172195 172669 . 1 475 0 -chrV 172195 172672 HC_gene_2313_tx_71 2 + 172195 172672 . 1 478 0 -chrV 172195 172673 HC_gene_2313_tx_72 4 + 172195 172673 . 1 479 0 -chrV 172195 172675 HC_gene_2313_tx_73 1 + 172195 172675 . 1 481 0 -chrV 172195 172676 HC_gene_2313_tx_74 2 + 172195 172676 . 1 482 0 -chrV 172195 172678 HC_gene_2313_tx_75 4 + 172195 172678 . 1 484 0 -chrV 172195 172697 HC_gene_2313_tx_76 1 + 172195 172697 . 1 503 0 -chrV 172195 172705 HC_gene_2313_tx_77 1 + 172195 172705 . 1 511 0 -chrV 172195 172735 HC_gene_2313_tx_78 1 + 172195 172735 . 1 541 0 -chrV 172327 172638 HC_gene_2313_tx_79 2 + 172327 172638 . 1 312 0 -chrV 172327 172639 HC_gene_2313_tx_80 5 + 172327 172639 . 1 313 0 -chrV 172327 172641 HC_gene_2313_tx_81 3 + 172327 172641 . 1 315 0 -chrV 172327 172644 HC_gene_2313_tx_82 8 + 172327 172644 . 1 318 0 -chrV 172327 172645 HC_gene_2313_tx_83 48 + 172327 172645 . 1 319 0 -chrV 172327 172646 HC_gene_2313_tx_84 1 + 172327 172646 . 1 320 0 -chrV 172327 172647 HC_gene_2313_tx_85 1 + 172327 172647 . 1 321 0 -chrV 172327 172648 HC_gene_2313_tx_86 1 + 172327 172648 . 1 322 0 -chrV 172327 172650 HC_gene_2313_tx_87 1 + 172327 172650 . 1 324 0 -chrV 172327 172651 HC_gene_2313_tx_88 1 + 172327 172651 . 1 325 0 -chrV 172327 172652 HC_gene_2313_tx_89 1 + 172327 172652 . 1 326 0 -chrV 172327 172654 HC_gene_2313_tx_90 1 + 172327 172654 . 1 328 0 -chrV 172327 172656 HC_gene_2313_tx_91 1 + 172327 172656 . 1 330 0 -chrV 172327 172657 HC_gene_2313_tx_92 9 + 172327 172657 . 1 331 0 -chrV 172327 172658 HC_gene_2313_tx_93 3 + 172327 172658 . 1 332 0 -chrV 172327 172659 HC_gene_2313_tx_94 3 + 172327 172659 . 1 333 0 -chrV 172327 172660 HC_gene_2313_tx_95 1 + 172327 172660 . 1 334 0 -chrV 172327 172663 HC_gene_2313_tx_96 1 + 172327 172663 . 1 337 0 -chrV 172327 172664 HC_gene_2313_tx_97 1 + 172327 172664 . 1 338 0 -chrV 172327 172667 HC_gene_2313_tx_98 8 + 172327 172667 . 1 341 0 -chrV 172327 172672 HC_gene_2313_tx_99 1 + 172327 172672 . 1 346 0 -chrV 172327 172673 HC_gene_2313_tx_100 4 + 172327 172673 . 1 347 0 -chrV 172327 172678 HC_gene_2313_tx_101 2 + 172327 172678 . 1 352 0 -chrV 172327 172682 HC_gene_2313_tx_102 1 + 172327 172682 . 1 356 0 -chrV 172327 172686 HC_gene_2313_tx_103 1 + 172327 172686 . 1 360 0 -chrV 172505 173037 HC_gene_2556_tx_1 2 - 172505 173037 . 1 533 0 -chrV 172505 173346 HC_gene_2556_tx_3 15 - 172505 173346 . 1 842 0 -chrV 172573 173037 HC_gene_2556_tx_2 11 - 172573 173037 . 1 465 0 -chrV 172573 173346 HC_gene_2556_tx_4 78 - 172573 173346 . 1 774 0 -chrV 173498 173721 HC_gene_2314_tx_1 16 + 173498 173721 . 1 224 0 -chrV 173768 174641 LC_gene_2557_tx_1 1 - 173768 174641 . 1 874 0 -chrV 175193 176090 HC_gene_2315_tx_1 121 + 175193 176090 . 1 898 0 -chrV 175193 176090 HC_gene_2315_tx_2 1 + 175193 176090 . 2 83,549 0,349 -chrV 175193 176090 HC_gene_2315_tx_3 1 + 175193 176090 . 2 512,338 0,560 -chrV 175193 176090 HC_gene_2315_tx_4 1 + 175193 176090 . 2 549,313 0,585 -chrV 175193 176168 HC_gene_2315_tx_5 162 + 175193 176168 . 1 976 0 -chrV 175193 176168 HC_gene_2315_tx_6 1 + 175193 176168 . 2 269,627 0,349 -chrV 175193 176168 HC_gene_2315_tx_7 1 + 175193 176168 . 2 440,471 0,505 -chrV 175193 176168 HC_gene_2315_tx_8 1 + 175193 176168 . 2 97,655 0,321 -chrV 175193 176168 HC_gene_2315_tx_9 1 + 175193 176168 . 2 248,655 0,321 -chrV 175579 176090 HC_gene_2315_tx_10 9 + 175579 176090 . 1 512 0 -chrV 175579 176168 HC_gene_2315_tx_11 11 + 175579 176168 . 1 590 0 -chrV 175579 176168 HC_gene_2315_tx_12 1 + 175579 176168 . 2 159,340 0,250 -chrV 176069 177592 MC_gene_2558_tx_1 1 - 176069 177592 . 1 1524 0 -chrV 177773 178597 HC_gene_2316_tx_1 481 + 177773 178597 . 1 825 0 -chrV 177976 178597 HC_gene_2316_tx_2 39 + 177976 178597 . 1 622 0 -chrV 178207 178578 MC_gene_2559_tx_1 1 - 178207 178578 . 1 372 0 -chrV 178800 182395 HC_gene_2317_tx_1 5 + 178800 182395 . 1 3596 0 -chrV 182568 184332 HC_gene_2318_tx_1 22 + 182568 184332 . 1 1765 0 -chrV 182747 184332 HC_gene_2318_tx_2 2 + 182747 184332 . 1 1586 0 -chrV 184300 186343 LC_gene_2560_tx_1 1 - 184300 186343 . 1 2044 0 -chrV 184518 187033 HC_gene_2319_tx_1 3 + 184518 187033 . 1 2516 0 -chrV 184518 187033 HC_gene_2319_tx_2 1 + 184518 187033 . 3 1193,1007,162 0,1309,2354 -chrV 186495 187033 HC_gene_2319_tx_3 1 + 186495 187033 . 1 539 0 -chrV 186555 187033 HC_gene_2319_tx_4 5 + 186555 187033 . 1 479 0 -chrV 186939 187512 HC_gene_2561_tx_1 3 - 186939 187512 . 1 574 0 -chrV 186939 187573 HC_gene_2561_tx_2 2 - 186939 187573 . 1 635 0 -chrV 186939 188075 HC_gene_2561_tx_3 10 - 186939 188075 . 1 1137 0 -chrV 187357 188075 HC_gene_2561_tx_4 15 - 187357 188075 . 1 719 0 -chrV 188264 189461 HC_gene_2320_tx_1 43 + 188264 189461 . 1 1198 0 -chrV 188264 189461 HC_gene_2320_tx_2 1 + 188264 189461 . 2 404,734 0,464 -chrV 188751 189461 HC_gene_2320_tx_3 8 + 188751 189461 . 1 711 0 -chrV 189313 191550 HC_gene_2562_tx_1 1 - 189313 191550 . 1 2238 0 -chrV 189313 191870 HC_gene_2562_tx_2 6 - 189313 191870 . 1 2558 0 -chrV 189313 191870 HC_gene_2562_tx_3 1 - 189313 191870 . 2 558,1861 0,697 -chrV 191884 192621 HC_gene_2563_tx_1 1 - 191884 192621 . 1 738 0 -chrV 191884 192630 HC_gene_2563_tx_2 1 - 191884 192630 . 1 747 0 -chrV 191884 192667 HC_gene_2563_tx_3 1 - 191884 192667 . 1 784 0 -chrV 191884 192669 HC_gene_2563_tx_4 1 - 191884 192669 . 1 786 0 -chrV 191884 192672 HC_gene_2563_tx_5 1 - 191884 192672 . 1 789 0 -chrV 191884 192678 HC_gene_2563_tx_6 1 - 191884 192678 . 1 795 0 -chrV 191884 192680 HC_gene_2563_tx_7 25 - 191884 192680 . 1 797 0 -chrV 192401 192691 HC_gene_2321_tx_1 42 + 192401 192691 . 1 291 0 -chrV 192845 194323 HC_gene_2322_tx_1 53 + 192845 194323 . 1 1479 0 -chrV 192845 194323 HC_gene_2322_tx_2 1 + 192845 194323 . 2 744,420 0,1059 -chrV 192845 194323 HC_gene_2322_tx_3 1 + 192845 194323 . 2 432,280 0,1199 -chrV 192845 194323 HC_gene_2322_tx_4 1 + 192845 194323 . 2 471,939 0,540 -chrV 193189 194323 HC_gene_2322_tx_5 7 + 193189 194323 . 1 1135 0 -chrV 194212 194593 HC_gene_2564_tx_1 607 - 194212 194593 . 1 382 0 -chrV 194212 194808 HC_gene_2564_tx_2 5 - 194212 194808 . 1 597 0 -chrV 194212 194891 HC_gene_2564_tx_3 9 - 194212 194891 . 1 680 0 -chrV 195157 196693 HC_gene_2323_tx_1 1 + 195157 196693 . 2 665,759 0,778 -chrV 195170 196693 HC_gene_2323_tx_2 24 + 195170 196693 . 1 1524 0 -chrV 195170 196693 HC_gene_2323_tx_3 1 + 195170 196693 . 2 1005,453 0,1071 -chrV 195170 196693 HC_gene_2323_tx_4 1 + 195170 196693 . 2 23,1349 0,175 -chrV 195330 196693 HC_gene_2323_tx_5 10 + 195330 196693 . 1 1364 0 -chrV 195820 196693 HC_gene_2323_tx_6 5 + 195820 196693 . 1 874 0 -chrV 196240 196654 LC_gene_2565_tx_1 1 - 196240 196654 . 1 415 0 -chrV 196332 196693 HC_gene_2323_tx_7 7 + 196332 196693 . 1 362 0 -chrV 196936 198646 HC_gene_2324_tx_1 89 + 196936 198646 . 1 1711 0 -chrV 196936 198646 HC_gene_2324_tx_2 1 + 196936 198646 . 2 1000,605 0,1106 -chrV 196936 198646 HC_gene_2324_tx_3 1 + 196936 198646 . 2 884,777 0,934 -chrV 197112 198646 HC_gene_2324_tx_4 6 + 197112 198646 . 1 1535 0 -chrV 197265 198646 HC_gene_2324_tx_5 16 + 197265 198646 . 1 1382 0 -chrV 197665 198646 HC_gene_2324_tx_6 12 + 197665 198646 . 1 982 0 -chrV 198776 200978 HC_gene_2325_tx_1 8 + 198776 200978 . 1 2203 0 -chrV 198776 200978 HC_gene_2325_tx_2 1 + 198776 200978 . 2 2094,63 0,2140 -chrV 198776 200978 HC_gene_2325_tx_3 1 + 198776 200978 . 2 826,1293 0,910 -chrV 201050 201995 HC_gene_2326_tx_1 3 + 201050 201995 . 1 946 0 -chrV 201050 201999 HC_gene_2326_tx_2 4 + 201050 201999 . 1 950 0 -chrV 201050 202001 HC_gene_2326_tx_3 2 + 201050 202001 . 1 952 0 -chrV 201050 202002 HC_gene_2326_tx_4 1 + 201050 202002 . 1 953 0 -chrV 201050 202003 HC_gene_2326_tx_5 4 + 201050 202003 . 1 954 0 -chrV 201050 202006 HC_gene_2326_tx_6 18 + 201050 202006 . 1 957 0 -chrV 201050 202007 HC_gene_2326_tx_7 2 + 201050 202007 . 1 958 0 -chrV 201050 202008 HC_gene_2326_tx_8 7 + 201050 202008 . 1 959 0 -chrV 201050 202009 HC_gene_2326_tx_9 2 + 201050 202009 . 1 960 0 -chrV 201050 202010 HC_gene_2326_tx_10 3 + 201050 202010 . 1 961 0 -chrV 201050 202011 HC_gene_2326_tx_11 1 + 201050 202011 . 1 962 0 -chrV 201050 202012 HC_gene_2326_tx_12 1 + 201050 202012 . 1 963 0 -chrV 201050 202017 HC_gene_2326_tx_13 11 + 201050 202017 . 1 968 0 -chrV 201050 202151 HC_gene_2326_tx_14 49 + 201050 202151 . 1 1102 0 -chrV 201050 202151 HC_gene_2326_tx_15 1 + 201050 202151 . 2 372,664 0,438 -chrV 201051 202151 HC_gene_2326_tx_16 1 + 201051 202151 . 1 1101 0 -chrV 201628 201995 HC_gene_2326_tx_17 1 + 201628 201995 . 1 368 0 -chrV 201628 201996 HC_gene_2326_tx_18 1 + 201628 201996 . 1 369 0 -chrV 201628 202002 HC_gene_2326_tx_19 1 + 201628 202002 . 1 375 0 -chrV 201628 202003 HC_gene_2326_tx_20 1 + 201628 202003 . 1 376 0 -chrV 201628 202006 HC_gene_2326_tx_21 5 + 201628 202006 . 1 379 0 -chrV 201628 202011 HC_gene_2326_tx_22 1 + 201628 202011 . 1 384 0 -chrV 201628 202012 HC_gene_2326_tx_23 1 + 201628 202012 . 1 385 0 -chrV 201628 202017 HC_gene_2326_tx_24 2 + 201628 202017 . 1 390 0 -chrV 201628 202151 HC_gene_2326_tx_25 12 + 201628 202151 . 1 524 0 -chrV 201662 202151 HC_gene_2326_tx_26 1 + 201662 202151 . 1 490 0 -chrV 201927 202607 MC_gene_2566_tx_1 1 - 201927 202607 . 1 681 0 -chrV 202159 205022 HC_gene_2327_tx_1 3 + 202159 205022 . 1 2864 0 -chrV 202159 205077 HC_gene_2327_tx_2 2 + 202159 205077 . 1 2919 0 -chrV 202839 205022 HC_gene_2327_tx_3 4 + 202839 205022 . 1 2184 0 -chrV 202881 204598 HC_gene_2567_tx_1 1 - 202881 204598 . 1 1718 0 -chrV 202988 204598 HC_gene_2567_tx_2 1 - 202988 204598 . 1 1611 0 -chrV 204432 205022 HC_gene_2327_tx_4 5 + 204432 205022 . 1 591 0 -chrV 204432 205077 HC_gene_2327_tx_5 1 + 204432 205077 . 1 646 0 -chrV 204647 204961 LC_gene_2568_tx_1 1 - 204647 204961 . 1 315 0 -chrV 204785 205022 HC_gene_2327_tx_6 12 + 204785 205022 . 1 238 0 -chrV 204785 205077 HC_gene_2327_tx_7 10 + 204785 205077 . 1 293 0 -chrV 204785 207016 HC_gene_2327_tx_8 1 + 204785 207016 . 1 2232 0 -chrV 204785 207129 HC_gene_2327_tx_9 1 + 204785 207129 . 1 2345 0 -chrV 205206 207016 HC_gene_2327_tx_10 19 + 205206 207016 . 1 1811 0 -chrV 205206 207129 HC_gene_2327_tx_11 135 + 205206 207129 . 1 1924 0 -chrV 205206 207129 HC_gene_2327_tx_12 1 + 205206 207129 . 2 1127,729 0,1195 -chrV 205206 207129 HC_gene_2327_tx_13 1 + 205206 207129 . 2 559,1137 0,787 -chrV 205206 207129 HC_gene_2327_tx_14 1 + 205206 207129 . 2 924,928 0,996 -chrV 205206 207129 HC_gene_2327_tx_15 1 + 205206 207129 . 2 445,1297 0,627 -chrV 205206 207129 HC_gene_2327_tx_16 1 + 205206 207129 . 2 1048,776 0,1148 -chrV 205206 207129 HC_gene_2327_tx_17 1 + 205206 207129 . 3 189,556,1067 0,239,857 -chrV 205206 207129 HC_gene_2327_tx_18 1 + 205206 207129 . 2 808,1009 0,915 -chrV 205206 207129 HC_gene_2327_tx_19 1 + 205206 207129 . 2 225,441 0,1483 -chrV 205470 207016 HC_gene_2327_tx_20 1 + 205470 207016 . 1 1547 0 -chrV 205470 207129 HC_gene_2327_tx_21 17 + 205470 207129 . 1 1660 0 -chrV 205793 207016 HC_gene_2327_tx_22 4 + 205793 207016 . 1 1224 0 -chrV 205793 207129 HC_gene_2327_tx_23 18 + 205793 207129 . 1 1337 0 -chrV 206666 207016 HC_gene_2327_tx_24 5 + 206666 207016 . 1 351 0 -chrV 206666 207129 HC_gene_2327_tx_25 38 + 206666 207129 . 1 464 0 -chrV 207363 207618 MC_gene_2328_tx_1 1 + 207363 207618 . 1 256 0 -chrV 207514 208021 HC_gene_2569_tx_1 14 - 207514 208021 . 1 508 0 -chrV 207514 208084 HC_gene_2569_tx_2 20 - 207514 208084 . 1 571 0 -chrV 207514 208193 HC_gene_2569_tx_3 29 - 207514 208193 . 1 680 0 -chrV 207514 208384 HC_gene_2569_tx_4 16 - 207514 208384 . 1 871 0 -chrV 207514 208485 HC_gene_2569_tx_5 204 - 207514 208485 . 1 972 0 -chrV 208730 209484 HC_gene_2570_tx_1 9 - 208730 209484 . 1 755 0 -chrV 208730 209650 HC_gene_2570_tx_2 5 - 208730 209650 . 1 921 0 -chrV 208730 209968 HC_gene_2570_tx_4 5 - 208730 209968 . 1 1239 0 -chrV 208730 210305 HC_gene_2570_tx_6 34 - 208730 210305 . 1 1576 0 -chrV 208730 210305 HC_gene_2570_tx_7 1 - 208730 210305 . 2 249,1245 0,331 -chrV 208914 209484 HC_gene_2570_tx_9 3 - 208914 209484 . 1 571 0 -chrV 208914 209650 HC_gene_2570_tx_3 2 - 208914 209650 . 1 737 0 -chrV 208914 209968 HC_gene_2570_tx_5 1 - 208914 209968 . 1 1055 0 -chrV 208914 210305 HC_gene_2570_tx_8 20 - 208914 210305 . 1 1392 0 -chrV 210479 212466 MC_gene_2329_tx_1 1 + 210479 212466 . 1 1988 0 -chrV 210633 211502 HC_gene_2571_tx_1 1 - 210633 211502 . 1 870 0 -chrV 210633 211637 HC_gene_2571_tx_2 11 - 210633 211637 . 1 1005 0 -chrV 210633 211906 HC_gene_2571_tx_3 10 - 210633 211906 . 1 1274 0 -chrV 212399 213295 MC_gene_2330_tx_1 1 + 212399 213295 . 1 897 0 -chrV 212482 212884 HC_gene_2572_tx_1 20 - 212482 212884 . 1 403 0 -chrV 212482 213022 HC_gene_2572_tx_2 11 - 212482 213022 . 1 541 0 -chrV 212482 213115 HC_gene_2572_tx_3 15 - 212482 213115 . 1 634 0 -chrV 212482 213244 HC_gene_2572_tx_4 115 - 212482 213244 . 1 763 0 -chrV 213428 214025 HC_gene_2331_tx_1 555 + 213428 214025 . 1 598 0 -chrV 213428 214025 HC_gene_2331_tx_2 1 + 213428 214025 . 2 84,357 0,241 -chrV 213428 214025 HC_gene_2331_tx_3 1 + 213428 214025 . 2 484,61 0,537 -chrV 213428 214025 HC_gene_2331_tx_4 1 + 213428 214025 . 2 484,51 0,547 -chrV 213428 214025 HC_gene_2331_tx_5 1 + 213428 214025 . 2 61,453 0,145 -chrV 213428 214025 HC_gene_2331_tx_6 1 + 213428 214025 . 2 82,398 0,200 -chrV 213428 214025 HC_gene_2331_tx_7 1 + 213428 214025 . 2 436,55 0,543 -chrV 213428 214025 HC_gene_2331_tx_8 1 + 213428 214025 . 2 301,239 0,359 -chrV 213428 214445 HC_gene_2331_tx_9 1 + 213428 214445 . 2 592,360 0,658 -chrV 213428 214445 HC_gene_2331_tx_10 1 + 213428 214445 . 1 1018 0 -chrV 213778 214159 HC_gene_2573_tx_1 1 - 213778 214159 . 1 382 0 -chrV 213778 214382 HC_gene_2573_tx_2 2 - 213778 214382 . 1 605 0 -chrV 213778 214606 HC_gene_2573_tx_3 1 - 213778 214606 . 1 829 0 -chrV 213778 214782 HC_gene_2573_tx_4 3 - 213778 214782 . 1 1005 0 -chrV 213910 214159 HC_gene_2573_tx_18 29 - 213910 214159 . 1 250 0 -chrV 213910 214330 HC_gene_2573_tx_5 19 - 213910 214330 . 1 421 0 -chrV 213910 214382 HC_gene_2573_tx_6 41 - 213910 214382 . 1 473 0 -chrV 213910 214489 HC_gene_2573_tx_7 41 - 213910 214489 . 1 580 0 -chrV 213910 214606 HC_gene_2573_tx_8 37 - 213910 214606 . 1 697 0 -chrV 213910 214679 HC_gene_2573_tx_9 11 - 213910 214679 . 1 770 0 -chrV 213910 214782 HC_gene_2573_tx_10 277 - 213910 214782 . 1 873 0 -chrV 213910 214782 HC_gene_2573_tx_11 1 - 213910 214782 . 2 272,513 0,360 -chrV 213910 214782 HC_gene_2573_tx_12 1 - 213910 214782 . 2 460,291 0,582 -chrV 213910 214782 HC_gene_2573_tx_13 1 - 213910 214782 . 2 46,766 0,107 -chrV 213910 214782 HC_gene_2573_tx_14 1 - 213910 214782 . 2 272,521 0,352 -chrV 213910 214782 HC_gene_2573_tx_15 1 - 213910 214782 . 2 400,424 0,449 -chrV 213910 214782 HC_gene_2573_tx_16 1 - 213910 214782 . 2 63,708 0,165 -chrV 213910 214782 HC_gene_2573_tx_17 1 - 213910 214782 . 2 528,240 0,633 -chrV 215014 217957 HC_gene_2332_tx_1 5 + 215014 217957 . 1 2944 0 -chrV 217887 221490 HC_gene_2574_tx_1 3 - 217887 221490 . 1 3604 0 -chrV 221806 222656 HC_gene_2333_tx_1 43 + 221806 222656 . 1 851 0 -chrV 221806 223214 HC_gene_2333_tx_5 4 + 221806 223214 . 1 1409 0 -chrV 221806 223390 HC_gene_2333_tx_6 1 + 221806 223390 . 1 1585 0 -chrV 221829 222656 HC_gene_2333_tx_2 1 + 221829 222656 . 1 828 0 -chrV 221849 222656 HC_gene_2333_tx_3 1 + 221849 222656 . 1 808 0 -chrV 221856 222656 HC_gene_2333_tx_4 1 + 221856 222656 . 1 801 0 -chrV 222563 223214 HC_gene_2333_tx_7 93 + 222563 223214 . 1 652 0 -chrV 222563 223390 HC_gene_2333_tx_8 42 + 222563 223390 . 1 828 0 -chrV 222563 223390 HC_gene_2333_tx_9 1 + 222563 223390 . 2 305,464 0,364 -chrV 222713 223119 LC_gene_2575_tx_1 1 - 222713 223119 . 1 407 0 -chrV 223259 223567 HC_gene_2576_tx_1 50 - 223259 223567 . 1 309 0 -chrV 223259 223677 HC_gene_2576_tx_2 67 - 223259 223677 . 1 419 0 -chrV 223259 223818 HC_gene_2576_tx_3 39 - 223259 223818 . 1 560 0 -chrV 223259 224101 HC_gene_2576_tx_4 38 - 223259 224101 . 1 843 0 -chrV 223259 224101 HC_gene_2576_tx_5 1 - 223259 224101 . 2 271,229 0,614 -chrV 223259 224508 HC_gene_2576_tx_6 15 - 223259 224508 . 1 1250 0 -chrV 223259 224565 HC_gene_2576_tx_7 14 - 223259 224565 . 1 1307 0 -chrV 223259 224879 HC_gene_2576_tx_8 11 - 223259 224879 . 1 1621 0 -chrV 223259 225069 HC_gene_2576_tx_9 7 - 223259 225069 . 1 1811 0 -chrV 223259 225069 HC_gene_2576_tx_10 1 - 223259 225069 . 2 580,1037 0,774 -chrV 223259 225142 HC_gene_2576_tx_11 13 - 223259 225142 . 1 1884 0 -chrV 223259 225142 HC_gene_2576_tx_12 1 - 223259 225142 . 2 761,1071 0,813 -chrV 223259 225233 HC_gene_2576_tx_13 172 - 223259 225233 . 1 1975 0 -chrV 223259 225233 HC_gene_2576_tx_14 1 - 223259 225233 . 2 907,981 0,994 -chrV 223259 225233 HC_gene_2576_tx_15 1 - 223259 225233 . 2 907,1000 0,975 -chrV 223259 225233 HC_gene_2576_tx_16 1 - 223259 225233 . 2 674,1154 0,821 -chrV 223259 225233 HC_gene_2576_tx_17 1 - 223259 225233 . 2 925,973 0,1002 -chrV 223259 225233 HC_gene_2576_tx_18 1 - 223259 225233 . 2 872,934 0,1041 -chrV 223259 225233 HC_gene_2576_tx_19 1 - 223259 225233 . 2 564,1283 0,692 -chrV 223259 225233 HC_gene_2576_tx_20 1 - 223259 225233 . 2 874,1039 0,936 -chrV 223259 225233 HC_gene_2576_tx_21 1 - 223259 225233 . 2 770,1154 0,821 -chrV 223259 225233 HC_gene_2576_tx_22 1 - 223259 225233 . 2 887,993 0,982 -chrV 223259 225233 HC_gene_2576_tx_23 1 - 223259 225233 . 2 940,985 0,990 -chrV 223259 225233 HC_gene_2576_tx_24 1 - 223259 225233 . 2 336,1581 0,394 -chrV 223259 225233 HC_gene_2576_tx_25 1 - 223259 225233 . 2 816,1073 0,902 -chrV 223259 225233 HC_gene_2576_tx_26 1 - 223259 225233 . 2 907,999 0,976 -chrV 223259 225233 HC_gene_2576_tx_27 1 - 223259 225233 . 2 950,947 0,1028 -chrV 223259 225233 HC_gene_2576_tx_28 1 - 223259 225233 . 2 953,934 0,1041 -chrV 223259 225233 HC_gene_2576_tx_29 1 - 223259 225233 . 2 674,1255 0,720 -chrV 223259 225233 HC_gene_2576_tx_30 1 - 223259 225233 . 2 874,997 0,978 -chrV 223259 225233 HC_gene_2576_tx_31 1 - 223259 225233 . 2 907,1005 0,970 -chrV 223259 225233 HC_gene_2576_tx_32 1 - 223259 225233 . 2 887,968 0,1007 -chrV 223259 225233 HC_gene_2576_tx_33 1 - 223259 225233 . 2 1029,830 0,1145 -chrV 223259 225233 HC_gene_2576_tx_34 1 - 223259 225233 . 2 907,954 0,1021 -chrV 223259 225233 HC_gene_2576_tx_35 1 - 223259 225233 . 2 917,998 0,977 -chrV 225703 228263 HC_gene_2577_tx_1 1 - 225703 228263 . 1 2561 0 -chrV 225866 227075 HC_gene_2334_tx_1 25 + 225866 227075 . 1 1210 0 -chrV 225866 227204 HC_gene_2334_tx_2 3 + 225866 227204 . 1 1339 0 -chrV 226238 228263 HC_gene_2577_tx_2 1 - 226238 228263 . 1 2026 0 -chrV 226335 228263 HC_gene_2577_tx_3 1 - 226335 228263 . 1 1929 0 -chrV 226543 227075 HC_gene_2334_tx_3 2 + 226543 227075 . 1 533 0 -chrV 226613 227075 HC_gene_2334_tx_4 5 + 226613 227075 . 1 463 0 -chrV 226996 228263 HC_gene_2577_tx_4 7 - 226996 228263 . 1 1268 0 -chrV 228333 229498 HC_gene_2578_tx_1 8 - 228333 229498 . 1 1166 0 -chrV 228378 229376 HC_gene_2335_tx_1 1 + 228378 229376 . 1 999 0 -chrV 228632 229577 HC_gene_2336_tx_1 1 + 228632 229577 . 1 946 0 -chrV 229712 232249 HC_gene_2337_tx_1 5 + 229712 232249 . 1 2538 0 -chrV 229712 232249 HC_gene_2337_tx_2 1 + 229712 232249 . 2 123,2256 0,282 -chrV 229712 232249 HC_gene_2337_tx_3 1 + 229712 232249 . 2 134,2058 0,480 -chrV 230245 232249 HC_gene_2337_tx_4 1 + 230245 232249 . 1 2005 0 -chrV 232379 234904 HC_gene_2338_tx_1 1 + 232379 234904 . 1 2526 0 -chrV 232395 234904 HC_gene_2338_tx_2 5 + 232395 234904 . 1 2510 0 -chrV 232395 234904 HC_gene_2338_tx_3 1 + 232395 234904 . 2 805,1648 0,862 -chrV 232395 234904 HC_gene_2338_tx_4 1 + 232395 234904 . 2 1267,1104 0,1406 -chrV 233886 234904 HC_gene_2338_tx_5 2 + 233886 234904 . 1 1019 0 -chrV 234906 235655 HC_gene_2339_tx_1 154 + 234906 235655 . 1 750 0 -chrV 235473 236527 HC_gene_2579_tx_1 1 - 235473 236527 . 1 1055 0 -chrV 235473 237144 HC_gene_2579_tx_5 3 - 235473 237144 . 1 1672 0 -chrV 235534 235859 HC_gene_2579_tx_36 88 - 235534 235859 . 1 326 0 -chrV 235534 236067 HC_gene_2579_tx_37 76 - 235534 236067 . 1 534 0 -chrV 235534 236527 HC_gene_2579_tx_2 97 - 235534 236527 . 1 994 0 -chrV 235534 236527 HC_gene_2579_tx_3 1 - 235534 236527 . 2 703,222 0,772 -chrV 235534 236806 HC_gene_2579_tx_6 48 - 235534 236806 . 1 1273 0 -chrV 235534 236806 HC_gene_2579_tx_7 1 - 235534 236806 . 2 879,239 0,1034 -chrV 235534 237004 HC_gene_2579_tx_8 24 - 235534 237004 . 1 1471 0 -chrV 235534 237004 HC_gene_2579_tx_9 1 - 235534 237004 . 2 553,340 0,1131 -chrV 235534 237004 HC_gene_2579_tx_10 1 - 235534 237004 . 2 518,904 0,567 -chrV 235534 237144 HC_gene_2579_tx_11 597 - 235534 237144 . 1 1611 0 -chrV 235534 237144 HC_gene_2579_tx_12 1 - 235534 237144 . 2 518,1028 0,583 -chrV 235534 237144 HC_gene_2579_tx_13 1 - 235534 237144 . 2 579,971 0,640 -chrV 235534 237144 HC_gene_2579_tx_14 1 - 235534 237144 . 2 319,746 0,865 -chrV 235534 237144 HC_gene_2579_tx_15 1 - 235534 237144 . 2 635,860 0,751 -chrV 235534 237144 HC_gene_2579_tx_16 1 - 235534 237144 . 2 700,689 0,922 -chrV 235534 237144 HC_gene_2579_tx_17 1 - 235534 237144 . 2 728,819 0,792 -chrV 235534 237144 HC_gene_2579_tx_18 1 - 235534 237144 . 2 593,960 0,651 -chrV 235534 237144 HC_gene_2579_tx_19 1 - 235534 237144 . 2 81,1409 0,202 -chrV 235534 237144 HC_gene_2579_tx_20 1 - 235534 237144 . 2 604,923 0,688 -chrV 235534 237144 HC_gene_2579_tx_21 1 - 235534 237144 . 2 1242,101 0,1510 -chrV 235534 237144 HC_gene_2579_tx_22 1 - 235534 237144 . 2 576,955 0,656 -chrV 235534 237144 HC_gene_2579_tx_23 1 - 235534 237144 . 2 1238,71 0,1540 -chrV 235534 237144 HC_gene_2579_tx_24 1 - 235534 237144 . 2 721,801 0,810 -chrV 235534 237144 HC_gene_2579_tx_25 1 - 235534 237144 . 2 998,270 0,1341 -chrV 235534 237144 HC_gene_2579_tx_26 1 - 235534 237144 . 2 1466,56 0,1555 -chrV 235534 237144 HC_gene_2579_tx_27 1 - 235534 237144 . 2 741,795 0,816 -chrV 235634 237144 HC_gene_2579_tx_28 1 - 235634 237144 . 1 1511 0 -chrV 235635 237144 HC_gene_2579_tx_29 1 - 235635 237144 . 2 1047,206 0,1304 -chrV 235635 237144 HC_gene_2579_tx_30 2 - 235635 237144 . 1 1510 0 -chrV 235636 237144 HC_gene_2579_tx_31 1 - 235636 237144 . 1 1509 0 -chrV 235637 236527 HC_gene_2579_tx_4 1 - 235637 236527 . 1 891 0 -chrV 235637 237144 HC_gene_2579_tx_32 2 - 235637 237144 . 1 1508 0 -chrV 235641 237144 HC_gene_2579_tx_33 1 - 235641 237144 . 1 1504 0 -chrV 235643 237144 HC_gene_2579_tx_34 1 - 235643 237144 . 2 1207,179 0,1323 -chrV 235645 236067 HC_gene_2579_tx_38 1 - 235645 236067 . 1 423 0 -chrV 235647 237144 HC_gene_2579_tx_35 2 - 235647 237144 . 1 1498 0 -chrV 237464 238056 HC_gene_2580_tx_1 196 - 237464 238056 . 1 593 0 -chrV 237464 238056 HC_gene_2580_tx_2 1 - 237464 238056 . 2 450,58 0,535 -chrV 237464 239471 HC_gene_2580_tx_3 2 - 237464 239471 . 1 2008 0 -chrV 237479 238108 LC_gene_2340_tx_1 1 + 237479 238108 . 1 630 0 -chrV 238002 238056 HC_gene_2580_tx_4 1 - 238002 238056 . 1 55 0 -chrV 238002 239471 HC_gene_2580_tx_5 3 - 238002 239471 . 1 1470 0 -chrV 238086 239471 HC_gene_2580_tx_6 1 - 238086 239471 . 1 1386 0 -chrV 238648 239459 LC_gene_2341_tx_1 1 + 238648 239459 . 1 812 0 -chrV 239602 241698 MC_gene_2342_tx_1 1 + 239602 241698 . 1 2097 0 -chrV 239881 241067 HC_gene_2581_tx_1 4 - 239881 241067 . 1 1187 0 -chrV 239881 241502 HC_gene_2581_tx_2 1 - 239881 241502 . 1 1622 0 -chrV 239881 241761 HC_gene_2581_tx_3 1 - 239881 241761 . 2 517,981 0,900 -chrV 239881 241761 HC_gene_2581_tx_4 10 - 239881 241761 . 1 1881 0 -chrV 241793 242188 HC_gene_2582_tx_1 2 - 241793 242188 . 1 396 0 -chrV 241793 242425 HC_gene_2582_tx_2 4 - 241793 242425 . 1 633 0 -chrV 242491 243016 HC_gene_2343_tx_1 1 + 242491 243016 . 1 526 0 -chrV 242491 243218 HC_gene_2343_tx_2 3 + 242491 243218 . 1 728 0 -chrV 242491 243707 HC_gene_2343_tx_3 5 + 242491 243707 . 1 1217 0 -chrV 242768 243707 HC_gene_2343_tx_4 5 + 242768 243707 . 1 940 0 -chrV 243169 243707 HC_gene_2343_tx_5 19 + 243169 243707 . 1 539 0 -chrV 243750 246692 HC_gene_2583_tx_1 1 - 243750 246692 . 1 2943 0 -chrV 246603 248225 HC_gene_2584_tx_1 1 - 246603 248225 . 1 1623 0 -chrV 246859 247337 HC_gene_2584_tx_11 23 - 246859 247337 . 1 479 0 -chrV 246859 247462 HC_gene_2584_tx_12 24 - 246859 247462 . 1 604 0 -chrV 246859 247734 HC_gene_2584_tx_13 6 - 246859 247734 . 1 876 0 -chrV 246859 247788 HC_gene_2584_tx_14 17 - 246859 247788 . 1 930 0 -chrV 246859 247877 HC_gene_2584_tx_15 8 - 246859 247877 . 1 1019 0 -chrV 246859 247877 HC_gene_2584_tx_16 1 - 246859 247877 . 2 535,347 0,672 -chrV 246859 247940 HC_gene_2584_tx_17 6 - 246859 247940 . 1 1082 0 -chrV 246859 248225 HC_gene_2584_tx_2 87 - 246859 248225 . 1 1367 0 -chrV 246859 248225 HC_gene_2584_tx_3 1 - 246859 248225 . 2 481,801 0,566 -chrV 246859 248225 HC_gene_2584_tx_4 1 - 246859 248225 . 2 979,265 0,1102 -chrV 246859 248225 HC_gene_2584_tx_5 1 - 246859 248225 . 2 597,710 0,657 -chrV 246859 248225 HC_gene_2584_tx_6 1 - 246859 248225 . 2 495,819 0,548 -chrV 246859 248225 HC_gene_2584_tx_7 1 - 246859 248225 . 2 529,763 0,604 -chrV 246859 248225 HC_gene_2584_tx_8 1 - 246859 248225 . 2 582,695 0,672 -chrV 246859 248225 HC_gene_2584_tx_9 1 - 246859 248225 . 2 113,1200 0,167 -chrV 246859 248395 HC_gene_2584_tx_10 2 - 246859 248395 . 1 1537 0 -chrV 247146 247590 LC_gene_2344_tx_1 1 + 247146 247590 . 1 445 0 -chrV 248512 249556 MC_gene_2345_tx_1 1 + 248512 249556 . 1 1045 0 -chrV 248579 249783 HC_gene_2585_tx_1 26 - 248579 249783 . 1 1205 0 -chrV 248579 249852 HC_gene_2585_tx_2 1 - 248579 249852 . 1 1274 0 -chrV 249144 249783 HC_gene_2585_tx_3 3 - 249144 249783 . 1 640 0 -chrV 249144 249852 HC_gene_2585_tx_4 4 - 249144 249852 . 1 709 0 -chrV 249316 249783 HC_gene_2585_tx_5 2 - 249316 249783 . 1 468 0 -chrV 249316 249852 HC_gene_2585_tx_6 1 - 249316 249852 . 1 537 0 -chrV 250002 250414 MC_gene_2346_tx_1 1 + 250002 250414 . 1 413 0 -chrV 250633 251666 HC_gene_2347_tx_1 1 + 250633 251666 . 1 1034 0 -chrV 250636 251234 HC_gene_2347_tx_2 90 + 250636 251234 . 1 599 0 -chrV 250636 251331 HC_gene_2347_tx_3 3 + 250636 251331 . 1 696 0 -chrV 250636 251332 HC_gene_2347_tx_4 5 + 250636 251332 . 1 697 0 -chrV 250636 251333 HC_gene_2347_tx_5 10 + 250636 251333 . 1 698 0 -chrV 250636 251334 HC_gene_2347_tx_6 6 + 250636 251334 . 1 699 0 -chrV 250636 251335 HC_gene_2347_tx_7 1 + 250636 251335 . 1 700 0 -chrV 250636 251337 HC_gene_2347_tx_8 3 + 250636 251337 . 1 702 0 -chrV 250636 251339 HC_gene_2347_tx_9 1 + 250636 251339 . 1 704 0 -chrV 250636 251347 HC_gene_2347_tx_10 2 + 250636 251347 . 1 712 0 -chrV 250636 251348 HC_gene_2347_tx_11 1 + 250636 251348 . 1 713 0 -chrV 250636 251349 HC_gene_2347_tx_12 3 + 250636 251349 . 1 714 0 -chrV 250636 251351 HC_gene_2347_tx_13 2 + 250636 251351 . 1 716 0 -chrV 250636 251352 HC_gene_2347_tx_14 6 + 250636 251352 . 1 717 0 -chrV 250636 251356 HC_gene_2347_tx_15 1 + 250636 251356 . 1 721 0 -chrV 250636 251363 HC_gene_2347_tx_16 3 + 250636 251363 . 1 728 0 -chrV 250636 251366 HC_gene_2347_tx_17 1 + 250636 251366 . 1 731 0 -chrV 250636 251484 HC_gene_2347_tx_18 4 + 250636 251484 . 1 849 0 -chrV 250636 251666 HC_gene_2347_tx_19 6 + 250636 251666 . 1 1031 0 -chrV 250861 251421 MC_gene_2586_tx_1 1 - 250861 251421 . 1 561 0 -chrV 250971 251234 HC_gene_2347_tx_20 4 + 250971 251234 . 1 264 0 -chrV 250971 251336 HC_gene_2347_tx_21 1 + 250971 251336 . 1 366 0 -chrV 250971 251352 HC_gene_2347_tx_22 1 + 250971 251352 . 1 382 0 -chrV 250971 251484 HC_gene_2347_tx_23 1 + 250971 251484 . 1 514 0 -chrV 251709 253756 HC_gene_2348_tx_1 50 + 251709 253756 . 1 2048 0 -chrV 251709 253756 HC_gene_2348_tx_2 1 + 251709 253756 . 2 692,1264 0,784 -chrV 251709 253756 HC_gene_2348_tx_3 1 + 251709 253756 . 2 299,1684 0,364 -chrV 252133 253756 HC_gene_2348_tx_4 10 + 252133 253756 . 1 1624 0 -chrV 252228 253756 HC_gene_2348_tx_5 9 + 252228 253756 . 1 1529 0 -chrV 252228 253756 HC_gene_2348_tx_6 1 + 252228 253756 . 2 171,1260 0,269 -chrV 252290 253756 HC_gene_2348_tx_7 12 + 252290 253756 . 1 1467 0 -chrV 252644 253756 HC_gene_2348_tx_8 10 + 252644 253756 . 1 1113 0 -chrV 252644 253926 HC_gene_2348_tx_9 1 + 252644 253926 . 1 1283 0 -chrV 252845 253756 HC_gene_2348_tx_10 11 + 252845 253756 . 1 912 0 -chrV 252845 253926 HC_gene_2348_tx_11 1 + 252845 253926 . 1 1082 0 -chrV 253239 253756 HC_gene_2348_tx_12 25 + 253239 253756 . 1 518 0 -chrV 253239 253926 HC_gene_2348_tx_13 1 + 253239 253926 . 1 688 0 -chrV 253376 253756 HC_gene_2348_tx_14 26 + 253376 253756 . 1 381 0 -chrV 253660 254435 HC_gene_2587_tx_1 5 - 253660 254435 . 1 776 0 -chrV 253856 254199 HC_gene_2587_tx_2 15 - 253856 254199 . 1 344 0 -chrV 253856 254289 HC_gene_2587_tx_3 26 - 253856 254289 . 1 434 0 -chrV 253856 254435 HC_gene_2587_tx_4 141 - 253856 254435 . 1 580 0 -chrV 254465 255542 MC_gene_2588_tx_1 1 - 254465 255542 . 1 1078 0 -chrV 255395 256153 HC_gene_2349_tx_1 1 + 255395 256153 . 1 759 0 -chrV 256212 256970 HC_gene_2589_tx_1 42 - 256212 256970 . 1 759 0 -chrV 256212 257055 HC_gene_2589_tx_2 29 - 256212 257055 . 1 844 0 -chrV 256212 257772 HC_gene_2589_tx_3 17 - 256212 257772 . 1 1561 0 -chrV 256212 258054 HC_gene_2589_tx_4 209 - 256212 258054 . 1 1843 0 -chrV 258056 258977 HC_gene_2590_tx_1 1 - 258056 258977 . 1 922 0 -chrV 258056 259137 HC_gene_2590_tx_2 1 - 258056 259137 . 1 1082 0 -chrV 258056 259738 HC_gene_2590_tx_3 2 - 258056 259738 . 1 1683 0 -chrV 258582 258977 HC_gene_2590_tx_4 16 - 258582 258977 . 1 396 0 -chrV 258582 259137 HC_gene_2590_tx_5 17 - 258582 259137 . 1 556 0 -chrV 258582 259415 HC_gene_2590_tx_6 25 - 258582 259415 . 1 834 0 -chrV 258582 259567 HC_gene_2590_tx_7 7 - 258582 259567 . 1 986 0 -chrV 258582 259738 HC_gene_2590_tx_8 90 - 258582 259738 . 1 1157 0 -chrV 258582 259738 HC_gene_2590_tx_9 1 - 258582 259738 . 2 504,556 0,601 -chrV 258582 259807 HC_gene_2590_tx_10 1 - 258582 259807 . 2 440,371 0,855 -chrV 258582 259807 HC_gene_2590_tx_11 21 - 258582 259807 . 1 1226 0 -chrV 258582 259807 HC_gene_2590_tx_12 1 - 258582 259807 . 2 542,609 0,617 -chrV 258582 260020 HC_gene_2590_tx_13 1 - 258582 260020 . 1 1439 0 -chrV 259467 260669 MC_gene_2350_tx_1 1 + 259467 260669 . 1 1203 0 -chrV 260548 260952 HC_gene_2591_tx_1 2 - 260548 260952 . 1 405 0 -chrV 260548 261097 HC_gene_2591_tx_2 21 - 260548 261097 . 1 550 0 -chrV 260548 261260 HC_gene_2591_tx_3 1 - 260548 261260 . 1 713 0 -chrV 260753 261097 HC_gene_2591_tx_4 3 - 260753 261097 . 1 345 0 -chrV 260753 261401 HC_gene_2591_tx_5 1 - 260753 261401 . 1 649 0 -chrV 261063 261401 HC_gene_2591_tx_6 6 - 261063 261401 . 1 339 0 -chrV 261716 261977 MC_gene_2351_tx_1 1 + 261716 261977 . 1 262 0 -chrV 261779 264299 MC_gene_2592_tx_1 1 - 261779 264299 . 1 2521 0 -chrV 261874 263276 MC_gene_2592_tx_3 1 - 261874 263276 . 1 1403 0 -chrV 261874 263625 MC_gene_2592_tx_4 1 - 261874 263625 . 1 1752 0 -chrV 261874 264129 MC_gene_2592_tx_2 1 - 261874 264129 . 1 2256 0 -chrV 261951 262667 MC_gene_2352_tx_1 1 + 261951 262667 . 1 717 0 -chrV 263522 266144 HC_gene_2353_tx_1 1 + 263522 266144 . 1 2623 0 -chrV 264657 266144 HC_gene_2353_tx_2 1 + 264657 266144 . 1 1488 0 -chrV 264817 265173 HC_gene_2593_tx_1 53 - 264817 265173 . 1 357 0 -chrV 264817 265380 HC_gene_2593_tx_2 160 - 264817 265380 . 1 564 0 -chrV 264817 265458 HC_gene_2593_tx_3 33 - 264817 265458 . 1 642 0 -chrV 264817 265629 HC_gene_2593_tx_4 138 - 264817 265629 . 1 813 0 -chrV 264817 265811 HC_gene_2593_tx_5 394 - 264817 265811 . 1 995 0 -chrV 266389 267501 HC_gene_2594_tx_1 39 - 266389 267501 . 1 1113 0 -chrV 266389 267718 HC_gene_2594_tx_2 42 - 266389 267718 . 1 1330 0 -chrV 266389 267718 HC_gene_2594_tx_3 1 - 266389 267718 . 2 797,401 0,929 -chrV 266389 267718 HC_gene_2594_tx_4 1 - 266389 267718 . 2 495,690 0,640 -chrV 266389 268188 HC_gene_2594_tx_5 1 - 266389 268188 . 2 977,706 0,1094 -chrV 266389 268201 HC_gene_2594_tx_6 328 - 266389 268201 . 1 1813 0 -chrV 266389 268201 HC_gene_2594_tx_7 1 - 266389 268201 . 2 1087,672 0,1141 -chrV 266389 268201 HC_gene_2594_tx_8 1 - 266389 268201 . 2 686,1007 0,806 -chrV 266389 268201 HC_gene_2594_tx_9 1 - 266389 268201 . 2 1369,356 0,1457 -chrV 266389 268201 HC_gene_2594_tx_10 1 - 266389 268201 . 2 719,366 0,1447 -chrV 266389 268201 HC_gene_2594_tx_11 1 - 266389 268201 . 2 863,143 0,1670 -chrV 266389 268201 HC_gene_2594_tx_12 1 - 266389 268201 . 2 716,349 0,1464 -chrV 266389 268201 HC_gene_2594_tx_13 1 - 266389 268201 . 2 723,866 0,947 -chrV 266389 268201 HC_gene_2594_tx_14 1 - 266389 268201 . 2 1047,188 0,1625 -chrV 266389 268201 HC_gene_2594_tx_15 1 - 266389 268201 . 2 711,1042 0,771 -chrV 266389 268201 HC_gene_2594_tx_16 1 - 266389 268201 . 2 778,953 0,860 -chrV 266389 268318 HC_gene_2594_tx_17 4 - 266389 268318 . 1 1930 0 -chrV 267609 268201 HC_gene_2594_tx_18 9 - 267609 268201 . 1 593 0 -chrV 268132 268318 HC_gene_2594_tx_19 3 - 268132 268318 . 1 187 0 -chrV 268132 268843 HC_gene_2594_tx_20 1 - 268132 268843 . 1 712 0 -chrV 268132 269069 HC_gene_2594_tx_21 1 - 268132 269069 . 1 938 0 -chrV 268132 269069 HC_gene_2594_tx_22 1 - 268132 269069 . 2 508,339 0,599 -chrV 268364 268843 HC_gene_2594_tx_23 7 - 268364 268843 . 1 480 0 -chrV 268364 269069 HC_gene_2594_tx_24 8 - 268364 269069 . 1 706 0 -chrV 268364 269289 HC_gene_2594_tx_25 2 - 268364 269289 . 1 926 0 -chrV 268364 269724 HC_gene_2594_tx_26 1 - 268364 269724 . 1 1361 0 -chrV 268364 270206 HC_gene_2594_tx_27 2 - 268364 270206 . 1 1843 0 -chrV 268364 270206 HC_gene_2594_tx_28 3 - 268364 270206 . 2 1388,58 0,1785 -chrV 268364 270206 HC_gene_2594_tx_29 1 - 268364 270206 . 2 1005,58 0,1785 -chrV 268978 269425 HC_gene_2354_tx_1 134 + 268978 269425 . 1 448 0 -chrV 269323 269713 HC_gene_2594_tx_30 1 - 269323 269713 . 1 391 0 -chrV 269323 269724 HC_gene_2594_tx_31 1565 - 269323 269724 . 1 402 0 -chrV 269323 269724 HC_gene_2594_tx_32 1 - 269323 269724 . 2 140,147 0,255 -chrV 269323 269724 HC_gene_2594_tx_33 1 - 269323 269724 . 2 69,279 0,123 -chrV 269323 269724 HC_gene_2594_tx_34 1 - 269323 269724 . 2 174,159 0,243 -chrV 269323 269738 HC_gene_2594_tx_35 1 - 269323 269738 . 1 416 0 -chrV 269323 270078 HC_gene_2594_tx_36 13 - 269323 270078 . 1 756 0 -chrV 269323 270206 HC_gene_2594_tx_37 1037 - 269323 270206 . 2 429,58 0,826 -chrV 269323 270206 HC_gene_2594_tx_38 22 - 269323 270206 . 1 884 0 -chrV 269323 270206 HC_gene_2594_tx_39 5 - 269323 270206 . 2 461,58 0,826 -chrV 269323 270206 HC_gene_2594_tx_40 1 - 269323 270206 . 2 422,55 0,829 -chrV 269323 270206 HC_gene_2594_tx_41 2 - 269323 270206 . 2 417,58 0,826 -chrV 269323 270206 HC_gene_2594_tx_42 1 - 269323 270206 . 2 422,62 0,822 -chrV 269323 270206 HC_gene_2594_tx_43 3 - 269323 270206 . 2 415,58 0,826 -chrV 269323 270206 HC_gene_2594_tx_44 12 - 269323 270206 . 2 422,64 0,820 -chrV 269323 270206 HC_gene_2594_tx_45 1 - 269323 270206 . 2 278,58 0,826 -chrV 269323 270206 HC_gene_2594_tx_46 2 - 269323 270206 . 2 429,62 0,822 -chrV 269323 270206 HC_gene_2594_tx_47 1 - 269323 270206 . 2 411,58 0,826 -chrV 269323 270206 HC_gene_2594_tx_48 1 - 269323 270206 . 2 429,47 0,837 -chrV 269323 270206 HC_gene_2594_tx_49 1 - 269323 270206 . 2 351,58 0,826 -chrV 269323 270206 HC_gene_2594_tx_50 1 - 269323 270206 . 3 54,309,58 0,120,826 -chrV 269323 270206 HC_gene_2594_tx_51 1 - 269323 270206 . 2 414,58 0,826 -chrV 269323 270206 HC_gene_2594_tx_52 1 - 269323 270206 . 2 412,58 0,826 -chrV 269323 270206 HC_gene_2594_tx_53 1 - 269323 270206 . 3 208,176,58 0,253,826 -chrV 269323 270206 HC_gene_2594_tx_54 1 - 269323 270206 . 3 69,311,62 0,111,822 -chrV 269323 270206 HC_gene_2594_tx_55 2 - 269323 270206 . 2 422,60 0,824 -chrV 269323 270206 HC_gene_2594_tx_56 1 - 269323 270206 . 2 421,58 0,826 -chrV 269323 270206 HC_gene_2594_tx_57 1 - 269323 270206 . 2 403,58 0,826 -chrV 269323 270206 HC_gene_2594_tx_58 1 - 269323 270206 . 2 422,50 0,834 -chrV 270432 271170 HC_gene_2595_tx_1 11 - 270432 271170 . 1 739 0 -chrV 270580 271170 HC_gene_2595_tx_2 7 - 270580 271170 . 1 591 0 -chrV 270652 271076 HC_gene_2595_tx_3 33 - 270652 271076 . 1 425 0 -chrV 270652 271170 HC_gene_2595_tx_4 458 - 270652 271170 . 1 519 0 -chrV 270692 271508 HC_gene_2355_tx_1 1 + 270692 271508 . 2 81,689 0,128 -chrV 270692 271508 HC_gene_2355_tx_2 5 + 270692 271508 . 1 817 0 -chrV 270692 271616 HC_gene_2355_tx_3 4 + 270692 271616 . 1 925 0 -chrV 270692 271616 HC_gene_2355_tx_4 1 + 270692 271616 . 2 359,436 0,489 -chrV 271735 272224 HC_gene_2356_tx_1 112 + 271735 272224 . 1 490 0 -chrV 272086 274412 MC_gene_2596_tx_1 1 - 272086 274412 . 1 2327 0 -chrV 272462 273960 HC_gene_2357_tx_1 23 + 272462 273960 . 1 1499 0 -chrV 272462 274468 HC_gene_2357_tx_2 1 + 272462 274468 . 1 2007 0 -chrV 273806 277778 MC_gene_2597_tx_1 1 - 273806 277778 . 1 3973 0 -chrV 274347 275543 MC_gene_2597_tx_2 1 - 274347 275543 . 1 1197 0 -chrV 274427 276270 HC_gene_2358_tx_1 10 + 274427 276270 . 1 1844 0 -chrV 274427 276508 HC_gene_2358_tx_2 1 + 274427 276508 . 1 2082 0 -chrV 274427 278312 HC_gene_2358_tx_8 1 + 274427 278312 . 1 3886 0 -chrV 274516 276270 HC_gene_2358_tx_3 3 + 274516 276270 . 1 1755 0 -chrV 274516 276409 HC_gene_2358_tx_4 1 + 274516 276409 . 2 1724,111 0,1783 -chrV 274516 276508 HC_gene_2358_tx_5 1 + 274516 276508 . 1 1993 0 -chrV 274588 275868 MC_gene_2597_tx_3 1 - 274588 275868 . 1 1281 0 -chrV 274680 276349 HC_gene_2358_tx_6 1 + 274680 276349 . 1 1670 0 -chrV 274680 276508 HC_gene_2358_tx_7 1 + 274680 276508 . 1 1829 0 -chrV 278234 279667 HC_gene_2598_tx_1 17 - 278234 279667 . 1 1434 0 -chrV 279759 280247 HC_gene_2599_tx_1 40 - 279759 280247 . 1 489 0 -chrV 279759 280442 HC_gene_2599_tx_2 20 - 279759 280442 . 1 684 0 -chrV 279759 280565 HC_gene_2599_tx_3 3 - 279759 280565 . 1 807 0 -chrV 279759 280622 HC_gene_2599_tx_4 1 - 279759 280622 . 2 454,223 0,641 -chrV 279759 280622 HC_gene_2599_tx_5 10 - 279759 280622 . 1 864 0 -chrV 279759 280743 HC_gene_2599_tx_6 178 - 279759 280743 . 1 985 0 -chrV 279759 280743 HC_gene_2599_tx_7 1 - 279759 280743 . 2 77,799 0,186 -chrV 279759 280743 HC_gene_2599_tx_8 1 - 279759 280743 . 2 63,777 0,208 -chrV 279759 280743 HC_gene_2599_tx_9 1 - 279759 280743 . 2 79,799 0,186 -chrV 279759 280743 HC_gene_2599_tx_10 1 - 279759 280743 . 2 77,860 0,125 -chrV 279849 280916 MC_gene_2359_tx_1 1 + 279849 280916 . 1 1068 0 -chrV 281272 282571 HC_gene_2360_tx_1 3 + 281272 282571 . 1 1300 0 -chrV 281646 282571 HC_gene_2360_tx_2 195 + 281646 282571 . 1 926 0 -chrV 281970 282571 HC_gene_2360_tx_3 8 + 281970 282571 . 1 602 0 -chrV 282074 282571 HC_gene_2360_tx_4 22 + 282074 282571 . 1 498 0 -chrV 282183 284313 HC_gene_2600_tx_1 1 - 282183 284313 . 2 1289,769 0,1362 -chrV 282186 282571 HC_gene_2360_tx_5 34 + 282186 282571 . 1 386 0 -chrV 282261 284313 HC_gene_2600_tx_2 1 - 282261 284313 . 1 2053 0 -chrV 282461 284313 HC_gene_2600_tx_3 32 - 282461 284313 . 1 1853 0 -chrV 282461 284313 HC_gene_2600_tx_4 1 - 282461 284313 . 2 1042,159 0,1694 -chrV 282461 284313 HC_gene_2600_tx_5 1 - 282461 284313 . 2 692,1045 0,808 -chrV 282461 284313 HC_gene_2600_tx_6 1 - 282461 284313 . 2 1619,189 0,1664 -chrV 282461 284313 HC_gene_2600_tx_7 1 - 282461 284313 . 2 510,369 0,1484 -chrV 282583 284313 HC_gene_2600_tx_8 1 - 282583 284313 . 1 1731 0 -chrV 284478 285190 HC_gene_2361_tx_1 4 + 284478 285190 . 1 713 0 -chrV 285054 287442 HC_gene_2362_tx_1 1 + 285054 287442 . 1 2389 0 -chrV 285112 285495 HC_gene_2601_tx_1 5 - 285112 285495 . 1 384 0 -chrV 285112 286969 HC_gene_2601_tx_2 1 - 285112 286969 . 1 1858 0 -chrV 285112 287183 HC_gene_2601_tx_3 17 - 285112 287183 . 1 2072 0 -chrV 285201 287442 HC_gene_2362_tx_2 2 + 285201 287442 . 1 2242 0 -chrV 285280 287442 HC_gene_2362_tx_3 2 + 285280 287442 . 1 2163 0 -chrV 287570 289342 MC_gene_2602_tx_1 1 - 287570 289342 . 1 1773 0 -chrV 287731 289162 MC_gene_2602_tx_2 1 - 287731 289162 . 1 1432 0 -chrV 288266 288518 MC_gene_2602_tx_3 1 - 288266 288518 . 1 253 0 -chrV 289341 290994 MC_gene_2363_tx_1 1 + 289341 290994 . 1 1654 0 -chrV 289417 290004 MC_gene_2363_tx_3 1 + 289417 290004 . 1 588 0 -chrV 289603 290943 MC_gene_2363_tx_2 1 + 289603 290943 . 1 1341 0 -chrV 290831 291141 HC_gene_2603_tx_1 1 - 290831 291141 . 1 311 0 -chrV 290831 291457 HC_gene_2603_tx_2 2 - 290831 291457 . 1 627 0 -chrV 290831 291551 HC_gene_2603_tx_3 6 - 290831 291551 . 1 721 0 -chrV 291775 292643 HC_gene_2364_tx_1 16 + 291775 292643 . 1 869 0 -chrV 291837 292643 HC_gene_2364_tx_2 19 + 291837 292643 . 1 807 0 -chrV 291989 292643 HC_gene_2364_tx_3 298 + 291989 292643 . 1 655 0 -chrV 292154 292643 HC_gene_2364_tx_4 22 + 292154 292643 . 1 490 0 -chrV 292950 294831 LC_gene_2604_tx_1 1 - 292950 294831 . 1 1882 0 -chrV 292967 294939 HC_gene_2365_tx_1 19 + 292967 294939 . 1 1973 0 -chrV 292967 294939 HC_gene_2365_tx_2 1 + 292967 294939 . 2 244,1320 0,653 -chrV 292967 294939 HC_gene_2365_tx_3 1 + 292967 294939 . 2 393,1470 0,503 -chrV 293132 294939 HC_gene_2365_tx_4 1 + 293132 294939 . 1 1808 0 -chrV 293265 294939 HC_gene_2365_tx_5 1 + 293265 294939 . 1 1675 0 -chrV 293332 294939 HC_gene_2365_tx_6 2 + 293332 294939 . 1 1608 0 -chrV 294072 294939 HC_gene_2365_tx_7 4 + 294072 294939 . 1 868 0 -chrV 295360 298151 HC_gene_2366_tx_1 76 + 295360 298151 . 1 2792 0 -chrV 295360 298151 HC_gene_2366_tx_2 1 + 295360 298151 . 2 770,1110 0,1682 -chrV 295360 298151 HC_gene_2366_tx_3 1 + 295360 298151 . 2 1489,1247 0,1545 -chrV 295360 298151 HC_gene_2366_tx_4 1 + 295360 298151 . 2 1364,1266 0,1526 -chrV 295360 298151 HC_gene_2366_tx_5 1 + 295360 298151 . 2 1458,1211 0,1581 -chrV 295360 298151 HC_gene_2366_tx_6 1 + 295360 298151 . 2 1115,760 0,2032 -chrV 295496 298151 HC_gene_2366_tx_7 4 + 295496 298151 . 1 2656 0 -chrV 298012 298246 HC_gene_2605_tx_1 1 - 298012 298246 . 1 235 0 -chrV 298728 301815 HC_gene_2367_tx_1 1 + 298728 301815 . 1 3088 0 -chrV 298766 299220 LC_gene_2606_tx_1 1 - 298766 299220 . 1 455 0 -chrV 298888 301823 HC_gene_2367_tx_2 1 + 298888 301823 . 1 2936 0 -chrV 298889 301818 HC_gene_2367_tx_3 1 + 298889 301818 . 1 2930 0 -chrV 298893 301821 HC_gene_2367_tx_4 1 + 298893 301821 . 1 2929 0 -chrV 298894 301726 HC_gene_2367_tx_5 1 + 298894 301726 . 1 2833 0 -chrV 298894 301811 HC_gene_2367_tx_6 1 + 298894 301811 . 1 2918 0 -chrV 298900 301818 HC_gene_2367_tx_7 1 + 298900 301818 . 1 2919 0 -chrV 298904 301814 HC_gene_2367_tx_8 1 + 298904 301814 . 1 2911 0 -chrV 298905 301815 HC_gene_2367_tx_9 1 + 298905 301815 . 1 2911 0 -chrV 298910 301692 HC_gene_2367_tx_10 1 + 298910 301692 . 1 2783 0 -chrV 298910 301786 HC_gene_2367_tx_11 1 + 298910 301786 . 1 2877 0 -chrV 298910 301788 HC_gene_2367_tx_12 1 + 298910 301788 . 1 2879 0 -chrV 298910 301789 HC_gene_2367_tx_13 1 + 298910 301789 . 1 2880 0 -chrV 298910 301790 HC_gene_2367_tx_14 2 + 298910 301790 . 1 2881 0 -chrV 298910 301799 HC_gene_2367_tx_15 1 + 298910 301799 . 1 2890 0 -chrV 298910 301814 HC_gene_2367_tx_16 1 + 298910 301814 . 2 1130,1607 0,1298 -chrV 298910 301824 HC_gene_2367_tx_17 1 + 298910 301824 . 1 2915 0 -chrV 298910 301825 HC_gene_2367_tx_18 1 + 298910 301825 . 1 2916 0 -chrV 298910 301826 HC_gene_2367_tx_19 1 + 298910 301826 . 1 2917 0 -chrV 298910 301827 HC_gene_2367_tx_20 1 + 298910 301827 . 1 2918 0 -chrV 298910 301829 HC_gene_2367_tx_21 1 + 298910 301829 . 1 2920 0 -chrV 298910 301833 HC_gene_2367_tx_22 1 + 298910 301833 . 1 2924 0 -chrV 298910 302053 HC_gene_2367_tx_23 2 + 298910 302053 . 1 3144 0 -chrV 298910 302053 HC_gene_2367_tx_24 1 + 298910 302053 . 2 306,2778 0,366 -chrV 298912 301812 HC_gene_2367_tx_25 1 + 298912 301812 . 1 2901 0 -chrV 298915 301815 HC_gene_2367_tx_26 1 + 298915 301815 . 1 2901 0 -chrV 298915 301818 HC_gene_2367_tx_27 1 + 298915 301818 . 1 2904 0 -chrV 300916 301697 HC_gene_2367_tx_28 1 + 300916 301697 . 1 782 0 -chrV 300916 301701 HC_gene_2367_tx_29 1 + 300916 301701 . 1 786 0 -chrV 300916 301784 HC_gene_2367_tx_30 1 + 300916 301784 . 1 869 0 -chrV 300916 301787 HC_gene_2367_tx_31 2 + 300916 301787 . 1 872 0 -chrV 300916 301788 HC_gene_2367_tx_32 4 + 300916 301788 . 1 873 0 -chrV 300916 301790 HC_gene_2367_tx_33 1 + 300916 301790 . 1 875 0 -chrV 300916 301828 HC_gene_2367_tx_34 1 + 300916 301828 . 1 913 0 -chrV 300916 301829 HC_gene_2367_tx_35 1 + 300916 301829 . 1 914 0 -chrV 300916 301831 HC_gene_2367_tx_36 1 + 300916 301831 . 1 916 0 -chrV 300916 301833 HC_gene_2367_tx_37 1 + 300916 301833 . 1 918 0 -chrV 300916 301835 HC_gene_2367_tx_38 1 + 300916 301835 . 1 920 0 -chrV 301597 301835 HC_gene_2367_tx_39 1 + 301597 301835 . 1 239 0 -chrV 301597 302053 HC_gene_2367_tx_40 3 + 301597 302053 . 1 457 0 -chrV 301597 302162 HC_gene_2367_tx_41 1 + 301597 302162 . 1 566 0 -chrV 301719 302053 HC_gene_2367_tx_42 1 + 301719 302053 . 1 335 0 -chrV 301741 301961 HC_gene_2607_tx_1 7 - 301741 301961 . 1 221 0 -chrV 301741 302350 HC_gene_2607_tx_2 96 - 301741 302350 . 1 610 0 -chrV 301804 302053 HC_gene_2367_tx_43 5 + 301804 302053 . 1 250 0 -chrV 301804 302162 HC_gene_2367_tx_44 5 + 301804 302162 . 1 359 0 -chrV 301811 302350 HC_gene_2607_tx_3 10 - 301811 302350 . 1 540 0 -chrV 301916 302350 HC_gene_2607_tx_4 4 - 301916 302350 . 1 435 0 -chrV 302645 303032 HC_gene_2608_tx_1 3 - 302645 303032 . 1 388 0 -chrV 302645 303172 HC_gene_2608_tx_2 10 - 302645 303172 . 1 528 0 -chrV 302789 303346 HC_gene_2368_tx_1 388 + 302789 303346 . 1 558 0 -chrV 303241 303599 MC_gene_2609_tx_1 1 - 303241 303599 . 1 359 0 -chrV 303482 303973 HC_gene_2369_tx_1 3 + 303482 303973 . 1 492 0 -chrV 303587 303973 HC_gene_2369_tx_2 1 + 303587 303973 . 1 387 0 -chrV 303774 303973 HC_gene_2369_tx_3 1 + 303774 303973 . 1 200 0 -chrV 303774 305742 HC_gene_2369_tx_4 1 + 303774 305742 . 1 1969 0 -chrV 303774 305868 HC_gene_2369_tx_5 1 + 303774 305868 . 1 2095 0 -chrV 303951 305683 HC_gene_2369_tx_6 4 + 303951 305683 . 1 1733 0 -chrV 303951 305742 HC_gene_2369_tx_7 6 + 303951 305742 . 1 1792 0 -chrV 303951 305868 HC_gene_2369_tx_8 29 + 303951 305868 . 1 1918 0 -chrV 303951 305868 HC_gene_2369_tx_9 1 + 303951 305868 . 2 272,1220 0,698 -chrV 303951 305962 HC_gene_2369_tx_10 1 + 303951 305962 . 2 1090,826 0,1186 -chrV 305181 305683 HC_gene_2369_tx_11 2 + 305181 305683 . 1 503 0 -chrV 305181 305742 HC_gene_2369_tx_12 1 + 305181 305742 . 1 562 0 -chrV 305181 305868 HC_gene_2369_tx_13 12 + 305181 305868 . 1 688 0 -chrV 305181 305962 HC_gene_2369_tx_14 1 + 305181 305962 . 1 782 0 -chrV 305489 305742 HC_gene_2369_tx_15 5 + 305489 305742 . 1 254 0 -chrV 305489 305868 HC_gene_2369_tx_16 17 + 305489 305868 . 1 380 0 -chrV 305595 305875 HC_gene_2610_tx_1 1 - 305595 305875 . 1 281 0 -chrV 306304 307316 HC_gene_2370_tx_1 145 + 306304 307316 . 2 22,525 0,488 -chrV 306304 307316 HC_gene_2370_tx_2 74 + 306304 307316 . 1 1013 0 -chrV 306780 307316 HC_gene_2370_tx_3 4087 + 306780 307316 . 1 537 0 -chrV 307447 308186 HC_gene_2371_tx_1 1 + 307447 308186 . 1 740 0 -chrV 307447 308194 HC_gene_2371_tx_2 1 + 307447 308194 . 2 510,127 0,621 -chrV 307623 308179 HC_gene_2372_tx_1 2 + 307623 308179 . 3 124,108,112 0,226,445 -chrV 307623 308180 HC_gene_2372_tx_2 1 + 307623 308180 . 3 124,108,113 0,226,445 -chrV 307623 308181 HC_gene_2372_tx_3 1 + 307623 308181 . 3 124,108,114 0,226,445 -chrV 307623 308182 HC_gene_2372_tx_4 1 + 307623 308182 . 3 124,108,115 0,226,445 -chrV 307623 308183 HC_gene_2372_tx_5 2 + 307623 308183 . 3 124,108,116 0,226,445 -chrV 307623 308184 HC_gene_2372_tx_6 6 + 307623 308184 . 3 124,108,117 0,226,445 -chrV 307623 308185 HC_gene_2372_tx_7 25 + 307623 308185 . 3 124,108,118 0,226,445 -chrV 307623 308185 HC_gene_2372_tx_8 1 + 307623 308185 . 3 96,147,115 0,180,448 -chrV 307623 308185 HC_gene_2372_tx_9 2 + 307623 308185 . 3 128,108,118 0,226,445 -chrV 307623 308185 HC_gene_2372_tx_10 1 + 307623 308185 . 1 563 0 -chrV 307623 308186 HC_gene_2372_tx_11 43 + 307623 308186 . 3 124,108,119 0,226,445 -chrV 307623 308186 HC_gene_2372_tx_12 1 + 307623 308186 . 3 124,129,119 0,205,445 -chrV 307623 308186 HC_gene_2372_tx_13 1 + 307623 308186 . 3 128,108,119 0,226,445 -chrV 307623 308186 HC_gene_2372_tx_14 1 + 307623 308186 . 3 124,95,119 0,239,445 -chrV 307623 308186 HC_gene_2372_tx_15 1 + 307623 308186 . 1 564 0 -chrV 307623 308186 HC_gene_2372_tx_16 1 + 307623 308186 . 2 334,119 0,445 -chrV 307623 308187 HC_gene_2372_tx_17 15 + 307623 308187 . 3 124,108,120 0,226,445 -chrV 307623 308187 HC_gene_2372_tx_18 3 + 307623 308187 . 3 128,108,120 0,226,445 -chrV 307623 308187 HC_gene_2372_tx_19 1 + 307623 308187 . 1 565 0 -chrV 307623 308188 HC_gene_2372_tx_20 6 + 307623 308188 . 3 124,108,121 0,226,445 -chrV 307623 308189 HC_gene_2372_tx_21 3 + 307623 308189 . 3 124,108,122 0,226,445 -chrV 307623 308190 HC_gene_2372_tx_22 1 + 307623 308190 . 3 124,108,123 0,226,445 -chrV 307623 308194 HC_gene_2372_tx_23 1 + 307623 308194 . 3 124,108,127 0,226,445 -chrV 307623 308197 HC_gene_2372_tx_24 22 + 307623 308197 . 3 124,108,130 0,226,445 -chrV 307623 308382 HC_gene_2372_tx_25 58 + 307623 308382 . 3 124,108,315 0,226,445 -chrV 307623 308382 HC_gene_2372_tx_26 1 + 307623 308382 . 2 124,534 0,226 -chrV 307623 308382 HC_gene_2372_tx_27 1 + 307623 308382 . 1 760 0 -chrV 307623 308382 HC_gene_2372_tx_28 4 + 307623 308382 . 2 334,315 0,445 -chrV 307623 308382 HC_gene_2372_tx_29 1 + 307623 308382 . 3 124,137,315 0,197,445 -chrV 308272 311344 HC_gene_2611_tx_1 7 - 308272 311344 . 1 3073 0 -chrV 308272 311344 HC_gene_2611_tx_2 1 - 308272 311344 . 2 810,1643 0,1430 -chrV 309755 311904 MC_gene_2373_tx_1 1 + 309755 311904 . 1 2150 0 -chrV 311810 312087 LC_gene_2612_tx_1 1 - 311810 312087 . 1 278 0 -chrV 312290 313327 HC_gene_2613_tx_1 3 - 312290 313327 . 1 1038 0 -chrV 312290 313661 HC_gene_2613_tx_3 7 - 312290 313661 . 1 1372 0 -chrV 312290 313891 HC_gene_2613_tx_4 1 - 312290 313891 . 1 1602 0 -chrV 312290 313977 HC_gene_2613_tx_5 7 - 312290 313977 . 1 1688 0 -chrV 312437 313327 HC_gene_2613_tx_2 2 - 312437 313327 . 1 891 0 -chrV 312437 313661 HC_gene_2613_tx_6 2 - 312437 313661 . 1 1225 0 -chrV 312437 313977 HC_gene_2613_tx_7 1 - 312437 313977 . 1 1541 0 -chrV 313563 313931 HC_gene_2374_tx_1 3 + 313563 313931 . 1 369 0 -chrV 314039 314259 MC_gene_2375_tx_1 1 + 314039 314259 . 1 221 0 -chrV 314147 316548 HC_gene_2614_tx_1 1 - 314147 316548 . 1 2402 0 -chrV 314469 316548 HC_gene_2614_tx_2 16 - 314469 316548 . 1 2080 0 -chrV 314469 316548 HC_gene_2614_tx_3 1 - 314469 316548 . 2 903,1105 0,975 -chrV 314469 316548 HC_gene_2614_tx_4 1 - 314469 316548 . 2 895,1117 0,963 -chrV 315903 316820 MC_gene_2376_tx_1 1 + 315903 316820 . 1 918 0 -chrV 316733 318542 HC_gene_2615_tx_1 27 - 316733 318542 . 1 1810 0 -chrV 316733 318542 HC_gene_2615_tx_2 1 - 316733 318542 . 2 761,988 0,822 -chrV 316771 316889 MC_gene_2377_tx_1 1 + 316771 316889 . 1 119 0 -chrV 318782 319490 MC_gene_2616_tx_1 1 - 318782 319490 . 1 709 0 -chrV 318842 319692 HC_gene_2378_tx_1 19 + 318842 319692 . 1 851 0 -chrV 318842 319816 HC_gene_2378_tx_2 33 + 318842 319816 . 1 975 0 -chrV 319014 319763 MC_gene_2617_tx_1 1 - 319014 319763 . 1 750 0 -chrV 319147 319692 HC_gene_2378_tx_3 7 + 319147 319692 . 1 546 0 -chrV 319147 319816 HC_gene_2378_tx_4 14 + 319147 319816 . 1 670 0 -chrV 319943 321947 HC_gene_2379_tx_1 32 + 319943 321947 . 1 2005 0 -chrV 319943 322177 HC_gene_2379_tx_2 1 + 319943 322177 . 1 2235 0 -chrV 320152 321947 HC_gene_2379_tx_3 8 + 320152 321947 . 1 1796 0 -chrV 320278 321947 HC_gene_2379_tx_4 6 + 320278 321947 . 1 1670 0 -chrV 321393 321947 HC_gene_2379_tx_5 15 + 321393 321947 . 1 555 0 -chrV 321448 321947 HC_gene_2379_tx_6 10 + 321448 321947 . 1 500 0 -chrV 322212 322608 HC_gene_2380_tx_1 2 + 322212 322608 . 1 397 0 -chrV 322212 322610 HC_gene_2380_tx_2 2 + 322212 322610 . 1 399 0 -chrV 322212 322692 HC_gene_2380_tx_3 50 + 322212 322692 . 1 481 0 -chrV 322212 322692 HC_gene_2380_tx_4 1 + 322212 322692 . 2 292,141 0,340 -chrV 322212 324289 HC_gene_2380_tx_7 12 + 322212 324289 . 1 2078 0 -chrV 322212 324289 HC_gene_2380_tx_8 1 + 322212 324289 . 2 1051,637 0,1441 -chrV 322212 324289 HC_gene_2380_tx_9 1 + 322212 324289 . 2 1044,956 0,1122 -chrV 322212 324356 HC_gene_2380_tx_10 2 + 322212 324356 . 1 2145 0 -chrV 322226 322692 HC_gene_2380_tx_5 4 + 322226 322692 . 1 467 0 -chrV 322228 322692 HC_gene_2380_tx_6 1 + 322228 322692 . 1 465 0 -chrV 322356 322610 HC_gene_2380_tx_17 1 + 322356 322610 . 1 255 0 -chrV 322356 322692 HC_gene_2380_tx_18 3 + 322356 322692 . 1 337 0 -chrV 322356 324289 HC_gene_2380_tx_11 2 + 322356 324289 . 1 1934 0 -chrV 322667 324289 HC_gene_2380_tx_12 87 + 322667 324289 . 1 1623 0 -chrV 322667 324289 HC_gene_2380_tx_13 1 + 322667 324289 . 2 797,790 0,833 -chrV 322667 324289 HC_gene_2380_tx_14 1 + 322667 324289 . 2 809,738 0,885 -chrV 322667 324356 HC_gene_2380_tx_15 7 + 322667 324356 . 1 1690 0 -chrV 322673 324289 HC_gene_2380_tx_16 1 + 322673 324289 . 2 611,829 0,788 -chrV 323269 324289 HC_gene_2380_tx_19 12 + 323269 324289 . 1 1021 0 -chrV 323269 324356 HC_gene_2380_tx_20 1 + 323269 324356 . 1 1088 0 -chrV 323523 324289 HC_gene_2380_tx_21 15 + 323523 324289 . 1 767 0 -chrV 324011 325977 HC_gene_2618_tx_1 1 - 324011 325977 . 1 1967 0 -chrV 324179 324765 HC_gene_2618_tx_6 5 - 324179 324765 . 1 587 0 -chrV 324179 324858 HC_gene_2618_tx_7 13 - 324179 324858 . 1 680 0 -chrV 324179 325769 HC_gene_2618_tx_2 6 - 324179 325769 . 1 1591 0 -chrV 324179 325769 HC_gene_2618_tx_3 1 - 324179 325769 . 2 68,830 0,761 -chrV 324179 325977 HC_gene_2618_tx_4 58 - 324179 325977 . 1 1799 0 -chrV 324179 325977 HC_gene_2618_tx_5 1 - 324179 325977 . 2 793,744 0,1055 -chrV 324179 326557 HC_gene_2618_tx_8 1 - 324179 326557 . 2 916,724 0,1655 -chrV 324179 326754 HC_gene_2618_tx_9 2 - 324179 326754 . 1 2576 0 -chrV 324179 326945 HC_gene_2618_tx_10 1 - 324179 326945 . 1 2767 0 -chrV 324287 325461 LC_gene_2381_tx_1 1 + 324287 325461 . 1 1175 0 -chrV 325971 327031 HC_gene_2618_tx_11 1 - 325971 327031 . 1 1061 0 -chrV 326134 326557 HC_gene_2618_tx_14 11 - 326134 326557 . 1 424 0 -chrV 326134 326671 HC_gene_2618_tx_15 4 - 326134 326671 . 1 538 0 -chrV 326134 326754 HC_gene_2618_tx_16 8 - 326134 326754 . 1 621 0 -chrV 326134 326945 HC_gene_2618_tx_12 7 - 326134 326945 . 1 812 0 -chrV 326134 327050 HC_gene_2618_tx_13 85 - 326134 327050 . 1 917 0 -chrV 326201 327104 LC_gene_2382_tx_1 1 + 326201 327104 . 1 904 0 -chrV 327243 327667 HC_gene_2383_tx_1 27 + 327243 327667 . 1 425 0 -chrV 327481 328173 MC_gene_2619_tx_1 1 - 327481 328173 . 1 693 0 -chrV 328437 330362 HC_gene_2384_tx_1 162 + 328437 330362 . 1 1926 0 -chrV 328437 330362 HC_gene_2384_tx_2 1 + 328437 330362 . 2 849,936 0,990 -chrV 328437 330362 HC_gene_2384_tx_3 1 + 328437 330362 . 2 275,1026 0,900 -chrV 328437 330362 HC_gene_2384_tx_4 1 + 328437 330362 . 2 440,839 0,1087 -chrV 328437 330362 HC_gene_2384_tx_5 1 + 328437 330362 . 2 154,1608 0,318 -chrV 328437 330362 HC_gene_2384_tx_6 1 + 328437 330362 . 2 1091,781 0,1145 -chrV 328437 330362 HC_gene_2384_tx_7 1 + 328437 330362 . 2 494,1337 0,589 -chrV 328727 330362 HC_gene_2384_tx_8 12 + 328727 330362 . 1 1636 0 -chrV 328727 330362 HC_gene_2384_tx_9 1 + 328727 330362 . 2 819,697 0,939 -chrV 329412 330343 LC_gene_2620_tx_1 1 - 329412 330343 . 1 932 0 -chrV 330537 332379 HC_gene_2385_tx_1 4 + 330537 332379 . 1 1843 0 -chrV 330537 332471 HC_gene_2385_tx_2 6 + 330537 332471 . 1 1935 0 -chrV 330700 332471 HC_gene_2385_tx_3 1 + 330700 332471 . 2 967,723 0,1049 -chrV 330700 332471 HC_gene_2385_tx_4 1 + 330700 332471 . 1 1772 0 -chrV 330961 332104 LC_gene_2621_tx_1 1 - 330961 332104 . 1 1144 0 -chrV 332372 332644 HC_gene_2622_tx_1 47 - 332372 332644 . 1 273 0 -chrV 332372 332858 HC_gene_2622_tx_2 581 - 332372 332858 . 1 487 0 -chrV 332843 333120 HC_gene_2386_tx_1 1 + 332843 333120 . 1 278 0 -chrV 333040 333383 HC_gene_2623_tx_1 17 - 333040 333383 . 1 344 0 -chrV 333040 334255 HC_gene_2623_tx_2 8 - 333040 334255 . 1 1216 0 -chrV 333040 334415 HC_gene_2623_tx_3 11 - 333040 334415 . 1 1376 0 -chrV 333040 334781 HC_gene_2623_tx_4 3 - 333040 334781 . 1 1742 0 -chrV 333040 334842 HC_gene_2623_tx_5 7 - 333040 334842 . 1 1803 0 -chrV 333040 335091 HC_gene_2623_tx_6 3 - 333040 335091 . 1 2052 0 -chrV 333040 335247 HC_gene_2623_tx_7 14 - 333040 335247 . 1 2208 0 -chrV 335261 336366 HC_gene_2624_tx_1 5 - 335261 336366 . 1 1106 0 -chrV 335261 337554 HC_gene_2624_tx_2 2 - 335261 337554 . 1 2294 0 -chrV 335261 337653 HC_gene_2624_tx_3 6 - 335261 337653 . 1 2393 0 -chrV 335448 337653 HC_gene_2624_tx_4 1 - 335448 337653 . 2 922,1148 0,1058 -chrV 335448 337653 HC_gene_2624_tx_5 2 - 335448 337653 . 1 2206 0 -chrV 335854 337653 HC_gene_2624_tx_6 1 - 335854 337653 . 1 1800 0 -chrV 335864 337653 HC_gene_2624_tx_7 4 - 335864 337653 . 1 1790 0 -chrV 335868 337653 HC_gene_2624_tx_8 1 - 335868 337653 . 1 1786 0 -chrV 335869 337653 HC_gene_2624_tx_9 3 - 335869 337653 . 1 1785 0 -chrV 335871 336366 HC_gene_2624_tx_19 3 - 335871 336366 . 1 496 0 -chrV 335871 337653 HC_gene_2624_tx_10 7 - 335871 337653 . 1 1783 0 -chrV 335873 336366 HC_gene_2624_tx_20 1 - 335873 336366 . 1 494 0 -chrV 335876 337554 HC_gene_2624_tx_11 1 - 335876 337554 . 1 1679 0 -chrV 335876 337653 HC_gene_2624_tx_12 1 - 335876 337653 . 1 1778 0 -chrV 335878 337653 HC_gene_2624_tx_13 1 - 335878 337653 . 1 1776 0 -chrV 335880 337653 HC_gene_2624_tx_14 2 - 335880 337653 . 1 1774 0 -chrV 335881 336366 HC_gene_2624_tx_21 1 - 335881 336366 . 1 486 0 -chrV 335883 336366 HC_gene_2624_tx_22 1 - 335883 336366 . 1 484 0 -chrV 335886 337554 HC_gene_2624_tx_15 1 - 335886 337554 . 1 1669 0 -chrV 335886 337653 HC_gene_2624_tx_16 3 - 335886 337653 . 1 1768 0 -chrV 335888 337653 HC_gene_2624_tx_17 1 - 335888 337653 . 2 1215,156 0,1610 -chrV 335888 337653 HC_gene_2624_tx_18 1 - 335888 337653 . 1 1766 0 -chrV 336013 336198 HC_gene_2387_tx_1 1 + 336013 336198 . 1 186 0 -chrV 336424 337668 MC_gene_2388_tx_1 1 + 336424 337668 . 1 1245 0 -chrV 337464 337653 HC_gene_2624_tx_23 6 - 337464 337653 . 1 190 0 -chrV 337895 339577 HC_gene_2389_tx_1 121 + 337895 339577 . 1 1683 0 -chrV 337895 339577 HC_gene_2389_tx_2 1 + 337895 339577 . 2 1057,578 0,1105 -chrV 337895 339730 HC_gene_2389_tx_3 6 + 337895 339730 . 1 1836 0 -chrV 337895 339730 HC_gene_2389_tx_4 1 + 337895 339730 . 2 1356,427 0,1409 -chrV 338408 339577 HC_gene_2389_tx_5 17 + 338408 339577 . 1 1170 0 -chrV 338408 339730 HC_gene_2389_tx_6 1 + 338408 339730 . 1 1323 0 -chrV 338505 339577 HC_gene_2389_tx_7 14 + 338505 339577 . 1 1073 0 -chrV 338911 339577 HC_gene_2389_tx_8 33 + 338911 339577 . 1 667 0 -chrV 338911 339730 HC_gene_2389_tx_9 1 + 338911 339730 . 1 820 0 -chrV 339635 341101 HC_gene_2625_tx_1 22 - 339635 341101 . 1 1467 0 -chrV 339635 341375 HC_gene_2625_tx_2 29 - 339635 341375 . 1 1741 0 -chrV 339635 341468 HC_gene_2625_tx_3 20 - 339635 341468 . 1 1834 0 -chrV 339635 341701 HC_gene_2625_tx_4 16 - 339635 341701 . 1 2067 0 -chrV 339635 342053 HC_gene_2625_tx_5 18 - 339635 342053 . 1 2419 0 -chrV 339635 342053 HC_gene_2625_tx_6 1 - 339635 342053 . 2 1352,847 0,1572 -chrV 339635 342238 HC_gene_2625_tx_7 151 - 339635 342238 . 1 2604 0 -chrV 339635 342238 HC_gene_2625_tx_8 1 - 339635 342238 . 2 1211,1323 0,1281 -chrV 339635 342238 HC_gene_2625_tx_9 1 - 339635 342238 . 2 1015,1522 0,1082 -chrV 339635 342238 HC_gene_2625_tx_10 1 - 339635 342238 . 2 1211,1302 0,1302 -chrV 339635 342238 HC_gene_2625_tx_11 1 - 339635 342238 . 2 1208,1323 0,1281 -chrV 339635 342238 HC_gene_2625_tx_12 1 - 339635 342238 . 2 393,2165 0,439 -chrV 339635 342238 HC_gene_2625_tx_13 1 - 339635 342238 . 2 1213,1295 0,1309 -chrV 339635 342238 HC_gene_2625_tx_14 1 - 339635 342238 . 2 1093,1459 0,1145 -chrV 339635 342324 HC_gene_2625_tx_15 4 - 339635 342324 . 1 2690 0 -chrV 339717 341101 HC_gene_2625_tx_16 3 - 339717 341101 . 1 1385 0 -chrV 339717 341375 HC_gene_2625_tx_17 1 - 339717 341375 . 1 1659 0 -chrV 339717 341468 HC_gene_2625_tx_18 4 - 339717 341468 . 1 1752 0 -chrV 339717 341701 HC_gene_2625_tx_19 2 - 339717 341701 . 1 1985 0 -chrV 339717 342053 HC_gene_2625_tx_20 3 - 339717 342053 . 1 2337 0 -chrV 339717 342238 HC_gene_2625_tx_21 26 - 339717 342238 . 1 2522 0 -chrV 339717 342238 HC_gene_2625_tx_22 1 - 339717 342238 . 2 1256,1047 0,1475 -chrV 339717 342238 HC_gene_2625_tx_23 1 - 339717 342238 . 2 1117,1353 0,1169 -chrV 339717 342324 HC_gene_2625_tx_24 2 - 339717 342324 . 1 2608 0 -chrV 342816 343347 HC_gene_2390_tx_1 20 + 342816 343347 . 1 532 0 -chrV 342816 343492 HC_gene_2390_tx_2 153 + 342816 343492 . 1 677 0 -chrV 342816 343492 HC_gene_2390_tx_3 1 + 342816 343492 . 2 78,533 0,144 -chrV 342826 343492 HC_gene_2390_tx_4 1 + 342826 343492 . 1 667 0 -chrV 342833 343492 HC_gene_2390_tx_5 1 + 342833 343492 . 1 660 0 -chrV 342842 343492 HC_gene_2390_tx_6 1 + 342842 343492 . 1 651 0 -chrV 342865 343492 HC_gene_2390_tx_7 1 + 342865 343492 . 1 628 0 -chrV 343040 343347 HC_gene_2390_tx_8 1 + 343040 343347 . 1 308 0 -chrV 343040 343492 HC_gene_2390_tx_9 17 + 343040 343492 . 1 453 0 -chrV 343261 347695 HC_gene_2626_tx_1 1 - 343261 347695 . 2 2041,2319 0,2116 -chrV 343261 347695 HC_gene_2626_tx_2 1 - 343261 347695 . 1 4435 0 -chrV 343483 347695 HC_gene_2626_tx_3 1 - 343483 347695 . 1 4213 0 -chrV 343497 343731 MC_gene_2391_tx_1 1 + 343497 343731 . 1 235 0 -chrV 344018 344846 LC_gene_2392_tx_1 1 + 344018 344846 . 1 829 0 -chrV 347782 348253 HC_gene_2627_tx_1 6 - 347782 348253 . 1 472 0 -chrV 347782 348414 HC_gene_2627_tx_2 22 - 347782 348414 . 2 420,138 0,495 -chrV 347782 348414 HC_gene_2627_tx_3 5 - 347782 348414 . 1 633 0 -chrV 347823 348481 MC_gene_2393_tx_1 1 + 347823 348481 . 1 659 0 -chrV 348050 348681 MC_gene_2394_tx_1 1 + 348050 348681 . 1 632 0 -chrV 348559 348817 HC_gene_2628_tx_1 18 - 348559 348817 . 1 259 0 -chrV 348559 348950 HC_gene_2628_tx_2 54 - 348559 348950 . 1 392 0 -chrV 348559 349206 HC_gene_2628_tx_3 60 - 348559 349206 . 1 648 0 -chrV 348559 349288 HC_gene_2628_tx_4 14 - 348559 349288 . 1 730 0 -chrV 348559 349447 HC_gene_2628_tx_5 281 - 348559 349447 . 1 889 0 -chrV 349935 351342 HC_gene_2395_tx_1 70 + 349935 351342 . 1 1408 0 -chrV 349935 351501 HC_gene_2395_tx_2 2 + 349935 351501 . 1 1567 0 -chrV 351598 353420 HC_gene_2396_tx_1 3 + 351598 353420 . 1 1823 0 -chrV 352299 353420 HC_gene_2396_tx_2 1 + 352299 353420 . 1 1122 0 -chrV 352564 353105 MC_gene_2629_tx_1 1 - 352564 353105 . 1 542 0 -chrV 353519 354005 LC_gene_2630_tx_1 1 - 353519 354005 . 1 487 0 -chrV 353738 354484 MC_gene_2397_tx_1 1 + 353738 354484 . 1 747 0 -chrV 355286 358155 HC_gene_2398_tx_1 3 + 355286 358155 . 1 2870 0 -chrV 357219 359081 HC_gene_2631_tx_1 1 - 357219 359081 . 1 1863 0 -chrV 358030 359081 HC_gene_2632_tx_1 78 - 358030 359081 . 1 1052 0 -chrV 358030 359081 HC_gene_2632_tx_2 1 - 358030 359081 . 2 479,482 0,570 -chrV 358030 359332 HC_gene_2632_tx_3 10 - 358030 359332 . 1 1303 0 -chrV 358030 359332 HC_gene_2632_tx_4 1 - 358030 359332 . 2 543,93 0,1210 -chrV 358030 359332 HC_gene_2632_tx_5 1 - 358030 359332 . 2 266,544 0,759 -chrV 358736 359024 LC_gene_2399_tx_1 1 + 358736 359024 . 1 289 0 -chrV 359280 360408 HC_gene_2400_tx_1 24 + 359280 360408 . 1 1129 0 -chrV 359280 360408 HC_gene_2400_tx_2 1 + 359280 360408 . 2 490,568 0,561 -chrV 359483 360408 HC_gene_2400_tx_3 90 + 359483 360408 . 1 926 0 -chrV 359483 360408 HC_gene_2400_tx_4 1 + 359483 360408 . 2 240,454 0,472 -chrV 359500 359912 LC_gene_2633_tx_1 1 - 359500 359912 . 1 413 0 -chrV 359615 360408 HC_gene_2400_tx_5 3 + 359615 360408 . 1 794 0 -chrV 359696 360408 HC_gene_2400_tx_6 18 + 359696 360408 . 1 713 0 -chrV 359696 360408 HC_gene_2400_tx_7 1 + 359696 360408 . 2 149,500 0,213 -chrV 359889 360408 HC_gene_2400_tx_8 28 + 359889 360408 . 1 520 0 -chrV 360079 360408 HC_gene_2400_tx_9 23 + 360079 360408 . 1 330 0 -chrV 360135 360408 HC_gene_2400_tx_10 11 + 360135 360408 . 1 274 0 -chrV 360376 361232 HC_gene_2634_tx_1 4 - 360376 361232 . 1 857 0 -chrV 360376 361829 HC_gene_2634_tx_2 10 - 360376 361829 . 1 1454 0 -chrV 360376 361829 HC_gene_2634_tx_3 1 - 360376 361829 . 2 456,747 0,707 -chrV 360376 362245 HC_gene_2634_tx_4 1 - 360376 362245 . 1 1870 0 -chrV 361363 362284 MC_gene_2401_tx_1 1 + 361363 362284 . 1 922 0 -chrV 362713 363742 HC_gene_2402_tx_1 1 + 362713 363742 . 1 1030 0 -chrV 362713 363747 HC_gene_2402_tx_2 1 + 362713 363747 . 1 1035 0 -chrV 362713 363748 HC_gene_2402_tx_3 1 + 362713 363748 . 1 1036 0 -chrV 362713 363749 HC_gene_2402_tx_4 1 + 362713 363749 . 1 1037 0 -chrV 362713 363755 HC_gene_2402_tx_5 1 + 362713 363755 . 1 1043 0 -chrV 362713 363763 HC_gene_2402_tx_6 1 + 362713 363763 . 1 1051 0 -chrV 362713 363764 HC_gene_2402_tx_7 1 + 362713 363764 . 1 1052 0 -chrV 362713 363774 HC_gene_2402_tx_8 1 + 362713 363774 . 1 1062 0 -chrV 362713 363780 HC_gene_2402_tx_9 1 + 362713 363780 . 1 1068 0 -chrV 362713 363795 HC_gene_2402_tx_10 2 + 362713 363795 . 1 1083 0 -chrV 362713 363797 HC_gene_2402_tx_11 1 + 362713 363797 . 1 1085 0 -chrV 362713 363801 HC_gene_2402_tx_12 1 + 362713 363801 . 1 1089 0 -chrV 362713 363802 HC_gene_2402_tx_13 1 + 362713 363802 . 1 1090 0 -chrV 362713 363804 HC_gene_2402_tx_14 1 + 362713 363804 . 1 1092 0 -chrV 362713 363807 HC_gene_2402_tx_15 2 + 362713 363807 . 1 1095 0 -chrV 362713 363808 HC_gene_2402_tx_16 1 + 362713 363808 . 1 1096 0 -chrV 362713 363810 HC_gene_2402_tx_17 1 + 362713 363810 . 1 1098 0 -chrV 362713 363815 HC_gene_2402_tx_18 1 + 362713 363815 . 1 1103 0 -chrV 362713 363816 HC_gene_2402_tx_19 1 + 362713 363816 . 1 1104 0 -chrV 362713 363819 HC_gene_2402_tx_20 1 + 362713 363819 . 1 1107 0 -chrV 362713 363822 HC_gene_2402_tx_21 3 + 362713 363822 . 1 1110 0 -chrV 362713 363827 HC_gene_2402_tx_22 1 + 362713 363827 . 1 1115 0 -chrV 362713 363833 HC_gene_2402_tx_23 1 + 362713 363833 . 1 1121 0 -chrV 362713 363834 HC_gene_2402_tx_24 1 + 362713 363834 . 1 1122 0 -chrV 362713 363835 HC_gene_2402_tx_25 5 + 362713 363835 . 1 1123 0 -chrV 362713 363836 HC_gene_2402_tx_26 2 + 362713 363836 . 1 1124 0 -chrV 362713 363840 HC_gene_2402_tx_27 1 + 362713 363840 . 1 1128 0 -chrV 362713 363842 HC_gene_2402_tx_28 4 + 362713 363842 . 1 1130 0 -chrV 362713 363843 HC_gene_2402_tx_29 4 + 362713 363843 . 1 1131 0 -chrV 362713 363845 HC_gene_2402_tx_30 2 + 362713 363845 . 1 1133 0 -chrV 362713 363854 HC_gene_2402_tx_31 1 + 362713 363854 . 1 1142 0 -chrV 362713 363867 HC_gene_2402_tx_32 1 + 362713 363867 . 1 1155 0 -chrV 363082 363731 HC_gene_2403_tx_1 2 + 363082 363731 . 1 650 0 -chrV 363082 363732 HC_gene_2403_tx_2 6 + 363082 363732 . 1 651 0 -chrV 363082 363733 HC_gene_2403_tx_3 5 + 363082 363733 . 1 652 0 -chrV 363082 363735 HC_gene_2403_tx_4 1 + 363082 363735 . 1 654 0 -chrV 363082 363736 HC_gene_2403_tx_5 1 + 363082 363736 . 1 655 0 -chrV 363082 363738 HC_gene_2403_tx_6 3 + 363082 363738 . 1 657 0 -chrV 363082 363739 HC_gene_2403_tx_7 1 + 363082 363739 . 1 658 0 -chrV 363082 363740 HC_gene_2403_tx_8 1 + 363082 363740 . 1 659 0 -chrV 363082 363741 HC_gene_2403_tx_9 12 + 363082 363741 . 1 660 0 -chrV 363082 363742 HC_gene_2403_tx_10 10 + 363082 363742 . 1 661 0 -chrV 363082 363742 HC_gene_2403_tx_11 1 + 363082 363742 . 2 517,97 0,564 -chrV 363082 363743 HC_gene_2403_tx_12 6 + 363082 363743 . 1 662 0 -chrV 363082 363744 HC_gene_2403_tx_13 2 + 363082 363744 . 1 663 0 -chrV 363082 363745 HC_gene_2403_tx_14 2 + 363082 363745 . 1 664 0 -chrV 363082 363746 HC_gene_2403_tx_15 4 + 363082 363746 . 1 665 0 -chrV 363082 363747 HC_gene_2403_tx_16 5 + 363082 363747 . 1 666 0 -chrV 363082 363748 HC_gene_2403_tx_17 37 + 363082 363748 . 1 667 0 -chrV 363082 363749 HC_gene_2403_tx_18 27 + 363082 363749 . 1 668 0 -chrV 363082 363750 HC_gene_2403_tx_19 2 + 363082 363750 . 1 669 0 -chrV 363082 363752 HC_gene_2403_tx_20 1 + 363082 363752 . 1 671 0 -chrV 363082 363753 HC_gene_2403_tx_21 2 + 363082 363753 . 1 672 0 -chrV 363082 363754 HC_gene_2403_tx_22 11 + 363082 363754 . 1 673 0 -chrV 363082 363755 HC_gene_2403_tx_23 2 + 363082 363755 . 1 674 0 -chrV 363082 363756 HC_gene_2403_tx_24 1 + 363082 363756 . 1 675 0 -chrV 363082 363757 HC_gene_2403_tx_25 15 + 363082 363757 . 1 676 0 -chrV 363082 363758 HC_gene_2403_tx_26 2 + 363082 363758 . 1 677 0 -chrV 363082 363759 HC_gene_2403_tx_27 15 + 363082 363759 . 1 678 0 -chrV 363082 363760 HC_gene_2403_tx_28 6 + 363082 363760 . 1 679 0 -chrV 363082 363761 HC_gene_2403_tx_29 11 + 363082 363761 . 1 680 0 -chrV 363082 363762 HC_gene_2403_tx_30 16 + 363082 363762 . 1 681 0 -chrV 363082 363763 HC_gene_2403_tx_31 30 + 363082 363763 . 1 682 0 -chrV 363082 363764 HC_gene_2403_tx_32 85 + 363082 363764 . 1 683 0 -chrV 363082 363765 HC_gene_2403_tx_33 15 + 363082 363765 . 1 684 0 -chrV 363082 363766 HC_gene_2403_tx_34 2 + 363082 363766 . 1 685 0 -chrV 363082 363767 HC_gene_2403_tx_35 21 + 363082 363767 . 1 686 0 -chrV 363082 363768 HC_gene_2403_tx_36 3 + 363082 363768 . 1 687 0 -chrV 363082 363769 HC_gene_2403_tx_37 10 + 363082 363769 . 1 688 0 -chrV 363082 363770 HC_gene_2403_tx_38 10 + 363082 363770 . 1 689 0 -chrV 363082 363771 HC_gene_2403_tx_39 5 + 363082 363771 . 1 690 0 -chrV 363082 363772 HC_gene_2403_tx_40 2 + 363082 363772 . 1 691 0 -chrV 363082 363773 HC_gene_2403_tx_41 15 + 363082 363773 . 1 692 0 -chrV 363082 363774 HC_gene_2403_tx_42 29 + 363082 363774 . 1 693 0 -chrV 363082 363775 HC_gene_2403_tx_43 13 + 363082 363775 . 1 694 0 -chrV 363082 363776 HC_gene_2403_tx_44 2 + 363082 363776 . 1 695 0 -chrV 363082 363779 HC_gene_2403_tx_45 6 + 363082 363779 . 1 698 0 -chrV 363082 363780 HC_gene_2403_tx_46 3 + 363082 363780 . 1 699 0 -chrV 363082 363781 HC_gene_2403_tx_47 4 + 363082 363781 . 1 700 0 -chrV 363082 363782 HC_gene_2403_tx_48 11 + 363082 363782 . 1 701 0 -chrV 363082 363783 HC_gene_2403_tx_49 11 + 363082 363783 . 1 702 0 -chrV 363082 363785 HC_gene_2403_tx_50 4 + 363082 363785 . 1 704 0 -chrV 363082 363786 HC_gene_2403_tx_51 1 + 363082 363786 . 1 705 0 -chrV 363082 363787 HC_gene_2403_tx_52 1 + 363082 363787 . 1 706 0 -chrV 363082 363788 HC_gene_2403_tx_53 2 + 363082 363788 . 1 707 0 -chrV 363082 363789 HC_gene_2403_tx_54 5 + 363082 363789 . 1 708 0 -chrV 363082 363790 HC_gene_2403_tx_55 2 + 363082 363790 . 1 709 0 -chrV 363082 363791 HC_gene_2403_tx_56 3 + 363082 363791 . 1 710 0 -chrV 363082 363792 HC_gene_2403_tx_57 6 + 363082 363792 . 1 711 0 -chrV 363082 363794 HC_gene_2403_tx_58 4 + 363082 363794 . 1 713 0 -chrV 363082 363794 HC_gene_2403_tx_59 1 + 363082 363794 . 2 353,290 0,423 -chrV 363082 363795 HC_gene_2403_tx_60 8 + 363082 363795 . 1 714 0 -chrV 363082 363796 HC_gene_2403_tx_61 11 + 363082 363796 . 1 715 0 -chrV 363082 363797 HC_gene_2403_tx_62 16 + 363082 363797 . 1 716 0 -chrV 363082 363798 HC_gene_2403_tx_63 2 + 363082 363798 . 1 717 0 -chrV 363082 363799 HC_gene_2403_tx_64 4 + 363082 363799 . 1 718 0 -chrV 363082 363800 HC_gene_2403_tx_65 10 + 363082 363800 . 1 719 0 -chrV 363082 363801 HC_gene_2403_tx_66 40 + 363082 363801 . 1 720 0 -chrV 363082 363802 HC_gene_2403_tx_67 6 + 363082 363802 . 1 721 0 -chrV 363082 363803 HC_gene_2403_tx_68 16 + 363082 363803 . 1 722 0 -chrV 363082 363804 HC_gene_2403_tx_69 13 + 363082 363804 . 1 723 0 -chrV 363082 363805 HC_gene_2403_tx_70 4 + 363082 363805 . 1 724 0 -chrV 363082 363806 HC_gene_2403_tx_71 2 + 363082 363806 . 1 725 0 -chrV 363082 363807 HC_gene_2403_tx_72 29 + 363082 363807 . 1 726 0 -chrV 363082 363808 HC_gene_2403_tx_73 15 + 363082 363808 . 1 727 0 -chrV 363082 363809 HC_gene_2403_tx_74 11 + 363082 363809 . 1 728 0 -chrV 363082 363810 HC_gene_2403_tx_75 5 + 363082 363810 . 1 729 0 -chrV 363082 363811 HC_gene_2403_tx_76 7 + 363082 363811 . 1 730 0 -chrV 363082 363812 HC_gene_2403_tx_77 5 + 363082 363812 . 1 731 0 -chrV 363082 363813 HC_gene_2403_tx_78 3 + 363082 363813 . 1 732 0 -chrV 363082 363814 HC_gene_2403_tx_79 30 + 363082 363814 . 1 733 0 -chrV 363082 363815 HC_gene_2403_tx_80 49 + 363082 363815 . 1 734 0 -chrV 363082 363815 HC_gene_2403_tx_81 1 + 363082 363815 . 2 610,77 0,657 -chrV 363082 363816 HC_gene_2403_tx_82 7 + 363082 363816 . 1 735 0 -chrV 363082 363817 HC_gene_2403_tx_83 10 + 363082 363817 . 1 736 0 -chrV 363082 363818 HC_gene_2403_tx_84 6 + 363082 363818 . 1 737 0 -chrV 363082 363819 HC_gene_2403_tx_85 15 + 363082 363819 . 1 738 0 -chrV 363082 363820 HC_gene_2403_tx_86 112 + 363082 363820 . 1 739 0 -chrV 363082 363821 HC_gene_2403_tx_87 9 + 363082 363821 . 1 740 0 -chrV 363082 363822 HC_gene_2403_tx_88 57 + 363082 363822 . 1 741 0 -chrV 363082 363823 HC_gene_2403_tx_89 43 + 363082 363823 . 1 742 0 -chrV 363082 363824 HC_gene_2403_tx_90 32 + 363082 363824 . 1 743 0 -chrV 363082 363825 HC_gene_2403_tx_91 18 + 363082 363825 . 1 744 0 -chrV 363082 363826 HC_gene_2403_tx_92 34 + 363082 363826 . 1 745 0 -chrV 363082 363827 HC_gene_2403_tx_93 8 + 363082 363827 . 1 746 0 -chrV 363082 363828 HC_gene_2403_tx_94 13 + 363082 363828 . 1 747 0 -chrV 363082 363829 HC_gene_2403_tx_95 68 + 363082 363829 . 1 748 0 -chrV 363082 363829 HC_gene_2403_tx_96 1 + 363082 363829 . 2 647,36 0,712 -chrV 363082 363830 HC_gene_2403_tx_97 9 + 363082 363830 . 1 749 0 -chrV 363082 363830 HC_gene_2403_tx_98 1 + 363082 363830 . 2 106,591 0,158 -chrV 363082 363831 HC_gene_2403_tx_99 17 + 363082 363831 . 1 750 0 -chrV 363082 363832 HC_gene_2403_tx_100 4 + 363082 363832 . 1 751 0 -chrV 363082 363833 HC_gene_2403_tx_101 75 + 363082 363833 . 1 752 0 -chrV 363082 363834 HC_gene_2403_tx_102 58 + 363082 363834 . 1 753 0 -chrV 363082 363834 HC_gene_2403_tx_103 1 + 363082 363834 . 2 282,244 0,509 -chrV 363082 363835 HC_gene_2403_tx_104 270 + 363082 363835 . 1 754 0 -chrV 363082 363836 HC_gene_2403_tx_105 111 + 363082 363836 . 1 755 0 -chrV 363082 363836 HC_gene_2403_tx_106 1 + 363082 363836 . 2 553,134 0,621 -chrV 363082 363837 HC_gene_2403_tx_107 7 + 363082 363837 . 1 756 0 -chrV 363082 363839 HC_gene_2403_tx_108 20 + 363082 363839 . 1 758 0 -chrV 363082 363840 HC_gene_2403_tx_109 82 + 363082 363840 . 1 759 0 -chrV 363082 363841 HC_gene_2403_tx_110 55 + 363082 363841 . 1 760 0 -chrV 363082 363842 HC_gene_2403_tx_111 178 + 363082 363842 . 1 761 0 -chrV 363082 363843 HC_gene_2403_tx_112 79 + 363082 363843 . 1 762 0 -chrV 363082 363844 HC_gene_2403_tx_113 24 + 363082 363844 . 1 763 0 -chrV 363082 363845 HC_gene_2403_tx_114 126 + 363082 363845 . 1 764 0 -chrV 363082 363846 HC_gene_2403_tx_115 2 + 363082 363846 . 1 765 0 -chrV 363082 363847 HC_gene_2403_tx_116 72 + 363082 363847 . 1 766 0 -chrV 363082 363848 HC_gene_2403_tx_117 3 + 363082 363848 . 1 767 0 -chrV 363082 363849 HC_gene_2403_tx_118 3 + 363082 363849 . 1 768 0 -chrV 363082 363850 HC_gene_2403_tx_119 14 + 363082 363850 . 1 769 0 -chrV 363082 363852 HC_gene_2403_tx_120 2 + 363082 363852 . 1 771 0 -chrV 363082 363853 HC_gene_2403_tx_121 7 + 363082 363853 . 1 772 0 -chrV 363082 363854 HC_gene_2403_tx_122 38 + 363082 363854 . 1 773 0 -chrV 363082 363855 HC_gene_2403_tx_123 1 + 363082 363855 . 2 683,38 0,736 -chrV 363082 363856 HC_gene_2403_tx_124 2 + 363082 363856 . 1 775 0 -chrV 363082 363857 HC_gene_2403_tx_125 4 + 363082 363857 . 1 776 0 -chrV 363082 363858 HC_gene_2403_tx_126 5 + 363082 363858 . 1 777 0 -chrV 363082 363859 HC_gene_2403_tx_127 3 + 363082 363859 . 1 778 0 -chrV 363082 363860 HC_gene_2403_tx_128 11 + 363082 363860 . 1 779 0 -chrV 363082 363861 HC_gene_2403_tx_129 1 + 363082 363861 . 1 780 0 -chrV 363082 363865 HC_gene_2403_tx_130 3 + 363082 363865 . 1 784 0 -chrV 363082 363866 HC_gene_2403_tx_131 2 + 363082 363866 . 1 785 0 -chrV 363082 363867 HC_gene_2403_tx_132 2 + 363082 363867 . 1 786 0 -chrV 363082 363868 HC_gene_2403_tx_133 2 + 363082 363868 . 1 787 0 -chrV 363082 363871 HC_gene_2403_tx_134 2 + 363082 363871 . 1 790 0 -chrV 363082 363877 HC_gene_2403_tx_135 2 + 363082 363877 . 1 796 0 -chrV 363082 363878 HC_gene_2403_tx_136 1 + 363082 363878 . 1 797 0 -chrV 363082 363879 HC_gene_2403_tx_137 1 + 363082 363879 . 1 798 0 -chrV 363082 363881 HC_gene_2403_tx_138 1 + 363082 363881 . 1 800 0 -chrV 363082 363884 HC_gene_2403_tx_139 2 + 363082 363884 . 1 803 0 -chrV 363082 363890 HC_gene_2403_tx_140 1 + 363082 363890 . 1 809 0 -chrV 363082 363894 HC_gene_2403_tx_141 1 + 363082 363894 . 1 813 0 -chrV 363082 363902 HC_gene_2403_tx_142 1 + 363082 363902 . 1 821 0 -chrV 363082 363905 HC_gene_2403_tx_143 1 + 363082 363905 . 1 824 0 -chrV 363082 363906 HC_gene_2403_tx_144 2 + 363082 363906 . 1 825 0 -chrV 363082 363909 HC_gene_2403_tx_145 2 + 363082 363909 . 1 828 0 -chrV 363082 363910 HC_gene_2403_tx_146 1 + 363082 363910 . 1 829 0 -chrV 363082 364007 HC_gene_2403_tx_147 10 + 363082 364007 . 1 926 0 -chrV 363217 363732 HC_gene_2403_tx_148 1 + 363217 363732 . 1 516 0 -chrV 363217 363733 HC_gene_2403_tx_149 1 + 363217 363733 . 1 517 0 -chrV 363217 363741 HC_gene_2403_tx_150 2 + 363217 363741 . 1 525 0 -chrV 363217 363743 HC_gene_2403_tx_151 1 + 363217 363743 . 1 527 0 -chrV 363217 363747 HC_gene_2403_tx_152 2 + 363217 363747 . 1 531 0 -chrV 363217 363748 HC_gene_2403_tx_153 2 + 363217 363748 . 1 532 0 -chrV 363217 363749 HC_gene_2403_tx_154 3 + 363217 363749 . 1 533 0 -chrV 363217 363750 HC_gene_2403_tx_155 1 + 363217 363750 . 1 534 0 -chrV 363217 363754 HC_gene_2403_tx_156 3 + 363217 363754 . 1 538 0 -chrV 363217 363755 HC_gene_2403_tx_157 1 + 363217 363755 . 1 539 0 -chrV 363217 363756 HC_gene_2403_tx_158 1 + 363217 363756 . 1 540 0 -chrV 363217 363757 HC_gene_2403_tx_159 1 + 363217 363757 . 1 541 0 -chrV 363217 363761 HC_gene_2403_tx_160 1 + 363217 363761 . 1 545 0 -chrV 363217 363762 HC_gene_2403_tx_161 2 + 363217 363762 . 1 546 0 -chrV 363217 363763 HC_gene_2403_tx_162 3 + 363217 363763 . 1 547 0 -chrV 363217 363764 HC_gene_2403_tx_163 9 + 363217 363764 . 1 548 0 -chrV 363217 363765 HC_gene_2403_tx_164 1 + 363217 363765 . 1 549 0 -chrV 363217 363766 HC_gene_2403_tx_165 1 + 363217 363766 . 1 550 0 -chrV 363217 363767 HC_gene_2403_tx_166 1 + 363217 363767 . 1 551 0 -chrV 363217 363768 HC_gene_2403_tx_167 1 + 363217 363768 . 1 552 0 -chrV 363217 363770 HC_gene_2403_tx_168 1 + 363217 363770 . 1 554 0 -chrV 363217 363773 HC_gene_2403_tx_169 1 + 363217 363773 . 1 557 0 -chrV 363217 363774 HC_gene_2403_tx_170 3 + 363217 363774 . 1 558 0 -chrV 363217 363775 HC_gene_2403_tx_171 1 + 363217 363775 . 1 559 0 -chrV 363217 363776 HC_gene_2403_tx_172 1 + 363217 363776 . 1 560 0 -chrV 363217 363779 HC_gene_2403_tx_173 1 + 363217 363779 . 1 563 0 -chrV 363217 363783 HC_gene_2403_tx_174 1 + 363217 363783 . 1 567 0 -chrV 363217 363792 HC_gene_2403_tx_175 1 + 363217 363792 . 1 576 0 -chrV 363217 363795 HC_gene_2403_tx_176 3 + 363217 363795 . 1 579 0 -chrV 363217 363796 HC_gene_2403_tx_177 2 + 363217 363796 . 1 580 0 -chrV 363217 363801 HC_gene_2403_tx_178 6 + 363217 363801 . 1 585 0 -chrV 363217 363807 HC_gene_2403_tx_179 5 + 363217 363807 . 1 591 0 -chrV 363217 363808 HC_gene_2403_tx_180 2 + 363217 363808 . 1 592 0 -chrV 363217 363811 HC_gene_2403_tx_181 1 + 363217 363811 . 1 595 0 -chrV 363217 363812 HC_gene_2403_tx_182 1 + 363217 363812 . 1 596 0 -chrV 363217 363814 HC_gene_2403_tx_183 3 + 363217 363814 . 1 598 0 -chrV 363217 363815 HC_gene_2403_tx_184 5 + 363217 363815 . 1 599 0 -chrV 363217 363819 HC_gene_2403_tx_185 2 + 363217 363819 . 1 603 0 -chrV 363217 363820 HC_gene_2403_tx_186 9 + 363217 363820 . 1 604 0 -chrV 363217 363821 HC_gene_2403_tx_187 3 + 363217 363821 . 1 605 0 -chrV 363217 363822 HC_gene_2403_tx_188 4 + 363217 363822 . 1 606 0 -chrV 363217 363823 HC_gene_2403_tx_189 5 + 363217 363823 . 1 607 0 -chrV 363217 363824 HC_gene_2403_tx_190 4 + 363217 363824 . 1 608 0 -chrV 363217 363825 HC_gene_2403_tx_191 1 + 363217 363825 . 1 609 0 -chrV 363217 363826 HC_gene_2403_tx_192 8 + 363217 363826 . 1 610 0 -chrV 363217 363828 HC_gene_2403_tx_193 2 + 363217 363828 . 1 612 0 -chrV 363217 363829 HC_gene_2403_tx_194 3 + 363217 363829 . 1 613 0 -chrV 363217 363830 HC_gene_2403_tx_195 2 + 363217 363830 . 1 614 0 -chrV 363217 363831 HC_gene_2403_tx_196 3 + 363217 363831 . 1 615 0 -chrV 363217 363832 HC_gene_2403_tx_197 1 + 363217 363832 . 1 616 0 -chrV 363217 363833 HC_gene_2403_tx_198 12 + 363217 363833 . 1 617 0 -chrV 363217 363834 HC_gene_2403_tx_199 4 + 363217 363834 . 1 618 0 -chrV 363217 363835 HC_gene_2403_tx_200 30 + 363217 363835 . 1 619 0 -chrV 363217 363836 HC_gene_2403_tx_201 6 + 363217 363836 . 1 620 0 -chrV 363217 363837 HC_gene_2403_tx_202 1 + 363217 363837 . 1 621 0 -chrV 363217 363839 HC_gene_2403_tx_203 3 + 363217 363839 . 1 623 0 -chrV 363217 363840 HC_gene_2403_tx_204 11 + 363217 363840 . 1 624 0 -chrV 363217 363841 HC_gene_2403_tx_205 7 + 363217 363841 . 1 625 0 -chrV 363217 363842 HC_gene_2403_tx_206 22 + 363217 363842 . 1 626 0 -chrV 363217 363843 HC_gene_2403_tx_207 8 + 363217 363843 . 1 627 0 -chrV 363217 363844 HC_gene_2403_tx_208 5 + 363217 363844 . 1 628 0 -chrV 363217 363845 HC_gene_2403_tx_209 19 + 363217 363845 . 1 629 0 -chrV 363217 363847 HC_gene_2403_tx_210 9 + 363217 363847 . 1 631 0 -chrV 363217 363850 HC_gene_2403_tx_211 4 + 363217 363850 . 1 634 0 -chrV 363217 363852 HC_gene_2403_tx_212 1 + 363217 363852 . 1 636 0 -chrV 363217 363853 HC_gene_2403_tx_213 1 + 363217 363853 . 1 637 0 -chrV 363217 363854 HC_gene_2403_tx_214 5 + 363217 363854 . 1 638 0 -chrV 363217 363860 HC_gene_2403_tx_215 1 + 363217 363860 . 1 644 0 -chrV 363217 363864 HC_gene_2403_tx_216 1 + 363217 363864 . 1 648 0 -chrV 363217 363879 HC_gene_2403_tx_217 1 + 363217 363879 . 1 663 0 -chrV 363217 363900 HC_gene_2403_tx_218 1 + 363217 363900 . 1 684 0 -chrV 363217 364007 HC_gene_2403_tx_219 4 + 363217 364007 . 1 791 0 -chrV 363706 364252 MC_gene_2635_tx_1 1 - 363706 364252 . 1 547 0 -chrV 363711 364098 MC_gene_2635_tx_2 1 - 363711 364098 . 1 388 0 -chrV 364091 366680 HC_gene_2404_tx_1 1 + 364091 366680 . 2 1162,1316 0,1274 -chrV 364091 366680 HC_gene_2404_tx_2 2 + 364091 366680 . 1 2590 0 -chrV 364221 366680 HC_gene_2404_tx_3 2 + 364221 366680 . 1 2460 0 -chrV 364447 366680 HC_gene_2404_tx_4 3 + 364447 366680 . 1 2234 0 -chrV 364534 366680 HC_gene_2404_tx_5 10 + 364534 366680 . 1 2147 0 -chrV 364534 366680 HC_gene_2404_tx_6 1 + 364534 366680 . 2 1100,972 0,1175 -chrV 364729 366680 HC_gene_2404_tx_7 2 + 364729 366680 . 1 1952 0 -chrV 364876 366680 HC_gene_2404_tx_8 4 + 364876 366680 . 1 1805 0 -chrV 365380 366680 HC_gene_2404_tx_9 5 + 365380 366680 . 1 1301 0 -chrV 365451 366680 HC_gene_2404_tx_10 5 + 365451 366680 . 1 1230 0 -chrV 365991 366680 HC_gene_2404_tx_11 6 + 365991 366680 . 1 690 0 -chrV 366162 366680 HC_gene_2404_tx_12 5 + 366162 366680 . 1 519 0 -chrV 366783 367684 HC_gene_2405_tx_1 3 + 366783 367684 . 1 902 0 -chrV 366783 367800 HC_gene_2405_tx_2 1 + 366783 367800 . 1 1018 0 -chrV 366783 367806 HC_gene_2405_tx_3 2 + 366783 367806 . 1 1024 0 -chrV 366783 368480 HC_gene_2405_tx_4 1 + 366783 368480 . 2 854,740 0,958 -chrV 367617 371851 HC_gene_2636_tx_1 1 - 367617 371851 . 1 4235 0 -chrV 367620 372060 HC_gene_2636_tx_2 1 - 367620 372060 . 1 4441 0 -chrV 367676 372060 HC_gene_2636_tx_3 1 - 367676 372060 . 1 4385 0 -chrV 367680 369513 HC_gene_2636_tx_6 1 - 367680 369513 . 1 1834 0 -chrV 367730 369513 HC_gene_2636_tx_7 1 - 367730 369513 . 1 1784 0 -chrV 367735 372060 HC_gene_2636_tx_4 1 - 367735 372060 . 2 3936,322 0,4004 -chrV 367763 372060 HC_gene_2636_tx_5 1 - 367763 372060 . 1 4298 0 -chrV 370322 372060 HC_gene_2636_tx_8 2 - 370322 372060 . 1 1739 0 -chrV 372114 373423 MC_gene_2406_tx_1 1 + 372114 373423 . 1 1310 0 -chrV 373183 374722 HC_gene_2637_tx_1 2 - 373183 374722 . 1 1540 0 -chrV 373335 374371 HC_gene_2637_tx_3 4 - 373335 374371 . 1 1037 0 -chrV 373335 374722 HC_gene_2637_tx_2 48 - 373335 374722 . 1 1388 0 -chrV 374936 376708 HC_gene_2638_tx_1 3 - 374936 376708 . 1 1773 0 -chrV 374936 377783 HC_gene_2638_tx_2 5 - 374936 377783 . 1 2848 0 -chrV 376004 377763 LC_gene_2407_tx_1 1 + 376004 377763 . 1 1760 0 -chrV 377973 378784 HC_gene_2408_tx_1 2 + 377973 378784 . 1 812 0 -chrV 377973 378872 HC_gene_2408_tx_2 2 + 377973 378872 . 1 900 0 -chrV 378531 379155 HC_gene_2639_tx_1 1 - 378531 379155 . 1 625 0 -chrV 378531 379339 HC_gene_2639_tx_2 1 - 378531 379339 . 1 809 0 -chrV 378608 379155 HC_gene_2639_tx_3 29 - 378608 379155 . 1 548 0 -chrV 378608 379257 HC_gene_2639_tx_4 18 - 378608 379257 . 1 650 0 -chrV 378608 379339 HC_gene_2639_tx_5 20 - 378608 379339 . 1 732 0 -chrV 378608 379339 HC_gene_2639_tx_6 1 - 378608 379339 . 2 409,237 0,495 -chrV 378608 380189 HC_gene_2640_tx_1 8 - 378608 380189 . 1 1582 0 -chrV 378608 380189 HC_gene_2640_tx_2 1 - 378608 380189 . 2 1009,302 0,1280 -chrV 378608 382216 HC_gene_2640_tx_3 42 - 378608 382216 . 1 3609 0 -chrV 378608 382216 HC_gene_2640_tx_4 1 - 378608 382216 . 2 2871,639 0,2970 -chrV 378608 382216 HC_gene_2640_tx_5 1 - 378608 382216 . 2 587,2775 0,834 -chrV 382449 383806 HC_gene_2641_tx_1 2 - 382449 383806 . 1 1358 0 -chrV 382449 386189 HC_gene_2641_tx_2 2 - 382449 386189 . 1 3741 0 -chrV 382470 382732 HC_gene_2409_tx_1 4 + 382470 382732 . 1 263 0 -chrV 382542 385483 HC_gene_2641_tx_3 1 - 382542 385483 . 1 2942 0 -chrV 382542 386189 HC_gene_2641_tx_4 1 - 382542 386189 . 1 3648 0 -chrV 387143 387895 HC_gene_2410_tx_1 186 + 387143 387895 . 1 753 0 -chrV 387448 387895 HC_gene_2410_tx_2 21 + 387448 387895 . 1 448 0 -chrV 387546 387895 HC_gene_2410_tx_3 33 + 387546 387895 . 1 350 0 -chrV 388061 390186 HC_gene_2642_tx_1 1 - 388061 390186 . 1 2126 0 -chrV 390301 391085 HC_gene_2643_tx_1 5 - 390301 391085 . 1 785 0 -chrV 390301 392320 HC_gene_2643_tx_2 3 - 390301 392320 . 1 2020 0 -chrV 390301 393367 HC_gene_2643_tx_3 2 - 390301 393367 . 1 3067 0 -chrV 390301 394034 HC_gene_2643_tx_4 5 - 390301 394034 . 1 3734 0 -chrV 394162 395074 HC_gene_2644_tx_1 2 - 394162 395074 . 1 913 0 -chrV 394230 394681 HC_gene_2644_tx_3 2 - 394230 394681 . 1 452 0 -chrV 394230 395074 HC_gene_2644_tx_2 22 - 394230 395074 . 1 845 0 -chrV 394230 396272 HC_gene_2644_tx_4 6 - 394230 396272 . 1 2043 0 -chrV 394230 396272 HC_gene_2644_tx_5 1 - 394230 396272 . 2 810,1188 0,855 -chrV 394314 394930 LC_gene_2411_tx_1 1 + 394314 394930 . 1 617 0 -chrV 394950 396272 HC_gene_2644_tx_6 1 - 394950 396272 . 1 1323 0 -chrV 394974 396272 HC_gene_2644_tx_7 1 - 394974 396272 . 2 1126,113 0,1186 -chrV 396740 397802 HC_gene_2412_tx_1 1121 + 396740 397802 . 2 71,517 0,546 -chrV 396740 397802 HC_gene_2412_tx_2 2066 + 396740 397802 . 2 71,521 0,542 -chrV 396740 397802 HC_gene_2412_tx_3 108 + 396740 397802 . 2 69,511 0,552 -chrV 396740 397802 HC_gene_2412_tx_4 48 + 396740 397802 . 1 1063 0 -chrV 397300 397802 HC_gene_2412_tx_5 398 + 397300 397802 . 1 503 0 -chrV 397368 397802 HC_gene_2412_tx_6 556 + 397368 397802 . 1 435 0 -chrV 397660 398520 HC_gene_2645_tx_1 8 - 397660 398520 . 1 861 0 -chrV 397660 398850 HC_gene_2645_tx_3 2 - 397660 398850 . 1 1191 0 -chrV 397660 399233 HC_gene_2645_tx_6 9 - 397660 399233 . 1 1574 0 -chrV 397660 399233 HC_gene_2645_tx_7 1 - 397660 399233 . 2 503,167 0,1407 -chrV 397770 398520 HC_gene_2645_tx_2 13 - 397770 398520 . 1 751 0 -chrV 397770 398850 HC_gene_2645_tx_4 7 - 397770 398850 . 1 1081 0 -chrV 397770 398850 HC_gene_2645_tx_5 1 - 397770 398850 . 2 527,364 0,717 -chrV 397770 399233 HC_gene_2645_tx_8 41 - 397770 399233 . 1 1464 0 -chrV 397770 399233 HC_gene_2645_tx_9 1 - 397770 399233 . 2 731,167 0,1297 -chrV 397770 399233 HC_gene_2645_tx_10 1 - 397770 399233 . 2 873,129 0,1335 -chrV 399400 400869 HC_gene_2646_tx_1 17 - 399400 400869 . 1 1470 0 -chrV 399400 400869 HC_gene_2646_tx_2 1 - 399400 400869 . 2 210,1173 0,297 -chrV 399488 400969 LC_gene_2413_tx_1 1 + 399488 400969 . 1 1482 0 -chrV 401108 401935 HC_gene_2414_tx_1 7 + 401108 401935 . 1 828 0 -chrV 401108 401936 HC_gene_2414_tx_2 7 + 401108 401936 . 1 829 0 -chrV 401108 401937 HC_gene_2414_tx_3 7 + 401108 401937 . 1 830 0 -chrV 401108 401938 HC_gene_2414_tx_4 2 + 401108 401938 . 1 831 0 -chrV 401108 401939 HC_gene_2414_tx_5 15 + 401108 401939 . 1 832 0 -chrV 401108 401942 HC_gene_2414_tx_6 1 + 401108 401942 . 1 835 0 -chrV 401108 401947 HC_gene_2414_tx_7 2 + 401108 401947 . 1 840 0 -chrV 401108 401948 HC_gene_2414_tx_8 2 + 401108 401948 . 1 841 0 -chrV 401108 401950 HC_gene_2414_tx_9 4 + 401108 401950 . 1 843 0 -chrV 401108 401951 HC_gene_2414_tx_10 2 + 401108 401951 . 1 844 0 -chrV 401108 401952 HC_gene_2414_tx_11 1 + 401108 401952 . 1 845 0 -chrV 401108 401954 HC_gene_2414_tx_12 1 + 401108 401954 . 1 847 0 -chrV 401108 401955 HC_gene_2414_tx_13 1 + 401108 401955 . 1 848 0 -chrV 401108 401956 HC_gene_2414_tx_14 1 + 401108 401956 . 1 849 0 -chrV 401108 401957 HC_gene_2414_tx_15 1 + 401108 401957 . 1 850 0 -chrV 401108 401960 HC_gene_2414_tx_16 11 + 401108 401960 . 1 853 0 -chrV 401108 401960 HC_gene_2414_tx_17 1 + 401108 401960 . 2 178,368 0,485 -chrV 401108 401961 HC_gene_2414_tx_18 2 + 401108 401961 . 1 854 0 -chrV 401108 401962 HC_gene_2414_tx_19 6 + 401108 401962 . 1 855 0 -chrV 401108 401963 HC_gene_2414_tx_20 1 + 401108 401963 . 1 856 0 -chrV 401108 401964 HC_gene_2414_tx_21 10 + 401108 401964 . 1 857 0 -chrV 401108 401965 HC_gene_2414_tx_22 10 + 401108 401965 . 1 858 0 -chrV 401108 401966 HC_gene_2414_tx_23 12 + 401108 401966 . 1 859 0 -chrV 401108 401966 HC_gene_2414_tx_24 1 + 401108 401966 . 2 325,374 0,485 -chrV 401108 401967 HC_gene_2414_tx_25 2 + 401108 401967 . 1 860 0 -chrV 401108 401971 HC_gene_2414_tx_26 1 + 401108 401971 . 1 864 0 -chrV 401108 401973 HC_gene_2414_tx_27 1 + 401108 401973 . 1 866 0 -chrV 401108 401974 HC_gene_2414_tx_28 1 + 401108 401974 . 1 867 0 -chrV 401108 401977 HC_gene_2414_tx_29 2 + 401108 401977 . 1 870 0 -chrV 401108 401978 HC_gene_2414_tx_30 2 + 401108 401978 . 1 871 0 -chrV 401108 401979 HC_gene_2414_tx_31 2 + 401108 401979 . 1 872 0 -chrV 401108 401981 HC_gene_2414_tx_32 1 + 401108 401981 . 1 874 0 -chrV 401108 401990 HC_gene_2414_tx_33 2 + 401108 401990 . 1 883 0 -chrV 401108 402001 HC_gene_2414_tx_34 3 + 401108 402001 . 1 894 0 -chrV 401108 402002 HC_gene_2414_tx_35 1 + 401108 402002 . 1 895 0 -chrV 401108 402008 HC_gene_2414_tx_36 3 + 401108 402008 . 1 901 0 -chrV 401108 402011 HC_gene_2414_tx_37 1 + 401108 402011 . 1 904 0 -chrV 401108 402013 HC_gene_2414_tx_38 1 + 401108 402013 . 1 906 0 -chrV 401108 402017 HC_gene_2414_tx_39 1 + 401108 402017 . 1 910 0 -chrV 401108 402018 HC_gene_2414_tx_40 1 + 401108 402018 . 1 911 0 -chrV 401108 402019 HC_gene_2414_tx_41 1 + 401108 402019 . 1 912 0 -chrV 401108 402021 HC_gene_2414_tx_42 3 + 401108 402021 . 1 914 0 -chrV 401108 402022 HC_gene_2414_tx_43 1 + 401108 402022 . 1 915 0 -chrV 401108 402023 HC_gene_2414_tx_44 2 + 401108 402023 . 1 916 0 -chrV 401108 402024 HC_gene_2414_tx_45 2 + 401108 402024 . 1 917 0 -chrV 401108 402025 HC_gene_2414_tx_46 5 + 401108 402025 . 1 918 0 -chrV 401108 402026 HC_gene_2414_tx_47 1 + 401108 402026 . 1 919 0 -chrV 401108 402027 HC_gene_2414_tx_48 12 + 401108 402027 . 1 920 0 -chrV 401108 402027 HC_gene_2414_tx_49 1 + 401108 402027 . 2 752,47 0,873 -chrV 401108 402028 HC_gene_2414_tx_50 4 + 401108 402028 . 1 921 0 -chrV 401108 402028 HC_gene_2414_tx_51 1 + 401108 402028 . 2 789,70 0,851 -chrV 401108 402030 HC_gene_2414_tx_52 2 + 401108 402030 . 1 923 0 -chrV 401108 402031 HC_gene_2414_tx_53 1 + 401108 402031 . 1 924 0 -chrV 401108 402033 HC_gene_2414_tx_54 2 + 401108 402033 . 1 926 0 -chrV 401108 402034 HC_gene_2414_tx_55 5 + 401108 402034 . 1 927 0 -chrV 401108 402035 HC_gene_2414_tx_56 8 + 401108 402035 . 1 928 0 -chrV 401108 402036 HC_gene_2414_tx_57 3 + 401108 402036 . 1 929 0 -chrV 401108 402037 HC_gene_2414_tx_58 1 + 401108 402037 . 1 930 0 -chrV 401108 402038 HC_gene_2414_tx_59 1 + 401108 402038 . 1 931 0 -chrV 401108 402039 HC_gene_2414_tx_60 2 + 401108 402039 . 1 932 0 -chrV 401108 402041 HC_gene_2414_tx_61 1 + 401108 402041 . 1 934 0 -chrV 401108 402042 HC_gene_2414_tx_62 2 + 401108 402042 . 1 935 0 -chrV 401108 402043 HC_gene_2414_tx_63 1 + 401108 402043 . 1 936 0 -chrV 401108 402045 HC_gene_2414_tx_64 11 + 401108 402045 . 1 938 0 -chrV 401108 402047 HC_gene_2414_tx_65 3 + 401108 402047 . 1 940 0 -chrV 401108 402048 HC_gene_2414_tx_66 4 + 401108 402048 . 1 941 0 -chrV 401108 402050 HC_gene_2414_tx_67 3 + 401108 402050 . 1 943 0 -chrV 401108 402053 HC_gene_2414_tx_68 1 + 401108 402053 . 1 946 0 -chrV 401108 402106 HC_gene_2414_tx_69 19 + 401108 402106 . 1 999 0 -chrV 401462 401935 HC_gene_2414_tx_70 1 + 401462 401935 . 1 474 0 -chrV 401462 401936 HC_gene_2414_tx_71 2 + 401462 401936 . 1 475 0 -chrV 401462 401938 HC_gene_2414_tx_72 1 + 401462 401938 . 1 477 0 -chrV 401462 401939 HC_gene_2414_tx_73 1 + 401462 401939 . 1 478 0 -chrV 401462 401942 HC_gene_2414_tx_74 1 + 401462 401942 . 1 481 0 -chrV 401462 401953 HC_gene_2414_tx_75 1 + 401462 401953 . 1 492 0 -chrV 401462 401954 HC_gene_2414_tx_76 1 + 401462 401954 . 1 493 0 -chrV 401462 401960 HC_gene_2414_tx_77 2 + 401462 401960 . 1 499 0 -chrV 401462 401962 HC_gene_2414_tx_78 1 + 401462 401962 . 1 501 0 -chrV 401462 401964 HC_gene_2414_tx_79 1 + 401462 401964 . 1 503 0 -chrV 401462 401966 HC_gene_2414_tx_80 3 + 401462 401966 . 1 505 0 -chrV 401462 401974 HC_gene_2414_tx_81 1 + 401462 401974 . 1 513 0 -chrV 401462 401978 HC_gene_2414_tx_82 1 + 401462 401978 . 1 517 0 -chrV 401462 401979 HC_gene_2414_tx_83 1 + 401462 401979 . 1 518 0 -chrV 401462 401988 HC_gene_2414_tx_84 1 + 401462 401988 . 1 527 0 -chrV 401462 401993 HC_gene_2414_tx_85 1 + 401462 401993 . 1 532 0 -chrV 401462 402001 HC_gene_2414_tx_86 1 + 401462 402001 . 1 540 0 -chrV 401462 402023 HC_gene_2414_tx_87 1 + 401462 402023 . 1 562 0 -chrV 401462 402024 HC_gene_2414_tx_88 1 + 401462 402024 . 1 563 0 -chrV 401462 402027 HC_gene_2414_tx_89 1 + 401462 402027 . 1 566 0 -chrV 401462 402028 HC_gene_2414_tx_90 1 + 401462 402028 . 1 567 0 -chrV 401462 402031 HC_gene_2414_tx_91 1 + 401462 402031 . 1 570 0 -chrV 401462 402032 HC_gene_2414_tx_92 1 + 401462 402032 . 1 571 0 -chrV 401462 402035 HC_gene_2414_tx_93 2 + 401462 402035 . 1 574 0 -chrV 401462 402038 HC_gene_2414_tx_94 4 + 401462 402038 . 1 577 0 -chrV 401462 402039 HC_gene_2414_tx_95 1 + 401462 402039 . 1 578 0 -chrV 401462 402045 HC_gene_2414_tx_96 4 + 401462 402045 . 1 584 0 -chrV 401462 402048 HC_gene_2414_tx_97 1 + 401462 402048 . 1 587 0 -chrV 401462 402106 HC_gene_2414_tx_98 2 + 401462 402106 . 1 645 0 -chrV 401631 401935 HC_gene_2414_tx_99 1 + 401631 401935 . 1 305 0 -chrV 401631 401936 HC_gene_2414_tx_100 1 + 401631 401936 . 1 306 0 -chrV 401631 401939 HC_gene_2414_tx_101 5 + 401631 401939 . 1 309 0 -chrV 401631 401955 HC_gene_2414_tx_102 1 + 401631 401955 . 1 325 0 -chrV 401631 401960 HC_gene_2414_tx_103 2 + 401631 401960 . 1 330 0 -chrV 401631 401965 HC_gene_2414_tx_104 2 + 401631 401965 . 1 335 0 -chrV 401631 401966 HC_gene_2414_tx_105 4 + 401631 401966 . 1 336 0 -chrV 401631 401967 HC_gene_2414_tx_106 2 + 401631 401967 . 1 337 0 -chrV 401631 401974 HC_gene_2414_tx_107 1 + 401631 401974 . 1 344 0 -chrV 401631 402023 HC_gene_2414_tx_108 1 + 401631 402023 . 1 393 0 -chrV 401631 402025 HC_gene_2414_tx_109 2 + 401631 402025 . 1 395 0 -chrV 401631 402027 HC_gene_2414_tx_110 1 + 401631 402027 . 1 397 0 -chrV 401631 402032 HC_gene_2414_tx_111 1 + 401631 402032 . 1 402 0 -chrV 401631 402035 HC_gene_2414_tx_112 6 + 401631 402035 . 1 405 0 -chrV 401631 402037 HC_gene_2414_tx_113 1 + 401631 402037 . 1 407 0 -chrV 401631 402045 HC_gene_2414_tx_114 3 + 401631 402045 . 1 415 0 -chrV 401631 402049 HC_gene_2414_tx_115 1 + 401631 402049 . 1 419 0 -chrV 401631 402050 HC_gene_2414_tx_116 1 + 401631 402050 . 1 420 0 -chrV 401631 402106 HC_gene_2414_tx_117 1 + 401631 402106 . 1 476 0 -chrV 401878 402136 HC_gene_2647_tx_1 3 - 401878 402136 . 1 259 0 -chrV 401878 402304 HC_gene_2647_tx_2 1 - 401878 402304 . 1 427 0 -chrV 402152 402833 MC_gene_2415_tx_1 1 + 402152 402833 . 2 54,547 0,135 -chrV 402344 402839 MC_gene_2416_tx_1 1 + 402344 402839 . 1 496 0 -chrV 402734 403313 HC_gene_2648_tx_1 16 - 402734 403313 . 1 580 0 -chrV 402734 403451 HC_gene_2648_tx_2 25 - 402734 403451 . 1 718 0 -chrV 402734 403527 HC_gene_2648_tx_3 20 - 402734 403527 . 1 794 0 -chrV 402734 403711 HC_gene_2648_tx_4 15 - 402734 403711 . 1 978 0 -chrV 402734 403913 HC_gene_2648_tx_5 19 - 402734 403913 . 1 1180 0 -chrV 402734 404104 HC_gene_2648_tx_6 9 - 402734 404104 . 1 1371 0 -chrV 402734 404354 HC_gene_2648_tx_7 1 - 402734 404354 . 2 725,834 0,787 -chrV 402734 404354 HC_gene_2648_tx_8 1 - 402734 404354 . 2 723,836 0,785 -chrV 402734 404411 HC_gene_2648_tx_9 1 - 402734 404411 . 2 723,886 0,792 -chrV 402734 404434 HC_gene_2648_tx_10 59 - 402734 404434 . 1 1701 0 -chrV 402734 404434 HC_gene_2648_tx_11 1 - 402734 404434 . 2 882,716 0,985 -chrV 402734 404434 HC_gene_2648_tx_12 1 - 402734 404434 . 2 1000,608 0,1093 -chrV 402734 404434 HC_gene_2648_tx_13 1 - 402734 404434 . 2 648,945 0,756 -chrV 402734 404434 HC_gene_2648_tx_14 1 - 402734 404434 . 2 723,896 0,805 -chrV 402734 404434 HC_gene_2648_tx_15 1 - 402734 404434 . 2 412,1224 0,477 -chrV 402734 404434 HC_gene_2648_tx_16 1 - 402734 404434 . 2 723,884 0,817 -chrV 402734 404434 HC_gene_2648_tx_17 1 - 402734 404434 . 2 630,1022 0,679 -chrV 402809 403313 HC_gene_2648_tx_18 17 - 402809 403313 . 1 505 0 -chrV 402809 403451 HC_gene_2648_tx_19 11 - 402809 403451 . 1 643 0 -chrV 402809 403527 HC_gene_2648_tx_20 20 - 402809 403527 . 1 719 0 -chrV 402809 403711 HC_gene_2648_tx_21 5 - 402809 403711 . 1 903 0 -chrV 402809 403913 HC_gene_2648_tx_22 10 - 402809 403913 . 1 1105 0 -chrV 402809 403940 HC_gene_2648_tx_23 1 - 402809 403940 . 2 446,633 0,499 -chrV 402809 404104 HC_gene_2648_tx_24 4 - 402809 404104 . 1 1296 0 -chrV 402809 404104 HC_gene_2648_tx_25 1 - 402809 404104 . 2 693,531 0,765 -chrV 402809 404434 HC_gene_2648_tx_26 46 - 402809 404434 . 1 1626 0 -chrV 402809 404434 HC_gene_2648_tx_27 1 - 402809 404434 . 2 1165,394 0,1232 -chrV 404625 406681 HC_gene_2417_tx_1 2 + 404625 406681 . 1 2057 0 -chrV 404625 406814 HC_gene_2417_tx_2 23 + 404625 406814 . 1 2190 0 -chrV 404625 406814 HC_gene_2417_tx_3 1 + 404625 406814 . 2 1618,520 0,1670 -chrV 405824 406814 HC_gene_2417_tx_4 5 + 405824 406814 . 1 991 0 -chrV 406394 406681 HC_gene_2417_tx_5 1 + 406394 406681 . 1 288 0 -chrV 406394 406814 HC_gene_2417_tx_6 11 + 406394 406814 . 1 421 0 -chrV 406558 406814 HC_gene_2417_tx_7 9 + 406558 406814 . 1 257 0 -chrV 406763 409104 HC_gene_2649_tx_1 3 - 406763 409104 . 1 2342 0 -chrV 406763 409104 HC_gene_2649_tx_2 1 - 406763 409104 . 2 1452,731 0,1611 -chrV 406998 407950 HC_gene_2649_tx_10 23 - 406998 407950 . 1 953 0 -chrV 406998 408701 HC_gene_2649_tx_3 5 - 406998 408701 . 1 1704 0 -chrV 406998 409104 HC_gene_2649_tx_4 49 - 406998 409104 . 1 2107 0 -chrV 406998 409104 HC_gene_2649_tx_5 1 - 406998 409104 . 2 1109,180 0,1927 -chrV 406998 409104 HC_gene_2649_tx_6 1 - 406998 409104 . 2 895,1154 0,953 -chrV 406998 409104 HC_gene_2649_tx_7 1 - 406998 409104 . 2 592,1191 0,916 -chrV 406998 409104 HC_gene_2649_tx_8 1 - 406998 409104 . 2 895,1130 0,977 -chrV 407086 407950 HC_gene_2649_tx_11 2 - 407086 407950 . 1 865 0 -chrV 407086 409104 HC_gene_2649_tx_9 3 - 407086 409104 . 1 2019 0 -chrV 407148 409235 LC_gene_2418_tx_1 1 + 407148 409235 . 1 2088 0 -chrV 408248 409104 HC_gene_2649_tx_12 2 - 408248 409104 . 1 857 0 -chrV 409180 410064 MC_gene_2650_tx_1 1 - 409180 410064 . 1 885 0 -chrV 409700 410121 HC_gene_2419_tx_1 3 + 409700 410121 . 1 422 0 -chrV 409700 412839 HC_gene_2419_tx_2 1 + 409700 412839 . 2 2572,24 0,3116 -chrV 409700 412839 HC_gene_2419_tx_3 1 + 409700 412839 . 1 3140 0 -chrV 409700 413013 HC_gene_2419_tx_4 23 + 409700 413013 . 1 3314 0 -chrV 410244 413013 HC_gene_2419_tx_5 2 + 410244 413013 . 1 2770 0 -chrV 410573 413013 HC_gene_2419_tx_6 2 + 410573 413013 . 1 2441 0 -chrV 410637 413013 HC_gene_2419_tx_7 3 + 410637 413013 . 1 2377 0 -chrV 410896 413013 HC_gene_2419_tx_8 8 + 410896 413013 . 1 2118 0 -chrV 410896 413013 HC_gene_2419_tx_9 1 + 410896 413013 . 2 1322,701 0,1417 -chrV 411182 413013 HC_gene_2419_tx_10 7 + 411182 413013 . 1 1832 0 -chrV 411182 413013 HC_gene_2419_tx_11 1 + 411182 413013 . 2 913,812 0,1020 -chrV 411490 413096 LC_gene_2651_tx_1 1 - 411490 413096 . 1 1607 0 -chrV 411546 412839 HC_gene_2419_tx_12 1 + 411546 412839 . 1 1294 0 -chrV 411546 413013 HC_gene_2419_tx_13 4 + 411546 413013 . 1 1468 0 -chrV 411666 412839 HC_gene_2419_tx_14 1 + 411666 412839 . 1 1174 0 -chrV 411666 413013 HC_gene_2419_tx_15 15 + 411666 413013 . 1 1348 0 -chrV 411846 412839 HC_gene_2419_tx_16 1 + 411846 412839 . 2 156,727 0,267 -chrV 411846 413013 HC_gene_2419_tx_17 17 + 411846 413013 . 1 1168 0 -chrV 411959 412839 HC_gene_2419_tx_18 1 + 411959 412839 . 1 881 0 -chrV 411959 413013 HC_gene_2419_tx_19 22 + 411959 413013 . 1 1055 0 -chrV 412061 413013 HC_gene_2419_tx_20 9 + 412061 413013 . 1 953 0 -chrV 412184 412839 HC_gene_2419_tx_22 1 + 412184 412839 . 1 656 0 -chrV 412184 413013 HC_gene_2419_tx_21 10 + 412184 413013 . 1 830 0 -chrV 412617 412839 HC_gene_2419_tx_23 1 + 412617 412839 . 1 223 0 -chrV 412617 413013 HC_gene_2419_tx_24 18 + 412617 413013 . 1 397 0 -chrV 413246 413707 HC_gene_2652_tx_1 29 - 413246 413707 . 1 462 0 -chrV 413246 413957 HC_gene_2652_tx_2 37 - 413246 413957 . 1 712 0 -chrV 413246 414041 HC_gene_2652_tx_3 17 - 413246 414041 . 1 796 0 -chrV 413246 414095 HC_gene_2652_tx_4 2 - 413246 414095 . 1 850 0 -chrV 413246 414207 HC_gene_2652_tx_5 143 - 413246 414207 . 1 962 0 -chrV 413250 413985 LC_gene_2420_tx_1 1 + 413250 413985 . 1 736 0 -chrV 414463 415674 HC_gene_2421_tx_1 66 + 414463 415674 . 1 1212 0 -chrV 414463 415674 HC_gene_2421_tx_2 1 + 414463 415674 . 2 198,939 0,273 -chrV 414463 415674 HC_gene_2421_tx_3 1 + 414463 415674 . 2 271,658 0,554 -chrV 414463 415674 HC_gene_2421_tx_4 1 + 414463 415674 . 2 240,908 0,304 -chrV 414463 415674 HC_gene_2421_tx_5 1 + 414463 415674 . 2 156,981 0,231 -chrV 414463 415753 HC_gene_2421_tx_6 1 + 414463 415753 . 2 430,715 0,576 -chrV 414463 415753 HC_gene_2421_tx_7 13 + 414463 415753 . 1 1291 0 -chrV 414463 415753 HC_gene_2421_tx_8 1 + 414463 415753 . 2 580,497 0,794 -chrV 414463 415884 HC_gene_2421_tx_9 1 + 414463 415884 . 1 1422 0 -chrV 415600 416507 LC_gene_2653_tx_1 1 - 415600 416507 . 1 908 0 -chrV 415857 416598 HC_gene_2422_tx_1 23 + 415857 416598 . 1 742 0 -chrV 415857 416598 HC_gene_2422_tx_2 1 + 415857 416598 . 2 178,487 0,255 -chrV 416123 416598 HC_gene_2422_tx_3 1 + 416123 416598 . 1 476 0 -chrV 416756 417189 HC_gene_2423_tx_1 2 + 416756 417189 . 1 434 0 -chrV 416756 417279 HC_gene_2423_tx_2 8 + 416756 417279 . 1 524 0 -chrV 420142 420987 HC_gene_2424_tx_1 5 + 420142 420987 . 1 846 0 -chrV 420895 421979 HC_gene_2654_tx_1 13 - 420895 421979 . 1 1085 0 -chrV 420895 422123 HC_gene_2654_tx_2 8 - 420895 422123 . 1 1229 0 -chrV 420895 422514 HC_gene_2654_tx_3 39 - 420895 422514 . 1 1620 0 -chrV 420895 422514 HC_gene_2654_tx_4 1 - 420895 422514 . 2 67,1511 0,109 -chrV 423569 424456 HC_gene_2425_tx_1 227 + 423569 424456 . 2 22,505 0,383 -chrV 423569 424456 HC_gene_2425_tx_2 103 + 423569 424456 . 1 888 0 -chrV 423992 424456 HC_gene_2425_tx_3 1972 + 423992 424456 . 1 465 0 -chrV 424117 424456 HC_gene_2425_tx_4 169 + 424117 424456 . 1 340 0 -chrV 424350 425431 HC_gene_2655_tx_1 2 - 424350 425431 . 1 1082 0 -chrV 424547 425431 HC_gene_2655_tx_2 1 - 424547 425431 . 1 885 0 -chrV 424695 425133 HC_gene_2426_tx_1 115 + 424695 425133 . 1 439 0 -chrV 424774 425133 HC_gene_2426_tx_2 4 + 424774 425133 . 1 360 0 -chrV 425053 425431 HC_gene_2655_tx_3 14 - 425053 425431 . 1 379 0 -chrV 425614 426294 LC_gene_2427_tx_1 1 + 425614 426294 . 1 681 0 -chrV 428015 428611 MC_gene_2656_tx_1 1 - 428015 428611 . 1 597 0 -chrV 428748 429919 MC_gene_2657_tx_1 1 - 428748 429919 . 1 1172 0 -chrV 428879 430724 MC_gene_2658_tx_1 1 - 428879 430724 . 1 1846 0 -chrV 429736 430412 MC_gene_2658_tx_2 1 - 429736 430412 . 1 677 0 -chrV 430564 431140 MC_gene_2428_tx_1 1 + 430564 431140 . 1 577 0 -chrV 430790 431061 MC_gene_2428_tx_2 1 + 430790 431061 . 1 272 0 -chrV 431331 432214 HC_gene_2659_tx_1 1 - 431331 432214 . 1 884 0 -chrV 432425 434059 HC_gene_2429_tx_1 5 + 432425 434059 . 1 1635 0 -chrV 432425 434289 HC_gene_2429_tx_2 16 + 432425 434289 . 2 247,1093 0,772 -chrV 432425 434289 HC_gene_2429_tx_3 3 + 432425 434289 . 1 1865 0 -chrV 432425 434289 HC_gene_2429_tx_4 1 + 432425 434289 . 3 247,250,470 0,772,1395 -chrV 432425 434380 HC_gene_2429_tx_5 86 + 432425 434380 . 2 247,1184 0,772 -chrV 432425 434380 HC_gene_2429_tx_6 1 + 432425 434380 . 3 247,275,588 0,772,1368 -chrV 432425 434380 HC_gene_2429_tx_7 3 + 432425 434380 . 1 1956 0 -chrV 432425 434380 HC_gene_2429_tx_8 1 + 432425 434380 . 2 247,1233 0,723 -chrV 432425 434380 HC_gene_2429_tx_9 1 + 432425 434380 . 2 223,1217 0,739 -chrV 432425 434380 HC_gene_2429_tx_10 1 + 432425 434380 . 3 247,354,653 0,772,1303 -chrV 432425 434380 HC_gene_2429_tx_11 1 + 432425 434380 . 3 247,580,473 0,772,1483 -chrV 432425 434380 HC_gene_2429_tx_12 1 + 432425 434380 . 3 247,849,184 0,772,1772 -chrV 432429 432809 LC_gene_2660_tx_1 1 - 432429 432809 . 1 381 0 -chrV 432672 434289 HC_gene_2429_tx_13 1 + 432672 434289 . 1 1618 0 -chrV 433089 434380 HC_gene_2429_tx_14 1 + 433089 434380 . 2 43,530 0,762 -chrV 433134 434059 HC_gene_2429_tx_15 1 + 433134 434059 . 1 926 0 -chrV 433134 434289 HC_gene_2429_tx_16 3 + 433134 434289 . 1 1156 0 -chrV 433134 434289 HC_gene_2429_tx_17 1 + 433134 434289 . 2 533,470 0,686 -chrV 433134 434380 HC_gene_2429_tx_18 1 + 433134 434380 . 2 136,1042 0,205 -chrV 433134 434380 HC_gene_2429_tx_19 21 + 433134 434380 . 1 1247 0 -chrV 433134 434380 HC_gene_2429_tx_20 1 + 433134 434380 . 2 509,381 0,866 -chrV 433134 434380 HC_gene_2429_tx_21 1 + 433134 434380 . 2 367,487 0,760 -chrV 433134 434380 HC_gene_2429_tx_22 1 + 433134 434380 . 2 430,435 0,812 -chrV 433202 434059 HC_gene_2429_tx_23 1 + 433202 434059 . 1 858 0 -chrV 433202 434289 HC_gene_2429_tx_24 5 + 433202 434289 . 1 1088 0 -chrV 433202 434289 HC_gene_2429_tx_25 1 + 433202 434289 . 2 201,596 0,492 -chrV 433202 434380 HC_gene_2429_tx_26 18 + 433202 434380 . 1 1179 0 -chrV 433202 434380 HC_gene_2429_tx_27 1 + 433202 434380 . 2 309,454 0,725 -chrV 433202 434380 HC_gene_2429_tx_28 1 + 433202 434380 . 2 500,530 0,649 -chrV 433421 434059 HC_gene_2429_tx_37 1 + 433421 434059 . 1 639 0 -chrV 433421 434289 HC_gene_2429_tx_29 1 + 433421 434289 . 1 869 0 -chrV 433421 434380 HC_gene_2429_tx_30 15 + 433421 434380 . 1 960 0 -chrV 433421 434380 HC_gene_2429_tx_31 1 + 433421 434380 . 2 86,561 0,399 -chrV 433421 434380 HC_gene_2429_tx_32 1 + 433421 434380 . 2 183,687 0,273 -chrV 433581 434059 HC_gene_2429_tx_38 2 + 433581 434059 . 1 479 0 -chrV 433581 434289 HC_gene_2429_tx_33 7 + 433581 434289 . 1 709 0 -chrV 433581 434380 HC_gene_2429_tx_34 33 + 433581 434380 . 1 800 0 -chrV 433681 434380 HC_gene_2429_tx_35 11 + 433681 434380 . 1 700 0 -chrV 433681 434380 HC_gene_2429_tx_36 1 + 433681 434380 . 2 105,435 0,265 -chrV 433837 434289 HC_gene_2429_tx_39 15 + 433837 434289 . 1 453 0 -chrV 433837 434380 HC_gene_2429_tx_40 130 + 433837 434380 . 1 544 0 -chrV 433837 434380 HC_gene_2429_tx_41 1 + 433837 434380 . 2 276,172 0,372 -chrV 433940 434289 HC_gene_2429_tx_44 15 + 433940 434289 . 1 350 0 -chrV 433940 434380 HC_gene_2429_tx_42 207 + 433940 434380 . 1 441 0 -chrV 433940 434380 HC_gene_2429_tx_43 1 + 433940 434380 . 2 321,61 0,380 -chrV 434360 434696 MC_gene_2661_tx_1 1 - 434360 434696 . 1 337 0 -chrV 434795 435280 LC_gene_2430_tx_1 1 + 434795 435280 . 1 486 0 -chrV 434965 435609 HC_gene_2662_tx_1 9 - 434965 435609 . 1 645 0 -chrV 435153 435609 HC_gene_2662_tx_2 6 - 435153 435609 . 1 457 0 -chrV 435986 436427 LC_gene_2431_tx_1 1 + 435986 436427 . 1 442 0 -chrV 436303 437844 HC_gene_2663_tx_1 1 - 436303 437844 . 1 1542 0 -chrV 436427 437475 HC_gene_2663_tx_3 1 - 436427 437475 . 1 1049 0 -chrV 436427 437844 HC_gene_2663_tx_2 1 - 436427 437844 . 1 1418 0 -chrV 436756 437191 LC_gene_2432_tx_1 1 + 436756 437191 . 1 436 0 -chrV 436959 437475 HC_gene_2663_tx_4 1 - 436959 437475 . 1 517 0 -chrV 436968 437844 HC_gene_2664_tx_1 1 - 436968 437844 . 1 877 0 -chrV 436971 437475 HC_gene_2663_tx_5 2 - 436971 437475 . 1 505 0 -chrV 436971 437844 HC_gene_2664_tx_2 1 - 436971 437844 . 1 874 0 -chrV 436973 437844 HC_gene_2664_tx_3 1 - 436973 437844 . 1 872 0 -chrV 436982 437844 HC_gene_2664_tx_4 2 - 436982 437844 . 1 863 0 -chrV 436984 437844 HC_gene_2664_tx_5 1 - 436984 437844 . 1 861 0 -chrV 436991 437844 HC_gene_2664_tx_6 2 - 436991 437844 . 1 854 0 -chrV 436998 437998 HC_gene_2664_tx_7 1 - 436998 437998 . 1 1001 0 -chrV 437018 437475 HC_gene_2663_tx_6 1 - 437018 437475 . 1 458 0 -chrV 437021 437844 HC_gene_2664_tx_8 1 - 437021 437844 . 1 824 0 -chrV 437024 437475 HC_gene_2663_tx_7 1 - 437024 437475 . 1 452 0 -chrV 437024 437844 HC_gene_2664_tx_9 2 - 437024 437844 . 1 821 0 -chrV 437025 437844 HC_gene_2664_tx_10 1 - 437025 437844 . 1 820 0 -chrV 437026 437844 HC_gene_2664_tx_11 1 - 437026 437844 . 1 819 0 -chrV 437028 437475 HC_gene_2663_tx_8 1 - 437028 437475 . 1 448 0 -chrV 437028 437844 HC_gene_2664_tx_12 1 - 437028 437844 . 1 817 0 -chrV 437028 437998 HC_gene_2664_tx_13 1 - 437028 437998 . 1 971 0 -chrV 437030 437844 HC_gene_2664_tx_14 2 - 437030 437844 . 1 815 0 -chrV 437100 437844 HC_gene_2664_tx_15 2 - 437100 437844 . 1 745 0 -chrV 437105 437844 HC_gene_2664_tx_16 1 - 437105 437844 . 1 740 0 -chrV 437106 437844 HC_gene_2664_tx_17 1 - 437106 437844 . 1 739 0 -chrV 437111 437475 HC_gene_2663_tx_9 1 - 437111 437475 . 1 365 0 -chrV 437114 437844 HC_gene_2664_tx_18 1 - 437114 437844 . 1 731 0 -chrV 437115 437844 HC_gene_2664_tx_19 2 - 437115 437844 . 1 730 0 -chrV 437116 437844 HC_gene_2664_tx_20 1 - 437116 437844 . 1 729 0 -chrV 437117 437844 HC_gene_2664_tx_21 3 - 437117 437844 . 1 728 0 -chrV 437118 437844 HC_gene_2664_tx_22 1 - 437118 437844 . 1 727 0 -chrV 437119 437844 HC_gene_2664_tx_23 1 - 437119 437844 . 1 726 0 -chrV 437120 437844 HC_gene_2664_tx_24 1 - 437120 437844 . 1 725 0 -chrV 437994 438634 MC_gene_2433_tx_1 1 + 437994 438634 . 1 641 0 -chrV 439538 441217 HC_gene_2434_tx_1 14 + 439538 441217 . 1 1680 0 -chrV 439538 441217 HC_gene_2434_tx_2 1 + 439538 441217 . 2 274,1229 0,451 -chrV 439538 441297 HC_gene_2434_tx_3 83 + 439538 441297 . 1 1760 0 -chrV 439538 441297 HC_gene_2434_tx_4 1 + 439538 441297 . 2 952,747 0,1013 -chrV 439538 441297 HC_gene_2434_tx_5 1 + 439538 441297 . 2 130,1449 0,311 -chrV 439752 441217 HC_gene_2434_tx_6 2 + 439752 441217 . 1 1466 0 -chrV 439752 441297 HC_gene_2434_tx_7 9 + 439752 441297 . 1 1546 0 -chrV 440263 441217 HC_gene_2435_tx_1 2 + 440263 441217 . 1 955 0 -chrV 440263 441297 HC_gene_2435_tx_2 13 + 440263 441297 . 1 1035 0 -chrV 440447 441217 HC_gene_2435_tx_3 6 + 440447 441217 . 1 771 0 -chrV 440447 441297 HC_gene_2435_tx_4 16 + 440447 441297 . 1 851 0 -chrV 440447 441372 HC_gene_2435_tx_5 1 + 440447 441372 . 1 926 0 -chrV 440530 441297 HC_gene_2435_tx_6 12 + 440530 441297 . 1 768 0 -chrV 440631 441217 HC_gene_2435_tx_7 4 + 440631 441217 . 1 587 0 -chrV 440631 441297 HC_gene_2435_tx_8 16 + 440631 441297 . 1 667 0 -chrV 440688 441217 HC_gene_2435_tx_9 1 + 440688 441217 . 1 530 0 -chrV 440688 441297 HC_gene_2435_tx_10 12 + 440688 441297 . 1 610 0 -chrV 441187 441509 HC_gene_2665_tx_1 1 - 441187 441509 . 1 323 0 -chrV 441187 441840 HC_gene_2665_tx_2 31 - 441187 441840 . 1 654 0 -chrV 441987 442507 MC_gene_2436_tx_1 1 + 441987 442507 . 1 521 0 -chrV 442090 442414 MC_gene_2436_tx_2 1 + 442090 442414 . 1 325 0 -chrV 442182 442502 MC_gene_2436_tx_3 1 + 442182 442502 . 1 321 0 -chrV 442602 443059 HC_gene_2437_tx_1 3 + 442602 443059 . 1 458 0 -chrV 442680 443059 HC_gene_2437_tx_2 3 + 442680 443059 . 1 380 0 -chrV 442717 443510 MC_gene_2666_tx_1 1 - 442717 443510 . 1 794 0 -chrV 443341 445391 MC_gene_2667_tx_1 1 - 443341 445391 . 1 2051 0 -chrV 449290 449917 HC_gene_2438_tx_1 16 + 449290 449917 . 1 628 0 -chrV 449290 450029 HC_gene_2438_tx_2 2 + 449290 450029 . 1 740 0 -chrV 449539 449917 HC_gene_2438_tx_3 177 + 449539 449917 . 1 379 0 -chrV 449539 450029 HC_gene_2438_tx_4 2 + 449539 450029 . 1 491 0 -chrV 449539 450175 HC_gene_2438_tx_5 2 + 449539 450175 . 1 637 0 -chrV 449693 451344 HC_gene_2668_tx_1 4 - 449693 451344 . 1 1652 0 -chrV 449693 451344 HC_gene_2668_tx_2 1 - 449693 451344 . 2 709,860 0,792 -chrV 449827 451344 HC_gene_2668_tx_3 8 - 449827 451344 . 1 1518 0 -chrV 450279 451344 HC_gene_2668_tx_4 2 - 450279 451344 . 1 1066 0 -chrV 451506 452734 HC_gene_2439_tx_1 1 + 451506 452734 . 1 1229 0 -chrV 451506 452735 HC_gene_2439_tx_2 1 + 451506 452735 . 1 1230 0 -chrV 451506 452737 HC_gene_2439_tx_3 1 + 451506 452737 . 1 1232 0 -chrV 451506 452752 HC_gene_2439_tx_4 1 + 451506 452752 . 1 1247 0 -chrV 451506 452812 HC_gene_2439_tx_5 1 + 451506 452812 . 1 1307 0 -chrV 451506 452823 HC_gene_2439_tx_6 1 + 451506 452823 . 1 1318 0 -chrV 451506 453472 HC_gene_2439_tx_7 11 + 451506 453472 . 1 1967 0 -chrV 451506 453629 HC_gene_2439_tx_8 1 + 451506 453629 . 1 2124 0 -chrV 451562 453472 HC_gene_2439_tx_9 1 + 451562 453472 . 1 1911 0 -chrV 453426 453629 HC_gene_2439_tx_10 1 + 453426 453629 . 1 204 0 -chrV 453426 455161 HC_gene_2439_tx_11 55 + 453426 455161 . 1 1736 0 -chrV 453426 455161 HC_gene_2439_tx_12 1 + 453426 455161 . 2 894,789 0,947 -chrV 453426 455161 HC_gene_2439_tx_13 1 + 453426 455161 . 2 1483,183 0,1553 -chrV 453426 455161 HC_gene_2439_tx_14 1 + 453426 455161 . 2 452,1194 0,542 -chrV 453546 455161 HC_gene_2439_tx_15 2 + 453546 455161 . 1 1616 0 -chrV 453775 455161 HC_gene_2439_tx_16 1 + 453775 455161 . 2 40,702 0,685 -chrV 453796 455161 HC_gene_2439_tx_17 11 + 453796 455161 . 1 1366 0 -chrV 453978 455161 HC_gene_2439_tx_18 6 + 453978 455161 . 1 1184 0 -chrV 454059 455161 HC_gene_2439_tx_19 8 + 454059 455161 . 1 1103 0 -chrV 454386 455161 HC_gene_2439_tx_20 18 + 454386 455161 . 1 776 0 -chrV 454386 455161 HC_gene_2439_tx_21 1 + 454386 455161 . 2 543,172 0,604 -chrV 455056 455714 HC_gene_2669_tx_1 2 - 455056 455714 . 1 659 0 -chrV 455056 456065 HC_gene_2669_tx_2 43 - 455056 456065 . 1 1010 0 -chrV 456260 457715 HC_gene_2440_tx_1 11 + 456260 457715 . 1 1456 0 -chrV 456260 457715 HC_gene_2440_tx_2 1 + 456260 457715 . 2 810,553 0,903 -chrV 456260 457768 HC_gene_2440_tx_3 24 + 456260 457768 . 1 1509 0 -chrV 456541 457715 HC_gene_2440_tx_4 3 + 456541 457715 . 1 1175 0 -chrV 457687 457945 HC_gene_2670_tx_1 2 - 457687 457945 . 1 259 0 -chrV 457687 459182 HC_gene_2670_tx_2 6 - 457687 459182 . 1 1496 0 -chrV 457687 459386 HC_gene_2670_tx_3 1 - 457687 459386 . 1 1700 0 -chrV 457687 460003 HC_gene_2670_tx_4 3 - 457687 460003 . 1 2317 0 -chrV 457687 460231 HC_gene_2670_tx_5 3 - 457687 460231 . 1 2545 0 -chrV 457940 460479 MC_gene_2441_tx_1 1 + 457940 460479 . 2 1020,1378 0,1162 -chrV 458156 459841 MC_gene_2441_tx_2 1 + 458156 459841 . 1 1686 0 -chrV 460348 460963 HC_gene_2671_tx_1 37 - 460348 460963 . 1 616 0 -chrV 460348 461262 HC_gene_2671_tx_2 21 - 460348 461262 . 1 915 0 -chrV 460348 461454 HC_gene_2671_tx_3 14 - 460348 461454 . 1 1107 0 -chrV 460348 461578 HC_gene_2671_tx_4 6 - 460348 461578 . 1 1231 0 -chrV 460348 461578 HC_gene_2671_tx_5 1 - 460348 461578 . 2 918,229 0,1002 -chrV 460348 461657 HC_gene_2671_tx_6 5 - 460348 461657 . 1 1310 0 -chrV 460348 461783 HC_gene_2671_tx_7 79 - 460348 461783 . 1 1436 0 -chrV 460348 461783 HC_gene_2671_tx_8 1 - 460348 461783 . 2 786,193 0,1243 -chrV 460348 461783 HC_gene_2671_tx_9 1 - 460348 461783 . 2 1058,268 0,1168 -chrV 460348 461783 HC_gene_2671_tx_10 1 - 460348 461783 . 2 850,479 0,957 -chrV 460537 461089 MC_gene_2442_tx_1 1 + 460537 461089 . 1 553 0 -chrV 461460 462348 MC_gene_2443_tx_1 1 + 461460 462348 . 1 889 0 -chrV 462396 462951 HC_gene_2444_tx_1 10 + 462396 462951 . 1 556 0 -chrV 462543 462951 HC_gene_2444_tx_2 271 + 462543 462951 . 1 409 0 -chrV 462861 464883 HC_gene_2672_tx_1 19 - 462861 464883 . 1 2023 0 -chrV 462861 464883 HC_gene_2672_tx_2 1 - 462861 464883 . 2 1005,971 0,1052 -chrV 465113 466155 HC_gene_2445_tx_1 51 + 465113 466155 . 1 1043 0 -chrV 465113 466155 HC_gene_2445_tx_2 1 + 465113 466155 . 2 347,654 0,389 -chrV 465113 466224 HC_gene_2445_tx_3 186 + 465113 466224 . 1 1112 0 -chrV 465113 466224 HC_gene_2445_tx_4 1 + 465113 466224 . 2 943,103 0,1009 -chrV 465113 466224 HC_gene_2445_tx_5 1 + 465113 466224 . 2 302,720 0,392 -chrV 465113 466224 HC_gene_2445_tx_6 1 + 465113 466224 . 2 978,56 0,1056 -chrV 465113 466224 HC_gene_2445_tx_7 1 + 465113 466224 . 2 287,686 0,426 -chrV 465113 466224 HC_gene_2445_tx_8 1 + 465113 466224 . 2 229,681 0,431 -chrV 465113 466341 HC_gene_2445_tx_9 6 + 465113 466341 . 1 1229 0 -chrV 465319 466155 HC_gene_2445_tx_10 2 + 465319 466155 . 1 837 0 -chrV 465319 466224 HC_gene_2445_tx_11 21 + 465319 466224 . 1 906 0 -chrV 465319 466341 HC_gene_2445_tx_12 2 + 465319 466341 . 1 1023 0 -chrV 465533 466155 HC_gene_2445_tx_13 8 + 465533 466155 . 1 623 0 -chrV 465533 466224 HC_gene_2445_tx_14 17 + 465533 466224 . 1 692 0 -chrV 465823 466155 HC_gene_2445_tx_15 2 + 465823 466155 . 1 333 0 -chrV 465823 466224 HC_gene_2445_tx_16 28 + 465823 466224 . 1 402 0 -chrV 466128 466663 HC_gene_2673_tx_1 8 - 466128 466663 . 1 536 0 -chrV 466128 467270 HC_gene_2673_tx_3 3 - 466128 467270 . 1 1143 0 -chrV 466128 467548 HC_gene_2673_tx_4 17 - 466128 467548 . 1 1421 0 -chrV 466188 466663 HC_gene_2673_tx_2 1 - 466188 466663 . 1 476 0 -chrV 466188 467270 HC_gene_2673_tx_5 3 - 466188 467270 . 1 1083 0 -chrV 466188 467548 HC_gene_2673_tx_6 4 - 466188 467548 . 1 1361 0 -chrV 467686 467955 MC_gene_2674_tx_1 1 - 467686 467955 . 1 270 0 -chrV 467725 468394 HC_gene_2446_tx_1 4 + 467725 468394 . 1 670 0 -chrV 467725 468981 HC_gene_2446_tx_2 10 + 467725 468981 . 1 1257 0 -chrV 468188 468981 HC_gene_2446_tx_3 6 + 468188 468981 . 1 794 0 -chrV 468289 469213 HC_gene_2675_tx_1 4 - 468289 469213 . 1 925 0 -chrV 468337 468981 HC_gene_2446_tx_4 51 + 468337 468981 . 1 645 0 -chrV 468631 468981 HC_gene_2446_tx_5 17 + 468631 468981 . 1 351 0 -chrV 469088 469689 MC_gene_2447_tx_1 1 + 469088 469689 . 1 602 0 -chrV 469604 471734 HC_gene_2676_tx_1 6 - 469604 471734 . 1 2131 0 -chrV 469604 472076 HC_gene_2676_tx_2 4 - 469604 472076 . 1 2473 0 -chrV 469604 472076 HC_gene_2676_tx_3 1 - 469604 472076 . 2 1510,257 0,2216 -chrV 469604 472377 HC_gene_2676_tx_4 3 - 469604 472377 . 1 2774 0 -chrV 469604 472483 HC_gene_2676_tx_5 15 - 469604 472483 . 1 2880 0 -chrV 469604 473582 HC_gene_2676_tx_6 1 - 469604 473582 . 1 3979 0 -chrV 469604 474768 HC_gene_2676_tx_7 1 - 469604 474768 . 1 5165 0 -chrV 472602 472908 HC_gene_2676_tx_8 3 - 472602 472908 . 1 307 0 -chrV 472602 473294 HC_gene_2676_tx_9 3 - 472602 473294 . 1 693 0 -chrV 472602 473461 HC_gene_2676_tx_10 5 - 472602 473461 . 1 860 0 -chrV 472602 473582 HC_gene_2676_tx_11 5 - 472602 473582 . 1 981 0 -chrV 472602 473758 HC_gene_2676_tx_12 1 - 472602 473758 . 1 1157 0 -chrV 472602 473954 HC_gene_2676_tx_13 1 - 472602 473954 . 1 1353 0 -chrV 472602 473987 HC_gene_2676_tx_14 1 - 472602 473987 . 1 1386 0 -chrV 472602 473995 HC_gene_2676_tx_15 1 - 472602 473995 . 1 1394 0 -chrV 472602 474007 HC_gene_2676_tx_16 1 - 472602 474007 . 1 1406 0 -chrV 472602 474017 HC_gene_2676_tx_17 13 - 472602 474017 . 1 1416 0 -chrV 472602 474367 HC_gene_2676_tx_18 1 - 472602 474367 . 1 1766 0 -chrV 472602 474760 HC_gene_2676_tx_19 1 - 472602 474760 . 1 2159 0 -chrV 472602 474768 HC_gene_2676_tx_20 4 - 472602 474768 . 1 2167 0 -chrV 472602 474790 HC_gene_2676_tx_21 1 - 472602 474790 . 1 2189 0 -chrV 472602 474829 HC_gene_2676_tx_22 1 - 472602 474829 . 1 2228 0 -chrV 472602 475239 HC_gene_2676_tx_23 1 - 472602 475239 . 1 2638 0 -chrV 475015 476296 HC_gene_2448_tx_1 35 + 475015 476296 . 1 1282 0 -chrV 475015 476296 HC_gene_2448_tx_2 1 + 475015 476296 . 2 702,535 0,747 -chrV 475213 476296 HC_gene_2448_tx_3 7 + 475213 476296 . 1 1084 0 -chrV 475693 476296 HC_gene_2448_tx_4 13 + 475693 476296 . 1 604 0 -chrV 475813 476296 HC_gene_2448_tx_5 16 + 475813 476296 . 1 484 0 -chrV 476191 476642 HC_gene_2677_tx_1 20 - 476191 476642 . 1 452 0 -chrV 476191 476642 HC_gene_2677_tx_2 1 - 476191 476642 . 2 91,253 0,199 -chrV 476191 476951 HC_gene_2677_tx_3 26 - 476191 476951 . 1 761 0 -chrV 476191 476951 HC_gene_2677_tx_4 1 - 476191 476951 . 2 263,366 0,395 -chrV 476191 477059 HC_gene_2677_tx_5 15 - 476191 477059 . 1 869 0 -chrV 476191 477200 HC_gene_2677_tx_6 10 - 476191 477200 . 1 1010 0 -chrV 476191 477850 HC_gene_2677_tx_7 4 - 476191 477850 . 1 1660 0 -chrV 476191 480127 HC_gene_2677_tx_8 1 - 476191 480127 . 1 3937 0 -chrV 476191 482857 HC_gene_2677_tx_9 1 - 476191 482857 . 1 6667 0 -chrV 482996 483336 MC_gene_2449_tx_1 1 + 482996 483336 . 1 341 0 -chrV 483209 484173 HC_gene_2678_tx_1 10 - 483209 484173 . 1 965 0 -chrV 483209 484358 HC_gene_2678_tx_2 145 - 483209 484358 . 1 1150 0 -chrV 484327 484753 MC_gene_2450_tx_1 1 + 484327 484753 . 1 427 0 -chrV 484771 487229 HC_gene_2451_tx_1 5 + 484771 487229 . 1 2459 0 -chrV 487517 488144 MC_gene_2452_tx_1 1 + 487517 488144 . 1 628 0 -chrV 487860 488533 MC_gene_2679_tx_1 1 - 487860 488533 . 1 674 0 -chrV 488713 490412 HC_gene_2680_tx_1 5 - 488713 490412 . 1 1700 0 -chrV 488713 490782 HC_gene_2680_tx_2 11 - 488713 490782 . 1 2070 0 -chrV 488713 490782 HC_gene_2680_tx_3 1 - 488713 490782 . 2 98,1884 0,186 -chrV 490080 491183 HC_gene_2453_tx_1 1 + 490080 491183 . 2 492,566 0,538 -chrV 490080 491526 HC_gene_2453_tx_2 1 + 490080 491526 . 2 662,710 0,737 -chrV 490080 491526 HC_gene_2453_tx_3 1 + 490080 491526 . 1 1447 0 -chrV 491365 491718 HC_gene_2681_tx_1 31 - 491365 491718 . 1 354 0 -chrV 491365 492136 HC_gene_2681_tx_2 300 - 491365 492136 . 1 772 0 -chrV 491799 492240 LC_gene_2454_tx_1 1 + 491799 492240 . 1 442 0 -chrV 492629 498165 LC_gene_2682_tx_1 1 - 492629 498165 . 2 3340,2137 0,3400 -chrV 497654 499143 MC_gene_2455_tx_1 1 + 497654 499143 . 1 1490 0 -chrV 498096 498837 MC_gene_2683_tx_1 1 - 498096 498837 . 1 742 0 -chrV 498113 498655 MC_gene_2683_tx_2 1 - 498113 498655 . 1 543 0 -chrV 498633 499060 MC_gene_2455_tx_2 1 + 498633 499060 . 1 428 0 -chrV 498991 500396 HC_gene_2684_tx_1 2 - 498991 500396 . 1 1406 0 -chrV 499074 499666 HC_gene_2684_tx_5 14 - 499074 499666 . 1 593 0 -chrV 499074 500396 HC_gene_2684_tx_2 34 - 499074 500396 . 1 1323 0 -chrV 499074 500396 HC_gene_2684_tx_3 1 - 499074 500396 . 2 667,595 0,728 -chrV 499074 500396 HC_gene_2684_tx_4 1 - 499074 500396 . 2 643,588 0,735 -chrV 500445 502933 HC_gene_2685_tx_1 1 - 500445 502933 . 1 2489 0 -chrV 500562 501780 HC_gene_2685_tx_5 3 - 500562 501780 . 1 1219 0 -chrV 500562 502933 HC_gene_2685_tx_2 11 - 500562 502933 . 1 2372 0 -chrV 500562 502933 HC_gene_2685_tx_3 1 - 500562 502933 . 2 2035,276 0,2096 -chrV 500562 502933 HC_gene_2685_tx_4 1 - 500562 502933 . 2 1775,513 0,1859 -chrV 500829 501535 LC_gene_2456_tx_1 1 + 500829 501535 . 1 707 0 -chrV 502732 503136 MC_gene_2457_tx_1 1 + 502732 503136 . 1 405 0 -chrV 502894 503641 HC_gene_2686_tx_1 1 - 502894 503641 . 1 748 0 -chrV 502894 503789 HC_gene_2686_tx_2 3 - 502894 503789 . 1 896 0 -chrV 503041 503501 HC_gene_2686_tx_7 11 - 503041 503501 . 1 461 0 -chrV 503041 503641 HC_gene_2686_tx_3 7 - 503041 503641 . 1 601 0 -chrV 503041 503789 HC_gene_2686_tx_4 113 - 503041 503789 . 1 749 0 -chrV 503041 503789 HC_gene_2686_tx_5 1 - 503041 503789 . 2 333,376 0,373 -chrV 503041 503789 HC_gene_2686_tx_6 1 - 503041 503789 . 2 332,333 0,416 -chrV 503116 503397 MC_gene_2458_tx_1 1 + 503116 503397 . 1 282 0 -chrV 504004 504534 HC_gene_2459_tx_1 3 + 504004 504534 . 1 531 0 -chrV 504004 504982 HC_gene_2459_tx_2 4 + 504004 504982 . 1 979 0 -chrV 505089 509923 HC_gene_2460_tx_1 1 + 505089 509923 . 1 4835 0 -chrV 505208 509923 HC_gene_2460_tx_2 1 + 505208 509923 . 2 367,3573 0,1143 -chrV 508434 509923 HC_gene_2460_tx_3 6 + 508434 509923 . 1 1490 0 -chrV 509191 509923 HC_gene_2460_tx_4 3 + 509191 509923 . 1 733 0 -chrV 509796 510112 HC_gene_2687_tx_1 1 - 509796 510112 . 1 317 0 -chrV 509796 510228 HC_gene_2687_tx_2 2 - 509796 510228 . 1 433 0 -chrV 510230 512160 HC_gene_2461_tx_1 30 + 510230 512160 . 1 1931 0 -chrV 510230 512258 HC_gene_2461_tx_2 297 + 510230 512258 . 1 2029 0 -chrV 510230 512258 HC_gene_2461_tx_3 1 + 510230 512258 . 2 83,1826 0,203 -chrV 510230 512258 HC_gene_2461_tx_4 1 + 510230 512258 . 2 822,769 0,1260 -chrV 510230 512258 HC_gene_2461_tx_5 1 + 510230 512258 . 2 1863,40 0,1989 -chrV 510230 512258 HC_gene_2461_tx_6 1 + 510230 512258 . 2 301,1662 0,367 -chrV 510230 512258 HC_gene_2461_tx_7 1 + 510230 512258 . 2 783,1186 0,843 -chrV 510230 512258 HC_gene_2461_tx_8 1 + 510230 512258 . 2 1419,524 0,1505 -chrV 510230 512258 HC_gene_2461_tx_9 1 + 510230 512258 . 2 667,707 0,1322 -chrV 510360 512160 HC_gene_2461_tx_10 3 + 510360 512160 . 1 1801 0 -chrV 510360 512258 HC_gene_2461_tx_11 40 + 510360 512258 . 1 1899 0 -chrV 510360 512258 HC_gene_2461_tx_12 1 + 510360 512258 . 2 1049,800 0,1099 -chrV 510556 512160 HC_gene_2461_tx_13 1 + 510556 512160 . 1 1605 0 -chrV 510556 512258 HC_gene_2461_tx_14 1 + 510556 512258 . 2 1510,40 0,1663 -chrV 510556 512258 HC_gene_2461_tx_15 15 + 510556 512258 . 1 1703 0 -chrV 510556 512258 HC_gene_2461_tx_16 1 + 510556 512258 . 2 1481,68 0,1635 -chrV 510611 512160 HC_gene_2461_tx_17 5 + 510611 512160 . 1 1550 0 -chrV 510611 512258 HC_gene_2461_tx_18 40 + 510611 512258 . 1 1648 0 -chrV 510742 512160 HC_gene_2461_tx_19 2 + 510742 512160 . 1 1419 0 -chrV 510742 512258 HC_gene_2461_tx_20 11 + 510742 512258 . 1 1517 0 -chrV 510793 512160 HC_gene_2461_tx_21 1 + 510793 512160 . 1 1368 0 -chrV 510793 512258 HC_gene_2461_tx_22 24 + 510793 512258 . 1 1466 0 -chrV 510872 512160 HC_gene_2461_tx_23 7 + 510872 512160 . 1 1289 0 -chrV 510872 512258 HC_gene_2461_tx_24 41 + 510872 512258 . 1 1387 0 -chrV 511151 512160 HC_gene_2461_tx_25 6 + 511151 512160 . 1 1010 0 -chrV 511151 512258 HC_gene_2461_tx_26 63 + 511151 512258 . 1 1108 0 -chrV 511460 512160 HC_gene_2461_tx_27 6 + 511460 512160 . 1 701 0 -chrV 511460 512258 HC_gene_2461_tx_28 60 + 511460 512258 . 1 799 0 -chrV 511537 512160 HC_gene_2461_tx_29 5 + 511537 512160 . 1 624 0 -chrV 511537 512258 HC_gene_2461_tx_30 56 + 511537 512258 . 1 722 0 -chrV 511837 512160 HC_gene_2461_tx_31 26 + 511837 512160 . 1 324 0 -chrV 511837 512258 HC_gene_2461_tx_33 245 + 511837 512258 . 1 422 0 -chrV 511901 512160 HC_gene_2461_tx_32 1 + 511901 512160 . 1 260 0 -chrV 511901 512258 HC_gene_2461_tx_34 41 + 511901 512258 . 1 358 0 -chrV 512443 513445 HC_gene_2462_tx_1 1 + 512443 513445 . 1 1003 0 -chrV 515493 517553 HC_gene_2463_tx_1 2 + 515493 517553 . 1 2061 0 -chrV 515493 517650 HC_gene_2463_tx_2 1 + 515493 517650 . 2 1280,781 0,1377 -chrV 516884 517544 HC_gene_2464_tx_1 1 + 516884 517544 . 1 661 0 -chrV 516884 517550 HC_gene_2464_tx_2 1 + 516884 517550 . 1 667 0 -chrV 516884 517553 HC_gene_2464_tx_3 1 + 516884 517553 . 1 670 0 -chrV 516884 517556 HC_gene_2464_tx_4 1 + 516884 517556 . 1 673 0 -chrV 516884 517557 HC_gene_2464_tx_5 1 + 516884 517557 . 1 674 0 -chrV 516884 517559 HC_gene_2464_tx_6 1 + 516884 517559 . 1 676 0 -chrV 516884 517565 HC_gene_2464_tx_7 1 + 516884 517565 . 1 682 0 -chrV 516884 517571 HC_gene_2464_tx_8 1 + 516884 517571 . 1 688 0 -chrV 516884 517574 HC_gene_2464_tx_9 1 + 516884 517574 . 1 691 0 -chrV 516884 517580 HC_gene_2464_tx_10 1 + 516884 517580 . 1 697 0 -chrV 516884 517619 HC_gene_2464_tx_11 1 + 516884 517619 . 1 736 0 -chrV 516884 517659 HC_gene_2464_tx_12 1 + 516884 517659 . 1 776 0 -chrV 516884 517667 HC_gene_2464_tx_13 1 + 516884 517667 . 1 784 0 -chrV 516884 517678 HC_gene_2464_tx_14 1 + 516884 517678 . 1 795 0 -chrV 516884 517679 HC_gene_2464_tx_15 1 + 516884 517679 . 1 796 0 -chrV 516917 517410 LC_gene_2688_tx_1 1 - 516917 517410 . 1 494 0 -chrV 517118 517547 HC_gene_2464_tx_16 1 + 517118 517547 . 1 430 0 -chrV 517118 517558 HC_gene_2464_tx_17 1 + 517118 517558 . 1 441 0 -chrV 517118 517559 HC_gene_2464_tx_18 2 + 517118 517559 . 1 442 0 -chrV 517118 517573 HC_gene_2464_tx_19 1 + 517118 517573 . 1 456 0 -chrV 517118 517576 HC_gene_2464_tx_20 1 + 517118 517576 . 1 459 0 -chrV 517118 517620 HC_gene_2464_tx_21 1 + 517118 517620 . 1 503 0 -chrV 517118 517634 HC_gene_2464_tx_22 1 + 517118 517634 . 1 517 0 -chrV 517118 517676 HC_gene_2464_tx_23 1 + 517118 517676 . 1 559 0 -chrV 517118 517679 HC_gene_2464_tx_24 1 + 517118 517679 . 1 562 0 -chrV 517118 518038 HC_gene_2464_tx_25 1 + 517118 518038 . 1 921 0 -chrV 517828 520941 HC_gene_2465_tx_1 9 + 517828 520941 . 1 3114 0 -chrV 517922 520941 HC_gene_2465_tx_2 1 + 517922 520941 . 1 3020 0 -chrV 519096 520941 HC_gene_2465_tx_3 2 + 519096 520941 . 1 1846 0 -chrV 520911 521637 HC_gene_2689_tx_1 3 - 520911 521637 . 1 727 0 -chrV 520911 522696 HC_gene_2689_tx_3 2 - 520911 522696 . 1 1786 0 -chrV 520971 521637 HC_gene_2689_tx_2 4 - 520971 521637 . 1 667 0 -chrV 520971 522696 HC_gene_2689_tx_4 22 - 520971 522696 . 1 1726 0 -chrV 520971 522696 HC_gene_2689_tx_5 1 - 520971 522696 . 2 821,813 0,913 -chrV 520971 522696 HC_gene_2689_tx_6 1 - 520971 522696 . 2 735,940 0,786 -chrV 520971 522696 HC_gene_2689_tx_7 1 - 520971 522696 . 2 764,834 0,892 -chrV 523087 525921 HC_gene_2466_tx_1 2 + 523087 525921 . 1 2835 0 -chrV 523087 525938 HC_gene_2466_tx_2 1 + 523087 525938 . 1 2852 0 -chrV 523087 525939 HC_gene_2466_tx_3 1 + 523087 525939 . 1 2853 0 -chrV 523087 525974 HC_gene_2466_tx_4 1 + 523087 525974 . 1 2888 0 -chrV 523087 525979 HC_gene_2466_tx_5 1 + 523087 525979 . 1 2893 0 -chrV 523113 525967 HC_gene_2466_tx_6 1 + 523113 525967 . 1 2855 0 -chrV 523127 525956 HC_gene_2466_tx_7 1 + 523127 525956 . 1 2830 0 -chrV 523144 525959 HC_gene_2466_tx_8 1 + 523144 525959 . 1 2816 0 -chrV 523164 525959 HC_gene_2466_tx_9 1 + 523164 525959 . 1 2796 0 -chrV 523170 525963 HC_gene_2466_tx_10 1 + 523170 525963 . 1 2794 0 -chrV 523174 525963 HC_gene_2466_tx_11 1 + 523174 525963 . 1 2790 0 -chrV 523180 525967 HC_gene_2466_tx_12 1 + 523180 525967 . 1 2788 0 -chrV 525123 525963 HC_gene_2466_tx_13 1 + 525123 525963 . 1 841 0 -chrV 525124 525921 HC_gene_2466_tx_14 1 + 525124 525921 . 1 798 0 -chrV 525124 525948 HC_gene_2466_tx_15 1 + 525124 525948 . 1 825 0 -chrV 525832 526429 MC_gene_2690_tx_1 1 - 525832 526429 . 1 598 0 -chrV 525950 526996 HC_gene_2467_tx_1 17 + 525950 526996 . 1 1047 0 -chrV 526917 527331 MC_gene_2691_tx_1 1 - 526917 527331 . 1 415 0 -chrV 526966 527734 HC_gene_2468_tx_1 2 + 526966 527734 . 1 769 0 -chrV 526966 527743 HC_gene_2468_tx_2 1 + 526966 527743 . 1 778 0 -chrV 526966 527744 HC_gene_2468_tx_3 1 + 526966 527744 . 1 779 0 -chrV 526966 527747 HC_gene_2468_tx_4 1 + 526966 527747 . 1 782 0 -chrV 526966 527759 HC_gene_2468_tx_5 1 + 526966 527759 . 1 794 0 -chrV 526966 529524 HC_gene_2468_tx_6 19 + 526966 529524 . 1 2559 0 -chrV 526966 529524 HC_gene_2468_tx_7 1 + 526966 529524 . 2 117,1044 0,1515 -chrV 526966 529524 HC_gene_2468_tx_8 1 + 526966 529524 . 2 1381,1062 0,1497 -chrV 526966 529524 HC_gene_2468_tx_9 1 + 526966 529524 . 2 1428,1067 0,1492 -chrV 526966 529690 HC_gene_2468_tx_10 1 + 526966 529690 . 2 1462,1187 0,1538 -chrV 526966 529690 HC_gene_2468_tx_11 1 + 526966 529690 . 2 1428,1187 0,1538 -chrV 529405 536079 HC_gene_2692_tx_1 2 - 529405 536079 . 1 6675 0 -chrV 529405 536079 HC_gene_2692_tx_2 1 - 529405 536079 . 4 1100,323,372,1873 0,2270,3201,4802 -chrV 534144 536079 HC_gene_2692_tx_3 4 - 534144 536079 . 1 1936 0 -chrV 535848 536186 HC_gene_2469_tx_1 4 + 535848 536186 . 1 339 0 -chrV 536299 538455 HC_gene_2470_tx_1 5 + 536299 538455 . 1 2157 0 -chrV 536299 538455 HC_gene_2470_tx_2 1 + 536299 538455 . 2 1110,978 0,1179 -chrV 536817 538455 HC_gene_2470_tx_3 1 + 536817 538455 . 1 1639 0 -chrV 538321 539283 HC_gene_2693_tx_1 38 - 538321 539283 . 1 963 0 -chrV 538321 540383 HC_gene_2693_tx_2 8 - 538321 540383 . 1 2063 0 -chrV 538321 540383 HC_gene_2693_tx_3 1 - 538321 540383 . 2 843,1096 0,967 -chrV 539229 540383 HC_gene_2693_tx_4 1 - 539229 540383 . 1 1155 0 -chrV 539231 540383 HC_gene_2693_tx_5 1 - 539231 540383 . 1 1153 0 -chrV 539232 540383 HC_gene_2693_tx_6 2 - 539232 540383 . 1 1152 0 -chrV 539232 540383 HC_gene_2693_tx_7 1 - 539232 540383 . 2 370,728 0,424 -chrV 539233 540383 HC_gene_2693_tx_8 1 - 539233 540383 . 1 1151 0 -chrV 539234 539919 HC_gene_2693_tx_38 1 - 539234 539919 . 1 686 0 -chrV 539234 540383 HC_gene_2693_tx_9 2 - 539234 540383 . 1 1150 0 -chrV 539235 539919 HC_gene_2693_tx_39 1 - 539235 539919 . 1 685 0 -chrV 539235 540383 HC_gene_2693_tx_10 1 - 539235 540383 . 1 1149 0 -chrV 539236 540383 HC_gene_2693_tx_11 1 - 539236 540383 . 1 1148 0 -chrV 539237 540383 HC_gene_2693_tx_12 1 - 539237 540383 . 1 1147 0 -chrV 539238 540383 HC_gene_2693_tx_13 2 - 539238 540383 . 1 1146 0 -chrV 539239 540383 HC_gene_2693_tx_14 3 - 539239 540383 . 1 1145 0 -chrV 539241 540383 HC_gene_2693_tx_15 1 - 539241 540383 . 1 1143 0 -chrV 539242 540383 HC_gene_2693_tx_16 4 - 539242 540383 . 1 1142 0 -chrV 539243 539919 HC_gene_2693_tx_40 1 - 539243 539919 . 1 677 0 -chrV 539243 540383 HC_gene_2693_tx_17 1 - 539243 540383 . 1 1141 0 -chrV 539249 540383 HC_gene_2693_tx_18 2 - 539249 540383 . 1 1135 0 -chrV 539251 539919 HC_gene_2693_tx_41 1 - 539251 539919 . 1 669 0 -chrV 539251 540383 HC_gene_2693_tx_19 2 - 539251 540383 . 1 1133 0 -chrV 539263 540383 HC_gene_2693_tx_20 1 - 539263 540383 . 1 1121 0 -chrV 539272 540387 HC_gene_2693_tx_21 1 - 539272 540387 . 1 1116 0 -chrV 539282 540393 HC_gene_2693_tx_22 1 - 539282 540393 . 1 1112 0 -chrV 539286 539919 HC_gene_2693_tx_42 1 - 539286 539919 . 1 634 0 -chrV 539286 540383 HC_gene_2693_tx_23 2 - 539286 540383 . 1 1098 0 -chrV 539287 539919 HC_gene_2693_tx_43 1 - 539287 539919 . 1 633 0 -chrV 539287 540383 HC_gene_2693_tx_24 3 - 539287 540383 . 1 1097 0 -chrV 539289 540383 HC_gene_2693_tx_25 2 - 539289 540383 . 1 1095 0 -chrV 539290 540383 HC_gene_2693_tx_26 2 - 539290 540383 . 1 1094 0 -chrV 539291 539919 HC_gene_2693_tx_44 1 - 539291 539919 . 1 629 0 -chrV 539291 540383 HC_gene_2693_tx_27 5 - 539291 540383 . 1 1093 0 -chrV 539292 540383 HC_gene_2693_tx_28 1 - 539292 540383 . 1 1092 0 -chrV 539293 540383 HC_gene_2693_tx_29 6 - 539293 540383 . 1 1091 0 -chrV 539294 540383 HC_gene_2693_tx_30 2 - 539294 540383 . 1 1090 0 -chrV 539295 540383 HC_gene_2693_tx_31 1 - 539295 540383 . 1 1089 0 -chrV 539296 540383 HC_gene_2693_tx_32 3 - 539296 540383 . 1 1088 0 -chrV 539297 540383 HC_gene_2693_tx_33 5 - 539297 540383 . 1 1087 0 -chrV 539298 540383 HC_gene_2693_tx_34 1 - 539298 540383 . 1 1086 0 -chrV 539299 540383 HC_gene_2693_tx_35 2 - 539299 540383 . 1 1085 0 -chrV 539300 540383 HC_gene_2693_tx_36 16 - 539300 540383 . 1 1084 0 -chrV 539300 540383 HC_gene_2693_tx_37 1 - 539300 540383 . 2 551,231 0,853 -chrV 540500 541464 HC_gene_2694_tx_1 1 - 540500 541464 . 1 965 0 -chrV 540612 541464 HC_gene_2694_tx_2 3 - 540612 541464 . 1 853 0 -chrV 540723 541576 HC_gene_2471_tx_1 3 + 540723 541576 . 1 854 0 -chrV 540786 541464 HC_gene_2694_tx_3 4 - 540786 541464 . 1 679 0 -chrV 540864 541464 HC_gene_2694_tx_4 5 - 540864 541464 . 1 601 0 -chrV 541647 545173 HC_gene_2472_tx_1 6 + 541647 545173 . 1 3527 0 -chrV 542017 545173 HC_gene_2472_tx_2 1 + 542017 545173 . 1 3157 0 -chrV 542102 542447 MC_gene_2695_tx_1 1 - 542102 542447 . 1 346 0 -chrV 542263 545173 HC_gene_2472_tx_3 2 + 542263 545173 . 1 2911 0 -chrV 542364 545173 HC_gene_2472_tx_4 1 + 542364 545173 . 1 2810 0 -chrV 542508 544651 MC_gene_2696_tx_1 1 - 542508 544651 . 1 2144 0 -chrV 542603 545173 HC_gene_2472_tx_5 1 + 542603 545173 . 2 1379,1107 0,1464 -chrV 542603 545173 HC_gene_2472_tx_6 1 + 542603 545173 . 1 2571 0 -chrV 542773 545173 HC_gene_2472_tx_7 2 + 542773 545173 . 1 2401 0 -chrV 544060 544375 MC_gene_2696_tx_2 1 - 544060 544375 . 1 316 0 -chrV 544105 545173 HC_gene_2472_tx_8 12 + 544105 545173 . 1 1069 0 -chrV 544105 545173 HC_gene_2472_tx_9 1 + 544105 545173 . 2 258,650 0,419 -chrV 544506 545035 MC_gene_2697_tx_1 1 - 544506 545035 . 1 530 0 -chrV 544595 545173 HC_gene_2472_tx_10 21 + 544595 545173 . 1 579 0 -chrV 544788 545173 HC_gene_2472_tx_11 19 + 544788 545173 . 1 386 0 -chrV 544910 545173 HC_gene_2472_tx_12 6 + 544910 545173 . 1 264 0 -chrV 545202 546591 HC_gene_2473_tx_1 15 + 545202 546591 . 1 1390 0 -chrV 545571 546591 HC_gene_2473_tx_2 1199 + 545571 546591 . 1 1021 0 -chrV 545824 546591 HC_gene_2473_tx_3 136 + 545824 546591 . 1 768 0 -chrV 545993 546591 HC_gene_2473_tx_4 402 + 545993 546591 . 1 599 0 -chrV 546229 546591 HC_gene_2473_tx_5 53 + 546229 546591 . 1 363 0 -chrV 546292 546591 HC_gene_2473_tx_6 276 + 546292 546591 . 1 300 0 -chrV 546464 547423 MC_gene_2698_tx_1 1 - 546464 547423 . 1 960 0 -chrV 546788 548213 HC_gene_2474_tx_1 548 + 546788 548213 . 1 1426 0 -chrV 547137 548213 HC_gene_2474_tx_2 45 + 547137 548213 . 1 1077 0 -chrV 547403 548213 HC_gene_2474_tx_3 61 + 547403 548213 . 1 811 0 -chrV 547460 548213 HC_gene_2474_tx_4 57 + 547460 548213 . 1 754 0 -chrV 547564 548213 HC_gene_2474_tx_5 22 + 547564 548213 . 1 650 0 -chrV 547748 548213 HC_gene_2474_tx_6 244 + 547748 548213 . 1 466 0 -chrV 548400 549673 MC_gene_2475_tx_1 1 + 548400 549673 . 2 153,1029 0,245 -chrV 548428 549194 HC_gene_2699_tx_1 6 - 548428 549194 . 1 767 0 -chrV 548783 549735 MC_gene_2476_tx_1 1 + 548783 549735 . 1 953 0 -chrV 549659 551171 HC_gene_2700_tx_1 19 - 549659 551171 . 1 1513 0 -chrV 551448 552358 MC_gene_2701_tx_1 1 - 551448 552358 . 1 911 0 -chrV 552489 553362 HC_gene_2477_tx_1 34 + 552489 553362 . 1 874 0 -chrV 552652 553362 HC_gene_2477_tx_2 20 + 552652 553362 . 1 711 0 -chrV 552874 553362 HC_gene_2477_tx_3 4 + 552874 553362 . 1 489 0 -chrV 552929 553362 HC_gene_2477_tx_4 4 + 552929 553362 . 1 434 0 -chrV 553241 553604 HC_gene_2702_tx_1 21 - 553241 553604 . 1 364 0 -chrV 553241 553753 HC_gene_2702_tx_2 17 - 553241 553753 . 1 513 0 -chrV 553241 553836 HC_gene_2702_tx_3 7 - 553241 553836 . 1 596 0 -chrV 553241 553971 HC_gene_2702_tx_4 104 - 553241 553971 . 1 731 0 -chrV 554137 555049 HC_gene_2478_tx_1 3 + 554137 555049 . 1 913 0 -chrV 554137 556057 HC_gene_2478_tx_2 1 + 554137 556057 . 1 1921 0 -chrV 554827 555738 MC_gene_2703_tx_1 1 - 554827 555738 . 1 912 0 -chrV 555304 556799 MC_gene_2704_tx_1 1 - 555304 556799 . 1 1496 0 -chrV 555363 556264 MC_gene_2704_tx_2 1 - 555363 556264 . 1 902 0 -chrV 556221 557254 MC_gene_2479_tx_1 1 + 556221 557254 . 1 1034 0 -chrV 556686 557436 MC_gene_2480_tx_1 1 + 556686 557436 . 1 751 0 -chrV 557160 558971 HC_gene_2705_tx_1 1 - 557160 558971 . 1 1812 0 -chrV 559385 560421 HC_gene_2481_tx_1 5 + 559385 560421 . 1 1037 0 -chrV 560710 561649 LC_gene_2482_tx_1 1 + 560710 561649 . 1 940 0 -chrV 561325 562819 HC_gene_2706_tx_1 1 - 561325 562819 . 1 1495 0 -chrV 561491 562706 HC_gene_2706_tx_2 7 - 561491 562706 . 1 1216 0 -chrV 561491 562782 HC_gene_2706_tx_3 1 - 561491 562782 . 2 1139,89 0,1203 -chrV 561491 562819 HC_gene_2706_tx_4 39 - 561491 562819 . 1 1329 0 -chrV 561491 562819 HC_gene_2706_tx_5 1 - 561491 562819 . 2 373,900 0,429 -chrV 561491 562819 HC_gene_2706_tx_6 1 - 561491 562819 . 2 214,1058 0,271 -chrV 561646 562706 HC_gene_2706_tx_7 2 - 561646 562706 . 1 1061 0 -chrV 561646 562819 HC_gene_2706_tx_8 6 - 561646 562819 . 1 1174 0 -chrV 562956 563302 MC_gene_2483_tx_1 1 + 562956 563302 . 1 347 0 -chrV 563358 563962 LC_gene_2484_tx_1 1 + 563358 563962 . 1 605 0 -chrV 564633 565350 HC_gene_2707_tx_1 1 - 564633 565350 . 1 718 0 -chrV 564699 565350 HC_gene_2707_tx_2 3 - 564699 565350 . 1 652 0 -chrV 565491 566406 HC_gene_2708_tx_1 1 - 565491 566406 . 1 916 0 -chrV 565553 566920 MC_gene_2485_tx_1 1 + 565553 566920 . 1 1368 0 -chrV 566692 567114 MC_gene_2709_tx_1 1 - 566692 567114 . 1 423 0 -chrV 567192 567593 HC_gene_2710_tx_1 1 - 567192 567593 . 1 402 0 -chrV 567275 567593 HC_gene_2710_tx_2 4 - 567275 567593 . 1 319 0 -chrV 567895 568982 HC_gene_2486_tx_1 2 + 567895 568982 . 1 1088 0 -chrV 568032 568982 HC_gene_2486_tx_2 4 + 568032 568982 . 1 951 0 -chrV 569999 570634 LC_gene_2487_tx_1 1 + 569999 570634 . 1 636 0 -chrV 570103 572022 LC_gene_2711_tx_1 1 - 570103 572022 . 1 1920 0 -chrV 571242 576470 LC_gene_2488_tx_1 1 + 571242 576470 . 1 5229 0 -chrVI 5954 6125 MC_gene_2819_tx_1 1 - 5954 6125 . 1 172 0 -chrVI 8457 11062 HC_gene_2820_tx_1 2 - 8457 11062 . 1 2606 0 -chrVI 11602 12413 MC_gene_2712_tx_1 1 + 11602 12413 . 1 812 0 -chrVI 12157 12474 MC_gene_2821_tx_1 1 - 12157 12474 . 1 318 0 -chrVI 13220 14065 LC_gene_2713_tx_1 1 + 13220 14065 . 1 846 0 -chrVI 14191 16493 HC_gene_2822_tx_1 6 - 14191 16493 . 1 2303 0 -chrVI 14191 16493 HC_gene_2822_tx_2 1 - 14191 16493 . 2 1849,318 0,1985 -chrVI 15362 16493 HC_gene_2822_tx_3 3 - 15362 16493 . 1 1132 0 -chrVI 16045 16493 HC_gene_2822_tx_4 1 - 16045 16493 . 1 449 0 -chrVI 16681 17796 MC_gene_2714_tx_1 1 + 16681 17796 . 1 1116 0 -chrVI 20777 22863 HC_gene_2823_tx_1 1 - 20777 22863 . 2 458,1412 0,675 -chrVI 20777 22863 HC_gene_2823_tx_2 2 - 20777 22863 . 1 2087 0 -chrVI 20777 22863 HC_gene_2823_tx_3 1 - 20777 22863 . 2 976,1034 0,1053 -chrVI 23595 25367 LC_gene_2715_tx_1 1 + 23595 25367 . 1 1773 0 -chrVI 25294 26437 MC_gene_2824_tx_1 1 - 25294 26437 . 1 1144 0 -chrVI 25384 27891 MC_gene_2825_tx_1 1 - 25384 27891 . 2 991,1386 0,1122 -chrVI 28206 32680 HC_gene_2716_tx_1 1 + 28206 32680 . 1 4475 0 -chrVI 28206 32868 HC_gene_2716_tx_2 1 + 28206 32868 . 1 4663 0 -chrVI 30442 31084 MC_gene_2826_tx_1 1 - 30442 31084 . 1 643 0 -chrVI 31540 32002 LC_gene_2827_tx_1 1 - 31540 32002 . 1 463 0 -chrVI 32997 36580 HC_gene_2828_tx_1 1 - 32997 36580 . 1 3584 0 -chrVI 36798 38822 HC_gene_2717_tx_1 9 + 36798 38822 . 1 2025 0 -chrVI 37405 38822 HC_gene_2717_tx_2 3 + 37405 38822 . 1 1418 0 -chrVI 38731 39243 HC_gene_2829_tx_1 10 - 38731 39243 . 1 513 0 -chrVI 38731 39418 HC_gene_2829_tx_2 4 - 38731 39418 . 1 688 0 -chrVI 38731 39509 HC_gene_2829_tx_3 6 - 38731 39509 . 1 779 0 -chrVI 38731 40203 HC_gene_2829_tx_4 49 - 38731 40203 . 1 1473 0 -chrVI 40412 42630 HC_gene_2718_tx_1 20 + 40412 42630 . 1 2219 0 -chrVI 40412 42630 HC_gene_2718_tx_2 1 + 40412 42630 . 2 1216,942 0,1277 -chrVI 40637 42630 HC_gene_2718_tx_3 2 + 40637 42630 . 1 1994 0 -chrVI 42796 43588 HC_gene_2719_tx_1 89 + 42796 43588 . 1 793 0 -chrVI 42796 43588 HC_gene_2719_tx_2 2 + 42796 43588 . 2 181,561 0,232 -chrVI 43009 43588 HC_gene_2719_tx_3 19 + 43009 43588 . 1 580 0 -chrVI 43468 44329 HC_gene_2830_tx_1 33 - 43468 44329 . 1 862 0 -chrVI 43468 44468 HC_gene_2830_tx_2 765 - 43468 44468 . 1 1001 0 -chrVI 43468 44468 HC_gene_2830_tx_3 1 - 43468 44468 . 2 401,230 0,771 -chrVI 43468 44468 HC_gene_2830_tx_4 1 - 43468 44468 . 3 375,124,236 0,492,765 -chrVI 43468 44468 HC_gene_2830_tx_5 1 - 43468 44468 . 2 400,538 0,463 -chrVI 43468 44468 HC_gene_2830_tx_6 1 - 43468 44468 . 2 349,213 0,788 -chrVI 43468 44468 HC_gene_2830_tx_7 1 - 43468 44468 . 2 321,254 0,747 -chrVI 43468 44468 HC_gene_2830_tx_8 1 - 43468 44468 . 2 536,397 0,604 -chrVI 43468 44468 HC_gene_2830_tx_9 1 - 43468 44468 . 2 341,575 0,426 -chrVI 43468 45143 HC_gene_2830_tx_10 2 - 43468 45143 . 1 1676 0 -chrVI 43468 45415 HC_gene_2830_tx_11 2 - 43468 45415 . 1 1948 0 -chrVI 43468 45580 HC_gene_2830_tx_12 12 - 43468 45580 . 1 2113 0 -chrVI 44036 45585 LC_gene_2720_tx_1 1 + 44036 45585 . 1 1550 0 -chrVI 44437 45553 HC_gene_2830_tx_13 1 - 44437 45553 . 1 1117 0 -chrVI 44437 45563 HC_gene_2830_tx_14 1 - 44437 45563 . 1 1127 0 -chrVI 44437 45567 HC_gene_2830_tx_15 1 - 44437 45567 . 1 1131 0 -chrVI 44437 45580 HC_gene_2830_tx_16 3 - 44437 45580 . 1 1144 0 -chrVI 44437 45592 HC_gene_2830_tx_17 1 - 44437 45592 . 1 1156 0 -chrVI 44533 45143 HC_gene_2830_tx_20 2 - 44533 45143 . 1 611 0 -chrVI 44533 45415 HC_gene_2830_tx_18 2 - 44533 45415 . 1 883 0 -chrVI 44533 45580 HC_gene_2830_tx_19 6 - 44533 45580 . 1 1048 0 -chrVI 45627 47778 HC_gene_2831_tx_1 6 - 45627 47778 . 1 2152 0 -chrVI 45627 47778 HC_gene_2831_tx_2 1 - 45627 47778 . 2 936,1067 0,1085 -chrVI 47879 48987 HC_gene_2721_tx_1 1 + 47879 48987 . 2 537,511 0,598 -chrVI 47879 48987 HC_gene_2721_tx_2 17 + 47879 48987 . 1 1109 0 -chrVI 48568 48964 LC_gene_2832_tx_1 1 - 48568 48964 . 1 397 0 -chrVI 49116 51183 HC_gene_2722_tx_1 18 + 49116 51183 . 1 2068 0 -chrVI 49116 51183 HC_gene_2722_tx_2 1 + 49116 51183 . 2 318,1695 0,373 -chrVI 49116 51183 HC_gene_2722_tx_3 1 + 49116 51183 . 2 243,1785 0,283 -chrVI 49116 51183 HC_gene_2722_tx_4 1 + 49116 51183 . 2 1528,355 0,1713 -chrVI 49116 51281 HC_gene_2722_tx_5 1 + 49116 51281 . 1 2166 0 -chrVI 49116 51281 HC_gene_2722_tx_6 1 + 49116 51281 . 2 1177,924 0,1242 -chrVI 49116 51281 HC_gene_2722_tx_7 1 + 49116 51281 . 2 1626,474 0,1692 -chrVI 49559 51183 HC_gene_2722_tx_8 3 + 49559 51183 . 1 1625 0 -chrVI 49798 51183 HC_gene_2722_tx_9 4 + 49798 51183 . 1 1386 0 -chrVI 49906 51183 HC_gene_2722_tx_10 4 + 49906 51183 . 1 1278 0 -chrVI 51303 52998 LC_gene_2833_tx_1 1 - 51303 52998 . 1 1696 0 -chrVI 52582 53104 LC_gene_2723_tx_1 1 + 52582 53104 . 1 523 0 -chrVI 52970 53654 HC_gene_2834_tx_1 74 - 52970 53654 . 1 685 0 -chrVI 52970 53799 HC_gene_2834_tx_2 28 - 52970 53799 . 1 830 0 -chrVI 52970 53885 HC_gene_2834_tx_3 17 - 52970 53885 . 1 916 0 -chrVI 52970 54288 HC_gene_2834_tx_6 54 - 52970 54288 . 1 1319 0 -chrVI 52970 54817 HC_gene_2834_tx_8 168 - 52970 54817 . 2 1408,131 0,1717 -chrVI 53140 53654 HC_gene_2834_tx_13 641 - 53140 53654 . 1 515 0 -chrVI 53140 53799 HC_gene_2834_tx_4 248 - 53140 53799 . 1 660 0 -chrVI 53140 53885 HC_gene_2834_tx_5 117 - 53140 53885 . 1 746 0 -chrVI 53140 54288 HC_gene_2834_tx_7 610 - 53140 54288 . 1 1149 0 -chrVI 53140 54817 HC_gene_2834_tx_9 1585 - 53140 54817 . 2 1238,131 0,1547 -chrVI 53140 54817 HC_gene_2834_tx_10 31 - 53140 54817 . 1 1678 0 -chrVI 53140 54817 HC_gene_2834_tx_11 3 - 53140 54817 . 2 1236,128 0,1550 -chrVI 53140 54817 HC_gene_2834_tx_12 3 - 53140 54817 . 2 1238,135 0,1543 -chrVI 54973 55348 HC_gene_2724_tx_1 25 + 54973 55348 . 1 376 0 -chrVI 54981 55348 HC_gene_2724_tx_2 1 + 54981 55348 . 1 368 0 -chrVI 54996 55348 HC_gene_2724_tx_3 1 + 54996 55348 . 1 353 0 -chrVI 55244 55692 HC_gene_2835_tx_1 175 - 55244 55692 . 1 449 0 -chrVI 55244 55827 HC_gene_2835_tx_2 59 - 55244 55827 . 1 584 0 -chrVI 55244 55929 HC_gene_2835_tx_3 43 - 55244 55929 . 1 686 0 -chrVI 55244 56020 HC_gene_2835_tx_4 622 - 55244 56020 . 1 777 0 -chrVI 55357 55569 MC_gene_2725_tx_1 1 + 55357 55569 . 1 213 0 -chrVI 56270 57844 HC_gene_2726_tx_1 1 + 56270 57844 . 1 1575 0 -chrVI 56270 57846 HC_gene_2726_tx_2 3 + 56270 57846 . 1 1577 0 -chrVI 56270 57847 HC_gene_2726_tx_3 2 + 56270 57847 . 1 1578 0 -chrVI 56270 57848 HC_gene_2726_tx_4 1 + 56270 57848 . 1 1579 0 -chrVI 56270 57850 HC_gene_2726_tx_5 1 + 56270 57850 . 1 1581 0 -chrVI 56270 57935 HC_gene_2726_tx_6 212 + 56270 57935 . 1 1666 0 -chrVI 56270 57935 HC_gene_2726_tx_7 1 + 56270 57935 . 2 239,848 0,818 -chrVI 56270 57935 HC_gene_2726_tx_8 1 + 56270 57935 . 2 1333,264 0,1402 -chrVI 56270 57935 HC_gene_2726_tx_9 1 + 56270 57935 . 2 491,887 0,779 -chrVI 56270 57935 HC_gene_2726_tx_10 1 + 56270 57935 . 2 94,1030 0,636 -chrVI 56270 58064 HC_gene_2726_tx_11 1 + 56270 58064 . 1 1795 0 -chrVI 56420 57846 HC_gene_2726_tx_12 1 + 56420 57846 . 1 1427 0 -chrVI 56420 57848 HC_gene_2726_tx_13 1 + 56420 57848 . 1 1429 0 -chrVI 56420 57935 HC_gene_2726_tx_14 25 + 56420 57935 . 1 1516 0 -chrVI 56420 57935 HC_gene_2726_tx_15 1 + 56420 57935 . 2 1366,86 0,1430 -chrVI 57140 57847 HC_gene_2726_tx_16 1 + 57140 57847 . 1 708 0 -chrVI 57140 57848 HC_gene_2726_tx_17 1 + 57140 57848 . 1 709 0 -chrVI 57140 57853 HC_gene_2726_tx_18 1 + 57140 57853 . 1 714 0 -chrVI 57140 57935 HC_gene_2726_tx_19 57 + 57140 57935 . 1 796 0 -chrVI 57140 57935 HC_gene_2726_tx_20 1 + 57140 57935 . 2 583,171 0,625 -chrVI 57291 57845 HC_gene_2726_tx_21 1 + 57291 57845 . 1 555 0 -chrVI 57291 57935 HC_gene_2726_tx_22 35 + 57291 57935 . 1 645 0 -chrVI 57474 57847 HC_gene_2726_tx_23 1 + 57474 57847 . 1 374 0 -chrVI 57474 57935 HC_gene_2726_tx_24 44 + 57474 57935 . 1 462 0 -chrVI 57569 57935 HC_gene_2726_tx_25 68 + 57569 57935 . 1 367 0 -chrVI 58580 62938 HC_gene_2727_tx_1 2 + 58580 62938 . 1 4359 0 -chrVI 58834 62938 HC_gene_2727_tx_2 1 + 58834 62938 . 1 4105 0 -chrVI 62399 62938 HC_gene_2727_tx_3 15 + 62399 62938 . 1 540 0 -chrVI 62842 64035 HC_gene_2836_tx_1 26 - 62842 64035 . 2 1018,62 0,1132 -chrVI 62842 64035 HC_gene_2836_tx_2 1 - 62842 64035 . 2 1006,62 0,1132 -chrVI 62923 64218 LC_gene_2728_tx_1 1 + 62923 64218 . 1 1296 0 -chrVI 64156 64610 HC_gene_2837_tx_1 405 - 64156 64610 . 1 455 0 -chrVI 64156 64975 HC_gene_2837_tx_2 158 - 64156 64975 . 1 820 0 -chrVI 64156 64975 HC_gene_2837_tx_3 206 - 64156 64975 . 2 444,55 0,765 -chrVI 64156 64975 HC_gene_2837_tx_4 5 - 64156 64975 . 2 436,55 0,765 -chrVI 65287 67945 HC_gene_2729_tx_1 1 + 65287 67945 . 1 2659 0 -chrVI 67965 68817 HC_gene_2730_tx_1 14 + 67965 68817 . 1 853 0 -chrVI 68114 68817 HC_gene_2730_tx_2 4 + 68114 68817 . 1 704 0 -chrVI 68891 69551 HC_gene_2838_tx_1 8 - 68891 69551 . 1 661 0 -chrVI 68891 72547 HC_gene_2838_tx_2 1 - 68891 72547 . 1 3657 0 -chrVI 73834 74689 LC_gene_2731_tx_1 1 + 73834 74689 . 1 856 0 -chrVI 74489 74596 HC_gene_2839_tx_1 1 - 74489 74596 . 1 108 0 -chrVI 75112 76563 HC_gene_2732_tx_1 45 + 75112 76563 . 1 1452 0 -chrVI 75112 76563 HC_gene_2732_tx_2 1 + 75112 76563 . 2 265,612 0,840 -chrVI 75112 76563 HC_gene_2732_tx_3 1 + 75112 76563 . 2 234,199 0,1253 -chrVI 75112 76563 HC_gene_2732_tx_4 2 + 75112 76563 . 2 730,469 0,983 -chrVI 75112 76563 HC_gene_2732_tx_5 3 + 75112 76563 . 2 730,472 0,980 -chrVI 75112 76563 HC_gene_2732_tx_6 1 + 75112 76563 . 2 730,387 0,1065 -chrVI 75112 76563 HC_gene_2732_tx_7 1 + 75112 76563 . 2 706,478 0,974 -chrVI 75112 76563 HC_gene_2732_tx_8 2 + 75112 76563 . 2 730,464 0,988 -chrVI 75128 76563 HC_gene_2732_tx_9 1 + 75128 76563 . 2 773,513 0,923 -chrVI 75669 76563 HC_gene_2732_tx_10 1 + 75669 76563 . 2 232,596 0,299 -chrVI 75682 76563 HC_gene_2732_tx_11 201 + 75682 76563 . 1 882 0 -chrVI 75682 76563 HC_gene_2732_tx_12 1 + 75682 76563 . 2 160,472 0,410 -chrVI 75891 76563 HC_gene_2732_tx_13 179 + 75891 76563 . 1 673 0 -chrVI 75891 76563 HC_gene_2732_tx_14 1 + 75891 76563 . 2 302,228 0,445 -chrVI 75891 76563 HC_gene_2732_tx_15 1 + 75891 76563 . 2 308,299 0,374 -chrVI 75987 76563 HC_gene_2732_tx_16 234 + 75987 76563 . 1 577 0 -chrVI 76423 77749 HC_gene_2840_tx_1 1 - 76423 77749 . 1 1327 0 -chrVI 76715 78069 HC_gene_2733_tx_1 6 + 76715 78069 . 1 1355 0 -chrVI 76826 78069 HC_gene_2733_tx_2 4 + 76826 78069 . 1 1244 0 -chrVI 77574 78069 HC_gene_2733_tx_3 3 + 77574 78069 . 1 496 0 -chrVI 77986 78301 HC_gene_2841_tx_1 8 - 77986 78301 . 1 316 0 -chrVI 77986 78397 HC_gene_2841_tx_2 4 - 77986 78397 . 1 412 0 -chrVI 77986 78583 HC_gene_2841_tx_3 11 - 77986 78583 . 1 598 0 -chrVI 77986 79201 HC_gene_2841_tx_4 17 - 77986 79201 . 1 1216 0 -chrVI 78770 79369 HC_gene_2734_tx_1 3 + 78770 79369 . 1 600 0 -chrVI 79268 80236 HC_gene_2842_tx_1 106 - 79268 80236 . 1 969 0 -chrVI 80341 81911 HC_gene_2843_tx_1 21 - 80341 81911 . 1 1571 0 -chrVI 80424 80990 LC_gene_2735_tx_1 1 + 80424 80990 . 1 567 0 -chrVI 82549 82911 HC_gene_2736_tx_1 2 + 82549 82911 . 1 363 0 -chrVI 82549 83351 HC_gene_2736_tx_2 1 + 82549 83351 . 1 803 0 -chrVI 82549 84141 HC_gene_2736_tx_4 4 + 82549 84141 . 1 1593 0 -chrVI 82707 83351 HC_gene_2736_tx_3 1 + 82707 83351 . 1 645 0 -chrVI 82947 84141 HC_gene_2736_tx_5 2 + 82947 84141 . 1 1195 0 -chrVI 83100 84141 HC_gene_2736_tx_6 1 + 83100 84141 . 1 1042 0 -chrVI 83465 84141 HC_gene_2736_tx_7 1 + 83465 84141 . 1 677 0 -chrVI 83969 86730 HC_gene_2844_tx_1 2 - 83969 86730 . 1 2762 0 -chrVI 83969 87312 HC_gene_2844_tx_2 1 - 83969 87312 . 1 3344 0 -chrVI 85203 87312 HC_gene_2844_tx_3 3 - 85203 87312 . 1 2110 0 -chrVI 86800 87545 MC_gene_2737_tx_1 1 + 86800 87545 . 1 746 0 -chrVI 87439 88059 HC_gene_2845_tx_1 10 - 87439 88059 . 1 621 0 -chrVI 87439 88586 HC_gene_2845_tx_3 6 - 87439 88586 . 1 1148 0 -chrVI 87439 89064 HC_gene_2845_tx_4 1 - 87439 89064 . 1 1626 0 -chrVI 87439 89315 HC_gene_2845_tx_5 11 - 87439 89315 . 1 1877 0 -chrVI 87439 89315 HC_gene_2845_tx_6 1 - 87439 89315 . 2 555,1246 0,631 -chrVI 87439 89315 HC_gene_2845_tx_7 1 - 87439 89315 . 2 850,913 0,964 -chrVI 87439 90260 HC_gene_2845_tx_9 3 - 87439 90260 . 1 2822 0 -chrVI 87439 90660 HC_gene_2845_tx_10 3 - 87439 90660 . 1 3222 0 -chrVI 87439 90660 HC_gene_2845_tx_11 1 - 87439 90660 . 2 573,2591 0,631 -chrVI 87439 90660 HC_gene_2845_tx_12 1 - 87439 90660 . 2 1453,1639 0,1583 -chrVI 87554 88059 HC_gene_2845_tx_2 2 - 87554 88059 . 1 506 0 -chrVI 87554 89315 HC_gene_2845_tx_8 2 - 87554 89315 . 1 1762 0 -chrVI 87554 90660 HC_gene_2845_tx_13 2 - 87554 90660 . 1 3107 0 -chrVI 89655 90423 HC_gene_2738_tx_1 1 + 89655 90423 . 1 769 0 -chrVI 89655 90765 HC_gene_2738_tx_2 17 + 89655 90765 . 1 1111 0 -chrVI 89655 90765 HC_gene_2738_tx_3 1 + 89655 90765 . 2 233,562 0,549 -chrVI 90555 90765 HC_gene_2738_tx_4 1 + 90555 90765 . 1 211 0 -chrVI 90971 93480 HC_gene_2739_tx_1 11 + 90971 93480 . 1 2510 0 -chrVI 90971 93480 HC_gene_2739_tx_2 1 + 90971 93480 . 2 180,2180 0,330 -chrVI 91433 93480 HC_gene_2739_tx_3 1 + 91433 93480 . 1 2048 0 -chrVI 93311 94090 HC_gene_2846_tx_1 1 - 93311 94090 . 1 780 0 -chrVI 93311 94683 HC_gene_2846_tx_5 1 - 93311 94683 . 1 1373 0 -chrVI 93311 95020 HC_gene_2846_tx_6 1 - 93311 95020 . 1 1710 0 -chrVI 93396 94090 HC_gene_2846_tx_2 39 - 93396 94090 . 1 695 0 -chrVI 93396 94090 HC_gene_2846_tx_3 1 - 93396 94090 . 2 215,427 0,268 -chrVI 93396 94240 HC_gene_2846_tx_4 31 - 93396 94240 . 1 845 0 -chrVI 93396 94468 HC_gene_2846_tx_7 24 - 93396 94468 . 1 1073 0 -chrVI 93396 94683 HC_gene_2846_tx_8 29 - 93396 94683 . 1 1288 0 -chrVI 93396 95020 HC_gene_2846_tx_9 89 - 93396 95020 . 1 1625 0 -chrVI 93396 95020 HC_gene_2846_tx_10 1 - 93396 95020 . 2 592,833 0,792 -chrVI 93396 95104 HC_gene_2846_tx_11 30 - 93396 95104 . 1 1709 0 -chrVI 93396 95182 HC_gene_2846_tx_12 11 - 93396 95182 . 1 1787 0 -chrVI 95296 96183 HC_gene_2740_tx_1 2 + 95296 96183 . 1 888 0 -chrVI 95495 96183 HC_gene_2740_tx_2 1 + 95495 96183 . 1 689 0 -chrVI 95749 97479 MC_gene_2847_tx_1 1 - 95749 97479 . 1 1731 0 -chrVI 95797 96183 HC_gene_2740_tx_3 4 + 95797 96183 . 1 387 0 -chrVI 95797 96641 HC_gene_2740_tx_4 1 + 95797 96641 . 1 845 0 -chrVI 95797 96648 HC_gene_2740_tx_5 1 + 95797 96648 . 1 852 0 -chrVI 95939 96183 HC_gene_2740_tx_8 1 + 95939 96183 . 1 245 0 -chrVI 95939 96648 HC_gene_2740_tx_6 1 + 95939 96648 . 1 710 0 -chrVI 95939 96653 HC_gene_2740_tx_7 1 + 95939 96653 . 1 715 0 -chrVI 96084 96648 HC_gene_2741_tx_1 1 + 96084 96648 . 1 565 0 -chrVI 96084 96651 HC_gene_2741_tx_2 1 + 96084 96651 . 1 568 0 -chrVI 96084 96666 HC_gene_2741_tx_3 1 + 96084 96666 . 1 583 0 -chrVI 96084 97662 HC_gene_2741_tx_4 3 + 96084 97662 . 1 1579 0 -chrVI 96415 97662 HC_gene_2741_tx_5 3 + 96415 97662 . 1 1248 0 -chrVI 97288 97662 HC_gene_2741_tx_6 3 + 97288 97662 . 1 375 0 -chrVI 97526 97795 HC_gene_2848_tx_1 2 - 97526 97795 . 1 270 0 -chrVI 97526 98017 HC_gene_2848_tx_2 12 - 97526 98017 . 1 492 0 -chrVI 97526 98765 HC_gene_2848_tx_4 1 - 97526 98765 . 1 1240 0 -chrVI 97589 98017 HC_gene_2848_tx_3 2 - 97589 98017 . 1 429 0 -chrVI 99079 99632 MC_gene_2849_tx_1 1 - 99079 99632 . 1 554 0 -chrVI 100449 100903 MC_gene_2742_tx_1 1 + 100449 100903 . 1 455 0 -chrVI 101518 101799 HC_gene_2850_tx_1 50 - 101518 101799 . 1 282 0 -chrVI 101518 102185 HC_gene_2850_tx_2 21 - 101518 102185 . 1 668 0 -chrVI 101518 102236 HC_gene_2850_tx_3 41 - 101518 102236 . 1 719 0 -chrVI 101518 102395 HC_gene_2850_tx_4 30 - 101518 102395 . 1 878 0 -chrVI 101518 102738 HC_gene_2850_tx_5 26 - 101518 102738 . 1 1221 0 -chrVI 101518 102941 HC_gene_2850_tx_6 12 - 101518 102941 . 1 1424 0 -chrVI 101518 103213 HC_gene_2850_tx_7 181 - 101518 103213 . 1 1696 0 -chrVI 101518 103213 HC_gene_2850_tx_8 1 - 101518 103213 . 2 1209,398 0,1298 -chrVI 101518 103213 HC_gene_2850_tx_9 1 - 101518 103213 . 2 92,1557 0,139 -chrVI 101518 103213 HC_gene_2850_tx_10 1 - 101518 103213 . 2 99,1468 0,228 -chrVI 101518 103213 HC_gene_2850_tx_11 1 - 101518 103213 . 2 625,999 0,697 -chrVI 102938 103263 HC_gene_2743_tx_1 4 + 102938 103263 . 1 326 0 -chrVI 103170 103557 HC_gene_2851_tx_1 1 - 103170 103557 . 1 388 0 -chrVI 103653 103999 HC_gene_2744_tx_1 2 + 103653 103999 . 1 347 0 -chrVI 103655 103999 HC_gene_2744_tx_2 108 + 103655 103999 . 1 345 0 -chrVI 103656 103999 HC_gene_2744_tx_3 1 + 103656 103999 . 1 344 0 -chrVI 103660 103999 HC_gene_2744_tx_4 1 + 103660 103999 . 1 340 0 -chrVI 103662 103999 HC_gene_2744_tx_5 1 + 103662 103999 . 1 338 0 -chrVI 103664 103999 HC_gene_2744_tx_6 1 + 103664 103999 . 1 336 0 -chrVI 103665 103999 HC_gene_2744_tx_7 2 + 103665 103999 . 1 335 0 -chrVI 103667 103999 HC_gene_2744_tx_8 2 + 103667 103999 . 1 333 0 -chrVI 103669 103999 HC_gene_2744_tx_9 2 + 103669 103999 . 1 331 0 -chrVI 103671 103999 HC_gene_2744_tx_10 1 + 103671 103999 . 1 329 0 -chrVI 103672 103999 HC_gene_2744_tx_11 1 + 103672 103999 . 1 328 0 -chrVI 103675 103999 HC_gene_2744_tx_12 1 + 103675 103999 . 1 325 0 -chrVI 103676 103999 HC_gene_2744_tx_13 2 + 103676 103999 . 1 324 0 -chrVI 103677 103999 HC_gene_2744_tx_14 1 + 103677 103999 . 1 323 0 -chrVI 103686 103999 HC_gene_2744_tx_15 1 + 103686 103999 . 1 314 0 -chrVI 103687 103999 HC_gene_2744_tx_16 1 + 103687 103999 . 1 313 0 -chrVI 103688 103999 HC_gene_2744_tx_17 1 + 103688 103999 . 1 312 0 -chrVI 103691 103999 HC_gene_2744_tx_18 1 + 103691 103999 . 1 309 0 -chrVI 103692 103999 HC_gene_2744_tx_19 2 + 103692 103999 . 1 308 0 -chrVI 103695 103999 HC_gene_2744_tx_20 3 + 103695 103999 . 1 305 0 -chrVI 103799 104246 HC_gene_2852_tx_1 10 - 103799 104246 . 1 448 0 -chrVI 103799 104495 HC_gene_2852_tx_2 59 - 103799 104495 . 1 697 0 -chrVI 103906 104188 HC_gene_2852_tx_4 3 - 103906 104188 . 1 283 0 -chrVI 103906 104246 HC_gene_2852_tx_5 8 - 103906 104246 . 1 341 0 -chrVI 103906 104495 HC_gene_2852_tx_3 114 - 103906 104495 . 1 590 0 -chrVI 104007 104704 HC_gene_2745_tx_1 1 + 104007 104704 . 1 698 0 -chrVI 104084 104704 HC_gene_2745_tx_2 4 + 104084 104704 . 1 621 0 -chrVI 104597 104913 HC_gene_2853_tx_1 18 - 104597 104913 . 1 317 0 -chrVI 104597 105046 HC_gene_2853_tx_2 44 - 104597 105046 . 1 450 0 -chrVI 104597 105170 HC_gene_2853_tx_3 6 - 104597 105170 . 1 574 0 -chrVI 104597 105641 HC_gene_2853_tx_4 18 - 104597 105641 . 1 1045 0 -chrVI 104597 105641 HC_gene_2853_tx_5 1 - 104597 105641 . 2 861,144 0,901 -chrVI 104597 105641 HC_gene_2853_tx_6 1 - 104597 105641 . 2 640,144 0,901 -chrVI 104597 106238 HC_gene_2853_tx_8 53 - 104597 106238 . 1 1642 0 -chrVI 104597 106238 HC_gene_2853_tx_9 1 - 104597 106238 . 2 655,941 0,701 -chrVI 104597 106238 HC_gene_2853_tx_10 1 - 104597 106238 . 2 634,855 0,787 -chrVI 104597 106238 HC_gene_2853_tx_11 1 - 104597 106238 . 2 297,1185 0,457 -chrVI 104597 106238 HC_gene_2853_tx_12 1 - 104597 106238 . 2 710,876 0,766 -chrVI 104597 106298 HC_gene_2853_tx_13 1 - 104597 106298 . 2 1550,33 0,1669 -chrVI 104750 105170 HC_gene_2853_tx_15 2 - 104750 105170 . 1 421 0 -chrVI 104750 105641 HC_gene_2853_tx_7 1 - 104750 105641 . 1 892 0 -chrVI 104750 106238 HC_gene_2853_tx_14 12 - 104750 106238 . 1 1489 0 -chrVI 106848 107213 HC_gene_2746_tx_1 2 + 106848 107213 . 1 366 0 -chrVI 106853 107213 HC_gene_2746_tx_2 1 + 106853 107213 . 1 361 0 -chrVI 107378 107789 LC_gene_2747_tx_1 1 + 107378 107789 . 1 412 0 -chrVI 107681 108075 HC_gene_2854_tx_1 1 - 107681 108075 . 1 395 0 -chrVI 107681 108435 HC_gene_2854_tx_3 1 - 107681 108435 . 1 755 0 -chrVI 107681 108879 HC_gene_2854_tx_5 3 - 107681 108879 . 1 1199 0 -chrVI 107681 108936 HC_gene_2854_tx_6 1 - 107681 108936 . 1 1256 0 -chrVI 107681 109953 HC_gene_2854_tx_12 1 - 107681 109953 . 1 2273 0 -chrVI 107749 108075 HC_gene_2854_tx_2 4 - 107749 108075 . 1 327 0 -chrVI 107749 108435 HC_gene_2854_tx_4 4 - 107749 108435 . 1 687 0 -chrVI 107749 108707 HC_gene_2854_tx_7 4 - 107749 108707 . 1 959 0 -chrVI 107749 108879 HC_gene_2854_tx_8 1 - 107749 108879 . 2 590,264 0,867 -chrVI 107749 108879 HC_gene_2854_tx_9 1 - 107749 108879 . 1 1131 0 -chrVI 107749 108936 HC_gene_2854_tx_10 1 - 107749 108936 . 1 1188 0 -chrVI 107749 109057 HC_gene_2854_tx_11 1 - 107749 109057 . 1 1309 0 -chrVI 107749 109640 HC_gene_2854_tx_13 2 - 107749 109640 . 1 1892 0 -chrVI 107749 109953 HC_gene_2854_tx_14 5 - 107749 109953 . 1 2205 0 -chrVI 110174 110550 HC_gene_2748_tx_1 25 + 110174 110550 . 1 377 0 -chrVI 110545 111652 LC_gene_2749_tx_1 1 + 110545 111652 . 1 1108 0 -chrVI 111112 111859 HC_gene_2855_tx_1 14 - 111112 111859 . 1 748 0 -chrVI 111822 112351 HC_gene_2750_tx_1 3 + 111822 112351 . 1 530 0 -chrVI 111963 112351 HC_gene_2750_tx_2 7 + 111963 112351 . 1 389 0 -chrVI 112034 112351 HC_gene_2750_tx_3 12 + 112034 112351 . 1 318 0 -chrVI 112360 114050 LC_gene_2751_tx_1 1 + 112360 114050 . 1 1691 0 -chrVI 113945 114542 MC_gene_2856_tx_1 1 - 113945 114542 . 1 598 0 -chrVI 114983 115311 HC_gene_2857_tx_1 69 - 114983 115311 . 1 329 0 -chrVI 114983 115491 HC_gene_2857_tx_2 56 - 114983 115491 . 1 509 0 -chrVI 114983 115617 HC_gene_2857_tx_3 48 - 114983 115617 . 1 635 0 -chrVI 114983 115692 HC_gene_2857_tx_4 3 - 114983 115692 . 1 710 0 -chrVI 114983 115773 HC_gene_2857_tx_5 1 - 114983 115773 . 2 194,514 0,277 -chrVI 114983 115773 HC_gene_2857_tx_6 382 - 114983 115773 . 1 791 0 -chrVI 114983 115773 HC_gene_2857_tx_7 1 - 114983 115773 . 2 511,195 0,596 -chrVI 114983 115773 HC_gene_2857_tx_8 1 - 114983 115773 . 2 434,305 0,486 -chrVI 114983 115773 HC_gene_2857_tx_9 1 - 114983 115773 . 2 444,193 0,598 -chrVI 114983 115773 HC_gene_2857_tx_10 1 - 114983 115773 . 2 221,530 0,261 -chrVI 114983 115773 HC_gene_2857_tx_11 1 - 114983 115773 . 2 511,193 0,598 -chrVI 114983 115773 HC_gene_2857_tx_12 1 - 114983 115773 . 2 397,356 0,435 -chrVI 115953 118607 HC_gene_2752_tx_1 6 + 115953 118607 . 1 2655 0 -chrVI 118704 119127 MC_gene_2858_tx_1 1 - 118704 119127 . 1 424 0 -chrVI 119387 123219 HC_gene_2753_tx_1 6 + 119387 123219 . 1 3833 0 -chrVI 122192 123219 HC_gene_2753_tx_2 2 + 122192 123219 . 1 1028 0 -chrVI 122192 123219 HC_gene_2753_tx_3 1 + 122192 123219 . 2 145,620 0,408 -chrVI 123355 125368 HC_gene_2754_tx_1 1 + 123355 125368 . 1 2014 0 -chrVI 123355 126610 HC_gene_2754_tx_2 1 + 123355 126610 . 1 3256 0 -chrVI 127415 129617 LC_gene_2859_tx_1 1 - 127415 129617 . 1 2203 0 -chrVI 127849 129988 HC_gene_2755_tx_1 1 + 127849 129988 . 1 2140 0 -chrVI 130196 131205 HC_gene_2756_tx_1 225 + 130196 131205 . 1 1010 0 -chrVI 130258 131627 HC_gene_2860_tx_1 1 - 130258 131627 . 1 1370 0 -chrVI 130537 131205 HC_gene_2756_tx_2 35 + 130537 131205 . 1 669 0 -chrVI 130610 131205 HC_gene_2756_tx_3 25 + 130610 131205 . 1 596 0 -chrVI 130791 131205 HC_gene_2756_tx_4 29 + 130791 131205 . 1 415 0 -chrVI 130978 131384 HC_gene_2860_tx_2 3 - 130978 131384 . 1 407 0 -chrVI 130978 131627 HC_gene_2860_tx_3 13 - 130978 131627 . 1 650 0 -chrVI 132124 132364 HC_gene_2757_tx_1 1 + 132124 132364 . 1 241 0 -chrVI 132619 134372 HC_gene_2758_tx_1 4 + 132619 134372 . 1 1754 0 -chrVI 132931 134372 HC_gene_2758_tx_2 4 + 132931 134372 . 1 1442 0 -chrVI 133100 134372 HC_gene_2758_tx_3 6 + 133100 134372 . 1 1273 0 -chrVI 133202 134372 HC_gene_2758_tx_4 13 + 133202 134372 . 1 1171 0 -chrVI 133324 134372 HC_gene_2758_tx_5 6 + 133324 134372 . 1 1049 0 -chrVI 133386 134372 HC_gene_2758_tx_6 6 + 133386 134372 . 1 987 0 -chrVI 133492 134372 HC_gene_2758_tx_7 10 + 133492 134372 . 1 881 0 -chrVI 133552 134372 HC_gene_2758_tx_8 9 + 133552 134372 . 1 821 0 -chrVI 133902 134372 HC_gene_2758_tx_9 16 + 133902 134372 . 1 471 0 -chrVI 133943 135820 MC_gene_2861_tx_1 1 - 133943 135820 . 1 1878 0 -chrVI 134163 135508 MC_gene_2861_tx_2 1 - 134163 135508 . 1 1346 0 -chrVI 134395 135901 MC_gene_2862_tx_1 1 - 134395 135901 . 1 1507 0 -chrVI 134841 135424 HC_gene_2759_tx_1 1 + 134841 135424 . 1 584 0 -chrVI 137147 137897 LC_gene_2863_tx_1 1 - 137147 137897 . 1 751 0 -chrVI 138947 143927 MC_gene_2760_tx_1 1 + 138947 143927 . 1 4981 0 -chrVI 142013 144068 MC_gene_2761_tx_1 1 + 142013 144068 . 1 2056 0 -chrVI 143307 143922 LC_gene_2864_tx_1 1 - 143307 143922 . 1 616 0 -chrVI 143948 144491 MC_gene_2762_tx_1 1 + 143948 144491 . 1 544 0 -chrVI 144293 144568 MC_gene_2865_tx_1 1 - 144293 144568 . 1 276 0 -chrVI 144825 145452 LC_gene_2763_tx_1 1 + 144825 145452 . 1 628 0 -chrVI 144902 146951 HC_gene_2866_tx_1 1 - 144902 146951 . 1 2050 0 -chrVI 144968 145388 HC_gene_2866_tx_5 11 - 144968 145388 . 1 421 0 -chrVI 144968 145480 HC_gene_2866_tx_6 16 - 144968 145480 . 1 513 0 -chrVI 144968 146931 HC_gene_2866_tx_2 1 - 144968 146931 . 2 342,1548 0,416 -chrVI 144968 146951 HC_gene_2866_tx_3 41 - 144968 146951 . 1 1984 0 -chrVI 144968 146951 HC_gene_2866_tx_4 1 - 144968 146951 . 2 1299,516 0,1468 -chrVI 147133 148493 HC_gene_2764_tx_1 27 + 147133 148493 . 1 1361 0 -chrVI 147372 148493 HC_gene_2764_tx_2 4 + 147372 148493 . 1 1122 0 -chrVI 148651 149122 LC_gene_2867_tx_1 1 - 148651 149122 . 1 472 0 -chrVI 149071 149798 HC_gene_2765_tx_1 265 + 149071 149798 . 1 728 0 -chrVI 149071 149798 HC_gene_2765_tx_2 1 + 149071 149798 . 2 72,579 0,149 -chrVI 149071 149798 HC_gene_2765_tx_3 1 + 149071 149798 . 2 406,235 0,493 -chrVI 149071 149908 HC_gene_2765_tx_4 1 + 149071 149908 . 1 838 0 -chrVI 149293 149798 HC_gene_2765_tx_5 29 + 149293 149798 . 1 506 0 -chrVI 149293 149908 HC_gene_2765_tx_6 1 + 149293 149908 . 2 311,246 0,370 -chrVI 149386 149798 HC_gene_2765_tx_7 69 + 149386 149798 . 1 413 0 -chrVI 149386 149908 HC_gene_2765_tx_8 1 + 149386 149908 . 1 523 0 -chrVI 150000 152630 HC_gene_2766_tx_1 18 + 150000 152630 . 1 2631 0 -chrVI 150000 152630 HC_gene_2766_tx_2 1 + 150000 152630 . 2 1389,1177 0,1454 -chrVI 150571 152630 HC_gene_2766_tx_3 3 + 150571 152630 . 1 2060 0 -chrVI 151821 152630 HC_gene_2766_tx_4 13 + 151821 152630 . 1 810 0 -chrVI 152493 152851 HC_gene_2868_tx_1 11 - 152493 152851 . 1 359 0 -chrVI 152493 152996 HC_gene_2868_tx_2 9 - 152493 152996 . 1 504 0 -chrVI 152493 153122 HC_gene_2868_tx_3 122 - 152493 153122 . 1 630 0 -chrVI 152493 153250 HC_gene_2868_tx_4 4 - 152493 153250 . 1 758 0 -chrVI 153362 154069 HC_gene_2767_tx_1 3 + 153362 154069 . 1 708 0 -chrVI 153362 154404 HC_gene_2767_tx_4 250 + 153362 154404 . 1 1043 0 -chrVI 153362 154404 HC_gene_2767_tx_5 1 + 153362 154404 . 2 40,424 0,619 -chrVI 153362 154404 HC_gene_2767_tx_6 1 + 153362 154404 . 2 348,586 0,457 -chrVI 153362 154404 HC_gene_2767_tx_7 1 + 153362 154404 . 2 290,453 0,590 -chrVI 153362 154404 HC_gene_2767_tx_8 1 + 153362 154404 . 2 107,785 0,258 -chrVI 153362 154404 HC_gene_2767_tx_9 1 + 153362 154404 . 2 469,309 0,734 -chrVI 153362 154404 HC_gene_2767_tx_10 1 + 153362 154404 . 2 102,849 0,194 -chrVI 153362 154404 HC_gene_2767_tx_11 1 + 153362 154404 . 2 239,652 0,391 -chrVI 153373 154069 HC_gene_2767_tx_2 1 + 153373 154069 . 1 697 0 -chrVI 153374 154069 HC_gene_2767_tx_3 1 + 153374 154069 . 1 696 0 -chrVI 153545 154404 HC_gene_2767_tx_12 40 + 153545 154404 . 1 860 0 -chrVI 153545 154404 HC_gene_2767_tx_13 1 + 153545 154404 . 2 71,675 0,185 -chrVI 153731 154404 HC_gene_2767_tx_14 38 + 153731 154404 . 1 674 0 -chrVI 153731 154404 HC_gene_2767_tx_15 1 + 153731 154404 . 2 249,363 0,311 -chrVI 153731 154404 HC_gene_2767_tx_16 1 + 153731 154404 . 2 321,262 0,412 -chrVI 153838 154404 HC_gene_2767_tx_17 59 + 153838 154404 . 1 567 0 -chrVI 154011 154404 HC_gene_2767_tx_18 38 + 154011 154404 . 1 394 0 -chrVI 154319 155881 HC_gene_2869_tx_1 42 - 154319 155881 . 1 1563 0 -chrVI 154319 155881 HC_gene_2869_tx_2 1 - 154319 155881 . 2 500,909 0,654 -chrVI 156274 157842 HC_gene_2768_tx_1 97 + 156274 157842 . 1 1569 0 -chrVI 156274 157842 HC_gene_2768_tx_2 1 + 156274 157842 . 2 1045,420 0,1149 -chrVI 156274 157842 HC_gene_2768_tx_3 1 + 156274 157842 . 2 918,584 0,985 -chrVI 156274 157842 HC_gene_2768_tx_4 1 + 156274 157842 . 2 903,573 0,996 -chrVI 156274 157842 HC_gene_2768_tx_5 1 + 156274 157842 . 2 886,617 0,952 -chrVI 156274 157842 HC_gene_2768_tx_6 1 + 156274 157842 . 2 873,622 0,947 -chrVI 156274 157842 HC_gene_2768_tx_7 1 + 156274 157842 . 2 1169,338 0,1231 -chrVI 156274 157842 HC_gene_2768_tx_8 1 + 156274 157842 . 2 958,550 0,1019 -chrVI 156274 157842 HC_gene_2768_tx_9 1 + 156274 157842 . 2 955,560 0,1009 -chrVI 156274 157842 HC_gene_2768_tx_10 1 + 156274 157842 . 2 146,1313 0,256 -chrVI 156274 157842 HC_gene_2768_tx_11 1 + 156274 157842 . 2 886,584 0,985 -chrVI 156274 157842 HC_gene_2768_tx_12 1 + 156274 157842 . 2 357,1102 0,467 -chrVI 156286 156521 LC_gene_2870_tx_1 1 - 156286 156521 . 1 236 0 -chrVI 156384 157842 HC_gene_2768_tx_13 5 + 156384 157842 . 1 1459 0 -chrVI 156384 157842 HC_gene_2768_tx_14 1 + 156384 157842 . 2 851,555 0,904 -chrVI 156702 157842 HC_gene_2768_tx_15 10 + 156702 157842 . 1 1141 0 -chrVI 156806 157804 MC_gene_2871_tx_1 1 - 156806 157804 . 1 999 0 -chrVI 157388 157842 HC_gene_2768_tx_16 29 + 157388 157842 . 1 455 0 -chrVI 158178 159090 HC_gene_2872_tx_1 6 - 158178 159090 . 1 913 0 -chrVI 158178 159326 HC_gene_2872_tx_2 1 - 158178 159326 . 1 1149 0 -chrVI 158451 159090 HC_gene_2872_tx_3 1 - 158451 159090 . 1 640 0 -chrVI 158531 159090 HC_gene_2872_tx_4 1 - 158531 159090 . 1 560 0 -chrVI 159278 160353 HC_gene_2769_tx_1 7 + 159278 160353 . 1 1076 0 -chrVI 159278 160428 HC_gene_2769_tx_2 30 + 159278 160428 . 1 1151 0 -chrVI 159487 160428 HC_gene_2769_tx_3 9 + 159487 160428 . 1 942 0 -chrVI 160518 161550 HC_gene_2770_tx_1 13 + 160518 161550 . 1 1033 0 -chrVI 160518 161632 HC_gene_2770_tx_2 13 + 160518 161632 . 1 1115 0 -chrVI 161444 162116 MC_gene_2873_tx_1 1 - 161444 162116 . 1 673 0 -chrVI 161653 161965 MC_gene_2771_tx_1 1 + 161653 161965 . 1 313 0 -chrVI 162415 164833 HC_gene_2772_tx_1 57 + 162415 164833 . 1 2419 0 -chrVI 162415 164833 HC_gene_2772_tx_2 1 + 162415 164833 . 2 1259,1088 0,1331 -chrVI 162415 164833 HC_gene_2772_tx_3 1 + 162415 164833 . 2 1253,1111 0,1308 -chrVI 162415 164833 HC_gene_2772_tx_4 1 + 162415 164833 . 2 1283,1032 0,1387 -chrVI 162415 164964 HC_gene_2772_tx_5 10 + 162415 164964 . 1 2550 0 -chrVI 162561 164833 HC_gene_2772_tx_6 3 + 162561 164833 . 1 2273 0 -chrVI 162561 164964 HC_gene_2772_tx_7 1 + 162561 164964 . 1 2404 0 -chrVI 162612 164833 HC_gene_2772_tx_8 1 + 162612 164833 . 2 511,1627 0,595 -chrVI 162612 164833 HC_gene_2772_tx_9 3 + 162612 164833 . 1 2222 0 -chrVI 163287 164833 HC_gene_2772_tx_10 20 + 163287 164833 . 1 1547 0 -chrVI 163287 164833 HC_gene_2772_tx_11 1 + 163287 164833 . 2 882,603 0,944 -chrVI 163287 164833 HC_gene_2772_tx_12 1 + 163287 164833 . 2 942,549 0,998 -chrVI 163287 164964 HC_gene_2772_tx_13 1 + 163287 164964 . 2 953,675 0,1003 -chrVI 163287 164964 HC_gene_2772_tx_14 2 + 163287 164964 . 1 1678 0 -chrVI 163564 164833 HC_gene_2772_tx_15 11 + 163564 164833 . 1 1270 0 -chrVI 163564 164833 HC_gene_2772_tx_16 1 + 163564 164833 . 2 676,511 0,759 -chrVI 163564 164964 HC_gene_2772_tx_17 1 + 163564 164964 . 1 1401 0 -chrVI 163827 164833 HC_gene_2772_tx_18 10 + 163827 164833 . 1 1007 0 -chrVI 163827 164964 HC_gene_2772_tx_19 1 + 163827 164964 . 1 1138 0 -chrVI 164984 166658 HC_gene_2773_tx_1 88 + 164984 166658 . 1 1675 0 -chrVI 164984 166658 HC_gene_2773_tx_2 1 + 164984 166658 . 2 1014,579 0,1096 -chrVI 164984 166658 HC_gene_2773_tx_3 1 + 164984 166658 . 2 954,673 0,1002 -chrVI 165035 166658 HC_gene_2773_tx_4 1 + 165035 166658 . 2 919,627 0,997 -chrVI 165220 166658 HC_gene_2773_tx_5 1 + 165220 166658 . 2 747,620 0,819 -chrVI 165220 166658 HC_gene_2773_tx_6 7 + 165220 166658 . 1 1439 0 -chrVI 165220 166658 HC_gene_2773_tx_7 1 + 165220 166658 . 2 169,1208 0,231 -chrVI 165320 166385 LC_gene_2874_tx_1 1 - 165320 166385 . 1 1066 0 -chrVI 165700 166658 HC_gene_2773_tx_8 12 + 165700 166658 . 1 959 0 -chrVI 165943 166658 HC_gene_2774_tx_1 24 + 165943 166658 . 1 716 0 -chrVI 166065 166658 HC_gene_2774_tx_2 28 + 166065 166658 . 1 594 0 -chrVI 166065 166769 HC_gene_2774_tx_3 1 + 166065 166769 . 1 705 0 -chrVI 166126 166658 HC_gene_2774_tx_4 11 + 166126 166658 . 1 533 0 -chrVI 166126 166769 HC_gene_2774_tx_5 1 + 166126 166769 . 1 644 0 -chrVI 166579 167149 HC_gene_2875_tx_1 16 - 166579 167149 . 1 571 0 -chrVI 166579 167291 HC_gene_2875_tx_2 144 - 166579 167291 . 1 713 0 -chrVI 166782 167182 LC_gene_2775_tx_1 1 + 166782 167182 . 1 401 0 -chrVI 167642 168400 MC_gene_2876_tx_1 1 - 167642 168400 . 1 759 0 -chrVI 167994 169571 MC_gene_2776_tx_1 1 + 167994 169571 . 1 1578 0 -chrVI 169861 172403 HC_gene_2777_tx_1 10 + 169861 172403 . 1 2543 0 -chrVI 169861 172403 HC_gene_2777_tx_2 1 + 169861 172403 . 2 1861,573 0,1970 -chrVI 170150 172403 HC_gene_2777_tx_3 1 + 170150 172403 . 2 793,1059 0,1195 -chrVI 171596 172403 HC_gene_2777_tx_4 5 + 171596 172403 . 1 808 0 -chrVI 171894 172403 HC_gene_2777_tx_5 14 + 171894 172403 . 1 510 0 -chrVI 172228 173912 HC_gene_2877_tx_1 3 - 172228 173912 . 1 1685 0 -chrVI 172313 172797 HC_gene_2877_tx_3 5 - 172313 172797 . 1 485 0 -chrVI 172313 173387 HC_gene_2877_tx_4 16 - 172313 173387 . 1 1075 0 -chrVI 172313 173517 HC_gene_2877_tx_5 4 - 172313 173517 . 1 1205 0 -chrVI 172313 173912 HC_gene_2877_tx_2 32 - 172313 173912 . 1 1600 0 -chrVI 173347 173517 HC_gene_2877_tx_6 1 - 173347 173517 . 1 171 0 -chrVI 173347 173912 HC_gene_2877_tx_7 1 - 173347 173912 . 1 566 0 -chrVI 174087 174584 HC_gene_2878_tx_1 5 - 174087 174584 . 1 498 0 -chrVI 174087 174827 HC_gene_2878_tx_2 2 - 174087 174827 . 1 741 0 -chrVI 174087 175080 HC_gene_2878_tx_3 1 - 174087 175080 . 1 994 0 -chrVI 174087 175961 HC_gene_2878_tx_4 1 - 174087 175961 . 1 1875 0 -chrVI 174087 176031 HC_gene_2878_tx_5 4 - 174087 176031 . 1 1945 0 -chrVI 174087 176132 HC_gene_2878_tx_6 1 - 174087 176132 . 1 2046 0 -chrVI 174087 176475 HC_gene_2878_tx_7 12 - 174087 176475 . 1 2389 0 -chrVI 174087 176475 HC_gene_2878_tx_8 1 - 174087 176475 . 2 2212,82 0,2307 -chrVI 174195 174955 MC_gene_2778_tx_1 1 + 174195 174955 . 1 761 0 -chrVI 174939 176481 LC_gene_2779_tx_1 1 + 174939 176481 . 1 1543 0 -chrVI 176401 176649 HC_gene_2879_tx_1 2 - 176401 176649 . 1 249 0 -chrVI 176401 179446 HC_gene_2879_tx_2 2 - 176401 179446 . 1 3046 0 -chrVI 176401 180837 HC_gene_2879_tx_8 1 - 176401 180837 . 1 4437 0 -chrVI 176927 177943 HC_gene_2879_tx_12 1 - 176927 177943 . 1 1017 0 -chrVI 176990 177284 HC_gene_2879_tx_14 8 - 176990 177284 . 1 295 0 -chrVI 176990 177422 HC_gene_2879_tx_15 3 - 176990 177422 . 1 433 0 -chrVI 176990 177548 HC_gene_2879_tx_16 5 - 176990 177548 . 1 559 0 -chrVI 176990 177640 HC_gene_2879_tx_17 6 - 176990 177640 . 1 651 0 -chrVI 176990 177943 HC_gene_2879_tx_13 4 - 176990 177943 . 1 954 0 -chrVI 176990 178759 HC_gene_2879_tx_3 2 - 176990 178759 . 1 1770 0 -chrVI 176990 178931 HC_gene_2879_tx_4 1 - 176990 178931 . 1 1942 0 -chrVI 176990 179012 HC_gene_2879_tx_5 3 - 176990 179012 . 1 2023 0 -chrVI 176990 179446 HC_gene_2879_tx_6 3 - 176990 179446 . 1 2457 0 -chrVI 176990 179709 HC_gene_2879_tx_7 2 - 176990 179709 . 1 2720 0 -chrVI 176990 180510 HC_gene_2879_tx_9 1 - 176990 180510 . 1 3521 0 -chrVI 176990 180837 HC_gene_2879_tx_10 1 - 176990 180837 . 2 3215,589 0,3259 -chrVI 176990 180837 HC_gene_2879_tx_11 3 - 176990 180837 . 1 3848 0 -chrVI 177059 177590 MC_gene_2780_tx_1 1 + 177059 177590 . 1 532 0 -chrVI 177126 177521 MC_gene_2780_tx_2 1 + 177126 177521 . 1 396 0 -chrVI 177404 177838 MC_gene_2781_tx_1 1 + 177404 177838 . 1 435 0 -chrVI 182157 182623 HC_gene_2880_tx_1 10 - 182157 182623 . 1 467 0 -chrVI 182157 182940 HC_gene_2880_tx_2 56 - 182157 182940 . 1 784 0 -chrVI 182967 183945 HC_gene_2881_tx_1 15 - 182967 183945 . 1 979 0 -chrVI 182967 184284 HC_gene_2881_tx_2 79 - 182967 184284 . 1 1318 0 -chrVI 184491 191386 HC_gene_2782_tx_1 1 + 184491 191386 . 1 6896 0 -chrVI 188900 191386 HC_gene_2782_tx_2 1 + 188900 191386 . 1 2487 0 -chrVI 189777 191386 HC_gene_2782_tx_3 2 + 189777 191386 . 1 1610 0 -chrVI 191730 192834 LC_gene_2882_tx_1 1 - 191730 192834 . 1 1105 0 -chrVI 191764 193544 HC_gene_2783_tx_1 2 + 191764 193544 . 1 1781 0 -chrVI 192263 193544 HC_gene_2783_tx_2 4 + 192263 193544 . 1 1282 0 -chrVI 192263 193828 HC_gene_2783_tx_3 5 + 192263 193828 . 1 1566 0 -chrVI 192263 193828 HC_gene_2783_tx_4 1 + 192263 193828 . 2 889,626 0,940 -chrVI 192613 193544 HC_gene_2783_tx_5 4 + 192613 193544 . 1 932 0 -chrVI 192613 193828 HC_gene_2783_tx_6 3 + 192613 193828 . 1 1216 0 -chrVI 193740 194243 MC_gene_2883_tx_1 1 - 193740 194243 . 2 190,255 0,249 -chrVI 193803 196305 MC_gene_2884_tx_1 1 - 193803 196305 . 1 2503 0 -chrVI 194717 196425 HC_gene_2784_tx_1 25 + 194717 196425 . 1 1709 0 -chrVI 194920 196425 HC_gene_2784_tx_2 1 + 194920 196425 . 1 1506 0 -chrVI 195943 196425 HC_gene_2784_tx_3 1 + 195943 196425 . 1 483 0 -chrVI 196545 197469 HC_gene_2785_tx_1 1 + 196545 197469 . 1 925 0 -chrVI 196545 197537 HC_gene_2785_tx_2 1 + 196545 197537 . 1 993 0 -chrVI 196769 197469 HC_gene_2785_tx_3 1 + 196769 197469 . 1 701 0 -chrVI 199786 201815 LC_gene_2786_tx_1 1 + 199786 201815 . 1 2030 0 -chrVI 200161 201171 LC_gene_2885_tx_1 1 - 200161 201171 . 1 1011 0 -chrVI 201721 202325 HC_gene_2886_tx_1 24 - 201721 202325 . 1 605 0 -chrVI 201721 202437 HC_gene_2886_tx_2 14 - 201721 202437 . 1 717 0 -chrVI 201721 202695 HC_gene_2886_tx_3 21 - 201721 202695 . 1 975 0 -chrVI 201721 202845 HC_gene_2886_tx_4 10 - 201721 202845 . 1 1125 0 -chrVI 201721 202964 HC_gene_2886_tx_5 12 - 201721 202964 . 1 1244 0 -chrVI 201721 203287 HC_gene_2886_tx_6 11 - 201721 203287 . 1 1567 0 -chrVI 201721 203444 HC_gene_2886_tx_7 10 - 201721 203444 . 2 1567,58 0,1666 -chrVI 201721 203444 HC_gene_2886_tx_8 28 - 201721 203444 . 1 1724 0 -chrVI 201721 203444 HC_gene_2886_tx_9 16 - 201721 203444 . 2 1564,58 0,1666 -chrVI 201721 203444 HC_gene_2886_tx_10 1 - 201721 203444 . 3 1354,174,58 0,1390,1666 -chrVI 201721 203444 HC_gene_2886_tx_11 13 - 201721 203444 . 2 1572,58 0,1666 -chrVI 201721 203444 HC_gene_2886_tx_12 1 - 201721 203444 . 2 1239,370 0,1354 -chrVI 203597 204618 HC_gene_2887_tx_1 1 - 203597 204618 . 1 1022 0 -chrVI 203597 204775 HC_gene_2887_tx_2 2 - 203597 204775 . 1 1179 0 -chrVI 203598 204775 HC_gene_2887_tx_3 1 - 203598 204775 . 1 1178 0 -chrVI 203608 204618 HC_gene_2887_tx_4 1 - 203608 204618 . 1 1011 0 -chrVI 203608 204775 HC_gene_2887_tx_5 1 - 203608 204775 . 1 1168 0 -chrVI 203615 204775 HC_gene_2887_tx_6 1 - 203615 204775 . 1 1161 0 -chrVI 203617 204618 HC_gene_2887_tx_7 2 - 203617 204618 . 1 1002 0 -chrVI 203617 204775 HC_gene_2887_tx_8 4 - 203617 204775 . 1 1159 0 -chrVI 203685 204037 MC_gene_2787_tx_1 1 + 203685 204037 . 1 353 0 -chrVI 204723 205747 MC_gene_2788_tx_1 1 + 204723 205747 . 1 1025 0 -chrVI 205665 207259 HC_gene_2888_tx_1 7 - 205665 207259 . 1 1595 0 -chrVI 206034 207064 HC_gene_2789_tx_1 3 + 206034 207064 . 1 1031 0 -chrVI 207323 207753 MC_gene_2889_tx_1 1 - 207323 207753 . 1 431 0 -chrVI 207376 208427 HC_gene_2790_tx_1 11 + 207376 208427 . 1 1052 0 -chrVI 207444 208427 HC_gene_2790_tx_2 1 + 207444 208427 . 1 984 0 -chrVI 208336 208762 HC_gene_2890_tx_1 13 - 208336 208762 . 1 427 0 -chrVI 208336 209619 HC_gene_2890_tx_2 9 - 208336 209619 . 1 1284 0 -chrVI 208336 210116 HC_gene_2890_tx_3 28 - 208336 210116 . 1 1781 0 -chrVI 210873 213024 HC_gene_2791_tx_1 13 + 210873 213024 . 1 2152 0 -chrVI 210873 213024 HC_gene_2791_tx_2 1 + 210873 213024 . 3 1076,214,617 0,1176,1535 -chrVI 212980 213407 HC_gene_2891_tx_1 3 - 212980 213407 . 1 428 0 -chrVI 213192 216488 HC_gene_2792_tx_1 4 + 213192 216488 . 1 3297 0 -chrVI 213257 216488 HC_gene_2792_tx_2 6 + 213257 216488 . 1 3232 0 -chrVI 213257 216488 HC_gene_2792_tx_3 1 + 213257 216488 . 2 2369,811 0,2421 -chrVI 216541 217234 HC_gene_2892_tx_1 7 - 216541 217234 . 1 694 0 -chrVI 216541 217397 HC_gene_2892_tx_2 5 - 216541 217397 . 1 857 0 -chrVI 216541 217526 HC_gene_2892_tx_3 9 - 216541 217526 . 1 986 0 -chrVI 216541 220142 HC_gene_2892_tx_4 7 - 216541 220142 . 1 3602 0 -chrVI 220250 220804 HC_gene_2893_tx_1 3 - 220250 220804 . 1 555 0 -chrVI 220250 221238 HC_gene_2893_tx_3 3 - 220250 221238 . 1 989 0 -chrVI 220322 220804 HC_gene_2893_tx_2 388 - 220322 220804 . 1 483 0 -chrVI 220322 221238 HC_gene_2893_tx_4 1304 - 220322 221238 . 1 917 0 -chrVI 220322 221443 HC_gene_2893_tx_5 43 - 220322 221443 . 1 1122 0 -chrVI 220322 221443 HC_gene_2893_tx_6 73 - 220322 221443 . 2 946,29 0,1093 -chrVI 220322 221443 HC_gene_2893_tx_7 17 - 220322 221443 . 2 942,29 0,1093 -chrVI 220322 221529 HC_gene_2893_tx_8 25 - 220322 221529 . 2 946,115 0,1093 -chrVI 220322 221529 HC_gene_2893_tx_9 9 - 220322 221529 . 2 942,115 0,1093 -chrVI 221702 222063 MC_gene_2793_tx_1 1 + 221702 222063 . 1 362 0 -chrVI 222067 222445 LC_gene_2794_tx_1 1 + 222067 222445 . 1 379 0 -chrVI 223135 223452 HC_gene_2894_tx_1 6213 - 223135 223452 . 1 318 0 -chrVI 223135 223794 HC_gene_2894_tx_2 111 - 223135 223794 . 1 660 0 -chrVI 223906 224271 MC_gene_2795_tx_1 1 + 223906 224271 . 1 366 0 -chrVI 224175 224394 HC_gene_2895_tx_1 15 - 224175 224394 . 1 220 0 -chrVI 224175 224499 HC_gene_2895_tx_2 44 - 224175 224499 . 1 325 0 -chrVI 224175 224875 HC_gene_2895_tx_3 439 - 224175 224875 . 1 701 0 -chrVI 224175 224875 HC_gene_2895_tx_4 1 - 224175 224875 . 2 519,73 0,628 -chrVI 224175 224875 HC_gene_2895_tx_5 1 - 224175 224875 . 2 388,164 0,537 -chrVI 224175 224875 HC_gene_2895_tx_6 1 - 224175 224875 . 2 264,329 0,372 -chrVI 224175 224875 HC_gene_2895_tx_7 1 - 224175 224875 . 2 584,73 0,628 -chrVI 224175 224875 HC_gene_2895_tx_8 1 - 224175 224875 . 2 439,186 0,515 -chrVI 224175 225840 HC_gene_2895_tx_10 2 - 224175 225840 . 1 1666 0 -chrVI 224175 225994 HC_gene_2895_tx_11 25 - 224175 225994 . 1 1820 0 -chrVI 224175 225994 HC_gene_2895_tx_12 1 - 224175 225994 . 2 307,1431 0,389 -chrVI 224240 224473 MC_gene_2796_tx_1 1 + 224240 224473 . 1 234 0 -chrVI 224244 224875 HC_gene_2895_tx_9 43 - 224244 224875 . 1 632 0 -chrVI 224244 225994 HC_gene_2895_tx_13 3 - 224244 225994 . 1 1751 0 -chrVI 225576 226583 HC_gene_2797_tx_1 2 + 225576 226583 . 1 1008 0 -chrVI 226212 226583 HC_gene_2797_tx_2 177 + 226212 226583 . 1 372 0 -chrVI 226876 227325 MC_gene_2896_tx_1 1 - 226876 227325 . 1 450 0 -chrVI 226941 227478 HC_gene_2798_tx_1 45 + 226941 227478 . 1 538 0 -chrVI 226941 227535 HC_gene_2798_tx_2 1 + 226941 227535 . 1 595 0 -chrVI 227098 227478 HC_gene_2798_tx_3 6 + 227098 227478 . 1 381 0 -chrVI 227353 227725 HC_gene_2897_tx_1 1 - 227353 227725 . 1 373 0 -chrVI 227358 228048 HC_gene_2897_tx_14 1 - 227358 228048 . 1 691 0 -chrVI 227359 228599 HC_gene_2897_tx_61 1 - 227359 228599 . 1 1241 0 -chrVI 227359 229193 HC_gene_2897_tx_73 1 - 227359 229193 . 2 879,634 0,1201 -chrVI 227360 229193 HC_gene_2897_tx_74 1 - 227360 229193 . 1 1834 0 -chrVI 227362 229193 HC_gene_2897_tx_75 1 - 227362 229193 . 1 1832 0 -chrVI 227363 227964 HC_gene_2897_tx_15 1 - 227363 227964 . 1 602 0 -chrVI 227364 227643 HC_gene_2897_tx_132 1 - 227364 227643 . 1 280 0 -chrVI 227364 229193 HC_gene_2897_tx_76 1 - 227364 229193 . 1 1830 0 -chrVI 227365 228048 HC_gene_2897_tx_16 1 - 227365 228048 . 1 684 0 -chrVI 227366 227964 HC_gene_2897_tx_17 1 - 227366 227964 . 1 599 0 -chrVI 227369 227964 HC_gene_2897_tx_18 1 - 227369 227964 . 1 596 0 -chrVI 227373 229193 HC_gene_2897_tx_77 1 - 227373 229193 . 1 1821 0 -chrVI 227375 227725 HC_gene_2897_tx_2 1 - 227375 227725 . 1 351 0 -chrVI 227375 228988 HC_gene_2897_tx_78 1 - 227375 228988 . 1 1614 0 -chrVI 227377 229193 HC_gene_2897_tx_79 2 - 227377 229193 . 1 1817 0 -chrVI 227380 229193 HC_gene_2897_tx_80 2 - 227380 229193 . 1 1814 0 -chrVI 227381 227725 HC_gene_2897_tx_3 1 - 227381 227725 . 1 345 0 -chrVI 227381 227964 HC_gene_2897_tx_19 1 - 227381 227964 . 1 584 0 -chrVI 227381 228048 HC_gene_2897_tx_20 1 - 227381 228048 . 1 668 0 -chrVI 227381 229062 HC_gene_2897_tx_81 1 - 227381 229062 . 1 1682 0 -chrVI 227385 229193 HC_gene_2897_tx_82 1 - 227385 229193 . 1 1809 0 -chrVI 227386 227725 HC_gene_2897_tx_4 1 - 227386 227725 . 1 340 0 -chrVI 227386 227964 HC_gene_2897_tx_21 1 - 227386 227964 . 1 579 0 -chrVI 227386 229062 HC_gene_2897_tx_83 1 - 227386 229062 . 1 1677 0 -chrVI 227386 229193 HC_gene_2897_tx_84 2 - 227386 229193 . 1 1808 0 -chrVI 227387 227643 HC_gene_2897_tx_133 1 - 227387 227643 . 1 257 0 -chrVI 227387 227725 HC_gene_2897_tx_5 2 - 227387 227725 . 1 339 0 -chrVI 227387 227875 HC_gene_2897_tx_22 2 - 227387 227875 . 1 489 0 -chrVI 227387 228048 HC_gene_2897_tx_23 1 - 227387 228048 . 1 662 0 -chrVI 227387 228048 HC_gene_2897_tx_24 1 - 227387 228048 . 2 503,84 0,578 -chrVI 227387 228988 HC_gene_2897_tx_85 1 - 227387 228988 . 1 1602 0 -chrVI 227387 229193 HC_gene_2897_tx_86 4 - 227387 229193 . 1 1807 0 -chrVI 227391 227875 HC_gene_2897_tx_25 1 - 227391 227875 . 1 485 0 -chrVI 227391 229193 HC_gene_2897_tx_87 1 - 227391 229193 . 1 1803 0 -chrVI 227392 227643 HC_gene_2897_tx_134 3 - 227392 227643 . 1 252 0 -chrVI 227392 227725 HC_gene_2897_tx_6 6 - 227392 227725 . 1 334 0 -chrVI 227392 227875 HC_gene_2897_tx_26 5 - 227392 227875 . 1 484 0 -chrVI 227392 227875 HC_gene_2897_tx_27 1 - 227392 227875 . 2 230,171 0,313 -chrVI 227392 227964 HC_gene_2897_tx_28 7 - 227392 227964 . 1 573 0 -chrVI 227392 228048 HC_gene_2897_tx_29 3 - 227392 228048 . 1 657 0 -chrVI 227392 228599 HC_gene_2897_tx_62 4 - 227392 228599 . 1 1208 0 -chrVI 227392 228988 HC_gene_2897_tx_88 2 - 227392 228988 . 1 1597 0 -chrVI 227392 229062 HC_gene_2897_tx_89 5 - 227392 229062 . 1 1671 0 -chrVI 227392 229193 HC_gene_2897_tx_90 11 - 227392 229193 . 1 1802 0 -chrVI 227392 229193 HC_gene_2897_tx_91 1 - 227392 229193 . 2 201,1531 0,271 -chrVI 227393 227725 HC_gene_2897_tx_7 2 - 227393 227725 . 1 333 0 -chrVI 227393 227964 HC_gene_2897_tx_30 1 - 227393 227964 . 1 572 0 -chrVI 227393 228599 HC_gene_2897_tx_63 3 - 227393 228599 . 1 1207 0 -chrVI 227393 229193 HC_gene_2897_tx_92 3 - 227393 229193 . 1 1801 0 -chrVI 227395 227725 HC_gene_2897_tx_8 1 - 227395 227725 . 1 331 0 -chrVI 227395 228048 HC_gene_2897_tx_31 1 - 227395 228048 . 1 654 0 -chrVI 227396 229193 HC_gene_2897_tx_93 1 - 227396 229193 . 1 1798 0 -chrVI 227397 227964 HC_gene_2897_tx_32 1 - 227397 227964 . 1 568 0 -chrVI 227397 229193 HC_gene_2897_tx_94 1 - 227397 229193 . 1 1797 0 -chrVI 227398 227875 HC_gene_2897_tx_33 1 - 227398 227875 . 1 478 0 -chrVI 227398 229193 HC_gene_2897_tx_95 1 - 227398 229193 . 1 1796 0 -chrVI 227400 227643 HC_gene_2897_tx_135 2 - 227400 227643 . 1 244 0 -chrVI 227400 227964 HC_gene_2897_tx_34 1 - 227400 227964 . 1 565 0 -chrVI 227400 228048 HC_gene_2897_tx_35 2 - 227400 228048 . 1 649 0 -chrVI 227400 229062 HC_gene_2897_tx_96 2 - 227400 229062 . 1 1663 0 -chrVI 227400 229193 HC_gene_2897_tx_97 7 - 227400 229193 . 1 1794 0 -chrVI 227401 227964 HC_gene_2897_tx_36 1 - 227401 227964 . 1 564 0 -chrVI 227401 228599 HC_gene_2897_tx_64 2 - 227401 228599 . 1 1199 0 -chrVI 227402 228599 HC_gene_2897_tx_65 1 - 227402 228599 . 1 1198 0 -chrVI 227403 227964 HC_gene_2897_tx_37 1 - 227403 227964 . 1 562 0 -chrVI 227403 228048 HC_gene_2897_tx_38 2 - 227403 228048 . 1 646 0 -chrVI 227403 228599 HC_gene_2897_tx_66 1 - 227403 228599 . 1 1197 0 -chrVI 227403 229062 HC_gene_2897_tx_98 1 - 227403 229062 . 1 1660 0 -chrVI 227403 229193 HC_gene_2897_tx_99 4 - 227403 229193 . 1 1791 0 -chrVI 227404 227725 HC_gene_2897_tx_9 1 - 227404 227725 . 1 322 0 -chrVI 227404 227964 HC_gene_2897_tx_39 4 - 227404 227964 . 1 561 0 -chrVI 227404 228048 HC_gene_2897_tx_40 1 - 227404 228048 . 1 645 0 -chrVI 227404 228599 HC_gene_2897_tx_67 1 - 227404 228599 . 1 1196 0 -chrVI 227404 228988 HC_gene_2897_tx_100 1 - 227404 228988 . 1 1585 0 -chrVI 227404 228988 HC_gene_2897_tx_101 1 - 227404 228988 . 2 520,915 0,670 -chrVI 227404 229062 HC_gene_2897_tx_102 2 - 227404 229062 . 1 1659 0 -chrVI 227404 229193 HC_gene_2897_tx_103 2 - 227404 229193 . 1 1790 0 -chrVI 227405 227875 HC_gene_2897_tx_41 1 - 227405 227875 . 1 471 0 -chrVI 227405 228048 HC_gene_2897_tx_42 1 - 227405 228048 . 1 644 0 -chrVI 227405 228988 HC_gene_2897_tx_104 1 - 227405 228988 . 1 1584 0 -chrVI 227405 229062 HC_gene_2897_tx_105 1 - 227405 229062 . 1 1658 0 -chrVI 227405 229193 HC_gene_2897_tx_106 3 - 227405 229193 . 1 1789 0 -chrVI 227406 228599 HC_gene_2897_tx_68 1 - 227406 228599 . 1 1194 0 -chrVI 227407 227725 HC_gene_2897_tx_10 1 - 227407 227725 . 1 319 0 -chrVI 227407 228048 HC_gene_2897_tx_43 1 - 227407 228048 . 1 642 0 -chrVI 227407 229193 HC_gene_2897_tx_107 1 - 227407 229193 . 2 668,967 0,820 -chrVI 227408 229193 HC_gene_2897_tx_108 1 - 227408 229193 . 1 1786 0 -chrVI 227410 227725 HC_gene_2897_tx_11 1 - 227410 227725 . 1 316 0 -chrVI 227410 227875 HC_gene_2897_tx_44 3 - 227410 227875 . 1 466 0 -chrVI 227410 227964 HC_gene_2897_tx_45 1 - 227410 227964 . 1 555 0 -chrVI 227410 229062 HC_gene_2897_tx_109 1 - 227410 229062 . 1 1653 0 -chrVI 227410 229193 HC_gene_2897_tx_110 2 - 227410 229193 . 1 1784 0 -chrVI 227413 227643 HC_gene_2897_tx_136 1 - 227413 227643 . 1 231 0 -chrVI 227413 227725 HC_gene_2897_tx_12 2 - 227413 227725 . 1 313 0 -chrVI 227413 228048 HC_gene_2897_tx_46 3 - 227413 228048 . 1 636 0 -chrVI 227413 229193 HC_gene_2897_tx_111 3 - 227413 229193 . 1 1781 0 -chrVI 227413 229193 HC_gene_2897_tx_112 1 - 227413 229193 . 2 238,1450 0,331 -chrVI 227414 228048 HC_gene_2897_tx_47 1 - 227414 228048 . 1 635 0 -chrVI 227415 228048 HC_gene_2897_tx_48 3 - 227415 228048 . 1 634 0 -chrVI 227415 229193 HC_gene_2897_tx_113 2 - 227415 229193 . 1 1779 0 -chrVI 227416 229193 HC_gene_2897_tx_114 1 - 227416 229193 . 1 1778 0 -chrVI 227417 227964 HC_gene_2897_tx_49 1 - 227417 227964 . 1 548 0 -chrVI 227417 228048 HC_gene_2897_tx_50 1 - 227417 228048 . 1 632 0 -chrVI 227417 229193 HC_gene_2897_tx_115 1 - 227417 229193 . 1 1777 0 -chrVI 227418 229193 HC_gene_2897_tx_116 1 - 227418 229193 . 2 250,1444 0,332 -chrVI 227421 228048 HC_gene_2897_tx_51 1 - 227421 228048 . 1 628 0 -chrVI 227421 229193 HC_gene_2897_tx_117 1 - 227421 229193 . 1 1773 0 -chrVI 227423 227964 HC_gene_2897_tx_52 1 - 227423 227964 . 1 542 0 -chrVI 227425 227964 HC_gene_2897_tx_53 2 - 227425 227964 . 1 540 0 -chrVI 227425 228048 HC_gene_2897_tx_54 2 - 227425 228048 . 1 624 0 -chrVI 227425 229193 HC_gene_2897_tx_118 1 - 227425 229193 . 1 1769 0 -chrVI 227427 229193 HC_gene_2897_tx_119 1 - 227427 229193 . 1 1767 0 -chrVI 227428 227964 HC_gene_2897_tx_55 2 - 227428 227964 . 1 537 0 -chrVI 227429 227964 HC_gene_2897_tx_56 1 - 227429 227964 . 1 536 0 -chrVI 227429 229193 HC_gene_2897_tx_120 1 - 227429 229193 . 1 1765 0 -chrVI 227430 228048 HC_gene_2897_tx_57 1 - 227430 228048 . 1 619 0 -chrVI 227432 228988 HC_gene_2897_tx_121 1 - 227432 228988 . 1 1557 0 -chrVI 227434 229193 HC_gene_2897_tx_122 1 - 227434 229193 . 1 1760 0 -chrVI 227440 228599 HC_gene_2897_tx_69 1 - 227440 228599 . 1 1160 0 -chrVI 227440 229193 HC_gene_2897_tx_123 2 - 227440 229193 . 1 1754 0 -chrVI 227441 229193 HC_gene_2897_tx_124 1 - 227441 229193 . 1 1753 0 -chrVI 227442 229193 HC_gene_2897_tx_125 1 - 227442 229193 . 1 1752 0 -chrVI 227444 227875 HC_gene_2897_tx_58 1 - 227444 227875 . 1 432 0 -chrVI 227444 228048 HC_gene_2897_tx_59 1 - 227444 228048 . 1 605 0 -chrVI 227447 227725 HC_gene_2897_tx_13 1 - 227447 227725 . 1 279 0 -chrVI 227447 228988 HC_gene_2897_tx_126 1 - 227447 228988 . 1 1542 0 -chrVI 227447 229062 HC_gene_2897_tx_127 1 - 227447 229062 . 1 1616 0 -chrVI 227447 229193 HC_gene_2897_tx_128 1 - 227447 229193 . 1 1747 0 -chrVI 227448 228599 HC_gene_2897_tx_70 1 - 227448 228599 . 1 1152 0 -chrVI 227449 228599 HC_gene_2897_tx_71 1 - 227449 228599 . 1 1151 0 -chrVI 227451 228048 HC_gene_2897_tx_60 1 - 227451 228048 . 1 598 0 -chrVI 227453 229193 HC_gene_2897_tx_129 1 - 227453 229193 . 1 1741 0 -chrVI 227454 229193 HC_gene_2897_tx_130 1 - 227454 229193 . 1 1740 0 -chrVI 227456 228599 HC_gene_2897_tx_72 2 - 227456 228599 . 1 1144 0 -chrVI 227461 229193 HC_gene_2897_tx_131 1 - 227461 229193 . 1 1733 0 -chrVI 229385 232032 HC_gene_2799_tx_1 10 + 229385 232032 . 1 2648 0 -chrVI 229385 232032 HC_gene_2799_tx_2 1 + 229385 232032 . 2 1532,1038 0,1610 -chrVI 229485 232032 HC_gene_2799_tx_3 1 + 229485 232032 . 1 2548 0 -chrVI 231947 233666 HC_gene_2898_tx_1 18 - 231947 233666 . 1 1720 0 -chrVI 231947 233666 HC_gene_2898_tx_2 1 - 231947 233666 . 2 736,877 0,843 -chrVI 233951 237326 HC_gene_2800_tx_1 7 + 233951 237326 . 1 3376 0 -chrVI 233951 237326 HC_gene_2800_tx_2 1 + 233951 237326 . 2 1684,1594 0,1782 -chrVI 234574 237326 HC_gene_2800_tx_3 2 + 234574 237326 . 1 2753 0 -chrVI 234851 237326 HC_gene_2800_tx_4 1 + 234851 237326 . 1 2476 0 -chrVI 234912 237326 HC_gene_2800_tx_5 4 + 234912 237326 . 1 2415 0 -chrVI 235573 237326 HC_gene_2800_tx_6 3 + 235573 237326 . 1 1754 0 -chrVI 235573 237326 HC_gene_2800_tx_7 1 + 235573 237326 . 2 372,1223 0,531 -chrVI 235953 237326 HC_gene_2800_tx_8 9 + 235953 237326 . 1 1374 0 -chrVI 236914 237326 HC_gene_2800_tx_9 23 + 236914 237326 . 1 413 0 -chrVI 237184 237681 HC_gene_2899_tx_1 12 - 237184 237681 . 1 498 0 -chrVI 237184 238279 HC_gene_2899_tx_2 40 - 237184 238279 . 1 1096 0 -chrVI 237184 238279 HC_gene_2899_tx_3 1 - 237184 238279 . 3 247,230,295 0,342,801 -chrVI 237306 238279 HC_gene_2899_tx_4 1 - 237306 238279 . 2 558,365 0,609 -chrVI 237306 238279 HC_gene_2899_tx_5 9 - 237306 238279 . 1 974 0 -chrVI 238409 239156 HC_gene_2801_tx_1 30 + 238409 239156 . 1 748 0 -chrVI 238409 240006 HC_gene_2801_tx_2 2 + 238409 240006 . 1 1598 0 -chrVI 239058 239594 HC_gene_2900_tx_1 10 - 239058 239594 . 1 537 0 -chrVI 239058 239836 HC_gene_2900_tx_2 20 - 239058 239836 . 1 779 0 -chrVI 239937 240459 HC_gene_2901_tx_1 47 - 239937 240459 . 1 523 0 -chrVI 239937 240606 HC_gene_2901_tx_2 15 - 239937 240606 . 1 670 0 -chrVI 239937 240660 HC_gene_2901_tx_3 25 - 239937 240660 . 1 724 0 -chrVI 239937 240722 HC_gene_2901_tx_4 1 - 239937 240722 . 2 469,104 0,682 -chrVI 239937 240722 HC_gene_2901_tx_5 16 - 239937 240722 . 1 786 0 -chrVI 239937 241037 HC_gene_2901_tx_6 27 - 239937 241037 . 1 1101 0 -chrVI 239937 241037 HC_gene_2901_tx_7 1 - 239937 241037 . 2 573,117 0,984 -chrVI 239937 241302 HC_gene_2901_tx_8 13 - 239937 241302 . 1 1366 0 -chrVI 239937 241456 HC_gene_2901_tx_9 198 - 239937 241456 . 1 1520 0 -chrVI 239937 241456 HC_gene_2901_tx_10 1 - 239937 241456 . 2 775,480 0,1040 -chrVI 239937 241456 HC_gene_2901_tx_11 1 - 239937 241456 . 2 197,1240 0,280 -chrVI 239937 241843 HC_gene_2901_tx_12 1 - 239937 241843 . 1 1907 0 -chrVI 241981 243067 HC_gene_2802_tx_1 1 + 241981 243067 . 2 29,986 0,101 -chrVI 241981 243067 HC_gene_2802_tx_2 19 + 241981 243067 . 1 1087 0 -chrVI 242828 244161 HC_gene_2902_tx_1 4 - 242828 244161 . 1 1334 0 -chrVI 242996 243886 HC_gene_2902_tx_3 3 - 242996 243886 . 1 891 0 -chrVI 242996 244161 HC_gene_2902_tx_2 10 - 242996 244161 . 1 1166 0 -chrVI 242996 244744 HC_gene_2902_tx_4 1 - 242996 244744 . 1 1749 0 -chrVI 242996 245201 HC_gene_2902_tx_5 1 - 242996 245201 . 1 2206 0 -chrVI 244200 244575 HC_gene_2902_tx_6 19 - 244200 244575 . 1 376 0 -chrVI 244200 244744 HC_gene_2902_tx_7 20 - 244200 244744 . 1 545 0 -chrVI 244200 245040 HC_gene_2902_tx_8 11 - 244200 245040 . 1 841 0 -chrVI 244200 245165 HC_gene_2902_tx_9 1 - 244200 245165 . 1 966 0 -chrVI 244200 245168 HC_gene_2902_tx_10 2 - 244200 245168 . 1 969 0 -chrVI 244200 245169 HC_gene_2902_tx_11 2 - 244200 245169 . 1 970 0 -chrVI 244200 245201 HC_gene_2902_tx_12 92 - 244200 245201 . 1 1002 0 -chrVI 245027 245752 LC_gene_2803_tx_1 1 + 245027 245752 . 1 726 0 -chrVI 245311 245934 MC_gene_2903_tx_1 1 - 245311 245934 . 1 624 0 -chrVI 246114 248186 HC_gene_2804_tx_1 1 + 246114 248186 . 2 1067,930 0,1143 -chrVI 246114 248186 HC_gene_2804_tx_2 12 + 246114 248186 . 1 2073 0 -chrVI 246114 248186 HC_gene_2804_tx_3 1 + 246114 248186 . 2 903,1076 0,997 -chrVI 246114 248186 HC_gene_2804_tx_4 1 + 246114 248186 . 2 369,1222 0,851 -chrVI 246114 248186 HC_gene_2804_tx_5 1 + 246114 248186 . 2 1137,818 0,1255 -chrVI 248357 249014 HC_gene_2805_tx_1 202 + 248357 249014 . 1 658 0 -chrVI 248394 248595 MC_gene_2904_tx_1 1 - 248394 248595 . 1 202 0 -chrVI 248520 249014 HC_gene_2805_tx_2 12 + 248520 249014 . 1 495 0 -chrVI 248620 249014 HC_gene_2805_tx_3 19 + 248620 249014 . 1 395 0 -chrVI 248990 249631 HC_gene_2905_tx_1 57 - 248990 249631 . 1 642 0 -chrVI 248990 249711 HC_gene_2905_tx_2 10 - 248990 249711 . 1 722 0 -chrVI 248990 249920 HC_gene_2905_tx_3 272 - 248990 249920 . 1 931 0 -chrVI 250090 250566 HC_gene_2906_tx_1 29 - 250090 250566 . 1 477 0 -chrVI 250090 250799 HC_gene_2906_tx_2 22 - 250090 250799 . 1 710 0 -chrVI 250090 250914 HC_gene_2906_tx_3 26 - 250090 250914 . 1 825 0 -chrVI 250090 251270 HC_gene_2906_tx_4 1 - 250090 251270 . 2 918,203 0,978 -chrVI 250090 251270 HC_gene_2906_tx_5 11 - 250090 251270 . 1 1181 0 -chrVI 250090 251816 HC_gene_2906_tx_6 1 - 250090 251816 . 2 604,1022 0,705 -chrVI 250090 251857 HC_gene_2906_tx_7 98 - 250090 251857 . 1 1768 0 -chrVI 250090 251857 HC_gene_2906_tx_8 1 - 250090 251857 . 2 745,973 0,795 -chrVI 250090 251857 HC_gene_2906_tx_9 1 - 250090 251857 . 2 727,974 0,794 -chrVI 250090 251857 HC_gene_2906_tx_10 1 - 250090 251857 . 2 742,934 0,834 -chrVI 250090 251857 HC_gene_2906_tx_11 1 - 250090 251857 . 2 742,973 0,795 -chrVI 250090 251857 HC_gene_2906_tx_12 1 - 250090 251857 . 2 759,922 0,846 -chrVI 250090 251857 HC_gene_2906_tx_13 1 - 250090 251857 . 2 711,1000 0,768 -chrVI 250090 251857 HC_gene_2906_tx_14 1 - 250090 251857 . 2 561,838 0,930 -chrVI 250164 250541 MC_gene_2806_tx_1 1 + 250164 250541 . 1 378 0 -chrVI 250744 251925 LC_gene_2807_tx_1 1 + 250744 251925 . 1 1182 0 -chrVI 251947 252280 MC_gene_2907_tx_1 1 - 251947 252280 . 1 334 0 -chrVI 252089 252363 HC_gene_2808_tx_1 1 + 252089 252363 . 1 275 0 -chrVI 252464 253372 HC_gene_2809_tx_1 194 + 252464 253372 . 1 909 0 -chrVI 252464 253454 HC_gene_2809_tx_2 11 + 252464 253454 . 1 991 0 -chrVI 252464 253528 HC_gene_2809_tx_3 59 + 252464 253528 . 1 1065 0 -chrVI 252464 253528 HC_gene_2809_tx_4 1 + 252464 253528 . 2 263,507 0,558 -chrVI 252692 253372 HC_gene_2809_tx_5 11 + 252692 253372 . 1 681 0 -chrVI 252692 253372 HC_gene_2809_tx_6 1 + 252692 253372 . 2 462,157 0,524 -chrVI 252692 253454 HC_gene_2809_tx_7 1 + 252692 253454 . 1 763 0 -chrVI 252692 253528 HC_gene_2809_tx_8 6 + 252692 253528 . 1 837 0 -chrVI 253064 253372 HC_gene_2809_tx_9 9 + 253064 253372 . 1 309 0 -chrVI 253064 253372 HC_gene_2809_tx_10 1 + 253064 253372 . 2 34,232 0,77 -chrVI 253064 253454 HC_gene_2809_tx_12 1 + 253064 253454 . 1 391 0 -chrVI 253064 253528 HC_gene_2809_tx_13 4 + 253064 253528 . 1 465 0 -chrVI 253123 253372 HC_gene_2809_tx_11 29 + 253123 253372 . 1 250 0 -chrVI 253123 253454 HC_gene_2809_tx_14 3 + 253123 253454 . 1 332 0 -chrVI 253123 253528 HC_gene_2809_tx_15 11 + 253123 253528 . 1 406 0 -chrVI 253422 253947 HC_gene_2908_tx_1 69 - 253422 253947 . 1 526 0 -chrVI 253422 254077 HC_gene_2908_tx_2 82 - 253422 254077 . 1 656 0 -chrVI 253422 254077 HC_gene_2908_tx_3 1 - 253422 254077 . 2 410,181 0,475 -chrVI 253422 254077 HC_gene_2908_tx_4 1 - 253422 254077 . 2 35,561 0,95 -chrVI 253422 254077 HC_gene_2908_tx_5 1 - 253422 254077 . 2 54,541 0,115 -chrVI 253422 254296 HC_gene_2908_tx_11 71 - 253422 254296 . 1 875 0 -chrVI 253422 254296 HC_gene_2908_tx_12 1 - 253422 254296 . 2 107,707 0,168 -chrVI 253422 254520 HC_gene_2908_tx_14 55 - 253422 254520 . 1 1099 0 -chrVI 253422 254520 HC_gene_2908_tx_15 1 - 253422 254520 . 2 62,974 0,125 -chrVI 253422 254674 HC_gene_2908_tx_16 6 - 253422 254674 . 1 1253 0 -chrVI 253422 254749 HC_gene_2908_tx_17 37 - 253422 254749 . 1 1328 0 -chrVI 253422 254749 HC_gene_2908_tx_18 1 - 253422 254749 . 2 77,1141 0,187 -chrVI 253422 254870 HC_gene_2908_tx_19 10 - 253422 254870 . 1 1449 0 -chrVI 253422 254870 HC_gene_2908_tx_20 1 - 253422 254870 . 2 276,1052 0,397 -chrVI 253422 254935 HC_gene_2908_tx_21 6 - 253422 254935 . 1 1514 0 -chrVI 253422 255024 HC_gene_2908_tx_22 26 - 253422 255024 . 1 1603 0 -chrVI 253422 255024 HC_gene_2908_tx_23 1 - 253422 255024 . 2 54,1473 0,130 -chrVI 253422 255146 HC_gene_2908_tx_24 297 - 253422 255146 . 1 1725 0 -chrVI 253422 255146 HC_gene_2908_tx_25 1 - 253422 255146 . 2 1185,359 0,1366 -chrVI 253422 255146 HC_gene_2908_tx_26 1 - 253422 255146 . 2 730,899 0,826 -chrVI 253422 255146 HC_gene_2908_tx_27 1 - 253422 255146 . 2 679,908 0,817 -chrVI 253422 255146 HC_gene_2908_tx_28 1 - 253422 255146 . 2 35,1610 0,115 -chrVI 253422 255146 HC_gene_2908_tx_29 1 - 253422 255146 . 2 1203,458 0,1267 -chrVI 253422 255146 HC_gene_2908_tx_30 1 - 253422 255146 . 3 911,194,458 0,985,1267 -chrVI 253422 255146 HC_gene_2908_tx_31 1 - 253422 255146 . 2 54,1496 0,229 -chrVI 253422 255146 HC_gene_2908_tx_32 1 - 253422 255146 . 2 568,335 0,1390 -chrVI 253422 255146 HC_gene_2908_tx_33 1 - 253422 255146 . 2 54,1591 0,134 -chrVI 253422 255146 HC_gene_2908_tx_34 1 - 253422 255146 . 2 616,1051 0,674 -chrVI 253422 255146 HC_gene_2908_tx_35 1 - 253422 255146 . 2 320,1093 0,632 -chrVI 253422 255146 HC_gene_2908_tx_36 1 - 253422 255146 . 2 62,1565 0,160 -chrVI 253422 255146 HC_gene_2908_tx_37 1 - 253422 255146 . 2 686,959 0,766 -chrVI 253422 255146 HC_gene_2908_tx_38 1 - 253422 255146 . 2 1524,128 0,1597 -chrVI 253422 255326 HC_gene_2908_tx_39 3 - 253422 255326 . 1 1905 0 -chrVI 253518 253947 HC_gene_2908_tx_6 3 - 253518 253947 . 1 430 0 -chrVI 253519 255146 HC_gene_2908_tx_40 1 - 253519 255146 . 1 1628 0 -chrVI 253520 254674 HC_gene_2908_tx_41 1 - 253520 254674 . 1 1155 0 -chrVI 253520 254935 HC_gene_2908_tx_42 1 - 253520 254935 . 1 1416 0 -chrVI 253520 255024 HC_gene_2908_tx_43 1 - 253520 255024 . 1 1505 0 -chrVI 253521 253947 HC_gene_2908_tx_7 1 - 253521 253947 . 1 427 0 -chrVI 253522 254077 HC_gene_2908_tx_8 1 - 253522 254077 . 1 556 0 -chrVI 253522 254674 HC_gene_2908_tx_44 1 - 253522 254674 . 1 1153 0 -chrVI 253522 255146 HC_gene_2908_tx_45 3 - 253522 255146 . 1 1625 0 -chrVI 253523 254935 HC_gene_2908_tx_46 1 - 253523 254935 . 1 1413 0 -chrVI 253523 255146 HC_gene_2908_tx_47 2 - 253523 255146 . 1 1624 0 -chrVI 253524 254749 HC_gene_2908_tx_48 1 - 253524 254749 . 1 1226 0 -chrVI 253524 255146 HC_gene_2908_tx_49 1 - 253524 255146 . 1 1623 0 -chrVI 253526 253947 HC_gene_2908_tx_9 3 - 253526 253947 . 1 422 0 -chrVI 253526 254077 HC_gene_2908_tx_10 4 - 253526 254077 . 1 552 0 -chrVI 253526 254296 HC_gene_2908_tx_13 4 - 253526 254296 . 1 771 0 -chrVI 253526 254520 HC_gene_2908_tx_50 1 - 253526 254520 . 1 995 0 -chrVI 253526 254674 HC_gene_2908_tx_51 1 - 253526 254674 . 1 1149 0 -chrVI 253526 254749 HC_gene_2908_tx_52 1 - 253526 254749 . 1 1224 0 -chrVI 253526 255146 HC_gene_2908_tx_53 4 - 253526 255146 . 1 1621 0 -chrVI 255610 256491 MC_gene_2810_tx_1 1 + 255610 256491 . 1 882 0 -chrVI 255739 257027 MC_gene_2811_tx_1 1 + 255739 257027 . 1 1289 0 -chrVI 255870 256769 MC_gene_2811_tx_3 1 + 255870 256769 . 1 900 0 -chrVI 255949 257064 MC_gene_2811_tx_2 1 + 255949 257064 . 1 1116 0 -chrVI 256498 257681 MC_gene_2812_tx_1 1 + 256498 257681 . 1 1184 0 -chrVI 256791 258702 MC_gene_2813_tx_1 1 + 256791 258702 . 1 1912 0 -chrVI 256937 260036 LC_gene_2909_tx_1 1 - 256937 260036 . 1 3100 0 -chrVI 260948 261716 MC_gene_2814_tx_1 1 + 260948 261716 . 1 769 0 -chrVI 261762 262049 MC_gene_2815_tx_1 1 + 261762 262049 . 1 288 0 -chrVI 262470 262775 HC_gene_2910_tx_1 1 - 262470 262775 . 1 306 0 -chrVI 262470 262831 HC_gene_2910_tx_2 3 - 262470 262831 . 1 362 0 -chrVI 262470 263142 HC_gene_2910_tx_3 10 - 262470 263142 . 1 673 0 -chrVI 262568 262831 HC_gene_2910_tx_5 1 - 262568 262831 . 1 264 0 -chrVI 262568 263142 HC_gene_2910_tx_4 7 - 262568 263142 . 1 575 0 -chrVI 262568 263326 HC_gene_2910_tx_6 1 - 262568 263326 . 1 759 0 -chrVI 263914 265707 HC_gene_2816_tx_1 2 + 263914 265707 . 1 1794 0 -chrVI 263987 265707 HC_gene_2816_tx_2 3 + 263987 265707 . 1 1721 0 -chrVI 264178 265707 HC_gene_2816_tx_3 76 + 264178 265707 . 1 1530 0 -chrVI 264285 265707 HC_gene_2816_tx_4 13 + 264285 265707 . 1 1423 0 -chrVI 264461 265707 HC_gene_2816_tx_5 11 + 264461 265707 . 1 1247 0 -chrVI 265839 266259 LC_gene_2817_tx_1 1 + 265839 266259 . 1 421 0 -chrVI 265904 266678 MC_gene_2911_tx_1 1 - 265904 266678 . 1 775 0 -chrVI 266164 267390 MC_gene_2912_tx_1 1 - 266164 267390 . 1 1227 0 -chrVI 267098 269069 LC_gene_2818_tx_1 1 + 267098 269069 . 1 1972 0 -chrVII 8410 10049 LC_gene_2913_tx_1 1 + 8410 10049 . 2 199,1289 0,351 -chrVII 9430 10188 LC_gene_3360_tx_1 1 - 9430 10188 . 1 759 0 -chrVII 10447 11047 HC_gene_2914_tx_1 5 + 10447 11047 . 1 601 0 -chrVII 10447 11973 HC_gene_2914_tx_2 1 + 10447 11973 . 1 1527 0 -chrVII 11864 14264 HC_gene_3361_tx_1 1 - 11864 14264 . 1 2401 0 -chrVII 11864 14463 HC_gene_3361_tx_2 1 - 11864 14463 . 1 2600 0 -chrVII 12290 13587 LC_gene_2915_tx_1 1 + 12290 13587 . 1 1298 0 -chrVII 12361 13138 HC_gene_3361_tx_5 6 - 12361 13138 . 1 778 0 -chrVII 12361 14264 HC_gene_3361_tx_3 36 - 12361 14264 . 1 1904 0 -chrVII 12361 14463 HC_gene_3361_tx_4 6 - 12361 14463 . 1 2103 0 -chrVII 14465 16433 HC_gene_2916_tx_1 1 + 14465 16433 . 1 1969 0 -chrVII 14465 16487 HC_gene_2916_tx_2 3 + 14465 16487 . 1 2023 0 -chrVII 14660 16433 HC_gene_2916_tx_3 2 + 14660 16433 . 1 1774 0 -chrVII 14660 16487 HC_gene_2916_tx_4 19 + 14660 16487 . 1 1828 0 -chrVII 15018 16433 HC_gene_2916_tx_5 6 + 15018 16433 . 1 1416 0 -chrVII 15018 16487 HC_gene_2916_tx_6 8 + 15018 16487 . 1 1470 0 -chrVII 15110 16433 HC_gene_2916_tx_7 2 + 15110 16433 . 1 1324 0 -chrVII 15110 16487 HC_gene_2916_tx_8 1 + 15110 16487 . 1 1378 0 -chrVII 16390 16782 MC_gene_3362_tx_1 1 - 16390 16782 . 1 393 0 -chrVII 16512 17121 MC_gene_2917_tx_1 1 + 16512 17121 . 1 610 0 -chrVII 17267 17692 HC_gene_3363_tx_1 13 - 17267 17692 . 1 426 0 -chrVII 18919 22204 HC_gene_2918_tx_1 5 + 18919 22204 . 1 3286 0 -chrVII 20079 23082 HC_gene_3364_tx_1 1 - 20079 23082 . 1 3004 0 -chrVII 20644 22204 HC_gene_2918_tx_2 7 + 20644 22204 . 1 1561 0 -chrVII 20932 22204 HC_gene_2918_tx_3 10 + 20932 22204 . 1 1273 0 -chrVII 22294 23372 HC_gene_2919_tx_1 1 + 22294 23372 . 2 530,484 0,595 -chrVII 22294 23399 HC_gene_2919_tx_2 1 + 22294 23399 . 1 1106 0 -chrVII 22294 23860 HC_gene_2919_tx_3 6 + 22294 23860 . 1 1567 0 -chrVII 22294 23860 HC_gene_2919_tx_4 1 + 22294 23860 . 2 739,626 0,941 -chrVII 22294 23942 HC_gene_2919_tx_5 2 + 22294 23942 . 1 1649 0 -chrVII 22521 23860 HC_gene_2919_tx_6 1 + 22521 23860 . 1 1340 0 -chrVII 22521 23942 HC_gene_2919_tx_7 7 + 22521 23942 . 1 1422 0 -chrVII 23887 25468 HC_gene_2920_tx_1 54 + 23887 25468 . 1 1582 0 -chrVII 23887 25584 HC_gene_2920_tx_2 1141 + 23887 25584 . 1 1698 0 -chrVII 24235 25468 HC_gene_2920_tx_3 7 + 24235 25468 . 1 1234 0 -chrVII 24235 25584 HC_gene_2920_tx_4 193 + 24235 25584 . 1 1350 0 -chrVII 24319 25468 HC_gene_2920_tx_5 8 + 24319 25468 . 1 1150 0 -chrVII 24319 25584 HC_gene_2920_tx_6 61 + 24319 25584 . 1 1266 0 -chrVII 24395 25468 HC_gene_2920_tx_7 4 + 24395 25468 . 1 1074 0 -chrVII 24395 25584 HC_gene_2920_tx_8 73 + 24395 25584 . 1 1190 0 -chrVII 24464 25584 HC_gene_2920_tx_9 16 + 24464 25584 . 1 1121 0 -chrVII 24620 25468 HC_gene_2920_tx_10 16 + 24620 25468 . 1 849 0 -chrVII 24620 25584 HC_gene_2920_tx_11 326 + 24620 25584 . 1 965 0 -chrVII 24764 25468 HC_gene_2920_tx_12 4 + 24764 25468 . 1 705 0 -chrVII 24764 25584 HC_gene_2920_tx_13 65 + 24764 25584 . 1 821 0 -chrVII 24866 25468 HC_gene_2920_tx_14 9 + 24866 25468 . 1 603 0 -chrVII 24866 25584 HC_gene_2920_tx_15 211 + 24866 25584 . 1 719 0 -chrVII 24988 25468 HC_gene_2920_tx_16 2 + 24988 25468 . 1 481 0 -chrVII 24988 25584 HC_gene_2920_tx_17 61 + 24988 25584 . 1 597 0 -chrVII 25082 25468 HC_gene_2920_tx_18 6 + 25082 25468 . 1 387 0 -chrVII 25082 25584 HC_gene_2920_tx_19 236 + 25082 25584 . 1 503 0 -chrVII 25186 25468 HC_gene_2920_tx_20 3 + 25186 25468 . 1 283 0 -chrVII 25186 25584 HC_gene_2920_tx_21 182 + 25186 25584 . 1 399 0 -chrVII 25459 27523 MC_gene_3365_tx_1 1 - 25459 27523 . 1 2065 0 -chrVII 25496 26575 MC_gene_3365_tx_3 1 - 25496 26575 . 1 1080 0 -chrVII 25501 26269 MC_gene_3365_tx_4 1 - 25501 26269 . 1 769 0 -chrVII 25501 27332 MC_gene_3365_tx_2 1 - 25501 27332 . 1 1832 0 -chrVII 25515 26053 MC_gene_3365_tx_5 1 - 25515 26053 . 1 539 0 -chrVII 25566 26154 MC_gene_3365_tx_6 1 - 25566 26154 . 2 350,189 0,400 -chrVII 25576 27024 MC_gene_3365_tx_7 1 - 25576 27024 . 1 1449 0 -chrVII 25625 26476 MC_gene_3365_tx_8 1 - 25625 26476 . 1 852 0 -chrVII 27663 30239 HC_gene_3366_tx_1 6 - 27663 30239 . 1 2577 0 -chrVII 27764 28525 MC_gene_2921_tx_1 1 + 27764 28525 . 1 762 0 -chrVII 30389 31070 MC_gene_2922_tx_1 1 + 30389 31070 . 1 682 0 -chrVII 30505 30968 MC_gene_2922_tx_2 1 + 30505 30968 . 1 464 0 -chrVII 31817 32861 HC_gene_3367_tx_1 1 - 31817 32861 . 1 1045 0 -chrVII 31905 32844 HC_gene_2923_tx_1 32 + 31905 32844 . 1 940 0 -chrVII 32947 34694 LC_gene_2924_tx_1 1 + 32947 34694 . 1 1748 0 -chrVII 33066 35108 HC_gene_3368_tx_1 2 - 33066 35108 . 1 2043 0 -chrVII 33956 35108 HC_gene_3368_tx_2 3 - 33956 35108 . 1 1153 0 -chrVII 34674 35108 HC_gene_3368_tx_3 1 - 34674 35108 . 1 435 0 -chrVII 35314 35979 LC_gene_3369_tx_1 1 - 35314 35979 . 1 666 0 -chrVII 35588 36672 HC_gene_2925_tx_1 5 + 35588 36672 . 1 1085 0 -chrVII 35588 36762 HC_gene_2925_tx_2 1 + 35588 36762 . 1 1175 0 -chrVII 35588 36815 HC_gene_2925_tx_3 2 + 35588 36815 . 1 1228 0 -chrVII 35588 36818 HC_gene_2925_tx_4 3 + 35588 36818 . 1 1231 0 -chrVII 35588 36820 HC_gene_2925_tx_5 1 + 35588 36820 . 1 1233 0 -chrVII 35588 36821 HC_gene_2925_tx_6 4 + 35588 36821 . 1 1234 0 -chrVII 35588 36823 HC_gene_2925_tx_7 2 + 35588 36823 . 1 1236 0 -chrVII 35588 36825 HC_gene_2925_tx_8 2 + 35588 36825 . 1 1238 0 -chrVII 35588 36826 HC_gene_2925_tx_9 1 + 35588 36826 . 1 1239 0 -chrVII 35588 36829 HC_gene_2925_tx_10 3 + 35588 36829 . 1 1242 0 -chrVII 35588 36833 HC_gene_2925_tx_11 3 + 35588 36833 . 1 1246 0 -chrVII 35588 36834 HC_gene_2925_tx_12 2 + 35588 36834 . 1 1247 0 -chrVII 35588 36836 HC_gene_2925_tx_13 1 + 35588 36836 . 1 1249 0 -chrVII 35588 36850 HC_gene_2925_tx_14 1 + 35588 36850 . 1 1263 0 -chrVII 35588 36851 HC_gene_2925_tx_15 1 + 35588 36851 . 1 1264 0 -chrVII 35588 36855 HC_gene_2925_tx_16 1 + 35588 36855 . 1 1268 0 -chrVII 36001 36672 HC_gene_2925_tx_17 1 + 36001 36672 . 1 672 0 -chrVII 36001 36821 HC_gene_2925_tx_18 1 + 36001 36821 . 1 821 0 -chrVII 36001 36822 HC_gene_2925_tx_19 1 + 36001 36822 . 1 822 0 -chrVII 36266 36672 HC_gene_2925_tx_20 1 + 36266 36672 . 1 407 0 -chrVII 36266 36818 HC_gene_2925_tx_21 1 + 36266 36818 . 1 553 0 -chrVII 36266 36820 HC_gene_2925_tx_22 1 + 36266 36820 . 1 555 0 -chrVII 36266 36821 HC_gene_2925_tx_23 1 + 36266 36821 . 1 556 0 -chrVII 36266 36823 HC_gene_2925_tx_24 1 + 36266 36823 . 1 558 0 -chrVII 36266 36825 HC_gene_2925_tx_25 1 + 36266 36825 . 1 560 0 -chrVII 36266 36829 HC_gene_2925_tx_26 2 + 36266 36829 . 1 564 0 -chrVII 36266 36833 HC_gene_2925_tx_27 1 + 36266 36833 . 1 568 0 -chrVII 36266 36856 HC_gene_2925_tx_28 1 + 36266 36856 . 1 591 0 -chrVII 36288 36678 LC_gene_3370_tx_1 1 - 36288 36678 . 1 391 0 -chrVII 36942 37680 HC_gene_2926_tx_1 65 + 36942 37680 . 1 739 0 -chrVII 37017 37680 HC_gene_2926_tx_2 6 + 37017 37680 . 1 664 0 -chrVII 37160 37680 HC_gene_2926_tx_3 7 + 37160 37680 . 1 521 0 -chrVII 37496 38821 HC_gene_3371_tx_1 65 - 37496 38821 . 1 1326 0 -chrVII 39007 41211 HC_gene_2927_tx_1 159 + 39007 41211 . 1 2205 0 -chrVII 39007 41211 HC_gene_2927_tx_2 1 + 39007 41211 . 2 1134,922 0,1283 -chrVII 39007 41211 HC_gene_2927_tx_3 1 + 39007 41211 . 2 1111,943 0,1262 -chrVII 39007 41211 HC_gene_2927_tx_4 1 + 39007 41211 . 2 1157,958 0,1247 -chrVII 39007 41211 HC_gene_2927_tx_5 1 + 39007 41211 . 2 1131,933 0,1272 -chrVII 39007 41211 HC_gene_2927_tx_6 1 + 39007 41211 . 2 287,1567 0,638 -chrVII 39007 41211 HC_gene_2927_tx_7 1 + 39007 41211 . 2 1180,975 0,1230 -chrVII 39007 41211 HC_gene_2927_tx_8 1 + 39007 41211 . 2 1466,683 0,1522 -chrVII 39007 41211 HC_gene_2927_tx_9 1 + 39007 41211 . 2 1187,943 0,1262 -chrVII 39007 41211 HC_gene_2927_tx_10 1 + 39007 41211 . 2 1081,943 0,1262 -chrVII 39007 41211 HC_gene_2927_tx_11 1 + 39007 41211 . 2 1506,653 0,1552 -chrVII 39007 41211 HC_gene_2927_tx_12 1 + 39007 41211 . 2 1132,987 0,1218 -chrVII 39007 41211 HC_gene_2927_tx_13 1 + 39007 41211 . 2 1187,909 0,1296 -chrVII 39007 41211 HC_gene_2927_tx_14 1 + 39007 41211 . 2 1119,1009 0,1196 -chrVII 39007 41211 HC_gene_2927_tx_15 1 + 39007 41211 . 2 1016,1139 0,1066 -chrVII 39007 41398 HC_gene_2927_tx_16 1 + 39007 41398 . 1 2392 0 -chrVII 39016 41211 HC_gene_2927_tx_17 1 + 39016 41211 . 2 1205,940 0,1256 -chrVII 39256 41211 HC_gene_2927_tx_18 13 + 39256 41211 . 1 1956 0 -chrVII 39256 41211 HC_gene_2927_tx_19 1 + 39256 41211 . 2 1794,108 0,1848 -chrVII 39362 41211 HC_gene_2927_tx_20 39 + 39362 41211 . 1 1850 0 -chrVII 39362 41211 HC_gene_2927_tx_21 1 + 39362 41211 . 2 935,863 0,987 -chrVII 39621 41211 HC_gene_2927_tx_22 1 + 39621 41211 . 2 863,651 0,940 -chrVII 39621 41211 HC_gene_2927_tx_23 21 + 39621 41211 . 1 1591 0 -chrVII 39722 41211 HC_gene_2927_tx_24 18 + 39722 41211 . 1 1490 0 -chrVII 39822 41211 HC_gene_2927_tx_25 26 + 39822 41211 . 1 1390 0 -chrVII 39894 41211 HC_gene_2927_tx_26 22 + 39894 41211 . 1 1318 0 -chrVII 39951 41211 HC_gene_2927_tx_27 11 + 39951 41211 . 1 1261 0 -chrVII 39951 41398 HC_gene_2927_tx_28 1 + 39951 41398 . 1 1448 0 -chrVII 40203 41211 HC_gene_2927_tx_29 28 + 40203 41211 . 1 1009 0 -chrVII 40429 41211 HC_gene_2927_tx_30 67 + 40429 41211 . 1 783 0 -chrVII 40429 41398 HC_gene_2927_tx_31 1 + 40429 41398 . 1 970 0 -chrVII 40517 41211 HC_gene_2927_tx_32 40 + 40517 41211 . 1 695 0 -chrVII 40662 41211 HC_gene_2927_tx_33 50 + 40662 41211 . 1 550 0 -chrVII 40757 41211 HC_gene_2927_tx_34 69 + 40757 41211 . 1 455 0 -chrVII 41441 43263 HC_gene_2928_tx_1 68 + 41441 43263 . 1 1823 0 -chrVII 41441 43263 HC_gene_2928_tx_2 1 + 41441 43263 . 2 898,853 0,970 -chrVII 41441 43263 HC_gene_2928_tx_3 1 + 41441 43263 . 2 898,780 0,1043 -chrVII 41441 43263 HC_gene_2928_tx_4 1 + 41441 43263 . 2 685,1075 0,748 -chrVII 41441 43263 HC_gene_2928_tx_5 1 + 41441 43263 . 2 882,843 0,980 -chrVII 41441 43263 HC_gene_2928_tx_6 1 + 41441 43263 . 2 842,836 0,987 -chrVII 41664 43263 HC_gene_2928_tx_7 12 + 41664 43263 . 1 1600 0 -chrVII 41664 43263 HC_gene_2928_tx_8 1 + 41664 43263 . 2 857,645 0,955 -chrVII 41766 43263 HC_gene_2928_tx_9 5 + 41766 43263 . 1 1498 0 -chrVII 41857 43263 HC_gene_2928_tx_10 1 + 41857 43263 . 2 426,662 0,745 -chrVII 41857 43263 HC_gene_2928_tx_11 11 + 41857 43263 . 1 1407 0 -chrVII 41968 43263 HC_gene_2928_tx_12 13 + 41968 43263 . 1 1296 0 -chrVII 42022 43263 HC_gene_2928_tx_13 2 + 42022 43263 . 1 1242 0 -chrVII 42736 43263 HC_gene_2928_tx_14 13 + 42736 43263 . 1 528 0 -chrVII 42854 43263 HC_gene_2928_tx_15 22 + 42854 43263 . 1 410 0 -chrVII 43156 44350 LC_gene_3372_tx_1 1 - 43156 44350 . 1 1195 0 -chrVII 43332 44614 HC_gene_2929_tx_1 31 + 43332 44614 . 1 1283 0 -chrVII 43332 44614 HC_gene_2929_tx_2 1 + 43332 44614 . 2 76,1124 0,159 -chrVII 43586 44614 HC_gene_2929_tx_3 8 + 43586 44614 . 1 1029 0 -chrVII 44442 44840 HC_gene_3373_tx_1 13 - 44442 44840 . 1 399 0 -chrVII 44442 44978 HC_gene_3373_tx_3 9 - 44442 44978 . 1 537 0 -chrVII 44442 45049 HC_gene_3373_tx_4 8 - 44442 45049 . 1 608 0 -chrVII 44442 45237 HC_gene_3373_tx_7 64 - 44442 45237 . 1 796 0 -chrVII 44497 44840 HC_gene_3373_tx_2 11 - 44497 44840 . 1 344 0 -chrVII 44497 44978 HC_gene_3373_tx_5 24 - 44497 44978 . 1 482 0 -chrVII 44497 45049 HC_gene_3373_tx_6 12 - 44497 45049 . 1 553 0 -chrVII 44497 45237 HC_gene_3373_tx_8 113 - 44497 45237 . 1 741 0 -chrVII 45412 48487 HC_gene_2930_tx_1 8 + 45412 48487 . 1 3076 0 -chrVII 45412 48487 HC_gene_2930_tx_2 1 + 45412 48487 . 2 1045,1941 0,1135 -chrVII 48483 49314 HC_gene_3374_tx_1 4 - 48483 49314 . 1 832 0 -chrVII 49549 50213 HC_gene_2931_tx_1 2 + 49549 50213 . 1 665 0 -chrVII 49549 50218 HC_gene_2931_tx_2 1 + 49549 50218 . 1 670 0 -chrVII 50233 50627 LC_gene_3375_tx_1 1 - 50233 50627 . 1 395 0 -chrVII 50768 52480 HC_gene_2932_tx_1 5 + 50768 52480 . 1 1713 0 -chrVII 50859 52480 HC_gene_2932_tx_2 5 + 50859 52480 . 1 1622 0 -chrVII 52408 53605 HC_gene_3376_tx_1 3 - 52408 53605 . 1 1198 0 -chrVII 52532 53292 HC_gene_3376_tx_5 4 - 52532 53292 . 1 761 0 -chrVII 52532 53365 HC_gene_3376_tx_6 3 - 52532 53365 . 1 834 0 -chrVII 52532 53605 HC_gene_3376_tx_2 16 - 52532 53605 . 1 1074 0 -chrVII 52532 53605 HC_gene_3376_tx_3 1 - 52532 53605 . 2 456,540 0,534 -chrVII 52600 53365 HC_gene_3376_tx_7 4 - 52600 53365 . 1 766 0 -chrVII 52600 53605 HC_gene_3376_tx_4 20 - 52600 53605 . 1 1006 0 -chrVII 53390 53789 MC_gene_2933_tx_1 1 + 53390 53789 . 1 400 0 -chrVII 53715 55810 HC_gene_3377_tx_1 9 - 53715 55810 . 1 2096 0 -chrVII 56463 58994 HC_gene_2934_tx_1 119 + 56463 58994 . 1 2532 0 -chrVII 56590 58994 HC_gene_2934_tx_2 8 + 56590 58994 . 1 2405 0 -chrVII 56954 58994 HC_gene_2934_tx_3 14 + 56954 58994 . 1 2041 0 -chrVII 57109 58994 HC_gene_2934_tx_4 7 + 57109 58994 . 1 1886 0 -chrVII 57196 58994 HC_gene_2934_tx_5 17 + 57196 58994 . 1 1799 0 -chrVII 57284 58994 HC_gene_2934_tx_6 43 + 57284 58994 . 1 1711 0 -chrVII 57544 58994 HC_gene_2934_tx_7 31 + 57544 58994 . 1 1451 0 -chrVII 57673 58994 HC_gene_2934_tx_8 13 + 57673 58994 . 1 1322 0 -chrVII 57949 58994 HC_gene_2934_tx_9 30 + 57949 58994 . 1 1046 0 -chrVII 58120 58994 HC_gene_2934_tx_10 25 + 58120 58994 . 1 875 0 -chrVII 58241 58994 HC_gene_2934_tx_11 21 + 58241 58994 . 1 754 0 -chrVII 58373 58994 HC_gene_2934_tx_12 13 + 58373 58994 . 1 622 0 -chrVII 58487 58994 HC_gene_2934_tx_13 81 + 58487 58994 . 1 508 0 -chrVII 59092 61920 HC_gene_2935_tx_1 9 + 59092 61920 . 1 2829 0 -chrVII 61349 61920 HC_gene_2935_tx_2 17 + 61349 61920 . 1 572 0 -chrVII 61349 61920 HC_gene_2935_tx_3 1 + 61349 61920 . 2 231,275 0,297 -chrVII 61570 62224 LC_gene_3378_tx_1 1 - 61570 62224 . 1 655 0 -chrVII 62052 63075 HC_gene_2936_tx_1 17 + 62052 63075 . 1 1024 0 -chrVII 62052 63075 HC_gene_2936_tx_2 80 + 62052 63075 . 2 80,886 0,138 -chrVII 62263 63075 HC_gene_2936_tx_3 30 + 62263 63075 . 1 813 0 -chrVII 62321 63075 HC_gene_2936_tx_4 2 + 62321 63075 . 1 755 0 -chrVII 62448 63075 HC_gene_2936_tx_5 30 + 62448 63075 . 1 628 0 -chrVII 62975 63641 HC_gene_3379_tx_1 286 - 62975 63641 . 1 667 0 -chrVII 62975 63641 HC_gene_3379_tx_2 1 - 62975 63641 . 2 30,517 0,150 -chrVII 62975 63641 HC_gene_3379_tx_3 1 - 62975 63641 . 2 300,293 0,374 -chrVII 62975 63641 HC_gene_3379_tx_4 1 - 62975 63641 . 2 124,268 0,399 -chrVII 63763 64324 HC_gene_2937_tx_1 5 + 63763 64324 . 1 562 0 -chrVII 64239 67189 HC_gene_3380_tx_1 1 - 64239 67189 . 1 2951 0 -chrVII 64338 67189 HC_gene_3380_tx_2 2 - 64338 67189 . 1 2852 0 -chrVII 64428 67189 HC_gene_3380_tx_3 3 - 64428 67189 . 1 2762 0 -chrVII 67551 69496 HC_gene_2938_tx_1 39 + 67551 69496 . 1 1946 0 -chrVII 67551 69496 HC_gene_2938_tx_2 1 + 67551 69496 . 2 1798,110 0,1836 -chrVII 67551 69496 HC_gene_2938_tx_3 1 + 67551 69496 . 2 1003,853 0,1093 -chrVII 67551 69496 HC_gene_2938_tx_4 1 + 67551 69496 . 2 1732,120 0,1826 -chrVII 67804 69496 HC_gene_2938_tx_5 7 + 67804 69496 . 1 1693 0 -chrVII 67922 69496 HC_gene_2938_tx_6 3 + 67922 69496 . 1 1575 0 -chrVII 67922 69496 HC_gene_2938_tx_7 1 + 67922 69496 . 2 94,1349 0,226 -chrVII 67922 69496 HC_gene_2938_tx_8 1 + 67922 69496 . 2 1307,187 0,1388 -chrVII 68042 69397 LC_gene_3381_tx_1 1 - 68042 69397 . 1 1356 0 -chrVII 68634 69496 HC_gene_2938_tx_9 5 + 68634 69496 . 1 863 0 -chrVII 68862 69496 HC_gene_2938_tx_10 11 + 68862 69496 . 1 635 0 -chrVII 69240 69496 HC_gene_2938_tx_11 1 + 69240 69496 . 1 257 0 -chrVII 69643 72738 HC_gene_2939_tx_1 4 + 69643 72738 . 1 3096 0 -chrVII 69643 72738 HC_gene_2939_tx_2 1 + 69643 72738 . 2 1628,1401 0,1695 -chrVII 69643 72738 HC_gene_2939_tx_3 1 + 69643 72738 . 2 671,2135 0,961 -chrVII 70126 72738 HC_gene_2939_tx_4 1 + 70126 72738 . 1 2613 0 -chrVII 71295 72738 HC_gene_2939_tx_5 1 + 71295 72738 . 1 1444 0 -chrVII 72171 73193 HC_gene_3382_tx_1 1 - 72171 73193 . 2 818,56 0,967 -chrVII 72294 73193 HC_gene_3382_tx_2 31 - 72294 73193 . 2 695,56 0,844 -chrVII 72294 73193 HC_gene_3382_tx_3 1 - 72294 73193 . 3 219,324,56 0,367,844 -chrVII 72294 73193 HC_gene_3382_tx_4 1 - 72294 73193 . 1 900 0 -chrVII 72294 73193 HC_gene_3382_tx_5 1 - 72294 73193 . 2 732,67 0,833 -chrVII 72294 73193 HC_gene_3382_tx_6 1 - 72294 73193 . 2 691,56 0,844 -chrVII 72294 73193 HC_gene_3382_tx_7 1 - 72294 73193 . 2 689,56 0,844 -chrVII 72583 73193 HC_gene_3382_tx_8 2 - 72583 73193 . 2 406,56 0,555 -chrVII 72584 73193 HC_gene_3382_tx_9 1 - 72584 73193 . 1 610 0 -chrVII 72593 73193 HC_gene_3382_tx_10 1 - 72593 73193 . 2 396,56 0,545 -chrVII 72594 73193 HC_gene_3382_tx_11 2 - 72594 73193 . 2 395,56 0,544 -chrVII 72595 73193 HC_gene_3382_tx_12 5 - 72595 73193 . 2 394,56 0,543 -chrVII 72595 73193 HC_gene_3382_tx_13 1 - 72595 73193 . 1 599 0 -chrVII 72596 73193 HC_gene_3382_tx_14 2 - 72596 73193 . 2 393,56 0,542 -chrVII 72598 73193 HC_gene_3382_tx_15 1 - 72598 73193 . 2 391,56 0,540 -chrVII 72599 73193 HC_gene_3382_tx_16 1 - 72599 73193 . 2 390,56 0,539 -chrVII 72600 73193 HC_gene_3382_tx_17 9 - 72600 73193 . 2 389,56 0,538 -chrVII 72600 73193 HC_gene_3382_tx_18 1 - 72600 73193 . 1 594 0 -chrVII 72600 73193 HC_gene_3382_tx_19 1 - 72600 73193 . 2 385,56 0,538 -chrVII 72605 73193 HC_gene_3382_tx_20 2 - 72605 73193 . 2 384,56 0,533 -chrVII 72606 73193 HC_gene_3382_tx_21 9 - 72606 73193 . 2 383,56 0,532 -chrVII 72606 73193 HC_gene_3382_tx_22 1 - 72606 73193 . 2 379,56 0,532 -chrVII 72608 73193 HC_gene_3382_tx_23 10 - 72608 73193 . 2 381,56 0,530 -chrVII 72609 73193 HC_gene_3382_tx_24 1 - 72609 73193 . 2 380,56 0,529 -chrVII 72610 73193 HC_gene_3382_tx_25 18 - 72610 73193 . 2 379,56 0,528 -chrVII 72610 73193 HC_gene_3382_tx_26 1 - 72610 73193 . 2 375,56 0,528 -chrVII 72610 73193 HC_gene_3382_tx_27 1 - 72610 73193 . 1 584 0 -chrVII 72611 73193 HC_gene_3382_tx_28 1 - 72611 73193 . 2 378,60 0,523 -chrVII 72613 73193 HC_gene_3382_tx_29 15 - 72613 73193 . 2 376,56 0,525 -chrVII 72614 73193 HC_gene_3382_tx_30 2 - 72614 73193 . 2 375,56 0,524 -chrVII 72614 73193 HC_gene_3382_tx_31 1 - 72614 73193 . 2 371,56 0,524 -chrVII 72615 73193 HC_gene_3382_tx_32 2 - 72615 73193 . 2 374,56 0,523 -chrVII 72616 73193 HC_gene_3382_tx_33 10 - 72616 73193 . 2 373,56 0,522 -chrVII 72616 73193 HC_gene_3382_tx_34 1 - 72616 73193 . 2 369,56 0,522 -chrVII 72617 73193 HC_gene_3382_tx_35 1 - 72617 73193 . 2 368,56 0,521 -chrVII 72617 73193 HC_gene_3382_tx_36 1 - 72617 73193 . 2 372,56 0,521 -chrVII 72619 73193 HC_gene_3382_tx_37 1 - 72619 73193 . 1 575 0 -chrVII 72619 73193 HC_gene_3382_tx_38 1 - 72619 73193 . 2 370,56 0,519 -chrVII 72620 73193 HC_gene_3382_tx_39 2 - 72620 73193 . 2 369,56 0,518 -chrVII 72620 73193 HC_gene_3382_tx_40 1 - 72620 73193 . 2 365,56 0,518 -chrVII 72621 73193 HC_gene_3382_tx_41 5 - 72621 73193 . 2 368,56 0,517 -chrVII 72622 73193 HC_gene_3382_tx_42 2 - 72622 73193 . 2 363,56 0,516 -chrVII 72622 73193 HC_gene_3382_tx_43 1 - 72622 73193 . 2 367,56 0,516 -chrVII 72624 73193 HC_gene_3382_tx_44 2 - 72624 73193 . 2 365,56 0,514 -chrVII 72629 73193 HC_gene_3382_tx_45 2 - 72629 73193 . 2 360,56 0,509 -chrVII 72630 73193 HC_gene_3382_tx_46 3 - 72630 73193 . 2 359,56 0,508 -chrVII 72631 73193 HC_gene_3382_tx_47 2 - 72631 73193 . 2 358,56 0,507 -chrVII 72634 73193 HC_gene_3382_tx_48 3 - 72634 73193 . 2 355,56 0,504 -chrVII 72636 73193 HC_gene_3382_tx_49 1 - 72636 73193 . 2 353,56 0,502 -chrVII 72637 73193 HC_gene_3382_tx_50 2 - 72637 73193 . 2 352,56 0,501 -chrVII 72637 73193 HC_gene_3382_tx_51 1 - 72637 73193 . 2 348,56 0,501 -chrVII 72637 73193 HC_gene_3382_tx_52 1 - 72637 73193 . 2 306,56 0,501 -chrVII 72639 73193 HC_gene_3382_tx_53 2 - 72639 73193 . 2 350,56 0,499 -chrVII 72644 73193 HC_gene_3382_tx_54 1 - 72644 73193 . 2 345,56 0,494 -chrVII 72646 73193 HC_gene_3382_tx_55 1 - 72646 73193 . 2 343,56 0,492 -chrVII 72647 73193 HC_gene_3382_tx_56 2 - 72647 73193 . 2 342,56 0,491 -chrVII 72648 73193 HC_gene_3382_tx_57 2 - 72648 73193 . 2 341,56 0,490 -chrVII 72649 73193 HC_gene_3382_tx_58 1 - 72649 73193 . 2 336,56 0,489 -chrVII 72649 73193 HC_gene_3382_tx_59 2 - 72649 73193 . 2 340,56 0,489 -chrVII 73334 73775 HC_gene_2940_tx_1 51 + 73334 73775 . 1 442 0 -chrVII 73713 74242 HC_gene_3383_tx_1 5 - 73713 74242 . 1 530 0 -chrVII 73968 74242 HC_gene_3383_tx_2 4 - 73968 74242 . 1 275 0 -chrVII 74023 74242 HC_gene_3383_tx_3 1 - 74023 74242 . 1 220 0 -chrVII 74263 74752 HC_gene_3384_tx_1 1 - 74263 74752 . 1 490 0 -chrVII 74550 76560 HC_gene_2941_tx_1 1 + 74550 76560 . 1 2011 0 -chrVII 74690 76547 HC_gene_2941_tx_2 1 + 74690 76547 . 1 1858 0 -chrVII 74690 76604 HC_gene_2941_tx_3 1 + 74690 76604 . 1 1915 0 -chrVII 74913 76503 HC_gene_2941_tx_4 1 + 74913 76503 . 1 1591 0 -chrVII 74913 76560 HC_gene_2941_tx_5 1 + 74913 76560 . 1 1648 0 -chrVII 74913 76608 HC_gene_2941_tx_6 1 + 74913 76608 . 1 1696 0 -chrVII 74913 76609 HC_gene_2941_tx_7 1 + 74913 76609 . 1 1697 0 -chrVII 76787 78034 HC_gene_2942_tx_1 1 + 76787 78034 . 1 1248 0 -chrVII 76806 78034 HC_gene_2942_tx_2 1 + 76806 78034 . 1 1229 0 -chrVII 76809 78028 HC_gene_2942_tx_3 1 + 76809 78028 . 1 1220 0 -chrVII 76845 78026 HC_gene_2942_tx_4 1 + 76845 78026 . 1 1182 0 -chrVII 76852 78008 HC_gene_2942_tx_5 10 + 76852 78008 . 1 1157 0 -chrVII 76852 78009 HC_gene_2942_tx_6 18 + 76852 78009 . 1 1158 0 -chrVII 76852 78010 HC_gene_2942_tx_7 8 + 76852 78010 . 1 1159 0 -chrVII 76852 78011 HC_gene_2942_tx_8 15 + 76852 78011 . 1 1160 0 -chrVII 76852 78013 HC_gene_2942_tx_9 8 + 76852 78013 . 1 1162 0 -chrVII 76852 78014 HC_gene_2942_tx_10 11 + 76852 78014 . 1 1163 0 -chrVII 76852 78015 HC_gene_2942_tx_11 7 + 76852 78015 . 1 1164 0 -chrVII 76852 78017 HC_gene_2942_tx_12 34 + 76852 78017 . 1 1166 0 -chrVII 76852 78018 HC_gene_2942_tx_13 2 + 76852 78018 . 1 1167 0 -chrVII 76852 78019 HC_gene_2942_tx_14 4 + 76852 78019 . 1 1168 0 -chrVII 76852 78020 HC_gene_2942_tx_15 29 + 76852 78020 . 1 1169 0 -chrVII 76852 78020 HC_gene_2942_tx_16 1 + 76852 78020 . 2 856,274 0,895 -chrVII 76852 78021 HC_gene_2942_tx_17 1 + 76852 78021 . 1 1170 0 -chrVII 76852 78024 HC_gene_2942_tx_18 1 + 76852 78024 . 1 1173 0 -chrVII 76852 78025 HC_gene_2942_tx_19 3 + 76852 78025 . 1 1174 0 -chrVII 76852 78052 HC_gene_2942_tx_20 1 + 76852 78052 . 1 1201 0 -chrVII 76852 78056 HC_gene_2942_tx_21 1 + 76852 78056 . 1 1205 0 -chrVII 76852 78060 HC_gene_2942_tx_22 1 + 76852 78060 . 1 1209 0 -chrVII 76852 78064 HC_gene_2942_tx_23 1 + 76852 78064 . 1 1213 0 -chrVII 76852 78067 HC_gene_2942_tx_24 1 + 76852 78067 . 1 1216 0 -chrVII 76852 78075 HC_gene_2942_tx_25 1 + 76852 78075 . 1 1224 0 -chrVII 76852 78091 HC_gene_2942_tx_26 3 + 76852 78091 . 1 1240 0 -chrVII 76852 78095 HC_gene_2942_tx_27 1 + 76852 78095 . 1 1244 0 -chrVII 76852 78097 HC_gene_2942_tx_28 1 + 76852 78097 . 1 1246 0 -chrVII 76852 78100 HC_gene_2942_tx_29 1 + 76852 78100 . 1 1249 0 -chrVII 76852 78101 HC_gene_2942_tx_30 1 + 76852 78101 . 1 1250 0 -chrVII 76852 78103 HC_gene_2942_tx_31 1 + 76852 78103 . 1 1252 0 -chrVII 76852 78106 HC_gene_2942_tx_32 1 + 76852 78106 . 1 1255 0 -chrVII 76852 78108 HC_gene_2942_tx_33 1 + 76852 78108 . 1 1257 0 -chrVII 76852 78111 HC_gene_2942_tx_34 1 + 76852 78111 . 1 1260 0 -chrVII 76852 78112 HC_gene_2942_tx_35 2 + 76852 78112 . 1 1261 0 -chrVII 76852 78114 HC_gene_2942_tx_36 2 + 76852 78114 . 1 1263 0 -chrVII 76852 78115 HC_gene_2942_tx_37 1 + 76852 78115 . 1 1264 0 -chrVII 76852 78122 HC_gene_2942_tx_38 1 + 76852 78122 . 1 1271 0 -chrVII 76852 78125 HC_gene_2942_tx_39 2 + 76852 78125 . 1 1274 0 -chrVII 76852 78127 HC_gene_2942_tx_40 1 + 76852 78127 . 1 1276 0 -chrVII 76852 78130 HC_gene_2942_tx_41 1 + 76852 78130 . 1 1279 0 -chrVII 76852 78132 HC_gene_2942_tx_42 1 + 76852 78132 . 1 1281 0 -chrVII 76852 78141 HC_gene_2942_tx_43 1 + 76852 78141 . 1 1290 0 -chrVII 76852 78143 HC_gene_2942_tx_44 4 + 76852 78143 . 1 1292 0 -chrVII 76852 78148 HC_gene_2942_tx_45 1 + 76852 78148 . 1 1297 0 -chrVII 76852 78153 HC_gene_2942_tx_46 1 + 76852 78153 . 1 1302 0 -chrVII 76852 78155 HC_gene_2942_tx_47 1 + 76852 78155 . 2 874,240 0,1064 -chrVII 76852 78181 HC_gene_2942_tx_48 1 + 76852 78181 . 1 1330 0 -chrVII 76852 78190 HC_gene_2942_tx_49 1 + 76852 78190 . 1 1339 0 -chrVII 76852 78193 HC_gene_2942_tx_50 1 + 76852 78193 . 1 1342 0 -chrVII 76852 78196 HC_gene_2942_tx_51 1 + 76852 78196 . 1 1345 0 -chrVII 76852 78201 HC_gene_2942_tx_52 1 + 76852 78201 . 1 1350 0 -chrVII 76852 78209 HC_gene_2942_tx_53 3 + 76852 78209 . 1 1358 0 -chrVII 76857 78034 HC_gene_2942_tx_54 1 + 76857 78034 . 1 1178 0 -chrVII 76923 78034 HC_gene_2942_tx_55 1 + 76923 78034 . 1 1112 0 -chrVII 76936 78008 HC_gene_2942_tx_56 1 + 76936 78008 . 1 1073 0 -chrVII 76936 78009 HC_gene_2942_tx_57 1 + 76936 78009 . 1 1074 0 -chrVII 76936 78011 HC_gene_2942_tx_58 2 + 76936 78011 . 1 1076 0 -chrVII 76936 78014 HC_gene_2942_tx_59 2 + 76936 78014 . 1 1079 0 -chrVII 76936 78015 HC_gene_2942_tx_60 1 + 76936 78015 . 1 1080 0 -chrVII 76936 78017 HC_gene_2942_tx_61 3 + 76936 78017 . 1 1082 0 -chrVII 76936 78019 HC_gene_2942_tx_62 1 + 76936 78019 . 1 1084 0 -chrVII 76936 78020 HC_gene_2942_tx_63 2 + 76936 78020 . 1 1085 0 -chrVII 76936 78021 HC_gene_2942_tx_64 1 + 76936 78021 . 1 1086 0 -chrVII 76936 78024 HC_gene_2942_tx_65 1 + 76936 78024 . 1 1089 0 -chrVII 76936 78026 HC_gene_2942_tx_66 1 + 76936 78026 . 2 319,695 0,396 -chrVII 76936 78101 HC_gene_2942_tx_67 2 + 76936 78101 . 1 1166 0 -chrVII 76936 78141 HC_gene_2942_tx_68 1 + 76936 78141 . 1 1206 0 -chrVII 76936 78149 HC_gene_2942_tx_69 1 + 76936 78149 . 1 1214 0 -chrVII 76943 78034 HC_gene_2942_tx_70 1 + 76943 78034 . 1 1092 0 -chrVII 77111 78009 HC_gene_2942_tx_71 3 + 77111 78009 . 1 899 0 -chrVII 77111 78010 HC_gene_2942_tx_72 4 + 77111 78010 . 1 900 0 -chrVII 77111 78011 HC_gene_2942_tx_73 4 + 77111 78011 . 1 901 0 -chrVII 77111 78013 HC_gene_2942_tx_74 1 + 77111 78013 . 1 903 0 -chrVII 77111 78014 HC_gene_2942_tx_75 2 + 77111 78014 . 1 904 0 -chrVII 77111 78017 HC_gene_2942_tx_76 5 + 77111 78017 . 1 907 0 -chrVII 77111 78020 HC_gene_2942_tx_77 6 + 77111 78020 . 1 910 0 -chrVII 77111 78021 HC_gene_2942_tx_78 1 + 77111 78021 . 1 911 0 -chrVII 77111 78022 HC_gene_2942_tx_79 1 + 77111 78022 . 1 912 0 -chrVII 77111 78068 HC_gene_2942_tx_80 1 + 77111 78068 . 1 958 0 -chrVII 77111 78089 HC_gene_2942_tx_81 1 + 77111 78089 . 1 979 0 -chrVII 77111 78125 HC_gene_2942_tx_82 1 + 77111 78125 . 1 1015 0 -chrVII 77111 78143 HC_gene_2942_tx_83 3 + 77111 78143 . 1 1033 0 -chrVII 77111 78165 HC_gene_2942_tx_84 1 + 77111 78165 . 1 1055 0 -chrVII 77111 78196 HC_gene_2942_tx_85 1 + 77111 78196 . 1 1086 0 -chrVII 77111 79065 HC_gene_2942_tx_112 1 + 77111 79065 . 1 1955 0 -chrVII 77206 78008 HC_gene_2942_tx_86 1 + 77206 78008 . 1 803 0 -chrVII 77206 78009 HC_gene_2942_tx_87 2 + 77206 78009 . 1 804 0 -chrVII 77206 78010 HC_gene_2942_tx_88 1 + 77206 78010 . 1 805 0 -chrVII 77206 78012 HC_gene_2942_tx_89 1 + 77206 78012 . 1 807 0 -chrVII 77206 78014 HC_gene_2942_tx_90 2 + 77206 78014 . 1 809 0 -chrVII 77206 78020 HC_gene_2942_tx_91 1 + 77206 78020 . 1 815 0 -chrVII 77206 78099 HC_gene_2942_tx_92 1 + 77206 78099 . 1 894 0 -chrVII 77206 78111 HC_gene_2942_tx_93 1 + 77206 78111 . 1 906 0 -chrVII 77206 78115 HC_gene_2942_tx_94 1 + 77206 78115 . 1 910 0 -chrVII 77206 78143 HC_gene_2942_tx_95 1 + 77206 78143 . 1 938 0 -chrVII 77206 78209 HC_gene_2942_tx_96 1 + 77206 78209 . 1 1004 0 -chrVII 77296 78009 HC_gene_2942_tx_97 2 + 77296 78009 . 1 714 0 -chrVII 77296 78011 HC_gene_2942_tx_98 1 + 77296 78011 . 1 716 0 -chrVII 77296 78014 HC_gene_2942_tx_99 1 + 77296 78014 . 1 719 0 -chrVII 77296 78017 HC_gene_2942_tx_100 2 + 77296 78017 . 1 722 0 -chrVII 77296 78020 HC_gene_2942_tx_101 4 + 77296 78020 . 1 725 0 -chrVII 77296 78022 HC_gene_2942_tx_102 1 + 77296 78022 . 1 727 0 -chrVII 77296 78024 HC_gene_2942_tx_103 1 + 77296 78024 . 1 729 0 -chrVII 77296 78094 HC_gene_2942_tx_104 1 + 77296 78094 . 1 799 0 -chrVII 77296 78130 HC_gene_2942_tx_105 1 + 77296 78130 . 1 835 0 -chrVII 77296 78133 HC_gene_2942_tx_106 1 + 77296 78133 . 1 838 0 -chrVII 77296 78143 HC_gene_2942_tx_107 1 + 77296 78143 . 1 848 0 -chrVII 77296 78145 HC_gene_2942_tx_108 1 + 77296 78145 . 1 850 0 -chrVII 77296 78168 HC_gene_2942_tx_109 1 + 77296 78168 . 1 873 0 -chrVII 77296 78184 HC_gene_2942_tx_110 1 + 77296 78184 . 1 889 0 -chrVII 77296 78190 HC_gene_2942_tx_111 1 + 77296 78190 . 1 895 0 -chrVII 77296 79065 HC_gene_2942_tx_113 1 + 77296 79065 . 1 1770 0 -chrVII 77749 78009 HC_gene_2942_tx_114 1 + 77749 78009 . 1 261 0 -chrVII 77749 78010 HC_gene_2942_tx_115 3 + 77749 78010 . 1 262 0 -chrVII 77749 78011 HC_gene_2942_tx_116 3 + 77749 78011 . 1 263 0 -chrVII 77749 78013 HC_gene_2942_tx_117 3 + 77749 78013 . 1 265 0 -chrVII 77749 78014 HC_gene_2942_tx_118 2 + 77749 78014 . 1 266 0 -chrVII 77749 78015 HC_gene_2942_tx_119 1 + 77749 78015 . 1 267 0 -chrVII 77749 78017 HC_gene_2942_tx_120 4 + 77749 78017 . 1 269 0 -chrVII 77749 78020 HC_gene_2942_tx_121 2 + 77749 78020 . 1 272 0 -chrVII 77749 78021 HC_gene_2942_tx_122 1 + 77749 78021 . 1 273 0 -chrVII 77749 78025 HC_gene_2942_tx_123 1 + 77749 78025 . 1 277 0 -chrVII 77749 78057 HC_gene_2942_tx_124 1 + 77749 78057 . 1 309 0 -chrVII 77749 78064 HC_gene_2942_tx_125 1 + 77749 78064 . 1 316 0 -chrVII 77749 78101 HC_gene_2942_tx_126 1 + 77749 78101 . 1 353 0 -chrVII 77749 78103 HC_gene_2942_tx_127 1 + 77749 78103 . 1 355 0 -chrVII 77749 78105 HC_gene_2942_tx_128 1 + 77749 78105 . 1 357 0 -chrVII 77749 78108 HC_gene_2942_tx_129 1 + 77749 78108 . 1 360 0 -chrVII 77749 78120 HC_gene_2942_tx_130 1 + 77749 78120 . 1 372 0 -chrVII 77749 78125 HC_gene_2942_tx_131 1 + 77749 78125 . 1 377 0 -chrVII 77749 78127 HC_gene_2942_tx_132 1 + 77749 78127 . 1 379 0 -chrVII 77749 78134 HC_gene_2942_tx_133 1 + 77749 78134 . 1 386 0 -chrVII 77749 78143 HC_gene_2942_tx_134 2 + 77749 78143 . 1 395 0 -chrVII 77749 78155 HC_gene_2942_tx_135 1 + 77749 78155 . 1 407 0 -chrVII 77749 78170 HC_gene_2942_tx_136 1 + 77749 78170 . 1 422 0 -chrVII 77749 78194 HC_gene_2942_tx_137 1 + 77749 78194 . 1 446 0 -chrVII 77749 78209 HC_gene_2942_tx_138 2 + 77749 78209 . 1 461 0 -chrVII 77905 78647 HC_gene_3385_tx_1 9 - 77905 78647 . 1 743 0 -chrVII 77905 78949 HC_gene_3385_tx_2 55 - 77905 78949 . 1 1045 0 -chrVII 77905 80378 HC_gene_3385_tx_4 1 - 77905 80378 . 3 72,1540,164 0,166,2310 -chrVII 78026 79065 HC_gene_2942_tx_139 1 + 78026 79065 . 1 1040 0 -chrVII 78036 78949 HC_gene_3385_tx_3 2 - 78036 78949 . 1 914 0 -chrVII 78254 79065 HC_gene_2942_tx_140 2 + 78254 79065 . 1 812 0 -chrVII 78760 79065 HC_gene_2942_tx_141 2 + 78760 79065 . 1 306 0 -chrVII 78935 80367 HC_gene_3386_tx_1 1 - 78935 80367 . 1 1433 0 -chrVII 78939 80362 HC_gene_3386_tx_2 1 - 78939 80362 . 1 1424 0 -chrVII 78939 80367 HC_gene_3386_tx_3 1 - 78939 80367 . 1 1429 0 -chrVII 78939 80369 HC_gene_3386_tx_4 1 - 78939 80369 . 1 1431 0 -chrVII 78950 80378 HC_gene_3386_tx_5 1 - 78950 80378 . 1 1429 0 -chrVII 79076 80378 HC_gene_3386_tx_6 1 - 79076 80378 . 1 1303 0 -chrVII 79097 80509 HC_gene_3386_tx_7 1 - 79097 80509 . 1 1413 0 -chrVII 79207 80601 LC_gene_2943_tx_1 1 + 79207 80601 . 1 1395 0 -chrVII 80500 81225 HC_gene_3387_tx_1 1 - 80500 81225 . 1 726 0 -chrVII 80500 81235 HC_gene_3387_tx_2 1 - 80500 81235 . 1 736 0 -chrVII 80508 81229 HC_gene_3387_tx_3 1 - 80508 81229 . 1 722 0 -chrVII 80511 81078 HC_gene_3387_tx_17 4 - 80511 81078 . 1 568 0 -chrVII 80511 81256 HC_gene_3387_tx_4 8 - 80511 81256 . 1 746 0 -chrVII 80512 81256 HC_gene_3387_tx_5 2 - 80512 81256 . 1 745 0 -chrVII 80513 81078 HC_gene_3387_tx_18 1 - 80513 81078 . 1 566 0 -chrVII 80513 81256 HC_gene_3387_tx_6 8 - 80513 81256 . 1 744 0 -chrVII 80514 81256 HC_gene_3387_tx_7 1 - 80514 81256 . 1 743 0 -chrVII 80516 81256 HC_gene_3387_tx_8 1 - 80516 81256 . 1 741 0 -chrVII 80518 81256 HC_gene_3387_tx_9 1 - 80518 81256 . 1 739 0 -chrVII 80519 81256 HC_gene_3387_tx_10 1 - 80519 81256 . 1 738 0 -chrVII 80520 81256 HC_gene_3387_tx_11 3 - 80520 81256 . 1 737 0 -chrVII 80522 81256 HC_gene_3387_tx_12 1 - 80522 81256 . 1 735 0 -chrVII 80523 81256 HC_gene_3387_tx_13 2 - 80523 81256 . 1 734 0 -chrVII 80525 81256 HC_gene_3387_tx_14 1 - 80525 81256 . 1 732 0 -chrVII 80532 81256 HC_gene_3387_tx_15 1 - 80532 81256 . 1 725 0 -chrVII 80533 81256 HC_gene_3387_tx_16 1 - 80533 81256 . 1 724 0 -chrVII 81345 81754 HC_gene_3388_tx_1 24 - 81345 81754 . 1 410 0 -chrVII 81345 81830 HC_gene_3388_tx_2 7 - 81345 81830 . 1 486 0 -chrVII 81345 81896 HC_gene_3388_tx_3 21 - 81345 81896 . 1 552 0 -chrVII 81345 82304 HC_gene_3388_tx_4 110 - 81345 82304 . 1 960 0 -chrVII 81345 82304 HC_gene_3388_tx_5 1 - 81345 82304 . 2 763,133 0,827 -chrVII 81345 82304 HC_gene_3388_tx_6 1 - 81345 82304 . 2 236,652 0,308 -chrVII 81431 82947 HC_gene_2944_tx_1 2 + 81431 82947 . 1 1517 0 -chrVII 82446 82947 HC_gene_2944_tx_2 382 + 82446 82947 . 1 502 0 -chrVII 82789 84042 HC_gene_3389_tx_1 4 - 82789 84042 . 1 1254 0 -chrVII 82789 84117 HC_gene_3389_tx_2 1 - 82789 84117 . 1 1329 0 -chrVII 82789 84283 HC_gene_3389_tx_3 22 - 82789 84283 . 1 1495 0 -chrVII 82789 84283 HC_gene_3389_tx_4 1 - 82789 84283 . 2 718,731 0,764 -chrVII 82789 84283 HC_gene_3389_tx_5 1 - 82789 84283 . 2 539,842 0,653 -chrVII 82789 84283 HC_gene_3389_tx_6 1 - 82789 84283 . 2 620,767 0,728 -chrVII 82789 84283 HC_gene_3389_tx_7 1 - 82789 84283 . 2 100,1308 0,187 -chrVII 84617 87355 HC_gene_2945_tx_1 1 + 84617 87355 . 2 1431,1210 0,1529 -chrVII 84617 87355 HC_gene_2945_tx_2 2 + 84617 87355 . 1 2739 0 -chrVII 86992 87355 HC_gene_2945_tx_3 4 + 86992 87355 . 1 364 0 -chrVII 87508 89912 HC_gene_2946_tx_1 92 + 87508 89912 . 1 2405 0 -chrVII 87508 89912 HC_gene_2946_tx_2 1 + 87508 89912 . 2 1249,1099 0,1306 -chrVII 87508 89912 HC_gene_2946_tx_3 1 + 87508 89912 . 2 384,1465 0,940 -chrVII 87508 89912 HC_gene_2946_tx_4 1 + 87508 89912 . 2 319,1465 0,940 -chrVII 87508 89912 HC_gene_2946_tx_5 1 + 87508 89912 . 2 839,1500 0,905 -chrVII 87508 89912 HC_gene_2946_tx_6 1 + 87508 89912 . 2 131,1549 0,856 -chrVII 87508 89912 HC_gene_2946_tx_7 1 + 87508 89912 . 2 117,1885 0,520 -chrVII 87526 89912 HC_gene_2946_tx_8 1 + 87526 89912 . 2 605,1633 0,754 -chrVII 87868 89912 HC_gene_2946_tx_9 20 + 87868 89912 . 1 2045 0 -chrVII 88059 89912 HC_gene_2946_tx_10 21 + 88059 89912 . 1 1854 0 -chrVII 88111 89912 HC_gene_2946_tx_11 7 + 88111 89912 . 1 1802 0 -chrVII 88357 89912 HC_gene_2946_tx_12 19 + 88357 89912 . 1 1556 0 -chrVII 88357 89912 HC_gene_2946_tx_13 1 + 88357 89912 . 2 331,1110 0,446 -chrVII 88357 89912 HC_gene_2946_tx_14 1 + 88357 89912 . 2 550,952 0,604 -chrVII 88776 89912 HC_gene_2946_tx_15 12 + 88776 89912 . 1 1137 0 -chrVII 88847 89912 HC_gene_2946_tx_16 18 + 88847 89912 . 1 1066 0 -chrVII 89041 89912 HC_gene_2946_tx_17 38 + 89041 89912 . 1 872 0 -chrVII 89839 90368 HC_gene_3390_tx_1 6 - 89839 90368 . 1 530 0 -chrVII 89839 90974 HC_gene_3390_tx_3 1 - 89839 90974 . 1 1136 0 -chrVII 89839 91265 HC_gene_3390_tx_5 6 - 89839 91265 . 1 1427 0 -chrVII 89939 90368 HC_gene_3390_tx_2 10 - 89939 90368 . 1 430 0 -chrVII 89939 90974 HC_gene_3390_tx_4 7 - 89939 90974 . 1 1036 0 -chrVII 89939 91265 HC_gene_3390_tx_6 60 - 89939 91265 . 1 1327 0 -chrVII 89939 91265 HC_gene_3390_tx_7 1 - 89939 91265 . 2 386,790 0,537 -chrVII 90521 91315 LC_gene_2947_tx_1 1 + 90521 91315 . 1 795 0 -chrVII 91448 93684 HC_gene_2948_tx_1 1 + 91448 93684 . 1 2237 0 -chrVII 91448 93685 HC_gene_2948_tx_2 1 + 91448 93685 . 2 335,1836 0,402 -chrVII 91448 93685 HC_gene_2948_tx_3 2 + 91448 93685 . 1 2238 0 -chrVII 91448 93687 HC_gene_2948_tx_4 1 + 91448 93687 . 1 2240 0 -chrVII 91448 93702 HC_gene_2948_tx_5 2 + 91448 93702 . 1 2255 0 -chrVII 91595 93669 HC_gene_2948_tx_6 1 + 91595 93669 . 1 2075 0 -chrVII 92364 93038 LC_gene_3391_tx_1 1 - 92364 93038 . 1 675 0 -chrVII 92488 93642 HC_gene_2949_tx_1 1 + 92488 93642 . 1 1155 0 -chrVII 92488 93655 HC_gene_2949_tx_2 2 + 92488 93655 . 1 1168 0 -chrVII 92488 93672 HC_gene_2949_tx_3 2 + 92488 93672 . 1 1185 0 -chrVII 92488 93675 HC_gene_2949_tx_4 2 + 92488 93675 . 1 1188 0 -chrVII 92488 93676 HC_gene_2949_tx_5 1 + 92488 93676 . 1 1189 0 -chrVII 92488 93680 HC_gene_2949_tx_6 1 + 92488 93680 . 1 1193 0 -chrVII 92488 93681 HC_gene_2949_tx_7 1 + 92488 93681 . 1 1194 0 -chrVII 92488 93683 HC_gene_2949_tx_8 1 + 92488 93683 . 1 1196 0 -chrVII 92488 93684 HC_gene_2949_tx_9 1 + 92488 93684 . 1 1197 0 -chrVII 92488 93685 HC_gene_2949_tx_10 1 + 92488 93685 . 1 1198 0 -chrVII 92488 93686 HC_gene_2949_tx_11 1 + 92488 93686 . 1 1199 0 -chrVII 92488 93687 HC_gene_2949_tx_12 1 + 92488 93687 . 1 1200 0 -chrVII 92488 93692 HC_gene_2949_tx_13 1 + 92488 93692 . 1 1205 0 -chrVII 92488 93693 HC_gene_2949_tx_14 1 + 92488 93693 . 1 1206 0 -chrVII 92488 93702 HC_gene_2949_tx_15 2 + 92488 93702 . 1 1215 0 -chrVII 92488 93709 HC_gene_2949_tx_16 1 + 92488 93709 . 1 1222 0 -chrVII 92711 93643 HC_gene_2949_tx_17 1 + 92711 93643 . 1 933 0 -chrVII 92711 93684 HC_gene_2949_tx_18 1 + 92711 93684 . 1 974 0 -chrVII 92711 93699 HC_gene_2949_tx_19 2 + 92711 93699 . 1 989 0 -chrVII 93756 94302 HC_gene_2950_tx_1 1 + 93756 94302 . 1 547 0 -chrVII 93756 94583 HC_gene_2950_tx_2 82 + 93756 94583 . 1 828 0 -chrVII 93756 94695 HC_gene_2950_tx_3 3 + 93756 94695 . 1 940 0 -chrVII 93864 94583 HC_gene_2950_tx_4 1 + 93864 94583 . 1 720 0 -chrVII 93864 94695 HC_gene_2950_tx_5 1 + 93864 94695 . 1 832 0 -chrVII 94003 94583 HC_gene_2950_tx_6 5 + 94003 94583 . 1 581 0 -chrVII 94003 94695 HC_gene_2950_tx_7 1 + 94003 94695 . 1 693 0 -chrVII 94436 95246 HC_gene_3392_tx_1 1 - 94436 95246 . 1 811 0 -chrVII 94514 95246 HC_gene_3392_tx_2 1 - 94514 95246 . 1 733 0 -chrVII 95245 95738 HC_gene_2951_tx_1 1 + 95245 95738 . 1 494 0 -chrVII 95564 95772 MC_gene_3393_tx_1 1 - 95564 95772 . 1 209 0 -chrVII 95819 97123 HC_gene_2952_tx_1 182 + 95819 97123 . 1 1305 0 -chrVII 95819 97123 HC_gene_2952_tx_2 1 + 95819 97123 . 2 317,768 0,537 -chrVII 95819 97123 HC_gene_2952_tx_3 1 + 95819 97123 . 2 337,772 0,533 -chrVII 95819 97123 HC_gene_2952_tx_4 1 + 95819 97123 . 2 352,442 0,863 -chrVII 95819 97123 HC_gene_2952_tx_5 1 + 95819 97123 . 2 1200,41 0,1264 -chrVII 95819 97123 HC_gene_2952_tx_6 1 + 95819 97123 . 2 505,599 0,706 -chrVII 95819 97123 HC_gene_2952_tx_7 1 + 95819 97123 . 2 435,801 0,504 -chrVII 95819 97123 HC_gene_2952_tx_8 1 + 95819 97123 . 2 279,436 0,869 -chrVII 96642 97397 MC_gene_3394_tx_1 1 - 96642 97397 . 1 756 0 -chrVII 97319 98718 HC_gene_2953_tx_1 1 + 97319 98718 . 1 1400 0 -chrVII 97319 98718 HC_gene_2953_tx_2 1 + 97319 98718 . 2 232,868 0,532 -chrVII 97589 98718 HC_gene_2953_tx_3 2 + 97589 98718 . 1 1130 0 -chrVII 98875 102165 HC_gene_2954_tx_1 1 + 98875 102165 . 1 3291 0 -chrVII 98875 102187 HC_gene_2954_tx_2 1 + 98875 102187 . 2 2224,994 0,2319 -chrVII 98875 102196 HC_gene_2954_tx_3 1 + 98875 102196 . 1 3322 0 -chrVII 98875 102202 HC_gene_2954_tx_4 1 + 98875 102202 . 1 3328 0 -chrVII 98875 102207 HC_gene_2954_tx_5 2 + 98875 102207 . 1 3333 0 -chrVII 98875 102226 HC_gene_2954_tx_6 1 + 98875 102226 . 1 3352 0 -chrVII 98875 102329 HC_gene_2954_tx_7 5 + 98875 102329 . 1 3455 0 -chrVII 98875 102329 HC_gene_2954_tx_8 1 + 98875 102329 . 2 1138,2215 0,1240 -chrVII 98892 102207 HC_gene_2954_tx_9 1 + 98892 102207 . 2 159,2943 0,373 -chrVII 99037 102196 HC_gene_2954_tx_10 1 + 99037 102196 . 1 3160 0 -chrVII 99037 102219 HC_gene_2954_tx_11 1 + 99037 102219 . 1 3183 0 -chrVII 99037 102329 HC_gene_2954_tx_12 1 + 99037 102329 . 1 3293 0 -chrVII 100226 102189 HC_gene_2954_tx_13 1 + 100226 102189 . 2 150,1223 0,741 -chrVII 100226 102196 HC_gene_2954_tx_14 1 + 100226 102196 . 1 1971 0 -chrVII 100226 102207 HC_gene_2954_tx_15 1 + 100226 102207 . 1 1982 0 -chrVII 100226 102213 HC_gene_2954_tx_16 1 + 100226 102213 . 1 1988 0 -chrVII 100226 102223 HC_gene_2954_tx_17 1 + 100226 102223 . 1 1998 0 -chrVII 100226 102329 HC_gene_2954_tx_18 2 + 100226 102329 . 1 2104 0 -chrVII 100413 102192 HC_gene_2954_tx_19 1 + 100413 102192 . 1 1780 0 -chrVII 100413 102211 HC_gene_2954_tx_20 1 + 100413 102211 . 1 1799 0 -chrVII 100413 102329 HC_gene_2954_tx_21 3 + 100413 102329 . 1 1917 0 -chrVII 100728 102182 HC_gene_2954_tx_22 1 + 100728 102182 . 1 1455 0 -chrVII 100728 102186 HC_gene_2954_tx_23 2 + 100728 102186 . 1 1459 0 -chrVII 100728 102187 HC_gene_2954_tx_24 1 + 100728 102187 . 1 1460 0 -chrVII 100728 102191 HC_gene_2954_tx_25 1 + 100728 102191 . 1 1464 0 -chrVII 100728 102197 HC_gene_2954_tx_26 2 + 100728 102197 . 1 1470 0 -chrVII 100728 102204 HC_gene_2954_tx_27 1 + 100728 102204 . 1 1477 0 -chrVII 100728 102211 HC_gene_2954_tx_28 1 + 100728 102211 . 2 476,317 0,1167 -chrVII 100728 102213 HC_gene_2954_tx_29 1 + 100728 102213 . 1 1486 0 -chrVII 100728 102218 HC_gene_2954_tx_30 1 + 100728 102218 . 1 1491 0 -chrVII 100728 102223 HC_gene_2954_tx_31 1 + 100728 102223 . 2 293,1111 0,385 -chrVII 100728 102224 HC_gene_2954_tx_32 1 + 100728 102224 . 1 1497 0 -chrVII 100728 102236 HC_gene_2954_tx_33 1 + 100728 102236 . 1 1509 0 -chrVII 100728 102329 HC_gene_2954_tx_34 5 + 100728 102329 . 1 1602 0 -chrVII 101046 102182 HC_gene_2954_tx_35 1 + 101046 102182 . 1 1137 0 -chrVII 101046 102186 HC_gene_2954_tx_36 1 + 101046 102186 . 1 1141 0 -chrVII 101046 102198 HC_gene_2954_tx_37 1 + 101046 102198 . 1 1153 0 -chrVII 101046 102206 HC_gene_2954_tx_38 1 + 101046 102206 . 1 1161 0 -chrVII 101046 102207 HC_gene_2954_tx_39 1 + 101046 102207 . 1 1162 0 -chrVII 101046 102211 HC_gene_2954_tx_40 1 + 101046 102211 . 1 1166 0 -chrVII 101046 102213 HC_gene_2954_tx_41 1 + 101046 102213 . 1 1168 0 -chrVII 101046 102329 HC_gene_2954_tx_42 1 + 101046 102329 . 1 1284 0 -chrVII 101169 102165 HC_gene_2954_tx_43 1 + 101169 102165 . 1 997 0 -chrVII 101169 102191 HC_gene_2954_tx_44 1 + 101169 102191 . 1 1023 0 -chrVII 101169 102192 HC_gene_2954_tx_45 1 + 101169 102192 . 1 1024 0 -chrVII 101169 102193 HC_gene_2954_tx_46 1 + 101169 102193 . 1 1025 0 -chrVII 101169 102197 HC_gene_2954_tx_47 1 + 101169 102197 . 1 1029 0 -chrVII 101169 102199 HC_gene_2954_tx_48 2 + 101169 102199 . 1 1031 0 -chrVII 101169 102202 HC_gene_2954_tx_49 2 + 101169 102202 . 1 1034 0 -chrVII 101169 102206 HC_gene_2954_tx_50 1 + 101169 102206 . 1 1038 0 -chrVII 101169 102207 HC_gene_2954_tx_51 3 + 101169 102207 . 1 1039 0 -chrVII 101169 102329 HC_gene_2954_tx_52 3 + 101169 102329 . 1 1161 0 -chrVII 101291 102169 HC_gene_2954_tx_53 1 + 101291 102169 . 1 879 0 -chrVII 101291 102186 HC_gene_2954_tx_54 1 + 101291 102186 . 1 896 0 -chrVII 101291 102190 HC_gene_2954_tx_55 1 + 101291 102190 . 1 900 0 -chrVII 101291 102191 HC_gene_2954_tx_56 1 + 101291 102191 . 1 901 0 -chrVII 101291 102192 HC_gene_2954_tx_57 1 + 101291 102192 . 1 902 0 -chrVII 101291 102193 HC_gene_2954_tx_58 1 + 101291 102193 . 1 903 0 -chrVII 101291 102198 HC_gene_2954_tx_59 1 + 101291 102198 . 1 908 0 -chrVII 101291 102199 HC_gene_2954_tx_60 3 + 101291 102199 . 1 909 0 -chrVII 101291 102202 HC_gene_2954_tx_61 1 + 101291 102202 . 1 912 0 -chrVII 101291 102213 HC_gene_2954_tx_62 1 + 101291 102213 . 1 923 0 -chrVII 101291 102219 HC_gene_2954_tx_63 1 + 101291 102219 . 1 929 0 -chrVII 101291 102221 HC_gene_2954_tx_64 1 + 101291 102221 . 1 931 0 -chrVII 101291 102329 HC_gene_2954_tx_65 8 + 101291 102329 . 1 1039 0 -chrVII 101625 102182 HC_gene_2954_tx_66 1 + 101625 102182 . 1 558 0 -chrVII 101625 102191 HC_gene_2954_tx_67 2 + 101625 102191 . 1 567 0 -chrVII 101625 102195 HC_gene_2954_tx_68 1 + 101625 102195 . 1 571 0 -chrVII 101625 102197 HC_gene_2954_tx_69 2 + 101625 102197 . 1 573 0 -chrVII 101625 102204 HC_gene_2954_tx_70 1 + 101625 102204 . 1 580 0 -chrVII 101625 102207 HC_gene_2954_tx_71 1 + 101625 102207 . 1 583 0 -chrVII 101625 102208 HC_gene_2954_tx_72 1 + 101625 102208 . 1 584 0 -chrVII 101625 102211 HC_gene_2954_tx_73 1 + 101625 102211 . 1 587 0 -chrVII 101625 102213 HC_gene_2954_tx_74 1 + 101625 102213 . 1 589 0 -chrVII 101625 102218 HC_gene_2954_tx_75 1 + 101625 102218 . 1 594 0 -chrVII 101625 102219 HC_gene_2954_tx_76 1 + 101625 102219 . 1 595 0 -chrVII 101625 102329 HC_gene_2954_tx_77 6 + 101625 102329 . 1 705 0 -chrVII 101813 102167 HC_gene_2954_tx_78 1 + 101813 102167 . 1 355 0 -chrVII 101813 102182 HC_gene_2954_tx_79 1 + 101813 102182 . 1 370 0 -chrVII 101813 102186 HC_gene_2954_tx_80 1 + 101813 102186 . 1 374 0 -chrVII 101813 102191 HC_gene_2954_tx_81 1 + 101813 102191 . 1 379 0 -chrVII 101813 102194 HC_gene_2954_tx_82 1 + 101813 102194 . 1 382 0 -chrVII 101813 102197 HC_gene_2954_tx_83 2 + 101813 102197 . 1 385 0 -chrVII 101813 102199 HC_gene_2954_tx_84 3 + 101813 102199 . 1 387 0 -chrVII 101813 102201 HC_gene_2954_tx_85 2 + 101813 102201 . 1 389 0 -chrVII 101813 102204 HC_gene_2954_tx_86 1 + 101813 102204 . 1 392 0 -chrVII 101813 102207 HC_gene_2954_tx_87 6 + 101813 102207 . 1 395 0 -chrVII 101813 102208 HC_gene_2954_tx_88 1 + 101813 102208 . 1 396 0 -chrVII 101813 102212 HC_gene_2954_tx_89 3 + 101813 102212 . 1 400 0 -chrVII 101813 102213 HC_gene_2954_tx_90 1 + 101813 102213 . 1 401 0 -chrVII 101813 102220 HC_gene_2954_tx_91 1 + 101813 102220 . 1 408 0 -chrVII 101813 102235 HC_gene_2954_tx_92 1 + 101813 102235 . 1 423 0 -chrVII 101813 102329 HC_gene_2954_tx_93 11 + 101813 102329 . 1 517 0 -chrVII 102049 102710 HC_gene_3395_tx_1 1 - 102049 102710 . 1 662 0 -chrVII 102113 102710 HC_gene_3395_tx_2 7 - 102113 102710 . 1 598 0 -chrVII 102113 102793 HC_gene_3395_tx_3 2 - 102113 102793 . 1 681 0 -chrVII 102113 102923 HC_gene_3395_tx_4 3 - 102113 102923 . 1 811 0 -chrVII 102113 103007 HC_gene_3395_tx_5 1 - 102113 103007 . 1 895 0 -chrVII 102113 103373 HC_gene_3396_tx_1 2 - 102113 103373 . 1 1261 0 -chrVII 102113 104252 HC_gene_3396_tx_18 2 - 102113 104252 . 1 2140 0 -chrVII 102113 106047 HC_gene_3396_tx_21 1 - 102113 106047 . 1 3935 0 -chrVII 102113 107577 HC_gene_3396_tx_22 1 - 102113 107577 . 1 5465 0 -chrVII 102228 104252 HC_gene_3396_tx_19 1 - 102228 104252 . 2 1111,277 0,1748 -chrVII 102238 103626 HC_gene_3396_tx_2 1 - 102238 103626 . 1 1389 0 -chrVII 102244 103007 HC_gene_3395_tx_6 1 - 102244 103007 . 1 764 0 -chrVII 102245 102923 HC_gene_3395_tx_7 1 - 102245 102923 . 1 679 0 -chrVII 102245 103373 HC_gene_3396_tx_3 1 - 102245 103373 . 1 1129 0 -chrVII 102246 102793 HC_gene_3395_tx_8 1 - 102246 102793 . 1 548 0 -chrVII 102248 102923 HC_gene_3395_tx_9 1 - 102248 102923 . 1 676 0 -chrVII 102250 102793 HC_gene_3395_tx_10 2 - 102250 102793 . 1 544 0 -chrVII 102250 103373 HC_gene_3396_tx_4 1 - 102250 103373 . 1 1124 0 -chrVII 102250 105771 HC_gene_3396_tx_23 1 - 102250 105771 . 1 3522 0 -chrVII 102252 102710 HC_gene_3395_tx_11 1 - 102252 102710 . 1 459 0 -chrVII 102252 102793 HC_gene_3395_tx_12 1 - 102252 102793 . 1 542 0 -chrVII 102253 102710 HC_gene_3395_tx_13 1 - 102253 102710 . 1 458 0 -chrVII 102253 102793 HC_gene_3395_tx_14 1 - 102253 102793 . 1 541 0 -chrVII 102257 103007 HC_gene_3395_tx_15 1 - 102257 103007 . 1 751 0 -chrVII 102257 103373 HC_gene_3396_tx_5 1 - 102257 103373 . 1 1117 0 -chrVII 102258 102710 HC_gene_3395_tx_16 1 - 102258 102710 . 1 453 0 -chrVII 102258 102793 HC_gene_3395_tx_17 1 - 102258 102793 . 1 536 0 -chrVII 102258 106522 HC_gene_3396_tx_24 1 - 102258 106522 . 1 4265 0 -chrVII 102258 107577 HC_gene_3396_tx_25 1 - 102258 107577 . 1 5320 0 -chrVII 102259 102710 HC_gene_3395_tx_18 3 - 102259 102710 . 1 452 0 -chrVII 102259 102793 HC_gene_3395_tx_19 9 - 102259 102793 . 1 535 0 -chrVII 102259 102923 HC_gene_3395_tx_20 1 - 102259 102923 . 1 665 0 -chrVII 102259 103007 HC_gene_3395_tx_21 3 - 102259 103007 . 1 749 0 -chrVII 102259 103373 HC_gene_3396_tx_6 2 - 102259 103373 . 1 1115 0 -chrVII 102259 103626 HC_gene_3396_tx_7 1 - 102259 103626 . 1 1368 0 -chrVII 102259 105771 HC_gene_3396_tx_26 1 - 102259 105771 . 2 995,2451 0,1062 -chrVII 102259 107577 HC_gene_3396_tx_27 1 - 102259 107577 . 2 924,4286 0,1033 -chrVII 102260 102710 HC_gene_3395_tx_22 1 - 102260 102710 . 1 451 0 -chrVII 102260 102793 HC_gene_3395_tx_23 1 - 102260 102793 . 1 534 0 -chrVII 102260 103373 HC_gene_3396_tx_8 1 - 102260 103373 . 1 1114 0 -chrVII 102263 102923 HC_gene_3395_tx_24 1 - 102263 102923 . 1 661 0 -chrVII 102263 103626 HC_gene_3396_tx_9 1 - 102263 103626 . 1 1364 0 -chrVII 102264 102710 HC_gene_3395_tx_25 2 - 102264 102710 . 1 447 0 -chrVII 102264 102793 HC_gene_3395_tx_26 2 - 102264 102793 . 1 530 0 -chrVII 102264 103007 HC_gene_3395_tx_27 1 - 102264 103007 . 1 744 0 -chrVII 102264 104252 HC_gene_3396_tx_20 1 - 102264 104252 . 2 1455,356 0,1633 -chrVII 102264 105069 HC_gene_3396_tx_28 1 - 102264 105069 . 2 1270,1477 0,1329 -chrVII 102265 102710 HC_gene_3395_tx_28 1 - 102265 102710 . 1 446 0 -chrVII 102265 103373 HC_gene_3396_tx_10 1 - 102265 103373 . 1 1109 0 -chrVII 102266 102710 HC_gene_3395_tx_29 1 - 102266 102710 . 1 445 0 -chrVII 102266 103373 HC_gene_3396_tx_11 1 - 102266 103373 . 1 1108 0 -chrVII 102267 102793 HC_gene_3395_tx_30 1 - 102267 102793 . 1 527 0 -chrVII 102268 102923 HC_gene_3395_tx_31 1 - 102268 102923 . 1 656 0 -chrVII 102326 103373 HC_gene_3396_tx_12 1 - 102326 103373 . 1 1048 0 -chrVII 102326 105627 HC_gene_3396_tx_29 1 - 102326 105627 . 1 3302 0 -chrVII 102327 102793 HC_gene_3395_tx_32 1 - 102327 102793 . 1 467 0 -chrVII 102327 103373 HC_gene_3396_tx_13 1 - 102327 103373 . 1 1047 0 -chrVII 102332 107577 HC_gene_3396_tx_30 1 - 102332 107577 . 1 5246 0 -chrVII 102337 103007 HC_gene_3395_tx_33 1 - 102337 103007 . 1 671 0 -chrVII 102338 103007 HC_gene_3395_tx_34 1 - 102338 103007 . 1 670 0 -chrVII 102339 102923 HC_gene_3395_tx_35 1 - 102339 102923 . 1 585 0 -chrVII 102343 102710 HC_gene_3395_tx_36 1 - 102343 102710 . 1 368 0 -chrVII 102344 103007 HC_gene_3395_tx_37 1 - 102344 103007 . 1 664 0 -chrVII 102345 103373 HC_gene_3396_tx_14 1 - 102345 103373 . 1 1029 0 -chrVII 102347 102923 HC_gene_3395_tx_38 1 - 102347 102923 . 2 37,491 0,86 -chrVII 102347 105627 HC_gene_3396_tx_31 1 - 102347 105627 . 1 3281 0 -chrVII 102361 102710 HC_gene_3395_tx_39 1 - 102361 102710 . 1 350 0 -chrVII 102361 103373 HC_gene_3396_tx_15 1 - 102361 103373 . 1 1013 0 -chrVII 102364 103373 HC_gene_3396_tx_16 1 - 102364 103373 . 1 1010 0 -chrVII 102365 103007 HC_gene_3395_tx_40 1 - 102365 103007 . 1 643 0 -chrVII 102366 102793 HC_gene_3395_tx_41 1 - 102366 102793 . 1 428 0 -chrVII 102370 102710 HC_gene_3395_tx_42 1 - 102370 102710 . 1 341 0 -chrVII 102372 103373 HC_gene_3396_tx_17 1 - 102372 103373 . 1 1002 0 -chrVII 108137 109886 LC_gene_3397_tx_1 1 - 108137 109886 . 2 913,759 0,991 -chrVII 109808 110592 MC_gene_2955_tx_1 1 + 109808 110592 . 1 785 0 -chrVII 109879 110333 MC_gene_3398_tx_1 1 - 109879 110333 . 1 455 0 -chrVII 110484 110698 MC_gene_3399_tx_1 1 - 110484 110698 . 1 215 0 -chrVII 111217 112109 HC_gene_3400_tx_1 32 - 111217 112109 . 1 893 0 -chrVII 111625 112170 LC_gene_2956_tx_1 1 + 111625 112170 . 1 546 0 -chrVII 112404 112968 HC_gene_3401_tx_1 25 - 112404 112968 . 1 565 0 -chrVII 112404 113171 HC_gene_3401_tx_2 12 - 112404 113171 . 1 768 0 -chrVII 112404 113998 HC_gene_3401_tx_3 4 - 112404 113998 . 1 1595 0 -chrVII 112404 114078 HC_gene_3401_tx_4 6 - 112404 114078 . 1 1675 0 -chrVII 112404 114307 HC_gene_3401_tx_5 3 - 112404 114307 . 1 1904 0 -chrVII 112404 114307 HC_gene_3401_tx_6 1 - 112404 114307 . 2 750,1077 0,827 -chrVII 112404 114729 HC_gene_3401_tx_7 1 - 112404 114729 . 2 1014,1212 0,1114 -chrVII 112404 114729 HC_gene_3401_tx_8 1 - 112404 114729 . 2 783,1499 0,827 -chrVII 112404 114729 HC_gene_3401_tx_9 21 - 112404 114729 . 1 2326 0 -chrVII 112404 114729 HC_gene_3401_tx_10 1 - 112404 114729 . 2 720,1359 0,967 -chrVII 112404 114729 HC_gene_3401_tx_11 1 - 112404 114729 . 2 1018,1242 0,1084 -chrVII 112404 114729 HC_gene_3401_tx_12 1 - 112404 114729 . 2 750,1279 0,1047 -chrVII 114933 115276 HC_gene_2957_tx_1 27 + 114933 115276 . 1 344 0 -chrVII 114933 115689 HC_gene_2957_tx_2 1 + 114933 115689 . 1 757 0 -chrVII 115935 117623 HC_gene_2958_tx_1 1 + 115935 117623 . 2 1535,62 0,1627 -chrVII 115935 117625 HC_gene_2958_tx_2 2 + 115935 117625 . 1 1691 0 -chrVII 115935 117626 HC_gene_2958_tx_3 6 + 115935 117626 . 1 1692 0 -chrVII 115935 117627 HC_gene_2958_tx_4 5 + 115935 117627 . 1 1693 0 -chrVII 115935 117628 HC_gene_2958_tx_5 1 + 115935 117628 . 1 1694 0 -chrVII 115935 117629 HC_gene_2958_tx_6 2 + 115935 117629 . 1 1695 0 -chrVII 115935 117630 HC_gene_2958_tx_7 4 + 115935 117630 . 1 1696 0 -chrVII 115935 117631 HC_gene_2958_tx_8 7 + 115935 117631 . 1 1697 0 -chrVII 115935 117632 HC_gene_2958_tx_9 5 + 115935 117632 . 1 1698 0 -chrVII 115935 117633 HC_gene_2958_tx_10 10 + 115935 117633 . 1 1699 0 -chrVII 115935 117634 HC_gene_2958_tx_11 3 + 115935 117634 . 1 1700 0 -chrVII 115935 117636 HC_gene_2958_tx_12 1 + 115935 117636 . 1 1702 0 -chrVII 115935 117637 HC_gene_2958_tx_13 3 + 115935 117637 . 1 1703 0 -chrVII 115935 117638 HC_gene_2958_tx_14 3 + 115935 117638 . 1 1704 0 -chrVII 115935 117638 HC_gene_2958_tx_15 1 + 115935 117638 . 2 1606,32 0,1672 -chrVII 115935 117642 HC_gene_2958_tx_16 19 + 115935 117642 . 1 1708 0 -chrVII 115935 117643 HC_gene_2958_tx_17 21 + 115935 117643 . 1 1709 0 -chrVII 115935 117643 HC_gene_2958_tx_18 1 + 115935 117643 . 2 944,330 0,1379 -chrVII 115935 117644 HC_gene_2958_tx_19 58 + 115935 117644 . 1 1710 0 -chrVII 115935 117644 HC_gene_2958_tx_20 1 + 115935 117644 . 2 411,897 0,813 -chrVII 115935 117645 HC_gene_2958_tx_21 8 + 115935 117645 . 1 1711 0 -chrVII 115935 117646 HC_gene_2958_tx_22 7 + 115935 117646 . 1 1712 0 -chrVII 115935 117646 HC_gene_2958_tx_23 1 + 115935 117646 . 2 653,846 0,866 -chrVII 115935 117651 HC_gene_2958_tx_24 1 + 115935 117651 . 1 1717 0 -chrVII 115935 117653 HC_gene_2958_tx_25 1 + 115935 117653 . 1 1719 0 -chrVII 115935 117657 HC_gene_2958_tx_26 4 + 115935 117657 . 1 1723 0 -chrVII 115935 117658 HC_gene_2958_tx_27 4 + 115935 117658 . 1 1724 0 -chrVII 115935 117670 HC_gene_2958_tx_28 1 + 115935 117670 . 1 1736 0 -chrVII 115935 117674 HC_gene_2958_tx_29 1 + 115935 117674 . 1 1740 0 -chrVII 115935 117677 HC_gene_2958_tx_30 1 + 115935 117677 . 1 1743 0 -chrVII 115935 117678 HC_gene_2958_tx_31 2 + 115935 117678 . 1 1744 0 -chrVII 115935 117680 HC_gene_2958_tx_32 1 + 115935 117680 . 1 1746 0 -chrVII 115935 117681 HC_gene_2958_tx_33 1 + 115935 117681 . 1 1747 0 -chrVII 115935 117685 HC_gene_2958_tx_34 1 + 115935 117685 . 1 1751 0 -chrVII 115935 117688 HC_gene_2958_tx_35 4 + 115935 117688 . 1 1754 0 -chrVII 115935 117689 HC_gene_2958_tx_36 3 + 115935 117689 . 1 1755 0 -chrVII 115935 117690 HC_gene_2958_tx_37 1 + 115935 117690 . 1 1756 0 -chrVII 115935 117692 HC_gene_2958_tx_38 1 + 115935 117692 . 1 1758 0 -chrVII 115935 117693 HC_gene_2958_tx_39 1 + 115935 117693 . 2 959,739 0,1020 -chrVII 115935 117693 HC_gene_2958_tx_40 1 + 115935 117693 . 1 1759 0 -chrVII 115935 117694 HC_gene_2958_tx_41 2 + 115935 117694 . 1 1760 0 -chrVII 115935 117695 HC_gene_2958_tx_42 3 + 115935 117695 . 1 1761 0 -chrVII 115935 117696 HC_gene_2958_tx_43 1 + 115935 117696 . 1 1762 0 -chrVII 115935 117703 HC_gene_2958_tx_44 1 + 115935 117703 . 1 1769 0 -chrVII 115935 117703 HC_gene_2958_tx_45 1 + 115935 117703 . 2 401,1330 0,439 -chrVII 115935 117710 HC_gene_2958_tx_46 1 + 115935 117710 . 1 1776 0 -chrVII 115935 117716 HC_gene_2958_tx_47 1 + 115935 117716 . 1 1782 0 -chrVII 115935 117720 HC_gene_2958_tx_48 1 + 115935 117720 . 1 1786 0 -chrVII 115935 117721 HC_gene_2958_tx_49 1 + 115935 117721 . 3 332,363,958 0,401,829 -chrVII 115935 117726 HC_gene_2958_tx_50 1 + 115935 117726 . 1 1792 0 -chrVII 115935 117736 HC_gene_2958_tx_51 1 + 115935 117736 . 1 1802 0 -chrVII 115935 117739 HC_gene_2958_tx_52 1 + 115935 117739 . 1 1805 0 -chrVII 115935 117745 HC_gene_2958_tx_53 1 + 115935 117745 . 1 1811 0 -chrVII 115935 117747 HC_gene_2958_tx_54 1 + 115935 117747 . 1 1813 0 -chrVII 116525 117629 HC_gene_2958_tx_55 1 + 116525 117629 . 1 1105 0 -chrVII 116525 117640 HC_gene_2958_tx_56 1 + 116525 117640 . 1 1116 0 -chrVII 116525 117642 HC_gene_2958_tx_57 2 + 116525 117642 . 1 1118 0 -chrVII 116525 117643 HC_gene_2958_tx_58 2 + 116525 117643 . 1 1119 0 -chrVII 116525 117644 HC_gene_2958_tx_59 5 + 116525 117644 . 1 1120 0 -chrVII 116525 117645 HC_gene_2958_tx_60 1 + 116525 117645 . 1 1121 0 -chrVII 116525 117694 HC_gene_2958_tx_61 1 + 116525 117694 . 1 1170 0 -chrVII 116525 117702 HC_gene_2958_tx_62 1 + 116525 117702 . 1 1178 0 -chrVII 116588 117623 HC_gene_2958_tx_63 1 + 116588 117623 . 1 1036 0 -chrVII 116588 117626 HC_gene_2958_tx_64 1 + 116588 117626 . 1 1039 0 -chrVII 116588 117632 HC_gene_2958_tx_65 3 + 116588 117632 . 1 1045 0 -chrVII 116588 117636 HC_gene_2958_tx_66 1 + 116588 117636 . 1 1049 0 -chrVII 116588 117640 HC_gene_2958_tx_67 1 + 116588 117640 . 1 1053 0 -chrVII 116588 117642 HC_gene_2958_tx_68 4 + 116588 117642 . 1 1055 0 -chrVII 116588 117643 HC_gene_2958_tx_69 4 + 116588 117643 . 1 1056 0 -chrVII 116588 117644 HC_gene_2958_tx_70 5 + 116588 117644 . 1 1057 0 -chrVII 116588 117645 HC_gene_2958_tx_71 4 + 116588 117645 . 1 1058 0 -chrVII 116588 117657 HC_gene_2958_tx_72 2 + 116588 117657 . 1 1070 0 -chrVII 116588 117658 HC_gene_2958_tx_73 1 + 116588 117658 . 1 1071 0 -chrVII 116588 117681 HC_gene_2958_tx_74 1 + 116588 117681 . 1 1094 0 -chrVII 116588 117689 HC_gene_2958_tx_75 1 + 116588 117689 . 1 1102 0 -chrVII 116588 117694 HC_gene_2958_tx_76 1 + 116588 117694 . 1 1107 0 -chrVII 116588 117695 HC_gene_2958_tx_77 1 + 116588 117695 . 1 1108 0 -chrVII 116588 117742 HC_gene_2958_tx_78 1 + 116588 117742 . 1 1155 0 -chrVII 116711 117631 HC_gene_2958_tx_79 5 + 116711 117631 . 1 921 0 -chrVII 116711 117633 HC_gene_2958_tx_80 1 + 116711 117633 . 1 923 0 -chrVII 116711 117638 HC_gene_2958_tx_81 2 + 116711 117638 . 1 928 0 -chrVII 116711 117642 HC_gene_2958_tx_82 6 + 116711 117642 . 1 932 0 -chrVII 116711 117643 HC_gene_2958_tx_83 9 + 116711 117643 . 1 933 0 -chrVII 116711 117644 HC_gene_2958_tx_84 9 + 116711 117644 . 1 934 0 -chrVII 116711 117645 HC_gene_2958_tx_85 1 + 116711 117645 . 1 935 0 -chrVII 116711 117650 HC_gene_2958_tx_86 2 + 116711 117650 . 1 940 0 -chrVII 116711 117653 HC_gene_2958_tx_87 1 + 116711 117653 . 1 943 0 -chrVII 116711 117656 HC_gene_2958_tx_88 1 + 116711 117656 . 1 946 0 -chrVII 116711 117657 HC_gene_2958_tx_89 2 + 116711 117657 . 1 947 0 -chrVII 116711 117678 HC_gene_2958_tx_90 1 + 116711 117678 . 1 968 0 -chrVII 116711 117681 HC_gene_2958_tx_91 2 + 116711 117681 . 1 971 0 -chrVII 116711 117685 HC_gene_2958_tx_92 2 + 116711 117685 . 1 975 0 -chrVII 116711 117689 HC_gene_2958_tx_93 1 + 116711 117689 . 1 979 0 -chrVII 116711 117694 HC_gene_2958_tx_94 1 + 116711 117694 . 1 984 0 -chrVII 116711 117703 HC_gene_2958_tx_95 1 + 116711 117703 . 1 993 0 -chrVII 116711 117716 HC_gene_2958_tx_96 1 + 116711 117716 . 1 1006 0 -chrVII 117116 117623 HC_gene_2958_tx_97 1 + 117116 117623 . 1 508 0 -chrVII 117116 117625 HC_gene_2958_tx_98 1 + 117116 117625 . 1 510 0 -chrVII 117116 117626 HC_gene_2958_tx_99 1 + 117116 117626 . 1 511 0 -chrVII 117116 117629 HC_gene_2958_tx_100 1 + 117116 117629 . 1 514 0 -chrVII 117116 117631 HC_gene_2958_tx_101 4 + 117116 117631 . 1 516 0 -chrVII 117116 117632 HC_gene_2958_tx_102 3 + 117116 117632 . 1 517 0 -chrVII 117116 117633 HC_gene_2958_tx_103 2 + 117116 117633 . 1 518 0 -chrVII 117116 117637 HC_gene_2958_tx_104 1 + 117116 117637 . 1 522 0 -chrVII 117116 117641 HC_gene_2958_tx_105 1 + 117116 117641 . 1 526 0 -chrVII 117116 117642 HC_gene_2958_tx_106 4 + 117116 117642 . 1 527 0 -chrVII 117116 117643 HC_gene_2958_tx_107 4 + 117116 117643 . 1 528 0 -chrVII 117116 117644 HC_gene_2958_tx_108 16 + 117116 117644 . 1 529 0 -chrVII 117116 117645 HC_gene_2958_tx_109 2 + 117116 117645 . 1 530 0 -chrVII 117116 117646 HC_gene_2958_tx_110 1 + 117116 117646 . 1 531 0 -chrVII 117116 117657 HC_gene_2958_tx_111 3 + 117116 117657 . 1 542 0 -chrVII 117116 117658 HC_gene_2958_tx_112 2 + 117116 117658 . 1 543 0 -chrVII 117116 117662 HC_gene_2958_tx_113 1 + 117116 117662 . 1 547 0 -chrVII 117116 117678 HC_gene_2958_tx_114 3 + 117116 117678 . 1 563 0 -chrVII 117116 117682 HC_gene_2958_tx_115 1 + 117116 117682 . 1 567 0 -chrVII 117116 117688 HC_gene_2958_tx_116 1 + 117116 117688 . 1 573 0 -chrVII 117116 117695 HC_gene_2958_tx_117 2 + 117116 117695 . 1 580 0 -chrVII 117116 117721 HC_gene_2958_tx_118 2 + 117116 117721 . 1 606 0 -chrVII 117116 117729 HC_gene_2958_tx_119 1 + 117116 117729 . 1 614 0 -chrVII 117595 118295 HC_gene_3402_tx_1 2 - 117595 118295 . 1 701 0 -chrVII 117595 118472 HC_gene_3402_tx_3 4 - 117595 118472 . 1 878 0 -chrVII 117595 118819 HC_gene_3402_tx_5 2 - 117595 118819 . 1 1225 0 -chrVII 117595 120960 HC_gene_3402_tx_7 2 - 117595 120960 . 1 3366 0 -chrVII 117668 118295 HC_gene_3402_tx_2 6 - 117668 118295 . 1 628 0 -chrVII 117668 118472 HC_gene_3402_tx_4 4 - 117668 118472 . 1 805 0 -chrVII 117668 118819 HC_gene_3402_tx_6 7 - 117668 118819 . 1 1152 0 -chrVII 117668 120960 HC_gene_3402_tx_8 11 - 117668 120960 . 1 3293 0 -chrVII 117668 120960 HC_gene_3402_tx_9 1 - 117668 120960 . 2 1826,1338 0,1955 -chrVII 117668 120960 HC_gene_3402_tx_10 1 - 117668 120960 . 2 1792,1200 0,2093 -chrVII 117668 120960 HC_gene_3402_tx_11 1 - 117668 120960 . 2 1492,1737 0,1556 -chrVII 121165 122149 MC_gene_2959_tx_1 1 + 121165 122149 . 1 985 0 -chrVII 122421 122692 HC_gene_2960_tx_1 2 + 122421 122692 . 1 272 0 -chrVII 122421 122869 HC_gene_2960_tx_2 1 + 122421 122869 . 1 449 0 -chrVII 122586 123024 HC_gene_3403_tx_1 122 - 122586 123024 . 1 439 0 -chrVII 122586 123187 HC_gene_3403_tx_2 16 - 122586 123187 . 1 602 0 -chrVII 122586 123330 HC_gene_3403_tx_3 460 - 122586 123330 . 1 745 0 -chrVII 122601 122869 HC_gene_2960_tx_3 2 + 122601 122869 . 1 269 0 -chrVII 123511 124261 MC_gene_3404_tx_1 1 - 123511 124261 . 1 751 0 -chrVII 123583 124348 HC_gene_2961_tx_1 95 + 123583 124348 . 1 766 0 -chrVII 123583 124460 HC_gene_2961_tx_2 4 + 123583 124460 . 1 878 0 -chrVII 123583 124529 HC_gene_2961_tx_3 8 + 123583 124529 . 1 947 0 -chrVII 123583 124662 HC_gene_2961_tx_4 2 + 123583 124662 . 1 1080 0 -chrVII 124697 125263 MC_gene_2962_tx_1 1 + 124697 125263 . 1 567 0 -chrVII 127567 129481 MC_gene_2963_tx_1 1 + 127567 129481 . 1 1915 0 -chrVII 128515 129231 MC_gene_2963_tx_2 1 + 128515 129231 . 1 717 0 -chrVII 129474 129677 HC_gene_2964_tx_1 1 + 129474 129677 . 1 204 0 -chrVII 129474 129786 HC_gene_2964_tx_2 5 + 129474 129786 . 1 313 0 -chrVII 129485 130837 LC_gene_3405_tx_1 1 - 129485 130837 . 1 1353 0 -chrVII 129817 131268 HC_gene_2965_tx_1 44 + 129817 131268 . 1 1452 0 -chrVII 129817 131268 HC_gene_2965_tx_2 1 + 129817 131268 . 2 308,756 0,696 -chrVII 130642 131268 HC_gene_2965_tx_3 10 + 130642 131268 . 1 627 0 -chrVII 131176 131291 MC_gene_3406_tx_1 1 - 131176 131291 . 1 116 0 -chrVII 131481 133442 HC_gene_2966_tx_1 1 + 131481 133442 . 1 1962 0 -chrVII 134160 139664 HC_gene_2967_tx_1 2 + 134160 139664 . 1 5505 0 -chrVII 135174 139664 HC_gene_2967_tx_2 1 + 135174 139664 . 1 4491 0 -chrVII 135920 139664 HC_gene_2967_tx_3 2 + 135920 139664 . 1 3745 0 -chrVII 136157 139664 HC_gene_2967_tx_4 1 + 136157 139664 . 1 3508 0 -chrVII 136632 139664 HC_gene_2967_tx_5 5 + 136632 139664 . 1 3033 0 -chrVII 137665 139664 HC_gene_2967_tx_6 7 + 137665 139664 . 1 2000 0 -chrVII 137788 139664 HC_gene_2967_tx_7 9 + 137788 139664 . 1 1877 0 -chrVII 138145 139664 HC_gene_2967_tx_8 17 + 138145 139664 . 1 1520 0 -chrVII 138309 139664 HC_gene_2967_tx_9 14 + 138309 139664 . 1 1356 0 -chrVII 138542 139664 HC_gene_2967_tx_10 16 + 138542 139664 . 1 1123 0 -chrVII 139129 139664 HC_gene_2967_tx_11 34 + 139129 139664 . 1 536 0 -chrVII 139560 140024 HC_gene_3407_tx_1 167 - 139560 140024 . 1 465 0 -chrVII 139560 140207 HC_gene_3407_tx_2 21 - 139560 140207 . 1 648 0 -chrVII 140245 141779 HC_gene_3408_tx_1 11 - 140245 141779 . 1 1535 0 -chrVII 140413 141394 MC_gene_2968_tx_1 1 + 140413 141394 . 1 982 0 -chrVII 141870 143728 HC_gene_3409_tx_1 1 - 141870 143728 . 1 1859 0 -chrVII 141870 144035 HC_gene_3409_tx_2 5 - 141870 144035 . 1 2166 0 -chrVII 141870 144136 HC_gene_3409_tx_3 12 - 141870 144136 . 1 2267 0 -chrVII 141870 144136 HC_gene_3409_tx_4 1 - 141870 144136 . 2 1102,222 0,2045 -chrVII 142010 144090 LC_gene_2969_tx_1 1 + 142010 144090 . 1 2081 0 -chrVII 142193 144136 HC_gene_3409_tx_5 1 - 142193 144136 . 1 1944 0 -chrVII 142204 144035 HC_gene_3409_tx_6 1 - 142204 144035 . 1 1832 0 -chrVII 143983 144509 HC_gene_3410_tx_1 1 - 143983 144509 . 1 527 0 -chrVII 144357 144827 HC_gene_2970_tx_1 9 + 144357 144827 . 1 471 0 -chrVII 144357 145449 HC_gene_2970_tx_2 4 + 144357 145449 . 1 1093 0 -chrVII 144743 145168 LC_gene_3411_tx_1 1 - 144743 145168 . 1 426 0 -chrVII 144779 145249 HC_gene_2970_tx_3 2 + 144779 145249 . 1 471 0 -chrVII 144779 145251 HC_gene_2970_tx_4 1 + 144779 145251 . 1 473 0 -chrVII 144779 145253 HC_gene_2970_tx_5 4 + 144779 145253 . 1 475 0 -chrVII 144779 145255 HC_gene_2970_tx_6 1 + 144779 145255 . 1 477 0 -chrVII 144779 145259 HC_gene_2970_tx_7 1 + 144779 145259 . 1 481 0 -chrVII 144779 145260 HC_gene_2970_tx_8 1 + 144779 145260 . 1 482 0 -chrVII 144779 145263 HC_gene_2970_tx_9 1 + 144779 145263 . 1 485 0 -chrVII 144779 145267 HC_gene_2970_tx_10 1 + 144779 145267 . 1 489 0 -chrVII 144779 145270 HC_gene_2970_tx_11 3 + 144779 145270 . 1 492 0 -chrVII 144779 145272 HC_gene_2970_tx_12 1 + 144779 145272 . 1 494 0 -chrVII 144779 145449 HC_gene_2970_tx_13 230 + 144779 145449 . 1 671 0 -chrVII 144779 145449 HC_gene_2970_tx_14 1 + 144779 145449 . 2 147,429 0,242 -chrVII 144961 145248 HC_gene_2970_tx_15 1 + 144961 145248 . 1 288 0 -chrVII 144961 145449 HC_gene_2970_tx_16 34 + 144961 145449 . 1 489 0 -chrVII 144961 145449 HC_gene_2970_tx_17 1 + 144961 145449 . 2 128,141 0,348 -chrVII 145133 145449 HC_gene_2970_tx_18 30 + 145133 145449 . 1 317 0 -chrVII 145344 145918 HC_gene_3412_tx_1 6 - 145344 145918 . 1 575 0 -chrVII 145344 146378 HC_gene_3412_tx_2 1 - 145344 146378 . 1 1035 0 -chrVII 145344 146434 HC_gene_3412_tx_3 1 - 145344 146434 . 1 1091 0 -chrVII 145344 147673 HC_gene_3412_tx_8 2 - 145344 147673 . 1 2330 0 -chrVII 145344 147903 HC_gene_3412_tx_9 3 - 145344 147903 . 1 2560 0 -chrVII 145344 147903 HC_gene_3412_tx_10 1 - 145344 147903 . 2 1763,656 0,1904 -chrVII 145440 147441 HC_gene_3412_tx_11 1 - 145440 147441 . 1 2002 0 -chrVII 145510 145918 HC_gene_3412_tx_19 1 - 145510 145918 . 1 409 0 -chrVII 145510 146378 HC_gene_3412_tx_4 1 - 145510 146378 . 1 869 0 -chrVII 145510 147543 HC_gene_3412_tx_12 1 - 145510 147543 . 1 2034 0 -chrVII 145601 145918 HC_gene_3412_tx_20 11 - 145601 145918 . 1 318 0 -chrVII 145601 146378 HC_gene_3412_tx_5 3 - 145601 146378 . 1 778 0 -chrVII 145601 146434 HC_gene_3412_tx_6 1 - 145601 146434 . 1 834 0 -chrVII 145601 147315 HC_gene_3412_tx_13 3 - 145601 147315 . 1 1715 0 -chrVII 145601 147441 HC_gene_3412_tx_14 4 - 145601 147441 . 1 1841 0 -chrVII 145601 147673 HC_gene_3412_tx_15 5 - 145601 147673 . 1 2073 0 -chrVII 145601 147673 HC_gene_3412_tx_16 1 - 145601 147673 . 2 887,1089 0,984 -chrVII 145601 147903 HC_gene_3412_tx_17 5 - 145601 147903 . 1 2303 0 -chrVII 145715 146378 HC_gene_3412_tx_7 2 - 145715 146378 . 1 664 0 -chrVII 145715 147903 HC_gene_3412_tx_18 1 - 145715 147903 . 1 2189 0 -chrVII 147868 148169 MC_gene_2971_tx_1 1 + 147868 148169 . 1 302 0 -chrVII 148158 148435 HC_gene_3413_tx_1 150 - 148158 148435 . 1 278 0 -chrVII 148158 148612 HC_gene_3413_tx_2 6535 - 148158 148612 . 1 455 0 -chrVII 148158 148980 HC_gene_3413_tx_3 68 - 148158 148980 . 1 823 0 -chrVII 149417 149942 HC_gene_3414_tx_1 23 - 149417 149942 . 1 526 0 -chrVII 149417 150012 HC_gene_3414_tx_2 31 - 149417 150012 . 1 596 0 -chrVII 149417 150635 HC_gene_3414_tx_3 258 - 149417 150635 . 2 767,110 0,1109 -chrVII 149417 150635 HC_gene_3414_tx_4 11 - 149417 150635 . 1 1219 0 -chrVII 149417 150635 HC_gene_3414_tx_5 7 - 149417 150635 . 2 759,110 0,1109 -chrVII 149417 150635 HC_gene_3414_tx_6 1 - 149417 150635 . 2 747,110 0,1109 -chrVII 149417 150635 HC_gene_3414_tx_7 1 - 149417 150635 . 2 742,406 0,813 -chrVII 149417 150635 HC_gene_3414_tx_8 1 - 149417 150635 . 3 250,423,108 0,322,1111 -chrVII 149417 150635 HC_gene_3414_tx_9 1 - 149417 150635 . 2 745,115 0,1104 -chrVII 149417 150635 HC_gene_3414_tx_10 1 - 149417 150635 . 3 220,465,110 0,302,1109 -chrVII 149417 150635 HC_gene_3414_tx_11 1 - 149417 150635 . 2 745,123 0,1096 -chrVII 149417 150635 HC_gene_3414_tx_12 1 - 149417 150635 . 2 756,109 0,1110 -chrVII 149417 150635 HC_gene_3414_tx_13 1 - 149417 150635 . 2 745,125 0,1094 -chrVII 149533 150627 MC_gene_2972_tx_1 1 + 149533 150627 . 1 1095 0 -chrVII 149609 150635 HC_gene_3414_tx_14 1 - 149609 150635 . 2 575,110 0,917 -chrVII 149610 150635 HC_gene_3414_tx_15 1 - 149610 150635 . 2 574,110 0,916 -chrVII 149612 150635 HC_gene_3414_tx_16 1 - 149612 150635 . 2 572,110 0,914 -chrVII 149613 150635 HC_gene_3414_tx_17 1 - 149613 150635 . 2 571,110 0,913 -chrVII 149614 149942 HC_gene_3414_tx_18 1 - 149614 149942 . 1 329 0 -chrVII 149705 150500 MC_gene_2972_tx_2 1 + 149705 150500 . 1 796 0 -chrVII 150992 152217 HC_gene_3415_tx_1 4 - 150992 152217 . 1 1226 0 -chrVII 150992 152785 HC_gene_3415_tx_2 51 - 150992 152785 . 1 1794 0 -chrVII 150992 152785 HC_gene_3415_tx_3 1 - 150992 152785 . 2 844,103 0,1691 -chrVII 150992 152785 HC_gene_3415_tx_4 1 - 150992 152785 . 2 1475,153 0,1641 -chrVII 150992 152785 HC_gene_3415_tx_5 1 - 150992 152785 . 4 542,470,189,298 0,675,1226,1496 -chrVII 153079 153855 HC_gene_3416_tx_1 6 - 153079 153855 . 1 777 0 -chrVII 153079 154025 HC_gene_3416_tx_2 2 - 153079 154025 . 1 947 0 -chrVII 153079 154085 HC_gene_3416_tx_3 1 - 153079 154085 . 1 1007 0 -chrVII 153079 154316 HC_gene_3416_tx_4 14 - 153079 154316 . 1 1238 0 -chrVII 153203 154612 MC_gene_2973_tx_1 1 + 153203 154612 . 1 1410 0 -chrVII 154501 154917 HC_gene_3417_tx_1 5 - 154501 154917 . 1 417 0 -chrVII 154501 156076 HC_gene_3417_tx_2 19 - 154501 156076 . 1 1576 0 -chrVII 154917 156202 LC_gene_2974_tx_1 1 + 154917 156202 . 1 1286 0 -chrVII 156087 157207 HC_gene_3418_tx_1 1 - 156087 157207 . 1 1121 0 -chrVII 157223 157631 MC_gene_3419_tx_1 1 - 157223 157631 . 1 409 0 -chrVII 157852 159208 HC_gene_2975_tx_1 53 + 157852 159208 . 1 1357 0 -chrVII 157852 159208 HC_gene_2975_tx_2 1 + 157852 159208 . 2 318,770 0,587 -chrVII 157852 159208 HC_gene_2975_tx_3 1 + 157852 159208 . 2 282,809 0,548 -chrVII 158044 159208 HC_gene_2975_tx_4 4 + 158044 159208 . 1 1165 0 -chrVII 158192 159208 HC_gene_2975_tx_5 14 + 158192 159208 . 1 1017 0 -chrVII 158192 159208 HC_gene_2975_tx_6 1 + 158192 159208 . 2 414,367 0,650 -chrVII 158359 159208 HC_gene_2975_tx_7 1 + 158359 159208 . 1 850 0 -chrVII 158429 159208 HC_gene_2975_tx_8 12 + 158429 159208 . 1 780 0 -chrVII 158522 159208 HC_gene_2975_tx_9 15 + 158522 159208 . 1 687 0 -chrVII 159027 159705 MC_gene_3420_tx_1 1 - 159027 159705 . 1 679 0 -chrVII 159883 163031 HC_gene_2976_tx_1 1 + 159883 163031 . 1 3149 0 -chrVII 163155 163442 MC_gene_2977_tx_1 1 + 163155 163442 . 1 288 0 -chrVII 163320 164304 HC_gene_3421_tx_1 3 - 163320 164304 . 1 985 0 -chrVII 163320 164796 HC_gene_3421_tx_2 7 - 163320 164796 . 1 1477 0 -chrVII 163320 164921 HC_gene_3421_tx_3 2 - 163320 164921 . 1 1602 0 -chrVII 163320 165171 HC_gene_3421_tx_4 13 - 163320 165171 . 1 1852 0 -chrVII 165407 165826 HC_gene_3422_tx_1 1 - 165407 165826 . 1 420 0 -chrVII 165407 165955 HC_gene_3422_tx_2 2 - 165407 165955 . 1 549 0 -chrVII 165407 166082 HC_gene_3422_tx_3 1 - 165407 166082 . 1 676 0 -chrVII 165407 166542 HC_gene_3422_tx_4 2 - 165407 166542 . 1 1136 0 -chrVII 165572 166079 LC_gene_2978_tx_1 1 + 165572 166079 . 1 508 0 -chrVII 165643 165826 HC_gene_3422_tx_5 1 - 165643 165826 . 1 184 0 -chrVII 165643 165955 HC_gene_3422_tx_6 2 - 165643 165955 . 1 313 0 -chrVII 165643 166082 HC_gene_3422_tx_7 5 - 165643 166082 . 1 440 0 -chrVII 166352 166674 HC_gene_2979_tx_1 4 + 166352 166674 . 1 323 0 -chrVII 166849 167508 HC_gene_3423_tx_1 4 - 166849 167508 . 1 660 0 -chrVII 167054 167395 HC_gene_2980_tx_1 1 + 167054 167395 . 1 342 0 -chrVII 167847 168083 HC_gene_2981_tx_1 1 + 167847 168083 . 1 237 0 -chrVII 169573 171217 HC_gene_2982_tx_1 2 + 169573 171217 . 1 1645 0 -chrVII 169626 171217 HC_gene_2982_tx_2 1 + 169626 171217 . 2 396,596 0,996 -chrVII 169626 171217 HC_gene_2982_tx_3 1 + 169626 171217 . 1 1592 0 -chrVII 169783 171217 HC_gene_2982_tx_4 1 + 169783 171217 . 2 297,1098 0,337 -chrVII 169783 171217 HC_gene_2982_tx_5 9 + 169783 171217 . 1 1435 0 -chrVII 169958 171217 HC_gene_2982_tx_6 8 + 169958 171217 . 1 1260 0 -chrVII 170285 171217 HC_gene_2982_tx_7 11 + 170285 171217 . 1 933 0 -chrVII 170495 170955 HC_gene_2982_tx_8 1 + 170495 170955 . 1 461 0 -chrVII 170495 170958 HC_gene_2982_tx_9 1 + 170495 170958 . 1 464 0 -chrVII 170495 171118 HC_gene_2982_tx_10 1 + 170495 171118 . 1 624 0 -chrVII 170495 171217 HC_gene_2982_tx_11 13 + 170495 171217 . 1 723 0 -chrVII 170804 171217 HC_gene_2982_tx_12 16 + 170804 171217 . 1 414 0 -chrVII 171306 172469 HC_gene_3424_tx_1 4 - 171306 172469 . 1 1164 0 -chrVII 171306 172902 HC_gene_3424_tx_2 3 - 171306 172902 . 1 1597 0 -chrVII 171306 173125 HC_gene_3424_tx_3 14 - 171306 173125 . 1 1820 0 -chrVII 171306 174359 HC_gene_3424_tx_4 1 - 171306 174359 . 2 1948,1035 0,2019 -chrVII 171306 174359 HC_gene_3424_tx_5 1 - 171306 174359 . 2 1352,1537 0,1517 -chrVII 173272 174451 MC_gene_2983_tx_1 1 + 173272 174451 . 1 1180 0 -chrVII 174524 175548 HC_gene_2984_tx_1 18 + 174524 175548 . 1 1025 0 -chrVII 174946 176995 HC_gene_3425_tx_1 1 - 174946 176995 . 1 2050 0 -chrVII 175010 175965 HC_gene_3425_tx_22 1 - 175010 175965 . 1 956 0 -chrVII 175115 177680 HC_gene_3425_tx_2 1 - 175115 177680 . 1 2566 0 -chrVII 175285 175965 HC_gene_3425_tx_23 53 - 175285 175965 . 1 681 0 -chrVII 175285 176265 HC_gene_3425_tx_24 12 - 175285 176265 . 1 981 0 -chrVII 175285 176446 HC_gene_3425_tx_25 38 - 175285 176446 . 1 1162 0 -chrVII 175285 176995 HC_gene_3425_tx_3 10 - 175285 176995 . 1 1711 0 -chrVII 175285 176995 HC_gene_3425_tx_4 1 - 175285 176995 . 2 466,1192 0,519 -chrVII 175285 177298 HC_gene_3425_tx_5 6 - 175285 177298 . 1 2014 0 -chrVII 175285 177298 HC_gene_3425_tx_6 1 - 175285 177298 . 2 487,1470 0,544 -chrVII 175285 177298 HC_gene_3425_tx_7 1 - 175285 177298 . 2 931,624 0,1390 -chrVII 175285 177680 HC_gene_3425_tx_8 4 - 175285 177680 . 1 2396 0 -chrVII 175285 177680 HC_gene_3425_tx_9 1 - 175285 177680 . 2 1989,351 0,2045 -chrVII 175285 177906 HC_gene_3425_tx_10 5 - 175285 177906 . 1 2622 0 -chrVII 175285 177906 HC_gene_3425_tx_11 1 - 175285 177906 . 2 1348,1187 0,1435 -chrVII 175285 178396 HC_gene_3425_tx_12 3 - 175285 178396 . 1 3112 0 -chrVII 175285 178761 HC_gene_3425_tx_13 1 - 175285 178761 . 2 1139,2272 0,1205 -chrVII 175285 179101 HC_gene_3425_tx_14 3 - 175285 179101 . 1 3817 0 -chrVII 175285 179476 HC_gene_3425_tx_15 2 - 175285 179476 . 1 4192 0 -chrVII 175285 179476 HC_gene_3425_tx_16 1 - 175285 179476 . 2 1193,2892 0,1300 -chrVII 175285 179936 HC_gene_3425_tx_17 1 - 175285 179936 . 1 4652 0 -chrVII 175285 180047 HC_gene_3425_tx_18 2 - 175285 180047 . 1 4763 0 -chrVII 175285 180202 HC_gene_3425_tx_19 1 - 175285 180202 . 1 4918 0 -chrVII 175285 180446 HC_gene_3425_tx_20 9 - 175285 180446 . 1 5162 0 -chrVII 175285 180446 HC_gene_3425_tx_21 1 - 175285 180446 . 2 2521,2535 0,2627 -chrVII 180667 182230 HC_gene_2985_tx_1 59 + 180667 182230 . 1 1564 0 -chrVII 180878 182230 HC_gene_2985_tx_2 2 + 180878 182230 . 1 1353 0 -chrVII 181397 182230 HC_gene_2985_tx_3 11 + 181397 182230 . 1 834 0 -chrVII 181450 182230 HC_gene_2985_tx_4 7 + 181450 182230 . 1 781 0 -chrVII 182364 184183 HC_gene_2986_tx_1 37 + 182364 184183 . 1 1820 0 -chrVII 182364 184183 HC_gene_2986_tx_2 1 + 182364 184183 . 2 996,766 0,1054 -chrVII 182364 184183 HC_gene_2986_tx_3 1 + 182364 184183 . 2 999,706 0,1114 -chrVII 182364 184507 HC_gene_2986_tx_4 1 + 182364 184507 . 1 2144 0 -chrVII 182364 185001 HC_gene_2986_tx_5 1 + 182364 185001 . 1 2638 0 -chrVII 182364 185088 HC_gene_2986_tx_6 2 + 182364 185088 . 1 2725 0 -chrVII 184073 185607 LC_gene_3426_tx_1 1 - 184073 185607 . 1 1535 0 -chrVII 185985 187392 HC_gene_2987_tx_1 6 + 185985 187392 . 1 1408 0 -chrVII 185985 187470 HC_gene_2987_tx_2 16 + 185985 187470 . 1 1486 0 -chrVII 185985 187545 HC_gene_2987_tx_3 9 + 185985 187545 . 1 1561 0 -chrVII 185985 187545 HC_gene_2987_tx_4 1 + 185985 187545 . 2 900,337 0,1224 -chrVII 186978 187392 HC_gene_2987_tx_5 3 + 186978 187392 . 1 415 0 -chrVII 186978 187470 HC_gene_2987_tx_6 1 + 186978 187470 . 1 493 0 -chrVII 186978 187545 HC_gene_2987_tx_7 1 + 186978 187545 . 1 568 0 -chrVII 187454 188195 HC_gene_3427_tx_1 20 - 187454 188195 . 1 742 0 -chrVII 187454 188287 HC_gene_3427_tx_2 11 - 187454 188287 . 1 834 0 -chrVII 187454 188456 HC_gene_3427_tx_3 18 - 187454 188456 . 1 1003 0 -chrVII 187454 188913 HC_gene_3427_tx_4 5 - 187454 188913 . 1 1460 0 -chrVII 187454 189132 HC_gene_3427_tx_5 1 - 187454 189132 . 1 1679 0 -chrVII 187454 189199 HC_gene_3427_tx_6 3 - 187454 189199 . 1 1746 0 -chrVII 190454 190903 HC_gene_3428_tx_1 5 - 190454 190903 . 1 450 0 -chrVII 191107 191958 HC_gene_2988_tx_1 46 + 191107 191958 . 1 852 0 -chrVII 191308 191958 HC_gene_2988_tx_2 3 + 191308 191958 . 1 651 0 -chrVII 191382 191958 HC_gene_2988_tx_3 2 + 191382 191958 . 1 577 0 -chrVII 191435 191958 HC_gene_2988_tx_4 7 + 191435 191958 . 1 524 0 -chrVII 191797 192299 HC_gene_3429_tx_1 1 - 191797 192299 . 1 503 0 -chrVII 191797 193312 HC_gene_3429_tx_3 1 - 191797 193312 . 1 1516 0 -chrVII 191873 192299 HC_gene_3429_tx_2 6 - 191873 192299 . 1 427 0 -chrVII 191873 192630 HC_gene_3429_tx_7 6 - 191873 192630 . 1 758 0 -chrVII 191873 192698 HC_gene_3429_tx_8 4 - 191873 192698 . 1 826 0 -chrVII 191873 193312 HC_gene_3429_tx_4 30 - 191873 193312 . 1 1440 0 -chrVII 191873 193312 HC_gene_3429_tx_5 1 - 191873 193312 . 2 936,199 0,1241 -chrVII 191873 193312 HC_gene_3429_tx_6 1 - 191873 193312 . 2 930,438 0,1002 -chrVII 192517 193312 HC_gene_3429_tx_9 2 - 192517 193312 . 1 796 0 -chrVII 193497 193667 HC_gene_2989_tx_1 5 + 193497 193667 . 1 171 0 -chrVII 193569 196093 HC_gene_3430_tx_1 1 - 193569 196093 . 1 2525 0 -chrVII 193569 196562 HC_gene_3430_tx_2 2 - 193569 196562 . 1 2994 0 -chrVII 193569 196562 HC_gene_3430_tx_3 1 - 193569 196562 . 2 999,1932 0,1062 -chrVII 193569 196844 HC_gene_3430_tx_4 1 - 193569 196844 . 1 3276 0 -chrVII 193569 197908 HC_gene_3430_tx_5 1 - 193569 197908 . 1 4340 0 -chrVII 196655 197908 HC_gene_3430_tx_6 1 - 196655 197908 . 1 1254 0 -chrVII 197989 199215 HC_gene_2990_tx_1 17 + 197989 199215 . 1 1227 0 -chrVII 198113 199215 HC_gene_2990_tx_2 34 + 198113 199215 . 1 1103 0 -chrVII 198113 199215 HC_gene_2990_tx_3 1 + 198113 199215 . 2 213,830 0,273 -chrVII 199058 199685 HC_gene_3431_tx_1 16 - 199058 199685 . 1 628 0 -chrVII 199058 199888 HC_gene_3431_tx_2 18 - 199058 199888 . 1 831 0 -chrVII 199058 199978 HC_gene_3431_tx_3 18 - 199058 199978 . 1 921 0 -chrVII 199058 200252 HC_gene_3431_tx_4 78 - 199058 200252 . 1 1195 0 -chrVII 199058 200252 HC_gene_3431_tx_5 1 - 199058 200252 . 2 739,240 0,955 -chrVII 199058 200252 HC_gene_3431_tx_6 1 - 199058 200252 . 2 869,210 0,985 -chrVII 199058 200252 HC_gene_3431_tx_7 1 - 199058 200252 . 2 957,184 0,1011 -chrVII 199803 200414 MC_gene_2991_tx_1 1 + 199803 200414 . 1 612 0 -chrVII 200437 202391 HC_gene_2992_tx_1 13 + 200437 202391 . 1 1955 0 -chrVII 200442 200829 LC_gene_3432_tx_1 1 - 200442 200829 . 1 388 0 -chrVII 200508 202391 HC_gene_2992_tx_2 1 + 200508 202391 . 2 373,1444 0,440 -chrVII 200698 202391 HC_gene_2992_tx_3 3 + 200698 202391 . 1 1694 0 -chrVII 200869 202391 HC_gene_2992_tx_4 2 + 200869 202391 . 1 1523 0 -chrVII 202311 203948 LC_gene_3433_tx_1 1 - 202311 203948 . 1 1638 0 -chrVII 202701 203924 HC_gene_2993_tx_1 20 + 202701 203924 . 1 1224 0 -chrVII 205777 206421 HC_gene_2994_tx_1 1 + 205777 206421 . 1 645 0 -chrVII 205860 206063 MC_gene_3434_tx_1 1 - 205860 206063 . 1 204 0 -chrVII 206295 206960 LC_gene_3435_tx_1 1 - 206295 206960 . 1 666 0 -chrVII 206718 208668 MC_gene_2995_tx_1 1 + 206718 208668 . 1 1951 0 -chrVII 206893 208574 MC_gene_2995_tx_2 1 + 206893 208574 . 1 1682 0 -chrVII 208884 209365 LC_gene_3436_tx_1 1 - 208884 209365 . 1 482 0 -chrVII 208953 210142 HC_gene_2996_tx_1 109 + 208953 210142 . 1 1190 0 -chrVII 209438 210142 HC_gene_2996_tx_2 8 + 209438 210142 . 1 705 0 -chrVII 209706 210142 HC_gene_2996_tx_3 12 + 209706 210142 . 1 437 0 -chrVII 210333 213782 MC_gene_2997_tx_1 1 + 210333 213782 . 1 3450 0 -chrVII 210381 213748 HC_gene_3437_tx_1 2 - 210381 213748 . 1 3368 0 -chrVII 212895 213795 MC_gene_2998_tx_1 1 + 212895 213795 . 1 901 0 -chrVII 213941 215284 HC_gene_2999_tx_1 5 + 213941 215284 . 1 1344 0 -chrVII 213941 215396 HC_gene_2999_tx_2 1 + 213941 215396 . 1 1456 0 -chrVII 213941 215405 HC_gene_2999_tx_3 1 + 213941 215405 . 1 1465 0 -chrVII 213941 215412 HC_gene_2999_tx_4 1 + 213941 215412 . 1 1472 0 -chrVII 213941 215413 HC_gene_2999_tx_5 1 + 213941 215413 . 1 1473 0 -chrVII 213941 215419 HC_gene_2999_tx_6 1 + 213941 215419 . 1 1479 0 -chrVII 213941 215436 HC_gene_2999_tx_7 1 + 213941 215436 . 1 1496 0 -chrVII 213941 215522 HC_gene_2999_tx_8 1 + 213941 215522 . 1 1582 0 -chrVII 213941 215608 HC_gene_2999_tx_9 20 + 213941 215608 . 1 1668 0 -chrVII 213941 215608 HC_gene_2999_tx_10 1 + 213941 215608 . 2 993,630 0,1038 -chrVII 215158 216101 HC_gene_3438_tx_1 7 - 215158 216101 . 1 944 0 -chrVII 215251 216101 HC_gene_3438_tx_2 23 - 215251 216101 . 1 851 0 -chrVII 216247 217347 HC_gene_3000_tx_1 63 + 216247 217347 . 1 1101 0 -chrVII 216672 217347 HC_gene_3000_tx_2 7 + 216672 217347 . 1 676 0 -chrVII 216811 217347 HC_gene_3000_tx_3 1 + 216811 217347 . 2 83,337 0,200 -chrVII 216811 217347 HC_gene_3000_tx_4 18 + 216811 217347 . 1 537 0 -chrVII 216891 217280 LC_gene_3439_tx_1 1 - 216891 217280 . 1 390 0 -chrVII 217468 220926 HC_gene_3001_tx_1 1 + 217468 220926 . 2 502,2295 0,1164 -chrVII 217468 221011 HC_gene_3001_tx_2 3 + 217468 221011 . 1 3544 0 -chrVII 220392 221011 HC_gene_3001_tx_3 13 + 220392 221011 . 1 620 0 -chrVII 220519 221011 HC_gene_3001_tx_4 14 + 220519 221011 . 1 493 0 -chrVII 220638 220926 HC_gene_3001_tx_5 1 + 220638 220926 . 1 289 0 -chrVII 220638 221011 HC_gene_3001_tx_6 15 + 220638 221011 . 1 374 0 -chrVII 220934 221441 HC_gene_3440_tx_1 12 - 220934 221441 . 1 508 0 -chrVII 220934 222020 HC_gene_3440_tx_2 4 - 220934 222020 . 1 1087 0 -chrVII 220934 223980 HC_gene_3440_tx_3 1 - 220934 223980 . 1 3047 0 -chrVII 220934 224577 HC_gene_3440_tx_4 4 - 220934 224577 . 1 3644 0 -chrVII 220934 224686 HC_gene_3440_tx_5 2 - 220934 224686 . 1 3753 0 -chrVII 220934 225210 HC_gene_3440_tx_6 2 - 220934 225210 . 1 4277 0 -chrVII 220934 225384 HC_gene_3440_tx_7 1 - 220934 225384 . 2 3935,388 0,4063 -chrVII 220934 225384 HC_gene_3440_tx_8 2 - 220934 225384 . 1 4451 0 -chrVII 220934 225604 HC_gene_3440_tx_9 1 - 220934 225604 . 1 4671 0 -chrVII 220934 225748 HC_gene_3440_tx_10 11 - 220934 225748 . 1 4815 0 -chrVII 220934 225748 HC_gene_3440_tx_11 1 - 220934 225748 . 2 3720,1050 0,3765 -chrVII 220934 225748 HC_gene_3440_tx_12 1 - 220934 225748 . 2 3758,963 0,3852 -chrVII 220934 225929 HC_gene_3440_tx_13 1 - 220934 225929 . 1 4996 0 -chrVII 225829 226150 HC_gene_3441_tx_1 8 - 225829 226150 . 1 322 0 -chrVII 225935 226136 HC_gene_3441_tx_2 1 - 225935 226136 . 1 202 0 -chrVII 225935 226150 HC_gene_3441_tx_3 10 - 225935 226150 . 1 216 0 -chrVII 226363 227640 HC_gene_3002_tx_1 1 + 226363 227640 . 2 829,385 0,893 -chrVII 226366 227640 HC_gene_3002_tx_2 340 + 226366 227640 . 1 1275 0 -chrVII 226366 227640 HC_gene_3002_tx_3 1 + 226366 227640 . 2 316,773 0,502 -chrVII 226366 227640 HC_gene_3002_tx_4 1 + 226366 227640 . 2 854,368 0,907 -chrVII 226366 227640 HC_gene_3002_tx_5 1 + 226366 227640 . 2 673,548 0,727 -chrVII 226366 227640 HC_gene_3002_tx_6 1 + 226366 227640 . 2 806,429 0,846 -chrVII 226581 227640 HC_gene_3002_tx_7 34 + 226581 227640 . 1 1060 0 -chrVII 226942 227640 HC_gene_3002_tx_8 54 + 226942 227640 . 1 699 0 -chrVII 227186 227640 HC_gene_3002_tx_9 123 + 227186 227640 . 1 455 0 -chrVII 227186 227640 HC_gene_3002_tx_10 1 + 227186 227640 . 2 231,162 0,293 -chrVII 227624 228045 HC_gene_3442_tx_1 358 - 227624 228045 . 1 422 0 -chrVII 227624 228167 HC_gene_3442_tx_2 290 - 227624 228167 . 1 544 0 -chrVII 227624 228347 HC_gene_3442_tx_3 3018 - 227624 228347 . 1 724 0 -chrVII 228778 230121 MC_gene_3003_tx_1 1 + 228778 230121 . 1 1344 0 -chrVII 230172 232400 HC_gene_3004_tx_1 4 + 230172 232400 . 1 2229 0 -chrVII 230172 232400 HC_gene_3004_tx_2 1 + 230172 232400 . 2 1239,934 0,1295 -chrVII 230172 232482 HC_gene_3004_tx_3 11 + 230172 232482 . 1 2311 0 -chrVII 230172 232482 HC_gene_3004_tx_4 1 + 230172 232482 . 2 1209,938 0,1373 -chrVII 231189 232400 HC_gene_3004_tx_5 2 + 231189 232400 . 1 1212 0 -chrVII 231189 232482 HC_gene_3004_tx_6 4 + 231189 232482 . 1 1294 0 -chrVII 232286 234534 HC_gene_3443_tx_1 3 - 232286 234534 . 1 2249 0 -chrVII 232376 234534 HC_gene_3443_tx_2 13 - 232376 234534 . 1 2159 0 -chrVII 232376 234534 HC_gene_3443_tx_3 1 - 232376 234534 . 2 949,1072 0,1087 -chrVII 234565 235111 HC_gene_3444_tx_1 1 - 234565 235111 . 1 547 0 -chrVII 234565 235474 HC_gene_3444_tx_2 3 - 234565 235474 . 1 910 0 -chrVII 234565 235788 HC_gene_3444_tx_3 1 - 234565 235788 . 1 1224 0 -chrVII 234565 235993 HC_gene_3444_tx_4 14 - 234565 235993 . 1 1429 0 -chrVII 234729 235213 LC_gene_3005_tx_1 1 + 234729 235213 . 1 485 0 -chrVII 235757 236235 MC_gene_3006_tx_1 1 + 235757 236235 . 1 479 0 -chrVII 236019 238165 HC_gene_3445_tx_1 1 - 236019 238165 . 1 2147 0 -chrVII 236091 238165 HC_gene_3445_tx_2 1 - 236091 238165 . 1 2075 0 -chrVII 236114 237664 HC_gene_3445_tx_14 1 - 236114 237664 . 1 1551 0 -chrVII 236120 238165 HC_gene_3445_tx_3 1 - 236120 238165 . 1 2046 0 -chrVII 236131 238165 HC_gene_3445_tx_4 2 - 236131 238165 . 1 2035 0 -chrVII 236132 238165 HC_gene_3445_tx_5 1 - 236132 238165 . 1 2034 0 -chrVII 236134 236937 HC_gene_3445_tx_19 1 - 236134 236937 . 1 804 0 -chrVII 236135 238165 HC_gene_3445_tx_6 1 - 236135 238165 . 1 2031 0 -chrVII 236136 237664 HC_gene_3445_tx_15 1 - 236136 237664 . 1 1529 0 -chrVII 236136 238165 HC_gene_3445_tx_7 1 - 236136 238165 . 1 2030 0 -chrVII 236140 236598 HC_gene_3445_tx_26 1 - 236140 236598 . 1 459 0 -chrVII 236143 236598 HC_gene_3445_tx_27 1 - 236143 236598 . 1 456 0 -chrVII 236143 238165 HC_gene_3445_tx_8 1 - 236143 238165 . 1 2023 0 -chrVII 236144 237664 HC_gene_3445_tx_16 1 - 236144 237664 . 1 1521 0 -chrVII 236145 236598 HC_gene_3445_tx_28 1 - 236145 236598 . 1 454 0 -chrVII 236145 236937 HC_gene_3445_tx_20 1 - 236145 236937 . 1 793 0 -chrVII 236145 237664 HC_gene_3445_tx_17 1 - 236145 237664 . 1 1520 0 -chrVII 236146 238165 HC_gene_3445_tx_9 1 - 236146 238165 . 1 2020 0 -chrVII 236147 236598 HC_gene_3445_tx_29 1 - 236147 236598 . 1 452 0 -chrVII 236154 236937 HC_gene_3445_tx_21 1 - 236154 236937 . 1 784 0 -chrVII 236154 237664 HC_gene_3445_tx_18 1 - 236154 237664 . 1 1511 0 -chrVII 236156 236937 HC_gene_3445_tx_22 1 - 236156 236937 . 1 782 0 -chrVII 236160 236598 HC_gene_3445_tx_30 1 - 236160 236598 . 1 439 0 -chrVII 236162 236598 HC_gene_3445_tx_31 1 - 236162 236598 . 1 437 0 -chrVII 236163 236598 HC_gene_3445_tx_32 1 - 236163 236598 . 1 436 0 -chrVII 236164 236937 HC_gene_3445_tx_23 1 - 236164 236937 . 1 774 0 -chrVII 236165 236937 HC_gene_3445_tx_24 1 - 236165 236937 . 1 773 0 -chrVII 236168 238165 HC_gene_3445_tx_10 1 - 236168 238165 . 1 1998 0 -chrVII 236180 238165 HC_gene_3445_tx_11 1 - 236180 238165 . 1 1986 0 -chrVII 236182 236937 HC_gene_3445_tx_25 1 - 236182 236937 . 1 756 0 -chrVII 236184 236598 HC_gene_3445_tx_33 1 - 236184 236598 . 1 415 0 -chrVII 236198 238165 HC_gene_3445_tx_12 2 - 236198 238165 . 1 1968 0 -chrVII 236200 236598 HC_gene_3445_tx_34 1 - 236200 236598 . 1 399 0 -chrVII 236209 238165 HC_gene_3445_tx_13 1 - 236209 238165 . 1 1957 0 -chrVII 237480 238165 HC_gene_3445_tx_35 1 - 237480 238165 . 1 686 0 -chrVII 238344 240767 HC_gene_3007_tx_1 2 + 238344 240767 . 1 2424 0 -chrVII 238344 241183 HC_gene_3007_tx_2 6 + 238344 241183 . 1 2840 0 -chrVII 238344 241183 HC_gene_3007_tx_3 1 + 238344 241183 . 2 1451,1331 0,1509 -chrVII 240661 241183 HC_gene_3007_tx_4 5 + 240661 241183 . 1 523 0 -chrVII 241109 241851 HC_gene_3446_tx_1 8 - 241109 241851 . 1 743 0 -chrVII 241109 242489 HC_gene_3446_tx_2 4 - 241109 242489 . 1 1381 0 -chrVII 241109 242689 HC_gene_3446_tx_3 2 - 241109 242689 . 1 1581 0 -chrVII 241109 244989 HC_gene_3446_tx_4 2 - 241109 244989 . 1 3881 0 -chrVII 241109 245200 HC_gene_3446_tx_5 5 - 241109 245200 . 1 4092 0 -chrVII 241295 242946 HC_gene_3446_tx_7 1 - 241295 242946 . 1 1652 0 -chrVII 241295 245200 HC_gene_3446_tx_6 2 - 241295 245200 . 1 3906 0 -chrVII 242655 242946 HC_gene_3446_tx_8 1 - 242655 242946 . 1 292 0 -chrVII 245401 248504 HC_gene_3008_tx_1 10 + 245401 248504 . 1 3104 0 -chrVII 245401 248504 HC_gene_3008_tx_2 1 + 245401 248504 . 2 717,2333 0,771 -chrVII 247589 248504 HC_gene_3008_tx_3 8 + 247589 248504 . 1 916 0 -chrVII 249844 252852 HC_gene_3009_tx_1 1 + 249844 252852 . 2 43,2766 0,243 -chrVII 249844 252874 HC_gene_3009_tx_2 1 + 249844 252874 . 1 3031 0 -chrVII 249844 252895 HC_gene_3009_tx_3 1 + 249844 252895 . 2 43,2809 0,243 -chrVII 249844 252903 HC_gene_3009_tx_4 1 + 249844 252903 . 2 43,2817 0,243 -chrVII 249844 252906 HC_gene_3009_tx_5 1 + 249844 252906 . 2 43,2820 0,243 -chrVII 249844 252911 HC_gene_3009_tx_6 1 + 249844 252911 . 2 43,2825 0,243 -chrVII 249844 252925 HC_gene_3009_tx_7 1 + 249844 252925 . 3 43,1700,1053 0,243,2029 -chrVII 249844 252928 HC_gene_3009_tx_8 1 + 249844 252928 . 2 43,2842 0,243 -chrVII 249844 252928 HC_gene_3009_tx_9 1 + 249844 252928 . 1 3085 0 -chrVII 249844 252933 HC_gene_3009_tx_10 1 + 249844 252933 . 2 43,2847 0,243 -chrVII 249844 252937 HC_gene_3009_tx_11 1 + 249844 252937 . 2 43,2851 0,243 -chrVII 249844 252966 HC_gene_3009_tx_12 1 + 249844 252966 . 2 43,2880 0,243 -chrVII 249844 252971 HC_gene_3009_tx_13 1 + 249844 252971 . 2 43,2885 0,243 -chrVII 249844 252974 HC_gene_3009_tx_14 1 + 249844 252974 . 2 43,2888 0,243 -chrVII 249844 253006 HC_gene_3009_tx_15 1 + 249844 253006 . 2 43,2920 0,243 -chrVII 249844 253018 HC_gene_3009_tx_16 1 + 249844 253018 . 2 43,2932 0,243 -chrVII 249844 253032 HC_gene_3009_tx_17 1 + 249844 253032 . 2 43,2946 0,243 -chrVII 249844 253103 HC_gene_3009_tx_18 1 + 249844 253103 . 1 3260 0 -chrVII 249844 253103 HC_gene_3009_tx_19 1 + 249844 253103 . 2 43,3017 0,243 -chrVII 250150 252910 HC_gene_3009_tx_20 1 + 250150 252910 . 1 2761 0 -chrVII 250150 252971 HC_gene_3009_tx_21 1 + 250150 252971 . 1 2822 0 -chrVII 250287 252862 HC_gene_3009_tx_22 1 + 250287 252862 . 2 1438,957 0,1619 -chrVII 250287 252867 HC_gene_3009_tx_23 1 + 250287 252867 . 1 2581 0 -chrVII 250287 252899 HC_gene_3009_tx_24 1 + 250287 252899 . 1 2613 0 -chrVII 250287 252901 HC_gene_3009_tx_25 1 + 250287 252901 . 1 2615 0 -chrVII 250287 252921 HC_gene_3009_tx_26 1 + 250287 252921 . 1 2635 0 -chrVII 250287 252971 HC_gene_3009_tx_27 1 + 250287 252971 . 2 346,1861 0,824 -chrVII 250287 252978 HC_gene_3009_tx_28 1 + 250287 252978 . 1 2692 0 -chrVII 250481 252867 HC_gene_3009_tx_29 1 + 250481 252867 . 1 2387 0 -chrVII 250481 252925 HC_gene_3009_tx_30 1 + 250481 252925 . 2 633,1709 0,736 -chrVII 250547 252877 HC_gene_3009_tx_31 1 + 250547 252877 . 1 2331 0 -chrVII 251304 252242 LC_gene_3447_tx_1 1 - 251304 252242 . 1 939 0 -chrVII 251641 252862 HC_gene_3010_tx_1 1 + 251641 252862 . 1 1222 0 -chrVII 251641 252890 HC_gene_3010_tx_2 1 + 251641 252890 . 1 1250 0 -chrVII 251641 252906 HC_gene_3010_tx_3 1 + 251641 252906 . 1 1266 0 -chrVII 251641 252928 HC_gene_3010_tx_4 1 + 251641 252928 . 1 1288 0 -chrVII 251641 252936 HC_gene_3010_tx_5 1 + 251641 252936 . 1 1296 0 -chrVII 251641 252938 HC_gene_3010_tx_6 1 + 251641 252938 . 1 1298 0 -chrVII 251641 252962 HC_gene_3010_tx_7 1 + 251641 252962 . 1 1322 0 -chrVII 251641 252971 HC_gene_3010_tx_8 1 + 251641 252971 . 1 1331 0 -chrVII 251641 253159 HC_gene_3010_tx_9 1 + 251641 253159 . 1 1519 0 -chrVII 251950 252869 HC_gene_3010_tx_10 1 + 251950 252869 . 1 920 0 -chrVII 251950 252873 HC_gene_3010_tx_11 1 + 251950 252873 . 1 924 0 -chrVII 251950 252892 HC_gene_3010_tx_12 1 + 251950 252892 . 1 943 0 -chrVII 251950 252896 HC_gene_3010_tx_13 1 + 251950 252896 . 1 947 0 -chrVII 251950 252922 HC_gene_3010_tx_14 1 + 251950 252922 . 1 973 0 -chrVII 251950 252923 HC_gene_3010_tx_15 1 + 251950 252923 . 1 974 0 -chrVII 251950 252926 HC_gene_3010_tx_16 1 + 251950 252926 . 1 977 0 -chrVII 251950 252928 HC_gene_3010_tx_17 1 + 251950 252928 . 1 979 0 -chrVII 251950 252971 HC_gene_3010_tx_18 1 + 251950 252971 . 1 1022 0 -chrVII 251950 252973 HC_gene_3010_tx_19 1 + 251950 252973 . 1 1024 0 -chrVII 251950 253027 HC_gene_3010_tx_20 1 + 251950 253027 . 1 1078 0 -chrVII 252131 252867 HC_gene_3010_tx_21 1 + 252131 252867 . 1 737 0 -chrVII 252131 252906 HC_gene_3010_tx_22 3 + 252131 252906 . 1 776 0 -chrVII 252131 252910 HC_gene_3010_tx_23 1 + 252131 252910 . 1 780 0 -chrVII 252131 252924 HC_gene_3010_tx_24 1 + 252131 252924 . 1 794 0 -chrVII 252131 252930 HC_gene_3010_tx_25 1 + 252131 252930 . 1 800 0 -chrVII 252131 252971 HC_gene_3010_tx_26 2 + 252131 252971 . 1 841 0 -chrVII 252131 252976 HC_gene_3010_tx_27 1 + 252131 252976 . 1 846 0 -chrVII 252131 253032 HC_gene_3010_tx_28 1 + 252131 253032 . 1 902 0 -chrVII 252131 253089 HC_gene_3010_tx_29 2 + 252131 253089 . 1 959 0 -chrVII 252131 253103 HC_gene_3010_tx_30 1 + 252131 253103 . 1 973 0 -chrVII 252277 252843 HC_gene_3010_tx_31 1 + 252277 252843 . 1 567 0 -chrVII 252277 252847 HC_gene_3010_tx_32 1 + 252277 252847 . 1 571 0 -chrVII 252277 252848 HC_gene_3010_tx_33 1 + 252277 252848 . 1 572 0 -chrVII 252277 252857 HC_gene_3010_tx_34 1 + 252277 252857 . 1 581 0 -chrVII 252277 252859 HC_gene_3010_tx_35 2 + 252277 252859 . 1 583 0 -chrVII 252277 252862 HC_gene_3010_tx_36 1 + 252277 252862 . 1 586 0 -chrVII 252277 252882 HC_gene_3010_tx_37 1 + 252277 252882 . 1 606 0 -chrVII 252277 252891 HC_gene_3010_tx_38 1 + 252277 252891 . 1 615 0 -chrVII 252277 252904 HC_gene_3010_tx_39 1 + 252277 252904 . 1 628 0 -chrVII 252277 252906 HC_gene_3010_tx_40 1 + 252277 252906 . 1 630 0 -chrVII 252277 252911 HC_gene_3010_tx_41 1 + 252277 252911 . 1 635 0 -chrVII 252277 252921 HC_gene_3010_tx_42 1 + 252277 252921 . 1 645 0 -chrVII 252277 252926 HC_gene_3010_tx_43 1 + 252277 252926 . 1 650 0 -chrVII 252277 252929 HC_gene_3010_tx_44 1 + 252277 252929 . 1 653 0 -chrVII 252277 252963 HC_gene_3010_tx_45 1 + 252277 252963 . 1 687 0 -chrVII 252277 252971 HC_gene_3010_tx_46 1 + 252277 252971 . 1 695 0 -chrVII 252277 253029 HC_gene_3010_tx_47 1 + 252277 253029 . 1 753 0 -chrVII 252277 253100 HC_gene_3010_tx_48 1 + 252277 253100 . 1 824 0 -chrVII 252277 253101 HC_gene_3010_tx_49 1 + 252277 253101 . 1 825 0 -chrVII 252277 253148 HC_gene_3010_tx_50 1 + 252277 253148 . 1 872 0 -chrVII 252331 252874 HC_gene_3010_tx_51 1 + 252331 252874 . 1 544 0 -chrVII 252331 252875 HC_gene_3010_tx_52 1 + 252331 252875 . 1 545 0 -chrVII 252331 252878 HC_gene_3010_tx_53 1 + 252331 252878 . 1 548 0 -chrVII 252331 252882 HC_gene_3010_tx_54 1 + 252331 252882 . 1 552 0 -chrVII 252331 252890 HC_gene_3010_tx_55 2 + 252331 252890 . 1 560 0 -chrVII 252331 252897 HC_gene_3010_tx_56 1 + 252331 252897 . 2 184,297 0,270 -chrVII 252331 252906 HC_gene_3010_tx_57 1 + 252331 252906 . 1 576 0 -chrVII 252331 252922 HC_gene_3010_tx_58 1 + 252331 252922 . 1 592 0 -chrVII 252331 252923 HC_gene_3010_tx_59 1 + 252331 252923 . 1 593 0 -chrVII 252331 252928 HC_gene_3010_tx_60 1 + 252331 252928 . 1 598 0 -chrVII 252331 252933 HC_gene_3010_tx_61 1 + 252331 252933 . 1 603 0 -chrVII 252331 252968 HC_gene_3010_tx_62 1 + 252331 252968 . 1 638 0 -chrVII 252331 253024 HC_gene_3010_tx_63 1 + 252331 253024 . 1 694 0 -chrVII 252331 253029 HC_gene_3010_tx_64 1 + 252331 253029 . 1 699 0 -chrVII 252331 253097 HC_gene_3010_tx_65 1 + 252331 253097 . 1 767 0 -chrVII 252491 252858 HC_gene_3010_tx_66 2 + 252491 252858 . 1 368 0 -chrVII 252491 252874 HC_gene_3010_tx_67 2 + 252491 252874 . 1 384 0 -chrVII 252491 252877 HC_gene_3010_tx_68 1 + 252491 252877 . 1 387 0 -chrVII 252491 252880 HC_gene_3010_tx_69 1 + 252491 252880 . 1 390 0 -chrVII 252491 252882 HC_gene_3010_tx_70 1 + 252491 252882 . 1 392 0 -chrVII 252491 252887 HC_gene_3010_tx_71 2 + 252491 252887 . 1 397 0 -chrVII 252491 252890 HC_gene_3010_tx_72 2 + 252491 252890 . 1 400 0 -chrVII 252491 252892 HC_gene_3010_tx_73 1 + 252491 252892 . 1 402 0 -chrVII 252491 252893 HC_gene_3010_tx_74 1 + 252491 252893 . 1 403 0 -chrVII 252491 252903 HC_gene_3010_tx_75 1 + 252491 252903 . 1 413 0 -chrVII 252491 252906 HC_gene_3010_tx_76 2 + 252491 252906 . 1 416 0 -chrVII 252491 252921 HC_gene_3010_tx_77 1 + 252491 252921 . 1 431 0 -chrVII 252491 252924 HC_gene_3010_tx_78 1 + 252491 252924 . 1 434 0 -chrVII 252491 252925 HC_gene_3010_tx_79 1 + 252491 252925 . 1 435 0 -chrVII 252491 252930 HC_gene_3010_tx_80 2 + 252491 252930 . 1 440 0 -chrVII 252491 252933 HC_gene_3010_tx_81 2 + 252491 252933 . 1 443 0 -chrVII 252491 252966 HC_gene_3010_tx_82 1 + 252491 252966 . 1 476 0 -chrVII 252491 252971 HC_gene_3010_tx_83 2 + 252491 252971 . 1 481 0 -chrVII 252491 252972 HC_gene_3010_tx_84 1 + 252491 252972 . 1 482 0 -chrVII 252491 253017 HC_gene_3010_tx_85 1 + 252491 253017 . 1 527 0 -chrVII 252491 253100 HC_gene_3010_tx_86 1 + 252491 253100 . 1 610 0 -chrVII 252491 253113 HC_gene_3010_tx_87 1 + 252491 253113 . 1 623 0 -chrVII 252491 253116 HC_gene_3010_tx_88 1 + 252491 253116 . 1 626 0 -chrVII 252491 253128 HC_gene_3010_tx_89 1 + 252491 253128 . 1 638 0 -chrVII 252770 253915 HC_gene_3448_tx_1 17 - 252770 253915 . 1 1146 0 -chrVII 252770 253915 HC_gene_3448_tx_2 7 - 252770 253915 . 2 416,667 0,479 -chrVII 252770 253994 HC_gene_3448_tx_3 1 - 252770 253994 . 1 1225 0 -chrVII 254576 255388 HC_gene_3011_tx_1 2096 + 254576 255388 . 1 813 0 -chrVII 254749 255388 HC_gene_3011_tx_2 268 + 254749 255388 . 1 640 0 -chrVII 254965 255388 HC_gene_3011_tx_3 204 + 254965 255388 . 1 424 0 -chrVII 255279 255980 LC_gene_3449_tx_1 1 - 255279 255980 . 1 702 0 -chrVII 255565 257022 HC_gene_3012_tx_1 25 + 255565 257022 . 1 1458 0 -chrVII 256021 257022 HC_gene_3012_tx_2 4 + 256021 257022 . 1 1002 0 -chrVII 256871 257275 MC_gene_3450_tx_1 1 - 256871 257275 . 1 405 0 -chrVII 257506 261574 HC_gene_3013_tx_1 5 + 257506 261574 . 1 4069 0 -chrVII 257506 261574 HC_gene_3013_tx_2 1 + 257506 261574 . 2 3097,906 0,3163 -chrVII 257506 261574 HC_gene_3013_tx_3 1 + 257506 261574 . 2 262,3645 0,424 -chrVII 258420 261574 HC_gene_3013_tx_4 1 + 258420 261574 . 1 3155 0 -chrVII 258420 261574 HC_gene_3013_tx_5 1 + 258420 261574 . 2 2144,965 0,2190 -chrVII 258593 261574 HC_gene_3013_tx_6 1 + 258593 261574 . 2 1105,1819 0,1163 -chrVII 259106 261574 HC_gene_3013_tx_7 1 + 259106 261574 . 1 2469 0 -chrVII 259496 260663 HC_gene_3013_tx_9 1 + 259496 260663 . 1 1168 0 -chrVII 259496 261574 HC_gene_3013_tx_8 3 + 259496 261574 . 1 2079 0 -chrVII 260541 261773 MC_gene_3451_tx_1 1 - 260541 261773 . 1 1233 0 -chrVII 260767 261574 HC_gene_3013_tx_10 5 + 260767 261574 . 1 808 0 -chrVII 260933 261574 HC_gene_3013_tx_11 9 + 260933 261574 . 1 642 0 -chrVII 260984 261574 HC_gene_3013_tx_12 1 + 260984 261574 . 1 591 0 -chrVII 261826 265920 HC_gene_3452_tx_1 1 - 261826 265920 . 2 2691,1352 0,2743 -chrVII 266063 266282 MC_gene_3453_tx_1 1 - 266063 266282 . 1 220 0 -chrVII 266102 267668 HC_gene_3014_tx_1 18 + 266102 267668 . 1 1567 0 -chrVII 266102 267668 HC_gene_3014_tx_2 1 + 266102 267668 . 2 938,453 0,1114 -chrVII 266370 267668 HC_gene_3014_tx_3 6 + 266370 267668 . 1 1299 0 -chrVII 266432 267668 HC_gene_3014_tx_4 1 + 266432 267668 . 1 1237 0 -chrVII 267228 267668 HC_gene_3014_tx_5 8 + 267228 267668 . 1 441 0 -chrVII 267521 268082 HC_gene_3454_tx_1 5 - 267521 268082 . 1 562 0 -chrVII 267521 269133 HC_gene_3454_tx_2 34 - 267521 269133 . 1 1613 0 -chrVII 267521 269133 HC_gene_3454_tx_3 1 - 267521 269133 . 2 992,176 0,1437 -chrVII 268943 269205 MC_gene_3015_tx_1 1 + 268943 269205 . 1 263 0 -chrVII 269101 270143 HC_gene_3455_tx_1 4 - 269101 270143 . 1 1043 0 -chrVII 269112 270143 HC_gene_3455_tx_2 1 - 269112 270143 . 1 1032 0 -chrVII 269113 270143 HC_gene_3455_tx_3 4 - 269113 270143 . 1 1031 0 -chrVII 269114 270126 HC_gene_3455_tx_4 2 - 269114 270126 . 1 1013 0 -chrVII 269114 270132 HC_gene_3455_tx_5 1 - 269114 270132 . 1 1019 0 -chrVII 269114 270145 HC_gene_3455_tx_6 1 - 269114 270145 . 1 1032 0 -chrVII 269115 270134 HC_gene_3455_tx_7 1 - 269115 270134 . 1 1020 0 -chrVII 269118 270129 HC_gene_3455_tx_8 1 - 269118 270129 . 1 1012 0 -chrVII 269125 270116 HC_gene_3455_tx_9 1 - 269125 270116 . 1 992 0 -chrVII 269125 270117 HC_gene_3455_tx_10 1 - 269125 270117 . 1 993 0 -chrVII 269251 270370 HC_gene_3016_tx_1 2 + 269251 270370 . 1 1120 0 -chrVII 269888 270370 HC_gene_3016_tx_2 2 + 269888 270370 . 1 483 0 -chrVII 270245 270522 HC_gene_3456_tx_1 4 - 270245 270522 . 1 278 0 -chrVII 270245 270582 HC_gene_3456_tx_2 4 - 270245 270582 . 1 338 0 -chrVII 270245 270750 HC_gene_3456_tx_3 81 - 270245 270750 . 1 506 0 -chrVII 270245 270750 HC_gene_3456_tx_4 1 - 270245 270750 . 2 47,416 0,90 -chrVII 270245 270750 HC_gene_3456_tx_5 1 - 270245 270750 . 2 221,196 0,310 -chrVII 270245 271117 HC_gene_3456_tx_6 1 - 270245 271117 . 1 873 0 -chrVII 270936 272397 HC_gene_3017_tx_1 1 + 270936 272397 . 1 1462 0 -chrVII 270944 272397 HC_gene_3017_tx_2 1 + 270944 272397 . 1 1454 0 -chrVII 270945 272397 HC_gene_3017_tx_3 1 + 270945 272397 . 1 1453 0 -chrVII 270947 272397 HC_gene_3017_tx_4 1 + 270947 272397 . 1 1451 0 -chrVII 270948 272397 HC_gene_3017_tx_5 2 + 270948 272397 . 1 1450 0 -chrVII 270950 272397 HC_gene_3017_tx_6 1 + 270950 272397 . 1 1448 0 -chrVII 270958 272397 HC_gene_3017_tx_7 1 + 270958 272397 . 1 1440 0 -chrVII 270961 272397 HC_gene_3017_tx_8 1 + 270961 272397 . 1 1437 0 -chrVII 270962 272397 HC_gene_3017_tx_9 1 + 270962 272397 . 1 1436 0 -chrVII 270964 272397 HC_gene_3017_tx_10 1 + 270964 272397 . 1 1434 0 -chrVII 270969 272397 HC_gene_3017_tx_11 14 + 270969 272397 . 1 1429 0 -chrVII 270973 272397 HC_gene_3017_tx_12 1 + 270973 272397 . 1 1425 0 -chrVII 270987 272397 HC_gene_3017_tx_13 3 + 270987 272397 . 1 1411 0 -chrVII 270988 272397 HC_gene_3017_tx_14 1 + 270988 272397 . 1 1410 0 -chrVII 270989 272397 HC_gene_3017_tx_15 2 + 270989 272397 . 1 1409 0 -chrVII 271035 272397 HC_gene_3017_tx_16 1 + 271035 272397 . 1 1363 0 -chrVII 271062 272397 HC_gene_3017_tx_17 1 + 271062 272397 . 1 1336 0 -chrVII 271209 272397 HC_gene_3017_tx_18 2 + 271209 272397 . 1 1189 0 -chrVII 271307 272397 HC_gene_3017_tx_19 2 + 271307 272397 . 1 1091 0 -chrVII 271429 272397 HC_gene_3017_tx_20 3 + 271429 272397 . 1 969 0 -chrVII 271622 272397 HC_gene_3017_tx_21 1 + 271622 272397 . 1 776 0 -chrVII 271629 272397 HC_gene_3017_tx_22 2 + 271629 272397 . 1 769 0 -chrVII 271630 272397 HC_gene_3017_tx_23 1 + 271630 272397 . 1 768 0 -chrVII 271634 272397 HC_gene_3017_tx_24 2 + 271634 272397 . 1 764 0 -chrVII 271640 272397 HC_gene_3017_tx_25 1 + 271640 272397 . 1 758 0 -chrVII 271642 272397 HC_gene_3017_tx_26 1 + 271642 272397 . 1 756 0 -chrVII 271643 272397 HC_gene_3017_tx_27 1 + 271643 272397 . 1 755 0 -chrVII 271645 272397 HC_gene_3017_tx_28 2 + 271645 272397 . 1 753 0 -chrVII 271650 272397 HC_gene_3017_tx_29 1 + 271650 272397 . 1 748 0 -chrVII 271651 272397 HC_gene_3017_tx_30 13 + 271651 272397 . 1 747 0 -chrVII 271665 272397 HC_gene_3017_tx_31 2 + 271665 272397 . 1 733 0 -chrVII 271667 272397 HC_gene_3017_tx_32 1 + 271667 272397 . 1 731 0 -chrVII 271673 272397 HC_gene_3017_tx_33 2 + 271673 272397 . 1 725 0 -chrVII 271674 272397 HC_gene_3017_tx_34 1 + 271674 272397 . 1 724 0 -chrVII 271678 272397 HC_gene_3017_tx_35 1 + 271678 272397 . 1 720 0 -chrVII 271796 272397 HC_gene_3017_tx_36 6 + 271796 272397 . 1 602 0 -chrVII 272202 272897 HC_gene_3457_tx_1 5 - 272202 272897 . 1 696 0 -chrVII 272377 274618 HC_gene_3018_tx_1 1 + 272377 274618 . 2 511,1631 0,611 -chrVII 272377 274778 HC_gene_3018_tx_2 9 + 272377 274778 . 1 2402 0 -chrVII 273101 274778 HC_gene_3018_tx_3 1 + 273101 274778 . 1 1678 0 -chrVII 273263 274778 HC_gene_3018_tx_4 7 + 273263 274778 . 1 1516 0 -chrVII 274152 274618 HC_gene_3018_tx_5 3 + 274152 274618 . 1 467 0 -chrVII 274152 274778 HC_gene_3018_tx_7 6 + 274152 274778 . 1 627 0 -chrVII 274241 274618 HC_gene_3018_tx_6 3 + 274241 274618 . 1 378 0 -chrVII 274241 274778 HC_gene_3018_tx_8 2 + 274241 274778 . 1 538 0 -chrVII 274656 275652 HC_gene_3458_tx_1 4 - 274656 275652 . 1 997 0 -chrVII 274656 276392 HC_gene_3458_tx_2 9 - 274656 276392 . 1 1737 0 -chrVII 274656 276750 HC_gene_3458_tx_3 6 - 274656 276750 . 1 2095 0 -chrVII 274656 276750 HC_gene_3458_tx_4 1 - 274656 276750 . 2 886,1129 0,966 -chrVII 275467 276781 MC_gene_3019_tx_1 1 + 275467 276781 . 1 1315 0 -chrVII 276369 276912 MC_gene_3020_tx_1 1 + 276369 276912 . 1 544 0 -chrVII 277519 278472 HC_gene_3021_tx_1 4639 + 277519 278472 . 1 954 0 -chrVII 277917 278472 HC_gene_3021_tx_2 456 + 277917 278472 . 1 556 0 -chrVII 278041 278472 HC_gene_3021_tx_3 533 + 278041 278472 . 1 432 0 -chrVII 278550 279744 HC_gene_3459_tx_1 1 - 278550 279744 . 1 1195 0 -chrVII 278550 280539 HC_gene_3459_tx_2 2 - 278550 280539 . 1 1990 0 -chrVII 280597 280921 HC_gene_3460_tx_1 2 - 280597 280921 . 1 325 0 -chrVII 280597 281137 HC_gene_3460_tx_2 34 - 280597 281137 . 1 541 0 -chrVII 280778 281248 HC_gene_3022_tx_1 5 + 280778 281248 . 1 471 0 -chrVII 281390 283783 HC_gene_3461_tx_1 1 - 281390 283783 . 1 2394 0 -chrVII 281465 281860 HC_gene_3461_tx_6 1 - 281465 281860 . 1 396 0 -chrVII 281465 283783 HC_gene_3461_tx_2 1 - 281465 283783 . 1 2319 0 -chrVII 281465 283994 HC_gene_3461_tx_3 5 - 281465 283994 . 1 2530 0 -chrVII 281517 281860 HC_gene_3461_tx_7 14 - 281517 281860 . 1 344 0 -chrVII 281517 281939 HC_gene_3461_tx_8 9 - 281517 281939 . 1 423 0 -chrVII 281517 282830 HC_gene_3461_tx_9 7 - 281517 282830 . 1 1314 0 -chrVII 281517 283783 HC_gene_3461_tx_4 8 - 281517 283783 . 1 2267 0 -chrVII 281517 283994 HC_gene_3461_tx_5 26 - 281517 283994 . 1 2478 0 -chrVII 284423 285873 HC_gene_3023_tx_1 1 + 284423 285873 . 1 1451 0 -chrVII 284423 286038 HC_gene_3023_tx_2 1 + 284423 286038 . 1 1616 0 -chrVII 284423 286041 HC_gene_3023_tx_3 1 + 284423 286041 . 1 1619 0 -chrVII 284423 286234 HC_gene_3023_tx_4 1 + 284423 286234 . 1 1812 0 -chrVII 286086 287104 HC_gene_3462_tx_1 5 - 286086 287104 . 1 1019 0 -chrVII 286137 287154 HC_gene_3024_tx_1 1 + 286137 287154 . 1 1018 0 -chrVII 286276 287104 HC_gene_3462_tx_2 3 - 286276 287104 . 1 829 0 -chrVII 286334 287104 HC_gene_3462_tx_3 1 - 286334 287104 . 1 771 0 -chrVII 287250 287444 LC_gene_3463_tx_1 1 - 287250 287444 . 1 195 0 -chrVII 288334 289291 LC_gene_3464_tx_1 1 - 288334 289291 . 1 958 0 -chrVII 288430 289421 HC_gene_3025_tx_1 175 + 288430 289421 . 1 992 0 -chrVII 288430 289534 HC_gene_3025_tx_2 13 + 288430 289534 . 1 1105 0 -chrVII 289593 291742 HC_gene_3026_tx_1 2 + 289593 291742 . 1 2150 0 -chrVII 289667 291742 HC_gene_3026_tx_2 17 + 289667 291742 . 1 2076 0 -chrVII 289667 291742 HC_gene_3026_tx_3 1 + 289667 291742 . 2 1172,862 0,1214 -chrVII 291912 293083 HC_gene_3027_tx_1 100 + 291912 293083 . 1 1172 0 -chrVII 292086 293083 HC_gene_3027_tx_2 13 + 292086 293083 . 1 998 0 -chrVII 292600 293083 HC_gene_3027_tx_3 15 + 292600 293083 . 1 484 0 -chrVII 292814 293224 MC_gene_3465_tx_1 1 - 292814 293224 . 1 411 0 -chrVII 292999 293215 MC_gene_3465_tx_2 1 - 292999 293215 . 1 217 0 -chrVII 293217 295706 HC_gene_3028_tx_1 13 + 293217 295706 . 1 2490 0 -chrVII 293217 295706 HC_gene_3028_tx_2 1 + 293217 295706 . 2 1262,1150 0,1340 -chrVII 293217 295706 HC_gene_3028_tx_3 1 + 293217 295706 . 2 1300,1054 0,1436 -chrVII 293217 295706 HC_gene_3028_tx_4 1 + 293217 295706 . 2 717,1712 0,778 -chrVII 293217 295706 HC_gene_3028_tx_5 1 + 293217 295706 . 2 1887,558 0,1932 -chrVII 293442 295706 HC_gene_3028_tx_6 5 + 293442 295706 . 1 2265 0 -chrVII 295843 298192 HC_gene_3029_tx_1 10 + 295843 298192 . 1 2350 0 -chrVII 296869 298192 HC_gene_3029_tx_2 2 + 296869 298192 . 1 1324 0 -chrVII 298045 298535 HC_gene_3466_tx_1 22 - 298045 298535 . 1 491 0 -chrVII 298045 299420 HC_gene_3466_tx_2 5 - 298045 299420 . 1 1376 0 -chrVII 298045 299764 HC_gene_3466_tx_3 34 - 298045 299764 . 1 1720 0 -chrVII 298045 299764 HC_gene_3466_tx_4 1 - 298045 299764 . 2 773,845 0,875 -chrVII 299956 301566 HC_gene_3030_tx_1 56 + 299956 301566 . 1 1611 0 -chrVII 299956 301566 HC_gene_3030_tx_2 1 + 299956 301566 . 2 844,697 0,914 -chrVII 299956 301566 HC_gene_3030_tx_3 1 + 299956 301566 . 2 757,667 0,944 -chrVII 299956 301566 HC_gene_3030_tx_4 1 + 299956 301566 . 2 1276,285 0,1326 -chrVII 299956 301566 HC_gene_3030_tx_5 1 + 299956 301566 . 2 856,697 0,914 -chrVII 299956 301698 HC_gene_3030_tx_6 3 + 299956 301698 . 1 1743 0 -chrVII 300500 301537 MC_gene_3467_tx_1 1 - 300500 301537 . 1 1038 0 -chrVII 300534 301566 HC_gene_3030_tx_7 6 + 300534 301566 . 1 1033 0 -chrVII 300534 301566 HC_gene_3030_tx_8 1 + 300534 301566 . 2 652,216 0,817 -chrVII 300534 301566 HC_gene_3030_tx_9 1 + 300534 301566 . 2 925,65 0,968 -chrVII 300534 301698 HC_gene_3030_tx_10 1 + 300534 301698 . 1 1165 0 -chrVII 300940 301566 HC_gene_3030_tx_11 13 + 300940 301566 . 1 627 0 -chrVII 300940 301698 HC_gene_3030_tx_12 3 + 300940 301698 . 1 759 0 -chrVII 301440 301765 HC_gene_3468_tx_1 5 - 301440 301765 . 1 326 0 -chrVII 301440 301846 HC_gene_3468_tx_2 7 - 301440 301846 . 1 407 0 -chrVII 301440 302183 HC_gene_3468_tx_3 8 - 301440 302183 . 1 744 0 -chrVII 301440 302523 HC_gene_3468_tx_4 5 - 301440 302523 . 1 1084 0 -chrVII 301440 303435 HC_gene_3468_tx_5 1 - 301440 303435 . 2 794,1159 0,837 -chrVII 301440 303435 HC_gene_3468_tx_6 15 - 301440 303435 . 1 1996 0 -chrVII 301440 303435 HC_gene_3468_tx_7 1 - 301440 303435 . 2 719,961 0,1035 -chrVII 301440 304109 HC_gene_3468_tx_8 3 - 301440 304109 . 1 2670 0 -chrVII 303187 304109 HC_gene_3468_tx_9 3 - 303187 304109 . 1 923 0 -chrVII 303476 304096 HC_gene_3468_tx_10 1 - 303476 304096 . 1 621 0 -chrVII 303476 304106 HC_gene_3468_tx_11 1 - 303476 304106 . 1 631 0 -chrVII 303476 304109 HC_gene_3468_tx_12 47 - 303476 304109 . 1 634 0 -chrVII 303616 303942 LC_gene_3031_tx_1 1 + 303616 303942 . 1 327 0 -chrVII 304176 304866 LC_gene_3032_tx_1 1 + 304176 304866 . 1 691 0 -chrVII 304235 306104 HC_gene_3469_tx_1 5 - 304235 306104 . 1 1870 0 -chrVII 304235 306333 HC_gene_3469_tx_2 15 - 304235 306333 . 1 2099 0 -chrVII 304235 306333 HC_gene_3469_tx_3 1 - 304235 306333 . 2 849,1150 0,949 -chrVII 304235 306333 HC_gene_3469_tx_4 1 - 304235 306333 . 2 910,1150 0,949 -chrVII 304235 306333 HC_gene_3469_tx_5 1 - 304235 306333 . 2 943,1082 0,1017 -chrVII 306531 307146 HC_gene_3033_tx_1 180 + 306531 307146 . 1 616 0 -chrVII 306531 307146 HC_gene_3033_tx_2 1 + 306531 307146 . 2 133,393 0,223 -chrVII 306531 307146 HC_gene_3033_tx_3 1 + 306531 307146 . 2 119,393 0,223 -chrVII 306531 307264 HC_gene_3033_tx_4 325 + 306531 307264 . 1 734 0 -chrVII 306531 307264 HC_gene_3033_tx_5 1 + 306531 307264 . 2 541,53 0,681 -chrVII 306531 307264 HC_gene_3033_tx_6 6 + 306531 307264 . 2 622,53 0,681 -chrVII 306531 307264 HC_gene_3033_tx_7 1 + 306531 307264 . 2 642,41 0,693 -chrVII 306531 307264 HC_gene_3033_tx_8 1 + 306531 307264 . 2 596,53 0,681 -chrVII 306531 307264 HC_gene_3033_tx_9 4 + 306531 307264 . 2 618,53 0,681 -chrVII 306531 307264 HC_gene_3033_tx_10 1 + 306531 307264 . 2 356,288 0,446 -chrVII 306531 307264 HC_gene_3033_tx_11 1 + 306531 307264 . 2 640,53 0,681 -chrVII 306531 307264 HC_gene_3033_tx_12 1 + 306531 307264 . 2 318,338 0,396 -chrVII 306779 307146 HC_gene_3033_tx_13 16 + 306779 307146 . 1 368 0 -chrVII 306779 307146 HC_gene_3033_tx_14 1 + 306779 307146 . 2 263,58 0,310 -chrVII 306779 307264 HC_gene_3033_tx_15 37 + 306779 307264 . 1 486 0 -chrVII 306779 307264 HC_gene_3033_tx_16 1 + 306779 307264 . 2 374,53 0,433 -chrVII 306902 307146 HC_gene_3033_tx_17 5 + 306902 307146 . 1 245 0 -chrVII 306902 307264 HC_gene_3033_tx_18 53 + 306902 307264 . 1 363 0 -chrVII 307413 308692 HC_gene_3034_tx_1 340 + 307413 308692 . 1 1280 0 -chrVII 307413 308692 HC_gene_3034_tx_2 1 + 307413 308692 . 2 22,944 0,336 -chrVII 307413 308692 HC_gene_3034_tx_3 1 + 307413 308692 . 2 1102,121 0,1159 -chrVII 307413 308692 HC_gene_3034_tx_4 1 + 307413 308692 . 2 128,1012 0,268 -chrVII 307413 308692 HC_gene_3034_tx_5 1 + 307413 308692 . 2 157,1059 0,221 -chrVII 307413 308692 HC_gene_3034_tx_6 1 + 307413 308692 . 2 514,706 0,574 -chrVII 307413 308692 HC_gene_3034_tx_7 1 + 307413 308692 . 2 768,445 0,835 -chrVII 307413 308692 HC_gene_3034_tx_8 1 + 307413 308692 . 2 1141,77 0,1203 -chrVII 307413 308692 HC_gene_3034_tx_9 1 + 307413 308692 . 2 439,713 0,567 -chrVII 307429 308692 HC_gene_3034_tx_10 1 + 307429 308692 . 2 262,676 0,588 -chrVII 307629 308692 HC_gene_3034_tx_11 1 + 307629 308692 . 2 46,978 0,86 -chrVII 307674 308692 HC_gene_3034_tx_12 110 + 307674 308692 . 1 1019 0 -chrVII 307968 308692 HC_gene_3034_tx_13 198 + 307968 308692 . 1 725 0 -chrVII 307968 308692 HC_gene_3034_tx_14 1 + 307968 308692 . 2 205,420 0,305 -chrVII 308575 310189 HC_gene_3470_tx_1 20 - 308575 310189 . 1 1615 0 -chrVII 308575 310518 HC_gene_3470_tx_2 1 - 308575 310518 . 1 1944 0 -chrVII 308990 309477 LC_gene_3035_tx_1 1 + 308990 309477 . 1 488 0 -chrVII 310950 311998 HC_gene_3036_tx_1 45 + 310950 311998 . 2 66,472 0,577 -chrVII 310950 311998 HC_gene_3036_tx_2 2 + 310950 311998 . 2 70,472 0,577 -chrVII 310950 311998 HC_gene_3036_tx_3 8 + 310950 311998 . 1 1049 0 -chrVII 310950 311998 HC_gene_3036_tx_4 1 + 310950 311998 . 2 58,335 0,714 -chrVII 310950 311998 HC_gene_3036_tx_5 1 + 310950 311998 . 2 70,463 0,586 -chrVII 310950 311999 HC_gene_3036_tx_6 14 + 310950 311999 . 2 66,473 0,577 -chrVII 310950 311999 HC_gene_3036_tx_7 5 + 310950 311999 . 1 1050 0 -chrVII 310950 312000 HC_gene_3036_tx_8 23 + 310950 312000 . 2 66,474 0,577 -chrVII 310950 312000 HC_gene_3036_tx_9 8 + 310950 312000 . 1 1051 0 -chrVII 310950 312000 HC_gene_3036_tx_10 1 + 310950 312000 . 2 61,476 0,575 -chrVII 310950 312001 HC_gene_3036_tx_11 27 + 310950 312001 . 2 66,475 0,577 -chrVII 310950 312001 HC_gene_3036_tx_12 1 + 310950 312001 . 2 61,449 0,603 -chrVII 310950 312001 HC_gene_3036_tx_13 1 + 310950 312001 . 2 66,466 0,586 -chrVII 310950 312001 HC_gene_3036_tx_14 4 + 310950 312001 . 1 1052 0 -chrVII 310950 312001 HC_gene_3036_tx_15 1 + 310950 312001 . 2 70,475 0,577 -chrVII 310950 312002 HC_gene_3036_tx_16 12 + 310950 312002 . 2 66,476 0,577 -chrVII 310950 312002 HC_gene_3036_tx_17 3 + 310950 312002 . 1 1053 0 -chrVII 310950 312003 HC_gene_3036_tx_18 1 + 310950 312003 . 2 66,477 0,577 -chrVII 310950 312004 HC_gene_3036_tx_19 1 + 310950 312004 . 2 66,478 0,577 -chrVII 310950 312005 HC_gene_3036_tx_20 1 + 310950 312005 . 1 1056 0 -chrVII 310950 312005 HC_gene_3036_tx_21 1 + 310950 312005 . 2 66,479 0,577 -chrVII 310950 312006 HC_gene_3036_tx_22 11 + 310950 312006 . 2 66,480 0,577 -chrVII 310950 312006 HC_gene_3036_tx_23 1 + 310950 312006 . 2 66,471 0,586 -chrVII 310950 312006 HC_gene_3036_tx_24 2 + 310950 312006 . 1 1057 0 -chrVII 310950 312006 HC_gene_3036_tx_25 1 + 310950 312006 . 2 59,480 0,577 -chrVII 310950 312007 HC_gene_3036_tx_26 24 + 310950 312007 . 2 66,481 0,577 -chrVII 310950 312007 HC_gene_3036_tx_27 6 + 310950 312007 . 1 1058 0 -chrVII 310950 312007 HC_gene_3036_tx_28 1 + 310950 312007 . 2 54,481 0,577 -chrVII 310950 312007 HC_gene_3036_tx_29 1 + 310950 312007 . 2 61,483 0,575 -chrVII 310950 312008 HC_gene_3036_tx_30 39 + 310950 312008 . 2 66,482 0,577 -chrVII 310950 312008 HC_gene_3036_tx_31 9 + 310950 312008 . 1 1059 0 -chrVII 310950 312008 HC_gene_3036_tx_32 1 + 310950 312008 . 2 59,482 0,577 -chrVII 310950 312009 HC_gene_3036_tx_33 119 + 310950 312009 . 2 66,483 0,577 -chrVII 310950 312009 HC_gene_3036_tx_34 19 + 310950 312009 . 1 1060 0 -chrVII 310950 312009 HC_gene_3036_tx_35 4 + 310950 312009 . 2 59,483 0,577 -chrVII 310950 312009 HC_gene_3036_tx_36 1 + 310950 312009 . 2 66,474 0,586 -chrVII 310950 312009 HC_gene_3036_tx_37 2 + 310950 312009 . 2 70,483 0,577 -chrVII 310950 312009 HC_gene_3036_tx_38 1 + 310950 312009 . 2 70,455 0,605 -chrVII 310950 312009 HC_gene_3036_tx_39 1 + 310950 312009 . 2 70,474 0,586 -chrVII 310950 312010 HC_gene_3036_tx_40 59 + 310950 312010 . 2 66,484 0,577 -chrVII 310950 312010 HC_gene_3036_tx_41 11 + 310950 312010 . 1 1061 0 -chrVII 310950 312010 HC_gene_3036_tx_42 1 + 310950 312010 . 2 61,486 0,575 -chrVII 310950 312010 HC_gene_3036_tx_43 3 + 310950 312010 . 2 70,484 0,577 -chrVII 310950 312011 HC_gene_3036_tx_44 168 + 310950 312011 . 2 66,485 0,577 -chrVII 310950 312011 HC_gene_3036_tx_45 28 + 310950 312011 . 1 1062 0 -chrVII 310950 312011 HC_gene_3036_tx_46 2 + 310950 312011 . 2 70,476 0,586 -chrVII 310950 312011 HC_gene_3036_tx_47 4 + 310950 312011 . 2 59,485 0,577 -chrVII 310950 312011 HC_gene_3036_tx_48 1 + 310950 312011 . 2 66,476 0,586 -chrVII 310950 312011 HC_gene_3036_tx_49 1 + 310950 312011 . 2 70,457 0,605 -chrVII 310950 312011 HC_gene_3036_tx_50 1 + 310950 312011 . 2 70,485 0,577 -chrVII 310950 312012 HC_gene_3036_tx_51 44 + 310950 312012 . 2 66,486 0,577 -chrVII 310950 312012 HC_gene_3036_tx_52 13 + 310950 312012 . 1 1063 0 -chrVII 310950 312012 HC_gene_3036_tx_53 1 + 310950 312012 . 2 70,477 0,586 -chrVII 310950 312012 HC_gene_3036_tx_54 1 + 310950 312012 . 2 59,486 0,577 -chrVII 310950 312013 HC_gene_3036_tx_55 44 + 310950 312013 . 2 66,487 0,577 -chrVII 310950 312013 HC_gene_3036_tx_56 1 + 310950 312013 . 2 59,487 0,577 -chrVII 310950 312013 HC_gene_3036_tx_57 1 + 310950 312013 . 2 39,489 0,575 -chrVII 310950 312013 HC_gene_3036_tx_58 8 + 310950 312013 . 1 1064 0 -chrVII 310950 312013 HC_gene_3036_tx_59 1 + 310950 312013 . 2 70,487 0,577 -chrVII 310950 312015 HC_gene_3036_tx_60 2 + 310950 312015 . 1 1066 0 -chrVII 310950 312015 HC_gene_3036_tx_61 1 + 310950 312015 . 2 54,489 0,577 -chrVII 310950 312015 HC_gene_3036_tx_62 1 + 310950 312015 . 2 66,489 0,577 -chrVII 310950 312016 HC_gene_3036_tx_63 1 + 310950 312016 . 2 66,490 0,577 -chrVII 310950 312017 HC_gene_3036_tx_64 5 + 310950 312017 . 2 66,491 0,577 -chrVII 310950 312017 HC_gene_3036_tx_65 2 + 310950 312017 . 1 1068 0 -chrVII 310950 312018 HC_gene_3036_tx_66 1 + 310950 312018 . 1 1069 0 -chrVII 310950 312018 HC_gene_3036_tx_67 4 + 310950 312018 . 2 66,492 0,577 -chrVII 310950 312021 HC_gene_3036_tx_68 2 + 310950 312021 . 2 66,495 0,577 -chrVII 310950 312021 HC_gene_3036_tx_69 2 + 310950 312021 . 1 1072 0 -chrVII 310950 312022 HC_gene_3036_tx_70 4 + 310950 312022 . 2 66,496 0,577 -chrVII 310950 312022 HC_gene_3036_tx_71 1 + 310950 312022 . 1 1073 0 -chrVII 310950 312023 HC_gene_3036_tx_72 2 + 310950 312023 . 1 1074 0 -chrVII 310950 312024 HC_gene_3036_tx_73 1 + 310950 312024 . 1 1075 0 -chrVII 310950 312024 HC_gene_3036_tx_74 2 + 310950 312024 . 2 66,498 0,577 -chrVII 310950 312025 HC_gene_3036_tx_75 1 + 310950 312025 . 2 66,499 0,577 -chrVII 310950 312025 HC_gene_3036_tx_76 3 + 310950 312025 . 1 1076 0 -chrVII 310950 312027 HC_gene_3036_tx_77 1 + 310950 312027 . 1 1078 0 -chrVII 310950 312030 HC_gene_3036_tx_78 1 + 310950 312030 . 2 66,504 0,577 -chrVII 310950 312033 HC_gene_3036_tx_79 1 + 310950 312033 . 1 1084 0 -chrVII 310950 312034 HC_gene_3036_tx_80 1 + 310950 312034 . 2 66,508 0,577 -chrVII 310950 312035 HC_gene_3036_tx_81 1 + 310950 312035 . 2 66,509 0,577 -chrVII 310950 312035 HC_gene_3036_tx_82 2 + 310950 312035 . 1 1086 0 -chrVII 310950 312037 HC_gene_3036_tx_83 3 + 310950 312037 . 1 1088 0 -chrVII 310950 312045 HC_gene_3036_tx_84 1 + 310950 312045 . 1 1096 0 -chrVII 310950 313092 HC_gene_3036_tx_85 2 + 310950 313092 . 1 2143 0 -chrVII 310950 313092 HC_gene_3036_tx_86 1 + 310950 313092 . 2 66,1566 0,577 -chrVII 311401 311998 HC_gene_3036_tx_87 1 + 311401 311998 . 1 598 0 -chrVII 311401 312001 HC_gene_3036_tx_88 1 + 311401 312001 . 1 601 0 -chrVII 311401 312003 HC_gene_3036_tx_89 1 + 311401 312003 . 1 603 0 -chrVII 311401 312009 HC_gene_3036_tx_90 1 + 311401 312009 . 1 609 0 -chrVII 311401 312010 HC_gene_3036_tx_91 2 + 311401 312010 . 1 610 0 -chrVII 311401 312011 HC_gene_3036_tx_92 5 + 311401 312011 . 1 611 0 -chrVII 311401 312013 HC_gene_3036_tx_93 1 + 311401 312013 . 1 613 0 -chrVII 311401 312023 HC_gene_3036_tx_94 1 + 311401 312023 . 1 623 0 -chrVII 311401 312029 HC_gene_3036_tx_95 1 + 311401 312029 . 1 629 0 -chrVII 311401 312035 HC_gene_3036_tx_96 2 + 311401 312035 . 1 635 0 -chrVII 311401 312044 HC_gene_3036_tx_97 1 + 311401 312044 . 1 644 0 -chrVII 311529 311998 HC_gene_3036_tx_98 171 + 311529 311998 . 1 470 0 -chrVII 311529 311999 HC_gene_3036_tx_99 40 + 311529 311999 . 1 471 0 -chrVII 311529 312000 HC_gene_3036_tx_100 64 + 311529 312000 . 1 472 0 -chrVII 311529 312001 HC_gene_3036_tx_101 99 + 311529 312001 . 1 473 0 -chrVII 311529 312001 HC_gene_3036_tx_102 1 + 311529 312001 . 2 80,328 0,145 -chrVII 311529 312002 HC_gene_3036_tx_103 52 + 311529 312002 . 1 474 0 -chrVII 311529 312003 HC_gene_3036_tx_104 9 + 311529 312003 . 1 475 0 -chrVII 311529 312004 HC_gene_3036_tx_105 5 + 311529 312004 . 1 476 0 -chrVII 311529 312005 HC_gene_3036_tx_106 4 + 311529 312005 . 1 477 0 -chrVII 311529 312006 HC_gene_3036_tx_107 41 + 311529 312006 . 1 478 0 -chrVII 311529 312007 HC_gene_3036_tx_108 79 + 311529 312007 . 1 479 0 -chrVII 311529 312008 HC_gene_3036_tx_109 128 + 311529 312008 . 1 480 0 -chrVII 311529 312009 HC_gene_3036_tx_110 370 + 311529 312009 . 1 481 0 -chrVII 311529 312010 HC_gene_3036_tx_111 178 + 311529 312010 . 1 482 0 -chrVII 311529 312011 HC_gene_3036_tx_112 593 + 311529 312011 . 1 483 0 -chrVII 311529 312012 HC_gene_3036_tx_113 153 + 311529 312012 . 1 484 0 -chrVII 311529 312013 HC_gene_3036_tx_114 163 + 311529 312013 . 1 485 0 -chrVII 311529 312014 HC_gene_3036_tx_115 1 + 311529 312014 . 1 486 0 -chrVII 311529 312015 HC_gene_3036_tx_116 8 + 311529 312015 . 1 487 0 -chrVII 311529 312016 HC_gene_3036_tx_117 3 + 311529 312016 . 1 488 0 -chrVII 311529 312017 HC_gene_3036_tx_118 10 + 311529 312017 . 1 489 0 -chrVII 311529 312018 HC_gene_3036_tx_119 17 + 311529 312018 . 1 490 0 -chrVII 311529 312018 HC_gene_3036_tx_120 1 + 311529 312018 . 2 207,191 0,299 -chrVII 311529 312019 HC_gene_3036_tx_121 1 + 311529 312019 . 1 491 0 -chrVII 311529 312020 HC_gene_3036_tx_122 2 + 311529 312020 . 1 492 0 -chrVII 311529 312022 HC_gene_3036_tx_123 8 + 311529 312022 . 1 494 0 -chrVII 311529 312023 HC_gene_3036_tx_124 10 + 311529 312023 . 1 495 0 -chrVII 311529 312024 HC_gene_3036_tx_125 3 + 311529 312024 . 1 496 0 -chrVII 311529 312025 HC_gene_3036_tx_126 10 + 311529 312025 . 1 497 0 -chrVII 311529 312026 HC_gene_3036_tx_127 1 + 311529 312026 . 1 498 0 -chrVII 311529 312027 HC_gene_3036_tx_128 1 + 311529 312027 . 1 499 0 -chrVII 311529 312028 HC_gene_3036_tx_129 2 + 311529 312028 . 1 500 0 -chrVII 311529 312029 HC_gene_3036_tx_130 3 + 311529 312029 . 1 501 0 -chrVII 311529 312030 HC_gene_3036_tx_131 2 + 311529 312030 . 1 502 0 -chrVII 311529 312032 HC_gene_3036_tx_132 2 + 311529 312032 . 1 504 0 -chrVII 311529 312033 HC_gene_3036_tx_133 1 + 311529 312033 . 1 505 0 -chrVII 311529 312034 HC_gene_3036_tx_134 9 + 311529 312034 . 1 506 0 -chrVII 311529 312035 HC_gene_3036_tx_135 3 + 311529 312035 . 1 507 0 -chrVII 311529 312036 HC_gene_3036_tx_136 5 + 311529 312036 . 1 508 0 -chrVII 311529 312046 HC_gene_3036_tx_137 1 + 311529 312046 . 1 518 0 -chrVII 311529 313092 HC_gene_3036_tx_138 4 + 311529 313092 . 1 1564 0 -chrVII 311715 311998 HC_gene_3036_tx_139 16 + 311715 311998 . 1 284 0 -chrVII 311715 311999 HC_gene_3036_tx_140 3 + 311715 311999 . 1 285 0 -chrVII 311715 312000 HC_gene_3036_tx_141 3 + 311715 312000 . 1 286 0 -chrVII 311715 312001 HC_gene_3036_tx_142 15 + 311715 312001 . 1 287 0 -chrVII 311715 312002 HC_gene_3036_tx_143 2 + 311715 312002 . 1 288 0 -chrVII 311715 312003 HC_gene_3036_tx_144 2 + 311715 312003 . 1 289 0 -chrVII 311715 312005 HC_gene_3036_tx_145 1 + 311715 312005 . 1 291 0 -chrVII 311715 312006 HC_gene_3036_tx_146 2 + 311715 312006 . 1 292 0 -chrVII 311715 312007 HC_gene_3036_tx_147 9 + 311715 312007 . 1 293 0 -chrVII 311715 312008 HC_gene_3036_tx_148 14 + 311715 312008 . 1 294 0 -chrVII 311715 312009 HC_gene_3036_tx_149 41 + 311715 312009 . 1 295 0 -chrVII 311715 312010 HC_gene_3036_tx_150 12 + 311715 312010 . 1 296 0 -chrVII 311715 312011 HC_gene_3036_tx_151 46 + 311715 312011 . 1 297 0 -chrVII 311715 312012 HC_gene_3036_tx_152 32 + 311715 312012 . 1 298 0 -chrVII 311715 312013 HC_gene_3036_tx_153 18 + 311715 312013 . 1 299 0 -chrVII 311715 312017 HC_gene_3036_tx_154 1 + 311715 312017 . 1 303 0 -chrVII 311715 312018 HC_gene_3036_tx_155 1 + 311715 312018 . 1 304 0 -chrVII 311715 312023 HC_gene_3036_tx_156 3 + 311715 312023 . 1 309 0 -chrVII 311715 312024 HC_gene_3036_tx_157 1 + 311715 312024 . 1 310 0 -chrVII 311715 312028 HC_gene_3036_tx_158 1 + 311715 312028 . 1 314 0 -chrVII 311715 312034 HC_gene_3036_tx_159 1 + 311715 312034 . 1 320 0 -chrVII 311715 312036 HC_gene_3036_tx_160 1 + 311715 312036 . 1 322 0 -chrVII 311715 312046 HC_gene_3036_tx_161 1 + 311715 312046 . 1 332 0 -chrVII 312071 313052 HC_gene_3471_tx_1 1 - 312071 313052 . 1 982 0 -chrVII 312181 312960 HC_gene_3036_tx_162 5 + 312181 312960 . 1 780 0 -chrVII 312181 313092 HC_gene_3036_tx_163 127 + 312181 313092 . 1 912 0 -chrVII 312181 313092 HC_gene_3036_tx_164 1 + 312181 313092 . 2 618,195 0,717 -chrVII 312334 312960 HC_gene_3036_tx_165 1 + 312334 312960 . 1 627 0 -chrVII 312334 313092 HC_gene_3036_tx_166 4 + 312334 313092 . 1 759 0 -chrVII 312389 313092 HC_gene_3036_tx_167 16 + 312389 313092 . 1 704 0 -chrVII 312616 313052 HC_gene_3471_tx_2 1 - 312616 313052 . 1 437 0 -chrVII 313196 314374 HC_gene_3037_tx_1 81 + 313196 314374 . 1 1179 0 -chrVII 313196 314374 HC_gene_3037_tx_2 1 + 313196 314374 . 2 1038,73 0,1106 -chrVII 313196 314374 HC_gene_3037_tx_3 1 + 313196 314374 . 2 437,532 0,647 -chrVII 313598 314374 HC_gene_3037_tx_4 12 + 313598 314374 . 1 777 0 -chrVII 313822 314374 HC_gene_3037_tx_5 16 + 313822 314374 . 1 553 0 -chrVII 314202 314406 MC_gene_3472_tx_1 1 - 314202 314406 . 1 205 0 -chrVII 314611 316613 HC_gene_3038_tx_1 47 + 314611 316613 . 1 2003 0 -chrVII 314611 316688 HC_gene_3038_tx_2 1 + 314611 316688 . 2 1107,879 0,1199 -chrVII 314611 316688 HC_gene_3038_tx_3 2 + 314611 316688 . 1 2078 0 -chrVII 315027 316613 HC_gene_3038_tx_4 5 + 315027 316613 . 1 1587 0 -chrVII 316152 316515 LC_gene_3473_tx_1 1 - 316152 316515 . 1 364 0 -chrVII 316788 317126 HC_gene_3039_tx_1 14 + 316788 317126 . 1 339 0 -chrVII 316788 317329 HC_gene_3039_tx_2 8 + 316788 317329 . 1 542 0 -chrVII 317297 318238 HC_gene_3040_tx_1 4 + 317297 318238 . 1 942 0 -chrVII 317297 318620 HC_gene_3040_tx_2 2 + 317297 318620 . 1 1324 0 -chrVII 317297 318939 HC_gene_3040_tx_3 1 + 317297 318939 . 2 712,814 0,829 -chrVII 317297 318939 HC_gene_3040_tx_4 3 + 317297 318939 . 1 1643 0 -chrVII 317297 318939 HC_gene_3040_tx_5 1 + 317297 318939 . 2 839,682 0,961 -chrVII 317297 318939 HC_gene_3040_tx_6 1 + 317297 318939 . 2 691,894 0,749 -chrVII 317297 319050 HC_gene_3040_tx_7 5 + 317297 319050 . 1 1754 0 -chrVII 317666 318238 HC_gene_3040_tx_8 1 + 317666 318238 . 1 573 0 -chrVII 317666 318620 HC_gene_3040_tx_9 1 + 317666 318620 . 1 955 0 -chrVII 317666 319050 HC_gene_3040_tx_10 1 + 317666 319050 . 1 1385 0 -chrVII 318962 319540 HC_gene_3474_tx_1 194 - 318962 319540 . 1 579 0 -chrVII 319043 319540 HC_gene_3474_tx_2 326 - 319043 319540 . 1 498 0 -chrVII 320042 320232 HC_gene_3041_tx_1 8 + 320042 320232 . 1 191 0 -chrVII 320042 320528 HC_gene_3041_tx_2 53 + 320042 320528 . 1 487 0 -chrVII 320388 320932 MC_gene_3475_tx_1 1 - 320388 320932 . 1 545 0 -chrVII 321739 323361 HC_gene_3042_tx_1 35 + 321739 323361 . 1 1623 0 -chrVII 321739 323361 HC_gene_3042_tx_2 1 + 321739 323361 . 2 868,706 0,917 -chrVII 321739 323361 HC_gene_3042_tx_3 1 + 321739 323361 . 2 235,974 0,649 -chrVII 321739 323361 HC_gene_3042_tx_4 1 + 321739 323361 . 2 598,970 0,653 -chrVII 321815 323361 HC_gene_3042_tx_5 6 + 321815 323361 . 1 1547 0 -chrVII 321815 323361 HC_gene_3042_tx_6 1 + 321815 323361 . 2 504,930 0,617 -chrVII 322518 323361 HC_gene_3042_tx_7 12 + 322518 323361 . 1 844 0 -chrVII 322677 323361 HC_gene_3042_tx_8 25 + 322677 323361 . 1 685 0 -chrVII 322677 323579 HC_gene_3042_tx_9 1 + 322677 323579 . 1 903 0 -chrVII 323037 323361 HC_gene_3042_tx_10 35 + 323037 323361 . 1 325 0 -chrVII 323206 323766 HC_gene_3476_tx_1 7 - 323206 323766 . 1 561 0 -chrVII 323206 324223 HC_gene_3476_tx_2 1 - 323206 324223 . 1 1018 0 -chrVII 323206 324514 HC_gene_3476_tx_3 1 - 323206 324514 . 1 1309 0 -chrVII 324305 325280 MC_gene_3043_tx_1 1 + 324305 325280 . 1 976 0 -chrVII 325292 326452 HC_gene_3044_tx_1 1 + 325292 326452 . 1 1161 0 -chrVII 325292 327287 HC_gene_3044_tx_2 1 + 325292 327287 . 1 1996 0 -chrVII 325563 326739 MC_gene_3477_tx_1 1 - 325563 326739 . 1 1177 0 -chrVII 325678 326447 HC_gene_3044_tx_3 1 + 325678 326447 . 1 770 0 -chrVII 326019 326447 HC_gene_3044_tx_4 1 + 326019 326447 . 1 429 0 -chrVII 326019 326451 HC_gene_3044_tx_5 1 + 326019 326451 . 1 433 0 -chrVII 326019 326454 HC_gene_3044_tx_6 1 + 326019 326454 . 1 436 0 -chrVII 326019 326465 HC_gene_3044_tx_7 2 + 326019 326465 . 1 447 0 -chrVII 326019 328278 HC_gene_3044_tx_8 2 + 326019 328278 . 1 2260 0 -chrVII 326019 328278 HC_gene_3044_tx_9 1 + 326019 328278 . 2 907,620 0,1640 -chrVII 326763 328278 HC_gene_3044_tx_10 1 + 326763 328278 . 1 1516 0 -chrVII 328583 328858 MC_gene_3045_tx_1 1 + 328583 328858 . 1 276 0 -chrVII 328780 329560 HC_gene_3478_tx_1 8 - 328780 329560 . 1 781 0 -chrVII 328780 330108 HC_gene_3478_tx_2 2 - 328780 330108 . 1 1329 0 -chrVII 328780 330657 HC_gene_3478_tx_3 32 - 328780 330657 . 1 1878 0 -chrVII 328780 330657 HC_gene_3478_tx_4 1 - 328780 330657 . 2 908,866 0,1012 -chrVII 328780 330657 HC_gene_3478_tx_5 1 - 328780 330657 . 2 862,942 0,936 -chrVII 330898 331955 HC_gene_3479_tx_1 2 - 330898 331955 . 1 1058 0 -chrVII 330898 332467 HC_gene_3479_tx_3 1 - 330898 332467 . 1 1570 0 -chrVII 330968 331955 HC_gene_3479_tx_2 1 - 330968 331955 . 1 988 0 -chrVII 330968 332467 HC_gene_3479_tx_4 4 - 330968 332467 . 1 1500 0 -chrVII 330968 332659 HC_gene_3479_tx_5 1 - 330968 332659 . 1 1692 0 -chrVII 333034 334655 HC_gene_3480_tx_1 1 - 333034 334655 . 1 1622 0 -chrVII 334856 337678 HC_gene_3046_tx_1 1 + 334856 337678 . 2 1363,1416 0,1407 -chrVII 334856 337678 HC_gene_3046_tx_2 1 + 334856 337678 . 2 1388,1388 0,1435 -chrVII 334856 337678 HC_gene_3046_tx_3 3 + 334856 337678 . 1 2823 0 -chrVII 334856 337678 HC_gene_3046_tx_4 1 + 334856 337678 . 2 198,2304 0,519 -chrVII 334856 337678 HC_gene_3046_tx_5 1 + 334856 337678 . 2 1692,360 0,2463 -chrVII 336634 337678 HC_gene_3046_tx_6 3 + 336634 337678 . 1 1045 0 -chrVII 337282 337610 MC_gene_3481_tx_1 1 - 337282 337610 . 1 329 0 -chrVII 337793 341975 HC_gene_3047_tx_1 7 + 337793 341975 . 1 4183 0 -chrVII 339731 341975 HC_gene_3047_tx_2 3 + 339731 341975 . 1 2245 0 -chrVII 341140 341975 HC_gene_3047_tx_3 10 + 341140 341975 . 1 836 0 -chrVII 341817 343111 HC_gene_3482_tx_1 1 - 341817 343111 . 1 1295 0 -chrVII 341897 343111 HC_gene_3482_tx_2 37 - 341897 343111 . 1 1215 0 -chrVII 342417 343195 LC_gene_3048_tx_1 1 + 342417 343195 . 1 779 0 -chrVII 343076 345183 LC_gene_3483_tx_1 1 - 343076 345183 . 1 2108 0 -chrVII 343286 344637 HC_gene_3049_tx_1 1 + 343286 344637 . 1 1352 0 -chrVII 343286 344694 HC_gene_3049_tx_2 5 + 343286 344694 . 1 1409 0 -chrVII 343286 345288 HC_gene_3049_tx_4 4 + 343286 345288 . 1 2003 0 -chrVII 343286 345288 HC_gene_3049_tx_5 1 + 343286 345288 . 2 78,1743 0,260 -chrVII 343286 345288 HC_gene_3049_tx_6 1 + 343286 345288 . 2 1517,423 0,1580 -chrVII 343286 345288 HC_gene_3049_tx_7 1 + 343286 345288 . 2 1842,98 0,1905 -chrVII 343286 345393 HC_gene_3049_tx_8 1 + 343286 345393 . 1 2108 0 -chrVII 343548 344637 HC_gene_3049_tx_3 1 + 343548 344637 . 1 1090 0 -chrVII 343548 345288 HC_gene_3049_tx_9 1 + 343548 345288 . 1 1741 0 -chrVII 343548 345393 HC_gene_3049_tx_10 2 + 343548 345393 . 1 1846 0 -chrVII 345201 345732 MC_gene_3484_tx_1 1 - 345201 345732 . 1 532 0 -chrVII 345986 346354 HC_gene_3050_tx_1 67 + 345986 346354 . 1 369 0 -chrVII 345986 346438 HC_gene_3050_tx_2 99 + 345986 346438 . 1 453 0 -chrVII 346049 346438 HC_gene_3050_tx_3 5 + 346049 346438 . 1 390 0 -chrVII 346199 346932 HC_gene_3485_tx_1 1 - 346199 346932 . 1 734 0 -chrVII 346289 346542 HC_gene_3485_tx_6 22 - 346289 346542 . 1 254 0 -chrVII 346289 346770 HC_gene_3485_tx_7 25 - 346289 346770 . 1 482 0 -chrVII 346289 346932 HC_gene_3485_tx_2 53 - 346289 346932 . 2 520,39 0,605 -chrVII 346289 346932 HC_gene_3485_tx_3 4 - 346289 346932 . 2 520,37 0,607 -chrVII 346289 346932 HC_gene_3485_tx_4 8 - 346289 346932 . 1 644 0 -chrVII 346289 346932 HC_gene_3485_tx_5 1 - 346289 346932 . 2 532,53 0,591 -chrVII 347186 349439 HC_gene_3051_tx_1 36 + 347186 349439 . 1 2254 0 -chrVII 347186 349439 HC_gene_3051_tx_2 1 + 347186 349439 . 2 1205,931 0,1323 -chrVII 347186 349439 HC_gene_3051_tx_3 1 + 347186 349439 . 2 1148,1010 0,1244 -chrVII 348073 349439 HC_gene_3051_tx_4 14 + 348073 349439 . 1 1367 0 -chrVII 348253 349439 HC_gene_3051_tx_5 4 + 348253 349439 . 1 1187 0 -chrVII 348498 349439 HC_gene_3051_tx_6 8 + 348498 349439 . 1 942 0 -chrVII 348781 349395 MC_gene_3486_tx_1 1 - 348781 349395 . 1 615 0 -chrVII 349576 350648 HC_gene_3052_tx_1 45 + 349576 350648 . 1 1073 0 -chrVII 349576 350648 HC_gene_3052_tx_2 1 + 349576 350648 . 2 857,174 0,899 -chrVII 349576 350648 HC_gene_3052_tx_3 1 + 349576 350648 . 2 363,640 0,433 -chrVII 350388 351625 HC_gene_3487_tx_1 5 - 350388 351625 . 1 1238 0 -chrVII 350388 351912 HC_gene_3487_tx_2 6 - 350388 351912 . 1 1525 0 -chrVII 350388 352351 HC_gene_3487_tx_3 19 - 350388 352351 . 1 1964 0 -chrVII 352358 352757 MC_gene_3488_tx_1 1 - 352358 352757 . 1 400 0 -chrVII 352989 355600 HC_gene_3053_tx_1 13 + 352989 355600 . 1 2612 0 -chrVII 352989 355600 HC_gene_3053_tx_2 1 + 352989 355600 . 2 1371,1128 0,1484 -chrVII 354387 355381 HC_gene_3489_tx_1 3 - 354387 355381 . 1 995 0 -chrVII 354387 355539 HC_gene_3489_tx_2 7 - 354387 355539 . 1 1153 0 -chrVII 354530 355381 HC_gene_3489_tx_3 1 - 354530 355381 . 1 852 0 -chrVII 354530 355539 HC_gene_3489_tx_4 4 - 354530 355539 . 1 1010 0 -chrVII 355071 355600 HC_gene_3053_tx_3 10 + 355071 355600 . 1 530 0 -chrVII 355747 357164 HC_gene_3054_tx_1 54 + 355747 357164 . 1 1418 0 -chrVII 355908 357164 HC_gene_3054_tx_2 6 + 355908 357164 . 1 1257 0 -chrVII 355993 357164 HC_gene_3054_tx_3 3 + 355993 357164 . 1 1172 0 -chrVII 356115 357164 HC_gene_3054_tx_4 15 + 356115 357164 . 1 1050 0 -chrVII 356502 357164 HC_gene_3054_tx_5 16 + 356502 357164 . 1 663 0 -chrVII 357176 358653 MC_gene_3055_tx_1 1 + 357176 358653 . 1 1478 0 -chrVII 357363 357882 MC_gene_3490_tx_1 1 - 357363 357882 . 1 520 0 -chrVII 358545 358976 LC_gene_3491_tx_1 1 - 358545 358976 . 1 432 0 -chrVII 358603 359307 HC_gene_3056_tx_1 133 + 358603 359307 . 1 705 0 -chrVII 358752 359307 HC_gene_3056_tx_2 52 + 358752 359307 . 1 556 0 -chrVII 359165 359852 HC_gene_3492_tx_1 5 - 359165 359852 . 1 688 0 -chrVII 359415 360236 HC_gene_3057_tx_1 34 + 359415 360236 . 1 822 0 -chrVII 360082 360536 HC_gene_3493_tx_1 26 - 360082 360536 . 1 455 0 -chrVII 360082 361316 HC_gene_3493_tx_2 17 - 360082 361316 . 1 1235 0 -chrVII 360082 361550 HC_gene_3493_tx_3 14 - 360082 361550 . 1 1469 0 -chrVII 360082 361550 HC_gene_3493_tx_4 1 - 360082 361550 . 2 1236,172 0,1297 -chrVII 360082 361550 HC_gene_3493_tx_5 1 - 360082 361550 . 2 99,1252 0,217 -chrVII 360082 361644 HC_gene_3493_tx_6 15 - 360082 361644 . 1 1563 0 -chrVII 360082 361644 HC_gene_3493_tx_7 1 - 360082 361644 . 2 845,632 0,931 -chrVII 360082 361938 HC_gene_3493_tx_8 138 - 360082 361938 . 1 1857 0 -chrVII 360082 361938 HC_gene_3493_tx_9 1 - 360082 361938 . 2 648,1131 0,726 -chrVII 360082 361938 HC_gene_3493_tx_10 1 - 360082 361938 . 2 819,962 0,895 -chrVII 360082 361938 HC_gene_3493_tx_11 1 - 360082 361938 . 2 837,912 0,945 -chrVII 360082 361938 HC_gene_3493_tx_12 1 - 360082 361938 . 2 815,949 0,908 -chrVII 360082 361938 HC_gene_3493_tx_13 1 - 360082 361938 . 2 745,650 0,1207 -chrVII 361052 361979 LC_gene_3058_tx_1 1 + 361052 361979 . 1 928 0 -chrVII 362087 364051 HC_gene_3059_tx_1 3 + 362087 364051 . 1 1965 0 -chrVII 362144 364039 HC_gene_3494_tx_1 33 - 362144 364039 . 1 1896 0 -chrVII 362144 364039 HC_gene_3494_tx_2 1 - 362144 364039 . 2 601,302 0,1594 -chrVII 363955 364039 HC_gene_3494_tx_3 1 - 363955 364039 . 1 85 0 -chrVII 364225 364706 HC_gene_3495_tx_1 237 - 364225 364706 . 1 482 0 -chrVII 364225 364856 HC_gene_3495_tx_2 408 - 364225 364856 . 1 632 0 -chrVII 364225 364955 HC_gene_3495_tx_3 406 - 364225 364955 . 1 731 0 -chrVII 364225 365528 HC_gene_3495_tx_4 1924 - 364225 365528 . 2 740,96 0,1208 -chrVII 364225 365528 HC_gene_3495_tx_5 59 - 364225 365528 . 2 740,88 0,1216 -chrVII 364225 365528 HC_gene_3495_tx_6 23 - 364225 365528 . 1 1304 0 -chrVII 364225 365528 HC_gene_3495_tx_7 3 - 364225 365528 . 2 757,82 0,1222 -chrVII 364225 366019 HC_gene_3495_tx_8 11 - 364225 366019 . 2 740,587 0,1208 -chrVII 364225 366019 HC_gene_3495_tx_9 48 - 364225 366019 . 3 740,94,34 0,1208,1761 -chrVII 364225 366019 HC_gene_3495_tx_10 7 - 364225 366019 . 1 1795 0 -chrVII 364225 366019 HC_gene_3495_tx_11 4 - 364225 366019 . 3 740,86,34 0,1216,1761 -chrVII 366302 366639 HC_gene_3496_tx_1 58 - 366302 366639 . 1 338 0 -chrVII 366354 366706 MC_gene_3060_tx_1 1 + 366354 366706 . 1 353 0 -chrVII 366367 366639 HC_gene_3496_tx_2 37 - 366367 366639 . 1 273 0 -chrVII 366577 368255 HC_gene_3497_tx_1 1 - 366577 368255 . 2 691,923 0,756 -chrVII 366577 368255 HC_gene_3497_tx_2 6 - 366577 368255 . 1 1679 0 -chrVII 368676 371313 HC_gene_3061_tx_1 6 + 368676 371313 . 1 2638 0 -chrVII 368676 371313 HC_gene_3061_tx_2 1 + 368676 371313 . 2 831,1583 0,1055 -chrVII 369800 371313 HC_gene_3061_tx_3 2 + 369800 371313 . 1 1514 0 -chrVII 369800 371313 HC_gene_3061_tx_4 1 + 369800 371313 . 2 420,510 0,1004 -chrVII 370051 371313 HC_gene_3061_tx_5 4 + 370051 371313 . 1 1263 0 -chrVII 370615 371219 HC_gene_3498_tx_1 44 - 370615 371219 . 1 605 0 -chrVII 371353 374129 HC_gene_3062_tx_1 1 + 371353 374129 . 1 2777 0 -chrVII 371568 374238 HC_gene_3062_tx_2 16 + 371568 374238 . 1 2671 0 -chrVII 374038 374651 HC_gene_3499_tx_1 9 - 374038 374651 . 1 614 0 -chrVII 374038 374853 HC_gene_3499_tx_2 18 - 374038 374853 . 1 816 0 -chrVII 374204 374651 HC_gene_3499_tx_3 31 - 374204 374651 . 1 448 0 -chrVII 374204 374853 HC_gene_3499_tx_4 109 - 374204 374853 . 1 650 0 -chrVII 375039 375781 HC_gene_3063_tx_1 110 + 375039 375781 . 1 743 0 -chrVII 375039 375854 HC_gene_3063_tx_2 103 + 375039 375854 . 1 816 0 -chrVII 375136 375781 HC_gene_3063_tx_3 6 + 375136 375781 . 1 646 0 -chrVII 375136 375854 HC_gene_3063_tx_4 12 + 375136 375854 . 1 719 0 -chrVII 375702 377199 MC_gene_3500_tx_1 1 - 375702 377199 . 1 1498 0 -chrVII 376018 377294 HC_gene_3064_tx_1 33 + 376018 377294 . 1 1277 0 -chrVII 376649 377294 HC_gene_3064_tx_2 3 + 376649 377294 . 1 646 0 -chrVII 377433 379809 HC_gene_3065_tx_1 20 + 377433 379809 . 1 2377 0 -chrVII 377433 379809 HC_gene_3065_tx_2 1 + 377433 379809 . 2 1304,979 0,1398 -chrVII 377620 379809 HC_gene_3065_tx_3 1 + 377620 379809 . 2 458,1640 0,550 -chrVII 377954 379809 HC_gene_3065_tx_4 3 + 377954 379809 . 1 1856 0 -chrVII 378382 379809 HC_gene_3065_tx_5 2 + 378382 379809 . 1 1428 0 -chrVII 378782 379809 HC_gene_3065_tx_6 7 + 378782 379809 . 1 1028 0 -chrVII 379118 379809 HC_gene_3065_tx_7 18 + 379118 379809 . 1 692 0 -chrVII 379702 380051 HC_gene_3501_tx_1 2 - 379702 380051 . 1 350 0 -chrVII 379702 380139 HC_gene_3501_tx_2 6 - 379702 380139 . 1 438 0 -chrVII 379702 380139 HC_gene_3501_tx_3 1 - 379702 380139 . 2 76,219 0,219 -chrVII 379702 380394 HC_gene_3501_tx_4 5 - 379702 380394 . 1 693 0 -chrVII 379702 381315 HC_gene_3501_tx_5 20 - 379702 381315 . 1 1614 0 -chrVII 379702 381315 HC_gene_3501_tx_6 1 - 379702 381315 . 2 641,866 0,748 -chrVII 379702 381315 HC_gene_3501_tx_7 1 - 379702 381315 . 2 639,844 0,770 -chrVII 380134 381519 LC_gene_3066_tx_1 1 + 380134 381519 . 1 1386 0 -chrVII 381461 381934 HC_gene_3502_tx_1 8 - 381461 381934 . 1 474 0 -chrVII 381461 383216 HC_gene_3502_tx_2 7 - 381461 383216 . 1 1756 0 -chrVII 382188 382743 LC_gene_3067_tx_1 1 + 382188 382743 . 1 556 0 -chrVII 383397 384761 HC_gene_3068_tx_1 1 + 383397 384761 . 1 1365 0 -chrVII 383397 385181 HC_gene_3068_tx_2 7 + 383397 385181 . 1 1785 0 -chrVII 383397 385181 HC_gene_3068_tx_3 1 + 383397 385181 . 2 89,1616 0,169 -chrVII 383439 385181 HC_gene_3068_tx_4 1 + 383439 385181 . 1 1743 0 -chrVII 383473 384540 MC_gene_3503_tx_1 1 - 383473 384540 . 1 1068 0 -chrVII 383478 385181 HC_gene_3068_tx_5 1 + 383478 385181 . 1 1704 0 -chrVII 385139 388793 HC_gene_3069_tx_1 8 + 385139 388793 . 1 3655 0 -chrVII 385139 388793 HC_gene_3069_tx_2 1 + 385139 388793 . 2 888,1724 0,1931 -chrVII 385139 388793 HC_gene_3069_tx_3 1 + 385139 388793 . 2 383,3114 0,541 -chrVII 385139 388875 HC_gene_3069_tx_4 1 + 385139 388875 . 2 968,2677 0,1060 -chrVII 385139 388875 HC_gene_3069_tx_5 5 + 385139 388875 . 1 3737 0 -chrVII 385247 388793 HC_gene_3069_tx_6 2 + 385247 388793 . 1 3547 0 -chrVII 385247 388875 HC_gene_3069_tx_7 1 + 385247 388875 . 1 3629 0 -chrVII 385636 388875 HC_gene_3069_tx_8 1 + 385636 388875 . 1 3240 0 -chrVII 386068 388793 HC_gene_3069_tx_9 1 + 386068 388793 . 1 2726 0 -chrVII 386068 388875 HC_gene_3069_tx_10 1 + 386068 388875 . 1 2808 0 -chrVII 386206 388793 HC_gene_3069_tx_11 2 + 386206 388793 . 1 2588 0 -chrVII 386206 388875 HC_gene_3069_tx_12 2 + 386206 388875 . 1 2670 0 -chrVII 386567 388793 HC_gene_3069_tx_13 1 + 386567 388793 . 1 2227 0 -chrVII 388037 388793 HC_gene_3069_tx_14 10 + 388037 388793 . 1 757 0 -chrVII 388037 388875 HC_gene_3069_tx_15 6 + 388037 388875 . 1 839 0 -chrVII 388179 388793 HC_gene_3069_tx_16 11 + 388179 388793 . 1 615 0 -chrVII 388179 388875 HC_gene_3069_tx_17 5 + 388179 388875 . 1 697 0 -chrVII 388362 388793 HC_gene_3069_tx_18 4 + 388362 388793 . 1 432 0 -chrVII 388362 388875 HC_gene_3069_tx_19 8 + 388362 388875 . 1 514 0 -chrVII 388759 389785 HC_gene_3504_tx_1 4 - 388759 389785 . 1 1027 0 -chrVII 388862 389785 HC_gene_3504_tx_2 48 - 388862 389785 . 1 924 0 -chrVII 388862 389785 HC_gene_3504_tx_3 1 - 388862 389785 . 2 501,314 0,610 -chrVII 388948 389479 MC_gene_3070_tx_1 1 + 388948 389479 . 1 532 0 -chrVII 389008 389380 MC_gene_3070_tx_2 1 + 389008 389380 . 1 373 0 -chrVII 389947 392035 HC_gene_3071_tx_1 1 + 389947 392035 . 2 1165,863 0,1226 -chrVII 389947 392035 HC_gene_3071_tx_2 5 + 389947 392035 . 1 2089 0 -chrVII 389947 392271 HC_gene_3071_tx_3 4 + 389947 392271 . 1 2325 0 -chrVII 391412 391922 LC_gene_3505_tx_1 1 - 391412 391922 . 1 511 0 -chrVII 392187 393751 HC_gene_3072_tx_1 14 + 392187 393751 . 1 1565 0 -chrVII 392781 393751 HC_gene_3072_tx_2 6 + 392781 393751 . 1 971 0 -chrVII 393256 393751 HC_gene_3072_tx_3 5 + 393256 393751 . 1 496 0 -chrVII 393299 393653 HC_gene_3506_tx_1 2 - 393299 393653 . 1 355 0 -chrVII 393299 393712 HC_gene_3506_tx_2 2 - 393299 393712 . 1 414 0 -chrVII 393925 394727 HC_gene_3073_tx_1 63 + 393925 394727 . 1 803 0 -chrVII 393925 394927 HC_gene_3073_tx_2 45 + 393925 394927 . 1 1003 0 -chrVII 394136 394727 HC_gene_3073_tx_3 3 + 394136 394727 . 1 592 0 -chrVII 394136 394927 HC_gene_3073_tx_4 4 + 394136 394927 . 1 792 0 -chrVII 394595 394927 HC_gene_3073_tx_5 6 + 394595 394927 . 1 333 0 -chrVII 394753 395803 HC_gene_3507_tx_1 21 - 394753 395803 . 1 1051 0 -chrVII 394753 395803 HC_gene_3507_tx_2 1 - 394753 395803 . 2 778,198 0,853 -chrVII 395159 396037 MC_gene_3074_tx_1 1 + 395159 396037 . 1 879 0 -chrVII 395965 396579 HC_gene_3508_tx_1 14 - 395965 396579 . 1 615 0 -chrVII 395965 397794 HC_gene_3508_tx_2 52 - 395965 397794 . 1 1830 0 -chrVII 395965 397794 HC_gene_3508_tx_3 1 - 395965 397794 . 2 842,947 0,883 -chrVII 397949 398528 LC_gene_3509_tx_1 1 - 397949 398528 . 1 580 0 -chrVII 398171 398603 HC_gene_3075_tx_1 15 + 398171 398603 . 1 433 0 -chrVII 398192 398603 HC_gene_3075_tx_2 1 + 398192 398603 . 1 412 0 -chrVII 398280 398603 HC_gene_3075_tx_3 4 + 398280 398603 . 1 324 0 -chrVII 399211 400395 HC_gene_3076_tx_1 295 + 399211 400395 . 1 1185 0 -chrVII 399211 400395 HC_gene_3076_tx_2 1 + 399211 400395 . 2 729,358 0,827 -chrVII 399211 400395 HC_gene_3076_tx_3 1 + 399211 400395 . 2 1011,63 0,1122 -chrVII 399211 400395 HC_gene_3076_tx_4 1 + 399211 400395 . 2 978,75 0,1110 -chrVII 399211 400549 HC_gene_3076_tx_5 1 + 399211 400549 . 1 1339 0 -chrVII 399471 400395 HC_gene_3076_tx_6 86 + 399471 400395 . 1 925 0 -chrVII 399471 400395 HC_gene_3076_tx_7 1 + 399471 400395 . 2 755,90 0,835 -chrVII 399619 400395 HC_gene_3076_tx_8 103 + 399619 400395 . 1 777 0 -chrVII 399619 400395 HC_gene_3076_tx_9 1 + 399619 400395 . 2 619,83 0,694 -chrVII 399619 400395 HC_gene_3076_tx_10 1 + 399619 400395 . 2 570,132 0,645 -chrVII 399819 400395 HC_gene_3076_tx_11 103 + 399819 400395 . 1 577 0 -chrVII 399819 400395 HC_gene_3076_tx_12 1 + 399819 400395 . 2 370,90 0,487 -chrVII 399819 400549 HC_gene_3076_tx_14 1 + 399819 400549 . 1 731 0 -chrVII 399903 400395 HC_gene_3076_tx_13 64 + 399903 400395 . 1 493 0 -chrVII 400531 400969 HC_gene_3510_tx_1 37 - 400531 400969 . 1 439 0 -chrVII 400531 401119 HC_gene_3510_tx_2 55 - 400531 401119 . 1 589 0 -chrVII 400531 401211 HC_gene_3510_tx_3 9 - 400531 401211 . 1 681 0 -chrVII 400531 401285 HC_gene_3510_tx_4 1 - 400531 401285 . 1 755 0 -chrVII 400531 401294 HC_gene_3510_tx_5 1 - 400531 401294 . 1 764 0 -chrVII 400531 401311 HC_gene_3510_tx_6 1 - 400531 401311 . 1 781 0 -chrVII 400531 401328 HC_gene_3510_tx_7 1 - 400531 401328 . 1 798 0 -chrVII 400531 401338 HC_gene_3510_tx_8 1 - 400531 401338 . 1 808 0 -chrVII 400531 401339 HC_gene_3510_tx_9 1 - 400531 401339 . 1 809 0 -chrVII 400531 401348 HC_gene_3510_tx_10 1 - 400531 401348 . 1 818 0 -chrVII 400531 401360 HC_gene_3510_tx_11 402 - 400531 401360 . 1 830 0 -chrVII 400531 401360 HC_gene_3510_tx_12 1 - 400531 401360 . 2 611,171 0,659 -chrVII 400531 401360 HC_gene_3510_tx_13 1 - 400531 401360 . 3 139,211,280 0,225,550 -chrVII 400531 401380 HC_gene_3510_tx_14 1 - 400531 401380 . 1 850 0 -chrVII 400698 401480 LC_gene_3077_tx_1 1 + 400698 401480 . 1 783 0 -chrVII 401839 403469 HC_gene_3078_tx_1 46 + 401839 403469 . 1 1631 0 -chrVII 401839 403531 HC_gene_3078_tx_2 1 + 401839 403531 . 1 1693 0 -chrVII 401857 402346 MC_gene_3511_tx_1 1 - 401857 402346 . 1 490 0 -chrVII 401906 403469 HC_gene_3078_tx_3 1 + 401906 403469 . 2 288,1061 0,503 -chrVII 401906 403469 HC_gene_3078_tx_4 3 + 401906 403469 . 1 1564 0 -chrVII 401906 403610 HC_gene_3078_tx_5 1 + 401906 403610 . 1 1705 0 -chrVII 402196 403469 HC_gene_3078_tx_6 4 + 402196 403469 . 1 1274 0 -chrVII 402350 404302 HC_gene_3512_tx_1 1 - 402350 404302 . 2 1250,223 0,1730 -chrVII 402350 404302 HC_gene_3512_tx_2 1 - 402350 404302 . 1 1953 0 -chrVII 402506 403469 HC_gene_3078_tx_7 33 + 402506 403469 . 1 964 0 -chrVII 402506 403531 HC_gene_3078_tx_8 2 + 402506 403531 . 1 1026 0 -chrVII 402506 403610 HC_gene_3078_tx_9 3 + 402506 403610 . 1 1105 0 -chrVII 402730 403469 HC_gene_3078_tx_10 6 + 402730 403469 . 1 740 0 -chrVII 402730 403531 HC_gene_3078_tx_11 1 + 402730 403531 . 1 802 0 -chrVII 402817 403469 HC_gene_3078_tx_12 11 + 402817 403469 . 1 653 0 -chrVII 402817 403531 HC_gene_3078_tx_13 1 + 402817 403531 . 1 715 0 -chrVII 402877 404302 HC_gene_3512_tx_3 1 - 402877 404302 . 1 1426 0 -chrVII 402956 403469 HC_gene_3078_tx_14 14 + 402956 403469 . 1 514 0 -chrVII 402956 403531 HC_gene_3078_tx_15 1 + 402956 403531 . 1 576 0 -chrVII 402956 403610 HC_gene_3078_tx_16 1 + 402956 403610 . 1 655 0 -chrVII 402979 404302 HC_gene_3512_tx_4 1 - 402979 404302 . 1 1324 0 -chrVII 403379 404111 HC_gene_3512_tx_5 4 - 403379 404111 . 1 733 0 -chrVII 403379 404302 HC_gene_3512_tx_6 3 - 403379 404302 . 1 924 0 -chrVII 403586 404302 HC_gene_3512_tx_7 1 - 403586 404302 . 1 717 0 -chrVII 403640 404503 MC_gene_3079_tx_1 1 + 403640 404503 . 1 864 0 -chrVII 404372 404518 MC_gene_3513_tx_1 1 - 404372 404518 . 1 147 0 -chrVII 405475 405713 MC_gene_3080_tx_1 1 + 405475 405713 . 1 239 0 -chrVII 405731 406227 HC_gene_3081_tx_1 2 + 405731 406227 . 1 497 0 -chrVII 405731 406329 HC_gene_3081_tx_2 1 + 405731 406329 . 1 599 0 -chrVII 405731 406332 HC_gene_3081_tx_3 1 + 405731 406332 . 1 602 0 -chrVII 405731 406789 HC_gene_3081_tx_4 46 + 405731 406789 . 1 1059 0 -chrVII 405731 406789 HC_gene_3081_tx_5 1 + 405731 406789 . 2 918,61 0,998 -chrVII 405731 406885 HC_gene_3081_tx_6 3 + 405731 406885 . 1 1155 0 -chrVII 406016 406227 HC_gene_3081_tx_7 1 + 406016 406227 . 1 212 0 -chrVII 406016 406789 HC_gene_3081_tx_8 5 + 406016 406789 . 1 774 0 -chrVII 406016 406885 HC_gene_3081_tx_9 1 + 406016 406885 . 1 870 0 -chrVII 406141 406789 HC_gene_3081_tx_10 11 + 406141 406789 . 1 649 0 -chrVII 406690 407162 HC_gene_3514_tx_1 6 - 406690 407162 . 1 473 0 -chrVII 406690 407291 HC_gene_3514_tx_2 5 - 406690 407291 . 1 602 0 -chrVII 406690 407381 HC_gene_3514_tx_3 6 - 406690 407381 . 1 692 0 -chrVII 406690 407497 HC_gene_3514_tx_4 8 - 406690 407497 . 1 808 0 -chrVII 406690 408170 HC_gene_3514_tx_5 1 - 406690 408170 . 1 1481 0 -chrVII 406690 408275 HC_gene_3514_tx_6 2 - 406690 408275 . 1 1586 0 -chrVII 406690 408275 HC_gene_3514_tx_7 1 - 406690 408275 . 2 749,746 0,840 -chrVII 406690 408717 HC_gene_3514_tx_8 5 - 406690 408717 . 1 2028 0 -chrVII 406690 409022 HC_gene_3514_tx_9 3 - 406690 409022 . 1 2333 0 -chrVII 406690 409462 HC_gene_3514_tx_10 2 - 406690 409462 . 1 2773 0 -chrVII 406690 409587 HC_gene_3514_tx_11 1 - 406690 409587 . 1 2898 0 -chrVII 406690 409774 HC_gene_3514_tx_12 8 - 406690 409774 . 1 3085 0 -chrVII 409972 410311 HC_gene_3515_tx_1 39 - 409972 410311 . 1 340 0 -chrVII 409972 410446 HC_gene_3515_tx_2 29 - 409972 410446 . 1 475 0 -chrVII 409972 410588 HC_gene_3515_tx_3 28 - 409972 410588 . 1 617 0 -chrVII 409972 410736 HC_gene_3515_tx_4 30 - 409972 410736 . 1 765 0 -chrVII 409972 411013 HC_gene_3515_tx_5 22 - 409972 411013 . 1 1042 0 -chrVII 409972 411069 HC_gene_3515_tx_6 10 - 409972 411069 . 1 1098 0 -chrVII 409972 411315 HC_gene_3515_tx_7 199 - 409972 411315 . 1 1344 0 -chrVII 411464 412381 MC_gene_3082_tx_1 1 + 411464 412381 . 1 918 0 -chrVII 411808 412112 MC_gene_3516_tx_1 1 - 411808 412112 . 1 305 0 -chrVII 412476 413681 LC_gene_3083_tx_1 1 + 412476 413681 . 1 1206 0 -chrVII 412795 413875 LC_gene_3517_tx_1 1 - 412795 413875 . 1 1081 0 -chrVII 413673 415941 HC_gene_3084_tx_1 1 + 413673 415941 . 1 2269 0 -chrVII 413743 415941 HC_gene_3084_tx_2 3 + 413743 415941 . 1 2199 0 -chrVII 414047 415941 HC_gene_3084_tx_3 5 + 414047 415941 . 1 1895 0 -chrVII 414545 415941 HC_gene_3084_tx_4 1 + 414545 415941 . 1 1397 0 -chrVII 414773 415941 HC_gene_3084_tx_5 5 + 414773 415941 . 1 1169 0 -chrVII 415178 415941 HC_gene_3084_tx_6 2 + 415178 415941 . 1 764 0 -chrVII 415867 416763 HC_gene_3518_tx_1 9 - 415867 416763 . 1 897 0 -chrVII 415867 417262 HC_gene_3518_tx_3 46 - 415867 417262 . 1 1396 0 -chrVII 415969 416763 HC_gene_3518_tx_2 7 - 415969 416763 . 1 795 0 -chrVII 415969 417262 HC_gene_3518_tx_4 18 - 415969 417262 . 1 1294 0 -chrVII 415969 417262 HC_gene_3518_tx_5 1 - 415969 417262 . 2 885,289 0,1005 -chrVII 415969 417262 HC_gene_3518_tx_6 1 - 415969 417262 . 2 728,451 0,843 -chrVII 416382 417155 LC_gene_3085_tx_1 1 + 416382 417155 . 1 774 0 -chrVII 417368 418637 LC_gene_3519_tx_1 1 - 417368 418637 . 1 1270 0 -chrVII 417460 418668 HC_gene_3086_tx_1 67 + 417460 418668 . 1 1209 0 -chrVII 417460 418849 HC_gene_3086_tx_2 1 + 417460 418849 . 1 1390 0 -chrVII 418755 420632 HC_gene_3520_tx_1 1 - 418755 420632 . 1 1878 0 -chrVII 418813 418849 HC_gene_3086_tx_3 1 + 418813 418849 . 1 37 0 -chrVII 418813 419424 HC_gene_3086_tx_4 98 + 418813 419424 . 1 612 0 -chrVII 418920 419424 HC_gene_3086_tx_5 24 + 418920 419424 . 1 505 0 -chrVII 419037 419424 HC_gene_3086_tx_6 8 + 419037 419424 . 1 388 0 -chrVII 419209 420632 HC_gene_3520_tx_2 3 - 419209 420632 . 1 1424 0 -chrVII 419300 419589 HC_gene_3520_tx_7 29 - 419300 419589 . 1 290 0 -chrVII 419300 419648 HC_gene_3520_tx_8 15 - 419300 419648 . 1 349 0 -chrVII 419300 419814 HC_gene_3520_tx_9 24 - 419300 419814 . 1 515 0 -chrVII 419300 419814 HC_gene_3520_tx_10 1 - 419300 419814 . 2 296,157 0,358 -chrVII 419300 420124 HC_gene_3520_tx_13 18 - 419300 420124 . 1 825 0 -chrVII 419300 420124 HC_gene_3520_tx_14 1 - 419300 420124 . 2 285,476 0,349 -chrVII 419300 420632 HC_gene_3520_tx_3 109 - 419300 420632 . 1 1333 0 -chrVII 419300 420632 HC_gene_3520_tx_4 1 - 419300 420632 . 2 720,480 0,853 -chrVII 419374 419589 HC_gene_3520_tx_15 1 - 419374 419589 . 1 216 0 -chrVII 419374 419814 HC_gene_3520_tx_11 2 - 419374 419814 . 1 441 0 -chrVII 419374 420632 HC_gene_3520_tx_5 5 - 419374 420632 . 1 1259 0 -chrVII 419446 419814 HC_gene_3520_tx_12 2 - 419446 419814 . 1 369 0 -chrVII 419446 420632 HC_gene_3520_tx_6 4 - 419446 420632 . 1 1187 0 -chrVII 420910 421222 MC_gene_3087_tx_1 1 + 420910 421222 . 1 313 0 -chrVII 420977 421475 MC_gene_3088_tx_1 1 + 420977 421475 . 1 499 0 -chrVII 421244 421794 LC_gene_3521_tx_1 1 - 421244 421794 . 1 551 0 -chrVII 422128 422916 HC_gene_3089_tx_1 16 + 422128 422916 . 1 789 0 -chrVII 423348 423830 MC_gene_3522_tx_1 1 - 423348 423830 . 1 483 0 -chrVII 423854 425130 HC_gene_3090_tx_1 129 + 423854 425130 . 1 1277 0 -chrVII 423854 425130 HC_gene_3090_tx_2 1 + 423854 425130 . 2 1130,60 0,1217 -chrVII 423854 425130 HC_gene_3090_tx_3 1 + 423854 425130 . 2 1105,64 0,1213 -chrVII 424189 425130 HC_gene_3090_tx_4 16 + 424189 425130 . 1 942 0 -chrVII 425016 426694 HC_gene_3523_tx_1 4 - 425016 426694 . 1 1679 0 -chrVII 425016 426850 HC_gene_3523_tx_2 35 - 425016 426850 . 1 1835 0 -chrVII 425278 426850 HC_gene_3523_tx_3 1 - 425278 426850 . 1 1573 0 -chrVII 425288 426850 HC_gene_3523_tx_4 1 - 425288 426850 . 1 1563 0 -chrVII 425294 426850 HC_gene_3523_tx_5 1 - 425294 426850 . 1 1557 0 -chrVII 425300 426850 HC_gene_3523_tx_6 1 - 425300 426850 . 1 1551 0 -chrVII 425303 426850 HC_gene_3523_tx_7 2 - 425303 426850 . 1 1548 0 -chrVII 425304 426850 HC_gene_3523_tx_8 1 - 425304 426850 . 1 1547 0 -chrVII 425305 426850 HC_gene_3523_tx_9 2 - 425305 426850 . 1 1546 0 -chrVII 425307 426850 HC_gene_3523_tx_10 2 - 425307 426850 . 1 1544 0 -chrVII 425308 426694 HC_gene_3523_tx_11 1 - 425308 426694 . 1 1387 0 -chrVII 425308 426850 HC_gene_3523_tx_12 1 - 425308 426850 . 1 1543 0 -chrVII 426961 427375 HC_gene_3091_tx_1 1 + 426961 427375 . 1 415 0 -chrVII 427155 427484 HC_gene_3524_tx_1 68 - 427155 427484 . 1 330 0 -chrVII 427155 427706 HC_gene_3524_tx_2 186 - 427155 427706 . 1 552 0 -chrVII 427155 427869 HC_gene_3524_tx_3 34 - 427155 427869 . 1 715 0 -chrVII 427155 428023 HC_gene_3524_tx_4 573 - 427155 428023 . 1 869 0 -chrVII 427207 427375 HC_gene_3091_tx_2 3 + 427207 427375 . 1 169 0 -chrVII 428043 428345 MC_gene_3525_tx_1 1 - 428043 428345 . 1 303 0 -chrVII 428492 430650 HC_gene_3092_tx_1 3 + 428492 430650 . 1 2159 0 -chrVII 430916 431490 MC_gene_3093_tx_1 1 + 430916 431490 . 1 575 0 -chrVII 430977 431444 MC_gene_3093_tx_2 1 + 430977 431444 . 1 468 0 -chrVII 431318 432175 MC_gene_3526_tx_1 1 - 431318 432175 . 1 858 0 -chrVII 431371 433102 MC_gene_3527_tx_1 1 - 431371 433102 . 1 1732 0 -chrVII 431398 432748 MC_gene_3527_tx_2 1 - 431398 432748 . 1 1351 0 -chrVII 431418 432623 MC_gene_3527_tx_3 1 - 431418 432623 . 1 1206 0 -chrVII 433496 435102 HC_gene_3094_tx_1 2 + 433496 435102 . 1 1607 0 -chrVII 433656 435102 HC_gene_3094_tx_2 3 + 433656 435102 . 1 1447 0 -chrVII 433950 435102 HC_gene_3094_tx_3 1 + 433950 435102 . 1 1153 0 -chrVII 434135 435102 HC_gene_3094_tx_4 2 + 434135 435102 . 1 968 0 -chrVII 436189 436548 HC_gene_3095_tx_1 3 + 436189 436548 . 2 124,174 0,186 -chrVII 436189 436607 HC_gene_3095_tx_2 1 + 436189 436607 . 2 124,233 0,186 -chrVII 436189 436738 HC_gene_3095_tx_3 1 + 436189 436738 . 2 124,364 0,186 -chrVII 436284 436548 HC_gene_3095_tx_4 1 + 436284 436548 . 1 265 0 -chrVII 436368 436888 HC_gene_3528_tx_1 1 - 436368 436888 . 1 521 0 -chrVII 436443 436888 HC_gene_3528_tx_2 12 - 436443 436888 . 1 446 0 -chrVII 437231 437904 HC_gene_3529_tx_1 37 - 437231 437904 . 1 674 0 -chrVII 437375 437752 HC_gene_3529_tx_2 363 - 437375 437752 . 1 378 0 -chrVII 437375 437904 HC_gene_3529_tx_3 2517 - 437375 437904 . 1 530 0 -chrVII 437375 438416 HC_gene_3529_tx_4 50 - 437375 438416 . 1 1042 0 -chrVII 437375 438429 HC_gene_3529_tx_5 4 - 437375 438429 . 2 567,32 0,1023 -chrVII 437375 438432 HC_gene_3529_tx_6 6 - 437375 438432 . 2 567,35 0,1023 -chrVII 437375 438435 HC_gene_3529_tx_7 7 - 437375 438435 . 2 567,38 0,1023 -chrVII 437375 438443 HC_gene_3529_tx_8 4 - 437375 438443 . 2 567,46 0,1023 -chrVII 439032 439739 HC_gene_3096_tx_1 1696 + 439032 439739 . 2 62,416 0,292 -chrVII 439032 439739 HC_gene_3096_tx_2 124 + 439032 439739 . 2 66,409 0,299 -chrVII 439032 439739 HC_gene_3096_tx_3 430 + 439032 439739 . 2 66,416 0,292 -chrVII 439032 439739 HC_gene_3096_tx_4 161 + 439032 439739 . 1 708 0 -chrVII 439032 439739 HC_gene_3096_tx_5 7 + 439032 439739 . 2 51,416 0,292 -chrVII 439032 439739 HC_gene_3096_tx_6 4 + 439032 439739 . 2 49,426 0,282 -chrVII 439032 439739 HC_gene_3096_tx_7 15 + 439032 439739 . 2 58,416 0,292 -chrVII 439032 439739 HC_gene_3096_tx_8 13 + 439032 439739 . 2 49,416 0,292 -chrVII 439032 439739 HC_gene_3096_tx_9 4 + 439032 439739 . 2 62,409 0,299 -chrVII 439032 439739 HC_gene_3096_tx_10 4 + 439032 439739 . 2 57,416 0,292 -chrVII 439032 439739 HC_gene_3096_tx_11 6 + 439032 439739 . 3 62,58,260 0,292,448 -chrVII 439032 439739 HC_gene_3096_tx_12 6 + 439032 439739 . 2 50,416 0,292 -chrVII 439032 439739 HC_gene_3096_tx_13 5 + 439032 439739 . 2 47,416 0,292 -chrVII 439032 439739 HC_gene_3096_tx_14 7 + 439032 439739 . 2 46,426 0,282 -chrVII 439032 439874 HC_gene_3096_tx_15 10 + 439032 439874 . 2 62,551 0,292 -chrVII 439032 439874 HC_gene_3096_tx_16 4 + 439032 439874 . 1 843 0 -chrVII 439321 439739 HC_gene_3096_tx_17 2117 + 439321 439739 . 1 419 0 -chrVII 439321 439739 HC_gene_3096_tx_18 4 + 439321 439739 . 2 61,260 0,159 -chrVII 439321 439874 HC_gene_3096_tx_19 10 + 439321 439874 . 1 554 0 -chrVII 439662 439876 MC_gene_3530_tx_1 1 - 439662 439876 . 1 215 0 -chrVII 440020 440614 HC_gene_3097_tx_1 297 + 440020 440614 . 1 595 0 -chrVII 440249 440614 HC_gene_3097_tx_2 22 + 440249 440614 . 1 366 0 -chrVII 440876 442389 HC_gene_3531_tx_1 1 - 440876 442389 . 1 1514 0 -chrVII 440876 442480 HC_gene_3531_tx_2 1 - 440876 442480 . 1 1605 0 -chrVII 440876 442624 HC_gene_3531_tx_3 1 - 440876 442624 . 1 1749 0 -chrVII 440876 443066 HC_gene_3531_tx_4 1 - 440876 443066 . 2 1267,872 0,1319 -chrVII 440876 443066 HC_gene_3531_tx_5 1 - 440876 443066 . 2 1315,824 0,1367 -chrVII 440980 441441 HC_gene_3531_tx_30 31 - 440980 441441 . 1 462 0 -chrVII 440980 441547 HC_gene_3531_tx_31 20 - 440980 441547 . 1 568 0 -chrVII 440980 441798 HC_gene_3531_tx_32 15 - 440980 441798 . 1 819 0 -chrVII 440980 441861 HC_gene_3531_tx_33 23 - 440980 441861 . 1 882 0 -chrVII 440980 442301 HC_gene_3531_tx_6 3 - 440980 442301 . 1 1322 0 -chrVII 440980 442389 HC_gene_3531_tx_7 29 - 440980 442389 . 1 1410 0 -chrVII 440980 442389 HC_gene_3531_tx_8 1 - 440980 442389 . 2 1163,195 0,1215 -chrVII 440980 442480 HC_gene_3531_tx_9 22 - 440980 442480 . 1 1501 0 -chrVII 440980 442480 HC_gene_3531_tx_10 1 - 440980 442480 . 2 1211,226 0,1275 -chrVII 440980 442480 HC_gene_3531_tx_11 1 - 440980 442480 . 2 942,64 0,1437 -chrVII 440980 442624 HC_gene_3531_tx_12 7 - 440980 442624 . 1 1645 0 -chrVII 440980 442624 HC_gene_3531_tx_13 1 - 440980 442624 . 2 1442,169 0,1476 -chrVII 440980 442624 HC_gene_3531_tx_14 1 - 440980 442624 . 2 1211,394 0,1251 -chrVII 440980 442714 HC_gene_3531_tx_15 20 - 440980 442714 . 1 1735 0 -chrVII 440980 442714 HC_gene_3531_tx_16 1 - 440980 442714 . 2 1068,460 0,1275 -chrVII 440980 443066 HC_gene_3531_tx_17 99 - 440980 443066 . 1 2087 0 -chrVII 440980 443066 HC_gene_3531_tx_18 1 - 440980 443066 . 2 909,707 0,1380 -chrVII 440980 443066 HC_gene_3531_tx_19 1 - 440980 443066 . 2 1707,178 0,1909 -chrVII 440980 443066 HC_gene_3531_tx_20 1 - 440980 443066 . 2 1792,92 0,1995 -chrVII 440980 443066 HC_gene_3531_tx_21 1 - 440980 443066 . 2 1478,509 0,1578 -chrVII 440980 443066 HC_gene_3531_tx_22 1 - 440980 443066 . 2 1753,272 0,1815 -chrVII 440980 443066 HC_gene_3531_tx_23 1 - 440980 443066 . 2 1828,92 0,1995 -chrVII 440980 443066 HC_gene_3531_tx_24 1 - 440980 443066 . 2 1387,302 0,1785 -chrVII 440980 443066 HC_gene_3531_tx_25 1 - 440980 443066 . 2 999,178 0,1909 -chrVII 440980 443066 HC_gene_3531_tx_26 1 - 440980 443066 . 2 793,424 0,1663 -chrVII 440980 443066 HC_gene_3531_tx_27 1 - 440980 443066 . 2 1187,860 0,1227 -chrVII 440980 443066 HC_gene_3531_tx_28 1 - 440980 443066 . 2 1902,71 0,2016 -chrVII 440980 443307 HC_gene_3531_tx_29 1 - 440980 443307 . 1 2328 0 -chrVII 441399 443066 HC_gene_3531_tx_34 1 - 441399 443066 . 3 471,198,872 0,546,796 -chrVII 442047 443137 MC_gene_3098_tx_1 1 + 442047 443137 . 1 1091 0 -chrVII 442228 443066 HC_gene_3531_tx_35 4 - 442228 443066 . 1 839 0 -chrVII 442901 443538 HC_gene_3532_tx_1 1 - 442901 443538 . 1 638 0 -chrVII 443546 444082 HC_gene_3533_tx_1 10 - 443546 444082 . 1 537 0 -chrVII 443546 444377 HC_gene_3533_tx_2 14 - 443546 444377 . 1 832 0 -chrVII 443546 444707 HC_gene_3533_tx_3 5 - 443546 444707 . 1 1162 0 -chrVII 443546 445745 HC_gene_3533_tx_4 4 - 443546 445745 . 1 2200 0 -chrVII 443546 446175 HC_gene_3533_tx_5 39 - 443546 446175 . 1 2630 0 -chrVII 443546 446175 HC_gene_3533_tx_6 1 - 443546 446175 . 2 1340,1223 0,1407 -chrVII 444021 444460 LC_gene_3099_tx_1 1 + 444021 444460 . 1 440 0 -chrVII 444676 446374 LC_gene_3100_tx_1 1 + 444676 446374 . 1 1699 0 -chrVII 445278 446175 HC_gene_3533_tx_7 2 - 445278 446175 . 1 898 0 -chrVII 445278 446175 HC_gene_3533_tx_8 1 - 445278 446175 . 2 572,243 0,655 -chrVII 446329 447553 HC_gene_3534_tx_1 32 - 446329 447553 . 1 1225 0 -chrVII 446329 447613 HC_gene_3534_tx_2 1 - 446329 447613 . 2 873,372 0,913 -chrVII 446329 447613 HC_gene_3534_tx_3 14 - 446329 447613 . 1 1285 0 -chrVII 446329 447793 HC_gene_3534_tx_4 21 - 446329 447793 . 1 1465 0 -chrVII 446329 447793 HC_gene_3534_tx_5 1 - 446329 447793 . 2 578,840 0,625 -chrVII 446329 448127 HC_gene_3534_tx_6 14 - 446329 448127 . 1 1799 0 -chrVII 446329 448554 HC_gene_3534_tx_7 177 - 446329 448554 . 1 2226 0 -chrVII 446329 448554 HC_gene_3534_tx_8 1 - 446329 448554 . 2 662,1490 0,736 -chrVII 446329 448554 HC_gene_3534_tx_9 1 - 446329 448554 . 2 767,1375 0,851 -chrVII 446329 448554 HC_gene_3534_tx_10 1 - 446329 448554 . 2 930,1181 0,1045 -chrVII 446329 448554 HC_gene_3534_tx_11 1 - 446329 448554 . 2 924,1265 0,961 -chrVII 446329 448554 HC_gene_3534_tx_12 1 - 446329 448554 . 2 987,1163 0,1063 -chrVII 448678 449071 HC_gene_3535_tx_1 10 - 448678 449071 . 1 394 0 -chrVII 448678 449986 HC_gene_3535_tx_2 1 - 448678 449986 . 2 331,620 0,689 -chrVII 448678 449986 HC_gene_3535_tx_3 22 - 448678 449986 . 1 1309 0 -chrVII 448678 449986 HC_gene_3535_tx_4 1 - 448678 449986 . 2 830,222 0,1087 -chrVII 448678 449986 HC_gene_3535_tx_5 1 - 448678 449986 . 2 851,399 0,910 -chrVII 448788 450274 LC_gene_3101_tx_1 1 + 448788 450274 . 1 1487 0 -chrVII 450068 450462 HC_gene_3536_tx_1 19 - 450068 450462 . 1 395 0 -chrVII 450068 451564 HC_gene_3536_tx_2 2 - 450068 451564 . 1 1497 0 -chrVII 450068 451726 HC_gene_3536_tx_3 4 - 450068 451726 . 1 1659 0 -chrVII 450068 452037 HC_gene_3536_tx_4 1 - 450068 452037 . 2 1633,254 0,1716 -chrVII 450068 452037 HC_gene_3536_tx_5 1 - 450068 452037 . 1 1970 0 -chrVII 450068 452143 HC_gene_3536_tx_6 9 - 450068 452143 . 1 2076 0 -chrVII 450068 452143 HC_gene_3536_tx_7 1 - 450068 452143 . 2 585,1418 0,658 -chrVII 450068 452143 HC_gene_3536_tx_8 1 - 450068 452143 . 2 792,1177 0,899 -chrVII 450068 452143 HC_gene_3536_tx_9 1 - 450068 452143 . 2 1396,561 0,1515 -chrVII 452338 454641 HC_gene_3102_tx_1 30 + 452338 454641 . 1 2304 0 -chrVII 452338 454641 HC_gene_3102_tx_2 1 + 452338 454641 . 2 708,838 0,1466 -chrVII 452338 454641 HC_gene_3102_tx_3 1 + 452338 454641 . 2 699,1549 0,755 -chrVII 452338 454641 HC_gene_3102_tx_4 1 + 452338 454641 . 2 237,2010 0,294 -chrVII 453363 454641 HC_gene_3102_tx_5 7 + 453363 454641 . 1 1279 0 -chrVII 453865 454641 HC_gene_3102_tx_6 19 + 453865 454641 . 1 777 0 -chrVII 453955 454641 HC_gene_3102_tx_7 30 + 453955 454641 . 1 687 0 -chrVII 454215 454641 HC_gene_3102_tx_8 35 + 454215 454641 . 1 427 0 -chrVII 454525 455839 MC_gene_3537_tx_1 1 - 454525 455839 . 1 1315 0 -chrVII 454827 457098 HC_gene_3103_tx_1 1 + 454827 457098 . 2 1240,926 0,1346 -chrVII 454827 457098 HC_gene_3103_tx_2 7 + 454827 457098 . 1 2272 0 -chrVII 454827 457098 HC_gene_3103_tx_3 1 + 454827 457098 . 2 103,1514 0,758 -chrVII 454827 457193 HC_gene_3103_tx_4 12 + 454827 457193 . 1 2367 0 -chrVII 454827 457193 HC_gene_3103_tx_5 1 + 454827 457193 . 2 658,1350 0,1017 -chrVII 457074 457935 HC_gene_3538_tx_1 165 - 457074 457935 . 1 862 0 -chrVII 458079 459104 HC_gene_3104_tx_1 122 + 458079 459104 . 1 1026 0 -chrVII 458079 459104 HC_gene_3104_tx_2 1 + 458079 459104 . 2 275,679 0,347 -chrVII 458079 459104 HC_gene_3104_tx_3 1 + 458079 459104 . 2 586,385 0,641 -chrVII 458228 459104 HC_gene_3104_tx_4 33 + 458228 459104 . 1 877 0 -chrVII 458849 459700 HC_gene_3539_tx_1 17 - 458849 459700 . 1 852 0 -chrVII 458972 459700 HC_gene_3539_tx_2 21 - 458972 459700 . 1 729 0 -chrVII 459837 461482 HC_gene_3105_tx_1 16 + 459837 461482 . 1 1646 0 -chrVII 459837 461482 HC_gene_3105_tx_2 1 + 459837 461482 . 2 892,679 0,967 -chrVII 461612 462856 HC_gene_3106_tx_1 1 + 461612 462856 . 1 1245 0 -chrVII 461612 463981 HC_gene_3106_tx_2 1 + 461612 463981 . 1 2370 0 -chrVII 461880 462856 HC_gene_3106_tx_3 1 + 461880 462856 . 1 977 0 -chrVII 464185 465067 HC_gene_3107_tx_1 2 + 464185 465067 . 1 883 0 -chrVII 464447 465067 HC_gene_3107_tx_2 10 + 464447 465067 . 1 621 0 -chrVII 465731 466058 HC_gene_3108_tx_1 3 + 465731 466058 . 1 328 0 -chrVII 466717 468896 HC_gene_3109_tx_1 2 + 466717 468896 . 1 2180 0 -chrVII 467073 468896 HC_gene_3109_tx_2 5 + 467073 468896 . 1 1824 0 -chrVII 467364 468896 HC_gene_3109_tx_3 4 + 467364 468896 . 1 1533 0 -chrVII 468306 468896 HC_gene_3109_tx_4 26 + 468306 468896 . 1 591 0 -chrVII 468967 471010 MC_gene_3110_tx_1 1 + 468967 471010 . 1 2044 0 -chrVII 468993 469368 HC_gene_3540_tx_1 9 - 468993 469368 . 1 376 0 -chrVII 468993 472429 HC_gene_3540_tx_2 3 - 468993 472429 . 1 3437 0 -chrVII 468993 472429 HC_gene_3540_tx_3 1 - 468993 472429 . 2 1993,1098 0,2339 -chrVII 468993 472429 HC_gene_3540_tx_4 1 - 468993 472429 . 2 2285,1022 0,2415 -chrVII 468993 472429 HC_gene_3540_tx_5 1 - 468993 472429 . 2 774,2183 0,1254 -chrVII 472779 475284 HC_gene_3541_tx_1 1 - 472779 475284 . 1 2506 0 -chrVII 472817 474383 HC_gene_3111_tx_1 199 + 472817 474383 . 1 1567 0 -chrVII 472817 474383 HC_gene_3111_tx_2 1 + 472817 474383 . 2 689,748 0,819 -chrVII 472817 474383 HC_gene_3111_tx_3 1 + 472817 474383 . 2 341,751 0,816 -chrVII 472817 474383 HC_gene_3111_tx_4 1 + 472817 474383 . 2 90,1077 0,490 -chrVII 472817 474383 HC_gene_3111_tx_5 1 + 472817 474383 . 2 864,459 0,1108 -chrVII 473210 474383 HC_gene_3111_tx_6 20 + 473210 474383 . 1 1174 0 -chrVII 473522 474383 HC_gene_3111_tx_7 27 + 473522 474383 . 1 862 0 -chrVII 473522 474383 HC_gene_3111_tx_8 1 + 473522 474383 . 2 709,52 0,810 -chrVII 473611 474383 HC_gene_3111_tx_9 17 + 473611 474383 . 1 773 0 -chrVII 474293 475284 HC_gene_3541_tx_2 1 - 474293 475284 . 2 38,909 0,83 -chrVII 474360 474735 HC_gene_3541_tx_15 75 - 474360 474735 . 1 376 0 -chrVII 474360 474950 HC_gene_3541_tx_16 83 - 474360 474950 . 1 591 0 -chrVII 474360 474950 HC_gene_3541_tx_17 1 - 474360 474950 . 2 301,172 0,419 -chrVII 474360 475108 HC_gene_3541_tx_3 72 - 474360 475108 . 1 749 0 -chrVII 474360 475108 HC_gene_3541_tx_4 1 - 474360 475108 . 2 142,194 0,555 -chrVII 474360 475108 HC_gene_3541_tx_5 1 - 474360 475108 . 2 366,143 0,606 -chrVII 474360 475182 HC_gene_3541_tx_6 18 - 474360 475182 . 1 823 0 -chrVII 474360 475284 HC_gene_3541_tx_7 380 - 474360 475284 . 1 925 0 -chrVII 474360 475284 HC_gene_3541_tx_8 1 - 474360 475284 . 2 688,140 0,785 -chrVII 474360 475284 HC_gene_3541_tx_9 1 - 474360 475284 . 2 736,140 0,785 -chrVII 474360 475284 HC_gene_3541_tx_10 1 - 474360 475284 . 2 152,709 0,216 -chrVII 474360 475284 HC_gene_3541_tx_11 1 - 474360 475284 . 2 626,223 0,702 -chrVII 474360 475284 HC_gene_3541_tx_12 1 - 474360 475284 . 2 345,531 0,394 -chrVII 474360 475284 HC_gene_3541_tx_13 1 - 474360 475284 . 2 84,782 0,143 -chrVII 474360 475284 HC_gene_3541_tx_14 1 - 474360 475284 . 2 84,804 0,121 -chrVII 475456 475708 MC_gene_3542_tx_1 1 - 475456 475708 . 1 253 0 -chrVII 475494 476268 HC_gene_3112_tx_1 63 + 475494 476268 . 1 775 0 -chrVII 475530 476012 MC_gene_3543_tx_1 1 - 475530 476012 . 1 483 0 -chrVII 476169 476597 HC_gene_3544_tx_1 17 - 476169 476597 . 1 429 0 -chrVII 476169 476666 HC_gene_3544_tx_2 15 - 476169 476666 . 1 498 0 -chrVII 476169 476814 HC_gene_3544_tx_3 15 - 476169 476814 . 1 646 0 -chrVII 476169 476899 HC_gene_3544_tx_4 8 - 476169 476899 . 1 731 0 -chrVII 476169 476972 HC_gene_3544_tx_5 14 - 476169 476972 . 1 804 0 -chrVII 476169 477182 HC_gene_3544_tx_6 7 - 476169 477182 . 1 1014 0 -chrVII 476169 477261 HC_gene_3544_tx_7 32 - 476169 477261 . 1 1093 0 -chrVII 476169 477523 HC_gene_3544_tx_8 14 - 476169 477523 . 1 1355 0 -chrVII 476169 477635 HC_gene_3544_tx_9 9 - 476169 477635 . 1 1467 0 -chrVII 476169 477743 HC_gene_3544_tx_10 8 - 476169 477743 . 1 1575 0 -chrVII 476169 477743 HC_gene_3544_tx_11 1 - 476169 477743 . 2 948,325 0,1250 -chrVII 476169 477848 HC_gene_3544_tx_12 3 - 476169 477848 . 1 1680 0 -chrVII 476169 478028 HC_gene_3544_tx_13 7 - 476169 478028 . 1 1860 0 -chrVII 476169 478028 HC_gene_3544_tx_14 1 - 476169 478028 . 2 1258,535 0,1325 -chrVII 476169 478208 HC_gene_3544_tx_15 8 - 476169 478208 . 1 2040 0 -chrVII 476169 478504 HC_gene_3544_tx_16 10 - 476169 478504 . 1 2336 0 -chrVII 476169 478728 HC_gene_3544_tx_17 39 - 476169 478728 . 1 2560 0 -chrVII 476169 478728 HC_gene_3544_tx_18 1 - 476169 478728 . 2 470,1987 0,573 -chrVII 476169 478728 HC_gene_3544_tx_19 1 - 476169 478728 . 2 1663,139 0,2421 -chrVII 479244 479626 HC_gene_3545_tx_1 1 - 479244 479626 . 1 383 0 -chrVII 479244 479762 HC_gene_3545_tx_2 3 - 479244 479762 . 1 519 0 -chrVII 479244 480056 HC_gene_3545_tx_3 1 - 479244 480056 . 1 813 0 -chrVII 479244 480398 HC_gene_3545_tx_9 1 - 479244 480398 . 1 1155 0 -chrVII 479244 481415 HC_gene_3545_tx_10 4 - 479244 481415 . 1 2172 0 -chrVII 479244 482258 HC_gene_3545_tx_11 1 - 479244 482258 . 1 3015 0 -chrVII 479244 482903 HC_gene_3545_tx_12 1 - 479244 482903 . 1 3660 0 -chrVII 479394 479626 HC_gene_3545_tx_427 153 - 479394 479626 . 1 233 0 -chrVII 479394 479762 HC_gene_3545_tx_428 1810 - 479394 479762 . 1 369 0 -chrVII 479394 479762 HC_gene_3545_tx_429 1 - 479394 479762 . 2 116,202 0,167 -chrVII 479394 479762 HC_gene_3545_tx_430 1 - 479394 479762 . 2 240,73 0,296 -chrVII 479394 479762 HC_gene_3545_tx_431 1 - 479394 479762 . 2 240,49 0,320 -chrVII 479394 479882 HC_gene_3545_tx_432 1 - 479394 479882 . 2 433,121 0,368 -chrVII 479394 480056 HC_gene_3545_tx_4 1208 - 479394 480056 . 1 663 0 -chrVII 479394 480056 HC_gene_3545_tx_5 2 - 479394 480056 . 2 583,25 0,638 -chrVII 479394 480056 HC_gene_3545_tx_6 1 - 479394 480056 . 2 302,316 0,347 -chrVII 479394 480056 HC_gene_3545_tx_7 1 - 479394 480056 . 2 403,149 0,514 -chrVII 479394 480086 HC_gene_3545_tx_8 1 - 479394 480086 . 2 300,336 0,357 -chrVII 479394 480320 HC_gene_3545_tx_13 218 - 479394 480320 . 1 927 0 -chrVII 479394 480320 HC_gene_3545_tx_14 1 - 479394 480320 . 2 689,185 0,742 -chrVII 479394 480320 HC_gene_3545_tx_15 1 - 479394 480320 . 2 712,88 0,839 -chrVII 479394 480398 HC_gene_3545_tx_16 521 - 479394 480398 . 1 1005 0 -chrVII 479394 480398 HC_gene_3545_tx_17 1 - 479394 480398 . 2 651,223 0,782 -chrVII 479394 480398 HC_gene_3545_tx_18 1 - 479394 480398 . 2 233,547 0,458 -chrVII 479394 480398 HC_gene_3545_tx_19 1 - 479394 480398 . 2 897,58 0,947 -chrVII 479394 480398 HC_gene_3545_tx_20 1 - 479394 480398 . 2 696,238 0,767 -chrVII 479394 480398 HC_gene_3545_tx_21 1 - 479394 480398 . 2 612,197 0,808 -chrVII 479394 480398 HC_gene_3545_tx_22 1 - 479394 480398 . 2 100,838 0,167 -chrVII 479394 480546 HC_gene_3545_tx_23 380 - 479394 480546 . 1 1153 0 -chrVII 479394 480546 HC_gene_3545_tx_24 1 - 479394 480546 . 2 640,453 0,700 -chrVII 479394 480546 HC_gene_3545_tx_25 1 - 479394 480546 . 2 918,83 0,1070 -chrVII 479394 480546 HC_gene_3545_tx_26 1 - 479394 480546 . 2 715,345 0,808 -chrVII 479394 480546 HC_gene_3545_tx_27 1 - 479394 480546 . 2 501,317 0,836 -chrVII 479394 480546 HC_gene_3545_tx_28 1 - 479394 480546 . 2 729,291 0,862 -chrVII 479394 480546 HC_gene_3545_tx_29 1 - 479394 480546 . 2 904,172 0,981 -chrVII 479394 480546 HC_gene_3545_tx_30 1 - 479394 480546 . 2 861,179 0,974 -chrVII 479394 480776 HC_gene_3545_tx_31 1 - 479394 480776 . 2 841,457 0,926 -chrVII 479394 480821 HC_gene_3545_tx_32 1 - 479394 480821 . 2 912,430 0,998 -chrVII 479394 480865 HC_gene_3545_tx_33 1 - 479394 480865 . 2 897,481 0,991 -chrVII 479394 480925 HC_gene_3545_tx_34 1 - 479394 480925 . 2 510,624 0,908 -chrVII 479394 480989 HC_gene_3545_tx_35 1 - 479394 480989 . 2 597,592 0,1004 -chrVII 479394 480990 HC_gene_3545_tx_36 1 - 479394 480990 . 2 551,455 0,1142 -chrVII 479394 480998 HC_gene_3545_tx_37 1 - 479394 480998 . 2 608,607 0,998 -chrVII 479394 480999 HC_gene_3545_tx_38 1 - 479394 480999 . 3 510,152,608 0,587,998 -chrVII 479394 481069 HC_gene_3545_tx_39 1 - 479394 481069 . 2 930,672 0,1004 -chrVII 479394 481230 HC_gene_3545_tx_40 1 - 479394 481230 . 2 619,695 0,1142 -chrVII 479394 481267 HC_gene_3545_tx_41 1 - 479394 481267 . 2 935,876 0,998 -chrVII 479394 481388 HC_gene_3545_tx_42 1 - 479394 481388 . 2 879,997 0,998 -chrVII 479394 481388 HC_gene_3545_tx_43 1 - 479394 481388 . 2 935,997 0,998 -chrVII 479394 481415 HC_gene_3545_tx_44 2441 - 479394 481415 . 1 2022 0 -chrVII 479394 481415 HC_gene_3545_tx_45 1 - 479394 481415 . 2 763,925 0,1097 -chrVII 479394 481415 HC_gene_3545_tx_46 1 - 479394 481415 . 2 1654,239 0,1783 -chrVII 479394 481415 HC_gene_3545_tx_47 1 - 479394 481415 . 2 1442,517 0,1505 -chrVII 479394 481415 HC_gene_3545_tx_48 1 - 479394 481415 . 2 955,952 0,1070 -chrVII 479394 481415 HC_gene_3545_tx_49 1 - 479394 481415 . 2 109,1823 0,199 -chrVII 479394 481415 HC_gene_3545_tx_50 2 - 479394 481415 . 2 1297,652 0,1370 -chrVII 479394 481415 HC_gene_3545_tx_51 1 - 479394 481415 . 2 1139,541 0,1481 -chrVII 479394 481415 HC_gene_3545_tx_52 1 - 479394 481415 . 2 1215,727 0,1295 -chrVII 479394 481415 HC_gene_3545_tx_53 1 - 479394 481415 . 2 594,504 0,1518 -chrVII 479394 481415 HC_gene_3545_tx_54 1 - 479394 481415 . 2 846,256 0,1766 -chrVII 479394 481415 HC_gene_3545_tx_55 1 - 479394 481415 . 3 583,704,402 0,658,1620 -chrVII 479394 481415 HC_gene_3545_tx_56 1 - 479394 481415 . 2 1392,376 0,1646 -chrVII 479394 481415 HC_gene_3545_tx_57 1 - 479394 481415 . 2 1809,22 0,2000 -chrVII 479394 481415 HC_gene_3545_tx_58 2 - 479394 481415 . 2 935,1002 0,1020 -chrVII 479394 481415 HC_gene_3545_tx_59 1 - 479394 481415 . 2 214,1620 0,402 -chrVII 479394 481415 HC_gene_3545_tx_60 1 - 479394 481415 . 2 1392,571 0,1451 -chrVII 479394 481415 HC_gene_3545_tx_61 1 - 479394 481415 . 2 1264,697 0,1325 -chrVII 479394 481415 HC_gene_3545_tx_62 1 - 479394 481415 . 3 935,174,754 0,998,1268 -chrVII 479394 481415 HC_gene_3545_tx_63 1 - 479394 481415 . 2 985,952 0,1070 -chrVII 479394 481415 HC_gene_3545_tx_64 1 - 479394 481415 . 2 955,973 0,1049 -chrVII 479394 481415 HC_gene_3545_tx_65 1 - 479394 481415 . 2 1114,798 0,1224 -chrVII 479394 481415 HC_gene_3545_tx_66 1 - 479394 481415 . 2 1152,766 0,1256 -chrVII 479394 481415 HC_gene_3545_tx_67 1 - 479394 481415 . 2 528,733 0,1289 -chrVII 479394 481415 HC_gene_3545_tx_68 1 - 479394 481415 . 2 583,1292 0,730 -chrVII 479394 481415 HC_gene_3545_tx_69 1 - 479394 481415 . 2 763,1196 0,826 -chrVII 479394 481415 HC_gene_3545_tx_70 1 - 479394 481415 . 2 510,682 0,1340 -chrVII 479394 481415 HC_gene_3545_tx_71 1 - 479394 481415 . 2 857,643 0,1379 -chrVII 479394 481415 HC_gene_3545_tx_72 1 - 479394 481415 . 2 1333,541 0,1481 -chrVII 479394 481415 HC_gene_3545_tx_73 1 - 479394 481415 . 2 1564,307 0,1715 -chrVII 479394 481415 HC_gene_3545_tx_74 1 - 479394 481415 . 2 1536,430 0,1592 -chrVII 479394 481415 HC_gene_3545_tx_75 1 - 479394 481415 . 2 538,1240 0,782 -chrVII 479394 481415 HC_gene_3545_tx_76 1 - 479394 481415 . 2 1529,280 0,1742 -chrVII 479394 481415 HC_gene_3545_tx_77 1 - 479394 481415 . 2 996,376 0,1646 -chrVII 479394 481415 HC_gene_3545_tx_78 1 - 479394 481415 . 2 131,1411 0,611 -chrVII 479394 481415 HC_gene_3545_tx_79 1 - 479394 481415 . 2 1462,295 0,1727 -chrVII 479394 481415 HC_gene_3545_tx_80 1 - 479394 481415 . 2 968,990 0,1032 -chrVII 479394 481415 HC_gene_3545_tx_81 1 - 479394 481415 . 2 1240,532 0,1490 -chrVII 479394 481415 HC_gene_3545_tx_82 1 - 479394 481415 . 2 1139,812 0,1210 -chrVII 479394 481415 HC_gene_3545_tx_83 1 - 479394 481415 . 2 1172,792 0,1230 -chrVII 479394 481415 HC_gene_3545_tx_84 1 - 479394 481415 . 2 712,1072 0,950 -chrVII 479394 481415 HC_gene_3545_tx_85 1 - 479394 481415 . 2 774,1075 0,947 -chrVII 479394 481415 HC_gene_3545_tx_86 1 - 479394 481415 . 2 246,1538 0,484 -chrVII 479394 481415 HC_gene_3545_tx_87 1 - 479394 481415 . 2 868,970 0,1052 -chrVII 479394 481415 HC_gene_3545_tx_88 1 - 479394 481415 . 2 846,664 0,1358 -chrVII 479394 481415 HC_gene_3545_tx_89 1 - 479394 481415 . 2 930,1041 0,981 -chrVII 479394 481415 HC_gene_3545_tx_90 1 - 479394 481415 . 2 706,817 0,1205 -chrVII 479394 481415 HC_gene_3545_tx_91 1 - 479394 481415 . 2 582,472 0,1550 -chrVII 479394 481415 HC_gene_3545_tx_92 1 - 479394 481415 . 2 926,504 0,1518 -chrVII 479394 481415 HC_gene_3545_tx_93 1 - 479394 481415 . 2 587,517 0,1505 -chrVII 479394 481415 HC_gene_3545_tx_94 1 - 479394 481415 . 2 233,1153 0,869 -chrVII 479394 481415 HC_gene_3545_tx_95 1 - 479394 481415 . 2 1626,326 0,1696 -chrVII 479394 481415 HC_gene_3545_tx_96 1 - 479394 481415 . 2 1044,754 0,1268 -chrVII 479394 481415 HC_gene_3545_tx_97 1 - 479394 481415 . 2 1598,256 0,1766 -chrVII 479394 481415 HC_gene_3545_tx_98 1 - 479394 481415 . 2 1809,124 0,1898 -chrVII 479394 481415 HC_gene_3545_tx_99 1 - 479394 481415 . 2 980,990 0,1032 -chrVII 479394 481415 HC_gene_3545_tx_100 1 - 479394 481415 . 2 955,970 0,1052 -chrVII 479394 481415 HC_gene_3545_tx_101 1 - 479394 481415 . 2 1796,55 0,1967 -chrVII 479394 481415 HC_gene_3545_tx_102 1 - 479394 481415 . 3 946,628,317 0,998,1705 -chrVII 479394 481415 HC_gene_3545_tx_103 1 - 479394 481415 . 2 1587,268 0,1754 -chrVII 479394 481415 HC_gene_3545_tx_104 1 - 479394 481415 . 2 501,454 0,1568 -chrVII 479394 481415 HC_gene_3545_tx_105 2 - 479394 481415 . 2 1134,802 0,1220 -chrVII 479394 481415 HC_gene_3545_tx_106 1 - 479394 481415 . 2 1059,796 0,1226 -chrVII 479394 481415 HC_gene_3545_tx_107 1 - 479394 481415 . 2 327,472 0,1550 -chrVII 479394 481415 HC_gene_3545_tx_108 1 - 479394 481415 . 2 1546,388 0,1634 -chrVII 479394 481415 HC_gene_3545_tx_109 1 - 479394 481415 . 2 1016,925 0,1097 -chrVII 479394 481415 HC_gene_3545_tx_110 1 - 479394 481415 . 2 1615,289 0,1733 -chrVII 479394 481415 HC_gene_3545_tx_111 1 - 479394 481415 . 2 1191,532 0,1490 -chrVII 479394 481415 HC_gene_3545_tx_112 1 - 479394 481415 . 2 1119,778 0,1244 -chrVII 479394 481415 HC_gene_3545_tx_113 1 - 479394 481415 . 2 1226,682 0,1340 -chrVII 479394 481415 HC_gene_3545_tx_114 1 - 479394 481415 . 2 983,148 0,1874 -chrVII 479394 481415 HC_gene_3545_tx_115 1 - 479394 481415 . 2 968,963 0,1059 -chrVII 479394 481415 HC_gene_3545_tx_116 1 - 479394 481415 . 2 739,915 0,1107 -chrVII 479394 481415 HC_gene_3545_tx_117 1 - 479394 481415 . 2 897,943 0,1079 -chrVII 479394 481415 HC_gene_3545_tx_118 1 - 479394 481415 . 2 796,958 0,1064 -chrVII 479394 481415 HC_gene_3545_tx_119 1 - 479394 481415 . 2 100,1755 0,267 -chrVII 479394 481415 HC_gene_3545_tx_120 1 - 479394 481415 . 2 1309,532 0,1490 -chrVII 479394 481415 HC_gene_3545_tx_121 1 - 479394 481415 . 2 1016,952 0,1070 -chrVII 479394 481415 HC_gene_3545_tx_122 1 - 479394 481415 . 3 949,821,124 0,1020,1898 -chrVII 479394 481415 HC_gene_3545_tx_123 1 - 479394 481415 . 2 844,925 0,1097 -chrVII 479394 481415 HC_gene_3545_tx_124 1 - 479394 481415 . 2 968,832 0,1190 -chrVII 479394 481415 HC_gene_3545_tx_125 1 - 479394 481415 . 2 1333,571 0,1451 -chrVII 479394 481415 HC_gene_3545_tx_126 1 - 479394 481415 . 2 946,963 0,1059 -chrVII 479394 481415 HC_gene_3545_tx_127 1 - 479394 481415 . 2 1059,733 0,1289 -chrVII 479394 481415 HC_gene_3545_tx_128 1 - 479394 481415 . 2 912,1075 0,947 -chrVII 479394 481415 HC_gene_3545_tx_129 1 - 479394 481415 . 2 903,709 0,1313 -chrVII 479394 481415 HC_gene_3545_tx_130 1 - 479394 481415 . 2 968,994 0,1028 -chrVII 479394 481415 HC_gene_3545_tx_131 1 - 479394 481415 . 2 1090,796 0,1226 -chrVII 479394 481415 HC_gene_3545_tx_132 1 - 479394 481415 . 2 1016,943 0,1079 -chrVII 479394 481415 HC_gene_3545_tx_133 1 - 479394 481415 . 2 1228,706 0,1316 -chrVII 479394 481415 HC_gene_3545_tx_134 1 - 479394 481415 . 2 1131,727 0,1295 -chrVII 479394 481415 HC_gene_3545_tx_135 1 - 479394 481415 . 2 597,1201 0,821 -chrVII 479394 481415 HC_gene_3545_tx_136 1 - 479394 481415 . 2 980,895 0,1127 -chrVII 479394 481415 HC_gene_3545_tx_137 1 - 479394 481415 . 2 921,1002 0,1020 -chrVII 479394 481415 HC_gene_3545_tx_138 1 - 479394 481415 . 2 959,727 0,1295 -chrVII 479394 481415 HC_gene_3545_tx_139 1 - 479394 481415 . 2 1021,733 0,1289 -chrVII 479394 481415 HC_gene_3545_tx_140 1 - 479394 481415 . 2 767,256 0,1766 -chrVII 479394 481415 HC_gene_3545_tx_141 2 - 479394 481415 . 2 946,1002 0,1020 -chrVII 479394 481415 HC_gene_3545_tx_142 1 - 479394 481415 . 2 955,1002 0,1020 -chrVII 479394 481415 HC_gene_3545_tx_143 1 - 479394 481415 . 2 538,1196 0,826 -chrVII 479394 481415 HC_gene_3545_tx_144 1 - 479394 481415 . 2 1345,307 0,1715 -chrVII 479394 481415 HC_gene_3545_tx_145 1 - 479394 481415 . 2 576,709 0,1313 -chrVII 479394 481415 HC_gene_3545_tx_146 1 - 479394 481415 . 2 1401,367 0,1655 -chrVII 479394 481415 HC_gene_3545_tx_147 1 - 479394 481415 . 2 1262,532 0,1490 -chrVII 479394 481415 HC_gene_3545_tx_148 1 - 479394 481415 . 2 1119,812 0,1210 -chrVII 479394 481415 HC_gene_3545_tx_149 1 - 479394 481415 . 2 727,472 0,1550 -chrVII 479394 481415 HC_gene_3545_tx_150 1 - 479394 481415 . 2 1416,376 0,1646 -chrVII 479394 481415 HC_gene_3545_tx_151 1 - 479394 481415 . 2 912,1048 0,974 -chrVII 479394 481415 HC_gene_3545_tx_152 1 - 479394 481415 . 2 1228,646 0,1376 -chrVII 479394 481415 HC_gene_3545_tx_153 1 - 479394 481415 . 3 1059,206,571 0,1127,1451 -chrVII 479394 481415 HC_gene_3545_tx_154 1 - 479394 481415 . 2 501,367 0,1655 -chrVII 479394 481415 HC_gene_3545_tx_155 1 - 479394 481415 . 3 1020,579,196 0,1088,1826 -chrVII 479394 481415 HC_gene_3545_tx_156 2 - 479394 481415 . 2 1157,812 0,1210 -chrVII 479394 481415 HC_gene_3545_tx_157 1 - 479394 481415 . 2 576,1093 0,929 -chrVII 479394 481415 HC_gene_3545_tx_158 1 - 479394 481415 . 2 996,934 0,1088 -chrVII 479394 481415 HC_gene_3545_tx_159 1 - 479394 481415 . 2 992,979 0,1043 -chrVII 479394 481415 HC_gene_3545_tx_160 1 - 479394 481415 . 2 1834,74 0,1948 -chrVII 479394 481415 HC_gene_3545_tx_161 2 - 479394 481415 . 2 754,1204 0,818 -chrVII 479394 481415 HC_gene_3545_tx_162 1 - 479394 481415 . 3 946,120,637 0,1052,1385 -chrVII 479394 481415 HC_gene_3545_tx_163 1 - 479394 481415 . 2 1316,652 0,1370 -chrVII 479394 481415 HC_gene_3545_tx_164 1 - 479394 481415 . 3 724,458,697 0,808,1325 -chrVII 479394 481415 HC_gene_3545_tx_165 1 - 479394 481415 . 2 654,1240 0,782 -chrVII 479394 481415 HC_gene_3545_tx_166 1 - 479394 481415 . 2 712,1196 0,826 -chrVII 479394 481415 HC_gene_3545_tx_167 1 - 479394 481415 . 2 1191,754 0,1268 -chrVII 479394 481415 HC_gene_3545_tx_168 1 - 479394 481415 . 2 1536,317 0,1705 -chrVII 479394 481415 HC_gene_3545_tx_169 1 - 479394 481415 . 2 531,1435 0,587 -chrVII 479394 481415 HC_gene_3545_tx_170 1 - 479394 481415 . 2 849,688 0,1334 -chrVII 479394 481415 HC_gene_3545_tx_171 1 - 479394 481415 . 2 1020,778 0,1244 -chrVII 479394 481415 HC_gene_3545_tx_172 1 - 479394 481415 . 2 1276,652 0,1370 -chrVII 479394 481415 HC_gene_3545_tx_173 1 - 479394 481415 . 2 809,970 0,1052 -chrVII 479394 481415 HC_gene_3545_tx_174 1 - 479394 481415 . 2 763,1214 0,808 -chrVII 479394 481415 HC_gene_3545_tx_175 1 - 479394 481415 . 2 1172,796 0,1226 -chrVII 479394 481415 HC_gene_3545_tx_176 1 - 479394 481415 . 2 1153,798 0,1224 -chrVII 479394 481415 HC_gene_3545_tx_177 1 - 479394 481415 . 2 1236,706 0,1316 -chrVII 479394 481415 HC_gene_3545_tx_178 1 - 479394 481415 . 2 104,1855 0,167 -chrVII 479394 481415 HC_gene_3545_tx_179 1 - 479394 481415 . 2 240,1564 0,458 -chrVII 479394 481415 HC_gene_3545_tx_180 1 - 479394 481415 . 2 975,1002 0,1020 -chrVII 479394 481415 HC_gene_3545_tx_181 1 - 479394 481415 . 2 1075,838 0,1184 -chrVII 479394 481415 HC_gene_3545_tx_182 1 - 479394 481415 . 2 177,1214 0,808 -chrVII 479394 481415 HC_gene_3545_tx_183 1 - 479394 481415 . 2 160,1444 0,578 -chrVII 479394 481415 HC_gene_3545_tx_184 1 - 479394 481415 . 2 1016,754 0,1268 -chrVII 479394 481415 HC_gene_3545_tx_185 1 - 479394 481415 . 2 1481,472 0,1550 -chrVII 479394 481415 HC_gene_3545_tx_186 1 - 479394 481415 . 2 1779,22 0,2000 -chrVII 479394 481415 HC_gene_3545_tx_187 1 - 479394 481415 . 2 1799,148 0,1874 -chrVII 479394 481415 HC_gene_3545_tx_188 1 - 479394 481415 . 2 1191,637 0,1385 -chrVII 479394 481415 HC_gene_3545_tx_189 1 - 479394 481415 . 2 1144,763 0,1259 -chrVII 479394 481415 HC_gene_3545_tx_190 1 - 479394 481415 . 2 188,1762 0,260 -chrVII 479394 481415 HC_gene_3545_tx_191 1 - 479394 481415 . 2 1131,351 0,1671 -chrVII 479394 481415 HC_gene_3545_tx_192 1 - 479394 481415 . 2 619,1297 0,725 -chrVII 479394 481415 HC_gene_3545_tx_193 1 - 479394 481415 . 2 1309,637 0,1385 -chrVII 479394 481415 HC_gene_3545_tx_194 1 - 479394 481415 . 2 1087,691 0,1331 -chrVII 479394 481415 HC_gene_3545_tx_195 1 - 479394 481415 . 2 1191,766 0,1256 -chrVII 479394 481415 HC_gene_3545_tx_196 1 - 479394 481415 . 2 296,1612 0,410 -chrVII 479394 481415 HC_gene_3545_tx_197 1 - 479394 481415 . 2 1318,55 0,1967 -chrVII 479394 481415 HC_gene_3545_tx_198 1 - 479394 481415 . 2 1259,517 0,1505 -chrVII 479394 481415 HC_gene_3545_tx_199 1 - 479394 481415 . 2 1059,637 0,1385 -chrVII 479394 481415 HC_gene_3545_tx_200 1 - 479394 481415 . 2 1425,532 0,1490 -chrVII 479394 481415 HC_gene_3545_tx_201 1 - 479394 481415 . 2 1137,797 0,1225 -chrVII 479394 481475 HC_gene_3545_tx_202 1 - 479394 481475 . 2 1638,61 0,2021 -chrVII 479394 481484 HC_gene_3545_tx_203 1 - 479394 481484 . 2 1897,70 0,2021 -chrVII 479394 481496 HC_gene_3545_tx_204 1 - 479394 481496 . 2 1290,91 0,2012 -chrVII 479394 481557 HC_gene_3545_tx_205 1 - 479394 481557 . 2 886,1160 0,1004 -chrVII 479394 481574 HC_gene_3545_tx_206 1 - 479394 481574 . 2 1867,160 0,2021 -chrVII 479394 481601 HC_gene_3545_tx_207 1 - 479394 481601 . 2 654,1210 0,998 -chrVII 479394 481608 HC_gene_3545_tx_208 1 - 479394 481608 . 2 1075,1063 0,1152 -chrVII 479394 481619 HC_gene_3545_tx_209 1 - 479394 481619 . 2 1944,205 0,2021 -chrVII 479394 481622 HC_gene_3545_tx_210 1 - 479394 481622 . 2 2032,208 0,2021 -chrVII 479394 481666 HC_gene_3545_tx_211 1 - 479394 481666 . 2 844,1275 0,998 -chrVII 479394 481670 HC_gene_3545_tx_212 1 - 479394 481670 . 2 2179,256 0,2021 -chrVII 479394 481679 HC_gene_3545_tx_213 1 - 479394 481679 . 3 1234,699,265 0,1411,2021 -chrVII 479394 481679 HC_gene_3545_tx_214 1 - 479394 481679 . 2 1165,265 0,2021 -chrVII 479394 481711 HC_gene_3545_tx_215 1 - 479394 481711 . 2 310,1176 0,1142 -chrVII 479394 481773 HC_gene_3545_tx_216 1 - 479394 481773 . 2 2311,359 0,2021 -chrVII 479394 481795 HC_gene_3545_tx_217 1 - 479394 481795 . 3 298,491,1404 0,444,998 -chrVII 479394 481881 HC_gene_3545_tx_218 1 - 479394 481881 . 2 1936,476 0,2012 -chrVII 479394 481894 HC_gene_3545_tx_219 1 - 479394 481894 . 2 908,1359 0,1142 -chrVII 479394 482048 HC_gene_3545_tx_220 75 - 479394 482048 . 1 2655 0 -chrVII 479394 482048 HC_gene_3545_tx_221 1 - 479394 482048 . 2 1630,805 0,1850 -chrVII 479394 482048 HC_gene_3545_tx_222 1 - 479394 482048 . 2 1562,796 0,1859 -chrVII 479394 482048 HC_gene_3545_tx_223 1 - 479394 482048 . 2 1503,872 0,1783 -chrVII 479394 482048 HC_gene_3545_tx_224 1 - 479394 482048 . 2 948,796 0,1859 -chrVII 479394 482048 HC_gene_3545_tx_225 1 - 479394 482048 . 2 1493,913 0,1742 -chrVII 479394 482048 HC_gene_3545_tx_226 1 - 479394 482048 . 2 1119,1421 0,1234 -chrVII 479394 482048 HC_gene_3545_tx_227 1 - 479394 482048 . 2 1333,1021 0,1634 -chrVII 479394 482048 HC_gene_3545_tx_228 1 - 479394 482048 . 2 1135,1436 0,1219 -chrVII 479394 482048 HC_gene_3545_tx_229 1 - 479394 482048 . 2 1564,976 0,1679 -chrVII 479394 482144 HC_gene_3545_tx_230 11 - 479394 482144 . 1 2751 0 -chrVII 479394 482144 HC_gene_3545_tx_231 1 - 479394 482144 . 2 1548,892 0,1859 -chrVII 479394 482144 HC_gene_3545_tx_232 1 - 479394 482144 . 3 1630,341,319 0,1691,2432 -chrVII 479394 482144 HC_gene_3545_tx_233 1 - 479394 482144 . 2 1160,1541 0,1210 -chrVII 479394 482144 HC_gene_3545_tx_234 1 - 479394 482144 . 2 1481,1060 0,1691 -chrVII 479394 482144 HC_gene_3545_tx_235 1 - 479394 482144 . 2 1282,697 0,2054 -chrVII 479394 482217 HC_gene_3545_tx_236 1 - 479394 482217 . 2 904,1820 0,1004 -chrVII 479394 482221 HC_gene_3545_tx_237 1 - 479394 482221 . 2 1075,1676 0,1152 -chrVII 479394 482258 HC_gene_3545_tx_238 131 - 479394 482258 . 1 2865 0 -chrVII 479394 482258 HC_gene_3545_tx_239 1 - 479394 482258 . 2 479,2308 0,557 -chrVII 479394 482258 HC_gene_3545_tx_240 1 - 479394 482258 . 2 531,2227 0,638 -chrVII 479394 482258 HC_gene_3545_tx_241 1 - 479394 482258 . 2 1392,1384 0,1481 -chrVII 479394 482258 HC_gene_3545_tx_242 1 - 479394 482258 . 2 1260,1454 0,1411 -chrVII 479394 482258 HC_gene_3545_tx_243 1 - 479394 482258 . 2 1399,1315 0,1550 -chrVII 479394 482258 HC_gene_3545_tx_244 1 - 479394 482258 . 2 1525,1174 0,1691 -chrVII 479394 482258 HC_gene_3545_tx_245 1 - 479394 482258 . 2 1877,251 0,2614 -chrVII 479394 482258 HC_gene_3545_tx_246 1 - 479394 482258 . 2 2187,601 0,2264 -chrVII 479394 482258 HC_gene_3545_tx_247 1 - 479394 482258 . 6 980,99,233,283,324,316 0,1036,1190,1568,1948,2549 -chrVII 479394 482258 HC_gene_3545_tx_248 1 - 479394 482258 . 2 1228,1549 0,1316 -chrVII 479394 482258 HC_gene_3545_tx_249 1 - 479394 482258 . 2 1683,784 0,2081 -chrVII 479394 482258 HC_gene_3545_tx_250 1 - 479394 482258 . 2 1282,1540 0,1325 -chrVII 479394 482258 HC_gene_3545_tx_251 1 - 479394 482258 . 2 1862,486 0,2379 -chrVII 479394 482258 HC_gene_3545_tx_252 1 - 479394 482258 . 2 1172,1641 0,1224 -chrVII 479394 482258 HC_gene_3545_tx_253 1 - 479394 482258 . 2 2139,610 0,2255 -chrVII 479394 482258 HC_gene_3545_tx_254 1 - 479394 482258 . 2 1596,1210 0,1655 -chrVII 479394 482258 HC_gene_3545_tx_255 1 - 479394 482258 . 2 921,1231 0,1634 -chrVII 479394 482258 HC_gene_3545_tx_256 1 - 479394 482258 . 2 1794,775 0,2090 -chrVII 479394 482258 HC_gene_3545_tx_257 1 - 479394 482258 . 3 1075,118,530 0,1176,2335 -chrVII 479394 482407 HC_gene_3545_tx_258 27 - 479394 482407 . 1 3014 0 -chrVII 479394 482407 HC_gene_3545_tx_259 1 - 479394 482407 . 2 1587,326 0,2688 -chrVII 479394 482407 HC_gene_3545_tx_260 1 - 479394 482407 . 2 1205,447 0,2567 -chrVII 479394 482407 HC_gene_3545_tx_261 1 - 479394 482407 . 2 1119,1793 0,1221 -chrVII 479394 482407 HC_gene_3545_tx_262 1 - 479394 482407 . 2 1536,1359 0,1655 -chrVII 479394 482407 HC_gene_3545_tx_263 1 - 479394 482407 . 2 1663,1047 0,1967 -chrVII 479394 482459 HC_gene_3545_tx_264 169 - 479394 482459 . 1 3066 0 -chrVII 479394 482459 HC_gene_3545_tx_265 1 - 479394 482459 . 2 1630,1333 0,1733 -chrVII 479394 482459 HC_gene_3545_tx_266 1 - 479394 482459 . 2 2492,226 0,2840 -chrVII 479394 482459 HC_gene_3545_tx_267 1 - 479394 482459 . 2 1796,137 0,2929 -chrVII 479394 482459 HC_gene_3545_tx_268 1 - 479394 482459 . 2 2485,452 0,2614 -chrVII 479394 482459 HC_gene_3545_tx_269 1 - 479394 482459 . 2 2217,811 0,2255 -chrVII 479394 482459 HC_gene_3545_tx_270 1 - 479394 482459 . 2 1587,1283 0,1783 -chrVII 479394 482459 HC_gene_3545_tx_271 1 - 479394 482459 . 2 955,2046 0,1020 -chrVII 479394 482459 HC_gene_3545_tx_272 1 - 479394 482459 . 2 1500,124 0,2942 -chrVII 479394 482459 HC_gene_3545_tx_273 1 - 479394 482459 . 2 1103,781 0,2285 -chrVII 479394 482459 HC_gene_3545_tx_274 1 - 479394 482459 . 2 1581,680 0,2386 -chrVII 479394 482459 HC_gene_3545_tx_275 1 - 479394 482459 . 2 1075,1810 0,1256 -chrVII 479394 482459 HC_gene_3545_tx_276 1 - 479394 482459 . 2 1053,1516 0,1550 -chrVII 479394 482459 HC_gene_3545_tx_277 1 - 479394 482459 . 2 715,452 0,2614 -chrVII 479394 482459 HC_gene_3545_tx_278 1 - 479394 482459 . 2 1309,1714 0,1352 -chrVII 479394 482459 HC_gene_3545_tx_279 1 - 479394 482459 . 2 2840,141 0,2925 -chrVII 479394 482459 HC_gene_3545_tx_280 1 - 479394 482459 . 2 897,2092 0,974 -chrVII 479394 482459 HC_gene_3545_tx_281 1 - 479394 482459 . 2 1035,1856 0,1210 -chrVII 479394 482459 HC_gene_3545_tx_282 1 - 479394 482459 . 2 1251,1300 0,1766 -chrVII 479394 482459 HC_gene_3545_tx_283 1 - 479394 482459 . 2 1704,1240 0,1826 -chrVII 479394 482459 HC_gene_3545_tx_284 1 - 479394 482459 . 2 117,1856 0,1210 -chrVII 479394 482459 HC_gene_3545_tx_285 1 - 479394 482459 . 2 2324,256 0,2810 -chrVII 479394 482459 HC_gene_3545_tx_286 1 - 479394 482459 . 2 1128,1774 0,1292 -chrVII 479394 482459 HC_gene_3545_tx_287 1 - 479394 482459 . 2 1548,1099 0,1967 -chrVII 479394 482459 HC_gene_3545_tx_288 1 - 479394 482459 . 2 1136,388 0,2678 -chrVII 479394 482459 HC_gene_3545_tx_289 1 - 479394 482459 . 2 1546,901 0,2165 -chrVII 479394 482459 HC_gene_3545_tx_290 1 - 479394 482459 . 2 1436,1538 0,1528 -chrVII 479394 482459 HC_gene_3545_tx_291 1 - 479394 482459 . 2 2316,256 0,2810 -chrVII 479394 482459 HC_gene_3545_tx_292 1 - 479394 482459 . 2 1610,1312 0,1754 -chrVII 479394 482459 HC_gene_3545_tx_293 1 - 479394 482459 . 2 1962,934 0,2132 -chrVII 479394 482511 HC_gene_3545_tx_294 1 - 479394 482511 . 2 946,1966 0,1152 -chrVII 479394 482513 HC_gene_3545_tx_295 1 - 479394 482513 . 2 2562,55 0,3065 -chrVII 479394 482903 HC_gene_3545_tx_296 1 - 479394 482903 . 2 946,2465 0,1045 -chrVII 479394 482903 HC_gene_3545_tx_297 737 - 479394 482903 . 1 3510 0 -chrVII 479394 482903 HC_gene_3545_tx_298 1 - 479394 482903 . 2 2885,370 0,3140 -chrVII 479394 482903 HC_gene_3545_tx_299 1 - 479394 482903 . 2 1111,2326 0,1184 -chrVII 479394 482903 HC_gene_3545_tx_300 1 - 479394 482903 . 2 1172,2215 0,1295 -chrVII 479394 482903 HC_gene_3545_tx_301 1 - 479394 482903 . 2 1206,2221 0,1289 -chrVII 479394 482903 HC_gene_3545_tx_302 1 - 479394 482903 . 2 974,2461 0,1049 -chrVII 479394 482903 HC_gene_3545_tx_303 1 - 479394 482903 . 2 582,2088 0,1422 -chrVII 479394 482903 HC_gene_3545_tx_304 2 - 479394 482903 . 2 919,2490 0,1020 -chrVII 479394 482903 HC_gene_3545_tx_305 1 - 479394 482903 . 2 935,2467 0,1043 -chrVII 479394 482903 HC_gene_3545_tx_306 1 - 479394 482903 . 2 980,2478 0,1032 -chrVII 479394 482903 HC_gene_3545_tx_307 1 - 479394 482903 . 2 2217,1225 0,2285 -chrVII 479394 482903 HC_gene_3545_tx_308 1 - 479394 482903 . 2 963,2465 0,1045 -chrVII 479394 482903 HC_gene_3545_tx_309 1 - 479394 482903 . 2 1101,2320 0,1190 -chrVII 479394 482903 HC_gene_3545_tx_310 1 - 479394 482903 . 2 995,2422 0,1088 -chrVII 479394 482903 HC_gene_3545_tx_311 1 - 479394 482903 . 2 3026,391 0,3119 -chrVII 479394 482903 HC_gene_3545_tx_312 1 - 479394 482903 . 2 2158,832 0,2678 -chrVII 479394 482903 HC_gene_3545_tx_313 1 - 479394 482903 . 2 1172,2247 0,1263 -chrVII 479394 482903 HC_gene_3545_tx_314 1 - 479394 482903 . 2 1897,1456 0,2054 -chrVII 479394 482903 HC_gene_3545_tx_315 1 - 479394 482903 . 3 1016,394,1855 0,1142,1655 -chrVII 479394 482903 HC_gene_3545_tx_316 1 - 479394 482903 . 2 2028,533 0,2977 -chrVII 479394 482903 HC_gene_3545_tx_317 1 - 479394 482903 . 2 817,2605 0,905 -chrVII 479394 482903 HC_gene_3545_tx_318 1 - 479394 482903 . 2 1944,1456 0,2054 -chrVII 479394 482903 HC_gene_3545_tx_319 1 - 479394 482903 . 2 2344,553 0,2957 -chrVII 479394 482903 HC_gene_3545_tx_320 2 - 479394 482903 . 2 1016,2413 0,1097 -chrVII 479394 482903 HC_gene_3545_tx_321 1 - 479394 482903 . 2 722,2276 0,1234 -chrVII 479394 482903 HC_gene_3545_tx_322 1 - 479394 482903 . 2 2737,730 0,2780 -chrVII 479394 482903 HC_gene_3545_tx_323 1 - 479394 482903 . 2 980,2467 0,1043 -chrVII 479394 482903 HC_gene_3545_tx_324 1 - 479394 482903 . 2 984,2440 0,1070 -chrVII 479394 482903 HC_gene_3545_tx_325 1 - 479394 482903 . 2 1539,1330 0,2180 -chrVII 479394 482903 HC_gene_3545_tx_326 1 - 479394 482903 . 2 3183,280 0,3230 -chrVII 479394 482903 HC_gene_3545_tx_327 1 - 479394 482903 . 2 300,3090 0,420 -chrVII 479394 482903 HC_gene_3545_tx_328 1 - 479394 482903 . 2 2730,384 0,3126 -chrVII 479394 482903 HC_gene_3545_tx_329 1 - 479394 482903 . 2 2485,943 0,2567 -chrVII 479394 482903 HC_gene_3545_tx_330 1 - 479394 482903 . 2 1604,1684 0,1826 -chrVII 479394 482903 HC_gene_3545_tx_331 1 - 479394 482903 . 2 2562,481 0,3029 -chrVII 479394 482903 HC_gene_3545_tx_332 1 - 479394 482903 . 2 968,2403 0,1107 -chrVII 479394 482903 HC_gene_3545_tx_333 1 - 479394 482903 . 2 912,2490 0,1020 -chrVII 479394 482903 HC_gene_3545_tx_334 1 - 479394 482903 . 2 749,2088 0,1422 -chrVII 479394 482903 HC_gene_3545_tx_335 1 - 479394 482903 . 2 955,2440 0,1070 -chrVII 479394 482903 HC_gene_3545_tx_336 1 - 479394 482903 . 2 980,2403 0,1107 -chrVII 479394 482903 HC_gene_3545_tx_337 1 - 479394 482903 . 2 1000,2403 0,1107 -chrVII 479394 482903 HC_gene_3545_tx_338 1 - 479394 482903 . 2 1147,2266 0,1244 -chrVII 479394 482903 HC_gene_3545_tx_339 1 - 479394 482903 . 2 777,1175 0,2335 -chrVII 479394 482903 HC_gene_3545_tx_340 1 - 479394 482903 . 3 806,531,1612 0,905,1898 -chrVII 479394 482903 HC_gene_3545_tx_341 1 - 479394 482903 . 2 1075,2303 0,1207 -chrVII 479394 482903 HC_gene_3545_tx_342 1 - 479394 482903 . 2 2623,481 0,3029 -chrVII 479394 482903 HC_gene_3545_tx_343 1 - 479394 482903 . 2 2488,943 0,2567 -chrVII 479394 482903 HC_gene_3545_tx_344 1 - 479394 482903 . 2 2912,481 0,3029 -chrVII 479394 482903 HC_gene_3545_tx_345 1 - 479394 482903 . 2 1111,2300 0,1210 -chrVII 479394 482903 HC_gene_3545_tx_346 1 - 479394 482903 . 2 1016,2131 0,1379 -chrVII 479394 482903 HC_gene_3545_tx_347 1 - 479394 482903 . 2 954,2458 0,1052 -chrVII 479394 482903 HC_gene_3545_tx_348 1 - 479394 482903 . 2 1061,2320 0,1190 -chrVII 479394 482903 HC_gene_3545_tx_349 1 - 479394 482903 . 2 3032,391 0,3119 -chrVII 479394 482903 HC_gene_3545_tx_350 2 - 479394 482903 . 2 968,2478 0,1032 -chrVII 479394 482903 HC_gene_3545_tx_351 1 - 479394 482903 . 2 1425,2029 0,1481 -chrVII 479394 482903 HC_gene_3545_tx_352 1 - 479394 482903 . 2 1704,1727 0,1783 -chrVII 479394 482903 HC_gene_3545_tx_353 1 - 479394 482903 . 3 1303,999,241 0,2054,3269 -chrVII 479394 482903 HC_gene_3545_tx_354 1 - 479394 482903 . 2 865,1543 0,1967 -chrVII 479394 482903 HC_gene_3545_tx_355 1 - 479394 482903 . 2 1137,2283 0,1227 -chrVII 479394 482903 HC_gene_3545_tx_356 1 - 479394 482903 . 2 1587,709 0,2801 -chrVII 479394 482903 HC_gene_3545_tx_357 1 - 479394 482903 . 2 990,2431 0,1079 -chrVII 479394 482903 HC_gene_3545_tx_358 1 - 479394 482903 . 2 1562,1234 0,2276 -chrVII 479394 482903 HC_gene_3545_tx_359 1 - 479394 482903 . 2 955,2490 0,1020 -chrVII 479394 482903 HC_gene_3545_tx_360 1 - 479394 482903 . 2 792,2614 0,896 -chrVII 479394 482903 HC_gene_3545_tx_361 1 - 479394 482903 . 2 2324,961 0,2549 -chrVII 479394 482903 HC_gene_3545_tx_362 1 - 479394 482903 . 2 1059,2326 0,1184 -chrVII 479394 482903 HC_gene_3545_tx_363 1 - 479394 482903 . 4 1286,756,278,124 0,1646,2833,3386 -chrVII 479394 482903 HC_gene_3545_tx_364 1 - 479394 482903 . 2 1309,2059 0,1451 -chrVII 479394 482903 HC_gene_3545_tx_365 3 - 479394 482903 . 2 946,2490 0,1020 -chrVII 479394 482903 HC_gene_3545_tx_366 1 - 479394 482903 . 3 603,99,2671 0,655,839 -chrVII 479394 482903 HC_gene_3545_tx_367 1 - 479394 482903 . 3 1357,652,533 0,1794,2977 -chrVII 479394 482903 HC_gene_3545_tx_368 1 - 479394 482903 . 2 2023,1420 0,2090 -chrVII 479394 482903 HC_gene_3545_tx_369 2 - 479394 482903 . 2 1733,1651 0,1859 -chrVII 479394 482903 HC_gene_3545_tx_370 1 - 479394 482903 . 2 1090,2290 0,1220 -chrVII 479394 482903 HC_gene_3545_tx_371 1 - 479394 482903 . 2 763,2563 0,947 -chrVII 479394 482903 HC_gene_3545_tx_372 1 - 479394 482903 . 2 2069,1378 0,2132 -chrVII 479394 482903 HC_gene_3545_tx_373 1 - 479394 482903 . 2 1134,2300 0,1210 -chrVII 479394 482903 HC_gene_3545_tx_374 1 - 479394 482903 . 2 2450,316 0,3194 -chrVII 479394 482903 HC_gene_3545_tx_375 1 - 479394 482903 . 2 1084,2300 0,1210 -chrVII 479394 482903 HC_gene_3545_tx_376 1 - 479394 482903 . 2 1119,2300 0,1210 -chrVII 479394 482903 HC_gene_3545_tx_377 1 - 479394 482903 . 2 1344,2064 0,1446 -chrVII 479394 482903 HC_gene_3545_tx_378 1 - 479394 482903 . 2 974,2320 0,1190 -chrVII 479394 482903 HC_gene_3545_tx_379 1 - 479394 482903 . 2 2402,961 0,2549 -chrVII 479394 482903 HC_gene_3545_tx_380 1 - 479394 482903 . 2 1974,1361 0,2149 -chrVII 479394 482903 HC_gene_3545_tx_381 1 - 479394 482903 . 2 2259,628 0,2882 -chrVII 479394 482903 HC_gene_3545_tx_382 1 - 479394 482903 . 2 2059,349 0,3161 -chrVII 479394 482903 HC_gene_3545_tx_383 1 - 479394 482903 . 2 1092,2300 0,1210 -chrVII 479394 482903 HC_gene_3545_tx_384 1 - 479394 482903 . 2 2768,631 0,2879 -chrVII 479394 482903 HC_gene_3545_tx_385 1 - 479394 482903 . 2 996,679 0,2831 -chrVII 479394 482903 HC_gene_3545_tx_386 1 - 479394 482903 . 2 996,2440 0,1070 -chrVII 479394 482903 HC_gene_3545_tx_387 1 - 479394 482903 . 2 3101,226 0,3284 -chrVII 479394 482903 HC_gene_3545_tx_388 1 - 479394 482903 . 2 891,1978 0,1532 -chrVII 479394 482903 HC_gene_3545_tx_389 1 - 479394 482903 . 2 2741,481 0,3029 -chrVII 479394 482903 HC_gene_3545_tx_390 1 - 479394 482903 . 2 1146,2276 0,1234 -chrVII 479394 482903 HC_gene_3545_tx_391 1 - 479394 482903 . 2 1128,2285 0,1225 -chrVII 479394 482903 HC_gene_3545_tx_392 1 - 479394 482903 . 2 1044,2381 0,1129 -chrVII 479394 482903 HC_gene_3545_tx_393 1 - 479394 482903 . 2 2387,1054 0,2456 -chrVII 479394 482903 HC_gene_3545_tx_394 1 - 479394 482903 . 2 1044,2398 0,1112 -chrVII 479394 482903 HC_gene_3545_tx_395 1 - 479394 482903 . 2 2208,221 0,3289 -chrVII 479394 482903 HC_gene_3545_tx_396 1 - 479394 482903 . 2 1256,1456 0,2054 -chrVII 479394 482903 HC_gene_3545_tx_397 1 - 479394 482903 . 2 2434,553 0,2957 -chrVII 479394 482903 HC_gene_3545_tx_398 1 - 479394 482903 . 2 996,2422 0,1088 -chrVII 479394 482903 HC_gene_3545_tx_399 1 - 479394 482903 . 2 2284,1130 0,2380 -chrVII 479394 482903 HC_gene_3545_tx_400 1 - 479394 482903 . 2 1004,2334 0,1176 -chrVII 479394 482903 HC_gene_3545_tx_401 1 - 479394 482903 . 2 1870,1234 0,2276 -chrVII 479394 482903 HC_gene_3545_tx_402 1 - 479394 482903 . 2 1035,2002 0,1508 -chrVII 479804 481415 HC_gene_3545_tx_433 1 - 479804 481415 . 1 1612 0 -chrVII 479804 482048 HC_gene_3545_tx_403 1 - 479804 482048 . 1 2245 0 -chrVII 479805 482258 HC_gene_3545_tx_404 1 - 479805 482258 . 1 2454 0 -chrVII 479807 481415 HC_gene_3545_tx_434 1 - 479807 481415 . 1 1609 0 -chrVII 479808 480056 HC_gene_3545_tx_453 1 - 479808 480056 . 1 249 0 -chrVII 479808 480320 HC_gene_3545_tx_465 1 - 479808 480320 . 1 513 0 -chrVII 479808 480398 HC_gene_3545_tx_466 1 - 479808 480398 . 1 591 0 -chrVII 479808 481415 HC_gene_3545_tx_435 1 - 479808 481415 . 1 1608 0 -chrVII 479808 482903 HC_gene_3545_tx_405 1 - 479808 482903 . 1 3096 0 -chrVII 479809 480056 HC_gene_3545_tx_454 1 - 479809 480056 . 1 248 0 -chrVII 479809 481415 HC_gene_3545_tx_436 4 - 479809 481415 . 1 1607 0 -chrVII 479809 482903 HC_gene_3545_tx_406 1 - 479809 482903 . 2 1161,1756 0,1339 -chrVII 479810 480056 HC_gene_3545_tx_455 4 - 479810 480056 . 1 247 0 -chrVII 479810 480320 HC_gene_3545_tx_467 1 - 479810 480320 . 1 511 0 -chrVII 479810 480398 HC_gene_3545_tx_468 2 - 479810 480398 . 1 589 0 -chrVII 479810 480546 HC_gene_3545_tx_473 1 - 479810 480546 . 1 737 0 -chrVII 479810 481415 HC_gene_3545_tx_437 4 - 479810 481415 . 1 1606 0 -chrVII 479810 482903 HC_gene_3545_tx_407 1 - 479810 482903 . 1 3094 0 -chrVII 479816 480320 HC_gene_3545_tx_469 1 - 479816 480320 . 1 505 0 -chrVII 479816 481415 HC_gene_3545_tx_438 1 - 479816 481415 . 2 1165,172 0,1428 -chrVII 479817 480056 HC_gene_3545_tx_456 2 - 479817 480056 . 1 240 0 -chrVII 479817 480546 HC_gene_3545_tx_474 1 - 479817 480546 . 1 730 0 -chrVII 479817 481415 HC_gene_3545_tx_439 5 - 479817 481415 . 1 1599 0 -chrVII 479817 482258 HC_gene_3545_tx_408 1 - 479817 482258 . 1 2442 0 -chrVII 479817 482903 HC_gene_3545_tx_409 4 - 479817 482903 . 1 3087 0 -chrVII 479818 480056 HC_gene_3545_tx_457 3 - 479818 480056 . 1 239 0 -chrVII 479818 482903 HC_gene_3545_tx_410 2 - 479818 482903 . 1 3086 0 -chrVII 479819 480056 HC_gene_3545_tx_458 1 - 479819 480056 . 1 238 0 -chrVII 479819 481415 HC_gene_3545_tx_440 2 - 479819 481415 . 1 1597 0 -chrVII 479820 481415 HC_gene_3545_tx_441 3 - 479820 481415 . 1 1596 0 -chrVII 479820 482903 HC_gene_3545_tx_411 1 - 479820 482903 . 1 3084 0 -chrVII 479821 480546 HC_gene_3545_tx_475 1 - 479821 480546 . 1 726 0 -chrVII 479821 481415 HC_gene_3545_tx_442 3 - 479821 481415 . 1 1595 0 -chrVII 479821 482903 HC_gene_3545_tx_412 1 - 479821 482903 . 1 3083 0 -chrVII 479822 480546 HC_gene_3545_tx_476 1 - 479822 480546 . 1 725 0 -chrVII 479822 482903 HC_gene_3545_tx_413 1 - 479822 482903 . 1 3082 0 -chrVII 479824 480398 HC_gene_3545_tx_470 1 - 479824 480398 . 1 575 0 -chrVII 479824 481415 HC_gene_3545_tx_443 1 - 479824 481415 . 1 1592 0 -chrVII 479825 482903 HC_gene_3545_tx_414 1 - 479825 482903 . 1 3079 0 -chrVII 479827 480056 HC_gene_3545_tx_459 1 - 479827 480056 . 1 230 0 -chrVII 479827 480546 HC_gene_3545_tx_477 1 - 479827 480546 . 1 720 0 -chrVII 479827 481415 HC_gene_3545_tx_444 1 - 479827 481415 . 1 1589 0 -chrVII 479828 481415 HC_gene_3545_tx_445 2 - 479828 481415 . 1 1588 0 -chrVII 479830 482459 HC_gene_3545_tx_415 1 - 479830 482459 . 1 2630 0 -chrVII 479831 480056 HC_gene_3545_tx_460 1 - 479831 480056 . 1 226 0 -chrVII 479831 480398 HC_gene_3545_tx_471 1 - 479831 480398 . 1 568 0 -chrVII 479832 480056 HC_gene_3545_tx_461 1 - 479832 480056 . 1 225 0 -chrVII 479833 480546 HC_gene_3545_tx_478 1 - 479833 480546 . 1 714 0 -chrVII 479833 481415 HC_gene_3545_tx_446 2 - 479833 481415 . 1 1583 0 -chrVII 479838 482903 HC_gene_3545_tx_416 1 - 479838 482903 . 1 3066 0 -chrVII 479839 481415 HC_gene_3545_tx_447 1 - 479839 481415 . 1 1577 0 -chrVII 479839 482903 HC_gene_3545_tx_417 1 - 479839 482903 . 1 3065 0 -chrVII 479840 480546 HC_gene_3545_tx_479 1 - 479840 480546 . 1 707 0 -chrVII 479841 480056 HC_gene_3545_tx_462 2 - 479841 480056 . 1 216 0 -chrVII 479841 481415 HC_gene_3545_tx_448 1 - 479841 481415 . 1 1575 0 -chrVII 479842 480056 HC_gene_3545_tx_463 2 - 479842 480056 . 1 215 0 -chrVII 479843 480056 HC_gene_3545_tx_464 3 - 479843 480056 . 1 214 0 -chrVII 479843 480398 HC_gene_3545_tx_472 1 - 479843 480398 . 1 556 0 -chrVII 479843 481415 HC_gene_3545_tx_449 7 - 479843 481415 . 1 1573 0 -chrVII 479843 482144 HC_gene_3545_tx_418 1 - 479843 482144 . 1 2302 0 -chrVII 479843 482459 HC_gene_3545_tx_419 1 - 479843 482459 . 1 2617 0 -chrVII 479843 482903 HC_gene_3545_tx_420 1 - 479843 482903 . 2 723,2242 0,819 -chrVII 479843 482903 HC_gene_3545_tx_421 1 - 479843 482903 . 1 3061 0 -chrVII 479845 482459 HC_gene_3545_tx_422 1 - 479845 482459 . 1 2615 0 -chrVII 479845 482903 HC_gene_3545_tx_423 2 - 479845 482903 . 1 3059 0 -chrVII 479846 480546 HC_gene_3545_tx_480 1 - 479846 480546 . 1 701 0 -chrVII 479846 481415 HC_gene_3545_tx_450 1 - 479846 481415 . 1 1570 0 -chrVII 479846 482258 HC_gene_3545_tx_424 1 - 479846 482258 . 1 2413 0 -chrVII 479847 481415 HC_gene_3545_tx_451 1 - 479847 481415 . 1 1569 0 -chrVII 479847 482903 HC_gene_3545_tx_425 2 - 479847 482903 . 1 3057 0 -chrVII 479848 481415 HC_gene_3545_tx_452 1 - 479848 481415 . 1 1568 0 -chrVII 479848 482258 HC_gene_3545_tx_426 1 - 479848 482258 . 1 2411 0 -chrVII 482848 483192 HC_gene_3546_tx_1 1 - 482848 483192 . 1 345 0 -chrVII 482930 483192 HC_gene_3546_tx_2 1 - 482930 483192 . 1 263 0 -chrVII 482930 483880 HC_gene_3546_tx_3 1 - 482930 483880 . 1 951 0 -chrVII 483887 484828 MC_gene_3547_tx_1 1 - 483887 484828 . 1 942 0 -chrVII 483926 484596 HC_gene_3113_tx_1 2 + 483926 484596 . 1 671 0 -chrVII 485899 487588 HC_gene_3114_tx_1 1 + 485899 487588 . 1 1690 0 -chrVII 485899 489561 HC_gene_3114_tx_2 15 + 485899 489561 . 1 3663 0 -chrVII 485899 489561 HC_gene_3114_tx_3 1 + 485899 489561 . 2 1028,2466 0,1197 -chrVII 486390 489561 HC_gene_3114_tx_4 3 + 486390 489561 . 1 3172 0 -chrVII 487037 489561 HC_gene_3114_tx_5 5 + 487037 489561 . 1 2525 0 -chrVII 487228 489561 HC_gene_3114_tx_6 3 + 487228 489561 . 1 2334 0 -chrVII 487308 489561 HC_gene_3114_tx_7 2 + 487308 489561 . 1 2254 0 -chrVII 488100 489561 HC_gene_3114_tx_8 6 + 488100 489561 . 1 1462 0 -chrVII 488156 489561 HC_gene_3114_tx_9 2 + 488156 489561 . 1 1406 0 -chrVII 488279 489561 HC_gene_3114_tx_10 1 + 488279 489561 . 2 829,389 0,894 -chrVII 488279 489561 HC_gene_3114_tx_11 11 + 488279 489561 . 1 1283 0 -chrVII 488811 489561 HC_gene_3114_tx_12 6 + 488811 489561 . 1 751 0 -chrVII 489388 490562 HC_gene_3548_tx_1 1 - 489388 490562 . 1 1175 0 -chrVII 489484 490385 HC_gene_3548_tx_2 4 - 489484 490385 . 1 902 0 -chrVII 489484 490562 HC_gene_3548_tx_3 23 - 489484 490562 . 1 1079 0 -chrVII 489484 490562 HC_gene_3548_tx_4 1 - 489484 490562 . 2 507,271 0,808 -chrVII 489484 490562 HC_gene_3548_tx_5 1 - 489484 490562 . 2 826,162 0,917 -chrVII 489650 491181 MC_gene_3115_tx_1 1 + 489650 491181 . 1 1532 0 -chrVII 490685 491802 HC_gene_3549_tx_1 3 - 490685 491802 . 1 1118 0 -chrVII 490685 491961 HC_gene_3549_tx_2 11 - 490685 491961 . 1 1277 0 -chrVII 492219 494278 HC_gene_3550_tx_1 7 - 492219 494278 . 1 2060 0 -chrVII 492219 494278 HC_gene_3550_tx_2 1 - 492219 494278 . 2 1789,208 0,1852 -chrVII 492331 494278 HC_gene_3550_tx_3 13 - 492331 494278 . 1 1948 0 -chrVII 492461 494278 HC_gene_3550_tx_4 8 - 492461 494278 . 1 1818 0 -chrVII 492713 494278 HC_gene_3550_tx_5 7 - 492713 494278 . 1 1566 0 -chrVII 494465 495340 HC_gene_3116_tx_1 96 + 494465 495340 . 1 876 0 -chrVII 494465 495340 HC_gene_3116_tx_2 1 + 494465 495340 . 2 268,478 0,398 -chrVII 494465 495391 HC_gene_3116_tx_3 1 + 494465 495391 . 2 727,31 0,896 -chrVII 494669 495340 HC_gene_3116_tx_4 7 + 494669 495340 . 1 672 0 -chrVII 494669 495340 HC_gene_3116_tx_5 1 + 494669 495340 . 2 461,68 0,604 -chrVII 495254 495661 HC_gene_3551_tx_1 25 - 495254 495661 . 1 408 0 -chrVII 495254 496159 HC_gene_3551_tx_2 10 - 495254 496159 . 1 906 0 -chrVII 495254 496341 HC_gene_3551_tx_3 13 - 495254 496341 . 1 1088 0 -chrVII 495254 496557 HC_gene_3551_tx_4 97 - 495254 496557 . 1 1304 0 -chrVII 497054 497807 HC_gene_3552_tx_1 15 - 497054 497807 . 2 312,349 0,405 -chrVII 497054 497807 HC_gene_3552_tx_2 1 - 497054 497807 . 1 754 0 -chrVII 497054 497973 HC_gene_3552_tx_3 26 - 497054 497973 . 2 312,515 0,405 -chrVII 497054 497973 HC_gene_3552_tx_4 2 - 497054 497973 . 1 920 0 -chrVII 497054 497973 HC_gene_3552_tx_5 3 - 497054 497973 . 2 312,513 0,407 -chrVII 497054 497973 HC_gene_3552_tx_6 2 - 497054 497973 . 2 285,515 0,405 -chrVII 497054 498053 HC_gene_3552_tx_7 66 - 497054 498053 . 3 312,479,54 0,405,946 -chrVII 497054 498053 HC_gene_3552_tx_8 1 - 497054 498053 . 2 312,595 0,405 -chrVII 497054 498053 HC_gene_3552_tx_9 1 - 497054 498053 . 3 312,434,54 0,405,946 -chrVII 497054 498053 HC_gene_3552_tx_10 3 - 497054 498053 . 3 312,477,54 0,407,946 -chrVII 497054 498053 HC_gene_3552_tx_11 1 - 497054 498053 . 3 317,479,54 0,405,946 -chrVII 497054 498053 HC_gene_3552_tx_12 1 - 497054 498053 . 3 312,483,54 0,401,946 -chrVII 497054 498053 HC_gene_3552_tx_13 2 - 497054 498053 . 2 884,54 0,946 -chrVII 497054 498053 HC_gene_3552_tx_14 1 - 497054 498053 . 1 1000 0 -chrVII 497054 498053 HC_gene_3552_tx_15 1 - 497054 498053 . 3 312,455,58 0,405,942 -chrVII 497906 498341 HC_gene_3117_tx_1 1 + 497906 498341 . 1 436 0 -chrVII 497906 498434 HC_gene_3117_tx_2 3 + 497906 498434 . 1 529 0 -chrVII 498184 499433 HC_gene_3553_tx_1 6 - 498184 499433 . 1 1250 0 -chrVII 498184 499916 HC_gene_3553_tx_2 17 - 498184 499916 . 1 1733 0 -chrVII 499557 500076 MC_gene_3118_tx_1 1 + 499557 500076 . 1 520 0 -chrVII 500120 502612 HC_gene_3119_tx_1 10 + 500120 502612 . 1 2493 0 -chrVII 502326 502710 HC_gene_3554_tx_1 2 - 502326 502710 . 1 385 0 -chrVII 502909 503625 HC_gene_3120_tx_1 1 + 502909 503625 . 1 717 0 -chrVII 502909 504571 HC_gene_3120_tx_2 15 + 502909 504571 . 1 1663 0 -chrVII 502909 504661 HC_gene_3120_tx_3 1 + 502909 504661 . 1 1753 0 -chrVII 503734 504571 HC_gene_3120_tx_4 2 + 503734 504571 . 1 838 0 -chrVII 503734 504661 HC_gene_3120_tx_5 2 + 503734 504661 . 1 928 0 -chrVII 504549 505017 HC_gene_3555_tx_1 12 - 504549 505017 . 1 469 0 -chrVII 504549 505557 HC_gene_3555_tx_2 19 - 504549 505557 . 1 1009 0 -chrVII 504549 505890 HC_gene_3555_tx_3 63 - 504549 505890 . 1 1342 0 -chrVII 504549 505890 HC_gene_3555_tx_4 1 - 504549 505890 . 2 514,752 0,590 -chrVII 504549 505890 HC_gene_3555_tx_5 1 - 504549 505890 . 2 925,234 0,1108 -chrVII 504549 505890 HC_gene_3555_tx_6 1 - 504549 505890 . 2 931,234 0,1108 -chrVII 506058 508085 HC_gene_3121_tx_1 5 + 506058 508085 . 1 2028 0 -chrVII 506058 508085 HC_gene_3121_tx_2 1 + 506058 508085 . 2 103,769 0,1259 -chrVII 506404 506713 MC_gene_3556_tx_1 1 - 506404 506713 . 1 310 0 -chrVII 506962 507419 HC_gene_3121_tx_3 2 + 506962 507419 . 1 458 0 -chrVII 506962 508085 HC_gene_3121_tx_4 101 + 506962 508085 . 1 1124 0 -chrVII 506962 508085 HC_gene_3121_tx_5 1 + 506962 508085 . 2 147,860 0,264 -chrVII 506962 508489 HC_gene_3121_tx_6 2 + 506962 508489 . 1 1528 0 -chrVII 507948 508248 HC_gene_3557_tx_1 52 - 507948 508248 . 1 301 0 -chrVII 507948 508452 HC_gene_3557_tx_2 531 - 507948 508452 . 1 505 0 -chrVII 507948 508546 HC_gene_3557_tx_3 24 - 507948 508546 . 1 599 0 -chrVII 508836 509094 MC_gene_3122_tx_1 1 + 508836 509094 . 1 259 0 -chrVII 508907 509312 HC_gene_3558_tx_1 13 - 508907 509312 . 1 406 0 -chrVII 508907 509312 HC_gene_3558_tx_2 1 - 508907 509312 . 2 88,273 0,133 -chrVII 508907 509470 HC_gene_3558_tx_3 13 - 508907 509470 . 1 564 0 -chrVII 508907 509551 HC_gene_3558_tx_4 5 - 508907 509551 . 1 645 0 -chrVII 508907 509758 HC_gene_3558_tx_6 9 - 508907 509758 . 1 852 0 -chrVII 508907 510279 HC_gene_3558_tx_7 3 - 508907 510279 . 1 1373 0 -chrVII 508907 510543 HC_gene_3558_tx_8 3 - 508907 510543 . 1 1637 0 -chrVII 508907 511046 HC_gene_3558_tx_9 15 - 508907 511046 . 1 2140 0 -chrVII 508990 509312 HC_gene_3558_tx_10 1 - 508990 509312 . 1 323 0 -chrVII 508990 509551 HC_gene_3558_tx_5 1 - 508990 509551 . 1 562 0 -chrVII 508993 509312 HC_gene_3558_tx_11 1 - 508993 509312 . 1 320 0 -chrVII 511315 512921 HC_gene_3123_tx_1 2 + 511315 512921 . 1 1607 0 -chrVII 511435 512921 HC_gene_3123_tx_2 1 + 511435 512921 . 1 1487 0 -chrVII 511450 512921 HC_gene_3123_tx_3 9 + 511450 512921 . 1 1472 0 -chrVII 511826 512921 HC_gene_3123_tx_4 6 + 511826 512921 . 1 1096 0 -chrVII 511936 512438 MC_gene_3559_tx_1 1 - 511936 512438 . 1 503 0 -chrVII 512173 512921 HC_gene_3123_tx_5 5 + 512173 512921 . 1 749 0 -chrVII 512532 512908 HC_gene_3560_tx_1 6 - 512532 512908 . 1 377 0 -chrVII 513136 514430 HC_gene_3124_tx_1 33 + 513136 514430 . 1 1295 0 -chrVII 513136 514430 HC_gene_3124_tx_2 1 + 513136 514430 . 2 823,409 0,886 -chrVII 513305 514430 HC_gene_3124_tx_3 5 + 513305 514430 . 1 1126 0 -chrVII 513485 514344 LC_gene_3561_tx_1 1 - 513485 514344 . 2 83,485 0,375 -chrVII 514530 516643 HC_gene_3125_tx_1 6 + 514530 516643 . 1 2114 0 -chrVII 515090 515785 LC_gene_3562_tx_1 1 - 515090 515785 . 1 696 0 -chrVII 515094 516643 HC_gene_3125_tx_2 2 + 515094 516643 . 1 1550 0 -chrVII 515232 516643 HC_gene_3125_tx_3 1 + 515232 516643 . 1 1412 0 -chrVII 515482 516643 HC_gene_3125_tx_4 3 + 515482 516643 . 1 1162 0 -chrVII 516677 520991 HC_gene_3126_tx_1 8 + 516677 520991 . 1 4315 0 -chrVII 518770 520991 HC_gene_3126_tx_2 1 + 518770 520991 . 2 42,1783 0,439 -chrVII 518770 520991 HC_gene_3126_tx_3 7 + 518770 520991 . 1 2222 0 -chrVII 518770 520991 HC_gene_3126_tx_4 1 + 518770 520991 . 2 1258,906 0,1316 -chrVII 519258 520991 HC_gene_3126_tx_5 15 + 519258 520991 . 1 1734 0 -chrVII 520883 521805 HC_gene_3563_tx_1 8 - 520883 521805 . 1 923 0 -chrVII 520883 522096 HC_gene_3563_tx_2 16 - 520883 522096 . 1 1214 0 -chrVII 522295 522882 HC_gene_3127_tx_1 2 + 522295 522882 . 1 588 0 -chrVII 522295 523013 HC_gene_3127_tx_2 2 + 522295 523013 . 1 719 0 -chrVII 522295 523489 HC_gene_3127_tx_3 4 + 522295 523489 . 1 1195 0 -chrVII 522295 523489 HC_gene_3127_tx_4 1 + 522295 523489 . 2 133,832 0,363 -chrVII 522295 523699 HC_gene_3127_tx_5 3 + 522295 523699 . 1 1405 0 -chrVII 522834 523418 HC_gene_3564_tx_1 12 - 522834 523418 . 1 585 0 -chrVII 522834 525553 HC_gene_3564_tx_2 1 - 522834 525553 . 1 2720 0 -chrVII 523140 523418 HC_gene_3564_tx_3 2 - 523140 523418 . 1 279 0 -chrVII 523140 524737 HC_gene_3564_tx_4 1 - 523140 524737 . 1 1598 0 -chrVII 523627 524789 HC_gene_3128_tx_1 6 + 523627 524789 . 1 1163 0 -chrVII 523627 524790 HC_gene_3128_tx_2 1 + 523627 524790 . 1 1164 0 -chrVII 523627 524791 HC_gene_3128_tx_3 1 + 523627 524791 . 1 1165 0 -chrVII 523627 524793 HC_gene_3128_tx_4 1 + 523627 524793 . 1 1167 0 -chrVII 523627 524795 HC_gene_3128_tx_5 12 + 523627 524795 . 1 1169 0 -chrVII 523627 524796 HC_gene_3128_tx_6 3 + 523627 524796 . 1 1170 0 -chrVII 523627 524799 HC_gene_3128_tx_7 13 + 523627 524799 . 1 1173 0 -chrVII 523627 524800 HC_gene_3128_tx_8 3 + 523627 524800 . 1 1174 0 -chrVII 523627 524801 HC_gene_3128_tx_9 1 + 523627 524801 . 1 1175 0 -chrVII 523627 525093 HC_gene_3128_tx_10 1 + 523627 525093 . 1 1467 0 -chrVII 523627 525093 HC_gene_3128_tx_11 1 + 523627 525093 . 2 784,566 0,901 -chrVII 523627 525177 HC_gene_3128_tx_12 11 + 523627 525177 . 1 1551 0 -chrVII 523806 524788 HC_gene_3128_tx_13 1 + 523806 524788 . 1 983 0 -chrVII 523806 524795 HC_gene_3128_tx_14 2 + 523806 524795 . 1 990 0 -chrVII 523806 524796 HC_gene_3128_tx_15 1 + 523806 524796 . 1 991 0 -chrVII 524190 524788 HC_gene_3128_tx_16 1 + 524190 524788 . 1 599 0 -chrVII 524190 524789 HC_gene_3128_tx_17 3 + 524190 524789 . 1 600 0 -chrVII 524190 524791 HC_gene_3128_tx_18 1 + 524190 524791 . 1 602 0 -chrVII 524190 524795 HC_gene_3128_tx_19 4 + 524190 524795 . 1 606 0 -chrVII 524190 524797 HC_gene_3128_tx_20 1 + 524190 524797 . 1 608 0 -chrVII 524190 524799 HC_gene_3128_tx_21 6 + 524190 524799 . 1 610 0 -chrVII 524190 524801 HC_gene_3128_tx_22 1 + 524190 524801 . 1 612 0 -chrVII 524190 525177 HC_gene_3128_tx_23 3 + 524190 525177 . 1 988 0 -chrVII 524190 525177 HC_gene_3128_tx_24 1 + 524190 525177 . 2 91,300 0,688 -chrVII 524977 525177 HC_gene_3128_tx_25 3 + 524977 525177 . 1 201 0 -chrVII 525190 526737 HC_gene_3129_tx_1 45 + 525190 526737 . 1 1548 0 -chrVII 525921 526737 HC_gene_3129_tx_2 97 + 525921 526737 . 1 817 0 -chrVII 526128 526737 HC_gene_3129_tx_3 32 + 526128 526737 . 1 610 0 -chrVII 526399 526737 HC_gene_3129_tx_4 24 + 526399 526737 . 1 339 0 -chrVII 526631 527386 HC_gene_3565_tx_1 6 - 526631 527386 . 1 756 0 -chrVII 526818 527187 HC_gene_3565_tx_2 46 - 526818 527187 . 1 370 0 -chrVII 526818 527258 HC_gene_3565_tx_3 10 - 526818 527258 . 1 441 0 -chrVII 526818 527386 HC_gene_3565_tx_4 481 - 526818 527386 . 1 569 0 -chrVII 527032 527421 LC_gene_3130_tx_1 1 + 527032 527421 . 1 390 0 -chrVII 527626 528599 HC_gene_3131_tx_1 26 + 527626 528599 . 1 974 0 -chrVII 527822 528599 HC_gene_3131_tx_2 4 + 527822 528599 . 1 778 0 -chrVII 528026 528484 MC_gene_3566_tx_1 1 - 528026 528484 . 1 459 0 -chrVII 528478 530056 LC_gene_3567_tx_1 1 - 528478 530056 . 1 1579 0 -chrVII 529248 531213 HC_gene_3132_tx_1 1 + 529248 531213 . 2 1077,815 0,1151 -chrVII 529797 531213 HC_gene_3132_tx_2 1 + 529797 531213 . 1 1417 0 -chrVII 530458 531213 HC_gene_3132_tx_3 2 + 530458 531213 . 1 756 0 -chrVII 531052 531443 LC_gene_3568_tx_1 1 - 531052 531443 . 1 392 0 -chrVII 531614 531926 MC_gene_3133_tx_1 1 + 531614 531926 . 1 313 0 -chrVII 531800 532082 HC_gene_3569_tx_1 19 - 531800 532082 . 1 283 0 -chrVII 531800 532600 HC_gene_3569_tx_2 158 - 531800 532600 . 1 801 0 -chrVII 532844 533863 HC_gene_3134_tx_1 6 + 532844 533863 . 1 1020 0 -chrVII 532844 533982 HC_gene_3134_tx_2 206 + 532844 533982 . 1 1139 0 -chrVII 532844 533982 HC_gene_3134_tx_3 1 + 532844 533982 . 2 294,612 0,527 -chrVII 532844 533982 HC_gene_3134_tx_4 1 + 532844 533982 . 2 363,529 0,610 -chrVII 532844 533982 HC_gene_3134_tx_5 1 + 532844 533982 . 2 1029,73 0,1066 -chrVII 533405 533863 HC_gene_3134_tx_6 1 + 533405 533863 . 1 459 0 -chrVII 533405 533982 HC_gene_3134_tx_7 21 + 533405 533982 . 1 578 0 -chrVII 533495 533982 HC_gene_3134_tx_8 24 + 533495 533982 . 1 488 0 -chrVII 533653 533982 HC_gene_3134_tx_9 24 + 533653 533982 . 1 330 0 -chrVII 534068 534401 HC_gene_3570_tx_1 674 - 534068 534401 . 1 334 0 -chrVII 534068 534483 HC_gene_3570_tx_2 4067 - 534068 534483 . 1 416 0 -chrVII 534068 534697 HC_gene_3570_tx_3 19 - 534068 534697 . 1 630 0 -chrVII 534068 534805 HC_gene_3570_tx_4 50 - 534068 534805 . 1 738 0 -chrVII 534068 534805 HC_gene_3570_tx_5 4 - 534068 534805 . 2 406,24 0,714 -chrVII 534068 534816 HC_gene_3570_tx_6 6 - 534068 534816 . 2 406,31 0,718 -chrVII 534068 534817 HC_gene_3570_tx_7 20 - 534068 534817 . 2 406,32 0,718 -chrVII 534068 534817 HC_gene_3570_tx_8 1 - 534068 534817 . 2 406,30 0,720 -chrVII 534068 534818 HC_gene_3570_tx_9 6 - 534068 534818 . 2 406,33 0,718 -chrVII 534068 534819 HC_gene_3570_tx_10 13 - 534068 534819 . 2 406,34 0,718 -chrVII 534068 534823 HC_gene_3570_tx_11 41 - 534068 534823 . 2 406,38 0,718 -chrVII 534068 534826 HC_gene_3570_tx_12 1 - 534068 534826 . 2 406,39 0,720 -chrVII 534068 534826 HC_gene_3570_tx_13 2 - 534068 534826 . 2 406,41 0,718 -chrVII 534068 534828 HC_gene_3570_tx_14 7 - 534068 534828 . 2 406,43 0,718 -chrVII 534068 534829 HC_gene_3570_tx_15 1 - 534068 534829 . 2 406,44 0,718 -chrVII 534080 534324 MC_gene_3135_tx_1 1 + 534080 534324 . 1 245 0 -chrVII 535010 535809 HC_gene_3571_tx_1 1 - 535010 535809 . 1 800 0 -chrVII 535112 535670 HC_gene_3136_tx_1 10 + 535112 535670 . 1 559 0 -chrVII 535112 535759 HC_gene_3136_tx_2 2 + 535112 535759 . 1 648 0 -chrVII 537210 540187 LC_gene_3137_tx_1 1 + 537210 540187 . 1 2978 0 -chrVII 542052 543459 HC_gene_3138_tx_1 16 + 542052 543459 . 1 1408 0 -chrVII 542052 543459 HC_gene_3138_tx_2 1 + 542052 543459 . 4 182,182,281,361 0,335,642,1047 -chrVII 542177 543459 HC_gene_3138_tx_3 13 + 542177 543459 . 1 1283 0 -chrVII 542216 543459 HC_gene_3138_tx_4 1 + 542216 543459 . 1 1244 0 -chrVII 542886 543459 HC_gene_3138_tx_5 4 + 542886 543459 . 1 574 0 -chrVII 543388 544350 HC_gene_3572_tx_1 2 - 543388 544350 . 1 963 0 -chrVII 543552 544301 HC_gene_3139_tx_1 74 + 543552 544301 . 2 87,580 0,170 -chrVII 543552 544301 HC_gene_3139_tx_2 1 + 543552 544301 . 2 110,455 0,295 -chrVII 543552 544301 HC_gene_3139_tx_3 3 + 543552 544301 . 1 750 0 -chrVII 543552 544440 HC_gene_3139_tx_4 33 + 543552 544440 . 2 87,719 0,170 -chrVII 543552 544440 HC_gene_3139_tx_5 3 + 543552 544440 . 1 889 0 -chrVII 543765 544301 HC_gene_3139_tx_6 6 + 543765 544301 . 1 537 0 -chrVII 543765 544440 HC_gene_3139_tx_8 1 + 543765 544440 . 1 676 0 -chrVII 543824 544301 HC_gene_3139_tx_7 4 + 543824 544301 . 1 478 0 -chrVII 543824 544440 HC_gene_3139_tx_9 1 + 543824 544440 . 1 617 0 -chrVII 543979 544301 HC_gene_3139_tx_10 14 + 543979 544301 . 1 323 0 -chrVII 543979 544440 HC_gene_3139_tx_11 4 + 543979 544440 . 1 462 0 -chrVII 544286 544467 HC_gene_3573_tx_1 3 - 544286 544467 . 1 182 0 -chrVII 545248 545832 HC_gene_3140_tx_1 1 + 545248 545832 . 1 585 0 -chrVII 545248 545890 HC_gene_3140_tx_2 3 + 545248 545890 . 1 643 0 -chrVII 545248 545897 HC_gene_3140_tx_3 1 + 545248 545897 . 1 650 0 -chrVII 545248 545899 HC_gene_3140_tx_4 2 + 545248 545899 . 1 652 0 -chrVII 545248 545903 HC_gene_3140_tx_5 1 + 545248 545903 . 1 656 0 -chrVII 545432 546172 HC_gene_3574_tx_1 3 - 545432 546172 . 1 741 0 -chrVII 545585 546172 HC_gene_3574_tx_2 102 - 545585 546172 . 1 588 0 -chrVII 545844 546172 HC_gene_3574_tx_3 1 - 545844 546172 . 1 329 0 -chrVII 545873 546172 HC_gene_3574_tx_4 1 - 545873 546172 . 1 300 0 -chrVII 546409 547779 HC_gene_3141_tx_1 14 + 546409 547779 . 1 1371 0 -chrVII 546409 548033 HC_gene_3141_tx_2 10 + 546409 548033 . 1 1625 0 -chrVII 546564 547122 MC_gene_3575_tx_1 1 - 546564 547122 . 1 559 0 -chrVII 547836 548033 HC_gene_3141_tx_3 7 + 547836 548033 . 1 198 0 -chrVII 547836 554086 HC_gene_3141_tx_4 1 + 547836 554086 . 1 6251 0 -chrVII 548465 554086 HC_gene_3141_tx_5 1 + 548465 554086 . 2 2415,2908 0,2714 -chrVII 548465 554086 HC_gene_3141_tx_6 1 + 548465 554086 . 1 5622 0 -chrVII 553927 554567 HC_gene_3576_tx_1 1 - 553927 554567 . 1 641 0 -chrVII 553931 554715 HC_gene_3576_tx_2 1 - 553931 554715 . 1 785 0 -chrVII 553937 554715 HC_gene_3576_tx_3 1 - 553937 554715 . 1 779 0 -chrVII 553937 555062 HC_gene_3577_tx_1 4 - 553937 555062 . 1 1126 0 -chrVII 553939 554567 HC_gene_3576_tx_4 1 - 553939 554567 . 1 629 0 -chrVII 553939 555062 HC_gene_3577_tx_2 6 - 553939 555062 . 1 1124 0 -chrVII 553940 555062 HC_gene_3577_tx_3 1 - 553940 555062 . 1 1123 0 -chrVII 553942 555062 HC_gene_3577_tx_4 1 - 553942 555062 . 1 1121 0 -chrVII 553943 555062 HC_gene_3577_tx_5 1 - 553943 555062 . 2 747,76 0,1044 -chrVII 553944 555062 HC_gene_3577_tx_6 1 - 553944 555062 . 1 1119 0 -chrVII 553952 554567 HC_gene_3576_tx_5 1 - 553952 554567 . 1 616 0 -chrVII 553952 555062 HC_gene_3577_tx_7 2 - 553952 555062 . 1 1111 0 -chrVII 553953 555062 HC_gene_3577_tx_8 1 - 553953 555062 . 1 1110 0 -chrVII 553954 554567 HC_gene_3576_tx_6 1 - 553954 554567 . 1 614 0 -chrVII 553954 555062 HC_gene_3577_tx_9 1 - 553954 555062 . 1 1109 0 -chrVII 553955 554567 HC_gene_3576_tx_7 1 - 553955 554567 . 1 613 0 -chrVII 553955 554715 HC_gene_3576_tx_8 1 - 553955 554715 . 1 761 0 -chrVII 553955 555062 HC_gene_3577_tx_10 6 - 553955 555062 . 1 1108 0 -chrVII 553955 555062 HC_gene_3577_tx_11 1 - 553955 555062 . 2 759,200 0,908 -chrVII 553956 554567 HC_gene_3576_tx_9 1 - 553956 554567 . 1 612 0 -chrVII 553956 555062 HC_gene_3577_tx_12 9 - 553956 555062 . 1 1107 0 -chrVII 553957 555062 HC_gene_3577_tx_13 1 - 553957 555062 . 1 1106 0 -chrVII 553960 555062 HC_gene_3577_tx_14 1 - 553960 555062 . 1 1103 0 -chrVII 553961 554567 HC_gene_3576_tx_10 1 - 553961 554567 . 1 607 0 -chrVII 553961 554715 HC_gene_3576_tx_11 2 - 553961 554715 . 1 755 0 -chrVII 553961 555062 HC_gene_3577_tx_15 6 - 553961 555062 . 1 1102 0 -chrVII 553962 555062 HC_gene_3577_tx_16 1 - 553962 555062 . 1 1101 0 -chrVII 553963 554567 HC_gene_3576_tx_12 1 - 553963 554567 . 1 605 0 -chrVII 553963 555062 HC_gene_3577_tx_17 2 - 553963 555062 . 1 1100 0 -chrVII 553965 554567 HC_gene_3576_tx_13 2 - 553965 554567 . 1 603 0 -chrVII 553966 555062 HC_gene_3577_tx_18 3 - 553966 555062 . 1 1097 0 -chrVII 553967 554567 HC_gene_3576_tx_14 2 - 553967 554567 . 1 601 0 -chrVII 553967 555062 HC_gene_3577_tx_19 3 - 553967 555062 . 1 1096 0 -chrVII 553968 554715 HC_gene_3576_tx_15 1 - 553968 554715 . 1 748 0 -chrVII 553968 555062 HC_gene_3577_tx_20 1 - 553968 555062 . 1 1095 0 -chrVII 553972 555062 HC_gene_3577_tx_21 1 - 553972 555062 . 1 1091 0 -chrVII 553973 554567 HC_gene_3576_tx_16 1 - 553973 554567 . 1 595 0 -chrVII 553973 555062 HC_gene_3577_tx_22 9 - 553973 555062 . 1 1090 0 -chrVII 553973 555062 HC_gene_3577_tx_23 1 - 553973 555062 . 2 37,944 0,146 -chrVII 553974 554567 HC_gene_3576_tx_17 2 - 553974 554567 . 1 594 0 -chrVII 553974 554715 HC_gene_3576_tx_18 3 - 553974 554715 . 1 742 0 -chrVII 553974 555062 HC_gene_3577_tx_24 10 - 553974 555062 . 1 1089 0 -chrVII 553975 554715 HC_gene_3576_tx_19 1 - 553975 554715 . 1 741 0 -chrVII 553975 555062 HC_gene_3577_tx_25 1 - 553975 555062 . 1 1088 0 -chrVII 553977 554567 HC_gene_3576_tx_20 1 - 553977 554567 . 1 591 0 -chrVII 553978 554567 HC_gene_3576_tx_21 2 - 553978 554567 . 1 590 0 -chrVII 553978 555062 HC_gene_3577_tx_26 2 - 553978 555062 . 1 1085 0 -chrVII 553979 554567 HC_gene_3576_tx_22 1 - 553979 554567 . 1 589 0 -chrVII 553979 555062 HC_gene_3577_tx_27 1 - 553979 555062 . 1 1084 0 -chrVII 553986 554715 HC_gene_3576_tx_23 1 - 553986 554715 . 1 730 0 -chrVII 553986 555062 HC_gene_3577_tx_28 2 - 553986 555062 . 1 1077 0 -chrVII 553987 554715 HC_gene_3576_tx_24 1 - 553987 554715 . 1 729 0 -chrVII 553990 555062 HC_gene_3577_tx_29 2 - 553990 555062 . 1 1073 0 -chrVII 553991 554715 HC_gene_3576_tx_25 1 - 553991 554715 . 1 725 0 -chrVII 553991 555062 HC_gene_3577_tx_30 2 - 553991 555062 . 1 1072 0 -chrVII 553992 555062 HC_gene_3577_tx_31 1 - 553992 555062 . 1 1071 0 -chrVII 553994 554567 HC_gene_3576_tx_26 1 - 553994 554567 . 1 574 0 -chrVII 554639 555062 HC_gene_3577_tx_32 2 - 554639 555062 . 1 424 0 -chrVII 555784 556803 HC_gene_3142_tx_1 1431 + 555784 556803 . 2 47,496 0,524 -chrVII 555784 556803 HC_gene_3142_tx_2 65 + 555784 556803 . 1 1020 0 -chrVII 556340 556803 HC_gene_3142_tx_3 2679 + 556340 556803 . 1 464 0 -chrVII 556482 556803 HC_gene_3142_tx_4 92 + 556482 556803 . 1 322 0 -chrVII 556552 556857 LC_gene_3578_tx_1 1 - 556552 556857 . 1 306 0 -chrVII 556903 557186 HC_gene_3579_tx_1 46 - 556903 557186 . 1 284 0 -chrVII 556903 557513 HC_gene_3579_tx_2 925 - 556903 557513 . 1 611 0 -chrVII 557458 558857 HC_gene_3580_tx_1 1 - 557458 558857 . 1 1400 0 -chrVII 557458 558914 HC_gene_3580_tx_2 9 - 557458 558914 . 1 1457 0 -chrVII 557458 558997 HC_gene_3580_tx_3 1 - 557458 558997 . 1 1540 0 -chrVII 557458 559027 HC_gene_3580_tx_4 21 - 557458 559027 . 1 1570 0 -chrVII 557931 559027 HC_gene_3580_tx_5 1 - 557931 559027 . 1 1097 0 -chrVII 557938 558914 HC_gene_3580_tx_6 1 - 557938 558914 . 1 977 0 -chrVII 557941 559027 HC_gene_3580_tx_7 1 - 557941 559027 . 1 1087 0 -chrVII 558022 559412 HC_gene_3143_tx_1 1 + 558022 559412 . 1 1391 0 -chrVII 558022 559420 HC_gene_3143_tx_2 1 + 558022 559420 . 1 1399 0 -chrVII 558022 559459 HC_gene_3143_tx_3 1 + 558022 559459 . 1 1438 0 -chrVII 558132 558914 HC_gene_3580_tx_8 1 - 558132 558914 . 1 783 0 -chrVII 558133 559027 HC_gene_3580_tx_9 1 - 558133 559027 . 1 895 0 -chrVII 558136 558914 HC_gene_3580_tx_10 1 - 558136 558914 . 1 779 0 -chrVII 558139 558914 HC_gene_3580_tx_11 1 - 558139 558914 . 1 776 0 -chrVII 558140 558914 HC_gene_3580_tx_12 1 - 558140 558914 . 1 775 0 -chrVII 558141 558914 HC_gene_3580_tx_13 1 - 558141 558914 . 1 774 0 -chrVII 558155 559027 HC_gene_3580_tx_14 1 - 558155 559027 . 1 873 0 -chrVII 558156 558914 HC_gene_3580_tx_15 1 - 558156 558914 . 1 759 0 -chrVII 558161 558914 HC_gene_3580_tx_16 1 - 558161 558914 . 1 754 0 -chrVII 559197 559406 HC_gene_3144_tx_1 1 + 559197 559406 . 1 210 0 -chrVII 559197 559409 HC_gene_3144_tx_2 1 + 559197 559409 . 1 213 0 -chrVII 559197 559413 HC_gene_3144_tx_3 1 + 559197 559413 . 1 217 0 -chrVII 559197 559414 HC_gene_3144_tx_4 1 + 559197 559414 . 1 218 0 -chrVII 559197 559415 HC_gene_3144_tx_5 1 + 559197 559415 . 1 219 0 -chrVII 559197 559416 HC_gene_3144_tx_6 1 + 559197 559416 . 1 220 0 -chrVII 559197 559420 HC_gene_3144_tx_7 1 + 559197 559420 . 1 224 0 -chrVII 559197 559421 HC_gene_3144_tx_8 3 + 559197 559421 . 1 225 0 -chrVII 559197 559427 HC_gene_3144_tx_9 1 + 559197 559427 . 1 231 0 -chrVII 559197 559429 HC_gene_3144_tx_10 1 + 559197 559429 . 1 233 0 -chrVII 559197 559434 HC_gene_3144_tx_11 2 + 559197 559434 . 1 238 0 -chrVII 559197 559440 HC_gene_3144_tx_12 2 + 559197 559440 . 1 244 0 -chrVII 559197 559441 HC_gene_3144_tx_13 1 + 559197 559441 . 1 245 0 -chrVII 559197 559442 HC_gene_3144_tx_14 2 + 559197 559442 . 1 246 0 -chrVII 559197 559446 HC_gene_3144_tx_15 9 + 559197 559446 . 1 250 0 -chrVII 559197 559448 HC_gene_3144_tx_16 1 + 559197 559448 . 1 252 0 -chrVII 559197 559449 HC_gene_3144_tx_17 1 + 559197 559449 . 1 253 0 -chrVII 559197 559451 HC_gene_3144_tx_18 1 + 559197 559451 . 1 255 0 -chrVII 559197 559454 HC_gene_3144_tx_19 2 + 559197 559454 . 1 258 0 -chrVII 559197 559455 HC_gene_3144_tx_20 3 + 559197 559455 . 1 259 0 -chrVII 559197 559456 HC_gene_3144_tx_21 1 + 559197 559456 . 1 260 0 -chrVII 559197 559461 HC_gene_3144_tx_22 1 + 559197 559461 . 1 265 0 -chrVII 559197 559463 HC_gene_3144_tx_23 1 + 559197 559463 . 1 267 0 -chrVII 559197 559468 HC_gene_3144_tx_24 1 + 559197 559468 . 1 272 0 -chrVII 559197 559478 HC_gene_3144_tx_25 1 + 559197 559478 . 1 282 0 -chrVII 559197 559490 HC_gene_3144_tx_26 1 + 559197 559490 . 1 294 0 -chrVII 559197 559493 HC_gene_3144_tx_27 1 + 559197 559493 . 1 297 0 -chrVII 559197 559680 HC_gene_3144_tx_28 4 + 559197 559680 . 1 484 0 -chrVII 559263 560049 HC_gene_3581_tx_1 2 - 559263 560049 . 1 787 0 -chrVII 559327 560049 HC_gene_3581_tx_2 136 - 559327 560049 . 1 723 0 -chrVII 559327 560049 HC_gene_3581_tx_3 1 - 559327 560049 . 2 456,213 0,510 -chrVII 559415 560049 HC_gene_3581_tx_4 8 - 559415 560049 . 1 635 0 -chrVII 559416 560049 HC_gene_3581_tx_5 3 - 559416 560049 . 1 634 0 -chrVII 559418 560049 HC_gene_3581_tx_6 5 - 559418 560049 . 1 632 0 -chrVII 559419 560049 HC_gene_3581_tx_7 4 - 559419 560049 . 1 631 0 -chrVII 559420 560049 HC_gene_3581_tx_8 2 - 559420 560049 . 1 630 0 -chrVII 559421 560049 HC_gene_3581_tx_9 6 - 559421 560049 . 1 629 0 -chrVII 559422 560049 HC_gene_3581_tx_10 10 - 559422 560049 . 1 628 0 -chrVII 559423 560049 HC_gene_3581_tx_11 7 - 559423 560049 . 1 627 0 -chrVII 559424 560049 HC_gene_3581_tx_12 4 - 559424 560049 . 1 626 0 -chrVII 559426 560049 HC_gene_3581_tx_13 1 - 559426 560049 . 1 624 0 -chrVII 559428 560049 HC_gene_3581_tx_14 1 - 559428 560049 . 1 622 0 -chrVII 559429 560049 HC_gene_3581_tx_15 2 - 559429 560049 . 1 621 0 -chrVII 559430 560049 HC_gene_3581_tx_16 4 - 559430 560049 . 1 620 0 -chrVII 559431 560049 HC_gene_3581_tx_17 1 - 559431 560049 . 1 619 0 -chrVII 559432 560049 HC_gene_3581_tx_18 1 - 559432 560049 . 1 618 0 -chrVII 559435 560049 HC_gene_3581_tx_19 4 - 559435 560049 . 1 615 0 -chrVII 559436 560049 HC_gene_3581_tx_20 8 - 559436 560049 . 1 614 0 -chrVII 559437 560049 HC_gene_3581_tx_21 3 - 559437 560049 . 1 613 0 -chrVII 559440 560049 HC_gene_3581_tx_22 1 - 559440 560049 . 1 610 0 -chrVII 559442 560049 HC_gene_3581_tx_23 1 - 559442 560049 . 1 608 0 -chrVII 559443 560049 HC_gene_3581_tx_24 1 - 559443 560049 . 1 607 0 -chrVII 559444 560049 HC_gene_3581_tx_25 1 - 559444 560049 . 1 606 0 -chrVII 559445 560049 HC_gene_3581_tx_26 2 - 559445 560049 . 1 605 0 -chrVII 559446 560049 HC_gene_3581_tx_27 1 - 559446 560049 . 1 604 0 -chrVII 559448 560049 HC_gene_3581_tx_28 1 - 559448 560049 . 1 602 0 -chrVII 559450 560049 HC_gene_3581_tx_29 1 - 559450 560049 . 1 600 0 -chrVII 559451 560049 HC_gene_3581_tx_30 4 - 559451 560049 . 1 599 0 -chrVII 559452 560049 HC_gene_3581_tx_31 2 - 559452 560049 . 1 598 0 -chrVII 559456 560049 HC_gene_3581_tx_32 6 - 559456 560049 . 1 594 0 -chrVII 559457 560049 HC_gene_3581_tx_33 12 - 559457 560049 . 1 593 0 -chrVII 559457 560049 HC_gene_3581_tx_34 1 - 559457 560049 . 2 186,331 0,262 -chrVII 559462 560049 HC_gene_3581_tx_35 4 - 559462 560049 . 1 588 0 -chrVII 559463 560049 HC_gene_3581_tx_36 5 - 559463 560049 . 1 587 0 -chrVII 559464 560049 HC_gene_3581_tx_37 1 - 559464 560049 . 1 586 0 -chrVII 559468 560049 HC_gene_3581_tx_38 8 - 559468 560049 . 1 582 0 -chrVII 559471 560049 HC_gene_3581_tx_39 1 - 559471 560049 . 1 579 0 -chrVII 559472 560049 HC_gene_3581_tx_40 4 - 559472 560049 . 1 578 0 -chrVII 559473 560049 HC_gene_3581_tx_41 6 - 559473 560049 . 1 577 0 -chrVII 559473 561335 HC_gene_3582_tx_1 1 - 559473 561335 . 1 1863 0 -chrVII 559474 560049 HC_gene_3581_tx_42 1 - 559474 560049 . 1 576 0 -chrVII 559478 560049 HC_gene_3581_tx_43 1 - 559478 560049 . 1 572 0 -chrVII 559480 560049 HC_gene_3581_tx_44 4 - 559480 560049 . 1 570 0 -chrVII 559483 560049 HC_gene_3581_tx_45 1 - 559483 560049 . 1 567 0 -chrVII 559484 560049 HC_gene_3581_tx_46 1 - 559484 560049 . 1 566 0 -chrVII 559485 560049 HC_gene_3581_tx_47 2 - 559485 560049 . 1 565 0 -chrVII 559487 560049 HC_gene_3581_tx_48 1 - 559487 560049 . 1 563 0 -chrVII 559489 560049 HC_gene_3581_tx_49 1 - 559489 560049 . 1 561 0 -chrVII 559490 560049 HC_gene_3581_tx_50 2 - 559490 560049 . 1 560 0 -chrVII 559495 560049 HC_gene_3581_tx_51 1 - 559495 560049 . 1 555 0 -chrVII 559499 560049 HC_gene_3581_tx_52 1 - 559499 560049 . 1 551 0 -chrVII 559500 560049 HC_gene_3581_tx_53 1 - 559500 560049 . 1 550 0 -chrVII 559503 560049 HC_gene_3581_tx_54 2 - 559503 560049 . 1 547 0 -chrVII 559504 560049 HC_gene_3581_tx_55 1 - 559504 560049 . 1 546 0 -chrVII 559505 560049 HC_gene_3581_tx_56 3 - 559505 560049 . 1 545 0 -chrVII 559508 560049 HC_gene_3581_tx_57 1 - 559508 560049 . 1 542 0 -chrVII 559509 560049 HC_gene_3581_tx_58 7 - 559509 560049 . 1 541 0 -chrVII 559510 560049 HC_gene_3581_tx_59 3 - 559510 560049 . 1 540 0 -chrVII 559511 560049 HC_gene_3581_tx_60 1 - 559511 560049 . 1 539 0 -chrVII 559513 560049 HC_gene_3581_tx_61 3 - 559513 560049 . 1 537 0 -chrVII 559514 560049 HC_gene_3581_tx_62 5 - 559514 560049 . 1 536 0 -chrVII 559515 560049 HC_gene_3581_tx_63 2 - 559515 560049 . 1 535 0 -chrVII 559516 560049 HC_gene_3581_tx_64 20 - 559516 560049 . 1 534 0 -chrVII 559519 560049 HC_gene_3581_tx_65 5 - 559519 560049 . 1 531 0 -chrVII 559520 560049 HC_gene_3581_tx_66 1 - 559520 560049 . 1 530 0 -chrVII 559521 560049 HC_gene_3581_tx_67 2 - 559521 560049 . 1 529 0 -chrVII 559522 560049 HC_gene_3581_tx_68 26 - 559522 560049 . 1 528 0 -chrVII 559523 560049 HC_gene_3581_tx_69 34 - 559523 560049 . 1 527 0 -chrVII 559525 560049 HC_gene_3581_tx_70 2 - 559525 560049 . 1 525 0 -chrVII 559526 560049 HC_gene_3581_tx_71 3 - 559526 560049 . 1 524 0 -chrVII 559528 560049 HC_gene_3581_tx_72 2 - 559528 560049 . 1 522 0 -chrVII 559529 560049 HC_gene_3581_tx_73 1 - 559529 560049 . 1 521 0 -chrVII 559530 560049 HC_gene_3581_tx_74 2 - 559530 560049 . 1 520 0 -chrVII 559534 560049 HC_gene_3581_tx_75 1 - 559534 560049 . 1 516 0 -chrVII 559537 560049 HC_gene_3581_tx_76 3 - 559537 560049 . 1 513 0 -chrVII 559538 560049 HC_gene_3581_tx_77 1 - 559538 560049 . 1 512 0 -chrVII 559539 560049 HC_gene_3581_tx_78 55 - 559539 560049 . 1 511 0 -chrVII 559539 560049 HC_gene_3581_tx_79 1 - 559539 560049 . 2 300,119 0,392 -chrVII 559540 560049 HC_gene_3581_tx_80 3 - 559540 560049 . 1 510 0 -chrVII 559541 560049 HC_gene_3581_tx_81 68 - 559541 560049 . 1 509 0 -chrVII 559542 560049 HC_gene_3581_tx_82 103 - 559542 560049 . 1 508 0 -chrVII 559543 560049 HC_gene_3581_tx_83 20 - 559543 560049 . 1 507 0 -chrVII 559544 560049 HC_gene_3581_tx_84 2 - 559544 560049 . 1 506 0 -chrVII 559545 560049 HC_gene_3581_tx_85 1 - 559545 560049 . 1 505 0 -chrVII 559546 560049 HC_gene_3581_tx_86 11 - 559546 560049 . 1 504 0 -chrVII 559547 560049 HC_gene_3581_tx_87 8 - 559547 560049 . 1 503 0 -chrVII 559548 560049 HC_gene_3581_tx_88 27 - 559548 560049 . 1 502 0 -chrVII 559548 561335 HC_gene_3582_tx_2 1 - 559548 561335 . 1 1788 0 -chrVII 559550 560049 HC_gene_3581_tx_89 85 - 559550 560049 . 1 500 0 -chrVII 559551 560049 HC_gene_3581_tx_90 40 - 559551 560049 . 1 499 0 -chrVII 559552 560049 HC_gene_3581_tx_91 58 - 559552 560049 . 1 498 0 -chrVII 559553 560049 HC_gene_3581_tx_92 9 - 559553 560049 . 1 497 0 -chrVII 559554 560049 HC_gene_3581_tx_93 4 - 559554 560049 . 1 496 0 -chrVII 559555 560049 HC_gene_3581_tx_94 16 - 559555 560049 . 1 495 0 -chrVII 559556 560049 HC_gene_3581_tx_95 50 - 559556 560049 . 1 494 0 -chrVII 559557 560049 HC_gene_3581_tx_96 6 - 559557 560049 . 1 493 0 -chrVII 559558 560049 HC_gene_3581_tx_97 10 - 559558 560049 . 1 492 0 -chrVII 559559 560049 HC_gene_3581_tx_98 19 - 559559 560049 . 1 491 0 -chrVII 559560 560049 HC_gene_3581_tx_99 216 - 559560 560049 . 1 490 0 -chrVII 559561 560049 HC_gene_3581_tx_100 57 - 559561 560049 . 1 489 0 -chrVII 559561 561335 HC_gene_3582_tx_3 1 - 559561 561335 . 1 1775 0 -chrVII 559562 560049 HC_gene_3581_tx_101 72 - 559562 560049 . 1 488 0 -chrVII 560342 561412 HC_gene_3145_tx_1 19 + 560342 561412 . 1 1071 0 -chrVII 560543 561412 HC_gene_3145_tx_2 108 + 560543 561412 . 1 870 0 -chrVII 560680 561412 HC_gene_3145_tx_3 10 + 560680 561412 . 1 733 0 -chrVII 560828 561412 HC_gene_3145_tx_4 7 + 560828 561412 . 1 585 0 -chrVII 561102 561412 HC_gene_3145_tx_5 9 + 561102 561412 . 1 311 0 -chrVII 561494 561692 MC_gene_3583_tx_1 1 - 561494 561692 . 1 199 0 -chrVII 567865 568541 MC_gene_3584_tx_1 1 - 567865 568541 . 1 677 0 -chrVII 567873 567984 MC_gene_3146_tx_1 1 + 567873 567984 . 1 112 0 -chrVII 568791 574461 MC_gene_3585_tx_1 1 - 568791 574461 . 1 5671 0 -chrVII 574670 574845 MC_gene_3147_tx_1 1 + 574670 574845 . 1 176 0 -chrVII 574703 575251 LC_gene_3586_tx_1 1 - 574703 575251 . 1 549 0 -chrVII 574916 575251 HC_gene_3148_tx_1 3 + 574916 575251 . 1 336 0 -chrVII 574916 577116 HC_gene_3148_tx_2 1 + 574916 577116 . 1 2201 0 -chrVII 575171 577116 HC_gene_3148_tx_3 1 + 575171 577116 . 1 1946 0 -chrVII 575184 576927 HC_gene_3148_tx_4 3 + 575184 576927 . 1 1744 0 -chrVII 575184 577116 HC_gene_3148_tx_5 6 + 575184 577116 . 1 1933 0 -chrVII 575196 577116 HC_gene_3148_tx_6 1 + 575196 577116 . 1 1921 0 -chrVII 575393 576927 HC_gene_3148_tx_7 3 + 575393 576927 . 1 1535 0 -chrVII 575393 577116 HC_gene_3148_tx_8 6 + 575393 577116 . 1 1724 0 -chrVII 575598 576548 HC_gene_3587_tx_1 1 - 575598 576548 . 1 951 0 -chrVII 576944 579229 HC_gene_3149_tx_1 3 + 576944 579229 . 1 2286 0 -chrVII 576944 579229 HC_gene_3149_tx_2 1 + 576944 579229 . 2 1834,373 0,1913 -chrVII 577025 579274 HC_gene_3588_tx_1 3 - 577025 579274 . 1 2250 0 -chrVII 577133 579229 HC_gene_3149_tx_3 10 + 577133 579229 . 1 2097 0 -chrVII 577133 580451 HC_gene_3149_tx_4 2 + 577133 580451 . 1 3319 0 -chrVII 578346 579229 HC_gene_3149_tx_5 4 + 578346 579229 . 1 884 0 -chrVII 578346 580369 HC_gene_3149_tx_6 1 + 578346 580369 . 1 2024 0 -chrVII 579409 579879 LC_gene_3589_tx_1 1 - 579409 579879 . 1 471 0 -chrVII 579456 580369 HC_gene_3149_tx_7 25 + 579456 580369 . 1 914 0 -chrVII 579456 580451 HC_gene_3149_tx_8 19 + 579456 580451 . 1 996 0 -chrVII 579456 580451 HC_gene_3149_tx_9 1 + 579456 580451 . 2 842,81 0,915 -chrVII 579456 580451 HC_gene_3149_tx_10 1 + 579456 580451 . 2 206,723 0,273 -chrVII 579736 580369 HC_gene_3149_tx_11 7 + 579736 580369 . 1 634 0 -chrVII 579736 580451 HC_gene_3149_tx_12 1 + 579736 580451 . 1 716 0 -chrVII 579920 580369 HC_gene_3149_tx_13 7 + 579920 580369 . 1 450 0 -chrVII 579920 580451 HC_gene_3149_tx_14 8 + 579920 580451 . 1 532 0 -chrVII 580287 580698 HC_gene_3590_tx_1 6 - 580287 580698 . 1 412 0 -chrVII 580287 580890 HC_gene_3590_tx_2 10 - 580287 580890 . 1 604 0 -chrVII 580287 581125 HC_gene_3590_tx_3 5 - 580287 581125 . 1 839 0 -chrVII 580287 581251 HC_gene_3590_tx_4 2 - 580287 581251 . 1 965 0 -chrVII 580287 581370 HC_gene_3590_tx_5 3 - 580287 581370 . 1 1084 0 -chrVII 580287 581469 HC_gene_3590_tx_6 19 - 580287 581469 . 1 1183 0 -chrVII 580287 581607 HC_gene_3590_tx_7 2 - 580287 581607 . 1 1321 0 -chrVII 582080 584200 MC_gene_3150_tx_1 1 + 582080 584200 . 1 2121 0 -chrVII 582723 583278 HC_gene_3591_tx_1 10 - 582723 583278 . 1 556 0 -chrVII 582723 583511 HC_gene_3591_tx_2 12 - 582723 583511 . 1 789 0 -chrVII 582723 583652 HC_gene_3591_tx_3 7 - 582723 583652 . 1 930 0 -chrVII 582723 583968 HC_gene_3591_tx_4 71 - 582723 583968 . 1 1246 0 -chrVII 582723 583968 HC_gene_3591_tx_5 1 - 582723 583968 . 2 760,265 0,981 -chrVII 582723 583968 HC_gene_3591_tx_6 1 - 582723 583968 . 2 503,430 0,816 -chrVII 582723 584146 HC_gene_3591_tx_7 2 - 582723 584146 . 1 1424 0 -chrVII 584405 586396 HC_gene_3151_tx_1 2 + 584405 586396 . 1 1992 0 -chrVII 584764 586396 HC_gene_3151_tx_2 33 + 584764 586396 . 1 1633 0 -chrVII 584764 586396 HC_gene_3151_tx_3 1 + 584764 586396 . 2 680,882 0,751 -chrVII 584996 586396 HC_gene_3151_tx_4 7 + 584996 586396 . 1 1401 0 -chrVII 586300 588665 HC_gene_3592_tx_1 2 - 586300 588665 . 1 2366 0 -chrVII 586300 589505 HC_gene_3592_tx_2 6 - 586300 589505 . 1 3206 0 -chrVII 589770 590988 HC_gene_3152_tx_1 76 + 589770 590988 . 1 1219 0 -chrVII 589770 590988 HC_gene_3152_tx_2 1 + 589770 590988 . 2 792,385 0,834 -chrVII 589770 590988 HC_gene_3152_tx_3 1 + 589770 590988 . 2 218,721 0,498 -chrVII 589770 590988 HC_gene_3152_tx_4 1 + 589770 590988 . 2 543,628 0,591 -chrVII 589888 590988 HC_gene_3152_tx_5 5 + 589888 590988 . 1 1101 0 -chrVII 590499 590988 HC_gene_3152_tx_6 18 + 590499 590988 . 1 490 0 -chrVII 591154 591519 HC_gene_3593_tx_1 1 - 591154 591519 . 1 366 0 -chrVII 591154 591572 HC_gene_3593_tx_2 1 - 591154 591572 . 2 176,164 0,255 -chrVII 591154 591572 HC_gene_3593_tx_3 8 - 591154 591572 . 1 419 0 -chrVII 591154 591883 HC_gene_3593_tx_4 1 - 591154 591883 . 1 730 0 -chrVII 591265 592149 HC_gene_3153_tx_1 94 + 591265 592149 . 1 885 0 -chrVII 591485 592149 HC_gene_3153_tx_2 9 + 591485 592149 . 1 665 0 -chrVII 591713 592149 HC_gene_3153_tx_3 17 + 591713 592149 . 1 437 0 -chrVII 591715 592310 HC_gene_3594_tx_1 2 - 591715 592310 . 1 596 0 -chrVII 591893 592310 HC_gene_3594_tx_2 2 - 591893 592310 . 1 418 0 -chrVII 591895 592310 HC_gene_3594_tx_3 1 - 591895 592310 . 1 416 0 -chrVII 591896 592310 HC_gene_3594_tx_4 1 - 591896 592310 . 1 415 0 -chrVII 591905 592520 HC_gene_3594_tx_6 1 - 591905 592520 . 1 616 0 -chrVII 591907 592310 HC_gene_3594_tx_5 1 - 591907 592310 . 1 404 0 -chrVII 592012 592310 HC_gene_3594_tx_8 10 - 592012 592310 . 1 299 0 -chrVII 592012 592520 HC_gene_3594_tx_7 6 - 592012 592520 . 1 509 0 -chrVII 593134 593411 HC_gene_3154_tx_1 43 + 593134 593411 . 1 278 0 -chrVII 593464 594856 MC_gene_3155_tx_1 1 + 593464 594856 . 1 1393 0 -chrVII 593486 594155 MC_gene_3595_tx_1 1 - 593486 594155 . 1 670 0 -chrVII 594053 594877 MC_gene_3156_tx_1 1 + 594053 594877 . 1 825 0 -chrVII 594926 595545 HC_gene_3596_tx_1 1 - 594926 595545 . 1 620 0 -chrVII 594926 595941 HC_gene_3596_tx_2 8 - 594926 595941 . 1 1016 0 -chrVII 596521 598682 HC_gene_3157_tx_1 15 + 596521 598682 . 1 2162 0 -chrVII 596521 598682 HC_gene_3157_tx_2 1 + 596521 598682 . 2 994,526 0,1636 -chrVII 596521 598824 HC_gene_3157_tx_3 42 + 596521 598824 . 1 2304 0 -chrVII 596783 598682 HC_gene_3157_tx_4 3 + 596783 598682 . 1 1900 0 -chrVII 596783 598824 HC_gene_3157_tx_5 6 + 596783 598824 . 1 2042 0 -chrVII 597127 598824 HC_gene_3157_tx_6 7 + 597127 598824 . 1 1698 0 -chrVII 597127 598824 HC_gene_3157_tx_7 1 + 597127 598824 . 2 331,822 0,876 -chrVII 597127 599323 HC_gene_3157_tx_9 1 + 597127 599323 . 1 2197 0 -chrVII 597203 598682 HC_gene_3157_tx_8 1 + 597203 598682 . 1 1480 0 -chrVII 597982 598682 HC_gene_3157_tx_10 8 + 597982 598682 . 1 701 0 -chrVII 597982 598824 HC_gene_3157_tx_11 26 + 597982 598824 . 1 843 0 -chrVII 597982 598824 HC_gene_3157_tx_12 1 + 597982 598824 . 2 290,486 0,357 -chrVII 598311 598682 HC_gene_3157_tx_13 8 + 598311 598682 . 1 372 0 -chrVII 598311 598824 HC_gene_3157_tx_14 18 + 598311 598824 . 1 514 0 -chrVII 599286 601289 HC_gene_3158_tx_1 1 + 599286 601289 . 1 2004 0 -chrVII 599383 601289 HC_gene_3158_tx_2 94 + 599383 601289 . 1 1907 0 -chrVII 599383 601289 HC_gene_3158_tx_3 1 + 599383 601289 . 2 1030,790 0,1117 -chrVII 599383 601289 HC_gene_3158_tx_4 1 + 599383 601289 . 2 1150,695 0,1212 -chrVII 599383 601289 HC_gene_3158_tx_5 1 + 599383 601289 . 2 440,967 0,940 -chrVII 600086 601289 HC_gene_3158_tx_6 23 + 600086 601289 . 1 1204 0 -chrVII 600533 601289 HC_gene_3158_tx_7 24 + 600533 601289 . 1 757 0 -chrVII 601154 601339 MC_gene_3597_tx_1 1 - 601154 601339 . 1 186 0 -chrVII 601612 604528 HC_gene_3159_tx_1 8 + 601612 604528 . 1 2917 0 -chrVII 601612 604528 HC_gene_3159_tx_2 1 + 601612 604528 . 2 284,2423 0,494 -chrVII 603344 604528 HC_gene_3159_tx_3 6 + 603344 604528 . 1 1185 0 -chrVII 604433 605507 HC_gene_3598_tx_1 4 - 604433 605507 . 1 1075 0 -chrVII 604433 605580 HC_gene_3598_tx_2 20 - 604433 605580 . 1 1148 0 -chrVII 605076 605730 LC_gene_3160_tx_1 1 + 605076 605730 . 1 655 0 -chrVII 605796 606064 HC_gene_3161_tx_1 2 + 605796 606064 . 1 269 0 -chrVII 606114 607427 HC_gene_3162_tx_1 16 + 606114 607427 . 1 1314 0 -chrVII 606114 607427 HC_gene_3162_tx_2 1 + 606114 607427 . 2 342,919 0,395 -chrVII 606114 607590 HC_gene_3162_tx_3 5 + 606114 607590 . 1 1477 0 -chrVII 606202 607427 HC_gene_3162_tx_4 2 + 606202 607427 . 1 1226 0 -chrVII 608615 609191 MC_gene_3163_tx_1 1 + 608615 609191 . 1 577 0 -chrVII 608811 609528 MC_gene_3599_tx_1 1 - 608811 609528 . 1 718 0 -chrVII 609408 609687 HC_gene_3164_tx_1 5 + 609408 609687 . 1 280 0 -chrVII 610281 611431 LC_gene_3600_tx_1 1 - 610281 611431 . 1 1151 0 -chrVII 610517 611678 HC_gene_3165_tx_1 2 + 610517 611678 . 1 1162 0 -chrVII 610517 611679 HC_gene_3165_tx_2 2 + 610517 611679 . 1 1163 0 -chrVII 610517 611680 HC_gene_3165_tx_3 3 + 610517 611680 . 1 1164 0 -chrVII 610517 611681 HC_gene_3165_tx_4 1 + 610517 611681 . 1 1165 0 -chrVII 610517 611683 HC_gene_3165_tx_5 1 + 610517 611683 . 1 1167 0 -chrVII 610517 611684 HC_gene_3165_tx_6 1 + 610517 611684 . 1 1168 0 -chrVII 610517 611685 HC_gene_3165_tx_7 3 + 610517 611685 . 1 1169 0 -chrVII 610517 611686 HC_gene_3165_tx_8 2 + 610517 611686 . 1 1170 0 -chrVII 610517 611687 HC_gene_3165_tx_9 2 + 610517 611687 . 1 1171 0 -chrVII 610517 611689 HC_gene_3165_tx_10 1 + 610517 611689 . 1 1173 0 -chrVII 610517 611690 HC_gene_3165_tx_11 1 + 610517 611690 . 1 1174 0 -chrVII 610517 611691 HC_gene_3165_tx_12 1 + 610517 611691 . 1 1175 0 -chrVII 610517 611692 HC_gene_3165_tx_13 1 + 610517 611692 . 1 1176 0 -chrVII 610517 611694 HC_gene_3165_tx_14 1 + 610517 611694 . 1 1178 0 -chrVII 610517 611695 HC_gene_3165_tx_15 1 + 610517 611695 . 1 1179 0 -chrVII 610517 611696 HC_gene_3165_tx_16 1 + 610517 611696 . 1 1180 0 -chrVII 610517 611698 HC_gene_3165_tx_17 1 + 610517 611698 . 1 1182 0 -chrVII 610517 611699 HC_gene_3165_tx_18 2 + 610517 611699 . 1 1183 0 -chrVII 610517 611707 HC_gene_3165_tx_19 1 + 610517 611707 . 1 1191 0 -chrVII 610517 611798 HC_gene_3165_tx_20 194 + 610517 611798 . 1 1282 0 -chrVII 610517 611798 HC_gene_3165_tx_21 1 + 610517 611798 . 2 1207,28 0,1254 -chrVII 610517 611798 HC_gene_3165_tx_22 1 + 610517 611798 . 2 327,853 0,429 -chrVII 610517 611798 HC_gene_3165_tx_23 1 + 610517 611798 . 2 329,664 0,618 -chrVII 610517 611798 HC_gene_3165_tx_24 1 + 610517 611798 . 2 556,636 0,646 -chrVII 610517 611798 HC_gene_3165_tx_25 1 + 610517 611798 . 2 64,879 0,403 -chrVII 610903 611686 HC_gene_3165_tx_26 1 + 610903 611686 . 1 784 0 -chrVII 610903 611687 HC_gene_3165_tx_27 1 + 610903 611687 . 1 785 0 -chrVII 610903 611694 HC_gene_3165_tx_28 1 + 610903 611694 . 1 792 0 -chrVII 610903 611698 HC_gene_3165_tx_29 1 + 610903 611698 . 1 796 0 -chrVII 610903 611699 HC_gene_3165_tx_30 1 + 610903 611699 . 1 797 0 -chrVII 610903 611798 HC_gene_3165_tx_31 40 + 610903 611798 . 1 896 0 -chrVII 611028 611680 HC_gene_3165_tx_32 2 + 611028 611680 . 1 653 0 -chrVII 611028 611687 HC_gene_3165_tx_33 1 + 611028 611687 . 1 660 0 -chrVII 611028 611698 HC_gene_3165_tx_34 1 + 611028 611698 . 1 671 0 -chrVII 611028 611707 HC_gene_3165_tx_35 1 + 611028 611707 . 1 680 0 -chrVII 611028 611798 HC_gene_3165_tx_36 35 + 611028 611798 . 1 771 0 -chrVII 611159 611678 HC_gene_3165_tx_37 1 + 611159 611678 . 1 520 0 -chrVII 611159 611680 HC_gene_3165_tx_38 2 + 611159 611680 . 1 522 0 -chrVII 611159 611685 HC_gene_3165_tx_39 1 + 611159 611685 . 1 527 0 -chrVII 611159 611686 HC_gene_3165_tx_40 2 + 611159 611686 . 1 528 0 -chrVII 611159 611690 HC_gene_3165_tx_41 2 + 611159 611690 . 1 532 0 -chrVII 611159 611691 HC_gene_3165_tx_42 1 + 611159 611691 . 1 533 0 -chrVII 611159 611696 HC_gene_3165_tx_43 1 + 611159 611696 . 1 538 0 -chrVII 611159 611698 HC_gene_3165_tx_44 3 + 611159 611698 . 1 540 0 -chrVII 611159 611699 HC_gene_3165_tx_45 1 + 611159 611699 . 1 541 0 -chrVII 611159 611700 HC_gene_3165_tx_46 1 + 611159 611700 . 1 542 0 -chrVII 611159 611798 HC_gene_3165_tx_47 39 + 611159 611798 . 1 640 0 -chrVII 611159 611798 HC_gene_3165_tx_48 1 + 611159 611798 . 2 327,131 0,509 -chrVII 611260 611685 HC_gene_3165_tx_49 1 + 611260 611685 . 1 426 0 -chrVII 611260 611698 HC_gene_3165_tx_50 1 + 611260 611698 . 1 439 0 -chrVII 611260 611798 HC_gene_3165_tx_51 13 + 611260 611798 . 1 539 0 -chrVII 611319 611678 HC_gene_3165_tx_52 1 + 611319 611678 . 1 360 0 -chrVII 611319 611680 HC_gene_3165_tx_53 1 + 611319 611680 . 1 362 0 -chrVII 611319 611686 HC_gene_3165_tx_54 1 + 611319 611686 . 1 368 0 -chrVII 611319 611693 HC_gene_3165_tx_55 1 + 611319 611693 . 1 375 0 -chrVII 611319 611798 HC_gene_3165_tx_56 28 + 611319 611798 . 1 480 0 -chrVII 611569 611798 HC_gene_3165_tx_57 3 + 611569 611798 . 1 230 0 -chrVII 611784 612260 HC_gene_3601_tx_1 52 - 611784 612260 . 1 477 0 -chrVII 611784 612501 HC_gene_3601_tx_2 38 - 611784 612501 . 1 718 0 -chrVII 611784 613117 HC_gene_3601_tx_3 39 - 611784 613117 . 1 1334 0 -chrVII 611784 613199 HC_gene_3601_tx_4 9 - 611784 613199 . 1 1416 0 -chrVII 611784 613584 HC_gene_3601_tx_5 13 - 611784 613584 . 1 1801 0 -chrVII 611784 613584 HC_gene_3601_tx_6 1 - 611784 613584 . 2 703,1046 0,755 -chrVII 611784 614325 HC_gene_3601_tx_7 4 - 611784 614325 . 1 2542 0 -chrVII 611784 615322 HC_gene_3601_tx_8 4 - 611784 615322 . 1 3539 0 -chrVII 611784 615559 HC_gene_3601_tx_9 3 - 611784 615559 . 1 3776 0 -chrVII 611784 615617 HC_gene_3601_tx_10 1 - 611784 615617 . 1 3834 0 -chrVII 611784 615825 HC_gene_3601_tx_11 1 - 611784 615825 . 2 1339,1525 0,2517 -chrVII 611784 615825 HC_gene_3601_tx_12 4 - 611784 615825 . 1 4042 0 -chrVII 611784 615993 HC_gene_3601_tx_13 34 - 611784 615993 . 1 4210 0 -chrVII 611784 615993 HC_gene_3601_tx_14 1 - 611784 615993 . 2 3041,1103 0,3107 -chrVII 611784 615993 HC_gene_3601_tx_15 1 - 611784 615993 . 2 1978,2047 0,2163 -chrVII 611784 615993 HC_gene_3601_tx_16 1 - 611784 615993 . 5 663,710,85,29,1365 0,882,1660,1869,2845 -chrVII 616027 617314 HC_gene_3602_tx_1 11 - 616027 617314 . 1 1288 0 -chrVII 616249 617085 HC_gene_3602_tx_3 4 - 616249 617085 . 1 837 0 -chrVII 616249 617314 HC_gene_3602_tx_2 13 - 616249 617314 . 1 1066 0 -chrVII 616316 618042 HC_gene_3166_tx_1 1 + 616316 618042 . 1 1727 0 -chrVII 617395 617842 HC_gene_3603_tx_1 224 - 617395 617842 . 1 448 0 -chrVII 617980 619877 HC_gene_3604_tx_1 19 - 617980 619877 . 1 1898 0 -chrVII 617980 619877 HC_gene_3604_tx_2 1 - 617980 619877 . 2 1241,573 0,1325 -chrVII 620471 621906 MC_gene_3167_tx_1 1 + 620471 621906 . 1 1436 0 -chrVII 620756 621803 HC_gene_3605_tx_1 2 - 620756 621803 . 1 1048 0 -chrVII 622029 622357 HC_gene_3168_tx_1 2 + 622029 622357 . 1 329 0 -chrVII 622087 622357 HC_gene_3168_tx_2 22 + 622087 622357 . 1 271 0 -chrVII 622259 623551 MC_gene_3606_tx_1 1 - 622259 623551 . 1 1293 0 -chrVII 624924 627121 MC_gene_3607_tx_1 1 - 624924 627121 . 1 2198 0 -chrVII 627261 627533 HC_gene_3608_tx_1 3 - 627261 627533 . 1 273 0 -chrVII 627299 627737 HC_gene_3169_tx_1 2 + 627299 627737 . 1 439 0 -chrVII 627778 631399 HC_gene_3170_tx_1 1 + 627778 631399 . 2 3156,371 0,3251 -chrVII 627778 631399 HC_gene_3170_tx_2 1 + 627778 631399 . 1 3622 0 -chrVII 631288 633848 HC_gene_3609_tx_1 1 - 631288 633848 . 1 2561 0 -chrVII 631288 634121 HC_gene_3609_tx_2 2 - 631288 634121 . 1 2834 0 -chrVII 631367 633848 HC_gene_3609_tx_3 1 - 631367 633848 . 2 1193,758 0,1724 -chrVII 634263 635591 HC_gene_3171_tx_1 10 + 634263 635591 . 1 1329 0 -chrVII 634359 635591 HC_gene_3171_tx_2 5 + 634359 635591 . 1 1233 0 -chrVII 634522 635062 LC_gene_3610_tx_1 1 - 634522 635062 . 1 541 0 -chrVII 634787 635591 HC_gene_3171_tx_3 1 + 634787 635591 . 2 52,607 0,198 -chrVII 634787 635591 HC_gene_3171_tx_4 5 + 634787 635591 . 1 805 0 -chrVII 634979 635591 HC_gene_3171_tx_5 7 + 634979 635591 . 1 613 0 -chrVII 635078 635591 HC_gene_3171_tx_6 9 + 635078 635591 . 1 514 0 -chrVII 635549 636916 HC_gene_3611_tx_1 5 - 635549 636916 . 1 1368 0 -chrVII 635656 636916 HC_gene_3611_tx_2 7 - 635656 636916 . 1 1261 0 -chrVII 635699 636453 HC_gene_3172_tx_1 122 + 635699 636453 . 1 755 0 -chrVII 635844 636453 HC_gene_3172_tx_2 4 + 635844 636453 . 1 610 0 -chrVII 635897 636453 HC_gene_3172_tx_3 4 + 635897 636453 . 1 557 0 -chrVII 636985 637629 HC_gene_3612_tx_1 81 - 636985 637629 . 1 645 0 -chrVII 637666 639521 HC_gene_3613_tx_1 15 - 637666 639521 . 1 1856 0 -chrVII 637774 638400 HC_gene_3173_tx_1 2 + 637774 638400 . 1 627 0 -chrVII 639642 640429 LC_gene_3174_tx_1 1 + 639642 640429 . 1 788 0 -chrVII 639697 640115 HC_gene_3614_tx_1 25 - 639697 640115 . 1 419 0 -chrVII 639697 640405 HC_gene_3614_tx_2 168 - 639697 640405 . 1 709 0 -chrVII 640803 640921 HC_gene_3175_tx_1 1 + 640803 640921 . 1 119 0 -chrVII 640803 641925 HC_gene_3175_tx_2 87 + 640803 641925 . 1 1123 0 -chrVII 640803 641925 HC_gene_3175_tx_3 1 + 640803 641925 . 2 61,443 0,680 -chrVII 640803 641925 HC_gene_3175_tx_4 1 + 640803 641925 . 2 86,745 0,378 -chrVII 640803 641925 HC_gene_3175_tx_5 1 + 640803 641925 . 2 254,823 0,300 -chrVII 640803 641925 HC_gene_3175_tx_6 1 + 640803 641925 . 2 990,42 0,1081 -chrVII 640803 642001 HC_gene_3175_tx_7 3 + 640803 642001 . 1 1199 0 -chrVII 641108 641925 HC_gene_3175_tx_8 17 + 641108 641925 . 1 818 0 -chrVII 641962 643810 HC_gene_3615_tx_1 1 - 641962 643810 . 1 1849 0 -chrVII 641980 643096 HC_gene_3176_tx_1 86 + 641980 643096 . 1 1117 0 -chrVII 642221 643096 HC_gene_3176_tx_2 15 + 642221 643096 . 1 876 0 -chrVII 642841 643810 HC_gene_3615_tx_2 1 - 642841 643810 . 1 970 0 -chrVII 643035 643810 HC_gene_3615_tx_3 105 - 643035 643810 . 1 776 0 -chrVII 643035 643810 HC_gene_3615_tx_4 1 - 643035 643810 . 2 451,126 0,650 -chrVII 643996 644744 HC_gene_3177_tx_1 402 + 643996 644744 . 1 749 0 -chrVII 643996 644843 HC_gene_3177_tx_2 14 + 643996 644843 . 1 848 0 -chrVII 644182 644744 HC_gene_3177_tx_3 19 + 644182 644744 . 1 563 0 -chrVII 644736 645171 HC_gene_3616_tx_1 9 - 644736 645171 . 1 436 0 -chrVII 644736 645414 HC_gene_3616_tx_2 22 - 644736 645414 . 1 679 0 -chrVII 644736 645414 HC_gene_3616_tx_3 1 - 644736 645414 . 2 51,553 0,126 -chrVII 644736 645503 HC_gene_3616_tx_4 8 - 644736 645503 . 1 768 0 -chrVII 644736 645503 HC_gene_3616_tx_5 1 - 644736 645503 . 2 51,657 0,111 -chrVII 644736 646848 HC_gene_3616_tx_6 20 - 644736 646848 . 1 2113 0 -chrVII 644736 646848 HC_gene_3616_tx_7 1 - 644736 646848 . 2 34,2029 0,84 -chrVII 644736 646848 HC_gene_3616_tx_8 1 - 644736 646848 . 2 1000,921 0,1192 -chrVII 644736 646848 HC_gene_3616_tx_9 1 - 644736 646848 . 2 51,1995 0,118 -chrVII 644736 646848 HC_gene_3616_tx_10 1 - 644736 646848 . 2 1490,529 0,1584 -chrVII 647046 648082 HC_gene_3617_tx_1 43 - 647046 648082 . 1 1037 0 -chrVII 648295 648802 HC_gene_3618_tx_1 202 - 648295 648802 . 1 508 0 -chrVII 648295 648931 HC_gene_3618_tx_2 1815 - 648295 648931 . 1 637 0 -chrVII 648295 649014 HC_gene_3618_tx_3 40 - 648295 649014 . 1 720 0 -chrVII 649286 649554 MC_gene_3178_tx_1 1 + 649286 649554 . 1 269 0 -chrVII 649315 649498 HC_gene_3619_tx_1 2 - 649315 649498 . 1 184 0 -chrVII 649315 649549 HC_gene_3619_tx_2 2 - 649315 649549 . 1 235 0 -chrVII 649315 649627 HC_gene_3619_tx_3 36 - 649315 649627 . 1 313 0 -chrVII 649315 649761 HC_gene_3619_tx_4 227 - 649315 649761 . 1 447 0 -chrVII 649315 650042 HC_gene_3619_tx_5 63 - 649315 650042 . 1 728 0 -chrVII 649315 650349 HC_gene_3619_tx_6 34 - 649315 650349 . 1 1035 0 -chrVII 649315 650726 HC_gene_3619_tx_7 320 - 649315 650726 . 1 1412 0 -chrVII 649315 650915 HC_gene_3619_tx_8 2 - 649315 650915 . 1 1601 0 -chrVII 650854 651273 MC_gene_3179_tx_1 1 + 650854 651273 . 1 420 0 -chrVII 651228 653152 LC_gene_3620_tx_1 1 - 651228 653152 . 1 1925 0 -chrVII 651717 652988 LC_gene_3180_tx_1 1 + 651717 652988 . 1 1272 0 -chrVII 653461 654036 HC_gene_3621_tx_1 1 - 653461 654036 . 1 576 0 -chrVII 653746 654362 LC_gene_3181_tx_1 1 + 653746 654362 . 1 617 0 -chrVII 654433 656409 HC_gene_3182_tx_1 1 + 654433 656409 . 1 1977 0 -chrVII 654608 656409 HC_gene_3182_tx_2 1 + 654608 656409 . 2 570,1063 0,739 -chrVII 654608 656409 HC_gene_3182_tx_3 1 + 654608 656409 . 1 1802 0 -chrVII 654815 656409 HC_gene_3182_tx_4 2 + 654815 656409 . 1 1595 0 -chrVII 654992 656409 HC_gene_3182_tx_5 1 + 654992 656409 . 1 1418 0 -chrVII 655249 656409 HC_gene_3182_tx_6 2 + 655249 656409 . 1 1161 0 -chrVII 655331 656409 HC_gene_3182_tx_7 3 + 655331 656409 . 1 1079 0 -chrVII 655775 656409 HC_gene_3182_tx_8 2 + 655775 656409 . 1 635 0 -chrVII 656262 656462 MC_gene_3622_tx_1 1 - 656262 656462 . 1 201 0 -chrVII 656319 656925 MC_gene_3623_tx_1 1 - 656319 656925 . 1 607 0 -chrVII 656693 659901 HC_gene_3183_tx_1 13 + 656693 659901 . 1 3209 0 -chrVII 656693 659901 HC_gene_3183_tx_2 1 + 656693 659901 . 2 2242,818 0,2391 -chrVII 659326 659901 HC_gene_3183_tx_3 1 + 659326 659901 . 2 66,428 0,148 -chrVII 659326 659901 HC_gene_3183_tx_4 17 + 659326 659901 . 1 576 0 -chrVII 660075 661532 HC_gene_3184_tx_1 3 + 660075 661532 . 1 1458 0 -chrVII 662089 663608 HC_gene_3185_tx_1 1 + 662089 663608 . 1 1520 0 -chrVII 662089 663713 HC_gene_3185_tx_2 2 + 662089 663713 . 1 1625 0 -chrVII 662783 663713 HC_gene_3185_tx_3 2 + 662783 663713 . 1 931 0 -chrVII 663187 663713 HC_gene_3185_tx_4 1 + 663187 663713 . 1 527 0 -chrVII 665571 666167 HC_gene_3186_tx_1 24 + 665571 666167 . 1 597 0 -chrVII 666271 667933 HC_gene_3187_tx_1 11 + 666271 667933 . 1 1663 0 -chrVII 666271 667933 HC_gene_3187_tx_2 1 + 666271 667933 . 2 849,767 0,896 -chrVII 666449 667933 HC_gene_3187_tx_3 1 + 666449 667933 . 1 1485 0 -chrVII 666839 667234 MC_gene_3624_tx_1 1 - 666839 667234 . 1 396 0 -chrVII 666931 667805 MC_gene_3625_tx_1 1 - 666931 667805 . 1 875 0 -chrVII 668129 669987 HC_gene_3188_tx_1 2 + 668129 669987 . 1 1859 0 -chrVII 668129 670084 HC_gene_3188_tx_2 22 + 668129 670084 . 1 1956 0 -chrVII 668129 670084 HC_gene_3188_tx_3 1 + 668129 670084 . 2 1178,712 0,1244 -chrVII 668129 670185 HC_gene_3188_tx_4 7 + 668129 670185 . 1 2057 0 -chrVII 668129 670185 HC_gene_3188_tx_5 1 + 668129 670185 . 2 1207,803 0,1254 -chrVII 668212 670084 HC_gene_3188_tx_6 1 + 668212 670084 . 1 1873 0 -chrVII 668395 669027 HC_gene_3188_tx_8 1 + 668395 669027 . 1 633 0 -chrVII 668395 670084 HC_gene_3188_tx_7 2 + 668395 670084 . 1 1690 0 -chrVII 669982 670564 HC_gene_3626_tx_1 3 - 669982 670564 . 1 583 0 -chrVII 670337 671994 HC_gene_3189_tx_1 20 + 670337 671994 . 1 1658 0 -chrVII 670337 671994 HC_gene_3189_tx_2 1 + 670337 671994 . 2 146,1389 0,269 -chrVII 670337 671994 HC_gene_3189_tx_3 1 + 670337 671994 . 2 1130,440 0,1218 -chrVII 670337 671994 HC_gene_3189_tx_4 1 + 670337 671994 . 2 863,726 0,932 -chrVII 670706 671994 HC_gene_3189_tx_5 2 + 670706 671994 . 1 1289 0 -chrVII 670825 671994 HC_gene_3189_tx_6 8 + 670825 671994 . 1 1170 0 -chrVII 671003 671994 HC_gene_3189_tx_7 3 + 671003 671994 . 1 992 0 -chrVII 671370 671866 LC_gene_3627_tx_1 1 - 671370 671866 . 1 497 0 -chrVII 671909 672384 MC_gene_3628_tx_1 1 - 671909 672384 . 1 476 0 -chrVII 672189 675585 HC_gene_3190_tx_1 1 + 672189 675585 . 2 1162,2200 0,1197 -chrVII 672246 675585 HC_gene_3190_tx_2 105 + 672246 675585 . 1 3340 0 -chrVII 672246 675585 HC_gene_3190_tx_3 1 + 672246 675585 . 2 463,2829 0,511 -chrVII 672246 675585 HC_gene_3190_tx_4 1 + 672246 675585 . 2 47,3086 0,254 -chrVII 672246 675585 HC_gene_3190_tx_5 1 + 672246 675585 . 2 3262,38 0,3302 -chrVII 672246 675585 HC_gene_3190_tx_6 1 + 672246 675585 . 2 3251,38 0,3302 -chrVII 672246 675585 HC_gene_3190_tx_7 1 + 672246 675585 . 3 307,293,2264 0,641,1076 -chrVII 672246 675693 HC_gene_3190_tx_8 1 + 672246 675693 . 1 3448 0 -chrVII 672370 675585 HC_gene_3190_tx_9 7 + 672370 675585 . 1 3216 0 -chrVII 672370 675585 HC_gene_3190_tx_10 1 + 672370 675585 . 2 960,2160 0,1056 -chrVII 672390 675585 HC_gene_3190_tx_11 1 + 672390 675585 . 3 955,785,870 0,1244,2326 -chrVII 672582 675585 HC_gene_3190_tx_12 6 + 672582 675585 . 1 3004 0 -chrVII 672727 675585 HC_gene_3190_tx_13 10 + 672727 675585 . 1 2859 0 -chrVII 672727 675585 HC_gene_3190_tx_14 1 + 672727 675585 . 2 534,2258 0,601 -chrVII 672915 675585 HC_gene_3190_tx_15 10 + 672915 675585 . 1 2671 0 -chrVII 672915 675585 HC_gene_3190_tx_16 1 + 672915 675585 . 2 89,1694 0,977 -chrVII 672915 675585 HC_gene_3190_tx_17 1 + 672915 675585 . 2 1555,1053 0,1618 -chrVII 673028 675585 HC_gene_3190_tx_18 14 + 673028 675585 . 1 2558 0 -chrVII 673158 675585 HC_gene_3190_tx_19 9 + 673158 675585 . 1 2428 0 -chrVII 673220 675585 HC_gene_3190_tx_20 3 + 673220 675585 . 1 2366 0 -chrVII 673220 675585 HC_gene_3190_tx_21 1 + 673220 675585 . 2 136,1121 0,1245 -chrVII 673332 675585 HC_gene_3190_tx_22 11 + 673332 675585 . 1 2254 0 -chrVII 673332 675585 HC_gene_3190_tx_23 1 + 673332 675585 . 2 151,1933 0,321 -chrVII 673332 675585 HC_gene_3190_tx_24 1 + 673332 675585 . 2 685,1478 0,776 -chrVII 673332 675585 HC_gene_3190_tx_25 1 + 673332 675585 . 2 1103,1053 0,1201 -chrVII 673332 675585 HC_gene_3190_tx_26 1 + 673332 675585 . 2 1103,1039 0,1215 -chrVII 673488 675585 HC_gene_3190_tx_27 17 + 673488 675585 . 1 2098 0 -chrVII 673488 675585 HC_gene_3190_tx_28 1 + 673488 675585 . 2 640,1206 0,892 -chrVII 673606 675585 HC_gene_3190_tx_29 35 + 673606 675585 . 1 1980 0 -chrVII 673606 675585 HC_gene_3190_tx_30 1 + 673606 675585 . 2 1881,45 0,1935 -chrVII 673606 675585 HC_gene_3190_tx_31 1 + 673606 675585 . 2 1167,737 0,1243 -chrVII 673606 675585 HC_gene_3190_tx_32 1 + 673606 675585 . 2 452,1121 0,859 -chrVII 673606 675585 HC_gene_3190_tx_33 1 + 673606 675585 . 2 1823,59 0,1921 -chrVII 673904 675585 HC_gene_3190_tx_34 61 + 673904 675585 . 1 1682 0 -chrVII 674178 675585 HC_gene_3190_tx_35 20 + 674178 675585 . 1 1408 0 -chrVII 674632 675585 HC_gene_3190_tx_36 47 + 674632 675585 . 1 954 0 -chrVII 675093 675585 HC_gene_3190_tx_37 75 + 675093 675585 . 1 493 0 -chrVII 675280 675585 HC_gene_3190_tx_38 109 + 675280 675585 . 1 306 0 -chrVII 675502 676391 HC_gene_3629_tx_1 26 - 675502 676391 . 1 890 0 -chrVII 675571 676391 HC_gene_3629_tx_2 105 - 675571 676391 . 1 821 0 -chrVII 675571 677035 HC_gene_3630_tx_1 1 - 675571 677035 . 1 1465 0 -chrVII 676573 677012 HC_gene_3191_tx_1 1 + 676573 677012 . 1 440 0 -chrVII 676573 677628 HC_gene_3191_tx_2 11 + 676573 677628 . 1 1056 0 -chrVII 677566 678450 MC_gene_3631_tx_1 1 - 677566 678450 . 1 885 0 -chrVII 678394 678534 HC_gene_3192_tx_1 1 + 678394 678534 . 1 141 0 -chrVII 678651 679920 HC_gene_3193_tx_1 1 + 678651 679920 . 1 1270 0 -chrVII 681464 682267 HC_gene_3194_tx_1 11 + 681464 682267 . 1 804 0 -chrVII 681464 682399 HC_gene_3194_tx_2 6 + 681464 682399 . 1 936 0 -chrVII 682397 687689 HC_gene_3632_tx_1 2 - 682397 687689 . 1 5293 0 -chrVII 687833 690046 HC_gene_3195_tx_1 1 + 687833 690046 . 1 2214 0 -chrVII 687847 690034 HC_gene_3195_tx_2 1 + 687847 690034 . 1 2188 0 -chrVII 687860 690032 HC_gene_3195_tx_3 1 + 687860 690032 . 1 2173 0 -chrVII 688548 689941 LC_gene_3633_tx_1 1 - 688548 689941 . 1 1394 0 -chrVII 690162 691721 HC_gene_3196_tx_1 1 + 690162 691721 . 2 848,632 0,928 -chrVII 691644 693131 LC_gene_3634_tx_1 1 - 691644 693131 . 1 1488 0 -chrVII 692105 693176 HC_gene_3197_tx_1 1 + 692105 693176 . 1 1072 0 -chrVII 692514 693176 HC_gene_3197_tx_2 7 + 692514 693176 . 1 663 0 -chrVII 693326 694492 HC_gene_3198_tx_1 31 + 693326 694492 . 1 1167 0 -chrVII 693326 694492 HC_gene_3198_tx_2 1 + 693326 694492 . 2 734,375 0,792 -chrVII 693326 694600 HC_gene_3198_tx_3 1 + 693326 694600 . 1 1275 0 -chrVII 694408 695048 HC_gene_3635_tx_1 32 - 694408 695048 . 1 641 0 -chrVII 694408 695160 HC_gene_3635_tx_2 115 - 694408 695160 . 1 753 0 -chrVII 694514 695048 HC_gene_3635_tx_3 4 - 694514 695048 . 1 535 0 -chrVII 694514 695160 HC_gene_3635_tx_4 16 - 694514 695160 . 1 647 0 -chrVII 695388 696196 HC_gene_3199_tx_1 1 + 695388 696196 . 1 809 0 -chrVII 695388 697401 HC_gene_3199_tx_2 119 + 695388 697401 . 1 2014 0 -chrVII 695388 697401 HC_gene_3199_tx_3 1 + 695388 697401 . 2 1352,553 0,1461 -chrVII 695388 697401 HC_gene_3199_tx_4 1 + 695388 697401 . 2 1077,819 0,1195 -chrVII 695388 697401 HC_gene_3199_tx_5 1 + 695388 697401 . 3 135,586,965 0,292,1049 -chrVII 695388 697401 HC_gene_3199_tx_6 1 + 695388 697401 . 2 1820,67 0,1947 -chrVII 695388 697401 HC_gene_3199_tx_7 1 + 695388 697401 . 2 1081,854 0,1160 -chrVII 695388 697401 HC_gene_3199_tx_8 1 + 695388 697401 . 2 709,617 0,1397 -chrVII 695388 697401 HC_gene_3199_tx_9 1 + 695388 697401 . 2 1056,854 0,1160 -chrVII 695388 697401 HC_gene_3199_tx_10 1 + 695388 697401 . 2 1056,910 0,1104 -chrVII 695388 697401 HC_gene_3199_tx_11 1 + 695388 697401 . 2 950,819 0,1195 -chrVII 695388 697401 HC_gene_3199_tx_12 1 + 695388 697401 . 2 1029,914 0,1100 -chrVII 695388 697555 HC_gene_3199_tx_13 2 + 695388 697555 . 1 2168 0 -chrVII 695579 697401 HC_gene_3199_tx_14 9 + 695579 697401 . 1 1823 0 -chrVII 695706 697401 HC_gene_3199_tx_15 2 + 695706 697401 . 1 1696 0 -chrVII 695776 697401 HC_gene_3199_tx_16 13 + 695776 697401 . 1 1626 0 -chrVII 695776 697401 HC_gene_3199_tx_17 1 + 695776 697401 . 2 968,617 0,1009 -chrVII 695776 697401 HC_gene_3199_tx_18 1 + 695776 697401 . 2 271,819 0,807 -chrVII 695939 697401 HC_gene_3199_tx_19 1 + 695939 697401 . 2 84,929 0,534 -chrVII 696012 697401 HC_gene_3199_tx_20 31 + 696012 697401 . 1 1390 0 -chrVII 696012 697401 HC_gene_3199_tx_21 1 + 696012 697401 . 2 861,353 0,1037 -chrVII 696137 697401 HC_gene_3199_tx_22 25 + 696137 697401 . 1 1265 0 -chrVII 696137 697401 HC_gene_3199_tx_23 1 + 696137 697401 . 2 307,819 0,446 -chrVII 696137 697401 HC_gene_3199_tx_24 1 + 696137 697401 . 2 393,540 0,725 -chrVII 696137 697401 HC_gene_3199_tx_25 1 + 696137 697401 . 2 1071,105 0,1160 -chrVII 696348 697401 HC_gene_3199_tx_26 6 + 696348 697401 . 1 1054 0 -chrVII 696444 697401 HC_gene_3199_tx_27 17 + 696444 697401 . 1 958 0 -chrVII 696569 697401 HC_gene_3199_tx_28 22 + 696569 697401 . 1 833 0 -chrVII 696798 697401 HC_gene_3199_tx_29 144 + 696798 697401 . 1 604 0 -chrVII 696798 697555 HC_gene_3199_tx_30 3 + 696798 697555 . 1 758 0 -chrVII 697304 698399 HC_gene_3636_tx_1 8 - 697304 698399 . 1 1096 0 -chrVII 697430 698399 HC_gene_3636_tx_2 12 - 697430 698399 . 1 970 0 -chrVII 697515 698399 HC_gene_3636_tx_3 1 - 697515 698399 . 1 885 0 -chrVII 698549 699005 HC_gene_3200_tx_1 476 + 698549 699005 . 1 457 0 -chrVII 698884 699431 HC_gene_3637_tx_1 61 - 698884 699431 . 1 548 0 -chrVII 698884 699489 HC_gene_3637_tx_2 29 - 698884 699489 . 1 606 0 -chrVII 698884 699606 HC_gene_3637_tx_3 14 - 698884 699606 . 1 723 0 -chrVII 698884 699670 HC_gene_3637_tx_4 51 - 698884 699670 . 1 787 0 -chrVII 698884 699844 HC_gene_3637_tx_5 384 - 698884 699844 . 1 961 0 -chrVII 699112 700000 MC_gene_3201_tx_1 1 + 699112 700000 . 1 889 0 -chrVII 700097 700496 HC_gene_3202_tx_1 2 + 700097 700496 . 1 400 0 -chrVII 701147 701768 MC_gene_3638_tx_1 1 - 701147 701768 . 1 622 0 -chrVII 701178 701317 MC_gene_3203_tx_1 1 + 701178 701317 . 1 140 0 -chrVII 701210 701820 MC_gene_3638_tx_2 1 - 701210 701820 . 2 308,203 0,408 -chrVII 701256 701885 MC_gene_3204_tx_1 1 + 701256 701885 . 1 630 0 -chrVII 701755 702552 MC_gene_3205_tx_1 1 + 701755 702552 . 1 798 0 -chrVII 702126 703378 MC_gene_3206_tx_1 1 + 702126 703378 . 1 1253 0 -chrVII 702268 702707 MC_gene_3639_tx_1 1 - 702268 702707 . 1 440 0 -chrVII 703427 704460 HC_gene_3207_tx_1 2 + 703427 704460 . 1 1034 0 -chrVII 703427 705208 HC_gene_3207_tx_2 34 + 703427 705208 . 1 1782 0 -chrVII 703427 705208 HC_gene_3207_tx_3 1 + 703427 705208 . 2 901,797 0,985 -chrVII 703427 705208 HC_gene_3207_tx_4 1 + 703427 705208 . 2 764,953 0,829 -chrVII 703427 705208 HC_gene_3207_tx_5 1 + 703427 705208 . 2 1037,662 0,1120 -chrVII 703427 705208 HC_gene_3207_tx_6 1 + 703427 705208 . 2 955,772 0,1010 -chrVII 703427 705208 HC_gene_3207_tx_7 1 + 703427 705208 . 2 519,1185 0,597 -chrVII 703695 704460 HC_gene_3207_tx_10 1 + 703695 704460 . 1 766 0 -chrVII 703695 705208 HC_gene_3207_tx_8 7 + 703695 705208 . 1 1514 0 -chrVII 703908 705208 HC_gene_3207_tx_9 4 + 703908 705208 . 1 1301 0 -chrVII 705244 706581 HC_gene_3640_tx_1 4 - 705244 706581 . 1 1338 0 -chrVII 711948 712454 LC_gene_3208_tx_1 1 + 711948 712454 . 1 507 0 -chrVII 713278 713485 HC_gene_3641_tx_1 1 - 713278 713485 . 1 208 0 -chrVII 713553 715013 MC_gene_3642_tx_1 1 - 713553 715013 . 1 1461 0 -chrVII 713657 715148 HC_gene_3209_tx_1 2 + 713657 715148 . 1 1492 0 -chrVII 715042 715599 HC_gene_3643_tx_1 1 - 715042 715599 . 1 558 0 -chrVII 715214 715599 HC_gene_3643_tx_2 3 - 715214 715599 . 1 386 0 -chrVII 715486 717159 HC_gene_3210_tx_1 1 + 715486 717159 . 2 1506,89 0,1585 -chrVII 715486 717159 HC_gene_3210_tx_2 2 + 715486 717159 . 1 1674 0 -chrVII 715562 715858 HC_gene_3210_tx_8 1 + 715562 715858 . 1 297 0 -chrVII 715795 717159 HC_gene_3210_tx_3 33 + 715795 717159 . 1 1365 0 -chrVII 715795 717159 HC_gene_3210_tx_4 1 + 715795 717159 . 2 65,1154 0,211 -chrVII 715795 717159 HC_gene_3210_tx_5 1 + 715795 717159 . 2 788,504 0,861 -chrVII 715795 717159 HC_gene_3210_tx_6 1 + 715795 717159 . 2 280,1024 0,341 -chrVII 715795 717159 HC_gene_3210_tx_7 1 + 715795 717159 . 2 203,1107 0,258 -chrVII 716204 717159 HC_gene_3210_tx_9 4 + 716204 717159 . 1 956 0 -chrVII 716491 717159 HC_gene_3210_tx_10 7 + 716491 717159 . 1 669 0 -chrVII 716560 717159 HC_gene_3210_tx_11 3 + 716560 717159 . 1 600 0 -chrVII 717294 718711 HC_gene_3211_tx_1 7 + 717294 718711 . 1 1418 0 -chrVII 718018 718711 HC_gene_3211_tx_2 2 + 718018 718711 . 1 694 0 -chrVII 718490 719131 MC_gene_3644_tx_1 1 - 718490 719131 . 1 642 0 -chrVII 718843 720143 HC_gene_3212_tx_1 15 + 718843 720143 . 1 1301 0 -chrVII 718843 720143 HC_gene_3212_tx_2 1 + 718843 720143 . 2 682,523 0,778 -chrVII 718843 720235 HC_gene_3212_tx_3 17 + 718843 720235 . 1 1393 0 -chrVII 719224 720143 HC_gene_3212_tx_4 2 + 719224 720143 . 1 920 0 -chrVII 719224 720143 HC_gene_3212_tx_5 1 + 719224 720143 . 2 147,691 0,229 -chrVII 719224 720235 HC_gene_3212_tx_6 1 + 719224 720235 . 1 1012 0 -chrVII 719597 720134 MC_gene_3645_tx_1 1 - 719597 720134 . 1 538 0 -chrVII 720357 721849 HC_gene_3213_tx_1 5 + 720357 721849 . 1 1493 0 -chrVII 720725 721849 HC_gene_3213_tx_2 1 + 720725 721849 . 1 1125 0 -chrVII 721181 721849 HC_gene_3213_tx_3 1 + 721181 721849 . 1 669 0 -chrVII 722119 724868 HC_gene_3214_tx_1 1 + 722119 724868 . 1 2750 0 -chrVII 722960 724868 HC_gene_3214_tx_2 7 + 722960 724868 . 1 1909 0 -chrVII 723392 724868 HC_gene_3214_tx_3 9 + 723392 724868 . 1 1477 0 -chrVII 723811 724868 HC_gene_3214_tx_4 7 + 723811 724868 . 1 1058 0 -chrVII 723915 724868 HC_gene_3214_tx_5 17 + 723915 724868 . 1 954 0 -chrVII 724834 726489 HC_gene_3646_tx_1 20 - 724834 726489 . 1 1656 0 -chrVII 724834 726489 HC_gene_3646_tx_2 1 - 724834 726489 . 2 648,869 0,787 -chrVII 725866 726488 LC_gene_3215_tx_1 1 + 725866 726488 . 1 623 0 -chrVII 725977 726489 HC_gene_3646_tx_3 1 - 725977 726489 . 1 513 0 -chrVII 726059 726489 HC_gene_3646_tx_4 3 - 726059 726489 . 1 431 0 -chrVII 726514 727896 LC_gene_3647_tx_1 1 - 726514 727896 . 1 1383 0 -chrVII 726950 727904 HC_gene_3216_tx_1 3654 + 726950 727904 . 2 89,547 0,408 -chrVII 726950 727904 HC_gene_3216_tx_2 74 + 726950 727904 . 1 955 0 -chrVII 726950 727904 HC_gene_3216_tx_3 28 + 726950 727904 . 2 98,525 0,430 -chrVII 727444 727904 HC_gene_3216_tx_4 1560 + 727444 727904 . 1 461 0 -chrVII 727931 728603 HC_gene_3648_tx_1 14 - 727931 728603 . 1 673 0 -chrVII 727931 729018 HC_gene_3648_tx_2 14 - 727931 729018 . 1 1088 0 -chrVII 727931 729232 HC_gene_3648_tx_3 10 - 727931 729232 . 1 1302 0 -chrVII 727931 729445 HC_gene_3648_tx_4 6 - 727931 729445 . 1 1515 0 -chrVII 727931 729761 HC_gene_3648_tx_5 59 - 727931 729761 . 1 1831 0 -chrVII 727931 729761 HC_gene_3648_tx_6 1 - 727931 729761 . 2 1313,469 0,1362 -chrVII 727931 729761 HC_gene_3648_tx_7 1 - 727931 729761 . 2 285,735 0,1096 -chrVII 727931 729761 HC_gene_3648_tx_8 1 - 727931 729761 . 2 1523,244 0,1587 -chrVII 729837 730855 HC_gene_3649_tx_1 37 - 729837 730855 . 1 1019 0 -chrVII 729965 730566 HC_gene_3217_tx_1 3 + 729965 730566 . 1 602 0 -chrVII 729965 730631 HC_gene_3217_tx_2 1 + 729965 730631 . 1 667 0 -chrVII 730771 731034 MC_gene_3218_tx_1 1 + 730771 731034 . 1 264 0 -chrVII 731308 732983 HC_gene_3650_tx_1 6 - 731308 732983 . 1 1676 0 -chrVII 731336 733106 HC_gene_3219_tx_1 2 + 731336 733106 . 1 1771 0 -chrVII 731336 733169 HC_gene_3219_tx_2 1 + 731336 733169 . 1 1834 0 -chrVII 732943 733256 HC_gene_3651_tx_1 1 - 732943 733256 . 1 314 0 -chrVII 732972 733181 HC_gene_3651_tx_2 1 - 732972 733181 . 1 210 0 -chrVII 733638 735443 HC_gene_3220_tx_1 1 + 733638 735443 . 1 1806 0 -chrVII 733791 735283 HC_gene_3220_tx_2 2 + 733791 735283 . 1 1493 0 -chrVII 733791 735370 HC_gene_3220_tx_3 5 + 733791 735370 . 1 1580 0 -chrVII 733791 735443 HC_gene_3220_tx_4 20 + 733791 735443 . 1 1653 0 -chrVII 734118 735443 HC_gene_3220_tx_5 1 + 734118 735443 . 1 1326 0 -chrVII 734305 735370 HC_gene_3220_tx_6 1 + 734305 735370 . 1 1066 0 -chrVII 734305 735443 HC_gene_3220_tx_7 1 + 734305 735443 . 1 1139 0 -chrVII 734305 735443 HC_gene_3220_tx_8 1 + 734305 735443 . 2 155,607 0,532 -chrVII 734596 735845 MC_gene_3652_tx_1 1 - 734596 735845 . 1 1250 0 -chrVII 735145 735818 MC_gene_3652_tx_2 1 - 735145 735818 . 1 674 0 -chrVII 736346 736478 MC_gene_3221_tx_1 1 + 736346 736478 . 1 133 0 -chrVII 736349 736589 MC_gene_3222_tx_1 1 + 736349 736589 . 1 241 0 -chrVII 736513 738230 HC_gene_3653_tx_1 34 - 736513 738230 . 1 1718 0 -chrVII 736513 738230 HC_gene_3653_tx_2 1 - 736513 738230 . 2 1582,87 0,1631 -chrVII 736513 738230 HC_gene_3653_tx_3 1 - 736513 738230 . 2 768,769 0,949 -chrVII 736605 737124 LC_gene_3223_tx_1 1 + 736605 737124 . 1 520 0 -chrVII 738469 738957 HC_gene_3224_tx_1 17 + 738469 738957 . 1 489 0 -chrVII 738535 738977 MC_gene_3654_tx_1 1 - 738535 738977 . 1 443 0 -chrVII 739340 739668 LC_gene_3655_tx_1 1 - 739340 739668 . 1 329 0 -chrVII 739416 741875 HC_gene_3225_tx_1 3 + 739416 741875 . 1 2460 0 -chrVII 739914 741875 HC_gene_3225_tx_2 285 + 739914 741875 . 1 1962 0 -chrVII 739914 741875 HC_gene_3225_tx_3 1 + 739914 741875 . 2 1519,395 0,1567 -chrVII 739914 741875 HC_gene_3225_tx_4 1 + 739914 741875 . 2 541,1270 0,692 -chrVII 739914 741875 HC_gene_3225_tx_5 1 + 739914 741875 . 2 364,1548 0,414 -chrVII 739914 741875 HC_gene_3225_tx_6 1 + 739914 741875 . 2 202,1645 0,317 -chrVII 739914 741875 HC_gene_3225_tx_7 1 + 739914 741875 . 2 1434,354 0,1608 -chrVII 739914 741875 HC_gene_3225_tx_8 1 + 739914 741875 . 2 142,1121 0,841 -chrVII 739914 741875 HC_gene_3225_tx_9 1 + 739914 741875 . 2 522,1205 0,757 -chrVII 740143 741875 HC_gene_3225_tx_10 35 + 740143 741875 . 1 1733 0 -chrVII 740143 741875 HC_gene_3225_tx_11 1 + 740143 741875 . 2 264,1121 0,612 -chrVII 740295 741875 HC_gene_3225_tx_12 20 + 740295 741875 . 1 1581 0 -chrVII 740384 741875 HC_gene_3225_tx_13 39 + 740384 741875 . 1 1492 0 -chrVII 740499 741875 HC_gene_3225_tx_14 31 + 740499 741875 . 1 1377 0 -chrVII 740622 741875 HC_gene_3225_tx_15 30 + 740622 741875 . 1 1254 0 -chrVII 740910 741274 HC_gene_3225_tx_16 1 + 740910 741274 . 1 365 0 -chrVII 740910 741875 HC_gene_3225_tx_17 45 + 740910 741875 . 1 966 0 -chrVII 741066 741875 HC_gene_3225_tx_18 39 + 741066 741875 . 1 810 0 -chrVII 741187 741875 HC_gene_3225_tx_19 58 + 741187 741875 . 1 689 0 -chrVII 741484 741875 HC_gene_3225_tx_20 50 + 741484 741875 . 1 392 0 -chrVII 741688 742079 HC_gene_3656_tx_1 28 - 741688 742079 . 1 392 0 -chrVII 741845 742079 HC_gene_3656_tx_2 2 - 741845 742079 . 1 235 0 -chrVII 742254 745587 HC_gene_3226_tx_1 4 + 742254 745587 . 1 3334 0 -chrVII 742254 745587 HC_gene_3226_tx_2 1 + 742254 745587 . 2 293,2442 0,892 -chrVII 744579 745587 HC_gene_3226_tx_3 6 + 744579 745587 . 1 1009 0 -chrVII 745314 745677 LC_gene_3657_tx_1 1 - 745314 745677 . 1 364 0 -chrVII 745320 745587 HC_gene_3226_tx_4 11 + 745320 745587 . 1 268 0 -chrVII 745721 747764 HC_gene_3227_tx_1 1 + 745721 747764 . 1 2044 0 -chrVII 745721 747954 HC_gene_3227_tx_2 6 + 745721 747954 . 1 2234 0 -chrVII 746788 747687 HC_gene_3227_tx_3 1 + 746788 747687 . 1 900 0 -chrVII 746788 747764 HC_gene_3227_tx_4 2 + 746788 747764 . 1 977 0 -chrVII 746788 747954 HC_gene_3227_tx_5 7 + 746788 747954 . 1 1167 0 -chrVII 747731 750130 HC_gene_3658_tx_1 1 - 747731 750130 . 2 926,1428 0,972 -chrVII 747873 748747 HC_gene_3658_tx_4 6 - 747873 748747 . 1 875 0 -chrVII 747873 750130 HC_gene_3658_tx_2 31 - 747873 750130 . 1 2258 0 -chrVII 747873 750130 HC_gene_3658_tx_3 1 - 747873 750130 . 2 2004,154 0,2104 -chrVII 750364 751098 HC_gene_3228_tx_1 1 + 750364 751098 . 1 735 0 -chrVII 750364 751100 HC_gene_3228_tx_2 5 + 750364 751100 . 1 737 0 -chrVII 750364 751101 HC_gene_3228_tx_3 1 + 750364 751101 . 1 738 0 -chrVII 750364 751103 HC_gene_3228_tx_4 1 + 750364 751103 . 1 740 0 -chrVII 750364 751105 HC_gene_3228_tx_5 1 + 750364 751105 . 1 742 0 -chrVII 750364 751106 HC_gene_3228_tx_6 1 + 750364 751106 . 1 743 0 -chrVII 750364 751328 HC_gene_3228_tx_7 28 + 750364 751328 . 1 965 0 -chrVII 750364 751328 HC_gene_3228_tx_8 1 + 750364 751328 . 2 87,840 0,125 -chrVII 750364 751328 HC_gene_3228_tx_9 1 + 750364 751328 . 2 118,763 0,202 -chrVII 750364 751809 HC_gene_3228_tx_10 3 + 750364 751809 . 1 1446 0 -chrVII 750636 751096 HC_gene_3228_tx_11 1 + 750636 751096 . 1 461 0 -chrVII 750636 751098 HC_gene_3228_tx_12 1 + 750636 751098 . 1 463 0 -chrVII 750636 751101 HC_gene_3228_tx_13 1 + 750636 751101 . 1 466 0 -chrVII 750636 751328 HC_gene_3228_tx_14 3 + 750636 751328 . 1 693 0 -chrVII 750846 751328 HC_gene_3228_tx_15 7 + 750846 751328 . 1 483 0 -chrVII 750846 751809 HC_gene_3228_tx_16 1 + 750846 751809 . 1 964 0 -chrVII 750846 752529 HC_gene_3228_tx_17 1 + 750846 752529 . 2 889,690 0,994 -chrVII 751218 751628 HC_gene_3659_tx_1 12 - 751218 751628 . 1 411 0 -chrVII 751218 751760 HC_gene_3659_tx_2 10 - 751218 751760 . 1 543 0 -chrVII 751218 752062 HC_gene_3659_tx_3 10 - 751218 752062 . 1 845 0 -chrVII 751218 752062 HC_gene_3659_tx_4 1 - 751218 752062 . 2 517,135 0,710 -chrVII 751218 752062 HC_gene_3659_tx_5 1 - 751218 752062 . 2 498,297 0,548 -chrVII 751218 752269 HC_gene_3659_tx_6 6 - 751218 752269 . 1 1052 0 -chrVII 751218 752518 HC_gene_3659_tx_7 12 - 751218 752518 . 1 1301 0 -chrVII 751218 752647 HC_gene_3659_tx_8 5 - 751218 752647 . 1 1430 0 -chrVII 751218 753031 HC_gene_3659_tx_9 1 - 751218 753031 . 2 754,1002 0,812 -chrVII 751218 753031 HC_gene_3659_tx_10 3 - 751218 753031 . 1 1814 0 -chrVII 751218 753563 HC_gene_3659_tx_11 4 - 751218 753563 . 1 2346 0 -chrVII 751218 753890 HC_gene_3659_tx_12 14 - 751218 753890 . 1 2673 0 -chrVII 751218 753890 HC_gene_3659_tx_13 1 - 751218 753890 . 2 1170,1445 0,1228 -chrVII 751218 753890 HC_gene_3659_tx_14 1 - 751218 753890 . 2 947,1662 0,1011 -chrVII 754209 755354 HC_gene_3229_tx_1 1 + 754209 755354 . 1 1146 0 -chrVII 754651 755354 HC_gene_3229_tx_2 20 + 754651 755354 . 1 704 0 -chrVII 755056 755354 HC_gene_3229_tx_3 4 + 755056 755354 . 1 299 0 -chrVII 755329 755804 HC_gene_3660_tx_1 24 - 755329 755804 . 1 476 0 -chrVII 755329 756071 HC_gene_3660_tx_2 20 - 755329 756071 . 1 743 0 -chrVII 755329 756295 HC_gene_3660_tx_4 12 - 755329 756295 . 1 967 0 -chrVII 755329 756493 HC_gene_3660_tx_5 136 - 755329 756493 . 1 1165 0 -chrVII 755473 755804 HC_gene_3660_tx_8 6 - 755473 755804 . 1 332 0 -chrVII 755473 756071 HC_gene_3660_tx_3 7 - 755473 756071 . 1 599 0 -chrVII 755473 756295 HC_gene_3660_tx_6 10 - 755473 756295 . 1 823 0 -chrVII 755473 756493 HC_gene_3660_tx_7 82 - 755473 756493 . 1 1021 0 -chrVII 756722 757395 HC_gene_3661_tx_1 5 - 756722 757395 . 1 674 0 -chrVII 756925 757642 HC_gene_3230_tx_1 2 + 756925 757642 . 1 718 0 -chrVII 756925 757647 HC_gene_3230_tx_2 1 + 756925 757647 . 1 723 0 -chrVII 756925 757649 HC_gene_3230_tx_3 1 + 756925 757649 . 1 725 0 -chrVII 756925 757650 HC_gene_3230_tx_4 2 + 756925 757650 . 1 726 0 -chrVII 756925 757651 HC_gene_3230_tx_5 2 + 756925 757651 . 1 727 0 -chrVII 756925 757652 HC_gene_3230_tx_6 2 + 756925 757652 . 1 728 0 -chrVII 756925 757653 HC_gene_3230_tx_7 1 + 756925 757653 . 1 729 0 -chrVII 756925 757727 HC_gene_3230_tx_8 2 + 756925 757727 . 1 803 0 -chrVII 756943 757634 HC_gene_3230_tx_9 1 + 756943 757634 . 1 692 0 -chrVII 756948 757635 HC_gene_3230_tx_10 1 + 756948 757635 . 1 688 0 -chrVII 757029 757646 HC_gene_3230_tx_11 1 + 757029 757646 . 1 618 0 -chrVII 757617 761216 HC_gene_3231_tx_1 1 + 757617 761216 . 1 3600 0 -chrVII 757617 761307 HC_gene_3231_tx_2 2 + 757617 761307 . 1 3691 0 -chrVII 757786 761216 HC_gene_3231_tx_3 1 + 757786 761216 . 1 3431 0 -chrVII 759483 760282 LC_gene_3662_tx_1 1 - 759483 760282 . 1 800 0 -chrVII 760997 762038 LC_gene_3663_tx_1 1 - 760997 762038 . 1 1042 0 -chrVII 761338 762307 HC_gene_3232_tx_1 258 + 761338 762307 . 1 970 0 -chrVII 761338 762307 HC_gene_3232_tx_2 1 + 761338 762307 . 2 108,747 0,223 -chrVII 761338 762307 HC_gene_3232_tx_3 1 + 761338 762307 . 2 97,752 0,218 -chrVII 761338 762527 HC_gene_3232_tx_4 3 + 761338 762527 . 1 1190 0 -chrVII 761338 763406 HC_gene_3232_tx_7 2 + 761338 763406 . 1 2069 0 -chrVII 761502 762307 HC_gene_3232_tx_5 40 + 761502 762307 . 1 806 0 -chrVII 761502 762527 HC_gene_3232_tx_6 1 + 761502 762527 . 1 1026 0 -chrVII 761733 762307 HC_gene_3232_tx_9 33 + 761733 762307 . 1 575 0 -chrVII 761733 763406 HC_gene_3232_tx_8 1 + 761733 763406 . 1 1674 0 -chrVII 761870 762307 HC_gene_3232_tx_10 63 + 761870 762307 . 1 438 0 -chrVII 762049 762307 HC_gene_3232_tx_11 40 + 762049 762307 . 1 259 0 -chrVII 762410 763406 HC_gene_3232_tx_12 140 + 762410 763406 . 1 997 0 -chrVII 762410 763406 HC_gene_3232_tx_13 1 + 762410 763406 . 2 439,513 0,484 -chrVII 762410 763406 HC_gene_3232_tx_14 1 + 762410 763406 . 2 563,396 0,601 -chrVII 762410 763406 HC_gene_3232_tx_15 1 + 762410 763406 . 2 475,474 0,523 -chrVII 762410 763406 HC_gene_3232_tx_16 1 + 762410 763406 . 2 556,387 0,610 -chrVII 762410 763642 HC_gene_3232_tx_17 12 + 762410 763642 . 1 1233 0 -chrVII 762410 763743 HC_gene_3232_tx_18 2 + 762410 763743 . 1 1334 0 -chrVII 762416 763743 HC_gene_3232_tx_19 1 + 762416 763743 . 1 1328 0 -chrVII 762417 763743 HC_gene_3232_tx_20 1 + 762417 763743 . 1 1327 0 -chrVII 762422 763743 HC_gene_3232_tx_21 1 + 762422 763743 . 1 1322 0 -chrVII 762608 763642 HC_gene_3232_tx_22 1 + 762608 763642 . 1 1035 0 -chrVII 762628 763743 HC_gene_3232_tx_23 1 + 762628 763743 . 1 1116 0 -chrVII 762660 763743 HC_gene_3232_tx_24 1 + 762660 763743 . 1 1084 0 -chrVII 762703 763743 HC_gene_3232_tx_25 1 + 762703 763743 . 1 1041 0 -chrVII 762707 763406 HC_gene_3232_tx_32 61 + 762707 763406 . 1 700 0 -chrVII 762707 763406 HC_gene_3232_tx_33 1 + 762707 763406 . 2 100,513 0,187 -chrVII 762707 763642 HC_gene_3232_tx_26 6 + 762707 763642 . 1 936 0 -chrVII 762880 763642 HC_gene_3232_tx_27 1 + 762880 763642 . 1 763 0 -chrVII 762894 763743 HC_gene_3232_tx_28 1 + 762894 763743 . 1 850 0 -chrVII 762917 763743 HC_gene_3232_tx_29 1 + 762917 763743 . 1 827 0 -chrVII 762940 763406 HC_gene_3232_tx_34 58 + 762940 763406 . 1 467 0 -chrVII 762940 763642 HC_gene_3232_tx_30 4 + 762940 763642 . 1 703 0 -chrVII 762940 763743 HC_gene_3232_tx_31 1 + 762940 763743 . 1 804 0 -chrVII 763305 765887 HC_gene_3664_tx_1 1 - 763305 765887 . 1 2583 0 -chrVII 763616 764446 HC_gene_3664_tx_9 14 - 763616 764446 . 1 831 0 -chrVII 763616 765542 HC_gene_3664_tx_2 6 - 763616 765542 . 1 1927 0 -chrVII 763616 765630 HC_gene_3664_tx_3 1 - 763616 765630 . 2 982,904 0,1111 -chrVII 763616 765630 HC_gene_3664_tx_4 1 - 763616 765630 . 1 2015 0 -chrVII 763616 765733 HC_gene_3664_tx_5 10 - 763616 765733 . 1 2118 0 -chrVII 763616 765887 HC_gene_3664_tx_6 53 - 763616 765887 . 1 2272 0 -chrVII 763616 765887 HC_gene_3664_tx_7 1 - 763616 765887 . 2 1062,149 0,2123 -chrVII 763616 765964 HC_gene_3664_tx_8 1 - 763616 765964 . 2 336,839 0,1510 -chrVII 765011 765877 MC_gene_3233_tx_1 1 + 765011 765877 . 1 867 0 -chrVII 765965 767166 LC_gene_3665_tx_1 1 - 765965 767166 . 1 1202 0 -chrVII 767016 767276 LC_gene_3234_tx_1 1 + 767016 767276 . 1 261 0 -chrVII 767483 770375 HC_gene_3235_tx_1 5 + 767483 770375 . 1 2893 0 -chrVII 770524 772068 HC_gene_3236_tx_1 10 + 770524 772068 . 1 1545 0 -chrVII 770524 772352 HC_gene_3236_tx_2 3 + 770524 772352 . 1 1829 0 -chrVII 770524 772446 HC_gene_3236_tx_3 2 + 770524 772446 . 1 1923 0 -chrVII 770524 772446 HC_gene_3236_tx_4 1 + 770524 772446 . 2 1019,854 0,1069 -chrVII 770524 773784 HC_gene_3236_tx_5 2 + 770524 773784 . 1 3261 0 -chrVII 770932 772068 HC_gene_3236_tx_6 2 + 770932 772068 . 1 1137 0 -chrVII 770932 772352 HC_gene_3236_tx_7 2 + 770932 772352 . 1 1421 0 -chrVII 770932 772446 HC_gene_3236_tx_8 1 + 770932 772446 . 1 1515 0 -chrVII 771385 772048 MC_gene_3666_tx_1 1 - 771385 772048 . 1 664 0 -chrVII 772399 773784 HC_gene_3236_tx_9 14 + 772399 773784 . 1 1386 0 -chrVII 772574 773784 HC_gene_3236_tx_10 3 + 772574 773784 . 1 1211 0 -chrVII 772692 773784 HC_gene_3236_tx_11 1 + 772692 773784 . 1 1093 0 -chrVII 772935 773784 HC_gene_3236_tx_12 1 + 772935 773784 . 1 850 0 -chrVII 773202 773784 HC_gene_3236_tx_13 14 + 773202 773784 . 1 583 0 -chrVII 774399 774762 MC_gene_3667_tx_1 1 - 774399 774762 . 1 364 0 -chrVII 774787 775211 HC_gene_3237_tx_1 2 + 774787 775211 . 1 425 0 -chrVII 775415 777916 HC_gene_3238_tx_1 4 + 775415 777916 . 1 2502 0 -chrVII 775538 777916 HC_gene_3238_tx_2 1 + 775538 777916 . 1 2379 0 -chrVII 775919 777916 HC_gene_3238_tx_3 2 + 775919 777916 . 1 1998 0 -chrVII 776068 777916 HC_gene_3238_tx_4 5 + 776068 777916 . 1 1849 0 -chrVII 777555 777916 HC_gene_3238_tx_5 8 + 777555 777916 . 1 362 0 -chrVII 777703 778035 MC_gene_3668_tx_1 1 - 777703 778035 . 1 333 0 -chrVII 778095 778694 LC_gene_3669_tx_1 1 - 778095 778694 . 1 600 0 -chrVII 778276 779246 HC_gene_3239_tx_1 3 + 778276 779246 . 2 691,142 0,829 -chrVII 778276 779246 HC_gene_3239_tx_2 7 + 778276 779246 . 2 703,122 0,849 -chrVII 778905 779494 LC_gene_3670_tx_1 1 - 778905 779494 . 2 74,370 0,220 -chrVII 780178 781462 HC_gene_3240_tx_1 2 + 780178 781462 . 1 1285 0 -chrVII 780236 781413 LC_gene_3671_tx_1 1 - 780236 781413 . 1 1178 0 -chrVII 780321 781462 HC_gene_3240_tx_2 1 + 780321 781462 . 1 1142 0 -chrVII 780803 781462 HC_gene_3240_tx_3 3 + 780803 781462 . 1 660 0 -chrVII 781712 783990 HC_gene_3241_tx_1 34 + 781712 783990 . 1 2279 0 -chrVII 781712 783990 HC_gene_3241_tx_2 1 + 781712 783990 . 3 1382,389,379 0,1445,1900 -chrVII 781712 783990 HC_gene_3241_tx_3 1 + 781712 783990 . 2 641,1563 0,716 -chrVII 781712 783990 HC_gene_3241_tx_4 1 + 781712 783990 . 2 706,1477 0,802 -chrVII 782276 783990 HC_gene_3241_tx_5 3 + 782276 783990 . 1 1715 0 -chrVII 782485 783990 HC_gene_3241_tx_6 7 + 782485 783990 . 1 1506 0 -chrVII 782485 783990 HC_gene_3241_tx_7 1 + 782485 783990 . 2 710,699 0,807 -chrVII 782685 783990 HC_gene_3241_tx_8 7 + 782685 783990 . 1 1306 0 -chrVII 783229 783990 HC_gene_3241_tx_9 3 + 783229 783990 . 1 762 0 -chrVII 783388 783990 HC_gene_3241_tx_10 20 + 783388 783990 . 1 603 0 -chrVII 783650 783990 HC_gene_3241_tx_11 13 + 783650 783990 . 1 341 0 -chrVII 783859 785156 HC_gene_3672_tx_1 14 - 783859 785156 . 1 1298 0 -chrVII 784065 785156 HC_gene_3672_tx_2 88 - 784065 785156 . 1 1092 0 -chrVII 784065 785156 HC_gene_3672_tx_3 1 - 784065 785156 . 2 468,566 0,526 -chrVII 784065 785156 HC_gene_3672_tx_4 1 - 784065 785156 . 2 525,484 0,608 -chrVII 784065 785365 HC_gene_3672_tx_5 1 - 784065 785365 . 1 1301 0 -chrVII 784205 785117 HC_gene_3242_tx_1 2 + 784205 785117 . 1 913 0 -chrVII 785105 785365 HC_gene_3672_tx_6 2 - 785105 785365 . 1 261 0 -chrVII 785301 786056 HC_gene_3243_tx_1 4 + 785301 786056 . 1 756 0 -chrVII 785691 786984 HC_gene_3673_tx_1 1 - 785691 786984 . 1 1294 0 -chrVII 785946 786759 HC_gene_3673_tx_3 9 - 785946 786759 . 1 814 0 -chrVII 785946 786984 HC_gene_3673_tx_2 69 - 785946 786984 . 1 1039 0 -chrVII 787226 787749 HC_gene_3674_tx_1 2275 - 787226 787749 . 1 524 0 -chrVII 787226 788201 HC_gene_3674_tx_2 87 - 787226 788201 . 1 976 0 -chrVII 787226 788201 HC_gene_3674_tx_3 30 - 787226 788201 . 2 561,23 0,953 -chrVII 787226 788750 HC_gene_3674_tx_4 4 - 787226 788750 . 2 561,572 0,953 -chrVII 787226 788750 HC_gene_3674_tx_5 3 - 787226 788750 . 1 1525 0 -chrVII 787760 788201 HC_gene_3674_tx_6 3 - 787760 788201 . 1 442 0 -chrVII 788648 788956 HC_gene_3244_tx_1 19 + 788648 788956 . 1 309 0 -chrVII 788648 790479 HC_gene_3244_tx_4 2 + 788648 790479 . 1 1832 0 -chrVII 788670 788956 HC_gene_3244_tx_2 1 + 788670 788956 . 1 287 0 -chrVII 788674 788956 HC_gene_3244_tx_3 1 + 788674 788956 . 1 283 0 -chrVII 788977 790479 HC_gene_3244_tx_5 32 + 788977 790479 . 1 1503 0 -chrVII 788977 790479 HC_gene_3244_tx_6 1 + 788977 790479 . 2 720,601 0,902 -chrVII 789909 790479 HC_gene_3244_tx_7 1 + 789909 790479 . 1 571 0 -chrVII 790123 790479 HC_gene_3244_tx_8 5 + 790123 790479 . 1 357 0 -chrVII 790326 790761 HC_gene_3675_tx_1 10 - 790326 790761 . 1 436 0 -chrVII 790326 793094 HC_gene_3675_tx_2 15 - 790326 793094 . 1 2769 0 -chrVII 791543 793094 HC_gene_3675_tx_3 1 - 791543 793094 . 1 1552 0 -chrVII 791590 793094 HC_gene_3675_tx_4 1 - 791590 793094 . 1 1505 0 -chrVII 793293 794355 MC_gene_3245_tx_1 1 + 793293 794355 . 1 1063 0 -chrVII 794582 795263 HC_gene_3676_tx_1 6 - 794582 795263 . 1 682 0 -chrVII 794582 795654 HC_gene_3676_tx_2 80 - 794582 795654 . 1 1073 0 -chrVII 794582 795654 HC_gene_3676_tx_3 1 - 794582 795654 . 2 427,568 0,505 -chrVII 795873 796864 HC_gene_3246_tx_1 1 + 795873 796864 . 1 992 0 -chrVII 796086 796864 HC_gene_3246_tx_2 9 + 796086 796864 . 1 779 0 -chrVII 796408 796864 HC_gene_3246_tx_3 5 + 796408 796864 . 1 457 0 -chrVII 796554 797590 HC_gene_3677_tx_1 2 - 796554 797590 . 1 1037 0 -chrVII 796554 797939 HC_gene_3677_tx_2 3 - 796554 797939 . 1 1386 0 -chrVII 796554 798196 HC_gene_3677_tx_3 2 - 796554 798196 . 1 1643 0 -chrVII 798501 800199 HC_gene_3247_tx_1 1 + 798501 800199 . 2 1123,413 0,1286 -chrVII 798506 799885 HC_gene_3247_tx_2 4 + 798506 799885 . 1 1380 0 -chrVII 798506 800199 HC_gene_3247_tx_3 693 + 798506 800199 . 1 1694 0 -chrVII 798506 800199 HC_gene_3247_tx_4 1 + 798506 800199 . 2 1005,595 0,1099 -chrVII 798506 800199 HC_gene_3247_tx_5 1 + 798506 800199 . 2 911,715 0,979 -chrVII 798506 800199 HC_gene_3247_tx_6 1 + 798506 800199 . 2 848,757 0,937 -chrVII 798506 800199 HC_gene_3247_tx_7 1 + 798506 800199 . 2 839,773 0,921 -chrVII 798506 800199 HC_gene_3247_tx_8 1 + 798506 800199 . 2 861,757 0,937 -chrVII 798506 800199 HC_gene_3247_tx_9 1 + 798506 800199 . 2 1241,390 0,1304 -chrVII 798506 800199 HC_gene_3247_tx_10 1 + 798506 800199 . 2 507,370 0,1324 -chrVII 798506 800199 HC_gene_3247_tx_11 1 + 798506 800199 . 2 848,773 0,921 -chrVII 798506 800199 HC_gene_3247_tx_12 1 + 798506 800199 . 2 437,1092 0,602 -chrVII 798506 800199 HC_gene_3247_tx_13 1 + 798506 800199 . 2 856,685 0,1009 -chrVII 798506 800199 HC_gene_3247_tx_14 1 + 798506 800199 . 2 875,738 0,956 -chrVII 798506 800199 HC_gene_3247_tx_15 1 + 798506 800199 . 2 101,1361 0,333 -chrVII 798506 800199 HC_gene_3247_tx_16 1 + 798506 800199 . 2 1076,564 0,1130 -chrVII 798506 800199 HC_gene_3247_tx_17 1 + 798506 800199 . 2 845,773 0,921 -chrVII 798506 800199 HC_gene_3247_tx_18 1 + 798506 800199 . 2 888,745 0,949 -chrVII 798506 800199 HC_gene_3247_tx_19 1 + 798506 800199 . 2 931,675 0,1019 -chrVII 798506 800199 HC_gene_3247_tx_20 1 + 798506 800199 . 2 770,797 0,897 -chrVII 798506 800199 HC_gene_3247_tx_21 1 + 798506 800199 . 2 875,745 0,949 -chrVII 798506 800199 HC_gene_3247_tx_22 1 + 798506 800199 . 2 688,930 0,764 -chrVII 798506 800199 HC_gene_3247_tx_23 1 + 798506 800199 . 2 1061,577 0,1117 -chrVII 798506 800199 HC_gene_3247_tx_24 1 + 798506 800199 . 2 707,930 0,764 -chrVII 798584 799885 HC_gene_3247_tx_25 1 + 798584 799885 . 2 674,521 0,781 -chrVII 798584 800199 HC_gene_3247_tx_26 36 + 798584 800199 . 1 1616 0 -chrVII 798584 800199 HC_gene_3247_tx_27 1 + 798584 800199 . 2 1172,370 0,1246 -chrVII 798725 800199 HC_gene_3247_tx_28 61 + 798725 800199 . 1 1475 0 -chrVII 798725 800199 HC_gene_3247_tx_29 1 + 798725 800199 . 2 280,890 0,585 -chrVII 799276 799885 HC_gene_3247_tx_30 1 + 799276 799885 . 1 610 0 -chrVII 799276 800199 HC_gene_3247_tx_31 60 + 799276 800199 . 1 924 0 -chrVII 799404 800199 HC_gene_3247_tx_32 63 + 799404 800199 . 1 796 0 -chrVII 799404 800199 HC_gene_3247_tx_33 1 + 799404 800199 . 2 187,538 0,258 -chrVII 799605 799885 HC_gene_3247_tx_34 1 + 799605 799885 . 1 281 0 -chrVII 799605 800199 HC_gene_3247_tx_35 147 + 799605 800199 . 1 595 0 -chrVII 799627 800031 LC_gene_3678_tx_1 1 - 799627 800031 . 1 405 0 -chrVII 799692 800199 HC_gene_3247_tx_36 41 + 799692 800199 . 1 508 0 -chrVII 799764 800199 HC_gene_3247_tx_37 187 + 799764 800199 . 1 436 0 -chrVII 799848 800199 HC_gene_3247_tx_38 78 + 799848 800199 . 1 352 0 -chrVII 800101 800457 MC_gene_3679_tx_1 1 - 800101 800457 . 1 357 0 -chrVII 800411 801082 HC_gene_3248_tx_1 2 + 800411 801082 . 1 672 0 -chrVII 800411 801877 HC_gene_3248_tx_2 10 + 800411 801877 . 1 1467 0 -chrVII 800411 801877 HC_gene_3248_tx_3 1 + 800411 801877 . 2 193,1142 0,325 -chrVII 800411 801877 HC_gene_3248_tx_4 1 + 800411 801877 . 2 474,853 0,614 -chrVII 800411 801998 HC_gene_3248_tx_5 14 + 800411 801998 . 1 1588 0 -chrVII 800411 801998 HC_gene_3248_tx_6 1 + 800411 801998 . 2 598,257 0,1331 -chrVII 800411 801998 HC_gene_3248_tx_7 1 + 800411 801998 . 2 474,418 0,1170 -chrVII 800535 801696 HC_gene_3680_tx_1 1 - 800535 801696 . 1 1162 0 -chrVII 800768 801877 HC_gene_3248_tx_8 2 + 800768 801877 . 1 1110 0 -chrVII 800768 801998 HC_gene_3248_tx_9 1 + 800768 801998 . 1 1231 0 -chrVII 800846 801877 HC_gene_3248_tx_10 2 + 800846 801877 . 1 1032 0 -chrVII 800846 801998 HC_gene_3248_tx_11 2 + 800846 801998 . 1 1153 0 -chrVII 801012 801696 HC_gene_3680_tx_2 7 - 801012 801696 . 1 685 0 -chrVII 801012 801881 HC_gene_3680_tx_3 2 - 801012 801881 . 1 870 0 -chrVII 801189 801881 HC_gene_3680_tx_4 1 - 801189 801881 . 1 693 0 -chrVII 802186 805102 HC_gene_3249_tx_1 1 + 802186 805102 . 1 2917 0 -chrVII 802186 805104 HC_gene_3249_tx_2 1 + 802186 805104 . 1 2919 0 -chrVII 802186 805110 HC_gene_3249_tx_3 1 + 802186 805110 . 1 2925 0 -chrVII 802186 805114 HC_gene_3249_tx_4 1 + 802186 805114 . 1 2929 0 -chrVII 802186 805116 HC_gene_3249_tx_5 1 + 802186 805116 . 1 2931 0 -chrVII 802186 805127 HC_gene_3249_tx_6 1 + 802186 805127 . 2 744,2139 0,803 -chrVII 802186 805133 HC_gene_3249_tx_7 1 + 802186 805133 . 1 2948 0 -chrVII 802186 805134 HC_gene_3249_tx_8 2 + 802186 805134 . 1 2949 0 -chrVII 802186 805135 HC_gene_3249_tx_9 1 + 802186 805135 . 1 2950 0 -chrVII 802186 805137 HC_gene_3249_tx_10 1 + 802186 805137 . 1 2952 0 -chrVII 802186 805138 HC_gene_3249_tx_11 1 + 802186 805138 . 1 2953 0 -chrVII 802186 805141 HC_gene_3249_tx_12 2 + 802186 805141 . 1 2956 0 -chrVII 802186 805144 HC_gene_3249_tx_13 1 + 802186 805144 . 1 2959 0 -chrVII 802186 805147 HC_gene_3249_tx_14 1 + 802186 805147 . 3 366,89,2320 0,483,642 -chrVII 802186 805147 HC_gene_3249_tx_15 1 + 802186 805147 . 1 2962 0 -chrVII 802186 805148 HC_gene_3249_tx_16 2 + 802186 805148 . 1 2963 0 -chrVII 802186 805149 HC_gene_3249_tx_17 1 + 802186 805149 . 1 2964 0 -chrVII 802186 805151 HC_gene_3249_tx_18 2 + 802186 805151 . 1 2966 0 -chrVII 802186 805157 HC_gene_3249_tx_19 1 + 802186 805157 . 1 2972 0 -chrVII 802186 805159 HC_gene_3249_tx_20 1 + 802186 805159 . 1 2974 0 -chrVII 802186 805160 HC_gene_3249_tx_21 1 + 802186 805160 . 3 800,572,72 0,1984,2903 -chrVII 802186 805164 HC_gene_3249_tx_22 1 + 802186 805164 . 1 2979 0 -chrVII 802186 805171 HC_gene_3249_tx_23 1 + 802186 805171 . 1 2986 0 -chrVII 802186 805172 HC_gene_3249_tx_24 2 + 802186 805172 . 1 2987 0 -chrVII 802186 805180 HC_gene_3249_tx_25 1 + 802186 805180 . 1 2995 0 -chrVII 802186 805185 HC_gene_3249_tx_26 1 + 802186 805185 . 1 3000 0 -chrVII 802186 805187 HC_gene_3249_tx_27 1 + 802186 805187 . 1 3002 0 -chrVII 802186 805188 HC_gene_3249_tx_28 1 + 802186 805188 . 1 3003 0 -chrVII 802186 805190 HC_gene_3249_tx_29 1 + 802186 805190 . 1 3005 0 -chrVII 802186 805191 HC_gene_3249_tx_30 1 + 802186 805191 . 1 3006 0 -chrVII 802186 805195 HC_gene_3249_tx_31 1 + 802186 805195 . 1 3010 0 -chrVII 802186 805204 HC_gene_3249_tx_32 1 + 802186 805204 . 1 3019 0 -chrVII 802186 805205 HC_gene_3249_tx_33 2 + 802186 805205 . 1 3020 0 -chrVII 802186 805206 HC_gene_3249_tx_34 1 + 802186 805206 . 1 3021 0 -chrVII 802186 805207 HC_gene_3249_tx_35 1 + 802186 805207 . 1 3022 0 -chrVII 802186 805215 HC_gene_3249_tx_36 1 + 802186 805215 . 1 3030 0 -chrVII 802186 805218 HC_gene_3249_tx_37 1 + 802186 805218 . 1 3033 0 -chrVII 802186 805219 HC_gene_3249_tx_38 1 + 802186 805219 . 1 3034 0 -chrVII 802186 805224 HC_gene_3249_tx_39 1 + 802186 805224 . 1 3039 0 -chrVII 802186 805232 HC_gene_3249_tx_40 1 + 802186 805232 . 1 3047 0 -chrVII 802186 805238 HC_gene_3249_tx_41 1 + 802186 805238 . 1 3053 0 -chrVII 802316 805096 HC_gene_3249_tx_42 1 + 802316 805096 . 5 303,1389,514,124,169 0,370,1843,2415,2612 -chrVII 802316 805109 HC_gene_3249_tx_43 1 + 802316 805109 . 1 2794 0 -chrVII 802316 805110 HC_gene_3249_tx_44 1 + 802316 805110 . 1 2795 0 -chrVII 802316 805114 HC_gene_3249_tx_45 1 + 802316 805114 . 1 2799 0 -chrVII 802316 805115 HC_gene_3249_tx_46 1 + 802316 805115 . 1 2800 0 -chrVII 802316 805126 HC_gene_3249_tx_47 1 + 802316 805126 . 1 2811 0 -chrVII 802316 805132 HC_gene_3249_tx_48 1 + 802316 805132 . 1 2817 0 -chrVII 802316 805132 HC_gene_3249_tx_49 1 + 802316 805132 . 2 2318,178 0,2639 -chrVII 802316 805134 HC_gene_3249_tx_50 1 + 802316 805134 . 1 2819 0 -chrVII 802316 805136 HC_gene_3249_tx_51 1 + 802316 805136 . 1 2821 0 -chrVII 802316 805141 HC_gene_3249_tx_52 1 + 802316 805141 . 1 2826 0 -chrVII 802316 805147 HC_gene_3249_tx_53 1 + 802316 805147 . 2 524,2179 0,653 -chrVII 802316 805148 HC_gene_3249_tx_54 1 + 802316 805148 . 1 2833 0 -chrVII 802316 805150 HC_gene_3249_tx_55 1 + 802316 805150 . 1 2835 0 -chrVII 802316 805159 HC_gene_3249_tx_56 1 + 802316 805159 . 1 2844 0 -chrVII 802316 805160 HC_gene_3249_tx_57 1 + 802316 805160 . 1 2845 0 -chrVII 802316 805168 HC_gene_3249_tx_58 1 + 802316 805168 . 1 2853 0 -chrVII 802316 805176 HC_gene_3249_tx_59 1 + 802316 805176 . 1 2861 0 -chrVII 802316 805179 HC_gene_3249_tx_60 1 + 802316 805179 . 1 2864 0 -chrVII 802316 805190 HC_gene_3249_tx_61 1 + 802316 805190 . 1 2875 0 -chrVII 802316 805191 HC_gene_3249_tx_62 1 + 802316 805191 . 1 2876 0 -chrVII 802316 805197 HC_gene_3249_tx_63 1 + 802316 805197 . 1 2882 0 -chrVII 802316 805222 HC_gene_3249_tx_64 1 + 802316 805222 . 1 2907 0 -chrVII 802316 805236 HC_gene_3249_tx_65 1 + 802316 805236 . 1 2921 0 -chrVII 802331 805116 HC_gene_3249_tx_66 1 + 802331 805116 . 2 1399,1308 0,1478 -chrVII 802445 805133 HC_gene_3249_tx_67 1 + 802445 805133 . 2 941,899 0,1790 -chrVII 802445 805141 HC_gene_3249_tx_68 1 + 802445 805141 . 1 2697 0 -chrVII 802445 805196 HC_gene_3249_tx_69 1 + 802445 805196 . 1 2752 0 -chrVII 802571 805103 HC_gene_3249_tx_70 1 + 802571 805103 . 1 2533 0 -chrVII 802571 805112 HC_gene_3249_tx_71 1 + 802571 805112 . 1 2542 0 -chrVII 802571 805124 HC_gene_3249_tx_72 1 + 802571 805124 . 1 2554 0 -chrVII 802571 805131 HC_gene_3249_tx_73 1 + 802571 805131 . 1 2561 0 -chrVII 802571 805205 HC_gene_3249_tx_74 1 + 802571 805205 . 1 2635 0 -chrVII 802571 805219 HC_gene_3249_tx_75 1 + 802571 805219 . 1 2649 0 -chrVII 802662 805144 HC_gene_3249_tx_76 1 + 802662 805144 . 1 2483 0 -chrVII 802662 805151 HC_gene_3249_tx_77 1 + 802662 805151 . 1 2490 0 -chrVII 802662 805188 HC_gene_3249_tx_78 1 + 802662 805188 . 1 2527 0 -chrVII 803494 805105 HC_gene_3249_tx_79 1 + 803494 805105 . 1 1612 0 -chrVII 803494 805110 HC_gene_3249_tx_80 1 + 803494 805110 . 1 1617 0 -chrVII 803494 805157 HC_gene_3249_tx_81 1 + 803494 805157 . 1 1664 0 -chrVII 803494 805176 HC_gene_3249_tx_82 1 + 803494 805176 . 1 1683 0 -chrVII 803494 805178 HC_gene_3249_tx_83 1 + 803494 805178 . 1 1685 0 -chrVII 803494 805187 HC_gene_3249_tx_84 1 + 803494 805187 . 1 1694 0 -chrVII 803494 805190 HC_gene_3249_tx_85 2 + 803494 805190 . 1 1697 0 -chrVII 803494 805191 HC_gene_3249_tx_86 1 + 803494 805191 . 1 1698 0 -chrVII 803494 805194 HC_gene_3249_tx_87 1 + 803494 805194 . 1 1701 0 -chrVII 803494 805224 HC_gene_3249_tx_88 1 + 803494 805224 . 1 1731 0 -chrVII 803714 805114 HC_gene_3249_tx_89 2 + 803714 805114 . 1 1401 0 -chrVII 803714 805116 HC_gene_3249_tx_90 1 + 803714 805116 . 1 1403 0 -chrVII 803714 805133 HC_gene_3249_tx_91 1 + 803714 805133 . 1 1420 0 -chrVII 803714 805134 HC_gene_3249_tx_92 1 + 803714 805134 . 1 1421 0 -chrVII 803714 805138 HC_gene_3249_tx_93 1 + 803714 805138 . 2 833,536 0,889 -chrVII 803714 805150 HC_gene_3249_tx_94 1 + 803714 805150 . 1 1437 0 -chrVII 803714 805162 HC_gene_3249_tx_95 1 + 803714 805162 . 1 1449 0 -chrVII 803714 805190 HC_gene_3249_tx_96 1 + 803714 805190 . 1 1477 0 -chrVII 803714 805205 HC_gene_3249_tx_97 1 + 803714 805205 . 1 1492 0 -chrVII 803714 805218 HC_gene_3249_tx_98 1 + 803714 805218 . 1 1505 0 -chrVII 803714 805229 HC_gene_3249_tx_99 1 + 803714 805229 . 1 1516 0 -chrVII 804048 805100 HC_gene_3249_tx_100 1 + 804048 805100 . 1 1053 0 -chrVII 804048 805133 HC_gene_3249_tx_101 2 + 804048 805133 . 1 1086 0 -chrVII 804048 805138 HC_gene_3249_tx_102 1 + 804048 805138 . 1 1091 0 -chrVII 804048 805147 HC_gene_3249_tx_103 1 + 804048 805147 . 1 1100 0 -chrVII 804048 805149 HC_gene_3249_tx_104 1 + 804048 805149 . 1 1102 0 -chrVII 804048 805151 HC_gene_3249_tx_105 1 + 804048 805151 . 1 1104 0 -chrVII 804048 805158 HC_gene_3249_tx_106 1 + 804048 805158 . 1 1111 0 -chrVII 804048 805164 HC_gene_3249_tx_107 1 + 804048 805164 . 1 1117 0 -chrVII 804048 805176 HC_gene_3249_tx_108 1 + 804048 805176 . 1 1129 0 -chrVII 804048 805177 HC_gene_3249_tx_109 1 + 804048 805177 . 1 1130 0 -chrVII 804048 805188 HC_gene_3249_tx_110 1 + 804048 805188 . 1 1141 0 -chrVII 804048 805191 HC_gene_3249_tx_111 1 + 804048 805191 . 1 1144 0 -chrVII 804048 805204 HC_gene_3249_tx_112 1 + 804048 805204 . 1 1157 0 -chrVII 804048 805205 HC_gene_3249_tx_113 1 + 804048 805205 . 1 1158 0 -chrVII 804048 805218 HC_gene_3249_tx_114 1 + 804048 805218 . 1 1171 0 -chrVII 804306 805097 HC_gene_3249_tx_115 1 + 804306 805097 . 1 792 0 -chrVII 804306 805099 HC_gene_3249_tx_116 1 + 804306 805099 . 1 794 0 -chrVII 804306 805102 HC_gene_3249_tx_117 1 + 804306 805102 . 1 797 0 -chrVII 804306 805137 HC_gene_3249_tx_118 1 + 804306 805137 . 1 832 0 -chrVII 804306 805141 HC_gene_3249_tx_119 1 + 804306 805141 . 1 836 0 -chrVII 804306 805147 HC_gene_3249_tx_120 1 + 804306 805147 . 1 842 0 -chrVII 804306 805150 HC_gene_3249_tx_121 1 + 804306 805150 . 1 845 0 -chrVII 804306 805155 HC_gene_3249_tx_122 1 + 804306 805155 . 1 850 0 -chrVII 804306 805159 HC_gene_3249_tx_123 1 + 804306 805159 . 1 854 0 -chrVII 804306 805162 HC_gene_3249_tx_124 1 + 804306 805162 . 1 857 0 -chrVII 804306 805172 HC_gene_3249_tx_125 2 + 804306 805172 . 1 867 0 -chrVII 804306 805188 HC_gene_3249_tx_126 1 + 804306 805188 . 1 883 0 -chrVII 804306 805190 HC_gene_3249_tx_127 2 + 804306 805190 . 1 885 0 -chrVII 804306 805191 HC_gene_3249_tx_128 1 + 804306 805191 . 1 886 0 -chrVII 804306 805196 HC_gene_3249_tx_129 2 + 804306 805196 . 1 891 0 -chrVII 804306 805205 HC_gene_3249_tx_130 1 + 804306 805205 . 1 900 0 -chrVII 804306 805220 HC_gene_3249_tx_131 1 + 804306 805220 . 1 915 0 -chrVII 805033 806074 HC_gene_3681_tx_1 74 - 805033 806074 . 1 1042 0 -chrVII 805033 806074 HC_gene_3681_tx_2 1 - 805033 806074 . 2 880,93 0,949 -chrVII 806253 807701 HC_gene_3682_tx_1 1 - 806253 807701 . 1 1449 0 -chrVII 806254 807079 HC_gene_3682_tx_46 1 - 806254 807079 . 1 826 0 -chrVII 806254 807577 HC_gene_3682_tx_2 1 - 806254 807577 . 1 1324 0 -chrVII 806254 807701 HC_gene_3682_tx_3 6 - 806254 807701 . 1 1448 0 -chrVII 806257 807701 HC_gene_3682_tx_4 2 - 806257 807701 . 1 1445 0 -chrVII 806258 807079 HC_gene_3682_tx_47 1 - 806258 807079 . 1 822 0 -chrVII 806258 807263 HC_gene_3682_tx_48 1 - 806258 807263 . 1 1006 0 -chrVII 806258 807577 HC_gene_3682_tx_5 1 - 806258 807577 . 1 1320 0 -chrVII 806258 807701 HC_gene_3682_tx_6 1 - 806258 807701 . 1 1444 0 -chrVII 806259 807701 HC_gene_3682_tx_7 3 - 806259 807701 . 1 1443 0 -chrVII 806260 807079 HC_gene_3682_tx_49 1 - 806260 807079 . 1 820 0 -chrVII 806260 807263 HC_gene_3682_tx_50 1 - 806260 807263 . 1 1004 0 -chrVII 806260 807577 HC_gene_3682_tx_8 1 - 806260 807577 . 1 1318 0 -chrVII 806261 807079 HC_gene_3682_tx_51 17 - 806261 807079 . 1 819 0 -chrVII 806261 807263 HC_gene_3682_tx_52 4 - 806261 807263 . 1 1003 0 -chrVII 806261 807577 HC_gene_3682_tx_9 1 - 806261 807577 . 1 1317 0 -chrVII 806261 807701 HC_gene_3682_tx_10 35 - 806261 807701 . 1 1441 0 -chrVII 806261 807701 HC_gene_3682_tx_11 1 - 806261 807701 . 2 495,868 0,573 -chrVII 806261 807795 HC_gene_3682_tx_12 1 - 806261 807795 . 1 1535 0 -chrVII 806262 807079 HC_gene_3682_tx_53 1 - 806262 807079 . 1 818 0 -chrVII 806262 807701 HC_gene_3682_tx_13 2 - 806262 807701 . 1 1440 0 -chrVII 806263 807079 HC_gene_3682_tx_54 1 - 806263 807079 . 1 817 0 -chrVII 806263 807701 HC_gene_3682_tx_14 5 - 806263 807701 . 1 1439 0 -chrVII 806264 807079 HC_gene_3682_tx_55 10 - 806264 807079 . 1 816 0 -chrVII 806264 807263 HC_gene_3682_tx_56 2 - 806264 807263 . 1 1000 0 -chrVII 806264 807577 HC_gene_3682_tx_15 6 - 806264 807577 . 1 1314 0 -chrVII 806264 807701 HC_gene_3682_tx_16 61 - 806264 807701 . 1 1438 0 -chrVII 806265 807079 HC_gene_3682_tx_57 6 - 806265 807079 . 1 815 0 -chrVII 806265 807263 HC_gene_3682_tx_58 2 - 806265 807263 . 1 999 0 -chrVII 806265 807577 HC_gene_3682_tx_17 2 - 806265 807577 . 1 1313 0 -chrVII 806265 807701 HC_gene_3682_tx_18 11 - 806265 807701 . 1 1437 0 -chrVII 806265 807701 HC_gene_3682_tx_19 1 - 806265 807701 . 2 501,832 0,605 -chrVII 806266 807079 HC_gene_3682_tx_59 11 - 806266 807079 . 1 814 0 -chrVII 806266 807263 HC_gene_3682_tx_60 5 - 806266 807263 . 1 998 0 -chrVII 806266 807577 HC_gene_3682_tx_20 2 - 806266 807577 . 1 1312 0 -chrVII 806266 807701 HC_gene_3682_tx_21 20 - 806266 807701 . 1 1436 0 -chrVII 806266 807701 HC_gene_3682_tx_22 1 - 806266 807701 . 2 848,380 0,1056 -chrVII 806267 807079 HC_gene_3682_tx_61 32 - 806267 807079 . 1 813 0 -chrVII 806267 807263 HC_gene_3682_tx_62 8 - 806267 807263 . 1 997 0 -chrVII 806267 807263 HC_gene_3682_tx_63 1 - 806267 807263 . 2 339,595 0,402 -chrVII 806267 807577 HC_gene_3682_tx_23 8 - 806267 807577 . 1 1311 0 -chrVII 806267 807701 HC_gene_3682_tx_24 80 - 806267 807701 . 1 1435 0 -chrVII 806267 807701 HC_gene_3682_tx_25 1 - 806267 807701 . 2 401,184 0,1251 -chrVII 806267 807795 HC_gene_3682_tx_26 3 - 806267 807795 . 1 1529 0 -chrVII 806268 807079 HC_gene_3682_tx_64 1 - 806268 807079 . 1 812 0 -chrVII 806268 807701 HC_gene_3682_tx_27 2 - 806268 807701 . 1 1434 0 -chrVII 806269 807079 HC_gene_3682_tx_65 2 - 806269 807079 . 1 811 0 -chrVII 806269 807701 HC_gene_3682_tx_28 3 - 806269 807701 . 1 1433 0 -chrVII 806270 807079 HC_gene_3682_tx_66 1 - 806270 807079 . 2 480,237 0,573 -chrVII 806270 807079 HC_gene_3682_tx_67 1 - 806270 807079 . 1 810 0 -chrVII 806270 807577 HC_gene_3682_tx_29 1 - 806270 807577 . 1 1308 0 -chrVII 806270 807701 HC_gene_3682_tx_30 7 - 806270 807701 . 1 1432 0 -chrVII 806270 807795 HC_gene_3682_tx_31 1 - 806270 807795 . 1 1526 0 -chrVII 806271 807079 HC_gene_3682_tx_68 1 - 806271 807079 . 1 809 0 -chrVII 806271 807263 HC_gene_3682_tx_69 7 - 806271 807263 . 1 993 0 -chrVII 806271 807577 HC_gene_3682_tx_32 2 - 806271 807577 . 1 1307 0 -chrVII 806271 807701 HC_gene_3682_tx_33 9 - 806271 807701 . 1 1431 0 -chrVII 806271 807701 HC_gene_3682_tx_34 1 - 806271 807701 . 2 571,805 0,626 -chrVII 806271 807795 HC_gene_3682_tx_35 1 - 806271 807795 . 1 1525 0 -chrVII 806272 807079 HC_gene_3682_tx_70 13 - 806272 807079 . 1 808 0 -chrVII 806272 807263 HC_gene_3682_tx_71 4 - 806272 807263 . 1 992 0 -chrVII 806272 807577 HC_gene_3682_tx_36 1 - 806272 807577 . 1 1306 0 -chrVII 806272 807701 HC_gene_3682_tx_37 24 - 806272 807701 . 1 1430 0 -chrVII 806272 807795 HC_gene_3682_tx_38 2 - 806272 807795 . 1 1524 0 -chrVII 806273 807079 HC_gene_3682_tx_72 4 - 806273 807079 . 1 807 0 -chrVII 806273 807577 HC_gene_3682_tx_39 2 - 806273 807577 . 1 1305 0 -chrVII 806273 807577 HC_gene_3682_tx_40 1 - 806273 807577 . 2 532,342 0,963 -chrVII 806273 807701 HC_gene_3682_tx_41 12 - 806273 807701 . 1 1429 0 -chrVII 806273 807795 HC_gene_3682_tx_42 1 - 806273 807795 . 1 1523 0 -chrVII 806274 807079 HC_gene_3682_tx_73 2 - 806274 807079 . 1 806 0 -chrVII 806274 807263 HC_gene_3682_tx_74 2 - 806274 807263 . 1 990 0 -chrVII 806274 807577 HC_gene_3682_tx_43 1 - 806274 807577 . 1 1304 0 -chrVII 806274 807701 HC_gene_3682_tx_44 1 - 806274 807701 . 2 566,547 0,881 -chrVII 806274 807701 HC_gene_3682_tx_45 8 - 806274 807701 . 1 1428 0 -chrVII 808359 809072 HC_gene_3683_tx_1 81 - 808359 809072 . 1 714 0 -chrVII 808359 809072 HC_gene_3683_tx_2 1 - 808359 809072 . 2 43,549 0,165 -chrVII 808359 809503 HC_gene_3683_tx_3 269 - 808359 809503 . 1 1145 0 -chrVII 808359 809503 HC_gene_3683_tx_4 1 - 808359 809503 . 2 400,670 0,475 -chrVII 808359 809503 HC_gene_3683_tx_5 1 - 808359 809503 . 2 48,878 0,267 -chrVII 808359 809503 HC_gene_3683_tx_6 1 - 808359 809503 . 2 754,240 0,905 -chrVII 808359 809503 HC_gene_3683_tx_7 1 - 808359 809503 . 2 585,195 0,950 -chrVII 808359 809503 HC_gene_3683_tx_8 1 - 808359 809503 . 2 593,161 0,984 -chrVII 808359 809503 HC_gene_3683_tx_9 1 - 808359 809503 . 2 714,138 0,1007 -chrVII 808359 809503 HC_gene_3683_tx_10 1 - 808359 809503 . 2 469,323 0,822 -chrVII 808359 809503 HC_gene_3683_tx_11 1 - 808359 809503 . 2 877,173 0,972 -chrVII 808562 809072 HC_gene_3683_tx_15 13 - 808562 809072 . 1 511 0 -chrVII 808562 809503 HC_gene_3683_tx_12 35 - 808562 809503 . 1 942 0 -chrVII 808562 809503 HC_gene_3683_tx_13 1 - 808562 809503 . 2 504,195 0,747 -chrVII 808562 809503 HC_gene_3683_tx_14 1 - 808562 809503 . 2 414,383 0,559 -chrVII 809989 810723 HC_gene_3250_tx_1 4 + 809989 810723 . 1 735 0 -chrVII 810200 810723 HC_gene_3250_tx_2 91 + 810200 810723 . 1 524 0 -chrVII 810628 810896 HC_gene_3684_tx_1 7 - 810628 810896 . 1 269 0 -chrVII 811140 811771 MC_gene_3251_tx_1 1 + 811140 811771 . 1 632 0 -chrVII 817444 822024 LC_gene_3685_tx_1 1 - 817444 822024 . 2 1855,2626 0,1955 -chrVII 822537 823254 LC_gene_3252_tx_1 1 + 822537 823254 . 1 718 0 -chrVII 823324 823698 LC_gene_3686_tx_1 1 - 823324 823698 . 1 375 0 -chrVII 823996 827339 HC_gene_3253_tx_1 1 + 823996 827339 . 2 1860,1379 0,1965 -chrVII 824022 827339 HC_gene_3253_tx_2 52 + 824022 827339 . 1 3318 0 -chrVII 824022 827339 HC_gene_3253_tx_3 1 + 824022 827339 . 2 2432,788 0,2530 -chrVII 824162 827339 HC_gene_3253_tx_4 7 + 824162 827339 . 1 3178 0 -chrVII 824162 827339 HC_gene_3253_tx_5 1 + 824162 827339 . 3 1107,1145,737 0,1249,2441 -chrVII 824162 827339 HC_gene_3253_tx_6 1 + 824162 827339 . 2 2266,848 0,2330 -chrVII 824162 827339 HC_gene_3253_tx_7 1 + 824162 827339 . 2 1279,1082 0,2096 -chrVII 824162 827339 HC_gene_3253_tx_8 1 + 824162 827339 . 2 1264,1831 0,1347 -chrVII 824242 827339 HC_gene_3253_tx_9 1 + 824242 827339 . 1 3098 0 -chrVII 824806 827339 HC_gene_3253_tx_10 5 + 824806 827339 . 1 2534 0 -chrVII 824806 827339 HC_gene_3253_tx_11 1 + 824806 827339 . 2 1459,1019 0,1515 -chrVII 824918 827339 HC_gene_3253_tx_12 13 + 824918 827339 . 1 2422 0 -chrVII 824918 827339 HC_gene_3253_tx_13 1 + 824918 827339 . 2 573,1749 0,673 -chrVII 825013 827339 HC_gene_3253_tx_14 7 + 825013 827339 . 1 2327 0 -chrVII 825013 827339 HC_gene_3253_tx_15 1 + 825013 827339 . 2 640,1631 0,696 -chrVII 825202 827339 HC_gene_3253_tx_16 16 + 825202 827339 . 1 2138 0 -chrVII 825572 827339 HC_gene_3253_tx_17 15 + 825572 827339 . 1 1768 0 -chrVII 825572 827339 HC_gene_3253_tx_18 1 + 825572 827339 . 2 1047,683 0,1085 -chrVII 825844 827339 HC_gene_3253_tx_19 19 + 825844 827339 . 1 1496 0 -chrVII 826286 827339 HC_gene_3253_tx_20 28 + 826286 827339 . 1 1054 0 -chrVII 826492 827339 HC_gene_3253_tx_21 34 + 826492 827339 . 1 848 0 -chrVII 826630 827339 HC_gene_3253_tx_22 44 + 826630 827339 . 1 710 0 -chrVII 827009 828128 LC_gene_3687_tx_1 1 - 827009 828128 . 1 1120 0 -chrVII 827494 828648 HC_gene_3254_tx_1 50 + 827494 828648 . 1 1155 0 -chrVII 827494 828648 HC_gene_3254_tx_2 1 + 827494 828648 . 2 46,527 0,628 -chrVII 827494 828648 HC_gene_3254_tx_3 1 + 827494 828648 . 2 738,339 0,816 -chrVII 827494 828648 HC_gene_3254_tx_4 1 + 827494 828648 . 2 433,661 0,494 -chrVII 827494 828648 HC_gene_3254_tx_5 1 + 827494 828648 . 2 178,841 0,314 -chrVII 827748 828648 HC_gene_3254_tx_6 8 + 827748 828648 . 1 901 0 -chrVII 828575 828789 MC_gene_3688_tx_1 1 - 828575 828789 . 1 215 0 -chrVII 829061 830217 HC_gene_3255_tx_1 5 + 829061 830217 . 1 1157 0 -chrVII 829061 830315 HC_gene_3255_tx_2 47 + 829061 830315 . 1 1255 0 -chrVII 829399 830315 HC_gene_3255_tx_3 11 + 829399 830315 . 1 917 0 -chrVII 829469 830177 LC_gene_3689_tx_1 1 - 829469 830177 . 1 709 0 -chrVII 830434 832281 HC_gene_3256_tx_1 4 + 830434 832281 . 1 1848 0 -chrVII 831164 832281 HC_gene_3256_tx_2 2 + 831164 832281 . 1 1118 0 -chrVII 831733 832178 HC_gene_3690_tx_1 13 - 831733 832178 . 1 446 0 -chrVII 832391 833303 HC_gene_3257_tx_1 316 + 832391 833303 . 1 913 0 -chrVII 832391 833303 HC_gene_3257_tx_2 1 + 832391 833303 . 2 318,543 0,370 -chrVII 832391 833303 HC_gene_3257_tx_3 1 + 832391 833303 . 2 345,517 0,396 -chrVII 832391 833303 HC_gene_3257_tx_4 1 + 832391 833303 . 2 809,29 0,884 -chrVII 832391 833303 HC_gene_3257_tx_5 1 + 832391 833303 . 2 797,29 0,884 -chrVII 832391 833303 HC_gene_3257_tx_6 1 + 832391 833303 . 2 753,29 0,884 -chrVII 832391 833423 HC_gene_3257_tx_7 4 + 832391 833423 . 1 1033 0 -chrVII 832506 833303 HC_gene_3257_tx_8 28 + 832506 833303 . 1 798 0 -chrVII 832506 833303 HC_gene_3257_tx_9 1 + 832506 833303 . 2 707,29 0,769 -chrVII 832506 833303 HC_gene_3257_tx_10 1 + 832506 833303 . 2 152,591 0,207 -chrVII 832506 833423 HC_gene_3257_tx_11 3 + 832506 833423 . 1 918 0 -chrVII 832606 833303 HC_gene_3257_tx_12 69 + 832606 833303 . 1 698 0 -chrVII 832741 833303 HC_gene_3257_tx_13 24 + 832741 833303 . 1 563 0 -chrVII 832800 833303 HC_gene_3257_tx_14 91 + 832800 833303 . 1 504 0 -chrVII 832800 833423 HC_gene_3257_tx_15 3 + 832800 833423 . 1 624 0 -chrVII 833268 833954 HC_gene_3691_tx_1 5 - 833268 833954 . 1 687 0 -chrVII 833268 834524 HC_gene_3691_tx_2 24 - 833268 834524 . 1 1257 0 -chrVII 834103 834571 HC_gene_3258_tx_1 7 + 834103 834571 . 1 469 0 -chrVII 834588 835930 HC_gene_3692_tx_1 27 - 834588 835930 . 1 1343 0 -chrVII 834588 835930 HC_gene_3692_tx_2 1 - 834588 835930 . 2 438,792 0,551 -chrVII 834588 835930 HC_gene_3692_tx_3 1 - 834588 835930 . 2 411,877 0,466 -chrVII 835580 835952 LC_gene_3259_tx_1 1 + 835580 835952 . 1 373 0 -chrVII 836018 836431 HC_gene_3693_tx_1 77 - 836018 836431 . 1 414 0 -chrVII 836018 836556 HC_gene_3693_tx_2 14 - 836018 836556 . 1 539 0 -chrVII 836018 836765 HC_gene_3693_tx_3 342 - 836018 836765 . 1 748 0 -chrVII 837085 840834 HC_gene_3260_tx_1 3 + 837085 840834 . 1 3750 0 -chrVII 837085 840834 HC_gene_3260_tx_2 1 + 837085 840834 . 2 1354,2333 0,1417 -chrVII 838151 840834 HC_gene_3260_tx_3 1 + 838151 840834 . 1 2684 0 -chrVII 838488 839187 MC_gene_3694_tx_1 1 - 838488 839187 . 1 700 0 -chrVII 839549 839976 MC_gene_3695_tx_1 1 - 839549 839976 . 1 428 0 -chrVII 839720 840381 MC_gene_3696_tx_1 1 - 839720 840381 . 1 662 0 -chrVII 840179 840834 HC_gene_3261_tx_1 16 + 840179 840834 . 1 656 0 -chrVII 840179 840989 HC_gene_3261_tx_2 1 + 840179 840989 . 1 811 0 -chrVII 840714 842575 HC_gene_3697_tx_1 7 - 840714 842575 . 1 1862 0 -chrVII 842702 843252 HC_gene_3698_tx_1 12 - 842702 843252 . 1 551 0 -chrVII 842702 843628 HC_gene_3698_tx_2 153 - 842702 843628 . 1 927 0 -chrVII 843812 845013 HC_gene_3262_tx_1 22 + 843812 845013 . 1 1202 0 -chrVII 843812 845013 HC_gene_3262_tx_2 1 + 843812 845013 . 2 598,531 0,671 -chrVII 843812 845013 HC_gene_3262_tx_3 1 + 843812 845013 . 2 598,551 0,651 -chrVII 843812 845178 HC_gene_3262_tx_4 18 + 843812 845178 . 1 1367 0 -chrVII 843812 845178 HC_gene_3262_tx_5 1 + 843812 845178 . 2 91,788 0,579 -chrVII 843812 845235 HC_gene_3262_tx_6 15 + 843812 845235 . 1 1424 0 -chrVII 844076 845013 HC_gene_3262_tx_7 2 + 844076 845013 . 1 938 0 -chrVII 844076 845178 HC_gene_3262_tx_8 1 + 844076 845178 . 1 1103 0 -chrVII 844076 845235 HC_gene_3262_tx_9 3 + 844076 845235 . 1 1160 0 -chrVII 844233 845013 HC_gene_3262_tx_10 1 + 844233 845013 . 1 781 0 -chrVII 844233 845178 HC_gene_3262_tx_11 1 + 844233 845178 . 2 157,645 0,301 -chrVII 844233 845178 HC_gene_3262_tx_12 1 + 844233 845178 . 1 946 0 -chrVII 844233 845235 HC_gene_3262_tx_13 2 + 844233 845235 . 1 1003 0 -chrVII 844415 845013 HC_gene_3262_tx_16 3 + 844415 845013 . 1 599 0 -chrVII 844415 845178 HC_gene_3262_tx_14 3 + 844415 845178 . 1 764 0 -chrVII 844415 845235 HC_gene_3262_tx_15 2 + 844415 845235 . 1 821 0 -chrVII 845662 845869 MC_gene_3263_tx_1 1 + 845662 845869 . 1 208 0 -chrVII 845768 846354 HC_gene_3699_tx_1 94 - 845768 846354 . 1 587 0 -chrVII 845768 846354 HC_gene_3699_tx_2 1 - 845768 846354 . 2 279,244 0,343 -chrVII 846514 846834 HC_gene_3264_tx_1 20 + 846514 846834 . 1 321 0 -chrVII 846514 846892 HC_gene_3264_tx_2 2 + 846514 846892 . 1 379 0 -chrVII 846752 847085 HC_gene_3700_tx_1 43 - 846752 847085 . 1 334 0 -chrVII 846752 847151 HC_gene_3700_tx_2 11 - 846752 847151 . 1 400 0 -chrVII 846752 847235 HC_gene_3700_tx_3 64 - 846752 847235 . 1 484 0 -chrVII 846752 847307 HC_gene_3700_tx_4 12 - 846752 847307 . 1 556 0 -chrVII 846752 847385 HC_gene_3700_tx_5 77 - 846752 847385 . 1 634 0 -chrVII 846752 847796 HC_gene_3700_tx_6 34 - 846752 847796 . 1 1045 0 -chrVII 846752 847932 HC_gene_3700_tx_7 11 - 846752 847932 . 1 1181 0 -chrVII 846752 847990 HC_gene_3700_tx_8 43 - 846752 847990 . 1 1239 0 -chrVII 846752 848225 HC_gene_3700_tx_9 32 - 846752 848225 . 1 1474 0 -chrVII 846752 848303 HC_gene_3700_tx_10 12 - 846752 848303 . 1 1552 0 -chrVII 846752 848303 HC_gene_3700_tx_11 1 - 846752 848303 . 2 511,972 0,580 -chrVII 846752 848440 HC_gene_3700_tx_12 1 - 846752 848440 . 2 1384,155 0,1534 -chrVII 846752 848451 HC_gene_3700_tx_13 263 - 846752 848451 . 1 1700 0 -chrVII 846752 848451 HC_gene_3700_tx_14 1 - 846752 848451 . 2 889,725 0,975 -chrVII 846752 848451 HC_gene_3700_tx_15 1 - 846752 848451 . 2 914,611 0,1089 -chrVII 846752 848451 HC_gene_3700_tx_16 1 - 846752 848451 . 2 1505,66 0,1634 -chrVII 846752 848451 HC_gene_3700_tx_17 1 - 846752 848451 . 2 802,419 0,1281 -chrVII 846752 848451 HC_gene_3700_tx_18 1 - 846752 848451 . 2 569,1019 0,681 -chrVII 846752 848451 HC_gene_3700_tx_19 1 - 846752 848451 . 2 689,968 0,732 -chrVII 846752 848451 HC_gene_3700_tx_20 1 - 846752 848451 . 2 721,905 0,795 -chrVII 846752 848451 HC_gene_3700_tx_21 1 - 846752 848451 . 2 788,587 0,1113 -chrVII 846752 848451 HC_gene_3700_tx_22 1 - 846752 848451 . 2 941,542 0,1158 -chrVII 846752 848451 HC_gene_3700_tx_23 1 - 846752 848451 . 2 694,838 0,862 -chrVII 846752 848451 HC_gene_3700_tx_24 1 - 846752 848451 . 2 1163,260 0,1440 -chrVII 846752 848451 HC_gene_3700_tx_25 1 - 846752 848451 . 2 818,619 0,1081 -chrVII 848584 849424 MC_gene_3265_tx_1 1 + 848584 849424 . 1 841 0 -chrVII 848613 850296 HC_gene_3701_tx_1 1 - 848613 850296 . 1 1684 0 -chrVII 848613 850499 HC_gene_3701_tx_2 6 - 848613 850499 . 1 1887 0 -chrVII 849596 850674 LC_gene_3266_tx_1 1 + 849596 850674 . 1 1079 0 -chrVII 850796 851033 HC_gene_3267_tx_1 4 + 850796 851033 . 1 238 0 -chrVII 850910 851986 HC_gene_3702_tx_1 1 - 850910 851986 . 2 657,321 0,756 -chrVII 850910 851986 HC_gene_3702_tx_2 5 - 850910 851986 . 1 1077 0 -chrVII 850910 852125 HC_gene_3702_tx_3 20 - 850910 852125 . 1 1216 0 -chrVII 850910 852265 HC_gene_3702_tx_4 17 - 850910 852265 . 1 1356 0 -chrVII 850910 852599 HC_gene_3702_tx_5 4 - 850910 852599 . 1 1690 0 -chrVII 850910 852658 HC_gene_3702_tx_6 9 - 850910 852658 . 1 1749 0 -chrVII 850910 852658 HC_gene_3702_tx_7 1 - 850910 852658 . 3 92,619,461 0,138,1288 -chrVII 850910 852794 HC_gene_3702_tx_8 4 - 850910 852794 . 1 1885 0 -chrVII 850910 852872 HC_gene_3702_tx_9 11 - 850910 852872 . 1 1963 0 -chrVII 850910 852990 HC_gene_3702_tx_10 1 - 850910 852990 . 1 2081 0 -chrVII 850910 853214 HC_gene_3702_tx_11 9 - 850910 853214 . 1 2305 0 -chrVII 850910 853214 HC_gene_3702_tx_12 1 - 850910 853214 . 2 491,615 0,1690 -chrVII 850910 853214 HC_gene_3702_tx_13 1 - 850910 853214 . 2 2137,109 0,2196 -chrVII 850910 853312 HC_gene_3702_tx_14 2 - 850910 853312 . 1 2403 0 -chrVII 850910 853428 HC_gene_3702_tx_15 42 - 850910 853428 . 1 2519 0 -chrVII 850910 853428 HC_gene_3702_tx_16 1 - 850910 853428 . 2 1033,1425 0,1094 -chrVII 850910 853428 HC_gene_3702_tx_17 1 - 850910 853428 . 2 1268,600 0,1919 -chrVII 850910 853428 HC_gene_3702_tx_18 1 - 850910 853428 . 2 912,1525 0,994 -chrVII 850910 853428 HC_gene_3702_tx_19 1 - 850910 853428 . 2 1305,1141 0,1378 -chrVII 850910 853428 HC_gene_3702_tx_20 1 - 850910 853428 . 2 1020,1425 0,1094 -chrVII 850910 853428 HC_gene_3702_tx_21 1 - 850910 853428 . 2 1065,1385 0,1134 -chrVII 850910 853428 HC_gene_3702_tx_22 1 - 850910 853428 . 2 1026,1408 0,1111 -chrVII 851017 853268 LC_gene_3268_tx_1 1 + 851017 853268 . 1 2252 0 -chrVII 853583 854529 HC_gene_3703_tx_1 4 - 853583 854529 . 1 947 0 -chrVII 853583 854923 HC_gene_3703_tx_2 18 - 853583 854923 . 1 1341 0 -chrVII 853583 854923 HC_gene_3703_tx_3 1 - 853583 854923 . 2 616,669 0,672 -chrVII 853769 854409 LC_gene_3269_tx_1 1 + 853769 854409 . 1 641 0 -chrVII 855140 855728 HC_gene_3704_tx_1 134 - 855140 855728 . 1 589 0 -chrVII 855140 855964 HC_gene_3704_tx_2 163 - 855140 855964 . 1 825 0 -chrVII 855140 855964 HC_gene_3704_tx_3 1 - 855140 855964 . 2 178,585 0,240 -chrVII 855140 856148 HC_gene_3704_tx_4 54 - 855140 856148 . 1 1009 0 -chrVII 855140 856148 HC_gene_3704_tx_5 1 - 855140 856148 . 2 624,315 0,694 -chrVII 855140 856329 HC_gene_3704_tx_6 430 - 855140 856329 . 1 1190 0 -chrVII 855140 856329 HC_gene_3704_tx_7 1 - 855140 856329 . 2 769,221 0,969 -chrVII 855140 856329 HC_gene_3704_tx_8 1 - 855140 856329 . 2 811,302 0,888 -chrVII 855140 856329 HC_gene_3704_tx_9 1 - 855140 856329 . 2 491,599 0,591 -chrVII 855140 856329 HC_gene_3704_tx_10 1 - 855140 856329 . 3 265,55,715 0,310,475 -chrVII 855140 856329 HC_gene_3704_tx_11 1 - 855140 856329 . 2 419,715 0,475 -chrVII 855140 856329 HC_gene_3704_tx_12 1 - 855140 856329 . 2 267,162 0,1028 -chrVII 855140 856329 HC_gene_3704_tx_13 1 - 855140 856329 . 2 58,1078 0,112 -chrVII 855140 856423 HC_gene_3704_tx_14 12 - 855140 856423 . 1 1284 0 -chrVII 855140 856423 HC_gene_3704_tx_15 1 - 855140 856423 . 2 867,324 0,960 -chrVII 855140 856511 HC_gene_3704_tx_16 293 - 855140 856511 . 1 1372 0 -chrVII 855140 856511 HC_gene_3704_tx_17 1 - 855140 856511 . 2 54,897 0,475 -chrVII 855140 856511 HC_gene_3704_tx_18 1 - 855140 856511 . 2 532,433 0,939 -chrVII 857878 859272 HC_gene_3705_tx_1 1 - 857878 859272 . 1 1395 0 -chrVII 858266 858697 HC_gene_3270_tx_1 57 + 858266 858697 . 1 432 0 -chrVII 858266 858787 HC_gene_3270_tx_2 301 + 858266 858787 . 1 522 0 -chrVII 858385 858787 HC_gene_3270_tx_3 19 + 858385 858787 . 1 403 0 -chrVII 858690 859151 HC_gene_3705_tx_2 59 - 858690 859151 . 1 462 0 -chrVII 858690 859272 HC_gene_3705_tx_3 231 - 858690 859272 . 1 583 0 -chrVII 858690 859272 HC_gene_3705_tx_4 1 - 858690 859272 . 2 405,64 0,519 -chrVII 858690 859496 HC_gene_3705_tx_5 39 - 858690 859496 . 1 807 0 -chrVII 858690 859496 HC_gene_3705_tx_6 99 - 858690 859496 . 2 571,23 0,784 -chrVII 858690 859496 HC_gene_3705_tx_7 1 - 858690 859496 . 2 221,467 0,340 -chrVII 858690 859532 HC_gene_3705_tx_8 1 - 858690 859532 . 2 558,51 0,792 -chrVII 858690 859541 HC_gene_3705_tx_9 1 - 858690 859541 . 2 537,60 0,792 -chrVII 858690 859549 HC_gene_3705_tx_10 1 - 858690 859549 . 2 571,44 0,816 -chrVII 859176 859496 HC_gene_3705_tx_11 1 - 859176 859496 . 1 321 0 -chrVII 859562 859908 MC_gene_3271_tx_1 1 + 859562 859908 . 1 347 0 -chrVII 859818 860226 HC_gene_3706_tx_1 15 - 859818 860226 . 1 409 0 -chrVII 859818 860226 HC_gene_3706_tx_2 1 - 859818 860226 . 2 295,66 0,343 -chrVII 859818 860340 HC_gene_3706_tx_3 11 - 859818 860340 . 1 523 0 -chrVII 859818 860431 HC_gene_3706_tx_4 17 - 859818 860431 . 1 614 0 -chrVII 859818 862527 HC_gene_3706_tx_5 1 - 859818 862527 . 1 2710 0 -chrVII 863500 866128 MC_gene_3707_tx_1 1 - 863500 866128 . 1 2629 0 -chrVII 863533 865364 MC_gene_3707_tx_2 1 - 863533 865364 . 1 1832 0 -chrVII 864761 864974 MC_gene_3707_tx_3 1 - 864761 864974 . 1 214 0 -chrVII 865927 866342 MC_gene_3272_tx_1 1 + 865927 866342 . 1 416 0 -chrVII 866215 866460 HC_gene_3708_tx_1 20 - 866215 866460 . 1 246 0 -chrVII 866215 866545 HC_gene_3708_tx_2 78 - 866215 866545 . 1 331 0 -chrVII 866215 866731 HC_gene_3708_tx_3 65 - 866215 866731 . 1 517 0 -chrVII 866215 866845 HC_gene_3708_tx_4 32 - 866215 866845 . 1 631 0 -chrVII 866215 867020 HC_gene_3708_tx_7 29 - 866215 867020 . 1 806 0 -chrVII 866215 867229 HC_gene_3708_tx_9 30 - 866215 867229 . 1 1015 0 -chrVII 866215 867388 HC_gene_3708_tx_10 23 - 866215 867388 . 1 1174 0 -chrVII 866215 867487 HC_gene_3708_tx_11 9 - 866215 867487 . 1 1273 0 -chrVII 866215 867553 HC_gene_3708_tx_12 252 - 866215 867553 . 1 1339 0 -chrVII 866315 866545 HC_gene_3708_tx_16 4 - 866315 866545 . 1 231 0 -chrVII 866315 866731 HC_gene_3708_tx_5 9 - 866315 866731 . 1 417 0 -chrVII 866315 866845 HC_gene_3708_tx_6 5 - 866315 866845 . 1 531 0 -chrVII 866315 867020 HC_gene_3708_tx_8 2 - 866315 867020 . 1 706 0 -chrVII 866315 867229 HC_gene_3708_tx_13 8 - 866315 867229 . 1 915 0 -chrVII 866315 867388 HC_gene_3708_tx_14 6 - 866315 867388 . 1 1074 0 -chrVII 866315 867553 HC_gene_3708_tx_15 52 - 866315 867553 . 1 1239 0 -chrVII 866690 867198 LC_gene_3273_tx_1 1 + 866690 867198 . 1 509 0 -chrVII 867746 870034 HC_gene_3274_tx_1 45 + 867746 870034 . 1 2289 0 -chrVII 867746 870034 HC_gene_3274_tx_2 1 + 867746 870034 . 2 137,2021 0,268 -chrVII 867746 870034 HC_gene_3274_tx_3 1 + 867746 870034 . 2 1403,823 0,1466 -chrVII 867746 870034 HC_gene_3274_tx_4 1 + 867746 870034 . 2 1175,1033 0,1256 -chrVII 867746 870034 HC_gene_3274_tx_5 1 + 867746 870034 . 2 1266,398 0,1891 -chrVII 867746 870034 HC_gene_3274_tx_6 1 + 867746 870034 . 2 818,1321 0,968 -chrVII 867746 870034 HC_gene_3274_tx_7 1 + 867746 870034 . 2 796,957 0,1332 -chrVII 867746 870166 HC_gene_3274_tx_8 6 + 867746 870166 . 1 2421 0 -chrVII 868014 870034 HC_gene_3274_tx_9 4 + 868014 870034 . 1 2021 0 -chrVII 868014 870166 HC_gene_3274_tx_10 1 + 868014 870166 . 1 2153 0 -chrVII 868101 870034 HC_gene_3274_tx_11 2 + 868101 870034 . 1 1934 0 -chrVII 868101 870034 HC_gene_3274_tx_12 1 + 868101 870034 . 2 186,814 0,1120 -chrVII 868101 870166 HC_gene_3274_tx_13 1 + 868101 870166 . 1 2066 0 -chrVII 868575 870034 HC_gene_3274_tx_14 5 + 868575 870034 . 1 1460 0 -chrVII 868575 870166 HC_gene_3274_tx_15 1 + 868575 870166 . 1 1592 0 -chrVII 868724 870034 HC_gene_3274_tx_16 2 + 868724 870034 . 1 1311 0 -chrVII 868724 870166 HC_gene_3274_tx_17 1 + 868724 870166 . 1 1443 0 -chrVII 868859 870034 HC_gene_3274_tx_18 20 + 868859 870034 . 1 1176 0 -chrVII 868859 870166 HC_gene_3274_tx_19 1 + 868859 870166 . 1 1308 0 -chrVII 869026 870034 HC_gene_3274_tx_20 9 + 869026 870034 . 1 1009 0 -chrVII 869294 870034 HC_gene_3274_tx_21 8 + 869294 870034 . 1 741 0 -chrVII 869345 870034 HC_gene_3274_tx_22 7 + 869345 870034 . 1 690 0 -chrVII 869345 870166 HC_gene_3274_tx_23 2 + 869345 870166 . 1 822 0 -chrVII 869671 870034 HC_gene_3274_tx_24 23 + 869671 870034 . 1 364 0 -chrVII 869671 870166 HC_gene_3274_tx_25 4 + 869671 870166 . 1 496 0 -chrVII 870086 870427 HC_gene_3709_tx_1 6 - 870086 870427 . 1 342 0 -chrVII 870086 870549 HC_gene_3709_tx_2 5 - 870086 870549 . 1 464 0 -chrVII 870086 870728 HC_gene_3709_tx_4 6 - 870086 870728 . 1 643 0 -chrVII 870086 871502 HC_gene_3709_tx_6 1 - 870086 871502 . 2 638,140 0,1277 -chrVII 870086 871502 HC_gene_3709_tx_7 16 - 870086 871502 . 1 1417 0 -chrVII 870086 871502 HC_gene_3709_tx_8 1 - 870086 871502 . 2 630,717 0,700 -chrVII 870086 871502 HC_gene_3709_tx_9 1 - 870086 871502 . 2 682,591 0,826 -chrVII 870157 870427 HC_gene_3709_tx_14 10 - 870157 870427 . 1 271 0 -chrVII 870157 870549 HC_gene_3709_tx_3 23 - 870157 870549 . 1 393 0 -chrVII 870157 870728 HC_gene_3709_tx_5 21 - 870157 870728 . 1 572 0 -chrVII 870157 871502 HC_gene_3709_tx_10 47 - 870157 871502 . 1 1346 0 -chrVII 870157 871502 HC_gene_3709_tx_11 1 - 870157 871502 . 2 905,197 0,1149 -chrVII 870157 871502 HC_gene_3709_tx_12 1 - 870157 871502 . 2 347,932 0,414 -chrVII 870157 871502 HC_gene_3709_tx_13 1 - 870157 871502 . 2 567,731 0,615 -chrVII 871807 872800 LC_gene_3275_tx_1 1 + 871807 872800 . 1 994 0 -chrVII 871894 874551 MC_gene_3710_tx_1 1 - 871894 874551 . 1 2658 0 -chrVII 874673 875149 HC_gene_3711_tx_1 2 - 874673 875149 . 1 477 0 -chrVII 875317 875714 HC_gene_3276_tx_1 5 + 875317 875714 . 1 398 0 -chrVII 875317 876264 HC_gene_3276_tx_2 6 + 875317 876264 . 1 948 0 -chrVII 875493 876255 LC_gene_3712_tx_1 1 - 875493 876255 . 1 763 0 -chrVII 876547 876935 HC_gene_3713_tx_1 26 - 876547 876935 . 1 389 0 -chrVII 876547 877007 HC_gene_3713_tx_2 60 - 876547 877007 . 1 461 0 -chrVII 876547 877106 HC_gene_3713_tx_3 38 - 876547 877106 . 1 560 0 -chrVII 876547 877245 HC_gene_3713_tx_4 85 - 876547 877245 . 1 699 0 -chrVII 876547 877355 HC_gene_3713_tx_5 13 - 876547 877355 . 1 809 0 -chrVII 876547 877502 HC_gene_3713_tx_6 1 - 876547 877502 . 2 617,267 0,689 -chrVII 876547 877528 HC_gene_3713_tx_7 57 - 876547 877528 . 1 982 0 -chrVII 876547 877955 HC_gene_3713_tx_14 29 - 876547 877955 . 1 1409 0 -chrVII 876547 877955 HC_gene_3713_tx_15 1 - 876547 877955 . 2 369,645 0,764 -chrVII 876547 878134 HC_gene_3713_tx_16 18 - 876547 878134 . 1 1588 0 -chrVII 876547 878134 HC_gene_3713_tx_17 1 - 876547 878134 . 2 273,837 0,751 -chrVII 876547 878134 HC_gene_3713_tx_18 1 - 876547 878134 . 2 1076,429 0,1159 -chrVII 876547 878271 HC_gene_3713_tx_19 142 - 876547 878271 . 1 1725 0 -chrVII 876547 878271 HC_gene_3713_tx_20 1 - 876547 878271 . 2 642,1010 0,715 -chrVII 876547 878271 HC_gene_3713_tx_21 1 - 876547 878271 . 2 840,578 0,1147 -chrVII 876547 878271 HC_gene_3713_tx_22 1 - 876547 878271 . 2 1072,542 0,1183 -chrVII 876547 878271 HC_gene_3713_tx_23 1 - 876547 878271 . 3 487,200,524 0,910,1201 -chrVII 876547 878271 HC_gene_3713_tx_24 1 - 876547 878271 . 2 1509,94 0,1631 -chrVII 876547 878271 HC_gene_3713_tx_25 1 - 876547 878271 . 2 1500,158 0,1567 -chrVII 876547 878271 HC_gene_3713_tx_26 1 - 876547 878271 . 2 1112,453 0,1272 -chrVII 876547 878271 HC_gene_3713_tx_27 1 - 876547 878271 . 2 555,1068 0,657 -chrVII 876606 876935 HC_gene_3713_tx_8 1 - 876606 876935 . 1 330 0 -chrVII 876606 877007 HC_gene_3713_tx_9 6 - 876606 877007 . 1 402 0 -chrVII 876606 877106 HC_gene_3713_tx_10 1 - 876606 877106 . 1 501 0 -chrVII 876606 877245 HC_gene_3713_tx_11 12 - 876606 877245 . 1 640 0 -chrVII 876606 877355 HC_gene_3713_tx_12 2 - 876606 877355 . 1 750 0 -chrVII 876606 877528 HC_gene_3713_tx_13 4 - 876606 877528 . 1 923 0 -chrVII 876606 877955 HC_gene_3713_tx_28 4 - 876606 877955 . 1 1350 0 -chrVII 876606 878134 HC_gene_3713_tx_29 1 - 876606 878134 . 1 1529 0 -chrVII 876606 878197 HC_gene_3713_tx_30 1 - 876606 878197 . 2 583,954 0,638 -chrVII 876606 878271 HC_gene_3713_tx_31 21 - 876606 878271 . 1 1666 0 -chrVII 876606 878271 HC_gene_3713_tx_32 1 - 876606 878271 . 2 676,437 0,1229 -chrVII 876606 878271 HC_gene_3713_tx_33 1 - 876606 878271 . 2 1450,128 0,1538 -chrVII 878933 879442 HC_gene_3277_tx_1 2 + 878933 879442 . 1 510 0 -chrVII 879460 879658 LC_gene_3278_tx_1 1 + 879460 879658 . 1 199 0 -chrVII 879562 879912 HC_gene_3714_tx_1 10 - 879562 879912 . 1 351 0 -chrVII 879741 882417 HC_gene_3279_tx_1 1 + 879741 882417 . 1 2677 0 -chrVII 880282 882324 HC_gene_3280_tx_1 2 + 880282 882324 . 1 2043 0 -chrVII 880282 882327 HC_gene_3280_tx_2 1 + 880282 882327 . 1 2046 0 -chrVII 880282 882335 HC_gene_3280_tx_3 3 + 880282 882335 . 1 2054 0 -chrVII 880282 882351 HC_gene_3280_tx_4 3 + 880282 882351 . 1 2070 0 -chrVII 880282 882354 HC_gene_3280_tx_5 1 + 880282 882354 . 1 2073 0 -chrVII 880282 882366 HC_gene_3280_tx_6 1 + 880282 882366 . 1 2085 0 -chrVII 880282 882385 HC_gene_3280_tx_7 4 + 880282 882385 . 1 2104 0 -chrVII 880282 882386 HC_gene_3280_tx_8 5 + 880282 882386 . 1 2105 0 -chrVII 880282 882386 HC_gene_3280_tx_9 1 + 880282 882386 . 2 868,1196 0,909 -chrVII 880282 882388 HC_gene_3280_tx_10 2 + 880282 882388 . 1 2107 0 -chrVII 880282 882393 HC_gene_3280_tx_11 1 + 880282 882393 . 1 2112 0 -chrVII 880282 882394 HC_gene_3280_tx_12 1 + 880282 882394 . 1 2113 0 -chrVII 880282 882395 HC_gene_3280_tx_13 2 + 880282 882395 . 1 2114 0 -chrVII 880282 882396 HC_gene_3280_tx_14 1 + 880282 882396 . 1 2115 0 -chrVII 880282 882397 HC_gene_3280_tx_15 2 + 880282 882397 . 1 2116 0 -chrVII 880282 882399 HC_gene_3280_tx_16 1 + 880282 882399 . 1 2118 0 -chrVII 880282 882401 HC_gene_3280_tx_17 2 + 880282 882401 . 1 2120 0 -chrVII 880282 882408 HC_gene_3280_tx_18 1 + 880282 882408 . 1 2127 0 -chrVII 880282 882409 HC_gene_3280_tx_19 4 + 880282 882409 . 1 2128 0 -chrVII 880282 882410 HC_gene_3280_tx_20 2 + 880282 882410 . 1 2129 0 -chrVII 880282 882422 HC_gene_3280_tx_21 1 + 880282 882422 . 1 2141 0 -chrVII 880282 882423 HC_gene_3280_tx_22 1 + 880282 882423 . 1 2142 0 -chrVII 880282 882433 HC_gene_3280_tx_23 1 + 880282 882433 . 1 2152 0 -chrVII 880282 882435 HC_gene_3280_tx_24 1 + 880282 882435 . 1 2154 0 -chrVII 880282 882439 HC_gene_3280_tx_25 1 + 880282 882439 . 1 2158 0 -chrVII 880282 882440 HC_gene_3280_tx_26 4 + 880282 882440 . 1 2159 0 -chrVII 880282 882446 HC_gene_3280_tx_27 1 + 880282 882446 . 1 2165 0 -chrVII 880282 882450 HC_gene_3280_tx_28 1 + 880282 882450 . 1 2169 0 -chrVII 880282 882451 HC_gene_3280_tx_29 2 + 880282 882451 . 1 2170 0 -chrVII 880282 882459 HC_gene_3280_tx_30 1 + 880282 882459 . 1 2178 0 -chrVII 880282 882463 HC_gene_3280_tx_31 2 + 880282 882463 . 1 2182 0 -chrVII 880282 882477 HC_gene_3280_tx_32 1 + 880282 882477 . 1 2196 0 -chrVII 880282 882481 HC_gene_3280_tx_33 1 + 880282 882481 . 1 2200 0 -chrVII 880282 882490 HC_gene_3280_tx_34 1 + 880282 882490 . 1 2209 0 -chrVII 880282 882491 HC_gene_3280_tx_35 1 + 880282 882491 . 1 2210 0 -chrVII 880282 882493 HC_gene_3280_tx_36 1 + 880282 882493 . 1 2212 0 -chrVII 880282 882494 HC_gene_3280_tx_37 1 + 880282 882494 . 1 2213 0 -chrVII 880282 882497 HC_gene_3280_tx_38 1 + 880282 882497 . 1 2216 0 -chrVII 880282 882498 HC_gene_3280_tx_39 1 + 880282 882498 . 1 2217 0 -chrVII 880282 882499 HC_gene_3280_tx_40 1 + 880282 882499 . 1 2218 0 -chrVII 880282 882500 HC_gene_3280_tx_41 2 + 880282 882500 . 1 2219 0 -chrVII 880282 882502 HC_gene_3280_tx_42 2 + 880282 882502 . 1 2221 0 -chrVII 880282 882504 HC_gene_3280_tx_43 1 + 880282 882504 . 1 2223 0 -chrVII 880282 882508 HC_gene_3280_tx_44 1 + 880282 882508 . 1 2227 0 -chrVII 880282 882569 HC_gene_3280_tx_45 3 + 880282 882569 . 1 2288 0 -chrVII 880479 882324 HC_gene_3280_tx_46 1 + 880479 882324 . 1 1846 0 -chrVII 880479 882399 HC_gene_3280_tx_47 1 + 880479 882399 . 1 1921 0 -chrVII 880479 882434 HC_gene_3280_tx_48 1 + 880479 882434 . 1 1956 0 -chrVII 880479 882569 HC_gene_3280_tx_49 1 + 880479 882569 . 1 2091 0 -chrVII 880723 882380 HC_gene_3280_tx_50 1 + 880723 882380 . 1 1658 0 -chrVII 880723 882385 HC_gene_3280_tx_51 2 + 880723 882385 . 1 1663 0 -chrVII 880723 882394 HC_gene_3280_tx_52 1 + 880723 882394 . 1 1672 0 -chrVII 880723 882428 HC_gene_3280_tx_53 1 + 880723 882428 . 1 1706 0 -chrVII 880723 882437 HC_gene_3280_tx_54 1 + 880723 882437 . 1 1715 0 -chrVII 880723 882446 HC_gene_3280_tx_55 1 + 880723 882446 . 1 1724 0 -chrVII 880723 882454 HC_gene_3280_tx_56 1 + 880723 882454 . 2 568,1094 0,638 -chrVII 880723 882455 HC_gene_3280_tx_57 1 + 880723 882455 . 1 1733 0 -chrVII 880723 882466 HC_gene_3280_tx_58 1 + 880723 882466 . 1 1744 0 -chrVII 880723 882480 HC_gene_3280_tx_59 1 + 880723 882480 . 1 1758 0 -chrVII 881230 882367 HC_gene_3280_tx_60 1 + 881230 882367 . 1 1138 0 -chrVII 881230 882374 HC_gene_3280_tx_61 1 + 881230 882374 . 1 1145 0 -chrVII 881230 882396 HC_gene_3280_tx_62 1 + 881230 882396 . 1 1167 0 -chrVII 881230 882440 HC_gene_3280_tx_63 1 + 881230 882440 . 1 1211 0 -chrVII 881230 882463 HC_gene_3280_tx_64 1 + 881230 882463 . 1 1234 0 -chrVII 881230 882468 HC_gene_3280_tx_65 1 + 881230 882468 . 1 1239 0 -chrVII 881230 882493 HC_gene_3280_tx_66 1 + 881230 882493 . 1 1264 0 -chrVII 881230 882507 HC_gene_3280_tx_67 1 + 881230 882507 . 1 1278 0 -chrVII 881923 882324 HC_gene_3280_tx_68 1 + 881923 882324 . 1 402 0 -chrVII 881923 882351 HC_gene_3280_tx_69 1 + 881923 882351 . 1 429 0 -chrVII 881923 882359 HC_gene_3280_tx_70 1 + 881923 882359 . 1 437 0 -chrVII 881923 882367 HC_gene_3280_tx_71 1 + 881923 882367 . 1 445 0 -chrVII 881923 882374 HC_gene_3280_tx_72 1 + 881923 882374 . 1 452 0 -chrVII 881923 882385 HC_gene_3280_tx_73 1 + 881923 882385 . 1 463 0 -chrVII 881923 882386 HC_gene_3280_tx_74 1 + 881923 882386 . 1 464 0 -chrVII 881923 882395 HC_gene_3280_tx_75 1 + 881923 882395 . 1 473 0 -chrVII 881923 882396 HC_gene_3280_tx_76 1 + 881923 882396 . 1 474 0 -chrVII 881923 882437 HC_gene_3280_tx_77 1 + 881923 882437 . 1 515 0 -chrVII 881923 882440 HC_gene_3280_tx_78 1 + 881923 882440 . 1 518 0 -chrVII 881923 882463 HC_gene_3280_tx_79 3 + 881923 882463 . 1 541 0 -chrVII 881923 882569 HC_gene_3280_tx_80 1 + 881923 882569 . 1 647 0 -chrVII 881986 882381 HC_gene_3280_tx_81 1 + 881986 882381 . 1 396 0 -chrVII 881986 882463 HC_gene_3280_tx_82 1 + 881986 882463 . 1 478 0 -chrVII 881986 882569 HC_gene_3280_tx_83 1 + 881986 882569 . 1 584 0 -chrVII 882713 883002 HC_gene_3715_tx_1 1566 - 882713 883002 . 1 290 0 -chrVII 882713 883168 HC_gene_3715_tx_2 5851 - 882713 883168 . 1 456 0 -chrVII 882713 883461 HC_gene_3715_tx_3 1759 - 882713 883461 . 1 749 0 -chrVII 882713 883849 HC_gene_3715_tx_4 20798 - 882713 883849 . 1 1137 0 -chrVII 884387 885131 HC_gene_3716_tx_1 17 - 884387 885131 . 1 745 0 -chrVII 884387 885375 HC_gene_3716_tx_2 4 - 884387 885375 . 1 989 0 -chrVII 884387 885599 HC_gene_3716_tx_3 15 - 884387 885599 . 1 1213 0 -chrVII 884387 885831 HC_gene_3716_tx_4 76 - 884387 885831 . 1 1445 0 -chrVII 884387 885831 HC_gene_3716_tx_5 1 - 884387 885831 . 2 1044,214 0,1231 -chrVII 884387 885831 HC_gene_3716_tx_6 1 - 884387 885831 . 2 510,871 0,574 -chrVII 884387 885831 HC_gene_3716_tx_7 1 - 884387 885831 . 2 799,585 0,860 -chrVII 884475 885599 HC_gene_3716_tx_8 1 - 884475 885599 . 1 1125 0 -chrVII 884475 885831 HC_gene_3716_tx_9 3 - 884475 885831 . 1 1357 0 -chrVII 885968 887545 HC_gene_3717_tx_1 2 - 885968 887545 . 1 1578 0 -chrVII 885968 887847 HC_gene_3717_tx_2 9 - 885968 887847 . 1 1880 0 -chrVII 886052 888428 LC_gene_3281_tx_1 1 + 886052 888428 . 1 2377 0 -chrVII 888761 889700 HC_gene_3282_tx_1 71 + 888761 889700 . 1 940 0 -chrVII 888761 889700 HC_gene_3282_tx_2 1 + 888761 889700 . 2 254,640 0,300 -chrVII 888761 889784 HC_gene_3282_tx_3 8 + 888761 889784 . 1 1024 0 -chrVII 888761 890034 HC_gene_3282_tx_4 4 + 888761 890034 . 1 1274 0 -chrVII 888914 889700 HC_gene_3282_tx_5 3 + 888914 889700 . 1 787 0 -chrVII 888914 890034 HC_gene_3282_tx_6 1 + 888914 890034 . 1 1121 0 -chrVII 888993 889700 HC_gene_3282_tx_7 7 + 888993 889700 . 1 708 0 -chrVII 889620 890629 HC_gene_3718_tx_1 1 - 889620 890629 . 1 1010 0 -chrVII 889620 891420 HC_gene_3718_tx_2 7 - 889620 891420 . 1 1801 0 -chrVII 889620 892227 HC_gene_3718_tx_3 13 - 889620 892227 . 1 2608 0 -chrVII 889620 892227 HC_gene_3718_tx_4 1 - 889620 892227 . 2 1978,561 0,2047 -chrVII 892430 894156 HC_gene_3719_tx_1 2 - 892430 894156 . 1 1727 0 -chrVII 892430 894262 HC_gene_3719_tx_2 3 - 892430 894262 . 1 1833 0 -chrVII 892430 894338 HC_gene_3719_tx_3 9 - 892430 894338 . 1 1909 0 -chrVII 892483 893536 MC_gene_3283_tx_1 1 + 892483 893536 . 1 1054 0 -chrVII 894209 894338 HC_gene_3719_tx_4 3 - 894209 894338 . 1 130 0 -chrVII 894651 897244 HC_gene_3284_tx_1 13 + 894651 897244 . 1 2594 0 -chrVII 894651 897244 HC_gene_3284_tx_2 1 + 894651 897244 . 2 1355,1158 0,1436 -chrVII 894651 897244 HC_gene_3284_tx_3 1 + 894651 897244 . 2 318,1982 0,612 -chrVII 897460 899730 HC_gene_3285_tx_1 1 + 897460 899730 . 1 2271 0 -chrVII 897460 899742 HC_gene_3285_tx_2 1 + 897460 899742 . 1 2283 0 -chrVII 897460 899810 HC_gene_3285_tx_3 6 + 897460 899810 . 1 2351 0 -chrVII 897460 899985 HC_gene_3285_tx_4 2 + 897460 899985 . 1 2526 0 -chrVII 897460 900100 HC_gene_3285_tx_5 3 + 897460 900100 . 1 2641 0 -chrVII 897460 900100 HC_gene_3285_tx_6 1 + 897460 900100 . 2 2291,285 0,2356 -chrVII 897679 898040 MC_gene_3720_tx_1 1 - 897679 898040 . 1 362 0 -chrVII 898515 899985 HC_gene_3285_tx_7 1 + 898515 899985 . 1 1471 0 -chrVII 899653 902329 HC_gene_3721_tx_1 2 - 899653 902329 . 1 2677 0 -chrVII 899653 902329 HC_gene_3721_tx_2 1 - 899653 902329 . 2 1276,1220 0,1457 -chrVII 899807 902329 HC_gene_3721_tx_3 33 - 899807 902329 . 1 2523 0 -chrVII 899807 902329 HC_gene_3721_tx_4 1 - 899807 902329 . 2 1692,726 0,1797 -chrVII 899807 902329 HC_gene_3721_tx_5 1 - 899807 902329 . 2 596,1832 0,691 -chrVII 902468 902843 HC_gene_3722_tx_1 6 - 902468 902843 . 1 376 0 -chrVII 902468 903135 HC_gene_3722_tx_2 26 - 902468 903135 . 1 668 0 -chrVII 902533 903606 HC_gene_3286_tx_1 2 + 902533 903606 . 1 1074 0 -chrVII 903325 903679 HC_gene_3723_tx_1 2 - 903325 903679 . 1 355 0 -chrVII 903326 903679 HC_gene_3723_tx_2 1 - 903326 903679 . 1 354 0 -chrVII 903339 904763 HC_gene_3724_tx_1 1 - 903339 904763 . 1 1425 0 -chrVII 903342 903679 HC_gene_3723_tx_3 1 - 903342 903679 . 1 338 0 -chrVII 903343 903679 HC_gene_3723_tx_4 2 - 903343 903679 . 1 337 0 -chrVII 903343 904763 HC_gene_3724_tx_2 4 - 903343 904763 . 1 1421 0 -chrVII 903344 903679 HC_gene_3723_tx_5 4 - 903344 903679 . 1 336 0 -chrVII 903344 904620 HC_gene_3724_tx_3 3 - 903344 904620 . 1 1277 0 -chrVII 903344 904763 HC_gene_3724_tx_4 20 - 903344 904763 . 1 1420 0 -chrVII 903344 904763 HC_gene_3724_tx_5 1 - 903344 904763 . 2 589,793 0,627 -chrVII 904926 905184 HC_gene_3725_tx_1 8 - 904926 905184 . 1 259 0 -chrVII 904926 905310 HC_gene_3725_tx_2 38 - 904926 905310 . 1 385 0 -chrVII 904926 905450 HC_gene_3725_tx_3 4 - 904926 905450 . 1 525 0 -chrVII 905073 905874 HC_gene_3287_tx_1 3 + 905073 905874 . 1 802 0 -chrVII 905191 905874 HC_gene_3287_tx_2 45 + 905191 905874 . 1 684 0 -chrVII 905231 905874 HC_gene_3287_tx_3 1 + 905231 905874 . 1 644 0 -chrVII 907098 908880 HC_gene_3288_tx_1 14 + 907098 908880 . 1 1783 0 -chrVII 907098 908880 HC_gene_3288_tx_2 1 + 907098 908880 . 2 303,1256 0,527 -chrVII 907298 908880 HC_gene_3288_tx_3 57 + 907298 908880 . 1 1583 0 -chrVII 907298 908880 HC_gene_3288_tx_4 1 + 907298 908880 . 2 516,1009 0,574 -chrVII 908165 908777 MC_gene_3726_tx_1 1 - 908165 908777 . 1 613 0 -chrVII 908344 908880 HC_gene_3288_tx_5 67 + 908344 908880 . 1 537 0 -chrVII 908804 909171 MC_gene_3727_tx_1 1 - 908804 909171 . 1 368 0 -chrVII 909037 910234 MC_gene_3728_tx_1 1 - 909037 910234 . 1 1198 0 -chrVII 909086 910108 HC_gene_3289_tx_1 11 + 909086 910108 . 1 1023 0 -chrVII 909086 910214 HC_gene_3289_tx_2 35 + 909086 910214 . 1 1129 0 -chrVII 909086 910214 HC_gene_3289_tx_3 1 + 909086 910214 . 2 219,862 0,267 -chrVII 909492 910108 HC_gene_3289_tx_4 1 + 909492 910108 . 1 617 0 -chrVII 909492 910214 HC_gene_3289_tx_5 7 + 909492 910214 . 1 723 0 -chrVII 909631 910108 HC_gene_3289_tx_6 5 + 909631 910108 . 1 478 0 -chrVII 909631 910214 HC_gene_3289_tx_7 5 + 909631 910214 . 1 584 0 -chrVII 909631 910214 HC_gene_3289_tx_8 1 + 909631 910214 . 2 429,66 0,518 -chrVII 910410 910825 HC_gene_3290_tx_1 116 + 910410 910825 . 1 416 0 -chrVII 910548 910825 HC_gene_3290_tx_2 5 + 910548 910825 . 1 278 0 -chrVII 910731 911170 HC_gene_3729_tx_1 36 - 910731 911170 . 1 440 0 -chrVII 910731 911272 HC_gene_3729_tx_2 2 - 910731 911272 . 1 542 0 -chrVII 910731 911336 HC_gene_3729_tx_3 19 - 910731 911336 . 1 606 0 -chrVII 910731 911634 HC_gene_3729_tx_4 1 - 910731 911634 . 2 410,372 0,532 -chrVII 910731 911659 HC_gene_3729_tx_5 133 - 910731 911659 . 1 929 0 -chrVII 910731 911659 HC_gene_3729_tx_6 1 - 910731 911659 . 2 493,268 0,661 -chrVII 910731 911659 HC_gene_3729_tx_7 1 - 910731 911659 . 2 779,53 0,876 -chrVII 910731 911659 HC_gene_3729_tx_8 1 - 910731 911659 . 2 471,370 0,559 -chrVII 911837 912862 HC_gene_3291_tx_1 151 + 911837 912862 . 1 1026 0 -chrVII 912829 913281 HC_gene_3730_tx_1 2056 - 912829 913281 . 1 453 0 -chrVII 913301 913861 HC_gene_3731_tx_1 7 - 913301 913861 . 1 561 0 -chrVII 913301 914366 HC_gene_3731_tx_19 1 - 913301 914366 . 1 1066 0 -chrVII 913301 914836 HC_gene_3731_tx_28 1 - 913301 914836 . 1 1536 0 -chrVII 913301 914849 HC_gene_3731_tx_29 7 - 913301 914849 . 1 1549 0 -chrVII 913376 913861 HC_gene_3731_tx_2 1 - 913376 913861 . 1 486 0 -chrVII 913381 914849 HC_gene_3731_tx_30 1 - 913381 914849 . 1 1469 0 -chrVII 913382 913861 HC_gene_3731_tx_3 1 - 913382 913861 . 1 480 0 -chrVII 913386 914849 HC_gene_3731_tx_31 1 - 913386 914849 . 1 1464 0 -chrVII 913388 914849 HC_gene_3731_tx_32 1 - 913388 914849 . 1 1462 0 -chrVII 913390 913861 HC_gene_3731_tx_4 1 - 913390 913861 . 1 472 0 -chrVII 913390 914849 HC_gene_3731_tx_33 2 - 913390 914849 . 1 1460 0 -chrVII 913402 914849 HC_gene_3731_tx_34 1 - 913402 914849 . 1 1448 0 -chrVII 913406 914366 HC_gene_3731_tx_20 1 - 913406 914366 . 1 961 0 -chrVII 913406 914451 HC_gene_3731_tx_21 1 - 913406 914451 . 1 1046 0 -chrVII 913406 914849 HC_gene_3731_tx_35 9 - 913406 914849 . 1 1444 0 -chrVII 913410 913861 HC_gene_3731_tx_5 3 - 913410 913861 . 1 452 0 -chrVII 913410 914451 HC_gene_3731_tx_22 2 - 913410 914451 . 1 1042 0 -chrVII 913410 914849 HC_gene_3731_tx_36 1 - 913410 914849 . 1 1440 0 -chrVII 913411 914366 HC_gene_3731_tx_23 1 - 913411 914366 . 1 956 0 -chrVII 913411 914849 HC_gene_3731_tx_37 1 - 913411 914849 . 1 1439 0 -chrVII 913412 913861 HC_gene_3731_tx_6 1 - 913412 913861 . 1 450 0 -chrVII 913414 913861 HC_gene_3731_tx_7 1 - 913414 913861 . 1 448 0 -chrVII 913414 914849 HC_gene_3731_tx_38 1 - 913414 914849 . 1 1436 0 -chrVII 913415 913861 HC_gene_3731_tx_8 7 - 913415 913861 . 1 447 0 -chrVII 913415 914849 HC_gene_3731_tx_39 17 - 913415 914849 . 1 1435 0 -chrVII 913416 913861 HC_gene_3731_tx_9 1 - 913416 913861 . 1 446 0 -chrVII 913416 914849 HC_gene_3731_tx_40 1 - 913416 914849 . 1 1434 0 -chrVII 913417 914849 HC_gene_3731_tx_41 1 - 913417 914849 . 1 1433 0 -chrVII 913418 913861 HC_gene_3731_tx_10 2 - 913418 913861 . 1 444 0 -chrVII 913418 914849 HC_gene_3731_tx_42 5 - 913418 914849 . 1 1432 0 -chrVII 913419 914366 HC_gene_3731_tx_24 1 - 913419 914366 . 1 948 0 -chrVII 913420 913861 HC_gene_3731_tx_11 1 - 913420 913861 . 1 442 0 -chrVII 913420 914451 HC_gene_3731_tx_25 1 - 913420 914451 . 1 1032 0 -chrVII 913420 914849 HC_gene_3731_tx_43 4 - 913420 914849 . 1 1430 0 -chrVII 913422 914366 HC_gene_3731_tx_26 1 - 913422 914366 . 1 945 0 -chrVII 913423 914849 HC_gene_3731_tx_44 1 - 913423 914849 . 1 1427 0 -chrVII 913424 913861 HC_gene_3731_tx_12 1 - 913424 913861 . 1 438 0 -chrVII 913424 914849 HC_gene_3731_tx_45 2 - 913424 914849 . 1 1426 0 -chrVII 913427 913861 HC_gene_3731_tx_13 1 - 913427 913861 . 1 435 0 -chrVII 913427 914849 HC_gene_3731_tx_46 1 - 913427 914849 . 1 1423 0 -chrVII 913428 913861 HC_gene_3731_tx_14 2 - 913428 913861 . 1 434 0 -chrVII 913428 914849 HC_gene_3731_tx_47 2 - 913428 914849 . 1 1422 0 -chrVII 913429 914849 HC_gene_3731_tx_48 1 - 913429 914849 . 1 1421 0 -chrVII 913430 914849 HC_gene_3731_tx_49 1 - 913430 914849 . 1 1420 0 -chrVII 913431 914849 HC_gene_3731_tx_50 1 - 913431 914849 . 1 1419 0 -chrVII 913433 914849 HC_gene_3731_tx_51 1 - 913433 914849 . 1 1417 0 -chrVII 913437 914849 HC_gene_3731_tx_52 3 - 913437 914849 . 1 1413 0 -chrVII 913444 913861 HC_gene_3731_tx_15 1 - 913444 913861 . 1 418 0 -chrVII 913444 914451 HC_gene_3731_tx_27 1 - 913444 914451 . 1 1008 0 -chrVII 913446 913861 HC_gene_3731_tx_16 1 - 913446 913861 . 1 416 0 -chrVII 913446 914849 HC_gene_3731_tx_53 1 - 913446 914849 . 1 1404 0 -chrVII 913447 913861 HC_gene_3731_tx_17 1 - 913447 913861 . 1 415 0 -chrVII 913447 914849 HC_gene_3731_tx_54 1 - 913447 914849 . 1 1403 0 -chrVII 913448 914849 HC_gene_3731_tx_55 2 - 913448 914849 . 1 1402 0 -chrVII 913449 914849 HC_gene_3731_tx_56 2 - 913449 914849 . 1 1401 0 -chrVII 913450 913861 HC_gene_3731_tx_18 1 - 913450 913861 . 1 412 0 -chrVII 913450 914849 HC_gene_3731_tx_57 1 - 913450 914849 . 1 1400 0 -chrVII 914112 914814 LC_gene_3292_tx_1 1 + 914112 914814 . 1 703 0 -chrVII 915181 916901 HC_gene_3293_tx_1 80 + 915181 916901 . 1 1721 0 -chrVII 915181 916901 HC_gene_3293_tx_2 1 + 915181 916901 . 2 921,671 0,1050 -chrVII 915181 916901 HC_gene_3293_tx_3 1 + 915181 916901 . 2 962,715 0,1006 -chrVII 915181 916901 HC_gene_3293_tx_4 1 + 915181 916901 . 2 964,645 0,1076 -chrVII 915501 916901 HC_gene_3293_tx_5 7 + 915501 916901 . 1 1401 0 -chrVII 915852 916901 HC_gene_3293_tx_6 12 + 915852 916901 . 1 1050 0 -chrVII 917035 918498 HC_gene_3294_tx_1 1 + 917035 918498 . 1 1464 0 -chrVII 917087 919550 HC_gene_3295_tx_1 1 + 917087 919550 . 1 2464 0 -chrVII 918400 919499 HC_gene_3732_tx_1 1 - 918400 919499 . 1 1100 0 -chrVII 920553 921093 HC_gene_3296_tx_1 1 + 920553 921093 . 1 541 0 -chrVII 920553 921842 HC_gene_3296_tx_2 6 + 920553 921842 . 2 112,723 0,567 -chrVII 920553 921844 HC_gene_3296_tx_3 17 + 920553 921844 . 2 112,725 0,567 -chrVII 920553 921845 HC_gene_3296_tx_4 32 + 920553 921845 . 2 112,726 0,567 -chrVII 920553 921845 HC_gene_3296_tx_5 1 + 920553 921845 . 2 112,703 0,590 -chrVII 920553 921845 HC_gene_3296_tx_6 1 + 920553 921845 . 2 112,716 0,577 -chrVII 920553 921846 HC_gene_3296_tx_7 40 + 920553 921846 . 2 112,727 0,567 -chrVII 920553 921846 HC_gene_3296_tx_8 1 + 920553 921846 . 3 112,192,323 0,662,971 -chrVII 920553 921846 HC_gene_3296_tx_9 1 + 920553 921846 . 2 95,727 0,567 -chrVII 920553 921847 HC_gene_3296_tx_10 12 + 920553 921847 . 2 112,728 0,567 -chrVII 920553 921848 HC_gene_3296_tx_11 53 + 920553 921848 . 2 112,729 0,567 -chrVII 920553 921848 HC_gene_3296_tx_12 1 + 920553 921848 . 2 112,719 0,577 -chrVII 920553 921849 HC_gene_3296_tx_13 3 + 920553 921849 . 2 112,730 0,567 -chrVII 920553 921850 HC_gene_3296_tx_14 4 + 920553 921850 . 2 112,731 0,567 -chrVII 920553 921850 HC_gene_3296_tx_15 1 + 920553 921850 . 1 1298 0 -chrVII 920553 921852 HC_gene_3296_tx_16 10 + 920553 921852 . 2 112,733 0,567 -chrVII 920553 921853 HC_gene_3296_tx_17 10 + 920553 921853 . 2 112,734 0,567 -chrVII 920553 921854 HC_gene_3296_tx_18 24 + 920553 921854 . 2 112,735 0,567 -chrVII 920553 921855 HC_gene_3296_tx_19 62 + 920553 921855 . 2 112,736 0,567 -chrVII 920553 921855 HC_gene_3296_tx_20 1 + 920553 921855 . 1 1303 0 -chrVII 920553 921856 HC_gene_3296_tx_21 45 + 920553 921856 . 2 112,737 0,567 -chrVII 920553 921857 HC_gene_3296_tx_22 5 + 920553 921857 . 2 112,738 0,567 -chrVII 920553 921858 HC_gene_3296_tx_23 2 + 920553 921858 . 2 112,739 0,567 -chrVII 920553 921861 HC_gene_3296_tx_24 2 + 920553 921861 . 2 112,742 0,567 -chrVII 920553 921862 HC_gene_3296_tx_25 1 + 920553 921862 . 2 112,743 0,567 -chrVII 920553 921863 HC_gene_3296_tx_26 1 + 920553 921863 . 2 112,744 0,567 -chrVII 920553 921864 HC_gene_3296_tx_27 103 + 920553 921864 . 2 112,745 0,567 -chrVII 920553 921864 HC_gene_3296_tx_28 1 + 920553 921864 . 2 112,727 0,585 -chrVII 920553 921864 HC_gene_3296_tx_29 1 + 920553 921864 . 3 112,208,474 0,567,838 -chrVII 920553 921865 HC_gene_3296_tx_30 30 + 920553 921865 . 2 112,746 0,567 -chrVII 920553 921866 HC_gene_3296_tx_31 30 + 920553 921866 . 2 112,747 0,567 -chrVII 920553 921867 HC_gene_3296_tx_32 6 + 920553 921867 . 2 112,748 0,567 -chrVII 920553 921868 HC_gene_3296_tx_33 15 + 920553 921868 . 2 112,749 0,567 -chrVII 920553 921870 HC_gene_3296_tx_34 1 + 920553 921870 . 2 112,751 0,567 -chrVII 920553 921871 HC_gene_3296_tx_35 1 + 920553 921871 . 2 112,752 0,567 -chrVII 920553 921874 HC_gene_3296_tx_36 2 + 920553 921874 . 2 112,755 0,567 -chrVII 920553 921877 HC_gene_3296_tx_37 2 + 920553 921877 . 2 112,758 0,567 -chrVII 920553 921877 HC_gene_3296_tx_38 1 + 920553 921877 . 2 112,721 0,604 -chrVII 920553 921878 HC_gene_3296_tx_39 9 + 920553 921878 . 2 112,759 0,567 -chrVII 920553 921881 HC_gene_3296_tx_40 7 + 920553 921881 . 2 112,762 0,567 -chrVII 920553 921882 HC_gene_3296_tx_41 1 + 920553 921882 . 2 98,757 0,573 -chrVII 920553 921882 HC_gene_3296_tx_42 11 + 920553 921882 . 2 112,763 0,567 -chrVII 920553 921883 HC_gene_3296_tx_43 2 + 920553 921883 . 2 112,764 0,567 -chrVII 920553 921885 HC_gene_3296_tx_44 3 + 920553 921885 . 2 112,766 0,567 -chrVII 920553 921887 HC_gene_3296_tx_45 2 + 920553 921887 . 2 112,768 0,567 -chrVII 920553 921888 HC_gene_3296_tx_46 3 + 920553 921888 . 2 112,769 0,567 -chrVII 920553 921888 HC_gene_3296_tx_47 1 + 920553 921888 . 3 112,665,45 0,567,1291 -chrVII 920553 921890 HC_gene_3296_tx_48 14 + 920553 921890 . 2 112,771 0,567 -chrVII 920553 921890 HC_gene_3296_tx_49 1 + 920553 921890 . 3 112,625,47 0,567,1291 -chrVII 920553 921890 HC_gene_3296_tx_50 1 + 920553 921890 . 3 112,662,39 0,567,1299 -chrVII 920553 921890 HC_gene_3296_tx_51 1 + 920553 921890 . 3 112,657,47 0,567,1291 -chrVII 920553 921891 HC_gene_3296_tx_52 42 + 920553 921891 . 2 112,772 0,567 -chrVII 920553 921892 HC_gene_3296_tx_53 48 + 920553 921892 . 2 112,773 0,567 -chrVII 920553 921892 HC_gene_3296_tx_54 1 + 920553 921892 . 2 77,760 0,580 -chrVII 920553 921892 HC_gene_3296_tx_55 1 + 920553 921892 . 3 112,662,49 0,567,1291 -chrVII 920553 921893 HC_gene_3296_tx_56 9 + 920553 921893 . 2 112,774 0,567 -chrVII 920553 921893 HC_gene_3296_tx_57 1 + 920553 921893 . 3 112,662,50 0,567,1291 -chrVII 920553 921894 HC_gene_3296_tx_58 4 + 920553 921894 . 2 112,775 0,567 -chrVII 920553 921895 HC_gene_3296_tx_59 1 + 920553 921895 . 2 112,776 0,567 -chrVII 920553 921896 HC_gene_3296_tx_60 2 + 920553 921896 . 2 112,777 0,567 -chrVII 920553 921897 HC_gene_3296_tx_61 2 + 920553 921897 . 2 112,778 0,567 -chrVII 920553 921898 HC_gene_3296_tx_62 3 + 920553 921898 . 2 112,779 0,567 -chrVII 920553 921899 HC_gene_3296_tx_63 29 + 920553 921899 . 2 112,780 0,567 -chrVII 920553 921900 HC_gene_3296_tx_64 3 + 920553 921900 . 2 112,781 0,567 -chrVII 920553 921901 HC_gene_3296_tx_65 8 + 920553 921901 . 2 112,782 0,567 -chrVII 920553 921902 HC_gene_3296_tx_66 18 + 920553 921902 . 2 112,783 0,567 -chrVII 920553 921902 HC_gene_3296_tx_67 1 + 920553 921902 . 2 77,777 0,573 -chrVII 920553 921903 HC_gene_3296_tx_68 32 + 920553 921903 . 2 112,784 0,567 -chrVII 920553 921904 HC_gene_3296_tx_69 41 + 920553 921904 . 2 112,785 0,567 -chrVII 920553 921904 HC_gene_3296_tx_70 1 + 920553 921904 . 1 1352 0 -chrVII 920553 921905 HC_gene_3296_tx_71 2 + 920553 921905 . 2 112,786 0,567 -chrVII 920553 921906 HC_gene_3296_tx_72 5 + 920553 921906 . 2 112,787 0,567 -chrVII 920553 921907 HC_gene_3296_tx_73 3 + 920553 921907 . 2 112,788 0,567 -chrVII 920553 921908 HC_gene_3296_tx_74 2 + 920553 921908 . 2 112,789 0,567 -chrVII 920553 921909 HC_gene_3296_tx_75 6 + 920553 921909 . 2 112,790 0,567 -chrVII 920553 921910 HC_gene_3296_tx_76 20 + 920553 921910 . 2 112,791 0,567 -chrVII 920553 921910 HC_gene_3296_tx_77 1 + 920553 921910 . 2 57,546 0,812 -chrVII 920553 921910 HC_gene_3296_tx_78 1 + 920553 921910 . 2 95,804 0,554 -chrVII 920553 921910 HC_gene_3296_tx_79 1 + 920553 921910 . 1 1358 0 -chrVII 920553 921911 HC_gene_3296_tx_80 8 + 920553 921911 . 2 112,792 0,567 -chrVII 920553 921912 HC_gene_3296_tx_81 7 + 920553 921912 . 2 112,793 0,567 -chrVII 920553 921913 HC_gene_3296_tx_82 6 + 920553 921913 . 2 112,794 0,567 -chrVII 920553 921914 HC_gene_3296_tx_83 55 + 920553 921914 . 2 112,795 0,567 -chrVII 920553 921914 HC_gene_3296_tx_84 1 + 920553 921914 . 3 112,336,349 0,567,1013 -chrVII 920553 921914 HC_gene_3296_tx_85 1 + 920553 921914 . 2 106,795 0,567 -chrVII 920553 921915 HC_gene_3296_tx_86 11 + 920553 921915 . 2 112,796 0,567 -chrVII 920553 921916 HC_gene_3296_tx_87 12 + 920553 921916 . 2 112,797 0,567 -chrVII 920553 921916 HC_gene_3296_tx_88 1 + 920553 921916 . 2 112,779 0,585 -chrVII 920553 921916 HC_gene_3296_tx_89 1 + 920553 921916 . 1 1364 0 -chrVII 920553 921917 HC_gene_3296_tx_90 4 + 920553 921917 . 2 112,798 0,567 -chrVII 920553 921918 HC_gene_3296_tx_91 5 + 920553 921918 . 2 112,799 0,567 -chrVII 920553 921919 HC_gene_3296_tx_92 10 + 920553 921919 . 2 112,800 0,567 -chrVII 920553 921920 HC_gene_3296_tx_93 11 + 920553 921920 . 2 112,801 0,567 -chrVII 920553 921920 HC_gene_3296_tx_94 1 + 920553 921920 . 2 112,791 0,577 -chrVII 920553 921921 HC_gene_3296_tx_95 3 + 920553 921921 . 2 112,802 0,567 -chrVII 920553 921922 HC_gene_3296_tx_96 92 + 920553 921922 . 2 112,803 0,567 -chrVII 920553 921922 HC_gene_3296_tx_97 1 + 920553 921922 . 1 1370 0 -chrVII 920553 921923 HC_gene_3296_tx_98 1 + 920553 921923 . 1 1371 0 -chrVII 920553 921924 HC_gene_3296_tx_99 8 + 920553 921924 . 2 112,805 0,567 -chrVII 920553 921925 HC_gene_3296_tx_100 6 + 920553 921925 . 2 112,806 0,567 -chrVII 920553 921926 HC_gene_3296_tx_101 3 + 920553 921926 . 2 112,807 0,567 -chrVII 920553 921927 HC_gene_3296_tx_102 1 + 920553 921927 . 2 112,808 0,567 -chrVII 920553 921928 HC_gene_3296_tx_103 3 + 920553 921928 . 2 112,809 0,567 -chrVII 920553 921930 HC_gene_3296_tx_104 7 + 920553 921930 . 2 112,811 0,567 -chrVII 920553 921932 HC_gene_3296_tx_105 1 + 920553 921932 . 2 112,813 0,567 -chrVII 920553 921934 HC_gene_3296_tx_106 3 + 920553 921934 . 2 112,815 0,567 -chrVII 920553 921937 HC_gene_3296_tx_107 1 + 920553 921937 . 2 112,818 0,567 -chrVII 920553 921938 HC_gene_3296_tx_108 3 + 920553 921938 . 2 112,819 0,567 -chrVII 920553 921940 HC_gene_3296_tx_109 1 + 920553 921940 . 2 112,821 0,567 -chrVII 920553 921941 HC_gene_3296_tx_110 1 + 920553 921941 . 2 112,822 0,567 -chrVII 920553 921943 HC_gene_3296_tx_111 1 + 920553 921943 . 2 112,824 0,567 -chrVII 920553 921951 HC_gene_3296_tx_112 2 + 920553 921951 . 2 112,832 0,567 -chrVII 920553 921960 HC_gene_3296_tx_113 1 + 920553 921960 . 2 112,841 0,567 -chrVII 920553 921965 HC_gene_3296_tx_114 1 + 920553 921965 . 2 112,846 0,567 -chrVII 920553 921969 HC_gene_3296_tx_115 1 + 920553 921969 . 1 1417 0 -chrVII 920553 921971 HC_gene_3296_tx_116 1 + 920553 921971 . 2 112,852 0,567 -chrVII 920553 921976 HC_gene_3296_tx_117 1 + 920553 921976 . 2 112,857 0,567 -chrVII 920553 922056 HC_gene_3296_tx_118 3 + 920553 922056 . 2 112,937 0,567 -chrVII 921214 921892 HC_gene_3296_tx_119 1 + 921214 921892 . 2 69,520 0,159 -chrVII 921285 921842 HC_gene_3296_tx_120 2 + 921285 921842 . 1 558 0 -chrVII 921285 921843 HC_gene_3296_tx_121 1 + 921285 921843 . 1 559 0 -chrVII 921285 921844 HC_gene_3296_tx_122 3 + 921285 921844 . 1 560 0 -chrVII 921285 921845 HC_gene_3296_tx_123 16 + 921285 921845 . 1 561 0 -chrVII 921285 921846 HC_gene_3296_tx_124 8 + 921285 921846 . 1 562 0 -chrVII 921285 921847 HC_gene_3296_tx_125 8 + 921285 921847 . 1 563 0 -chrVII 921285 921847 HC_gene_3296_tx_126 1 + 921285 921847 . 2 472,43 0,520 -chrVII 921285 921848 HC_gene_3296_tx_127 21 + 921285 921848 . 1 564 0 -chrVII 921285 921849 HC_gene_3296_tx_128 2 + 921285 921849 . 1 565 0 -chrVII 921285 921850 HC_gene_3296_tx_129 4 + 921285 921850 . 1 566 0 -chrVII 921285 921852 HC_gene_3296_tx_130 1 + 921285 921852 . 1 568 0 -chrVII 921285 921853 HC_gene_3296_tx_131 3 + 921285 921853 . 1 569 0 -chrVII 921285 921854 HC_gene_3296_tx_132 11 + 921285 921854 . 1 570 0 -chrVII 921285 921855 HC_gene_3296_tx_133 18 + 921285 921855 . 1 571 0 -chrVII 921285 921856 HC_gene_3296_tx_134 18 + 921285 921856 . 1 572 0 -chrVII 921285 921857 HC_gene_3296_tx_135 1 + 921285 921857 . 1 573 0 -chrVII 921285 921862 HC_gene_3296_tx_136 3 + 921285 921862 . 1 578 0 -chrVII 921285 921864 HC_gene_3296_tx_137 47 + 921285 921864 . 1 580 0 -chrVII 921285 921865 HC_gene_3296_tx_138 10 + 921285 921865 . 1 581 0 -chrVII 921285 921866 HC_gene_3296_tx_139 15 + 921285 921866 . 1 582 0 -chrVII 921285 921867 HC_gene_3296_tx_140 1 + 921285 921867 . 1 583 0 -chrVII 921285 921868 HC_gene_3296_tx_141 6 + 921285 921868 . 1 584 0 -chrVII 921285 921870 HC_gene_3296_tx_142 1 + 921285 921870 . 1 586 0 -chrVII 921285 921871 HC_gene_3296_tx_143 1 + 921285 921871 . 1 587 0 -chrVII 921285 921876 HC_gene_3296_tx_144 1 + 921285 921876 . 1 592 0 -chrVII 921285 921877 HC_gene_3296_tx_145 3 + 921285 921877 . 1 593 0 -chrVII 921285 921878 HC_gene_3296_tx_146 5 + 921285 921878 . 1 594 0 -chrVII 921285 921880 HC_gene_3296_tx_147 1 + 921285 921880 . 1 596 0 -chrVII 921285 921881 HC_gene_3296_tx_148 3 + 921285 921881 . 1 597 0 -chrVII 921285 921882 HC_gene_3296_tx_149 3 + 921285 921882 . 1 598 0 -chrVII 921285 921883 HC_gene_3296_tx_150 4 + 921285 921883 . 1 599 0 -chrVII 921285 921886 HC_gene_3296_tx_151 1 + 921285 921886 . 1 602 0 -chrVII 921285 921887 HC_gene_3296_tx_152 1 + 921285 921887 . 1 603 0 -chrVII 921285 921888 HC_gene_3296_tx_153 1 + 921285 921888 . 1 604 0 -chrVII 921285 921888 HC_gene_3296_tx_154 1 + 921285 921888 . 2 504,61 0,543 -chrVII 921285 921889 HC_gene_3296_tx_155 1 + 921285 921889 . 2 488,62 0,543 -chrVII 921285 921890 HC_gene_3296_tx_156 4 + 921285 921890 . 1 606 0 -chrVII 921285 921890 HC_gene_3296_tx_157 1 + 921285 921890 . 2 462,63 0,543 -chrVII 921285 921891 HC_gene_3296_tx_158 20 + 921285 921891 . 1 607 0 -chrVII 921285 921892 HC_gene_3296_tx_159 23 + 921285 921892 . 1 608 0 -chrVII 921285 921893 HC_gene_3296_tx_160 5 + 921285 921893 . 1 609 0 -chrVII 921285 921894 HC_gene_3296_tx_161 2 + 921285 921894 . 1 610 0 -chrVII 921285 921896 HC_gene_3296_tx_162 1 + 921285 921896 . 1 612 0 -chrVII 921285 921897 HC_gene_3296_tx_163 1 + 921285 921897 . 1 613 0 -chrVII 921285 921898 HC_gene_3296_tx_164 3 + 921285 921898 . 1 614 0 -chrVII 921285 921899 HC_gene_3296_tx_165 7 + 921285 921899 . 1 615 0 -chrVII 921285 921900 HC_gene_3296_tx_166 1 + 921285 921900 . 1 616 0 -chrVII 921285 921901 HC_gene_3296_tx_167 3 + 921285 921901 . 1 617 0 -chrVII 921285 921902 HC_gene_3296_tx_168 5 + 921285 921902 . 1 618 0 -chrVII 921285 921903 HC_gene_3296_tx_169 14 + 921285 921903 . 1 619 0 -chrVII 921285 921904 HC_gene_3296_tx_170 10 + 921285 921904 . 1 620 0 -chrVII 921285 921905 HC_gene_3296_tx_171 1 + 921285 921905 . 1 621 0 -chrVII 921285 921906 HC_gene_3296_tx_172 3 + 921285 921906 . 1 622 0 -chrVII 921285 921909 HC_gene_3296_tx_173 5 + 921285 921909 . 1 625 0 -chrVII 921285 921910 HC_gene_3296_tx_174 6 + 921285 921910 . 1 626 0 -chrVII 921285 921911 HC_gene_3296_tx_175 3 + 921285 921911 . 1 627 0 -chrVII 921285 921912 HC_gene_3296_tx_176 3 + 921285 921912 . 1 628 0 -chrVII 921285 921913 HC_gene_3296_tx_177 3 + 921285 921913 . 1 629 0 -chrVII 921285 921914 HC_gene_3296_tx_178 20 + 921285 921914 . 1 630 0 -chrVII 921285 921915 HC_gene_3296_tx_179 4 + 921285 921915 . 1 631 0 -chrVII 921285 921916 HC_gene_3296_tx_180 5 + 921285 921916 . 1 632 0 -chrVII 921285 921917 HC_gene_3296_tx_181 2 + 921285 921917 . 1 633 0 -chrVII 921285 921918 HC_gene_3296_tx_182 1 + 921285 921918 . 1 634 0 -chrVII 921285 921919 HC_gene_3296_tx_183 3 + 921285 921919 . 1 635 0 -chrVII 921285 921920 HC_gene_3296_tx_184 10 + 921285 921920 . 1 636 0 -chrVII 921285 921922 HC_gene_3296_tx_185 47 + 921285 921922 . 1 638 0 -chrVII 921285 921924 HC_gene_3296_tx_186 5 + 921285 921924 . 1 640 0 -chrVII 921285 921925 HC_gene_3296_tx_187 4 + 921285 921925 . 1 641 0 -chrVII 921285 921926 HC_gene_3296_tx_188 2 + 921285 921926 . 1 642 0 -chrVII 921285 921928 HC_gene_3296_tx_189 1 + 921285 921928 . 1 644 0 -chrVII 921285 921930 HC_gene_3296_tx_190 1 + 921285 921930 . 1 646 0 -chrVII 921285 921934 HC_gene_3296_tx_191 4 + 921285 921934 . 1 650 0 -chrVII 921285 921938 HC_gene_3296_tx_192 2 + 921285 921938 . 1 654 0 -chrVII 921285 921954 HC_gene_3296_tx_193 1 + 921285 921954 . 1 670 0 -chrVII 921285 921958 HC_gene_3296_tx_194 1 + 921285 921958 . 1 674 0 -chrVII 921285 921961 HC_gene_3296_tx_195 1 + 921285 921961 . 1 677 0 -chrVII 921285 921966 HC_gene_3296_tx_196 1 + 921285 921966 . 1 682 0 -chrVII 921285 922056 HC_gene_3296_tx_197 3 + 921285 922056 . 1 772 0 -chrVII 921385 921842 HC_gene_3296_tx_198 1 + 921385 921842 . 1 458 0 -chrVII 921385 921844 HC_gene_3296_tx_199 2 + 921385 921844 . 1 460 0 -chrVII 921385 921845 HC_gene_3296_tx_200 10 + 921385 921845 . 1 461 0 -chrVII 921385 921846 HC_gene_3296_tx_201 6 + 921385 921846 . 1 462 0 -chrVII 921385 921847 HC_gene_3296_tx_202 4 + 921385 921847 . 1 463 0 -chrVII 921385 921848 HC_gene_3296_tx_203 15 + 921385 921848 . 1 464 0 -chrVII 921385 921850 HC_gene_3296_tx_204 2 + 921385 921850 . 1 466 0 -chrVII 921385 921852 HC_gene_3296_tx_205 1 + 921385 921852 . 1 468 0 -chrVII 921385 921853 HC_gene_3296_tx_206 3 + 921385 921853 . 1 469 0 -chrVII 921385 921854 HC_gene_3296_tx_207 2 + 921385 921854 . 1 470 0 -chrVII 921385 921855 HC_gene_3296_tx_208 9 + 921385 921855 . 1 471 0 -chrVII 921385 921856 HC_gene_3296_tx_209 15 + 921385 921856 . 1 472 0 -chrVII 921385 921864 HC_gene_3296_tx_210 26 + 921385 921864 . 1 480 0 -chrVII 921385 921865 HC_gene_3296_tx_211 9 + 921385 921865 . 1 481 0 -chrVII 921385 921866 HC_gene_3296_tx_212 2 + 921385 921866 . 1 482 0 -chrVII 921385 921868 HC_gene_3296_tx_213 2 + 921385 921868 . 1 484 0 -chrVII 921385 921870 HC_gene_3296_tx_214 1 + 921385 921870 . 1 486 0 -chrVII 921385 921876 HC_gene_3296_tx_215 1 + 921385 921876 . 1 492 0 -chrVII 921385 921877 HC_gene_3296_tx_216 1 + 921385 921877 . 1 493 0 -chrVII 921385 921878 HC_gene_3296_tx_217 2 + 921385 921878 . 1 494 0 -chrVII 921385 921879 HC_gene_3296_tx_218 1 + 921385 921879 . 1 495 0 -chrVII 921385 921882 HC_gene_3296_tx_219 4 + 921385 921882 . 1 498 0 -chrVII 921385 921885 HC_gene_3296_tx_220 2 + 921385 921885 . 1 501 0 -chrVII 921385 921886 HC_gene_3296_tx_221 1 + 921385 921886 . 2 384,67 0,435 -chrVII 921385 921887 HC_gene_3296_tx_222 2 + 921385 921887 . 1 503 0 -chrVII 921385 921890 HC_gene_3296_tx_223 4 + 921385 921890 . 1 506 0 -chrVII 921385 921891 HC_gene_3296_tx_224 11 + 921385 921891 . 1 507 0 -chrVII 921385 921892 HC_gene_3296_tx_225 9 + 921385 921892 . 1 508 0 -chrVII 921385 921892 HC_gene_3296_tx_226 1 + 921385 921892 . 2 177,204 0,304 -chrVII 921385 921893 HC_gene_3296_tx_227 3 + 921385 921893 . 1 509 0 -chrVII 921385 921898 HC_gene_3296_tx_228 1 + 921385 921898 . 1 514 0 -chrVII 921385 921899 HC_gene_3296_tx_229 7 + 921385 921899 . 1 515 0 -chrVII 921385 921901 HC_gene_3296_tx_230 1 + 921385 921901 . 1 517 0 -chrVII 921385 921902 HC_gene_3296_tx_231 1 + 921385 921902 . 1 518 0 -chrVII 921385 921903 HC_gene_3296_tx_232 6 + 921385 921903 . 1 519 0 -chrVII 921385 921904 HC_gene_3296_tx_233 12 + 921385 921904 . 1 520 0 -chrVII 921385 921905 HC_gene_3296_tx_234 2 + 921385 921905 . 1 521 0 -chrVII 921385 921906 HC_gene_3296_tx_235 1 + 921385 921906 . 1 522 0 -chrVII 921385 921907 HC_gene_3296_tx_236 2 + 921385 921907 . 1 523 0 -chrVII 921385 921909 HC_gene_3296_tx_237 1 + 921385 921909 . 1 525 0 -chrVII 921385 921910 HC_gene_3296_tx_238 5 + 921385 921910 . 1 526 0 -chrVII 921385 921911 HC_gene_3296_tx_239 1 + 921385 921911 . 1 527 0 -chrVII 921385 921912 HC_gene_3296_tx_240 4 + 921385 921912 . 1 528 0 -chrVII 921385 921913 HC_gene_3296_tx_241 1 + 921385 921913 . 1 529 0 -chrVII 921385 921914 HC_gene_3296_tx_242 7 + 921385 921914 . 1 530 0 -chrVII 921385 921915 HC_gene_3296_tx_243 1 + 921385 921915 . 1 531 0 -chrVII 921385 921916 HC_gene_3296_tx_244 2 + 921385 921916 . 1 532 0 -chrVII 921385 921919 HC_gene_3296_tx_245 1 + 921385 921919 . 1 535 0 -chrVII 921385 921922 HC_gene_3296_tx_246 20 + 921385 921922 . 1 538 0 -chrVII 921385 921924 HC_gene_3296_tx_247 2 + 921385 921924 . 1 540 0 -chrVII 921385 921926 HC_gene_3296_tx_248 1 + 921385 921926 . 1 542 0 -chrVII 921385 921927 HC_gene_3296_tx_249 1 + 921385 921927 . 1 543 0 -chrVII 921385 921930 HC_gene_3296_tx_250 1 + 921385 921930 . 1 546 0 -chrVII 921385 921934 HC_gene_3296_tx_251 1 + 921385 921934 . 1 550 0 -chrVII 921385 921937 HC_gene_3296_tx_252 1 + 921385 921937 . 1 553 0 -chrVII 921385 921947 HC_gene_3296_tx_253 1 + 921385 921947 . 1 563 0 -chrVII 921385 922056 HC_gene_3296_tx_254 1 + 921385 922056 . 1 672 0 -chrVII 921588 921842 HC_gene_3296_tx_255 1 + 921588 921842 . 1 255 0 -chrVII 921588 921845 HC_gene_3296_tx_256 10 + 921588 921845 . 1 258 0 -chrVII 921588 921846 HC_gene_3296_tx_257 8 + 921588 921846 . 1 259 0 -chrVII 921588 921847 HC_gene_3296_tx_258 2 + 921588 921847 . 1 260 0 -chrVII 921588 921848 HC_gene_3296_tx_259 22 + 921588 921848 . 1 261 0 -chrVII 921588 921849 HC_gene_3296_tx_260 2 + 921588 921849 . 1 262 0 -chrVII 921588 921850 HC_gene_3296_tx_261 3 + 921588 921850 . 1 263 0 -chrVII 921588 921852 HC_gene_3296_tx_262 1 + 921588 921852 . 1 265 0 -chrVII 921588 921853 HC_gene_3296_tx_263 4 + 921588 921853 . 1 266 0 -chrVII 921588 921854 HC_gene_3296_tx_264 2 + 921588 921854 . 1 267 0 -chrVII 921588 921855 HC_gene_3296_tx_265 10 + 921588 921855 . 1 268 0 -chrVII 921588 921856 HC_gene_3296_tx_266 14 + 921588 921856 . 1 269 0 -chrVII 921588 921857 HC_gene_3296_tx_267 3 + 921588 921857 . 1 270 0 -chrVII 921588 921864 HC_gene_3296_tx_268 40 + 921588 921864 . 1 277 0 -chrVII 921588 921865 HC_gene_3296_tx_269 5 + 921588 921865 . 1 278 0 -chrVII 921588 921866 HC_gene_3296_tx_270 4 + 921588 921866 . 1 279 0 -chrVII 921588 921868 HC_gene_3296_tx_271 4 + 921588 921868 . 1 281 0 -chrVII 921588 921878 HC_gene_3296_tx_272 1 + 921588 921878 . 1 291 0 -chrVII 921588 921881 HC_gene_3296_tx_273 1 + 921588 921881 . 1 294 0 -chrVII 921588 921882 HC_gene_3296_tx_274 4 + 921588 921882 . 1 295 0 -chrVII 921588 921883 HC_gene_3296_tx_275 2 + 921588 921883 . 1 296 0 -chrVII 921588 921885 HC_gene_3296_tx_276 3 + 921588 921885 . 1 298 0 -chrVII 921588 921890 HC_gene_3296_tx_277 1 + 921588 921890 . 1 303 0 -chrVII 921588 921891 HC_gene_3296_tx_278 5 + 921588 921891 . 1 304 0 -chrVII 921588 921892 HC_gene_3296_tx_279 12 + 921588 921892 . 1 305 0 -chrVII 921588 921893 HC_gene_3296_tx_280 4 + 921588 921893 . 1 306 0 -chrVII 921588 921899 HC_gene_3296_tx_281 5 + 921588 921899 . 1 312 0 -chrVII 921588 921900 HC_gene_3296_tx_282 1 + 921588 921900 . 1 313 0 -chrVII 921588 921901 HC_gene_3296_tx_283 1 + 921588 921901 . 1 314 0 -chrVII 921588 921902 HC_gene_3296_tx_284 1 + 921588 921902 . 1 315 0 -chrVII 921588 921903 HC_gene_3296_tx_285 6 + 921588 921903 . 1 316 0 -chrVII 921588 921904 HC_gene_3296_tx_286 7 + 921588 921904 . 1 317 0 -chrVII 921588 921906 HC_gene_3296_tx_287 2 + 921588 921906 . 1 319 0 -chrVII 921588 921909 HC_gene_3296_tx_288 3 + 921588 921909 . 1 322 0 -chrVII 921588 921910 HC_gene_3296_tx_289 6 + 921588 921910 . 1 323 0 -chrVII 921588 921911 HC_gene_3296_tx_290 2 + 921588 921911 . 1 324 0 -chrVII 921588 921912 HC_gene_3296_tx_291 1 + 921588 921912 . 1 325 0 -chrVII 921588 921914 HC_gene_3296_tx_292 8 + 921588 921914 . 1 327 0 -chrVII 921588 921916 HC_gene_3296_tx_293 3 + 921588 921916 . 1 329 0 -chrVII 921588 921917 HC_gene_3296_tx_294 1 + 921588 921917 . 1 330 0 -chrVII 921588 921918 HC_gene_3296_tx_295 1 + 921588 921918 . 1 331 0 -chrVII 921588 921919 HC_gene_3296_tx_296 3 + 921588 921919 . 1 332 0 -chrVII 921588 921920 HC_gene_3296_tx_297 2 + 921588 921920 . 1 333 0 -chrVII 921588 921921 HC_gene_3296_tx_298 1 + 921588 921921 . 1 334 0 -chrVII 921588 921922 HC_gene_3296_tx_299 23 + 921588 921922 . 1 335 0 -chrVII 921588 921924 HC_gene_3296_tx_300 4 + 921588 921924 . 1 337 0 -chrVII 921588 921925 HC_gene_3296_tx_301 1 + 921588 921925 . 1 338 0 -chrVII 921588 921927 HC_gene_3296_tx_302 1 + 921588 921927 . 1 340 0 -chrVII 921588 921928 HC_gene_3296_tx_303 2 + 921588 921928 . 1 341 0 -chrVII 921588 921930 HC_gene_3296_tx_304 1 + 921588 921930 . 1 343 0 -chrVII 921588 921934 HC_gene_3296_tx_305 1 + 921588 921934 . 1 347 0 -chrVII 921588 921938 HC_gene_3296_tx_306 1 + 921588 921938 . 1 351 0 -chrVII 921588 921939 HC_gene_3296_tx_307 1 + 921588 921939 . 1 352 0 -chrVII 921588 921943 HC_gene_3296_tx_308 1 + 921588 921943 . 1 356 0 -chrVII 921588 921960 HC_gene_3296_tx_309 1 + 921588 921960 . 1 373 0 -chrVII 921588 921975 HC_gene_3296_tx_310 2 + 921588 921975 . 1 388 0 -chrVII 921588 922056 HC_gene_3296_tx_311 1 + 921588 922056 . 1 469 0 -chrVII 922126 922643 HC_gene_3297_tx_1 191 + 922126 922643 . 1 518 0 -chrVII 922287 922643 HC_gene_3297_tx_2 14 + 922287 922643 . 1 357 0 -chrVII 922376 924490 HC_gene_3733_tx_1 1 - 922376 924490 . 1 2115 0 -chrVII 922505 924490 HC_gene_3733_tx_2 12 - 922505 924490 . 1 1986 0 -chrVII 922505 924490 HC_gene_3733_tx_3 1 - 922505 924490 . 2 849,1078 0,908 -chrVII 922505 924490 HC_gene_3733_tx_4 1 - 922505 924490 . 2 1602,193 0,1793 -chrVII 922594 924490 HC_gene_3733_tx_5 1 - 922594 924490 . 1 1897 0 -chrVII 924644 930864 MC_gene_3298_tx_1 1 + 924644 930864 . 1 6221 0 -chrVII 930782 931005 LC_gene_3734_tx_1 1 - 930782 931005 . 1 224 0 -chrVII 931152 932022 MC_gene_3735_tx_1 1 - 931152 932022 . 1 871 0 -chrVII 931234 931984 MC_gene_3299_tx_1 1 + 931234 931984 . 1 751 0 -chrVII 932241 935879 HC_gene_3300_tx_1 1 + 932241 935879 . 1 3639 0 -chrVII 932241 936002 HC_gene_3300_tx_2 7 + 932241 936002 . 1 3762 0 -chrVII 933886 936002 HC_gene_3300_tx_3 3 + 933886 936002 . 1 2117 0 -chrVII 933886 936002 HC_gene_3300_tx_4 1 + 933886 936002 . 2 739,1304 0,813 -chrVII 934311 936002 HC_gene_3300_tx_5 2 + 934311 936002 . 1 1692 0 -chrVII 934780 936002 HC_gene_3300_tx_6 13 + 934780 936002 . 1 1223 0 -chrVII 935792 936910 HC_gene_3736_tx_1 3 - 935792 936910 . 1 1119 0 -chrVII 935996 936910 HC_gene_3736_tx_2 116 - 935996 936910 . 1 915 0 -chrVII 937048 939080 HC_gene_3737_tx_1 8 - 937048 939080 . 1 2033 0 -chrVII 937107 937817 HC_gene_3301_tx_1 1 + 937107 937817 . 1 711 0 -chrVII 937107 938213 HC_gene_3301_tx_2 1 + 937107 938213 . 1 1107 0 -chrVII 937107 938286 HC_gene_3301_tx_3 2 + 937107 938286 . 1 1180 0 -chrVII 937658 939080 HC_gene_3737_tx_2 1 - 937658 939080 . 1 1423 0 -chrVII 937663 939080 HC_gene_3737_tx_3 1 - 937663 939080 . 1 1418 0 -chrVII 937722 939080 HC_gene_3737_tx_4 1 - 937722 939080 . 1 1359 0 -chrVII 938772 939080 HC_gene_3737_tx_5 1 - 938772 939080 . 1 309 0 -chrVII 939348 939672 HC_gene_3738_tx_1 3 - 939348 939672 . 1 325 0 -chrVII 939661 940898 HC_gene_3302_tx_1 1 + 939661 940898 . 1 1238 0 -chrVII 939918 940898 HC_gene_3302_tx_2 55 + 939918 940898 . 1 981 0 -chrVII 940164 940898 HC_gene_3302_tx_3 9 + 940164 940898 . 1 735 0 -chrVII 940339 940898 HC_gene_3302_tx_4 11 + 940339 940898 . 1 560 0 -chrVII 940444 940898 HC_gene_3302_tx_5 9 + 940444 940898 . 1 455 0 -chrVII 940785 942265 HC_gene_3739_tx_1 17 - 940785 942265 . 1 1481 0 -chrVII 942296 943449 HC_gene_3740_tx_1 1 - 942296 943449 . 1 1154 0 -chrVII 942296 944866 HC_gene_3740_tx_2 1 - 942296 944866 . 1 2571 0 -chrVII 942660 943449 HC_gene_3740_tx_4 1 - 942660 943449 . 1 790 0 -chrVII 942660 944866 HC_gene_3740_tx_3 1 - 942660 944866 . 1 2207 0 -chrVII 945047 947156 MC_gene_3303_tx_1 1 + 945047 947156 . 1 2110 0 -chrVII 945121 945406 MC_gene_3303_tx_2 1 + 945121 945406 . 1 286 0 -chrVII 947340 949098 HC_gene_3304_tx_1 10 + 947340 949098 . 1 1759 0 -chrVII 947340 949173 HC_gene_3304_tx_2 13 + 947340 949173 . 1 1834 0 -chrVII 947340 949306 HC_gene_3304_tx_3 8 + 947340 949306 . 1 1967 0 -chrVII 949175 949578 HC_gene_3741_tx_1 46 - 949175 949578 . 1 404 0 -chrVII 949175 949749 HC_gene_3741_tx_2 66 - 949175 949749 . 1 575 0 -chrVII 949175 949951 HC_gene_3741_tx_3 44 - 949175 949951 . 1 777 0 -chrVII 949175 950391 HC_gene_3741_tx_4 7 - 949175 950391 . 1 1217 0 -chrVII 949175 950796 HC_gene_3741_tx_5 11 - 949175 950796 . 1 1622 0 -chrVII 949175 950948 HC_gene_3741_tx_6 14 - 949175 950948 . 1 1774 0 -chrVII 949175 951176 HC_gene_3741_tx_7 54 - 949175 951176 . 1 2002 0 -chrVII 949175 951176 HC_gene_3741_tx_8 1 - 949175 951176 . 3 827,125,320 0,977,1682 -chrVII 949175 951176 HC_gene_3741_tx_9 1 - 949175 951176 . 2 778,1160 0,842 -chrVII 949175 951176 HC_gene_3741_tx_10 1 - 949175 951176 . 2 721,1032 0,970 -chrVII 949175 951205 HC_gene_3741_tx_11 1 - 949175 951205 . 2 1001,269 0,1762 -chrVII 951243 951764 MC_gene_3742_tx_1 1 - 951243 951764 . 1 522 0 -chrVII 951545 952329 HC_gene_3305_tx_1 1 + 951545 952329 . 1 785 0 -chrVII 951545 952406 HC_gene_3305_tx_2 7 + 951545 952406 . 1 862 0 -chrVII 951761 952406 HC_gene_3305_tx_3 26 + 951761 952406 . 1 646 0 -chrVII 951844 952406 HC_gene_3305_tx_4 6 + 951844 952406 . 1 563 0 -chrVII 952031 952406 HC_gene_3305_tx_5 35 + 952031 952406 . 1 376 0 -chrVII 952320 952556 HC_gene_3743_tx_1 33 - 952320 952556 . 1 237 0 -chrVII 952320 952655 HC_gene_3743_tx_2 32 - 952320 952655 . 1 336 0 -chrVII 952320 953000 HC_gene_3743_tx_3 30 - 952320 953000 . 1 681 0 -chrVII 952320 953168 HC_gene_3743_tx_4 18 - 952320 953168 . 1 849 0 -chrVII 952320 953255 HC_gene_3743_tx_5 8 - 952320 953255 . 1 936 0 -chrVII 952320 953354 HC_gene_3743_tx_6 23 - 952320 953354 . 1 1035 0 -chrVII 952320 953516 HC_gene_3743_tx_7 181 - 952320 953516 . 1 1197 0 -chrVII 952320 953516 HC_gene_3743_tx_8 1 - 952320 953516 . 2 496,240 0,957 -chrVII 952320 953516 HC_gene_3743_tx_9 1 - 952320 953516 . 2 880,234 0,963 -chrVII 952397 952556 HC_gene_3743_tx_21 1 - 952397 952556 . 1 160 0 -chrVII 952397 952655 HC_gene_3743_tx_22 3 - 952397 952655 . 1 259 0 -chrVII 952397 953000 HC_gene_3743_tx_10 2 - 952397 953000 . 1 604 0 -chrVII 952397 953168 HC_gene_3743_tx_11 4 - 952397 953168 . 1 772 0 -chrVII 952397 953255 HC_gene_3743_tx_12 1 - 952397 953255 . 1 859 0 -chrVII 952397 953354 HC_gene_3743_tx_13 7 - 952397 953354 . 1 958 0 -chrVII 952397 953516 HC_gene_3743_tx_14 40 - 952397 953516 . 1 1120 0 -chrVII 952482 952655 HC_gene_3743_tx_23 1 - 952482 952655 . 1 174 0 -chrVII 952482 953000 HC_gene_3743_tx_15 5 - 952482 953000 . 1 519 0 -chrVII 952482 953168 HC_gene_3743_tx_16 4 - 952482 953168 . 1 687 0 -chrVII 952482 953255 HC_gene_3743_tx_17 5 - 952482 953255 . 1 774 0 -chrVII 952482 953354 HC_gene_3743_tx_18 4 - 952482 953354 . 1 873 0 -chrVII 952482 953516 HC_gene_3743_tx_19 43 - 952482 953516 . 1 1035 0 -chrVII 952482 953539 HC_gene_3743_tx_20 1 - 952482 953539 . 1 1058 0 -chrVII 953751 954703 HC_gene_3306_tx_1 2 + 953751 954703 . 1 953 0 -chrVII 953847 954703 HC_gene_3306_tx_2 10 + 953847 954703 . 1 857 0 -chrVII 953937 954703 HC_gene_3306_tx_3 121 + 953937 954703 . 1 767 0 -chrVII 954220 954703 HC_gene_3306_tx_4 11 + 954220 954703 . 1 484 0 -chrVII 954279 954703 HC_gene_3306_tx_5 23 + 954279 954703 . 1 425 0 -chrVII 954610 958435 HC_gene_3744_tx_1 2 - 954610 958435 . 1 3826 0 -chrVII 954610 958435 HC_gene_3744_tx_2 1 - 954610 958435 . 2 1059,2695 0,1131 -chrVII 957149 957942 LC_gene_3307_tx_1 1 + 957149 957942 . 1 794 0 -chrVII 958110 958800 LC_gene_3308_tx_1 1 + 958110 958800 . 1 691 0 -chrVII 958618 959027 HC_gene_3745_tx_1 3 - 958618 959027 . 1 410 0 -chrVII 958618 959376 HC_gene_3745_tx_2 2 - 958618 959376 . 1 759 0 -chrVII 958754 959027 HC_gene_3745_tx_4 5 - 958754 959027 . 1 274 0 -chrVII 958754 959376 HC_gene_3745_tx_3 4 - 958754 959376 . 1 623 0 -chrVII 959883 961231 HC_gene_3309_tx_1 2 + 959883 961231 . 1 1349 0 -chrVII 959883 961362 HC_gene_3309_tx_2 251 + 959883 961362 . 1 1480 0 -chrVII 960271 961362 HC_gene_3309_tx_3 25 + 960271 961362 . 1 1092 0 -chrVII 960516 961362 HC_gene_3309_tx_4 32 + 960516 961362 . 1 847 0 -chrVII 960610 961362 HC_gene_3309_tx_5 41 + 960610 961362 . 1 753 0 -chrVII 960745 961362 HC_gene_3309_tx_6 54 + 960745 961362 . 1 618 0 -chrVII 961106 961362 HC_gene_3309_tx_7 56 + 961106 961362 . 1 257 0 -chrVII 961107 961600 HC_gene_3746_tx_1 2 - 961107 961600 . 1 494 0 -chrVII 961107 961692 HC_gene_3746_tx_2 1 - 961107 961692 . 1 586 0 -chrVII 961107 961884 HC_gene_3746_tx_3 1 - 961107 961884 . 1 778 0 -chrVII 961107 962133 HC_gene_3746_tx_5 16 - 961107 962133 . 1 1027 0 -chrVII 961107 962133 HC_gene_3746_tx_6 1 - 961107 962133 . 2 138,720 0,307 -chrVII 961250 961600 HC_gene_3746_tx_10 13 - 961250 961600 . 1 351 0 -chrVII 961250 961692 HC_gene_3746_tx_11 14 - 961250 961692 . 1 443 0 -chrVII 961250 961884 HC_gene_3746_tx_4 7 - 961250 961884 . 1 635 0 -chrVII 961250 962133 HC_gene_3746_tx_7 136 - 961250 962133 . 1 884 0 -chrVII 961250 962133 HC_gene_3746_tx_8 1 - 961250 962133 . 2 219,477 0,407 -chrVII 961250 962133 HC_gene_3746_tx_9 1 - 961250 962133 . 2 355,429 0,455 -chrVII 962343 962740 MC_gene_3747_tx_1 1 - 962343 962740 . 1 398 0 -chrVII 962378 962733 LC_gene_3310_tx_1 1 + 962378 962733 . 1 356 0 -chrVII 962817 963602 HC_gene_3748_tx_1 1 - 962817 963602 . 1 786 0 -chrVII 962817 965698 HC_gene_3748_tx_2 1 - 962817 965698 . 1 2882 0 -chrVII 963120 963526 HC_gene_3748_tx_4 4 - 963120 963526 . 1 407 0 -chrVII 963120 963602 HC_gene_3748_tx_5 10 - 963120 963602 . 1 483 0 -chrVII 963120 963703 HC_gene_3748_tx_6 7 - 963120 963703 . 1 584 0 -chrVII 963120 963827 HC_gene_3748_tx_7 4 - 963120 963827 . 1 708 0 -chrVII 963120 964914 HC_gene_3748_tx_8 1 - 963120 964914 . 1 1795 0 -chrVII 963120 965698 HC_gene_3748_tx_3 7 - 963120 965698 . 1 2579 0 -chrVII 963838 964583 LC_gene_3311_tx_1 1 + 963838 964583 . 1 746 0 -chrVII 965259 965742 MC_gene_3312_tx_1 1 + 965259 965742 . 1 484 0 -chrVII 965916 968525 HC_gene_3749_tx_1 1 - 965916 968525 . 1 2610 0 -chrVII 965916 968655 HC_gene_3749_tx_2 2 - 965916 968655 . 1 2740 0 -chrVII 968028 968655 HC_gene_3749_tx_3 5 - 968028 968655 . 1 628 0 -chrVII 968828 969190 HC_gene_3313_tx_1 18 + 968828 969190 . 1 363 0 -chrVII 969087 969415 HC_gene_3750_tx_1 43 - 969087 969415 . 1 329 0 -chrVII 970325 970510 HC_gene_3314_tx_1 1 + 970325 970510 . 1 186 0 -chrVII 970325 970732 HC_gene_3314_tx_2 11 + 970325 970732 . 1 408 0 -chrVII 970538 970874 HC_gene_3751_tx_1 104 - 970538 970874 . 1 337 0 -chrVII 970538 971001 HC_gene_3751_tx_2 134 - 970538 971001 . 1 464 0 -chrVII 970538 971193 HC_gene_3751_tx_3 123 - 970538 971193 . 1 656 0 -chrVII 970538 971430 HC_gene_3751_tx_4 43 - 970538 971430 . 1 893 0 -chrVII 970538 971679 HC_gene_3751_tx_5 71 - 970538 971679 . 1 1142 0 -chrVII 970538 972233 HC_gene_3751_tx_6 40 - 970538 972233 . 1 1696 0 -chrVII 970538 972233 HC_gene_3751_tx_7 1 - 970538 972233 . 2 891,468 0,1228 -chrVII 970538 972233 HC_gene_3751_tx_8 1 - 970538 972233 . 2 418,1086 0,610 -chrVII 970538 972233 HC_gene_3751_tx_9 1 - 970538 972233 . 2 1100,336 0,1360 -chrVII 970538 972524 HC_gene_3751_tx_10 34 - 970538 972524 . 1 1987 0 -chrVII 970538 972831 HC_gene_3751_tx_11 51 - 970538 972831 . 1 2294 0 -chrVII 970538 972981 HC_gene_3751_tx_12 7 - 970538 972981 . 1 2444 0 -chrVII 970538 973392 HC_gene_3751_tx_13 11 - 970538 973392 . 1 2855 0 -chrVII 970538 973392 HC_gene_3751_tx_14 1 - 970538 973392 . 2 988,1429 0,1426 -chrVII 970538 973502 HC_gene_3751_tx_15 21 - 970538 973502 . 1 2965 0 -chrVII 970538 973502 HC_gene_3751_tx_16 1 - 970538 973502 . 2 2471,350 0,2615 -chrVII 970538 973502 HC_gene_3751_tx_17 1 - 970538 973502 . 2 2660,155 0,2810 -chrVII 970538 973502 HC_gene_3751_tx_18 1 - 970538 973502 . 2 2372,249 0,2716 -chrVII 970538 973502 HC_gene_3751_tx_19 1 - 970538 973502 . 2 1343,1539 0,1426 -chrVII 970538 973502 HC_gene_3751_tx_20 1 - 970538 973502 . 2 2519,267 0,2698 -chrVII 970538 973755 HC_gene_3751_tx_21 11 - 970538 973755 . 1 3218 0 -chrVII 970538 973755 HC_gene_3751_tx_22 1 - 970538 973755 . 2 1464,1660 0,1558 -chrVII 970538 973755 HC_gene_3751_tx_23 1 - 970538 973755 . 2 2730,306 0,2912 -chrVII 970538 973868 HC_gene_3751_tx_24 1 - 970538 973868 . 2 2203,1050 0,2281 -chrVII 970538 973968 HC_gene_3751_tx_25 105 - 970538 973968 . 1 3431 0 -chrVII 970538 973968 HC_gene_3751_tx_26 1 - 970538 973968 . 2 2425,493 0,2938 -chrVII 970538 973968 HC_gene_3751_tx_27 1 - 970538 973968 . 2 1481,1855 0,1576 -chrVII 970538 973968 HC_gene_3751_tx_28 1 - 970538 973968 . 2 1910,787 0,2644 -chrVII 970538 973968 HC_gene_3751_tx_29 1 - 970538 973968 . 2 1019,2329 0,1102 -chrVII 970538 973968 HC_gene_3751_tx_30 1 - 970538 973968 . 2 2212,1129 0,2302 -chrVII 970538 973968 HC_gene_3751_tx_31 1 - 970538 973968 . 2 2893,373 0,3058 -chrVII 970538 973968 HC_gene_3751_tx_32 1 - 970538 973968 . 7 410,416,234,277,101,156,274 0,1265,1742,2175,2668,2887,3157 -chrVII 970538 973968 HC_gene_3751_tx_33 1 - 970538 973968 . 2 2937,274 0,3157 -chrVII 970538 973968 HC_gene_3751_tx_34 1 - 970538 973968 . 2 914,2236 0,1195 -chrVII 970538 973968 HC_gene_3751_tx_35 1 - 970538 973968 . 2 78,3317 0,114 -chrVII 970538 973968 HC_gene_3751_tx_36 1 - 970538 973968 . 2 2735,493 0,2938 -chrVII 970538 973968 HC_gene_3751_tx_37 1 - 970538 973968 . 2 2281,448 0,2983 -chrVII 970538 973968 HC_gene_3751_tx_38 1 - 970538 973968 . 2 2537,183 0,3248 -chrVII 970538 973968 HC_gene_3751_tx_39 1 - 970538 973968 . 2 1609,1711 0,1720 -chrVII 970538 973968 HC_gene_3751_tx_40 1 - 970538 973968 . 2 1481,1798 0,1633 -chrVII 970538 973968 HC_gene_3751_tx_41 1 - 970538 973968 . 2 2953,274 0,3157 -chrVII 974027 974427 MC_gene_3752_tx_1 1 - 974027 974427 . 1 401 0 -chrVII 974230 974908 HC_gene_3315_tx_1 1 + 974230 974908 . 1 679 0 -chrVII 974234 974908 HC_gene_3315_tx_2 1 + 974234 974908 . 1 675 0 -chrVII 974256 974908 HC_gene_3315_tx_3 1 + 974256 974908 . 1 653 0 -chrVII 974258 974908 HC_gene_3315_tx_4 1 + 974258 974908 . 1 651 0 -chrVII 974262 974908 HC_gene_3315_tx_5 1 + 974262 974908 . 1 647 0 -chrVII 974264 974908 HC_gene_3315_tx_6 1 + 974264 974908 . 1 645 0 -chrVII 974314 974908 HC_gene_3315_tx_7 1 + 974314 974908 . 1 595 0 -chrVII 974321 974908 HC_gene_3315_tx_8 1 + 974321 974908 . 1 588 0 -chrVII 974333 974908 HC_gene_3315_tx_9 2 + 974333 974908 . 1 576 0 -chrVII 974336 974908 HC_gene_3315_tx_10 1 + 974336 974908 . 1 573 0 -chrVII 974363 974908 HC_gene_3315_tx_11 1 + 974363 974908 . 1 546 0 -chrVII 974368 974908 HC_gene_3315_tx_12 1 + 974368 974908 . 1 541 0 -chrVII 974375 974908 HC_gene_3315_tx_13 48 + 974375 974908 . 1 534 0 -chrVII 974389 974908 HC_gene_3315_tx_14 2 + 974389 974908 . 1 520 0 -chrVII 974390 974908 HC_gene_3315_tx_15 1 + 974390 974908 . 1 519 0 -chrVII 974391 974908 HC_gene_3315_tx_16 1 + 974391 974908 . 1 518 0 -chrVII 974393 974908 HC_gene_3315_tx_17 1 + 974393 974908 . 1 516 0 -chrVII 974397 974908 HC_gene_3315_tx_18 1 + 974397 974908 . 1 512 0 -chrVII 974402 974908 HC_gene_3315_tx_19 1 + 974402 974908 . 1 507 0 -chrVII 974801 975232 HC_gene_3753_tx_1 13 - 974801 975232 . 1 432 0 -chrVII 974801 975625 HC_gene_3753_tx_2 4 - 974801 975625 . 1 825 0 -chrVII 974801 975767 HC_gene_3753_tx_3 3 - 974801 975767 . 1 967 0 -chrVII 974801 976547 HC_gene_3753_tx_4 2 - 974801 976547 . 1 1747 0 -chrVII 974801 976698 HC_gene_3753_tx_5 1 - 974801 976698 . 2 1134,650 0,1248 -chrVII 974801 976698 HC_gene_3753_tx_6 15 - 974801 976698 . 1 1898 0 -chrVII 974801 976698 HC_gene_3753_tx_7 1 - 974801 976698 . 2 891,931 0,967 -chrVII 977240 977818 HC_gene_3316_tx_1 20 + 977240 977818 . 1 579 0 -chrVII 977433 977818 HC_gene_3316_tx_2 4 + 977433 977818 . 1 386 0 -chrVII 977687 977818 HC_gene_3316_tx_3 1 + 977687 977818 . 1 132 0 -chrVII 977961 978748 HC_gene_3754_tx_1 11 - 977961 978748 . 1 788 0 -chrVII 977961 978941 HC_gene_3754_tx_2 10 - 977961 978941 . 1 981 0 -chrVII 977961 979066 HC_gene_3754_tx_3 13 - 977961 979066 . 1 1106 0 -chrVII 977961 979190 HC_gene_3754_tx_4 5 - 977961 979190 . 1 1230 0 -chrVII 977961 979266 HC_gene_3754_tx_5 3 - 977961 979266 . 1 1306 0 -chrVII 977961 979393 HC_gene_3754_tx_6 1 - 977961 979393 . 2 643,210 0,1223 -chrVII 977961 979410 HC_gene_3754_tx_7 1 - 977961 979410 . 2 1150,158 0,1292 -chrVII 977961 979432 HC_gene_3754_tx_8 72 - 977961 979432 . 1 1472 0 -chrVII 977961 979432 HC_gene_3754_tx_9 1 - 977961 979432 . 2 541,862 0,610 -chrVII 977961 980519 HC_gene_3754_tx_10 1 - 977961 980519 . 1 2559 0 -chrVII 978370 979191 LC_gene_3317_tx_1 1 + 978370 979191 . 1 822 0 -chrVII 979329 979996 HC_gene_3754_tx_11 1 - 979329 979996 . 1 668 0 -chrVII 979329 980345 HC_gene_3754_tx_12 2 - 979329 980345 . 1 1017 0 -chrVII 979329 980519 HC_gene_3754_tx_13 1 - 979329 980519 . 1 1191 0 -chrVII 979329 982156 HC_gene_3754_tx_64 1 - 979329 982156 . 1 2828 0 -chrVII 979465 979996 HC_gene_3754_tx_14 6 - 979465 979996 . 1 532 0 -chrVII 979465 980101 HC_gene_3754_tx_15 2 - 979465 980101 . 1 637 0 -chrVII 979465 980168 HC_gene_3754_tx_16 3 - 979465 980168 . 1 704 0 -chrVII 979465 980270 HC_gene_3754_tx_17 2 - 979465 980270 . 1 806 0 -chrVII 979465 980345 HC_gene_3754_tx_18 1 - 979465 980345 . 2 456,324 0,557 -chrVII 979465 980345 HC_gene_3754_tx_19 3 - 979465 980345 . 1 881 0 -chrVII 979465 980519 HC_gene_3754_tx_20 2 - 979465 980519 . 1 1055 0 -chrVII 979465 980653 HC_gene_3754_tx_21 1 - 979465 980653 . 1 1189 0 -chrVII 979465 981230 HC_gene_3754_tx_73 1 - 979465 981230 . 1 1766 0 -chrVII 979465 981312 HC_gene_3754_tx_74 1 - 979465 981312 . 1 1848 0 -chrVII 979465 981376 HC_gene_3754_tx_75 1 - 979465 981376 . 1 1912 0 -chrVII 979465 982156 HC_gene_3754_tx_65 1 - 979465 982156 . 2 521,2125 0,567 -chrVII 979465 982156 HC_gene_3754_tx_66 1 - 979465 982156 . 2 2192,211 0,2481 -chrVII 979465 982156 HC_gene_3754_tx_67 2 - 979465 982156 . 1 2692 0 -chrVII 979587 980101 HC_gene_3754_tx_22 1 - 979587 980101 . 1 515 0 -chrVII 979593 980345 HC_gene_3754_tx_23 1 - 979593 980345 . 1 753 0 -chrVII 979593 980653 HC_gene_3754_tx_24 1 - 979593 980653 . 1 1061 0 -chrVII 979595 980101 HC_gene_3754_tx_25 1 - 979595 980101 . 1 507 0 -chrVII 979598 979996 HC_gene_3754_tx_90 1 - 979598 979996 . 1 399 0 -chrVII 979600 980101 HC_gene_3754_tx_26 1 - 979600 980101 . 1 502 0 -chrVII 979600 981376 HC_gene_3754_tx_76 1 - 979600 981376 . 2 501,857 0,920 -chrVII 979601 979996 HC_gene_3754_tx_91 1 - 979601 979996 . 1 396 0 -chrVII 979602 980345 HC_gene_3754_tx_27 1 - 979602 980345 . 1 744 0 -chrVII 979607 980345 HC_gene_3754_tx_28 1 - 979607 980345 . 1 739 0 -chrVII 979622 981376 HC_gene_3754_tx_77 1 - 979622 981376 . 1 1755 0 -chrVII 979622 982156 HC_gene_3754_tx_68 1 - 979622 982156 . 1 2535 0 -chrVII 979623 979996 HC_gene_3754_tx_92 1 - 979623 979996 . 1 374 0 -chrVII 979624 979996 HC_gene_3754_tx_93 1 - 979624 979996 . 1 373 0 -chrVII 979624 980101 HC_gene_3754_tx_29 1 - 979624 980101 . 1 478 0 -chrVII 979624 980168 HC_gene_3754_tx_30 2 - 979624 980168 . 1 545 0 -chrVII 979624 980519 HC_gene_3754_tx_31 2 - 979624 980519 . 1 896 0 -chrVII 979624 980653 HC_gene_3754_tx_32 1 - 979624 980653 . 1 1030 0 -chrVII 979624 981312 HC_gene_3754_tx_78 1 - 979624 981312 . 1 1689 0 -chrVII 979626 981376 HC_gene_3754_tx_79 1 - 979626 981376 . 1 1751 0 -chrVII 979627 979996 HC_gene_3754_tx_94 1 - 979627 979996 . 1 370 0 -chrVII 979644 982156 HC_gene_3754_tx_69 1 - 979644 982156 . 2 653,1260 0,1253 -chrVII 979646 980168 HC_gene_3754_tx_33 1 - 979646 980168 . 1 523 0 -chrVII 979646 980345 HC_gene_3754_tx_34 1 - 979646 980345 . 1 700 0 -chrVII 979648 979996 HC_gene_3754_tx_95 1 - 979648 979996 . 1 349 0 -chrVII 979648 980101 HC_gene_3754_tx_35 1 - 979648 980101 . 1 454 0 -chrVII 979648 980270 HC_gene_3754_tx_36 1 - 979648 980270 . 1 623 0 -chrVII 979649 979996 HC_gene_3754_tx_96 7 - 979649 979996 . 1 348 0 -chrVII 979649 980101 HC_gene_3754_tx_37 1 - 979649 980101 . 1 453 0 -chrVII 979649 980168 HC_gene_3754_tx_38 4 - 979649 980168 . 1 520 0 -chrVII 979649 980270 HC_gene_3754_tx_39 3 - 979649 980270 . 1 622 0 -chrVII 979649 980345 HC_gene_3754_tx_40 2 - 979649 980345 . 1 697 0 -chrVII 979649 980519 HC_gene_3754_tx_41 2 - 979649 980519 . 1 871 0 -chrVII 979649 980653 HC_gene_3754_tx_42 1 - 979649 980653 . 1 1005 0 -chrVII 979649 980947 HC_gene_3754_tx_80 1 - 979649 980947 . 1 1299 0 -chrVII 979649 981230 HC_gene_3754_tx_81 2 - 979649 981230 . 1 1582 0 -chrVII 979649 981376 HC_gene_3754_tx_82 1 - 979649 981376 . 1 1728 0 -chrVII 979649 982156 HC_gene_3754_tx_70 2 - 979649 982156 . 1 2508 0 -chrVII 979650 979996 HC_gene_3754_tx_97 3 - 979650 979996 . 1 347 0 -chrVII 979650 980101 HC_gene_3754_tx_43 1 - 979650 980101 . 1 452 0 -chrVII 979650 980168 HC_gene_3754_tx_44 1 - 979650 980168 . 1 519 0 -chrVII 979650 980345 HC_gene_3754_tx_45 1 - 979650 980345 . 1 696 0 -chrVII 979650 981376 HC_gene_3754_tx_83 1 - 979650 981376 . 1 1727 0 -chrVII 979650 982156 HC_gene_3754_tx_71 2 - 979650 982156 . 1 2507 0 -chrVII 979651 980168 HC_gene_3754_tx_46 1 - 979651 980168 . 1 518 0 -chrVII 979651 981376 HC_gene_3754_tx_84 1 - 979651 981376 . 1 1726 0 -chrVII 979654 980168 HC_gene_3754_tx_47 1 - 979654 980168 . 1 515 0 -chrVII 979655 981312 HC_gene_3754_tx_85 1 - 979655 981312 . 1 1658 0 -chrVII 979656 980101 HC_gene_3754_tx_48 1 - 979656 980101 . 1 446 0 -chrVII 979656 980270 HC_gene_3754_tx_49 1 - 979656 980270 . 1 615 0 -chrVII 979661 980270 HC_gene_3754_tx_50 1 - 979661 980270 . 1 610 0 -chrVII 979665 980168 HC_gene_3754_tx_51 1 - 979665 980168 . 1 504 0 -chrVII 979665 980345 HC_gene_3754_tx_52 1 - 979665 980345 . 1 681 0 -chrVII 979665 980519 HC_gene_3754_tx_53 2 - 979665 980519 . 1 855 0 -chrVII 979665 981312 HC_gene_3754_tx_86 1 - 979665 981312 . 2 1288,178 0,1470 -chrVII 979667 980270 HC_gene_3754_tx_54 1 - 979667 980270 . 1 604 0 -chrVII 979667 980947 HC_gene_3754_tx_87 1 - 979667 980947 . 1 1281 0 -chrVII 979668 980345 HC_gene_3754_tx_55 1 - 979668 980345 . 1 678 0 -chrVII 979668 981230 HC_gene_3754_tx_88 1 - 979668 981230 . 1 1563 0 -chrVII 979668 981312 HC_gene_3754_tx_89 1 - 979668 981312 . 1 1645 0 -chrVII 979669 980101 HC_gene_3754_tx_56 1 - 979669 980101 . 1 433 0 -chrVII 979669 982156 HC_gene_3754_tx_72 1 - 979669 982156 . 1 2488 0 -chrVII 979670 980345 HC_gene_3754_tx_57 1 - 979670 980345 . 1 676 0 -chrVII 979673 980519 HC_gene_3754_tx_58 1 - 979673 980519 . 1 847 0 -chrVII 979675 980345 HC_gene_3754_tx_59 1 - 979675 980345 . 1 671 0 -chrVII 979678 980653 HC_gene_3754_tx_60 1 - 979678 980653 . 1 976 0 -chrVII 979684 979996 HC_gene_3754_tx_98 1 - 979684 979996 . 1 313 0 -chrVII 979689 979996 HC_gene_3754_tx_99 1 - 979689 979996 . 1 308 0 -chrVII 979690 980345 HC_gene_3754_tx_61 1 - 979690 980345 . 1 656 0 -chrVII 979691 980101 HC_gene_3754_tx_62 1 - 979691 980101 . 1 411 0 -chrVII 979701 980345 HC_gene_3754_tx_63 1 - 979701 980345 . 1 645 0 -chrVII 979704 979996 HC_gene_3754_tx_100 1 - 979704 979996 . 1 293 0 -chrVII 979705 979996 HC_gene_3754_tx_101 1 - 979705 979996 . 1 292 0 -chrVII 982315 983211 HC_gene_3755_tx_1 8 - 982315 983211 . 1 897 0 -chrVII 982315 983426 HC_gene_3755_tx_2 5 - 982315 983426 . 1 1112 0 -chrVII 982315 984287 HC_gene_3755_tx_3 29 - 982315 984287 . 1 1973 0 -chrVII 984416 984695 MC_gene_3318_tx_1 1 + 984416 984695 . 1 280 0 -chrVII 984595 985707 LC_gene_3756_tx_1 1 - 984595 985707 . 1 1113 0 -chrVII 984865 985777 HC_gene_3319_tx_1 23 + 984865 985777 . 1 913 0 -chrVII 985088 985777 HC_gene_3319_tx_2 1 + 985088 985777 . 1 690 0 -chrVII 985937 986838 MC_gene_3320_tx_1 1 + 985937 986838 . 1 902 0 -chrVII 986063 986827 MC_gene_3320_tx_2 1 + 986063 986827 . 1 765 0 -chrVII 987237 987918 LC_gene_3321_tx_1 1 + 987237 987918 . 1 682 0 -chrVII 987861 989674 HC_gene_3757_tx_1 1 - 987861 989674 . 1 1814 0 -chrVII 987924 989916 HC_gene_3322_tx_1 4 + 987924 989916 . 1 1993 0 -chrVII 990179 990834 MC_gene_3323_tx_1 1 + 990179 990834 . 1 656 0 -chrVII 991073 991433 HC_gene_3758_tx_1 15 - 991073 991433 . 1 361 0 -chrVII 991073 991604 HC_gene_3758_tx_2 5 - 991073 991604 . 1 532 0 -chrVII 991073 991658 HC_gene_3758_tx_3 3 - 991073 991658 . 1 586 0 -chrVII 991073 991720 HC_gene_3758_tx_4 2 - 991073 991720 . 1 648 0 -chrVII 991073 991797 HC_gene_3758_tx_5 9 - 991073 991797 . 1 725 0 -chrVII 991073 992198 HC_gene_3758_tx_6 2 - 991073 992198 . 1 1126 0 -chrVII 991073 992377 HC_gene_3758_tx_7 3 - 991073 992377 . 1 1305 0 -chrVII 991073 992447 HC_gene_3758_tx_8 2 - 991073 992447 . 1 1375 0 -chrVII 991073 992635 HC_gene_3758_tx_9 1 - 991073 992635 . 1 1563 0 -chrVII 991073 992691 HC_gene_3758_tx_10 3 - 991073 992691 . 1 1619 0 -chrVII 991073 992806 HC_gene_3758_tx_11 2 - 991073 992806 . 1 1734 0 -chrVII 991073 992921 HC_gene_3758_tx_12 1 - 991073 992921 . 1 1849 0 -chrVII 991073 993400 HC_gene_3758_tx_13 2 - 991073 993400 . 1 2328 0 -chrVII 991073 993470 HC_gene_3758_tx_14 1 - 991073 993470 . 1 2398 0 -chrVII 991073 993526 HC_gene_3758_tx_15 1 - 991073 993526 . 2 1063,1321 0,1133 -chrVII 991073 993526 HC_gene_3758_tx_16 1 - 991073 993526 . 1 2454 0 -chrVII 991073 993680 HC_gene_3758_tx_17 1 - 991073 993680 . 2 2367,174 0,2434 -chrVII 991073 993692 HC_gene_3758_tx_18 19 - 991073 993692 . 1 2620 0 -chrVII 992095 992377 HC_gene_3758_tx_19 1 - 992095 992377 . 1 283 0 -chrVII 992095 993526 HC_gene_3758_tx_20 1 - 992095 993526 . 1 1432 0 -chrVII 993702 994114 HC_gene_3759_tx_1 5 - 993702 994114 . 1 413 0 -chrVII 994304 994997 HC_gene_3324_tx_1 4 + 994304 994997 . 1 694 0 -chrVII 994418 994997 HC_gene_3324_tx_2 1 + 994418 994997 . 1 580 0 -chrVII 995247 995695 LC_gene_3760_tx_1 1 - 995247 995695 . 1 449 0 -chrVII 995610 996354 HC_gene_3325_tx_1 3 + 995610 996354 . 1 745 0 -chrVII 995610 996435 HC_gene_3325_tx_2 1 + 995610 996435 . 1 826 0 -chrVII 995610 996460 HC_gene_3325_tx_3 1 + 995610 996460 . 1 851 0 -chrVII 995610 996472 HC_gene_3325_tx_4 1 + 995610 996472 . 1 863 0 -chrVII 995610 996473 HC_gene_3325_tx_5 2 + 995610 996473 . 1 864 0 -chrVII 995610 996619 HC_gene_3325_tx_6 19 + 995610 996619 . 1 1010 0 -chrVII 995610 996619 HC_gene_3325_tx_7 1 + 995610 996619 . 2 603,354 0,656 -chrVII 995610 996698 HC_gene_3325_tx_8 25 + 995610 996698 . 1 1089 0 -chrVII 995885 996633 MC_gene_3761_tx_1 1 - 995885 996633 . 1 749 0 -chrVII 995974 996462 HC_gene_3325_tx_9 1 + 995974 996462 . 1 489 0 -chrVII 995974 996619 HC_gene_3325_tx_10 3 + 995974 996619 . 1 646 0 -chrVII 995974 996698 HC_gene_3325_tx_11 8 + 995974 996698 . 1 725 0 -chrVII 996820 998388 HC_gene_3326_tx_1 1 + 996820 998388 . 2 320,1212 0,357 -chrVII 996820 998388 HC_gene_3326_tx_2 39 + 996820 998388 . 1 1569 0 -chrVII 996820 998388 HC_gene_3326_tx_3 1 + 996820 998388 . 2 868,632 0,937 -chrVII 997474 998513 HC_gene_3762_tx_1 1 - 997474 998513 . 1 1040 0 -chrVII 997544 998513 HC_gene_3762_tx_2 1 - 997544 998513 . 1 970 0 -chrVII 997544 999195 HC_gene_3762_tx_3 2 - 997544 999195 . 1 1652 0 -chrVII 998082 998513 HC_gene_3762_tx_4 5 - 998082 998513 . 1 432 0 -chrVII 998082 998623 HC_gene_3762_tx_5 5 - 998082 998623 . 1 542 0 -chrVII 998082 998724 HC_gene_3762_tx_6 9 - 998082 998724 . 1 643 0 -chrVII 998082 998847 HC_gene_3762_tx_7 1 - 998082 998847 . 1 766 0 -chrVII 998082 999195 HC_gene_3762_tx_8 22 - 998082 999195 . 1 1114 0 -chrVII 998240 998513 HC_gene_3762_tx_14 20 - 998240 998513 . 1 274 0 -chrVII 998240 998623 HC_gene_3762_tx_15 28 - 998240 998623 . 1 384 0 -chrVII 998240 998724 HC_gene_3762_tx_16 55 - 998240 998724 . 1 485 0 -chrVII 998240 998847 HC_gene_3762_tx_20 20 - 998240 998847 . 1 608 0 -chrVII 998240 999195 HC_gene_3762_tx_9 251 - 998240 999195 . 1 956 0 -chrVII 998316 998513 HC_gene_3762_tx_21 1 - 998316 998513 . 1 198 0 -chrVII 998316 998724 HC_gene_3762_tx_17 4 - 998316 998724 . 1 409 0 -chrVII 998316 999195 HC_gene_3762_tx_10 4 - 998316 999195 . 1 880 0 -chrVII 998317 999195 HC_gene_3762_tx_11 3 - 998317 999195 . 1 879 0 -chrVII 998318 999195 HC_gene_3762_tx_12 1 - 998318 999195 . 1 878 0 -chrVII 998319 998724 HC_gene_3762_tx_18 1 - 998319 998724 . 1 406 0 -chrVII 998319 999195 HC_gene_3762_tx_13 3 - 998319 999195 . 1 877 0 -chrVII 998320 998724 HC_gene_3762_tx_19 1 - 998320 998724 . 1 405 0 -chrVII 999623 999952 HC_gene_3763_tx_1 12 - 999623 999952 . 1 330 0 -chrVII 999623 1000289 HC_gene_3763_tx_2 4 - 999623 1000289 . 1 667 0 -chrVII 999729 999952 HC_gene_3763_tx_4 3 - 999729 999952 . 1 224 0 -chrVII 999729 1000289 HC_gene_3763_tx_3 4 - 999729 1000289 . 1 561 0 -chrVII 1000667 1000820 MC_gene_3327_tx_1 1 + 1000667 1000820 . 1 154 0 -chrVII 1000889 1002384 HC_gene_3328_tx_1 665 + 1000889 1002384 . 1 1496 0 -chrVII 1001012 1002384 HC_gene_3328_tx_2 112 + 1001012 1002384 . 1 1373 0 -chrVII 1001266 1002384 HC_gene_3328_tx_3 69 + 1001266 1002384 . 1 1119 0 -chrVII 1001455 1002384 HC_gene_3328_tx_4 71 + 1001455 1002384 . 1 930 0 -chrVII 1001695 1002384 HC_gene_3328_tx_5 216 + 1001695 1002384 . 1 690 0 -chrVII 1001837 1002384 HC_gene_3328_tx_6 94 + 1001837 1002384 . 1 548 0 -chrVII 1002032 1002384 HC_gene_3328_tx_7 126 + 1002032 1002384 . 1 353 0 -chrVII 1002465 1003147 HC_gene_3764_tx_1 11 - 1002465 1003147 . 1 683 0 -chrVII 1002465 1004036 HC_gene_3764_tx_2 48 - 1002465 1004036 . 1 1572 0 -chrVII 1002465 1004036 HC_gene_3764_tx_3 1 - 1002465 1004036 . 2 772,730 0,842 -chrVII 1002465 1004036 HC_gene_3764_tx_4 1 - 1002465 1004036 . 2 231,1231 0,341 -chrVII 1002549 1003011 MC_gene_3329_tx_1 1 + 1002549 1003011 . 1 463 0 -chrVII 1004429 1006216 HC_gene_3330_tx_1 1 + 1004429 1006216 . 1 1788 0 -chrVII 1004572 1006216 HC_gene_3330_tx_2 5 + 1004572 1006216 . 1 1645 0 -chrVII 1006124 1007416 HC_gene_3765_tx_1 71 - 1006124 1007416 . 1 1293 0 -chrVII 1006124 1007416 HC_gene_3765_tx_2 1 - 1006124 1007416 . 2 789,291 0,1002 -chrVII 1007563 1008572 HC_gene_3766_tx_1 5 - 1007563 1008572 . 1 1010 0 -chrVII 1007563 1008880 HC_gene_3766_tx_2 4 - 1007563 1008880 . 1 1318 0 -chrVII 1007563 1009026 HC_gene_3766_tx_3 2 - 1007563 1009026 . 1 1464 0 -chrVII 1007563 1009159 HC_gene_3766_tx_4 2 - 1007563 1009159 . 1 1597 0 -chrVII 1007563 1010811 HC_gene_3766_tx_5 7 - 1007563 1010811 . 1 3249 0 -chrVII 1008229 1008959 LC_gene_3331_tx_1 1 + 1008229 1008959 . 1 731 0 -chrVII 1011586 1011785 MC_gene_3332_tx_1 1 + 1011586 1011785 . 1 200 0 -chrVII 1011586 1012288 MC_gene_3767_tx_1 1 - 1011586 1012288 . 1 703 0 -chrVII 1011937 1012295 HC_gene_3333_tx_1 1 + 1011937 1012295 . 1 359 0 -chrVII 1011939 1012309 HC_gene_3333_tx_2 1 + 1011939 1012309 . 1 371 0 -chrVII 1011939 1012312 HC_gene_3333_tx_3 1 + 1011939 1012312 . 1 374 0 -chrVII 1011939 1012320 HC_gene_3333_tx_4 1 + 1011939 1012320 . 1 382 0 -chrVII 1012110 1012292 MC_gene_3768_tx_1 1 - 1012110 1012292 . 1 183 0 -chrVII 1012286 1014212 HC_gene_3334_tx_1 66 + 1012286 1014212 . 1 1927 0 -chrVII 1012286 1014212 HC_gene_3334_tx_2 1 + 1012286 1014212 . 2 550,1312 0,615 -chrVII 1012286 1014325 HC_gene_3334_tx_3 1 + 1012286 1014325 . 1 2040 0 -chrVII 1012486 1014212 HC_gene_3334_tx_4 127 + 1012486 1014212 . 1 1727 0 -chrVII 1012486 1014212 HC_gene_3334_tx_5 1 + 1012486 1014212 . 2 1073,542 0,1185 -chrVII 1012486 1014212 HC_gene_3334_tx_6 1 + 1012486 1014212 . 2 1118,324 0,1403 -chrVII 1012486 1014212 HC_gene_3334_tx_7 1 + 1012486 1014212 . 2 966,655 0,1072 -chrVII 1012486 1014325 HC_gene_3334_tx_8 2 + 1012486 1014325 . 1 1840 0 -chrVII 1013649 1014212 HC_gene_3334_tx_9 30 + 1013649 1014212 . 1 564 0 -chrVII 1014139 1016787 HC_gene_3769_tx_1 1 - 1014139 1016787 . 1 2649 0 -chrVII 1014228 1014709 HC_gene_3769_tx_3 17 - 1014228 1014709 . 1 482 0 -chrVII 1014228 1015156 HC_gene_3769_tx_4 5 - 1014228 1015156 . 1 929 0 -chrVII 1014228 1015455 HC_gene_3769_tx_5 1 - 1014228 1015455 . 1 1228 0 -chrVII 1014228 1015872 HC_gene_3769_tx_6 5 - 1014228 1015872 . 1 1645 0 -chrVII 1014228 1015926 HC_gene_3769_tx_7 1 - 1014228 1015926 . 1 1699 0 -chrVII 1014228 1016787 HC_gene_3769_tx_2 10 - 1014228 1016787 . 1 2560 0 -chrVII 1016865 1017413 HC_gene_3770_tx_1 15 - 1016865 1017413 . 1 549 0 -chrVII 1016865 1017496 HC_gene_3770_tx_2 10 - 1016865 1017496 . 1 632 0 -chrVII 1016865 1017789 HC_gene_3770_tx_3 1 - 1016865 1017789 . 2 595,66 0,859 -chrVII 1016865 1017789 HC_gene_3770_tx_4 62 - 1016865 1017789 . 1 925 0 -chrVII 1016865 1017789 HC_gene_3770_tx_5 1 - 1016865 1017789 . 2 609,145 0,780 -chrVII 1017905 1018401 HC_gene_3771_tx_1 8 - 1017905 1018401 . 1 497 0 -chrVII 1017905 1019250 HC_gene_3771_tx_2 14 - 1017905 1019250 . 1 1346 0 -chrVII 1017944 1019553 LC_gene_3335_tx_1 1 + 1017944 1019553 . 1 1610 0 -chrVII 1019308 1020058 HC_gene_3772_tx_1 1 - 1019308 1020058 . 1 751 0 -chrVII 1019308 1021871 HC_gene_3772_tx_52 1 - 1019308 1021871 . 1 2564 0 -chrVII 1019309 1021871 HC_gene_3772_tx_53 1 - 1019309 1021871 . 1 2563 0 -chrVII 1019336 1020058 HC_gene_3772_tx_2 1 - 1019336 1020058 . 1 723 0 -chrVII 1019340 1020058 HC_gene_3772_tx_3 1 - 1019340 1020058 . 1 719 0 -chrVII 1019343 1020058 HC_gene_3772_tx_4 1 - 1019343 1020058 . 1 716 0 -chrVII 1019346 1022374 HC_gene_3772_tx_54 1 - 1019346 1022374 . 1 3029 0 -chrVII 1019347 1021871 HC_gene_3772_tx_55 1 - 1019347 1021871 . 1 2525 0 -chrVII 1019350 1019941 HC_gene_3772_tx_5 2 - 1019350 1019941 . 1 592 0 -chrVII 1019350 1020262 HC_gene_3772_tx_130 1 - 1019350 1020262 . 1 913 0 -chrVII 1019356 1019941 HC_gene_3772_tx_6 2 - 1019356 1019941 . 1 586 0 -chrVII 1019356 1020058 HC_gene_3772_tx_7 3 - 1019356 1020058 . 1 703 0 -chrVII 1019356 1020262 HC_gene_3772_tx_131 1 - 1019356 1020262 . 1 907 0 -chrVII 1019356 1020554 HC_gene_3772_tx_149 2 - 1019356 1020554 . 1 1199 0 -chrVII 1019356 1021633 HC_gene_3772_tx_56 1 - 1019356 1021633 . 1 2278 0 -chrVII 1019356 1021871 HC_gene_3772_tx_57 3 - 1019356 1021871 . 1 2516 0 -chrVII 1019357 1021633 HC_gene_3772_tx_58 1 - 1019357 1021633 . 1 2277 0 -chrVII 1019359 1019941 HC_gene_3772_tx_8 2 - 1019359 1019941 . 1 583 0 -chrVII 1019359 1020058 HC_gene_3772_tx_9 2 - 1019359 1020058 . 1 700 0 -chrVII 1019359 1020262 HC_gene_3772_tx_132 1 - 1019359 1020262 . 1 904 0 -chrVII 1019359 1021158 HC_gene_3772_tx_59 1 - 1019359 1021158 . 1 1800 0 -chrVII 1019359 1021871 HC_gene_3772_tx_60 2 - 1019359 1021871 . 1 2513 0 -chrVII 1019360 1019941 HC_gene_3772_tx_10 2 - 1019360 1019941 . 1 582 0 -chrVII 1019360 1020554 HC_gene_3772_tx_150 1 - 1019360 1020554 . 1 1195 0 -chrVII 1019360 1021871 HC_gene_3772_tx_61 1 - 1019360 1021871 . 1 2512 0 -chrVII 1019362 1020262 HC_gene_3772_tx_133 1 - 1019362 1020262 . 1 901 0 -chrVII 1019362 1020554 HC_gene_3772_tx_151 1 - 1019362 1020554 . 1 1193 0 -chrVII 1019362 1021871 HC_gene_3772_tx_62 2 - 1019362 1021871 . 1 2510 0 -chrVII 1019363 1021871 HC_gene_3772_tx_63 1 - 1019363 1021871 . 1 2509 0 -chrVII 1019364 1020058 HC_gene_3772_tx_11 1 - 1019364 1020058 . 1 695 0 -chrVII 1019364 1021547 HC_gene_3772_tx_64 1 - 1019364 1021547 . 1 2184 0 -chrVII 1019365 1021871 HC_gene_3772_tx_65 1 - 1019365 1021871 . 1 2507 0 -chrVII 1019366 1021871 HC_gene_3772_tx_66 2 - 1019366 1021871 . 1 2506 0 -chrVII 1019367 1020554 HC_gene_3772_tx_152 1 - 1019367 1020554 . 1 1188 0 -chrVII 1019369 1019941 HC_gene_3772_tx_12 1 - 1019369 1019941 . 1 573 0 -chrVII 1019371 1020554 HC_gene_3772_tx_153 1 - 1019371 1020554 . 1 1184 0 -chrVII 1019372 1020058 HC_gene_3772_tx_13 1 - 1019372 1020058 . 1 687 0 -chrVII 1019372 1021871 HC_gene_3772_tx_67 1 - 1019372 1021871 . 1 2500 0 -chrVII 1019373 1021871 HC_gene_3772_tx_68 1 - 1019373 1021871 . 1 2499 0 -chrVII 1019375 1021871 HC_gene_3772_tx_69 1 - 1019375 1021871 . 1 2497 0 -chrVII 1019376 1020058 HC_gene_3772_tx_14 2 - 1019376 1020058 . 1 683 0 -chrVII 1019376 1021871 HC_gene_3772_tx_70 1 - 1019376 1021871 . 1 2496 0 -chrVII 1019377 1021633 HC_gene_3772_tx_71 1 - 1019377 1021633 . 1 2257 0 -chrVII 1019381 1021871 HC_gene_3772_tx_72 1 - 1019381 1021871 . 1 2491 0 -chrVII 1019383 1020058 HC_gene_3772_tx_15 1 - 1019383 1020058 . 1 676 0 -chrVII 1019388 1021158 HC_gene_3772_tx_73 1 - 1019388 1021158 . 1 1771 0 -chrVII 1019388 1021871 HC_gene_3772_tx_74 1 - 1019388 1021871 . 1 2484 0 -chrVII 1019389 1021871 HC_gene_3772_tx_75 1 - 1019389 1021871 . 1 2483 0 -chrVII 1019390 1020058 HC_gene_3772_tx_16 1 - 1019390 1020058 . 1 669 0 -chrVII 1019390 1020487 HC_gene_3772_tx_154 1 - 1019390 1020487 . 1 1098 0 -chrVII 1019390 1020554 HC_gene_3772_tx_155 1 - 1019390 1020554 . 1 1165 0 -chrVII 1019391 1020058 HC_gene_3772_tx_17 1 - 1019391 1020058 . 1 668 0 -chrVII 1019392 1021871 HC_gene_3772_tx_76 1 - 1019392 1021871 . 1 2480 0 -chrVII 1019393 1019941 HC_gene_3772_tx_18 3 - 1019393 1019941 . 1 549 0 -chrVII 1019393 1020058 HC_gene_3772_tx_19 6 - 1019393 1020058 . 1 666 0 -chrVII 1019393 1020262 HC_gene_3772_tx_134 4 - 1019393 1020262 . 1 870 0 -chrVII 1019393 1020554 HC_gene_3772_tx_156 2 - 1019393 1020554 . 1 1162 0 -chrVII 1019393 1021871 HC_gene_3772_tx_77 4 - 1019393 1021871 . 1 2479 0 -chrVII 1019394 1019941 HC_gene_3772_tx_20 3 - 1019394 1019941 . 1 548 0 -chrVII 1019394 1020058 HC_gene_3772_tx_21 2 - 1019394 1020058 . 1 665 0 -chrVII 1019394 1020262 HC_gene_3772_tx_135 1 - 1019394 1020262 . 1 869 0 -chrVII 1019394 1020554 HC_gene_3772_tx_157 1 - 1019394 1020554 . 1 1161 0 -chrVII 1019394 1021871 HC_gene_3772_tx_78 5 - 1019394 1021871 . 1 2478 0 -chrVII 1019395 1020058 HC_gene_3772_tx_22 1 - 1019395 1020058 . 1 664 0 -chrVII 1019395 1020262 HC_gene_3772_tx_136 2 - 1019395 1020262 . 1 868 0 -chrVII 1019395 1020554 HC_gene_3772_tx_158 1 - 1019395 1020554 . 1 1160 0 -chrVII 1019395 1021158 HC_gene_3772_tx_79 1 - 1019395 1021158 . 1 1764 0 -chrVII 1019395 1021871 HC_gene_3772_tx_80 1 - 1019395 1021871 . 1 2477 0 -chrVII 1019398 1021633 HC_gene_3772_tx_81 1 - 1019398 1021633 . 1 2236 0 -chrVII 1019401 1020058 HC_gene_3772_tx_23 1 - 1019401 1020058 . 1 658 0 -chrVII 1019401 1020262 HC_gene_3772_tx_137 1 - 1019401 1020262 . 1 862 0 -chrVII 1019402 1019941 HC_gene_3772_tx_24 2 - 1019402 1019941 . 1 540 0 -chrVII 1019402 1020058 HC_gene_3772_tx_25 2 - 1019402 1020058 . 1 657 0 -chrVII 1019402 1020262 HC_gene_3772_tx_138 2 - 1019402 1020262 . 1 861 0 -chrVII 1019402 1021547 HC_gene_3772_tx_82 1 - 1019402 1021547 . 1 2146 0 -chrVII 1019402 1021633 HC_gene_3772_tx_83 1 - 1019402 1021633 . 1 2232 0 -chrVII 1019402 1021871 HC_gene_3772_tx_84 3 - 1019402 1021871 . 1 2470 0 -chrVII 1019402 1022374 HC_gene_3772_tx_85 1 - 1019402 1022374 . 1 2973 0 -chrVII 1019403 1019941 HC_gene_3772_tx_26 1 - 1019403 1019941 . 1 539 0 -chrVII 1019403 1020058 HC_gene_3772_tx_27 1 - 1019403 1020058 . 1 656 0 -chrVII 1019404 1020058 HC_gene_3772_tx_28 2 - 1019404 1020058 . 1 655 0 -chrVII 1019404 1020262 HC_gene_3772_tx_139 2 - 1019404 1020262 . 1 859 0 -chrVII 1019404 1020554 HC_gene_3772_tx_159 1 - 1019404 1020554 . 1 1151 0 -chrVII 1019404 1021547 HC_gene_3772_tx_86 1 - 1019404 1021547 . 1 2144 0 -chrVII 1019404 1021633 HC_gene_3772_tx_87 1 - 1019404 1021633 . 1 2230 0 -chrVII 1019404 1021871 HC_gene_3772_tx_88 3 - 1019404 1021871 . 1 2468 0 -chrVII 1019405 1019941 HC_gene_3772_tx_29 3 - 1019405 1019941 . 1 537 0 -chrVII 1019405 1020058 HC_gene_3772_tx_30 3 - 1019405 1020058 . 1 654 0 -chrVII 1019405 1020262 HC_gene_3772_tx_140 3 - 1019405 1020262 . 1 858 0 -chrVII 1019405 1020487 HC_gene_3772_tx_160 1 - 1019405 1020487 . 1 1083 0 -chrVII 1019405 1020554 HC_gene_3772_tx_161 2 - 1019405 1020554 . 1 1150 0 -chrVII 1019405 1021158 HC_gene_3772_tx_89 2 - 1019405 1021158 . 1 1754 0 -chrVII 1019405 1021633 HC_gene_3772_tx_90 1 - 1019405 1021633 . 1 2229 0 -chrVII 1019405 1021871 HC_gene_3772_tx_91 9 - 1019405 1021871 . 1 2467 0 -chrVII 1019405 1022374 HC_gene_3772_tx_92 1 - 1019405 1022374 . 1 2970 0 -chrVII 1019407 1020058 HC_gene_3772_tx_31 1 - 1019407 1020058 . 1 652 0 -chrVII 1019407 1021871 HC_gene_3772_tx_93 2 - 1019407 1021871 . 1 2465 0 -chrVII 1019408 1019941 HC_gene_3772_tx_32 1 - 1019408 1019941 . 1 534 0 -chrVII 1019408 1020058 HC_gene_3772_tx_33 1 - 1019408 1020058 . 1 651 0 -chrVII 1019408 1020262 HC_gene_3772_tx_141 1 - 1019408 1020262 . 1 855 0 -chrVII 1019408 1021871 HC_gene_3772_tx_94 1 - 1019408 1021871 . 1 2464 0 -chrVII 1019409 1019941 HC_gene_3772_tx_34 2 - 1019409 1019941 . 1 533 0 -chrVII 1019409 1020058 HC_gene_3772_tx_35 1 - 1019409 1020058 . 1 650 0 -chrVII 1019409 1020262 HC_gene_3772_tx_142 5 - 1019409 1020262 . 1 854 0 -chrVII 1019409 1021547 HC_gene_3772_tx_95 1 - 1019409 1021547 . 1 2139 0 -chrVII 1019409 1021871 HC_gene_3772_tx_96 2 - 1019409 1021871 . 1 2463 0 -chrVII 1019410 1020058 HC_gene_3772_tx_36 1 - 1019410 1020058 . 1 649 0 -chrVII 1019410 1020554 HC_gene_3772_tx_162 1 - 1019410 1020554 . 1 1145 0 -chrVII 1019410 1021633 HC_gene_3772_tx_97 1 - 1019410 1021633 . 1 2224 0 -chrVII 1019410 1021871 HC_gene_3772_tx_98 1 - 1019410 1021871 . 1 2462 0 -chrVII 1019411 1020262 HC_gene_3772_tx_143 1 - 1019411 1020262 . 1 852 0 -chrVII 1019412 1020058 HC_gene_3772_tx_37 1 - 1019412 1020058 . 1 647 0 -chrVII 1019412 1021871 HC_gene_3772_tx_99 2 - 1019412 1021871 . 1 2460 0 -chrVII 1019413 1020058 HC_gene_3772_tx_38 1 - 1019413 1020058 . 1 646 0 -chrVII 1019413 1021871 HC_gene_3772_tx_100 1 - 1019413 1021871 . 2 1688,210 0,2249 -chrVII 1019414 1020058 HC_gene_3772_tx_39 3 - 1019414 1020058 . 1 645 0 -chrVII 1019414 1020262 HC_gene_3772_tx_144 2 - 1019414 1020262 . 1 849 0 -chrVII 1019414 1021871 HC_gene_3772_tx_101 1 - 1019414 1021871 . 1 2458 0 -chrVII 1019414 1021871 HC_gene_3772_tx_102 1 - 1019414 1021871 . 2 562,772 0,1686 -chrVII 1019415 1021871 HC_gene_3772_tx_103 3 - 1019415 1021871 . 1 2457 0 -chrVII 1019416 1020262 HC_gene_3772_tx_145 1 - 1019416 1020262 . 1 847 0 -chrVII 1019416 1021633 HC_gene_3772_tx_104 1 - 1019416 1021633 . 1 2218 0 -chrVII 1019416 1021871 HC_gene_3772_tx_105 2 - 1019416 1021871 . 1 2456 0 -chrVII 1019417 1021871 HC_gene_3772_tx_106 2 - 1019417 1021871 . 1 2455 0 -chrVII 1019418 1020058 HC_gene_3772_tx_40 2 - 1019418 1020058 . 1 641 0 -chrVII 1019418 1021633 HC_gene_3772_tx_107 1 - 1019418 1021633 . 1 2216 0 -chrVII 1019418 1021871 HC_gene_3772_tx_108 3 - 1019418 1021871 . 1 2454 0 -chrVII 1019419 1020262 HC_gene_3772_tx_146 1 - 1019419 1020262 . 1 844 0 -chrVII 1019420 1021871 HC_gene_3772_tx_109 1 - 1019420 1021871 . 1 2452 0 -chrVII 1019421 1020487 HC_gene_3772_tx_163 1 - 1019421 1020487 . 1 1067 0 -chrVII 1019421 1021871 HC_gene_3772_tx_110 1 - 1019421 1021871 . 1 2451 0 -chrVII 1019422 1021871 HC_gene_3772_tx_111 2 - 1019422 1021871 . 1 2450 0 -chrVII 1019423 1020487 HC_gene_3772_tx_164 2 - 1019423 1020487 . 1 1065 0 -chrVII 1019425 1021871 HC_gene_3772_tx_112 1 - 1019425 1021871 . 1 2447 0 -chrVII 1019427 1020058 HC_gene_3772_tx_41 2 - 1019427 1020058 . 1 632 0 -chrVII 1019427 1020554 HC_gene_3772_tx_165 1 - 1019427 1020554 . 1 1128 0 -chrVII 1019427 1021871 HC_gene_3772_tx_113 1 - 1019427 1021871 . 1 2445 0 -chrVII 1019429 1020058 HC_gene_3772_tx_42 1 - 1019429 1020058 . 1 630 0 -chrVII 1019429 1021547 HC_gene_3772_tx_114 1 - 1019429 1021547 . 1 2119 0 -chrVII 1019431 1019941 HC_gene_3772_tx_43 1 - 1019431 1019941 . 1 511 0 -chrVII 1019433 1020058 HC_gene_3772_tx_44 1 - 1019433 1020058 . 1 626 0 -chrVII 1019433 1020554 HC_gene_3772_tx_166 1 - 1019433 1020554 . 1 1122 0 -chrVII 1019434 1020262 HC_gene_3772_tx_147 1 - 1019434 1020262 . 1 829 0 -chrVII 1019435 1021871 HC_gene_3772_tx_115 1 - 1019435 1021871 . 2 50,2332 0,105 -chrVII 1019437 1020058 HC_gene_3772_tx_45 1 - 1019437 1020058 . 1 622 0 -chrVII 1019437 1020554 HC_gene_3772_tx_167 1 - 1019437 1020554 . 1 1118 0 -chrVII 1019437 1021871 HC_gene_3772_tx_116 1 - 1019437 1021871 . 1 2435 0 -chrVII 1019437 1022374 HC_gene_3772_tx_117 1 - 1019437 1022374 . 1 2938 0 -chrVII 1019438 1021871 HC_gene_3772_tx_118 2 - 1019438 1021871 . 1 2434 0 -chrVII 1019438 1021871 HC_gene_3772_tx_119 1 - 1019438 1021871 . 2 988,285 0,2149 -chrVII 1019440 1020058 HC_gene_3772_tx_46 1 - 1019440 1020058 . 1 619 0 -chrVII 1019440 1021871 HC_gene_3772_tx_120 1 - 1019440 1021871 . 1 2432 0 -chrVII 1019448 1021871 HC_gene_3772_tx_121 1 - 1019448 1021871 . 1 2424 0 -chrVII 1019455 1021871 HC_gene_3772_tx_122 1 - 1019455 1021871 . 1 2417 0 -chrVII 1019456 1020058 HC_gene_3772_tx_47 1 - 1019456 1020058 . 1 603 0 -chrVII 1019456 1021871 HC_gene_3772_tx_123 1 - 1019456 1021871 . 1 2416 0 -chrVII 1019459 1021871 HC_gene_3772_tx_124 1 - 1019459 1021871 . 1 2413 0 -chrVII 1019460 1020487 HC_gene_3772_tx_168 1 - 1019460 1020487 . 1 1028 0 -chrVII 1019460 1020554 HC_gene_3772_tx_169 1 - 1019460 1020554 . 1 1095 0 -chrVII 1019468 1021871 HC_gene_3772_tx_125 1 - 1019468 1021871 . 1 2404 0 -chrVII 1019469 1021871 HC_gene_3772_tx_126 1 - 1019469 1021871 . 1 2403 0 -chrVII 1019470 1019941 HC_gene_3772_tx_48 1 - 1019470 1019941 . 1 472 0 -chrVII 1019470 1020058 HC_gene_3772_tx_49 2 - 1019470 1020058 . 1 589 0 -chrVII 1019471 1020487 HC_gene_3772_tx_170 1 - 1019471 1020487 . 1 1017 0 -chrVII 1019472 1019941 HC_gene_3772_tx_50 3 - 1019472 1019941 . 1 470 0 -chrVII 1019472 1020058 HC_gene_3772_tx_51 10 - 1019472 1020058 . 1 587 0 -chrVII 1019472 1020262 HC_gene_3772_tx_148 2 - 1019472 1020262 . 1 791 0 -chrVII 1019472 1020487 HC_gene_3772_tx_171 1 - 1019472 1020487 . 1 1016 0 -chrVII 1019472 1020554 HC_gene_3772_tx_172 1 - 1019472 1020554 . 1 1083 0 -chrVII 1019472 1021158 HC_gene_3772_tx_127 2 - 1019472 1021158 . 1 1687 0 -chrVII 1019472 1021633 HC_gene_3772_tx_128 1 - 1019472 1021633 . 1 2162 0 -chrVII 1019472 1021871 HC_gene_3772_tx_129 6 - 1019472 1021871 . 1 2400 0 -chrVII 1022591 1024912 HC_gene_3336_tx_1 5 + 1022591 1024912 . 1 2322 0 -chrVII 1022591 1024912 HC_gene_3336_tx_2 1 + 1022591 1024912 . 2 1295,978 0,1344 -chrVII 1022591 1024993 HC_gene_3336_tx_3 9 + 1022591 1024993 . 1 2403 0 -chrVII 1023681 1024912 HC_gene_3336_tx_4 2 + 1023681 1024912 . 1 1232 0 -chrVII 1023681 1024993 HC_gene_3336_tx_5 2 + 1023681 1024993 . 1 1313 0 -chrVII 1023935 1024415 MC_gene_3773_tx_1 1 - 1023935 1024415 . 1 481 0 -chrVII 1024445 1025576 HC_gene_3774_tx_1 1 - 1024445 1025576 . 1 1132 0 -chrVII 1024445 1025899 HC_gene_3774_tx_2 1 - 1024445 1025899 . 1 1455 0 -chrVII 1024445 1027036 HC_gene_3774_tx_3 1 - 1024445 1027036 . 1 2592 0 -chrVII 1024791 1025518 HC_gene_3774_tx_8 1 - 1024791 1025518 . 1 728 0 -chrVII 1024791 1025637 HC_gene_3774_tx_9 3 - 1024791 1025637 . 1 847 0 -chrVII 1024791 1025899 HC_gene_3774_tx_13 9 - 1024791 1025899 . 1 1109 0 -chrVII 1024791 1026697 HC_gene_3774_tx_4 1 - 1024791 1026697 . 1 1907 0 -chrVII 1024791 1027036 HC_gene_3774_tx_5 1 - 1024791 1027036 . 1 2246 0 -chrVII 1024935 1025518 HC_gene_3774_tx_10 24 - 1024935 1025518 . 1 584 0 -chrVII 1024935 1025576 HC_gene_3774_tx_11 1 - 1024935 1025576 . 1 642 0 -chrVII 1024935 1025637 HC_gene_3774_tx_12 31 - 1024935 1025637 . 1 703 0 -chrVII 1024935 1025899 HC_gene_3774_tx_14 119 - 1024935 1025899 . 1 965 0 -chrVII 1024935 1025899 HC_gene_3774_tx_15 1 - 1024935 1025899 . 2 673,225 0,740 -chrVII 1024935 1025899 HC_gene_3774_tx_16 2 - 1024935 1025899 . 2 43,872 0,93 -chrVII 1024935 1025899 HC_gene_3774_tx_17 1 - 1024935 1025899 . 2 27,870 0,95 -chrVII 1024935 1026697 HC_gene_3774_tx_6 8 - 1024935 1026697 . 1 1763 0 -chrVII 1024935 1027036 HC_gene_3774_tx_7 2 - 1024935 1027036 . 1 2102 0 -chrVII 1025796 1026697 HC_gene_3774_tx_18 7 - 1025796 1026697 . 1 902 0 -chrVII 1025878 1026653 HC_gene_3774_tx_19 1 - 1025878 1026653 . 1 776 0 -chrVII 1025878 1026654 HC_gene_3774_tx_20 1 - 1025878 1026654 . 1 777 0 -chrVII 1025878 1026656 HC_gene_3774_tx_21 1 - 1025878 1026656 . 1 779 0 -chrVII 1025878 1026697 HC_gene_3774_tx_22 10 - 1025878 1026697 . 1 820 0 -chrVII 1025878 1027036 HC_gene_3774_tx_23 1 - 1025878 1027036 . 1 1159 0 -chrVII 1026135 1026535 MC_gene_3337_tx_1 1 + 1026135 1026535 . 1 401 0 -chrVII 1026878 1031584 HC_gene_3338_tx_1 1 + 1026878 1031584 . 1 4707 0 -chrVII 1027253 1031584 HC_gene_3338_tx_2 1 + 1027253 1031584 . 2 1099,3089 0,1243 -chrVII 1027253 1031584 HC_gene_3338_tx_3 4 + 1027253 1031584 . 1 4332 0 -chrVII 1027369 1031584 HC_gene_3338_tx_4 1 + 1027369 1031584 . 1 4216 0 -chrVII 1027556 1031584 HC_gene_3338_tx_5 1 + 1027556 1031584 . 1 4029 0 -chrVII 1027631 1031584 HC_gene_3338_tx_6 1 + 1027631 1031584 . 1 3954 0 -chrVII 1028369 1031584 HC_gene_3338_tx_7 2 + 1028369 1031584 . 1 3216 0 -chrVII 1030718 1031584 HC_gene_3338_tx_8 7 + 1030718 1031584 . 1 867 0 -chrVII 1030718 1031584 HC_gene_3338_tx_9 1 + 1030718 1031584 . 2 730,71 0,796 -chrVII 1030975 1031584 HC_gene_3338_tx_10 10 + 1030975 1031584 . 1 610 0 -chrVII 1031767 1034573 HC_gene_3339_tx_1 1 + 1031767 1034573 . 1 2807 0 -chrVII 1031767 1037824 HC_gene_3339_tx_2 1 + 1031767 1037824 . 1 6058 0 -chrVII 1037695 1038511 HC_gene_3775_tx_1 132 - 1037695 1038511 . 1 817 0 -chrVII 1037695 1038511 HC_gene_3775_tx_2 1 - 1037695 1038511 . 2 261,489 0,328 -chrVII 1037695 1038642 HC_gene_3775_tx_3 1 - 1037695 1038642 . 1 948 0 -chrVII 1038839 1039223 LC_gene_3340_tx_1 1 + 1038839 1039223 . 1 385 0 -chrVII 1039806 1040593 HC_gene_3776_tx_1 4 - 1039806 1040593 . 1 788 0 -chrVII 1039806 1043112 HC_gene_3776_tx_2 5 - 1039806 1043112 . 1 3307 0 -chrVII 1039806 1043112 HC_gene_3776_tx_3 1 - 1039806 1043112 . 2 2230,1021 0,2286 -chrVII 1043255 1043846 HC_gene_3341_tx_1 222 + 1043255 1043846 . 1 592 0 -chrVII 1043352 1043846 HC_gene_3341_tx_2 6 + 1043352 1043846 . 1 495 0 -chrVII 1043417 1043846 HC_gene_3341_tx_3 30 + 1043417 1043846 . 1 430 0 -chrVII 1043508 1043846 HC_gene_3341_tx_4 15 + 1043508 1043846 . 1 339 0 -chrVII 1043583 1043846 HC_gene_3341_tx_5 6 + 1043583 1043846 . 1 264 0 -chrVII 1043742 1044134 HC_gene_3777_tx_1 6 - 1043742 1044134 . 1 393 0 -chrVII 1043742 1044768 HC_gene_3777_tx_2 3 - 1043742 1044768 . 1 1027 0 -chrVII 1043742 1045518 HC_gene_3777_tx_3 23 - 1043742 1045518 . 1 1777 0 -chrVII 1045532 1046567 HC_gene_3778_tx_1 2 - 1045532 1046567 . 1 1036 0 -chrVII 1045538 1046567 HC_gene_3778_tx_2 2 - 1045538 1046567 . 1 1030 0 -chrVII 1045540 1046567 HC_gene_3778_tx_3 1 - 1045540 1046567 . 1 1028 0 -chrVII 1045545 1046567 HC_gene_3778_tx_4 5 - 1045545 1046567 . 1 1023 0 -chrVII 1045546 1046567 HC_gene_3778_tx_5 1 - 1045546 1046567 . 1 1022 0 -chrVII 1045547 1046567 HC_gene_3778_tx_6 1 - 1045547 1046567 . 1 1021 0 -chrVII 1045554 1046117 HC_gene_3778_tx_28 1 - 1045554 1046117 . 1 564 0 -chrVII 1045556 1046567 HC_gene_3778_tx_7 2 - 1045556 1046567 . 1 1012 0 -chrVII 1045559 1046117 HC_gene_3778_tx_29 1 - 1045559 1046117 . 1 559 0 -chrVII 1045559 1046567 HC_gene_3778_tx_8 2 - 1045559 1046567 . 1 1009 0 -chrVII 1045561 1046117 HC_gene_3778_tx_30 1 - 1045561 1046117 . 1 557 0 -chrVII 1045561 1046567 HC_gene_3778_tx_9 4 - 1045561 1046567 . 1 1007 0 -chrVII 1045563 1046567 HC_gene_3778_tx_10 1 - 1045563 1046567 . 1 1005 0 -chrVII 1045565 1046567 HC_gene_3778_tx_11 2 - 1045565 1046567 . 1 1003 0 -chrVII 1045569 1046567 HC_gene_3778_tx_12 2 - 1045569 1046567 . 1 999 0 -chrVII 1045572 1046567 HC_gene_3778_tx_13 1 - 1045572 1046567 . 1 996 0 -chrVII 1045573 1046567 HC_gene_3778_tx_14 1 - 1045573 1046567 . 1 995 0 -chrVII 1045582 1046567 HC_gene_3778_tx_15 1 - 1045582 1046567 . 1 986 0 -chrVII 1045583 1046567 HC_gene_3778_tx_16 2 - 1045583 1046567 . 1 985 0 -chrVII 1045586 1046117 HC_gene_3778_tx_31 1 - 1045586 1046117 . 1 532 0 -chrVII 1045586 1046567 HC_gene_3778_tx_17 2 - 1045586 1046567 . 1 982 0 -chrVII 1045589 1046567 HC_gene_3778_tx_18 3 - 1045589 1046567 . 1 979 0 -chrVII 1045591 1046567 HC_gene_3778_tx_19 1 - 1045591 1046567 . 1 977 0 -chrVII 1045592 1046567 HC_gene_3778_tx_20 1 - 1045592 1046567 . 1 976 0 -chrVII 1045594 1046567 HC_gene_3778_tx_21 1 - 1045594 1046567 . 1 974 0 -chrVII 1045596 1046567 HC_gene_3778_tx_22 3 - 1045596 1046567 . 1 972 0 -chrVII 1045597 1046567 HC_gene_3778_tx_23 1 - 1045597 1046567 . 1 971 0 -chrVII 1045602 1046567 HC_gene_3778_tx_24 1 - 1045602 1046567 . 1 966 0 -chrVII 1045603 1046567 HC_gene_3778_tx_25 1 - 1045603 1046567 . 1 965 0 -chrVII 1045605 1046567 HC_gene_3778_tx_26 1 - 1045605 1046567 . 1 963 0 -chrVII 1045606 1046567 HC_gene_3778_tx_27 2 - 1045606 1046567 . 1 962 0 -chrVII 1045769 1046267 LC_gene_3342_tx_1 1 + 1045769 1046267 . 1 499 0 -chrVII 1046720 1048623 HC_gene_3343_tx_1 7 + 1046720 1048623 . 1 1904 0 -chrVII 1048335 1049112 HC_gene_3779_tx_1 1 - 1048335 1049112 . 1 778 0 -chrVII 1048335 1049555 HC_gene_3779_tx_2 1 - 1048335 1049555 . 1 1221 0 -chrVII 1048335 1049730 HC_gene_3779_tx_3 1 - 1048335 1049730 . 1 1396 0 -chrVII 1048335 1050054 HC_gene_3779_tx_4 5 - 1048335 1050054 . 1 1720 0 -chrVII 1048558 1049112 HC_gene_3779_tx_66 127 - 1048558 1049112 . 1 555 0 -chrVII 1048558 1049112 HC_gene_3779_tx_67 1 - 1048558 1049112 . 2 162,277 0,278 -chrVII 1048558 1049205 HC_gene_3779_tx_68 101 - 1048558 1049205 . 1 648 0 -chrVII 1048558 1049309 HC_gene_3779_tx_69 106 - 1048558 1049309 . 1 752 0 -chrVII 1048558 1049309 HC_gene_3779_tx_70 1 - 1048558 1049309 . 2 279,366 0,386 -chrVII 1048558 1049309 HC_gene_3779_tx_71 1 - 1048558 1049309 . 2 392,195 0,557 -chrVII 1048558 1049309 HC_gene_3779_tx_72 1 - 1048558 1049309 . 2 97,612 0,140 -chrVII 1048558 1049555 HC_gene_3779_tx_5 175 - 1048558 1049555 . 1 998 0 -chrVII 1048558 1049555 HC_gene_3779_tx_6 1 - 1048558 1049555 . 2 537,297 0,701 -chrVII 1048558 1049555 HC_gene_3779_tx_7 1 - 1048558 1049555 . 2 610,222 0,776 -chrVII 1048558 1049555 HC_gene_3779_tx_8 1 - 1048558 1049555 . 2 306,620 0,378 -chrVII 1048558 1049670 HC_gene_3779_tx_9 29 - 1048558 1049670 . 1 1113 0 -chrVII 1048558 1049730 HC_gene_3779_tx_10 91 - 1048558 1049730 . 1 1173 0 -chrVII 1048558 1050054 HC_gene_3779_tx_11 789 - 1048558 1050054 . 1 1497 0 -chrVII 1048558 1050054 HC_gene_3779_tx_12 1 - 1048558 1050054 . 2 300,1154 0,343 -chrVII 1048558 1050054 HC_gene_3779_tx_13 1 - 1048558 1050054 . 2 697,677 0,820 -chrVII 1048558 1050054 HC_gene_3779_tx_14 1 - 1048558 1050054 . 2 1351,61 0,1436 -chrVII 1048558 1050054 HC_gene_3779_tx_15 1 - 1048558 1050054 . 2 1107,111 0,1386 -chrVII 1048558 1050054 HC_gene_3779_tx_16 1 - 1048558 1050054 . 2 561,862 0,635 -chrVII 1048558 1050054 HC_gene_3779_tx_17 1 - 1048558 1050054 . 2 951,406 0,1091 -chrVII 1048558 1050054 HC_gene_3779_tx_18 1 - 1048558 1050054 . 2 808,301 0,1196 -chrVII 1048558 1050054 HC_gene_3779_tx_19 1 - 1048558 1050054 . 2 1078,319 0,1178 -chrVII 1048558 1050054 HC_gene_3779_tx_20 1 - 1048558 1050054 . 2 1134,256 0,1241 -chrVII 1048558 1050054 HC_gene_3779_tx_21 1 - 1048558 1050054 . 2 1283,151 0,1346 -chrVII 1048558 1050054 HC_gene_3779_tx_22 1 - 1048558 1050054 . 2 705,256 0,1241 -chrVII 1048558 1050054 HC_gene_3779_tx_23 1 - 1048558 1050054 . 2 697,640 0,857 -chrVII 1048558 1050054 HC_gene_3779_tx_24 1 - 1048558 1050054 . 2 1244,184 0,1313 -chrVII 1048558 1050054 HC_gene_3779_tx_25 1 - 1048558 1050054 . 2 916,25 0,1472 -chrVII 1048558 1050054 HC_gene_3779_tx_26 1 - 1048558 1050054 . 2 1078,187 0,1310 -chrVII 1048558 1050054 HC_gene_3779_tx_27 1 - 1048558 1050054 . 2 592,376 0,1121 -chrVII 1048558 1050054 HC_gene_3779_tx_28 1 - 1048558 1050054 . 2 912,284 0,1213 -chrVII 1048658 1050054 HC_gene_3779_tx_29 1 - 1048658 1050054 . 1 1397 0 -chrVII 1048659 1050054 HC_gene_3779_tx_30 2 - 1048659 1050054 . 1 1396 0 -chrVII 1048661 1049112 HC_gene_3779_tx_73 1 - 1048661 1049112 . 1 452 0 -chrVII 1048662 1050054 HC_gene_3779_tx_31 1 - 1048662 1050054 . 1 1393 0 -chrVII 1048663 1049309 HC_gene_3779_tx_74 1 - 1048663 1049309 . 1 647 0 -chrVII 1048663 1050054 HC_gene_3779_tx_32 1 - 1048663 1050054 . 1 1392 0 -chrVII 1048664 1049112 HC_gene_3779_tx_75 1 - 1048664 1049112 . 1 449 0 -chrVII 1048664 1049309 HC_gene_3779_tx_76 2 - 1048664 1049309 . 1 646 0 -chrVII 1048664 1049555 HC_gene_3779_tx_33 2 - 1048664 1049555 . 1 892 0 -chrVII 1048664 1049730 HC_gene_3779_tx_34 1 - 1048664 1049730 . 1 1067 0 -chrVII 1048664 1050054 HC_gene_3779_tx_35 2 - 1048664 1050054 . 1 1391 0 -chrVII 1048665 1050054 HC_gene_3779_tx_36 1 - 1048665 1050054 . 1 1390 0 -chrVII 1048666 1049205 HC_gene_3779_tx_77 1 - 1048666 1049205 . 1 540 0 -chrVII 1048666 1049309 HC_gene_3779_tx_78 2 - 1048666 1049309 . 1 644 0 -chrVII 1048666 1049555 HC_gene_3779_tx_37 2 - 1048666 1049555 . 1 890 0 -chrVII 1048666 1049730 HC_gene_3779_tx_38 1 - 1048666 1049730 . 1 1065 0 -chrVII 1048666 1050054 HC_gene_3779_tx_39 1 - 1048666 1050054 . 1 1389 0 -chrVII 1048669 1050054 HC_gene_3779_tx_40 1 - 1048669 1050054 . 1 1386 0 -chrVII 1048674 1050054 HC_gene_3779_tx_41 1 - 1048674 1050054 . 1 1381 0 -chrVII 1048675 1049205 HC_gene_3779_tx_79 1 - 1048675 1049205 . 1 531 0 -chrVII 1048675 1050054 HC_gene_3779_tx_42 2 - 1048675 1050054 . 1 1380 0 -chrVII 1048677 1049112 HC_gene_3779_tx_80 1 - 1048677 1049112 . 1 436 0 -chrVII 1048677 1049555 HC_gene_3779_tx_43 1 - 1048677 1049555 . 1 879 0 -chrVII 1048678 1049670 HC_gene_3779_tx_44 1 - 1048678 1049670 . 1 993 0 -chrVII 1048679 1050054 HC_gene_3779_tx_45 1 - 1048679 1050054 . 1 1376 0 -chrVII 1048680 1050054 HC_gene_3779_tx_46 1 - 1048680 1050054 . 1 1375 0 -chrVII 1048682 1050054 HC_gene_3779_tx_47 1 - 1048682 1050054 . 1 1373 0 -chrVII 1048684 1049730 HC_gene_3779_tx_48 1 - 1048684 1049730 . 1 1047 0 -chrVII 1048684 1050054 HC_gene_3779_tx_49 3 - 1048684 1050054 . 1 1371 0 -chrVII 1048685 1049112 HC_gene_3779_tx_81 1 - 1048685 1049112 . 1 428 0 -chrVII 1048685 1049205 HC_gene_3779_tx_82 1 - 1048685 1049205 . 1 521 0 -chrVII 1048685 1049309 HC_gene_3779_tx_83 1 - 1048685 1049309 . 1 625 0 -chrVII 1048685 1050054 HC_gene_3779_tx_50 1 - 1048685 1050054 . 1 1370 0 -chrVII 1048688 1049205 HC_gene_3779_tx_84 1 - 1048688 1049205 . 1 518 0 -chrVII 1048688 1050054 HC_gene_3779_tx_51 1 - 1048688 1050054 . 1 1367 0 -chrVII 1048690 1050054 HC_gene_3779_tx_52 1 - 1048690 1050054 . 1 1365 0 -chrVII 1048691 1049555 HC_gene_3779_tx_53 2 - 1048691 1049555 . 1 865 0 -chrVII 1048693 1050054 HC_gene_3779_tx_54 1 - 1048693 1050054 . 1 1362 0 -chrVII 1048701 1049205 HC_gene_3779_tx_85 1 - 1048701 1049205 . 1 505 0 -chrVII 1048702 1049555 HC_gene_3779_tx_55 1 - 1048702 1049555 . 1 854 0 -chrVII 1048703 1049555 HC_gene_3779_tx_56 1 - 1048703 1049555 . 1 853 0 -chrVII 1048704 1049205 HC_gene_3779_tx_86 1 - 1048704 1049205 . 1 502 0 -chrVII 1048704 1049309 HC_gene_3779_tx_87 1 - 1048704 1049309 . 1 606 0 -chrVII 1048704 1050054 HC_gene_3779_tx_57 1 - 1048704 1050054 . 1 1351 0 -chrVII 1048706 1049205 HC_gene_3779_tx_88 1 - 1048706 1049205 . 1 500 0 -chrVII 1048706 1049309 HC_gene_3779_tx_89 1 - 1048706 1049309 . 1 604 0 -chrVII 1048706 1049730 HC_gene_3779_tx_58 1 - 1048706 1049730 . 1 1025 0 -chrVII 1048706 1050054 HC_gene_3779_tx_59 7 - 1048706 1050054 . 1 1349 0 -chrVII 1048707 1049730 HC_gene_3779_tx_60 3 - 1048707 1049730 . 1 1024 0 -chrVII 1048707 1050054 HC_gene_3779_tx_61 4 - 1048707 1050054 . 1 1348 0 -chrVII 1048708 1049112 HC_gene_3779_tx_90 1 - 1048708 1049112 . 1 405 0 -chrVII 1048708 1049730 HC_gene_3779_tx_62 1 - 1048708 1049730 . 1 1023 0 -chrVII 1048708 1050054 HC_gene_3779_tx_63 1 - 1048708 1050054 . 1 1347 0 -chrVII 1048709 1049112 HC_gene_3779_tx_91 1 - 1048709 1049112 . 1 404 0 -chrVII 1048709 1049555 HC_gene_3779_tx_64 1 - 1048709 1049555 . 1 847 0 -chrVII 1048709 1050054 HC_gene_3779_tx_65 1 - 1048709 1050054 . 1 1346 0 -chrVII 1050095 1051340 HC_gene_3780_tx_1 1 - 1050095 1051340 . 1 1246 0 -chrVII 1050095 1051466 HC_gene_3780_tx_2 1 - 1050095 1051466 . 1 1372 0 -chrVII 1050238 1050792 LC_gene_3344_tx_1 1 + 1050238 1050792 . 1 555 0 -chrVII 1050688 1051087 HC_gene_3780_tx_3 17 - 1050688 1051087 . 1 400 0 -chrVII 1050688 1051340 HC_gene_3780_tx_4 62 - 1050688 1051340 . 1 653 0 -chrVII 1050688 1051340 HC_gene_3780_tx_5 1 - 1050688 1051340 . 2 507,52 0,601 -chrVII 1050688 1051466 HC_gene_3780_tx_6 29 - 1050688 1051466 . 1 779 0 -chrVII 1050688 1051592 HC_gene_3780_tx_7 26 - 1050688 1051592 . 1 905 0 -chrVII 1050688 1051592 HC_gene_3780_tx_8 1 - 1050688 1051592 . 2 80,768 0,137 -chrVII 1050688 1051728 HC_gene_3780_tx_9 155 - 1050688 1051728 . 1 1041 0 -chrVII 1050688 1051728 HC_gene_3780_tx_10 1 - 1050688 1051728 . 2 634,354 0,687 -chrVII 1050688 1051728 HC_gene_3780_tx_11 1 - 1050688 1051728 . 2 192,570 0,471 -chrVII 1050688 1051728 HC_gene_3780_tx_12 1 - 1050688 1051728 . 2 719,124 0,917 -chrVII 1050688 1051728 HC_gene_3780_tx_13 1 - 1050688 1051728 . 2 577,250 0,791 -chrVII 1050688 1051728 HC_gene_3780_tx_14 1 - 1050688 1051728 . 2 880,77 0,964 -chrVII 1050688 1051945 HC_gene_3780_tx_15 1 - 1050688 1051945 . 2 677,349 0,909 -chrVII 1050688 1051945 HC_gene_3780_tx_16 6 - 1050688 1051945 . 1 1258 0 -chrVII 1050688 1052205 HC_gene_3780_tx_17 7 - 1050688 1052205 . 1 1518 0 -chrVII 1050764 1051340 HC_gene_3780_tx_18 1 - 1050764 1051340 . 1 577 0 -chrVII 1050765 1051728 HC_gene_3780_tx_19 1 - 1050765 1051728 . 1 964 0 -chrVII 1050766 1051728 HC_gene_3780_tx_20 1 - 1050766 1051728 . 1 963 0 -chrVII 1052001 1052634 HC_gene_3345_tx_1 1 + 1052001 1052634 . 1 634 0 -chrVII 1052001 1052841 HC_gene_3345_tx_2 2 + 1052001 1052841 . 1 841 0 -chrVII 1052001 1057542 HC_gene_3345_tx_3 1 + 1052001 1057542 . 1 5542 0 -chrVII 1052597 1055953 HC_gene_3345_tx_22 1 + 1052597 1055953 . 1 3357 0 -chrVII 1052597 1057278 HC_gene_3345_tx_4 1 + 1052597 1057278 . 1 4682 0 -chrVII 1052597 1057282 HC_gene_3345_tx_5 1 + 1052597 1057282 . 1 4686 0 -chrVII 1052597 1057351 HC_gene_3345_tx_6 7 + 1052597 1057351 . 1 4755 0 -chrVII 1052597 1057351 HC_gene_3345_tx_7 1 + 1052597 1057351 . 2 2504,216 0,4539 -chrVII 1052597 1057442 HC_gene_3345_tx_8 29 + 1052597 1057442 . 1 4846 0 -chrVII 1052597 1057442 HC_gene_3345_tx_9 1 + 1052597 1057442 . 2 1866,2889 0,1957 -chrVII 1052597 1057442 HC_gene_3345_tx_10 1 + 1052597 1057442 . 2 2499,2271 0,2575 -chrVII 1052597 1057442 HC_gene_3345_tx_11 1 + 1052597 1057442 . 2 775,2572 0,2274 -chrVII 1052597 1057442 HC_gene_3345_tx_12 1 + 1052597 1057442 . 2 1268,3522 0,1324 -chrVII 1052597 1057442 HC_gene_3345_tx_13 1 + 1052597 1057442 . 2 3221,1228 0,3618 -chrVII 1052597 1057442 HC_gene_3345_tx_14 1 + 1052597 1057442 . 3 1900,485,1805 0,2468,3041 -chrVII 1052597 1057442 HC_gene_3345_tx_15 1 + 1052597 1057442 . 2 2717,2065 0,2781 -chrVII 1052597 1057542 HC_gene_3345_tx_16 6 + 1052597 1057542 . 1 4946 0 -chrVII 1052597 1057542 HC_gene_3345_tx_17 1 + 1052597 1057542 . 2 264,3617 0,1329 -chrVII 1052597 1057713 HC_gene_3345_tx_18 1 + 1052597 1057713 . 1 5117 0 -chrVII 1052937 1057351 HC_gene_3345_tx_19 1 + 1052937 1057351 . 1 4415 0 -chrVII 1052937 1057442 HC_gene_3345_tx_20 1 + 1052937 1057442 . 2 2480,1927 0,2579 -chrVII 1052937 1057442 HC_gene_3345_tx_21 4 + 1052937 1057442 . 1 4506 0 -chrVII 1054320 1057281 HC_gene_3345_tx_23 1 + 1054320 1057281 . 1 2962 0 -chrVII 1054320 1057351 HC_gene_3345_tx_24 1 + 1054320 1057351 . 1 3032 0 -chrVII 1054320 1057442 HC_gene_3345_tx_25 5 + 1054320 1057442 . 1 3123 0 -chrVII 1054320 1057442 HC_gene_3345_tx_26 1 + 1054320 1057442 . 2 1581,1449 0,1674 -chrVII 1054440 1055939 HC_gene_3345_tx_34 1 + 1054440 1055939 . 1 1500 0 -chrVII 1054440 1057442 HC_gene_3345_tx_27 4 + 1054440 1057442 . 1 3003 0 -chrVII 1054440 1057542 HC_gene_3345_tx_28 1 + 1054440 1057542 . 1 3103 0 -chrVII 1054534 1057351 HC_gene_3345_tx_29 1 + 1054534 1057351 . 1 2818 0 -chrVII 1054534 1057442 HC_gene_3345_tx_30 6 + 1054534 1057442 . 1 2909 0 -chrVII 1054534 1057442 HC_gene_3345_tx_31 1 + 1054534 1057442 . 2 1550,1247 0,1662 -chrVII 1054534 1057442 HC_gene_3345_tx_32 1 + 1054534 1057442 . 2 736,1593 0,1316 -chrVII 1054534 1057713 HC_gene_3345_tx_33 1 + 1054534 1057713 . 1 3180 0 -chrVII 1055501 1057351 HC_gene_3345_tx_35 6 + 1055501 1057351 . 1 1851 0 -chrVII 1055501 1057442 HC_gene_3345_tx_36 13 + 1055501 1057442 . 1 1942 0 -chrVII 1055501 1057442 HC_gene_3345_tx_37 1 + 1055501 1057442 . 2 1095,805 0,1137 -chrVII 1055501 1057542 HC_gene_3345_tx_38 1 + 1055501 1057542 . 1 2042 0 -chrVII 1057239 1058135 HC_gene_3781_tx_1 2 - 1057239 1058135 . 1 897 0 -chrVII 1057239 1058262 HC_gene_3781_tx_2 1 - 1057239 1058262 . 1 1024 0 -chrVII 1057239 1058757 HC_gene_3781_tx_54 6 - 1057239 1058757 . 1 1519 0 -chrVII 1057417 1057838 HC_gene_3781_tx_200 12 - 1057417 1057838 . 1 422 0 -chrVII 1057417 1057922 HC_gene_3781_tx_201 7 - 1057417 1057922 . 1 506 0 -chrVII 1057417 1058135 HC_gene_3781_tx_3 4 - 1057417 1058135 . 1 719 0 -chrVII 1057417 1058262 HC_gene_3781_tx_4 6 - 1057417 1058262 . 1 846 0 -chrVII 1057417 1058480 HC_gene_3781_tx_55 5 - 1057417 1058480 . 1 1064 0 -chrVII 1057417 1058561 HC_gene_3781_tx_56 1 - 1057417 1058561 . 1 1145 0 -chrVII 1057417 1058630 HC_gene_3781_tx_57 3 - 1057417 1058630 . 1 1214 0 -chrVII 1057417 1058757 HC_gene_3781_tx_58 60 - 1057417 1058757 . 1 1341 0 -chrVII 1057506 1058262 HC_gene_3781_tx_5 3 - 1057506 1058262 . 1 757 0 -chrVII 1057506 1058757 HC_gene_3781_tx_59 4 - 1057506 1058757 . 1 1252 0 -chrVII 1057512 1057838 HC_gene_3781_tx_224 1 - 1057512 1057838 . 1 327 0 -chrVII 1057512 1058757 HC_gene_3781_tx_60 7 - 1057512 1058757 . 1 1246 0 -chrVII 1057513 1057922 HC_gene_3781_tx_202 1 - 1057513 1057922 . 1 410 0 -chrVII 1057513 1058262 HC_gene_3781_tx_6 1 - 1057513 1058262 . 1 750 0 -chrVII 1057513 1058480 HC_gene_3781_tx_61 1 - 1057513 1058480 . 1 968 0 -chrVII 1057513 1058630 HC_gene_3781_tx_62 2 - 1057513 1058630 . 1 1118 0 -chrVII 1057513 1058757 HC_gene_3781_tx_63 5 - 1057513 1058757 . 1 1245 0 -chrVII 1057514 1057922 HC_gene_3781_tx_203 2 - 1057514 1057922 . 1 409 0 -chrVII 1057514 1058262 HC_gene_3781_tx_7 1 - 1057514 1058262 . 1 749 0 -chrVII 1057514 1058480 HC_gene_3781_tx_64 1 - 1057514 1058480 . 1 967 0 -chrVII 1057514 1058630 HC_gene_3781_tx_65 1 - 1057514 1058630 . 1 1117 0 -chrVII 1057514 1058757 HC_gene_3781_tx_66 15 - 1057514 1058757 . 1 1244 0 -chrVII 1057515 1058135 HC_gene_3781_tx_8 1 - 1057515 1058135 . 1 621 0 -chrVII 1057515 1058757 HC_gene_3781_tx_67 2 - 1057515 1058757 . 1 1243 0 -chrVII 1057516 1058480 HC_gene_3781_tx_68 2 - 1057516 1058480 . 1 965 0 -chrVII 1057516 1058757 HC_gene_3781_tx_69 4 - 1057516 1058757 . 1 1242 0 -chrVII 1057517 1057922 HC_gene_3781_tx_204 1 - 1057517 1057922 . 1 406 0 -chrVII 1057517 1058480 HC_gene_3781_tx_70 3 - 1057517 1058480 . 1 964 0 -chrVII 1057517 1058630 HC_gene_3781_tx_71 1 - 1057517 1058630 . 1 1114 0 -chrVII 1057517 1058757 HC_gene_3781_tx_72 24 - 1057517 1058757 . 1 1241 0 -chrVII 1057518 1057838 HC_gene_3781_tx_225 12 - 1057518 1057838 . 1 321 0 -chrVII 1057518 1057922 HC_gene_3781_tx_205 5 - 1057518 1057922 . 1 405 0 -chrVII 1057518 1058135 HC_gene_3781_tx_9 11 - 1057518 1058135 . 1 618 0 -chrVII 1057518 1058262 HC_gene_3781_tx_10 5 - 1057518 1058262 . 1 745 0 -chrVII 1057518 1058480 HC_gene_3781_tx_73 5 - 1057518 1058480 . 1 963 0 -chrVII 1057518 1058630 HC_gene_3781_tx_74 8 - 1057518 1058630 . 1 1113 0 -chrVII 1057518 1058757 HC_gene_3781_tx_75 63 - 1057518 1058757 . 1 1240 0 -chrVII 1057518 1058757 HC_gene_3781_tx_76 1 - 1057518 1058757 . 2 449,350 0,890 -chrVII 1057520 1058757 HC_gene_3781_tx_77 2 - 1057520 1058757 . 1 1238 0 -chrVII 1057521 1058757 HC_gene_3781_tx_78 2 - 1057521 1058757 . 1 1237 0 -chrVII 1057523 1058757 HC_gene_3781_tx_79 5 - 1057523 1058757 . 1 1235 0 -chrVII 1057524 1057838 HC_gene_3781_tx_226 1 - 1057524 1057838 . 1 315 0 -chrVII 1057524 1057922 HC_gene_3781_tx_206 2 - 1057524 1057922 . 1 399 0 -chrVII 1057524 1058135 HC_gene_3781_tx_11 2 - 1057524 1058135 . 1 612 0 -chrVII 1057524 1058262 HC_gene_3781_tx_12 1 - 1057524 1058262 . 1 739 0 -chrVII 1057524 1058480 HC_gene_3781_tx_80 4 - 1057524 1058480 . 1 957 0 -chrVII 1057524 1058561 HC_gene_3781_tx_81 1 - 1057524 1058561 . 1 1038 0 -chrVII 1057524 1058630 HC_gene_3781_tx_82 2 - 1057524 1058630 . 1 1107 0 -chrVII 1057524 1058757 HC_gene_3781_tx_83 20 - 1057524 1058757 . 1 1234 0 -chrVII 1057525 1057838 HC_gene_3781_tx_227 4 - 1057525 1057838 . 1 314 0 -chrVII 1057525 1057922 HC_gene_3781_tx_207 2 - 1057525 1057922 . 1 398 0 -chrVII 1057525 1058135 HC_gene_3781_tx_13 4 - 1057525 1058135 . 1 611 0 -chrVII 1057525 1058262 HC_gene_3781_tx_14 1 - 1057525 1058262 . 1 738 0 -chrVII 1057525 1058480 HC_gene_3781_tx_84 7 - 1057525 1058480 . 1 956 0 -chrVII 1057525 1058561 HC_gene_3781_tx_85 1 - 1057525 1058561 . 1 1037 0 -chrVII 1057525 1058630 HC_gene_3781_tx_86 1 - 1057525 1058630 . 1 1106 0 -chrVII 1057525 1058757 HC_gene_3781_tx_87 29 - 1057525 1058757 . 1 1233 0 -chrVII 1057526 1057922 HC_gene_3781_tx_208 1 - 1057526 1057922 . 1 397 0 -chrVII 1057526 1058561 HC_gene_3781_tx_88 1 - 1057526 1058561 . 1 1036 0 -chrVII 1057526 1058630 HC_gene_3781_tx_89 1 - 1057526 1058630 . 1 1105 0 -chrVII 1057526 1058757 HC_gene_3781_tx_90 2 - 1057526 1058757 . 1 1232 0 -chrVII 1057527 1058135 HC_gene_3781_tx_15 1 - 1057527 1058135 . 1 609 0 -chrVII 1057527 1058480 HC_gene_3781_tx_91 1 - 1057527 1058480 . 1 954 0 -chrVII 1057527 1058630 HC_gene_3781_tx_92 1 - 1057527 1058630 . 1 1104 0 -chrVII 1057527 1058757 HC_gene_3781_tx_93 1 - 1057527 1058757 . 2 612,382 0,849 -chrVII 1057527 1058757 HC_gene_3781_tx_94 10 - 1057527 1058757 . 1 1231 0 -chrVII 1057528 1057922 HC_gene_3781_tx_209 3 - 1057528 1057922 . 1 395 0 -chrVII 1057528 1058135 HC_gene_3781_tx_16 5 - 1057528 1058135 . 1 608 0 -chrVII 1057528 1058262 HC_gene_3781_tx_17 8 - 1057528 1058262 . 1 735 0 -chrVII 1057528 1058460 HC_gene_3781_tx_95 1 - 1057528 1058460 . 2 289,214 0,719 -chrVII 1057528 1058480 HC_gene_3781_tx_96 3 - 1057528 1058480 . 1 953 0 -chrVII 1057528 1058630 HC_gene_3781_tx_97 5 - 1057528 1058630 . 1 1103 0 -chrVII 1057528 1058757 HC_gene_3781_tx_98 27 - 1057528 1058757 . 1 1230 0 -chrVII 1057529 1058262 HC_gene_3781_tx_18 1 - 1057529 1058262 . 1 734 0 -chrVII 1057529 1058480 HC_gene_3781_tx_99 2 - 1057529 1058480 . 1 952 0 -chrVII 1057529 1058630 HC_gene_3781_tx_100 1 - 1057529 1058630 . 1 1102 0 -chrVII 1057529 1058757 HC_gene_3781_tx_101 4 - 1057529 1058757 . 1 1229 0 -chrVII 1057530 1057922 HC_gene_3781_tx_210 1 - 1057530 1057922 . 1 393 0 -chrVII 1057530 1058135 HC_gene_3781_tx_19 2 - 1057530 1058135 . 1 606 0 -chrVII 1057530 1058262 HC_gene_3781_tx_20 1 - 1057530 1058262 . 1 733 0 -chrVII 1057530 1058480 HC_gene_3781_tx_102 3 - 1057530 1058480 . 1 951 0 -chrVII 1057530 1058630 HC_gene_3781_tx_103 3 - 1057530 1058630 . 1 1101 0 -chrVII 1057530 1058757 HC_gene_3781_tx_104 22 - 1057530 1058757 . 1 1228 0 -chrVII 1057531 1057838 HC_gene_3781_tx_228 1 - 1057531 1057838 . 1 308 0 -chrVII 1057531 1057922 HC_gene_3781_tx_211 2 - 1057531 1057922 . 1 392 0 -chrVII 1057531 1058135 HC_gene_3781_tx_21 1 - 1057531 1058135 . 1 605 0 -chrVII 1057531 1058480 HC_gene_3781_tx_105 2 - 1057531 1058480 . 1 950 0 -chrVII 1057531 1058561 HC_gene_3781_tx_106 1 - 1057531 1058561 . 1 1031 0 -chrVII 1057531 1058630 HC_gene_3781_tx_107 1 - 1057531 1058630 . 1 1100 0 -chrVII 1057531 1058757 HC_gene_3781_tx_108 12 - 1057531 1058757 . 1 1227 0 -chrVII 1057532 1058262 HC_gene_3781_tx_22 1 - 1057532 1058262 . 1 731 0 -chrVII 1057532 1058480 HC_gene_3781_tx_109 2 - 1057532 1058480 . 1 949 0 -chrVII 1057532 1058757 HC_gene_3781_tx_110 9 - 1057532 1058757 . 1 1226 0 -chrVII 1057533 1057838 HC_gene_3781_tx_229 1 - 1057533 1057838 . 1 306 0 -chrVII 1057533 1057922 HC_gene_3781_tx_212 2 - 1057533 1057922 . 1 390 0 -chrVII 1057533 1058135 HC_gene_3781_tx_23 1 - 1057533 1058135 . 1 603 0 -chrVII 1057533 1058262 HC_gene_3781_tx_24 2 - 1057533 1058262 . 1 730 0 -chrVII 1057533 1058480 HC_gene_3781_tx_111 1 - 1057533 1058480 . 1 948 0 -chrVII 1057533 1058630 HC_gene_3781_tx_112 4 - 1057533 1058630 . 1 1098 0 -chrVII 1057533 1058757 HC_gene_3781_tx_113 16 - 1057533 1058757 . 1 1225 0 -chrVII 1057534 1057838 HC_gene_3781_tx_230 1 - 1057534 1057838 . 1 305 0 -chrVII 1057534 1057922 HC_gene_3781_tx_213 4 - 1057534 1057922 . 1 389 0 -chrVII 1057534 1058135 HC_gene_3781_tx_25 3 - 1057534 1058135 . 1 602 0 -chrVII 1057534 1058480 HC_gene_3781_tx_114 3 - 1057534 1058480 . 1 947 0 -chrVII 1057534 1058630 HC_gene_3781_tx_115 1 - 1057534 1058630 . 1 1097 0 -chrVII 1057534 1058757 HC_gene_3781_tx_116 18 - 1057534 1058757 . 1 1224 0 -chrVII 1057535 1058135 HC_gene_3781_tx_26 1 - 1057535 1058135 . 1 601 0 -chrVII 1057536 1058135 HC_gene_3781_tx_27 1 - 1057536 1058135 . 1 600 0 -chrVII 1057537 1058757 HC_gene_3781_tx_117 2 - 1057537 1058757 . 1 1221 0 -chrVII 1057538 1057838 HC_gene_3781_tx_231 1 - 1057538 1057838 . 1 301 0 -chrVII 1057538 1057922 HC_gene_3781_tx_214 1 - 1057538 1057922 . 1 385 0 -chrVII 1057538 1058757 HC_gene_3781_tx_118 5 - 1057538 1058757 . 1 1220 0 -chrVII 1057540 1058757 HC_gene_3781_tx_119 2 - 1057540 1058757 . 1 1218 0 -chrVII 1057542 1057838 HC_gene_3781_tx_232 2 - 1057542 1057838 . 1 297 0 -chrVII 1057542 1058480 HC_gene_3781_tx_120 1 - 1057542 1058480 . 1 939 0 -chrVII 1057542 1058757 HC_gene_3781_tx_121 1 - 1057542 1058757 . 1 1216 0 -chrVII 1057543 1058757 HC_gene_3781_tx_122 1 - 1057543 1058757 . 1 1215 0 -chrVII 1057544 1057838 HC_gene_3781_tx_233 1 - 1057544 1057838 . 1 295 0 -chrVII 1057544 1057922 HC_gene_3781_tx_215 1 - 1057544 1057922 . 1 379 0 -chrVII 1057544 1058135 HC_gene_3781_tx_28 2 - 1057544 1058135 . 1 592 0 -chrVII 1057544 1058561 HC_gene_3781_tx_123 1 - 1057544 1058561 . 1 1018 0 -chrVII 1057544 1058630 HC_gene_3781_tx_124 1 - 1057544 1058630 . 1 1087 0 -chrVII 1057544 1058757 HC_gene_3781_tx_125 19 - 1057544 1058757 . 1 1214 0 -chrVII 1057545 1057838 HC_gene_3781_tx_234 1 - 1057545 1057838 . 1 294 0 -chrVII 1057545 1057922 HC_gene_3781_tx_216 1 - 1057545 1057922 . 1 378 0 -chrVII 1057545 1058262 HC_gene_3781_tx_29 1 - 1057545 1058262 . 1 718 0 -chrVII 1057545 1058480 HC_gene_3781_tx_126 1 - 1057545 1058480 . 1 936 0 -chrVII 1057545 1058630 HC_gene_3781_tx_127 2 - 1057545 1058630 . 1 1086 0 -chrVII 1057545 1058757 HC_gene_3781_tx_128 10 - 1057545 1058757 . 1 1213 0 -chrVII 1057546 1058757 HC_gene_3781_tx_129 2 - 1057546 1058757 . 1 1212 0 -chrVII 1057547 1058630 HC_gene_3781_tx_130 1 - 1057547 1058630 . 1 1084 0 -chrVII 1057547 1058757 HC_gene_3781_tx_131 1 - 1057547 1058757 . 1 1211 0 -chrVII 1057548 1057922 HC_gene_3781_tx_217 1 - 1057548 1057922 . 1 375 0 -chrVII 1057548 1058757 HC_gene_3781_tx_132 1 - 1057548 1058757 . 1 1210 0 -chrVII 1057549 1058757 HC_gene_3781_tx_133 7 - 1057549 1058757 . 1 1209 0 -chrVII 1057551 1058262 HC_gene_3781_tx_30 1 - 1057551 1058262 . 1 712 0 -chrVII 1057551 1058480 HC_gene_3781_tx_134 1 - 1057551 1058480 . 1 930 0 -chrVII 1057551 1058757 HC_gene_3781_tx_135 4 - 1057551 1058757 . 1 1207 0 -chrVII 1057552 1058630 HC_gene_3781_tx_136 1 - 1057552 1058630 . 1 1079 0 -chrVII 1057552 1058757 HC_gene_3781_tx_137 2 - 1057552 1058757 . 1 1206 0 -chrVII 1057553 1058757 HC_gene_3781_tx_138 2 - 1057553 1058757 . 1 1205 0 -chrVII 1057554 1057838 HC_gene_3781_tx_235 1 - 1057554 1057838 . 1 285 0 -chrVII 1057554 1058262 HC_gene_3781_tx_31 1 - 1057554 1058262 . 1 709 0 -chrVII 1057554 1058561 HC_gene_3781_tx_139 1 - 1057554 1058561 . 1 1008 0 -chrVII 1057554 1058757 HC_gene_3781_tx_140 10 - 1057554 1058757 . 1 1204 0 -chrVII 1057555 1058480 HC_gene_3781_tx_141 1 - 1057555 1058480 . 1 926 0 -chrVII 1057555 1058630 HC_gene_3781_tx_142 1 - 1057555 1058630 . 1 1076 0 -chrVII 1057555 1058757 HC_gene_3781_tx_143 4 - 1057555 1058757 . 1 1203 0 -chrVII 1057556 1058757 HC_gene_3781_tx_144 2 - 1057556 1058757 . 1 1202 0 -chrVII 1057557 1057838 HC_gene_3781_tx_236 1 - 1057557 1057838 . 1 282 0 -chrVII 1057557 1057922 HC_gene_3781_tx_218 1 - 1057557 1057922 . 1 366 0 -chrVII 1057557 1058757 HC_gene_3781_tx_145 4 - 1057557 1058757 . 1 1201 0 -chrVII 1057558 1058135 HC_gene_3781_tx_32 1 - 1057558 1058135 . 1 578 0 -chrVII 1057558 1058757 HC_gene_3781_tx_146 7 - 1057558 1058757 . 1 1200 0 -chrVII 1057559 1058757 HC_gene_3781_tx_147 3 - 1057559 1058757 . 1 1199 0 -chrVII 1057561 1058630 HC_gene_3781_tx_148 2 - 1057561 1058630 . 1 1070 0 -chrVII 1057561 1058757 HC_gene_3781_tx_149 1 - 1057561 1058757 . 1 1197 0 -chrVII 1057562 1058757 HC_gene_3781_tx_150 1 - 1057562 1058757 . 1 1196 0 -chrVII 1057564 1058757 HC_gene_3781_tx_151 3 - 1057564 1058757 . 1 1194 0 -chrVII 1057565 1058757 HC_gene_3781_tx_152 2 - 1057565 1058757 . 1 1193 0 -chrVII 1057566 1058480 HC_gene_3781_tx_153 1 - 1057566 1058480 . 1 915 0 -chrVII 1057566 1058757 HC_gene_3781_tx_154 2 - 1057566 1058757 . 1 1192 0 -chrVII 1057567 1058757 HC_gene_3781_tx_155 3 - 1057567 1058757 . 1 1191 0 -chrVII 1057569 1058757 HC_gene_3781_tx_156 1 - 1057569 1058757 . 1 1189 0 -chrVII 1057570 1058630 HC_gene_3781_tx_157 1 - 1057570 1058630 . 1 1061 0 -chrVII 1057571 1057922 HC_gene_3781_tx_219 1 - 1057571 1057922 . 1 352 0 -chrVII 1057571 1058135 HC_gene_3781_tx_33 1 - 1057571 1058135 . 1 565 0 -chrVII 1057571 1058262 HC_gene_3781_tx_34 1 - 1057571 1058262 . 1 692 0 -chrVII 1057571 1058757 HC_gene_3781_tx_158 3 - 1057571 1058757 . 1 1187 0 -chrVII 1057572 1058757 HC_gene_3781_tx_159 3 - 1057572 1058757 . 1 1186 0 -chrVII 1057573 1057838 HC_gene_3781_tx_237 1 - 1057573 1057838 . 1 266 0 -chrVII 1057573 1057922 HC_gene_3781_tx_220 1 - 1057573 1057922 . 1 350 0 -chrVII 1057573 1058135 HC_gene_3781_tx_35 1 - 1057573 1058135 . 1 563 0 -chrVII 1057573 1058262 HC_gene_3781_tx_36 1 - 1057573 1058262 . 1 690 0 -chrVII 1057573 1058480 HC_gene_3781_tx_160 3 - 1057573 1058480 . 1 908 0 -chrVII 1057573 1058630 HC_gene_3781_tx_161 1 - 1057573 1058630 . 1 1058 0 -chrVII 1057573 1058757 HC_gene_3781_tx_162 13 - 1057573 1058757 . 1 1185 0 -chrVII 1057574 1057838 HC_gene_3781_tx_238 1 - 1057574 1057838 . 1 265 0 -chrVII 1057574 1058262 HC_gene_3781_tx_37 1 - 1057574 1058262 . 1 689 0 -chrVII 1057574 1058630 HC_gene_3781_tx_163 1 - 1057574 1058630 . 1 1057 0 -chrVII 1057574 1058757 HC_gene_3781_tx_164 7 - 1057574 1058757 . 1 1184 0 -chrVII 1057575 1058630 HC_gene_3781_tx_165 1 - 1057575 1058630 . 1 1056 0 -chrVII 1057575 1058757 HC_gene_3781_tx_166 2 - 1057575 1058757 . 1 1183 0 -chrVII 1057576 1058757 HC_gene_3781_tx_167 2 - 1057576 1058757 . 1 1182 0 -chrVII 1057577 1058135 HC_gene_3781_tx_38 1 - 1057577 1058135 . 1 559 0 -chrVII 1057579 1058630 HC_gene_3781_tx_168 2 - 1057579 1058630 . 1 1052 0 -chrVII 1057579 1058757 HC_gene_3781_tx_169 7 - 1057579 1058757 . 1 1179 0 -chrVII 1057580 1058262 HC_gene_3781_tx_39 1 - 1057580 1058262 . 1 683 0 -chrVII 1057580 1058757 HC_gene_3781_tx_170 3 - 1057580 1058757 . 1 1178 0 -chrVII 1057581 1057838 HC_gene_3781_tx_239 1 - 1057581 1057838 . 1 258 0 -chrVII 1057581 1058135 HC_gene_3781_tx_40 3 - 1057581 1058135 . 1 555 0 -chrVII 1057581 1058480 HC_gene_3781_tx_171 5 - 1057581 1058480 . 1 900 0 -chrVII 1057581 1058630 HC_gene_3781_tx_172 2 - 1057581 1058630 . 1 1050 0 -chrVII 1057581 1058757 HC_gene_3781_tx_173 19 - 1057581 1058757 . 1 1177 0 -chrVII 1057582 1058757 HC_gene_3781_tx_174 2 - 1057582 1058757 . 1 1176 0 -chrVII 1057583 1057838 HC_gene_3781_tx_240 1 - 1057583 1057838 . 1 256 0 -chrVII 1057583 1058135 HC_gene_3781_tx_41 1 - 1057583 1058135 . 1 553 0 -chrVII 1057583 1058262 HC_gene_3781_tx_42 2 - 1057583 1058262 . 1 680 0 -chrVII 1057583 1058480 HC_gene_3781_tx_175 4 - 1057583 1058480 . 1 898 0 -chrVII 1057583 1058630 HC_gene_3781_tx_176 1 - 1057583 1058630 . 1 1048 0 -chrVII 1057583 1058757 HC_gene_3781_tx_177 31 - 1057583 1058757 . 1 1175 0 -chrVII 1057583 1058757 HC_gene_3781_tx_178 1 - 1057583 1058757 . 2 35,1043 0,132 -chrVII 1057584 1058262 HC_gene_3781_tx_43 2 - 1057584 1058262 . 1 679 0 -chrVII 1057584 1058630 HC_gene_3781_tx_179 2 - 1057584 1058630 . 1 1047 0 -chrVII 1057584 1058757 HC_gene_3781_tx_180 11 - 1057584 1058757 . 1 1174 0 -chrVII 1057585 1057922 HC_gene_3781_tx_221 4 - 1057585 1057922 . 1 338 0 -chrVII 1057585 1058135 HC_gene_3781_tx_44 11 - 1057585 1058135 . 1 551 0 -chrVII 1057585 1058262 HC_gene_3781_tx_45 3 - 1057585 1058262 . 1 678 0 -chrVII 1057585 1058480 HC_gene_3781_tx_181 6 - 1057585 1058480 . 1 896 0 -chrVII 1057585 1058561 HC_gene_3781_tx_182 2 - 1057585 1058561 . 1 977 0 -chrVII 1057585 1058630 HC_gene_3781_tx_183 8 - 1057585 1058630 . 1 1046 0 -chrVII 1057585 1058757 HC_gene_3781_tx_184 31 - 1057585 1058757 . 1 1173 0 -chrVII 1057586 1057922 HC_gene_3781_tx_222 1 - 1057586 1057922 . 1 337 0 -chrVII 1057586 1058135 HC_gene_3781_tx_46 4 - 1057586 1058135 . 1 550 0 -chrVII 1057586 1058262 HC_gene_3781_tx_47 1 - 1057586 1058262 . 1 677 0 -chrVII 1057586 1058480 HC_gene_3781_tx_185 2 - 1057586 1058480 . 1 895 0 -chrVII 1057586 1058561 HC_gene_3781_tx_186 1 - 1057586 1058561 . 1 976 0 -chrVII 1057586 1058630 HC_gene_3781_tx_187 3 - 1057586 1058630 . 1 1045 0 -chrVII 1057586 1058757 HC_gene_3781_tx_188 12 - 1057586 1058757 . 1 1172 0 -chrVII 1057587 1057838 HC_gene_3781_tx_241 1 - 1057587 1057838 . 1 252 0 -chrVII 1057587 1057922 HC_gene_3781_tx_223 1 - 1057587 1057922 . 1 336 0 -chrVII 1057587 1058135 HC_gene_3781_tx_48 4 - 1057587 1058135 . 1 549 0 -chrVII 1057587 1058262 HC_gene_3781_tx_49 1 - 1057587 1058262 . 1 676 0 -chrVII 1057587 1058480 HC_gene_3781_tx_189 3 - 1057587 1058480 . 1 894 0 -chrVII 1057587 1058630 HC_gene_3781_tx_190 4 - 1057587 1058630 . 1 1044 0 -chrVII 1057587 1058757 HC_gene_3781_tx_191 42 - 1057587 1058757 . 1 1171 0 -chrVII 1057587 1058757 HC_gene_3781_tx_192 1 - 1057587 1058757 . 2 757,116 0,1055 -chrVII 1057588 1058262 HC_gene_3781_tx_50 1 - 1057588 1058262 . 1 675 0 -chrVII 1057588 1058480 HC_gene_3781_tx_193 2 - 1057588 1058480 . 1 893 0 -chrVII 1057588 1058757 HC_gene_3781_tx_194 2 - 1057588 1058757 . 1 1170 0 -chrVII 1057589 1058757 HC_gene_3781_tx_195 1 - 1057589 1058757 . 1 1169 0 -chrVII 1057590 1058135 HC_gene_3781_tx_51 1 - 1057590 1058135 . 1 546 0 -chrVII 1057590 1058262 HC_gene_3781_tx_52 1 - 1057590 1058262 . 1 673 0 -chrVII 1057590 1058630 HC_gene_3781_tx_196 1 - 1057590 1058630 . 1 1041 0 -chrVII 1057590 1058757 HC_gene_3781_tx_197 13 - 1057590 1058757 . 1 1168 0 -chrVII 1057679 1058757 HC_gene_3781_tx_198 1 - 1057679 1058757 . 1 1079 0 -chrVII 1057680 1058262 HC_gene_3781_tx_53 2 - 1057680 1058262 . 1 583 0 -chrVII 1057680 1058757 HC_gene_3781_tx_199 2 - 1057680 1058757 . 1 1078 0 -chrVII 1058911 1060087 HC_gene_3782_tx_1 48 - 1058911 1060087 . 1 1177 0 -chrVII 1059041 1059543 HC_gene_3346_tx_1 14 + 1059041 1059543 . 1 503 0 -chrVII 1060295 1060868 HC_gene_3347_tx_1 4 + 1060295 1060868 . 1 574 0 -chrVII 1060295 1061711 HC_gene_3347_tx_2 1 + 1060295 1061711 . 2 842,528 0,889 -chrVII 1060295 1061711 HC_gene_3347_tx_3 2 + 1060295 1061711 . 1 1417 0 -chrVII 1060344 1060987 HC_gene_3783_tx_1 1 - 1060344 1060987 . 1 644 0 -chrVII 1060344 1061424 HC_gene_3783_tx_3 1 - 1060344 1061424 . 2 501,527 0,554 -chrVII 1060344 1061424 HC_gene_3783_tx_4 1 - 1060344 1061424 . 1 1081 0 -chrVII 1060344 1061631 HC_gene_3783_tx_5 5 - 1060344 1061631 . 1 1288 0 -chrVII 1060472 1060987 HC_gene_3783_tx_2 23 - 1060472 1060987 . 1 516 0 -chrVII 1060472 1061424 HC_gene_3783_tx_6 17 - 1060472 1061424 . 1 953 0 -chrVII 1060472 1061600 HC_gene_3783_tx_7 1 - 1060472 1061600 . 2 616,182 0,947 -chrVII 1060472 1061631 HC_gene_3783_tx_8 101 - 1060472 1061631 . 1 1160 0 -chrVII 1060472 1061631 HC_gene_3783_tx_9 1 - 1060472 1061631 . 2 704,57 0,1103 -chrVII 1060579 1061631 HC_gene_3783_tx_10 8 - 1060579 1061631 . 1 1053 0 -chrVII 1061759 1062316 HC_gene_3784_tx_1 364 - 1061759 1062316 . 1 558 0 -chrVII 1061759 1062566 HC_gene_3784_tx_2 8 - 1061759 1062566 . 1 808 0 -chrVII 1061759 1062619 HC_gene_3784_tx_3 24 - 1061759 1062619 . 1 861 0 -chrVII 1061759 1062745 HC_gene_3784_tx_4 112 - 1061759 1062745 . 1 987 0 -chrVII 1061759 1062847 HC_gene_3784_tx_5 57 - 1061759 1062847 . 1 1089 0 -chrVII 1061759 1062934 HC_gene_3784_tx_6 14 - 1061759 1062934 . 1 1176 0 -chrVII 1061759 1063167 HC_gene_3784_tx_7 407 - 1061759 1063167 . 1 1409 0 -chrVII 1061907 1062211 LC_gene_3348_tx_1 1 + 1061907 1062211 . 1 305 0 -chrVII 1063652 1064997 HC_gene_3785_tx_1 25 - 1063652 1064997 . 1 1346 0 -chrVII 1063652 1064997 HC_gene_3785_tx_2 1 - 1063652 1064997 . 2 472,769 0,577 -chrVII 1063652 1065054 HC_gene_3785_tx_3 11 - 1063652 1065054 . 1 1403 0 -chrVII 1063715 1064197 LC_gene_3349_tx_1 1 + 1063715 1064197 . 1 483 0 -chrVII 1065107 1065498 MC_gene_3350_tx_1 1 + 1065107 1065498 . 1 392 0 -chrVII 1065474 1065585 MC_gene_3351_tx_1 1 + 1065474 1065585 . 1 112 0 -chrVII 1066356 1066736 MC_gene_3352_tx_1 1 + 1066356 1066736 . 1 381 0 -chrVII 1067002 1069051 HC_gene_3786_tx_1 1 - 1067002 1069051 . 1 2050 0 -chrVII 1067002 1069127 HC_gene_3786_tx_2 1 - 1067002 1069127 . 1 2126 0 -chrVII 1070222 1072192 HC_gene_3353_tx_1 1 + 1070222 1072192 . 1 1971 0 -chrVII 1071401 1072673 LC_gene_3787_tx_1 1 - 1071401 1072673 . 1 1273 0 -chrVII 1072932 1073732 LC_gene_3788_tx_1 1 - 1072932 1073732 . 1 801 0 -chrVII 1073242 1073898 MC_gene_3354_tx_1 1 + 1073242 1073898 . 1 657 0 -chrVII 1073774 1075838 HC_gene_3789_tx_1 1 - 1073774 1075838 . 1 2065 0 -chrVII 1073774 1076145 HC_gene_3789_tx_2 5 - 1073774 1076145 . 1 2372 0 -chrVII 1074281 1075835 LC_gene_3355_tx_1 1 + 1074281 1075835 . 1 1555 0 -chrVII 1076570 1078483 HC_gene_3356_tx_1 1 + 1076570 1078483 . 1 1914 0 -chrVII 1077012 1078413 MC_gene_3790_tx_1 1 - 1077012 1078413 . 1 1402 0 -chrVII 1078610 1079256 HC_gene_3357_tx_1 5 + 1078610 1079256 . 1 647 0 -chrVII 1078610 1079566 HC_gene_3357_tx_2 8 + 1078610 1079566 . 1 957 0 -chrVII 1078610 1079829 HC_gene_3357_tx_3 1 + 1078610 1079829 . 1 1220 0 -chrVII 1078694 1079532 LC_gene_3791_tx_1 1 - 1078694 1079532 . 1 839 0 -chrVII 1079554 1080601 MC_gene_3792_tx_1 1 - 1079554 1080601 . 1 1048 0 -chrVII 1080712 1082737 HC_gene_3793_tx_1 1 - 1080712 1082737 . 1 2026 0 -chrVII 1081214 1083618 MC_gene_3358_tx_1 1 + 1081214 1083618 . 1 2405 0 -chrVII 1082922 1083758 MC_gene_3359_tx_1 1 + 1082922 1083758 . 1 837 0 -chrVII 1084057 1085499 LC_gene_3794_tx_1 1 - 1084057 1085499 . 2 1315,38 0,1405 -chrVIII 354 3229 MC_gene_4027_tx_1 1 - 354 3229 . 1 2876 0 -chrVIII 4007 5054 LC_gene_3795_tx_1 1 + 4007 5054 . 1 1048 0 -chrVIII 6393 7651 HC_gene_3796_tx_1 63 + 6393 7651 . 1 1259 0 -chrVIII 6956 7651 HC_gene_3796_tx_2 19 + 6956 7651 . 1 696 0 -chrVIII 7113 7651 HC_gene_3796_tx_3 7 + 7113 7651 . 1 539 0 -chrVIII 8189 8590 HC_gene_4028_tx_1 8 - 8189 8590 . 1 402 0 -chrVIII 8189 10238 HC_gene_4028_tx_2 6 - 8189 10238 . 1 2050 0 -chrVIII 8189 10657 HC_gene_4028_tx_3 1 - 8189 10657 . 1 2469 0 -chrVIII 8189 10798 HC_gene_4028_tx_4 1 - 8189 10798 . 1 2610 0 -chrVIII 8189 11026 HC_gene_4028_tx_5 3 - 8189 11026 . 1 2838 0 -chrVIII 10754 11564 HC_gene_3797_tx_1 1 + 10754 11564 . 1 811 0 -chrVIII 11136 11564 HC_gene_3797_tx_2 44 + 11136 11564 . 1 429 0 -chrVIII 11214 11564 HC_gene_3797_tx_3 22 + 11214 11564 . 1 351 0 -chrVIII 11310 11741 LC_gene_4029_tx_1 1 - 11310 11741 . 1 432 0 -chrVIII 11612 11847 LC_gene_3798_tx_1 1 + 11612 11847 . 1 236 0 -chrVIII 11798 12550 LC_gene_4030_tx_1 1 - 11798 12550 . 1 753 0 -chrVIII 11967 12978 MC_gene_3799_tx_1 1 + 11967 12978 . 1 1012 0 -chrVIII 12107 12879 MC_gene_3799_tx_2 1 + 12107 12879 . 1 773 0 -chrVIII 12781 13267 LC_gene_4031_tx_1 1 - 12781 13267 . 1 487 0 -chrVIII 13547 14350 HC_gene_3800_tx_1 9 + 13547 14350 . 1 804 0 -chrVIII 13547 14454 HC_gene_3800_tx_2 4 + 13547 14454 . 1 908 0 -chrVIII 13547 14571 HC_gene_3800_tx_3 23 + 13547 14571 . 1 1025 0 -chrVIII 14566 15626 HC_gene_4032_tx_1 6 - 14566 15626 . 1 1061 0 -chrVIII 14566 15887 HC_gene_4032_tx_2 5 - 14566 15887 . 1 1322 0 -chrVIII 14566 15887 HC_gene_4032_tx_3 1 - 14566 15887 . 2 384,850 0,472 -chrVIII 14769 15887 HC_gene_4032_tx_4 1 - 14769 15887 . 1 1119 0 -chrVIII 15830 16218 HC_gene_3801_tx_1 4 + 15830 16218 . 1 389 0 -chrVIII 15830 17120 HC_gene_3801_tx_2 1 + 15830 17120 . 1 1291 0 -chrVIII 16086 17120 HC_gene_3801_tx_3 1 + 16086 17120 . 1 1035 0 -chrVIII 16158 17120 HC_gene_3801_tx_4 1 + 16158 17120 . 1 963 0 -chrVIII 18563 19188 LC_gene_3802_tx_1 1 + 18563 19188 . 1 626 0 -chrVIII 18836 21010 HC_gene_4033_tx_1 15 - 18836 21010 . 1 2175 0 -chrVIII 18836 21108 HC_gene_4033_tx_2 11 - 18836 21108 . 1 2273 0 -chrVIII 21730 22812 HC_gene_3803_tx_1 2 + 21730 22812 . 1 1083 0 -chrVIII 21730 23610 HC_gene_3803_tx_2 21 + 21730 23610 . 1 1881 0 -chrVIII 21730 23610 HC_gene_3803_tx_3 1 + 21730 23610 . 2 808,975 0,906 -chrVIII 23487 25545 HC_gene_4034_tx_1 10 - 23487 25545 . 1 2059 0 -chrVIII 23487 25545 HC_gene_4034_tx_2 1 - 23487 25545 . 2 995,1001 0,1058 -chrVIII 23487 25545 HC_gene_4034_tx_3 1 - 23487 25545 . 2 832,1158 0,901 -chrVIII 26210 27985 MC_gene_3804_tx_1 1 + 26210 27985 . 1 1776 0 -chrVIII 26399 27942 MC_gene_3804_tx_2 1 + 26399 27942 . 2 721,728 0,816 -chrVIII 27778 30343 HC_gene_4035_tx_1 2 - 27778 30343 . 1 2566 0 -chrVIII 27859 30343 HC_gene_4035_tx_2 3 - 27859 30343 . 1 2485 0 -chrVIII 31540 32775 HC_gene_4036_tx_1 4 - 31540 32775 . 1 1236 0 -chrVIII 32627 33109 LC_gene_3805_tx_1 1 + 32627 33109 . 1 483 0 -chrVIII 33038 33281 HC_gene_4037_tx_1 49 - 33038 33281 . 1 244 0 -chrVIII 33038 33362 HC_gene_4037_tx_2 88 - 33038 33362 . 1 325 0 -chrVIII 33038 33476 HC_gene_4037_tx_3 68 - 33038 33476 . 1 439 0 -chrVIII 33038 33558 HC_gene_4037_tx_4 216 - 33038 33558 . 1 521 0 -chrVIII 33038 33778 HC_gene_4037_tx_5 29 - 33038 33778 . 1 741 0 -chrVIII 33038 33854 HC_gene_4037_tx_6 1 - 33038 33854 . 2 679,92 0,725 -chrVIII 33038 33875 HC_gene_4037_tx_7 1 - 33038 33875 . 2 589,113 0,725 -chrVIII 33038 33891 HC_gene_4037_tx_8 98 - 33038 33891 . 1 854 0 -chrVIII 33038 33891 HC_gene_4037_tx_9 1 - 33038 33891 . 2 332,265 0,589 -chrVIII 33038 33891 HC_gene_4037_tx_10 1 - 33038 33891 . 2 606,193 0,661 -chrVIII 33038 33891 HC_gene_4037_tx_11 1 - 33038 33891 . 2 582,211 0,643 -chrVIII 33038 33891 HC_gene_4037_tx_12 1 - 33038 33891 . 2 581,219 0,635 -chrVIII 33038 33902 HC_gene_4037_tx_13 1 - 33038 33902 . 2 582,143 0,722 -chrVIII 33038 34003 HC_gene_4037_tx_14 49 - 33038 34003 . 1 966 0 -chrVIII 33038 34003 HC_gene_4037_tx_15 1 - 33038 34003 . 2 648,180 0,786 -chrVIII 33038 34161 HC_gene_4037_tx_16 1 - 33038 34161 . 2 447,621 0,503 -chrVIII 33038 34182 HC_gene_4037_tx_17 1 - 33038 34182 . 2 618,423 0,722 -chrVIII 33038 34189 HC_gene_4037_tx_18 510 - 33038 34189 . 1 1152 0 -chrVIII 33038 34189 HC_gene_4037_tx_19 1 - 33038 34189 . 2 580,518 0,634 -chrVIII 33038 34189 HC_gene_4037_tx_20 1 - 33038 34189 . 2 237,866 0,286 -chrVIII 33038 34189 HC_gene_4037_tx_21 1 - 33038 34189 . 2 546,527 0,625 -chrVIII 33038 34189 HC_gene_4037_tx_22 1 - 33038 34189 . 2 515,527 0,625 -chrVIII 33038 34189 HC_gene_4037_tx_23 1 - 33038 34189 . 2 927,134 0,1018 -chrVIII 33038 34189 HC_gene_4037_tx_24 1 - 33038 34189 . 2 387,608 0,544 -chrVIII 33038 34189 HC_gene_4037_tx_25 1 - 33038 34189 . 2 546,539 0,613 -chrVIII 33038 34189 HC_gene_4037_tx_26 1 - 33038 34189 . 2 46,1038 0,114 -chrVIII 33038 34189 HC_gene_4037_tx_27 1 - 33038 34189 . 2 431,669 0,483 -chrVIII 33038 34189 HC_gene_4037_tx_28 1 - 33038 34189 . 2 576,509 0,643 -chrVIII 33038 34189 HC_gene_4037_tx_29 1 - 33038 34189 . 2 576,491 0,661 -chrVIII 33038 34189 HC_gene_4037_tx_30 1 - 33038 34189 . 2 265,608 0,544 -chrVIII 33162 34167 LC_gene_3806_tx_1 1 + 33162 34167 . 1 1006 0 -chrVIII 34513 35482 HC_gene_4038_tx_1 3 - 34513 35482 . 1 970 0 -chrVIII 34513 35707 HC_gene_4038_tx_2 1 - 34513 35707 . 1 1195 0 -chrVIII 34513 36045 HC_gene_4038_tx_3 1 - 34513 36045 . 2 557,786 0,747 -chrVIII 34513 36045 HC_gene_4038_tx_4 6 - 34513 36045 . 1 1533 0 -chrVIII 34513 36045 HC_gene_4038_tx_5 1 - 34513 36045 . 2 671,786 0,747 -chrVIII 34513 36045 HC_gene_4038_tx_6 1 - 34513 36045 . 2 557,865 0,668 -chrVIII 34688 35482 HC_gene_4038_tx_7 1 - 34688 35482 . 1 795 0 -chrVIII 34698 35816 HC_gene_4038_tx_8 1 - 34698 35816 . 1 1119 0 -chrVIII 34709 36045 HC_gene_4038_tx_9 2 - 34709 36045 . 1 1337 0 -chrVIII 34710 35584 HC_gene_4038_tx_10 1 - 34710 35584 . 1 875 0 -chrVIII 34711 36045 HC_gene_4038_tx_11 1 - 34711 36045 . 1 1335 0 -chrVIII 34712 36045 HC_gene_4038_tx_12 1 - 34712 36045 . 1 1334 0 -chrVIII 34716 36045 HC_gene_4038_tx_13 1 - 34716 36045 . 2 499,768 0,562 -chrVIII 34719 35584 HC_gene_4038_tx_14 1 - 34719 35584 . 1 866 0 -chrVIII 34719 35816 HC_gene_4038_tx_15 1 - 34719 35816 . 1 1098 0 -chrVIII 34719 36045 HC_gene_4038_tx_16 4 - 34719 36045 . 1 1327 0 -chrVIII 34719 36045 HC_gene_4038_tx_17 1 - 34719 36045 . 2 499,768 0,559 -chrVIII 34720 35482 HC_gene_4038_tx_18 1 - 34720 35482 . 1 763 0 -chrVIII 34720 36045 HC_gene_4038_tx_19 3 - 34720 36045 . 1 1326 0 -chrVIII 34721 36045 HC_gene_4038_tx_20 1 - 34721 36045 . 2 408,781 0,544 -chrVIII 34727 36045 HC_gene_4038_tx_21 2 - 34727 36045 . 1 1319 0 -chrVIII 34730 36045 HC_gene_4038_tx_22 1 - 34730 36045 . 1 1316 0 -chrVIII 34731 35584 HC_gene_4038_tx_23 1 - 34731 35584 . 1 854 0 -chrVIII 34731 36045 HC_gene_4038_tx_24 2 - 34731 36045 . 1 1315 0 -chrVIII 34732 36045 HC_gene_4038_tx_25 1 - 34732 36045 . 1 1314 0 -chrVIII 34734 36045 HC_gene_4038_tx_26 1 - 34734 36045 . 1 1312 0 -chrVIII 34736 35482 HC_gene_4038_tx_27 1 - 34736 35482 . 1 747 0 -chrVIII 34736 35707 HC_gene_4038_tx_28 1 - 34736 35707 . 1 972 0 -chrVIII 34736 35816 HC_gene_4038_tx_29 1 - 34736 35816 . 1 1081 0 -chrVIII 34736 36045 HC_gene_4038_tx_30 20 - 34736 36045 . 1 1310 0 -chrVIII 34736 36045 HC_gene_4038_tx_31 1 - 34736 36045 . 2 474,768 0,542 -chrVIII 34736 36045 HC_gene_4038_tx_32 1 - 34736 36045 . 2 438,816 0,494 -chrVIII 34737 35482 HC_gene_4038_tx_33 2 - 34737 35482 . 1 746 0 -chrVIII 34737 35816 HC_gene_4038_tx_34 1 - 34737 35816 . 1 1080 0 -chrVIII 34737 36045 HC_gene_4038_tx_35 6 - 34737 36045 . 1 1309 0 -chrVIII 34738 35816 HC_gene_4038_tx_36 1 - 34738 35816 . 1 1079 0 -chrVIII 34738 36045 HC_gene_4038_tx_37 2 - 34738 36045 . 1 1308 0 -chrVIII 34739 36045 HC_gene_4038_tx_38 2 - 34739 36045 . 1 1307 0 -chrVIII 34740 35482 HC_gene_4038_tx_39 1 - 34740 35482 . 1 743 0 -chrVIII 34740 35584 HC_gene_4038_tx_40 1 - 34740 35584 . 1 845 0 -chrVIII 34740 36045 HC_gene_4038_tx_41 5 - 34740 36045 . 1 1306 0 -chrVIII 34740 36045 HC_gene_4038_tx_42 1 - 34740 36045 . 2 484,723 0,583 -chrVIII 34741 35584 HC_gene_4038_tx_43 1 - 34741 35584 . 1 844 0 -chrVIII 34741 35707 HC_gene_4038_tx_44 1 - 34741 35707 . 1 967 0 -chrVIII 34741 36045 HC_gene_4038_tx_45 3 - 34741 36045 . 1 1305 0 -chrVIII 34741 36045 HC_gene_4038_tx_46 1 - 34741 36045 . 2 452,768 0,537 -chrVIII 34742 35816 HC_gene_4038_tx_47 1 - 34742 35816 . 1 1075 0 -chrVIII 34743 35482 HC_gene_4038_tx_48 1 - 34743 35482 . 1 740 0 -chrVIII 34744 36045 HC_gene_4038_tx_49 1 - 34744 36045 . 2 506,735 0,567 -chrVIII 34744 36045 HC_gene_4038_tx_50 3 - 34744 36045 . 1 1302 0 -chrVIII 34748 35584 HC_gene_4038_tx_51 1 - 34748 35584 . 1 837 0 -chrVIII 34748 36045 HC_gene_4038_tx_52 1 - 34748 36045 . 1 1298 0 -chrVIII 34749 36045 HC_gene_4038_tx_53 1 - 34749 36045 . 2 459,781 0,516 -chrVIII 34749 36045 HC_gene_4038_tx_54 1 - 34749 36045 . 1 1297 0 -chrVIII 34751 35482 HC_gene_4038_tx_55 1 - 34751 35482 . 1 732 0 -chrVIII 34751 35584 HC_gene_4038_tx_56 1 - 34751 35584 . 1 834 0 -chrVIII 34751 36045 HC_gene_4038_tx_57 2 - 34751 36045 . 1 1295 0 -chrVIII 34752 36045 HC_gene_4038_tx_58 1 - 34752 36045 . 1 1294 0 -chrVIII 34753 36045 HC_gene_4038_tx_59 1 - 34753 36045 . 1 1293 0 -chrVIII 34754 36045 HC_gene_4038_tx_60 2 - 34754 36045 . 1 1292 0 -chrVIII 34755 35816 HC_gene_4038_tx_61 1 - 34755 35816 . 1 1062 0 -chrVIII 34755 36045 HC_gene_4038_tx_62 2 - 34755 36045 . 1 1291 0 -chrVIII 34756 36045 HC_gene_4038_tx_63 2 - 34756 36045 . 1 1290 0 -chrVIII 34757 35584 HC_gene_4038_tx_64 3 - 34757 35584 . 1 828 0 -chrVIII 34757 36045 HC_gene_4038_tx_65 5 - 34757 36045 . 1 1289 0 -chrVIII 34758 36045 HC_gene_4038_tx_66 4 - 34758 36045 . 1 1288 0 -chrVIII 34759 36045 HC_gene_4038_tx_67 4 - 34759 36045 . 1 1287 0 -chrVIII 34760 35482 HC_gene_4038_tx_68 2 - 34760 35482 . 1 723 0 -chrVIII 34760 35584 HC_gene_4038_tx_69 1 - 34760 35584 . 1 825 0 -chrVIII 34760 35707 HC_gene_4038_tx_70 1 - 34760 35707 . 1 948 0 -chrVIII 34760 36045 HC_gene_4038_tx_71 13 - 34760 36045 . 1 1286 0 -chrVIII 34761 35584 HC_gene_4038_tx_72 2 - 34761 35584 . 1 824 0 -chrVIII 34761 36045 HC_gene_4038_tx_73 2 - 34761 36045 . 1 1285 0 -chrVIII 34762 35482 HC_gene_4038_tx_74 2 - 34762 35482 . 1 721 0 -chrVIII 34762 35584 HC_gene_4038_tx_75 4 - 34762 35584 . 1 823 0 -chrVIII 34762 35707 HC_gene_4038_tx_76 1 - 34762 35707 . 1 946 0 -chrVIII 34762 36045 HC_gene_4038_tx_77 3 - 34762 36045 . 1 1284 0 -chrVIII 34763 35482 HC_gene_4038_tx_78 5 - 34763 35482 . 1 720 0 -chrVIII 34763 35584 HC_gene_4038_tx_79 4 - 34763 35584 . 1 822 0 -chrVIII 34763 35707 HC_gene_4038_tx_80 4 - 34763 35707 . 1 945 0 -chrVIII 34763 35816 HC_gene_4038_tx_81 3 - 34763 35816 . 1 1054 0 -chrVIII 34763 36045 HC_gene_4038_tx_82 32 - 34763 36045 . 1 1283 0 -chrVIII 34763 36045 HC_gene_4038_tx_83 1 - 34763 36045 . 2 613,615 0,668 -chrVIII 34763 36045 HC_gene_4038_tx_84 1 - 34763 36045 . 2 307,786 0,497 -chrVIII 34763 36045 HC_gene_4038_tx_85 1 - 34763 36045 . 2 463,768 0,515 -chrVIII 34763 36045 HC_gene_4038_tx_86 1 - 34763 36045 . 2 424,800 0,483 -chrVIII 34764 35482 HC_gene_4038_tx_87 1 - 34764 35482 . 1 719 0 -chrVIII 34764 35707 HC_gene_4038_tx_88 2 - 34764 35707 . 1 944 0 -chrVIII 34764 36045 HC_gene_4038_tx_89 11 - 34764 36045 . 1 1282 0 -chrVIII 34764 36045 HC_gene_4038_tx_90 1 - 34764 36045 . 2 433,786 0,496 -chrVIII 34765 35482 HC_gene_4038_tx_91 2 - 34765 35482 . 1 718 0 -chrVIII 34765 36045 HC_gene_4038_tx_92 1 - 34765 36045 . 2 433,781 0,500 -chrVIII 34765 36045 HC_gene_4038_tx_93 2 - 34765 36045 . 1 1281 0 -chrVIII 34765 36045 HC_gene_4038_tx_94 1 - 34765 36045 . 2 336,720 0,561 -chrVIII 34767 35482 HC_gene_4038_tx_95 1 - 34767 35482 . 1 716 0 -chrVIII 34767 35584 HC_gene_4038_tx_96 1 - 34767 35584 . 1 818 0 -chrVIII 34767 35707 HC_gene_4038_tx_97 1 - 34767 35707 . 1 941 0 -chrVIII 34767 35816 HC_gene_4038_tx_98 2 - 34767 35816 . 1 1050 0 -chrVIII 34767 36045 HC_gene_4038_tx_99 9 - 34767 36045 . 1 1279 0 -chrVIII 34768 35482 HC_gene_4038_tx_100 2 - 34768 35482 . 1 715 0 -chrVIII 34768 36045 HC_gene_4038_tx_101 1 - 34768 36045 . 2 406,768 0,510 -chrVIII 34768 36045 HC_gene_4038_tx_102 1 - 34768 36045 . 2 451,781 0,497 -chrVIII 34768 36045 HC_gene_4038_tx_103 4 - 34768 36045 . 1 1278 0 -chrVIII 34769 35482 HC_gene_4038_tx_104 1 - 34769 35482 . 1 714 0 -chrVIII 34769 35584 HC_gene_4038_tx_105 2 - 34769 35584 . 1 816 0 -chrVIII 34769 36045 HC_gene_4038_tx_106 6 - 34769 36045 . 1 1277 0 -chrVIII 34769 36045 HC_gene_4038_tx_107 1 - 34769 36045 . 2 413,768 0,509 -chrVIII 34771 35707 HC_gene_4038_tx_108 1 - 34771 35707 . 1 937 0 -chrVIII 34772 36045 HC_gene_4038_tx_109 2 - 34772 36045 . 1 1274 0 -chrVIII 34773 35584 HC_gene_4038_tx_110 1 - 34773 35584 . 1 812 0 -chrVIII 34773 35816 HC_gene_4038_tx_111 1 - 34773 35816 . 1 1044 0 -chrVIII 34773 36045 HC_gene_4038_tx_112 6 - 34773 36045 . 1 1273 0 -chrVIII 34773 36045 HC_gene_4038_tx_113 1 - 34773 36045 . 2 449,768 0,505 -chrVIII 34774 35707 HC_gene_4038_tx_114 1 - 34774 35707 . 1 934 0 -chrVIII 34774 36045 HC_gene_4038_tx_115 1 - 34774 36045 . 1 1272 0 -chrVIII 34775 35816 HC_gene_4038_tx_116 2 - 34775 35816 . 1 1042 0 -chrVIII 34775 36045 HC_gene_4038_tx_117 4 - 34775 36045 . 1 1271 0 -chrVIII 34776 35707 HC_gene_4038_tx_118 1 - 34776 35707 . 1 932 0 -chrVIII 34776 36045 HC_gene_4038_tx_119 5 - 34776 36045 . 1 1270 0 -chrVIII 34777 35482 HC_gene_4038_tx_120 1 - 34777 35482 . 1 706 0 -chrVIII 34777 36045 HC_gene_4038_tx_121 1 - 34777 36045 . 1 1269 0 -chrVIII 34778 35482 HC_gene_4038_tx_122 1 - 34778 35482 . 1 705 0 -chrVIII 34778 36045 HC_gene_4038_tx_123 1 - 34778 36045 . 1 1268 0 -chrVIII 34780 35482 HC_gene_4038_tx_124 1 - 34780 35482 . 1 703 0 -chrVIII 34780 35584 HC_gene_4038_tx_125 1 - 34780 35584 . 1 805 0 -chrVIII 34780 36045 HC_gene_4038_tx_126 2 - 34780 36045 . 1 1266 0 -chrVIII 34781 35584 HC_gene_4038_tx_127 1 - 34781 35584 . 1 804 0 -chrVIII 34781 36045 HC_gene_4038_tx_128 3 - 34781 36045 . 1 1265 0 -chrVIII 34792 35584 HC_gene_4038_tx_129 1 - 34792 35584 . 1 793 0 -chrVIII 34792 36045 HC_gene_4038_tx_130 2 - 34792 36045 . 1 1254 0 -chrVIII 34793 35707 HC_gene_4038_tx_131 1 - 34793 35707 . 1 915 0 -chrVIII 34793 36045 HC_gene_4038_tx_132 5 - 34793 36045 . 1 1253 0 -chrVIII 34794 35482 HC_gene_4038_tx_133 1 - 34794 35482 . 1 689 0 -chrVIII 34794 36045 HC_gene_4038_tx_134 1 - 34794 36045 . 1 1252 0 -chrVIII 34795 36045 HC_gene_4038_tx_135 1 - 34795 36045 . 1 1251 0 -chrVIII 34796 36045 HC_gene_4038_tx_136 3 - 34796 36045 . 1 1250 0 -chrVIII 34797 35482 HC_gene_4038_tx_137 1 - 34797 35482 . 1 686 0 -chrVIII 34797 35707 HC_gene_4038_tx_138 1 - 34797 35707 . 1 911 0 -chrVIII 34797 35816 HC_gene_4038_tx_139 1 - 34797 35816 . 1 1020 0 -chrVIII 34797 36045 HC_gene_4038_tx_140 4 - 34797 36045 . 1 1249 0 -chrVIII 34798 36045 HC_gene_4038_tx_141 2 - 34798 36045 . 1 1248 0 -chrVIII 34799 35816 HC_gene_4038_tx_142 1 - 34799 35816 . 1 1018 0 -chrVIII 34800 35584 HC_gene_4038_tx_143 1 - 34800 35584 . 1 785 0 -chrVIII 34800 36045 HC_gene_4038_tx_144 2 - 34800 36045 . 1 1246 0 -chrVIII 34801 35707 HC_gene_4038_tx_145 1 - 34801 35707 . 1 907 0 -chrVIII 34801 35816 HC_gene_4038_tx_146 1 - 34801 35816 . 1 1016 0 -chrVIII 34801 36045 HC_gene_4038_tx_147 9 - 34801 36045 . 1 1245 0 -chrVIII 34802 36045 HC_gene_4038_tx_148 17 - 34802 36045 . 1 1244 0 -chrVIII 34804 35584 HC_gene_4038_tx_149 1 - 34804 35584 . 1 781 0 -chrVIII 34804 36045 HC_gene_4038_tx_150 5 - 34804 36045 . 1 1242 0 -chrVIII 34805 36045 HC_gene_4038_tx_151 1 - 34805 36045 . 1 1241 0 -chrVIII 34806 35816 HC_gene_4038_tx_152 1 - 34806 35816 . 1 1011 0 -chrVIII 34807 35584 HC_gene_4038_tx_153 1 - 34807 35584 . 1 778 0 -chrVIII 34807 36045 HC_gene_4038_tx_154 1 - 34807 36045 . 1 1239 0 -chrVIII 34808 36045 HC_gene_4038_tx_155 1 - 34808 36045 . 1 1238 0 -chrVIII 34809 36045 HC_gene_4038_tx_156 1 - 34809 36045 . 1 1237 0 -chrVIII 34811 35584 HC_gene_4038_tx_157 1 - 34811 35584 . 1 774 0 -chrVIII 34811 36045 HC_gene_4038_tx_158 7 - 34811 36045 . 1 1235 0 -chrVIII 34811 36045 HC_gene_4038_tx_159 1 - 34811 36045 . 2 390,768 0,467 -chrVIII 34812 35584 HC_gene_4038_tx_160 2 - 34812 35584 . 1 773 0 -chrVIII 34812 36045 HC_gene_4038_tx_161 6 - 34812 36045 . 1 1234 0 -chrVIII 34812 36045 HC_gene_4038_tx_162 1 - 34812 36045 . 2 386,744 0,490 -chrVIII 34817 36045 HC_gene_4038_tx_163 1 - 34817 36045 . 1 1229 0 -chrVIII 34820 35584 HC_gene_4038_tx_164 1 - 34820 35584 . 1 765 0 -chrVIII 34820 36045 HC_gene_4038_tx_165 2 - 34820 36045 . 1 1226 0 -chrVIII 34821 36045 HC_gene_4038_tx_166 1 - 34821 36045 . 1 1225 0 -chrVIII 34822 36045 HC_gene_4038_tx_167 1 - 34822 36045 . 1 1224 0 -chrVIII 34824 35707 HC_gene_4038_tx_168 1 - 34824 35707 . 1 884 0 -chrVIII 34826 36045 HC_gene_4038_tx_169 1 - 34826 36045 . 1 1220 0 -chrVIII 34831 36045 HC_gene_4038_tx_170 1 - 34831 36045 . 1 1215 0 -chrVIII 34838 35584 HC_gene_4038_tx_171 1 - 34838 35584 . 1 747 0 -chrVIII 34838 36045 HC_gene_4038_tx_172 3 - 34838 36045 . 1 1208 0 -chrVIII 34839 36045 HC_gene_4038_tx_173 1 - 34839 36045 . 1 1207 0 -chrVIII 34840 35584 HC_gene_4038_tx_174 1 - 34840 35584 . 1 745 0 -chrVIII 34842 35482 HC_gene_4038_tx_175 1 - 34842 35482 . 1 641 0 -chrVIII 34842 35584 HC_gene_4038_tx_176 1 - 34842 35584 . 1 743 0 -chrVIII 34844 36045 HC_gene_4038_tx_177 1 - 34844 36045 . 1 1202 0 -chrVIII 34845 36045 HC_gene_4038_tx_178 1 - 34845 36045 . 1 1201 0 -chrVIII 34846 36045 HC_gene_4038_tx_179 1 - 34846 36045 . 1 1200 0 -chrVIII 34847 35584 HC_gene_4038_tx_180 1 - 34847 35584 . 1 738 0 -chrVIII 34847 36045 HC_gene_4038_tx_181 1 - 34847 36045 . 1 1199 0 -chrVIII 34848 35584 HC_gene_4038_tx_182 1 - 34848 35584 . 1 737 0 -chrVIII 34848 36045 HC_gene_4038_tx_183 1 - 34848 36045 . 1 1198 0 -chrVIII 34849 35707 HC_gene_4038_tx_184 1 - 34849 35707 . 1 859 0 -chrVIII 34850 35482 HC_gene_4038_tx_185 3 - 34850 35482 . 1 633 0 -chrVIII 34850 35584 HC_gene_4038_tx_186 1 - 34850 35584 . 1 735 0 -chrVIII 34850 35816 HC_gene_4038_tx_187 1 - 34850 35816 . 1 967 0 -chrVIII 34850 36045 HC_gene_4038_tx_188 4 - 34850 36045 . 1 1196 0 -chrVIII 34851 36045 HC_gene_4038_tx_189 1 - 34851 36045 . 1 1195 0 -chrVIII 34852 35482 HC_gene_4038_tx_190 1 - 34852 35482 . 1 631 0 -chrVIII 34852 36045 HC_gene_4038_tx_191 2 - 34852 36045 . 1 1194 0 -chrVIII 34853 35584 HC_gene_4038_tx_192 1 - 34853 35584 . 1 732 0 -chrVIII 34853 36045 HC_gene_4038_tx_193 4 - 34853 36045 . 1 1193 0 -chrVIII 34854 35584 HC_gene_4038_tx_194 1 - 34854 35584 . 1 731 0 -chrVIII 34854 35816 HC_gene_4038_tx_195 1 - 34854 35816 . 1 963 0 -chrVIII 34854 36045 HC_gene_4038_tx_196 1 - 34854 36045 . 1 1192 0 -chrVIII 34855 36045 HC_gene_4038_tx_197 1 - 34855 36045 . 1 1191 0 -chrVIII 34857 35816 HC_gene_4038_tx_198 1 - 34857 35816 . 1 960 0 -chrVIII 34857 36045 HC_gene_4038_tx_199 1 - 34857 36045 . 1 1189 0 -chrVIII 34858 35816 HC_gene_4038_tx_200 1 - 34858 35816 . 1 959 0 -chrVIII 34858 36045 HC_gene_4038_tx_201 8 - 34858 36045 . 1 1188 0 -chrVIII 34859 35482 HC_gene_4038_tx_202 1 - 34859 35482 . 1 624 0 -chrVIII 34859 36045 HC_gene_4038_tx_203 2 - 34859 36045 . 1 1187 0 -chrVIII 34860 35482 HC_gene_4038_tx_204 1 - 34860 35482 . 1 623 0 -chrVIII 34860 36045 HC_gene_4038_tx_205 1 - 34860 36045 . 1 1186 0 -chrVIII 34863 36045 HC_gene_4038_tx_206 2 - 34863 36045 . 1 1183 0 -chrVIII 34866 36045 HC_gene_4038_tx_207 2 - 34866 36045 . 1 1180 0 -chrVIII 34867 36045 HC_gene_4038_tx_208 1 - 34867 36045 . 1 1179 0 -chrVIII 34868 36045 HC_gene_4038_tx_209 1 - 34868 36045 . 1 1178 0 -chrVIII 34869 35816 HC_gene_4038_tx_210 1 - 34869 35816 . 1 948 0 -chrVIII 34869 36045 HC_gene_4038_tx_211 4 - 34869 36045 . 1 1177 0 -chrVIII 34871 35584 HC_gene_4038_tx_212 1 - 34871 35584 . 1 714 0 -chrVIII 34871 36045 HC_gene_4038_tx_213 1 - 34871 36045 . 1 1175 0 -chrVIII 34872 35707 HC_gene_4038_tx_214 1 - 34872 35707 . 1 836 0 -chrVIII 34872 36045 HC_gene_4038_tx_215 4 - 34872 36045 . 1 1174 0 -chrVIII 34874 35584 HC_gene_4038_tx_216 1 - 34874 35584 . 1 711 0 -chrVIII 34874 36045 HC_gene_4038_tx_217 3 - 34874 36045 . 1 1172 0 -chrVIII 34875 35482 HC_gene_4038_tx_218 1 - 34875 35482 . 1 608 0 -chrVIII 34875 35816 HC_gene_4038_tx_219 1 - 34875 35816 . 1 942 0 -chrVIII 34875 36045 HC_gene_4038_tx_220 5 - 34875 36045 . 1 1171 0 -chrVIII 34877 35707 HC_gene_4038_tx_221 1 - 34877 35707 . 1 831 0 -chrVIII 34877 36045 HC_gene_4038_tx_222 1 - 34877 36045 . 1 1169 0 -chrVIII 34878 35482 HC_gene_4038_tx_223 2 - 34878 35482 . 1 605 0 -chrVIII 34878 36045 HC_gene_4038_tx_224 3 - 34878 36045 . 1 1168 0 -chrVIII 34880 36045 HC_gene_4038_tx_225 1 - 34880 36045 . 1 1166 0 -chrVIII 34882 35482 HC_gene_4038_tx_226 1 - 34882 35482 . 1 601 0 -chrVIII 34882 35584 HC_gene_4038_tx_227 3 - 34882 35584 . 1 703 0 -chrVIII 34882 35707 HC_gene_4038_tx_228 1 - 34882 35707 . 1 826 0 -chrVIII 34882 36045 HC_gene_4038_tx_229 3 - 34882 36045 . 1 1164 0 -chrVIII 34883 35482 HC_gene_4038_tx_230 1 - 34883 35482 . 1 600 0 -chrVIII 34885 35707 HC_gene_4038_tx_231 1 - 34885 35707 . 1 823 0 -chrVIII 34885 36045 HC_gene_4038_tx_232 2 - 34885 36045 . 1 1161 0 -chrVIII 34886 36045 HC_gene_4038_tx_233 1 - 34886 36045 . 1 1160 0 -chrVIII 34888 35584 HC_gene_4038_tx_234 1 - 34888 35584 . 1 697 0 -chrVIII 34888 35816 HC_gene_4038_tx_235 1 - 34888 35816 . 1 929 0 -chrVIII 34888 36045 HC_gene_4038_tx_236 9 - 34888 36045 . 1 1158 0 -chrVIII 34889 35482 HC_gene_4038_tx_237 2 - 34889 35482 . 1 594 0 -chrVIII 34889 35584 HC_gene_4038_tx_238 2 - 34889 35584 . 1 696 0 -chrVIII 34889 35816 HC_gene_4038_tx_239 1 - 34889 35816 . 1 928 0 -chrVIII 34889 36045 HC_gene_4038_tx_240 3 - 34889 36045 . 1 1157 0 -chrVIII 34890 35584 HC_gene_4038_tx_241 1 - 34890 35584 . 1 695 0 -chrVIII 34890 36045 HC_gene_4038_tx_242 4 - 34890 36045 . 1 1156 0 -chrVIII 34893 35816 HC_gene_4038_tx_243 1 - 34893 35816 . 1 924 0 -chrVIII 34897 36045 HC_gene_4038_tx_244 1 - 34897 36045 . 1 1149 0 -chrVIII 34898 36045 HC_gene_4038_tx_245 2 - 34898 36045 . 1 1148 0 -chrVIII 35076 35584 HC_gene_4038_tx_290 1 - 35076 35584 . 1 509 0 -chrVIII 35081 35482 HC_gene_4038_tx_316 1 - 35081 35482 . 1 402 0 -chrVIII 35082 36045 HC_gene_4038_tx_246 1 - 35082 36045 . 1 964 0 -chrVIII 35083 35816 HC_gene_4038_tx_329 1 - 35083 35816 . 1 734 0 -chrVIII 35092 36045 HC_gene_4038_tx_247 1 - 35092 36045 . 1 954 0 -chrVIII 35124 35816 HC_gene_4038_tx_330 1 - 35124 35816 . 1 693 0 -chrVIII 35125 35816 HC_gene_4038_tx_331 1 - 35125 35816 . 1 692 0 -chrVIII 35130 35482 HC_gene_4038_tx_317 3 - 35130 35482 . 1 353 0 -chrVIII 35130 35707 HC_gene_4038_tx_332 1 - 35130 35707 . 1 578 0 -chrVIII 35130 36045 HC_gene_4038_tx_248 1 - 35130 36045 . 1 916 0 -chrVIII 35131 35584 HC_gene_4038_tx_291 1 - 35131 35584 . 1 454 0 -chrVIII 35132 35707 HC_gene_4038_tx_333 1 - 35132 35707 . 1 576 0 -chrVIII 35132 36045 HC_gene_4038_tx_249 1 - 35132 36045 . 1 914 0 -chrVIII 35135 35584 HC_gene_4038_tx_292 1 - 35135 35584 . 1 450 0 -chrVIII 35135 36045 HC_gene_4038_tx_250 1 - 35135 36045 . 1 911 0 -chrVIII 35138 36045 HC_gene_4038_tx_251 1 - 35138 36045 . 1 908 0 -chrVIII 35139 35482 HC_gene_4038_tx_318 6 - 35139 35482 . 1 344 0 -chrVIII 35139 35584 HC_gene_4038_tx_293 3 - 35139 35584 . 1 446 0 -chrVIII 35139 35707 HC_gene_4038_tx_334 2 - 35139 35707 . 1 569 0 -chrVIII 35139 35816 HC_gene_4038_tx_335 2 - 35139 35816 . 1 678 0 -chrVIII 35139 36045 HC_gene_4038_tx_252 11 - 35139 36045 . 1 907 0 -chrVIII 35140 35584 HC_gene_4038_tx_294 1 - 35140 35584 . 1 445 0 -chrVIII 35146 35816 HC_gene_4038_tx_336 1 - 35146 35816 . 1 671 0 -chrVIII 35147 36045 HC_gene_4038_tx_253 2 - 35147 36045 . 1 899 0 -chrVIII 35148 36045 HC_gene_4038_tx_254 1 - 35148 36045 . 1 898 0 -chrVIII 35149 36045 HC_gene_4038_tx_255 2 - 35149 36045 . 1 897 0 -chrVIII 35151 36045 HC_gene_4038_tx_256 1 - 35151 36045 . 1 895 0 -chrVIII 35158 35584 HC_gene_4038_tx_295 1 - 35158 35584 . 1 427 0 -chrVIII 35160 36045 HC_gene_4038_tx_257 1 - 35160 36045 . 1 886 0 -chrVIII 35161 35584 HC_gene_4038_tx_296 1 - 35161 35584 . 1 424 0 -chrVIII 35161 36045 HC_gene_4038_tx_258 2 - 35161 36045 . 1 885 0 -chrVIII 35163 36045 HC_gene_4038_tx_259 2 - 35163 36045 . 1 883 0 -chrVIII 35164 36045 HC_gene_4038_tx_260 1 - 35164 36045 . 1 882 0 -chrVIII 35165 35584 HC_gene_4038_tx_297 5 - 35165 35584 . 1 420 0 -chrVIII 35165 35707 HC_gene_4038_tx_337 1 - 35165 35707 . 1 543 0 -chrVIII 35165 35816 HC_gene_4038_tx_338 3 - 35165 35816 . 1 652 0 -chrVIII 35165 36045 HC_gene_4038_tx_261 11 - 35165 36045 . 1 881 0 -chrVIII 35166 35584 HC_gene_4038_tx_298 1 - 35166 35584 . 1 419 0 -chrVIII 35166 35707 HC_gene_4038_tx_339 1 - 35166 35707 . 1 542 0 -chrVIII 35167 35482 HC_gene_4038_tx_319 1 - 35167 35482 . 1 316 0 -chrVIII 35167 35584 HC_gene_4038_tx_299 2 - 35167 35584 . 1 418 0 -chrVIII 35167 35707 HC_gene_4038_tx_340 2 - 35167 35707 . 1 541 0 -chrVIII 35167 35816 HC_gene_4038_tx_341 2 - 35167 35816 . 1 650 0 -chrVIII 35167 36045 HC_gene_4038_tx_262 17 - 35167 36045 . 1 879 0 -chrVIII 35168 35482 HC_gene_4038_tx_320 1 - 35168 35482 . 1 315 0 -chrVIII 35168 35707 HC_gene_4038_tx_342 1 - 35168 35707 . 1 540 0 -chrVIII 35168 35816 HC_gene_4038_tx_343 1 - 35168 35816 . 1 649 0 -chrVIII 35168 36045 HC_gene_4038_tx_263 14 - 35168 36045 . 1 878 0 -chrVIII 35169 35482 HC_gene_4038_tx_321 1 - 35169 35482 . 1 314 0 -chrVIII 35169 35584 HC_gene_4038_tx_300 2 - 35169 35584 . 1 416 0 -chrVIII 35169 35707 HC_gene_4038_tx_344 3 - 35169 35707 . 1 539 0 -chrVIII 35169 35816 HC_gene_4038_tx_345 2 - 35169 35816 . 1 648 0 -chrVIII 35169 36045 HC_gene_4038_tx_264 20 - 35169 36045 . 1 877 0 -chrVIII 35170 35584 HC_gene_4038_tx_301 1 - 35170 35584 . 1 415 0 -chrVIII 35170 35707 HC_gene_4038_tx_346 1 - 35170 35707 . 1 538 0 -chrVIII 35170 36045 HC_gene_4038_tx_265 1 - 35170 36045 . 1 876 0 -chrVIII 35171 35584 HC_gene_4038_tx_302 1 - 35171 35584 . 1 414 0 -chrVIII 35171 36045 HC_gene_4038_tx_266 4 - 35171 36045 . 1 875 0 -chrVIII 35172 36045 HC_gene_4038_tx_267 3 - 35172 36045 . 1 874 0 -chrVIII 35173 35482 HC_gene_4038_tx_322 1 - 35173 35482 . 1 310 0 -chrVIII 35173 35584 HC_gene_4038_tx_303 1 - 35173 35584 . 1 412 0 -chrVIII 35173 35707 HC_gene_4038_tx_347 1 - 35173 35707 . 1 535 0 -chrVIII 35173 36045 HC_gene_4038_tx_268 7 - 35173 36045 . 1 873 0 -chrVIII 35174 35584 HC_gene_4038_tx_304 1 - 35174 35584 . 1 411 0 -chrVIII 35174 36045 HC_gene_4038_tx_269 3 - 35174 36045 . 1 872 0 -chrVIII 35175 35816 HC_gene_4038_tx_348 1 - 35175 35816 . 1 642 0 -chrVIII 35175 36045 HC_gene_4038_tx_270 1 - 35175 36045 . 1 871 0 -chrVIII 35176 35707 HC_gene_4038_tx_349 1 - 35176 35707 . 1 532 0 -chrVIII 35176 36045 HC_gene_4038_tx_271 1 - 35176 36045 . 1 870 0 -chrVIII 35177 35707 HC_gene_4038_tx_350 1 - 35177 35707 . 1 531 0 -chrVIII 35177 36045 HC_gene_4038_tx_272 5 - 35177 36045 . 1 869 0 -chrVIII 35178 35707 HC_gene_4038_tx_351 2 - 35178 35707 . 1 530 0 -chrVIII 35178 36045 HC_gene_4038_tx_273 2 - 35178 36045 . 1 868 0 -chrVIII 35178 36045 HC_gene_4038_tx_274 1 - 35178 36045 . 2 701,75 0,793 -chrVIII 35179 36045 HC_gene_4038_tx_275 3 - 35179 36045 . 1 867 0 -chrVIII 35180 35482 HC_gene_4038_tx_323 2 - 35180 35482 . 1 303 0 -chrVIII 35180 35584 HC_gene_4038_tx_305 4 - 35180 35584 . 1 405 0 -chrVIII 35180 35816 HC_gene_4038_tx_352 3 - 35180 35816 . 1 637 0 -chrVIII 35180 36045 HC_gene_4038_tx_276 8 - 35180 36045 . 1 866 0 -chrVIII 35181 35482 HC_gene_4038_tx_324 1 - 35181 35482 . 1 302 0 -chrVIII 35181 35584 HC_gene_4038_tx_306 2 - 35181 35584 . 1 404 0 -chrVIII 35181 36045 HC_gene_4038_tx_277 5 - 35181 36045 . 1 865 0 -chrVIII 35182 36045 HC_gene_4038_tx_278 2 - 35182 36045 . 1 864 0 -chrVIII 35183 36045 HC_gene_4038_tx_279 2 - 35183 36045 . 1 863 0 -chrVIII 35184 35482 HC_gene_4038_tx_325 1 - 35184 35482 . 1 299 0 -chrVIII 35184 35584 HC_gene_4038_tx_307 3 - 35184 35584 . 1 401 0 -chrVIII 35184 36045 HC_gene_4038_tx_280 10 - 35184 36045 . 1 862 0 -chrVIII 35185 35482 HC_gene_4038_tx_326 1 - 35185 35482 . 1 298 0 -chrVIII 35185 35584 HC_gene_4038_tx_308 5 - 35185 35584 . 1 400 0 -chrVIII 35185 35707 HC_gene_4038_tx_353 3 - 35185 35707 . 1 523 0 -chrVIII 35185 35816 HC_gene_4038_tx_354 6 - 35185 35816 . 1 632 0 -chrVIII 35185 36045 HC_gene_4038_tx_281 13 - 35185 36045 . 1 861 0 -chrVIII 35186 35584 HC_gene_4038_tx_309 4 - 35186 35584 . 1 399 0 -chrVIII 35186 35707 HC_gene_4038_tx_355 1 - 35186 35707 . 1 522 0 -chrVIII 35186 35816 HC_gene_4038_tx_356 3 - 35186 35816 . 1 631 0 -chrVIII 35186 36045 HC_gene_4038_tx_282 19 - 35186 36045 . 1 860 0 -chrVIII 35187 35584 HC_gene_4038_tx_310 1 - 35187 35584 . 1 398 0 -chrVIII 35187 36045 HC_gene_4038_tx_283 1 - 35187 36045 . 1 859 0 -chrVIII 35189 35584 HC_gene_4038_tx_311 1 - 35189 35584 . 1 396 0 -chrVIII 35189 35707 HC_gene_4038_tx_357 3 - 35189 35707 . 1 519 0 -chrVIII 35189 35816 HC_gene_4038_tx_358 2 - 35189 35816 . 1 628 0 -chrVIII 35189 36045 HC_gene_4038_tx_284 11 - 35189 36045 . 1 857 0 -chrVIII 35190 35482 HC_gene_4038_tx_327 1 - 35190 35482 . 1 293 0 -chrVIII 35190 35584 HC_gene_4038_tx_312 3 - 35190 35584 . 1 395 0 -chrVIII 35190 35707 HC_gene_4038_tx_359 3 - 35190 35707 . 1 518 0 -chrVIII 35190 35816 HC_gene_4038_tx_360 1 - 35190 35816 . 1 627 0 -chrVIII 35190 36045 HC_gene_4038_tx_285 16 - 35190 36045 . 1 856 0 -chrVIII 35191 35584 HC_gene_4038_tx_313 1 - 35191 35584 . 1 394 0 -chrVIII 35191 35707 HC_gene_4038_tx_361 1 - 35191 35707 . 1 517 0 -chrVIII 35191 36045 HC_gene_4038_tx_286 6 - 35191 36045 . 1 855 0 -chrVIII 35192 35584 HC_gene_4038_tx_314 1 - 35192 35584 . 1 393 0 -chrVIII 35192 36045 HC_gene_4038_tx_287 2 - 35192 36045 . 1 854 0 -chrVIII 35193 35707 HC_gene_4038_tx_362 1 - 35193 35707 . 1 515 0 -chrVIII 35193 35816 HC_gene_4038_tx_363 1 - 35193 35816 . 1 624 0 -chrVIII 35193 36045 HC_gene_4038_tx_288 6 - 35193 36045 . 1 853 0 -chrVIII 35194 35482 HC_gene_4038_tx_328 3 - 35194 35482 . 1 289 0 -chrVIII 35194 35584 HC_gene_4038_tx_315 3 - 35194 35584 . 1 391 0 -chrVIII 35194 35707 HC_gene_4038_tx_364 3 - 35194 35707 . 1 514 0 -chrVIII 35194 35816 HC_gene_4038_tx_365 2 - 35194 35816 . 1 623 0 -chrVIII 35194 36045 HC_gene_4038_tx_289 13 - 35194 36045 . 1 852 0 -chrVIII 36318 38244 HC_gene_4039_tx_1 4 - 36318 38244 . 1 1927 0 -chrVIII 36318 38588 HC_gene_4039_tx_2 11 - 36318 38588 . 1 2271 0 -chrVIII 36425 38446 LC_gene_3807_tx_1 1 + 36425 38446 . 1 2022 0 -chrVIII 38746 39271 HC_gene_4040_tx_1 14 - 38746 39271 . 1 526 0 -chrVIII 38746 39498 HC_gene_4040_tx_2 62 - 38746 39498 . 1 753 0 -chrVIII 38860 39491 LC_gene_3808_tx_1 1 + 38860 39491 . 1 632 0 -chrVIII 40045 42310 MC_gene_3809_tx_1 1 + 40045 42310 . 1 2266 0 -chrVIII 44706 45691 HC_gene_3810_tx_1 3 + 44706 45691 . 1 986 0 -chrVIII 44706 45786 HC_gene_3810_tx_2 2 + 44706 45786 . 1 1081 0 -chrVIII 44815 45691 HC_gene_3810_tx_3 3 + 44815 45691 . 1 877 0 -chrVIII 44815 45786 HC_gene_3810_tx_4 7 + 44815 45786 . 1 972 0 -chrVIII 44899 45691 HC_gene_3810_tx_5 1 + 44899 45691 . 1 793 0 -chrVIII 44899 45786 HC_gene_3810_tx_6 4 + 44899 45786 . 1 888 0 -chrVIII 45688 47263 HC_gene_4041_tx_1 2 - 45688 47263 . 1 1576 0 -chrVIII 45688 47988 HC_gene_4041_tx_3 3 - 45688 47988 . 1 2301 0 -chrVIII 45822 47263 HC_gene_4041_tx_2 8 - 45822 47263 . 1 1442 0 -chrVIII 45822 47988 HC_gene_4041_tx_4 17 - 45822 47988 . 1 2167 0 -chrVIII 45822 47988 HC_gene_4041_tx_5 1 - 45822 47988 . 2 1353,477 0,1690 -chrVIII 45822 47988 HC_gene_4041_tx_6 1 - 45822 47988 . 2 1056,1040 0,1127 -chrVIII 45822 47988 HC_gene_4041_tx_7 1 - 45822 47988 . 2 1083,1033 0,1134 -chrVIII 48317 48744 HC_gene_3811_tx_1 2 + 48317 48744 . 1 428 0 -chrVIII 48694 50660 HC_gene_3812_tx_1 3 + 48694 50660 . 1 1967 0 -chrVIII 49855 50660 HC_gene_3812_tx_2 3 + 49855 50660 . 1 806 0 -chrVIII 51015 53200 HC_gene_3813_tx_1 18 + 51015 53200 . 1 2186 0 -chrVIII 51015 53200 HC_gene_3813_tx_2 1 + 51015 53200 . 2 1480,646 0,1540 -chrVIII 51015 53200 HC_gene_3813_tx_3 1 + 51015 53200 . 2 1164,930 0,1256 -chrVIII 51417 53200 HC_gene_3813_tx_4 1 + 51417 53200 . 1 1784 0 -chrVIII 51670 53200 HC_gene_3813_tx_5 1 + 51670 53200 . 1 1531 0 -chrVIII 53099 54232 HC_gene_4042_tx_1 13 - 53099 54232 . 1 1134 0 -chrVIII 53099 54356 HC_gene_4042_tx_2 4 - 53099 54356 . 1 1258 0 -chrVIII 54658 55235 MC_gene_4043_tx_1 1 - 54658 55235 . 1 578 0 -chrVIII 54792 55953 HC_gene_3814_tx_1 73 + 54792 55953 . 1 1162 0 -chrVIII 54988 55953 HC_gene_3814_tx_2 19 + 54988 55953 . 1 966 0 -chrVIII 55495 55814 MC_gene_4044_tx_1 1 - 55495 55814 . 1 320 0 -chrVIII 55577 55953 HC_gene_3814_tx_3 21 + 55577 55953 . 1 377 0 -chrVIII 56499 56921 HC_gene_4045_tx_1 4 - 56499 56921 . 1 423 0 -chrVIII 57104 59020 LC_gene_3815_tx_1 1 + 57104 59020 . 1 1917 0 -chrVIII 57415 59010 HC_gene_4046_tx_1 1 - 57415 59010 . 1 1596 0 -chrVIII 59092 62596 MC_gene_4047_tx_1 1 - 59092 62596 . 1 3505 0 -chrVIII 59127 59346 HC_gene_3816_tx_1 1 + 59127 59346 . 1 220 0 -chrVIII 59127 60112 HC_gene_3816_tx_2 1 + 59127 60112 . 1 986 0 -chrVIII 61140 62366 LC_gene_3817_tx_1 1 + 61140 62366 . 1 1227 0 -chrVIII 62812 63450 HC_gene_4048_tx_1 1 - 62812 63450 . 1 639 0 -chrVIII 62863 63450 HC_gene_4048_tx_2 5 - 62863 63450 . 1 588 0 -chrVIII 62963 64265 LC_gene_3818_tx_1 1 + 62963 64265 . 1 1303 0 -chrVIII 64330 65258 HC_gene_4049_tx_1 1 - 64330 65258 . 1 929 0 -chrVIII 64332 65920 HC_gene_4049_tx_2 1 - 64332 65920 . 1 1589 0 -chrVIII 64333 64962 HC_gene_4049_tx_46 2 - 64333 64962 . 1 630 0 -chrVIII 64333 65920 HC_gene_4049_tx_3 1 - 64333 65920 . 1 1588 0 -chrVIII 64334 65920 HC_gene_4049_tx_4 1 - 64334 65920 . 1 1587 0 -chrVIII 64335 64962 HC_gene_4049_tx_47 1 - 64335 64962 . 1 628 0 -chrVIII 64335 65615 HC_gene_4049_tx_5 1 - 64335 65615 . 1 1281 0 -chrVIII 64335 65920 HC_gene_4049_tx_6 1 - 64335 65920 . 1 1586 0 -chrVIII 64337 64962 HC_gene_4049_tx_48 2 - 64337 64962 . 1 626 0 -chrVIII 64337 65920 HC_gene_4049_tx_7 3 - 64337 65920 . 1 1584 0 -chrVIII 64338 65920 HC_gene_4049_tx_8 1 - 64338 65920 . 1 1583 0 -chrVIII 64342 64678 HC_gene_4049_tx_60 1 - 64342 64678 . 1 337 0 -chrVIII 64343 65388 HC_gene_4049_tx_9 1 - 64343 65388 . 1 1046 0 -chrVIII 64343 65920 HC_gene_4049_tx_10 1 - 64343 65920 . 1 1578 0 -chrVIII 64345 65920 HC_gene_4049_tx_11 1 - 64345 65920 . 1 1576 0 -chrVIII 64346 65258 HC_gene_4049_tx_12 1 - 64346 65258 . 1 913 0 -chrVIII 64346 65388 HC_gene_4049_tx_13 1 - 64346 65388 . 1 1043 0 -chrVIII 64346 65920 HC_gene_4049_tx_14 1 - 64346 65920 . 1 1575 0 -chrVIII 64349 65258 HC_gene_4049_tx_15 1 - 64349 65258 . 1 910 0 -chrVIII 64355 64962 HC_gene_4049_tx_49 1 - 64355 64962 . 1 608 0 -chrVIII 64355 65920 HC_gene_4049_tx_16 2 - 64355 65920 . 1 1566 0 -chrVIII 64356 64678 HC_gene_4049_tx_61 1 - 64356 64678 . 1 323 0 -chrVIII 64356 64962 HC_gene_4049_tx_50 1 - 64356 64962 . 1 607 0 -chrVIII 64356 65258 HC_gene_4049_tx_17 1 - 64356 65258 . 1 903 0 -chrVIII 64356 65920 HC_gene_4049_tx_18 1 - 64356 65920 . 1 1565 0 -chrVIII 64357 65920 HC_gene_4049_tx_19 1 - 64357 65920 . 1 1564 0 -chrVIII 64358 65388 HC_gene_4049_tx_20 1 - 64358 65388 . 1 1031 0 -chrVIII 64358 65615 HC_gene_4049_tx_21 2 - 64358 65615 . 1 1258 0 -chrVIII 64359 64962 HC_gene_4049_tx_51 1 - 64359 64962 . 1 604 0 -chrVIII 64359 65388 HC_gene_4049_tx_22 1 - 64359 65388 . 1 1030 0 -chrVIII 64360 64962 HC_gene_4049_tx_52 1 - 64360 64962 . 1 603 0 -chrVIII 64361 64678 HC_gene_4049_tx_62 1 - 64361 64678 . 1 318 0 -chrVIII 64362 64962 HC_gene_4049_tx_53 1 - 64362 64962 . 1 601 0 -chrVIII 64362 65258 HC_gene_4049_tx_23 1 - 64362 65258 . 1 897 0 -chrVIII 64362 65388 HC_gene_4049_tx_24 1 - 64362 65388 . 1 1027 0 -chrVIII 64363 65388 HC_gene_4049_tx_25 1 - 64363 65388 . 1 1026 0 -chrVIII 64363 65920 HC_gene_4049_tx_26 1 - 64363 65920 . 1 1558 0 -chrVIII 64367 64962 HC_gene_4049_tx_54 2 - 64367 64962 . 1 596 0 -chrVIII 64367 65258 HC_gene_4049_tx_27 1 - 64367 65258 . 1 892 0 -chrVIII 64367 65920 HC_gene_4049_tx_28 2 - 64367 65920 . 1 1554 0 -chrVIII 64368 65920 HC_gene_4049_tx_29 1 - 64368 65920 . 1 1553 0 -chrVIII 64369 64962 HC_gene_4049_tx_55 3 - 64369 64962 . 1 594 0 -chrVIII 64369 65258 HC_gene_4049_tx_30 1 - 64369 65258 . 1 890 0 -chrVIII 64369 65615 HC_gene_4049_tx_31 1 - 64369 65615 . 1 1247 0 -chrVIII 64369 65920 HC_gene_4049_tx_32 1 - 64369 65920 . 1 1552 0 -chrVIII 64370 64962 HC_gene_4049_tx_56 1 - 64370 64962 . 1 593 0 -chrVIII 64377 64962 HC_gene_4049_tx_57 1 - 64377 64962 . 1 586 0 -chrVIII 64377 65615 HC_gene_4049_tx_33 1 - 64377 65615 . 1 1239 0 -chrVIII 64377 65920 HC_gene_4049_tx_34 2 - 64377 65920 . 1 1544 0 -chrVIII 64379 64962 HC_gene_4049_tx_58 1 - 64379 64962 . 1 584 0 -chrVIII 64379 65258 HC_gene_4049_tx_35 1 - 64379 65258 . 1 880 0 -chrVIII 64379 65615 HC_gene_4049_tx_36 2 - 64379 65615 . 1 1237 0 -chrVIII 64379 65920 HC_gene_4049_tx_37 1 - 64379 65920 . 1 1542 0 -chrVIII 64380 64678 HC_gene_4049_tx_63 1 - 64380 64678 . 1 299 0 -chrVIII 64380 64962 HC_gene_4049_tx_59 2 - 64380 64962 . 1 583 0 -chrVIII 64380 65258 HC_gene_4049_tx_38 2 - 64380 65258 . 1 879 0 -chrVIII 64380 65388 HC_gene_4049_tx_39 1 - 64380 65388 . 1 1009 0 -chrVIII 64380 65615 HC_gene_4049_tx_40 1 - 64380 65615 . 1 1236 0 -chrVIII 64380 65697 HC_gene_4049_tx_41 1 - 64380 65697 . 1 1318 0 -chrVIII 64380 65920 HC_gene_4049_tx_42 3 - 64380 65920 . 1 1541 0 -chrVIII 64381 65697 HC_gene_4049_tx_43 1 - 64381 65697 . 1 1317 0 -chrVIII 64381 65920 HC_gene_4049_tx_44 1 - 64381 65920 . 1 1540 0 -chrVIII 64382 65920 HC_gene_4049_tx_45 1 - 64382 65920 . 1 1539 0 -chrVIII 64524 64991 HC_gene_3819_tx_1 10 + 64524 64991 . 1 468 0 -chrVIII 65716 66285 MC_gene_3820_tx_1 1 + 65716 66285 . 1 570 0 -chrVIII 66115 67541 MC_gene_4050_tx_1 1 - 66115 67541 . 1 1427 0 -chrVIII 66141 67393 MC_gene_4050_tx_2 1 - 66141 67393 . 1 1253 0 -chrVIII 66229 66979 MC_gene_3821_tx_1 1 + 66229 66979 . 1 751 0 -chrVIII 67639 69583 HC_gene_4051_tx_1 11 - 67639 69583 . 1 1945 0 -chrVIII 67639 69583 HC_gene_4051_tx_2 1 - 67639 69583 . 2 1473,333 0,1612 -chrVIII 68058 68979 LC_gene_3822_tx_1 1 + 68058 68979 . 1 922 0 -chrVIII 69631 70047 LC_gene_4052_tx_1 1 - 69631 70047 . 1 417 0 -chrVIII 69693 71905 HC_gene_3823_tx_1 5 + 69693 71905 . 1 2213 0 -chrVIII 69693 72020 HC_gene_3823_tx_2 2 + 69693 72020 . 1 2328 0 -chrVIII 69693 72413 HC_gene_3823_tx_3 1 + 69693 72413 . 1 2721 0 -chrVIII 70253 71905 HC_gene_3823_tx_4 6 + 70253 71905 . 1 1653 0 -chrVIII 70253 71905 HC_gene_3823_tx_5 1 + 70253 71905 . 2 834,762 0,891 -chrVIII 70253 72020 HC_gene_3823_tx_6 7 + 70253 72020 . 1 1768 0 -chrVIII 71885 72210 HC_gene_4053_tx_1 1 - 71885 72210 . 1 326 0 -chrVIII 71948 72210 HC_gene_4053_tx_2 3 - 71948 72210 . 1 263 0 -chrVIII 74249 75045 HC_gene_4054_tx_1 1 - 74249 75045 . 1 797 0 -chrVIII 75382 75944 HC_gene_3824_tx_1 11 + 75382 75944 . 1 563 0 -chrVIII 75382 76031 HC_gene_3824_tx_2 3710 + 75382 76031 . 1 650 0 -chrVIII 75595 76031 HC_gene_3824_tx_3 612 + 75595 76031 . 1 437 0 -chrVIII 76041 77303 HC_gene_4055_tx_1 13 - 76041 77303 . 1 1263 0 -chrVIII 77316 78331 HC_gene_4056_tx_1 1 - 77316 78331 . 1 1016 0 -chrVIII 77316 78333 HC_gene_4056_tx_2 1 - 77316 78333 . 1 1018 0 -chrVIII 77316 78348 HC_gene_4056_tx_3 81 - 77316 78348 . 1 1033 0 -chrVIII 77316 78348 HC_gene_4056_tx_4 1 - 77316 78348 . 2 644,307 0,726 -chrVIII 77316 78348 HC_gene_4056_tx_5 1 - 77316 78348 . 2 71,413 0,620 -chrVIII 77316 78348 HC_gene_4056_tx_6 1 - 77316 78348 . 2 767,217 0,816 -chrVIII 78883 80982 HC_gene_4057_tx_1 4 - 78883 80982 . 1 2100 0 -chrVIII 78883 81706 HC_gene_4057_tx_2 1 - 78883 81706 . 1 2824 0 -chrVIII 79718 80725 HC_gene_3825_tx_1 1 + 79718 80725 . 1 1008 0 -chrVIII 79832 81088 HC_gene_4057_tx_3 1 - 79832 81088 . 1 1257 0 -chrVIII 80290 80982 HC_gene_4057_tx_4 1 - 80290 80982 . 1 693 0 -chrVIII 80436 80982 HC_gene_4057_tx_5 5 - 80436 80982 . 1 547 0 -chrVIII 80436 81088 HC_gene_4057_tx_6 4 - 80436 81088 . 1 653 0 -chrVIII 80436 81706 HC_gene_4057_tx_9 52 - 80436 81706 . 1 1271 0 -chrVIII 80520 80982 HC_gene_4057_tx_7 8 - 80520 80982 . 1 463 0 -chrVIII 80520 81088 HC_gene_4057_tx_8 7 - 80520 81088 . 1 569 0 -chrVIII 80520 81706 HC_gene_4057_tx_10 77 - 80520 81706 . 1 1187 0 -chrVIII 80520 81706 HC_gene_4057_tx_11 1 - 80520 81706 . 2 945,150 0,1037 -chrVIII 81126 81657 HC_gene_4057_tx_12 1 - 81126 81657 . 1 532 0 -chrVIII 81126 81706 HC_gene_4057_tx_13 2 - 81126 81706 . 1 581 0 -chrVIII 81740 82269 HC_gene_4058_tx_1 1 - 81740 82269 . 1 530 0 -chrVIII 81740 82477 HC_gene_4058_tx_2 2 - 81740 82477 . 1 738 0 -chrVIII 81881 82269 HC_gene_4058_tx_3 1 - 81881 82269 . 1 389 0 -chrVIII 81881 83775 HC_gene_4058_tx_4 1 - 81881 83775 . 1 1895 0 -chrVIII 83652 85170 HC_gene_4059_tx_1 1 - 83652 85170 . 1 1519 0 -chrVIII 83713 85170 HC_gene_4059_tx_2 2 - 83713 85170 . 1 1458 0 -chrVIII 83773 85150 HC_gene_4059_tx_3 1 - 83773 85150 . 1 1378 0 -chrVIII 83773 85179 HC_gene_4059_tx_4 1 - 83773 85179 . 1 1407 0 -chrVIII 83862 85170 HC_gene_4059_tx_5 12 - 83862 85170 . 1 1309 0 -chrVIII 88144 91795 LC_gene_3826_tx_1 1 + 88144 91795 . 1 3652 0 -chrVIII 91189 92246 LC_gene_4060_tx_1 1 - 91189 92246 . 1 1058 0 -chrVIII 92250 92568 MC_gene_3827_tx_1 1 + 92250 92568 . 1 319 0 -chrVIII 92424 93097 HC_gene_4061_tx_1 7 - 92424 93097 . 1 674 0 -chrVIII 92424 93257 HC_gene_4061_tx_2 6 - 92424 93257 . 1 834 0 -chrVIII 92424 94679 HC_gene_4061_tx_3 5 - 92424 94679 . 1 2256 0 -chrVIII 92424 94679 HC_gene_4061_tx_4 1 - 92424 94679 . 2 447,1346 0,910 -chrVIII 92424 94679 HC_gene_4061_tx_5 1 - 92424 94679 . 2 1665,466 0,1790 -chrVIII 92424 94679 HC_gene_4061_tx_6 1 - 92424 94679 . 2 1999,172 0,2084 -chrVIII 94988 97334 HC_gene_4062_tx_1 2 - 94988 97334 . 1 2347 0 -chrVIII 94988 98038 HC_gene_4062_tx_2 17 - 94988 98038 . 1 3051 0 -chrVIII 95006 96997 MC_gene_3828_tx_1 1 + 95006 96997 . 1 1992 0 -chrVIII 97936 98873 HC_gene_4063_tx_1 1 - 97936 98873 . 1 938 0 -chrVIII 97941 98873 HC_gene_4063_tx_2 2 - 97941 98873 . 1 933 0 -chrVIII 97944 98436 HC_gene_4063_tx_10 1 - 97944 98436 . 1 493 0 -chrVIII 97955 98436 HC_gene_4063_tx_11 1 - 97955 98436 . 1 482 0 -chrVIII 97961 98436 HC_gene_4063_tx_12 2 - 97961 98436 . 1 476 0 -chrVIII 97962 98873 HC_gene_4063_tx_3 1 - 97962 98873 . 1 912 0 -chrVIII 97970 98873 HC_gene_4063_tx_4 1 - 97970 98873 . 1 904 0 -chrVIII 97983 98873 HC_gene_4063_tx_5 1 - 97983 98873 . 1 891 0 -chrVIII 97991 98873 HC_gene_4063_tx_6 1 - 97991 98873 . 1 883 0 -chrVIII 98000 98873 HC_gene_4063_tx_7 1 - 98000 98873 . 1 874 0 -chrVIII 98001 98873 HC_gene_4063_tx_8 1 - 98001 98873 . 1 873 0 -chrVIII 98005 98873 HC_gene_4063_tx_9 1 - 98005 98873 . 1 869 0 -chrVIII 98011 98436 HC_gene_4063_tx_13 1 - 98011 98436 . 1 426 0 -chrVIII 98038 98424 HC_gene_4063_tx_14 1 - 98038 98424 . 1 387 0 -chrVIII 98431 98947 HC_gene_3829_tx_1 9 + 98431 98947 . 1 517 0 -chrVIII 99138 100501 HC_gene_3830_tx_1 58 + 99138 100501 . 1 1364 0 -chrVIII 100391 100715 HC_gene_4064_tx_1 8 - 100391 100715 . 1 325 0 -chrVIII 100391 101595 HC_gene_4064_tx_2 6 - 100391 101595 . 1 1205 0 -chrVIII 100391 101974 HC_gene_4064_tx_3 56 - 100391 101974 . 1 1584 0 -chrVIII 100391 102371 HC_gene_4064_tx_5 2 - 100391 102371 . 1 1981 0 -chrVIII 100493 100715 HC_gene_4064_tx_6 2 - 100493 100715 . 1 223 0 -chrVIII 100493 101974 HC_gene_4064_tx_4 18 - 100493 101974 . 1 1482 0 -chrVIII 101222 101974 HC_gene_4064_tx_7 2 - 101222 101974 . 1 753 0 -chrVIII 102252 102554 HC_gene_3831_tx_1 104 + 102252 102554 . 1 303 0 -chrVIII 102488 103598 LC_gene_4065_tx_1 1 - 102488 103598 . 1 1111 0 -chrVIII 102592 103523 HC_gene_3832_tx_1 1 + 102592 103523 . 1 932 0 -chrVIII 102592 103543 HC_gene_3832_tx_2 1 + 102592 103543 . 1 952 0 -chrVIII 102592 103551 HC_gene_3832_tx_3 1 + 102592 103551 . 1 960 0 -chrVIII 102592 104031 HC_gene_3832_tx_4 40 + 102592 104031 . 1 1440 0 -chrVIII 102592 104031 HC_gene_3832_tx_5 1 + 102592 104031 . 2 866,522 0,918 -chrVIII 103003 104031 HC_gene_3832_tx_6 11 + 103003 104031 . 1 1029 0 -chrVIII 103333 104031 HC_gene_3832_tx_7 12 + 103333 104031 . 1 699 0 -chrVIII 104248 105220 HC_gene_3833_tx_1 1 + 104248 105220 . 2 169,422 0,551 -chrVIII 104248 105220 HC_gene_3833_tx_2 1451 + 104248 105220 . 2 158,417 0,556 -chrVIII 104248 105220 HC_gene_3833_tx_3 1 + 104248 105220 . 3 42,111,247 0,551,726 -chrVIII 104248 105220 HC_gene_3833_tx_4 61 + 104248 105220 . 1 973 0 -chrVIII 104248 105220 HC_gene_3833_tx_5 1 + 104248 105220 . 2 145,417 0,556 -chrVIII 104248 105220 HC_gene_3833_tx_6 1 + 104248 105220 . 2 158,367 0,606 -chrVIII 104248 105220 HC_gene_3833_tx_7 1 + 104248 105220 . 3 158,149,171 0,556,802 -chrVIII 104248 105220 HC_gene_3833_tx_8 1 + 104248 105220 . 2 169,349 0,624 -chrVIII 104248 105220 HC_gene_3833_tx_9 1 + 104248 105220 . 2 89,417 0,556 -chrVIII 104248 105220 HC_gene_3833_tx_10 3 + 104248 105220 . 2 169,383 0,590 -chrVIII 104248 105220 HC_gene_3833_tx_11 1 + 104248 105220 . 2 204,267 0,706 -chrVIII 104248 105220 HC_gene_3833_tx_12 1 + 104248 105220 . 2 117,316 0,657 -chrVIII 104248 105220 HC_gene_3833_tx_13 1 + 104248 105220 . 2 71,323 0,650 -chrVIII 104248 105220 HC_gene_3833_tx_14 1 + 104248 105220 . 2 146,417 0,556 -chrVIII 104248 105220 HC_gene_3833_tx_15 1 + 104248 105220 . 2 126,329 0,644 -chrVIII 104248 105220 HC_gene_3833_tx_16 1 + 104248 105220 . 2 129,422 0,551 -chrVIII 104248 105220 HC_gene_3833_tx_17 1 + 104248 105220 . 2 141,417 0,556 -chrVIII 104248 105220 HC_gene_3833_tx_18 1 + 104248 105220 . 2 126,383 0,590 -chrVIII 104248 105220 HC_gene_3833_tx_19 1 + 104248 105220 . 2 143,417 0,556 -chrVIII 104248 105220 HC_gene_3833_tx_20 1 + 104248 105220 . 2 129,438 0,535 -chrVIII 104248 105220 HC_gene_3833_tx_21 1 + 104248 105220 . 2 122,401 0,572 -chrVIII 104248 105220 HC_gene_3833_tx_22 1 + 104248 105220 . 3 158,149,203 0,556,770 -chrVIII 104248 105220 HC_gene_3833_tx_23 1 + 104248 105220 . 2 190,329 0,644 -chrVIII 104900 105220 HC_gene_3833_tx_24 172 + 104900 105220 . 1 321 0 -chrVIII 105145 105438 HC_gene_4066_tx_1 12 - 105145 105438 . 1 294 0 -chrVIII 105825 107463 HC_gene_3834_tx_1 2 + 105825 107463 . 1 1639 0 -chrVIII 106031 107463 HC_gene_3834_tx_2 39 + 106031 107463 . 1 1433 0 -chrVIII 106641 107463 HC_gene_3834_tx_3 9 + 106641 107463 . 1 823 0 -chrVIII 106824 107463 HC_gene_3834_tx_4 9 + 106824 107463 . 1 640 0 -chrVIII 106939 107463 HC_gene_3834_tx_5 5 + 106939 107463 . 1 525 0 -chrVIII 107017 107463 HC_gene_3834_tx_6 3 + 107017 107463 . 1 447 0 -chrVIII 107759 108329 HC_gene_3835_tx_1 154 + 107759 108329 . 2 73,435 0,136 -chrVIII 107759 108329 HC_gene_3835_tx_2 2 + 107759 108329 . 2 73,418 0,153 -chrVIII 107759 108329 HC_gene_3835_tx_3 4 + 107759 108329 . 2 70,430 0,141 -chrVIII 107759 108329 HC_gene_3835_tx_4 36 + 107759 108329 . 1 571 0 -chrVIII 107759 108329 HC_gene_3835_tx_5 4 + 107759 108329 . 2 58,430 0,141 -chrVIII 107759 108329 HC_gene_3835_tx_6 1 + 107759 108329 . 2 51,401 0,170 -chrVIII 107759 108329 HC_gene_3835_tx_7 1 + 107759 108329 . 2 51,432 0,139 -chrVIII 107759 108329 HC_gene_3835_tx_8 1 + 107759 108329 . 2 58,432 0,139 -chrVIII 107759 108329 HC_gene_3835_tx_9 1 + 107759 108329 . 2 58,437 0,134 -chrVIII 107759 108329 HC_gene_3835_tx_10 2 + 107759 108329 . 2 82,401 0,170 -chrVIII 107759 108329 HC_gene_3835_tx_11 1 + 107759 108329 . 2 58,452 0,119 -chrVIII 107759 108329 HC_gene_3835_tx_12 1 + 107759 108329 . 2 77,435 0,136 -chrVIII 107759 108522 HC_gene_3835_tx_13 1 + 107759 108522 . 2 73,628 0,136 -chrVIII 107759 108522 HC_gene_3835_tx_14 1 + 107759 108522 . 1 764 0 -chrVIII 107842 108463 MC_gene_4067_tx_1 1 - 107842 108463 . 1 622 0 -chrVIII 107989 108329 HC_gene_3835_tx_15 34 + 107989 108329 . 1 341 0 -chrVIII 108686 109760 HC_gene_3836_tx_1 3 + 108686 109760 . 1 1075 0 -chrVIII 108686 109760 HC_gene_3836_tx_2 1 + 108686 109760 . 2 454,458 0,617 -chrVIII 108686 110017 HC_gene_3836_tx_3 17 + 108686 110017 . 1 1332 0 -chrVIII 109282 110017 HC_gene_3836_tx_4 8 + 109282 110017 . 1 736 0 -chrVIII 109940 110281 HC_gene_4068_tx_1 10 - 109940 110281 . 1 342 0 -chrVIII 109940 111324 HC_gene_4068_tx_2 32 - 109940 111324 . 1 1385 0 -chrVIII 109940 111324 HC_gene_4068_tx_3 1 - 109940 111324 . 2 594,743 0,642 -chrVIII 110095 111613 LC_gene_3837_tx_1 1 + 110095 111613 . 1 1519 0 -chrVIII 111502 113176 HC_gene_4069_tx_1 27 - 111502 113176 . 1 1675 0 -chrVIII 111577 113506 MC_gene_3838_tx_1 1 + 111577 113506 . 1 1930 0 -chrVIII 113397 115013 HC_gene_4070_tx_1 131 - 113397 115013 . 1 1617 0 -chrVIII 113397 115013 HC_gene_4070_tx_2 1 - 113397 115013 . 2 622,940 0,677 -chrVIII 113397 115013 HC_gene_4070_tx_3 1 - 113397 115013 . 2 673,856 0,761 -chrVIII 113397 115013 HC_gene_4070_tx_4 1 - 113397 115013 . 2 503,1057 0,560 -chrVIII 113397 115013 HC_gene_4070_tx_5 1 - 113397 115013 . 2 673,838 0,779 -chrVIII 113397 115013 HC_gene_4070_tx_6 1 - 113397 115013 . 2 363,1170 0,447 -chrVIII 113397 115013 HC_gene_4070_tx_7 1 - 113397 115013 . 2 979,323 0,1294 -chrVIII 113397 115013 HC_gene_4070_tx_8 1 - 113397 115013 . 2 702,797 0,820 -chrVIII 115478 115748 HC_gene_4071_tx_1 81 - 115478 115748 . 1 271 0 -chrVIII 115478 115936 HC_gene_4071_tx_2 708 - 115478 115936 . 1 459 0 -chrVIII 115538 115821 MC_gene_3839_tx_1 1 + 115538 115821 . 1 284 0 -chrVIII 116461 116978 HC_gene_4072_tx_1 9 - 116461 116978 . 1 518 0 -chrVIII 116715 117437 LC_gene_3840_tx_1 1 + 116715 117437 . 1 723 0 -chrVIII 117362 118217 LC_gene_4073_tx_1 1 - 117362 118217 . 1 856 0 -chrVIII 117790 119568 HC_gene_3841_tx_1 28 + 117790 119568 . 1 1779 0 -chrVIII 117790 119568 HC_gene_3841_tx_2 1 + 117790 119568 . 2 273,1215 0,564 -chrVIII 117790 119568 HC_gene_3841_tx_3 1 + 117790 119568 . 2 200,1448 0,331 -chrVIII 118713 119568 HC_gene_3841_tx_4 7 + 118713 119568 . 1 856 0 -chrVIII 119807 120192 HC_gene_4074_tx_1 49 - 119807 120192 . 1 386 0 -chrVIII 119807 120320 HC_gene_4074_tx_2 42 - 119807 120320 . 1 514 0 -chrVIII 119807 120478 HC_gene_4074_tx_3 69 - 119807 120478 . 1 672 0 -chrVIII 119807 120478 HC_gene_4074_tx_4 1 - 119807 120478 . 2 446,152 0,520 -chrVIII 119807 120741 HC_gene_4074_tx_5 31 - 119807 120741 . 1 935 0 -chrVIII 119807 120980 HC_gene_4074_tx_6 22 - 119807 120980 . 1 1174 0 -chrVIII 119807 120980 HC_gene_4074_tx_7 1 - 119807 120980 . 2 68,1044 0,130 -chrVIII 119807 121098 HC_gene_4074_tx_8 22 - 119807 121098 . 1 1292 0 -chrVIII 119807 121215 HC_gene_4074_tx_9 16 - 119807 121215 . 1 1409 0 -chrVIII 119807 121274 HC_gene_4074_tx_10 25 - 119807 121274 . 1 1468 0 -chrVIII 119807 121274 HC_gene_4074_tx_11 1 - 119807 121274 . 2 670,259 0,1209 -chrVIII 119807 121274 HC_gene_4074_tx_12 1 - 119807 121274 . 2 782,489 0,979 -chrVIII 119807 121722 HC_gene_4074_tx_13 56 - 119807 121722 . 1 1916 0 -chrVIII 119807 121829 HC_gene_4074_tx_14 168 - 119807 121829 . 1 2023 0 -chrVIII 119807 121829 HC_gene_4074_tx_15 1 - 119807 121829 . 2 1468,167 0,1856 -chrVIII 119807 121829 HC_gene_4074_tx_16 1 - 119807 121829 . 2 1716,135 0,1888 -chrVIII 119807 121829 HC_gene_4074_tx_17 1 - 119807 121829 . 2 1002,234 0,1789 -chrVIII 119807 121829 HC_gene_4074_tx_18 1 - 119807 121829 . 2 522,1322 0,701 -chrVIII 119807 121829 HC_gene_4074_tx_19 1 - 119807 121829 . 2 1004,408 0,1615 -chrVIII 119807 121829 HC_gene_4074_tx_20 1 - 119807 121829 . 2 719,1197 0,826 -chrVIII 119807 121829 HC_gene_4074_tx_21 1 - 119807 121829 . 2 175,1576 0,447 -chrVIII 119807 121833 HC_gene_4074_tx_22 1 - 119807 121833 . 2 854,1105 0,922 -chrVIII 121895 123484 HC_gene_4075_tx_1 2 - 121895 123484 . 1 1590 0 -chrVIII 121895 123633 HC_gene_4075_tx_2 5 - 121895 123633 . 1 1739 0 -chrVIII 122630 123116 MC_gene_3842_tx_1 1 + 122630 123116 . 1 487 0 -chrVIII 122658 123003 HC_gene_4075_tx_3 9 - 122658 123003 . 1 346 0 -chrVIII 122658 123113 HC_gene_4075_tx_4 23 - 122658 123113 . 1 456 0 -chrVIII 122658 123227 HC_gene_4075_tx_5 15 - 122658 123227 . 1 570 0 -chrVIII 122658 123484 HC_gene_4075_tx_6 24 - 122658 123484 . 1 827 0 -chrVIII 122658 123633 HC_gene_4075_tx_7 146 - 122658 123633 . 1 976 0 -chrVIII 122915 123200 MC_gene_3843_tx_1 1 + 122915 123200 . 1 286 0 -chrVIII 123883 124181 MC_gene_3844_tx_1 1 + 123883 124181 . 1 299 0 -chrVIII 124010 124425 HC_gene_4076_tx_1 15 - 124010 124425 . 1 416 0 -chrVIII 124010 124838 HC_gene_4076_tx_2 18 - 124010 124838 . 1 829 0 -chrVIII 124010 124945 HC_gene_4076_tx_3 11 - 124010 124945 . 1 936 0 -chrVIII 124010 125247 HC_gene_4076_tx_4 10 - 124010 125247 . 1 1238 0 -chrVIII 124010 125470 HC_gene_4076_tx_5 11 - 124010 125470 . 1 1461 0 -chrVIII 124010 125470 HC_gene_4076_tx_6 1 - 124010 125470 . 2 269,1073 0,388 -chrVIII 124010 125751 HC_gene_4076_tx_7 9 - 124010 125751 . 1 1742 0 -chrVIII 124010 125751 HC_gene_4076_tx_8 1 - 124010 125751 . 2 519,1167 0,575 -chrVIII 124010 125915 HC_gene_4076_tx_9 49 - 124010 125915 . 1 1906 0 -chrVIII 124010 125915 HC_gene_4076_tx_10 1 - 124010 125915 . 2 348,1518 0,388 -chrVIII 124010 125915 HC_gene_4076_tx_11 1 - 124010 125915 . 2 715,1142 0,764 -chrVIII 124010 125915 HC_gene_4076_tx_12 1 - 124010 125915 . 2 474,701 0,1205 -chrVIII 124010 125915 HC_gene_4076_tx_13 1 - 124010 125915 . 2 811,970 0,936 -chrVIII 126488 127657 HC_gene_3845_tx_1 1233 + 126488 127657 . 2 64,545 0,625 -chrVIII 126488 127657 HC_gene_3845_tx_2 56 + 126488 127657 . 1 1170 0 -chrVIII 126488 127657 HC_gene_3845_tx_3 12 + 126488 127657 . 2 68,545 0,625 -chrVIII 127129 127657 HC_gene_3845_tx_4 896 + 127129 127657 . 1 529 0 -chrVIII 127704 129286 LC_gene_4077_tx_1 1 - 127704 129286 . 1 1583 0 -chrVIII 127763 129213 HC_gene_3846_tx_1 4 + 127763 129213 . 1 1451 0 -chrVIII 129267 130776 HC_gene_3847_tx_1 1 + 129267 130776 . 1 1510 0 -chrVIII 129267 130776 HC_gene_3847_tx_2 1 + 129267 130776 . 2 260,1122 0,388 -chrVIII 129267 130776 HC_gene_3847_tx_3 1 + 129267 130776 . 2 262,1129 0,381 -chrVIII 129459 130427 HC_gene_3847_tx_4 1 + 129459 130427 . 2 70,780 0,189 -chrVIII 129459 130594 HC_gene_3847_tx_5 2 + 129459 130594 . 2 70,947 0,189 -chrVIII 129459 130594 HC_gene_3847_tx_6 1 + 129459 130594 . 1 1136 0 -chrVIII 129459 130597 HC_gene_3847_tx_7 2 + 129459 130597 . 2 70,950 0,189 -chrVIII 129459 130600 HC_gene_3847_tx_8 1 + 129459 130600 . 2 70,953 0,189 -chrVIII 129459 130603 HC_gene_3847_tx_9 4 + 129459 130603 . 2 70,956 0,189 -chrVIII 129459 130603 HC_gene_3847_tx_10 1 + 129459 130603 . 2 56,957 0,188 -chrVIII 129459 130603 HC_gene_3847_tx_11 1 + 129459 130603 . 1 1145 0 -chrVIII 129459 130613 HC_gene_3847_tx_12 1 + 129459 130613 . 2 70,966 0,189 -chrVIII 129459 130618 HC_gene_3847_tx_13 1 + 129459 130618 . 2 70,971 0,189 -chrVIII 129459 130621 HC_gene_3847_tx_14 1 + 129459 130621 . 1 1163 0 -chrVIII 129459 130621 HC_gene_3847_tx_15 1 + 129459 130621 . 2 70,974 0,189 -chrVIII 129459 130624 HC_gene_3847_tx_16 1 + 129459 130624 . 2 70,977 0,189 -chrVIII 129459 130776 HC_gene_3847_tx_17 30 + 129459 130776 . 2 70,1129 0,189 -chrVIII 129459 130776 HC_gene_3847_tx_18 1 + 129459 130776 . 2 68,1122 0,196 -chrVIII 129459 130776 HC_gene_3847_tx_19 1 + 129459 130776 . 2 74,1129 0,189 -chrVIII 129459 130776 HC_gene_3847_tx_20 1 + 129459 130776 . 2 48,665 0,653 -chrVIII 129705 130600 HC_gene_3847_tx_21 1 + 129705 130600 . 1 896 0 -chrVIII 129705 130621 HC_gene_3847_tx_22 1 + 129705 130621 . 1 917 0 -chrVIII 129705 130776 HC_gene_3847_tx_23 9 + 129705 130776 . 1 1072 0 -chrVIII 129787 130776 HC_gene_3847_tx_24 4 + 129787 130776 . 1 990 0 -chrVIII 130492 131320 HC_gene_4078_tx_1 4 - 130492 131320 . 1 829 0 -chrVIII 130492 131474 HC_gene_4078_tx_2 14 - 130492 131474 . 1 983 0 -chrVIII 130679 131181 HC_gene_4078_tx_5 25 - 130679 131181 . 1 503 0 -chrVIII 130679 131320 HC_gene_4078_tx_3 14 - 130679 131320 . 1 642 0 -chrVIII 130679 131474 HC_gene_4078_tx_4 161 - 130679 131474 . 1 796 0 -chrVIII 131579 132930 HC_gene_4079_tx_1 1 - 131579 132930 . 1 1352 0 -chrVIII 131737 132980 LC_gene_3848_tx_1 1 + 131737 132980 . 1 1244 0 -chrVIII 133393 134189 LC_gene_4080_tx_1 1 - 133393 134189 . 1 797 0 -chrVIII 133595 133997 MC_gene_3849_tx_1 1 + 133595 133997 . 1 403 0 -chrVIII 135187 136821 HC_gene_3850_tx_1 1 + 135187 136821 . 2 919,645 0,990 -chrVIII 136658 137602 HC_gene_4081_tx_1 4 - 136658 137602 . 1 945 0 -chrVIII 136658 138491 HC_gene_4081_tx_4 6 - 136658 138491 . 2 1583,83 0,1751 -chrVIII 136658 138491 HC_gene_4081_tx_5 1 - 136658 138491 . 2 1579,83 0,1751 -chrVIII 136742 137602 HC_gene_4081_tx_2 6 - 136742 137602 . 1 861 0 -chrVIII 136742 138491 HC_gene_4081_tx_6 12 - 136742 138491 . 2 1499,83 0,1667 -chrVIII 136742 138491 HC_gene_4081_tx_7 1 - 136742 138491 . 2 1515,83 0,1667 -chrVIII 136742 138491 HC_gene_4081_tx_8 1 - 136742 138491 . 1 1750 0 -chrVIII 136742 138491 HC_gene_4081_tx_9 1 - 136742 138491 . 2 1495,83 0,1667 -chrVIII 136796 137602 HC_gene_4081_tx_3 5 - 136796 137602 . 1 807 0 -chrVIII 136796 138491 HC_gene_4081_tx_10 3 - 136796 138491 . 2 1445,83 0,1613 -chrVIII 138671 139947 HC_gene_3851_tx_1 22 + 138671 139947 . 1 1277 0 -chrVIII 138671 139947 HC_gene_3851_tx_2 1 + 138671 139947 . 2 659,520 0,757 -chrVIII 138671 140014 HC_gene_3851_tx_3 4 + 138671 140014 . 1 1344 0 -chrVIII 138864 139947 HC_gene_3851_tx_4 3 + 138864 139947 . 1 1084 0 -chrVIII 138953 139947 HC_gene_3851_tx_5 4 + 138953 139947 . 1 995 0 -chrVIII 139376 141458 HC_gene_4082_tx_1 5 - 139376 141458 . 1 2083 0 -chrVIII 139531 141458 HC_gene_4082_tx_2 1 - 139531 141458 . 1 1928 0 -chrVIII 139840 140741 HC_gene_4082_tx_12 37 - 139840 140741 . 1 902 0 -chrVIII 139840 141458 HC_gene_4082_tx_3 237 - 139840 141458 . 1 1619 0 -chrVIII 139840 141458 HC_gene_4082_tx_4 1 - 139840 141458 . 2 886,660 0,959 -chrVIII 139840 141458 HC_gene_4082_tx_5 1 - 139840 141458 . 2 668,507 0,1112 -chrVIII 139840 141458 HC_gene_4082_tx_6 1 - 139840 141458 . 2 66,1487 0,132 -chrVIII 139840 141458 HC_gene_4082_tx_7 1 - 139840 141458 . 2 570,488 0,1131 -chrVIII 139840 141458 HC_gene_4082_tx_8 1 - 139840 141458 . 2 723,518 0,1101 -chrVIII 139840 141458 HC_gene_4082_tx_9 1 - 139840 141458 . 2 81,1482 0,137 -chrVIII 139840 141458 HC_gene_4082_tx_10 1 - 139840 141458 . 2 870,199 0,1420 -chrVIII 139840 141458 HC_gene_4082_tx_11 1 - 139840 141458 . 2 122,1426 0,193 -chrVIII 140567 141458 HC_gene_4082_tx_13 1 - 140567 141458 . 1 892 0 -chrVIII 141751 142306 LC_gene_3852_tx_1 1 + 141751 142306 . 1 556 0 -chrVIII 141809 142312 HC_gene_4083_tx_1 60 - 141809 142312 . 1 504 0 -chrVIII 141809 142609 HC_gene_4083_tx_2 29 - 141809 142609 . 1 801 0 -chrVIII 141809 142670 HC_gene_4083_tx_3 82 - 141809 142670 . 1 862 0 -chrVIII 141809 142828 HC_gene_4083_tx_4 63 - 141809 142828 . 1 1020 0 -chrVIII 141809 142978 HC_gene_4083_tx_5 25 - 141809 142978 . 1 1170 0 -chrVIII 141809 143521 HC_gene_4083_tx_6 19 - 141809 143521 . 1 1713 0 -chrVIII 141809 143521 HC_gene_4083_tx_7 1 - 141809 143521 . 2 610,1061 0,652 -chrVIII 141809 143592 HC_gene_4083_tx_8 320 - 141809 143592 . 1 1784 0 -chrVIII 141809 143592 HC_gene_4083_tx_9 1 - 141809 143592 . 2 314,1392 0,392 -chrVIII 141809 143592 HC_gene_4083_tx_10 1 - 141809 143592 . 3 356,228,377 0,560,1407 -chrVIII 141809 143592 HC_gene_4083_tx_11 1 - 141809 143592 . 2 920,212 0,1572 -chrVIII 141809 143592 HC_gene_4083_tx_12 1 - 141809 143592 . 2 1498,198 0,1586 -chrVIII 141809 143592 HC_gene_4083_tx_13 1 - 141809 143592 . 2 299,1044 0,740 -chrVIII 141809 143592 HC_gene_4083_tx_14 1 - 141809 143592 . 2 691,1007 0,777 -chrVIII 141809 143592 HC_gene_4083_tx_15 1 - 141809 143592 . 2 681,1016 0,768 -chrVIII 141809 143592 HC_gene_4083_tx_16 1 - 141809 143592 . 2 615,1096 0,688 -chrVIII 141809 143592 HC_gene_4083_tx_17 1 - 141809 143592 . 2 822,868 0,916 -chrVIII 141809 143592 HC_gene_4083_tx_18 1 - 141809 143592 . 2 681,1043 0,741 -chrVIII 143864 146434 LC_gene_4084_tx_1 1 - 143864 146434 . 1 2571 0 -chrVIII 143876 146152 HC_gene_3853_tx_1 187 + 143876 146152 . 1 2277 0 -chrVIII 143876 146152 HC_gene_3853_tx_2 1 + 143876 146152 . 2 888,1308 0,969 -chrVIII 143876 146152 HC_gene_3853_tx_3 1 + 143876 146152 . 2 1378,811 0,1466 -chrVIII 143876 146152 HC_gene_3853_tx_4 1 + 143876 146152 . 2 1292,903 0,1374 -chrVIII 143876 146152 HC_gene_3853_tx_5 1 + 143876 146152 . 2 104,1707 0,570 -chrVIII 143876 146152 HC_gene_3853_tx_6 1 + 143876 146152 . 2 961,1257 0,1020 -chrVIII 143876 146152 HC_gene_3853_tx_7 1 + 143876 146152 . 2 570,1377 0,900 -chrVIII 143876 146152 HC_gene_3853_tx_8 1 + 143876 146152 . 2 1288,896 0,1381 -chrVIII 143876 146152 HC_gene_3853_tx_9 1 + 143876 146152 . 2 1396,811 0,1466 -chrVIII 143876 146152 HC_gene_3853_tx_10 1 + 143876 146152 . 2 1254,953 0,1324 -chrVIII 144263 146152 HC_gene_3853_tx_11 19 + 144263 146152 . 1 1890 0 -chrVIII 144612 146152 HC_gene_3853_tx_12 16 + 144612 146152 . 1 1541 0 -chrVIII 144612 146152 HC_gene_3853_tx_13 1 + 144612 146152 . 2 432,979 0,562 -chrVIII 145385 146152 HC_gene_3853_tx_14 45 + 145385 146152 . 1 768 0 -chrVIII 145525 146152 HC_gene_3853_tx_15 78 + 145525 146152 . 1 628 0 -chrVIII 145697 146152 HC_gene_3853_tx_16 39 + 145697 146152 . 1 456 0 -chrVIII 146383 146873 MC_gene_4085_tx_1 1 - 146383 146873 . 1 491 0 -chrVIII 146383 147054 MC_gene_4085_tx_2 1 - 146383 147054 . 1 672 0 -chrVIII 146675 147172 HC_gene_3854_tx_1 4 + 146675 147172 . 1 498 0 -chrVIII 146675 147747 HC_gene_3854_tx_2 2 + 146675 147747 . 1 1073 0 -chrVIII 147671 148711 HC_gene_4086_tx_1 1 - 147671 148711 . 1 1041 0 -chrVIII 147686 148123 HC_gene_4086_tx_128 2 - 147686 148123 . 1 438 0 -chrVIII 147686 148711 HC_gene_4086_tx_2 1 - 147686 148711 . 2 431,45 0,981 -chrVIII 147701 148711 HC_gene_4086_tx_3 1 - 147701 148711 . 2 416,45 0,966 -chrVIII 147743 148123 HC_gene_4086_tx_129 2 - 147743 148123 . 1 381 0 -chrVIII 147744 148711 HC_gene_4086_tx_4 1 - 147744 148711 . 2 373,45 0,923 -chrVIII 147756 148711 HC_gene_4086_tx_5 1 - 147756 148711 . 2 361,45 0,911 -chrVIII 147758 148123 HC_gene_4086_tx_130 2 - 147758 148123 . 1 366 0 -chrVIII 147758 148711 HC_gene_4086_tx_6 2 - 147758 148711 . 2 359,45 0,909 -chrVIII 147765 148711 HC_gene_4086_tx_7 1 - 147765 148711 . 2 352,45 0,902 -chrVIII 147767 148123 HC_gene_4086_tx_131 2 - 147767 148123 . 1 357 0 -chrVIII 147769 148123 HC_gene_4086_tx_132 50 - 147769 148123 . 1 355 0 -chrVIII 147769 148711 HC_gene_4086_tx_8 6 - 147769 148711 . 2 348,45 0,898 -chrVIII 147769 148711 HC_gene_4086_tx_9 1 - 147769 148711 . 1 943 0 -chrVIII 147769 148711 HC_gene_4086_tx_10 1 - 147769 148711 . 2 341,49 0,894 -chrVIII 147770 148123 HC_gene_4086_tx_133 2 - 147770 148123 . 1 354 0 -chrVIII 147774 148123 HC_gene_4086_tx_134 112 - 147774 148123 . 1 350 0 -chrVIII 147774 148711 HC_gene_4086_tx_11 7 - 147774 148711 . 1 938 0 -chrVIII 147774 148711 HC_gene_4086_tx_12 6 - 147774 148711 . 2 336,49 0,889 -chrVIII 147774 148711 HC_gene_4086_tx_13 31 - 147774 148711 . 2 343,45 0,893 -chrVIII 147775 148123 HC_gene_4086_tx_135 34 - 147775 148123 . 1 349 0 -chrVIII 147775 148711 HC_gene_4086_tx_14 1 - 147775 148711 . 1 937 0 -chrVIII 147775 148711 HC_gene_4086_tx_15 10 - 147775 148711 . 2 342,45 0,892 -chrVIII 147775 148711 HC_gene_4086_tx_16 1 - 147775 148711 . 2 335,45 0,892 -chrVIII 147775 148711 HC_gene_4086_tx_17 1 - 147775 148711 . 2 335,49 0,888 -chrVIII 147776 148123 HC_gene_4086_tx_136 260 - 147776 148123 . 1 348 0 -chrVIII 147776 148711 HC_gene_4086_tx_18 1 - 147776 148711 . 1 936 0 -chrVIII 147776 148711 HC_gene_4086_tx_19 3 - 147776 148711 . 2 334,49 0,887 -chrVIII 147776 148711 HC_gene_4086_tx_20 69 - 147776 148711 . 2 341,45 0,891 -chrVIII 147776 148711 HC_gene_4086_tx_21 2 - 147776 148711 . 2 334,45 0,891 -chrVIII 147776 148711 HC_gene_4086_tx_22 1 - 147776 148711 . 2 341,49 0,887 -chrVIII 147778 148711 HC_gene_4086_tx_23 1 - 147778 148711 . 2 339,45 0,889 -chrVIII 147779 148123 HC_gene_4086_tx_137 39 - 147779 148123 . 1 345 0 -chrVIII 147779 148711 HC_gene_4086_tx_24 3 - 147779 148711 . 1 933 0 -chrVIII 147779 148711 HC_gene_4086_tx_25 1 - 147779 148711 . 2 372,45 0,888 -chrVIII 147779 148711 HC_gene_4086_tx_26 13 - 147779 148711 . 2 338,45 0,888 -chrVIII 147779 148711 HC_gene_4086_tx_27 1 - 147779 148711 . 2 331,45 0,888 -chrVIII 147780 148123 HC_gene_4086_tx_138 21 - 147780 148123 . 1 344 0 -chrVIII 147780 148711 HC_gene_4086_tx_28 2 - 147780 148711 . 1 932 0 -chrVIII 147780 148711 HC_gene_4086_tx_29 10 - 147780 148711 . 2 337,45 0,887 -chrVIII 147781 148123 HC_gene_4086_tx_139 259 - 147781 148123 . 1 343 0 -chrVIII 147781 148711 HC_gene_4086_tx_30 13 - 147781 148711 . 1 931 0 -chrVIII 147781 148711 HC_gene_4086_tx_31 9 - 147781 148711 . 2 329,49 0,882 -chrVIII 147781 148711 HC_gene_4086_tx_32 65 - 147781 148711 . 2 336,45 0,886 -chrVIII 147782 148123 HC_gene_4086_tx_140 88 - 147782 148123 . 1 342 0 -chrVIII 147782 148711 HC_gene_4086_tx_33 4 - 147782 148711 . 1 930 0 -chrVIII 147782 148711 HC_gene_4086_tx_34 5 - 147782 148711 . 2 328,49 0,881 -chrVIII 147782 148711 HC_gene_4086_tx_35 24 - 147782 148711 . 2 335,45 0,885 -chrVIII 147782 148711 HC_gene_4086_tx_36 1 - 147782 148711 . 2 335,49 0,881 -chrVIII 147783 148123 HC_gene_4086_tx_141 13 - 147783 148123 . 1 341 0 -chrVIII 147783 148711 HC_gene_4086_tx_37 2 - 147783 148711 . 1 929 0 -chrVIII 147783 148711 HC_gene_4086_tx_38 2 - 147783 148711 . 2 334,45 0,884 -chrVIII 147783 148711 HC_gene_4086_tx_39 1 - 147783 148711 . 2 327,49 0,880 -chrVIII 147784 148123 HC_gene_4086_tx_142 57 - 147784 148123 . 1 340 0 -chrVIII 147784 148711 HC_gene_4086_tx_40 3 - 147784 148711 . 1 928 0 -chrVIII 147784 148711 HC_gene_4086_tx_41 2 - 147784 148711 . 2 326,49 0,879 -chrVIII 147784 148711 HC_gene_4086_tx_42 11 - 147784 148711 . 2 333,45 0,883 -chrVIII 147784 148711 HC_gene_4086_tx_43 1 - 147784 148711 . 2 326,45 0,883 -chrVIII 147784 148711 HC_gene_4086_tx_44 1 - 147784 148711 . 2 333,49 0,879 -chrVIII 147785 148123 HC_gene_4086_tx_143 53 - 147785 148123 . 1 339 0 -chrVIII 147785 148711 HC_gene_4086_tx_45 1 - 147785 148711 . 2 325,49 0,878 -chrVIII 147785 148711 HC_gene_4086_tx_46 2 - 147785 148711 . 1 927 0 -chrVIII 147785 148711 HC_gene_4086_tx_47 11 - 147785 148711 . 2 332,45 0,882 -chrVIII 147786 148123 HC_gene_4086_tx_144 94 - 147786 148123 . 1 338 0 -chrVIII 147786 148711 HC_gene_4086_tx_48 4 - 147786 148711 . 1 926 0 -chrVIII 147786 148711 HC_gene_4086_tx_49 26 - 147786 148711 . 2 331,45 0,881 -chrVIII 147786 148711 HC_gene_4086_tx_50 2 - 147786 148711 . 2 324,49 0,877 -chrVIII 147787 148123 HC_gene_4086_tx_145 63 - 147787 148123 . 1 337 0 -chrVIII 147787 148711 HC_gene_4086_tx_51 19 - 147787 148711 . 2 330,45 0,880 -chrVIII 147788 148123 HC_gene_4086_tx_146 52 - 147788 148123 . 1 336 0 -chrVIII 147788 148711 HC_gene_4086_tx_52 2 - 147788 148711 . 1 924 0 -chrVIII 147788 148711 HC_gene_4086_tx_53 19 - 147788 148711 . 2 329,45 0,879 -chrVIII 147788 148711 HC_gene_4086_tx_54 1 - 147788 148711 . 2 322,45 0,879 -chrVIII 147789 148123 HC_gene_4086_tx_147 165 - 147789 148123 . 1 335 0 -chrVIII 147789 148711 HC_gene_4086_tx_55 7 - 147789 148711 . 1 923 0 -chrVIII 147789 148711 HC_gene_4086_tx_56 44 - 147789 148711 . 2 328,45 0,878 -chrVIII 147789 148711 HC_gene_4086_tx_57 2 - 147789 148711 . 2 328,49 0,874 -chrVIII 147789 148711 HC_gene_4086_tx_58 3 - 147789 148711 . 2 321,49 0,874 -chrVIII 147789 148711 HC_gene_4086_tx_59 1 - 147789 148711 . 2 321,45 0,878 -chrVIII 147790 148123 HC_gene_4086_tx_148 94 - 147790 148123 . 1 334 0 -chrVIII 147790 148711 HC_gene_4086_tx_60 3 - 147790 148711 . 1 922 0 -chrVIII 147790 148711 HC_gene_4086_tx_61 4 - 147790 148711 . 2 320,49 0,873 -chrVIII 147790 148711 HC_gene_4086_tx_62 25 - 147790 148711 . 2 327,45 0,877 -chrVIII 147790 148711 HC_gene_4086_tx_63 1 - 147790 148711 . 2 327,49 0,873 -chrVIII 147791 148123 HC_gene_4086_tx_149 159 - 147791 148123 . 1 333 0 -chrVIII 147791 148711 HC_gene_4086_tx_64 7 - 147791 148711 . 1 921 0 -chrVIII 147791 148711 HC_gene_4086_tx_65 11 - 147791 148711 . 2 319,49 0,872 -chrVIII 147791 148711 HC_gene_4086_tx_66 37 - 147791 148711 . 2 326,45 0,876 -chrVIII 147791 148711 HC_gene_4086_tx_67 2 - 147791 148711 . 2 319,45 0,876 -chrVIII 147792 148123 HC_gene_4086_tx_150 35 - 147792 148123 . 1 332 0 -chrVIII 147792 148711 HC_gene_4086_tx_68 1 - 147792 148711 . 1 920 0 -chrVIII 147792 148711 HC_gene_4086_tx_69 8 - 147792 148711 . 2 325,45 0,875 -chrVIII 147793 148123 HC_gene_4086_tx_151 30 - 147793 148123 . 1 331 0 -chrVIII 147793 148711 HC_gene_4086_tx_70 4 - 147793 148711 . 1 919 0 -chrVIII 147793 148711 HC_gene_4086_tx_71 5 - 147793 148711 . 2 324,45 0,874 -chrVIII 147794 148123 HC_gene_4086_tx_152 46 - 147794 148123 . 1 330 0 -chrVIII 147794 148711 HC_gene_4086_tx_72 3 - 147794 148711 . 1 918 0 -chrVIII 147794 148711 HC_gene_4086_tx_73 14 - 147794 148711 . 2 323,45 0,873 -chrVIII 147794 148711 HC_gene_4086_tx_74 1 - 147794 148711 . 2 316,45 0,873 -chrVIII 147795 148123 HC_gene_4086_tx_153 56 - 147795 148123 . 1 329 0 -chrVIII 147795 148711 HC_gene_4086_tx_75 7 - 147795 148711 . 1 917 0 -chrVIII 147795 148711 HC_gene_4086_tx_76 3 - 147795 148711 . 2 315,49 0,868 -chrVIII 147795 148711 HC_gene_4086_tx_77 16 - 147795 148711 . 2 322,45 0,872 -chrVIII 147796 148123 HC_gene_4086_tx_154 10 - 147796 148123 . 1 328 0 -chrVIII 147797 148123 HC_gene_4086_tx_155 51 - 147797 148123 . 1 327 0 -chrVIII 147797 148711 HC_gene_4086_tx_78 3 - 147797 148711 . 1 915 0 -chrVIII 147797 148711 HC_gene_4086_tx_79 3 - 147797 148711 . 2 313,49 0,866 -chrVIII 147797 148711 HC_gene_4086_tx_80 12 - 147797 148711 . 2 320,45 0,870 -chrVIII 147797 148711 HC_gene_4086_tx_81 1 - 147797 148711 . 2 313,45 0,870 -chrVIII 147797 148711 HC_gene_4086_tx_82 1 - 147797 148711 . 3 38,223,45 0,97,870 -chrVIII 147798 148123 HC_gene_4086_tx_156 24 - 147798 148123 . 1 326 0 -chrVIII 147798 148711 HC_gene_4086_tx_83 1 - 147798 148711 . 2 312,45 0,869 -chrVIII 147798 148711 HC_gene_4086_tx_84 4 - 147798 148711 . 2 319,45 0,869 -chrVIII 147798 148711 HC_gene_4086_tx_85 1 - 147798 148711 . 2 312,49 0,865 -chrVIII 147799 148123 HC_gene_4086_tx_157 7 - 147799 148123 . 1 325 0 -chrVIII 147799 148711 HC_gene_4086_tx_86 2 - 147799 148711 . 1 913 0 -chrVIII 147800 148123 HC_gene_4086_tx_158 2 - 147800 148123 . 1 324 0 -chrVIII 147800 148711 HC_gene_4086_tx_87 1 - 147800 148711 . 1 912 0 -chrVIII 147800 148711 HC_gene_4086_tx_88 1 - 147800 148711 . 2 317,45 0,867 -chrVIII 147801 148123 HC_gene_4086_tx_159 12 - 147801 148123 . 1 323 0 -chrVIII 147801 148711 HC_gene_4086_tx_89 1 - 147801 148711 . 1 911 0 -chrVIII 147801 148711 HC_gene_4086_tx_90 2 - 147801 148711 . 2 316,45 0,866 -chrVIII 147802 148123 HC_gene_4086_tx_160 60 - 147802 148123 . 1 322 0 -chrVIII 147802 148711 HC_gene_4086_tx_91 3 - 147802 148711 . 1 910 0 -chrVIII 147802 148711 HC_gene_4086_tx_92 4 - 147802 148711 . 2 308,49 0,861 -chrVIII 147802 148711 HC_gene_4086_tx_93 12 - 147802 148711 . 2 315,45 0,865 -chrVIII 147803 148123 HC_gene_4086_tx_161 15 - 147803 148123 . 1 321 0 -chrVIII 147803 148711 HC_gene_4086_tx_94 4 - 147803 148711 . 2 314,45 0,864 -chrVIII 147803 148711 HC_gene_4086_tx_95 1 - 147803 148711 . 2 314,49 0,860 -chrVIII 147803 148711 HC_gene_4086_tx_96 1 - 147803 148711 . 2 307,45 0,864 -chrVIII 147804 148123 HC_gene_4086_tx_162 8 - 147804 148123 . 1 320 0 -chrVIII 147804 148711 HC_gene_4086_tx_97 3 - 147804 148711 . 2 313,45 0,863 -chrVIII 147805 148123 HC_gene_4086_tx_163 6 - 147805 148123 . 1 319 0 -chrVIII 147806 148123 HC_gene_4086_tx_164 15 - 147806 148123 . 1 318 0 -chrVIII 147806 148711 HC_gene_4086_tx_98 1 - 147806 148711 . 1 906 0 -chrVIII 147806 148711 HC_gene_4086_tx_99 1 - 147806 148711 . 2 304,49 0,857 -chrVIII 147806 148711 HC_gene_4086_tx_100 9 - 147806 148711 . 2 311,45 0,861 -chrVIII 147806 148711 HC_gene_4086_tx_101 1 - 147806 148711 . 2 304,45 0,861 -chrVIII 147807 148123 HC_gene_4086_tx_165 9 - 147807 148123 . 1 317 0 -chrVIII 147807 148711 HC_gene_4086_tx_102 2 - 147807 148711 . 2 310,45 0,860 -chrVIII 147808 148123 HC_gene_4086_tx_166 7 - 147808 148123 . 1 316 0 -chrVIII 147808 148711 HC_gene_4086_tx_103 1 - 147808 148711 . 2 309,45 0,859 -chrVIII 147809 148123 HC_gene_4086_tx_167 6 - 147809 148123 . 1 315 0 -chrVIII 147809 148711 HC_gene_4086_tx_104 1 - 147809 148711 . 1 903 0 -chrVIII 147809 148711 HC_gene_4086_tx_105 6 - 147809 148711 . 2 308,45 0,858 -chrVIII 147810 148711 HC_gene_4086_tx_106 1 - 147810 148711 . 2 307,45 0,857 -chrVIII 147811 148123 HC_gene_4086_tx_168 11 - 147811 148123 . 1 313 0 -chrVIII 147811 148711 HC_gene_4086_tx_107 1 - 147811 148711 . 2 306,45 0,856 -chrVIII 147812 148123 HC_gene_4086_tx_169 8 - 147812 148123 . 1 312 0 -chrVIII 147812 148711 HC_gene_4086_tx_108 1 - 147812 148711 . 1 900 0 -chrVIII 147812 148711 HC_gene_4086_tx_109 2 - 147812 148711 . 2 305,45 0,855 -chrVIII 147812 148711 HC_gene_4086_tx_110 1 - 147812 148711 . 2 298,49 0,851 -chrVIII 147813 148123 HC_gene_4086_tx_170 10 - 147813 148123 . 1 311 0 -chrVIII 147813 148711 HC_gene_4086_tx_111 1 - 147813 148711 . 2 297,49 0,850 -chrVIII 147814 148123 HC_gene_4086_tx_171 17 - 147814 148123 . 1 310 0 -chrVIII 147814 148711 HC_gene_4086_tx_112 2 - 147814 148711 . 1 898 0 -chrVIII 147814 148711 HC_gene_4086_tx_113 4 - 147814 148711 . 2 303,45 0,853 -chrVIII 147815 148123 HC_gene_4086_tx_172 18 - 147815 148123 . 1 309 0 -chrVIII 147815 148711 HC_gene_4086_tx_114 1 - 147815 148711 . 1 897 0 -chrVIII 147815 148711 HC_gene_4086_tx_115 2 - 147815 148711 . 2 295,49 0,848 -chrVIII 147815 148711 HC_gene_4086_tx_116 5 - 147815 148711 . 2 302,45 0,852 -chrVIII 147817 148123 HC_gene_4086_tx_173 15 - 147817 148123 . 1 307 0 -chrVIII 147817 148711 HC_gene_4086_tx_117 3 - 147817 148711 . 2 300,45 0,850 -chrVIII 147818 148123 HC_gene_4086_tx_174 8 - 147818 148123 . 1 306 0 -chrVIII 147818 148711 HC_gene_4086_tx_118 1 - 147818 148711 . 2 299,45 0,849 -chrVIII 147819 148711 HC_gene_4086_tx_119 1 - 147819 148711 . 2 298,45 0,848 -chrVIII 147820 148123 HC_gene_4086_tx_175 44 - 147820 148123 . 1 304 0 -chrVIII 147820 148711 HC_gene_4086_tx_120 6 - 147820 148711 . 2 297,45 0,847 -chrVIII 147821 148123 HC_gene_4086_tx_176 3 - 147821 148123 . 1 303 0 -chrVIII 147821 148711 HC_gene_4086_tx_121 1 - 147821 148711 . 2 296,45 0,846 -chrVIII 147822 148123 HC_gene_4086_tx_177 15 - 147822 148123 . 1 302 0 -chrVIII 147822 148711 HC_gene_4086_tx_122 1 - 147822 148711 . 1 890 0 -chrVIII 147822 148711 HC_gene_4086_tx_123 4 - 147822 148711 . 2 295,45 0,845 -chrVIII 147823 148123 HC_gene_4086_tx_178 6 - 147823 148123 . 1 301 0 -chrVIII 147823 148711 HC_gene_4086_tx_124 1 - 147823 148711 . 1 889 0 -chrVIII 147823 148711 HC_gene_4086_tx_125 2 - 147823 148711 . 2 294,45 0,844 -chrVIII 147823 148711 HC_gene_4086_tx_126 1 - 147823 148711 . 2 287,45 0,844 -chrVIII 147824 148123 HC_gene_4086_tx_179 4 - 147824 148123 . 1 300 0 -chrVIII 147825 148123 HC_gene_4086_tx_180 2 - 147825 148123 . 1 299 0 -chrVIII 147827 148123 HC_gene_4086_tx_181 5 - 147827 148123 . 1 297 0 -chrVIII 147829 148711 HC_gene_4086_tx_127 1 - 147829 148711 . 1 883 0 -chrVIII 148687 149213 LC_gene_3855_tx_1 1 + 148687 149213 . 1 527 0 -chrVIII 149167 150479 HC_gene_4087_tx_1 12 - 149167 150479 . 1 1313 0 -chrVIII 149167 150758 HC_gene_4087_tx_2 2 - 149167 150758 . 1 1592 0 -chrVIII 149344 149705 MC_gene_3856_tx_1 1 + 149344 149705 . 1 362 0 -chrVIII 150399 150758 HC_gene_4087_tx_3 3 - 150399 150758 . 1 360 0 -chrVIII 150399 151156 HC_gene_4087_tx_4 3 - 150399 151156 . 1 758 0 -chrVIII 150399 151232 HC_gene_4087_tx_5 2 - 150399 151232 . 1 834 0 -chrVIII 150683 151156 HC_gene_4087_tx_6 1 - 150683 151156 . 1 474 0 -chrVIII 150967 151415 HC_gene_3857_tx_1 2 + 150967 151415 . 1 449 0 -chrVIII 151611 157540 HC_gene_3858_tx_1 1 + 151611 157540 . 1 5930 0 -chrVIII 151611 157558 HC_gene_3858_tx_2 1 + 151611 157558 . 1 5948 0 -chrVIII 155861 157558 HC_gene_3859_tx_1 1 + 155861 157558 . 1 1698 0 -chrVIII 155861 157576 HC_gene_3859_tx_2 1 + 155861 157576 . 1 1716 0 -chrVIII 155861 157681 HC_gene_3859_tx_3 1 + 155861 157681 . 1 1821 0 -chrVIII 156158 157526 HC_gene_3859_tx_4 1 + 156158 157526 . 1 1369 0 -chrVIII 156877 157523 HC_gene_3859_tx_5 1 + 156877 157523 . 1 647 0 -chrVIII 156877 157526 HC_gene_3859_tx_6 1 + 156877 157526 . 1 650 0 -chrVIII 156877 157529 HC_gene_3859_tx_7 1 + 156877 157529 . 1 653 0 -chrVIII 156877 157534 HC_gene_3859_tx_8 1 + 156877 157534 . 1 658 0 -chrVIII 156877 157535 HC_gene_3859_tx_9 1 + 156877 157535 . 1 659 0 -chrVIII 156877 157539 HC_gene_3859_tx_10 1 + 156877 157539 . 1 663 0 -chrVIII 156877 157547 HC_gene_3859_tx_11 1 + 156877 157547 . 1 671 0 -chrVIII 156877 157557 HC_gene_3859_tx_12 1 + 156877 157557 . 1 681 0 -chrVIII 156877 157558 HC_gene_3859_tx_13 2 + 156877 157558 . 1 682 0 -chrVIII 156877 157681 HC_gene_3859_tx_14 2 + 156877 157681 . 1 805 0 -chrVIII 157609 158085 HC_gene_4088_tx_1 17 - 157609 158085 . 1 477 0 -chrVIII 157609 158473 HC_gene_4088_tx_2 10 - 157609 158473 . 1 865 0 -chrVIII 157609 158687 HC_gene_4088_tx_3 9 - 157609 158687 . 1 1079 0 -chrVIII 157609 158946 HC_gene_4088_tx_4 10 - 157609 158946 . 1 1338 0 -chrVIII 157609 159216 HC_gene_4088_tx_5 1 - 157609 159216 . 2 604,877 0,731 -chrVIII 157609 159216 HC_gene_4088_tx_6 63 - 157609 159216 . 1 1608 0 -chrVIII 157609 159216 HC_gene_4088_tx_7 1 - 157609 159216 . 2 570,917 0,691 -chrVIII 157609 159216 HC_gene_4088_tx_8 1 - 157609 159216 . 2 664,898 0,710 -chrVIII 157609 159216 HC_gene_4088_tx_9 1 - 157609 159216 . 2 566,929 0,679 -chrVIII 157609 159216 HC_gene_4088_tx_10 1 - 157609 159216 . 2 701,849 0,759 -chrVIII 157609 159216 HC_gene_4088_tx_11 1 - 157609 159216 . 2 570,970 0,638 -chrVIII 159407 160607 HC_gene_3860_tx_1 271 + 159407 160607 . 1 1201 0 -chrVIII 159930 160607 HC_gene_3860_tx_2 115 + 159930 160607 . 1 678 0 -chrVIII 160132 160607 HC_gene_3860_tx_3 62 + 160132 160607 . 1 476 0 -chrVIII 160519 161310 MC_gene_4089_tx_1 1 - 160519 161310 . 1 792 0 -chrVIII 160728 161631 HC_gene_3861_tx_1 120 + 160728 161631 . 1 904 0 -chrVIII 160728 161707 HC_gene_3861_tx_2 343 + 160728 161707 . 1 980 0 -chrVIII 160809 161631 HC_gene_3861_tx_3 18 + 160809 161631 . 1 823 0 -chrVIII 160809 161707 HC_gene_3861_tx_4 17 + 160809 161707 . 1 899 0 -chrVIII 161021 161631 HC_gene_3861_tx_5 6 + 161021 161631 . 1 611 0 -chrVIII 161021 161707 HC_gene_3861_tx_6 11 + 161021 161707 . 1 687 0 -chrVIII 161075 161631 HC_gene_3861_tx_7 17 + 161075 161631 . 1 557 0 -chrVIII 161075 161707 HC_gene_3861_tx_8 30 + 161075 161707 . 1 633 0 -chrVIII 161581 162052 HC_gene_4090_tx_1 1 - 161581 162052 . 1 472 0 -chrVIII 161583 162338 HC_gene_4091_tx_1 1 - 161583 162338 . 1 756 0 -chrVIII 161583 162589 HC_gene_4091_tx_18 1 - 161583 162589 . 1 1007 0 -chrVIII 161583 163193 HC_gene_4091_tx_29 1 - 161583 163193 . 1 1611 0 -chrVIII 161583 163844 HC_gene_4091_tx_63 1 - 161583 163844 . 1 2262 0 -chrVIII 161583 164747 HC_gene_4091_tx_64 1 - 161583 164747 . 1 3165 0 -chrVIII 161585 162182 HC_gene_4091_tx_106 1 - 161585 162182 . 1 598 0 -chrVIII 161585 163193 HC_gene_4091_tx_30 1 - 161585 163193 . 1 1609 0 -chrVIII 161586 162052 HC_gene_4090_tx_2 1 - 161586 162052 . 1 467 0 -chrVIII 161587 161929 HC_gene_4090_tx_3 3 - 161587 161929 . 1 343 0 -chrVIII 161587 162052 HC_gene_4090_tx_4 1 - 161587 162052 . 1 466 0 -chrVIII 161587 162338 HC_gene_4091_tx_2 2 - 161587 162338 . 1 752 0 -chrVIII 161587 162877 HC_gene_4091_tx_31 3 - 161587 162877 . 1 1291 0 -chrVIII 161587 162877 HC_gene_4091_tx_32 1 - 161587 162877 . 2 469,738 0,553 -chrVIII 161587 162962 HC_gene_4091_tx_33 1 - 161587 162962 . 1 1376 0 -chrVIII 161587 163844 HC_gene_4091_tx_65 1 - 161587 163844 . 1 2258 0 -chrVIII 161588 162338 HC_gene_4091_tx_3 1 - 161588 162338 . 1 751 0 -chrVIII 161589 161929 HC_gene_4090_tx_5 1 - 161589 161929 . 1 341 0 -chrVIII 161589 162052 HC_gene_4090_tx_6 2 - 161589 162052 . 1 464 0 -chrVIII 161589 162182 HC_gene_4091_tx_107 1 - 161589 162182 . 1 594 0 -chrVIII 161589 162338 HC_gene_4091_tx_4 1 - 161589 162338 . 1 750 0 -chrVIII 161589 163193 HC_gene_4091_tx_34 1 - 161589 163193 . 1 1605 0 -chrVIII 161589 163844 HC_gene_4091_tx_66 1 - 161589 163844 . 1 2256 0 -chrVIII 161590 162052 HC_gene_4090_tx_7 1 - 161590 162052 . 1 463 0 -chrVIII 161593 163193 HC_gene_4091_tx_35 1 - 161593 163193 . 1 1601 0 -chrVIII 161596 161929 HC_gene_4090_tx_8 1 - 161596 161929 . 1 334 0 -chrVIII 161597 162589 HC_gene_4091_tx_19 1 - 161597 162589 . 1 993 0 -chrVIII 161597 162877 HC_gene_4091_tx_36 2 - 161597 162877 . 1 1281 0 -chrVIII 161597 164747 HC_gene_4091_tx_67 4 - 161597 164747 . 1 3151 0 -chrVIII 161598 162338 HC_gene_4091_tx_5 1 - 161598 162338 . 1 741 0 -chrVIII 161598 162877 HC_gene_4091_tx_37 1 - 161598 162877 . 2 1077,131 0,1149 -chrVIII 161598 162877 HC_gene_4091_tx_38 1 - 161598 162877 . 1 1280 0 -chrVIII 161598 164612 HC_gene_4091_tx_68 1 - 161598 164612 . 1 3015 0 -chrVIII 161598 164737 HC_gene_4091_tx_69 1 - 161598 164737 . 2 2912,137 0,3003 -chrVIII 161598 164747 HC_gene_4091_tx_70 1 - 161598 164747 . 2 1929,1162 0,1988 -chrVIII 161599 162338 HC_gene_4091_tx_6 1 - 161599 162338 . 1 740 0 -chrVIII 161599 164052 HC_gene_4091_tx_71 1 - 161599 164052 . 1 2454 0 -chrVIII 161599 164747 HC_gene_4091_tx_72 1 - 161599 164747 . 1 3149 0 -chrVIII 161599 164747 HC_gene_4091_tx_73 1 - 161599 164747 . 2 1326,1718 0,1431 -chrVIII 161602 161929 HC_gene_4090_tx_9 2 - 161602 161929 . 1 328 0 -chrVIII 161602 162052 HC_gene_4090_tx_10 5 - 161602 162052 . 1 451 0 -chrVIII 161602 162182 HC_gene_4091_tx_108 3 - 161602 162182 . 1 581 0 -chrVIII 161602 162338 HC_gene_4091_tx_7 2 - 161602 162338 . 1 737 0 -chrVIII 161602 162589 HC_gene_4091_tx_20 2 - 161602 162589 . 1 988 0 -chrVIII 161602 162877 HC_gene_4091_tx_39 6 - 161602 162877 . 1 1276 0 -chrVIII 161602 162962 HC_gene_4091_tx_40 3 - 161602 162962 . 1 1361 0 -chrVIII 161602 163193 HC_gene_4091_tx_41 1 - 161602 163193 . 1 1592 0 -chrVIII 161602 164747 HC_gene_4091_tx_74 1 - 161602 164747 . 1 3146 0 -chrVIII 161603 161929 HC_gene_4090_tx_11 3 - 161603 161929 . 1 327 0 -chrVIII 161603 162052 HC_gene_4090_tx_12 4 - 161603 162052 . 1 450 0 -chrVIII 161603 162182 HC_gene_4091_tx_109 7 - 161603 162182 . 1 580 0 -chrVIII 161603 162338 HC_gene_4091_tx_8 4 - 161603 162338 . 1 736 0 -chrVIII 161603 162589 HC_gene_4091_tx_21 1 - 161603 162589 . 1 987 0 -chrVIII 161603 162877 HC_gene_4091_tx_42 6 - 161603 162877 . 1 1275 0 -chrVIII 161603 162962 HC_gene_4091_tx_43 1 - 161603 162962 . 1 1360 0 -chrVIII 161603 163193 HC_gene_4091_tx_44 2 - 161603 163193 . 1 1591 0 -chrVIII 161603 164052 HC_gene_4091_tx_75 1 - 161603 164052 . 1 2450 0 -chrVIII 161603 164747 HC_gene_4091_tx_76 9 - 161603 164747 . 1 3145 0 -chrVIII 161603 164747 HC_gene_4091_tx_77 1 - 161603 164747 . 2 1936,1162 0,1983 -chrVIII 161603 164747 HC_gene_4091_tx_78 1 - 161603 164747 . 3 1204,644,186 0,1896,2959 -chrVIII 161603 164747 HC_gene_4091_tx_79 1 - 161603 164747 . 2 1272,1669 0,1476 -chrVIII 161603 164747 HC_gene_4091_tx_80 1 - 161603 164747 . 2 1914,1129 0,2016 -chrVIII 161604 161929 HC_gene_4090_tx_13 2 - 161604 161929 . 1 326 0 -chrVIII 161604 162182 HC_gene_4091_tx_110 2 - 161604 162182 . 1 579 0 -chrVIII 161604 162338 HC_gene_4091_tx_9 2 - 161604 162338 . 1 735 0 -chrVIII 161604 162589 HC_gene_4091_tx_22 1 - 161604 162589 . 1 986 0 -chrVIII 161604 162877 HC_gene_4091_tx_45 2 - 161604 162877 . 1 1274 0 -chrVIII 161604 164263 HC_gene_4091_tx_81 1 - 161604 164263 . 1 2660 0 -chrVIII 161604 164747 HC_gene_4091_tx_82 2 - 161604 164747 . 1 3144 0 -chrVIII 161605 162338 HC_gene_4091_tx_10 2 - 161605 162338 . 1 734 0 -chrVIII 161605 164747 HC_gene_4091_tx_83 1 - 161605 164747 . 1 3143 0 -chrVIII 161606 161929 HC_gene_4090_tx_14 1 - 161606 161929 . 1 324 0 -chrVIII 161606 161985 HC_gene_4090_tx_15 1 - 161606 161985 . 1 380 0 -chrVIII 161606 162052 HC_gene_4090_tx_16 1 - 161606 162052 . 1 447 0 -chrVIII 161606 162182 HC_gene_4091_tx_111 3 - 161606 162182 . 1 577 0 -chrVIII 161606 162338 HC_gene_4091_tx_11 5 - 161606 162338 . 1 733 0 -chrVIII 161606 162589 HC_gene_4091_tx_23 2 - 161606 162589 . 1 984 0 -chrVIII 161606 162877 HC_gene_4091_tx_46 2 - 161606 162877 . 1 1272 0 -chrVIII 161606 162962 HC_gene_4091_tx_47 1 - 161606 162962 . 1 1357 0 -chrVIII 161606 163844 HC_gene_4091_tx_84 1 - 161606 163844 . 1 2239 0 -chrVIII 161606 164747 HC_gene_4091_tx_85 6 - 161606 164747 . 1 3142 0 -chrVIII 161606 164747 HC_gene_4091_tx_86 1 - 161606 164747 . 2 1881,1162 0,1980 -chrVIII 161607 162182 HC_gene_4091_tx_112 1 - 161607 162182 . 1 576 0 -chrVIII 161607 162338 HC_gene_4091_tx_12 3 - 161607 162338 . 1 732 0 -chrVIII 161607 162589 HC_gene_4091_tx_24 1 - 161607 162589 . 1 983 0 -chrVIII 161607 162877 HC_gene_4091_tx_48 2 - 161607 162877 . 1 1271 0 -chrVIII 161607 162962 HC_gene_4091_tx_49 2 - 161607 162962 . 1 1356 0 -chrVIII 161607 163844 HC_gene_4091_tx_87 3 - 161607 163844 . 1 2238 0 -chrVIII 161607 164052 HC_gene_4091_tx_88 1 - 161607 164052 . 1 2446 0 -chrVIII 161607 164747 HC_gene_4091_tx_89 1 - 161607 164747 . 2 1928,1114 0,2027 -chrVIII 161607 164747 HC_gene_4091_tx_90 6 - 161607 164747 . 1 3141 0 -chrVIII 161607 164747 HC_gene_4091_tx_91 1 - 161607 164747 . 3 2139,192,540 0,2322,2601 -chrVIII 161607 164747 HC_gene_4091_tx_92 1 - 161607 164747 . 2 1881,1162 0,1979 -chrVIII 161608 162338 HC_gene_4091_tx_13 1 - 161608 162338 . 1 731 0 -chrVIII 161608 162877 HC_gene_4091_tx_50 1 - 161608 162877 . 1 1270 0 -chrVIII 161608 164747 HC_gene_4091_tx_93 1 - 161608 164747 . 2 1927,1137 0,2003 -chrVIII 161610 162182 HC_gene_4091_tx_113 1 - 161610 162182 . 1 573 0 -chrVIII 161610 164747 HC_gene_4091_tx_94 1 - 161610 164747 . 2 1532,1384 0,1754 -chrVIII 161614 161929 HC_gene_4090_tx_17 1 - 161614 161929 . 1 316 0 -chrVIII 161614 161985 HC_gene_4090_tx_18 1 - 161614 161985 . 1 372 0 -chrVIII 161614 162052 HC_gene_4090_tx_19 1 - 161614 162052 . 1 439 0 -chrVIII 161614 162182 HC_gene_4091_tx_114 2 - 161614 162182 . 1 569 0 -chrVIII 161614 162877 HC_gene_4091_tx_51 3 - 161614 162877 . 1 1264 0 -chrVIII 161614 162962 HC_gene_4091_tx_52 2 - 161614 162962 . 1 1349 0 -chrVIII 161614 163844 HC_gene_4091_tx_95 1 - 161614 163844 . 1 2231 0 -chrVIII 161614 164747 HC_gene_4091_tx_96 2 - 161614 164747 . 1 3134 0 -chrVIII 161615 162182 HC_gene_4091_tx_115 1 - 161615 162182 . 1 568 0 -chrVIII 161615 162877 HC_gene_4091_tx_53 1 - 161615 162877 . 1 1263 0 -chrVIII 161615 164747 HC_gene_4091_tx_97 1 - 161615 164747 . 2 950,1270 0,1863 -chrVIII 161616 161929 HC_gene_4090_tx_20 1 - 161616 161929 . 1 314 0 -chrVIII 161616 161985 HC_gene_4090_tx_21 1 - 161616 161985 . 1 370 0 -chrVIII 161616 164747 HC_gene_4091_tx_98 1 - 161616 164747 . 1 3132 0 -chrVIII 161617 162182 HC_gene_4091_tx_116 1 - 161617 162182 . 1 566 0 -chrVIII 161617 162877 HC_gene_4091_tx_54 1 - 161617 162877 . 1 1261 0 -chrVIII 161617 163193 HC_gene_4091_tx_55 1 - 161617 163193 . 1 1577 0 -chrVIII 161617 164612 HC_gene_4091_tx_99 1 - 161617 164612 . 1 2996 0 -chrVIII 161620 162877 HC_gene_4091_tx_56 2 - 161620 162877 . 1 1258 0 -chrVIII 161620 163844 HC_gene_4091_tx_100 1 - 161620 163844 . 1 2225 0 -chrVIII 161620 164747 HC_gene_4091_tx_101 1 - 161620 164747 . 1 3128 0 -chrVIII 161621 164747 HC_gene_4091_tx_102 1 - 161621 164747 . 1 3127 0 -chrVIII 161622 162182 HC_gene_4091_tx_117 1 - 161622 162182 . 1 561 0 -chrVIII 161622 162338 HC_gene_4091_tx_14 2 - 161622 162338 . 1 717 0 -chrVIII 161622 162589 HC_gene_4091_tx_25 2 - 161622 162589 . 1 968 0 -chrVIII 161622 162877 HC_gene_4091_tx_57 1 - 161622 162877 . 2 773,312 0,944 -chrVIII 161622 162877 HC_gene_4091_tx_58 1 - 161622 162877 . 1 1256 0 -chrVIII 161622 164612 HC_gene_4091_tx_103 1 - 161622 164612 . 1 2991 0 -chrVIII 161624 162338 HC_gene_4091_tx_15 1 - 161624 162338 . 1 715 0 -chrVIII 161624 162877 HC_gene_4091_tx_59 1 - 161624 162877 . 2 882,195 0,1059 -chrVIII 161625 162877 HC_gene_4091_tx_60 1 - 161625 162877 . 1 1253 0 -chrVIII 161626 162338 HC_gene_4091_tx_16 1 - 161626 162338 . 1 713 0 -chrVIII 161626 162589 HC_gene_4091_tx_26 1 - 161626 162589 . 1 964 0 -chrVIII 161626 162877 HC_gene_4091_tx_61 1 - 161626 162877 . 1 1252 0 -chrVIII 161627 162338 HC_gene_4091_tx_17 1 - 161627 162338 . 1 712 0 -chrVIII 161627 162589 HC_gene_4091_tx_27 1 - 161627 162589 . 1 963 0 -chrVIII 161627 162877 HC_gene_4091_tx_62 1 - 161627 162877 . 1 1251 0 -chrVIII 161629 164747 HC_gene_4091_tx_104 1 - 161629 164747 . 1 3119 0 -chrVIII 161630 161985 HC_gene_4090_tx_22 1 - 161630 161985 . 1 356 0 -chrVIII 161630 162589 HC_gene_4091_tx_28 1 - 161630 162589 . 1 960 0 -chrVIII 161633 164747 HC_gene_4091_tx_105 1 - 161633 164747 . 1 3115 0 -chrVIII 164872 166207 HC_gene_4092_tx_1 4 - 164872 166207 . 1 1336 0 -chrVIII 164872 166710 HC_gene_4092_tx_2 1 - 164872 166710 . 1 1839 0 -chrVIII 164872 167008 HC_gene_4092_tx_3 4 - 164872 167008 . 1 2137 0 -chrVIII 164872 167317 HC_gene_4092_tx_4 1 - 164872 167317 . 1 2446 0 -chrVIII 164872 167498 HC_gene_4092_tx_5 17 - 164872 167498 . 1 2627 0 -chrVIII 164872 167498 HC_gene_4092_tx_6 1 - 164872 167498 . 2 1330,1187 0,1440 -chrVIII 164983 166463 HC_gene_3862_tx_1 9 + 164983 166463 . 1 1481 0 -chrVIII 164983 167145 HC_gene_3862_tx_2 1 + 164983 167145 . 1 2163 0 -chrVIII 167592 168206 HC_gene_4093_tx_1 15 - 167592 168206 . 1 615 0 -chrVIII 167592 168508 HC_gene_4093_tx_2 1 - 167592 168508 . 1 917 0 -chrVIII 167592 168575 HC_gene_4093_tx_3 77 - 167592 168575 . 1 984 0 -chrVIII 167592 168575 HC_gene_4093_tx_4 1 - 167592 168575 . 2 455,276 0,708 -chrVIII 167592 168575 HC_gene_4093_tx_5 1 - 167592 168575 . 2 301,503 0,481 -chrVIII 167650 168221 MC_gene_3863_tx_1 1 + 167650 168221 . 1 572 0 -chrVIII 168734 169160 HC_gene_4094_tx_1 17 - 168734 169160 . 1 427 0 -chrVIII 168734 169265 HC_gene_4094_tx_2 29 - 168734 169265 . 1 532 0 -chrVIII 168734 169325 HC_gene_4094_tx_3 15 - 168734 169325 . 1 592 0 -chrVIII 168734 169416 HC_gene_4094_tx_4 9 - 168734 169416 . 1 683 0 -chrVIII 168734 169595 HC_gene_4094_tx_5 14 - 168734 169595 . 1 862 0 -chrVIII 168734 170382 HC_gene_4094_tx_6 99 - 168734 170382 . 1 1649 0 -chrVIII 168734 170382 HC_gene_4094_tx_7 1 - 168734 170382 . 2 863,720 0,929 -chrVIII 168734 170382 HC_gene_4094_tx_8 1 - 168734 170382 . 2 640,110 0,1539 -chrVIII 168734 170421 HC_gene_4094_tx_9 1 - 168734 170421 . 2 1571,40 0,1648 -chrVIII 170396 173012 HC_gene_4095_tx_1 2 - 170396 173012 . 1 2617 0 -chrVIII 170571 173012 HC_gene_4095_tx_2 1 - 170571 173012 . 1 2442 0 -chrVIII 170635 172763 HC_gene_4095_tx_3 2 - 170635 172763 . 1 2129 0 -chrVIII 170635 173012 HC_gene_4095_tx_4 4 - 170635 173012 . 1 2378 0 -chrVIII 170720 171632 MC_gene_3864_tx_1 1 + 170720 171632 . 1 913 0 -chrVIII 173247 175503 HC_gene_3865_tx_1 47 + 173247 175503 . 1 2257 0 -chrVIII 173247 175503 HC_gene_3865_tx_2 1 + 173247 175503 . 2 845,1340 0,917 -chrVIII 173247 175503 HC_gene_3865_tx_3 1 + 173247 175503 . 2 1180,1028 0,1229 -chrVIII 173286 175503 HC_gene_3865_tx_4 1 + 173286 175503 . 1 2218 0 -chrVIII 173421 175503 HC_gene_3865_tx_5 4 + 173421 175503 . 1 2083 0 -chrVIII 175408 176805 LC_gene_4096_tx_1 1 - 175408 176805 . 1 1398 0 -chrVIII 175522 176962 HC_gene_3866_tx_1 1 + 175522 176962 . 1 1441 0 -chrVIII 176946 178034 HC_gene_4097_tx_1 17 - 176946 178034 . 1 1089 0 -chrVIII 176992 177180 MC_gene_3867_tx_1 1 + 176992 177180 . 1 189 0 -chrVIII 178190 178567 HC_gene_3868_tx_1 5 + 178190 178567 . 1 378 0 -chrVIII 178190 180366 HC_gene_3868_tx_2 3 + 178190 180366 . 1 2177 0 -chrVIII 179059 179692 MC_gene_4098_tx_1 1 - 179059 179692 . 1 634 0 -chrVIII 180236 181977 HC_gene_3869_tx_1 1 + 180236 181977 . 1 1742 0 -chrVIII 180236 181979 HC_gene_3869_tx_2 1 + 180236 181979 . 1 1744 0 -chrVIII 180236 181980 HC_gene_3869_tx_3 1 + 180236 181980 . 1 1745 0 -chrVIII 180236 181985 HC_gene_3869_tx_4 2 + 180236 181985 . 1 1750 0 -chrVIII 180236 182013 HC_gene_3869_tx_5 1 + 180236 182013 . 1 1778 0 -chrVIII 180404 181985 HC_gene_3869_tx_6 1 + 180404 181985 . 1 1582 0 -chrVIII 181079 181721 HC_gene_4099_tx_1 1 - 181079 181721 . 1 643 0 -chrVIII 181956 183876 HC_gene_3870_tx_1 23 + 181956 183876 . 1 1921 0 -chrVIII 181956 183876 HC_gene_3870_tx_2 1 + 181956 183876 . 2 967,878 0,1043 -chrVIII 182120 183876 HC_gene_3870_tx_3 2 + 182120 183876 . 1 1757 0 -chrVIII 183166 183876 HC_gene_3870_tx_4 5 + 183166 183876 . 1 711 0 -chrVIII 183792 184497 MC_gene_4100_tx_1 1 - 183792 184497 . 1 706 0 -chrVIII 184028 184850 HC_gene_3871_tx_1 30 + 184028 184850 . 1 823 0 -chrVIII 184278 184850 HC_gene_3871_tx_2 10 + 184278 184850 . 1 573 0 -chrVIII 184736 185672 HC_gene_4101_tx_1 17 - 184736 185672 . 1 937 0 -chrVIII 184736 186365 HC_gene_4101_tx_2 7 - 184736 186365 . 1 1630 0 -chrVIII 184736 186920 HC_gene_4101_tx_3 57 - 184736 186920 . 1 2185 0 -chrVIII 184736 186920 HC_gene_4101_tx_4 1 - 184736 186920 . 2 615,1473 0,712 -chrVIII 187059 187526 HC_gene_4102_tx_1 1272 - 187059 187526 . 1 468 0 -chrVIII 187059 187697 HC_gene_4102_tx_2 52 - 187059 187697 . 1 639 0 -chrVIII 187140 187589 MC_gene_3872_tx_1 1 + 187140 187589 . 1 450 0 -chrVIII 187907 189133 MC_gene_3873_tx_1 1 + 187907 189133 . 1 1227 0 -chrVIII 188907 189875 HC_gene_4103_tx_1 3 - 188907 189875 . 1 969 0 -chrVIII 189022 189875 HC_gene_4103_tx_2 76 - 189022 189875 . 1 854 0 -chrVIII 189022 189875 HC_gene_4103_tx_3 1 - 189022 189875 . 2 272,428 0,426 -chrVIII 189138 190125 MC_gene_3874_tx_1 1 + 189138 190125 . 1 988 0 -chrVIII 189462 190458 MC_gene_3875_tx_1 1 + 189462 190458 . 1 997 0 -chrVIII 190012 190421 LC_gene_4104_tx_1 1 - 190012 190421 . 1 410 0 -chrVIII 190050 190354 MC_gene_3875_tx_2 1 + 190050 190354 . 1 305 0 -chrVIII 190502 192839 HC_gene_3876_tx_1 80 + 190502 192839 . 1 2338 0 -chrVIII 190502 192839 HC_gene_3876_tx_2 1 + 190502 192839 . 2 2135,49 0,2289 -chrVIII 190502 192839 HC_gene_3876_tx_3 1 + 190502 192839 . 2 50,2207 0,131 -chrVIII 190586 192839 HC_gene_3876_tx_4 6 + 190586 192839 . 1 2254 0 -chrVIII 191797 192839 HC_gene_3876_tx_5 26 + 191797 192839 . 1 1043 0 -chrVIII 191922 192839 HC_gene_3876_tx_6 65 + 191922 192839 . 1 918 0 -chrVIII 192502 192839 HC_gene_3876_tx_7 19 + 192502 192839 . 1 338 0 -chrVIII 192723 193648 HC_gene_4105_tx_1 119 - 192723 193648 . 1 926 0 -chrVIII 193745 194054 MC_gene_3877_tx_1 1 + 193745 194054 . 1 310 0 -chrVIII 193813 194859 HC_gene_4106_tx_1 6 - 193813 194859 . 1 1047 0 -chrVIII 193813 194983 HC_gene_4106_tx_2 3 - 193813 194983 . 1 1171 0 -chrVIII 193813 195210 HC_gene_4106_tx_3 1 - 193813 195210 . 1 1398 0 -chrVIII 193954 194859 HC_gene_4106_tx_4 16 - 193954 194859 . 1 906 0 -chrVIII 193954 194983 HC_gene_4106_tx_5 4 - 193954 194983 . 1 1030 0 -chrVIII 193954 195210 HC_gene_4106_tx_6 4 - 193954 195210 . 1 1257 0 -chrVIII 194868 195210 HC_gene_4106_tx_7 2 - 194868 195210 . 1 343 0 -chrVIII 195409 197362 HC_gene_3878_tx_1 25 + 195409 197362 . 1 1954 0 -chrVIII 195409 198056 HC_gene_3878_tx_2 1 + 195409 198056 . 2 1400,1130 0,1518 -chrVIII 196676 197362 HC_gene_3878_tx_3 5 + 196676 197362 . 1 687 0 -chrVIII 196676 198056 HC_gene_3878_tx_4 1 + 196676 198056 . 1 1381 0 -chrVIII 197178 197636 HC_gene_4107_tx_1 14 - 197178 197636 . 1 459 0 -chrVIII 197178 197757 HC_gene_4107_tx_2 18 - 197178 197757 . 1 580 0 -chrVIII 197178 197865 HC_gene_4107_tx_3 12 - 197178 197865 . 1 688 0 -chrVIII 197178 197865 HC_gene_4107_tx_4 1 - 197178 197865 . 2 387,210 0,478 -chrVIII 197178 198048 HC_gene_4107_tx_5 8 - 197178 198048 . 1 871 0 -chrVIII 197178 198161 HC_gene_4107_tx_6 10 - 197178 198161 . 1 984 0 -chrVIII 197178 198161 HC_gene_4107_tx_7 1 - 197178 198161 . 2 270,639 0,345 -chrVIII 197178 198317 HC_gene_4107_tx_8 59 - 197178 198317 . 1 1140 0 -chrVIII 197178 198317 HC_gene_4107_tx_9 1 - 197178 198317 . 2 291,498 0,642 -chrVIII 197178 198317 HC_gene_4107_tx_10 1 - 197178 198317 . 2 105,937 0,203 -chrVIII 197805 198317 HC_gene_4107_tx_11 3 - 197805 198317 . 1 513 0 -chrVIII 198591 200502 HC_gene_4108_tx_1 4 - 198591 200502 . 1 1912 0 -chrVIII 198591 200757 HC_gene_4108_tx_2 4 - 198591 200757 . 1 2167 0 -chrVIII 198591 201126 HC_gene_4108_tx_3 1 - 198591 201126 . 2 986,1503 0,1033 -chrVIII 198591 201126 HC_gene_4108_tx_4 2 - 198591 201126 . 1 2536 0 -chrVIII 198591 201339 HC_gene_4108_tx_5 39 - 198591 201339 . 1 2749 0 -chrVIII 198591 201339 HC_gene_4108_tx_6 1 - 198591 201339 . 2 949,1740 0,1009 -chrVIII 198591 201339 HC_gene_4108_tx_7 1 - 198591 201339 . 2 1257,729 0,2020 -chrVIII 198591 201339 HC_gene_4108_tx_8 1 - 198591 201339 . 2 1265,1418 0,1331 -chrVIII 198591 201339 HC_gene_4108_tx_9 1 - 198591 201339 . 2 974,1722 0,1027 -chrVIII 198591 201339 HC_gene_4108_tx_10 1 - 198591 201339 . 2 936,1673 0,1076 -chrVIII 198651 199061 MC_gene_3879_tx_1 1 + 198651 199061 . 1 411 0 -chrVIII 201627 204250 MC_gene_4109_tx_1 1 - 201627 204250 . 1 2624 0 -chrVIII 201633 201951 HC_gene_3880_tx_1 13 + 201633 201951 . 1 319 0 -chrVIII 201838 203395 MC_gene_4109_tx_2 1 - 201838 203395 . 1 1558 0 -chrVIII 202473 203581 MC_gene_4109_tx_3 1 - 202473 203581 . 1 1109 0 -chrVIII 202530 202856 MC_gene_4109_tx_4 1 - 202530 202856 . 1 327 0 -chrVIII 203731 204625 HC_gene_3881_tx_1 1 + 203731 204625 . 1 895 0 -chrVIII 204474 206082 HC_gene_4110_tx_1 3 - 204474 206082 . 1 1609 0 -chrVIII 204474 207274 HC_gene_4110_tx_2 4 - 204474 207274 . 1 2801 0 -chrVIII 204474 207274 HC_gene_4110_tx_3 1 - 204474 207274 . 2 1239,1492 0,1309 -chrVIII 204553 205623 HC_gene_3882_tx_1 1 + 204553 205623 . 1 1071 0 -chrVIII 204553 206404 HC_gene_3882_tx_2 8 + 204553 206404 . 1 1852 0 -chrVIII 204553 206474 HC_gene_3882_tx_3 3 + 204553 206474 . 1 1922 0 -chrVIII 204553 207322 HC_gene_3882_tx_4 1 + 204553 207322 . 1 2770 0 -chrVIII 206419 207322 HC_gene_3882_tx_5 185 + 206419 207322 . 1 904 0 -chrVIII 206419 207322 HC_gene_3882_tx_6 1 + 206419 207322 . 2 707,146 0,758 -chrVIII 206419 207444 HC_gene_3882_tx_7 3 + 206419 207444 . 1 1026 0 -chrVIII 206439 207444 HC_gene_3882_tx_8 1 + 206439 207444 . 1 1006 0 -chrVIII 206635 207322 HC_gene_3882_tx_9 31 + 206635 207322 . 1 688 0 -chrVIII 206774 207322 HC_gene_3882_tx_10 38 + 206774 207322 . 1 549 0 -chrVIII 206774 207444 HC_gene_3882_tx_11 2 + 206774 207444 . 1 671 0 -chrVIII 207316 207708 MC_gene_4111_tx_1 1 - 207316 207708 . 1 393 0 -chrVIII 207470 209362 HC_gene_3883_tx_1 56 + 207470 209362 . 1 1893 0 -chrVIII 207470 209362 HC_gene_3883_tx_2 1 + 207470 209362 . 2 1120,701 0,1192 -chrVIII 207470 209362 HC_gene_3883_tx_3 1 + 207470 209362 . 2 1199,639 0,1254 -chrVIII 209544 210269 HC_gene_3884_tx_1 170 + 209544 210269 . 1 726 0 -chrVIII 209544 210427 HC_gene_3884_tx_2 43 + 209544 210427 . 1 884 0 -chrVIII 209544 210638 HC_gene_3884_tx_3 81 + 209544 210638 . 1 1095 0 -chrVIII 209655 210183 MC_gene_4112_tx_1 1 - 209655 210183 . 1 529 0 -chrVIII 209717 210269 HC_gene_3884_tx_10 6 + 209717 210269 . 1 553 0 -chrVIII 209717 210427 HC_gene_3884_tx_4 3 + 209717 210427 . 1 711 0 -chrVIII 209717 210638 HC_gene_3884_tx_5 7 + 209717 210638 . 1 922 0 -chrVIII 209771 210269 HC_gene_3884_tx_11 3 + 209771 210269 . 1 499 0 -chrVIII 209771 210427 HC_gene_3884_tx_6 3 + 209771 210427 . 1 657 0 -chrVIII 209771 210638 HC_gene_3884_tx_7 3 + 209771 210638 . 1 868 0 -chrVIII 209911 210269 HC_gene_3884_tx_12 5 + 209911 210269 . 1 359 0 -chrVIII 209911 210427 HC_gene_3884_tx_13 4 + 209911 210427 . 1 517 0 -chrVIII 209911 210638 HC_gene_3884_tx_8 16 + 209911 210638 . 1 728 0 -chrVIII 210032 210269 HC_gene_3884_tx_14 11 + 210032 210269 . 1 238 0 -chrVIII 210032 210427 HC_gene_3884_tx_15 4 + 210032 210427 . 1 396 0 -chrVIII 210032 210638 HC_gene_3884_tx_9 13 + 210032 210638 . 1 607 0 -chrVIII 210333 210638 HC_gene_3884_tx_16 14 + 210333 210638 . 1 306 0 -chrVIII 210810 212133 HC_gene_3885_tx_1 127 + 210810 212133 . 1 1324 0 -chrVIII 210810 212133 HC_gene_3885_tx_2 1 + 210810 212133 . 2 469,777 0,547 -chrVIII 210810 212133 HC_gene_3885_tx_3 1 + 210810 212133 . 2 1185,56 0,1268 -chrVIII 210810 212242 HC_gene_3885_tx_4 2 + 210810 212242 . 1 1433 0 -chrVIII 210820 212133 HC_gene_3885_tx_5 1 + 210820 212133 . 2 383,877 0,437 -chrVIII 211198 212133 HC_gene_3885_tx_6 14 + 211198 212133 . 1 936 0 -chrVIII 211316 212133 HC_gene_3885_tx_7 19 + 211316 212133 . 1 818 0 -chrVIII 211316 212242 HC_gene_3885_tx_8 1 + 211316 212242 . 1 927 0 -chrVIII 211434 212133 HC_gene_3885_tx_9 24 + 211434 212133 . 1 700 0 -chrVIII 211434 212242 HC_gene_3885_tx_10 3 + 211434 212242 . 1 809 0 -chrVIII 211519 212773 LC_gene_4113_tx_1 1 - 211519 212773 . 1 1255 0 -chrVIII 213053 214366 LC_gene_4114_tx_1 1 - 213053 214366 . 1 1314 0 -chrVIII 213832 214461 LC_gene_3886_tx_1 1 + 213832 214461 . 1 630 0 -chrVIII 216822 217675 HC_gene_4115_tx_1 1 - 216822 217675 . 1 854 0 -chrVIII 218086 218249 HC_gene_3887_tx_1 3 + 218086 218249 . 1 164 0 -chrVIII 218103 218771 HC_gene_4116_tx_1 5 - 218103 218771 . 1 669 0 -chrVIII 218103 218858 HC_gene_4116_tx_2 129 - 218103 218858 . 1 756 0 -chrVIII 218103 219898 HC_gene_4116_tx_3 7 - 218103 219898 . 1 1796 0 -chrVIII 218800 219556 LC_gene_3888_tx_1 1 + 218800 219556 . 2 275,167 0,590 -chrVIII 218938 219898 HC_gene_4116_tx_4 20 - 218938 219898 . 1 961 0 -chrVIII 220055 220602 HC_gene_3889_tx_1 76 + 220055 220602 . 1 548 0 -chrVIII 220735 221354 HC_gene_3890_tx_1 161 + 220735 221354 . 1 620 0 -chrVIII 220735 221354 HC_gene_3890_tx_2 1 + 220735 221354 . 2 306,180 0,440 -chrVIII 220735 221354 HC_gene_3890_tx_3 1 + 220735 221354 . 2 330,225 0,395 -chrVIII 220920 221354 HC_gene_3890_tx_4 17 + 220920 221354 . 1 435 0 -chrVIII 220920 221354 HC_gene_3890_tx_5 1 + 220920 221354 . 2 127,240 0,195 -chrVIII 221268 222517 HC_gene_4117_tx_1 20 - 221268 222517 . 1 1250 0 -chrVIII 221268 222517 HC_gene_4117_tx_2 1 - 221268 222517 . 2 812,366 0,884 -chrVIII 221268 222613 HC_gene_4117_tx_3 10 - 221268 222613 . 1 1346 0 -chrVIII 221432 222925 HC_gene_3891_tx_1 2 + 221432 222925 . 1 1494 0 -chrVIII 221812 222925 HC_gene_3891_tx_2 2 + 221812 222925 . 1 1114 0 -chrVIII 222817 223780 HC_gene_4118_tx_1 60 - 222817 223780 . 1 964 0 -chrVIII 222942 224065 HC_gene_3892_tx_1 3 + 222942 224065 . 1 1124 0 -chrVIII 223945 224437 HC_gene_4119_tx_1 8 - 223945 224437 . 1 493 0 -chrVIII 223945 224805 HC_gene_4119_tx_2 10 - 223945 224805 . 1 861 0 -chrVIII 223945 225118 HC_gene_4119_tx_3 1 - 223945 225118 . 1 1174 0 -chrVIII 223945 225200 HC_gene_4119_tx_4 75 - 223945 225200 . 1 1256 0 -chrVIII 223945 225200 HC_gene_4119_tx_5 1 - 223945 225200 . 2 609,124 0,1132 -chrVIII 225234 225811 HC_gene_4120_tx_1 1 - 225234 225811 . 1 578 0 -chrVIII 225234 226667 HC_gene_4120_tx_6 1 - 225234 226667 . 1 1434 0 -chrVIII 225234 226752 HC_gene_4120_tx_7 1 - 225234 226752 . 1 1519 0 -chrVIII 225234 227184 HC_gene_4120_tx_8 1 - 225234 227184 . 1 1951 0 -chrVIII 225341 225811 HC_gene_4120_tx_2 1 - 225341 225811 . 1 471 0 -chrVIII 225341 225886 HC_gene_4120_tx_3 2 - 225341 225886 . 1 546 0 -chrVIII 225341 226825 HC_gene_4120_tx_9 1 - 225341 226825 . 1 1485 0 -chrVIII 225341 227071 HC_gene_4120_tx_10 1 - 225341 227071 . 1 1731 0 -chrVIII 225341 227184 HC_gene_4120_tx_11 10 - 225341 227184 . 1 1844 0 -chrVIII 225341 227184 HC_gene_4120_tx_12 1 - 225341 227184 . 2 761,1037 0,807 -chrVIII 225398 225811 HC_gene_4120_tx_4 44 - 225398 225811 . 1 414 0 -chrVIII 225398 225886 HC_gene_4120_tx_5 58 - 225398 225886 . 1 489 0 -chrVIII 225398 226220 HC_gene_4120_tx_13 17 - 225398 226220 . 1 823 0 -chrVIII 225398 226277 HC_gene_4120_tx_14 23 - 225398 226277 . 1 880 0 -chrVIII 225398 226328 HC_gene_4120_tx_15 13 - 225398 226328 . 1 931 0 -chrVIII 225398 226541 HC_gene_4120_tx_16 23 - 225398 226541 . 1 1144 0 -chrVIII 225398 226667 HC_gene_4120_tx_17 29 - 225398 226667 . 1 1270 0 -chrVIII 225398 226752 HC_gene_4120_tx_18 7 - 225398 226752 . 1 1355 0 -chrVIII 225398 226825 HC_gene_4120_tx_19 27 - 225398 226825 . 1 1428 0 -chrVIII 225398 226984 HC_gene_4120_tx_20 22 - 225398 226984 . 1 1587 0 -chrVIII 225398 227071 HC_gene_4120_tx_21 17 - 225398 227071 . 1 1674 0 -chrVIII 225398 227184 HC_gene_4120_tx_22 176 - 225398 227184 . 1 1787 0 -chrVIII 225398 227184 HC_gene_4120_tx_23 1 - 225398 227184 . 2 761,764 0,1023 -chrVIII 225398 227184 HC_gene_4120_tx_24 1 - 225398 227184 . 2 719,1019 0,768 -chrVIII 225398 227184 HC_gene_4120_tx_25 1 - 225398 227184 . 2 778,952 0,835 -chrVIII 225398 227184 HC_gene_4120_tx_26 1 - 225398 227184 . 2 83,1666 0,121 -chrVIII 225398 227184 HC_gene_4120_tx_27 1 - 225398 227184 . 2 781,491 0,1296 -chrVIII 225398 227184 HC_gene_4120_tx_28 1 - 225398 227184 . 2 325,1339 0,448 -chrVIII 227414 227811 HC_gene_4121_tx_1 25 - 227414 227811 . 1 398 0 -chrVIII 227414 227887 HC_gene_4121_tx_2 7 - 227414 227887 . 1 474 0 -chrVIII 227414 229081 HC_gene_4121_tx_3 66 - 227414 229081 . 1 1668 0 -chrVIII 227414 229081 HC_gene_4121_tx_4 1 - 227414 229081 . 2 683,932 0,736 -chrVIII 227414 229081 HC_gene_4121_tx_5 1 - 227414 229081 . 2 691,941 0,727 -chrVIII 227414 229081 HC_gene_4121_tx_6 1 - 227414 229081 . 2 677,932 0,736 -chrVIII 229300 230746 HC_gene_3893_tx_1 20 + 229300 230746 . 1 1447 0 -chrVIII 229300 230813 HC_gene_3893_tx_2 50 + 229300 230813 . 1 1514 0 -chrVIII 229300 232146 HC_gene_3893_tx_3 1 + 229300 232146 . 1 2847 0 -chrVIII 230261 230746 HC_gene_3893_tx_4 3 + 230261 230746 . 1 486 0 -chrVIII 230261 230813 HC_gene_3893_tx_5 13 + 230261 230813 . 1 553 0 -chrVIII 230261 232146 HC_gene_3893_tx_6 1 + 230261 232146 . 1 1886 0 -chrVIII 230912 232146 HC_gene_3893_tx_7 6 + 230912 232146 . 1 1235 0 -chrVIII 230912 233541 HC_gene_3893_tx_8 1 + 230912 233541 . 1 2630 0 -chrVIII 231229 231852 MC_gene_4122_tx_1 1 - 231229 231852 . 1 624 0 -chrVIII 232060 233464 HC_gene_3893_tx_9 1 + 232060 233464 . 2 715,618 0,787 -chrVIII 232076 233409 HC_gene_3893_tx_10 6 + 232076 233409 . 1 1334 0 -chrVIII 232076 233464 HC_gene_3893_tx_11 131 + 232076 233464 . 1 1389 0 -chrVIII 232076 233464 HC_gene_3893_tx_12 1 + 232076 233464 . 2 248,529 0,860 -chrVIII 232076 233464 HC_gene_3893_tx_13 1 + 232076 233464 . 2 409,923 0,466 -chrVIII 232076 233464 HC_gene_3893_tx_14 1 + 232076 233464 . 2 779,560 0,829 -chrVIII 232076 233464 HC_gene_3893_tx_15 1 + 232076 233464 . 2 673,600 0,789 -chrVIII 232076 233464 HC_gene_3893_tx_16 1 + 232076 233464 . 2 1262,67 0,1322 -chrVIII 232076 233464 HC_gene_3893_tx_17 1 + 232076 233464 . 2 1232,60 0,1329 -chrVIII 232076 233464 HC_gene_3893_tx_18 1 + 232076 233464 . 2 767,529 0,860 -chrVIII 232076 233541 HC_gene_3893_tx_19 70 + 232076 233541 . 1 1466 0 -chrVIII 232076 233541 HC_gene_3893_tx_20 1 + 232076 233541 . 2 806,554 0,912 -chrVIII 232523 233464 HC_gene_3893_tx_21 11 + 232523 233464 . 1 942 0 -chrVIII 232523 233541 HC_gene_3893_tx_22 2 + 232523 233541 . 1 1019 0 -chrVIII 232587 233464 HC_gene_3893_tx_23 12 + 232587 233464 . 1 878 0 -chrVIII 232587 233541 HC_gene_3893_tx_24 4 + 232587 233541 . 1 955 0 -chrVIII 232773 233464 HC_gene_3893_tx_25 21 + 232773 233464 . 1 692 0 -chrVIII 232773 233541 HC_gene_3893_tx_26 8 + 232773 233541 . 1 769 0 -chrVIII 233328 234673 HC_gene_4123_tx_1 1 - 233328 234673 . 1 1346 0 -chrVIII 233440 234673 HC_gene_4123_tx_2 77 - 233440 234673 . 1 1234 0 -chrVIII 233440 234673 HC_gene_4123_tx_3 1 - 233440 234673 . 2 473,655 0,579 -chrVIII 233440 234673 HC_gene_4123_tx_4 1 - 233440 234673 . 2 440,698 0,536 -chrVIII 233440 234673 HC_gene_4123_tx_5 1 - 233440 234673 . 2 182,1008 0,226 -chrVIII 233440 234673 HC_gene_4123_tx_6 1 - 233440 234673 . 2 529,645 0,589 -chrVIII 234791 236729 HC_gene_3894_tx_1 3 + 234791 236729 . 1 1939 0 -chrVIII 234791 236729 HC_gene_3894_tx_2 1 + 234791 236729 . 2 1143,702 0,1237 -chrVIII 234791 237746 HC_gene_3894_tx_7 1 + 234791 237746 . 1 2956 0 -chrVIII 234858 236045 MC_gene_4124_tx_1 1 - 234858 236045 . 1 1188 0 -chrVIII 234862 236639 HC_gene_3894_tx_3 3 + 234862 236639 . 1 1778 0 -chrVIII 234862 236729 HC_gene_3894_tx_4 10 + 234862 236729 . 1 1868 0 -chrVIII 234862 236729 HC_gene_3894_tx_5 1 + 234862 236729 . 2 243,1524 0,344 -chrVIII 234862 236729 HC_gene_3894_tx_6 1 + 234862 236729 . 2 932,866 0,1002 -chrVIII 234862 237746 HC_gene_3894_tx_8 1 + 234862 237746 . 1 2885 0 -chrVIII 235949 236639 HC_gene_3894_tx_9 3 + 235949 236639 . 1 691 0 -chrVIII 235949 236729 HC_gene_3894_tx_10 7 + 235949 236729 . 1 781 0 -chrVIII 235949 237746 HC_gene_3894_tx_11 1 + 235949 237746 . 1 1798 0 -chrVIII 236574 237698 HC_gene_4125_tx_1 1 - 236574 237698 . 1 1125 0 -chrVIII 236649 237746 HC_gene_3894_tx_12 246 + 236649 237746 . 1 1098 0 -chrVIII 236649 237746 HC_gene_3894_tx_13 1 + 236649 237746 . 2 428,624 0,474 -chrVIII 236649 237746 HC_gene_3894_tx_14 1 + 236649 237746 . 2 238,815 0,283 -chrVIII 236649 237746 HC_gene_3894_tx_15 1 + 236649 237746 . 2 53,357 0,741 -chrVIII 236649 237746 HC_gene_3894_tx_16 1 + 236649 237746 . 2 273,775 0,323 -chrVIII 236819 237746 HC_gene_3894_tx_17 48 + 236819 237746 . 1 928 0 -chrVIII 236953 237698 HC_gene_4125_tx_2 1 - 236953 237698 . 1 746 0 -chrVIII 237010 237746 HC_gene_3894_tx_18 7 + 237010 237746 . 1 737 0 -chrVIII 237264 237746 HC_gene_3894_tx_19 23 + 237264 237746 . 1 483 0 -chrVIII 238111 238830 MC_gene_4126_tx_1 1 - 238111 238830 . 1 720 0 -chrVIII 238864 239273 MC_gene_4127_tx_1 1 - 238864 239273 . 1 410 0 -chrVIII 239047 241410 HC_gene_3895_tx_1 35 + 239047 241410 . 1 2364 0 -chrVIII 239047 241410 HC_gene_3895_tx_2 1 + 239047 241410 . 2 1225,1056 0,1308 -chrVIII 239047 241410 HC_gene_3895_tx_3 1 + 239047 241410 . 2 118,1986 0,378 -chrVIII 239180 241410 HC_gene_3895_tx_4 9 + 239180 241410 . 1 2231 0 -chrVIII 239460 241410 HC_gene_3895_tx_5 6 + 239460 241410 . 1 1951 0 -chrVIII 241533 242267 MC_gene_4128_tx_1 1 - 241533 242267 . 1 735 0 -chrVIII 241606 242000 HC_gene_3896_tx_1 1141 + 241606 242000 . 1 395 0 -chrVIII 242551 245653 HC_gene_3897_tx_1 1 + 242551 245653 . 2 1130,1840 0,1263 -chrVIII 242551 245653 HC_gene_3897_tx_2 1 + 242551 245653 . 2 1693,1348 0,1755 -chrVIII 242551 245759 HC_gene_3897_tx_3 14 + 242551 245759 . 1 3209 0 -chrVIII 242551 245759 HC_gene_3897_tx_4 1 + 242551 245759 . 2 2896,254 0,2955 -chrVIII 242673 245653 HC_gene_3897_tx_5 1 + 242673 245653 . 1 2981 0 -chrVIII 242994 245653 HC_gene_3897_tx_6 1 + 242994 245653 . 2 1730,747 0,1913 -chrVIII 243378 245759 HC_gene_3897_tx_7 2 + 243378 245759 . 1 2382 0 -chrVIII 243594 245759 HC_gene_3897_tx_8 2 + 243594 245759 . 1 2166 0 -chrVIII 244155 245653 HC_gene_3897_tx_9 1 + 244155 245653 . 1 1499 0 -chrVIII 244155 245759 HC_gene_3897_tx_10 5 + 244155 245759 . 1 1605 0 -chrVIII 244786 245653 HC_gene_3897_tx_11 1 + 244786 245653 . 1 868 0 -chrVIII 244786 245759 HC_gene_3897_tx_12 6 + 244786 245759 . 1 974 0 -chrVIII 245010 245759 HC_gene_3897_tx_13 3 + 245010 245759 . 1 750 0 -chrVIII 245061 245653 HC_gene_3897_tx_14 3 + 245061 245653 . 1 593 0 -chrVIII 245061 245759 HC_gene_3897_tx_15 3 + 245061 245759 . 1 699 0 -chrVIII 245375 245653 HC_gene_3897_tx_16 2 + 245375 245653 . 1 279 0 -chrVIII 245375 245759 HC_gene_3897_tx_17 16 + 245375 245759 . 1 385 0 -chrVIII 245704 246143 LC_gene_4129_tx_1 1 - 245704 246143 . 1 440 0 -chrVIII 246164 248450 HC_gene_3898_tx_1 31 + 246164 248450 . 1 2287 0 -chrVIII 246300 248450 HC_gene_3898_tx_2 5 + 246300 248450 . 1 2151 0 -chrVIII 246430 248450 HC_gene_3898_tx_3 4 + 246430 248450 . 1 2021 0 -chrVIII 246610 248450 HC_gene_3898_tx_4 2 + 246610 248450 . 1 1841 0 -chrVIII 247834 248450 HC_gene_3898_tx_5 11 + 247834 248450 . 1 617 0 -chrVIII 248369 248754 HC_gene_4130_tx_1 11 - 248369 248754 . 1 386 0 -chrVIII 248369 249685 HC_gene_4130_tx_2 8 - 248369 249685 . 1 1317 0 -chrVIII 249860 250974 HC_gene_4131_tx_1 2 - 249860 250974 . 1 1115 0 -chrVIII 249978 250356 LC_gene_3899_tx_1 1 + 249978 250356 . 1 379 0 -chrVIII 251055 252383 HC_gene_3900_tx_1 15 + 251055 252383 . 1 1329 0 -chrVIII 251055 252383 HC_gene_3900_tx_2 6 + 251055 252383 . 2 101,1135 0,194 -chrVIII 251365 252383 HC_gene_3900_tx_3 3 + 251365 252383 . 1 1019 0 -chrVIII 251953 253003 HC_gene_4132_tx_1 1 - 251953 253003 . 1 1051 0 -chrVIII 252188 253003 HC_gene_4133_tx_1 1 - 252188 253003 . 1 816 0 -chrVIII 252196 253003 HC_gene_4133_tx_2 1 - 252196 253003 . 1 808 0 -chrVIII 252202 253662 HC_gene_4134_tx_1 1 - 252202 253662 . 1 1461 0 -chrVIII 252204 253003 HC_gene_4133_tx_3 1 - 252204 253003 . 1 800 0 -chrVIII 252216 253003 HC_gene_4133_tx_4 1 - 252216 253003 . 1 788 0 -chrVIII 252223 253003 HC_gene_4133_tx_5 1 - 252223 253003 . 1 781 0 -chrVIII 252236 253003 HC_gene_4133_tx_6 1 - 252236 253003 . 1 768 0 -chrVIII 252236 253114 HC_gene_4133_tx_7 1 - 252236 253114 . 2 693,33 0,846 -chrVIII 252236 253382 HC_gene_4133_tx_8 1 - 252236 253382 . 1 1147 0 -chrVIII 252256 253003 HC_gene_4133_tx_9 1 - 252256 253003 . 1 748 0 -chrVIII 252257 253382 HC_gene_4133_tx_10 1 - 252257 253382 . 1 1126 0 -chrVIII 252262 253003 HC_gene_4133_tx_11 1 - 252262 253003 . 1 742 0 -chrVIII 252264 253003 HC_gene_4133_tx_12 3 - 252264 253003 . 1 740 0 -chrVIII 252266 253003 HC_gene_4133_tx_13 2 - 252266 253003 . 1 738 0 -chrVIII 252266 253232 HC_gene_4133_tx_14 1 - 252266 253232 . 1 967 0 -chrVIII 252266 253382 HC_gene_4133_tx_15 1 - 252266 253382 . 1 1117 0 -chrVIII 252266 253662 HC_gene_4134_tx_2 1 - 252266 253662 . 1 1397 0 -chrVIII 252267 253662 HC_gene_4134_tx_3 1 - 252267 253662 . 1 1396 0 -chrVIII 252270 253003 HC_gene_4133_tx_16 1 - 252270 253003 . 1 734 0 -chrVIII 252282 253003 HC_gene_4133_tx_17 1 - 252282 253003 . 1 722 0 -chrVIII 252284 253003 HC_gene_4133_tx_18 1 - 252284 253003 . 1 720 0 -chrVIII 252290 253003 HC_gene_4133_tx_19 1 - 252290 253003 . 1 714 0 -chrVIII 252290 253662 HC_gene_4134_tx_4 1 - 252290 253662 . 1 1373 0 -chrVIII 252291 253003 HC_gene_4133_tx_20 2 - 252291 253003 . 1 713 0 -chrVIII 252291 253382 HC_gene_4133_tx_21 1 - 252291 253382 . 1 1092 0 -chrVIII 252292 253003 HC_gene_4133_tx_22 1 - 252292 253003 . 1 712 0 -chrVIII 252292 253382 HC_gene_4133_tx_23 1 - 252292 253382 . 1 1091 0 -chrVIII 252293 253003 HC_gene_4133_tx_24 1 - 252293 253003 . 1 711 0 -chrVIII 252294 253003 HC_gene_4133_tx_25 1 - 252294 253003 . 1 710 0 -chrVIII 252295 253003 HC_gene_4133_tx_26 1 - 252295 253003 . 1 709 0 -chrVIII 252300 253003 HC_gene_4133_tx_27 1 - 252300 253003 . 1 704 0 -chrVIII 252301 253003 HC_gene_4133_tx_28 1 - 252301 253003 . 1 703 0 -chrVIII 252304 253662 HC_gene_4134_tx_5 1 - 252304 253662 . 1 1359 0 -chrVIII 252306 253003 HC_gene_4133_tx_29 1 - 252306 253003 . 1 698 0 -chrVIII 252314 253662 HC_gene_4134_tx_6 1 - 252314 253662 . 1 1349 0 -chrVIII 252328 253003 HC_gene_4133_tx_30 1 - 252328 253003 . 1 676 0 -chrVIII 253838 255813 HC_gene_4135_tx_1 2 - 253838 255813 . 2 1800,63 0,1913 -chrVIII 255923 256399 HC_gene_4136_tx_1 1 - 255923 256399 . 1 477 0 -chrVIII 256114 258086 HC_gene_3901_tx_1 3 + 256114 258086 . 1 1973 0 -chrVIII 256114 258269 HC_gene_3901_tx_2 1 + 256114 258269 . 1 2156 0 -chrVIII 256332 258086 HC_gene_3901_tx_3 7 + 256332 258086 . 1 1755 0 -chrVIII 256332 258086 HC_gene_3901_tx_4 1 + 256332 258086 . 2 316,1158 0,597 -chrVIII 256332 260280 HC_gene_3901_tx_5 1 + 256332 260280 . 1 3949 0 -chrVIII 256951 258086 HC_gene_3901_tx_6 1 + 256951 258086 . 1 1136 0 -chrVIII 258025 261845 HC_gene_4137_tx_1 1 - 258025 261845 . 1 3821 0 -chrVIII 262076 262549 LC_gene_4138_tx_1 1 - 262076 262549 . 1 474 0 -chrVIII 262726 264990 HC_gene_4139_tx_1 2 - 262726 264990 . 1 2265 0 -chrVIII 262726 266840 HC_gene_4139_tx_2 1 - 262726 266840 . 2 2984,627 0,3488 -chrVIII 262726 267040 HC_gene_4139_tx_3 3 - 262726 267040 . 1 4315 0 -chrVIII 262726 267040 HC_gene_4139_tx_4 1 - 262726 267040 . 2 2013,2173 0,2142 -chrVIII 262791 263302 LC_gene_3902_tx_1 1 + 262791 263302 . 1 512 0 -chrVIII 267249 268213 HC_gene_3903_tx_1 15 + 267249 268213 . 1 965 0 -chrVIII 267249 268319 HC_gene_3903_tx_2 2 + 267249 268319 . 1 1071 0 -chrVIII 267509 268213 HC_gene_3903_tx_3 146 + 267509 268213 . 1 705 0 -chrVIII 267509 268319 HC_gene_3903_tx_4 14 + 267509 268319 . 1 811 0 -chrVIII 267670 268213 HC_gene_3903_tx_5 32 + 267670 268213 . 1 544 0 -chrVIII 267670 268319 HC_gene_3903_tx_6 2 + 267670 268319 . 1 650 0 -chrVIII 267805 268213 HC_gene_3903_tx_7 4 + 267805 268213 . 1 409 0 -chrVIII 267898 268213 HC_gene_3903_tx_8 21 + 267898 268213 . 1 316 0 -chrVIII 267898 268319 HC_gene_3903_tx_9 2 + 267898 268319 . 1 422 0 -chrVIII 268242 269043 HC_gene_4140_tx_1 17 - 268242 269043 . 1 802 0 -chrVIII 268242 269333 HC_gene_4140_tx_2 14 - 268242 269333 . 1 1092 0 -chrVIII 268242 269495 HC_gene_4140_tx_3 9 - 268242 269495 . 1 1254 0 -chrVIII 268242 269649 HC_gene_4140_tx_4 4 - 268242 269649 . 1 1408 0 -chrVIII 268242 269649 HC_gene_4140_tx_5 1 - 268242 269649 . 2 712,232 0,1176 -chrVIII 268242 269939 HC_gene_4140_tx_6 8 - 268242 269939 . 1 1698 0 -chrVIII 268242 269939 HC_gene_4140_tx_7 1 - 268242 269939 . 2 1092,39 0,1659 -chrVIII 268242 270189 HC_gene_4140_tx_8 3 - 268242 270189 . 1 1948 0 -chrVIII 268242 270438 HC_gene_4140_tx_9 3 - 268242 270438 . 1 2197 0 -chrVIII 268242 271890 HC_gene_4140_tx_10 1 - 268242 271890 . 2 2345,1238 0,2411 -chrVIII 268242 271890 HC_gene_4140_tx_11 1 - 268242 271890 . 1 3649 0 -chrVIII 268242 272213 HC_gene_4140_tx_12 1 - 268242 272213 . 2 3112,142 0,3830 -chrVIII 268242 272213 HC_gene_4140_tx_13 1 - 268242 272213 . 1 3972 0 -chrVIII 268242 272413 HC_gene_4140_tx_14 3 - 268242 272413 . 1 4172 0 -chrVIII 272170 272496 HC_gene_3904_tx_1 1 + 272170 272496 . 1 327 0 -chrVIII 272502 273697 HC_gene_3905_tx_1 1 + 272502 273697 . 1 1196 0 -chrVIII 272619 273697 HC_gene_3905_tx_2 82 + 272619 273697 . 1 1079 0 -chrVIII 272619 273697 HC_gene_3905_tx_3 1 + 272619 273697 . 2 116,810 0,269 -chrVIII 272798 273697 HC_gene_3905_tx_4 2 + 272798 273697 . 1 900 0 -chrVIII 272849 273697 HC_gene_3905_tx_5 12 + 272849 273697 . 1 849 0 -chrVIII 272995 273580 LC_gene_4141_tx_1 1 - 272995 273580 . 1 586 0 -chrVIII 273809 274561 LC_gene_4142_tx_1 1 - 273809 274561 . 1 753 0 -chrVIII 273868 276534 HC_gene_3906_tx_1 20 + 273868 276534 . 1 2667 0 -chrVIII 273868 276534 HC_gene_3906_tx_2 1 + 273868 276534 . 2 1685,879 0,1788 -chrVIII 273868 276534 HC_gene_3906_tx_3 1 + 273868 276534 . 2 331,2079 0,588 -chrVIII 276445 277657 MC_gene_4143_tx_1 1 - 276445 277657 . 1 1213 0 -chrVIII 276742 277228 HC_gene_3907_tx_1 1 + 276742 277228 . 1 487 0 -chrVIII 276742 277870 HC_gene_3907_tx_2 61 + 276742 277870 . 1 1129 0 -chrVIII 276742 277870 HC_gene_3907_tx_3 1 + 276742 277870 . 2 242,520 0,609 -chrVIII 276742 278027 HC_gene_3907_tx_4 2 + 276742 278027 . 1 1286 0 -chrVIII 277965 279843 HC_gene_3908_tx_1 1 + 277965 279843 . 1 1879 0 -chrVIII 277965 279854 HC_gene_3908_tx_2 1 + 277965 279854 . 1 1890 0 -chrVIII 277965 279883 HC_gene_3908_tx_3 1 + 277965 279883 . 1 1919 0 -chrVIII 277965 279898 HC_gene_3908_tx_4 1 + 277965 279898 . 1 1934 0 -chrVIII 277965 279900 HC_gene_3908_tx_5 1 + 277965 279900 . 1 1936 0 -chrVIII 277965 279902 HC_gene_3908_tx_6 1 + 277965 279902 . 1 1938 0 -chrVIII 277965 279969 HC_gene_3908_tx_7 1 + 277965 279969 . 1 2005 0 -chrVIII 277965 279974 HC_gene_3908_tx_8 2 + 277965 279974 . 1 2010 0 -chrVIII 277965 279979 HC_gene_3908_tx_9 2 + 277965 279979 . 1 2015 0 -chrVIII 277965 279982 HC_gene_3908_tx_10 1 + 277965 279982 . 1 2018 0 -chrVIII 277965 279985 HC_gene_3908_tx_11 1 + 277965 279985 . 1 2021 0 -chrVIII 277965 279999 HC_gene_3908_tx_12 1 + 277965 279999 . 1 2035 0 -chrVIII 277965 280196 HC_gene_3908_tx_13 18 + 277965 280196 . 1 2232 0 -chrVIII 277965 280196 HC_gene_3908_tx_14 1 + 277965 280196 . 2 657,1346 0,886 -chrVIII 277965 280196 HC_gene_3908_tx_15 1 + 277965 280196 . 2 287,1754 0,478 -chrVIII 278189 279896 HC_gene_3908_tx_16 1 + 278189 279896 . 1 1708 0 -chrVIII 278189 280196 HC_gene_3908_tx_17 3 + 278189 280196 . 1 2008 0 -chrVIII 279353 280105 MC_gene_4144_tx_1 1 - 279353 280105 . 1 753 0 -chrVIII 280469 281340 HC_gene_3909_tx_1 5 + 280469 281340 . 1 872 0 -chrVIII 280744 281340 HC_gene_3909_tx_2 142 + 280744 281340 . 1 597 0 -chrVIII 280851 281340 HC_gene_3909_tx_3 13 + 280851 281340 . 1 490 0 -chrVIII 280991 281340 HC_gene_3909_tx_4 14 + 280991 281340 . 1 350 0 -chrVIII 281467 282477 HC_gene_3910_tx_1 126 + 281467 282477 . 1 1011 0 -chrVIII 281467 282559 HC_gene_3910_tx_2 1 + 281467 282559 . 2 969,46 0,1047 -chrVIII 281467 282664 HC_gene_3910_tx_3 1 + 281467 282664 . 2 231,893 0,305 -chrVIII 281467 282664 HC_gene_3910_tx_4 2 + 281467 282664 . 1 1198 0 -chrVIII 281538 282477 HC_gene_3910_tx_5 3 + 281538 282477 . 1 940 0 -chrVIII 282462 282915 HC_gene_4145_tx_1 130 - 282462 282915 . 1 454 0 -chrVIII 282462 282980 HC_gene_4145_tx_2 106 - 282462 282980 . 1 519 0 -chrVIII 282462 282980 HC_gene_4145_tx_3 1 - 282462 282980 . 2 352,63 0,456 -chrVIII 282462 282980 HC_gene_4145_tx_4 1 - 282462 282980 . 2 352,106 0,413 -chrVIII 282462 283153 HC_gene_4145_tx_5 91 - 282462 283153 . 1 692 0 -chrVIII 282462 283153 HC_gene_4145_tx_6 1 - 282462 283153 . 2 352,297 0,395 -chrVIII 282462 283331 HC_gene_4145_tx_7 650 - 282462 283331 . 1 870 0 -chrVIII 282462 283331 HC_gene_4145_tx_8 1 - 282462 283331 . 2 693,106 0,764 -chrVIII 282462 283331 HC_gene_4145_tx_9 2 - 282462 283331 . 2 325,496 0,374 -chrVIII 282462 283331 HC_gene_4145_tx_10 1 - 282462 283331 . 2 664,109 0,761 -chrVIII 282462 283331 HC_gene_4145_tx_11 1 - 282462 283331 . 2 84,619 0,251 -chrVIII 282462 283331 HC_gene_4145_tx_12 1 - 282462 283331 . 2 84,684 0,186 -chrVIII 282462 283331 HC_gene_4145_tx_13 1 - 282462 283331 . 2 734,58 0,812 -chrVIII 282462 283331 HC_gene_4145_tx_14 1 - 282462 283331 . 2 334,466 0,404 -chrVIII 282462 283331 HC_gene_4145_tx_15 1 - 282462 283331 . 2 364,349 0,521 -chrVIII 282462 283331 HC_gene_4145_tx_16 2 - 282462 283331 . 2 325,475 0,395 -chrVIII 282462 283331 HC_gene_4145_tx_17 1 - 282462 283331 . 2 757,64 0,806 -chrVIII 282462 283331 HC_gene_4145_tx_18 1 - 282462 283331 . 2 325,478 0,392 -chrVIII 282462 283331 HC_gene_4145_tx_19 1 - 282462 283331 . 2 352,414 0,456 -chrVIII 282462 283331 HC_gene_4145_tx_20 1 - 282462 283331 . 2 367,349 0,521 -chrVIII 282462 283331 HC_gene_4145_tx_21 1 - 282462 283331 . 2 132,690 0,180 -chrVIII 282462 283331 HC_gene_4145_tx_22 1 - 282462 283331 . 2 298,349 0,521 -chrVIII 282629 283667 LC_gene_3911_tx_1 1 + 282629 283667 . 1 1039 0 -chrVIII 282633 283331 HC_gene_4145_tx_23 2 - 282633 283331 . 1 699 0 -chrVIII 283527 284634 HC_gene_4146_tx_1 30 - 283527 284634 . 1 1108 0 -chrVIII 284732 286630 HC_gene_4147_tx_1 4 - 284732 286630 . 1 1899 0 -chrVIII 284732 286630 HC_gene_4147_tx_2 1 - 284732 286630 . 2 788,1005 0,894 -chrVIII 284732 286798 HC_gene_4147_tx_3 3 - 284732 286798 . 1 2067 0 -chrVIII 284869 285328 LC_gene_3912_tx_1 1 + 284869 285328 . 1 460 0 -chrVIII 286371 287091 HC_gene_3913_tx_1 2 + 286371 287091 . 1 721 0 -chrVIII 286927 288887 HC_gene_4148_tx_1 1 - 286927 288887 . 1 1961 0 -chrVIII 286934 288887 HC_gene_4148_tx_2 1 - 286934 288887 . 1 1954 0 -chrVIII 286935 288058 HC_gene_4148_tx_115 1 - 286935 288058 . 1 1124 0 -chrVIII 286935 288887 HC_gene_4148_tx_3 1 - 286935 288887 . 1 1953 0 -chrVIII 286936 288887 HC_gene_4148_tx_4 3 - 286936 288887 . 1 1952 0 -chrVIII 286938 288058 HC_gene_4148_tx_116 1 - 286938 288058 . 1 1121 0 -chrVIII 286938 288887 HC_gene_4148_tx_5 1 - 286938 288887 . 1 1950 0 -chrVIII 286940 288887 HC_gene_4148_tx_6 2 - 286940 288887 . 1 1948 0 -chrVIII 286940 288887 HC_gene_4148_tx_7 1 - 286940 288887 . 2 1130,698 0,1250 -chrVIII 286941 288058 HC_gene_4148_tx_117 1 - 286941 288058 . 1 1118 0 -chrVIII 286941 288887 HC_gene_4148_tx_8 1 - 286941 288887 . 1 1947 0 -chrVIII 286942 288058 HC_gene_4148_tx_118 1 - 286942 288058 . 1 1117 0 -chrVIII 286942 288887 HC_gene_4148_tx_9 11 - 286942 288887 . 1 1946 0 -chrVIII 286942 288887 HC_gene_4148_tx_10 1 - 286942 288887 . 2 695,869 0,1077 -chrVIII 286943 288887 HC_gene_4148_tx_11 3 - 286943 288887 . 1 1945 0 -chrVIII 286944 288887 HC_gene_4148_tx_12 2 - 286944 288887 . 1 1944 0 -chrVIII 286945 288058 HC_gene_4148_tx_119 3 - 286945 288058 . 1 1114 0 -chrVIII 286945 288887 HC_gene_4148_tx_13 17 - 286945 288887 . 1 1943 0 -chrVIII 286945 288887 HC_gene_4148_tx_14 1 - 286945 288887 . 2 1355,317 0,1626 -chrVIII 286946 288887 HC_gene_4148_tx_15 1 - 286946 288887 . 1 1942 0 -chrVIII 286948 288887 HC_gene_4148_tx_16 2 - 286948 288887 . 1 1940 0 -chrVIII 286949 288058 HC_gene_4148_tx_120 2 - 286949 288058 . 1 1110 0 -chrVIII 286949 288887 HC_gene_4148_tx_17 4 - 286949 288887 . 1 1939 0 -chrVIII 286950 288058 HC_gene_4148_tx_121 5 - 286950 288058 . 1 1109 0 -chrVIII 286950 288887 HC_gene_4148_tx_18 22 - 286950 288887 . 1 1938 0 -chrVIII 286950 288887 HC_gene_4148_tx_19 1 - 286950 288887 . 2 1535,158 0,1780 -chrVIII 286951 288058 HC_gene_4148_tx_122 2 - 286951 288058 . 1 1108 0 -chrVIII 286951 288887 HC_gene_4148_tx_20 20 - 286951 288887 . 1 1937 0 -chrVIII 286951 288887 HC_gene_4148_tx_21 1 - 286951 288887 . 2 893,956 0,981 -chrVIII 286951 288887 HC_gene_4148_tx_22 1 - 286951 288887 . 2 1066,236 0,1701 -chrVIII 286951 288887 HC_gene_4148_tx_23 1 - 286951 288887 . 2 847,1023 0,914 -chrVIII 286952 288887 HC_gene_4148_tx_24 9 - 286952 288887 . 1 1936 0 -chrVIII 286953 288887 HC_gene_4148_tx_25 1 - 286953 288887 . 1 1935 0 -chrVIII 286954 288887 HC_gene_4148_tx_26 2 - 286954 288887 . 1 1934 0 -chrVIII 286955 288058 HC_gene_4148_tx_123 4 - 286955 288058 . 1 1104 0 -chrVIII 286955 288887 HC_gene_4148_tx_27 69 - 286955 288887 . 1 1933 0 -chrVIII 286955 288887 HC_gene_4148_tx_28 1 - 286955 288887 . 2 531,1355 0,578 -chrVIII 286955 288887 HC_gene_4148_tx_29 1 - 286955 288887 . 2 796,549 0,1384 -chrVIII 286955 288887 HC_gene_4148_tx_30 1 - 286955 288887 . 2 83,1640 0,293 -chrVIII 286955 288887 HC_gene_4148_tx_31 1 - 286955 288887 . 2 372,986 0,947 -chrVIII 286955 288887 HC_gene_4148_tx_32 1 - 286955 288887 . 2 919,276 0,1657 -chrVIII 286956 288887 HC_gene_4148_tx_33 2 - 286956 288887 . 1 1932 0 -chrVIII 286957 288058 HC_gene_4148_tx_124 14 - 286957 288058 . 1 1102 0 -chrVIII 286957 288887 HC_gene_4148_tx_34 110 - 286957 288887 . 1 1931 0 -chrVIII 286957 288887 HC_gene_4148_tx_35 1 - 286957 288887 . 2 931,788 0,1143 -chrVIII 286957 288887 HC_gene_4148_tx_36 1 - 286957 288887 . 2 429,623 0,1308 -chrVIII 286957 288887 HC_gene_4148_tx_37 1 - 286957 288887 . 2 539,1151 0,780 -chrVIII 286957 288887 HC_gene_4148_tx_38 1 - 286957 288887 . 2 837,1010 0,921 -chrVIII 286958 288058 HC_gene_4148_tx_125 2 - 286958 288058 . 1 1101 0 -chrVIII 286958 288887 HC_gene_4148_tx_39 32 - 286958 288887 . 1 1930 0 -chrVIII 286958 288887 HC_gene_4148_tx_40 1 - 286958 288887 . 2 1467,276 0,1654 -chrVIII 286959 288058 HC_gene_4148_tx_126 2 - 286959 288058 . 1 1100 0 -chrVIII 286959 288887 HC_gene_4148_tx_41 29 - 286959 288887 . 1 1929 0 -chrVIII 286959 288887 HC_gene_4148_tx_42 1 - 286959 288887 . 2 258,1569 0,360 -chrVIII 286959 288887 HC_gene_4148_tx_43 1 - 286959 288887 . 2 843,1010 0,919 -chrVIII 286960 288887 HC_gene_4148_tx_44 1 - 286960 288887 . 1 1928 0 -chrVIII 286961 288887 HC_gene_4148_tx_45 3 - 286961 288887 . 1 1927 0 -chrVIII 286962 288887 HC_gene_4148_tx_46 1 - 286962 288887 . 1 1926 0 -chrVIII 286963 288887 HC_gene_4148_tx_47 6 - 286963 288887 . 1 1925 0 -chrVIII 286964 288058 HC_gene_4148_tx_127 1 - 286964 288058 . 1 1095 0 -chrVIII 286964 288887 HC_gene_4148_tx_48 5 - 286964 288887 . 1 1924 0 -chrVIII 286965 288058 HC_gene_4148_tx_128 1 - 286965 288058 . 1 1094 0 -chrVIII 286965 288887 HC_gene_4148_tx_49 2 - 286965 288887 . 1 1923 0 -chrVIII 286965 288887 HC_gene_4148_tx_50 1 - 286965 288887 . 2 1356,410 0,1513 -chrVIII 286966 288058 HC_gene_4148_tx_129 3 - 286966 288058 . 1 1093 0 -chrVIII 286966 288887 HC_gene_4148_tx_51 26 - 286966 288887 . 1 1922 0 -chrVIII 286967 288887 HC_gene_4148_tx_52 6 - 286967 288887 . 1 1921 0 -chrVIII 286968 288058 HC_gene_4148_tx_130 3 - 286968 288058 . 1 1091 0 -chrVIII 286968 288887 HC_gene_4148_tx_53 15 - 286968 288887 . 1 1920 0 -chrVIII 286969 288058 HC_gene_4148_tx_131 7 - 286969 288058 . 1 1090 0 -chrVIII 286969 288887 HC_gene_4148_tx_54 56 - 286969 288887 . 1 1919 0 -chrVIII 286969 288887 HC_gene_4148_tx_55 1 - 286969 288887 . 2 901,470 0,1449 -chrVIII 286969 288887 HC_gene_4148_tx_56 1 - 286969 288887 . 2 977,767 0,1152 -chrVIII 286969 288887 HC_gene_4148_tx_57 1 - 286969 288887 . 2 1500,270 0,1649 -chrVIII 286969 288887 HC_gene_4148_tx_58 1 - 286969 288887 . 2 1143,371 0,1548 -chrVIII 286970 288058 HC_gene_4148_tx_132 4 - 286970 288058 . 1 1089 0 -chrVIII 286970 288887 HC_gene_4148_tx_59 7 - 286970 288887 . 1 1918 0 -chrVIII 286970 288887 HC_gene_4148_tx_60 1 - 286970 288887 . 2 597,503 0,1415 -chrVIII 286971 288887 HC_gene_4148_tx_61 5 - 286971 288887 . 1 1917 0 -chrVIII 286971 288887 HC_gene_4148_tx_62 1 - 286971 288887 . 2 259,1043 0,874 -chrVIII 286972 288058 HC_gene_4148_tx_133 1 - 286972 288058 . 1 1087 0 -chrVIII 286972 288887 HC_gene_4148_tx_63 2 - 286972 288887 . 1 1916 0 -chrVIII 286973 288887 HC_gene_4148_tx_64 3 - 286973 288887 . 1 1915 0 -chrVIII 286975 288887 HC_gene_4148_tx_65 10 - 286975 288887 . 1 1913 0 -chrVIII 286976 288058 HC_gene_4148_tx_134 2 - 286976 288058 . 1 1083 0 -chrVIII 286976 288887 HC_gene_4148_tx_66 6 - 286976 288887 . 1 1912 0 -chrVIII 286976 288887 HC_gene_4148_tx_67 1 - 286976 288887 . 2 1463,392 0,1520 -chrVIII 286977 288058 HC_gene_4148_tx_135 1 - 286977 288058 . 1 1082 0 -chrVIII 286977 288887 HC_gene_4148_tx_68 5 - 286977 288887 . 1 1911 0 -chrVIII 286978 288058 HC_gene_4148_tx_136 1 - 286978 288058 . 1 1081 0 -chrVIII 286978 288887 HC_gene_4148_tx_69 8 - 286978 288887 . 1 1910 0 -chrVIII 286979 288058 HC_gene_4148_tx_137 2 - 286979 288058 . 1 1080 0 -chrVIII 286979 288887 HC_gene_4148_tx_70 1 - 286979 288887 . 1 1909 0 -chrVIII 286980 288887 HC_gene_4148_tx_71 2 - 286980 288887 . 1 1908 0 -chrVIII 286981 288887 HC_gene_4148_tx_72 3 - 286981 288887 . 1 1907 0 -chrVIII 286982 288058 HC_gene_4148_tx_138 2 - 286982 288058 . 1 1077 0 -chrVIII 286982 288887 HC_gene_4148_tx_73 10 - 286982 288887 . 1 1906 0 -chrVIII 286982 288887 HC_gene_4148_tx_74 1 - 286982 288887 . 2 1152,623 0,1283 -chrVIII 286983 288058 HC_gene_4148_tx_139 2 - 286983 288058 . 1 1076 0 -chrVIII 286983 288887 HC_gene_4148_tx_75 10 - 286983 288887 . 1 1905 0 -chrVIII 286983 288887 HC_gene_4148_tx_76 1 - 286983 288887 . 2 627,191 0,1714 -chrVIII 286983 288887 HC_gene_4148_tx_77 1 - 286983 288887 . 2 1217,482 0,1423 -chrVIII 286984 288058 HC_gene_4148_tx_140 1 - 286984 288058 . 1 1075 0 -chrVIII 286984 288887 HC_gene_4148_tx_78 3 - 286984 288887 . 1 1904 0 -chrVIII 286985 288058 HC_gene_4148_tx_141 1 - 286985 288058 . 1 1074 0 -chrVIII 286985 288887 HC_gene_4148_tx_79 5 - 286985 288887 . 1 1903 0 -chrVIII 286986 288058 HC_gene_4148_tx_142 1 - 286986 288058 . 1 1073 0 -chrVIII 286986 288887 HC_gene_4148_tx_80 4 - 286986 288887 . 1 1902 0 -chrVIII 286987 288058 HC_gene_4148_tx_143 1 - 286987 288058 . 1 1072 0 -chrVIII 286987 288887 HC_gene_4148_tx_81 3 - 286987 288887 . 1 1901 0 -chrVIII 286988 288058 HC_gene_4148_tx_144 1 - 286988 288058 . 1 1071 0 -chrVIII 286988 288887 HC_gene_4148_tx_82 13 - 286988 288887 . 1 1900 0 -chrVIII 286989 288887 HC_gene_4148_tx_83 1 - 286989 288887 . 1 1899 0 -chrVIII 286990 288887 HC_gene_4148_tx_84 2 - 286990 288887 . 1 1898 0 -chrVIII 286992 288058 HC_gene_4148_tx_145 2 - 286992 288058 . 1 1067 0 -chrVIII 286992 288887 HC_gene_4148_tx_85 2 - 286992 288887 . 1 1896 0 -chrVIII 286993 288887 HC_gene_4148_tx_86 1 - 286993 288887 . 1 1895 0 -chrVIII 286994 288887 HC_gene_4148_tx_87 1 - 286994 288887 . 1 1894 0 -chrVIII 286995 288058 HC_gene_4148_tx_146 2 - 286995 288058 . 1 1064 0 -chrVIII 286995 288887 HC_gene_4148_tx_88 3 - 286995 288887 . 1 1893 0 -chrVIII 286996 288887 HC_gene_4148_tx_89 2 - 286996 288887 . 1 1892 0 -chrVIII 286997 288058 HC_gene_4148_tx_147 1 - 286997 288058 . 1 1062 0 -chrVIII 286997 288887 HC_gene_4148_tx_90 10 - 286997 288887 . 1 1891 0 -chrVIII 286997 288887 HC_gene_4148_tx_91 1 - 286997 288887 . 2 881,755 0,1136 -chrVIII 286998 288058 HC_gene_4148_tx_148 2 - 286998 288058 . 1 1061 0 -chrVIII 286998 288887 HC_gene_4148_tx_92 4 - 286998 288887 . 1 1890 0 -chrVIII 286999 288058 HC_gene_4148_tx_149 1 - 286999 288058 . 1 1060 0 -chrVIII 286999 288887 HC_gene_4148_tx_93 3 - 286999 288887 . 1 1889 0 -chrVIII 287000 288887 HC_gene_4148_tx_94 3 - 287000 288887 . 1 1888 0 -chrVIII 287001 288887 HC_gene_4148_tx_95 1 - 287001 288887 . 2 331,1329 0,558 -chrVIII 287001 288887 HC_gene_4148_tx_96 1 - 287001 288887 . 1 1887 0 -chrVIII 287002 288058 HC_gene_4148_tx_150 1 - 287002 288058 . 1 1057 0 -chrVIII 287002 288887 HC_gene_4148_tx_97 1 - 287002 288887 . 1 1886 0 -chrVIII 287003 288887 HC_gene_4148_tx_98 9 - 287003 288887 . 1 1885 0 -chrVIII 287004 288058 HC_gene_4148_tx_151 1 - 287004 288058 . 1 1055 0 -chrVIII 287004 288887 HC_gene_4148_tx_99 1 - 287004 288887 . 1 1884 0 -chrVIII 287005 288887 HC_gene_4148_tx_100 2 - 287005 288887 . 1 1883 0 -chrVIII 287007 288887 HC_gene_4148_tx_101 2 - 287007 288887 . 1 1881 0 -chrVIII 287008 288058 HC_gene_4148_tx_152 1 - 287008 288058 . 1 1051 0 -chrVIII 287009 288887 HC_gene_4148_tx_102 3 - 287009 288887 . 1 1879 0 -chrVIII 287010 288887 HC_gene_4148_tx_103 2 - 287010 288887 . 1 1878 0 -chrVIII 287011 288058 HC_gene_4148_tx_153 1 - 287011 288058 . 1 1048 0 -chrVIII 287011 288887 HC_gene_4148_tx_104 2 - 287011 288887 . 1 1877 0 -chrVIII 287012 288887 HC_gene_4148_tx_105 2 - 287012 288887 . 1 1876 0 -chrVIII 287014 288058 HC_gene_4148_tx_154 1 - 287014 288058 . 1 1045 0 -chrVIII 287014 288887 HC_gene_4148_tx_106 5 - 287014 288887 . 1 1874 0 -chrVIII 287014 288887 HC_gene_4148_tx_107 1 - 287014 288887 . 2 1008,594 0,1280 -chrVIII 287015 288058 HC_gene_4148_tx_155 1 - 287015 288058 . 1 1044 0 -chrVIII 287017 288058 HC_gene_4148_tx_156 2 - 287017 288058 . 1 1042 0 -chrVIII 287017 288887 HC_gene_4148_tx_108 20 - 287017 288887 . 1 1871 0 -chrVIII 287018 288887 HC_gene_4148_tx_109 1 - 287018 288887 . 1 1870 0 -chrVIII 287019 288058 HC_gene_4148_tx_157 3 - 287019 288058 . 1 1040 0 -chrVIII 287019 288887 HC_gene_4148_tx_110 24 - 287019 288887 . 1 1869 0 -chrVIII 287019 288887 HC_gene_4148_tx_111 1 - 287019 288887 . 2 1527,243 0,1626 -chrVIII 287020 288058 HC_gene_4148_tx_158 1 - 287020 288058 . 1 1039 0 -chrVIII 287020 288887 HC_gene_4148_tx_112 11 - 287020 288887 . 1 1868 0 -chrVIII 287021 288058 HC_gene_4148_tx_159 4 - 287021 288058 . 1 1038 0 -chrVIII 287021 288058 HC_gene_4148_tx_160 1 - 287021 288058 . 2 610,369 0,669 -chrVIII 287021 288887 HC_gene_4148_tx_113 31 - 287021 288887 . 1 1867 0 -chrVIII 287021 288887 HC_gene_4148_tx_114 1 - 287021 288887 . 2 255,1515 0,352 -chrVIII 287164 288980 LC_gene_3914_tx_1 1 + 287164 288980 . 1 1817 0 -chrVIII 288918 289627 HC_gene_4149_tx_1 2 - 288918 289627 . 1 710 0 -chrVIII 290155 290876 LC_gene_3915_tx_1 1 + 290155 290876 . 1 722 0 -chrVIII 290782 291449 HC_gene_4150_tx_1 10 - 290782 291449 . 1 668 0 -chrVIII 290782 291691 HC_gene_4150_tx_2 8 - 290782 291691 . 1 910 0 -chrVIII 290782 291872 HC_gene_4150_tx_3 11 - 290782 291872 . 1 1091 0 -chrVIII 290782 292667 HC_gene_4150_tx_4 54 - 290782 292667 . 1 1886 0 -chrVIII 290782 292667 HC_gene_4150_tx_5 1 - 290782 292667 . 2 106,750 0,1136 -chrVIII 290782 292667 HC_gene_4150_tx_6 1 - 290782 292667 . 2 870,964 0,922 -chrVIII 290782 292667 HC_gene_4150_tx_7 1 - 290782 292667 . 3 516,968,133 0,628,1753 -chrVIII 290782 292667 HC_gene_4150_tx_8 1 - 290782 292667 . 2 1117,358 0,1528 -chrVIII 290782 292667 HC_gene_4150_tx_9 1 - 290782 292667 . 2 488,871 0,1015 -chrVIII 290782 292667 HC_gene_4150_tx_10 1 - 290782 292667 . 2 612,1141 0,745 -chrVIII 292604 292894 HC_gene_4151_tx_1 2 - 292604 292894 . 1 291 0 -chrVIII 293952 294514 HC_gene_3916_tx_1 1 + 293952 294514 . 1 563 0 -chrVIII 293954 294514 HC_gene_3916_tx_2 1 + 293954 294514 . 1 561 0 -chrVIII 293965 294513 HC_gene_3916_tx_3 1 + 293965 294513 . 1 549 0 -chrVIII 293975 296508 HC_gene_3916_tx_5 1 + 293975 296508 . 1 2534 0 -chrVIII 293975 296598 HC_gene_3916_tx_6 2 + 293975 296598 . 1 2624 0 -chrVIII 293975 296649 HC_gene_3916_tx_7 1 + 293975 296649 . 1 2675 0 -chrVIII 293977 294514 HC_gene_3916_tx_4 1 + 293977 294514 . 1 538 0 -chrVIII 294313 294514 HC_gene_3916_tx_12 1 + 294313 294514 . 1 202 0 -chrVIII 294421 296508 HC_gene_3916_tx_8 2 + 294421 296508 . 1 2088 0 -chrVIII 294496 296508 HC_gene_3916_tx_9 1 + 294496 296508 . 2 473,1340 0,673 -chrVIII 294496 296598 HC_gene_3916_tx_10 1 + 294496 296598 . 1 2103 0 -chrVIII 294573 296787 MC_gene_4152_tx_1 1 - 294573 296787 . 1 2215 0 -chrVIII 294616 296598 HC_gene_3916_tx_11 1 + 294616 296598 . 1 1983 0 -chrVIII 296836 297346 MC_gene_3917_tx_1 1 + 296836 297346 . 1 511 0 -chrVIII 297259 297722 HC_gene_4153_tx_1 11 - 297259 297722 . 1 464 0 -chrVIII 297259 297947 HC_gene_4153_tx_2 10 - 297259 297947 . 1 689 0 -chrVIII 297259 298056 HC_gene_4153_tx_3 9 - 297259 298056 . 1 798 0 -chrVIII 297259 298152 HC_gene_4153_tx_4 5 - 297259 298152 . 1 894 0 -chrVIII 297259 298261 HC_gene_4153_tx_5 9 - 297259 298261 . 1 1003 0 -chrVIII 297259 298384 HC_gene_4153_tx_6 6 - 297259 298384 . 1 1126 0 -chrVIII 297259 298627 HC_gene_4153_tx_7 48 - 297259 298627 . 2 1102,143 0,1226 -chrVIII 297259 298627 HC_gene_4153_tx_8 9 - 297259 298627 . 1 1369 0 -chrVIII 297259 298627 HC_gene_4153_tx_9 2 - 297259 298627 . 2 1102,147 0,1222 -chrVIII 298145 299026 LC_gene_3918_tx_1 1 + 298145 299026 . 1 882 0 -chrVIII 299002 301628 HC_gene_4154_tx_1 4 - 299002 301628 . 1 2627 0 -chrVIII 299002 301911 HC_gene_4154_tx_2 3 - 299002 301911 . 1 2910 0 -chrVIII 299002 301911 HC_gene_4154_tx_3 1 - 299002 301911 . 2 718,1148 0,1762 -chrVIII 299002 302010 HC_gene_4154_tx_4 20 - 299002 302010 . 1 3009 0 -chrVIII 299002 302010 HC_gene_4154_tx_5 1 - 299002 302010 . 2 1559,1388 0,1621 -chrVIII 302251 302615 MC_gene_3919_tx_1 1 + 302251 302615 . 1 365 0 -chrVIII 302665 303243 HC_gene_3920_tx_1 1 + 302665 303243 . 1 579 0 -chrVIII 305018 305280 HC_gene_3921_tx_1 1 + 305018 305280 . 1 263 0 -chrVIII 310441 314115 HC_gene_3922_tx_1 1 + 310441 314115 . 1 3675 0 -chrVIII 312331 314115 HC_gene_3922_tx_2 2 + 312331 314115 . 1 1785 0 -chrVIII 313546 314115 HC_gene_3922_tx_3 8 + 313546 314115 . 1 570 0 -chrVIII 313617 314115 HC_gene_3922_tx_4 2 + 313617 314115 . 1 499 0 -chrVIII 313856 314720 HC_gene_4155_tx_1 7 - 313856 314720 . 1 865 0 -chrVIII 313990 314720 HC_gene_4155_tx_2 15 - 313990 314720 . 1 731 0 -chrVIII 313990 314720 HC_gene_4155_tx_3 1 - 313990 314720 . 2 88,560 0,171 -chrVIII 314077 314720 HC_gene_4155_tx_4 4 - 314077 314720 . 1 644 0 -chrVIII 314078 314720 HC_gene_4155_tx_5 6 - 314078 314720 . 1 643 0 -chrVIII 314082 314720 HC_gene_4155_tx_6 1 - 314082 314720 . 1 639 0 -chrVIII 314085 314720 HC_gene_4155_tx_7 1 - 314085 314720 . 1 636 0 -chrVIII 314089 314720 HC_gene_4155_tx_8 1 - 314089 314720 . 1 632 0 -chrVIII 314090 314720 HC_gene_4155_tx_9 1 - 314090 314720 . 1 631 0 -chrVIII 314114 314720 HC_gene_4155_tx_10 1 - 314114 314720 . 1 607 0 -chrVIII 314303 314798 HC_gene_3923_tx_1 7 + 314303 314798 . 1 496 0 -chrVIII 314303 314903 HC_gene_3923_tx_2 1 + 314303 314903 . 1 601 0 -chrVIII 314630 316001 HC_gene_4156_tx_1 17 - 314630 316001 . 2 1142,143 0,1229 -chrVIII 314630 316001 HC_gene_4156_tx_2 1 - 314630 316001 . 1 1372 0 -chrVIII 314934 315828 MC_gene_3924_tx_1 1 + 314934 315828 . 1 895 0 -chrVIII 315073 315634 MC_gene_3924_tx_2 1 + 315073 315634 . 1 562 0 -chrVIII 315092 315703 MC_gene_3924_tx_3 1 + 315092 315703 . 1 612 0 -chrVIII 316387 317214 HC_gene_3925_tx_1 1 + 316387 317214 . 1 828 0 -chrVIII 316387 317214 HC_gene_3925_tx_2 1 + 316387 317214 . 2 319,283 0,545 -chrVIII 317374 319831 MC_gene_4157_tx_1 1 - 317374 319831 . 1 2458 0 -chrVIII 319257 319937 HC_gene_3926_tx_1 5 + 319257 319937 . 1 681 0 -chrVIII 320238 323135 HC_gene_3927_tx_1 12 + 320238 323135 . 1 2898 0 -chrVIII 320238 323135 HC_gene_3927_tx_2 1 + 320238 323135 . 3 921,325,1530 0,982,1368 -chrVIII 320421 323135 HC_gene_3927_tx_3 2 + 320421 323135 . 1 2715 0 -chrVIII 320844 323135 HC_gene_3927_tx_4 2 + 320844 323135 . 1 2292 0 -chrVIII 321895 323135 HC_gene_3927_tx_5 7 + 321895 323135 . 1 1241 0 -chrVIII 323370 324581 HC_gene_3928_tx_1 102 + 323370 324581 . 1 1212 0 -chrVIII 323605 324581 HC_gene_3928_tx_2 11 + 323605 324581 . 1 977 0 -chrVIII 323710 324581 HC_gene_3928_tx_3 19 + 323710 324581 . 1 872 0 -chrVIII 323817 324581 HC_gene_3928_tx_4 12 + 323817 324581 . 1 765 0 -chrVIII 324664 326785 HC_gene_3929_tx_1 2 + 324664 326785 . 1 2122 0 -chrVIII 324664 326785 HC_gene_3929_tx_2 1 + 324664 326785 . 2 293,1370 0,752 -chrVIII 324664 326842 HC_gene_3929_tx_3 1 + 324664 326842 . 1 2179 0 -chrVIII 325596 326785 HC_gene_3929_tx_4 35 + 325596 326785 . 1 1190 0 -chrVIII 325596 326785 HC_gene_3929_tx_5 1 + 325596 326785 . 2 639,476 0,714 -chrVIII 325596 326785 HC_gene_3929_tx_6 1 + 325596 326785 . 2 1013,128 0,1062 -chrVIII 325596 326785 HC_gene_3929_tx_7 1 + 325596 326785 . 2 427,177 0,1013 -chrVIII 325596 326785 HC_gene_3929_tx_8 1 + 325596 326785 . 3 390,171,93 0,877,1097 -chrVIII 325596 326842 HC_gene_3929_tx_9 2 + 325596 326842 . 1 1247 0 -chrVIII 326629 327075 HC_gene_4158_tx_1 17 - 326629 327075 . 1 447 0 -chrVIII 326629 327272 HC_gene_4158_tx_2 15 - 326629 327272 . 1 644 0 -chrVIII 326629 327907 HC_gene_4158_tx_3 16 - 326629 327907 . 1 1279 0 -chrVIII 326629 327907 HC_gene_4158_tx_4 1 - 326629 327907 . 2 106,1109 0,170 -chrVIII 326629 328095 HC_gene_4158_tx_5 61 - 326629 328095 . 1 1467 0 -chrVIII 326629 328095 HC_gene_4158_tx_6 1 - 326629 328095 . 2 102,1326 0,141 -chrVIII 326629 328095 HC_gene_4158_tx_7 1 - 326629 328095 . 2 112,1295 0,172 -chrVIII 328271 330097 HC_gene_3930_tx_1 4 + 328271 330097 . 1 1827 0 -chrVIII 328271 330097 HC_gene_3930_tx_2 1 + 328271 330097 . 2 817,450 0,1377 -chrVIII 328271 330177 HC_gene_3930_tx_3 87 + 328271 330177 . 1 1907 0 -chrVIII 328271 330177 HC_gene_3930_tx_4 1 + 328271 330177 . 2 1008,822 0,1085 -chrVIII 328271 330177 HC_gene_3930_tx_5 1 + 328271 330177 . 2 1101,743 0,1164 -chrVIII 328271 330177 HC_gene_3930_tx_6 1 + 328271 330177 . 2 869,950 0,957 -chrVIII 328271 330177 HC_gene_3930_tx_7 1 + 328271 330177 . 2 1230,617 0,1290 -chrVIII 328271 330177 HC_gene_3930_tx_8 1 + 328271 330177 . 2 1059,788 0,1119 -chrVIII 328271 330177 HC_gene_3930_tx_9 1 + 328271 330177 . 2 213,1656 0,251 -chrVIII 328271 330177 HC_gene_3930_tx_10 1 + 328271 330177 . 2 827,769 0,1138 -chrVIII 328747 330177 HC_gene_3930_tx_11 4 + 328747 330177 . 1 1431 0 -chrVIII 328956 330102 LC_gene_4159_tx_1 1 - 328956 330102 . 1 1147 0 -chrVIII 329455 330177 HC_gene_3930_tx_12 1 + 329455 330177 . 1 723 0 -chrVIII 329464 330097 HC_gene_3930_tx_13 1 + 329464 330097 . 1 634 0 -chrVIII 329464 330177 HC_gene_3930_tx_14 21 + 329464 330177 . 1 714 0 -chrVIII 329528 330097 HC_gene_3930_tx_15 3 + 329528 330097 . 1 570 0 -chrVIII 329528 330177 HC_gene_3930_tx_16 31 + 329528 330177 . 1 650 0 -chrVIII 329660 330097 HC_gene_3930_tx_17 1 + 329660 330097 . 1 438 0 -chrVIII 329660 330177 HC_gene_3930_tx_18 33 + 329660 330177 . 1 518 0 -chrVIII 330284 332160 HC_gene_3931_tx_1 4 + 330284 332160 . 1 1877 0 -chrVIII 332263 333030 HC_gene_3932_tx_1 119 + 332263 333030 . 1 768 0 -chrVIII 332271 333030 HC_gene_3932_tx_2 1 + 332271 333030 . 1 760 0 -chrVIII 332279 333030 HC_gene_3932_tx_3 1 + 332279 333030 . 1 752 0 -chrVIII 332280 333030 HC_gene_3932_tx_4 1 + 332280 333030 . 1 751 0 -chrVIII 332292 333030 HC_gene_3932_tx_5 1 + 332292 333030 . 1 739 0 -chrVIII 332420 333030 HC_gene_3932_tx_6 17 + 332420 333030 . 1 611 0 -chrVIII 332558 332873 MC_gene_4160_tx_1 1 - 332558 332873 . 1 316 0 -chrVIII 333057 334441 HC_gene_3933_tx_1 17 + 333057 334441 . 1 1385 0 -chrVIII 333057 336080 HC_gene_3933_tx_2 1 + 333057 336080 . 1 3024 0 -chrVIII 333057 336099 HC_gene_3933_tx_3 1 + 333057 336099 . 1 3043 0 -chrVIII 333057 336109 HC_gene_3933_tx_4 1 + 333057 336109 . 1 3053 0 -chrVIII 333507 335904 HC_gene_4161_tx_1 1 - 333507 335904 . 1 2398 0 -chrVIII 334229 334771 HC_gene_4161_tx_2 3 - 334229 334771 . 1 543 0 -chrVIII 334229 335696 HC_gene_4161_tx_4 1 - 334229 335696 . 1 1468 0 -chrVIII 334325 334771 HC_gene_4161_tx_3 14 - 334325 334771 . 1 447 0 -chrVIII 334325 335612 HC_gene_4161_tx_5 1 - 334325 335612 . 1 1288 0 -chrVIII 334325 335696 HC_gene_4161_tx_6 32 - 334325 335696 . 1 1372 0 -chrVIII 335823 337709 LC_gene_4162_tx_1 1 - 335823 337709 . 1 1887 0 -chrVIII 336131 337906 HC_gene_3934_tx_1 2 + 336131 337906 . 1 1776 0 -chrVIII 336353 337906 HC_gene_3934_tx_2 46 + 336353 337906 . 1 1554 0 -chrVIII 336353 337906 HC_gene_3934_tx_3 1 + 336353 337906 . 2 97,1273 0,281 -chrVIII 336695 337906 HC_gene_3934_tx_4 6 + 336695 337906 . 1 1212 0 -chrVIII 336866 337906 HC_gene_3934_tx_5 7 + 336866 337906 . 1 1041 0 -chrVIII 336973 337906 HC_gene_3934_tx_6 6 + 336973 337906 . 1 934 0 -chrVIII 336973 337906 HC_gene_3934_tx_7 1 + 336973 337906 . 2 842,38 0,896 -chrVIII 337340 337906 HC_gene_3934_tx_8 7 + 337340 337906 . 1 567 0 -chrVIII 338018 340125 HC_gene_3935_tx_1 15 + 338018 340125 . 1 2108 0 -chrVIII 338270 340125 HC_gene_3935_tx_2 2 + 338270 340125 . 1 1856 0 -chrVIII 338440 340125 HC_gene_3935_tx_3 5 + 338440 340125 . 1 1686 0 -chrVIII 339144 340434 HC_gene_4163_tx_1 1 - 339144 340434 . 1 1291 0 -chrVIII 339750 340125 HC_gene_3935_tx_4 16 + 339750 340125 . 1 376 0 -chrVIII 339994 340434 HC_gene_4163_tx_2 7 - 339994 340434 . 1 441 0 -chrVIII 339994 341541 HC_gene_4163_tx_3 42 - 339994 341541 . 1 1548 0 -chrVIII 341718 342359 HC_gene_3936_tx_1 33 + 341718 342359 . 1 642 0 -chrVIII 341733 342359 HC_gene_3936_tx_2 1 + 341733 342359 . 1 627 0 -chrVIII 341819 342359 HC_gene_3936_tx_3 3 + 341819 342359 . 1 541 0 -chrVIII 341988 342359 HC_gene_3936_tx_4 5 + 341988 342359 . 1 372 0 -chrVIII 342316 344345 HC_gene_3937_tx_1 24 + 342316 344345 . 1 2030 0 -chrVIII 342316 344345 HC_gene_3937_tx_2 1 + 342316 344345 . 2 594,1319 0,711 -chrVIII 342316 344486 HC_gene_3937_tx_3 8 + 342316 344486 . 1 2171 0 -chrVIII 342545 344345 HC_gene_3937_tx_4 6 + 342545 344345 . 1 1801 0 -chrVIII 342545 344486 HC_gene_3937_tx_5 2 + 342545 344486 . 1 1942 0 -chrVIII 342644 344345 HC_gene_3937_tx_6 1 + 342644 344345 . 1 1702 0 -chrVIII 343829 344345 HC_gene_3937_tx_7 8 + 343829 344345 . 1 517 0 -chrVIII 343829 344486 HC_gene_3937_tx_8 4 + 343829 344486 . 1 658 0 -chrVIII 344264 345657 HC_gene_4164_tx_1 19 - 344264 345657 . 1 1394 0 -chrVIII 344264 345657 HC_gene_4164_tx_2 1 - 344264 345657 . 2 482,834 0,560 -chrVIII 345995 348881 MC_gene_3938_tx_1 1 + 345995 348881 . 1 2887 0 -chrVIII 347831 349352 MC_gene_4165_tx_1 1 - 347831 349352 . 1 1522 0 -chrVIII 348894 349427 HC_gene_3939_tx_1 8 + 348894 349427 . 1 534 0 -chrVIII 349296 349632 MC_gene_4166_tx_1 1 - 349296 349632 . 1 337 0 -chrVIII 349569 352516 HC_gene_3940_tx_1 1 + 349569 352516 . 2 1930,972 0,1976 -chrVIII 349569 352516 HC_gene_3940_tx_2 3 + 349569 352516 . 1 2948 0 -chrVIII 349752 352516 HC_gene_3940_tx_3 1 + 349752 352516 . 1 2765 0 -chrVIII 351830 352401 LC_gene_4167_tx_1 1 - 351830 352401 . 1 572 0 -chrVIII 352688 353418 HC_gene_3941_tx_1 156 + 352688 353418 . 1 731 0 -chrVIII 352814 353418 HC_gene_3941_tx_2 18 + 352814 353418 . 1 605 0 -chrVIII 353002 353367 MC_gene_4168_tx_1 1 - 353002 353367 . 1 366 0 -chrVIII 353590 354478 HC_gene_3942_tx_1 60 + 353590 354478 . 1 889 0 -chrVIII 353590 354478 HC_gene_3942_tx_2 1 + 353590 354478 . 2 744,47 0,842 -chrVIII 353590 354605 HC_gene_3942_tx_3 15 + 353590 354605 . 1 1016 0 -chrVIII 354139 354584 MC_gene_4169_tx_1 1 - 354139 354584 . 1 446 0 -chrVIII 354799 356274 HC_gene_3943_tx_1 13 + 354799 356274 . 2 66,1319 0,157 -chrVIII 354799 356274 HC_gene_3943_tx_2 1 + 354799 356274 . 2 70,1300 0,176 -chrVIII 354799 356274 HC_gene_3943_tx_3 2 + 354799 356274 . 1 1476 0 -chrVIII 356455 357868 HC_gene_4170_tx_1 1 - 356455 357868 . 1 1414 0 -chrVIII 356455 357946 HC_gene_4170_tx_2 1 - 356455 357946 . 1 1492 0 -chrVIII 356455 358063 HC_gene_4170_tx_3 1 - 356455 358063 . 1 1609 0 -chrVIII 356455 358063 HC_gene_4170_tx_4 1 - 356455 358063 . 2 429,1006 0,603 -chrVIII 356455 358120 HC_gene_4170_tx_5 7 - 356455 358120 . 1 1666 0 -chrVIII 356455 358120 HC_gene_4170_tx_6 1 - 356455 358120 . 2 884,410 0,1256 -chrVIII 358095 358492 HC_gene_3944_tx_1 5 + 358095 358492 . 1 398 0 -chrVIII 358397 358566 MC_gene_4171_tx_1 1 - 358397 358566 . 1 170 0 -chrVIII 358699 359589 LC_gene_4172_tx_1 1 - 358699 359589 . 1 891 0 -chrVIII 360798 361368 MC_gene_4173_tx_1 1 - 360798 361368 . 1 571 0 -chrVIII 360885 361870 HC_gene_3945_tx_1 77 + 360885 361870 . 1 986 0 -chrVIII 360885 362096 HC_gene_3945_tx_2 1 + 360885 362096 . 1 1212 0 -chrVIII 362003 364234 HC_gene_4174_tx_1 1 - 362003 364234 . 1 2232 0 -chrVIII 362071 362864 HC_gene_3946_tx_1 65 + 362071 362864 . 1 794 0 -chrVIII 362071 363001 HC_gene_3946_tx_2 410 + 362071 363001 . 1 931 0 -chrVIII 362355 362864 HC_gene_3946_tx_3 4 + 362355 362864 . 1 510 0 -chrVIII 362355 363001 HC_gene_3946_tx_4 62 + 362355 363001 . 1 647 0 -chrVIII 362451 363001 HC_gene_3946_tx_5 28 + 362451 363001 . 1 551 0 -chrVIII 362636 363001 HC_gene_3946_tx_6 38 + 362636 363001 . 1 366 0 -chrVIII 362898 364234 HC_gene_4174_tx_2 14 - 362898 364234 . 1 1337 0 -chrVIII 362898 364234 HC_gene_4174_tx_3 1 - 362898 364234 . 2 1186,101 0,1236 -chrVIII 362974 364234 HC_gene_4174_tx_4 9 - 362974 364234 . 1 1261 0 -chrVIII 364496 364925 HC_gene_3947_tx_1 6 + 364496 364925 . 1 430 0 -chrVIII 364496 364981 HC_gene_3947_tx_2 7 + 364496 364981 . 1 486 0 -chrVIII 364496 365074 HC_gene_3947_tx_3 1 + 364496 365074 . 1 579 0 -chrVIII 364842 367961 HC_gene_4175_tx_1 2 - 364842 367961 . 1 3120 0 -chrVIII 365094 367961 HC_gene_4175_tx_2 9 - 365094 367961 . 1 2868 0 -chrVIII 365094 368135 HC_gene_4175_tx_3 1 - 365094 368135 . 2 1231,1648 0,1394 -chrVIII 365094 368135 HC_gene_4175_tx_4 2 - 365094 368135 . 1 3042 0 -chrVIII 365196 367961 HC_gene_4175_tx_5 1 - 365196 367961 . 1 2766 0 -chrVIII 365258 366786 LC_gene_3948_tx_1 1 + 365258 366786 . 1 1529 0 -chrVIII 368079 368518 MC_gene_3949_tx_1 1 + 368079 368518 . 1 440 0 -chrVIII 368382 368899 HC_gene_4176_tx_1 24 - 368382 368899 . 1 518 0 -chrVIII 368382 368960 HC_gene_4176_tx_2 8 - 368382 368960 . 1 579 0 -chrVIII 368382 369837 HC_gene_4176_tx_3 93 - 368382 369837 . 1 1456 0 -chrVIII 368382 369837 HC_gene_4176_tx_4 1 - 368382 369837 . 2 471,918 0,538 -chrVIII 368382 369837 HC_gene_4176_tx_5 1 - 368382 369837 . 2 595,800 0,656 -chrVIII 368382 369837 HC_gene_4176_tx_6 1 - 368382 369837 . 2 1295,63 0,1393 -chrVIII 369960 371126 HC_gene_4177_tx_1 1 - 369960 371126 . 1 1167 0 -chrVIII 369960 371632 HC_gene_4177_tx_2 1 - 369960 371632 . 1 1673 0 -chrVIII 370008 370610 HC_gene_3950_tx_1 162 + 370008 370610 . 1 603 0 -chrVIII 370508 371126 HC_gene_4177_tx_3 15 - 370508 371126 . 1 619 0 -chrVIII 370508 371632 HC_gene_4177_tx_4 108 - 370508 371632 . 1 1125 0 -chrVIII 370508 371632 HC_gene_4177_tx_5 1 - 370508 371632 . 2 279,150 0,975 -chrVIII 370508 371844 HC_gene_4177_tx_6 1 - 370508 371844 . 1 1337 0 -chrVIII 370684 371632 HC_gene_4177_tx_7 1 - 370684 371632 . 1 949 0 -chrVIII 371774 372621 HC_gene_3951_tx_1 2 + 371774 372621 . 1 848 0 -chrVIII 371774 372696 HC_gene_3951_tx_2 35 + 371774 372696 . 1 923 0 -chrVIII 371774 372696 HC_gene_3951_tx_3 1 + 371774 372696 . 2 247,404 0,519 -chrVIII 371774 373347 HC_gene_3951_tx_4 6 + 371774 373347 . 1 1574 0 -chrVIII 372305 372696 HC_gene_3951_tx_5 5 + 372305 372696 . 1 392 0 -chrVIII 372305 373347 HC_gene_3951_tx_6 1 + 372305 373347 . 1 1043 0 -chrVIII 372588 373008 HC_gene_4178_tx_1 11 - 372588 373008 . 1 421 0 -chrVIII 372588 373062 HC_gene_4178_tx_2 1 - 372588 373062 . 2 265,119 0,356 -chrVIII 372588 373062 HC_gene_4178_tx_3 12 - 372588 373062 . 1 475 0 -chrVIII 372588 373193 HC_gene_4178_tx_4 39 - 372588 373193 . 1 606 0 -chrVIII 372588 373401 HC_gene_4178_tx_5 13 - 372588 373401 . 1 814 0 -chrVIII 372588 373481 HC_gene_4178_tx_6 20 - 372588 373481 . 1 894 0 -chrVIII 372588 373918 HC_gene_4178_tx_7 8 - 372588 373918 . 1 1331 0 -chrVIII 372588 374083 HC_gene_4178_tx_8 2 - 372588 374083 . 1 1496 0 -chrVIII 372588 374431 HC_gene_4178_tx_9 55 - 372588 374431 . 1 1844 0 -chrVIII 372588 374431 HC_gene_4178_tx_10 1 - 372588 374431 . 2 43,1196 0,648 -chrVIII 372588 374431 HC_gene_4178_tx_11 1 - 372588 374431 . 2 1149,504 0,1340 -chrVIII 372588 374431 HC_gene_4178_tx_12 1 - 372588 374431 . 2 696,950 0,894 -chrVIII 374559 375009 HC_gene_4179_tx_1 1 - 374559 375009 . 1 451 0 -chrVIII 374559 375319 HC_gene_4179_tx_2 3 - 374559 375319 . 1 761 0 -chrVIII 374670 375091 LC_gene_3952_tx_1 1 + 374670 375091 . 1 422 0 -chrVIII 375678 377340 HC_gene_3953_tx_1 132 + 375678 377340 . 1 1663 0 -chrVIII 375678 377340 HC_gene_3953_tx_2 1 + 375678 377340 . 2 1245,358 0,1305 -chrVIII 375678 377340 HC_gene_3953_tx_3 1 + 375678 377340 . 2 457,781 0,882 -chrVIII 375678 377340 HC_gene_3953_tx_4 1 + 375678 377340 . 2 250,595 0,1068 -chrVIII 375678 377340 HC_gene_3953_tx_5 1 + 375678 377340 . 2 826,572 0,1091 -chrVIII 375678 377340 HC_gene_3953_tx_6 1 + 375678 377340 . 2 337,1017 0,646 -chrVIII 375678 377340 HC_gene_3953_tx_7 1 + 375678 377340 . 2 553,1054 0,609 -chrVIII 375678 377340 HC_gene_3953_tx_8 1 + 375678 377340 . 2 930,647 0,1016 -chrVIII 375678 377340 HC_gene_3953_tx_9 1 + 375678 377340 . 2 1124,450 0,1213 -chrVIII 377247 377537 HC_gene_4180_tx_1 6 - 377247 377537 . 1 291 0 -chrVIII 377247 377719 HC_gene_4180_tx_2 121 - 377247 377719 . 1 473 0 -chrVIII 377895 378087 HC_gene_4181_tx_1 1 - 377895 378087 . 1 193 0 -chrVIII 377895 379211 HC_gene_4181_tx_2 2 - 377895 379211 . 1 1317 0 -chrVIII 377977 380505 HC_gene_3954_tx_1 1 + 377977 380505 . 1 2529 0 -chrVIII 380419 381020 HC_gene_4182_tx_1 1 - 380419 381020 . 1 602 0 -chrVIII 380563 381380 HC_gene_3955_tx_1 4 + 380563 381380 . 1 818 0 -chrVIII 381540 381798 HC_gene_3956_tx_1 35 + 381540 381798 . 1 259 0 -chrVIII 381540 381863 HC_gene_3956_tx_2 2 + 381540 381863 . 1 324 0 -chrVIII 381540 381995 HC_gene_3956_tx_3 32 + 381540 381995 . 1 456 0 -chrVIII 381703 382318 HC_gene_4183_tx_1 15 - 381703 382318 . 1 616 0 -chrVIII 381858 382318 HC_gene_4183_tx_2 3 - 381858 382318 . 1 461 0 -chrVIII 381861 382318 HC_gene_4183_tx_3 4 - 381861 382318 . 1 458 0 -chrVIII 381862 382318 HC_gene_4183_tx_4 3 - 381862 382318 . 1 457 0 -chrVIII 381863 382318 HC_gene_4183_tx_5 3 - 381863 382318 . 1 456 0 -chrVIII 381864 382318 HC_gene_4183_tx_6 6 - 381864 382318 . 1 455 0 -chrVIII 381867 382318 HC_gene_4183_tx_7 109 - 381867 382318 . 1 452 0 -chrVIII 381869 382318 HC_gene_4183_tx_8 11 - 381869 382318 . 1 450 0 -chrVIII 381870 382318 HC_gene_4183_tx_9 141 - 381870 382318 . 1 449 0 -chrVIII 381871 382318 HC_gene_4183_tx_10 140 - 381871 382318 . 1 448 0 -chrVIII 381872 382318 HC_gene_4183_tx_11 275 - 381872 382318 . 1 447 0 -chrVIII 381873 382318 HC_gene_4183_tx_12 63 - 381873 382318 . 1 446 0 -chrVIII 381874 382318 HC_gene_4183_tx_13 53 - 381874 382318 . 1 445 0 -chrVIII 381875 382318 HC_gene_4183_tx_14 27 - 381875 382318 . 1 444 0 -chrVIII 381876 382318 HC_gene_4183_tx_15 57 - 381876 382318 . 1 443 0 -chrVIII 381877 382318 HC_gene_4183_tx_16 28 - 381877 382318 . 1 442 0 -chrVIII 381878 382318 HC_gene_4183_tx_17 14 - 381878 382318 . 1 441 0 -chrVIII 381879 382318 HC_gene_4183_tx_18 15 - 381879 382318 . 1 440 0 -chrVIII 381880 382318 HC_gene_4183_tx_19 34 - 381880 382318 . 1 439 0 -chrVIII 381881 382318 HC_gene_4183_tx_20 16 - 381881 382318 . 1 438 0 -chrVIII 381882 382318 HC_gene_4183_tx_21 32 - 381882 382318 . 1 437 0 -chrVIII 381883 382318 HC_gene_4183_tx_22 51 - 381883 382318 . 1 436 0 -chrVIII 381884 382318 HC_gene_4183_tx_23 105 - 381884 382318 . 1 435 0 -chrVIII 381885 382318 HC_gene_4183_tx_24 7 - 381885 382318 . 1 434 0 -chrVIII 381886 382318 HC_gene_4183_tx_25 52 - 381886 382318 . 1 433 0 -chrVIII 381887 382318 HC_gene_4183_tx_26 9 - 381887 382318 . 1 432 0 -chrVIII 381888 382318 HC_gene_4183_tx_27 9 - 381888 382318 . 1 431 0 -chrVIII 381889 382318 HC_gene_4183_tx_28 14 - 381889 382318 . 1 430 0 -chrVIII 381890 382318 HC_gene_4183_tx_29 13 - 381890 382318 . 1 429 0 -chrVIII 381891 382318 HC_gene_4183_tx_30 17 - 381891 382318 . 1 428 0 -chrVIII 381892 382318 HC_gene_4183_tx_31 46 - 381892 382318 . 1 427 0 -chrVIII 381893 382318 HC_gene_4183_tx_32 169 - 381893 382318 . 1 426 0 -chrVIII 381894 382318 HC_gene_4183_tx_33 51 - 381894 382318 . 1 425 0 -chrVIII 381895 382318 HC_gene_4183_tx_34 10 - 381895 382318 . 1 424 0 -chrVIII 381898 382318 HC_gene_4183_tx_35 4 - 381898 382318 . 1 421 0 -chrVIII 381899 382318 HC_gene_4183_tx_36 7 - 381899 382318 . 1 420 0 -chrVIII 381900 382318 HC_gene_4183_tx_37 29 - 381900 382318 . 1 419 0 -chrVIII 381902 382318 HC_gene_4183_tx_38 3 - 381902 382318 . 1 417 0 -chrVIII 381903 382318 HC_gene_4183_tx_39 3 - 381903 382318 . 1 416 0 -chrVIII 381904 382318 HC_gene_4183_tx_40 7 - 381904 382318 . 1 415 0 -chrVIII 381905 382318 HC_gene_4183_tx_41 35 - 381905 382318 . 1 414 0 -chrVIII 381906 382318 HC_gene_4183_tx_42 10 - 381906 382318 . 1 413 0 -chrVIII 381907 382318 HC_gene_4183_tx_43 12 - 381907 382318 . 1 412 0 -chrVIII 381908 382318 HC_gene_4183_tx_44 4 - 381908 382318 . 1 411 0 -chrVIII 381909 382318 HC_gene_4183_tx_45 47 - 381909 382318 . 1 410 0 -chrVIII 381910 382318 HC_gene_4183_tx_46 14 - 381910 382318 . 1 409 0 -chrVIII 381911 382318 HC_gene_4183_tx_47 4 - 381911 382318 . 1 408 0 -chrVIII 381912 382318 HC_gene_4183_tx_48 8 - 381912 382318 . 1 407 0 -chrVIII 381913 382318 HC_gene_4183_tx_49 20 - 381913 382318 . 1 406 0 -chrVIII 381914 382318 HC_gene_4183_tx_50 19 - 381914 382318 . 1 405 0 -chrVIII 381915 382318 HC_gene_4183_tx_51 20 - 381915 382318 . 1 404 0 -chrVIII 381916 382318 HC_gene_4183_tx_52 47 - 381916 382318 . 1 403 0 -chrVIII 381918 382318 HC_gene_4183_tx_53 45 - 381918 382318 . 1 401 0 -chrVIII 381919 382318 HC_gene_4183_tx_54 8 - 381919 382318 . 1 400 0 -chrVIII 381920 382318 HC_gene_4183_tx_55 99 - 381920 382318 . 1 399 0 -chrVIII 381921 382318 HC_gene_4183_tx_56 129 - 381921 382318 . 1 398 0 -chrVIII 381922 382318 HC_gene_4183_tx_57 59 - 381922 382318 . 1 397 0 -chrVIII 381923 382318 HC_gene_4183_tx_58 6 - 381923 382318 . 1 396 0 -chrVIII 381924 382318 HC_gene_4183_tx_59 11 - 381924 382318 . 1 395 0 -chrVIII 381926 382318 HC_gene_4183_tx_60 4 - 381926 382318 . 1 393 0 -chrVIII 381928 382318 HC_gene_4183_tx_61 4 - 381928 382318 . 1 391 0 -chrVIII 381929 382318 HC_gene_4183_tx_62 9 - 381929 382318 . 1 390 0 -chrVIII 381930 382318 HC_gene_4183_tx_63 28 - 381930 382318 . 1 389 0 -chrVIII 381931 382318 HC_gene_4183_tx_64 24 - 381931 382318 . 1 388 0 -chrVIII 381932 382318 HC_gene_4183_tx_65 8 - 381932 382318 . 1 387 0 -chrVIII 381933 382318 HC_gene_4183_tx_66 7 - 381933 382318 . 1 386 0 -chrVIII 381934 382318 HC_gene_4183_tx_67 23 - 381934 382318 . 1 385 0 -chrVIII 382379 382775 HC_gene_4184_tx_1 1 - 382379 382775 . 1 397 0 -chrVIII 383329 384420 HC_gene_4185_tx_1 1 - 383329 384420 . 1 1092 0 -chrVIII 383414 384568 HC_gene_3957_tx_1 86 + 383414 384568 . 1 1155 0 -chrVIII 383414 384568 HC_gene_3957_tx_2 1 + 383414 384568 . 2 260,596 0,559 -chrVIII 383414 384568 HC_gene_3957_tx_3 1 + 383414 384568 . 2 448,407 0,748 -chrVIII 383489 384311 HC_gene_4185_tx_2 1 - 383489 384311 . 1 823 0 -chrVIII 383489 384691 HC_gene_4185_tx_3 1 - 383489 384691 . 1 1203 0 -chrVIII 383489 384769 HC_gene_4185_tx_4 1 - 383489 384769 . 1 1281 0 -chrVIII 385014 386721 HC_gene_3958_tx_1 6 + 385014 386721 . 1 1708 0 -chrVIII 385014 386721 HC_gene_3958_tx_2 1 + 385014 386721 . 2 230,1426 0,282 -chrVIII 385250 386636 HC_gene_3958_tx_3 44 + 385250 386636 . 1 1387 0 -chrVIII 385250 386636 HC_gene_3958_tx_4 1 + 385250 386636 . 2 836,507 0,880 -chrVIII 385250 386721 HC_gene_3958_tx_5 291 + 385250 386721 . 1 1472 0 -chrVIII 385250 386721 HC_gene_3958_tx_6 1 + 385250 386721 . 2 37,1004 0,468 -chrVIII 385250 386721 HC_gene_3958_tx_7 1 + 385250 386721 . 2 67,1328 0,144 -chrVIII 385250 386721 HC_gene_3958_tx_8 1 + 385250 386721 . 2 311,1096 0,376 -chrVIII 385250 386721 HC_gene_3958_tx_9 1 + 385250 386721 . 2 878,247 0,1225 -chrVIII 385250 386721 HC_gene_3958_tx_10 1 + 385250 386721 . 2 115,1246 0,226 -chrVIII 385250 386721 HC_gene_3958_tx_11 1 + 385250 386721 . 2 849,545 0,927 -chrVIII 385250 386721 HC_gene_3958_tx_12 1 + 385250 386721 . 2 76,1292 0,180 -chrVIII 385250 386721 HC_gene_3958_tx_13 1 + 385250 386721 . 2 88,721 0,751 -chrVIII 385250 386721 HC_gene_3958_tx_14 1 + 385250 386721 . 2 143,1266 0,206 -chrVIII 385250 386721 HC_gene_3958_tx_15 1 + 385250 386721 . 2 237,982 0,490 -chrVIII 385250 386721 HC_gene_3958_tx_16 1 + 385250 386721 . 2 1351,59 0,1413 -chrVIII 385250 386721 HC_gene_3958_tx_17 1 + 385250 386721 . 2 143,1098 0,374 -chrVIII 385250 386721 HC_gene_3958_tx_18 1 + 385250 386721 . 2 684,487 0,985 -chrVIII 385250 386721 HC_gene_3958_tx_19 1 + 385250 386721 . 2 879,458 0,1014 -chrVIII 385250 386721 HC_gene_3958_tx_20 1 + 385250 386721 . 2 416,965 0,507 -chrVIII 385250 386721 HC_gene_3958_tx_21 1 + 385250 386721 . 2 88,1117 0,355 -chrVIII 385250 386721 HC_gene_3958_tx_22 1 + 385250 386721 . 2 67,1292 0,180 -chrVIII 385250 386839 HC_gene_3958_tx_23 2 + 385250 386839 . 1 1590 0 -chrVIII 385366 386636 HC_gene_3958_tx_24 6 + 385366 386636 . 1 1271 0 -chrVIII 385366 386721 HC_gene_3958_tx_25 53 + 385366 386721 . 1 1356 0 -chrVIII 385366 386721 HC_gene_3958_tx_26 1 + 385366 386721 . 2 673,575 0,781 -chrVIII 385366 386721 HC_gene_3958_tx_27 1 + 385366 386721 . 2 712,561 0,795 -chrVIII 385366 386721 HC_gene_3958_tx_28 1 + 385366 386721 . 2 568,716 0,640 -chrVIII 385366 386721 HC_gene_3958_tx_29 1 + 385366 386721 . 2 546,721 0,635 -chrVIII 385366 386839 HC_gene_3958_tx_30 1 + 385366 386839 . 1 1474 0 -chrVIII 385420 386636 HC_gene_3958_tx_31 8 + 385420 386636 . 1 1217 0 -chrVIII 385420 386721 HC_gene_3958_tx_32 35 + 385420 386721 . 1 1302 0 -chrVIII 385585 386636 HC_gene_3958_tx_33 5 + 385585 386636 . 1 1052 0 -chrVIII 385585 386721 HC_gene_3958_tx_34 36 + 385585 386721 . 1 1137 0 -chrVIII 385585 386721 HC_gene_3958_tx_35 1 + 385585 386721 . 3 271,287,322 0,416,815 -chrVIII 385585 386721 HC_gene_3958_tx_36 1 + 385585 386721 . 2 349,716 0,421 -chrVIII 385585 386721 HC_gene_3958_tx_37 1 + 385585 386721 . 2 493,575 0,562 -chrVIII 385699 386636 HC_gene_3958_tx_38 14 + 385699 386636 . 1 938 0 -chrVIII 385699 386721 HC_gene_3958_tx_39 117 + 385699 386721 . 1 1023 0 -chrVIII 385699 386721 HC_gene_3958_tx_40 1 + 385699 386721 . 2 379,583 0,440 -chrVIII 385699 386721 HC_gene_3958_tx_41 1 + 385699 386721 . 2 91,742 0,281 -chrVIII 385699 386721 HC_gene_3958_tx_42 1 + 385699 386721 . 2 430,520 0,503 -chrVIII 385961 386636 HC_gene_3958_tx_43 9 + 385961 386636 . 1 676 0 -chrVIII 385961 386721 HC_gene_3958_tx_44 77 + 385961 386721 . 1 761 0 -chrVIII 385961 386721 HC_gene_3958_tx_45 1 + 385961 386721 . 2 125,583 0,178 -chrVIII 386216 386636 HC_gene_3958_tx_46 25 + 386216 386636 . 1 421 0 -chrVIII 386216 386721 HC_gene_3958_tx_47 148 + 386216 386721 . 1 506 0 -chrVIII 386350 386979 HC_gene_4186_tx_1 8 - 386350 386979 . 1 630 0 -chrVIII 386565 386979 HC_gene_4186_tx_2 16 - 386565 386979 . 1 415 0 -chrVIII 386761 386979 HC_gene_4186_tx_3 1 - 386761 386979 . 1 219 0 -chrVIII 387200 387713 HC_gene_3959_tx_1 501 + 387200 387713 . 1 514 0 -chrVIII 387607 388758 HC_gene_4187_tx_1 10 - 387607 388758 . 1 1152 0 -chrVIII 387705 388758 HC_gene_4187_tx_2 37 - 387705 388758 . 1 1054 0 -chrVIII 387777 388629 LC_gene_3960_tx_1 1 + 387777 388629 . 1 853 0 -chrVIII 389116 389725 MC_gene_4188_tx_1 1 - 389116 389725 . 1 610 0 -chrVIII 389198 390014 MC_gene_4189_tx_1 1 - 389198 390014 . 1 817 0 -chrVIII 390275 391995 HC_gene_3961_tx_1 1 + 390275 391995 . 2 1484,131 0,1590 -chrVIII 390275 391995 HC_gene_3961_tx_2 35 + 390275 391995 . 1 1721 0 -chrVIII 390275 391995 HC_gene_3961_tx_3 1 + 390275 391995 . 2 1550,70 0,1651 -chrVIII 390275 391995 HC_gene_3961_tx_4 1 + 390275 391995 . 2 1497,128 0,1593 -chrVIII 390275 391995 HC_gene_3961_tx_5 1 + 390275 391995 . 2 1471,161 0,1560 -chrVIII 390275 391995 HC_gene_3961_tx_6 1 + 390275 391995 . 2 69,1405 0,316 -chrVIII 390275 391995 HC_gene_3961_tx_7 1 + 390275 391995 . 2 980,689 0,1032 -chrVIII 390275 391995 HC_gene_3961_tx_8 1 + 390275 391995 . 2 1497,94 0,1627 -chrVIII 390275 391995 HC_gene_3961_tx_9 1 + 390275 391995 . 3 370,407,70 0,1145,1651 -chrVIII 390280 391995 HC_gene_3961_tx_10 1 + 390280 391995 . 2 1016,557 0,1159 -chrVIII 390280 391995 HC_gene_3961_tx_11 1 + 390280 391995 . 2 156,1294 0,422 -chrVIII 390297 391995 HC_gene_3961_tx_12 1 + 390297 391995 . 2 206,1416 0,283 -chrVIII 390420 391995 HC_gene_3961_tx_13 6 + 390420 391995 . 1 1576 0 -chrVIII 390496 391995 HC_gene_3961_tx_14 3 + 390496 391995 . 1 1500 0 -chrVIII 390623 391995 HC_gene_3961_tx_15 4 + 390623 391995 . 1 1373 0 -chrVIII 390623 391995 HC_gene_3961_tx_16 1 + 390623 391995 . 2 836,471 0,902 -chrVIII 390885 391995 HC_gene_3961_tx_17 8 + 390885 391995 . 1 1111 0 -chrVIII 390885 391995 HC_gene_3961_tx_18 1 + 390885 391995 . 2 830,146 0,965 -chrVIII 391199 391995 HC_gene_3961_tx_19 4 + 391199 391995 . 1 797 0 -chrVIII 391199 391995 HC_gene_3961_tx_20 1 + 391199 391995 . 2 629,70 0,727 -chrVIII 391290 391995 HC_gene_3961_tx_21 25 + 391290 391995 . 1 706 0 -chrVIII 391290 391995 HC_gene_3961_tx_22 2 + 391290 391995 . 2 532,70 0,636 -chrVIII 391527 391995 HC_gene_3961_tx_23 23 + 391527 391995 . 1 469 0 -chrVIII 391527 391995 HC_gene_3961_tx_24 1 + 391527 391995 . 2 348,46 0,423 -chrVIII 391774 392190 LC_gene_4190_tx_1 1 - 391774 392190 . 1 417 0 -chrVIII 392276 393319 HC_gene_4191_tx_1 4 - 392276 393319 . 1 1044 0 -chrVIII 392292 392595 MC_gene_3962_tx_1 1 + 392292 392595 . 1 304 0 -chrVIII 392381 393319 HC_gene_4191_tx_2 4 - 392381 393319 . 1 939 0 -chrVIII 392508 393096 HC_gene_4191_tx_4 13 - 392508 393096 . 1 589 0 -chrVIII 392508 393319 HC_gene_4191_tx_3 87 - 392508 393319 . 1 812 0 -chrVIII 393513 394297 HC_gene_3963_tx_1 3 + 393513 394297 . 1 785 0 -chrVIII 393513 394432 HC_gene_3963_tx_2 111 + 393513 394432 . 1 920 0 -chrVIII 393513 394432 HC_gene_3963_tx_3 1 + 393513 394432 . 2 138,699 0,221 -chrVIII 393513 394432 HC_gene_3963_tx_4 1 + 393513 394432 . 2 578,293 0,627 -chrVIII 394291 395095 HC_gene_4192_tx_1 13 - 394291 395095 . 1 805 0 -chrVIII 394291 396792 HC_gene_4192_tx_2 1 - 394291 396792 . 2 2088,346 0,2156 -chrVIII 394291 396792 HC_gene_4192_tx_3 17 - 394291 396792 . 1 2502 0 -chrVIII 394291 396792 HC_gene_4192_tx_4 1 - 394291 396792 . 2 767,1661 0,841 -chrVIII 397188 398750 HC_gene_3964_tx_1 1 + 397188 398750 . 1 1563 0 -chrVIII 397188 399140 HC_gene_3964_tx_2 10 + 397188 399140 . 1 1953 0 -chrVIII 397188 399140 HC_gene_3964_tx_3 1 + 397188 399140 . 2 1097,802 0,1151 -chrVIII 399073 400848 HC_gene_4193_tx_1 11 - 399073 400848 . 1 1776 0 -chrVIII 399073 400993 HC_gene_4193_tx_2 14 - 399073 400993 . 1 1921 0 -chrVIII 401339 402071 HC_gene_3965_tx_1 230 + 401339 402071 . 1 733 0 -chrVIII 401630 402071 HC_gene_3965_tx_2 24 + 401630 402071 . 1 442 0 -chrVIII 401717 402071 HC_gene_3965_tx_3 53 + 401717 402071 . 1 355 0 -chrVIII 401722 402700 HC_gene_4194_tx_1 1 - 401722 402700 . 1 979 0 -chrVIII 401871 402700 HC_gene_4194_tx_2 1 - 401871 402700 . 1 830 0 -chrVIII 401931 402700 HC_gene_4194_tx_3 3 - 401931 402700 . 1 770 0 -chrVIII 402043 402700 HC_gene_4194_tx_4 2 - 402043 402700 . 1 658 0 -chrVIII 402180 402577 LC_gene_3966_tx_1 1 + 402180 402577 . 1 398 0 -chrVIII 402921 403405 HC_gene_3967_tx_1 3 + 402921 403405 . 1 485 0 -chrVIII 404176 406264 HC_gene_3968_tx_1 1 + 404176 406264 . 1 2089 0 -chrVIII 404684 406264 HC_gene_3968_tx_2 3 + 404684 406264 . 1 1581 0 -chrVIII 404684 406264 HC_gene_3968_tx_3 1 + 404684 406264 . 2 799,681 0,900 -chrVIII 404765 406264 HC_gene_3968_tx_4 6 + 404765 406264 . 1 1500 0 -chrVIII 405038 406264 HC_gene_3968_tx_5 2 + 405038 406264 . 1 1227 0 -chrVIII 405211 406264 HC_gene_3968_tx_6 11 + 405211 406264 . 1 1054 0 -chrVIII 406176 406789 MC_gene_4195_tx_1 1 - 406176 406789 . 1 614 0 -chrVIII 407005 410971 HC_gene_3969_tx_1 3 + 407005 410971 . 1 3967 0 -chrVIII 407005 410971 HC_gene_3969_tx_2 1 + 407005 410971 . 2 1246,2271 0,1696 -chrVIII 407005 411140 HC_gene_3969_tx_3 1 + 407005 411140 . 1 4136 0 -chrVIII 410821 412047 HC_gene_4196_tx_1 1 - 410821 412047 . 1 1227 0 -chrVIII 410821 412098 HC_gene_4196_tx_2 1 - 410821 412098 . 1 1278 0 -chrVIII 410821 412435 HC_gene_4196_tx_3 8 - 410821 412435 . 1 1615 0 -chrVIII 411078 411446 HC_gene_3970_tx_1 19 + 411078 411446 . 1 369 0 -chrVIII 411078 411644 HC_gene_3970_tx_2 1 + 411078 411644 . 1 567 0 -chrVIII 411078 412350 HC_gene_3970_tx_3 1 + 411078 412350 . 1 1273 0 -chrVIII 411340 412047 HC_gene_4196_tx_4 4 - 411340 412047 . 1 708 0 -chrVIII 411340 412098 HC_gene_4196_tx_5 2 - 411340 412098 . 1 759 0 -chrVIII 411340 412435 HC_gene_4196_tx_6 8 - 411340 412435 . 1 1096 0 -chrVIII 412875 413655 MC_gene_3971_tx_1 1 + 412875 413655 . 1 781 0 -chrVIII 413537 414206 HC_gene_4197_tx_1 6 - 413537 414206 . 1 670 0 -chrVIII 413537 414928 HC_gene_4197_tx_2 1 - 413537 414928 . 1 1392 0 -chrVIII 413537 415208 HC_gene_4197_tx_3 3 - 413537 415208 . 1 1672 0 -chrVIII 413537 415500 HC_gene_4197_tx_4 3 - 413537 415500 . 1 1964 0 -chrVIII 413537 415752 HC_gene_4197_tx_5 1 - 413537 415752 . 1 2216 0 -chrVIII 413537 415752 HC_gene_4197_tx_6 1 - 413537 415752 . 3 589,1099,182 0,636,2034 -chrVIII 417514 419224 HC_gene_3972_tx_1 2 + 417514 419224 . 1 1711 0 -chrVIII 417514 420064 HC_gene_3972_tx_5 1 + 417514 420064 . 1 2551 0 -chrVIII 417588 419224 HC_gene_3972_tx_2 1 + 417588 419224 . 1 1637 0 -chrVIII 417699 419224 HC_gene_3972_tx_3 1 + 417699 419224 . 1 1526 0 -chrVIII 417806 419224 HC_gene_3972_tx_4 1 + 417806 419224 . 1 1419 0 -chrVIII 418867 420090 MC_gene_4198_tx_1 1 - 418867 420090 . 1 1224 0 -chrVIII 420221 420678 HC_gene_4199_tx_1 3 - 420221 420678 . 1 458 0 -chrVIII 420221 420894 HC_gene_4199_tx_3 4 - 420221 420894 . 1 674 0 -chrVIII 420221 420989 HC_gene_4199_tx_4 2 - 420221 420989 . 1 769 0 -chrVIII 420281 420678 HC_gene_4199_tx_2 14 - 420281 420678 . 1 398 0 -chrVIII 420281 420894 HC_gene_4199_tx_5 14 - 420281 420894 . 1 614 0 -chrVIII 420281 420989 HC_gene_4199_tx_6 8 - 420281 420989 . 1 709 0 -chrVIII 420281 420989 HC_gene_4199_tx_7 1 - 420281 420989 . 2 200,333 0,376 -chrVIII 420281 421291 HC_gene_4200_tx_1 5 - 420281 421291 . 1 1011 0 -chrVIII 422319 422421 HC_gene_4201_tx_1 3 - 422319 422421 . 1 103 0 -chrVIII 422693 423579 HC_gene_3973_tx_1 10 + 422693 423579 . 1 887 0 -chrVIII 422894 423579 HC_gene_3973_tx_2 733 + 422894 423579 . 1 686 0 -chrVIII 423053 423464 LC_gene_4202_tx_1 1 - 423053 423464 . 1 412 0 -chrVIII 423169 423579 HC_gene_3973_tx_3 192 + 423169 423579 . 1 411 0 -chrVIII 423717 424561 HC_gene_3974_tx_1 251 + 423717 424561 . 1 845 0 -chrVIII 423717 424827 HC_gene_3974_tx_2 3 + 423717 424827 . 1 1111 0 -chrVIII 424000 424561 HC_gene_3974_tx_3 34 + 424000 424561 . 1 562 0 -chrVIII 424148 424561 HC_gene_3974_tx_4 33 + 424148 424561 . 1 414 0 -chrVIII 424493 429271 HC_gene_4203_tx_1 1 - 424493 429271 . 1 4779 0 -chrVIII 429436 429693 HC_gene_3975_tx_1 9 + 429436 429693 . 1 258 0 -chrVIII 429601 431346 HC_gene_4204_tx_1 4 - 429601 431346 . 1 1746 0 -chrVIII 429601 431772 HC_gene_4204_tx_2 3 - 429601 431772 . 1 2172 0 -chrVIII 430207 433617 LC_gene_3976_tx_1 1 + 430207 433617 . 1 3411 0 -chrVIII 432022 432815 MC_gene_4205_tx_1 1 - 432022 432815 . 1 794 0 -chrVIII 433167 433992 MC_gene_4206_tx_1 1 - 433167 433992 . 1 826 0 -chrVIII 433380 434434 MC_gene_4207_tx_1 1 - 433380 434434 . 1 1055 0 -chrVIII 434906 436713 HC_gene_4208_tx_1 1 - 434906 436713 . 1 1808 0 -chrVIII 434906 436941 HC_gene_4208_tx_2 1 - 434906 436941 . 1 2036 0 -chrVIII 434906 437034 HC_gene_4208_tx_3 2 - 434906 437034 . 1 2129 0 -chrVIII 434906 437034 HC_gene_4208_tx_4 1 - 434906 437034 . 2 850,1191 0,938 -chrVIII 437061 439153 HC_gene_4209_tx_1 1 - 437061 439153 . 2 1711,283 0,1810 -chrVIII 437061 439153 HC_gene_4209_tx_2 6 - 437061 439153 . 1 2093 0 -chrVIII 437425 438136 LC_gene_3977_tx_1 1 + 437425 438136 . 1 712 0 -chrVIII 438152 439153 HC_gene_4209_tx_3 17 - 438152 439153 . 1 1002 0 -chrVIII 439271 440364 HC_gene_3978_tx_1 1 + 439271 440364 . 1 1094 0 -chrVIII 439292 440223 HC_gene_3978_tx_2 27 + 439292 440223 . 1 932 0 -chrVIII 439292 440364 HC_gene_3978_tx_3 5 + 439292 440364 . 1 1073 0 -chrVIII 439296 440364 HC_gene_3978_tx_4 1 + 439296 440364 . 1 1069 0 -chrVIII 439577 440155 LC_gene_4210_tx_1 1 - 439577 440155 . 1 579 0 -chrVIII 440343 442103 HC_gene_3979_tx_1 1 + 440343 442103 . 2 1052,506 0,1255 -chrVIII 440343 442118 HC_gene_3979_tx_2 1 + 440343 442118 . 1 1776 0 -chrVIII 440343 442125 HC_gene_3979_tx_3 1 + 440343 442125 . 1 1783 0 -chrVIII 440343 442127 HC_gene_3979_tx_4 1 + 440343 442127 . 1 1785 0 -chrVIII 440343 442128 HC_gene_3979_tx_5 1 + 440343 442128 . 1 1786 0 -chrVIII 440343 442129 HC_gene_3979_tx_6 1 + 440343 442129 . 1 1787 0 -chrVIII 440343 442134 HC_gene_3979_tx_7 1 + 440343 442134 . 1 1792 0 -chrVIII 440343 442143 HC_gene_3979_tx_8 1 + 440343 442143 . 1 1801 0 -chrVIII 441617 441938 LC_gene_4211_tx_1 1 - 441617 441938 . 1 322 0 -chrVIII 442153 443563 HC_gene_3980_tx_1 42 + 442153 443563 . 1 1411 0 -chrVIII 442153 443563 HC_gene_3980_tx_2 1 + 442153 443563 . 2 756,603 0,808 -chrVIII 442153 443563 HC_gene_3980_tx_3 1 + 442153 443563 . 2 493,850 0,561 -chrVIII 442153 443656 HC_gene_3980_tx_4 12 + 442153 443656 . 1 1504 0 -chrVIII 443063 443512 LC_gene_4212_tx_1 1 - 443063 443512 . 1 450 0 -chrVIII 443809 445512 HC_gene_3981_tx_1 83 + 443809 445512 . 1 1704 0 -chrVIII 443809 445512 HC_gene_3981_tx_2 1 + 443809 445512 . 2 70,1580 0,124 -chrVIII 443809 445512 HC_gene_3981_tx_3 1 + 443809 445512 . 2 1576,36 0,1668 -chrVIII 443809 445512 HC_gene_3981_tx_4 1 + 443809 445512 . 2 336,1113 0,591 -chrVIII 444186 445512 HC_gene_3981_tx_5 5 + 444186 445512 . 1 1327 0 -chrVIII 444296 445512 HC_gene_3981_tx_6 17 + 444296 445512 . 1 1217 0 -chrVIII 444296 445512 HC_gene_3981_tx_7 1 + 444296 445512 . 2 1078,59 0,1158 -chrVIII 444413 445512 HC_gene_3981_tx_8 11 + 444413 445512 . 1 1100 0 -chrVIII 444413 445512 HC_gene_3981_tx_9 1 + 444413 445512 . 2 90,484 0,616 -chrVIII 444413 445512 HC_gene_3981_tx_10 1 + 444413 445512 . 2 122,358 0,742 -chrVIII 444736 445512 HC_gene_3981_tx_11 19 + 444736 445512 . 1 777 0 -chrVIII 444924 445512 HC_gene_3981_tx_12 4 + 444924 445512 . 1 589 0 -chrVIII 444985 445512 HC_gene_3981_tx_13 21 + 444985 445512 . 1 528 0 -chrVIII 445079 445512 HC_gene_3981_tx_14 18 + 445079 445512 . 1 434 0 -chrVIII 445144 445512 HC_gene_3981_tx_15 10 + 445144 445512 . 1 369 0 -chrVIII 445214 445512 HC_gene_3981_tx_16 11 + 445214 445512 . 1 299 0 -chrVIII 445703 447722 HC_gene_3982_tx_1 9 + 445703 447722 . 1 2020 0 -chrVIII 448252 451188 HC_gene_3983_tx_1 1 + 448252 451188 . 1 2937 0 -chrVIII 448252 451199 HC_gene_3983_tx_2 1 + 448252 451199 . 1 2948 0 -chrVIII 448252 451227 HC_gene_3983_tx_3 1 + 448252 451227 . 1 2976 0 -chrVIII 448252 451260 HC_gene_3983_tx_4 1 + 448252 451260 . 1 3009 0 -chrVIII 449528 450405 MC_gene_4213_tx_1 1 - 449528 450405 . 1 878 0 -chrVIII 449985 450651 MC_gene_4214_tx_1 1 - 449985 450651 . 1 667 0 -chrVIII 451296 452762 HC_gene_3984_tx_1 8553 + 451296 452762 . 1 1467 0 -chrVIII 451412 452762 HC_gene_3984_tx_2 2222 + 451412 452762 . 1 1351 0 -chrVIII 451725 452675 LC_gene_4215_tx_1 1 - 451725 452675 . 1 951 0 -chrVIII 451798 452762 HC_gene_3984_tx_3 670 + 451798 452762 . 1 965 0 -chrVIII 452095 452762 HC_gene_3984_tx_4 4924 + 452095 452762 . 1 668 0 -chrVIII 452432 452762 HC_gene_3984_tx_5 991 + 452432 452762 . 1 331 0 -chrVIII 452924 453692 HC_gene_3985_tx_1 104 + 452924 453692 . 1 769 0 -chrVIII 453804 454672 LC_gene_4216_tx_1 1 - 453804 454672 . 1 869 0 -chrVIII 454107 455577 HC_gene_3986_tx_1 1 + 454107 455577 . 1 1471 0 -chrVIII 454107 455640 HC_gene_3986_tx_2 1 + 454107 455640 . 1 1534 0 -chrVIII 454781 455583 MC_gene_4217_tx_1 1 - 454781 455583 . 1 803 0 -chrVIII 454834 455399 MC_gene_4217_tx_2 1 - 454834 455399 . 1 566 0 -chrVIII 454891 455577 HC_gene_3986_tx_3 2 + 454891 455577 . 1 687 0 -chrVIII 454891 455640 HC_gene_3986_tx_4 13 + 454891 455640 . 1 750 0 -chrVIII 456410 456816 MC_gene_4218_tx_1 1 - 456410 456816 . 1 407 0 -chrVIII 456516 457661 MC_gene_4219_tx_1 1 - 456516 457661 . 1 1146 0 -chrVIII 456573 459026 HC_gene_3987_tx_1 1 + 456573 459026 . 1 2454 0 -chrVIII 459004 459534 LC_gene_4220_tx_1 1 - 459004 459534 . 1 531 0 -chrVIII 459252 461714 HC_gene_3988_tx_1 4 + 459252 461714 . 1 2463 0 -chrVIII 460781 461458 MC_gene_4221_tx_1 1 - 460781 461458 . 1 678 0 -chrVIII 461683 461842 HC_gene_3989_tx_1 1 + 461683 461842 . 1 160 0 -chrVIII 461683 461943 HC_gene_3989_tx_2 5 + 461683 461943 . 1 261 0 -chrVIII 461683 462054 HC_gene_3989_tx_3 2 + 461683 462054 . 1 372 0 -chrVIII 461727 462259 MC_gene_4222_tx_1 1 - 461727 462259 . 1 533 0 -chrVIII 462444 463817 HC_gene_3990_tx_1 506 + 462444 463817 . 1 1374 0 -chrVIII 462444 463817 HC_gene_3990_tx_2 1 + 462444 463817 . 2 1234,60 0,1314 -chrVIII 462444 463817 HC_gene_3990_tx_3 1 + 462444 463817 . 2 1263,66 0,1308 -chrVIII 462444 463817 HC_gene_3990_tx_4 1 + 462444 463817 . 2 770,435 0,939 -chrVIII 462444 463817 HC_gene_3990_tx_5 1 + 462444 463817 . 2 1260,67 0,1307 -chrVIII 462444 463817 HC_gene_3990_tx_6 1 + 462444 463817 . 2 1240,74 0,1300 -chrVIII 462444 463817 HC_gene_3990_tx_7 1 + 462444 463817 . 2 539,738 0,636 -chrVIII 462444 463817 HC_gene_3990_tx_8 1 + 462444 463817 . 2 1234,69 0,1305 -chrVIII 462444 463817 HC_gene_3990_tx_9 1 + 462444 463817 . 2 1244,73 0,1301 -chrVIII 462444 463817 HC_gene_3990_tx_10 1 + 462444 463817 . 2 554,435 0,939 -chrVIII 462444 463817 HC_gene_3990_tx_11 1 + 462444 463817 . 2 1234,59 0,1315 -chrVIII 462444 463817 HC_gene_3990_tx_12 1 + 462444 463817 . 2 1263,52 0,1322 -chrVIII 462444 463817 HC_gene_3990_tx_13 1 + 462444 463817 . 2 368,725 0,649 -chrVIII 462444 463817 HC_gene_3990_tx_14 1 + 462444 463817 . 2 1234,54 0,1320 -chrVIII 462444 463817 HC_gene_3990_tx_15 1 + 462444 463817 . 2 1182,77 0,1297 -chrVIII 462444 463817 HC_gene_3990_tx_16 1 + 462444 463817 . 2 335,806 0,568 -chrVIII 462444 463817 HC_gene_3990_tx_17 1 + 462444 463817 . 2 1125,134 0,1240 -chrVIII 462479 463817 HC_gene_3990_tx_18 1 + 462479 463817 . 2 726,537 0,802 -chrVIII 462484 463817 HC_gene_3990_tx_19 1 + 462484 463817 . 2 721,564 0,770 -chrVIII 462745 463817 HC_gene_3990_tx_20 55 + 462745 463817 . 1 1073 0 -chrVIII 462745 463817 HC_gene_3990_tx_21 1 + 462745 463817 . 2 933,75 0,998 -chrVIII 462745 463817 HC_gene_3990_tx_22 1 + 462745 463817 . 2 881,153 0,920 -chrVIII 462895 463817 HC_gene_3990_tx_23 91 + 462895 463817 . 1 923 0 -chrVIII 462955 463817 HC_gene_3990_tx_24 55 + 462955 463817 . 1 863 0 -chrVIII 462955 463817 HC_gene_3990_tx_25 1 + 462955 463817 . 2 281,536 0,327 -chrVIII 463064 463817 HC_gene_3990_tx_26 59 + 463064 463817 . 1 754 0 -chrVIII 463185 463817 HC_gene_3990_tx_27 64 + 463185 463817 . 1 633 0 -chrVIII 463185 463817 HC_gene_3990_tx_28 1 + 463185 463817 . 2 146,373 0,260 -chrVIII 463273 463817 HC_gene_3990_tx_29 59 + 463273 463817 . 1 545 0 -chrVIII 463346 463817 HC_gene_3990_tx_30 95 + 463346 463817 . 1 472 0 -chrVIII 463403 463817 HC_gene_3990_tx_31 30 + 463403 463817 . 1 415 0 -chrVIII 463513 463817 HC_gene_3990_tx_32 112 + 463513 463817 . 1 305 0 -chrVIII 463710 464665 HC_gene_4223_tx_1 2 - 463710 464665 . 1 956 0 -chrVIII 463710 464824 HC_gene_4223_tx_2 2 - 463710 464824 . 1 1115 0 -chrVIII 464251 464665 HC_gene_4223_tx_3 4 - 464251 464665 . 1 415 0 -chrVIII 464251 464824 HC_gene_4223_tx_4 10 - 464251 464824 . 1 574 0 -chrVIII 464895 465500 HC_gene_4224_tx_1 8 - 464895 465500 . 1 606 0 -chrVIII 464949 465857 HC_gene_3991_tx_1 8 + 464949 465857 . 1 909 0 -chrVIII 465059 465500 HC_gene_4224_tx_2 2 - 465059 465500 . 1 442 0 -chrVIII 465124 465500 HC_gene_4224_tx_3 3 - 465124 465500 . 1 377 0 -chrVIII 465446 465857 HC_gene_3991_tx_2 3 + 465446 465857 . 1 412 0 -chrVIII 466296 466837 LC_gene_4225_tx_1 1 - 466296 466837 . 1 542 0 -chrVIII 467178 467998 HC_gene_3992_tx_1 131 + 467178 467998 . 1 821 0 -chrVIII 467414 467998 HC_gene_3992_tx_2 17 + 467414 467998 . 1 585 0 -chrVIII 467416 468034 MC_gene_4226_tx_1 1 - 467416 468034 . 1 619 0 -chrVIII 468183 470628 HC_gene_3993_tx_1 3 + 468183 470628 . 1 2446 0 -chrVIII 468183 470816 HC_gene_3993_tx_2 2 + 468183 470816 . 1 2634 0 -chrVIII 468183 470981 HC_gene_3993_tx_3 1 + 468183 470981 . 1 2799 0 -chrVIII 469865 470543 MC_gene_4227_tx_1 1 - 469865 470543 . 1 679 0 -chrVIII 470856 472488 LC_gene_4228_tx_1 1 - 470856 472488 . 1 1633 0 -chrVIII 470886 472598 HC_gene_3994_tx_1 524 + 470886 472598 . 1 1713 0 -chrVIII 471102 472598 HC_gene_3994_tx_2 32 + 471102 472598 . 1 1497 0 -chrVIII 471240 472598 HC_gene_3994_tx_3 58 + 471240 472598 . 1 1359 0 -chrVIII 471315 472598 HC_gene_3994_tx_4 15 + 471315 472598 . 1 1284 0 -chrVIII 471471 472598 HC_gene_3994_tx_5 49 + 471471 472598 . 1 1128 0 -chrVIII 471581 472598 HC_gene_3994_tx_6 84 + 471581 472598 . 1 1018 0 -chrVIII 471860 472598 HC_gene_3994_tx_7 171 + 471860 472598 . 1 739 0 -chrVIII 472049 472598 HC_gene_3994_tx_8 113 + 472049 472598 . 1 550 0 -chrVIII 473575 473950 LC_gene_4229_tx_1 1 - 473575 473950 . 1 376 0 -chrVIII 473933 474593 HC_gene_3995_tx_1 26 + 473933 474593 . 1 661 0 -chrVIII 474440 474800 HC_gene_4230_tx_1 1 - 474440 474800 . 1 361 0 -chrVIII 474544 474800 HC_gene_4230_tx_2 21 - 474544 474800 . 1 257 0 -chrVIII 475113 475371 LC_gene_3996_tx_1 1 + 475113 475371 . 1 259 0 -chrVIII 475885 480701 HC_gene_4231_tx_1 2 - 475885 480701 . 1 4817 0 -chrVIII 480954 481634 HC_gene_3997_tx_1 1 + 480954 481634 . 1 681 0 -chrVIII 480954 482017 HC_gene_3997_tx_2 46 + 480954 482017 . 1 1064 0 -chrVIII 481292 483881 HC_gene_4232_tx_1 1 - 481292 483881 . 1 2590 0 -chrVIII 481577 482017 HC_gene_3997_tx_3 16 + 481577 482017 . 1 441 0 -chrVIII 481937 483381 HC_gene_4232_tx_2 11 - 481937 483381 . 1 1445 0 -chrVIII 481937 483881 HC_gene_4232_tx_3 48 - 481937 483881 . 1 1945 0 -chrVIII 481937 484587 HC_gene_4232_tx_4 2 - 481937 484587 . 1 2651 0 -chrVIII 484020 486279 HC_gene_3998_tx_1 12 + 484020 486279 . 1 2260 0 -chrVIII 484795 486279 HC_gene_3998_tx_2 180 + 484795 486279 . 1 1485 0 -chrVIII 484904 486279 HC_gene_3998_tx_3 12 + 484904 486279 . 1 1376 0 -chrVIII 485073 486279 HC_gene_3998_tx_4 14 + 485073 486279 . 1 1207 0 -chrVIII 485488 486279 HC_gene_3998_tx_5 27 + 485488 486279 . 1 792 0 -chrVIII 485629 486279 HC_gene_3998_tx_6 30 + 485629 486279 . 1 651 0 -chrVIII 485766 486279 HC_gene_3998_tx_7 19 + 485766 486279 . 1 514 0 -chrVIII 485852 486279 HC_gene_3998_tx_8 24 + 485852 486279 . 1 428 0 -chrVIII 486043 486655 HC_gene_4233_tx_1 80 - 486043 486655 . 1 613 0 -chrVIII 486202 486655 HC_gene_4233_tx_2 35 - 486202 486655 . 1 454 0 -chrVIII 486741 487499 HC_gene_4234_tx_1 1 - 486741 487499 . 1 759 0 -chrVIII 486790 487740 HC_gene_3999_tx_1 82 + 486790 487740 . 1 951 0 -chrVIII 487382 487740 HC_gene_3999_tx_2 10 + 487382 487740 . 1 359 0 -chrVIII 487648 487950 HC_gene_4235_tx_1 283 - 487648 487950 . 1 303 0 -chrVIII 487648 488056 HC_gene_4235_tx_2 86 - 487648 488056 . 1 409 0 -chrVIII 487648 488155 HC_gene_4235_tx_3 79 - 487648 488155 . 1 508 0 -chrVIII 487648 488269 HC_gene_4235_tx_4 1617 - 487648 488269 . 1 622 0 -chrVIII 488348 489074 MC_gene_4236_tx_1 1 - 488348 489074 . 1 727 0 -chrVIII 488608 490488 HC_gene_4000_tx_1 9 + 488608 490488 . 1 1881 0 -chrVIII 490023 491045 MC_gene_4237_tx_1 1 - 490023 491045 . 1 1023 0 -chrVIII 490572 491902 HC_gene_4001_tx_1 25 + 490572 491902 . 1 1331 0 -chrVIII 490572 491902 HC_gene_4001_tx_2 1 + 490572 491902 . 2 463,800 0,531 -chrVIII 490572 491902 HC_gene_4001_tx_3 1 + 490572 491902 . 3 298,184,692 0,370,639 -chrVIII 490581 491902 HC_gene_4001_tx_4 1 + 490581 491902 . 1 1322 0 -chrVIII 490590 491902 HC_gene_4001_tx_5 1 + 490590 491902 . 1 1313 0 -chrVIII 490603 491902 HC_gene_4001_tx_6 1 + 490603 491902 . 1 1300 0 -chrVIII 490604 491902 HC_gene_4001_tx_7 1 + 490604 491902 . 1 1299 0 -chrVIII 490607 491902 HC_gene_4001_tx_8 1 + 490607 491902 . 1 1296 0 -chrVIII 490609 491902 HC_gene_4001_tx_9 1 + 490609 491902 . 1 1294 0 -chrVIII 490726 491902 HC_gene_4001_tx_10 1 + 490726 491902 . 2 565,529 0,648 -chrVIII 490726 491902 HC_gene_4001_tx_11 4 + 490726 491902 . 1 1177 0 -chrVIII 491086 491902 HC_gene_4001_tx_12 3 + 491086 491902 . 1 817 0 -chrVIII 491157 491902 HC_gene_4001_tx_13 4 + 491157 491902 . 1 746 0 -chrVIII 491259 491902 HC_gene_4001_tx_14 4 + 491259 491902 . 1 644 0 -chrVIII 491877 493379 HC_gene_4002_tx_1 1 + 491877 493379 . 1 1503 0 -chrVIII 491877 493582 HC_gene_4002_tx_2 3 + 491877 493582 . 1 1706 0 -chrVIII 491877 493711 HC_gene_4002_tx_3 66 + 491877 493711 . 1 1835 0 -chrVIII 491877 493711 HC_gene_4002_tx_4 1 + 491877 493711 . 2 961,818 0,1017 -chrVIII 491877 493711 HC_gene_4002_tx_5 1 + 491877 493711 . 2 1021,730 0,1105 -chrVIII 491877 493711 HC_gene_4002_tx_6 1 + 491877 493711 . 2 962,774 0,1061 -chrVIII 491877 493711 HC_gene_4002_tx_7 1 + 491877 493711 . 2 173,805 0,1030 -chrVIII 492059 493711 HC_gene_4002_tx_8 10 + 492059 493711 . 1 1653 0 -chrVIII 492928 493379 HC_gene_4002_tx_9 1 + 492928 493379 . 1 452 0 -chrVIII 492928 493582 HC_gene_4002_tx_10 2 + 492928 493582 . 1 655 0 -chrVIII 492928 493711 HC_gene_4002_tx_11 27 + 492928 493711 . 1 784 0 -chrVIII 493043 493711 HC_gene_4002_tx_12 26 + 493043 493711 . 1 669 0 -chrVIII 493326 493582 HC_gene_4002_tx_13 1 + 493326 493582 . 1 257 0 -chrVIII 493326 493711 HC_gene_4002_tx_14 19 + 493326 493711 . 1 386 0 -chrVIII 493878 496297 HC_gene_4003_tx_1 22 + 493878 496297 . 1 2420 0 -chrVIII 493878 496297 HC_gene_4003_tx_2 1 + 493878 496297 . 2 331,1995 0,425 -chrVIII 493878 496446 HC_gene_4003_tx_3 1 + 493878 496446 . 1 2569 0 -chrVIII 495925 496297 HC_gene_4003_tx_4 9 + 495925 496297 . 1 373 0 -chrVIII 496185 497146 HC_gene_4238_tx_1 5 - 496185 497146 . 1 962 0 -chrVIII 496185 497265 HC_gene_4238_tx_2 39 - 496185 497265 . 1 1081 0 -chrVIII 496493 497493 MC_gene_4004_tx_1 1 + 496493 497493 . 1 1001 0 -chrVIII 497399 498109 HC_gene_4239_tx_1 9 - 497399 498109 . 1 711 0 -chrVIII 497399 498436 HC_gene_4239_tx_2 23 - 497399 498436 . 1 1038 0 -chrVIII 497399 498880 HC_gene_4239_tx_3 10 - 497399 498880 . 1 1482 0 -chrVIII 497399 498880 HC_gene_4239_tx_4 14 - 497399 498880 . 2 1321,94 0,1388 -chrVIII 497399 498880 HC_gene_4239_tx_5 2 - 497399 498880 . 2 1309,94 0,1388 -chrVIII 497399 498880 HC_gene_4239_tx_6 1 - 497399 498880 . 3 598,604,94 0,717,1388 -chrVIII 497485 499001 LC_gene_4005_tx_1 1 + 497485 499001 . 1 1517 0 -chrVIII 499064 499946 HC_gene_4006_tx_1 3 + 499064 499946 . 1 883 0 -chrVIII 499064 499947 HC_gene_4006_tx_2 7 + 499064 499947 . 1 884 0 -chrVIII 499064 499948 HC_gene_4006_tx_3 1 + 499064 499948 . 1 885 0 -chrVIII 499064 499949 HC_gene_4006_tx_4 3 + 499064 499949 . 1 886 0 -chrVIII 499064 499951 HC_gene_4006_tx_5 1 + 499064 499951 . 1 888 0 -chrVIII 499064 499952 HC_gene_4006_tx_6 8 + 499064 499952 . 1 889 0 -chrVIII 499064 499953 HC_gene_4006_tx_7 1 + 499064 499953 . 1 890 0 -chrVIII 499064 499954 HC_gene_4006_tx_8 2 + 499064 499954 . 1 891 0 -chrVIII 499064 499955 HC_gene_4006_tx_9 1 + 499064 499955 . 1 892 0 -chrVIII 499064 499958 HC_gene_4006_tx_10 1 + 499064 499958 . 1 895 0 -chrVIII 499064 499960 HC_gene_4006_tx_11 4 + 499064 499960 . 1 897 0 -chrVIII 499064 500020 HC_gene_4006_tx_12 3 + 499064 500020 . 1 957 0 -chrVIII 499064 500151 HC_gene_4006_tx_13 13 + 499064 500151 . 1 1088 0 -chrVIII 499259 499946 HC_gene_4006_tx_15 1 + 499259 499946 . 1 688 0 -chrVIII 499259 499947 HC_gene_4006_tx_16 3 + 499259 499947 . 1 689 0 -chrVIII 499259 499952 HC_gene_4006_tx_17 1 + 499259 499952 . 1 694 0 -chrVIII 499259 499955 HC_gene_4006_tx_18 1 + 499259 499955 . 1 697 0 -chrVIII 499259 500151 HC_gene_4006_tx_14 2 + 499259 500151 . 1 893 0 -chrVIII 499325 499947 HC_gene_4006_tx_19 1 + 499325 499947 . 1 623 0 -chrVIII 499325 499952 HC_gene_4006_tx_20 2 + 499325 499952 . 1 628 0 -chrVIII 499603 499949 HC_gene_4006_tx_21 1 + 499603 499949 . 1 347 0 -chrVIII 499603 499952 HC_gene_4006_tx_22 2 + 499603 499952 . 1 350 0 -chrVIII 499735 499951 HC_gene_4006_tx_23 1 + 499735 499951 . 1 217 0 -chrVIII 499735 500020 HC_gene_4006_tx_24 1 + 499735 500020 . 1 286 0 -chrVIII 499735 500151 HC_gene_4006_tx_25 4 + 499735 500151 . 1 417 0 -chrVIII 499799 500460 HC_gene_4240_tx_1 1 - 499799 500460 . 1 662 0 -chrVIII 499799 501179 HC_gene_4240_tx_3 2 - 499799 501179 . 1 1381 0 -chrVIII 499864 500197 HC_gene_4240_tx_7 15 - 499864 500197 . 1 334 0 -chrVIII 499864 500460 HC_gene_4240_tx_2 33 - 499864 500460 . 1 597 0 -chrVIII 499864 501179 HC_gene_4240_tx_4 119 - 499864 501179 . 1 1316 0 -chrVIII 499864 501179 HC_gene_4240_tx_5 1 - 499864 501179 . 2 1032,117 0,1199 -chrVIII 499864 501179 HC_gene_4240_tx_6 1 - 499864 501179 . 2 501,705 0,611 -chrVIII 501296 502276 HC_gene_4007_tx_1 1 + 501296 502276 . 1 981 0 -chrVIII 501868 502259 MC_gene_4241_tx_1 1 - 501868 502259 . 1 392 0 -chrVIII 502355 504261 HC_gene_4008_tx_1 2 + 502355 504261 . 1 1907 0 -chrVIII 502355 504455 HC_gene_4008_tx_2 4 + 502355 504455 . 1 2101 0 -chrVIII 502669 503538 LC_gene_4242_tx_1 1 - 502669 503538 . 1 870 0 -chrVIII 504336 504692 HC_gene_4243_tx_1 158 - 504336 504692 . 1 357 0 -chrVIII 504336 505042 HC_gene_4243_tx_2 446 - 504336 505042 . 1 707 0 -chrVIII 504336 505230 HC_gene_4243_tx_4 649 - 504336 505230 . 1 895 0 -chrVIII 504336 505570 HC_gene_4243_tx_6 29 - 504336 505570 . 1 1235 0 -chrVIII 504336 505570 HC_gene_4243_tx_7 345 - 504336 505570 . 2 912,54 0,1181 -chrVIII 504336 505570 HC_gene_4243_tx_8 8 - 504336 505570 . 2 908,54 0,1181 -chrVIII 504447 504692 HC_gene_4243_tx_11 17 - 504447 504692 . 1 246 0 -chrVIII 504447 505042 HC_gene_4243_tx_3 125 - 504447 505042 . 1 596 0 -chrVIII 504447 505230 HC_gene_4243_tx_5 293 - 504447 505230 . 1 784 0 -chrVIII 504447 505570 HC_gene_4243_tx_9 139 - 504447 505570 . 2 801,54 0,1070 -chrVIII 504447 505570 HC_gene_4243_tx_10 12 - 504447 505570 . 1 1124 0 -chrVIII 506113 508794 HC_gene_4009_tx_1 3 + 506113 508794 . 1 2682 0 -chrVIII 506271 508794 HC_gene_4009_tx_2 10 + 506271 508794 . 1 2524 0 -chrVIII 506271 508794 HC_gene_4009_tx_3 1 + 506271 508794 . 2 1570,774 0,1750 -chrVIII 506271 508794 HC_gene_4009_tx_4 1 + 506271 508794 . 2 849,1302 0,1222 -chrVIII 507710 508661 LC_gene_4244_tx_1 1 - 507710 508661 . 1 952 0 -chrVIII 508926 511962 HC_gene_4010_tx_1 10 + 508926 511962 . 1 3037 0 -chrVIII 508926 511962 HC_gene_4010_tx_2 1 + 508926 511962 . 2 420,2474 0,563 -chrVIII 508926 512051 HC_gene_4010_tx_3 5 + 508926 512051 . 1 3126 0 -chrVIII 509315 511962 HC_gene_4010_tx_4 1 + 509315 511962 . 1 2648 0 -chrVIII 509315 512051 HC_gene_4010_tx_5 1 + 509315 512051 . 1 2737 0 -chrVIII 511949 512126 HC_gene_4245_tx_1 2 - 511949 512126 . 1 178 0 -chrVIII 512453 514885 HC_gene_4011_tx_1 1 + 512453 514885 . 2 183,2131 0,302 -chrVIII 512477 514885 HC_gene_4011_tx_2 17 + 512477 514885 . 1 2409 0 -chrVIII 512477 514885 HC_gene_4011_tx_3 1 + 512477 514885 . 2 907,1138 0,1271 -chrVIII 512477 514885 HC_gene_4011_tx_4 1 + 512477 514885 . 2 1095,865 0,1544 -chrVIII 512477 514885 HC_gene_4011_tx_5 1 + 512477 514885 . 2 939,1403 0,1006 -chrVIII 512623 514885 HC_gene_4011_tx_6 4 + 512623 514885 . 1 2263 0 -chrVIII 514782 515225 HC_gene_4246_tx_1 3 - 514782 515225 . 1 444 0 -chrVIII 514782 515563 HC_gene_4246_tx_2 2 - 514782 515563 . 1 782 0 -chrVIII 514782 516526 HC_gene_4246_tx_3 21 - 514782 516526 . 1 1745 0 -chrVIII 516619 517250 LC_gene_4247_tx_1 1 - 516619 517250 . 1 632 0 -chrVIII 516656 517180 HC_gene_4012_tx_1 24 + 516656 517180 . 1 525 0 -chrVIII 516710 517180 HC_gene_4012_tx_2 3 + 516710 517180 . 1 471 0 -chrVIII 517510 518869 HC_gene_4013_tx_1 194 + 517510 518869 . 1 1360 0 -chrVIII 517510 518869 HC_gene_4013_tx_2 1 + 517510 518869 . 2 81,1135 0,225 -chrVIII 517510 518869 HC_gene_4013_tx_3 1 + 517510 518869 . 3 174,257,650 0,232,710 -chrVIII 517510 518869 HC_gene_4013_tx_4 1 + 517510 518869 . 2 1194,111 0,1249 -chrVIII 517511 518869 HC_gene_4013_tx_5 1 + 517511 518869 . 2 535,701 0,658 -chrVIII 517730 518869 HC_gene_4013_tx_6 34 + 517730 518869 . 1 1140 0 -chrVIII 517815 518869 HC_gene_4013_tx_7 11 + 517815 518869 . 1 1055 0 -chrVIII 518040 518869 HC_gene_4013_tx_8 19 + 518040 518869 . 1 830 0 -chrVIII 518195 518869 HC_gene_4013_tx_9 35 + 518195 518869 . 1 675 0 -chrVIII 518195 518869 HC_gene_4013_tx_10 1 + 518195 518869 . 2 530,96 0,579 -chrVIII 518292 518869 HC_gene_4013_tx_11 8 + 518292 518869 . 1 578 0 -chrVIII 518348 518869 HC_gene_4013_tx_12 40 + 518348 518869 . 1 522 0 -chrVIII 518502 518869 HC_gene_4013_tx_13 60 + 518502 518869 . 1 368 0 -chrVIII 518761 519202 MC_gene_4248_tx_1 1 - 518761 519202 . 1 442 0 -chrVIII 518991 519406 HC_gene_4014_tx_1 3 + 518991 519406 . 1 416 0 -chrVIII 518991 519504 HC_gene_4014_tx_2 3 + 518991 519504 . 1 514 0 -chrVIII 518991 520428 HC_gene_4014_tx_3 3 + 518991 520428 . 1 1438 0 -chrVIII 518991 520568 HC_gene_4014_tx_4 1 + 518991 520568 . 1 1578 0 -chrVIII 519293 519789 HC_gene_4249_tx_1 3 - 519293 519789 . 1 497 0 -chrVIII 519293 520121 HC_gene_4249_tx_2 2 - 519293 520121 . 1 829 0 -chrVIII 519293 520279 HC_gene_4249_tx_3 9 - 519293 520279 . 1 987 0 -chrVIII 519417 520428 HC_gene_4014_tx_5 14 + 519417 520428 . 1 1012 0 -chrVIII 519417 520568 HC_gene_4014_tx_6 1 + 519417 520568 . 1 1152 0 -chrVIII 519528 520428 HC_gene_4014_tx_7 1 + 519528 520428 . 1 901 0 -chrVIII 519962 520428 HC_gene_4014_tx_8 7 + 519962 520428 . 1 467 0 -chrVIII 520485 521844 HC_gene_4250_tx_1 1 - 520485 521844 . 1 1360 0 -chrVIII 520579 521844 HC_gene_4250_tx_2 6 - 520579 521844 . 1 1266 0 -chrVIII 522167 523059 MC_gene_4015_tx_1 1 + 522167 523059 . 1 893 0 -chrVIII 523077 524944 MC_gene_4251_tx_1 1 - 523077 524944 . 1 1868 0 -chrVIII 523107 524446 HC_gene_4016_tx_1 1 + 523107 524446 . 1 1340 0 -chrVIII 523107 524962 HC_gene_4016_tx_2 4 + 523107 524962 . 1 1856 0 -chrVIII 523107 524962 HC_gene_4016_tx_3 1 + 523107 524962 . 2 1095,697 0,1159 -chrVIII 528009 528704 HC_gene_4017_tx_1 4 + 528009 528704 . 1 696 0 -chrVIII 528836 529267 HC_gene_4252_tx_1 4 - 528836 529267 . 1 432 0 -chrVIII 528836 529834 HC_gene_4252_tx_2 1 - 528836 529834 . 1 999 0 -chrVIII 529560 530559 HC_gene_4018_tx_1 2 + 529560 530559 . 1 1000 0 -chrVIII 530494 533465 LC_gene_4253_tx_1 1 - 530494 533465 . 1 2972 0 -chrVIII 534040 535727 LC_gene_4019_tx_1 1 + 534040 535727 . 1 1688 0 -chrVIII 540331 543468 LC_gene_4254_tx_1 1 - 540331 543468 . 2 915,2114 0,1024 -chrVIII 541555 543627 MC_gene_4020_tx_1 1 + 541555 543627 . 1 2073 0 -chrVIII 543577 545475 HC_gene_4255_tx_1 6 - 543577 545475 . 1 1899 0 -chrVIII 543577 545475 HC_gene_4255_tx_2 1 - 543577 545475 . 2 770,1056 0,843 -chrVIII 543577 549400 HC_gene_4255_tx_3 2 - 543577 549400 . 1 5824 0 -chrVIII 548953 549652 MC_gene_4021_tx_1 1 + 548953 549652 . 1 700 0 -chrVIII 550668 551530 LC_gene_4022_tx_1 1 + 550668 551530 . 1 863 0 -chrVIII 552325 553569 HC_gene_4023_tx_1 2 + 552325 553569 . 1 1245 0 -chrVIII 553700 553983 MC_gene_4024_tx_1 1 + 553700 553983 . 1 284 0 -chrVIII 554173 554368 HC_gene_4025_tx_1 8 + 554173 554368 . 1 196 0 -chrVIII 554173 556084 HC_gene_4025_tx_2 2 + 554173 556084 . 1 1912 0 -chrVIII 554173 556153 HC_gene_4025_tx_3 1 + 554173 556153 . 1 1981 0 -chrVIII 554289 556084 HC_gene_4025_tx_4 9 + 554289 556084 . 1 1796 0 -chrVIII 554289 556153 HC_gene_4025_tx_5 92 + 554289 556153 . 1 1865 0 -chrVIII 554289 556153 HC_gene_4025_tx_6 1 + 554289 556153 . 2 1077,724 0,1141 -chrVIII 554289 556153 HC_gene_4025_tx_7 1 + 554289 556153 . 2 1078,712 0,1153 -chrVIII 554289 556153 HC_gene_4025_tx_8 1 + 554289 556153 . 2 1047,766 0,1099 -chrVIII 554289 556153 HC_gene_4025_tx_9 1 + 554289 556153 . 2 87,1223 0,642 -chrVIII 554289 556153 HC_gene_4025_tx_10 1 + 554289 556153 . 2 1089,695 0,1170 -chrVIII 554289 556153 HC_gene_4025_tx_11 1 + 554289 556153 . 2 1216,492 0,1373 -chrVIII 554289 556153 HC_gene_4025_tx_12 1 + 554289 556153 . 2 293,818 0,1047 -chrVIII 554289 556153 HC_gene_4025_tx_13 1 + 554289 556153 . 2 1192,598 0,1267 -chrVIII 557452 562044 LC_gene_4026_tx_1 1 + 557452 562044 . 1 4593 0 -chrX 401 3699 LC_gene_4884_tx_1 1 - 401 3699 . 1 3299 0 -chrX 16668 20705 LC_gene_4885_tx_1 1 - 16668 20705 . 1 4038 0 -chrX 20475 21297 LC_gene_4588_tx_1 1 + 20475 21297 . 1 823 0 -chrX 21955 22717 HC_gene_4589_tx_1 26 + 21955 22717 . 1 763 0 -chrX 22485 23689 LC_gene_4886_tx_1 1 - 22485 23689 . 1 1205 0 -chrX 23125 23864 HC_gene_4590_tx_1 193 + 23125 23864 . 1 740 0 -chrX 24218 28342 HC_gene_4887_tx_1 1 - 24218 28342 . 1 4125 0 -chrX 26944 29392 HC_gene_4591_tx_1 1 + 26944 29392 . 1 2449 0 -chrX 28478 29086 HC_gene_4591_tx_2 5 + 28478 29086 . 1 609 0 -chrX 28478 29184 HC_gene_4591_tx_3 3 + 28478 29184 . 1 707 0 -chrX 28478 29392 HC_gene_4591_tx_4 5 + 28478 29392 . 1 915 0 -chrX 30010 30864 MC_gene_4888_tx_1 1 - 30010 30864 . 1 855 0 -chrX 30227 31093 MC_gene_4889_tx_1 1 - 30227 31093 . 1 867 0 -chrX 31028 33248 MC_gene_4890_tx_1 1 - 31028 33248 . 1 2221 0 -chrX 31823 33359 HC_gene_4592_tx_1 10 + 31823 33359 . 1 1537 0 -chrX 31823 33452 HC_gene_4592_tx_2 32 + 31823 33452 . 1 1630 0 -chrX 31823 33452 HC_gene_4592_tx_3 1 + 31823 33452 . 2 881,698 0,932 -chrX 32667 33359 HC_gene_4592_tx_4 1 + 32667 33359 . 1 693 0 -chrX 32667 33452 HC_gene_4592_tx_5 3 + 32667 33452 . 1 786 0 -chrX 33545 36277 HC_gene_4891_tx_1 1 - 33545 36277 . 1 2733 0 -chrX 33726 36277 HC_gene_4891_tx_2 29 - 33726 36277 . 1 2552 0 -chrX 33726 36277 HC_gene_4891_tx_3 1 - 33726 36277 . 2 1298,718 0,1834 -chrX 33726 36277 HC_gene_4891_tx_4 1 - 33726 36277 . 2 1177,902 0,1650 -chrX 34289 36162 LC_gene_4593_tx_1 1 + 34289 36162 . 1 1874 0 -chrX 36254 37477 MC_gene_4892_tx_1 1 - 36254 37477 . 2 756,383 0,841 -chrX 36769 37817 HC_gene_4594_tx_1 3 + 36769 37817 . 1 1049 0 -chrX 36866 37817 HC_gene_4594_tx_2 76 + 36866 37817 . 1 952 0 -chrX 36866 37817 HC_gene_4594_tx_3 1 + 36866 37817 . 2 283,596 0,356 -chrX 37217 37817 HC_gene_4594_tx_4 11 + 37217 37817 . 1 601 0 -chrX 37476 37661 MC_gene_4893_tx_1 1 - 37476 37661 . 1 186 0 -chrX 37912 39026 HC_gene_4595_tx_1 9 + 37912 39026 . 1 1115 0 -chrX 38102 39026 HC_gene_4595_tx_2 1 + 38102 39026 . 1 925 0 -chrX 39234 40064 HC_gene_4596_tx_1 1 + 39234 40064 . 1 831 0 -chrX 39558 41242 HC_gene_4894_tx_1 1 - 39558 41242 . 2 583,1013 0,672 -chrX 39910 41184 HC_gene_4894_tx_2 1 - 39910 41184 . 1 1275 0 -chrX 39910 41242 HC_gene_4894_tx_3 8 - 39910 41242 . 1 1333 0 -chrX 39910 41242 HC_gene_4894_tx_4 1 - 39910 41242 . 2 986,235 0,1098 -chrX 40010 41184 HC_gene_4894_tx_5 5 - 40010 41184 . 1 1175 0 -chrX 40010 41242 HC_gene_4894_tx_6 32 - 40010 41242 . 1 1233 0 -chrX 40010 41242 HC_gene_4894_tx_7 1 - 40010 41242 . 2 701,192 0,1041 -chrX 40010 41242 HC_gene_4894_tx_8 1 - 40010 41242 . 2 391,574 0,659 -chrX 41198 41862 HC_gene_4895_tx_1 1 - 41198 41862 . 1 665 0 -chrX 41518 41901 LC_gene_4597_tx_1 1 + 41518 41901 . 1 384 0 -chrX 43654 44122 HC_gene_4896_tx_1 1 - 43654 44122 . 1 469 0 -chrX 45265 47445 HC_gene_4897_tx_1 1 - 45265 47445 . 1 2181 0 -chrX 47578 49917 HC_gene_4898_tx_1 1 - 47578 49917 . 1 2340 0 -chrX 47696 48499 MC_gene_4598_tx_1 1 + 47696 48499 . 1 804 0 -chrX 48384 49917 HC_gene_4898_tx_2 1 - 48384 49917 . 1 1534 0 -chrX 49219 50124 LC_gene_4599_tx_1 1 + 49219 50124 . 1 906 0 -chrX 50026 50453 HC_gene_4899_tx_1 48 - 50026 50453 . 1 428 0 -chrX 50026 50453 HC_gene_4899_tx_2 5 - 50026 50453 . 2 243,42 0,386 -chrX 50233 50669 HC_gene_4600_tx_1 7 + 50233 50669 . 1 437 0 -chrX 50556 53167 HC_gene_4900_tx_1 4 - 50556 53167 . 1 2612 0 -chrX 50556 53167 HC_gene_4900_tx_2 1 - 50556 53167 . 2 1456,674 0,1938 -chrX 53348 54283 HC_gene_4601_tx_1 1 + 53348 54283 . 1 936 0 -chrX 53348 54285 HC_gene_4601_tx_2 1 + 53348 54285 . 1 938 0 -chrX 53348 54286 HC_gene_4601_tx_3 1 + 53348 54286 . 1 939 0 -chrX 53348 54295 HC_gene_4601_tx_4 1 + 53348 54295 . 1 948 0 -chrX 53348 54304 HC_gene_4601_tx_5 1 + 53348 54304 . 1 957 0 -chrX 53348 54321 HC_gene_4601_tx_6 1 + 53348 54321 . 1 974 0 -chrX 53348 54323 HC_gene_4601_tx_7 1 + 53348 54323 . 1 976 0 -chrX 53348 54341 HC_gene_4601_tx_8 1 + 53348 54341 . 1 994 0 -chrX 53348 54419 HC_gene_4601_tx_9 12 + 53348 54419 . 1 1072 0 -chrX 53932 54419 HC_gene_4601_tx_10 1 + 53932 54419 . 1 488 0 -chrX 54199 54873 LC_gene_4901_tx_1 1 - 54199 54873 . 1 675 0 -chrX 54376 56244 HC_gene_4602_tx_1 1 + 54376 56244 . 1 1869 0 -chrX 54376 56247 HC_gene_4602_tx_2 1 + 54376 56247 . 1 1872 0 -chrX 54376 56269 HC_gene_4602_tx_3 1 + 54376 56269 . 1 1894 0 -chrX 54376 56331 HC_gene_4602_tx_4 1 + 54376 56331 . 1 1956 0 -chrX 54376 56335 HC_gene_4602_tx_5 1 + 54376 56335 . 1 1960 0 -chrX 54376 56341 HC_gene_4602_tx_6 1 + 54376 56341 . 1 1966 0 -chrX 54376 56353 HC_gene_4602_tx_7 1 + 54376 56353 . 2 1867,44 0,1934 -chrX 54376 56408 HC_gene_4602_tx_8 1 + 54376 56408 . 1 2033 0 -chrX 56260 57003 HC_gene_4902_tx_1 60 - 56260 57003 . 1 744 0 -chrX 56260 57220 HC_gene_4902_tx_2 36 - 56260 57220 . 1 961 0 -chrX 56260 58083 HC_gene_4902_tx_3 10 - 56260 58083 . 1 1824 0 -chrX 56260 58837 HC_gene_4902_tx_4 81 - 56260 58837 . 1 2578 0 -chrX 58597 58981 MC_gene_4603_tx_1 1 + 58597 58981 . 1 385 0 -chrX 59324 59822 MC_gene_4604_tx_1 1 + 59324 59822 . 1 499 0 -chrX 59630 60169 HC_gene_4903_tx_1 29 - 59630 60169 . 1 540 0 -chrX 60821 63606 HC_gene_4605_tx_1 24 + 60821 63606 . 1 2786 0 -chrX 60821 63606 HC_gene_4605_tx_2 1 + 60821 63606 . 2 1484,1241 0,1545 -chrX 60821 63606 HC_gene_4605_tx_3 1 + 60821 63606 . 3 1430,239,901 0,1545,1885 -chrX 60821 63606 HC_gene_4605_tx_4 1 + 60821 63606 . 2 1600,1115 0,1671 -chrX 60821 63606 HC_gene_4605_tx_5 1 + 60821 63606 . 2 1329,1364 0,1422 -chrX 62478 63546 LC_gene_4904_tx_1 1 - 62478 63546 . 1 1069 0 -chrX 63762 66411 HC_gene_4606_tx_1 1 + 63762 66411 . 1 2650 0 -chrX 63762 67645 HC_gene_4606_tx_2 9 + 63762 67645 . 1 3884 0 -chrX 63762 67645 HC_gene_4606_tx_3 1 + 63762 67645 . 2 920,2898 0,986 -chrX 66141 67645 HC_gene_4606_tx_4 2 + 66141 67645 . 1 1505 0 -chrX 66263 67645 HC_gene_4606_tx_5 6 + 66263 67645 . 1 1383 0 -chrX 67000 67645 HC_gene_4606_tx_6 7 + 67000 67645 . 1 646 0 -chrX 67151 67645 HC_gene_4606_tx_7 21 + 67151 67645 . 1 495 0 -chrX 67271 67645 HC_gene_4606_tx_8 8 + 67271 67645 . 1 375 0 -chrX 67715 68198 HC_gene_4905_tx_1 30 - 67715 68198 . 1 484 0 -chrX 67715 68405 HC_gene_4905_tx_2 21 - 67715 68405 . 1 691 0 -chrX 67715 68545 HC_gene_4905_tx_3 27 - 67715 68545 . 1 831 0 -chrX 67715 68675 HC_gene_4905_tx_4 20 - 67715 68675 . 1 961 0 -chrX 67715 68806 HC_gene_4905_tx_5 269 - 67715 68806 . 1 1092 0 -chrX 67811 68888 HC_gene_4607_tx_1 4 + 67811 68888 . 1 1078 0 -chrX 69299 70934 HC_gene_4608_tx_1 4 + 69299 70934 . 1 1636 0 -chrX 69299 71013 HC_gene_4608_tx_2 25 + 69299 71013 . 1 1715 0 -chrX 69299 71013 HC_gene_4608_tx_3 1 + 69299 71013 . 2 98,1361 0,354 -chrX 70414 71013 HC_gene_4608_tx_4 2 + 70414 71013 . 1 600 0 -chrX 70643 72623 LC_gene_4906_tx_1 1 - 70643 72623 . 1 1981 0 -chrX 71346 72296 HC_gene_4609_tx_1 1 + 71346 72296 . 1 951 0 -chrX 71346 72643 HC_gene_4609_tx_2 25 + 71346 72643 . 1 1298 0 -chrX 72549 73051 HC_gene_4907_tx_1 56 - 72549 73051 . 1 503 0 -chrX 72549 73203 HC_gene_4907_tx_2 28 - 72549 73203 . 1 655 0 -chrX 72549 73302 HC_gene_4907_tx_3 32 - 72549 73302 . 1 754 0 -chrX 72549 73420 HC_gene_4907_tx_4 229 - 72549 73420 . 1 872 0 -chrX 72728 73134 LC_gene_4610_tx_1 1 + 72728 73134 . 1 407 0 -chrX 73756 74243 HC_gene_4611_tx_1 2 + 73756 74243 . 1 488 0 -chrX 73756 74245 HC_gene_4611_tx_2 2 + 73756 74245 . 1 490 0 -chrX 73756 74248 HC_gene_4611_tx_3 1 + 73756 74248 . 1 493 0 -chrX 73756 74249 HC_gene_4611_tx_4 1 + 73756 74249 . 1 494 0 -chrX 73756 74250 HC_gene_4611_tx_5 1 + 73756 74250 . 1 495 0 -chrX 73756 74252 HC_gene_4611_tx_6 1 + 73756 74252 . 1 497 0 -chrX 73756 74253 HC_gene_4611_tx_7 1 + 73756 74253 . 1 498 0 -chrX 73756 74254 HC_gene_4611_tx_8 3 + 73756 74254 . 1 499 0 -chrX 73756 74256 HC_gene_4611_tx_9 2 + 73756 74256 . 1 501 0 -chrX 73756 74259 HC_gene_4611_tx_10 1 + 73756 74259 . 1 504 0 -chrX 73756 74262 HC_gene_4611_tx_11 2 + 73756 74262 . 1 507 0 -chrX 73756 74267 HC_gene_4611_tx_12 1 + 73756 74267 . 1 512 0 -chrX 73756 74268 HC_gene_4611_tx_13 2 + 73756 74268 . 1 513 0 -chrX 73756 74271 HC_gene_4611_tx_14 1 + 73756 74271 . 1 516 0 -chrX 73756 74272 HC_gene_4611_tx_15 6 + 73756 74272 . 1 517 0 -chrX 73756 74273 HC_gene_4611_tx_16 1 + 73756 74273 . 1 518 0 -chrX 73756 74274 HC_gene_4611_tx_17 3 + 73756 74274 . 1 519 0 -chrX 73756 74277 HC_gene_4611_tx_18 2 + 73756 74277 . 1 522 0 -chrX 73756 74278 HC_gene_4611_tx_19 1 + 73756 74278 . 1 523 0 -chrX 73756 74279 HC_gene_4611_tx_20 1 + 73756 74279 . 1 524 0 -chrX 73756 74280 HC_gene_4611_tx_21 4 + 73756 74280 . 1 525 0 -chrX 73756 74717 HC_gene_4611_tx_22 3 + 73756 74717 . 2 41,513 0,449 -chrX 73756 74717 HC_gene_4611_tx_23 73 + 73756 74717 . 1 962 0 -chrX 73756 74717 HC_gene_4611_tx_24 2 + 73756 74717 . 2 361,513 0,449 -chrX 73756 74717 HC_gene_4611_tx_25 2 + 73756 74717 . 2 45,513 0,449 -chrX 73756 74717 HC_gene_4611_tx_26 1 + 73756 74717 . 2 358,513 0,449 -chrX 73756 74854 HC_gene_4611_tx_27 6 + 73756 74854 . 1 1099 0 -chrX 73756 74854 HC_gene_4611_tx_28 1 + 73756 74854 . 2 41,650 0,449 -chrX 74220 74717 HC_gene_4611_tx_29 104 + 74220 74717 . 1 498 0 -chrX 74220 74854 HC_gene_4611_tx_30 2 + 74220 74854 . 1 635 0 -chrX 74330 74717 HC_gene_4611_tx_33 86 + 74330 74717 . 1 388 0 -chrX 74330 74854 HC_gene_4611_tx_31 7 + 74330 74854 . 1 525 0 -chrX 74415 74717 HC_gene_4611_tx_34 23 + 74415 74717 . 1 303 0 -chrX 74415 74854 HC_gene_4611_tx_32 1 + 74415 74854 . 1 440 0 -chrX 74705 75085 HC_gene_4908_tx_1 1 - 74705 75085 . 1 381 0 -chrX 74710 75319 HC_gene_4909_tx_1 1 - 74710 75319 . 1 610 0 -chrX 74711 75319 HC_gene_4909_tx_2 1 - 74711 75319 . 1 609 0 -chrX 74712 75319 HC_gene_4909_tx_3 5 - 74712 75319 . 1 608 0 -chrX 74713 75319 HC_gene_4909_tx_4 2 - 74713 75319 . 1 607 0 -chrX 74719 75085 HC_gene_4908_tx_2 1 - 74719 75085 . 1 367 0 -chrX 74719 75319 HC_gene_4909_tx_5 11 - 74719 75319 . 1 601 0 -chrX 74720 75319 HC_gene_4909_tx_6 1 - 74720 75319 . 1 600 0 -chrX 74723 75319 HC_gene_4909_tx_7 3 - 74723 75319 . 1 597 0 -chrX 74724 75319 HC_gene_4909_tx_8 1 - 74724 75319 . 1 596 0 -chrX 74725 75085 HC_gene_4908_tx_3 1 - 74725 75085 . 1 361 0 -chrX 74725 75319 HC_gene_4909_tx_9 3 - 74725 75319 . 1 595 0 -chrX 74726 75085 HC_gene_4908_tx_4 1 - 74726 75085 . 1 360 0 -chrX 74728 75319 HC_gene_4909_tx_10 1 - 74728 75319 . 1 592 0 -chrX 74731 75319 HC_gene_4909_tx_11 4 - 74731 75319 . 1 589 0 -chrX 74731 75319 HC_gene_4909_tx_12 1 - 74731 75319 . 2 416,106 0,483 -chrX 74732 75319 HC_gene_4909_tx_13 3 - 74732 75319 . 1 588 0 -chrX 74733 75319 HC_gene_4909_tx_14 3 - 74733 75319 . 1 587 0 -chrX 74735 75085 HC_gene_4908_tx_5 1 - 74735 75085 . 1 351 0 -chrX 74735 75319 HC_gene_4909_tx_15 3 - 74735 75319 . 1 585 0 -chrX 74736 75319 HC_gene_4909_tx_16 5 - 74736 75319 . 1 584 0 -chrX 74737 75319 HC_gene_4909_tx_17 1 - 74737 75319 . 1 583 0 -chrX 74738 75319 HC_gene_4909_tx_18 4 - 74738 75319 . 1 582 0 -chrX 74739 75319 HC_gene_4909_tx_19 1 - 74739 75319 . 1 581 0 -chrX 74740 75319 HC_gene_4909_tx_20 1 - 74740 75319 . 1 580 0 -chrX 74741 75319 HC_gene_4909_tx_21 5 - 74741 75319 . 1 579 0 -chrX 74742 75319 HC_gene_4909_tx_22 8 - 74742 75319 . 1 578 0 -chrX 74743 75319 HC_gene_4909_tx_23 4 - 74743 75319 . 1 577 0 -chrX 74744 75085 HC_gene_4908_tx_6 1 - 74744 75085 . 1 342 0 -chrX 74744 75319 HC_gene_4909_tx_24 9 - 74744 75319 . 1 576 0 -chrX 74745 75085 HC_gene_4908_tx_7 1 - 74745 75085 . 1 341 0 -chrX 74745 75319 HC_gene_4909_tx_25 1 - 74745 75319 . 1 575 0 -chrX 74746 75319 HC_gene_4909_tx_26 4 - 74746 75319 . 1 574 0 -chrX 74747 75085 HC_gene_4908_tx_8 1 - 74747 75085 . 1 339 0 -chrX 74747 75319 HC_gene_4909_tx_27 17 - 74747 75319 . 1 573 0 -chrX 74748 75085 HC_gene_4908_tx_9 11 - 74748 75085 . 1 338 0 -chrX 74748 75319 HC_gene_4909_tx_28 89 - 74748 75319 . 1 572 0 -chrX 74750 75319 HC_gene_4909_tx_29 4 - 74750 75319 . 1 570 0 -chrX 74751 75085 HC_gene_4908_tx_10 3 - 74751 75085 . 1 335 0 -chrX 74751 75319 HC_gene_4909_tx_30 74 - 74751 75319 . 1 569 0 -chrX 74751 75319 HC_gene_4909_tx_31 1 - 74751 75319 . 2 31,488 0,81 -chrX 74752 75085 HC_gene_4908_tx_11 3 - 74752 75085 . 1 334 0 -chrX 74752 75319 HC_gene_4909_tx_32 24 - 74752 75319 . 1 568 0 -chrX 74753 75085 HC_gene_4908_tx_12 1 - 74753 75085 . 1 333 0 -chrX 74753 75319 HC_gene_4909_tx_33 30 - 74753 75319 . 1 567 0 -chrX 74754 75085 HC_gene_4908_tx_13 1 - 74754 75085 . 1 332 0 -chrX 74754 75319 HC_gene_4909_tx_34 4 - 74754 75319 . 1 566 0 -chrX 74756 75085 HC_gene_4908_tx_14 1 - 74756 75085 . 1 330 0 -chrX 74756 75319 HC_gene_4909_tx_35 22 - 74756 75319 . 1 564 0 -chrX 74757 75319 HC_gene_4909_tx_36 1 - 74757 75319 . 1 563 0 -chrX 74758 75085 HC_gene_4908_tx_15 12 - 74758 75085 . 1 328 0 -chrX 74758 75319 HC_gene_4909_tx_37 98 - 74758 75319 . 1 562 0 -chrX 74759 75319 HC_gene_4909_tx_38 10 - 74759 75319 . 1 561 0 -chrX 74760 75085 HC_gene_4908_tx_16 46 - 74760 75085 . 1 326 0 -chrX 74760 75319 HC_gene_4909_tx_39 572 - 74760 75319 . 1 560 0 -chrX 74760 75319 HC_gene_4909_tx_40 1 - 74760 75319 . 2 78,439 0,121 -chrX 74761 75085 HC_gene_4908_tx_17 8 - 74761 75085 . 1 325 0 -chrX 74761 75319 HC_gene_4909_tx_41 103 - 74761 75319 . 1 559 0 -chrX 74762 75085 HC_gene_4908_tx_18 5 - 74762 75085 . 1 324 0 -chrX 74762 75319 HC_gene_4909_tx_42 132 - 74762 75319 . 1 558 0 -chrX 74763 75085 HC_gene_4908_tx_19 2 - 74763 75085 . 1 323 0 -chrX 74763 75319 HC_gene_4909_tx_43 63 - 74763 75319 . 1 557 0 -chrX 74764 75085 HC_gene_4908_tx_20 3 - 74764 75085 . 1 322 0 -chrX 74764 75319 HC_gene_4909_tx_44 39 - 74764 75319 . 1 556 0 -chrX 74764 75319 HC_gene_4909_tx_45 1 - 74764 75319 . 2 48,417 0,139 -chrX 74765 75085 HC_gene_4908_tx_21 9 - 74765 75085 . 1 321 0 -chrX 74765 75319 HC_gene_4909_tx_46 93 - 74765 75319 . 1 555 0 -chrX 74765 75319 HC_gene_4909_tx_47 1 - 74765 75319 . 2 91,396 0,159 -chrX 74765 75319 HC_gene_4909_tx_48 1 - 74765 75319 . 2 47,425 0,130 -chrX 74765 75319 HC_gene_4909_tx_49 1 - 74765 75319 . 2 57,381 0,174 -chrX 74765 75319 HC_gene_4909_tx_50 1 - 74765 75319 . 2 57,406 0,149 -chrX 74765 75319 HC_gene_4909_tx_51 1 - 74765 75319 . 2 41,381 0,174 -chrX 74766 75085 HC_gene_4908_tx_22 11 - 74766 75085 . 1 320 0 -chrX 74766 75319 HC_gene_4909_tx_52 184 - 74766 75319 . 1 554 0 -chrX 74766 75319 HC_gene_4909_tx_53 2 - 74766 75319 . 2 30,381 0,173 -chrX 74766 75319 HC_gene_4909_tx_54 1 - 74766 75319 . 2 56,389 0,165 -chrX 74766 75319 HC_gene_4909_tx_55 1 - 74766 75319 . 2 93,411 0,143 -chrX 74766 75319 HC_gene_4909_tx_56 1 - 74766 75319 . 2 86,417 0,137 -chrX 74767 75085 HC_gene_4908_tx_23 1 - 74767 75085 . 1 319 0 -chrX 74767 75319 HC_gene_4909_tx_57 21 - 74767 75319 . 1 553 0 -chrX 74768 75085 HC_gene_4908_tx_24 2 - 74768 75085 . 1 318 0 -chrX 74768 75319 HC_gene_4909_tx_58 15 - 74768 75319 . 1 552 0 -chrX 74769 75085 HC_gene_4908_tx_25 5 - 74769 75085 . 1 317 0 -chrX 74769 75319 HC_gene_4909_tx_59 43 - 74769 75319 . 1 551 0 -chrX 74769 75319 HC_gene_4909_tx_60 1 - 74769 75319 . 2 53,406 0,145 -chrX 74770 75085 HC_gene_4908_tx_26 4 - 74770 75085 . 1 316 0 -chrX 74770 75319 HC_gene_4909_tx_61 43 - 74770 75319 . 1 550 0 -chrX 74771 75085 HC_gene_4908_tx_27 3 - 74771 75085 . 1 315 0 -chrX 74771 75319 HC_gene_4909_tx_62 37 - 74771 75319 . 1 549 0 -chrX 74772 75085 HC_gene_4908_tx_28 4 - 74772 75085 . 1 314 0 -chrX 74772 75319 HC_gene_4909_tx_63 40 - 74772 75319 . 1 548 0 -chrX 74773 75319 HC_gene_4909_tx_64 13 - 74773 75319 . 1 547 0 -chrX 74774 75085 HC_gene_4908_tx_29 1 - 74774 75085 . 1 312 0 -chrX 74774 75319 HC_gene_4909_tx_65 10 - 74774 75319 . 1 546 0 -chrX 74774 75319 HC_gene_4909_tx_66 1 - 74774 75319 . 2 48,448 0,98 -chrX 74775 75085 HC_gene_4908_tx_30 10 - 74775 75085 . 1 311 0 -chrX 74775 75319 HC_gene_4909_tx_67 84 - 74775 75319 . 1 545 0 -chrX 74776 75085 HC_gene_4908_tx_31 8 - 74776 75085 . 1 310 0 -chrX 74776 75319 HC_gene_4909_tx_68 131 - 74776 75319 . 1 544 0 -chrX 74777 75085 HC_gene_4908_tx_32 4 - 74777 75085 . 1 309 0 -chrX 74777 75319 HC_gene_4909_tx_69 38 - 74777 75319 . 1 543 0 -chrX 74778 75085 HC_gene_4908_tx_33 1 - 74778 75085 . 1 308 0 -chrX 74778 75319 HC_gene_4909_tx_70 4 - 74778 75319 . 1 542 0 -chrX 74779 75319 HC_gene_4909_tx_71 6 - 74779 75319 . 1 541 0 -chrX 74780 75085 HC_gene_4908_tx_34 2 - 74780 75085 . 1 306 0 -chrX 74780 75319 HC_gene_4909_tx_72 50 - 74780 75319 . 1 540 0 -chrX 74781 75085 HC_gene_4908_tx_35 6 - 74781 75085 . 1 305 0 -chrX 74781 75319 HC_gene_4909_tx_73 53 - 74781 75319 . 1 539 0 -chrX 74782 75085 HC_gene_4908_tx_36 1 - 74782 75085 . 1 304 0 -chrX 74782 75319 HC_gene_4909_tx_74 12 - 74782 75319 . 1 538 0 -chrX 74783 75319 HC_gene_4909_tx_75 6 - 74783 75319 . 1 537 0 -chrX 74784 75319 HC_gene_4909_tx_76 14 - 74784 75319 . 1 536 0 -chrX 74785 75319 HC_gene_4909_tx_77 11 - 74785 75319 . 1 535 0 -chrX 74786 75319 HC_gene_4909_tx_78 14 - 74786 75319 . 1 534 0 -chrX 74787 75085 HC_gene_4908_tx_37 1 - 74787 75085 . 1 299 0 -chrX 74787 75319 HC_gene_4909_tx_79 13 - 74787 75319 . 1 533 0 -chrX 74787 75319 HC_gene_4909_tx_80 1 - 74787 75319 . 2 35,448 0,85 -chrX 74788 75085 HC_gene_4908_tx_38 3 - 74788 75085 . 1 298 0 -chrX 74788 75319 HC_gene_4909_tx_81 4 - 74788 75319 . 1 532 0 -chrX 74789 75319 HC_gene_4909_tx_82 6 - 74789 75319 . 1 531 0 -chrX 74790 75085 HC_gene_4908_tx_39 1 - 74790 75085 . 1 296 0 -chrX 74790 75319 HC_gene_4909_tx_83 52 - 74790 75319 . 1 530 0 -chrX 74791 75319 HC_gene_4909_tx_84 6 - 74791 75319 . 1 529 0 -chrX 74792 75319 HC_gene_4909_tx_85 21 - 74792 75319 . 1 528 0 -chrX 74793 75085 HC_gene_4908_tx_40 1 - 74793 75085 . 1 293 0 -chrX 74793 75319 HC_gene_4909_tx_86 1 - 74793 75319 . 1 527 0 -chrX 74794 75319 HC_gene_4909_tx_87 2 - 74794 75319 . 1 526 0 -chrX 74795 75319 HC_gene_4909_tx_88 9 - 74795 75319 . 1 525 0 -chrX 74797 75319 HC_gene_4909_tx_89 10 - 74797 75319 . 1 523 0 -chrX 74798 75085 HC_gene_4908_tx_41 1 - 74798 75085 . 1 288 0 -chrX 74798 75319 HC_gene_4909_tx_90 9 - 74798 75319 . 1 522 0 -chrX 74799 75319 HC_gene_4909_tx_91 9 - 74799 75319 . 1 521 0 -chrX 74800 75319 HC_gene_4909_tx_92 20 - 74800 75319 . 1 520 0 -chrX 74801 75319 HC_gene_4909_tx_93 1 - 74801 75319 . 1 519 0 -chrX 74802 75085 HC_gene_4908_tx_42 1 - 74802 75085 . 1 284 0 -chrX 74802 75319 HC_gene_4909_tx_94 3 - 74802 75319 . 1 518 0 -chrX 74803 75319 HC_gene_4909_tx_95 2 - 74803 75319 . 1 517 0 -chrX 74804 75319 HC_gene_4909_tx_96 3 - 74804 75319 . 1 516 0 -chrX 74806 75085 HC_gene_4908_tx_43 1 - 74806 75085 . 1 280 0 -chrX 74806 75319 HC_gene_4909_tx_97 9 - 74806 75319 . 1 514 0 -chrX 74808 75319 HC_gene_4909_tx_98 1 - 74808 75319 . 1 512 0 -chrX 74809 75319 HC_gene_4909_tx_99 4 - 74809 75319 . 1 511 0 -chrX 74810 75319 HC_gene_4909_tx_100 4 - 74810 75319 . 1 510 0 -chrX 74812 75319 HC_gene_4909_tx_101 1 - 74812 75319 . 1 508 0 -chrX 74814 75085 HC_gene_4908_tx_44 1 - 74814 75085 . 1 272 0 -chrX 74814 75319 HC_gene_4909_tx_102 5 - 74814 75319 . 1 506 0 -chrX 74815 75319 HC_gene_4909_tx_103 7 - 74815 75319 . 1 505 0 -chrX 74816 75319 HC_gene_4909_tx_104 5 - 74816 75319 . 1 504 0 -chrX 74817 75319 HC_gene_4909_tx_105 8 - 74817 75319 . 1 503 0 -chrX 74818 75319 HC_gene_4909_tx_106 7 - 74818 75319 . 1 502 0 -chrX 74819 75319 HC_gene_4909_tx_107 10 - 74819 75319 . 1 501 0 -chrX 74820 75319 HC_gene_4909_tx_108 2 - 74820 75319 . 1 500 0 -chrX 74821 75085 HC_gene_4908_tx_45 1 - 74821 75085 . 1 265 0 -chrX 74821 75319 HC_gene_4909_tx_109 25 - 74821 75319 . 1 499 0 -chrX 74822 75319 HC_gene_4909_tx_110 1 - 74822 75319 . 1 498 0 -chrX 74823 75319 HC_gene_4909_tx_111 13 - 74823 75319 . 1 497 0 -chrX 74824 75085 HC_gene_4908_tx_46 1 - 74824 75085 . 1 262 0 -chrX 74824 75319 HC_gene_4909_tx_112 4 - 74824 75319 . 1 496 0 -chrX 74825 75085 HC_gene_4908_tx_47 1 - 74825 75085 . 1 261 0 -chrX 74825 75319 HC_gene_4909_tx_113 16 - 74825 75319 . 1 495 0 -chrX 74826 75319 HC_gene_4909_tx_114 3 - 74826 75319 . 1 494 0 -chrX 74827 75319 HC_gene_4909_tx_115 10 - 74827 75319 . 1 493 0 -chrX 74828 75085 HC_gene_4908_tx_48 1 - 74828 75085 . 1 258 0 -chrX 74828 75319 HC_gene_4909_tx_116 12 - 74828 75319 . 1 492 0 -chrX 74830 75319 HC_gene_4909_tx_117 4 - 74830 75319 . 1 490 0 -chrX 74831 75319 HC_gene_4909_tx_118 5 - 74831 75319 . 1 489 0 -chrX 74832 75085 HC_gene_4908_tx_49 2 - 74832 75085 . 1 254 0 -chrX 74832 75319 HC_gene_4909_tx_119 21 - 74832 75319 . 1 488 0 -chrX 74833 75085 HC_gene_4908_tx_50 2 - 74833 75085 . 1 253 0 -chrX 74833 75319 HC_gene_4909_tx_120 21 - 74833 75319 . 1 487 0 -chrX 74834 75319 HC_gene_4909_tx_121 7 - 74834 75319 . 1 486 0 -chrX 74835 75085 HC_gene_4908_tx_51 1 - 74835 75085 . 1 251 0 -chrX 74835 75319 HC_gene_4909_tx_122 4 - 74835 75319 . 1 485 0 -chrX 74836 75319 HC_gene_4909_tx_123 3 - 74836 75319 . 1 484 0 -chrX 74837 75319 HC_gene_4909_tx_124 4 - 74837 75319 . 1 483 0 -chrX 74838 75085 HC_gene_4908_tx_52 2 - 74838 75085 . 1 248 0 -chrX 74838 75319 HC_gene_4909_tx_125 28 - 74838 75319 . 1 482 0 -chrX 74839 75085 HC_gene_4908_tx_53 2 - 74839 75085 . 1 247 0 -chrX 74839 75319 HC_gene_4909_tx_126 20 - 74839 75319 . 1 481 0 -chrX 74840 75085 HC_gene_4908_tx_54 2 - 74840 75085 . 1 246 0 -chrX 74840 75319 HC_gene_4909_tx_127 13 - 74840 75319 . 1 480 0 -chrX 74841 75085 HC_gene_4908_tx_55 1 - 74841 75085 . 1 245 0 -chrX 74841 75319 HC_gene_4909_tx_128 40 - 74841 75319 . 1 479 0 -chrX 74842 75085 HC_gene_4908_tx_56 1 - 74842 75085 . 1 244 0 -chrX 74842 75319 HC_gene_4909_tx_129 22 - 74842 75319 . 1 478 0 -chrX 74842 75319 HC_gene_4909_tx_130 1 - 74842 75319 . 2 175,234 0,244 -chrX 74843 75319 HC_gene_4909_tx_131 4 - 74843 75319 . 1 477 0 -chrX 74844 75085 HC_gene_4908_tx_57 1 - 74844 75085 . 1 242 0 -chrX 74844 75319 HC_gene_4909_tx_132 14 - 74844 75319 . 1 476 0 -chrX 75906 76614 HC_gene_4612_tx_1 120 + 75906 76614 . 2 33,290 0,419 -chrX 76319 76614 HC_gene_4612_tx_2 6415 + 76319 76614 . 1 296 0 -chrX 76541 79283 HC_gene_4910_tx_1 3 - 76541 79283 . 1 2743 0 -chrX 76541 79421 HC_gene_4910_tx_2 1 - 76541 79421 . 1 2881 0 -chrX 76687 79283 HC_gene_4910_tx_3 3 - 76687 79283 . 1 2597 0 -chrX 76853 77234 MC_gene_4613_tx_1 1 + 76853 77234 . 1 382 0 -chrX 77998 79482 MC_gene_4614_tx_1 1 + 77998 79482 . 1 1485 0 -chrX 78570 80087 MC_gene_4615_tx_1 1 + 78570 80087 . 1 1518 0 -chrX 80125 81969 HC_gene_4616_tx_1 68 + 80125 81969 . 1 1845 0 -chrX 80297 81969 HC_gene_4616_tx_2 2 + 80297 81969 . 1 1673 0 -chrX 80397 81969 HC_gene_4616_tx_3 6 + 80397 81969 . 1 1573 0 -chrX 80984 81969 HC_gene_4616_tx_4 6 + 80984 81969 . 1 986 0 -chrX 81431 81969 HC_gene_4616_tx_5 19 + 81431 81969 . 1 539 0 -chrX 81757 81969 HC_gene_4616_tx_6 19 + 81757 81969 . 1 213 0 -chrX 81906 82494 HC_gene_4911_tx_1 3 - 81906 82494 . 1 589 0 -chrX 81906 83040 HC_gene_4911_tx_2 7 - 81906 83040 . 1 1135 0 -chrX 83209 83897 HC_gene_4617_tx_1 8 + 83209 83897 . 1 689 0 -chrX 83374 83821 HC_gene_4912_tx_1 6 - 83374 83821 . 1 448 0 -chrX 83410 83897 HC_gene_4617_tx_2 146 + 83410 83897 . 1 488 0 -chrX 83540 83897 HC_gene_4617_tx_3 14 + 83540 83897 . 1 358 0 -chrX 83992 85444 HC_gene_4618_tx_1 48 + 83992 85444 . 1 1453 0 -chrX 84093 85444 HC_gene_4618_tx_2 4 + 84093 85444 . 1 1352 0 -chrX 85645 87201 HC_gene_4619_tx_1 1 + 85645 87201 . 1 1557 0 -chrX 85645 87580 HC_gene_4619_tx_2 1 + 85645 87580 . 1 1936 0 -chrX 85645 87580 HC_gene_4619_tx_3 1 + 85645 87580 . 2 345,737 0,1199 -chrX 87479 88596 HC_gene_4913_tx_1 48 - 87479 88596 . 1 1118 0 -chrX 87479 88596 HC_gene_4913_tx_2 1 - 87479 88596 . 2 367,699 0,419 -chrX 88718 89254 HC_gene_4620_tx_1 215 + 88718 89254 . 1 537 0 -chrX 89157 89512 HC_gene_4914_tx_1 19 - 89157 89512 . 1 356 0 -chrX 89157 89663 HC_gene_4914_tx_2 20 - 89157 89663 . 1 507 0 -chrX 89157 89839 HC_gene_4914_tx_3 21 - 89157 89839 . 1 683 0 -chrX 89157 90114 HC_gene_4914_tx_4 186 - 89157 90114 . 1 958 0 -chrX 89350 90675 LC_gene_4621_tx_1 1 + 89350 90675 . 1 1326 0 -chrX 90764 91754 HC_gene_4622_tx_1 1337 + 90764 91754 . 2 331,343 0,648 -chrX 90764 91754 HC_gene_4622_tx_2 26 + 90764 91754 . 1 991 0 -chrX 90764 91754 HC_gene_4622_tx_3 9 + 90764 91754 . 2 326,345 0,646 -chrX 90764 91754 HC_gene_4622_tx_4 1 + 90764 91754 . 2 326,341 0,650 -chrX 90764 91754 HC_gene_4622_tx_5 39 + 90764 91754 . 2 331,337 0,654 -chrX 90764 91754 HC_gene_4622_tx_6 2 + 90764 91754 . 3 331,232,67 0,648,924 -chrX 90764 91754 HC_gene_4622_tx_7 9 + 90764 91754 . 2 331,330 0,661 -chrX 90764 91754 HC_gene_4622_tx_8 2 + 90764 91754 . 2 322,343 0,648 -chrX 90764 91754 HC_gene_4622_tx_9 1 + 90764 91754 . 2 326,338 0,653 -chrX 90764 91754 HC_gene_4622_tx_10 6 + 90764 91754 . 2 317,345 0,646 -chrX 90764 91754 HC_gene_4622_tx_11 1 + 90764 91754 . 2 317,304 0,687 -chrX 90764 91754 HC_gene_4622_tx_12 1 + 90764 91754 . 2 323,343 0,648 -chrX 90764 91754 HC_gene_4622_tx_13 1 + 90764 91754 . 2 310,343 0,648 -chrX 90764 91754 HC_gene_4622_tx_14 1 + 90764 91754 . 3 134,64,343 0,267,648 -chrX 90764 91754 HC_gene_4622_tx_15 1 + 90764 91754 . 2 326,285 0,706 -chrX 90764 91754 HC_gene_4622_tx_16 1 + 90764 91754 . 2 134,330 0,661 -chrX 90764 91754 HC_gene_4622_tx_17 1 + 90764 91754 . 2 331,134 0,857 -chrX 90764 91754 HC_gene_4622_tx_18 1 + 90764 91754 . 2 303,343 0,648 -chrX 90764 91754 HC_gene_4622_tx_19 1 + 90764 91754 . 2 326,323 0,668 -chrX 90764 91754 HC_gene_4622_tx_20 1 + 90764 91754 . 2 336,304 0,687 -chrX 90764 91754 HC_gene_4622_tx_21 1 + 90764 91754 . 2 312,343 0,648 -chrX 90764 91754 HC_gene_4622_tx_22 1 + 90764 91754 . 2 314,343 0,648 -chrX 90764 91922 HC_gene_4622_tx_23 33 + 90764 91922 . 2 331,511 0,648 -chrX 90764 91922 HC_gene_4622_tx_24 1 + 90764 91922 . 2 326,453 0,706 -chrX 90764 91922 HC_gene_4622_tx_25 2 + 90764 91922 . 1 1159 0 -chrX 90888 91754 HC_gene_4622_tx_26 1 + 90888 91754 . 2 139,345 0,522 -chrX 90916 91754 HC_gene_4622_tx_27 5 + 90916 91754 . 2 179,337 0,502 -chrX 90916 91754 HC_gene_4622_tx_28 134 + 90916 91754 . 2 179,343 0,496 -chrX 90916 91754 HC_gene_4622_tx_29 1 + 90916 91754 . 2 165,337 0,502 -chrX 90916 91754 HC_gene_4622_tx_30 1 + 90916 91754 . 2 179,330 0,509 -chrX 90916 91754 HC_gene_4622_tx_31 2 + 90916 91754 . 2 174,345 0,494 -chrX 90916 91754 HC_gene_4622_tx_32 1 + 90916 91754 . 1 839 0 -chrX 91008 91754 HC_gene_4622_tx_33 122 + 91008 91754 . 2 87,343 0,404 -chrX 91008 91754 HC_gene_4622_tx_34 7 + 91008 91754 . 2 87,337 0,410 -chrX 91008 91754 HC_gene_4622_tx_35 1 + 91008 91754 . 2 87,330 0,417 -chrX 91008 91754 HC_gene_4622_tx_36 1 + 91008 91754 . 2 73,345 0,402 -chrX 91008 91754 HC_gene_4622_tx_37 13 + 91008 91754 . 1 747 0 -chrX 91008 91754 HC_gene_4622_tx_38 1 + 91008 91754 . 2 71,343 0,404 -chrX 91008 91754 HC_gene_4622_tx_39 1 + 91008 91754 . 2 82,345 0,402 -chrX 91008 91922 HC_gene_4622_tx_40 5 + 91008 91922 . 2 87,511 0,404 -chrX 91419 91754 HC_gene_4622_tx_41 220 + 91419 91754 . 1 336 0 -chrX 91419 91754 HC_gene_4622_tx_42 1 + 91419 91754 . 2 225,25 0,311 -chrX 91419 91922 HC_gene_4622_tx_43 5 + 91419 91922 . 1 504 0 -chrX 91825 93365 HC_gene_4915_tx_1 5 - 91825 93365 . 1 1541 0 -chrX 91825 94041 HC_gene_4915_tx_3 1 - 91825 94041 . 2 1666,384 0,1833 -chrX 91825 94041 HC_gene_4915_tx_4 1 - 91825 94041 . 1 2217 0 -chrX 91825 94424 HC_gene_4915_tx_5 1 - 91825 94424 . 1 2600 0 -chrX 91825 94571 HC_gene_4915_tx_6 9 - 91825 94571 . 1 2747 0 -chrX 91825 94571 HC_gene_4915_tx_7 1 - 91825 94571 . 2 1225,1443 0,1304 -chrX 91919 93365 HC_gene_4915_tx_2 3 - 91919 93365 . 1 1447 0 -chrX 91919 94041 HC_gene_4915_tx_8 1 - 91919 94041 . 1 2123 0 -chrX 91919 94424 HC_gene_4915_tx_9 1 - 91919 94424 . 1 2506 0 -chrX 91919 94571 HC_gene_4915_tx_10 6 - 91919 94571 . 1 2653 0 -chrX 91919 94698 HC_gene_4915_tx_11 1 - 91919 94698 . 1 2780 0 -chrX 92092 92798 LC_gene_4623_tx_1 1 + 92092 92798 . 1 707 0 -chrX 94976 96166 HC_gene_4624_tx_1 152 + 94976 96166 . 1 1191 0 -chrX 95159 96166 HC_gene_4624_tx_2 10 + 95159 96166 . 1 1008 0 -chrX 95245 96166 HC_gene_4624_tx_3 21 + 95245 96166 . 1 922 0 -chrX 95456 96166 HC_gene_4624_tx_4 41 + 95456 96166 . 1 711 0 -chrX 95508 96166 HC_gene_4624_tx_5 14 + 95508 96166 . 1 659 0 -chrX 95813 96166 HC_gene_4624_tx_6 37 + 95813 96166 . 1 354 0 -chrX 95989 96540 HC_gene_4916_tx_1 226 - 95989 96540 . 1 552 0 -chrX 96140 96540 HC_gene_4916_tx_2 25 - 96140 96540 . 1 401 0 -chrX 96663 96939 LC_gene_4625_tx_1 1 + 96663 96939 . 1 277 0 -chrX 96753 97900 MC_gene_4917_tx_1 1 - 96753 97900 . 1 1148 0 -chrX 96838 97090 MC_gene_4917_tx_2 1 - 96838 97090 . 1 253 0 -chrX 97708 99505 HC_gene_4626_tx_1 10 + 97708 99505 . 1 1798 0 -chrX 97708 99611 HC_gene_4626_tx_2 16 + 97708 99611 . 1 1904 0 -chrX 97878 99505 HC_gene_4626_tx_3 1 + 97878 99505 . 2 173,1377 0,251 -chrX 97878 99505 HC_gene_4626_tx_4 2 + 97878 99505 . 1 1628 0 -chrX 97878 99611 HC_gene_4626_tx_5 2 + 97878 99611 . 1 1734 0 -chrX 98336 99505 HC_gene_4626_tx_6 3 + 98336 99505 . 1 1170 0 -chrX 98336 99611 HC_gene_4626_tx_7 1 + 98336 99611 . 1 1276 0 -chrX 98545 99505 HC_gene_4626_tx_8 2 + 98545 99505 . 1 961 0 -chrX 98545 99611 HC_gene_4626_tx_9 2 + 98545 99611 . 1 1067 0 -chrX 99039 99402 MC_gene_4918_tx_1 1 - 99039 99402 . 1 364 0 -chrX 99586 100039 HC_gene_4919_tx_1 6 - 99586 100039 . 1 454 0 -chrX 99586 100340 HC_gene_4919_tx_2 9 - 99586 100340 . 1 755 0 -chrX 99586 100506 HC_gene_4919_tx_3 8 - 99586 100506 . 1 921 0 -chrX 99586 100717 HC_gene_4919_tx_4 3 - 99586 100717 . 1 1132 0 -chrX 99586 100904 HC_gene_4919_tx_5 1 - 99586 100904 . 2 187,566 0,753 -chrX 99586 100927 HC_gene_4919_tx_6 77 - 99586 100927 . 1 1342 0 -chrX 99586 100927 HC_gene_4919_tx_7 1 - 99586 100927 . 2 1004,271 0,1071 -chrX 99651 100674 LC_gene_4627_tx_1 1 + 99651 100674 . 1 1024 0 -chrX 101113 101669 MC_gene_4920_tx_1 1 - 101113 101669 . 1 557 0 -chrX 101122 101859 HC_gene_4628_tx_1 5 + 101122 101859 . 1 738 0 -chrX 102015 102829 HC_gene_4921_tx_1 10 - 102015 102829 . 1 815 0 -chrX 102015 103006 HC_gene_4921_tx_2 5 - 102015 103006 . 1 992 0 -chrX 102015 104321 HC_gene_4921_tx_3 2 - 102015 104321 . 1 2307 0 -chrX 102015 104522 HC_gene_4921_tx_4 16 - 102015 104522 . 1 2508 0 -chrX 102015 104522 HC_gene_4921_tx_5 1 - 102015 104522 . 2 265,1619 0,889 -chrX 102015 104522 HC_gene_4921_tx_6 1 - 102015 104522 . 2 764,1688 0,820 -chrX 102015 104522 HC_gene_4921_tx_7 1 - 102015 104522 . 2 1150,1268 0,1240 -chrX 103202 104321 HC_gene_4921_tx_8 1 - 103202 104321 . 1 1120 0 -chrX 103202 104522 HC_gene_4921_tx_9 2 - 103202 104522 . 1 1321 0 -chrX 104957 106202 HC_gene_4629_tx_1 161 + 104957 106202 . 1 1246 0 -chrX 104957 106202 HC_gene_4629_tx_2 1 + 104957 106202 . 2 247,952 0,294 -chrX 104957 106202 HC_gene_4629_tx_3 1 + 104957 106202 . 2 583,605 0,641 -chrX 104957 106202 HC_gene_4629_tx_4 1 + 104957 106202 . 2 121,828 0,418 -chrX 104957 106202 HC_gene_4629_tx_5 1 + 104957 106202 . 2 74,910 0,336 -chrX 105164 106202 HC_gene_4629_tx_6 50 + 105164 106202 . 1 1039 0 -chrX 105276 106202 HC_gene_4629_tx_7 7 + 105276 106202 . 1 927 0 -chrX 105380 106202 HC_gene_4629_tx_8 76 + 105380 106202 . 1 823 0 -chrX 105380 106202 HC_gene_4629_tx_9 1 + 105380 106202 . 2 48,619 0,204 -chrX 105380 106202 HC_gene_4629_tx_10 1 + 105380 106202 . 2 252,512 0,311 -chrX 105693 106049 MC_gene_4922_tx_1 1 - 105693 106049 . 1 357 0 -chrX 105747 106202 HC_gene_4629_tx_11 61 + 105747 106202 . 1 456 0 -chrX 106378 106881 HC_gene_4630_tx_1 637 + 106378 106881 . 1 504 0 -chrX 106567 106881 HC_gene_4630_tx_2 43 + 106567 106881 . 1 315 0 -chrX 106858 107221 HC_gene_4923_tx_1 4 - 106858 107221 . 1 364 0 -chrX 106858 107491 HC_gene_4923_tx_2 5 - 106858 107491 . 1 634 0 -chrX 106858 108012 HC_gene_4923_tx_3 2 - 106858 108012 . 1 1155 0 -chrX 106858 108146 HC_gene_4923_tx_4 3 - 106858 108146 . 1 1289 0 -chrX 106858 108235 HC_gene_4923_tx_5 3 - 106858 108235 . 1 1378 0 -chrX 106858 108657 HC_gene_4923_tx_6 3 - 106858 108657 . 1 1800 0 -chrX 106858 109099 HC_gene_4923_tx_7 1 - 106858 109099 . 1 2242 0 -chrX 106858 109508 HC_gene_4923_tx_8 14 - 106858 109508 . 1 2651 0 -chrX 106858 109853 HC_gene_4923_tx_9 1 - 106858 109853 . 1 2996 0 -chrX 109533 109853 HC_gene_4923_tx_10 1 - 109533 109853 . 1 321 0 -chrX 109754 110360 HC_gene_4924_tx_1 1 - 109754 110360 . 1 607 0 -chrX 109754 110704 HC_gene_4924_tx_3 1 - 109754 110704 . 1 951 0 -chrX 109754 111151 HC_gene_4924_tx_4 1 - 109754 111151 . 1 1398 0 -chrX 109754 111379 HC_gene_4924_tx_5 2 - 109754 111379 . 1 1626 0 -chrX 109823 110360 HC_gene_4924_tx_2 2 - 109823 110360 . 1 538 0 -chrX 109823 110403 MC_gene_4631_tx_1 1 + 109823 110403 . 1 581 0 -chrX 109823 110704 HC_gene_4924_tx_6 5 - 109823 110704 . 1 882 0 -chrX 109823 110881 HC_gene_4924_tx_7 3 - 109823 110881 . 1 1059 0 -chrX 109823 111082 HC_gene_4924_tx_8 1 - 109823 111082 . 1 1260 0 -chrX 109823 111151 HC_gene_4924_tx_9 3 - 109823 111151 . 1 1329 0 -chrX 109823 111341 HC_gene_4924_tx_10 1 - 109823 111341 . 1 1519 0 -chrX 109823 111357 HC_gene_4924_tx_11 1 - 109823 111357 . 1 1535 0 -chrX 109823 111362 HC_gene_4924_tx_12 1 - 109823 111362 . 1 1540 0 -chrX 109823 111366 HC_gene_4924_tx_13 1 - 109823 111366 . 1 1544 0 -chrX 109823 111379 HC_gene_4924_tx_14 1 - 109823 111379 . 2 729,769 0,788 -chrX 109823 111379 HC_gene_4924_tx_15 4 - 109823 111379 . 1 1557 0 -chrX 109960 110399 MC_gene_4631_tx_2 1 + 109960 110399 . 1 440 0 -chrX 111393 112241 MC_gene_4632_tx_1 1 + 111393 112241 . 1 849 0 -chrX 111580 113760 MC_gene_4633_tx_1 1 + 111580 113760 . 1 2181 0 -chrX 111605 113414 HC_gene_4925_tx_1 9 - 111605 113414 . 1 1810 0 -chrX 113763 115010 HC_gene_4926_tx_1 3 - 113763 115010 . 1 1248 0 -chrX 113763 115679 HC_gene_4926_tx_2 17 - 113763 115679 . 1 1917 0 -chrX 115883 116472 HC_gene_4927_tx_1 1 - 115883 116472 . 1 590 0 -chrX 116487 117951 HC_gene_4634_tx_1 1 + 116487 117951 . 1 1465 0 -chrX 116628 116943 HC_gene_4928_tx_1 2 - 116628 116943 . 1 316 0 -chrX 116628 117047 HC_gene_4928_tx_2 25 - 116628 117047 . 1 420 0 -chrX 116686 117951 HC_gene_4634_tx_2 1 + 116686 117951 . 1 1266 0 -chrX 117102 117682 MC_gene_4929_tx_1 1 - 117102 117682 . 1 581 0 -chrX 117225 117899 HC_gene_4634_tx_3 5 + 117225 117899 . 1 675 0 -chrX 117225 117951 HC_gene_4634_tx_4 23 + 117225 117951 . 1 727 0 -chrX 117338 117951 HC_gene_4634_tx_5 4 + 117338 117951 . 1 614 0 -chrX 117454 117951 HC_gene_4634_tx_6 2 + 117454 117951 . 1 498 0 -chrX 117826 118849 HC_gene_4930_tx_1 19 - 117826 118849 . 1 1024 0 -chrX 117870 118957 HC_gene_4635_tx_1 2 + 117870 118957 . 1 1088 0 -chrX 118827 119123 HC_gene_4931_tx_1 1 - 118827 119123 . 1 297 0 -chrX 118827 119124 HC_gene_4931_tx_2 9 - 118827 119124 . 1 298 0 -chrX 118827 119141 HC_gene_4931_tx_3 1 - 118827 119141 . 1 315 0 -chrX 119510 122007 HC_gene_4636_tx_1 1 + 119510 122007 . 1 2498 0 -chrX 119510 122007 HC_gene_4636_tx_2 1 + 119510 122007 . 2 829,780 0,1718 -chrX 120394 122007 HC_gene_4636_tx_3 2957 + 120394 122007 . 1 1614 0 -chrX 120394 122007 HC_gene_4636_tx_4 1 + 120394 122007 . 2 122,1302 0,312 -chrX 120394 122007 HC_gene_4636_tx_5 1 + 120394 122007 . 2 512,1026 0,588 -chrX 120394 122007 HC_gene_4636_tx_6 1 + 120394 122007 . 2 167,1309 0,305 -chrX 120394 122007 HC_gene_4636_tx_7 1 + 120394 122007 . 2 409,1084 0,530 -chrX 120394 122007 HC_gene_4636_tx_8 3 + 120394 122007 . 2 98,1476 0,138 -chrX 120394 122007 HC_gene_4636_tx_9 1 + 120394 122007 . 2 122,1425 0,189 -chrX 120394 122007 HC_gene_4636_tx_10 1 + 120394 122007 . 2 1073,479 0,1135 -chrX 120394 122007 HC_gene_4636_tx_11 2 + 120394 122007 . 2 98,1365 0,249 -chrX 120394 122007 HC_gene_4636_tx_12 1 + 120394 122007 . 2 111,1272 0,342 -chrX 120394 122007 HC_gene_4636_tx_13 1 + 120394 122007 . 2 1502,63 0,1551 -chrX 120394 122007 HC_gene_4636_tx_14 1 + 120394 122007 . 2 680,840 0,774 -chrX 120394 122007 HC_gene_4636_tx_15 1 + 120394 122007 . 3 122,455,771 0,318,843 -chrX 120394 122007 HC_gene_4636_tx_16 1 + 120394 122007 . 2 83,1440 0,174 -chrX 120394 122007 HC_gene_4636_tx_17 1 + 120394 122007 . 2 1082,383 0,1231 -chrX 120394 122007 HC_gene_4636_tx_18 1 + 120394 122007 . 2 851,669 0,945 -chrX 120394 122007 HC_gene_4636_tx_19 3 + 120394 122007 . 2 1502,57 0,1557 -chrX 120394 122007 HC_gene_4636_tx_20 1 + 120394 122007 . 2 83,1458 0,156 -chrX 120394 122007 HC_gene_4636_tx_21 1 + 120394 122007 . 2 329,1020 0,594 -chrX 120394 122007 HC_gene_4636_tx_22 2 + 120394 122007 . 2 272,1272 0,342 -chrX 120394 122007 HC_gene_4636_tx_23 1 + 120394 122007 . 2 287,1253 0,361 -chrX 120394 122007 HC_gene_4636_tx_24 1 + 120394 122007 . 2 83,1433 0,181 -chrX 120394 122007 HC_gene_4636_tx_25 1 + 120394 122007 . 2 189,1299 0,315 -chrX 120394 122007 HC_gene_4636_tx_26 1 + 120394 122007 . 2 54,1253 0,361 -chrX 120394 122007 HC_gene_4636_tx_27 1 + 120394 122007 . 2 83,1368 0,246 -chrX 120394 122007 HC_gene_4636_tx_28 1 + 120394 122007 . 2 111,1395 0,219 -chrX 120394 122007 HC_gene_4636_tx_29 1 + 120394 122007 . 2 218,1296 0,318 -chrX 120394 122007 HC_gene_4636_tx_30 1 + 120394 122007 . 3 440,332,597 0,615,1017 -chrX 120394 122007 HC_gene_4636_tx_31 1 + 120394 122007 . 2 1487,54 0,1560 -chrX 120394 122007 HC_gene_4636_tx_32 1 + 120394 122007 . 2 407,1041 0,573 -chrX 120394 122007 HC_gene_4636_tx_33 1 + 120394 122007 . 2 314,1190 0,424 -chrX 120394 122007 HC_gene_4636_tx_34 1 + 120394 122007 . 2 386,1158 0,456 -chrX 120394 122007 HC_gene_4636_tx_35 1 + 120394 122007 . 2 336,1095 0,519 -chrX 120394 122007 HC_gene_4636_tx_36 1 + 120394 122007 . 2 977,479 0,1135 -chrX 120394 122007 HC_gene_4636_tx_37 1 + 120394 122007 . 2 111,1454 0,160 -chrX 120394 122007 HC_gene_4636_tx_38 1 + 120394 122007 . 2 98,1095 0,519 -chrX 120394 122007 HC_gene_4636_tx_39 1 + 120394 122007 . 2 1510,57 0,1557 -chrX 120394 122007 HC_gene_4636_tx_40 1 + 120394 122007 . 2 344,1167 0,447 -chrX 120394 122007 HC_gene_4636_tx_41 1 + 120394 122007 . 2 59,1143 0,471 -chrX 120394 122007 HC_gene_4636_tx_42 1 + 120394 122007 . 2 105,1158 0,456 -chrX 120394 122007 HC_gene_4636_tx_43 2 + 120394 122007 . 2 941,636 0,978 -chrX 120394 122007 HC_gene_4636_tx_44 1 + 120394 122007 . 2 548,780 0,834 -chrX 120394 122007 HC_gene_4636_tx_45 1 + 120394 122007 . 2 298,1253 0,361 -chrX 120394 122007 HC_gene_4636_tx_46 1 + 120394 122007 . 2 947,479 0,1135 -chrX 120394 122007 HC_gene_4636_tx_47 1 + 120394 122007 . 2 95,1392 0,222 -chrX 120394 122007 HC_gene_4636_tx_48 1 + 120394 122007 . 2 71,1458 0,156 -chrX 120394 122007 HC_gene_4636_tx_49 1 + 120394 122007 . 2 292,942 0,672 -chrX 120394 122007 HC_gene_4636_tx_50 1 + 120394 122007 . 2 1487,70 0,1544 -chrX 120394 122007 HC_gene_4636_tx_51 2 + 120394 122007 . 2 98,1425 0,189 -chrX 120394 122007 HC_gene_4636_tx_52 1 + 120394 122007 . 2 199,1026 0,588 -chrX 120394 122007 HC_gene_4636_tx_53 1 + 120394 122007 . 2 95,1272 0,342 -chrX 120394 122007 HC_gene_4636_tx_54 1 + 120394 122007 . 2 809,749 0,865 -chrX 120394 122007 HC_gene_4636_tx_55 1 + 120394 122007 . 2 111,1425 0,189 -chrX 120394 122007 HC_gene_4636_tx_56 1 + 120394 122007 . 2 513,747 0,867 -chrX 120394 122007 HC_gene_4636_tx_57 1 + 120394 122007 . 2 386,1071 0,543 -chrX 120394 122007 HC_gene_4636_tx_58 1 + 120394 122007 . 2 697,860 0,754 -chrX 120394 122007 HC_gene_4636_tx_59 1 + 120394 122007 . 2 512,897 0,717 -chrX 120394 122007 HC_gene_4636_tx_60 1 + 120394 122007 . 2 112,1095 0,519 -chrX 120394 122007 HC_gene_4636_tx_61 1 + 120394 122007 . 2 314,1254 0,360 -chrX 120394 122007 HC_gene_4636_tx_62 1 + 120394 122007 . 2 129,291 0,1323 -chrX 120394 122007 HC_gene_4636_tx_63 1 + 120394 122007 . 2 112,897 0,717 -chrX 120394 122007 HC_gene_4636_tx_64 1 + 120394 122007 . 2 341,479 0,1135 -chrX 120394 122007 HC_gene_4636_tx_65 1 + 120394 122007 . 2 236,1215 0,399 -chrX 120394 122007 HC_gene_4636_tx_66 1 + 120394 122007 . 2 1305,202 0,1412 -chrX 120394 122007 HC_gene_4636_tx_67 1 + 120394 122007 . 2 938,642 0,972 -chrX 120394 122007 HC_gene_4636_tx_68 1 + 120394 122007 . 2 272,1170 0,444 -chrX 120394 122007 HC_gene_4636_tx_69 1 + 120394 122007 . 2 977,553 0,1061 -chrX 120394 122007 HC_gene_4636_tx_70 1 + 120394 122007 . 2 598,608 0,1006 -chrX 120394 122007 HC_gene_4636_tx_71 1 + 120394 122007 . 2 386,1167 0,447 -chrX 120394 122007 HC_gene_4636_tx_72 1 + 120394 122007 . 2 545,999 0,615 -chrX 120394 122007 HC_gene_4636_tx_73 1 + 120394 122007 . 2 236,1281 0,333 -chrX 120394 122007 HC_gene_4636_tx_74 1 + 120394 122007 . 2 521,1020 0,594 -chrX 120394 122007 HC_gene_4636_tx_75 1 + 120394 122007 . 3 342,208,549 0,602,1065 -chrX 120394 122007 HC_gene_4636_tx_76 1 + 120394 122007 . 3 344,230,942 0,387,672 -chrX 120394 122007 HC_gene_4636_tx_77 1 + 120394 122007 . 2 851,523 0,1091 -chrX 120394 122007 HC_gene_4636_tx_78 1 + 120394 122007 . 2 668,636 0,978 -chrX 120394 122007 HC_gene_4636_tx_79 1 + 120394 122007 . 2 866,642 0,972 -chrX 120394 122007 HC_gene_4636_tx_80 1 + 120394 122007 . 2 668,885 0,729 -chrX 120394 122007 HC_gene_4636_tx_81 1 + 120394 122007 . 2 512,1023 0,591 -chrX 120394 122007 HC_gene_4636_tx_82 1 + 120394 122007 . 2 314,1167 0,447 -chrX 120394 122007 HC_gene_4636_tx_83 1 + 120394 122007 . 2 341,999 0,615 -chrX 120394 122007 HC_gene_4636_tx_84 2 + 120394 122007 . 2 452,1089 0,525 -chrX 120394 122007 HC_gene_4636_tx_85 2 + 120394 122007 . 2 887,672 0,942 -chrX 120394 122007 HC_gene_4636_tx_86 1 + 120394 122007 . 2 383,907 0,707 -chrX 120394 122007 HC_gene_4636_tx_87 1 + 120394 122007 . 2 421,920 0,694 -chrX 120394 122007 HC_gene_4636_tx_88 1 + 120394 122007 . 2 458,1020 0,594 -chrX 120394 122007 HC_gene_4636_tx_89 1 + 120394 122007 . 2 397,944 0,670 -chrX 120394 122007 HC_gene_4636_tx_90 1 + 120394 122007 . 2 427,1115 0,499 -chrX 120394 122007 HC_gene_4636_tx_91 1 + 120394 122007 . 2 866,606 0,1008 -chrX 120394 122007 HC_gene_4636_tx_92 1 + 120394 122007 . 2 452,885 0,729 -chrX 120394 122007 HC_gene_4636_tx_93 1 + 120394 122007 . 2 1136,374 0,1240 -chrX 120394 122007 HC_gene_4636_tx_94 1 + 120394 122007 . 2 1124,454 0,1160 -chrX 120394 122007 HC_gene_4636_tx_95 1 + 120394 122007 . 2 542,828 0,786 -chrX 120394 122007 HC_gene_4636_tx_96 1 + 120394 122007 . 2 542,771 0,843 -chrX 120394 122007 HC_gene_4636_tx_97 1 + 120394 122007 . 2 593,954 0,660 -chrX 120394 122007 HC_gene_4636_tx_98 1 + 120394 122007 . 2 572,970 0,644 -chrX 120394 122007 HC_gene_4636_tx_99 1 + 120394 122007 . 2 1305,226 0,1388 -chrX 120394 122007 HC_gene_4636_tx_100 1 + 120394 122007 . 2 567,747 0,867 -chrX 120394 122007 HC_gene_4636_tx_101 1 + 120394 122007 . 2 593,897 0,717 -chrX 120411 122007 HC_gene_4636_tx_102 1 + 120411 122007 . 2 1032,479 0,1118 -chrX 120411 122007 HC_gene_4636_tx_103 1 + 120411 122007 . 2 1032,470 0,1127 -chrX 120414 122007 HC_gene_4636_tx_104 1 + 120414 122007 . 2 750,771 0,823 -chrX 120429 122007 HC_gene_4636_tx_105 1 + 120429 122007 . 2 735,592 0,987 -chrX 120437 122007 HC_gene_4636_tx_106 1 + 120437 122007 . 2 613,840 0,731 -chrX 120630 122007 HC_gene_4636_tx_107 1 + 120630 122007 . 2 420,885 0,493 -chrX 120691 122007 HC_gene_4636_tx_108 1 + 120691 122007 . 2 473,780 0,537 -chrX 120728 122007 HC_gene_4636_tx_109 1 + 120728 122007 . 2 250,942 0,338 -chrX 120783 122007 HC_gene_4636_tx_110 1 + 120783 122007 . 3 273,11,496 0,388,729 -chrX 120883 122007 HC_gene_4636_tx_111 1 + 120883 122007 . 2 95,942 0,183 -chrX 120966 122007 HC_gene_4636_tx_112 77 + 120966 122007 . 1 1042 0 -chrX 120966 122007 HC_gene_4636_tx_113 1 + 120966 122007 . 2 112,840 0,202 -chrX 121038 122007 HC_gene_4636_tx_114 338 + 121038 122007 . 1 970 0 -chrX 121038 122007 HC_gene_4636_tx_115 1 + 121038 122007 . 2 222,636 0,334 -chrX 121038 122007 HC_gene_4636_tx_116 1 + 121038 122007 . 2 42,828 0,142 -chrX 121038 122007 HC_gene_4636_tx_117 1 + 121038 122007 . 2 36,642 0,328 -chrX 121038 122007 HC_gene_4636_tx_118 2 + 121038 122007 . 2 69,780 0,190 -chrX 121038 122007 HC_gene_4636_tx_119 1 + 121038 122007 . 2 81,771 0,199 -chrX 121038 122007 HC_gene_4636_tx_120 1 + 121038 122007 . 2 164,747 0,223 -chrX 121039 121850 LC_gene_4932_tx_1 1 - 121039 121850 . 1 812 0 -chrX 121152 122007 HC_gene_4636_tx_121 631 + 121152 122007 . 1 856 0 -chrX 121152 122007 HC_gene_4636_tx_122 1 + 121152 122007 . 2 24,771 0,85 -chrX 121152 122007 HC_gene_4636_tx_123 1 + 121152 122007 . 2 94,597 0,259 -chrX 121152 122007 HC_gene_4636_tx_124 1 + 121152 122007 . 2 303,454 0,402 -chrX 121152 122007 HC_gene_4636_tx_125 1 + 121152 122007 . 2 158,554 0,302 -chrX 121152 122007 HC_gene_4636_tx_126 1 + 121152 122007 . 2 271,502 0,354 -chrX 121152 122007 HC_gene_4636_tx_127 1 + 121152 122007 . 2 577,188 0,668 -chrX 121432 122007 HC_gene_4636_tx_128 473 + 121432 122007 . 1 576 0 -chrX 121432 122007 HC_gene_4636_tx_129 1 + 121432 122007 . 2 419,84 0,492 -chrX 121556 122007 HC_gene_4636_tx_130 425 + 121556 122007 . 1 452 0 -chrX 122055 122663 HC_gene_4933_tx_1 258 - 122055 122663 . 1 609 0 -chrX 122055 122755 HC_gene_4933_tx_2 275 - 122055 122755 . 1 701 0 -chrX 122055 122991 HC_gene_4933_tx_3 2012 - 122055 122991 . 1 937 0 -chrX 122303 123431 LC_gene_4637_tx_1 1 + 122303 123431 . 1 1129 0 -chrX 123687 126397 HC_gene_4934_tx_1 53 - 123687 126397 . 1 2711 0 -chrX 123687 126397 HC_gene_4934_tx_2 1 - 123687 126397 . 2 1781,867 0,1844 -chrX 123687 126397 HC_gene_4934_tx_3 1 - 123687 126397 . 2 1240,1398 0,1313 -chrX 123687 126397 HC_gene_4934_tx_4 1 - 123687 126397 . 2 1783,745 0,1966 -chrX 123687 126397 HC_gene_4934_tx_5 1 - 123687 126397 . 2 1255,1377 0,1334 -chrX 123687 126397 HC_gene_4934_tx_6 1 - 123687 126397 . 2 1132,1521 0,1190 -chrX 123687 126397 HC_gene_4934_tx_7 1 - 123687 126397 . 2 616,1377 0,1334 -chrX 123687 126397 HC_gene_4934_tx_8 1 - 123687 126397 . 2 835,1205 0,1506 -chrX 123768 126496 HC_gene_4638_tx_1 3 + 123768 126496 . 1 2729 0 -chrX 126462 129036 HC_gene_4935_tx_1 1 - 126462 129036 . 2 1901,583 0,1992 -chrX 126462 129036 HC_gene_4935_tx_2 17 - 126462 129036 . 1 2575 0 -chrX 126462 129036 HC_gene_4935_tx_3 1 - 126462 129036 . 2 1083,1363 0,1212 -chrX 126672 129123 HC_gene_4639_tx_1 2 + 126672 129123 . 1 2452 0 -chrX 126765 127214 HC_gene_4639_tx_2 3 + 126765 127214 . 1 450 0 -chrX 129124 129944 HC_gene_4936_tx_1 6 - 129124 129944 . 1 821 0 -chrX 129124 130822 HC_gene_4936_tx_2 26 - 129124 130822 . 1 1699 0 -chrX 129124 130822 HC_gene_4936_tx_3 1 - 129124 130822 . 2 670,688 0,1011 -chrX 130919 131515 HC_gene_4937_tx_1 3 - 130919 131515 . 1 597 0 -chrX 130919 134026 HC_gene_4937_tx_2 3 - 130919 134026 . 1 3108 0 -chrX 131042 131515 HC_gene_4937_tx_6 16 - 131042 131515 . 1 474 0 -chrX 131042 134026 HC_gene_4937_tx_3 15 - 131042 134026 . 1 2985 0 -chrX 131042 134026 HC_gene_4937_tx_4 1 - 131042 134026 . 2 1157,629 0,2356 -chrX 131460 134026 HC_gene_4937_tx_5 1 - 131460 134026 . 1 2567 0 -chrX 134246 136156 MC_gene_4640_tx_1 1 + 134246 136156 . 1 1911 0 -chrX 136299 136690 HC_gene_4938_tx_1 47 - 136299 136690 . 1 392 0 -chrX 136299 136807 HC_gene_4938_tx_2 723 - 136299 136807 . 1 509 0 -chrX 136936 137094 HC_gene_4641_tx_1 2 + 136936 137094 . 1 159 0 -chrX 137334 139429 HC_gene_4642_tx_1 9 + 137334 139429 . 1 2096 0 -chrX 139363 140101 HC_gene_4939_tx_1 7 - 139363 140101 . 1 739 0 -chrX 139464 139950 HC_gene_4939_tx_3 1 - 139464 139950 . 1 487 0 -chrX 139464 140101 HC_gene_4939_tx_2 3 - 139464 140101 . 1 638 0 -chrX 140221 140903 LC_gene_4940_tx_1 1 - 140221 140903 . 1 683 0 -chrX 140379 141368 HC_gene_4643_tx_1 248 + 140379 141368 . 1 990 0 -chrX 140379 141368 HC_gene_4643_tx_2 1 + 140379 141368 . 2 152,767 0,223 -chrX 140379 141368 HC_gene_4643_tx_3 1 + 140379 141368 . 2 42,654 0,336 -chrX 140379 141368 HC_gene_4643_tx_4 1 + 140379 141368 . 2 140,776 0,214 -chrX 140379 141368 HC_gene_4643_tx_5 1 + 140379 141368 . 2 605,335 0,655 -chrX 140379 141619 HC_gene_4643_tx_7 2 + 140379 141619 . 1 1241 0 -chrX 140388 141368 HC_gene_4643_tx_6 1 + 140388 141368 . 2 563,335 0,646 -chrX 140592 141368 HC_gene_4643_tx_8 32 + 140592 141368 . 1 777 0 -chrX 140650 141368 HC_gene_4643_tx_9 27 + 140650 141368 . 1 719 0 -chrX 140710 141368 HC_gene_4643_tx_10 38 + 140710 141368 . 1 659 0 -chrX 140815 141368 HC_gene_4643_tx_11 79 + 140815 141368 . 1 554 0 -chrX 140815 141368 HC_gene_4643_tx_12 1 + 140815 141368 . 2 169,340 0,214 -chrX 140815 141619 HC_gene_4643_tx_13 1 + 140815 141619 . 1 805 0 -chrX 140932 141368 HC_gene_4643_tx_14 14 + 140932 141368 . 1 437 0 -chrX 141186 142635 HC_gene_4941_tx_1 1 - 141186 142635 . 1 1450 0 -chrX 141247 142635 HC_gene_4941_tx_2 4 - 141247 142635 . 1 1389 0 -chrX 141871 142884 MC_gene_4644_tx_1 1 + 141871 142884 . 1 1014 0 -chrX 142822 143692 LC_gene_4942_tx_1 1 - 142822 143692 . 1 871 0 -chrX 143166 144609 HC_gene_4645_tx_1 4 + 143166 144609 . 1 1444 0 -chrX 143166 144922 HC_gene_4645_tx_2 6 + 143166 144922 . 1 1757 0 -chrX 144138 144903 HC_gene_4943_tx_1 4 - 144138 144903 . 1 766 0 -chrX 144184 144609 HC_gene_4645_tx_3 1 + 144184 144609 . 1 426 0 -chrX 144184 144922 HC_gene_4645_tx_4 2 + 144184 144922 . 1 739 0 -chrX 144221 144903 HC_gene_4943_tx_2 4 - 144221 144903 . 1 683 0 -chrX 144431 144903 HC_gene_4943_tx_3 19 - 144431 144903 . 1 473 0 -chrX 145124 146110 HC_gene_4646_tx_1 92 + 145124 146110 . 1 987 0 -chrX 145124 146110 HC_gene_4646_tx_2 1 + 145124 146110 . 2 233,406 0,581 -chrX 145124 146110 HC_gene_4646_tx_3 1 + 145124 146110 . 2 115,782 0,205 -chrX 145623 146110 HC_gene_4646_tx_4 9 + 145623 146110 . 1 488 0 -chrX 145623 146110 HC_gene_4646_tx_5 1 + 145623 146110 . 2 163,220 0,268 -chrX 145691 146110 HC_gene_4646_tx_6 9 + 145691 146110 . 1 420 0 -chrX 145900 146795 MC_gene_4944_tx_1 1 - 145900 146795 . 1 896 0 -chrX 146325 146902 HC_gene_4647_tx_1 22 + 146325 146902 . 1 578 0 -chrX 146479 146902 HC_gene_4647_tx_2 4 + 146479 146902 . 1 424 0 -chrX 147070 147713 HC_gene_4648_tx_1 2 + 147070 147713 . 1 644 0 -chrX 147070 147715 HC_gene_4648_tx_2 1 + 147070 147715 . 1 646 0 -chrX 147070 147716 HC_gene_4648_tx_3 2 + 147070 147716 . 1 647 0 -chrX 147070 147719 HC_gene_4648_tx_4 2 + 147070 147719 . 1 650 0 -chrX 147070 147720 HC_gene_4648_tx_5 1 + 147070 147720 . 1 651 0 -chrX 147070 147723 HC_gene_4648_tx_6 2 + 147070 147723 . 1 654 0 -chrX 147070 147724 HC_gene_4648_tx_7 4 + 147070 147724 . 1 655 0 -chrX 147070 147725 HC_gene_4648_tx_8 1 + 147070 147725 . 1 656 0 -chrX 147070 147728 HC_gene_4648_tx_9 1 + 147070 147728 . 1 659 0 -chrX 147070 147739 HC_gene_4648_tx_10 3 + 147070 147739 . 1 670 0 -chrX 147070 147746 HC_gene_4648_tx_11 1 + 147070 147746 . 1 677 0 -chrX 147070 147750 HC_gene_4648_tx_12 2 + 147070 147750 . 1 681 0 -chrX 147070 147756 HC_gene_4648_tx_13 1 + 147070 147756 . 1 687 0 -chrX 147070 147757 HC_gene_4648_tx_14 2 + 147070 147757 . 1 688 0 -chrX 147070 147757 HC_gene_4648_tx_15 1 + 147070 147757 . 2 89,541 0,147 -chrX 147070 147758 HC_gene_4648_tx_16 2 + 147070 147758 . 1 689 0 -chrX 147070 147765 HC_gene_4648_tx_17 3 + 147070 147765 . 1 696 0 -chrX 147070 147766 HC_gene_4648_tx_18 17 + 147070 147766 . 1 697 0 -chrX 147070 147767 HC_gene_4648_tx_19 1 + 147070 147767 . 1 698 0 -chrX 147070 147768 HC_gene_4648_tx_20 2 + 147070 147768 . 1 699 0 -chrX 147070 147772 HC_gene_4648_tx_21 3 + 147070 147772 . 1 703 0 -chrX 147070 147773 HC_gene_4648_tx_22 1 + 147070 147773 . 1 704 0 -chrX 147070 147774 HC_gene_4648_tx_23 2 + 147070 147774 . 1 705 0 -chrX 147070 147775 HC_gene_4648_tx_24 7 + 147070 147775 . 1 706 0 -chrX 147070 147777 HC_gene_4648_tx_25 1 + 147070 147777 . 1 708 0 -chrX 147070 147778 HC_gene_4648_tx_26 2 + 147070 147778 . 1 709 0 -chrX 147070 147780 HC_gene_4648_tx_27 13 + 147070 147780 . 1 711 0 -chrX 147070 147786 HC_gene_4648_tx_28 2 + 147070 147786 . 1 717 0 -chrX 147070 147788 HC_gene_4648_tx_29 2 + 147070 147788 . 1 719 0 -chrX 147070 147789 HC_gene_4648_tx_30 1 + 147070 147789 . 1 720 0 -chrX 147070 147792 HC_gene_4648_tx_31 2 + 147070 147792 . 1 723 0 -chrX 147070 147793 HC_gene_4648_tx_32 3 + 147070 147793 . 1 724 0 -chrX 147070 147799 HC_gene_4648_tx_33 2 + 147070 147799 . 1 730 0 -chrX 147070 147802 HC_gene_4648_tx_34 3 + 147070 147802 . 1 733 0 -chrX 147070 147803 HC_gene_4648_tx_35 3 + 147070 147803 . 1 734 0 -chrX 147070 147804 HC_gene_4648_tx_36 1 + 147070 147804 . 1 735 0 -chrX 147070 147810 HC_gene_4648_tx_37 1 + 147070 147810 . 1 741 0 -chrX 147070 147815 HC_gene_4648_tx_38 2 + 147070 147815 . 1 746 0 -chrX 147070 147816 HC_gene_4648_tx_39 3 + 147070 147816 . 1 747 0 -chrX 147070 147817 HC_gene_4648_tx_40 2 + 147070 147817 . 1 748 0 -chrX 147070 147820 HC_gene_4648_tx_41 1 + 147070 147820 . 1 751 0 -chrX 147070 147822 HC_gene_4648_tx_42 1 + 147070 147822 . 1 753 0 -chrX 147070 147824 HC_gene_4648_tx_43 2 + 147070 147824 . 1 755 0 -chrX 147070 147825 HC_gene_4648_tx_44 1 + 147070 147825 . 1 756 0 -chrX 147070 147826 HC_gene_4648_tx_45 2 + 147070 147826 . 1 757 0 -chrX 147070 147831 HC_gene_4648_tx_46 1 + 147070 147831 . 1 762 0 -chrX 147070 147836 HC_gene_4648_tx_47 1 + 147070 147836 . 1 767 0 -chrX 147070 147838 HC_gene_4648_tx_48 1 + 147070 147838 . 1 769 0 -chrX 147070 147839 HC_gene_4648_tx_49 1 + 147070 147839 . 1 770 0 -chrX 147070 147840 HC_gene_4648_tx_50 1 + 147070 147840 . 1 771 0 -chrX 147070 147844 HC_gene_4648_tx_51 4 + 147070 147844 . 1 775 0 -chrX 147070 147845 HC_gene_4648_tx_52 2 + 147070 147845 . 1 776 0 -chrX 147070 147850 HC_gene_4648_tx_53 2 + 147070 147850 . 1 781 0 -chrX 147070 147851 HC_gene_4648_tx_54 1 + 147070 147851 . 1 782 0 -chrX 147070 147852 HC_gene_4648_tx_55 2 + 147070 147852 . 1 783 0 -chrX 147070 147853 HC_gene_4648_tx_56 1 + 147070 147853 . 1 784 0 -chrX 147070 147854 HC_gene_4648_tx_57 1 + 147070 147854 . 1 785 0 -chrX 147070 147856 HC_gene_4648_tx_58 4 + 147070 147856 . 1 787 0 -chrX 147070 147857 HC_gene_4648_tx_59 2 + 147070 147857 . 1 788 0 -chrX 147070 147859 HC_gene_4648_tx_60 1 + 147070 147859 . 1 790 0 -chrX 147070 147860 HC_gene_4648_tx_61 2 + 147070 147860 . 1 791 0 -chrX 147070 147861 HC_gene_4648_tx_62 1 + 147070 147861 . 1 792 0 -chrX 147070 147862 HC_gene_4648_tx_63 1 + 147070 147862 . 1 793 0 -chrX 147070 147863 HC_gene_4648_tx_64 2 + 147070 147863 . 1 794 0 -chrX 147070 147864 HC_gene_4648_tx_65 9 + 147070 147864 . 1 795 0 -chrX 147070 147865 HC_gene_4648_tx_66 3 + 147070 147865 . 1 796 0 -chrX 147070 147866 HC_gene_4648_tx_67 11 + 147070 147866 . 1 797 0 -chrX 147070 147867 HC_gene_4648_tx_68 6 + 147070 147867 . 1 798 0 -chrX 147070 147868 HC_gene_4648_tx_69 2 + 147070 147868 . 1 799 0 -chrX 147070 147869 HC_gene_4648_tx_70 7 + 147070 147869 . 1 800 0 -chrX 147070 147869 HC_gene_4648_tx_71 1 + 147070 147869 . 2 54,419 0,381 -chrX 147070 147870 HC_gene_4648_tx_72 3 + 147070 147870 . 1 801 0 -chrX 147070 147872 HC_gene_4648_tx_73 1 + 147070 147872 . 1 803 0 -chrX 147070 147873 HC_gene_4648_tx_74 5 + 147070 147873 . 1 804 0 -chrX 147070 147874 HC_gene_4648_tx_75 4 + 147070 147874 . 1 805 0 -chrX 147070 147880 HC_gene_4648_tx_76 9 + 147070 147880 . 1 811 0 -chrX 147070 147881 HC_gene_4648_tx_77 1 + 147070 147881 . 1 812 0 -chrX 147070 147882 HC_gene_4648_tx_78 14 + 147070 147882 . 1 813 0 -chrX 147070 147883 HC_gene_4648_tx_79 2 + 147070 147883 . 1 814 0 -chrX 147070 147884 HC_gene_4648_tx_80 1 + 147070 147884 . 1 815 0 -chrX 147070 147886 HC_gene_4648_tx_81 4 + 147070 147886 . 1 817 0 -chrX 147070 147887 HC_gene_4648_tx_82 2 + 147070 147887 . 1 818 0 -chrX 147070 147889 HC_gene_4648_tx_83 3 + 147070 147889 . 1 820 0 -chrX 147070 147890 HC_gene_4648_tx_84 1 + 147070 147890 . 1 821 0 -chrX 147070 147891 HC_gene_4648_tx_85 8 + 147070 147891 . 1 822 0 -chrX 147070 147892 HC_gene_4648_tx_86 1 + 147070 147892 . 1 823 0 -chrX 147070 147894 HC_gene_4648_tx_87 2 + 147070 147894 . 1 825 0 -chrX 147070 147895 HC_gene_4648_tx_88 9 + 147070 147895 . 1 826 0 -chrX 147287 147714 HC_gene_4648_tx_89 1 + 147287 147714 . 1 428 0 -chrX 147287 147724 HC_gene_4648_tx_90 2 + 147287 147724 . 1 438 0 -chrX 147287 147728 HC_gene_4648_tx_91 1 + 147287 147728 . 1 442 0 -chrX 147287 147746 HC_gene_4648_tx_92 1 + 147287 147746 . 1 460 0 -chrX 147287 147766 HC_gene_4648_tx_93 1 + 147287 147766 . 1 480 0 -chrX 147287 147772 HC_gene_4648_tx_94 2 + 147287 147772 . 1 486 0 -chrX 147287 147780 HC_gene_4648_tx_95 1 + 147287 147780 . 1 494 0 -chrX 147287 147793 HC_gene_4648_tx_96 1 + 147287 147793 . 1 507 0 -chrX 147287 147796 HC_gene_4648_tx_97 1 + 147287 147796 . 1 510 0 -chrX 147287 147808 HC_gene_4648_tx_98 1 + 147287 147808 . 1 522 0 -chrX 147287 147816 HC_gene_4648_tx_99 1 + 147287 147816 . 1 530 0 -chrX 147287 147819 HC_gene_4648_tx_100 1 + 147287 147819 . 1 533 0 -chrX 147287 147821 HC_gene_4648_tx_101 1 + 147287 147821 . 1 535 0 -chrX 147287 147824 HC_gene_4648_tx_102 1 + 147287 147824 . 1 538 0 -chrX 147287 147825 HC_gene_4648_tx_103 1 + 147287 147825 . 1 539 0 -chrX 147287 147829 HC_gene_4648_tx_104 1 + 147287 147829 . 1 543 0 -chrX 147287 147839 HC_gene_4648_tx_105 1 + 147287 147839 . 1 553 0 -chrX 147287 147856 HC_gene_4648_tx_106 1 + 147287 147856 . 1 570 0 -chrX 147287 147857 HC_gene_4648_tx_107 1 + 147287 147857 . 1 571 0 -chrX 147287 147859 HC_gene_4648_tx_108 2 + 147287 147859 . 1 573 0 -chrX 147287 147863 HC_gene_4648_tx_109 2 + 147287 147863 . 1 577 0 -chrX 147287 147864 HC_gene_4648_tx_110 4 + 147287 147864 . 1 578 0 -chrX 147287 147866 HC_gene_4648_tx_111 1 + 147287 147866 . 1 580 0 -chrX 147287 147867 HC_gene_4648_tx_112 2 + 147287 147867 . 1 581 0 -chrX 147287 147871 HC_gene_4648_tx_113 1 + 147287 147871 . 1 585 0 -chrX 147287 147873 HC_gene_4648_tx_114 1 + 147287 147873 . 1 587 0 -chrX 147287 147874 HC_gene_4648_tx_115 1 + 147287 147874 . 1 588 0 -chrX 147287 147877 HC_gene_4648_tx_116 1 + 147287 147877 . 1 591 0 -chrX 147287 147880 HC_gene_4648_tx_117 1 + 147287 147880 . 1 594 0 -chrX 147287 147881 HC_gene_4648_tx_118 1 + 147287 147881 . 1 595 0 -chrX 147287 147882 HC_gene_4648_tx_119 5 + 147287 147882 . 1 596 0 -chrX 147287 147886 HC_gene_4648_tx_120 1 + 147287 147886 . 1 600 0 -chrX 147287 147891 HC_gene_4648_tx_121 3 + 147287 147891 . 1 605 0 -chrX 147401 147719 HC_gene_4648_tx_122 1 + 147401 147719 . 1 319 0 -chrX 147401 147721 HC_gene_4648_tx_123 1 + 147401 147721 . 1 321 0 -chrX 147401 147724 HC_gene_4648_tx_124 1 + 147401 147724 . 1 324 0 -chrX 147401 147727 HC_gene_4648_tx_125 1 + 147401 147727 . 1 327 0 -chrX 147401 147739 HC_gene_4648_tx_126 1 + 147401 147739 . 1 339 0 -chrX 147401 147769 HC_gene_4648_tx_127 1 + 147401 147769 . 1 369 0 -chrX 147401 147775 HC_gene_4648_tx_128 2 + 147401 147775 . 1 375 0 -chrX 147401 147780 HC_gene_4648_tx_129 2 + 147401 147780 . 1 380 0 -chrX 147401 147781 HC_gene_4648_tx_130 1 + 147401 147781 . 1 381 0 -chrX 147401 147782 HC_gene_4648_tx_131 1 + 147401 147782 . 1 382 0 -chrX 147401 147794 HC_gene_4648_tx_132 1 + 147401 147794 . 1 394 0 -chrX 147401 147796 HC_gene_4648_tx_133 1 + 147401 147796 . 1 396 0 -chrX 147401 147802 HC_gene_4648_tx_134 1 + 147401 147802 . 1 402 0 -chrX 147401 147804 HC_gene_4648_tx_135 1 + 147401 147804 . 1 404 0 -chrX 147401 147810 HC_gene_4648_tx_136 1 + 147401 147810 . 1 410 0 -chrX 147401 147816 HC_gene_4648_tx_137 1 + 147401 147816 . 1 416 0 -chrX 147401 147829 HC_gene_4648_tx_138 1 + 147401 147829 . 1 429 0 -chrX 147401 147831 HC_gene_4648_tx_139 1 + 147401 147831 . 1 431 0 -chrX 147401 147833 HC_gene_4648_tx_140 1 + 147401 147833 . 2 110,248 0,185 -chrX 147401 147838 HC_gene_4648_tx_141 1 + 147401 147838 . 1 438 0 -chrX 147401 147859 HC_gene_4648_tx_142 1 + 147401 147859 . 1 459 0 -chrX 147401 147860 HC_gene_4648_tx_143 1 + 147401 147860 . 1 460 0 -chrX 147401 147864 HC_gene_4648_tx_144 2 + 147401 147864 . 1 464 0 -chrX 147401 147865 HC_gene_4648_tx_145 1 + 147401 147865 . 1 465 0 -chrX 147401 147866 HC_gene_4648_tx_146 2 + 147401 147866 . 1 466 0 -chrX 147401 147871 HC_gene_4648_tx_147 1 + 147401 147871 . 1 471 0 -chrX 147401 147874 HC_gene_4648_tx_148 1 + 147401 147874 . 1 474 0 -chrX 147401 147880 HC_gene_4648_tx_149 3 + 147401 147880 . 1 480 0 -chrX 147401 147881 HC_gene_4648_tx_150 1 + 147401 147881 . 1 481 0 -chrX 147401 147882 HC_gene_4648_tx_151 5 + 147401 147882 . 1 482 0 -chrX 147401 147883 HC_gene_4648_tx_152 1 + 147401 147883 . 1 483 0 -chrX 147401 147884 HC_gene_4648_tx_153 1 + 147401 147884 . 1 484 0 -chrX 147401 147885 HC_gene_4648_tx_154 1 + 147401 147885 . 1 485 0 -chrX 147401 147886 HC_gene_4648_tx_155 2 + 147401 147886 . 1 486 0 -chrX 147401 147888 HC_gene_4648_tx_156 2 + 147401 147888 . 1 488 0 -chrX 147401 147890 HC_gene_4648_tx_157 1 + 147401 147890 . 1 490 0 -chrX 147401 147891 HC_gene_4648_tx_158 4 + 147401 147891 . 1 491 0 -chrX 147401 147895 HC_gene_4648_tx_159 1 + 147401 147895 . 1 495 0 -chrX 147809 148601 HC_gene_4945_tx_1 2 - 147809 148601 . 1 793 0 -chrX 147809 149152 HC_gene_4945_tx_3 1 - 147809 149152 . 1 1344 0 -chrX 147809 149677 HC_gene_4945_tx_5 1 - 147809 149677 . 1 1869 0 -chrX 147809 150108 HC_gene_4945_tx_6 1 - 147809 150108 . 1 2300 0 -chrX 147809 150256 HC_gene_4945_tx_7 1 - 147809 150256 . 1 2448 0 -chrX 147809 150395 HC_gene_4945_tx_8 1 - 147809 150395 . 1 2587 0 -chrX 147809 150479 HC_gene_4945_tx_9 2 - 147809 150479 . 1 2671 0 -chrX 147866 148601 HC_gene_4945_tx_2 3 - 147866 148601 . 1 736 0 -chrX 147866 149152 HC_gene_4945_tx_4 2 - 147866 149152 . 1 1287 0 -chrX 147866 149677 HC_gene_4945_tx_10 3 - 147866 149677 . 1 1812 0 -chrX 147866 149986 HC_gene_4945_tx_11 2 - 147866 149986 . 1 2121 0 -chrX 147866 150256 HC_gene_4945_tx_12 1 - 147866 150256 . 1 2391 0 -chrX 147866 150395 HC_gene_4945_tx_13 1 - 147866 150395 . 1 2530 0 -chrX 147866 150479 HC_gene_4945_tx_14 1 - 147866 150479 . 2 1154,1365 0,1249 -chrX 147866 150479 HC_gene_4945_tx_15 10 - 147866 150479 . 1 2614 0 -chrX 147866 150479 HC_gene_4945_tx_16 1 - 147866 150479 . 2 811,1719 0,895 -chrX 147866 150624 HC_gene_4945_tx_17 1 - 147866 150624 . 1 2759 0 -chrX 150866 151678 HC_gene_4649_tx_1 319 + 150866 151678 . 1 813 0 -chrX 150874 151969 HC_gene_4946_tx_1 6 - 150874 151969 . 1 1096 0 -chrX 150874 151969 HC_gene_4946_tx_2 1 - 150874 151969 . 2 522,286 0,810 -chrX 150874 152193 HC_gene_4946_tx_3 4 - 150874 152193 . 1 1320 0 -chrX 150874 153083 HC_gene_4946_tx_4 1 - 150874 153083 . 2 1456,334 0,1876 -chrX 150874 153083 HC_gene_4946_tx_5 9 - 150874 153083 . 1 2210 0 -chrX 151085 151678 HC_gene_4649_tx_2 43 + 151085 151678 . 1 594 0 -chrX 151221 151678 HC_gene_4649_tx_3 20 + 151221 151678 . 1 458 0 -chrX 151562 153083 HC_gene_4946_tx_6 1 - 151562 153083 . 1 1522 0 -chrX 151580 153083 HC_gene_4946_tx_7 1 - 151580 153083 . 1 1504 0 -chrX 151584 153083 HC_gene_4946_tx_8 1 - 151584 153083 . 1 1500 0 -chrX 151586 153083 HC_gene_4946_tx_9 1 - 151586 153083 . 1 1498 0 -chrX 151587 152193 HC_gene_4946_tx_11 1 - 151587 152193 . 1 607 0 -chrX 151595 152193 HC_gene_4946_tx_12 1 - 151595 152193 . 1 599 0 -chrX 151596 151969 HC_gene_4946_tx_15 1 - 151596 151969 . 1 374 0 -chrX 151596 152193 HC_gene_4946_tx_13 2 - 151596 152193 . 1 598 0 -chrX 151599 151969 HC_gene_4946_tx_16 1 - 151599 151969 . 1 371 0 -chrX 151600 152193 HC_gene_4946_tx_14 1 - 151600 152193 . 1 594 0 -chrX 151600 153083 HC_gene_4946_tx_10 1 - 151600 153083 . 1 1484 0 -chrX 152402 153447 MC_gene_4650_tx_1 1 + 152402 153447 . 1 1046 0 -chrX 153254 153874 HC_gene_4947_tx_1 208 - 153254 153874 . 1 621 0 -chrX 153254 154472 HC_gene_4947_tx_2 60 - 153254 154472 . 1 1219 0 -chrX 153254 154472 HC_gene_4947_tx_3 1 - 153254 154472 . 2 629,527 0,692 -chrX 153254 154472 HC_gene_4947_tx_4 1 - 153254 154472 . 2 573,347 0,872 -chrX 153254 154472 HC_gene_4947_tx_5 1 - 153254 154472 . 2 551,578 0,641 -chrX 153254 154472 HC_gene_4947_tx_6 1 - 153254 154472 . 2 357,65 0,1154 -chrX 153254 154472 HC_gene_4947_tx_7 1 - 153254 154472 . 2 268,478 0,741 -chrX 153254 154724 HC_gene_4947_tx_8 1 - 153254 154724 . 2 922,268 0,1203 -chrX 153254 154760 HC_gene_4947_tx_9 788 - 153254 154760 . 1 1507 0 -chrX 153254 154760 HC_gene_4947_tx_10 1 - 153254 154760 . 2 826,340 0,1167 -chrX 153254 154760 HC_gene_4947_tx_11 1 - 153254 154760 . 2 468,757 0,750 -chrX 153254 154760 HC_gene_4947_tx_12 1 - 153254 154760 . 2 268,384 0,1123 -chrX 153254 154760 HC_gene_4947_tx_13 1 - 153254 154760 . 2 921,328 0,1179 -chrX 153254 154760 HC_gene_4947_tx_14 1 - 153254 154760 . 2 890,328 0,1179 -chrX 153254 154760 HC_gene_4947_tx_15 1 - 153254 154760 . 2 788,487 0,1020 -chrX 153254 154760 HC_gene_4947_tx_16 1 - 153254 154760 . 2 670,757 0,750 -chrX 153254 154760 HC_gene_4947_tx_17 1 - 153254 154760 . 2 702,158 0,1349 -chrX 153254 154760 HC_gene_4947_tx_18 1 - 153254 154760 . 2 835,328 0,1179 -chrX 153254 154760 HC_gene_4947_tx_19 1 - 153254 154760 . 2 796,364 0,1143 -chrX 153254 154760 HC_gene_4947_tx_20 1 - 153254 154760 . 2 945,232 0,1275 -chrX 153254 154760 HC_gene_4947_tx_21 1 - 153254 154760 . 2 1258,205 0,1302 -chrX 153254 154760 HC_gene_4947_tx_22 1 - 153254 154760 . 2 749,692 0,815 -chrX 153254 154760 HC_gene_4947_tx_23 1 - 153254 154760 . 2 581,856 0,651 -chrX 153254 154760 HC_gene_4947_tx_24 1 - 153254 154760 . 2 629,815 0,692 -chrX 153254 154760 HC_gene_4947_tx_25 1 - 153254 154760 . 2 1090,131 0,1376 -chrX 153254 154760 HC_gene_4947_tx_26 1 - 153254 154760 . 2 398,766 0,741 -chrX 153254 154760 HC_gene_4947_tx_27 1 - 153254 154760 . 2 1214,232 0,1275 -chrX 153254 154760 HC_gene_4947_tx_28 1 - 153254 154760 . 2 632,779 0,728 -chrX 153254 154760 HC_gene_4947_tx_29 1 - 153254 154760 . 2 112,1327 0,180 -chrX 153254 154760 HC_gene_4947_tx_30 1 - 153254 154760 . 2 830,583 0,924 -chrX 153254 154760 HC_gene_4947_tx_31 1 - 153254 154760 . 2 945,364 0,1143 -chrX 153254 154760 HC_gene_4947_tx_32 1 - 153254 154760 . 2 656,798 0,709 -chrX 153254 154760 HC_gene_4947_tx_33 1 - 153254 154760 . 2 645,815 0,692 -chrX 153254 154760 HC_gene_4947_tx_34 1 - 153254 154760 . 2 1139,280 0,1227 -chrX 153414 154760 HC_gene_4947_tx_35 1 - 153414 154760 . 1 1347 0 -chrX 153416 154472 HC_gene_4947_tx_36 1 - 153416 154472 . 1 1057 0 -chrX 153419 154760 HC_gene_4947_tx_37 3 - 153419 154760 . 1 1342 0 -chrX 153420 154760 HC_gene_4947_tx_38 2 - 153420 154760 . 1 1341 0 -chrX 153423 154760 HC_gene_4947_tx_39 1 - 153423 154760 . 1 1338 0 -chrX 153424 154760 HC_gene_4947_tx_40 1 - 153424 154760 . 1 1337 0 -chrX 153427 154760 HC_gene_4947_tx_41 1 - 153427 154760 . 1 1334 0 -chrX 153428 154760 HC_gene_4947_tx_42 6 - 153428 154760 . 1 1333 0 -chrX 153429 153874 HC_gene_4947_tx_53 1 - 153429 153874 . 1 446 0 -chrX 153429 154472 HC_gene_4947_tx_43 1 - 153429 154472 . 1 1044 0 -chrX 153430 154760 HC_gene_4947_tx_44 8 - 153430 154760 . 1 1331 0 -chrX 153435 154760 HC_gene_4947_tx_45 1 - 153435 154760 . 1 1326 0 -chrX 153436 154760 HC_gene_4947_tx_46 3 - 153436 154760 . 1 1325 0 -chrX 153437 153874 HC_gene_4947_tx_54 1 - 153437 153874 . 1 438 0 -chrX 153438 154760 HC_gene_4947_tx_47 1 - 153438 154760 . 1 1323 0 -chrX 153439 154760 HC_gene_4947_tx_48 1 - 153439 154760 . 1 1322 0 -chrX 153441 154760 HC_gene_4947_tx_49 1 - 153441 154760 . 1 1320 0 -chrX 153442 154760 HC_gene_4947_tx_50 3 - 153442 154760 . 1 1319 0 -chrX 153445 154760 HC_gene_4947_tx_51 1 - 153445 154760 . 1 1316 0 -chrX 153447 154760 HC_gene_4947_tx_52 1 - 153447 154760 . 1 1314 0 -chrX 154830 156146 HC_gene_4948_tx_1 1 - 154830 156146 . 1 1317 0 -chrX 154855 156146 HC_gene_4948_tx_2 1 - 154855 156146 . 1 1292 0 -chrX 154856 156146 HC_gene_4948_tx_3 1 - 154856 156146 . 1 1291 0 -chrX 154857 156146 HC_gene_4948_tx_4 2 - 154857 156146 . 1 1290 0 -chrX 154858 156146 HC_gene_4948_tx_5 1 - 154858 156146 . 1 1289 0 -chrX 154864 156146 HC_gene_4948_tx_6 1 - 154864 156146 . 2 1142,63 0,1220 -chrX 154870 156146 HC_gene_4948_tx_7 1 - 154870 156146 . 1 1277 0 -chrX 154872 156146 HC_gene_4948_tx_8 1 - 154872 156146 . 1 1275 0 -chrX 155013 156489 MC_gene_4651_tx_1 1 + 155013 156489 . 1 1477 0 -chrX 156289 156626 HC_gene_4949_tx_1 11 - 156289 156626 . 1 338 0 -chrX 156289 157307 HC_gene_4949_tx_2 8 - 156289 157307 . 2 501,58 0,961 -chrX 156383 156626 HC_gene_4949_tx_6 1783 - 156383 156626 . 1 244 0 -chrX 156383 157112 HC_gene_4949_tx_7 8 - 156383 157112 . 1 730 0 -chrX 156383 157307 HC_gene_4949_tx_3 793 - 156383 157307 . 2 407,58 0,867 -chrX 156383 157307 HC_gene_4949_tx_4 38 - 156383 157307 . 1 925 0 -chrX 156383 157307 HC_gene_4949_tx_5 18 - 156383 157307 . 2 407,62 0,863 -chrX 158156 159512 HC_gene_4652_tx_1 27 + 158156 159512 . 1 1357 0 -chrX 158156 159512 HC_gene_4652_tx_2 1 + 158156 159512 . 2 289,707 0,650 -chrX 158156 159512 HC_gene_4652_tx_3 1 + 158156 159512 . 2 477,679 0,678 -chrX 158156 159512 HC_gene_4652_tx_4 1 + 158156 159512 . 2 483,607 0,750 -chrX 158156 159512 HC_gene_4652_tx_5 1 + 158156 159512 . 2 52,714 0,643 -chrX 159116 159512 HC_gene_4652_tx_6 10 + 159116 159512 . 1 397 0 -chrX 159452 159877 HC_gene_4950_tx_1 214 - 159452 159877 . 1 426 0 -chrX 160511 161655 HC_gene_4951_tx_1 1 - 160511 161655 . 1 1145 0 -chrX 160541 161703 HC_gene_4653_tx_1 70 + 160541 161703 . 1 1163 0 -chrX 160921 161703 HC_gene_4653_tx_2 1 + 160921 161703 . 2 377,330 0,453 -chrX 160921 161703 HC_gene_4653_tx_3 8 + 160921 161703 . 1 783 0 -chrX 161895 163865 HC_gene_4654_tx_1 1 + 161895 163865 . 1 1971 0 -chrX 161895 164319 HC_gene_4654_tx_2 2 + 161895 164319 . 1 2425 0 -chrX 161911 162343 MC_gene_4952_tx_1 1 - 161911 162343 . 1 433 0 -chrX 161981 164319 HC_gene_4654_tx_3 1 + 161981 164319 . 1 2339 0 -chrX 163044 164319 HC_gene_4654_tx_4 1 + 163044 164319 . 1 1276 0 -chrX 164141 164927 HC_gene_4953_tx_1 3 - 164141 164927 . 1 787 0 -chrX 164141 165380 HC_gene_4953_tx_2 22 - 164141 165380 . 1 1240 0 -chrX 164141 165380 HC_gene_4953_tx_3 1 - 164141 165380 . 2 1034,138 0,1102 -chrX 165620 166271 HC_gene_4954_tx_1 32 - 165620 166271 . 1 652 0 -chrX 165620 166442 HC_gene_4954_tx_2 33 - 165620 166442 . 1 823 0 -chrX 165620 166442 HC_gene_4954_tx_3 1 - 165620 166442 . 2 150,577 0,246 -chrX 165620 166942 HC_gene_4954_tx_4 18 - 165620 166942 . 1 1323 0 -chrX 165620 167997 HC_gene_4954_tx_5 8 - 165620 167997 . 1 2378 0 -chrX 165620 167997 HC_gene_4954_tx_6 1 - 165620 167997 . 2 1515,782 0,1596 -chrX 165620 168364 HC_gene_4954_tx_7 6 - 165620 168364 . 1 2745 0 -chrX 165620 168983 HC_gene_4954_tx_8 1 - 165620 168983 . 2 2762,313 0,3051 -chrX 165620 168983 HC_gene_4954_tx_9 4 - 165620 168983 . 1 3364 0 -chrX 165620 169177 HC_gene_4954_tx_10 3 - 165620 169177 . 1 3558 0 -chrX 165620 169658 HC_gene_4954_tx_11 1 - 165620 169658 . 2 2025,1896 0,2143 -chrX 165620 170554 HC_gene_4954_tx_12 2 - 165620 170554 . 1 4935 0 -chrX 165620 170554 HC_gene_4954_tx_13 1 - 165620 170554 . 2 3141,1704 0,3231 -chrX 165620 170899 HC_gene_4954_tx_14 1 - 165620 170899 . 1 5280 0 -chrX 165620 171026 HC_gene_4954_tx_15 1 - 165620 171026 . 1 5407 0 -chrX 165620 171625 HC_gene_4954_tx_16 2 - 165620 171625 . 1 6006 0 -chrX 165620 171698 HC_gene_4954_tx_17 1 - 165620 171698 . 1 6079 0 -chrX 165620 172516 HC_gene_4954_tx_18 4 - 165620 172516 . 1 6897 0 -chrX 172671 173041 MC_gene_4955_tx_1 1 - 172671 173041 . 1 371 0 -chrX 172822 173543 MC_gene_4655_tx_1 1 + 172822 173543 . 1 722 0 -chrX 173514 173929 HC_gene_4956_tx_1 9 - 173514 173929 . 1 416 0 -chrX 173514 174280 HC_gene_4956_tx_2 7 - 173514 174280 . 1 767 0 -chrX 173514 177594 HC_gene_4956_tx_3 2 - 173514 177594 . 1 4081 0 -chrX 173514 177594 HC_gene_4956_tx_4 1 - 173514 177594 . 2 2589,1419 0,2662 -chrX 177713 178018 MC_gene_4656_tx_1 1 + 177713 178018 . 1 306 0 -chrX 177787 180329 HC_gene_4957_tx_1 2 - 177787 180329 . 1 2543 0 -chrX 177828 178162 MC_gene_4657_tx_1 1 + 177828 178162 . 1 335 0 -chrX 177863 178746 MC_gene_4658_tx_1 1 + 177863 178746 . 1 884 0 -chrX 177896 180329 HC_gene_4957_tx_2 14 - 177896 180329 . 1 2434 0 -chrX 177896 180329 HC_gene_4957_tx_3 1 - 177896 180329 . 2 1457,568 0,1866 -chrX 177896 180329 HC_gene_4957_tx_4 1 - 177896 180329 . 2 742,1321 0,1113 -chrX 177896 180740 HC_gene_4957_tx_5 1 - 177896 180740 . 1 2845 0 -chrX 178053 180329 HC_gene_4957_tx_6 1 - 178053 180329 . 1 2277 0 -chrX 178727 180182 MC_gene_4659_tx_1 1 + 178727 180182 . 1 1456 0 -chrX 180511 180831 HC_gene_4660_tx_1 10 + 180511 180831 . 1 321 0 -chrX 180691 181219 HC_gene_4958_tx_1 1 - 180691 181219 . 1 529 0 -chrX 180694 181219 HC_gene_4958_tx_2 1 - 180694 181219 . 1 526 0 -chrX 180701 181219 HC_gene_4958_tx_3 1 - 180701 181219 . 1 519 0 -chrX 180701 181796 HC_gene_4958_tx_5 2 - 180701 181796 . 1 1096 0 -chrX 180735 181201 HC_gene_4958_tx_4 1 - 180735 181201 . 1 467 0 -chrX 180737 181757 HC_gene_4958_tx_6 1 - 180737 181757 . 1 1021 0 -chrX 180738 181754 HC_gene_4958_tx_7 1 - 180738 181754 . 1 1017 0 -chrX 180738 181796 HC_gene_4958_tx_8 1 - 180738 181796 . 1 1059 0 -chrX 181012 181219 HC_gene_4958_tx_9 1 - 181012 181219 . 1 208 0 -chrX 181012 181796 HC_gene_4958_tx_10 1 - 181012 181796 . 1 785 0 -chrX 181091 181796 HC_gene_4958_tx_11 4 - 181091 181796 . 1 706 0 -chrX 181391 181774 HC_gene_4958_tx_12 1 - 181391 181774 . 1 384 0 -chrX 181391 181778 HC_gene_4958_tx_13 1 - 181391 181778 . 1 388 0 -chrX 181391 181796 HC_gene_4958_tx_14 128 - 181391 181796 . 1 406 0 -chrX 181507 182117 MC_gene_4661_tx_1 1 + 181507 182117 . 1 611 0 -chrX 181799 182475 HC_gene_4959_tx_1 1 - 181799 182475 . 1 677 0 -chrX 182693 183295 MC_gene_4662_tx_1 1 + 182693 183295 . 1 603 0 -chrX 184493 185550 HC_gene_4663_tx_1 15 + 184493 185550 . 1 1058 0 -chrX 184728 185550 HC_gene_4663_tx_2 5 + 184728 185550 . 1 823 0 -chrX 185110 185550 HC_gene_4663_tx_3 4 + 185110 185550 . 1 441 0 -chrX 185431 185817 HC_gene_4960_tx_1 13 - 185431 185817 . 1 387 0 -chrX 185431 186700 HC_gene_4960_tx_2 70 - 185431 186700 . 1 1270 0 -chrX 185431 186700 HC_gene_4960_tx_3 1 - 185431 186700 . 2 419,800 0,470 -chrX 185431 186700 HC_gene_4960_tx_4 1 - 185431 186700 . 2 588,589 0,681 -chrX 185431 186700 HC_gene_4960_tx_5 1 - 185431 186700 . 2 759,132 0,1138 -chrX 186770 187004 MC_gene_4664_tx_1 1 + 186770 187004 . 1 235 0 -chrX 186896 187243 HC_gene_4961_tx_1 42 - 186896 187243 . 1 348 0 -chrX 186896 187630 HC_gene_4961_tx_2 25 - 186896 187630 . 1 735 0 -chrX 186896 187811 HC_gene_4961_tx_3 194 - 186896 187811 . 1 916 0 -chrX 186906 187097 MC_gene_4665_tx_1 1 + 186906 187097 . 1 192 0 -chrX 187028 188086 MC_gene_4666_tx_1 1 + 187028 188086 . 1 1059 0 -chrX 187932 188311 HC_gene_4962_tx_1 36 - 187932 188311 . 1 380 0 -chrX 187932 188402 HC_gene_4962_tx_2 3 - 187932 188402 . 1 471 0 -chrX 187932 188459 HC_gene_4962_tx_3 45 - 187932 188459 . 1 528 0 -chrX 187932 188612 HC_gene_4962_tx_4 15 - 187932 188612 . 1 681 0 -chrX 187932 188612 HC_gene_4962_tx_5 1 - 187932 188612 . 2 235,151 0,530 -chrX 187932 188668 HC_gene_4962_tx_6 20 - 187932 188668 . 1 737 0 -chrX 187932 189020 HC_gene_4962_tx_7 22 - 187932 189020 . 1 1089 0 -chrX 187932 189211 HC_gene_4962_tx_8 1 - 187932 189211 . 2 493,600 0,680 -chrX 187932 189296 HC_gene_4962_tx_9 1 - 187932 189296 . 2 472,849 0,516 -chrX 187932 189440 HC_gene_4962_tx_10 1 - 187932 189440 . 2 633,778 0,731 -chrX 187932 189449 HC_gene_4962_tx_11 143 - 187932 189449 . 1 1518 0 -chrX 187932 189449 HC_gene_4962_tx_12 1 - 187932 189449 . 2 302,768 0,750 -chrX 187932 189449 HC_gene_4962_tx_13 1 - 187932 189449 . 2 520,952 0,566 -chrX 187932 189449 HC_gene_4962_tx_14 1 - 187932 189449 . 2 928,517 0,1001 -chrX 187932 189449 HC_gene_4962_tx_15 1 - 187932 189449 . 2 1417,61 0,1457 -chrX 187932 189449 HC_gene_4962_tx_16 1 - 187932 189449 . 2 861,145 0,1373 -chrX 187932 189449 HC_gene_4962_tx_17 1 - 187932 189449 . 2 650,823 0,695 -chrX 187932 189449 HC_gene_4962_tx_18 2 - 187932 189449 . 2 671,768 0,750 -chrX 187932 189449 HC_gene_4962_tx_19 1 - 187932 189449 . 2 225,1018 0,500 -chrX 187932 189449 HC_gene_4962_tx_20 1 - 187932 189449 . 2 620,810 0,708 -chrX 187932 189449 HC_gene_4962_tx_21 1 - 187932 189449 . 2 331,1018 0,500 -chrX 189698 190373 HC_gene_4667_tx_1 204 + 189698 190373 . 1 676 0 -chrX 189859 190373 HC_gene_4667_tx_2 42 + 189859 190373 . 1 515 0 -chrX 190302 191103 HC_gene_4963_tx_1 156 - 190302 191103 . 1 802 0 -chrX 191143 192225 HC_gene_4964_tx_1 5 - 191143 192225 . 1 1083 0 -chrX 191686 192467 HC_gene_4668_tx_1 30 + 191686 192467 . 1 782 0 -chrX 191686 192467 HC_gene_4668_tx_2 1 + 191686 192467 . 2 233,441 0,341 -chrX 192480 193521 HC_gene_4669_tx_1 14 + 192480 193521 . 1 1042 0 -chrX 192480 193521 HC_gene_4669_tx_2 1 + 192480 193521 . 2 436,563 0,479 -chrX 192480 193521 HC_gene_4669_tx_3 1 + 192480 193521 . 2 387,350 0,692 -chrX 192480 193653 HC_gene_4669_tx_4 64 + 192480 193653 . 1 1174 0 -chrX 192480 193653 HC_gene_4669_tx_5 1 + 192480 193653 . 2 691,371 0,803 -chrX 192894 193653 HC_gene_4669_tx_6 6 + 192894 193653 . 1 760 0 -chrX 193266 193653 HC_gene_4669_tx_7 20 + 193266 193653 . 1 388 0 -chrX 193494 195091 HC_gene_4965_tx_1 23 - 193494 195091 . 1 1598 0 -chrX 193697 195091 HC_gene_4965_tx_2 12 - 193697 195091 . 1 1395 0 -chrX 193697 195304 HC_gene_4965_tx_3 1 - 193697 195304 . 2 774,138 0,1470 -chrX 193697 195304 HC_gene_4965_tx_4 1 - 193697 195304 . 1 1608 0 -chrX 193856 195136 HC_gene_4670_tx_1 12 + 193856 195136 . 1 1281 0 -chrX 193856 195212 HC_gene_4670_tx_2 1 + 193856 195212 . 1 1357 0 -chrX 193856 195305 HC_gene_4670_tx_3 1 + 193856 195305 . 1 1450 0 -chrX 194852 195304 HC_gene_4965_tx_5 1 - 194852 195304 . 1 453 0 -chrX 194996 195304 HC_gene_4965_tx_6 31 - 194996 195304 . 1 309 0 -chrX 194996 196026 HC_gene_4965_tx_7 6 - 194996 196026 . 1 1031 0 -chrX 195974 197230 HC_gene_4671_tx_1 1 + 195974 197230 . 2 77,1085 0,172 -chrX 195974 197230 HC_gene_4671_tx_2 3 + 195974 197230 . 1 1257 0 -chrX 196229 197230 HC_gene_4671_tx_3 88 + 196229 197230 . 1 1002 0 -chrX 196229 197230 HC_gene_4671_tx_4 1 + 196229 197230 . 2 562,373 0,629 -chrX 196229 197230 HC_gene_4671_tx_5 1 + 196229 197230 . 2 181,699 0,303 -chrX 196331 197230 HC_gene_4671_tx_6 10 + 196331 197230 . 1 900 0 -chrX 196595 197230 HC_gene_4671_tx_7 22 + 196595 197230 . 1 636 0 -chrX 196764 197230 HC_gene_4671_tx_8 47 + 196764 197230 . 1 467 0 -chrX 196764 197230 HC_gene_4671_tx_9 1 + 196764 197230 . 2 101,269 0,198 -chrX 196882 197230 HC_gene_4671_tx_10 33 + 196882 197230 . 1 349 0 -chrX 204238 204795 LC_gene_4966_tx_1 1 - 204238 204795 . 1 558 0 -chrX 204298 204552 MC_gene_4672_tx_1 1 + 204298 204552 . 1 255 0 -chrX 204743 204910 MC_gene_4673_tx_1 1 + 204743 204910 . 1 168 0 -chrX 205269 206058 HC_gene_4674_tx_1 4 + 205269 206058 . 1 790 0 -chrX 205269 207603 HC_gene_4674_tx_2 13 + 205269 207603 . 1 2335 0 -chrX 207825 209646 HC_gene_4675_tx_1 5 + 207825 209646 . 1 1822 0 -chrX 207825 209648 HC_gene_4675_tx_2 7 + 207825 209648 . 1 1824 0 -chrX 207825 209649 HC_gene_4675_tx_3 2 + 207825 209649 . 1 1825 0 -chrX 207825 209650 HC_gene_4675_tx_4 1 + 207825 209650 . 1 1826 0 -chrX 207825 209651 HC_gene_4675_tx_5 1 + 207825 209651 . 1 1827 0 -chrX 207825 209652 HC_gene_4675_tx_6 2 + 207825 209652 . 1 1828 0 -chrX 207825 209653 HC_gene_4675_tx_7 20 + 207825 209653 . 1 1829 0 -chrX 207825 209654 HC_gene_4675_tx_8 9 + 207825 209654 . 1 1830 0 -chrX 207825 209655 HC_gene_4675_tx_9 1 + 207825 209655 . 2 1537,213 0,1618 -chrX 207825 209655 HC_gene_4675_tx_10 1 + 207825 209655 . 1 1831 0 -chrX 207825 209656 HC_gene_4675_tx_11 2 + 207825 209656 . 1 1832 0 -chrX 207825 209657 HC_gene_4675_tx_12 3 + 207825 209657 . 1 1833 0 -chrX 207825 209658 HC_gene_4675_tx_13 2 + 207825 209658 . 1 1834 0 -chrX 207825 209666 HC_gene_4675_tx_14 1 + 207825 209666 . 1 1842 0 -chrX 207825 209667 HC_gene_4675_tx_15 1 + 207825 209667 . 1 1843 0 -chrX 207825 209674 HC_gene_4675_tx_16 1 + 207825 209674 . 1 1850 0 -chrX 207825 209678 HC_gene_4675_tx_17 1 + 207825 209678 . 1 1854 0 -chrX 207825 209687 HC_gene_4675_tx_18 9 + 207825 209687 . 1 1863 0 -chrX 207825 209688 HC_gene_4675_tx_19 2 + 207825 209688 . 1 1864 0 -chrX 207825 209689 HC_gene_4675_tx_20 1 + 207825 209689 . 2 1094,705 0,1160 -chrX 207825 209689 HC_gene_4675_tx_21 3 + 207825 209689 . 1 1865 0 -chrX 207825 209692 HC_gene_4675_tx_22 1 + 207825 209692 . 1 1868 0 -chrX 207825 209694 HC_gene_4675_tx_23 1 + 207825 209694 . 1 1870 0 -chrX 207825 209698 HC_gene_4675_tx_24 1 + 207825 209698 . 3 403,1208,43 0,516,1831 -chrX 207825 209698 HC_gene_4675_tx_25 1 + 207825 209698 . 1 1874 0 -chrX 207825 209699 HC_gene_4675_tx_26 8 + 207825 209699 . 1 1875 0 -chrX 207825 209702 HC_gene_4675_tx_27 1 + 207825 209702 . 1 1878 0 -chrX 207825 209703 HC_gene_4675_tx_28 5 + 207825 209703 . 1 1879 0 -chrX 207825 209704 HC_gene_4675_tx_29 1 + 207825 209704 . 1 1880 0 -chrX 207825 209710 HC_gene_4675_tx_30 2 + 207825 209710 . 1 1886 0 -chrX 207825 209716 HC_gene_4675_tx_31 1 + 207825 209716 . 1 1892 0 -chrX 207825 209717 HC_gene_4675_tx_32 4 + 207825 209717 . 1 1893 0 -chrX 207825 209718 HC_gene_4675_tx_33 4 + 207825 209718 . 1 1894 0 -chrX 207825 209721 HC_gene_4675_tx_34 4 + 207825 209721 . 1 1897 0 -chrX 207825 209722 HC_gene_4675_tx_35 2 + 207825 209722 . 1 1898 0 -chrX 207825 209724 HC_gene_4675_tx_36 2 + 207825 209724 . 1 1900 0 -chrX 207825 209727 HC_gene_4675_tx_37 3 + 207825 209727 . 1 1903 0 -chrX 207825 209729 HC_gene_4675_tx_38 1 + 207825 209729 . 1 1905 0 -chrX 207825 209733 HC_gene_4675_tx_39 1 + 207825 209733 . 1 1909 0 -chrX 207825 209736 HC_gene_4675_tx_40 2 + 207825 209736 . 1 1912 0 -chrX 207922 209654 HC_gene_4675_tx_41 1 + 207922 209654 . 1 1733 0 -chrX 207922 209696 HC_gene_4675_tx_42 1 + 207922 209696 . 1 1775 0 -chrX 207922 209709 HC_gene_4675_tx_43 1 + 207922 209709 . 1 1788 0 -chrX 207922 209717 HC_gene_4675_tx_44 1 + 207922 209717 . 1 1796 0 -chrX 208160 209653 HC_gene_4675_tx_45 3 + 208160 209653 . 1 1494 0 -chrX 208160 209657 HC_gene_4675_tx_46 1 + 208160 209657 . 1 1498 0 -chrX 208160 209681 HC_gene_4675_tx_47 1 + 208160 209681 . 1 1522 0 -chrX 208160 209703 HC_gene_4675_tx_48 1 + 208160 209703 . 1 1544 0 -chrX 208160 209704 HC_gene_4675_tx_49 1 + 208160 209704 . 1 1545 0 -chrX 208160 209710 HC_gene_4675_tx_50 1 + 208160 209710 . 1 1551 0 -chrX 208160 209716 HC_gene_4675_tx_51 1 + 208160 209716 . 1 1557 0 -chrX 208160 209721 HC_gene_4675_tx_52 1 + 208160 209721 . 1 1562 0 -chrX 208271 209647 HC_gene_4675_tx_53 1 + 208271 209647 . 1 1377 0 -chrX 208271 209648 HC_gene_4675_tx_54 1 + 208271 209648 . 2 315,415 0,963 -chrX 208271 209650 HC_gene_4675_tx_55 1 + 208271 209650 . 1 1380 0 -chrX 208271 209653 HC_gene_4675_tx_56 1 + 208271 209653 . 1 1383 0 -chrX 208271 209655 HC_gene_4675_tx_57 1 + 208271 209655 . 1 1385 0 -chrX 208271 209685 HC_gene_4675_tx_58 1 + 208271 209685 . 1 1415 0 -chrX 208271 209689 HC_gene_4675_tx_59 2 + 208271 209689 . 1 1419 0 -chrX 208271 209694 HC_gene_4675_tx_60 1 + 208271 209694 . 1 1424 0 -chrX 208271 209696 HC_gene_4675_tx_61 1 + 208271 209696 . 1 1426 0 -chrX 208271 209697 HC_gene_4675_tx_62 1 + 208271 209697 . 1 1427 0 -chrX 208271 209703 HC_gene_4675_tx_63 1 + 208271 209703 . 1 1433 0 -chrX 208271 209709 HC_gene_4675_tx_64 1 + 208271 209709 . 1 1439 0 -chrX 208271 209722 HC_gene_4675_tx_65 1 + 208271 209722 . 1 1452 0 -chrX 208526 209649 HC_gene_4675_tx_66 1 + 208526 209649 . 1 1124 0 -chrX 208526 209653 HC_gene_4675_tx_67 5 + 208526 209653 . 1 1128 0 -chrX 208526 209654 HC_gene_4675_tx_68 2 + 208526 209654 . 1 1129 0 -chrX 208526 209657 HC_gene_4675_tx_69 1 + 208526 209657 . 1 1132 0 -chrX 208526 209677 HC_gene_4675_tx_70 1 + 208526 209677 . 1 1152 0 -chrX 208526 209682 HC_gene_4675_tx_71 1 + 208526 209682 . 1 1157 0 -chrX 208526 209686 HC_gene_4675_tx_72 1 + 208526 209686 . 1 1161 0 -chrX 208526 209690 HC_gene_4675_tx_73 1 + 208526 209690 . 1 1165 0 -chrX 208526 209696 HC_gene_4675_tx_74 1 + 208526 209696 . 1 1171 0 -chrX 208526 209698 HC_gene_4675_tx_75 1 + 208526 209698 . 1 1173 0 -chrX 208526 209699 HC_gene_4675_tx_76 4 + 208526 209699 . 1 1174 0 -chrX 208526 209703 HC_gene_4675_tx_77 1 + 208526 209703 . 1 1178 0 -chrX 208526 209704 HC_gene_4675_tx_78 1 + 208526 209704 . 1 1179 0 -chrX 208526 209711 HC_gene_4675_tx_79 1 + 208526 209711 . 1 1186 0 -chrX 208526 209713 HC_gene_4675_tx_80 1 + 208526 209713 . 1 1188 0 -chrX 208526 209722 HC_gene_4675_tx_81 1 + 208526 209722 . 1 1197 0 -chrX 208526 209723 HC_gene_4675_tx_82 1 + 208526 209723 . 1 1198 0 -chrX 208526 209733 HC_gene_4675_tx_83 1 + 208526 209733 . 1 1208 0 -chrX 208526 209738 HC_gene_4675_tx_84 1 + 208526 209738 . 1 1213 0 -chrX 208777 209650 HC_gene_4675_tx_85 2 + 208777 209650 . 1 874 0 -chrX 208777 209652 HC_gene_4675_tx_86 2 + 208777 209652 . 1 876 0 -chrX 208777 209653 HC_gene_4675_tx_87 4 + 208777 209653 . 1 877 0 -chrX 208777 209654 HC_gene_4675_tx_88 2 + 208777 209654 . 1 878 0 -chrX 208777 209655 HC_gene_4675_tx_89 1 + 208777 209655 . 1 879 0 -chrX 208777 209657 HC_gene_4675_tx_90 1 + 208777 209657 . 1 881 0 -chrX 208777 209680 HC_gene_4675_tx_91 1 + 208777 209680 . 1 904 0 -chrX 208777 209687 HC_gene_4675_tx_92 2 + 208777 209687 . 1 911 0 -chrX 208777 209688 HC_gene_4675_tx_93 2 + 208777 209688 . 1 912 0 -chrX 208777 209689 HC_gene_4675_tx_94 1 + 208777 209689 . 1 913 0 -chrX 208777 209695 HC_gene_4675_tx_95 2 + 208777 209695 . 1 919 0 -chrX 208777 209697 HC_gene_4675_tx_96 1 + 208777 209697 . 1 921 0 -chrX 208777 209698 HC_gene_4675_tx_97 1 + 208777 209698 . 1 922 0 -chrX 208777 209699 HC_gene_4675_tx_98 1 + 208777 209699 . 1 923 0 -chrX 208777 209703 HC_gene_4675_tx_99 1 + 208777 209703 . 1 927 0 -chrX 208777 209704 HC_gene_4675_tx_100 1 + 208777 209704 . 1 928 0 -chrX 208777 209717 HC_gene_4675_tx_101 1 + 208777 209717 . 1 941 0 -chrX 208777 209721 HC_gene_4675_tx_102 1 + 208777 209721 . 1 945 0 -chrX 208777 209723 HC_gene_4675_tx_103 1 + 208777 209723 . 1 947 0 -chrX 208777 209733 HC_gene_4675_tx_104 1 + 208777 209733 . 1 957 0 -chrX 209725 211662 HC_gene_4967_tx_1 1 - 209725 211662 . 2 796,548 0,1390 -chrX 209817 211662 HC_gene_4967_tx_2 14 - 209817 211662 . 1 1846 0 -chrX 209817 211662 HC_gene_4967_tx_3 1 - 209817 211662 . 2 800,979 0,867 -chrX 211930 213834 LC_gene_4676_tx_1 1 + 211930 213834 . 1 1905 0 -chrX 211931 213271 HC_gene_4968_tx_1 5 - 211931 213271 . 1 1341 0 -chrX 211931 214060 HC_gene_4968_tx_2 8 - 211931 214060 . 1 2130 0 -chrX 211931 215830 HC_gene_4968_tx_3 1 - 211931 215830 . 1 3900 0 -chrX 211931 217338 HC_gene_4968_tx_4 10 - 211931 217338 . 1 5408 0 -chrX 217530 219593 HC_gene_4969_tx_1 1 - 217530 219593 . 1 2064 0 -chrX 217530 220085 HC_gene_4969_tx_2 2 - 217530 220085 . 1 2556 0 -chrX 217615 220182 MC_gene_4677_tx_1 1 + 217615 220182 . 1 2568 0 -chrX 220580 223476 HC_gene_4678_tx_1 1 + 220580 223476 . 1 2897 0 -chrX 221378 222666 LC_gene_4970_tx_1 1 - 221378 222666 . 1 1289 0 -chrX 223344 223487 MC_gene_4971_tx_1 1 - 223344 223487 . 1 144 0 -chrX 224265 227159 LC_gene_4679_tx_1 1 + 224265 227159 . 1 2895 0 -chrX 224793 227075 HC_gene_4972_tx_1 2 - 224793 227075 . 1 2283 0 -chrX 226128 227075 HC_gene_4972_tx_2 1 - 226128 227075 . 1 948 0 -chrX 226221 227075 HC_gene_4972_tx_3 3 - 226221 227075 . 1 855 0 -chrX 226407 227075 HC_gene_4972_tx_4 1 - 226407 227075 . 1 669 0 -chrX 226469 227075 HC_gene_4972_tx_5 1 - 226469 227075 . 1 607 0 -chrX 226671 227075 HC_gene_4972_tx_6 1 - 226671 227075 . 1 405 0 -chrX 226728 227075 HC_gene_4972_tx_7 1 - 226728 227075 . 1 348 0 -chrX 227282 227939 HC_gene_4680_tx_1 184 + 227282 227939 . 1 658 0 -chrX 227396 227939 HC_gene_4680_tx_2 30 + 227396 227939 . 1 544 0 -chrX 227957 228479 HC_gene_4973_tx_1 127 - 227957 228479 . 1 523 0 -chrX 228033 228803 MC_gene_4681_tx_1 1 + 228033 228803 . 1 771 0 -chrX 228051 228479 HC_gene_4973_tx_2 12 - 228051 228479 . 1 429 0 -chrX 228798 230917 LC_gene_4682_tx_1 1 + 228798 230917 . 1 2120 0 -chrX 228829 231077 HC_gene_4974_tx_1 2 - 228829 231077 . 1 2249 0 -chrX 228910 231077 HC_gene_4974_tx_2 1 - 228910 231077 . 1 2168 0 -chrX 231258 233779 HC_gene_4683_tx_1 3 + 231258 233779 . 1 2522 0 -chrX 231258 233875 HC_gene_4683_tx_2 8 + 231258 233875 . 1 2618 0 -chrX 234109 235225 HC_gene_4975_tx_1 5 - 234109 235225 . 1 1117 0 -chrX 234109 235392 HC_gene_4975_tx_2 2 - 234109 235392 . 1 1284 0 -chrX 234109 236286 HC_gene_4975_tx_3 3 - 234109 236286 . 1 2178 0 -chrX 234109 236508 HC_gene_4975_tx_4 25 - 234109 236508 . 1 2400 0 -chrX 234109 236508 HC_gene_4975_tx_5 1 - 234109 236508 . 2 1118,1244 0,1156 -chrX 234109 236508 HC_gene_4975_tx_6 1 - 234109 236508 . 2 1006,1255 0,1145 -chrX 234109 236508 HC_gene_4975_tx_7 1 - 234109 236508 . 2 1129,1199 0,1201 -chrX 235662 236508 HC_gene_4975_tx_8 1 - 235662 236508 . 1 847 0 -chrX 236816 237072 HC_gene_4684_tx_1 18 + 236816 237072 . 1 257 0 -chrX 236919 237072 HC_gene_4684_tx_2 1 + 236919 237072 . 1 154 0 -chrX 237230 238437 HC_gene_4685_tx_1 2 + 237230 238437 . 1 1208 0 -chrX 238373 239138 HC_gene_4976_tx_1 2 - 238373 239138 . 1 766 0 -chrX 239325 240200 HC_gene_4686_tx_1 9 + 239325 240200 . 1 876 0 -chrX 240517 241871 MC_gene_4687_tx_1 1 + 240517 241871 . 1 1355 0 -chrX 241891 242101 HC_gene_4688_tx_1 2 + 241891 242101 . 1 211 0 -chrX 241891 243003 HC_gene_4688_tx_2 4 + 241891 243003 . 1 1113 0 -chrX 241891 245335 HC_gene_4688_tx_3 2 + 241891 245335 . 1 3445 0 -chrX 245214 246147 MC_gene_4977_tx_1 1 - 245214 246147 . 1 934 0 -chrX 245546 246301 HC_gene_4689_tx_1 214 + 245546 246301 . 1 756 0 -chrX 246452 247046 HC_gene_4690_tx_1 75 + 246452 247046 . 1 595 0 -chrX 246701 247046 HC_gene_4690_tx_2 16 + 246701 247046 . 1 346 0 -chrX 246962 249058 MC_gene_4978_tx_1 1 - 246962 249058 . 1 2097 0 -chrX 247161 251768 HC_gene_4691_tx_1 1 + 247161 251768 . 1 4608 0 -chrX 247176 247488 MC_gene_4978_tx_2 1 - 247176 247488 . 1 313 0 -chrX 251679 252477 HC_gene_4979_tx_1 6 - 251679 252477 . 1 799 0 -chrX 251679 252740 HC_gene_4979_tx_3 4 - 251679 252740 . 1 1062 0 -chrX 251758 252477 HC_gene_4979_tx_2 1 - 251758 252477 . 1 720 0 -chrX 253737 254488 HC_gene_4980_tx_1 2 - 253737 254488 . 1 752 0 -chrX 253774 254532 LC_gene_4692_tx_1 1 + 253774 254532 . 1 759 0 -chrX 254584 256799 HC_gene_4981_tx_1 11 - 254584 256799 . 1 2216 0 -chrX 254584 256799 HC_gene_4981_tx_2 1 - 254584 256799 . 2 1019,1087 0,1129 -chrX 254753 256799 HC_gene_4981_tx_3 3 - 254753 256799 . 1 2047 0 -chrX 257208 261046 HC_gene_4693_tx_1 3 + 257208 261046 . 1 3839 0 -chrX 257515 261046 HC_gene_4693_tx_2 1 + 257515 261046 . 1 3532 0 -chrX 259395 261046 HC_gene_4693_tx_3 3 + 259395 261046 . 1 1652 0 -chrX 259837 262561 HC_gene_4982_tx_1 1 - 259837 262561 . 1 2725 0 -chrX 260438 261046 HC_gene_4693_tx_4 8 + 260438 261046 . 1 609 0 -chrX 260528 262561 HC_gene_4982_tx_2 1 - 260528 262561 . 1 2034 0 -chrX 260696 262561 HC_gene_4982_tx_3 2 - 260696 262561 . 1 1866 0 -chrX 260915 262561 HC_gene_4982_tx_4 22 - 260915 262561 . 1 1647 0 -chrX 261644 262379 MC_gene_4694_tx_1 1 + 261644 262379 . 1 736 0 -chrX 262688 265114 HC_gene_4983_tx_1 4 - 262688 265114 . 1 2427 0 -chrX 262688 265114 HC_gene_4983_tx_2 1 - 262688 265114 . 2 1157,1219 0,1208 -chrX 264663 265114 HC_gene_4983_tx_3 1 - 264663 265114 . 1 452 0 -chrX 266884 268087 MC_gene_4984_tx_1 1 - 266884 268087 . 1 1204 0 -chrX 267270 268119 MC_gene_4985_tx_1 1 - 267270 268119 . 1 850 0 -chrX 267929 268406 MC_gene_4986_tx_1 1 - 267929 268406 . 1 478 0 -chrX 268025 268393 MC_gene_4695_tx_1 1 + 268025 268393 . 1 369 0 -chrX 268772 269897 HC_gene_4696_tx_1 163 + 268772 269897 . 1 1126 0 -chrX 268929 269897 HC_gene_4696_tx_2 40 + 268929 269897 . 1 969 0 -chrX 269785 271021 HC_gene_4987_tx_1 5 - 269785 271021 . 1 1237 0 -chrX 269785 272589 HC_gene_4987_tx_2 6 - 269785 272589 . 1 2805 0 -chrX 270557 272589 HC_gene_4987_tx_3 5 - 270557 272589 . 1 2033 0 -chrX 272746 273862 HC_gene_4697_tx_1 1 + 272746 273862 . 1 1117 0 -chrX 272746 274793 HC_gene_4697_tx_2 6 + 272746 274793 . 1 2048 0 -chrX 273559 274793 HC_gene_4698_tx_1 5 + 273559 274793 . 1 1235 0 -chrX 273559 274967 HC_gene_4698_tx_2 1 + 273559 274967 . 1 1409 0 -chrX 274729 275855 HC_gene_4988_tx_1 4 - 274729 275855 . 1 1127 0 -chrX 274729 278144 HC_gene_4988_tx_2 3 - 274729 278144 . 1 3416 0 -chrX 274729 278144 HC_gene_4988_tx_3 1 - 274729 278144 . 2 974,2391 0,1025 -chrX 274729 280661 HC_gene_4988_tx_4 1 - 274729 280661 . 1 5933 0 -chrX 278776 281033 HC_gene_4699_tx_1 3 + 278776 281033 . 1 2258 0 -chrX 279139 281033 HC_gene_4699_tx_2 1 + 279139 281033 . 1 1895 0 -chrX 281070 283600 HC_gene_4700_tx_1 29 + 281070 283600 . 1 2531 0 -chrX 281070 283665 HC_gene_4700_tx_2 1 + 281070 283665 . 1 2596 0 -chrX 283640 284325 HC_gene_4989_tx_1 10 - 283640 284325 . 1 686 0 -chrX 283640 284755 HC_gene_4989_tx_2 2 - 283640 284755 . 1 1116 0 -chrX 283640 285285 HC_gene_4989_tx_3 35 - 283640 285285 . 1 1646 0 -chrX 283640 285285 HC_gene_4989_tx_4 1 - 283640 285285 . 2 639,931 0,715 -chrX 283640 285285 HC_gene_4989_tx_5 1 - 283640 285285 . 2 554,1001 0,645 -chrX 285448 285946 HC_gene_4990_tx_1 62 - 285448 285946 . 1 499 0 -chrX 285448 286189 HC_gene_4990_tx_2 26 - 285448 286189 . 1 742 0 -chrX 285448 286280 HC_gene_4990_tx_3 26 - 285448 286280 . 1 833 0 -chrX 285448 286370 HC_gene_4990_tx_4 1 - 285448 286370 . 2 616,250 0,673 -chrX 285448 286370 HC_gene_4990_tx_5 21 - 285448 286370 . 1 923 0 -chrX 285448 288373 HC_gene_4990_tx_6 5 - 285448 288373 . 1 2926 0 -chrX 285448 288638 HC_gene_4990_tx_7 4 - 285448 288638 . 1 3191 0 -chrX 285448 288638 HC_gene_4990_tx_8 1 - 285448 288638 . 3 1060,295,910 0,1631,2281 -chrX 285448 289271 HC_gene_4990_tx_9 4 - 285448 289271 . 1 3824 0 -chrX 285448 289409 HC_gene_4990_tx_10 24 - 285448 289409 . 1 3962 0 -chrX 289646 291147 HC_gene_4701_tx_1 2 + 289646 291147 . 1 1502 0 -chrX 289698 289954 HC_gene_4991_tx_1 9 - 289698 289954 . 1 257 0 -chrX 289698 290476 HC_gene_4991_tx_2 21 - 289698 290476 . 1 779 0 -chrX 289698 290725 HC_gene_4991_tx_3 51 - 289698 290725 . 1 1028 0 -chrX 289698 290821 HC_gene_4991_tx_4 22 - 289698 290821 . 1 1124 0 -chrX 289698 290939 HC_gene_4991_tx_5 171 - 289698 290939 . 1 1242 0 -chrX 290979 291174 HC_gene_4992_tx_1 2 - 290979 291174 . 1 196 0 -chrX 290979 291743 HC_gene_4992_tx_2 16 - 290979 291743 . 1 765 0 -chrX 290979 291834 HC_gene_4992_tx_3 11 - 290979 291834 . 1 856 0 -chrX 290979 291887 HC_gene_4992_tx_4 15 - 290979 291887 . 1 909 0 -chrX 290979 292070 HC_gene_4992_tx_5 18 - 290979 292070 . 1 1092 0 -chrX 290979 292070 HC_gene_4992_tx_6 1 - 290979 292070 . 2 434,541 0,551 -chrX 290979 292157 HC_gene_4992_tx_7 16 - 290979 292157 . 1 1179 0 -chrX 290979 292453 HC_gene_4992_tx_8 16 - 290979 292453 . 1 1475 0 -chrX 290979 293321 HC_gene_4992_tx_9 1 - 290979 293321 . 1 2343 0 -chrX 290979 293400 HC_gene_4992_tx_10 2 - 290979 293400 . 1 2422 0 -chrX 290979 293400 HC_gene_4992_tx_11 1 - 290979 293400 . 2 1822,410 0,2012 -chrX 290979 293525 HC_gene_4992_tx_12 1 - 290979 293525 . 2 377,1931 0,616 -chrX 290979 293525 HC_gene_4992_tx_13 3 - 290979 293525 . 1 2547 0 -chrX 290979 294055 HC_gene_4992_tx_14 1 - 290979 294055 . 1 3077 0 -chrX 291496 294319 HC_gene_4702_tx_1 1 + 291496 294319 . 1 2824 0 -chrX 291602 294204 HC_gene_4702_tx_2 1 + 291602 294204 . 1 2603 0 -chrX 291828 295048 HC_gene_4702_tx_4 1 + 291828 295048 . 1 3221 0 -chrX 291995 294204 HC_gene_4702_tx_3 1 + 291995 294204 . 1 2210 0 -chrX 291995 295048 HC_gene_4702_tx_5 1 + 291995 295048 . 1 3054 0 -chrX 293157 294204 HC_gene_4702_tx_6 1 + 293157 294204 . 1 1048 0 -chrX 293157 295048 HC_gene_4702_tx_7 1 + 293157 295048 . 1 1892 0 -chrX 294094 294901 MC_gene_4993_tx_1 1 - 294094 294901 . 1 808 0 -chrX 294647 295048 HC_gene_4702_tx_8 32 + 294647 295048 . 1 402 0 -chrX 295180 298923 HC_gene_4703_tx_1 4 + 295180 298923 . 1 3744 0 -chrX 295180 299014 HC_gene_4703_tx_2 1 + 295180 299014 . 1 3835 0 -chrX 295180 299171 HC_gene_4703_tx_3 2 + 295180 299171 . 1 3992 0 -chrX 295871 298923 HC_gene_4703_tx_4 1 + 295871 298923 . 1 3053 0 -chrX 295871 299171 HC_gene_4703_tx_5 2 + 295871 299171 . 1 3301 0 -chrX 296387 298923 HC_gene_4703_tx_6 1 + 296387 298923 . 1 2537 0 -chrX 297394 298923 HC_gene_4703_tx_7 1 + 297394 298923 . 1 1530 0 -chrX 297449 299014 HC_gene_4703_tx_8 1 + 297449 299014 . 1 1566 0 -chrX 297449 299171 HC_gene_4703_tx_9 1 + 297449 299171 . 1 1723 0 -chrX 297729 298923 HC_gene_4703_tx_10 5 + 297729 298923 . 1 1195 0 -chrX 297729 299014 HC_gene_4703_tx_11 1 + 297729 299014 . 1 1286 0 -chrX 297804 298923 HC_gene_4703_tx_12 1 + 297804 298923 . 1 1120 0 -chrX 297889 298923 HC_gene_4703_tx_13 12 + 297889 298923 . 1 1035 0 -chrX 297889 299014 HC_gene_4703_tx_14 1 + 297889 299014 . 1 1126 0 -chrX 297889 299171 HC_gene_4703_tx_15 4 + 297889 299171 . 1 1283 0 -chrX 298104 298923 HC_gene_4703_tx_16 13 + 298104 298923 . 1 820 0 -chrX 298104 299014 HC_gene_4703_tx_17 3 + 298104 299014 . 1 911 0 -chrX 298104 299171 HC_gene_4703_tx_18 2 + 298104 299171 . 1 1068 0 -chrX 299070 300650 HC_gene_4994_tx_1 4 - 299070 300650 . 1 1581 0 -chrX 299070 302873 HC_gene_4994_tx_2 6 - 299070 302873 . 1 3804 0 -chrX 303096 305225 HC_gene_4704_tx_1 12 + 303096 305225 . 1 2130 0 -chrX 304539 305225 HC_gene_4704_tx_2 6 + 304539 305225 . 1 687 0 -chrX 304630 305675 HC_gene_4995_tx_1 2 - 304630 305675 . 1 1046 0 -chrX 304630 305900 HC_gene_4995_tx_2 17 - 304630 305900 . 1 1271 0 -chrX 304630 305900 HC_gene_4995_tx_3 1 - 304630 305900 . 2 767,329 0,942 -chrX 304770 305225 HC_gene_4704_tx_3 9 + 304770 305225 . 1 456 0 -chrX 304827 305900 HC_gene_4995_tx_4 1 - 304827 305900 . 1 1074 0 -chrX 305047 305900 HC_gene_4995_tx_5 1 - 305047 305900 . 1 854 0 -chrX 305056 305900 HC_gene_4995_tx_6 3 - 305056 305900 . 1 845 0 -chrX 305060 305675 HC_gene_4995_tx_20 2 - 305060 305675 . 1 616 0 -chrX 305060 305900 HC_gene_4995_tx_7 2 - 305060 305900 . 1 841 0 -chrX 305069 305900 HC_gene_4995_tx_8 1 - 305069 305900 . 1 832 0 -chrX 305070 305900 HC_gene_4995_tx_9 2 - 305070 305900 . 1 831 0 -chrX 305074 305900 HC_gene_4995_tx_10 1 - 305074 305900 . 1 827 0 -chrX 305077 305675 HC_gene_4995_tx_21 1 - 305077 305675 . 1 599 0 -chrX 305077 305900 HC_gene_4995_tx_11 4 - 305077 305900 . 1 824 0 -chrX 305082 305900 HC_gene_4995_tx_12 1 - 305082 305900 . 1 819 0 -chrX 305083 305900 HC_gene_4995_tx_13 1 - 305083 305900 . 1 818 0 -chrX 305086 305900 HC_gene_4995_tx_14 1 - 305086 305900 . 1 815 0 -chrX 305089 305900 HC_gene_4995_tx_15 1 - 305089 305900 . 1 812 0 -chrX 305091 305900 HC_gene_4995_tx_16 1 - 305091 305900 . 1 810 0 -chrX 305099 305900 HC_gene_4995_tx_17 2 - 305099 305900 . 1 802 0 -chrX 305103 305900 HC_gene_4995_tx_18 1 - 305103 305900 . 1 798 0 -chrX 305104 305675 HC_gene_4995_tx_22 1 - 305104 305675 . 1 572 0 -chrX 305105 305900 HC_gene_4995_tx_19 1 - 305105 305900 . 1 796 0 -chrX 305468 305859 LC_gene_4705_tx_1 1 + 305468 305859 . 1 392 0 -chrX 306086 307062 HC_gene_4706_tx_1 1 + 306086 307062 . 1 977 0 -chrX 306086 307963 HC_gene_4706_tx_2 9 + 306086 307963 . 1 1878 0 -chrX 306086 308030 HC_gene_4706_tx_3 3 + 306086 308030 . 1 1945 0 -chrX 308749 310645 HC_gene_4996_tx_1 1 - 308749 310645 . 1 1897 0 -chrX 310830 312713 HC_gene_4997_tx_1 25 - 310830 312713 . 1 1884 0 -chrX 310830 312713 HC_gene_4997_tx_2 1 - 310830 312713 . 2 743,1084 0,800 -chrX 310830 312713 HC_gene_4997_tx_3 1 - 310830 312713 . 2 743,1041 0,843 -chrX 310830 312713 HC_gene_4997_tx_4 1 - 310830 312713 . 2 631,1183 0,701 -chrX 310895 312146 MC_gene_4707_tx_1 1 + 310895 312146 . 1 1252 0 -chrX 312656 313020 MC_gene_4708_tx_1 1 + 312656 313020 . 1 365 0 -chrX 312910 313296 HC_gene_4998_tx_1 19 - 312910 313296 . 1 387 0 -chrX 312910 313434 HC_gene_4998_tx_2 19 - 312910 313434 . 1 525 0 -chrX 312910 313546 HC_gene_4998_tx_3 10 - 312910 313546 . 1 637 0 -chrX 312910 313937 HC_gene_4998_tx_4 54 - 312910 313937 . 1 1028 0 -chrX 313917 314285 HC_gene_4999_tx_1 6 - 313917 314285 . 1 369 0 -chrX 313917 314594 HC_gene_4999_tx_2 4 - 313917 314594 . 1 678 0 -chrX 313917 314866 HC_gene_4999_tx_3 1 - 313917 314866 . 1 950 0 -chrX 313917 314888 HC_gene_4999_tx_4 2 - 313917 314888 . 1 972 0 -chrX 313917 314892 HC_gene_4999_tx_5 45 - 313917 314892 . 1 976 0 -chrX 313917 314892 HC_gene_4999_tx_6 1 - 313917 314892 . 2 135,795 0,181 -chrX 313917 314895 HC_gene_4999_tx_7 1 - 313917 314895 . 1 979 0 -chrX 314937 315591 HC_gene_5000_tx_1 87 - 314937 315591 . 1 655 0 -chrX 314937 316008 HC_gene_5000_tx_2 1 - 314937 316008 . 1 1072 0 -chrX 314937 316515 HC_gene_5000_tx_3 2 - 314937 316515 . 1 1579 0 -chrX 315663 316349 HC_gene_5000_tx_4 1 - 315663 316349 . 1 687 0 -chrX 315663 316515 HC_gene_5000_tx_5 2 - 315663 316515 . 1 853 0 -chrX 315664 316008 HC_gene_5000_tx_17 1 - 315664 316008 . 1 345 0 -chrX 315664 316515 HC_gene_5000_tx_6 2 - 315664 316515 . 1 852 0 -chrX 315667 316515 HC_gene_5000_tx_7 1 - 315667 316515 . 1 849 0 -chrX 315669 316349 HC_gene_5000_tx_8 1 - 315669 316349 . 1 681 0 -chrX 315669 316515 HC_gene_5000_tx_9 1 - 315669 316515 . 1 847 0 -chrX 315674 316515 HC_gene_5000_tx_10 1 - 315674 316515 . 1 842 0 -chrX 315675 316515 HC_gene_5000_tx_11 1 - 315675 316515 . 1 841 0 -chrX 315676 316515 HC_gene_5000_tx_12 6 - 315676 316515 . 1 840 0 -chrX 315677 316008 HC_gene_5000_tx_18 3 - 315677 316008 . 1 332 0 -chrX 315677 316349 HC_gene_5000_tx_13 1 - 315677 316349 . 1 673 0 -chrX 315677 316515 HC_gene_5000_tx_14 5 - 315677 316515 . 1 839 0 -chrX 315678 316349 HC_gene_5000_tx_15 4 - 315678 316349 . 1 672 0 -chrX 315678 316515 HC_gene_5000_tx_16 19 - 315678 316515 . 1 838 0 -chrX 316693 317182 HC_gene_4709_tx_1 179 + 316693 317182 . 1 490 0 -chrX 316928 317182 HC_gene_4709_tx_2 9 + 316928 317182 . 1 255 0 -chrX 316946 317310 HC_gene_5001_tx_1 3 - 316946 317310 . 1 365 0 -chrX 317258 319879 HC_gene_4710_tx_1 10 + 317258 319879 . 1 2622 0 -chrX 317258 319879 HC_gene_4710_tx_2 1 + 317258 319879 . 2 485,1554 0,1068 -chrX 317419 319879 HC_gene_4710_tx_3 1 + 317419 319879 . 1 2461 0 -chrX 318985 319778 HC_gene_5002_tx_1 1 - 318985 319778 . 1 794 0 -chrX 319135 319778 HC_gene_5002_tx_2 4 - 319135 319778 . 1 644 0 -chrX 319975 322304 HC_gene_4711_tx_1 7 + 319975 322304 . 1 2330 0 -chrX 319975 322304 HC_gene_4711_tx_2 1 + 319975 322304 . 2 1607,658 0,1672 -chrX 319975 323183 HC_gene_4711_tx_3 3 + 319975 323183 . 1 3209 0 -chrX 319975 323183 HC_gene_4711_tx_4 1 + 319975 323183 . 2 2241,878 0,2331 -chrX 321436 322304 HC_gene_4711_tx_5 4 + 321436 322304 . 1 869 0 -chrX 321436 323183 HC_gene_4711_tx_6 2 + 321436 323183 . 1 1748 0 -chrX 321436 323183 HC_gene_4711_tx_7 1 + 321436 323183 . 2 1063,627 0,1121 -chrX 321652 322304 HC_gene_4711_tx_8 2 + 321652 322304 . 1 653 0 -chrX 322096 322987 MC_gene_5003_tx_1 1 - 322096 322987 . 1 892 0 -chrX 322170 323137 MC_gene_5004_tx_1 1 - 322170 323137 . 1 968 0 -chrX 323216 323524 MC_gene_5005_tx_1 1 - 323216 323524 . 1 309 0 -chrX 323392 324824 HC_gene_4712_tx_1 46 + 323392 324824 . 1 1433 0 -chrX 323392 324824 HC_gene_4712_tx_2 1 + 323392 324824 . 2 1276,110 0,1323 -chrX 323866 324824 HC_gene_4712_tx_3 3 + 323866 324824 . 1 959 0 -chrX 323927 324824 HC_gene_4712_tx_4 9 + 323927 324824 . 1 898 0 -chrX 324761 325194 HC_gene_5006_tx_1 1 - 324761 325194 . 1 434 0 -chrX 324928 325817 HC_gene_4713_tx_1 4 + 324928 325817 . 1 890 0 -chrX 324928 326210 HC_gene_4713_tx_2 4 + 324928 326210 . 1 1283 0 -chrX 324928 326282 HC_gene_4713_tx_3 16 + 324928 326282 . 1 1355 0 -chrX 325346 326282 HC_gene_4713_tx_4 1 + 325346 326282 . 1 937 0 -chrX 326178 327919 HC_gene_5007_tx_1 3 - 326178 327919 . 1 1742 0 -chrX 328034 328552 HC_gene_5008_tx_1 3 - 328034 328552 . 1 519 0 -chrX 328034 328949 HC_gene_5008_tx_2 1 - 328034 328949 . 1 916 0 -chrX 328034 329141 HC_gene_5008_tx_3 1 - 328034 329141 . 1 1108 0 -chrX 328034 330145 HC_gene_5008_tx_4 1 - 328034 330145 . 3 596,358,1005 0,684,1107 -chrX 328034 330180 HC_gene_5008_tx_5 8 - 328034 330180 . 1 2147 0 -chrX 329781 330228 HC_gene_4714_tx_1 2 + 329781 330228 . 1 448 0 -chrX 330257 333149 HC_gene_5009_tx_1 1 - 330257 333149 . 1 2893 0 -chrX 330314 333082 HC_gene_5009_tx_2 1 - 330314 333082 . 2 1736,960 0,1809 -chrX 330314 333082 HC_gene_5009_tx_3 1 - 330314 333082 . 1 2769 0 -chrX 330314 333149 HC_gene_5009_tx_4 3 - 330314 333149 . 1 2836 0 -chrX 333266 334075 MC_gene_5010_tx_1 1 - 333266 334075 . 1 810 0 -chrX 333328 334167 HC_gene_4715_tx_1 261 + 333328 334167 . 1 840 0 -chrX 333528 334167 HC_gene_4715_tx_2 25 + 333528 334167 . 1 640 0 -chrX 333638 334167 HC_gene_4715_tx_3 41 + 333638 334167 . 1 530 0 -chrX 333696 334167 HC_gene_4715_tx_4 10 + 333696 334167 . 1 472 0 -chrX 333783 334167 HC_gene_4715_tx_5 35 + 333783 334167 . 1 385 0 -chrX 334259 335727 HC_gene_4716_tx_1 1 + 334259 335727 . 1 1469 0 -chrX 334259 335734 HC_gene_4716_tx_2 1 + 334259 335734 . 1 1476 0 -chrX 334259 335745 HC_gene_4716_tx_3 1 + 334259 335745 . 1 1487 0 -chrX 334259 335746 HC_gene_4716_tx_4 1 + 334259 335746 . 1 1488 0 -chrX 334259 335748 HC_gene_4716_tx_5 1 + 334259 335748 . 1 1490 0 -chrX 334259 335750 HC_gene_4716_tx_6 1 + 334259 335750 . 1 1492 0 -chrX 334259 335752 HC_gene_4716_tx_7 3 + 334259 335752 . 1 1494 0 -chrX 334259 335754 HC_gene_4716_tx_8 1 + 334259 335754 . 1 1496 0 -chrX 334259 335755 HC_gene_4716_tx_9 1 + 334259 335755 . 1 1497 0 -chrX 334259 335761 HC_gene_4716_tx_10 1 + 334259 335761 . 1 1503 0 -chrX 334259 335767 HC_gene_4716_tx_11 1 + 334259 335767 . 1 1509 0 -chrX 334259 335776 HC_gene_4716_tx_12 1 + 334259 335776 . 1 1518 0 -chrX 334259 335780 HC_gene_4716_tx_13 2 + 334259 335780 . 1 1522 0 -chrX 334259 335781 HC_gene_4716_tx_14 1 + 334259 335781 . 1 1523 0 -chrX 334259 335783 HC_gene_4716_tx_15 1 + 334259 335783 . 1 1525 0 -chrX 334259 335787 HC_gene_4716_tx_16 1 + 334259 335787 . 1 1529 0 -chrX 334259 335789 HC_gene_4716_tx_17 1 + 334259 335789 . 1 1531 0 -chrX 334259 335796 HC_gene_4716_tx_18 1 + 334259 335796 . 1 1538 0 -chrX 334259 335869 HC_gene_4716_tx_19 5 + 334259 335869 . 1 1611 0 -chrX 334259 335875 HC_gene_4716_tx_20 1 + 334259 335875 . 2 534,796 0,821 -chrX 334270 335883 HC_gene_4716_tx_21 1 + 334270 335883 . 1 1614 0 -chrX 334273 335890 HC_gene_4716_tx_22 1 + 334273 335890 . 1 1618 0 -chrX 334280 335886 HC_gene_4716_tx_23 1 + 334280 335886 . 1 1607 0 -chrX 334281 335882 HC_gene_4716_tx_24 1 + 334281 335882 . 1 1602 0 -chrX 334283 335892 HC_gene_4716_tx_25 1 + 334283 335892 . 1 1610 0 -chrX 334285 335877 HC_gene_4716_tx_26 1 + 334285 335877 . 1 1593 0 -chrX 335100 335725 HC_gene_4716_tx_27 1 + 335100 335725 . 1 626 0 -chrX 335100 335739 HC_gene_4716_tx_28 1 + 335100 335739 . 1 640 0 -chrX 335100 335743 HC_gene_4716_tx_29 1 + 335100 335743 . 1 644 0 -chrX 335100 335777 HC_gene_4716_tx_30 1 + 335100 335777 . 1 678 0 -chrX 335100 335778 HC_gene_4716_tx_31 1 + 335100 335778 . 1 679 0 -chrX 335100 335781 HC_gene_4716_tx_32 1 + 335100 335781 . 1 682 0 -chrX 335100 335786 HC_gene_4716_tx_33 1 + 335100 335786 . 1 687 0 -chrX 335100 335796 HC_gene_4716_tx_34 1 + 335100 335796 . 1 697 0 -chrX 335189 335748 HC_gene_4716_tx_35 1 + 335189 335748 . 1 560 0 -chrX 335189 335768 HC_gene_4716_tx_36 1 + 335189 335768 . 1 580 0 -chrX 335189 335774 HC_gene_4716_tx_37 1 + 335189 335774 . 1 586 0 -chrX 335189 335869 HC_gene_4716_tx_38 4 + 335189 335869 . 1 681 0 -chrX 335320 335568 MC_gene_5011_tx_1 1 - 335320 335568 . 1 249 0 -chrX 335449 335719 HC_gene_4716_tx_39 1 + 335449 335719 . 1 271 0 -chrX 335449 335748 HC_gene_4716_tx_40 1 + 335449 335748 . 1 300 0 -chrX 335449 335755 HC_gene_4716_tx_41 1 + 335449 335755 . 1 307 0 -chrX 335449 335770 HC_gene_4716_tx_42 1 + 335449 335770 . 1 322 0 -chrX 335449 335775 HC_gene_4716_tx_43 1 + 335449 335775 . 1 327 0 -chrX 335449 335776 HC_gene_4716_tx_44 1 + 335449 335776 . 1 328 0 -chrX 335449 335795 HC_gene_4716_tx_45 1 + 335449 335795 . 1 347 0 -chrX 335782 336829 LC_gene_5012_tx_1 1 - 335782 336829 . 1 1048 0 -chrX 335875 337231 HC_gene_4717_tx_1 53 + 335875 337231 . 1 1357 0 -chrX 336725 337231 HC_gene_4717_tx_2 1 + 336725 337231 . 1 507 0 -chrX 337096 337602 LC_gene_5013_tx_1 1 - 337096 337602 . 1 507 0 -chrX 338004 339400 HC_gene_4718_tx_1 2 + 338004 339400 . 1 1397 0 -chrX 338196 339400 HC_gene_4718_tx_2 276 + 338196 339400 . 1 1205 0 -chrX 338353 339400 HC_gene_4718_tx_3 13 + 338353 339400 . 1 1048 0 -chrX 338436 339400 HC_gene_4718_tx_4 50 + 338436 339400 . 1 965 0 -chrX 338952 339400 HC_gene_4718_tx_5 21 + 338952 339400 . 1 449 0 -chrX 339079 339400 HC_gene_4718_tx_6 48 + 339079 339400 . 1 322 0 -chrX 340546 342220 HC_gene_5014_tx_1 1 - 340546 342220 . 1 1675 0 -chrX 340752 342220 HC_gene_5014_tx_2 1 - 340752 342220 . 1 1469 0 -chrX 341000 342220 HC_gene_5014_tx_3 1 - 341000 342220 . 1 1221 0 -chrX 341829 342348 HC_gene_4719_tx_1 2 + 341829 342348 . 1 520 0 -chrX 342460 345804 HC_gene_4720_tx_1 9 + 342460 345804 . 1 3345 0 -chrX 342460 345804 HC_gene_4720_tx_2 1 + 342460 345804 . 2 2280,960 0,2385 -chrX 342852 345804 HC_gene_4720_tx_3 1 + 342852 345804 . 1 2953 0 -chrX 343012 345804 HC_gene_4720_tx_4 2 + 343012 345804 . 1 2793 0 -chrX 343222 345804 HC_gene_4720_tx_5 1 + 343222 345804 . 1 2583 0 -chrX 343654 345804 HC_gene_4720_tx_6 1 + 343654 345804 . 2 1028,938 0,1213 -chrX 343654 345804 HC_gene_4720_tx_7 1 + 343654 345804 . 2 117,1668 0,483 -chrX 343654 345804 HC_gene_4720_tx_8 1 + 343654 345804 . 1 2151 0 -chrX 345193 345804 HC_gene_4720_tx_9 13 + 345193 345804 . 1 612 0 -chrX 345193 345804 HC_gene_4720_tx_10 1 + 345193 345804 . 2 471,53 0,559 -chrX 345964 347419 HC_gene_4721_tx_1 1 + 345964 347419 . 2 166,1153 0,303 -chrX 345964 347419 HC_gene_4721_tx_2 15 + 345964 347419 . 1 1456 0 -chrX 345964 347419 HC_gene_4721_tx_3 1 + 345964 347419 . 2 666,639 0,817 -chrX 347050 347419 HC_gene_4721_tx_4 6 + 347050 347419 . 1 370 0 -chrX 347114 348663 HC_gene_5015_tx_1 1 - 347114 348663 . 1 1550 0 -chrX 347194 348087 HC_gene_5015_tx_2 2 - 347194 348087 . 1 894 0 -chrX 347194 348310 HC_gene_5015_tx_3 1 - 347194 348310 . 1 1117 0 -chrX 347194 348474 HC_gene_5015_tx_4 1 - 347194 348474 . 2 80,683 0,598 -chrX 347322 348087 HC_gene_5015_tx_5 4 - 347322 348087 . 1 766 0 -chrX 347322 348310 HC_gene_5015_tx_6 11 - 347322 348310 . 1 989 0 -chrX 347322 348310 HC_gene_5015_tx_7 1 - 347322 348310 . 2 488,438 0,551 -chrX 347322 348474 HC_gene_5015_tx_8 3 - 347322 348474 . 1 1153 0 -chrX 347322 348648 HC_gene_5015_tx_9 1 - 347322 348648 . 2 717,191 0,1136 -chrX 347322 348663 HC_gene_5015_tx_10 21 - 347322 348663 . 1 1342 0 -chrX 347322 348663 HC_gene_5015_tx_11 1 - 347322 348663 . 2 488,809 0,533 -chrX 348276 348881 LC_gene_4722_tx_1 1 + 348276 348881 . 1 606 0 -chrX 348619 348912 HC_gene_5016_tx_1 14 - 348619 348912 . 1 294 0 -chrX 348619 348925 HC_gene_5016_tx_2 1 - 348619 348925 . 1 307 0 -chrX 349201 349857 MC_gene_4723_tx_1 1 + 349201 349857 . 1 657 0 -chrX 349236 349357 HC_gene_5017_tx_1 2 - 349236 349357 . 1 122 0 -chrX 349495 352213 HC_gene_5018_tx_1 1 - 349495 352213 . 1 2719 0 -chrX 349495 352213 HC_gene_5018_tx_2 1 - 349495 352213 . 2 1196,1403 0,1316 -chrX 352361 353731 HC_gene_4724_tx_1 14 + 352361 353731 . 1 1371 0 -chrX 352361 353906 HC_gene_4724_tx_2 2 + 352361 353906 . 1 1546 0 -chrX 353016 353731 HC_gene_4724_tx_3 6 + 353016 353731 . 1 716 0 -chrX 354463 355182 LC_gene_4725_tx_1 1 + 354463 355182 . 1 720 0 -chrX 355937 357720 LC_gene_5019_tx_1 1 - 355937 357720 . 1 1784 0 -chrX 357526 358134 HC_gene_4726_tx_1 1 + 357526 358134 . 2 29,531 0,78 -chrX 357526 358134 HC_gene_4726_tx_2 16 + 357526 358134 . 1 609 0 -chrX 357907 358345 HC_gene_5020_tx_1 3 - 357907 358345 . 1 439 0 -chrX 357907 358984 HC_gene_5020_tx_2 1 - 357907 358984 . 1 1078 0 -chrX 357907 359714 HC_gene_5020_tx_4 10 - 357907 359714 . 1 1808 0 -chrX 358034 358345 HC_gene_5020_tx_11 18 - 358034 358345 . 1 312 0 -chrX 358034 358984 HC_gene_5020_tx_3 4 - 358034 358984 . 1 951 0 -chrX 358034 359714 HC_gene_5020_tx_5 37 - 358034 359714 . 1 1681 0 -chrX 358034 359714 HC_gene_5020_tx_6 1 - 358034 359714 . 2 697,760 0,921 -chrX 358034 359714 HC_gene_5020_tx_7 1 - 358034 359714 . 2 1226,132 0,1549 -chrX 358034 359714 HC_gene_5020_tx_8 1 - 358034 359714 . 2 666,932 0,749 -chrX 358034 359714 HC_gene_5020_tx_9 1 - 358034 359714 . 2 1079,536 0,1145 -chrX 358034 359714 HC_gene_5020_tx_10 1 - 358034 359714 . 2 742,875 0,806 -chrX 358142 360066 LC_gene_4727_tx_1 1 + 358142 360066 . 1 1925 0 -chrX 361066 361637 HC_gene_5021_tx_1 2 - 361066 361637 . 1 572 0 -chrX 361170 365568 HC_gene_4728_tx_1 3 + 361170 365568 . 1 4399 0 -chrX 361573 365568 HC_gene_4728_tx_2 1 + 361573 365568 . 2 3865,79 0,3917 -chrX 362038 365568 HC_gene_4728_tx_3 2 + 362038 365568 . 1 3531 0 -chrX 362120 365568 HC_gene_4728_tx_4 1 + 362120 365568 . 2 67,2990 0,459 -chrX 362120 365568 HC_gene_4728_tx_5 1 + 362120 365568 . 1 3449 0 -chrX 362767 365568 HC_gene_4728_tx_6 2 + 362767 365568 . 1 2802 0 -chrX 364469 365225 LC_gene_5022_tx_1 1 - 364469 365225 . 1 757 0 -chrX 364729 365568 HC_gene_4728_tx_7 12 + 364729 365568 . 1 840 0 -chrX 365725 368474 HC_gene_4729_tx_1 14 + 365725 368474 . 2 60,2572 0,178 -chrX 365725 368474 HC_gene_4729_tx_2 1 + 365725 368474 . 1 2750 0 -chrX 366331 368474 HC_gene_4729_tx_3 4 + 366331 368474 . 1 2144 0 -chrX 366637 368474 HC_gene_4729_tx_4 7 + 366637 368474 . 1 1838 0 -chrX 367594 368474 HC_gene_4729_tx_5 11 + 367594 368474 . 1 881 0 -chrX 368374 369809 HC_gene_5023_tx_1 5 - 368374 369809 . 1 1436 0 -chrX 368374 371440 HC_gene_5023_tx_3 1 - 368374 371440 . 1 3067 0 -chrX 368551 369809 HC_gene_5023_tx_2 2 - 368551 369809 . 1 1259 0 -chrX 368551 371440 HC_gene_5023_tx_4 1 - 368551 371440 . 1 2890 0 -chrX 372479 373905 HC_gene_5024_tx_1 1 - 372479 373905 . 1 1427 0 -chrX 374096 374333 MC_gene_5025_tx_1 1 - 374096 374333 . 1 238 0 -chrX 374268 374861 LC_gene_4730_tx_1 1 + 374268 374861 . 1 594 0 -chrX 374861 375260 MC_gene_5026_tx_1 1 - 374861 375260 . 1 400 0 -chrX 375049 376303 MC_gene_4731_tx_1 1 + 375049 376303 . 2 875,30 0,1225 -chrX 375390 375998 MC_gene_4731_tx_2 1 + 375390 375998 . 1 609 0 -chrX 375866 376947 MC_gene_5027_tx_1 1 - 375866 376947 . 1 1082 0 -chrX 376549 377443 MC_gene_4732_tx_1 1 + 376549 377443 . 1 895 0 -chrX 377570 378291 LC_gene_4733_tx_1 1 + 377570 378291 . 1 722 0 -chrX 378705 380253 HC_gene_4734_tx_1 37 + 378705 380253 . 1 1549 0 -chrX 379224 380253 HC_gene_4734_tx_2 1 + 379224 380253 . 1 1030 0 -chrX 379445 380253 HC_gene_4734_tx_3 6 + 379445 380253 . 1 809 0 -chrX 379594 380253 HC_gene_4734_tx_4 1 + 379594 380253 . 2 66,386 0,274 -chrX 379594 380253 HC_gene_4734_tx_5 7 + 379594 380253 . 1 660 0 -chrX 379802 380253 HC_gene_4734_tx_6 9 + 379802 380253 . 1 452 0 -chrX 380162 380513 HC_gene_5028_tx_1 6 - 380162 380513 . 1 352 0 -chrX 380162 380661 HC_gene_5028_tx_2 3 - 380162 380661 . 1 500 0 -chrX 380162 381050 HC_gene_5028_tx_3 16 - 380162 381050 . 1 889 0 -chrX 380642 381272 MC_gene_4735_tx_1 1 + 380642 381272 . 1 631 0 -chrX 381288 383406 HC_gene_4736_tx_1 16 + 381288 383406 . 1 2119 0 -chrX 381288 383406 HC_gene_4736_tx_2 1 + 381288 383406 . 2 1276,798 0,1321 -chrX 381288 383500 HC_gene_4736_tx_3 27 + 381288 383500 . 1 2213 0 -chrX 381288 383500 HC_gene_4736_tx_4 1 + 381288 383500 . 2 450,846 0,1367 -chrX 381288 383500 HC_gene_4736_tx_5 1 + 381288 383500 . 2 1453,689 0,1524 -chrX 381288 383500 HC_gene_4736_tx_6 1 + 381288 383500 . 2 1325,792 0,1421 -chrX 381288 383629 HC_gene_4736_tx_7 151 + 381288 383629 . 1 2342 0 -chrX 381288 383629 HC_gene_4736_tx_8 1 + 381288 383629 . 3 216,316,834 0,487,1508 -chrX 381288 383629 HC_gene_4736_tx_9 1 + 381288 383629 . 3 95,239,1855 0,161,487 -chrX 381288 383629 HC_gene_4736_tx_10 1 + 381288 383629 . 2 1530,744 0,1598 -chrX 381288 383629 HC_gene_4736_tx_11 1 + 381288 383629 . 2 2130,100 0,2242 -chrX 381288 383629 HC_gene_4736_tx_12 1 + 381288 383629 . 2 2168,100 0,2242 -chrX 381288 383629 HC_gene_4736_tx_13 1 + 381288 383629 . 2 803,1039 0,1303 -chrX 381288 383629 HC_gene_4736_tx_14 1 + 381288 383629 . 2 2186,100 0,2242 -chrX 381288 383629 HC_gene_4736_tx_15 1 + 381288 383629 . 2 2113,100 0,2242 -chrX 381288 383629 HC_gene_4736_tx_16 1 + 381288 383629 . 2 1885,111 0,2231 -chrX 381288 383629 HC_gene_4736_tx_17 1 + 381288 383629 . 2 1157,942 0,1400 -chrX 381288 383629 HC_gene_4736_tx_18 1 + 381288 383629 . 2 1318,947 0,1395 -chrX 381288 383629 HC_gene_4736_tx_19 1 + 381288 383629 . 2 722,1557 0,785 -chrX 381288 383629 HC_gene_4736_tx_20 1 + 381288 383629 . 2 1211,1048 0,1294 -chrX 381288 383629 HC_gene_4736_tx_21 1 + 381288 383629 . 2 118,1329 0,1013 -chrX 382615 383406 HC_gene_4736_tx_22 2 + 382615 383406 . 1 792 0 -chrX 382615 383500 HC_gene_4736_tx_23 1 + 382615 383500 . 2 432,377 0,509 -chrX 382615 383500 HC_gene_4736_tx_24 9 + 382615 383500 . 1 886 0 -chrX 382615 383629 HC_gene_4736_tx_25 33 + 382615 383629 . 1 1015 0 -chrX 382615 383629 HC_gene_4736_tx_26 1 + 382615 383629 . 2 249,700 0,315 -chrX 382615 383629 HC_gene_4736_tx_27 1 + 382615 383629 . 2 110,648 0,367 -chrX 382615 383629 HC_gene_4736_tx_28 1 + 382615 383629 . 2 803,118 0,897 -chrX 382615 383629 HC_gene_4736_tx_29 1 + 382615 383629 . 2 786,100 0,915 -chrX 382789 383406 HC_gene_4736_tx_30 3 + 382789 383406 . 1 618 0 -chrX 382789 383500 HC_gene_4736_tx_31 7 + 382789 383500 . 1 712 0 -chrX 382789 383629 HC_gene_4736_tx_32 39 + 382789 383629 . 1 841 0 -chrX 382789 383629 HC_gene_4736_tx_33 1 + 382789 383629 . 2 685,100 0,741 -chrX 382864 383406 HC_gene_4736_tx_34 7 + 382864 383406 . 1 543 0 -chrX 382864 383500 HC_gene_4736_tx_35 18 + 382864 383500 . 1 637 0 -chrX 382864 383629 HC_gene_4736_tx_36 103 + 382864 383629 . 1 766 0 -chrX 383019 383500 HC_gene_4736_tx_37 6 + 383019 383500 . 1 482 0 -chrX 383019 383629 HC_gene_4736_tx_38 50 + 383019 383629 . 1 611 0 -chrX 383295 383500 HC_gene_4736_tx_39 2 + 383295 383500 . 1 206 0 -chrX 383295 383629 HC_gene_4736_tx_40 55 + 383295 383629 . 1 335 0 -chrX 383810 385240 HC_gene_4737_tx_1 1 + 383810 385240 . 1 1431 0 -chrX 383810 386233 HC_gene_4737_tx_2 16 + 383810 386233 . 1 2424 0 -chrX 383810 386233 HC_gene_4737_tx_3 1 + 383810 386233 . 2 1204,1103 0,1321 -chrX 383810 386233 HC_gene_4737_tx_4 1 + 383810 386233 . 2 976,1313 0,1111 -chrX 383810 386233 HC_gene_4737_tx_5 1 + 383810 386233 . 2 1590,779 0,1645 -chrX 384954 386233 HC_gene_4737_tx_6 1 + 384954 386233 . 3 138,246,284 0,493,996 -chrX 384954 386233 HC_gene_4737_tx_7 3 + 384954 386233 . 1 1280 0 -chrX 385184 386233 HC_gene_4737_tx_8 3 + 385184 386233 . 1 1050 0 -chrX 385689 386233 HC_gene_4737_tx_9 22 + 385689 386233 . 1 545 0 -chrX 385743 386233 HC_gene_4737_tx_10 12 + 385743 386233 . 1 491 0 -chrX 386113 386853 HC_gene_5029_tx_1 1 - 386113 386853 . 1 741 0 -chrX 386113 387447 HC_gene_5029_tx_2 1 - 386113 387447 . 1 1335 0 -chrX 386113 387505 HC_gene_5029_tx_3 1 - 386113 387505 . 2 1236,62 0,1331 -chrX 386252 387355 HC_gene_5029_tx_4 1 - 386252 387355 . 1 1104 0 -chrX 386252 387447 HC_gene_5029_tx_5 1 - 386252 387447 . 1 1196 0 -chrX 386308 386753 HC_gene_5029_tx_12 5 - 386308 386753 . 1 446 0 -chrX 386308 386853 HC_gene_5029_tx_13 5 - 386308 386853 . 1 546 0 -chrX 386308 386917 HC_gene_5029_tx_14 1 - 386308 386917 . 1 610 0 -chrX 386308 387130 HC_gene_5029_tx_15 6 - 386308 387130 . 1 823 0 -chrX 386308 387355 HC_gene_5029_tx_6 15 - 386308 387355 . 1 1048 0 -chrX 386308 387447 HC_gene_5029_tx_7 31 - 386308 387447 . 1 1140 0 -chrX 386308 387447 HC_gene_5029_tx_8 1 - 386308 387447 . 2 352,724 0,416 -chrX 386308 387470 HC_gene_5029_tx_9 1 - 386308 387470 . 2 1041,35 0,1128 -chrX 386308 387476 HC_gene_5029_tx_10 1 - 386308 387476 . 2 1041,41 0,1128 -chrX 386308 387504 HC_gene_5029_tx_11 1 - 386308 387504 . 2 1041,69 0,1128 -chrX 386630 387104 LC_gene_4738_tx_1 1 + 386630 387104 . 1 475 0 -chrX 387633 388388 HC_gene_4739_tx_1 41 + 387633 388388 . 1 756 0 -chrX 387697 388160 LC_gene_5030_tx_1 1 - 387697 388160 . 1 464 0 -chrX 387858 388388 HC_gene_4739_tx_2 10 + 387858 388388 . 1 531 0 -chrX 387929 388388 HC_gene_4739_tx_3 4 + 387929 388388 . 1 460 0 -chrX 388284 388603 HC_gene_5031_tx_1 4 - 388284 388603 . 1 320 0 -chrX 388284 390855 HC_gene_5031_tx_2 5 - 388284 390855 . 1 2572 0 -chrX 388364 390085 LC_gene_4740_tx_1 1 + 388364 390085 . 1 1722 0 -chrX 390928 391432 MC_gene_5032_tx_1 1 - 390928 391432 . 1 505 0 -chrX 391780 392726 LC_gene_5033_tx_1 1 - 391780 392726 . 1 947 0 -chrX 392230 393758 HC_gene_4741_tx_1 13 + 392230 393758 . 1 1529 0 -chrX 392350 393758 HC_gene_4741_tx_2 255 + 392350 393758 . 1 1409 0 -chrX 392350 393758 HC_gene_4741_tx_3 1 + 392350 393758 . 2 1274,64 0,1345 -chrX 392350 393758 HC_gene_4741_tx_4 1 + 392350 393758 . 2 1304,49 0,1360 -chrX 392350 393758 HC_gene_4741_tx_5 1 + 392350 393758 . 2 421,624 0,785 -chrX 392357 393758 HC_gene_4741_tx_6 1 + 392357 393758 . 2 439,365 0,1037 -chrX 392557 393758 HC_gene_4741_tx_7 43 + 392557 393758 . 1 1202 0 -chrX 392557 393758 HC_gene_4741_tx_8 1 + 392557 393758 . 2 299,848 0,354 -chrX 392627 393758 HC_gene_4741_tx_9 32 + 392627 393758 . 1 1132 0 -chrX 392627 393758 HC_gene_4741_tx_10 1 + 392627 393758 . 2 987,91 0,1041 -chrX 392627 393758 HC_gene_4741_tx_11 1 + 392627 393758 . 2 788,227 0,905 -chrX 392794 393758 HC_gene_4741_tx_12 35 + 392794 393758 . 1 965 0 -chrX 392896 393758 HC_gene_4741_tx_13 44 + 392896 393758 . 1 863 0 -chrX 393218 393758 HC_gene_4741_tx_14 73 + 393218 393758 . 1 541 0 -chrX 393222 393647 LC_gene_5034_tx_1 1 - 393222 393647 . 1 426 0 -chrX 393313 393758 HC_gene_4741_tx_15 40 + 393313 393758 . 1 446 0 -chrX 393417 393758 HC_gene_4741_tx_16 16 + 393417 393758 . 1 342 0 -chrX 393902 395639 HC_gene_4742_tx_1 13 + 393902 395639 . 1 1738 0 -chrX 393902 395715 HC_gene_4742_tx_2 2 + 393902 395715 . 1 1814 0 -chrX 395543 396101 HC_gene_5035_tx_1 1 - 395543 396101 . 1 559 0 -chrX 395543 396614 HC_gene_5035_tx_2 11 - 395543 396614 . 1 1072 0 -chrX 395543 396614 HC_gene_5035_tx_3 5 - 395543 396614 . 2 951,44 0,1028 -chrX 395543 396614 HC_gene_5035_tx_4 2 - 395543 396614 . 2 951,48 0,1024 -chrX 395697 396101 HC_gene_5035_tx_8 8 - 395697 396101 . 1 405 0 -chrX 395697 396614 HC_gene_5035_tx_5 31 - 395697 396614 . 1 918 0 -chrX 395697 396614 HC_gene_5035_tx_6 9 - 395697 396614 . 2 797,44 0,874 -chrX 395697 396614 HC_gene_5035_tx_7 3 - 395697 396614 . 2 797,48 0,870 -chrX 397089 398376 HC_gene_5036_tx_1 1 - 397089 398376 . 1 1288 0 -chrX 397108 398161 HC_gene_5036_tx_2 1 - 397108 398161 . 1 1054 0 -chrX 397236 398024 HC_gene_5036_tx_3 2 - 397236 398024 . 1 789 0 -chrX 397236 398161 HC_gene_5036_tx_4 2 - 397236 398161 . 1 926 0 -chrX 397236 398376 HC_gene_5036_tx_5 13 - 397236 398376 . 1 1141 0 -chrX 397236 398561 HC_gene_5036_tx_6 2 - 397236 398561 . 1 1326 0 -chrX 398266 398876 MC_gene_4743_tx_1 1 + 398266 398876 . 1 611 0 -chrX 398336 398939 MC_gene_4743_tx_2 1 + 398336 398939 . 1 604 0 -chrX 398557 398976 MC_gene_4744_tx_1 1 + 398557 398976 . 1 420 0 -chrX 398780 399344 HC_gene_5037_tx_1 11 - 398780 399344 . 1 565 0 -chrX 398780 399554 HC_gene_5037_tx_2 13 - 398780 399554 . 1 775 0 -chrX 398780 400352 HC_gene_5037_tx_3 3 - 398780 400352 . 1 1573 0 -chrX 398780 400477 HC_gene_5037_tx_4 4 - 398780 400477 . 1 1698 0 -chrX 398780 401020 HC_gene_5037_tx_5 3 - 398780 401020 . 1 2241 0 -chrX 398780 401020 HC_gene_5037_tx_6 1 - 398780 401020 . 2 1221,705 0,1536 -chrX 398780 401441 HC_gene_5037_tx_7 3 - 398780 401441 . 1 2662 0 -chrX 398780 402503 HC_gene_5037_tx_8 1 - 398780 402503 . 1 3724 0 -chrX 402574 403083 MC_gene_5038_tx_1 1 - 402574 403083 . 1 510 0 -chrX 402796 405525 HC_gene_4745_tx_1 2 + 402796 405525 . 1 2730 0 -chrX 404291 405122 MC_gene_5039_tx_1 1 - 404291 405122 . 1 832 0 -chrX 405095 405525 HC_gene_4745_tx_2 3 + 405095 405525 . 1 431 0 -chrX 405251 407378 HC_gene_4746_tx_1 2 + 405251 407378 . 1 2128 0 -chrX 405251 407379 HC_gene_4746_tx_2 1 + 405251 407379 . 1 2129 0 -chrX 405251 407383 HC_gene_4746_tx_3 1 + 405251 407383 . 1 2133 0 -chrX 405251 407416 HC_gene_4746_tx_4 1 + 405251 407416 . 1 2166 0 -chrX 405376 406539 LC_gene_5040_tx_1 1 - 405376 406539 . 1 1164 0 -chrX 405417 407367 HC_gene_4746_tx_5 1 + 405417 407367 . 1 1951 0 -chrX 405417 407370 HC_gene_4746_tx_6 1 + 405417 407370 . 1 1954 0 -chrX 405417 407389 HC_gene_4746_tx_7 1 + 405417 407389 . 1 1973 0 -chrX 405417 407397 HC_gene_4746_tx_8 1 + 405417 407397 . 1 1981 0 -chrX 405417 407407 HC_gene_4746_tx_9 1 + 405417 407407 . 1 1991 0 -chrX 405417 407416 HC_gene_4746_tx_10 3 + 405417 407416 . 1 2000 0 -chrX 405417 407416 HC_gene_4746_tx_11 1 + 405417 407416 . 2 524,1410 0,590 -chrX 406943 407318 LC_gene_5041_tx_1 1 - 406943 407318 . 1 376 0 -chrX 407532 409284 HC_gene_4747_tx_1 133 + 407532 409284 . 1 1753 0 -chrX 407532 409284 HC_gene_4747_tx_2 1 + 407532 409284 . 2 789,855 0,898 -chrX 407532 409284 HC_gene_4747_tx_3 1 + 407532 409284 . 2 1034,631 0,1122 -chrX 407532 409284 HC_gene_4747_tx_4 1 + 407532 409284 . 2 876,783 0,970 -chrX 407532 409284 HC_gene_4747_tx_5 1 + 407532 409284 . 2 727,847 0,906 -chrX 408222 409284 HC_gene_4747_tx_6 26 + 408222 409284 . 1 1063 0 -chrX 408222 409284 HC_gene_4747_tx_7 1 + 408222 409284 . 2 590,367 0,696 -chrX 408354 409284 HC_gene_4747_tx_8 29 + 408354 409284 . 1 931 0 -chrX 408496 409284 HC_gene_4747_tx_9 32 + 408496 409284 . 1 789 0 -chrX 409322 410205 HC_gene_5042_tx_1 2 - 409322 410205 . 1 884 0 -chrX 409322 411033 HC_gene_5042_tx_2 19 - 409322 411033 . 1 1712 0 -chrX 410654 411236 MC_gene_4748_tx_1 1 + 410654 411236 . 1 583 0 -chrX 411154 411473 HC_gene_5043_tx_1 10 - 411154 411473 . 1 320 0 -chrX 411154 411779 HC_gene_5043_tx_2 17 - 411154 411779 . 1 626 0 -chrX 411154 412081 HC_gene_5043_tx_3 8 - 411154 412081 . 1 928 0 -chrX 411154 412391 HC_gene_5043_tx_4 3 - 411154 412391 . 1 1238 0 -chrX 411154 412471 HC_gene_5043_tx_5 5 - 411154 412471 . 1 1318 0 -chrX 411154 412592 HC_gene_5043_tx_6 8 - 411154 412592 . 1 1439 0 -chrX 411154 412852 HC_gene_5043_tx_7 4 - 411154 412852 . 1 1699 0 -chrX 411154 412984 HC_gene_5043_tx_8 2 - 411154 412984 . 1 1831 0 -chrX 411154 413277 HC_gene_5043_tx_9 4 - 411154 413277 . 1 2124 0 -chrX 411154 413415 HC_gene_5043_tx_10 20 - 411154 413415 . 1 2262 0 -chrX 411154 413415 HC_gene_5043_tx_11 1 - 411154 413415 . 2 1009,1184 0,1078 -chrX 411154 413415 HC_gene_5043_tx_12 1 - 411154 413415 . 2 969,660 0,1602 -chrX 411154 413415 HC_gene_5043_tx_13 1 - 411154 413415 . 2 1163,615 0,1647 -chrX 411154 413434 HC_gene_5043_tx_14 1 - 411154 413434 . 2 1068,1045 0,1236 -chrX 413612 413864 MC_gene_4749_tx_1 1 + 413612 413864 . 1 253 0 -chrX 413675 413927 MC_gene_4750_tx_1 1 + 413675 413927 . 1 253 0 -chrX 413839 414811 HC_gene_5044_tx_1 2 - 413839 414811 . 1 973 0 -chrX 414001 414597 HC_gene_5044_tx_4 2 - 414001 414597 . 1 597 0 -chrX 414001 414811 HC_gene_5044_tx_2 8 - 414001 414811 . 1 811 0 -chrX 414110 414597 HC_gene_5044_tx_5 15 - 414110 414597 . 1 488 0 -chrX 414110 414811 HC_gene_5044_tx_3 58 - 414110 414811 . 1 702 0 -chrX 414381 414962 LC_gene_4751_tx_1 1 + 414381 414962 . 1 582 0 -chrX 415188 415427 HC_gene_4752_tx_1 7 + 415188 415427 . 1 240 0 -chrX 416506 416917 LC_gene_4753_tx_1 1 + 416506 416917 . 1 412 0 -chrX 416678 417283 HC_gene_5045_tx_1 6 - 416678 417283 . 1 606 0 -chrX 417226 419588 HC_gene_5046_tx_1 1 - 417226 419588 . 1 2363 0 -chrX 417350 419588 HC_gene_5046_tx_2 1 - 417350 419588 . 1 2239 0 -chrX 417480 419588 HC_gene_5046_tx_3 41 - 417480 419588 . 1 2109 0 -chrX 417480 419588 HC_gene_5046_tx_4 1 - 417480 419588 . 2 842,1219 0,890 -chrX 417480 419588 HC_gene_5046_tx_5 1 - 417480 419588 . 2 1273,780 0,1329 -chrX 417480 419588 HC_gene_5046_tx_6 1 - 417480 419588 . 2 929,1124 0,985 -chrX 417554 417820 LC_gene_4754_tx_1 1 + 417554 417820 . 1 267 0 -chrX 419754 420415 HC_gene_5047_tx_1 25 - 419754 420415 . 1 662 0 -chrX 419754 420780 HC_gene_5047_tx_2 28 - 419754 420780 . 1 1027 0 -chrX 419754 421021 HC_gene_5047_tx_3 7 - 419754 421021 . 1 1268 0 -chrX 419754 421302 HC_gene_5047_tx_4 18 - 419754 421302 . 1 1549 0 -chrX 419754 421710 HC_gene_5047_tx_7 118 - 419754 421710 . 1 1957 0 -chrX 419754 421710 HC_gene_5047_tx_8 1 - 419754 421710 . 2 84,1731 0,226 -chrX 419754 421710 HC_gene_5047_tx_9 1 - 419754 421710 . 2 84,1749 0,208 -chrX 419754 421710 HC_gene_5047_tx_10 1 - 419754 421710 . 2 137,1750 0,207 -chrX 419754 421710 HC_gene_5047_tx_11 1 - 419754 421710 . 2 147,1750 0,207 -chrX 419874 420780 HC_gene_5047_tx_5 1 - 419874 420780 . 1 907 0 -chrX 419878 421710 HC_gene_5047_tx_12 1 - 419878 421710 . 1 1833 0 -chrX 419879 421710 HC_gene_5047_tx_13 1 - 419879 421710 . 1 1832 0 -chrX 419882 421302 HC_gene_5047_tx_6 1 - 419882 421302 . 1 1421 0 -chrX 421895 422285 HC_gene_4755_tx_1 5 + 421895 422285 . 1 391 0 -chrX 421895 422522 HC_gene_4755_tx_2 13 + 421895 422522 . 1 628 0 -chrX 422655 423125 MC_gene_4756_tx_1 1 + 422655 423125 . 1 471 0 -chrX 423083 424158 HC_gene_5048_tx_1 38 - 423083 424158 . 1 1076 0 -chrX 424516 424854 MC_gene_5049_tx_1 1 - 424516 424854 . 1 339 0 -chrX 429732 431388 HC_gene_4757_tx_1 1 + 429732 431388 . 1 1657 0 -chrX 429732 431390 HC_gene_4757_tx_2 1 + 429732 431390 . 1 1659 0 -chrX 429732 431416 HC_gene_4757_tx_3 1 + 429732 431416 . 1 1685 0 -chrX 431305 431691 HC_gene_5050_tx_1 32 - 431305 431691 . 1 387 0 -chrX 431305 431894 HC_gene_5050_tx_2 20 - 431305 431894 . 1 590 0 -chrX 431305 431971 HC_gene_5050_tx_3 4 - 431305 431971 . 1 667 0 -chrX 431305 432031 HC_gene_5050_tx_4 7 - 431305 432031 . 1 727 0 -chrX 431305 432214 HC_gene_5050_tx_5 71 - 431305 432214 . 1 910 0 -chrX 432485 433188 HC_gene_4758_tx_1 5 + 432485 433188 . 1 704 0 -chrX 432596 433188 HC_gene_4758_tx_2 77 + 432596 433188 . 1 593 0 -chrX 432810 433188 HC_gene_4758_tx_3 8 + 432810 433188 . 1 379 0 -chrX 433109 433493 HC_gene_5051_tx_1 45 - 433109 433493 . 1 385 0 -chrX 433109 433583 HC_gene_5051_tx_2 28 - 433109 433583 . 1 475 0 -chrX 433109 433726 HC_gene_5051_tx_3 40 - 433109 433726 . 1 618 0 -chrX 433109 434387 HC_gene_5051_tx_4 20 - 433109 434387 . 1 1279 0 -chrX 433109 434557 HC_gene_5051_tx_5 18 - 433109 434557 . 1 1449 0 -chrX 433109 434708 HC_gene_5051_tx_6 99 - 433109 434708 . 1 1600 0 -chrX 433109 434708 HC_gene_5051_tx_7 1 - 433109 434708 . 2 106,1376 0,224 -chrX 433109 434708 HC_gene_5051_tx_8 1 - 433109 434708 . 2 966,370 0,1230 -chrX 433109 434956 HC_gene_5051_tx_9 1 - 433109 434956 . 1 1848 0 -chrX 433398 433726 HC_gene_5051_tx_13 1 - 433398 433726 . 1 329 0 -chrX 433398 434387 HC_gene_5051_tx_10 1 - 433398 434387 . 1 990 0 -chrX 433398 434557 HC_gene_5051_tx_11 1 - 433398 434557 . 1 1160 0 -chrX 433398 434708 HC_gene_5051_tx_12 1 - 433398 434708 . 1 1311 0 -chrX 434925 436040 HC_gene_4759_tx_1 4 + 434925 436040 . 2 303,697 0,419 -chrX 434925 436040 HC_gene_4759_tx_2 2 + 434925 436040 . 1 1116 0 -chrX 434925 436148 HC_gene_4759_tx_3 1 + 434925 436148 . 2 303,805 0,419 -chrX 435122 436040 HC_gene_4759_tx_4 19 + 435122 436040 . 1 919 0 -chrX 435122 436040 HC_gene_4759_tx_5 214 + 435122 436040 . 2 106,697 0,222 -chrX 435122 436040 HC_gene_4759_tx_6 1 + 435122 436040 . 2 42,611 0,308 -chrX 435122 436040 HC_gene_4759_tx_7 1 + 435122 436040 . 2 144,646 0,273 -chrX 435122 436040 HC_gene_4759_tx_8 1 + 435122 436040 . 2 106,682 0,237 -chrX 435122 436040 HC_gene_4759_tx_9 2 + 435122 436040 . 2 96,697 0,222 -chrX 435122 436040 HC_gene_4759_tx_10 1 + 435122 436040 . 2 106,724 0,195 -chrX 435122 436148 HC_gene_4759_tx_11 8 + 435122 436148 . 1 1027 0 -chrX 435122 436148 HC_gene_4759_tx_12 51 + 435122 436148 . 2 106,805 0,222 -chrX 435122 436148 HC_gene_4759_tx_13 1 + 435122 436148 . 2 110,805 0,222 -chrX 435122 436148 HC_gene_4759_tx_14 1 + 435122 436148 . 2 106,832 0,195 -chrX 435405 436040 HC_gene_4759_tx_15 178 + 435405 436040 . 1 636 0 -chrX 435405 436040 HC_gene_4759_tx_16 1 + 435405 436040 . 2 73,522 0,114 -chrX 435405 436148 HC_gene_4759_tx_17 36 + 435405 436148 . 1 744 0 -chrX 435546 436040 HC_gene_4759_tx_18 21 + 435546 436040 . 1 495 0 -chrX 435546 436148 HC_gene_4759_tx_19 8 + 435546 436148 . 1 603 0 -chrX 435658 436040 HC_gene_4759_tx_21 53 + 435658 436040 . 1 383 0 -chrX 435658 436148 HC_gene_4759_tx_20 15 + 435658 436148 . 1 491 0 -chrX 436722 438572 MC_gene_5052_tx_1 1 - 436722 438572 . 1 1851 0 -chrX 436745 438741 HC_gene_4760_tx_1 58 + 436745 438741 . 1 1997 0 -chrX 436745 438741 HC_gene_4760_tx_2 1 + 436745 438741 . 2 996,928 0,1069 -chrX 436745 438741 HC_gene_4760_tx_3 1 + 436745 438741 . 2 462,1176 0,821 -chrX 436745 438741 HC_gene_4760_tx_4 1 + 436745 438741 . 2 1366,427 0,1570 -chrX 436745 438741 HC_gene_4760_tx_5 1 + 436745 438741 . 2 972,896 0,1101 -chrX 436745 438741 HC_gene_4760_tx_6 1 + 436745 438741 . 2 942,943 0,1054 -chrX 438347 438741 HC_gene_4760_tx_7 24 + 438347 438741 . 1 395 0 -chrX 438834 440719 HC_gene_4761_tx_1 2 + 438834 440719 . 1 1886 0 -chrX 438834 440741 HC_gene_4761_tx_2 1 + 438834 440741 . 1 1908 0 -chrX 438834 440759 HC_gene_4761_tx_3 1 + 438834 440759 . 1 1926 0 -chrX 438834 440855 HC_gene_4761_tx_4 1 + 438834 440855 . 1 2022 0 -chrX 438834 440858 HC_gene_4761_tx_5 1 + 438834 440858 . 1 2025 0 -chrX 438834 440860 HC_gene_4761_tx_6 1 + 438834 440860 . 1 2027 0 -chrX 438834 440867 HC_gene_4761_tx_7 3 + 438834 440867 . 1 2034 0 -chrX 438834 440992 HC_gene_4761_tx_8 3 + 438834 440992 . 1 2159 0 -chrX 438834 440996 HC_gene_4761_tx_9 1 + 438834 440996 . 2 710,1394 0,769 -chrX 438834 440997 HC_gene_4761_tx_10 2 + 438834 440997 . 1 2164 0 -chrX 438834 440999 HC_gene_4761_tx_11 1 + 438834 440999 . 2 232,1839 0,327 -chrX 438834 440999 HC_gene_4761_tx_12 2 + 438834 440999 . 1 2166 0 -chrX 438834 441000 HC_gene_4761_tx_13 1 + 438834 441000 . 1 2167 0 -chrX 438834 441002 HC_gene_4761_tx_14 1 + 438834 441002 . 1 2169 0 -chrX 438834 441003 HC_gene_4761_tx_15 2 + 438834 441003 . 1 2170 0 -chrX 438834 441004 HC_gene_4761_tx_16 1 + 438834 441004 . 1 2171 0 -chrX 438834 441006 HC_gene_4761_tx_17 1 + 438834 441006 . 1 2173 0 -chrX 438834 441008 HC_gene_4761_tx_18 1 + 438834 441008 . 1 2175 0 -chrX 438834 441009 HC_gene_4761_tx_19 2 + 438834 441009 . 1 2176 0 -chrX 438834 441010 HC_gene_4761_tx_20 1 + 438834 441010 . 1 2177 0 -chrX 438834 441012 HC_gene_4761_tx_21 1 + 438834 441012 . 1 2179 0 -chrX 438834 441022 HC_gene_4761_tx_22 1 + 438834 441022 . 1 2189 0 -chrX 438834 441024 HC_gene_4761_tx_23 1 + 438834 441024 . 1 2191 0 -chrX 438834 441028 HC_gene_4761_tx_24 1 + 438834 441028 . 1 2195 0 -chrX 438834 441034 HC_gene_4761_tx_25 1 + 438834 441034 . 1 2201 0 -chrX 438834 441042 HC_gene_4761_tx_26 1 + 438834 441042 . 1 2209 0 -chrX 438834 441050 HC_gene_4761_tx_27 2 + 438834 441050 . 1 2217 0 -chrX 438834 441342 HC_gene_4761_tx_28 1 + 438834 441342 . 1 2509 0 -chrX 439181 440718 HC_gene_4761_tx_29 1 + 439181 440718 . 1 1538 0 -chrX 439181 440999 HC_gene_4761_tx_30 1 + 439181 440999 . 1 1819 0 -chrX 439181 441009 HC_gene_4761_tx_31 1 + 439181 441009 . 1 1829 0 -chrX 439181 441034 HC_gene_4761_tx_32 1 + 439181 441034 . 1 1854 0 -chrX 439181 441041 HC_gene_4761_tx_33 1 + 439181 441041 . 1 1861 0 -chrX 439181 441048 HC_gene_4761_tx_34 1 + 439181 441048 . 1 1868 0 -chrX 439551 440750 HC_gene_4761_tx_35 1 + 439551 440750 . 1 1200 0 -chrX 439551 440993 HC_gene_4761_tx_36 1 + 439551 440993 . 1 1443 0 -chrX 439551 441002 HC_gene_4761_tx_37 1 + 439551 441002 . 1 1452 0 -chrX 439551 441013 HC_gene_4761_tx_38 1 + 439551 441013 . 1 1463 0 -chrX 439727 440992 HC_gene_4761_tx_39 2 + 439727 440992 . 1 1266 0 -chrX 439727 440996 HC_gene_4761_tx_40 1 + 439727 440996 . 1 1270 0 -chrX 439727 441002 HC_gene_4761_tx_41 1 + 439727 441002 . 1 1276 0 -chrX 439727 441012 HC_gene_4761_tx_42 1 + 439727 441012 . 1 1286 0 -chrX 439727 441020 HC_gene_4761_tx_43 1 + 439727 441020 . 1 1294 0 -chrX 439827 440746 HC_gene_4761_tx_44 1 + 439827 440746 . 1 920 0 -chrX 439827 440759 HC_gene_4761_tx_45 1 + 439827 440759 . 1 933 0 -chrX 439827 440864 HC_gene_4761_tx_46 1 + 439827 440864 . 1 1038 0 -chrX 439827 440994 HC_gene_4761_tx_47 1 + 439827 440994 . 1 1168 0 -chrX 439827 440997 HC_gene_4761_tx_48 1 + 439827 440997 . 1 1171 0 -chrX 439827 441034 HC_gene_4761_tx_49 1 + 439827 441034 . 2 694,463 0,745 -chrX 440455 440857 HC_gene_4761_tx_50 1 + 440455 440857 . 1 403 0 -chrX 440455 440992 HC_gene_4761_tx_51 2 + 440455 440992 . 1 538 0 -chrX 440455 440993 HC_gene_4761_tx_52 2 + 440455 440993 . 1 539 0 -chrX 440455 441008 HC_gene_4761_tx_53 2 + 440455 441008 . 1 554 0 -chrX 440455 441009 HC_gene_4761_tx_54 1 + 440455 441009 . 1 555 0 -chrX 440455 441034 HC_gene_4761_tx_55 1 + 440455 441034 . 1 580 0 -chrX 440455 441049 HC_gene_4761_tx_56 1 + 440455 441049 . 1 595 0 -chrX 440455 441096 HC_gene_4761_tx_57 1 + 440455 441096 . 1 642 0 -chrX 440642 442565 HC_gene_5053_tx_1 3 - 440642 442565 . 1 1924 0 -chrX 440905 442565 HC_gene_5053_tx_2 10 - 440905 442565 . 1 1661 0 -chrX 442673 443188 HC_gene_5054_tx_1 140 - 442673 443188 . 1 516 0 -chrX 442768 443188 HC_gene_5054_tx_2 137 - 442768 443188 . 1 421 0 -chrX 442841 445419 HC_gene_4762_tx_1 1 + 442841 445419 . 1 2579 0 -chrX 445331 445688 HC_gene_5055_tx_1 4 - 445331 445688 . 1 358 0 -chrX 445865 446873 HC_gene_4763_tx_1 1 + 445865 446873 . 1 1009 0 -chrX 445865 447006 HC_gene_4763_tx_2 2 + 445865 447006 . 1 1142 0 -chrX 445865 448314 HC_gene_4763_tx_3 12 + 445865 448314 . 1 2450 0 -chrX 445865 448314 HC_gene_4763_tx_4 1 + 445865 448314 . 2 1745,587 0,1863 -chrX 445865 448314 HC_gene_4763_tx_5 1 + 445865 448314 . 2 1583,792 0,1658 -chrX 445865 448314 HC_gene_4763_tx_6 1 + 445865 448314 . 2 1289,1074 0,1376 -chrX 445967 448314 HC_gene_4763_tx_7 1 + 445967 448314 . 1 2348 0 -chrX 446883 448314 HC_gene_4763_tx_8 2 + 446883 448314 . 1 1432 0 -chrX 447612 448314 HC_gene_4763_tx_9 1 + 447612 448314 . 1 703 0 -chrX 447663 448314 HC_gene_4763_tx_10 8 + 447663 448314 . 1 652 0 -chrX 448213 448780 MC_gene_5056_tx_1 1 - 448213 448780 . 1 568 0 -chrX 449045 450593 MC_gene_5057_tx_1 1 - 449045 450593 . 1 1549 0 -chrX 449193 450719 HC_gene_4764_tx_1 33 + 449193 450719 . 1 1527 0 -chrX 449193 450719 HC_gene_4764_tx_2 1 + 449193 450719 . 2 498,656 0,871 -chrX 449193 450899 HC_gene_4764_tx_3 4 + 449193 450899 . 1 1707 0 -chrX 450923 452022 HC_gene_4765_tx_1 342 + 450923 452022 . 1 1100 0 -chrX 451113 452022 HC_gene_4765_tx_2 35 + 451113 452022 . 1 910 0 -chrX 451368 452022 HC_gene_4765_tx_3 105 + 451368 452022 . 1 655 0 -chrX 451563 452022 HC_gene_4765_tx_4 22 + 451563 452022 . 1 460 0 -chrX 451741 452863 MC_gene_5058_tx_1 1 - 451741 452863 . 1 1123 0 -chrX 452318 453524 HC_gene_4766_tx_1 5 + 452318 453524 . 1 1207 0 -chrX 453543 453873 HC_gene_5059_tx_1 643 - 453543 453873 . 1 331 0 -chrX 453543 454000 HC_gene_5059_tx_2 319 - 453543 454000 . 1 458 0 -chrX 453543 454170 HC_gene_5059_tx_3 1312 - 453543 454170 . 1 628 0 -chrX 453543 454332 HC_gene_5059_tx_4 431 - 453543 454332 . 1 790 0 -chrX 453543 454426 HC_gene_5059_tx_5 291 - 453543 454426 . 1 884 0 -chrX 453543 454599 HC_gene_5059_tx_6 191 - 453543 454599 . 1 1057 0 -chrX 453543 454729 HC_gene_5059_tx_7 4705 - 453543 454729 . 1 1187 0 -chrX 456026 456258 HC_gene_4767_tx_1 1 + 456026 456258 . 1 233 0 -chrX 456035 456258 HC_gene_4767_tx_2 3 + 456035 456258 . 1 224 0 -chrX 456035 456401 HC_gene_4768_tx_1 1 + 456035 456401 . 1 367 0 -chrX 456035 456733 HC_gene_4768_tx_2 1 + 456035 456733 . 1 699 0 -chrX 456107 457782 LC_gene_5060_tx_1 1 - 456107 457782 . 1 1676 0 -chrX 456199 456733 HC_gene_4768_tx_3 1 + 456199 456733 . 1 535 0 -chrX 456467 456733 HC_gene_4768_tx_4 1 + 456467 456733 . 1 267 0 -chrX 456854 457791 MC_gene_4769_tx_1 1 + 456854 457791 . 1 938 0 -chrX 457813 458392 HC_gene_5061_tx_1 58 - 457813 458392 . 1 580 0 -chrX 457918 458392 HC_gene_5061_tx_2 30 - 457918 458392 . 1 475 0 -chrX 457967 458523 HC_gene_4770_tx_1 1 + 457967 458523 . 1 557 0 -chrX 457967 458663 HC_gene_4770_tx_2 8 + 457967 458663 . 1 697 0 -chrX 457967 458825 HC_gene_4770_tx_3 1 + 457967 458825 . 1 859 0 -chrX 458590 459269 HC_gene_5062_tx_1 1 - 458590 459269 . 1 680 0 -chrX 458590 459472 HC_gene_5062_tx_2 25 - 458590 459472 . 1 883 0 -chrX 459394 459846 HC_gene_4771_tx_1 1 + 459394 459846 . 1 453 0 -chrX 459505 459846 HC_gene_4771_tx_2 13 + 459505 459846 . 1 342 0 -chrX 459505 459947 HC_gene_4771_tx_3 1 + 459505 459947 . 1 443 0 -chrX 459670 460214 HC_gene_5063_tx_1 65 - 459670 460214 . 1 545 0 -chrX 460284 461556 MC_gene_5064_tx_1 1 - 460284 461556 . 1 1273 0 -chrX 460341 460960 HC_gene_4772_tx_1 1 + 460341 460960 . 1 620 0 -chrX 460341 461691 HC_gene_4772_tx_2 21 + 460341 461691 . 1 1351 0 -chrX 460480 461423 MC_gene_5064_tx_2 1 - 460480 461423 . 1 944 0 -chrX 460527 461691 HC_gene_4772_tx_3 4 + 460527 461691 . 1 1165 0 -chrX 461258 461691 HC_gene_4772_tx_4 5 + 461258 461691 . 1 434 0 -chrX 461711 462636 LC_gene_5065_tx_1 1 - 461711 462636 . 1 926 0 -chrX 461768 462790 HC_gene_4773_tx_1 1 + 461768 462790 . 1 1023 0 -chrX 461781 462526 HC_gene_4773_tx_2 189 + 461781 462526 . 1 746 0 -chrX 461781 462628 HC_gene_4773_tx_3 128 + 461781 462628 . 1 848 0 -chrX 461781 462790 HC_gene_4773_tx_4 10 + 461781 462790 . 1 1010 0 -chrX 461781 464318 HC_gene_4773_tx_13 3 + 461781 464318 . 1 2538 0 -chrX 461781 464417 HC_gene_4773_tx_14 3 + 461781 464417 . 1 2637 0 -chrX 461792 462790 HC_gene_4773_tx_5 1 + 461792 462790 . 1 999 0 -chrX 461793 462790 HC_gene_4773_tx_6 1 + 461793 462790 . 1 998 0 -chrX 461808 462790 HC_gene_4773_tx_7 1 + 461808 462790 . 1 983 0 -chrX 461906 462526 HC_gene_4773_tx_8 3 + 461906 462526 . 1 621 0 -chrX 461906 462526 HC_gene_4773_tx_9 1 + 461906 462526 . 2 85,495 0,126 -chrX 461906 462628 HC_gene_4773_tx_10 1 + 461906 462628 . 1 723 0 -chrX 462036 462526 HC_gene_4773_tx_11 39 + 462036 462526 . 1 491 0 -chrX 462036 462628 HC_gene_4773_tx_12 41 + 462036 462628 . 1 593 0 -chrX 462036 462790 HC_gene_4773_tx_16 6 + 462036 462790 . 1 755 0 -chrX 462036 464318 HC_gene_4773_tx_15 2 + 462036 464318 . 1 2283 0 -chrX 462749 464318 HC_gene_4773_tx_17 18 + 462749 464318 . 1 1570 0 -chrX 462749 464417 HC_gene_4773_tx_18 23 + 462749 464417 . 1 1669 0 -chrX 462749 464417 HC_gene_4773_tx_19 1 + 462749 464417 . 2 1509,63 0,1606 -chrX 463234 464417 HC_gene_4773_tx_20 1 + 463234 464417 . 1 1184 0 -chrX 463297 464318 HC_gene_4773_tx_21 3 + 463297 464318 . 1 1022 0 -chrX 463297 464417 HC_gene_4773_tx_22 10 + 463297 464417 . 1 1121 0 -chrX 464287 464758 HC_gene_5066_tx_1 49 - 464287 464758 . 1 472 0 -chrX 464287 465272 HC_gene_5066_tx_2 22 - 464287 465272 . 1 986 0 -chrX 464287 465272 HC_gene_5066_tx_3 1 - 464287 465272 . 2 552,382 0,604 -chrX 464287 465501 HC_gene_5066_tx_4 39 - 464287 465501 . 1 1215 0 -chrX 464287 465747 HC_gene_5066_tx_5 25 - 464287 465747 . 1 1461 0 -chrX 464287 465747 HC_gene_5066_tx_6 1 - 464287 465747 . 2 873,455 0,1006 -chrX 464287 465945 HC_gene_5066_tx_7 10 - 464287 465945 . 1 1659 0 -chrX 464287 466032 HC_gene_5066_tx_8 21 - 464287 466032 . 1 1746 0 -chrX 464287 466105 HC_gene_5066_tx_9 7 - 464287 466105 . 1 1819 0 -chrX 464287 466224 HC_gene_5066_tx_10 141 - 464287 466224 . 1 1938 0 -chrX 464287 466224 HC_gene_5066_tx_11 1 - 464287 466224 . 2 511,646 0,1292 -chrX 464287 466224 HC_gene_5066_tx_12 1 - 464287 466224 . 2 1028,687 0,1251 -chrX 464287 466224 HC_gene_5066_tx_13 1 - 464287 466224 . 2 830,992 0,946 -chrX 464287 466224 HC_gene_5066_tx_14 1 - 464287 466224 . 2 1240,422 0,1516 -chrX 466285 467054 HC_gene_5067_tx_1 237 - 466285 467054 . 1 770 0 -chrX 466497 467206 MC_gene_4774_tx_1 1 + 466497 467206 . 1 710 0 -chrX 467131 468311 HC_gene_5068_tx_1 16 - 467131 468311 . 1 1181 0 -chrX 467241 469038 MC_gene_4775_tx_1 1 + 467241 469038 . 1 1798 0 -chrX 467256 468557 MC_gene_4775_tx_2 1 + 467256 468557 . 1 1302 0 -chrX 468461 468987 HC_gene_5069_tx_1 1 - 468461 468987 . 1 527 0 -chrX 468461 469606 HC_gene_5069_tx_2 18 - 468461 469606 . 1 1146 0 -chrX 468547 469361 MC_gene_4776_tx_1 1 + 468547 469361 . 1 815 0 -chrX 469755 470249 HC_gene_4777_tx_1 33 + 469755 470249 . 1 495 0 -chrX 469755 470249 HC_gene_4777_tx_2 1 + 469755 470249 . 2 337,119 0,376 -chrX 470099 470553 HC_gene_5070_tx_1 26 - 470099 470553 . 1 455 0 -chrX 470099 470655 HC_gene_5070_tx_2 19 - 470099 470655 . 1 557 0 -chrX 470099 470769 HC_gene_5070_tx_3 26 - 470099 470769 . 1 671 0 -chrX 470099 470976 HC_gene_5070_tx_4 164 - 470099 470976 . 1 878 0 -chrX 470099 471679 HC_gene_5070_tx_5 4 - 470099 471679 . 1 1581 0 -chrX 470921 471679 HC_gene_5070_tx_6 55 - 470921 471679 . 1 759 0 -chrX 471055 471469 HC_gene_5070_tx_8 37 - 471055 471469 . 1 415 0 -chrX 471055 471679 HC_gene_5070_tx_7 408 - 471055 471679 . 1 625 0 -chrX 472026 472441 HC_gene_5071_tx_1 2 - 472026 472441 . 1 416 0 -chrX 472026 472527 HC_gene_5071_tx_2 1 - 472026 472527 . 1 502 0 -chrX 472154 472805 MC_gene_4778_tx_1 1 + 472154 472805 . 1 652 0 -chrX 475495 478373 MC_gene_4779_tx_1 1 + 475495 478373 . 1 2879 0 -chrX 476641 478358 MC_gene_4779_tx_2 1 + 476641 478358 . 1 1718 0 -chrX 477666 478948 MC_gene_4780_tx_1 1 + 477666 478948 . 1 1283 0 -chrX 481682 485602 MC_gene_4781_tx_1 1 + 481682 485602 . 1 3921 0 -chrX 483758 486255 MC_gene_5072_tx_1 1 - 483758 486255 . 1 2498 0 -chrX 485271 490889 MC_gene_5073_tx_1 1 - 485271 490889 . 1 5619 0 -chrX 486377 488473 MC_gene_5073_tx_2 1 - 486377 488473 . 1 2097 0 -chrX 486453 489982 MC_gene_5073_tx_4 1 - 486453 489982 . 1 3530 0 -chrX 486542 488384 MC_gene_5073_tx_3 1 - 486542 488384 . 1 1843 0 -chrX 486618 489050 MC_gene_5073_tx_5 1 - 486618 489050 . 1 2433 0 -chrX 489640 490534 MC_gene_5073_tx_6 1 - 489640 490534 . 1 895 0 -chrX 491054 492409 HC_gene_4782_tx_1 35 + 491054 492409 . 1 1356 0 -chrX 491685 492409 HC_gene_4782_tx_2 6 + 491685 492409 . 1 725 0 -chrX 492292 496475 HC_gene_5074_tx_1 3 - 492292 496475 . 1 4184 0 -chrX 496641 497084 HC_gene_4783_tx_1 38 + 496641 497084 . 1 444 0 -chrX 496641 497196 HC_gene_4783_tx_2 35 + 496641 497196 . 1 556 0 -chrX 497010 497236 HC_gene_5075_tx_1 4 - 497010 497236 . 1 227 0 -chrX 497343 500762 HC_gene_4784_tx_1 1 + 497343 500762 . 2 360,2663 0,757 -chrX 497343 500762 HC_gene_4784_tx_2 1 + 497343 500762 . 1 3420 0 -chrX 499828 500762 HC_gene_4784_tx_3 2 + 499828 500762 . 1 935 0 -chrX 500150 500762 HC_gene_4784_tx_4 3 + 500150 500762 . 1 613 0 -chrX 500623 503405 MC_gene_5076_tx_1 1 - 500623 503405 . 1 2783 0 -chrX 501079 501617 MC_gene_5076_tx_2 1 - 501079 501617 . 1 539 0 -chrX 501235 503553 MC_gene_5076_tx_3 1 - 501235 503553 . 1 2319 0 -chrX 501553 502538 MC_gene_5076_tx_4 1 - 501553 502538 . 1 986 0 -chrX 503944 505910 HC_gene_4785_tx_1 1 + 503944 505910 . 1 1967 0 -chrX 503944 507348 HC_gene_4785_tx_2 1 + 503944 507348 . 1 3405 0 -chrX 507274 507528 HC_gene_5077_tx_1 1 - 507274 507528 . 1 255 0 -chrX 507706 509063 HC_gene_4786_tx_1 1 + 507706 509063 . 1 1358 0 -chrX 507706 510152 HC_gene_4786_tx_2 11 + 507706 510152 . 1 2447 0 -chrX 507706 510152 HC_gene_4786_tx_3 1 + 507706 510152 . 2 1211,1162 0,1285 -chrX 507706 510152 HC_gene_4786_tx_4 1 + 507706 510152 . 2 1595,801 0,1646 -chrX 510045 513830 HC_gene_5078_tx_1 9 - 510045 513830 . 1 3786 0 -chrX 510045 513830 HC_gene_5078_tx_2 1 - 510045 513830 . 2 3063,626 0,3160 -chrX 510367 513830 HC_gene_5078_tx_3 1 - 510367 513830 . 1 3464 0 -chrX 510369 513830 HC_gene_5078_tx_4 1 - 510369 513830 . 1 3462 0 -chrX 513413 513902 LC_gene_4787_tx_1 1 + 513413 513902 . 1 490 0 -chrX 514031 516387 HC_gene_4788_tx_1 33 + 514031 516387 . 1 2357 0 -chrX 514031 516387 HC_gene_4788_tx_2 1 + 514031 516387 . 2 1173,1028 0,1329 -chrX 514031 516387 HC_gene_4788_tx_3 1 + 514031 516387 . 2 1778,271 0,2086 -chrX 514190 516387 HC_gene_4788_tx_4 4 + 514190 516387 . 1 2198 0 -chrX 514190 516387 HC_gene_4788_tx_5 1 + 514190 516387 . 2 1435,587 0,1611 -chrX 514270 516387 HC_gene_4788_tx_6 3 + 514270 516387 . 1 2118 0 -chrX 514270 516387 HC_gene_4788_tx_7 1 + 514270 516387 . 2 215,1289 0,829 -chrX 516329 517136 HC_gene_5079_tx_1 4 - 516329 517136 . 1 808 0 -chrX 516329 517548 HC_gene_5079_tx_2 31 - 516329 517548 . 1 1220 0 -chrX 516329 517670 HC_gene_5079_tx_3 3 - 516329 517670 . 1 1342 0 -chrX 516329 517670 HC_gene_5079_tx_4 1 - 516329 517670 . 2 1204,56 0,1286 -chrX 516576 516921 MC_gene_4789_tx_1 1 + 516576 516921 . 1 346 0 -chrX 517757 517878 MC_gene_5080_tx_1 1 - 517757 517878 . 1 122 0 -chrX 518475 519268 HC_gene_5081_tx_1 5 - 518475 519268 . 1 794 0 -chrX 518587 519268 HC_gene_5081_tx_2 227 - 518587 519268 . 1 682 0 -chrX 518654 519568 HC_gene_4790_tx_1 2 + 518654 519568 . 1 915 0 -chrX 519418 519769 HC_gene_5082_tx_1 188 - 519418 519769 . 1 352 0 -chrX 519418 520131 HC_gene_5082_tx_2 112 - 519418 520131 . 1 714 0 -chrX 519418 520930 HC_gene_5082_tx_3 38 - 519418 520930 . 1 1513 0 -chrX 519418 520930 HC_gene_5082_tx_4 1 - 519418 520930 . 2 633,724 0,789 -chrX 519418 520930 HC_gene_5082_tx_5 1 - 519418 520930 . 2 125,1289 0,224 -chrX 519418 521199 HC_gene_5082_tx_6 38 - 519418 521199 . 1 1782 0 -chrX 519418 521199 HC_gene_5082_tx_7 1 - 519418 521199 . 2 158,1573 0,209 -chrX 519418 521382 HC_gene_5082_tx_8 45 - 519418 521382 . 1 1965 0 -chrX 519418 521382 HC_gene_5082_tx_9 1 - 519418 521382 . 2 853,989 0,976 -chrX 519418 521382 HC_gene_5082_tx_10 1 - 519418 521382 . 2 890,975 0,990 -chrX 519418 521520 HC_gene_5082_tx_11 14 - 519418 521520 . 1 2103 0 -chrX 519418 521520 HC_gene_5082_tx_12 1 - 519418 521520 . 2 890,1113 0,990 -chrX 519418 521520 HC_gene_5082_tx_13 1 - 519418 521520 . 2 932,1125 0,978 -chrX 519418 521520 HC_gene_5082_tx_14 1 - 519418 521520 . 2 1767,129 0,1974 -chrX 519418 521742 HC_gene_5082_tx_15 316 - 519418 521742 . 1 2325 0 -chrX 519418 521742 HC_gene_5082_tx_16 1 - 519418 521742 . 2 1602,610 0,1715 -chrX 519418 521742 HC_gene_5082_tx_17 1 - 519418 521742 . 2 1322,192 0,2133 -chrX 519418 521742 HC_gene_5082_tx_18 1 - 519418 521742 . 2 407,1824 0,501 -chrX 519418 521742 HC_gene_5082_tx_19 1 - 519418 521742 . 2 2069,150 0,2175 -chrX 519418 521742 HC_gene_5082_tx_20 1 - 519418 521742 . 2 480,1536 0,789 -chrX 519418 521742 HC_gene_5082_tx_21 1 - 519418 521742 . 2 407,1683 0,642 -chrX 519418 521742 HC_gene_5082_tx_22 1 - 519418 521742 . 2 918,1359 0,966 -chrX 519418 521742 HC_gene_5082_tx_23 1 - 519418 521742 . 2 903,1337 0,988 -chrX 519418 521742 HC_gene_5082_tx_24 1 - 519418 521742 . 2 901,1337 0,988 -chrX 519418 521742 HC_gene_5082_tx_25 1 - 519418 521742 . 2 1065,1191 0,1134 -chrX 519418 521742 HC_gene_5082_tx_26 1 - 519418 521742 . 2 1679,603 0,1722 -chrX 519545 521742 HC_gene_5082_tx_27 1 - 519545 521742 . 1 2198 0 -chrX 519546 521742 HC_gene_5082_tx_28 1 - 519546 521742 . 1 2197 0 -chrX 522020 523943 HC_gene_4791_tx_1 24 + 522020 523943 . 1 1924 0 -chrX 522797 523943 HC_gene_4791_tx_2 2 + 522797 523943 . 1 1147 0 -chrX 523925 524509 HC_gene_5083_tx_1 1 - 523925 524509 . 1 585 0 -chrX 524198 524509 HC_gene_5083_tx_2 15 - 524198 524509 . 1 312 0 -chrX 524316 524638 LC_gene_4792_tx_1 1 + 524316 524638 . 1 323 0 -chrX 524662 524887 LC_gene_4793_tx_1 1 + 524662 524887 . 1 226 0 -chrX 524862 525235 HC_gene_5084_tx_1 24 - 524862 525235 . 1 374 0 -chrX 524862 525411 HC_gene_5084_tx_2 284 - 524862 525411 . 1 550 0 -chrX 524933 526232 LC_gene_4794_tx_1 1 + 524933 526232 . 1 1300 0 -chrX 526168 526841 HC_gene_4795_tx_1 6 + 526168 526841 . 1 674 0 -chrX 526263 527283 HC_gene_5085_tx_1 2 - 526263 527283 . 1 1021 0 -chrX 526263 528023 HC_gene_5085_tx_2 1 - 526263 528023 . 2 337,1355 0,406 -chrX 526263 528023 HC_gene_5085_tx_3 1 - 526263 528023 . 1 1761 0 -chrX 526263 528495 HC_gene_5085_tx_4 5 - 526263 528495 . 1 2233 0 -chrX 526273 526841 HC_gene_4795_tx_2 213 + 526273 526841 . 1 569 0 -chrX 526698 527283 HC_gene_5085_tx_7 1 - 526698 527283 . 1 586 0 -chrX 526698 528495 HC_gene_5085_tx_5 2 - 526698 528495 . 1 1798 0 -chrX 526777 527283 HC_gene_5085_tx_8 8 - 526777 527283 . 1 507 0 -chrX 526777 528023 HC_gene_5085_tx_9 1 - 526777 528023 . 1 1247 0 -chrX 526777 528495 HC_gene_5085_tx_6 21 - 526777 528495 . 1 1719 0 -chrX 528685 529682 HC_gene_4796_tx_1 2 + 528685 529682 . 1 998 0 -chrX 528685 529683 HC_gene_4796_tx_2 2 + 528685 529683 . 1 999 0 -chrX 528685 529684 HC_gene_4796_tx_3 3 + 528685 529684 . 1 1000 0 -chrX 528685 529696 HC_gene_4796_tx_4 2 + 528685 529696 . 1 1012 0 -chrX 528685 529704 HC_gene_4796_tx_5 1 + 528685 529704 . 1 1020 0 -chrX 528817 529685 HC_gene_4796_tx_6 1 + 528817 529685 . 1 869 0 -chrX 529382 529633 MC_gene_5086_tx_1 1 - 529382 529633 . 1 252 0 -chrX 529847 531440 HC_gene_4797_tx_1 44 + 529847 531440 . 1 1594 0 -chrX 529847 531440 HC_gene_4797_tx_2 1 + 529847 531440 . 2 536,1007 0,587 -chrX 529847 531440 HC_gene_4797_tx_3 1 + 529847 531440 . 2 736,679 0,915 -chrX 529847 531714 HC_gene_4797_tx_4 4 + 529847 531714 . 1 1868 0 -chrX 530198 531440 HC_gene_4797_tx_5 14 + 530198 531440 . 1 1243 0 -chrX 530198 531440 HC_gene_4797_tx_6 1 + 530198 531440 . 2 338,812 0,431 -chrX 530198 531440 HC_gene_4797_tx_7 1 + 530198 531440 . 2 338,638 0,605 -chrX 530774 531440 HC_gene_4797_tx_8 18 + 530774 531440 . 1 667 0 -chrX 530774 531714 HC_gene_4797_tx_9 1 + 530774 531714 . 1 941 0 -chrX 532055 533820 HC_gene_4798_tx_1 26 + 532055 533820 . 1 1766 0 -chrX 532055 533820 HC_gene_4798_tx_2 1 + 532055 533820 . 2 944,708 0,1058 -chrX 532188 533820 HC_gene_4798_tx_3 2 + 532188 533820 . 1 1633 0 -chrX 533738 534756 MC_gene_5087_tx_1 1 - 533738 534756 . 1 1019 0 -chrX 533975 537579 HC_gene_4799_tx_1 1 + 533975 537579 . 1 3605 0 -chrX 533975 537648 HC_gene_4799_tx_2 1 + 533975 537648 . 1 3674 0 -chrX 533975 537719 HC_gene_4799_tx_3 1 + 533975 537719 . 1 3745 0 -chrX 535988 537579 HC_gene_4799_tx_4 4 + 535988 537579 . 1 1592 0 -chrX 535988 537648 HC_gene_4799_tx_5 14 + 535988 537648 . 1 1661 0 -chrX 535988 537648 HC_gene_4799_tx_6 1 + 535988 537648 . 2 1097,437 0,1224 -chrX 535988 537648 HC_gene_4799_tx_7 1 + 535988 537648 . 2 1051,485 0,1176 -chrX 535988 537719 HC_gene_4799_tx_8 8 + 535988 537719 . 1 1732 0 -chrX 537244 537579 HC_gene_4799_tx_9 5 + 537244 537579 . 1 336 0 -chrX 537244 537648 HC_gene_4799_tx_10 12 + 537244 537648 . 1 405 0 -chrX 537244 537719 HC_gene_4799_tx_11 4 + 537244 537719 . 1 476 0 -chrX 538761 539567 HC_gene_4800_tx_1 4 + 538761 539567 . 1 807 0 -chrX 538761 539683 HC_gene_4800_tx_2 23 + 538761 539683 . 1 923 0 -chrX 539511 540493 HC_gene_5088_tx_1 14 - 539511 540493 . 1 983 0 -chrX 539975 540575 MC_gene_4801_tx_1 1 + 539975 540575 . 1 601 0 -chrX 540541 540923 MC_gene_5089_tx_1 1 - 540541 540923 . 1 383 0 -chrX 541583 542571 LC_gene_4802_tx_1 1 + 541583 542571 . 1 989 0 -chrX 541651 542648 HC_gene_5090_tx_1 43 - 541651 542648 . 1 998 0 -chrX 543166 543469 MC_gene_5091_tx_1 1 - 543166 543469 . 1 304 0 -chrX 543374 543865 MC_gene_5092_tx_1 1 - 543374 543865 . 2 230,164 0,328 -chrX 544038 544784 HC_gene_4803_tx_1 92 + 544038 544784 . 1 747 0 -chrX 544292 544784 HC_gene_4803_tx_2 12 + 544292 544784 . 1 493 0 -chrX 544540 544784 HC_gene_4803_tx_3 2 + 544540 544784 . 1 245 0 -chrX 544684 545214 HC_gene_5093_tx_1 193 - 544684 545214 . 1 531 0 -chrX 544684 545433 HC_gene_5093_tx_2 8 - 544684 545433 . 1 750 0 -chrX 545714 548455 MC_gene_4804_tx_1 1 + 545714 548455 . 1 2742 0 -chrX 545885 548415 MC_gene_4804_tx_2 1 + 545885 548415 . 1 2531 0 -chrX 546011 548388 MC_gene_4804_tx_3 1 + 546011 548388 . 2 1170,1090 0,1288 -chrX 546077 548454 MC_gene_4804_tx_4 1 + 546077 548454 . 1 2378 0 -chrX 546204 548454 MC_gene_4804_tx_5 1 + 546204 548454 . 1 2251 0 -chrX 546799 548462 MC_gene_4804_tx_6 1 + 546799 548462 . 1 1664 0 -chrX 546950 547320 MC_gene_5094_tx_1 1 - 546950 547320 . 1 371 0 -chrX 547373 547892 MC_gene_5095_tx_1 1 - 547373 547892 . 1 520 0 -chrX 547750 548454 MC_gene_4804_tx_7 1 + 547750 548454 . 1 705 0 -chrX 547845 548454 MC_gene_4804_tx_8 1 + 547845 548454 . 1 610 0 -chrX 548374 549185 MC_gene_5096_tx_1 1 - 548374 549185 . 1 812 0 -chrX 548709 550427 HC_gene_4805_tx_1 4 + 548709 550427 . 1 1719 0 -chrX 549409 550427 HC_gene_4805_tx_2 2 + 549409 550427 . 1 1019 0 -chrX 550374 553468 HC_gene_4806_tx_1 1 + 550374 553468 . 1 3095 0 -chrX 551452 551676 LC_gene_5097_tx_1 1 - 551452 551676 . 1 225 0 -chrX 552820 554852 HC_gene_5098_tx_1 1 - 552820 554852 . 2 834,1164 0,869 -chrX 552820 554852 HC_gene_5098_tx_2 1 - 552820 554852 . 1 2033 0 -chrX 552964 554852 HC_gene_5098_tx_3 5 - 552964 554852 . 1 1889 0 -chrX 553136 554852 HC_gene_5098_tx_4 2 - 553136 554852 . 1 1717 0 -chrX 553395 554852 HC_gene_5098_tx_5 1 - 553395 554852 . 1 1458 0 -chrX 553402 554852 HC_gene_5098_tx_6 1 - 553402 554852 . 1 1451 0 -chrX 555177 555689 HC_gene_4807_tx_1 266 + 555177 555689 . 1 513 0 -chrX 555877 557664 HC_gene_4808_tx_1 140 + 555877 557664 . 1 1788 0 -chrX 555877 557664 HC_gene_4808_tx_2 1 + 555877 557664 . 2 973,712 0,1076 -chrX 555877 557664 HC_gene_4808_tx_3 1 + 555877 557664 . 2 1182,540 0,1248 -chrX 555877 557755 HC_gene_4808_tx_4 6 + 555877 557755 . 1 1879 0 -chrX 556148 557664 HC_gene_4808_tx_5 21 + 556148 557664 . 1 1517 0 -chrX 556445 557664 HC_gene_4808_tx_6 19 + 556445 557664 . 1 1220 0 -chrX 556599 557664 HC_gene_4808_tx_7 19 + 556599 557664 . 1 1066 0 -chrX 556599 557664 HC_gene_4808_tx_8 1 + 556599 557664 . 2 522,472 0,594 -chrX 556599 557755 HC_gene_4808_tx_9 1 + 556599 557755 . 1 1157 0 -chrX 556712 557664 HC_gene_4808_tx_10 22 + 556712 557664 . 1 953 0 -chrX 556947 557664 HC_gene_4808_tx_11 20 + 556947 557664 . 1 718 0 -chrX 556947 557755 HC_gene_4808_tx_12 1 + 556947 557755 . 1 809 0 -chrX 557064 557664 HC_gene_4808_tx_13 36 + 557064 557664 . 1 601 0 -chrX 557064 557755 HC_gene_4808_tx_14 2 + 557064 557755 . 1 692 0 -chrX 557508 558085 HC_gene_5099_tx_1 3 - 557508 558085 . 1 578 0 -chrX 557508 558927 HC_gene_5099_tx_4 1 - 557508 558927 . 1 1420 0 -chrX 557508 559179 HC_gene_5099_tx_5 4 - 557508 559179 . 1 1672 0 -chrX 557580 558085 HC_gene_5099_tx_2 1 - 557580 558085 . 1 506 0 -chrX 557580 558502 HC_gene_5099_tx_15 1 - 557580 558502 . 1 923 0 -chrX 557580 558858 HC_gene_5099_tx_6 3 - 557580 558858 . 1 1279 0 -chrX 557580 559179 HC_gene_5099_tx_7 8 - 557580 559179 . 1 1600 0 -chrX 557632 557922 HC_gene_5099_tx_17 14 - 557632 557922 . 1 291 0 -chrX 557632 558085 HC_gene_5099_tx_3 42 - 557632 558085 . 1 454 0 -chrX 557632 558502 HC_gene_5099_tx_16 24 - 557632 558502 . 1 871 0 -chrX 557632 558858 HC_gene_5099_tx_8 20 - 557632 558858 . 1 1227 0 -chrX 557632 558858 HC_gene_5099_tx_9 1 - 557632 558858 . 2 738,351 0,876 -chrX 557632 558927 HC_gene_5099_tx_10 9 - 557632 558927 . 1 1296 0 -chrX 557632 559179 HC_gene_5099_tx_11 175 - 557632 559179 . 1 1548 0 -chrX 557632 559179 HC_gene_5099_tx_12 1 - 557632 559179 . 2 517,915 0,633 -chrX 557632 559179 HC_gene_5099_tx_13 1 - 557632 559179 . 2 388,891 0,657 -chrX 557632 559179 HC_gene_5099_tx_14 1 - 557632 559179 . 2 1456,44 0,1504 -chrX 559395 561658 MC_gene_4809_tx_1 1 + 559395 561658 . 1 2264 0 -chrX 562985 565442 MC_gene_4810_tx_1 1 + 562985 565442 . 1 2458 0 -chrX 563883 564063 MC_gene_4810_tx_2 1 + 563883 564063 . 1 181 0 -chrX 564574 565211 MC_gene_5100_tx_1 1 - 564574 565211 . 1 638 0 -chrX 565413 566944 HC_gene_4811_tx_1 10 + 565413 566944 . 1 1532 0 -chrX 566077 567467 HC_gene_5101_tx_1 1 - 566077 567467 . 1 1391 0 -chrX 566653 567467 HC_gene_5101_tx_2 1 - 566653 567467 . 1 815 0 -chrX 566894 567467 HC_gene_5101_tx_3 107 - 566894 567467 . 1 574 0 -chrX 566894 567467 HC_gene_5101_tx_4 1 - 566894 567467 . 2 65,464 0,110 -chrX 567602 568788 HC_gene_4812_tx_1 70 + 567602 568788 . 1 1187 0 -chrX 567602 568788 HC_gene_4812_tx_2 1 + 567602 568788 . 2 1023,79 0,1108 -chrX 567602 569558 HC_gene_4812_tx_4 1 + 567602 569558 . 1 1957 0 -chrX 567724 568788 HC_gene_4812_tx_3 3 + 567724 568788 . 1 1065 0 -chrX 568664 569278 HC_gene_5102_tx_1 11 - 568664 569278 . 1 615 0 -chrX 568664 569437 HC_gene_5102_tx_2 120 - 568664 569437 . 1 774 0 -chrX 569488 570196 HC_gene_5103_tx_1 16 - 569488 570196 . 1 709 0 -chrX 569488 570250 HC_gene_5103_tx_2 22 - 569488 570250 . 1 763 0 -chrX 569488 570641 HC_gene_5103_tx_3 276 - 569488 570641 . 1 1154 0 -chrX 569488 570641 HC_gene_5103_tx_4 1 - 569488 570641 . 2 551,550 0,604 -chrX 569488 570641 HC_gene_5103_tx_5 1 - 569488 570641 . 2 576,537 0,617 -chrX 569488 570641 HC_gene_5103_tx_6 1 - 569488 570641 . 2 696,320 0,834 -chrX 569488 570641 HC_gene_5103_tx_7 1 - 569488 570641 . 2 388,504 0,650 -chrX 569488 570641 HC_gene_5103_tx_8 1 - 569488 570641 . 2 694,320 0,834 -chrX 570667 571418 HC_gene_5104_tx_1 9 - 570667 571418 . 1 752 0 -chrX 570667 572156 HC_gene_5104_tx_2 12 - 570667 572156 . 1 1490 0 -chrX 570894 571250 HC_gene_5104_tx_5 9 - 570894 571250 . 1 357 0 -chrX 570894 571418 HC_gene_5104_tx_6 28 - 570894 571418 . 1 525 0 -chrX 570894 572059 HC_gene_5104_tx_3 3 - 570894 572059 . 1 1166 0 -chrX 570894 572156 HC_gene_5104_tx_4 72 - 570894 572156 . 1 1263 0 -chrX 571057 572321 LC_gene_4813_tx_1 1 + 571057 572321 . 1 1265 0 -chrX 572197 572613 HC_gene_5105_tx_1 10 - 572197 572613 . 1 417 0 -chrX 572197 572754 HC_gene_5105_tx_2 16 - 572197 572754 . 1 558 0 -chrX 572197 572966 HC_gene_5105_tx_3 129 - 572197 572966 . 1 770 0 -chrX 572325 572605 LC_gene_4814_tx_1 1 + 572325 572605 . 1 281 0 -chrX 573176 573886 HC_gene_4815_tx_1 36 + 573176 573886 . 1 711 0 -chrX 573278 573741 LC_gene_5106_tx_1 1 - 573278 573741 . 1 464 0 -chrX 573325 573886 HC_gene_4815_tx_2 11 + 573325 573886 . 1 562 0 -chrX 573379 573886 HC_gene_4815_tx_3 6 + 573379 573886 . 1 508 0 -chrX 573920 575210 HC_gene_4816_tx_1 41 + 573920 575210 . 1 1291 0 -chrX 573920 575210 HC_gene_4816_tx_2 1 + 573920 575210 . 2 816,408 0,883 -chrX 573920 575446 HC_gene_4816_tx_3 68 + 573920 575446 . 1 1527 0 -chrX 573920 575446 HC_gene_4816_tx_4 1 + 573920 575446 . 2 973,502 0,1025 -chrX 573920 575446 HC_gene_4816_tx_5 1 + 573920 575446 . 2 812,672 0,855 -chrX 574213 574843 LC_gene_5107_tx_1 1 - 574213 574843 . 1 631 0 -chrX 574314 575210 HC_gene_4816_tx_6 4 + 574314 575210 . 1 897 0 -chrX 574314 575446 HC_gene_4816_tx_8 11 + 574314 575446 . 1 1133 0 -chrX 574459 575210 HC_gene_4816_tx_7 5 + 574459 575210 . 1 752 0 -chrX 574459 575446 HC_gene_4816_tx_9 13 + 574459 575446 . 1 988 0 -chrX 574615 575210 HC_gene_4816_tx_11 5 + 574615 575210 . 1 596 0 -chrX 574615 575446 HC_gene_4816_tx_10 8 + 574615 575446 . 1 832 0 -chrX 575265 575555 HC_gene_5108_tx_1 18 - 575265 575555 . 1 291 0 -chrX 575265 575719 HC_gene_5108_tx_2 14 - 575265 575719 . 1 455 0 -chrX 575265 575887 HC_gene_5108_tx_3 9 - 575265 575887 . 1 623 0 -chrX 575265 576327 HC_gene_5108_tx_4 6 - 575265 576327 . 1 1063 0 -chrX 575265 576391 HC_gene_5108_tx_5 3 - 575265 576391 . 1 1127 0 -chrX 575265 576391 HC_gene_5108_tx_6 1 - 575265 576391 . 2 767,266 0,861 -chrX 575265 576516 HC_gene_5108_tx_7 1 - 575265 576516 . 2 271,658 0,594 -chrX 575265 576516 HC_gene_5108_tx_8 3 - 575265 576516 . 1 1252 0 -chrX 575265 576638 HC_gene_5108_tx_9 2 - 575265 576638 . 2 487,821 0,553 -chrX 575265 576638 HC_gene_5108_tx_10 60 - 575265 576638 . 1 1374 0 -chrX 575265 576638 HC_gene_5108_tx_11 1 - 575265 576638 . 2 508,821 0,553 -chrX 575265 576638 HC_gene_5108_tx_12 1 - 575265 576638 . 2 577,727 0,647 -chrX 575265 576926 HC_gene_5108_tx_13 3 - 575265 576926 . 1 1662 0 -chrX 576881 577088 HC_gene_4817_tx_1 14 + 576881 577088 . 1 208 0 -chrX 577100 578824 MC_gene_4818_tx_1 1 + 577100 578824 . 1 1725 0 -chrX 577107 577725 HC_gene_5109_tx_1 50 - 577107 577725 . 1 619 0 -chrX 577107 577967 HC_gene_5109_tx_2 59 - 577107 577967 . 1 861 0 -chrX 577107 578106 HC_gene_5109_tx_3 52 - 577107 578106 . 1 1000 0 -chrX 577107 578238 HC_gene_5109_tx_4 461 - 577107 578238 . 1 1132 0 -chrX 579521 580440 HC_gene_4819_tx_1 8 + 579521 580440 . 1 920 0 -chrX 579818 580440 HC_gene_4819_tx_2 6 + 579818 580440 . 1 623 0 -chrX 580287 580667 HC_gene_5110_tx_1 11 - 580287 580667 . 1 381 0 -chrX 580287 580995 HC_gene_5110_tx_2 11 - 580287 580995 . 1 709 0 -chrX 580287 581646 HC_gene_5110_tx_3 47 - 580287 581646 . 1 1360 0 -chrX 580287 581646 HC_gene_5110_tx_4 1 - 580287 581646 . 2 1067,214 0,1146 -chrX 581361 581830 MC_gene_4820_tx_1 1 + 581361 581830 . 1 470 0 -chrX 581713 582041 HC_gene_5111_tx_1 24 - 581713 582041 . 1 329 0 -chrX 581713 582396 HC_gene_5111_tx_2 89 - 581713 582396 . 1 684 0 -chrX 581713 583399 HC_gene_5111_tx_4 1 - 581713 583399 . 1 1687 0 -chrX 581713 583561 HC_gene_5111_tx_5 1 - 581713 583561 . 1 1849 0 -chrX 581786 582041 HC_gene_5111_tx_6 3 - 581786 582041 . 1 256 0 -chrX 581786 582396 HC_gene_5111_tx_3 9 - 581786 582396 . 1 611 0 -chrX 581921 582396 HC_gene_5111_tx_7 1 - 581921 582396 . 1 476 0 -chrX 582292 583561 HC_gene_5111_tx_8 1 - 582292 583561 . 1 1270 0 -chrX 582488 583561 HC_gene_5111_tx_9 1 - 582488 583561 . 1 1074 0 -chrX 582489 583561 HC_gene_5111_tx_10 1 - 582489 583561 . 1 1073 0 -chrX 582502 583561 HC_gene_5111_tx_11 1 - 582502 583561 . 1 1060 0 -chrX 582510 583561 HC_gene_5111_tx_12 1 - 582510 583561 . 1 1052 0 -chrX 582512 583399 HC_gene_5111_tx_13 1 - 582512 583399 . 1 888 0 -chrX 582513 583561 HC_gene_5111_tx_14 2 - 582513 583561 . 1 1049 0 -chrX 582517 583561 HC_gene_5111_tx_15 1 - 582517 583561 . 1 1045 0 -chrX 582518 583561 HC_gene_5111_tx_16 2 - 582518 583561 . 1 1044 0 -chrX 582519 583561 HC_gene_5111_tx_17 1 - 582519 583561 . 1 1043 0 -chrX 582521 583561 HC_gene_5111_tx_18 3 - 582521 583561 . 1 1041 0 -chrX 582523 583561 HC_gene_5111_tx_19 2 - 582523 583561 . 1 1039 0 -chrX 582528 583561 HC_gene_5111_tx_20 1 - 582528 583561 . 1 1034 0 -chrX 582582 582960 MC_gene_4821_tx_1 1 + 582582 582960 . 1 379 0 -chrX 583693 585114 HC_gene_4822_tx_1 40 + 583693 585114 . 1 1422 0 -chrX 583693 585114 HC_gene_4822_tx_2 1 + 583693 585114 . 2 258,1009 0,413 -chrX 583693 585114 HC_gene_4822_tx_3 1 + 583693 585114 . 2 269,832 0,590 -chrX 583693 585912 HC_gene_4822_tx_4 1 + 583693 585912 . 1 2220 0 -chrX 584186 584890 MC_gene_5112_tx_1 1 - 584186 584890 . 1 705 0 -chrX 585023 585477 HC_gene_5113_tx_1 391 - 585023 585477 . 1 455 0 -chrX 586038 586447 HC_gene_4823_tx_1 1 + 586038 586447 . 1 410 0 -chrX 586038 586449 HC_gene_4823_tx_2 2 + 586038 586449 . 1 412 0 -chrX 586038 586452 HC_gene_4823_tx_3 2 + 586038 586452 . 1 415 0 -chrX 586038 586453 HC_gene_4823_tx_4 1 + 586038 586453 . 1 416 0 -chrX 586038 586454 HC_gene_4823_tx_5 3 + 586038 586454 . 1 417 0 -chrX 586038 586455 HC_gene_4823_tx_6 1 + 586038 586455 . 1 418 0 -chrX 586038 586456 HC_gene_4823_tx_7 1 + 586038 586456 . 1 419 0 -chrX 586038 587024 HC_gene_4823_tx_8 7 + 586038 587024 . 1 987 0 -chrX 586038 587435 HC_gene_4823_tx_10 25 + 586038 587435 . 1 1398 0 -chrX 586038 587435 HC_gene_4823_tx_11 1 + 586038 587435 . 2 96,1168 0,230 -chrX 586205 586453 HC_gene_4823_tx_14 1 + 586205 586453 . 1 249 0 -chrX 586205 587024 HC_gene_4823_tx_9 3 + 586205 587024 . 1 820 0 -chrX 586205 587435 HC_gene_4823_tx_12 1 + 586205 587435 . 1 1231 0 -chrX 586205 587435 HC_gene_4823_tx_13 1 + 586205 587435 . 2 80,828 0,403 -chrX 586226 586676 HC_gene_5114_tx_1 22 - 586226 586676 . 1 451 0 -chrX 586226 586990 HC_gene_5114_tx_2 10 - 586226 586990 . 1 765 0 -chrX 586226 587406 HC_gene_5114_tx_3 99 - 586226 587406 . 1 1181 0 -chrX 587407 587598 MC_gene_5115_tx_1 1 - 587407 587598 . 1 192 0 -chrX 587627 590652 HC_gene_4824_tx_1 5 + 587627 590652 . 1 3026 0 -chrX 587627 590652 HC_gene_4824_tx_2 1 + 587627 590652 . 2 910,1774 0,1252 -chrX 590770 592201 HC_gene_5116_tx_1 2 - 590770 592201 . 1 1432 0 -chrX 590770 593689 HC_gene_5116_tx_2 1 - 590770 593689 . 1 2920 0 -chrX 590770 594604 HC_gene_5116_tx_3 1 - 590770 594604 . 1 3835 0 -chrX 590770 594604 HC_gene_5116_tx_4 1 - 590770 594604 . 2 1023,2703 0,1132 -chrX 592471 593689 HC_gene_5116_tx_5 1 - 592471 593689 . 1 1219 0 -chrX 593308 593689 HC_gene_5116_tx_6 1 - 593308 593689 . 1 382 0 -chrX 593308 594355 HC_gene_5116_tx_7 1 - 593308 594355 . 1 1048 0 -chrX 593308 594604 HC_gene_5116_tx_8 4 - 593308 594604 . 1 1297 0 -chrX 594781 595324 HC_gene_5117_tx_1 14 - 594781 595324 . 1 544 0 -chrX 594781 595609 HC_gene_5117_tx_2 9 - 594781 595609 . 1 829 0 -chrX 594781 597000 HC_gene_5117_tx_3 3 - 594781 597000 . 1 2220 0 -chrX 594781 597975 HC_gene_5117_tx_4 1 - 594781 597975 . 1 3195 0 -chrX 594781 598363 HC_gene_5117_tx_5 3 - 594781 598363 . 1 3583 0 -chrX 594781 598363 HC_gene_5117_tx_6 1 - 594781 598363 . 2 1896,553 0,3030 -chrX 594781 598363 HC_gene_5117_tx_7 1 - 594781 598363 . 2 2816,139 0,3444 -chrX 594880 596172 MC_gene_4825_tx_1 1 + 594880 596172 . 1 1293 0 -chrX 598643 599639 LC_gene_5118_tx_1 1 - 598643 599639 . 1 997 0 -chrX 598684 603197 HC_gene_4826_tx_1 2 + 598684 603197 . 1 4514 0 -chrX 602240 604262 HC_gene_5119_tx_1 1 - 602240 604262 . 1 2023 0 -chrX 603108 604128 HC_gene_5119_tx_2 1 - 603108 604128 . 1 1021 0 -chrX 603108 604262 HC_gene_5119_tx_3 31 - 603108 604262 . 1 1155 0 -chrX 603108 604262 HC_gene_5119_tx_4 1 - 603108 604262 . 2 743,55 0,1100 -chrX 604256 604525 MC_gene_4827_tx_1 1 + 604256 604525 . 1 270 0 -chrX 604405 605471 HC_gene_5120_tx_1 3 - 604405 605471 . 1 1067 0 -chrX 604405 605640 HC_gene_5120_tx_2 9 - 604405 605640 . 1 1236 0 -chrX 604405 605798 HC_gene_5120_tx_3 4 - 604405 605798 . 1 1394 0 -chrX 605468 606611 MC_gene_4828_tx_1 1 + 605468 606611 . 1 1144 0 -chrX 605594 605856 MC_gene_4828_tx_2 1 + 605594 605856 . 1 263 0 -chrX 605934 607192 MC_gene_5121_tx_1 1 - 605934 607192 . 1 1259 0 -chrX 606164 607211 MC_gene_5121_tx_2 1 - 606164 607211 . 1 1048 0 -chrX 606460 607255 MC_gene_5122_tx_1 1 - 606460 607255 . 1 796 0 -chrX 606890 607169 HC_gene_4829_tx_1 1 + 606890 607169 . 1 280 0 -chrX 607392 607737 MC_gene_5123_tx_1 1 - 607392 607737 . 1 346 0 -chrX 608284 608993 HC_gene_4830_tx_1 14 + 608284 608993 . 2 23,412 0,298 -chrX 608284 608993 HC_gene_4830_tx_2 2 + 608284 608993 . 2 23,405 0,305 -chrX 608284 608993 HC_gene_4830_tx_3 1 + 608284 608993 . 2 23,396 0,314 -chrX 608284 608993 HC_gene_4830_tx_4 67 + 608284 608993 . 1 710 0 -chrX 610501 610848 MC_gene_5124_tx_1 1 - 610501 610848 . 1 348 0 -chrX 610538 611143 MC_gene_4831_tx_1 1 + 610538 611143 . 1 606 0 -chrX 610874 610986 MC_gene_5125_tx_1 1 - 610874 610986 . 1 113 0 -chrX 611164 612132 HC_gene_4832_tx_1 47 + 611164 612132 . 1 969 0 -chrX 611303 612132 HC_gene_4832_tx_2 2 + 611303 612132 . 1 830 0 -chrX 611521 612132 HC_gene_4832_tx_3 4 + 611521 612132 . 1 612 0 -chrX 611626 612132 HC_gene_4832_tx_4 8 + 611626 612132 . 1 507 0 -chrX 611891 612132 HC_gene_4832_tx_5 6 + 611891 612132 . 1 242 0 -chrX 612349 613120 HC_gene_4833_tx_1 39 + 612349 613120 . 1 772 0 -chrX 613014 615230 HC_gene_5126_tx_1 1 - 613014 615230 . 1 2217 0 -chrX 613224 613555 MC_gene_4834_tx_1 1 + 613224 613555 . 1 332 0 -chrX 615458 616357 HC_gene_4835_tx_1 51 + 615458 616357 . 1 900 0 -chrX 615669 616357 HC_gene_4835_tx_2 8 + 615669 616357 . 1 689 0 -chrX 616266 616729 HC_gene_5127_tx_1 12 - 616266 616729 . 1 464 0 -chrX 616266 617149 HC_gene_5127_tx_2 1 - 616266 617149 . 3 46,308,285 0,187,599 -chrX 616266 617149 HC_gene_5127_tx_3 26 - 616266 617149 . 1 884 0 -chrX 616266 617341 HC_gene_5127_tx_4 25 - 616266 617341 . 1 1076 0 -chrX 616266 617341 HC_gene_5127_tx_5 1 - 616266 617341 . 2 442,560 0,516 -chrX 616266 617638 HC_gene_5127_tx_6 1 - 616266 617638 . 1 1373 0 -chrX 617154 617742 MC_gene_4836_tx_1 1 + 617154 617742 . 1 589 0 -chrX 617507 617843 MC_gene_4837_tx_1 1 + 617507 617843 . 1 337 0 -chrX 618046 618911 LC_gene_5128_tx_1 1 - 618046 618911 . 1 866 0 -chrX 618137 619164 HC_gene_4838_tx_1 97 + 618137 619164 . 1 1028 0 -chrX 618341 619164 HC_gene_4838_tx_2 12 + 618341 619164 . 1 824 0 -chrX 618395 619164 HC_gene_4838_tx_3 6 + 618395 619164 . 1 770 0 -chrX 619035 619276 HC_gene_5129_tx_1 5 - 619035 619276 . 1 242 0 -chrX 619035 619876 HC_gene_5129_tx_2 35 - 619035 619876 . 1 842 0 -chrX 619035 619876 HC_gene_5129_tx_3 1 - 619035 619876 . 2 455,250 0,592 -chrX 619678 620266 MC_gene_4839_tx_1 1 + 619678 620266 . 1 589 0 -chrX 620146 620615 HC_gene_5130_tx_1 4 - 620146 620615 . 1 470 0 -chrX 620565 622547 HC_gene_4840_tx_1 5 + 620565 622547 . 1 1983 0 -chrX 620691 622547 HC_gene_4840_tx_2 45 + 620691 622547 . 1 1857 0 -chrX 620691 622547 HC_gene_4840_tx_3 1 + 620691 622547 . 2 713,767 0,1090 -chrX 620895 622547 HC_gene_4840_tx_4 8 + 620895 622547 . 1 1653 0 -chrX 620895 622631 HC_gene_4840_tx_5 1 + 620895 622631 . 1 1737 0 -chrX 622100 622547 HC_gene_4840_tx_6 19 + 622100 622547 . 1 448 0 -chrX 622100 622631 HC_gene_4840_tx_7 1 + 622100 622631 . 1 532 0 -chrX 622478 622886 HC_gene_5131_tx_1 268 - 622478 622886 . 1 409 0 -chrX 622478 623058 HC_gene_5131_tx_2 2881 - 622478 623058 . 1 581 0 -chrX 622478 623314 HC_gene_5131_tx_3 74 - 622478 623314 . 1 837 0 -chrX 623180 624648 HC_gene_4841_tx_1 8 + 623180 624648 . 1 1469 0 -chrX 623301 624648 HC_gene_4841_tx_2 1 + 623301 624648 . 1 1348 0 -chrX 623548 624648 HC_gene_4841_tx_3 448 + 623548 624648 . 1 1101 0 -chrX 623548 624648 HC_gene_4841_tx_4 1 + 623548 624648 . 2 355,630 0,471 -chrX 623548 624648 HC_gene_4841_tx_5 1 + 623548 624648 . 2 757,295 0,806 -chrX 623562 624648 HC_gene_4841_tx_6 1 + 623562 624648 . 2 395,570 0,517 -chrX 623564 624648 HC_gene_4841_tx_7 1 + 623564 624648 . 2 535,490 0,595 -chrX 623771 624648 HC_gene_4841_tx_8 1 + 623771 624648 . 2 327,430 0,448 -chrX 623827 624648 HC_gene_4841_tx_9 84 + 623827 624648 . 1 822 0 -chrX 623941 624648 HC_gene_4841_tx_10 61 + 623941 624648 . 1 708 0 -chrX 624097 624648 HC_gene_4841_tx_11 83 + 624097 624648 . 1 552 0 -chrX 624097 624648 HC_gene_4841_tx_12 1 + 624097 624648 . 2 118,324 0,228 -chrX 624584 625375 LC_gene_5132_tx_1 1 - 624584 625375 . 1 792 0 -chrX 624680 628416 HC_gene_4842_tx_1 1 + 624680 628416 . 1 3737 0 -chrX 624680 628479 HC_gene_4842_tx_2 1 + 624680 628479 . 1 3800 0 -chrX 624787 628416 HC_gene_4842_tx_3 2 + 624787 628416 . 1 3630 0 -chrX 626797 628710 HC_gene_5133_tx_1 2 - 626797 628710 . 1 1914 0 -chrX 627028 628710 HC_gene_5133_tx_2 1 - 627028 628710 . 1 1683 0 -chrX 627919 628710 HC_gene_5133_tx_3 1 - 627919 628710 . 1 792 0 -chrX 627986 628710 HC_gene_5133_tx_4 10 - 627986 628710 . 1 725 0 -chrX 628231 628522 HC_gene_5133_tx_5 5 - 628231 628522 . 1 292 0 -chrX 628231 628710 HC_gene_5133_tx_6 78 - 628231 628710 . 1 480 0 -chrX 628903 629584 HC_gene_4843_tx_1 10 + 628903 629584 . 1 682 0 -chrX 628903 629795 HC_gene_4843_tx_2 2 + 628903 629795 . 1 893 0 -chrX 629487 632395 HC_gene_5134_tx_1 5 - 629487 632395 . 1 2909 0 -chrX 629487 632829 HC_gene_5134_tx_2 4 - 629487 632829 . 1 3343 0 -chrX 629487 632999 HC_gene_5134_tx_3 77 - 629487 632999 . 1 3513 0 -chrX 629487 632999 HC_gene_5134_tx_4 1 - 629487 632999 . 2 2257,1174 0,2339 -chrX 629487 632999 HC_gene_5134_tx_5 1 - 629487 632999 . 2 985,2483 0,1030 -chrX 629487 632999 HC_gene_5134_tx_6 1 - 629487 632999 . 2 1531,1838 0,1675 -chrX 629487 632999 HC_gene_5134_tx_7 1 - 629487 632999 . 2 980,2458 0,1055 -chrX 629487 632999 HC_gene_5134_tx_8 1 - 629487 632999 . 2 761,2598 0,915 -chrX 630817 633008 LC_gene_4844_tx_1 1 + 630817 633008 . 1 2192 0 -chrX 632924 633135 HC_gene_5135_tx_1 1 - 632924 633135 . 1 212 0 -chrX 633564 635849 HC_gene_4845_tx_1 9 + 633564 635849 . 1 2286 0 -chrX 633564 635849 HC_gene_4845_tx_2 1 + 633564 635849 . 2 1634,573 0,1713 -chrX 633564 635849 HC_gene_4845_tx_3 1 + 633564 635849 . 2 665,950 0,1336 -chrX 635080 635849 HC_gene_4845_tx_4 2 + 635080 635849 . 1 770 0 -chrX 635752 636700 HC_gene_5136_tx_1 13 - 635752 636700 . 1 949 0 -chrX 635752 636831 HC_gene_5136_tx_2 51 - 635752 636831 . 1 1080 0 -chrX 637025 637673 HC_gene_4846_tx_1 2 + 637025 637673 . 1 649 0 -chrX 637025 637675 HC_gene_4846_tx_2 1 + 637025 637675 . 1 651 0 -chrX 637025 637677 HC_gene_4846_tx_3 3 + 637025 637677 . 1 653 0 -chrX 637025 637678 HC_gene_4846_tx_4 1 + 637025 637678 . 1 654 0 -chrX 637025 637680 HC_gene_4846_tx_5 2 + 637025 637680 . 1 656 0 -chrX 637025 637681 HC_gene_4846_tx_6 1 + 637025 637681 . 1 657 0 -chrX 637025 637683 HC_gene_4846_tx_7 2 + 637025 637683 . 1 659 0 -chrX 637025 637684 HC_gene_4846_tx_8 2 + 637025 637684 . 1 660 0 -chrX 637025 637685 HC_gene_4846_tx_9 6 + 637025 637685 . 1 661 0 -chrX 637025 637686 HC_gene_4846_tx_10 2 + 637025 637686 . 1 662 0 -chrX 637025 637688 HC_gene_4846_tx_11 8 + 637025 637688 . 1 664 0 -chrX 637025 637689 HC_gene_4846_tx_12 1 + 637025 637689 . 1 665 0 -chrX 637025 637690 HC_gene_4846_tx_13 2 + 637025 637690 . 1 666 0 -chrX 637025 637692 HC_gene_4846_tx_14 2 + 637025 637692 . 1 668 0 -chrX 637025 637696 HC_gene_4846_tx_15 3 + 637025 637696 . 1 672 0 -chrX 637025 637699 HC_gene_4846_tx_16 1 + 637025 637699 . 1 675 0 -chrX 637025 637703 HC_gene_4846_tx_17 3 + 637025 637703 . 1 679 0 -chrX 637025 637708 HC_gene_4846_tx_18 2 + 637025 637708 . 1 684 0 -chrX 637025 637710 HC_gene_4846_tx_19 3 + 637025 637710 . 1 686 0 -chrX 637025 637720 HC_gene_4846_tx_20 3 + 637025 637720 . 1 696 0 -chrX 637025 637721 HC_gene_4846_tx_21 1 + 637025 637721 . 1 697 0 -chrX 637025 637727 HC_gene_4846_tx_22 1 + 637025 637727 . 1 703 0 -chrX 637756 638278 HC_gene_4847_tx_1 120 + 637756 638278 . 1 523 0 -chrX 638159 638505 HC_gene_5137_tx_1 9 - 638159 638505 . 1 347 0 -chrX 638159 638679 HC_gene_5137_tx_2 9 - 638159 638679 . 1 521 0 -chrX 638159 639027 HC_gene_5137_tx_3 79 - 638159 639027 . 1 869 0 -chrX 638159 639388 HC_gene_5137_tx_4 6 - 638159 639388 . 1 1230 0 -chrX 639289 640685 HC_gene_4848_tx_1 1 + 639289 640685 . 1 1397 0 -chrX 639289 640746 HC_gene_4848_tx_2 1 + 639289 640746 . 1 1458 0 -chrX 639289 640746 HC_gene_4848_tx_3 1 + 639289 640746 . 2 710,702 0,756 -chrX 639823 640432 MC_gene_5138_tx_1 1 - 639823 640432 . 1 610 0 -chrX 639888 640746 HC_gene_4848_tx_4 6 + 639888 640746 . 1 859 0 -chrX 640033 640746 HC_gene_4848_tx_5 1 + 640033 640746 . 1 714 0 -chrX 640130 640685 HC_gene_4848_tx_6 5 + 640130 640685 . 1 556 0 -chrX 640130 640746 HC_gene_4848_tx_7 7 + 640130 640746 . 1 617 0 -chrX 640248 640746 HC_gene_4848_tx_8 2 + 640248 640746 . 1 499 0 -chrX 640333 640746 HC_gene_4848_tx_9 1 + 640333 640746 . 1 414 0 -chrX 640544 641374 MC_gene_5139_tx_1 1 - 640544 641374 . 1 831 0 -chrX 640654 641703 MC_gene_5140_tx_1 1 - 640654 641703 . 1 1050 0 -chrX 640716 641825 HC_gene_4849_tx_1 21 + 640716 641825 . 1 1110 0 -chrX 640772 641749 MC_gene_5140_tx_2 1 - 640772 641749 . 1 978 0 -chrX 641058 641825 HC_gene_4849_tx_2 10 + 641058 641825 . 1 768 0 -chrX 641976 643492 HC_gene_4850_tx_1 96 + 641976 643492 . 1 1517 0 -chrX 641976 643492 HC_gene_4850_tx_2 1 + 641976 643492 . 2 578,724 0,793 -chrX 641976 643492 HC_gene_4850_tx_3 1 + 641976 643492 . 2 551,812 0,705 -chrX 641976 643492 HC_gene_4850_tx_4 1 + 641976 643492 . 2 271,1136 0,381 -chrX 641976 643492 HC_gene_4850_tx_5 1 + 641976 643492 . 2 719,639 0,878 -chrX 641976 643492 HC_gene_4850_tx_6 1 + 641976 643492 . 2 352,1088 0,429 -chrX 642305 643492 HC_gene_4850_tx_7 19 + 642305 643492 . 1 1188 0 -chrX 642305 643492 HC_gene_4850_tx_8 1 + 642305 643492 . 2 842,263 0,925 -chrX 642737 643492 HC_gene_4850_tx_9 17 + 642737 643492 . 1 756 0 -chrX 643386 643832 HC_gene_5141_tx_1 20 - 643386 643832 . 1 447 0 -chrX 643386 643971 HC_gene_5141_tx_2 8 - 643386 643971 . 1 586 0 -chrX 643386 644145 HC_gene_5141_tx_3 115 - 643386 644145 . 1 760 0 -chrX 644263 646524 HC_gene_5142_tx_1 9 - 644263 646524 . 1 2262 0 -chrX 644328 644564 MC_gene_4851_tx_1 1 + 644328 644564 . 1 237 0 -chrX 644813 645345 MC_gene_4852_tx_1 1 + 644813 645345 . 1 533 0 -chrX 647413 649372 HC_gene_4853_tx_1 324 + 647413 649372 . 1 1960 0 -chrX 647413 649372 HC_gene_4853_tx_2 1 + 647413 649372 . 2 336,1431 0,529 -chrX 647413 649372 HC_gene_4853_tx_3 1 + 647413 649372 . 2 1177,514 0,1446 -chrX 647413 649372 HC_gene_4853_tx_4 1 + 647413 649372 . 2 256,1015 0,945 -chrX 647413 649372 HC_gene_4853_tx_5 1 + 647413 649372 . 2 556,532 0,1428 -chrX 647413 649372 HC_gene_4853_tx_6 1 + 647413 649372 . 2 1025,882 0,1078 -chrX 647413 649372 HC_gene_4853_tx_7 1 + 647413 649372 . 2 1839,50 0,1910 -chrX 647413 649372 HC_gene_4853_tx_8 1 + 647413 649372 . 2 591,936 0,1024 -chrX 647413 649416 HC_gene_4853_tx_9 1 + 647413 649416 . 2 1803,43 0,1961 -chrX 647413 649514 HC_gene_4853_tx_10 1 + 647413 649514 . 2 1066,962 0,1140 -chrX 647413 649514 HC_gene_4853_tx_11 24 + 647413 649514 . 1 2102 0 -chrX 647580 649372 HC_gene_4853_tx_12 32 + 647580 649372 . 1 1793 0 -chrX 647580 649514 HC_gene_4853_tx_13 1 + 647580 649514 . 2 1010,690 0,1245 -chrX 647580 649514 HC_gene_4853_tx_14 1 + 647580 649514 . 1 1935 0 -chrX 647869 649372 HC_gene_4853_tx_15 22 + 647869 649372 . 1 1504 0 -chrX 647869 649514 HC_gene_4853_tx_16 1 + 647869 649514 . 1 1646 0 -chrX 647948 649372 HC_gene_4853_tx_17 29 + 647948 649372 . 1 1425 0 -chrX 647948 649372 HC_gene_4853_tx_18 1 + 647948 649372 . 2 233,727 0,698 -chrX 647948 649372 HC_gene_4853_tx_19 1 + 647948 649372 . 2 550,532 0,893 -chrX 648156 649372 HC_gene_4853_tx_20 38 + 648156 649372 . 1 1217 0 -chrX 648156 649372 HC_gene_4853_tx_21 1 + 648156 649372 . 2 303,657 0,560 -chrX 648156 649514 HC_gene_4853_tx_22 1 + 648156 649514 . 1 1359 0 -chrX 648243 649372 HC_gene_4853_tx_23 48 + 648243 649372 . 1 1130 0 -chrX 648243 649514 HC_gene_4853_tx_24 2 + 648243 649514 . 1 1272 0 -chrX 648524 649372 HC_gene_4853_tx_25 59 + 648524 649372 . 1 849 0 -chrX 648524 649514 HC_gene_4853_tx_26 3 + 648524 649514 . 1 991 0 -chrX 648609 649372 HC_gene_4853_tx_27 34 + 648609 649372 . 1 764 0 -chrX 648609 649514 HC_gene_4853_tx_28 2 + 648609 649514 . 1 906 0 -chrX 648696 649372 HC_gene_4853_tx_29 73 + 648696 649372 . 1 677 0 -chrX 648696 649514 HC_gene_4853_tx_30 5 + 648696 649514 . 1 819 0 -chrX 648796 649372 HC_gene_4853_tx_31 101 + 648796 649372 . 1 577 0 -chrX 648796 649514 HC_gene_4853_tx_32 9 + 648796 649514 . 1 719 0 -chrX 649708 651370 HC_gene_4854_tx_1 7 + 649708 651370 . 1 1663 0 -chrX 650030 651370 HC_gene_4854_tx_2 6 + 650030 651370 . 1 1341 0 -chrX 650722 650949 MC_gene_5143_tx_1 1 - 650722 650949 . 1 228 0 -chrX 651864 652778 HC_gene_4855_tx_1 6430 + 651864 652778 . 1 915 0 -chrX 651970 652778 HC_gene_4855_tx_2 315 + 651970 652778 . 1 809 0 -chrX 652231 652778 HC_gene_4855_tx_3 742 + 652231 652778 . 1 548 0 -chrX 652698 654278 HC_gene_5144_tx_1 23 - 652698 654278 . 1 1581 0 -chrX 652698 654506 HC_gene_5144_tx_2 3 - 652698 654506 . 1 1809 0 -chrX 652780 654278 HC_gene_5144_tx_3 1 - 652780 654278 . 1 1499 0 -chrX 652790 654278 HC_gene_5144_tx_4 1 - 652790 654278 . 1 1489 0 -chrX 652792 654278 HC_gene_5144_tx_5 1 - 652792 654278 . 1 1487 0 -chrX 652823 654278 HC_gene_5144_tx_6 1 - 652823 654278 . 1 1456 0 -chrX 654393 654742 HC_gene_4856_tx_1 3 + 654393 654742 . 1 350 0 -chrX 654629 655458 HC_gene_5145_tx_1 9 - 654629 655458 . 1 830 0 -chrX 654629 655546 HC_gene_5145_tx_2 5 - 654629 655546 . 1 918 0 -chrX 654629 655709 HC_gene_5145_tx_3 8 - 654629 655709 . 1 1081 0 -chrX 654629 655863 HC_gene_5145_tx_4 4 - 654629 655863 . 1 1235 0 -chrX 654629 656011 HC_gene_5145_tx_5 53 - 654629 656011 . 1 1383 0 -chrX 656164 656526 HC_gene_5146_tx_1 22 - 656164 656526 . 1 363 0 -chrX 656164 657147 HC_gene_5146_tx_2 5 - 656164 657147 . 1 984 0 -chrX 656164 658176 HC_gene_5146_tx_3 1 - 656164 658176 . 1 2013 0 -chrX 656164 658300 HC_gene_5146_tx_4 1 - 656164 658300 . 1 2137 0 -chrX 656164 658651 HC_gene_5146_tx_5 29 - 656164 658651 . 1 2488 0 -chrX 656164 658651 HC_gene_5146_tx_6 1 - 656164 658651 . 2 495,1924 0,564 -chrX 656164 658651 HC_gene_5146_tx_7 1 - 656164 658651 . 2 840,1073 0,1415 -chrX 658840 661212 HC_gene_5147_tx_1 2 - 658840 661212 . 1 2373 0 -chrX 658840 661521 HC_gene_5147_tx_2 1 - 658840 661521 . 1 2682 0 -chrX 658840 661700 HC_gene_5147_tx_3 2 - 658840 661700 . 1 2861 0 -chrX 658840 662268 HC_gene_5147_tx_4 1 - 658840 662268 . 1 3429 0 -chrX 658840 662584 HC_gene_5147_tx_5 1 - 658840 662584 . 2 2476,750 0,2995 -chrX 658840 662584 HC_gene_5147_tx_6 1 - 658840 662584 . 1 3745 0 -chrX 658840 662837 HC_gene_5147_tx_7 2 - 658840 662837 . 1 3998 0 -chrX 663146 663703 LC_gene_4857_tx_1 1 + 663146 663703 . 1 558 0 -chrX 663665 665066 HC_gene_5148_tx_1 3 - 663665 665066 . 1 1402 0 -chrX 663749 664069 HC_gene_4858_tx_1 22 + 663749 664069 . 1 321 0 -chrX 664799 666609 MC_gene_4859_tx_1 1 + 664799 666609 . 1 1811 0 -chrX 665045 667092 HC_gene_5149_tx_1 1 - 665045 667092 . 1 2048 0 -chrX 665045 667151 HC_gene_5149_tx_2 1 - 665045 667151 . 1 2107 0 -chrX 665045 667190 HC_gene_5149_tx_3 1 - 665045 667190 . 1 2146 0 -chrX 665045 667200 HC_gene_5149_tx_4 3 - 665045 667200 . 1 2156 0 -chrX 665107 666928 HC_gene_5149_tx_5 2 - 665107 666928 . 1 1822 0 -chrX 665107 667092 HC_gene_5149_tx_6 1 - 665107 667092 . 1 1986 0 -chrX 665107 667092 HC_gene_5149_tx_7 1 - 665107 667092 . 2 786,1107 0,879 -chrX 665107 667148 HC_gene_5149_tx_8 1 - 665107 667148 . 1 2042 0 -chrX 665107 667151 HC_gene_5149_tx_9 1 - 665107 667151 . 1 2045 0 -chrX 665107 667152 HC_gene_5149_tx_10 1 - 665107 667152 . 1 2046 0 -chrX 665107 667153 HC_gene_5149_tx_11 1 - 665107 667153 . 1 2047 0 -chrX 665107 667169 HC_gene_5149_tx_12 1 - 665107 667169 . 1 2063 0 -chrX 665107 667180 HC_gene_5149_tx_13 1 - 665107 667180 . 1 2074 0 -chrX 665107 667189 HC_gene_5149_tx_14 1 - 665107 667189 . 1 2083 0 -chrX 665107 667200 HC_gene_5149_tx_15 28 - 665107 667200 . 1 2094 0 -chrX 665107 667200 HC_gene_5149_tx_16 1 - 665107 667200 . 2 1310,687 0,1407 -chrX 665107 667200 HC_gene_5149_tx_17 1 - 665107 667200 . 2 786,1201 0,893 -chrX 665107 667200 HC_gene_5149_tx_18 1 - 665107 667200 . 2 746,1269 0,825 -chrX 665107 667200 HC_gene_5149_tx_19 1 - 665107 667200 . 2 250,1148 0,946 -chrX 665107 667200 HC_gene_5149_tx_20 1 - 665107 667200 . 2 786,1033 0,1061 -chrX 665107 667200 HC_gene_5149_tx_21 1 - 665107 667200 . 2 737,1248 0,846 -chrX 665107 667200 HC_gene_5149_tx_22 1 - 665107 667200 . 2 878,1113 0,981 -chrX 665107 667200 HC_gene_5149_tx_23 1 - 665107 667200 . 2 936,1049 0,1045 -chrX 665246 667244 MC_gene_4860_tx_1 1 + 665246 667244 . 1 1999 0 -chrX 667377 669359 HC_gene_4861_tx_1 1 + 667377 669359 . 1 1983 0 -chrX 667594 668514 HC_gene_4861_tx_8 1 + 667594 668514 . 1 921 0 -chrX 667594 669359 HC_gene_4861_tx_2 6 + 667594 669359 . 1 1766 0 -chrX 667594 669480 HC_gene_4861_tx_3 6 + 667594 669480 . 1 1887 0 -chrX 667594 671016 HC_gene_4861_tx_9 2 + 667594 671016 . 1 3423 0 -chrX 667606 669480 HC_gene_4861_tx_4 1 + 667606 669480 . 1 1875 0 -chrX 667617 669480 HC_gene_4861_tx_5 1 + 667617 669480 . 1 1864 0 -chrX 667633 669480 HC_gene_4861_tx_6 1 + 667633 669480 . 1 1848 0 -chrX 667638 669480 HC_gene_4861_tx_7 1 + 667638 669480 . 1 1843 0 -chrX 668144 668514 HC_gene_4861_tx_10 1 + 668144 668514 . 1 371 0 -chrX 668144 673001 HC_gene_4861_tx_11 1 + 668144 673001 . 1 4858 0 -chrX 668502 669283 MC_gene_5150_tx_1 1 - 668502 669283 . 1 782 0 -chrX 669460 671016 HC_gene_4861_tx_12 2 + 669460 671016 . 1 1557 0 -chrX 669460 672759 HC_gene_4861_tx_13 1 + 669460 672759 . 2 1059,2145 0,1155 -chrX 669460 672792 HC_gene_4861_tx_14 1 + 669460 672792 . 1 3333 0 -chrX 669460 672793 HC_gene_4861_tx_15 1 + 669460 672793 . 1 3334 0 -chrX 669460 672802 HC_gene_4861_tx_16 1 + 669460 672802 . 1 3343 0 -chrX 669460 672815 HC_gene_4861_tx_17 1 + 669460 672815 . 1 3356 0 -chrX 669460 672835 HC_gene_4861_tx_18 3 + 669460 672835 . 1 3376 0 -chrX 669460 672837 HC_gene_4861_tx_19 1 + 669460 672837 . 1 3378 0 -chrX 669460 672915 HC_gene_4861_tx_20 1 + 669460 672915 . 1 3456 0 -chrX 669460 673727 HC_gene_4861_tx_21 1 + 669460 673727 . 1 4268 0 -chrX 669460 673727 HC_gene_4861_tx_22 1 + 669460 673727 . 2 1411,2744 0,1524 -chrX 671648 672258 LC_gene_5151_tx_1 1 - 671648 672258 . 1 611 0 -chrX 672248 672761 HC_gene_4861_tx_23 1 + 672248 672761 . 1 514 0 -chrX 672248 672790 HC_gene_4861_tx_24 1 + 672248 672790 . 1 543 0 -chrX 672248 672803 HC_gene_4861_tx_25 1 + 672248 672803 . 1 556 0 -chrX 672248 672820 HC_gene_4861_tx_26 1 + 672248 672820 . 1 573 0 -chrX 672248 672834 HC_gene_4861_tx_27 1 + 672248 672834 . 1 587 0 -chrX 672248 672835 HC_gene_4861_tx_28 3 + 672248 672835 . 1 588 0 -chrX 672248 672915 HC_gene_4861_tx_29 1 + 672248 672915 . 1 668 0 -chrX 672248 673727 HC_gene_4861_tx_30 1 + 672248 673727 . 1 1480 0 -chrX 672248 673727 HC_gene_4861_tx_31 1 + 672248 673727 . 2 987,445 0,1035 -chrX 672888 673727 HC_gene_4861_tx_32 83 + 672888 673727 . 1 840 0 -chrX 673049 673727 HC_gene_4861_tx_33 6 + 673049 673727 . 1 679 0 -chrX 673657 675150 HC_gene_5152_tx_1 4 - 673657 675150 . 1 1494 0 -chrX 673657 675206 HC_gene_5152_tx_2 1 - 673657 675206 . 1 1550 0 -chrX 673657 675721 HC_gene_5152_tx_3 2 - 673657 675721 . 1 2065 0 -chrX 673657 675924 HC_gene_5152_tx_4 14 - 673657 675924 . 1 2268 0 -chrX 673657 675924 HC_gene_5152_tx_5 1 - 673657 675924 . 2 991,1213 0,1055 -chrX 673657 676778 HC_gene_5152_tx_6 1 - 673657 676778 . 2 1362,853 0,2269 -chrX 675829 676778 HC_gene_5152_tx_7 4 - 675829 676778 . 1 950 0 -chrX 676064 676778 HC_gene_5152_tx_8 8 - 676064 676778 . 1 715 0 -chrX 676950 677336 HC_gene_4862_tx_1 264 + 676950 677336 . 1 387 0 -chrX 676950 677440 HC_gene_4862_tx_2 88 + 676950 677440 . 1 491 0 -chrX 676950 677548 HC_gene_4862_tx_3 12 + 676950 677548 . 1 599 0 -chrX 677351 678705 HC_gene_5153_tx_1 13 - 677351 678705 . 1 1355 0 -chrX 677351 678705 HC_gene_5153_tx_2 1 - 677351 678705 . 3 353,602,217 0,456,1138 -chrX 678815 683329 HC_gene_5154_tx_1 5 - 678815 683329 . 1 4515 0 -chrX 678902 680134 LC_gene_4863_tx_1 1 + 678902 680134 . 1 1233 0 -chrX 680072 680728 MC_gene_4864_tx_1 1 + 680072 680728 . 1 657 0 -chrX 684539 689449 HC_gene_4865_tx_1 3 + 684539 689449 . 1 4911 0 -chrX 684539 689449 HC_gene_4865_tx_2 1 + 684539 689449 . 2 1635,3203 0,1708 -chrX 687900 689449 HC_gene_4865_tx_3 3 + 687900 689449 . 1 1550 0 -chrX 689318 689911 HC_gene_5155_tx_1 98 - 689318 689911 . 1 594 0 -chrX 689318 690112 HC_gene_5155_tx_2 44 - 689318 690112 . 1 795 0 -chrX 689318 690379 HC_gene_5155_tx_3 31 - 689318 690379 . 1 1062 0 -chrX 689318 690588 HC_gene_5155_tx_4 304 - 689318 690588 . 1 1271 0 -chrX 690534 694827 HC_gene_5156_tx_1 1 - 690534 694827 . 1 4294 0 -chrX 690535 695757 HC_gene_5156_tx_2 1 - 690535 695757 . 1 5223 0 -chrX 690893 692335 LC_gene_4866_tx_1 1 + 690893 692335 . 1 1443 0 -chrX 695872 696694 HC_gene_4867_tx_1 1 + 695872 696694 . 1 823 0 -chrX 695872 697042 HC_gene_4867_tx_2 20 + 695872 697042 . 1 1171 0 -chrX 695872 697042 HC_gene_4867_tx_3 1 + 695872 697042 . 2 707,404 0,767 -chrX 695872 697042 HC_gene_4867_tx_4 1 + 695872 697042 . 2 517,571 0,600 -chrX 697119 698275 HC_gene_4868_tx_1 59 + 697119 698275 . 1 1157 0 -chrX 697119 698393 HC_gene_4868_tx_2 5 + 697119 698393 . 1 1275 0 -chrX 697285 698028 HC_gene_4868_tx_6 1 + 697285 698028 . 1 744 0 -chrX 697343 698275 HC_gene_4868_tx_3 5 + 697343 698275 . 1 933 0 -chrX 697407 698275 HC_gene_4868_tx_4 6 + 697407 698275 . 1 869 0 -chrX 697407 698393 HC_gene_4868_tx_5 2 + 697407 698393 . 1 987 0 -chrX 697730 698275 HC_gene_4868_tx_7 10 + 697730 698275 . 1 546 0 -chrX 697730 698393 HC_gene_4868_tx_8 1 + 697730 698393 . 1 664 0 -chrX 698196 698880 HC_gene_5157_tx_1 14 - 698196 698880 . 1 685 0 -chrX 698196 699125 HC_gene_5157_tx_2 22 - 698196 699125 . 1 930 0 -chrX 698196 700665 HC_gene_5157_tx_3 54 - 698196 700665 . 1 2470 0 -chrX 698196 700665 HC_gene_5157_tx_4 1 - 698196 700665 . 2 1408,448 0,2022 -chrX 700834 701760 HC_gene_4869_tx_1 95 + 700834 701760 . 1 927 0 -chrX 700834 701760 HC_gene_4869_tx_2 1 + 700834 701760 . 2 469,397 0,530 -chrX 700834 701760 HC_gene_4869_tx_3 1 + 700834 701760 . 2 369,444 0,483 -chrX 700834 701824 HC_gene_4869_tx_4 4 + 700834 701824 . 1 991 0 -chrX 701104 701760 HC_gene_4869_tx_5 13 + 701104 701760 . 1 657 0 -chrX 701104 701824 HC_gene_4869_tx_6 2 + 701104 701824 . 1 721 0 -chrX 701171 701760 HC_gene_4869_tx_7 10 + 701171 701760 . 1 590 0 -chrX 701171 701824 HC_gene_4869_tx_8 1 + 701171 701824 . 1 654 0 -chrX 701408 701760 HC_gene_4869_tx_9 22 + 701408 701760 . 1 353 0 -chrX 701937 702593 HC_gene_5158_tx_1 1106 - 701937 702593 . 1 657 0 -chrX 701937 702593 HC_gene_5158_tx_2 1 - 701937 702593 . 2 230,118 0,539 -chrX 701937 702593 HC_gene_5158_tx_3 1 - 701937 702593 . 2 295,302 0,355 -chrX 701937 702593 HC_gene_5158_tx_4 1 - 701937 702593 . 2 337,211 0,446 -chrX 701937 702593 HC_gene_5158_tx_5 1 - 701937 702593 . 2 320,256 0,401 -chrX 701937 702593 HC_gene_5158_tx_6 1 - 701937 702593 . 2 400,86 0,571 -chrX 701937 702807 HC_gene_5158_tx_7 1441 - 701937 702807 . 1 871 0 -chrX 701937 702807 HC_gene_5158_tx_8 1 - 701937 702807 . 2 367,454 0,417 -chrX 701937 702807 HC_gene_5158_tx_9 1 - 701937 702807 . 2 331,208 0,663 -chrX 701937 702807 HC_gene_5158_tx_10 1 - 701937 702807 . 2 171,590 0,281 -chrX 701937 702807 HC_gene_5158_tx_11 1 - 701937 702807 . 2 263,389 0,482 -chrX 701937 702807 HC_gene_5158_tx_12 1 - 701937 702807 . 2 482,332 0,539 -chrX 701937 702807 HC_gene_5158_tx_13 1 - 701937 702807 . 2 566,136 0,735 -chrX 701937 702807 HC_gene_5158_tx_14 1 - 701937 702807 . 2 320,170 0,701 -chrX 701937 702807 HC_gene_5158_tx_15 1 - 701937 702807 . 2 494,136 0,735 -chrX 701937 702807 HC_gene_5158_tx_16 1 - 701937 702807 . 2 497,208 0,663 -chrX 701937 702807 HC_gene_5158_tx_17 1 - 701937 702807 . 2 393,425 0,446 -chrX 701937 702807 HC_gene_5158_tx_18 1 - 701937 702807 . 2 272,379 0,492 -chrX 701937 702807 HC_gene_5158_tx_19 1 - 701937 702807 . 2 460,153 0,718 -chrX 701937 702807 HC_gene_5158_tx_20 1 - 701937 702807 . 2 558,153 0,718 -chrX 701937 702807 HC_gene_5158_tx_21 1 - 701937 702807 . 2 295,431 0,440 -chrX 701937 702807 HC_gene_5158_tx_22 1 - 701937 702807 . 2 525,208 0,663 -chrX 701937 702807 HC_gene_5158_tx_23 1 - 701937 702807 . 2 270,314 0,557 -chrX 701937 702807 HC_gene_5158_tx_24 1 - 701937 702807 . 2 252,389 0,482 -chrX 701937 702807 HC_gene_5158_tx_25 1 - 701937 702807 . 2 455,237 0,634 -chrX 701937 702807 HC_gene_5158_tx_26 1 - 701937 702807 . 2 495,110 0,761 -chrX 701937 702807 HC_gene_5158_tx_27 1 - 701937 702807 . 2 217,575 0,296 -chrX 701937 702807 HC_gene_5158_tx_28 1 - 701937 702807 . 2 354,332 0,539 -chrX 701937 702807 HC_gene_5158_tx_29 1 - 701937 702807 . 2 669,45 0,826 -chrX 701937 702807 HC_gene_5158_tx_30 1 - 701937 702807 . 2 280,545 0,326 -chrX 701937 702807 HC_gene_5158_tx_31 1 - 701937 702807 . 2 285,545 0,326 -chrX 701937 702807 HC_gene_5158_tx_32 1 - 701937 702807 . 2 374,398 0,473 -chrX 701937 702807 HC_gene_5158_tx_33 1 - 701937 702807 . 2 326,186 0,685 -chrX 701937 702807 HC_gene_5158_tx_34 1 - 701937 702807 . 2 370,110 0,761 -chrX 701937 702807 HC_gene_5158_tx_35 1 - 701937 702807 . 2 367,431 0,440 -chrX 701937 702807 HC_gene_5158_tx_36 1 - 701937 702807 . 2 669,117 0,754 -chrX 701937 703102 HC_gene_5158_tx_37 179 - 701937 703102 . 2 862,48 0,1118 -chrX 701937 703102 HC_gene_5158_tx_38 2 - 701937 703102 . 2 855,48 0,1118 -chrX 701937 703102 HC_gene_5158_tx_39 3 - 701937 703102 . 2 858,48 0,1118 -chrX 701937 703102 HC_gene_5158_tx_40 35 - 701937 703102 . 1 1166 0 -chrX 701937 703102 HC_gene_5158_tx_41 7 - 701937 703102 . 2 864,38 0,1128 -chrX 701937 703102 HC_gene_5158_tx_42 1 - 701937 703102 . 3 282,518,48 0,344,1118 -chrX 701937 703102 HC_gene_5158_tx_43 1 - 701937 703102 . 3 291,356,48 0,506,1118 -chrX 701937 703102 HC_gene_5158_tx_44 1 - 701937 703102 . 2 844,48 0,1118 -chrX 701937 703102 HC_gene_5158_tx_45 1 - 701937 703102 . 3 315,323,48 0,539,1118 -chrX 703127 705270 HC_gene_5159_tx_1 1 - 703127 705270 . 2 662,788 0,1356 -chrX 703127 705270 HC_gene_5159_tx_2 1 - 703127 705270 . 1 2144 0 -chrX 703400 705178 HC_gene_5159_tx_3 3 - 703400 705178 . 1 1779 0 -chrX 703400 705270 HC_gene_5159_tx_4 7 - 703400 705270 . 1 1871 0 -chrX 703400 705270 HC_gene_5159_tx_5 1 - 703400 705270 . 2 1467,296 0,1575 -chrX 703480 705270 HC_gene_5159_tx_6 10 - 703480 705270 . 1 1791 0 -chrX 704164 705257 HC_gene_4870_tx_1 1 + 704164 705257 . 1 1094 0 -chrX 704164 705635 HC_gene_4870_tx_2 1 + 704164 705635 . 1 1472 0 -chrX 705686 706937 HC_gene_4871_tx_1 166 + 705686 706937 . 1 1252 0 -chrX 705686 706937 HC_gene_4871_tx_2 1 + 705686 706937 . 2 45,763 0,489 -chrX 705686 706937 HC_gene_4871_tx_3 1 + 705686 706937 . 2 483,535 0,717 -chrX 705686 706937 HC_gene_4871_tx_4 1 + 705686 706937 . 2 110,410 0,842 -chrX 705686 707045 HC_gene_4871_tx_5 26 + 705686 707045 . 1 1360 0 -chrX 705686 707045 HC_gene_4871_tx_6 1 + 705686 707045 . 2 707,566 0,794 -chrX 705686 707189 HC_gene_4871_tx_7 41 + 705686 707189 . 1 1504 0 -chrX 705686 707189 HC_gene_4871_tx_8 1 + 705686 707189 . 2 904,544 0,960 -chrX 705891 706937 HC_gene_4871_tx_9 8 + 705891 706937 . 1 1047 0 -chrX 705891 706937 HC_gene_4871_tx_10 1 + 705891 706937 . 2 731,106 0,941 -chrX 705891 707189 HC_gene_4871_tx_11 5 + 705891 707189 . 1 1299 0 -chrX 705978 706937 HC_gene_4871_tx_12 29 + 705978 706937 . 1 960 0 -chrX 705978 706937 HC_gene_4871_tx_13 1 + 705978 706937 . 2 48,669 0,291 -chrX 705978 706937 HC_gene_4871_tx_14 1 + 705978 706937 . 2 138,777 0,183 -chrX 705978 707045 HC_gene_4871_tx_15 8 + 705978 707045 . 1 1068 0 -chrX 705978 707189 HC_gene_4871_tx_16 7 + 705978 707189 . 1 1212 0 -chrX 707209 708570 HC_gene_4872_tx_1 1 + 707209 708570 . 1 1362 0 -chrX 707209 708773 HC_gene_4872_tx_2 2 + 707209 708773 . 1 1565 0 -chrX 708639 709736 MC_gene_5160_tx_1 1 - 708639 709736 . 1 1098 0 -chrX 710046 711000 MC_gene_4873_tx_1 1 + 710046 711000 . 1 955 0 -chrX 712027 717591 HC_gene_5161_tx_1 1 - 712027 717591 . 1 5565 0 -chrX 717049 717876 LC_gene_4874_tx_1 1 + 717049 717876 . 1 828 0 -chrX 718222 718524 HC_gene_4875_tx_1 1 + 718222 718524 . 1 303 0 -chrX 718429 719203 HC_gene_5162_tx_1 1 - 718429 719203 . 1 775 0 -chrX 719428 721389 HC_gene_4876_tx_1 1 + 719428 721389 . 1 1962 0 -chrX 722017 725339 HC_gene_5163_tx_1 1 - 722017 725339 . 1 3323 0 -chrX 722370 724201 HC_gene_5163_tx_2 3 - 722370 724201 . 1 1832 0 -chrX 723354 723996 MC_gene_4877_tx_1 1 + 723354 723996 . 1 643 0 -chrX 723888 725339 HC_gene_5163_tx_3 1 - 723888 725339 . 1 1452 0 -chrX 724386 724699 HC_gene_4878_tx_1 1 + 724386 724699 . 1 314 0 -chrX 724386 724779 HC_gene_4878_tx_2 4 + 724386 724779 . 1 394 0 -chrX 724386 724981 HC_gene_4878_tx_3 5 + 724386 724981 . 1 596 0 -chrX 724590 725339 HC_gene_5163_tx_4 11 - 724590 725339 . 1 750 0 -chrX 725579 728350 HC_gene_4879_tx_1 1 + 725579 728350 . 1 2772 0 -chrX 725760 728351 HC_gene_4879_tx_2 1 + 725760 728351 . 1 2592 0 -chrX 727029 728327 HC_gene_4880_tx_1 1 + 727029 728327 . 1 1299 0 -chrX 727029 728350 HC_gene_4880_tx_2 1 + 727029 728350 . 1 1322 0 -chrX 727099 728355 HC_gene_4880_tx_3 1 + 727099 728355 . 1 1257 0 -chrX 728426 728871 HC_gene_5164_tx_1 13 - 728426 728871 . 1 446 0 -chrX 728426 729219 HC_gene_5164_tx_2 2 - 728426 729219 . 1 794 0 -chrX 729022 729867 LC_gene_4881_tx_1 1 + 729022 729867 . 1 846 0 -chrX 730481 731848 LC_gene_4882_tx_1 1 + 730481 731848 . 1 1368 0 -chrX 730583 732676 LC_gene_5165_tx_1 1 - 730583 732676 . 1 2094 0 -chrX 737435 742369 LC_gene_5166_tx_1 1 - 737435 742369 . 1 4935 0 -chrX 737895 742652 LC_gene_4883_tx_1 1 + 737895 742652 . 1 4758 0 -chrX 742216 743902 HC_gene_5167_tx_1 1 - 742216 743902 . 1 1687 0 -chrXI 3264 5738 HC_gene_5441_tx_1 4 - 3264 5738 . 1 2475 0 -chrXI 5675 6096 HC_gene_5168_tx_1 2 + 5675 6096 . 1 422 0 -chrXI 5675 6172 HC_gene_5168_tx_2 2 + 5675 6172 . 1 498 0 -chrXI 6005 7813 MC_gene_5442_tx_1 1 - 6005 7813 . 1 1809 0 -chrXI 6647 7650 LC_gene_5169_tx_1 1 + 6647 7650 . 1 1004 0 -chrXI 8197 8790 MC_gene_5170_tx_1 1 + 8197 8790 . 1 594 0 -chrXI 8767 11237 HC_gene_5443_tx_1 1 - 8767 11237 . 1 2471 0 -chrXI 11250 11527 HC_gene_5444_tx_1 1 - 11250 11527 . 1 278 0 -chrXI 11857 12036 MC_gene_5171_tx_1 1 + 11857 12036 . 1 180 0 -chrXI 13379 14400 HC_gene_5445_tx_1 1 - 13379 14400 . 1 1022 0 -chrXI 13718 14296 MC_gene_5172_tx_1 1 + 13718 14296 . 1 579 0 -chrXI 14531 15789 HC_gene_5173_tx_1 15 + 14531 15789 . 1 1259 0 -chrXI 15100 15789 HC_gene_5173_tx_2 5 + 15100 15789 . 1 690 0 -chrXI 16218 17184 LC_gene_5174_tx_1 1 + 16218 17184 . 1 967 0 -chrXI 17055 18412 HC_gene_5446_tx_1 9 - 17055 18412 . 1 1358 0 -chrXI 17145 17519 HC_gene_5446_tx_4 9 - 17145 17519 . 1 375 0 -chrXI 17145 18412 HC_gene_5446_tx_2 48 - 17145 18412 . 1 1268 0 -chrXI 17145 18790 HC_gene_5446_tx_5 1 - 17145 18790 . 1 1646 0 -chrXI 17297 17519 HC_gene_5446_tx_7 1 - 17297 17519 . 1 223 0 -chrXI 17297 18412 HC_gene_5446_tx_3 24 - 17297 18412 . 1 1116 0 -chrXI 17297 18790 HC_gene_5446_tx_6 2 - 17297 18790 . 1 1494 0 -chrXI 18092 18404 MC_gene_5175_tx_1 1 + 18092 18404 . 1 313 0 -chrXI 18261 18412 HC_gene_5446_tx_8 1 - 18261 18412 . 1 152 0 -chrXI 18657 19721 HC_gene_5176_tx_1 3 + 18657 19721 . 1 1065 0 -chrXI 19009 19721 HC_gene_5176_tx_2 2 + 19009 19721 . 1 713 0 -chrXI 19781 21221 HC_gene_5177_tx_1 2 + 19781 21221 . 1 1441 0 -chrXI 21126 24138 HC_gene_5447_tx_1 1 - 21126 24138 . 1 3013 0 -chrXI 21225 24224 HC_gene_5178_tx_1 1 + 21225 24224 . 1 3000 0 -chrXI 23778 24224 HC_gene_5178_tx_2 7 + 23778 24224 . 1 447 0 -chrXI 24016 24224 HC_gene_5178_tx_3 1 + 24016 24224 . 1 209 0 -chrXI 25182 26400 HC_gene_5179_tx_1 233 + 25182 26400 . 1 1219 0 -chrXI 25182 26400 HC_gene_5179_tx_2 1 + 25182 26400 . 2 452,412 0,807 -chrXI 25182 26400 HC_gene_5179_tx_3 1 + 25182 26400 . 2 49,469 0,750 -chrXI 25182 26400 HC_gene_5179_tx_4 1 + 25182 26400 . 2 493,467 0,752 -chrXI 25182 26400 HC_gene_5179_tx_5 1 + 25182 26400 . 2 583,412 0,807 -chrXI 25182 26696 HC_gene_5179_tx_6 1 + 25182 26696 . 1 1515 0 -chrXI 25338 25700 HC_gene_5179_tx_9 1 + 25338 25700 . 1 363 0 -chrXI 25338 26400 HC_gene_5179_tx_7 56 + 25338 26400 . 1 1063 0 -chrXI 25338 26400 HC_gene_5179_tx_8 1 + 25338 26400 . 2 931,69 0,994 -chrXI 25876 26400 HC_gene_5179_tx_10 123 + 25876 26400 . 1 525 0 -chrXI 25876 26696 HC_gene_5179_tx_11 1 + 25876 26696 . 1 821 0 -chrXI 26555 27250 HC_gene_5448_tx_1 5 - 26555 27250 . 1 696 0 -chrXI 26555 30737 HC_gene_5448_tx_3 3 - 26555 30737 . 1 4183 0 -chrXI 26635 27250 HC_gene_5448_tx_2 2 - 26635 27250 . 1 616 0 -chrXI 26635 30737 HC_gene_5448_tx_4 2 - 26635 30737 . 1 4103 0 -chrXI 26635 30737 HC_gene_5448_tx_5 1 - 26635 30737 . 3 359,1429,2139 0,405,1964 -chrXI 26635 30737 HC_gene_5448_tx_6 1 - 26635 30737 . 2 1143,2860 0,1243 -chrXI 30917 31435 LC_gene_5180_tx_1 1 + 30917 31435 . 1 519 0 -chrXI 31013 31296 HC_gene_5449_tx_1 11 - 31013 31296 . 1 284 0 -chrXI 31013 31471 HC_gene_5449_tx_2 13 - 31013 31471 . 1 459 0 -chrXI 31013 31762 HC_gene_5449_tx_3 64 - 31013 31762 . 1 750 0 -chrXI 31466 31928 LC_gene_5181_tx_1 1 + 31466 31928 . 1 463 0 -chrXI 31881 32559 HC_gene_5450_tx_1 6 - 31881 32559 . 1 679 0 -chrXI 31881 34055 HC_gene_5450_tx_2 1 - 31881 34055 . 3 459,39,917 0,526,1258 -chrXI 31881 34055 HC_gene_5450_tx_3 2 - 31881 34055 . 1 2175 0 -chrXI 31881 34129 HC_gene_5450_tx_4 31 - 31881 34129 . 1 2249 0 -chrXI 31881 34129 HC_gene_5450_tx_5 1 - 31881 34129 . 2 1176,1025 0,1224 -chrXI 31881 34129 HC_gene_5450_tx_6 1 - 31881 34129 . 2 2072,140 0,2109 -chrXI 34417 36540 HC_gene_5182_tx_1 10 + 34417 36540 . 1 2124 0 -chrXI 34417 36659 HC_gene_5182_tx_2 48 + 34417 36659 . 1 2243 0 -chrXI 34417 36659 HC_gene_5182_tx_3 1 + 34417 36659 . 2 1193,1003 0,1240 -chrXI 34417 36659 HC_gene_5182_tx_4 1 + 34417 36659 . 2 1170,1012 0,1231 -chrXI 34417 36659 HC_gene_5182_tx_5 1 + 34417 36659 . 2 1170,991 0,1252 -chrXI 34417 36659 HC_gene_5182_tx_6 1 + 34417 36659 . 2 680,1485 0,758 -chrXI 34417 36659 HC_gene_5182_tx_7 1 + 34417 36659 . 2 1266,878 0,1365 -chrXI 34721 36540 HC_gene_5182_tx_8 1 + 34721 36540 . 1 1820 0 -chrXI 34721 36659 HC_gene_5182_tx_9 3 + 34721 36659 . 1 1939 0 -chrXI 35938 36540 HC_gene_5182_tx_10 5 + 35938 36540 . 1 603 0 -chrXI 35938 36659 HC_gene_5182_tx_11 14 + 35938 36659 . 1 722 0 -chrXI 36160 36540 HC_gene_5182_tx_12 3 + 36160 36540 . 1 381 0 -chrXI 36160 36659 HC_gene_5182_tx_14 8 + 36160 36659 . 1 500 0 -chrXI 36223 36540 HC_gene_5182_tx_13 3 + 36223 36540 . 1 318 0 -chrXI 36223 36659 HC_gene_5182_tx_15 36 + 36223 36659 . 1 437 0 -chrXI 36393 36659 HC_gene_5182_tx_16 18 + 36393 36659 . 1 267 0 -chrXI 36516 37654 HC_gene_5451_tx_1 8 - 36516 37654 . 1 1139 0 -chrXI 36516 38174 HC_gene_5451_tx_2 58 - 36516 38174 . 1 1659 0 -chrXI 36516 38174 HC_gene_5451_tx_3 1 - 36516 38174 . 2 707,892 0,767 -chrXI 36516 38174 HC_gene_5451_tx_4 1 - 36516 38174 . 2 116,1490 0,169 -chrXI 36656 38434 LC_gene_5183_tx_1 1 + 36656 38434 . 1 1779 0 -chrXI 38370 38900 LC_gene_5452_tx_1 1 - 38370 38900 . 1 531 0 -chrXI 38642 42334 HC_gene_5184_tx_1 1 + 38642 42334 . 1 3693 0 -chrXI 39113 42334 HC_gene_5184_tx_2 49 + 39113 42334 . 1 3222 0 -chrXI 39113 42334 HC_gene_5184_tx_3 1 + 39113 42334 . 3 1255,1201,597 0,1301,2625 -chrXI 39113 42334 HC_gene_5184_tx_4 1 + 39113 42334 . 2 1188,1977 0,1245 -chrXI 39113 42334 HC_gene_5184_tx_5 1 + 39113 42334 . 2 1454,1708 0,1514 -chrXI 39113 42334 HC_gene_5184_tx_6 1 + 39113 42334 . 2 561,2405 0,817 -chrXI 39113 42334 HC_gene_5184_tx_7 1 + 39113 42334 . 2 1797,1370 0,1852 -chrXI 39124 42334 HC_gene_5184_tx_8 1 + 39124 42334 . 2 1549,1553 0,1658 -chrXI 39129 42334 HC_gene_5184_tx_9 1 + 39129 42334 . 2 2165,960 0,2246 -chrXI 39300 42334 HC_gene_5184_tx_10 10 + 39300 42334 . 1 3035 0 -chrXI 39300 42334 HC_gene_5184_tx_11 1 + 39300 42334 . 2 381,2274 0,761 -chrXI 39639 42334 HC_gene_5184_tx_12 5 + 39639 42334 . 1 2696 0 -chrXI 39695 42334 HC_gene_5184_tx_13 1 + 39695 42334 . 2 1596,965 0,1675 -chrXI 39695 42334 HC_gene_5184_tx_14 2 + 39695 42334 . 1 2640 0 -chrXI 39918 42334 HC_gene_5184_tx_15 9 + 39918 42334 . 1 2417 0 -chrXI 39918 42334 HC_gene_5184_tx_16 1 + 39918 42334 . 2 475,1448 0,969 -chrXI 40265 42334 HC_gene_5184_tx_17 8 + 40265 42334 . 1 2070 0 -chrXI 40533 42334 HC_gene_5184_tx_18 5 + 40533 42334 . 1 1802 0 -chrXI 40664 42334 HC_gene_5184_tx_19 1 + 40664 42334 . 2 572,1023 0,648 -chrXI 40664 42334 HC_gene_5184_tx_20 28 + 40664 42334 . 1 1671 0 -chrXI 40664 42334 HC_gene_5184_tx_21 1 + 40664 42334 . 2 264,1339 0,332 -chrXI 41008 42334 HC_gene_5184_tx_22 14 + 41008 42334 . 1 1327 0 -chrXI 41120 42334 HC_gene_5184_tx_23 10 + 41120 42334 . 1 1215 0 -chrXI 41120 42334 HC_gene_5184_tx_24 1 + 41120 42334 . 2 171,895 0,320 -chrXI 41293 42334 HC_gene_5184_tx_25 20 + 41293 42334 . 1 1042 0 -chrXI 41535 42334 HC_gene_5184_tx_26 60 + 41535 42334 . 1 800 0 -chrXI 41742 42334 HC_gene_5184_tx_27 55 + 41742 42334 . 1 593 0 -chrXI 42246 42705 HC_gene_5453_tx_1 1 - 42246 42705 . 1 460 0 -chrXI 42246 44356 HC_gene_5453_tx_2 2 - 42246 44356 . 1 2111 0 -chrXI 42246 45440 HC_gene_5453_tx_6 1 - 42246 45440 . 1 3195 0 -chrXI 42367 42705 HC_gene_5453_tx_7 1 - 42367 42705 . 1 339 0 -chrXI 42367 44356 HC_gene_5453_tx_3 2 - 42367 44356 . 1 1990 0 -chrXI 42367 44560 HC_gene_5453_tx_4 1 - 42367 44560 . 1 2194 0 -chrXI 42367 44788 HC_gene_5453_tx_5 2 - 42367 44788 . 1 2422 0 -chrXI 46877 47216 LC_gene_5454_tx_1 1 - 46877 47216 . 1 340 0 -chrXI 46961 48038 HC_gene_5185_tx_1 1 + 46961 48038 . 1 1078 0 -chrXI 47147 48038 HC_gene_5185_tx_2 16 + 47147 48038 . 1 892 0 -chrXI 48162 49009 HC_gene_5186_tx_1 210 + 48162 49009 . 1 848 0 -chrXI 48261 49009 HC_gene_5186_tx_2 5 + 48261 49009 . 1 749 0 -chrXI 48325 49009 HC_gene_5186_tx_3 26 + 48325 49009 . 1 685 0 -chrXI 48383 49009 HC_gene_5186_tx_4 4 + 48383 49009 . 1 627 0 -chrXI 48936 49707 HC_gene_5455_tx_1 8 - 48936 49707 . 1 772 0 -chrXI 48936 49844 HC_gene_5455_tx_2 87 - 48936 49844 . 1 909 0 -chrXI 48936 49844 HC_gene_5455_tx_3 1 - 48936 49844 . 2 319,549 0,360 -chrXI 48936 49844 HC_gene_5455_tx_4 1 - 48936 49844 . 2 725,87 0,822 -chrXI 49004 49707 HC_gene_5455_tx_5 1 - 49004 49707 . 1 704 0 -chrXI 49004 49844 HC_gene_5455_tx_6 10 - 49004 49844 . 1 841 0 -chrXI 50019 50865 HC_gene_5187_tx_1 12 + 50019 50865 . 1 847 0 -chrXI 51663 52393 MC_gene_5188_tx_1 1 + 51663 52393 . 1 731 0 -chrXI 52071 52474 MC_gene_5189_tx_1 1 + 52071 52474 . 1 404 0 -chrXI 52660 53477 HC_gene_5190_tx_1 10 + 52660 53477 . 1 818 0 -chrXI 53154 53477 HC_gene_5190_tx_2 10 + 53154 53477 . 1 324 0 -chrXI 53392 53703 MC_gene_5456_tx_1 1 - 53392 53703 . 1 312 0 -chrXI 53669 55777 HC_gene_5191_tx_1 19 + 53669 55777 . 1 2109 0 -chrXI 53861 55777 HC_gene_5191_tx_2 3 + 53861 55777 . 1 1917 0 -chrXI 54114 55777 HC_gene_5191_tx_3 4 + 54114 55777 . 1 1664 0 -chrXI 54692 55777 HC_gene_5191_tx_4 8 + 54692 55777 . 1 1086 0 -chrXI 55115 55777 HC_gene_5191_tx_5 18 + 55115 55777 . 1 663 0 -chrXI 55270 55777 HC_gene_5191_tx_6 11 + 55270 55777 . 1 508 0 -chrXI 55832 56532 HC_gene_5457_tx_1 8 - 55832 56532 . 1 701 0 -chrXI 61455 63525 MC_gene_5458_tx_1 1 - 61455 63525 . 1 2071 0 -chrXI 63711 64186 HC_gene_5459_tx_1 15 - 63711 64186 . 1 476 0 -chrXI 63711 64346 HC_gene_5459_tx_2 1 - 63711 64346 . 2 504,78 0,558 -chrXI 63711 64346 HC_gene_5459_tx_3 1 - 63711 64346 . 2 453,80 0,556 -chrXI 63711 64346 HC_gene_5459_tx_4 23 - 63711 64346 . 1 636 0 -chrXI 63711 64346 HC_gene_5459_tx_5 1 - 63711 64346 . 2 333,56 0,580 -chrXI 63711 64346 HC_gene_5459_tx_6 1 - 63711 64346 . 2 384,34 0,602 -chrXI 63711 66261 HC_gene_5459_tx_7 2 - 63711 66261 . 1 2551 0 -chrXI 63711 66849 HC_gene_5459_tx_8 2 - 63711 66849 . 1 3139 0 -chrXI 63711 67512 HC_gene_5459_tx_9 3 - 63711 67512 . 1 3802 0 -chrXI 65960 66467 LC_gene_5192_tx_1 1 + 65960 66467 . 1 508 0 -chrXI 66491 67696 HC_gene_5193_tx_1 8 + 66491 67696 . 1 1206 0 -chrXI 66491 67766 HC_gene_5193_tx_2 2 + 66491 67766 . 1 1276 0 -chrXI 68093 70395 HC_gene_5460_tx_1 1 - 68093 70395 . 1 2303 0 -chrXI 68609 70256 HC_gene_5460_tx_2 1 - 68609 70256 . 2 1253,265 0,1383 -chrXI 68609 70256 HC_gene_5460_tx_3 1 - 68609 70256 . 1 1648 0 -chrXI 69798 70525 MC_gene_5194_tx_1 1 + 69798 70525 . 1 728 0 -chrXI 70257 70494 HC_gene_5461_tx_1 1 - 70257 70494 . 1 238 0 -chrXI 70257 70519 HC_gene_5461_tx_2 1 - 70257 70519 . 1 263 0 -chrXI 70430 70954 HC_gene_5462_tx_1 1 - 70430 70954 . 1 525 0 -chrXI 70430 73129 HC_gene_5462_tx_2 1 - 70430 73129 . 1 2700 0 -chrXI 70430 73880 HC_gene_5462_tx_3 1 - 70430 73880 . 1 3451 0 -chrXI 70430 73884 HC_gene_5462_tx_4 1 - 70430 73884 . 1 3455 0 -chrXI 70763 72989 MC_gene_5195_tx_1 1 + 70763 72989 . 1 2227 0 -chrXI 74023 74351 HC_gene_5196_tx_1 3 + 74023 74351 . 1 329 0 -chrXI 74627 74857 MC_gene_5197_tx_1 1 + 74627 74857 . 1 231 0 -chrXI 74783 75314 HC_gene_5463_tx_1 39 - 74783 75314 . 1 532 0 -chrXI 74783 75582 HC_gene_5463_tx_2 340 - 74783 75582 . 1 800 0 -chrXI 75786 77162 HC_gene_5198_tx_1 123 + 75786 77162 . 1 1377 0 -chrXI 75786 77162 HC_gene_5198_tx_2 1 + 75786 77162 . 2 564,747 0,630 -chrXI 75786 77162 HC_gene_5198_tx_3 1 + 75786 77162 . 2 322,906 0,471 -chrXI 75885 77162 HC_gene_5198_tx_4 4 + 75885 77162 . 1 1278 0 -chrXI 75998 77162 HC_gene_5198_tx_5 32 + 75998 77162 . 1 1165 0 -chrXI 75998 77162 HC_gene_5198_tx_6 1 + 75998 77162 . 2 670,441 0,724 -chrXI 76199 77162 HC_gene_5198_tx_7 28 + 76199 77162 . 1 964 0 -chrXI 76229 77162 HC_gene_5198_tx_8 1 + 76229 77162 . 2 509,369 0,565 -chrXI 76485 77162 HC_gene_5198_tx_9 25 + 76485 77162 . 1 678 0 -chrXI 76721 77162 HC_gene_5198_tx_10 28 + 76721 77162 . 1 442 0 -chrXI 77040 78665 HC_gene_5464_tx_1 11 - 77040 78665 . 1 1626 0 -chrXI 77040 78665 HC_gene_5464_tx_2 1 - 77040 78665 . 2 99,1481 0,145 -chrXI 77040 78665 HC_gene_5464_tx_3 1 - 77040 78665 . 2 537,1015 0,611 -chrXI 77990 78665 HC_gene_5464_tx_4 2 - 77990 78665 . 1 676 0 -chrXI 78755 79317 HC_gene_5465_tx_1 8 - 78755 79317 . 1 563 0 -chrXI 78755 79914 HC_gene_5465_tx_2 27 - 78755 79914 . 1 1160 0 -chrXI 80021 80374 HC_gene_5466_tx_1 102 - 80021 80374 . 1 354 0 -chrXI 80021 80576 HC_gene_5466_tx_2 510 - 80021 80576 . 1 556 0 -chrXI 80124 80948 MC_gene_5199_tx_1 1 + 80124 80948 . 1 825 0 -chrXI 81004 82727 HC_gene_5200_tx_1 50 + 81004 82727 . 1 1724 0 -chrXI 81506 82727 HC_gene_5200_tx_2 7 + 81506 82727 . 1 1222 0 -chrXI 81907 82727 HC_gene_5200_tx_3 9 + 81907 82727 . 1 821 0 -chrXI 82908 83720 HC_gene_5201_tx_1 120 + 82908 83720 . 2 91,646 0,167 -chrXI 82908 83720 HC_gene_5201_tx_2 21 + 82908 83720 . 2 95,639 0,174 -chrXI 82908 83720 HC_gene_5201_tx_3 8 + 82908 83720 . 2 91,639 0,174 -chrXI 82908 83720 HC_gene_5201_tx_4 58 + 82908 83720 . 1 813 0 -chrXI 82908 83720 HC_gene_5201_tx_5 1 + 82908 83720 . 2 95,646 0,167 -chrXI 82908 83720 HC_gene_5201_tx_6 1 + 82908 83720 . 2 263,459 0,354 -chrXI 82908 83940 HC_gene_5201_tx_7 3 + 82908 83940 . 2 91,866 0,167 -chrXI 82908 83940 HC_gene_5201_tx_8 1 + 82908 83940 . 1 1033 0 -chrXI 82908 84027 HC_gene_5201_tx_9 3 + 82908 84027 . 1 1120 0 -chrXI 83283 83720 HC_gene_5201_tx_10 44 + 83283 83720 . 1 438 0 -chrXI 83283 83940 HC_gene_5201_tx_11 2 + 83283 83940 . 1 658 0 -chrXI 84604 85261 HC_gene_5202_tx_1 2 + 84604 85261 . 1 658 0 -chrXI 84604 86039 HC_gene_5202_tx_2 1 + 84604 86039 . 2 788,530 0,906 -chrXI 84604 86039 HC_gene_5202_tx_3 19 + 84604 86039 . 1 1436 0 -chrXI 84604 86039 HC_gene_5202_tx_4 1 + 84604 86039 . 2 731,544 0,892 -chrXI 85940 88601 HC_gene_5467_tx_1 2 - 85940 88601 . 1 2662 0 -chrXI 86017 88998 HC_gene_5467_tx_2 1 - 86017 88998 . 1 2982 0 -chrXI 86135 88601 HC_gene_5467_tx_3 3 - 86135 88601 . 1 2467 0 -chrXI 88734 89230 HC_gene_5203_tx_1 3 + 88734 89230 . 1 497 0 -chrXI 89119 91140 MC_gene_5468_tx_1 1 - 89119 91140 . 1 2022 0 -chrXI 89155 91049 MC_gene_5468_tx_2 1 - 89155 91049 . 1 1895 0 -chrXI 91465 93344 HC_gene_5469_tx_1 1 - 91465 93344 . 1 1880 0 -chrXI 92190 93344 HC_gene_5469_tx_2 1 - 92190 93344 . 1 1155 0 -chrXI 92313 93399 MC_gene_5204_tx_1 1 + 92313 93399 . 1 1087 0 -chrXI 92642 92961 HC_gene_5469_tx_3 13 - 92642 92961 . 1 320 0 -chrXI 92642 93054 HC_gene_5469_tx_4 12 - 92642 93054 . 1 413 0 -chrXI 92642 93344 HC_gene_5469_tx_5 106 - 92642 93344 . 1 703 0 -chrXI 92642 93558 HC_gene_5469_tx_6 9 - 92642 93558 . 1 917 0 -chrXI 92642 93650 HC_gene_5469_tx_7 8 - 92642 93650 . 1 1009 0 -chrXI 92642 93650 HC_gene_5469_tx_8 5 - 92642 93650 . 2 725,185 0,824 -chrXI 92642 93650 HC_gene_5469_tx_9 1 - 92642 93650 . 2 705,185 0,824 -chrXI 92642 93650 HC_gene_5469_tx_10 1 - 92642 93650 . 2 649,189 0,820 -chrXI 92642 93650 HC_gene_5469_tx_11 1 - 92642 93650 . 2 725,180 0,829 -chrXI 92642 93650 HC_gene_5469_tx_12 1 - 92642 93650 . 2 725,135 0,874 -chrXI 94031 94408 HC_gene_5470_tx_1 1 - 94031 94408 . 2 29,259 0,119 -chrXI 94031 94408 HC_gene_5470_tx_2 1 - 94031 94408 . 1 378 0 -chrXI 94145 96281 HC_gene_5205_tx_1 8 + 94145 96281 . 1 2137 0 -chrXI 94145 96379 HC_gene_5205_tx_2 41 + 94145 96379 . 1 2235 0 -chrXI 94145 96379 HC_gene_5205_tx_3 1 + 94145 96379 . 2 237,1604 0,631 -chrXI 94145 96379 HC_gene_5205_tx_4 1 + 94145 96379 . 2 1414,772 0,1463 -chrXI 94625 96281 HC_gene_5205_tx_5 4 + 94625 96281 . 1 1657 0 -chrXI 94625 96379 HC_gene_5205_tx_6 9 + 94625 96379 . 1 1755 0 -chrXI 95445 96281 HC_gene_5205_tx_7 3 + 95445 96281 . 1 837 0 -chrXI 95445 96379 HC_gene_5205_tx_8 17 + 95445 96379 . 1 935 0 -chrXI 95541 96325 MC_gene_5471_tx_1 1 - 95541 96325 . 1 785 0 -chrXI 96604 98443 HC_gene_5206_tx_1 52 + 96604 98443 . 1 1840 0 -chrXI 96604 98443 HC_gene_5206_tx_2 1 + 96604 98443 . 2 1053,721 0,1119 -chrXI 96604 98443 HC_gene_5206_tx_3 1 + 96604 98443 . 2 283,643 0,1197 -chrXI 96604 98443 HC_gene_5206_tx_4 1 + 96604 98443 . 2 974,807 0,1033 -chrXI 96604 98443 HC_gene_5206_tx_5 1 + 96604 98443 . 2 1042,710 0,1130 -chrXI 96604 98443 HC_gene_5206_tx_6 1 + 96604 98443 . 2 1699,74 0,1766 -chrXI 96604 98443 HC_gene_5206_tx_7 1 + 96604 98443 . 2 1721,74 0,1766 -chrXI 96862 98443 HC_gene_5206_tx_8 1 + 96862 98443 . 2 237,1256 0,326 -chrXI 96862 98443 HC_gene_5206_tx_9 1 + 96862 98443 . 1 1582 0 -chrXI 98354 99201 MC_gene_5472_tx_1 1 - 98354 99201 . 1 848 0 -chrXI 98446 99584 MC_gene_5473_tx_1 1 - 98446 99584 . 1 1139 0 -chrXI 98522 99662 MC_gene_5473_tx_2 1 - 98522 99662 . 1 1141 0 -chrXI 98550 99777 HC_gene_5207_tx_1 41 + 98550 99777 . 1 1228 0 -chrXI 100153 100594 HC_gene_5208_tx_1 1 + 100153 100594 . 1 442 0 -chrXI 100346 100480 HC_gene_5208_tx_2 2 + 100346 100480 . 1 135 0 -chrXI 100346 100594 HC_gene_5208_tx_3 8 + 100346 100594 . 1 249 0 -chrXI 100459 100972 LC_gene_5474_tx_1 1 - 100459 100972 . 1 514 0 -chrXI 101224 101765 HC_gene_5209_tx_1 1 + 101224 101765 . 1 542 0 -chrXI 104911 106913 HC_gene_5210_tx_1 31 + 104911 106913 . 1 2003 0 -chrXI 105516 106913 HC_gene_5210_tx_2 40 + 105516 106913 . 1 1398 0 -chrXI 105673 106913 HC_gene_5210_tx_3 70 + 105673 106913 . 1 1241 0 -chrXI 106023 106913 HC_gene_5210_tx_4 29 + 106023 106913 . 1 891 0 -chrXI 106101 106913 HC_gene_5210_tx_5 65 + 106101 106913 . 1 813 0 -chrXI 106300 106913 HC_gene_5210_tx_6 92 + 106300 106913 . 1 614 0 -chrXI 106558 106913 HC_gene_5210_tx_7 126 + 106558 106913 . 1 356 0 -chrXI 106814 107659 LC_gene_5475_tx_1 1 - 106814 107659 . 1 846 0 -chrXI 107140 108725 HC_gene_5211_tx_1 203 + 107140 108725 . 1 1586 0 -chrXI 107140 108725 HC_gene_5211_tx_2 1 + 107140 108725 . 2 671,842 0,744 -chrXI 107140 108725 HC_gene_5211_tx_3 1 + 107140 108725 . 2 1254,268 0,1318 -chrXI 107140 108725 HC_gene_5211_tx_4 1 + 107140 108725 . 2 65,1148 0,438 -chrXI 107140 108725 HC_gene_5211_tx_5 1 + 107140 108725 . 2 1416,98 0,1488 -chrXI 107140 108725 HC_gene_5211_tx_6 1 + 107140 108725 . 3 548,661,194 0,643,1392 -chrXI 107140 108878 HC_gene_5211_tx_7 6 + 107140 108878 . 1 1739 0 -chrXI 107430 108725 HC_gene_5211_tx_8 21 + 107430 108725 . 1 1296 0 -chrXI 107646 108725 HC_gene_5211_tx_9 26 + 107646 108725 . 1 1080 0 -chrXI 107646 108725 HC_gene_5211_tx_10 1 + 107646 108725 . 2 334,648 0,432 -chrXI 107759 108725 HC_gene_5211_tx_11 42 + 107759 108725 . 1 967 0 -chrXI 108024 108725 HC_gene_5211_tx_12 60 + 108024 108725 . 1 702 0 -chrXI 108154 108725 HC_gene_5211_tx_13 49 + 108154 108725 . 1 572 0 -chrXI 108154 108878 HC_gene_5211_tx_14 1 + 108154 108878 . 1 725 0 -chrXI 109248 110240 HC_gene_5212_tx_1 2279 + 109248 110240 . 2 330,357 0,636 -chrXI 109248 110240 HC_gene_5212_tx_2 220 + 109248 110240 . 2 325,359 0,634 -chrXI 109248 110240 HC_gene_5212_tx_3 1 + 109248 110240 . 2 330,311 0,682 -chrXI 109248 110240 HC_gene_5212_tx_4 59 + 109248 110240 . 2 316,359 0,634 -chrXI 109248 110240 HC_gene_5212_tx_5 1 + 109248 110240 . 2 334,357 0,636 -chrXI 109248 110240 HC_gene_5212_tx_6 48 + 109248 110240 . 2 330,350 0,643 -chrXI 109248 110240 HC_gene_5212_tx_7 33 + 109248 110240 . 1 993 0 -chrXI 109248 110240 HC_gene_5212_tx_8 1 + 109248 110240 . 2 325,383 0,610 -chrXI 109248 110240 HC_gene_5212_tx_9 4 + 109248 110240 . 2 325,337 0,656 -chrXI 109248 110240 HC_gene_5212_tx_10 1 + 109248 110240 . 2 321,357 0,636 -chrXI 109248 110240 HC_gene_5212_tx_11 1 + 109248 110240 . 2 350,337 0,656 -chrXI 109248 110240 HC_gene_5212_tx_12 1 + 109248 110240 . 2 355,302 0,691 -chrXI 109248 110240 HC_gene_5212_tx_13 1 + 109248 110240 . 3 84,56,357 0,274,636 -chrXI 109248 110240 HC_gene_5212_tx_14 1 + 109248 110240 . 2 350,306 0,687 -chrXI 109248 110240 HC_gene_5212_tx_15 1 + 109248 110240 . 2 330,342 0,651 -chrXI 109248 110240 HC_gene_5212_tx_16 1 + 109248 110240 . 2 325,327 0,666 -chrXI 109248 110240 HC_gene_5212_tx_17 1 + 109248 110240 . 3 124,145,359 0,180,634 -chrXI 109248 110240 HC_gene_5212_tx_18 1 + 109248 110240 . 2 316,337 0,656 -chrXI 109248 110240 HC_gene_5212_tx_19 1 + 109248 110240 . 2 311,357 0,636 -chrXI 109248 110240 HC_gene_5212_tx_20 1 + 109248 110240 . 2 306,359 0,634 -chrXI 109248 110240 HC_gene_5212_tx_21 1 + 109248 110240 . 2 274,327 0,666 -chrXI 109248 110240 HC_gene_5212_tx_22 1 + 109248 110240 . 2 278,357 0,636 -chrXI 109248 110240 HC_gene_5212_tx_23 1 + 109248 110240 . 3 151,78,337 0,247,656 -chrXI 109248 110240 HC_gene_5212_tx_24 1 + 109248 110240 . 2 316,327 0,666 -chrXI 109248 110240 HC_gene_5212_tx_25 1 + 109248 110240 . 2 325,348 0,645 -chrXI 109248 110240 HC_gene_5212_tx_26 1 + 109248 110240 . 2 308,359 0,634 -chrXI 109248 110240 HC_gene_5212_tx_27 1 + 109248 110240 . 3 330,53,189 0,636,804 -chrXI 109248 110240 HC_gene_5212_tx_28 1 + 109248 110240 . 2 325,351 0,642 -chrXI 109248 110240 HC_gene_5212_tx_29 1 + 109248 110240 . 2 355,289 0,704 -chrXI 109248 110240 HC_gene_5212_tx_30 1 + 109248 110240 . 2 291,357 0,636 -chrXI 109248 110240 HC_gene_5212_tx_31 1 + 109248 110240 . 2 337,327 0,666 -chrXI 109248 110240 HC_gene_5212_tx_32 1 + 109248 110240 . 2 309,357 0,636 -chrXI 109248 110377 HC_gene_5212_tx_33 1 + 109248 110377 . 2 325,496 0,634 -chrXI 109248 110377 HC_gene_5212_tx_34 7 + 109248 110377 . 2 330,494 0,636 -chrXI 109399 110240 HC_gene_5212_tx_35 99 + 109399 110240 . 2 179,357 0,485 -chrXI 109399 110240 HC_gene_5212_tx_36 4 + 109399 110240 . 1 842 0 -chrXI 109399 110240 HC_gene_5212_tx_37 13 + 109399 110240 . 2 174,359 0,483 -chrXI 109399 110240 HC_gene_5212_tx_38 2 + 109399 110240 . 2 179,350 0,492 -chrXI 109399 110240 HC_gene_5212_tx_39 1 + 109399 110240 . 3 174,78,231 0,483,611 -chrXI 109399 110240 HC_gene_5212_tx_40 1 + 109399 110240 . 2 165,359 0,483 -chrXI 109399 110240 HC_gene_5212_tx_41 1 + 109399 110240 . 2 174,349 0,493 -chrXI 109492 110240 HC_gene_5212_tx_42 1 + 109492 110240 . 2 81,348 0,401 -chrXI 109492 110240 HC_gene_5212_tx_43 1 + 109492 110240 . 2 81,327 0,422 -chrXI 109492 110240 HC_gene_5212_tx_44 206 + 109492 110240 . 2 86,357 0,392 -chrXI 109492 110240 HC_gene_5212_tx_45 23 + 109492 110240 . 2 81,359 0,390 -chrXI 109492 110240 HC_gene_5212_tx_46 1 + 109492 110240 . 2 111,302 0,447 -chrXI 109492 110240 HC_gene_5212_tx_47 5 + 109492 110240 . 2 86,350 0,399 -chrXI 109492 110240 HC_gene_5212_tx_48 4 + 109492 110240 . 2 72,359 0,390 -chrXI 109492 110240 HC_gene_5212_tx_49 2 + 109492 110240 . 2 58,357 0,392 -chrXI 109492 110240 HC_gene_5212_tx_50 6 + 109492 110240 . 1 749 0 -chrXI 109492 110240 HC_gene_5212_tx_51 1 + 109492 110240 . 2 86,345 0,404 -chrXI 109492 110377 HC_gene_5212_tx_52 1 + 109492 110377 . 2 86,494 0,392 -chrXI 109891 110240 HC_gene_5212_tx_53 311 + 109891 110240 . 1 350 0 -chrXI 109891 110240 HC_gene_5212_tx_54 1 + 109891 110240 . 2 176,126 0,224 -chrXI 109891 110377 HC_gene_5212_tx_55 1 + 109891 110377 . 1 487 0 -chrXI 110156 111322 HC_gene_5476_tx_1 1 - 110156 111322 . 1 1167 0 -chrXI 110156 111430 HC_gene_5476_tx_2 1 - 110156 111430 . 1 1275 0 -chrXI 110156 111897 HC_gene_5476_tx_7 1 - 110156 111897 . 1 1742 0 -chrXI 110156 112160 HC_gene_5476_tx_8 1 - 110156 112160 . 1 2005 0 -chrXI 110156 112508 HC_gene_5476_tx_9 4 - 110156 112508 . 1 2353 0 -chrXI 110210 111322 HC_gene_5476_tx_3 3 - 110210 111322 . 1 1113 0 -chrXI 110210 111430 HC_gene_5476_tx_4 1 - 110210 111430 . 1 1221 0 -chrXI 110210 111897 HC_gene_5476_tx_10 1 - 110210 111897 . 1 1688 0 -chrXI 110210 111981 HC_gene_5476_tx_11 3 - 110210 111981 . 1 1772 0 -chrXI 110210 112160 HC_gene_5476_tx_12 3 - 110210 112160 . 1 1951 0 -chrXI 110210 112508 HC_gene_5476_tx_13 8 - 110210 112508 . 1 2299 0 -chrXI 110210 112508 HC_gene_5476_tx_14 1 - 110210 112508 . 2 1703,225 0,2074 -chrXI 110210 112508 HC_gene_5476_tx_15 1 - 110210 112508 . 2 1711,465 0,1834 -chrXI 110306 111678 LC_gene_5213_tx_1 1 + 110306 111678 . 1 1373 0 -chrXI 110328 111322 HC_gene_5476_tx_5 5 - 110328 111322 . 1 995 0 -chrXI 110328 111430 HC_gene_5476_tx_6 7 - 110328 111430 . 1 1103 0 -chrXI 110328 111897 HC_gene_5476_tx_16 1 - 110328 111897 . 1 1570 0 -chrXI 110328 111981 HC_gene_5476_tx_17 4 - 110328 111981 . 1 1654 0 -chrXI 110328 112508 HC_gene_5476_tx_18 23 - 110328 112508 . 1 2181 0 -chrXI 110328 112508 HC_gene_5476_tx_19 1 - 110328 112508 . 2 668,1428 0,753 -chrXI 110328 112508 HC_gene_5476_tx_20 1 - 110328 112508 . 2 1819,306 0,1875 -chrXI 112943 114017 HC_gene_5477_tx_1 23 - 112943 114017 . 1 1075 0 -chrXI 112943 114017 HC_gene_5477_tx_2 1 - 112943 114017 . 2 429,504 0,571 -chrXI 112943 114017 HC_gene_5477_tx_3 1 - 112943 114017 . 2 55,939 0,136 -chrXI 112943 114207 HC_gene_5477_tx_4 10 - 112943 114207 . 1 1265 0 -chrXI 113035 113399 LC_gene_5214_tx_1 1 + 113035 113399 . 1 365 0 -chrXI 115105 115457 HC_gene_5215_tx_1 3 + 115105 115457 . 1 353 0 -chrXI 115105 115462 HC_gene_5215_tx_2 2 + 115105 115462 . 1 358 0 -chrXI 115105 115644 HC_gene_5215_tx_3 11 + 115105 115644 . 1 540 0 -chrXI 115407 116523 HC_gene_5478_tx_1 6 - 115407 116523 . 1 1117 0 -chrXI 115407 117594 HC_gene_5478_tx_2 4 - 115407 117594 . 1 2188 0 -chrXI 115407 117998 HC_gene_5478_tx_3 1 - 115407 117998 . 1 2592 0 -chrXI 115407 118329 HC_gene_5478_tx_4 14 - 115407 118329 . 1 2923 0 -chrXI 115407 118522 HC_gene_5478_tx_5 1 - 115407 118522 . 1 3116 0 -chrXI 118746 120408 HC_gene_5216_tx_1 57 + 118746 120408 . 1 1663 0 -chrXI 118746 120408 HC_gene_5216_tx_2 1 + 118746 120408 . 2 500,973 0,690 -chrXI 118746 120408 HC_gene_5216_tx_3 1 + 118746 120408 . 2 681,890 0,773 -chrXI 119111 120408 HC_gene_5216_tx_4 8 + 119111 120408 . 1 1298 0 -chrXI 119486 120408 HC_gene_5216_tx_5 7 + 119486 120408 . 1 923 0 -chrXI 120289 120682 HC_gene_5479_tx_1 9 - 120289 120682 . 1 394 0 -chrXI 120289 121868 HC_gene_5479_tx_2 2 - 120289 121868 . 1 1580 0 -chrXI 120289 122300 HC_gene_5479_tx_3 19 - 120289 122300 . 1 2012 0 -chrXI 122488 123799 HC_gene_5217_tx_1 1 + 122488 123799 . 1 1312 0 -chrXI 122488 125669 HC_gene_5217_tx_2 5 + 122488 125669 . 1 3182 0 -chrXI 122488 125669 HC_gene_5217_tx_3 1 + 122488 125669 . 2 883,2066 0,1116 -chrXI 122488 125669 HC_gene_5217_tx_4 1 + 122488 125669 . 2 98,2724 0,458 -chrXI 125729 127156 HC_gene_5218_tx_1 180 + 125729 127156 . 1 1428 0 -chrXI 125729 127156 HC_gene_5218_tx_2 1 + 125729 127156 . 2 802,563 0,865 -chrXI 125729 127156 HC_gene_5218_tx_3 1 + 125729 127156 . 2 318,1031 0,397 -chrXI 125729 127156 HC_gene_5218_tx_4 1 + 125729 127156 . 2 795,508 0,920 -chrXI 125729 127156 HC_gene_5218_tx_5 1 + 125729 127156 . 2 199,974 0,454 -chrXI 125729 127156 HC_gene_5218_tx_6 1 + 125729 127156 . 2 795,575 0,853 -chrXI 125729 127156 HC_gene_5218_tx_7 1 + 125729 127156 . 2 71,782 0,646 -chrXI 125729 127156 HC_gene_5218_tx_8 1 + 125729 127156 . 2 132,1108 0,320 -chrXI 125729 127156 HC_gene_5218_tx_9 1 + 125729 127156 . 2 241,944 0,484 -chrXI 125729 127156 HC_gene_5218_tx_10 1 + 125729 127156 . 2 223,1108 0,320 -chrXI 125729 127156 HC_gene_5218_tx_11 1 + 125729 127156 . 2 428,805 0,623 -chrXI 125740 127156 HC_gene_5218_tx_12 1 + 125740 127156 . 2 196,1057 0,360 -chrXI 125772 127156 HC_gene_5218_tx_13 1 + 125772 127156 . 2 164,1057 0,328 -chrXI 125792 127156 HC_gene_5218_tx_14 1 + 125792 127156 . 2 295,773 0,592 -chrXI 125930 127156 HC_gene_5218_tx_15 28 + 125930 127156 . 1 1227 0 -chrXI 126074 127156 HC_gene_5218_tx_16 31 + 126074 127156 . 1 1083 0 -chrXI 126074 127156 HC_gene_5218_tx_17 1 + 126074 127156 . 2 232,727 0,356 -chrXI 126222 127156 HC_gene_5218_tx_18 26 + 126222 127156 . 1 935 0 -chrXI 126626 127156 HC_gene_5218_tx_19 110 + 126626 127156 . 1 531 0 -chrXI 126719 127156 HC_gene_5218_tx_20 19 + 126719 127156 . 1 438 0 -chrXI 127391 130357 HC_gene_5219_tx_1 3 + 127391 130357 . 1 2967 0 -chrXI 127818 130312 HC_gene_5480_tx_1 1 - 127818 130312 . 1 2495 0 -chrXI 130560 131190 HC_gene_5220_tx_1 102 + 130560 131190 . 1 631 0 -chrXI 130715 131190 HC_gene_5220_tx_2 20 + 130715 131190 . 1 476 0 -chrXI 130799 131190 HC_gene_5220_tx_3 15 + 130799 131190 . 1 392 0 -chrXI 131102 133473 HC_gene_5481_tx_1 3 - 131102 133473 . 1 2372 0 -chrXI 131204 133473 HC_gene_5481_tx_2 6 - 131204 133473 . 1 2270 0 -chrXI 133428 133752 MC_gene_5221_tx_1 1 + 133428 133752 . 1 325 0 -chrXI 133560 134129 HC_gene_5482_tx_1 99 - 133560 134129 . 1 570 0 -chrXI 133560 134129 HC_gene_5482_tx_2 1 - 133560 134129 . 2 67,398 0,172 -chrXI 133560 134391 HC_gene_5482_tx_3 1 - 133560 134391 . 1 832 0 -chrXI 133669 133952 MC_gene_5222_tx_1 1 + 133669 133952 . 1 284 0 -chrXI 134288 134707 HC_gene_5483_tx_1 22 - 134288 134707 . 1 420 0 -chrXI 134288 135860 HC_gene_5483_tx_2 23 - 134288 135860 . 1 1573 0 -chrXI 134288 135860 HC_gene_5483_tx_3 1 - 134288 135860 . 2 527,921 0,652 -chrXI 136034 136641 HC_gene_5484_tx_1 2 - 136034 136641 . 1 608 0 -chrXI 136034 137096 HC_gene_5484_tx_2 2 - 136034 137096 . 1 1063 0 -chrXI 136335 137953 HC_gene_5223_tx_1 1 + 136335 137953 . 1 1619 0 -chrXI 137237 137625 HC_gene_5485_tx_1 10 - 137237 137625 . 1 389 0 -chrXI 137268 137953 HC_gene_5223_tx_2 1 + 137268 137953 . 1 686 0 -chrXI 137752 138685 HC_gene_5486_tx_1 7 - 137752 138685 . 1 934 0 -chrXI 137752 140731 HC_gene_5486_tx_2 7 - 137752 140731 . 1 2980 0 -chrXI 137989 139766 MC_gene_5224_tx_1 1 + 137989 139766 . 2 64,1112 0,666 -chrXI 140825 141089 MC_gene_5487_tx_1 1 - 140825 141089 . 1 265 0 -chrXI 141194 141490 MC_gene_5488_tx_1 1 - 141194 141490 . 1 297 0 -chrXI 141532 142245 HC_gene_5489_tx_1 151 - 141532 142245 . 1 714 0 -chrXI 141532 142245 HC_gene_5489_tx_2 1 - 141532 142245 . 2 404,204 0,510 -chrXI 141532 142302 HC_gene_5489_tx_3 4 - 141532 142302 . 1 771 0 -chrXI 141532 142359 HC_gene_5489_tx_4 65 - 141532 142359 . 1 828 0 -chrXI 141532 142416 HC_gene_5489_tx_5 10 - 141532 142416 . 1 885 0 -chrXI 141532 142488 HC_gene_5489_tx_6 54 - 141532 142488 . 1 957 0 -chrXI 141532 142488 HC_gene_5489_tx_7 1 - 141532 142488 . 2 782,102 0,855 -chrXI 141532 142545 HC_gene_5489_tx_8 2 - 141532 142545 . 1 1014 0 -chrXI 141532 142545 HC_gene_5489_tx_9 1 - 141532 142545 . 2 686,81 0,933 -chrXI 141532 142639 HC_gene_5489_tx_10 27 - 141532 142639 . 1 1108 0 -chrXI 141532 142639 HC_gene_5489_tx_11 1 - 141532 142639 . 2 809,175 0,933 -chrXI 141532 142639 HC_gene_5489_tx_12 1 - 141532 142639 . 2 560,445 0,663 -chrXI 141532 142708 HC_gene_5489_tx_13 70 - 141532 142708 . 1 1177 0 -chrXI 141532 142708 HC_gene_5489_tx_14 1 - 141532 142708 . 2 1055,55 0,1122 -chrXI 141532 142708 HC_gene_5489_tx_15 1 - 141532 142708 . 2 698,259 0,918 -chrXI 141532 142895 HC_gene_5489_tx_16 210 - 141532 142895 . 1 1364 0 -chrXI 141532 142895 HC_gene_5489_tx_17 1 - 141532 142895 . 2 1124,132 0,1232 -chrXI 141532 142895 HC_gene_5489_tx_18 1 - 141532 142895 . 2 1052,128 0,1236 -chrXI 141532 142895 HC_gene_5489_tx_19 1 - 141532 142895 . 2 1124,128 0,1236 -chrXI 141532 142895 HC_gene_5489_tx_20 1 - 141532 142895 . 2 1055,69 0,1295 -chrXI 141532 142895 HC_gene_5489_tx_21 1 - 141532 142895 . 2 611,326 0,1038 -chrXI 141532 142895 HC_gene_5489_tx_22 1 - 141532 142895 . 2 686,620 0,744 -chrXI 141532 142895 HC_gene_5489_tx_23 1 - 141532 142895 . 2 1015,292 0,1072 -chrXI 141532 143108 HC_gene_5489_tx_24 7 - 141532 143108 . 1 1577 0 -chrXI 141598 142245 HC_gene_5489_tx_25 13 - 141598 142245 . 1 648 0 -chrXI 141598 142359 HC_gene_5489_tx_26 2 - 141598 142359 . 1 762 0 -chrXI 141598 142488 HC_gene_5489_tx_27 1 - 141598 142488 . 1 891 0 -chrXI 141598 142708 HC_gene_5489_tx_28 3 - 141598 142708 . 1 1111 0 -chrXI 141598 142895 HC_gene_5489_tx_29 24 - 141598 142895 . 1 1298 0 -chrXI 141598 143108 HC_gene_5489_tx_30 3 - 141598 143108 . 1 1511 0 -chrXI 141613 142891 LC_gene_5225_tx_1 1 + 141613 142891 . 1 1279 0 -chrXI 141682 142245 HC_gene_5489_tx_31 24 - 141682 142245 . 1 564 0 -chrXI 141682 142302 HC_gene_5489_tx_32 2 - 141682 142302 . 1 621 0 -chrXI 141682 142359 HC_gene_5489_tx_33 11 - 141682 142359 . 1 678 0 -chrXI 141682 142416 HC_gene_5489_tx_34 3 - 141682 142416 . 1 735 0 -chrXI 141682 142488 HC_gene_5489_tx_35 6 - 141682 142488 . 1 807 0 -chrXI 141682 142639 HC_gene_5489_tx_36 2 - 141682 142639 . 1 958 0 -chrXI 141682 142639 HC_gene_5489_tx_37 1 - 141682 142639 . 2 552,307 0,651 -chrXI 141682 142708 HC_gene_5489_tx_38 9 - 141682 142708 . 1 1027 0 -chrXI 141682 142708 HC_gene_5489_tx_39 1 - 141682 142708 . 2 719,205 0,822 -chrXI 141682 142895 HC_gene_5489_tx_40 27 - 141682 142895 . 1 1214 0 -chrXI 143294 143659 HC_gene_5226_tx_1 1 + 143294 143659 . 1 366 0 -chrXI 143294 143726 HC_gene_5226_tx_2 17 + 143294 143726 . 1 433 0 -chrXI 143590 143954 HC_gene_5490_tx_1 1 - 143590 143954 . 1 365 0 -chrXI 143607 143726 HC_gene_5226_tx_3 1 + 143607 143726 . 1 120 0 -chrXI 143607 144436 HC_gene_5226_tx_4 5 + 143607 144436 . 1 830 0 -chrXI 143896 144436 HC_gene_5226_tx_5 2 + 143896 144436 . 1 541 0 -chrXI 144100 144914 LC_gene_5491_tx_1 1 - 144100 144914 . 1 815 0 -chrXI 145572 146131 MC_gene_5492_tx_1 1 - 145572 146131 . 1 560 0 -chrXI 145746 146892 MC_gene_5227_tx_1 1 + 145746 146892 . 1 1147 0 -chrXI 147486 148872 HC_gene_5493_tx_1 6 - 147486 148872 . 1 1387 0 -chrXI 147486 148872 HC_gene_5493_tx_2 1 - 147486 148872 . 2 481,756 0,631 -chrXI 149031 150554 HC_gene_5494_tx_1 2 - 149031 150554 . 1 1524 0 -chrXI 149031 150756 HC_gene_5494_tx_2 1 - 149031 150756 . 1 1726 0 -chrXI 149031 150931 HC_gene_5494_tx_3 6 - 149031 150931 . 1 1901 0 -chrXI 149031 152552 HC_gene_5494_tx_4 2 - 149031 152552 . 1 3522 0 -chrXI 151169 151944 HC_gene_5228_tx_1 1 + 151169 151944 . 1 776 0 -chrXI 151169 152641 HC_gene_5228_tx_2 1 + 151169 152641 . 1 1473 0 -chrXI 151169 152936 HC_gene_5228_tx_3 4 + 151169 152936 . 1 1768 0 -chrXI 151427 152936 HC_gene_5228_tx_4 1 + 151427 152936 . 1 1510 0 -chrXI 151499 152641 HC_gene_5228_tx_6 1 + 151499 152641 . 1 1143 0 -chrXI 151604 152936 HC_gene_5228_tx_5 1 + 151604 152936 . 1 1333 0 -chrXI 152803 153008 HC_gene_5495_tx_1 2 - 152803 153008 . 1 206 0 -chrXI 153250 153776 HC_gene_5229_tx_1 19 + 153250 153776 . 1 527 0 -chrXI 153250 153777 HC_gene_5229_tx_2 1 + 153250 153777 . 1 528 0 -chrXI 153250 153779 HC_gene_5229_tx_3 10 + 153250 153779 . 1 530 0 -chrXI 153250 153780 HC_gene_5229_tx_4 4 + 153250 153780 . 1 531 0 -chrXI 153250 153781 HC_gene_5229_tx_5 3 + 153250 153781 . 1 532 0 -chrXI 153250 153782 HC_gene_5229_tx_6 8 + 153250 153782 . 1 533 0 -chrXI 153250 153783 HC_gene_5229_tx_7 2 + 153250 153783 . 1 534 0 -chrXI 153250 153784 HC_gene_5229_tx_8 42 + 153250 153784 . 1 535 0 -chrXI 153250 153786 HC_gene_5229_tx_9 2 + 153250 153786 . 1 537 0 -chrXI 153250 153788 HC_gene_5229_tx_10 3 + 153250 153788 . 1 539 0 -chrXI 153250 153790 HC_gene_5229_tx_11 3 + 153250 153790 . 1 541 0 -chrXI 153250 153791 HC_gene_5229_tx_12 1 + 153250 153791 . 1 542 0 -chrXI 153250 153793 HC_gene_5229_tx_13 6 + 153250 153793 . 1 544 0 -chrXI 153250 153797 HC_gene_5229_tx_14 1 + 153250 153797 . 1 548 0 -chrXI 153250 153798 HC_gene_5229_tx_15 3 + 153250 153798 . 1 549 0 -chrXI 153250 153801 HC_gene_5229_tx_16 1 + 153250 153801 . 1 552 0 -chrXI 153250 153802 HC_gene_5229_tx_17 2 + 153250 153802 . 1 553 0 -chrXI 153250 153804 HC_gene_5229_tx_18 1 + 153250 153804 . 1 555 0 -chrXI 153250 153807 HC_gene_5229_tx_19 2 + 153250 153807 . 1 558 0 -chrXI 153250 153809 HC_gene_5229_tx_20 1 + 153250 153809 . 1 560 0 -chrXI 153250 153814 HC_gene_5229_tx_21 1 + 153250 153814 . 1 565 0 -chrXI 153250 153815 HC_gene_5229_tx_22 2 + 153250 153815 . 1 566 0 -chrXI 153250 153819 HC_gene_5229_tx_23 2 + 153250 153819 . 1 570 0 -chrXI 153250 153883 HC_gene_5229_tx_24 3 + 153250 153883 . 1 634 0 -chrXI 153250 154144 HC_gene_5229_tx_25 1 + 153250 154144 . 1 895 0 -chrXI 153250 154145 HC_gene_5229_tx_26 1 + 153250 154145 . 1 896 0 -chrXI 153250 154161 HC_gene_5229_tx_27 1 + 153250 154161 . 1 912 0 -chrXI 153250 154171 HC_gene_5229_tx_28 1 + 153250 154171 . 1 922 0 -chrXI 153250 154178 HC_gene_5229_tx_29 1 + 153250 154178 . 1 929 0 -chrXI 153250 154187 HC_gene_5229_tx_30 1 + 153250 154187 . 1 938 0 -chrXI 153250 154469 HC_gene_5229_tx_31 5 + 153250 154469 . 1 1220 0 -chrXI 153250 154892 HC_gene_5229_tx_32 2 + 153250 154892 . 1 1643 0 -chrXI 153467 153776 HC_gene_5229_tx_33 4 + 153467 153776 . 1 310 0 -chrXI 153467 153778 HC_gene_5229_tx_34 2 + 153467 153778 . 1 312 0 -chrXI 153467 153779 HC_gene_5229_tx_35 2 + 153467 153779 . 1 313 0 -chrXI 153467 153780 HC_gene_5229_tx_36 2 + 153467 153780 . 1 314 0 -chrXI 153467 153781 HC_gene_5229_tx_37 1 + 153467 153781 . 1 315 0 -chrXI 153467 153782 HC_gene_5229_tx_38 2 + 153467 153782 . 1 316 0 -chrXI 153467 153784 HC_gene_5229_tx_39 6 + 153467 153784 . 1 318 0 -chrXI 153467 153788 HC_gene_5229_tx_40 3 + 153467 153788 . 1 322 0 -chrXI 153467 153789 HC_gene_5229_tx_41 1 + 153467 153789 . 1 323 0 -chrXI 153467 153793 HC_gene_5229_tx_42 1 + 153467 153793 . 1 327 0 -chrXI 153467 153883 HC_gene_5229_tx_43 1 + 153467 153883 . 1 417 0 -chrXI 153467 154187 HC_gene_5229_tx_44 1 + 153467 154187 . 1 721 0 -chrXI 153601 154141 HC_gene_5496_tx_1 1 - 153601 154141 . 1 541 0 -chrXI 153601 154492 HC_gene_5496_tx_2 4 - 153601 154492 . 1 892 0 -chrXI 153712 154141 HC_gene_5496_tx_4 8 - 153712 154141 . 1 430 0 -chrXI 153712 154492 HC_gene_5496_tx_3 33 - 153712 154492 . 1 781 0 -chrXI 153712 154790 HC_gene_5496_tx_5 2 - 153712 154790 . 1 1079 0 -chrXI 154586 158388 HC_gene_5230_tx_1 1 + 154586 158388 . 2 640,2756 0,1047 -chrXI 154586 158388 HC_gene_5230_tx_2 1 + 154586 158388 . 2 686,2734 0,1069 -chrXI 154953 158388 HC_gene_5230_tx_3 2 + 154953 158388 . 2 319,2734 0,702 -chrXI 154953 158388 HC_gene_5230_tx_4 1 + 154953 158388 . 2 314,2756 0,680 -chrXI 154953 158469 HC_gene_5230_tx_5 1 + 154953 158469 . 2 319,2815 0,702 -chrXI 155124 158388 HC_gene_5230_tx_6 1 + 155124 158388 . 2 148,2734 0,531 -chrXI 155246 155492 MC_gene_5497_tx_1 1 - 155246 155492 . 1 247 0 -chrXI 155543 158388 HC_gene_5230_tx_7 16 + 155543 158388 . 1 2846 0 -chrXI 155543 158388 HC_gene_5230_tx_8 1 + 155543 158388 . 3 684,359,845 0,1017,2001 -chrXI 155543 158388 HC_gene_5230_tx_9 1 + 155543 158388 . 2 1014,1473 0,1373 -chrXI 156010 158388 HC_gene_5230_tx_10 3 + 156010 158388 . 1 2379 0 -chrXI 156010 158388 HC_gene_5230_tx_11 1 + 156010 158388 . 2 1290,995 0,1384 -chrXI 156076 158388 HC_gene_5230_tx_12 4 + 156076 158388 . 1 2313 0 -chrXI 156470 158388 HC_gene_5230_tx_13 4 + 156470 158388 . 1 1919 0 -chrXI 157197 158311 MC_gene_5498_tx_1 1 - 157197 158311 . 1 1115 0 -chrXI 157319 158388 HC_gene_5230_tx_14 11 + 157319 158388 . 1 1070 0 -chrXI 157826 158203 MC_gene_5498_tx_2 1 - 157826 158203 . 1 378 0 -chrXI 158594 159335 HC_gene_5231_tx_1 7 + 158594 159335 . 1 742 0 -chrXI 158594 159444 HC_gene_5231_tx_2 132 + 158594 159444 . 1 851 0 -chrXI 158594 159444 HC_gene_5231_tx_3 81 + 158594 159444 . 2 22,478 0,373 -chrXI 158955 159335 HC_gene_5231_tx_4 75 + 158955 159335 . 1 381 0 -chrXI 158955 159444 HC_gene_5231_tx_5 1828 + 158955 159444 . 1 490 0 -chrXI 159044 159444 HC_gene_5231_tx_6 192 + 159044 159444 . 1 401 0 -chrXI 159392 161341 HC_gene_5499_tx_1 21 - 159392 161341 . 1 1950 0 -chrXI 159392 161341 HC_gene_5499_tx_2 1 - 159392 161341 . 2 653,1233 0,717 -chrXI 159392 161341 HC_gene_5499_tx_3 1 - 159392 161341 . 2 1295,602 0,1348 -chrXI 159392 161341 HC_gene_5499_tx_4 1 - 159392 161341 . 2 1228,612 0,1338 -chrXI 161520 162410 HC_gene_5232_tx_1 115 + 161520 162410 . 1 891 0 -chrXI 162306 162549 MC_gene_5500_tx_1 1 - 162306 162549 . 1 244 0 -chrXI 162731 163134 MC_gene_5233_tx_1 1 + 162731 163134 . 1 404 0 -chrXI 163010 163386 HC_gene_5501_tx_1 3 - 163010 163386 . 1 377 0 -chrXI 163509 163866 HC_gene_5502_tx_1 1028 - 163509 163866 . 1 358 0 -chrXI 163509 163994 HC_gene_5502_tx_2 1146 - 163509 163994 . 1 486 0 -chrXI 163509 164088 HC_gene_5502_tx_3 956 - 163509 164088 . 1 580 0 -chrXI 163509 164409 HC_gene_5502_tx_4 7613 - 163509 164409 . 1 901 0 -chrXI 164166 164910 MC_gene_5234_tx_1 1 + 164166 164910 . 1 745 0 -chrXI 164811 165341 HC_gene_5503_tx_1 6 - 164811 165341 . 1 531 0 -chrXI 164811 165442 HC_gene_5503_tx_2 2 - 164811 165442 . 1 632 0 -chrXI 164811 165497 HC_gene_5503_tx_3 3 - 164811 165497 . 1 687 0 -chrXI 164811 165570 HC_gene_5503_tx_4 3 - 164811 165570 . 1 760 0 -chrXI 164811 165752 HC_gene_5503_tx_5 10 - 164811 165752 . 1 942 0 -chrXI 164811 165752 HC_gene_5503_tx_6 1 - 164811 165752 . 2 239,636 0,306 -chrXI 164811 165943 HC_gene_5503_tx_7 41 - 164811 165943 . 1 1133 0 -chrXI 164811 165943 HC_gene_5503_tx_8 1 - 164811 165943 . 2 469,541 0,592 -chrXI 164931 166047 HC_gene_5235_tx_1 2 + 164931 166047 . 1 1117 0 -chrXI 165571 166047 HC_gene_5235_tx_2 1 + 165571 166047 . 1 477 0 -chrXI 165919 166207 HC_gene_5504_tx_1 2 - 165919 166207 . 1 289 0 -chrXI 165919 166238 HC_gene_5504_tx_2 1 - 165919 166238 . 1 320 0 -chrXI 165919 166250 HC_gene_5504_tx_3 11 - 165919 166250 . 1 332 0 -chrXI 166313 167500 HC_gene_5236_tx_1 1 + 166313 167500 . 2 87,1013 0,175 -chrXI 166313 167574 HC_gene_5236_tx_2 1 + 166313 167574 . 1 1262 0 -chrXI 166485 167500 HC_gene_5236_tx_3 25 + 166485 167500 . 1 1016 0 -chrXI 166485 167574 HC_gene_5236_tx_4 212 + 166485 167574 . 1 1090 0 -chrXI 166485 167574 HC_gene_5236_tx_5 1 + 166485 167574 . 2 953,70 0,1020 -chrXI 166485 167574 HC_gene_5236_tx_6 1 + 166485 167574 . 2 968,52 0,1038 -chrXI 166730 167500 HC_gene_5236_tx_7 1 + 166730 167500 . 1 771 0 -chrXI 166730 167574 HC_gene_5236_tx_8 18 + 166730 167574 . 1 845 0 -chrXI 166925 167500 HC_gene_5236_tx_9 2 + 166925 167500 . 1 576 0 -chrXI 166925 167574 HC_gene_5236_tx_10 19 + 166925 167574 . 1 650 0 -chrXI 167045 167500 HC_gene_5236_tx_11 2 + 167045 167500 . 1 456 0 -chrXI 167045 167574 HC_gene_5236_tx_12 57 + 167045 167574 . 1 530 0 -chrXI 167174 167500 HC_gene_5236_tx_13 2 + 167174 167500 . 1 327 0 -chrXI 167174 167574 HC_gene_5236_tx_14 18 + 167174 167574 . 1 401 0 -chrXI 167485 168854 HC_gene_5505_tx_1 17 - 167485 168854 . 1 1370 0 -chrXI 168973 170927 HC_gene_5506_tx_1 4 - 168973 170927 . 1 1955 0 -chrXI 168973 171140 HC_gene_5506_tx_2 4 - 168973 171140 . 1 2168 0 -chrXI 168973 171279 HC_gene_5506_tx_3 34 - 168973 171279 . 1 2307 0 -chrXI 168973 171279 HC_gene_5506_tx_4 1 - 168973 171279 . 2 1040,1189 0,1118 -chrXI 168973 171279 HC_gene_5506_tx_5 1 - 168973 171279 . 2 1015,126 0,2181 -chrXI 168973 171279 HC_gene_5506_tx_6 1 - 168973 171279 . 2 963,1273 0,1034 -chrXI 168973 171279 HC_gene_5506_tx_7 1 - 168973 171279 . 2 481,1090 0,1217 -chrXI 168973 171279 HC_gene_5506_tx_8 1 - 168973 171279 . 2 288,1961 0,346 -chrXI 168973 171279 HC_gene_5506_tx_9 1 - 168973 171279 . 2 1687,374 0,1933 -chrXI 168973 171279 HC_gene_5506_tx_10 1 - 168973 171279 . 2 443,1773 0,534 -chrXI 168973 171531 HC_gene_5506_tx_11 5 - 168973 171531 . 1 2559 0 -chrXI 169059 169728 LC_gene_5237_tx_1 1 + 169059 169728 . 1 670 0 -chrXI 171627 173948 HC_gene_5238_tx_1 2 + 171627 173948 . 1 2322 0 -chrXI 171733 173251 LC_gene_5507_tx_1 1 - 171733 173251 . 1 1519 0 -chrXI 171763 173948 HC_gene_5238_tx_2 31 + 171763 173948 . 1 2186 0 -chrXI 171763 173948 HC_gene_5238_tx_3 1 + 171763 173948 . 2 1273,792 0,1394 -chrXI 171763 173948 HC_gene_5238_tx_4 1 + 171763 173948 . 2 1132,966 0,1220 -chrXI 171763 173948 HC_gene_5238_tx_5 1 + 171763 173948 . 2 937,1177 0,1009 -chrXI 171763 173948 HC_gene_5238_tx_6 1 + 171763 173948 . 2 1227,899 0,1287 -chrXI 171988 173948 HC_gene_5238_tx_7 5 + 171988 173948 . 1 1961 0 -chrXI 172136 173948 HC_gene_5238_tx_8 6 + 172136 173948 . 1 1813 0 -chrXI 172136 173948 HC_gene_5238_tx_9 1 + 172136 173948 . 2 396,1353 0,460 -chrXI 174189 175681 HC_gene_5239_tx_1 63 + 174189 175681 . 1 1493 0 -chrXI 174189 175681 HC_gene_5239_tx_2 1 + 174189 175681 . 2 883,563 0,930 -chrXI 174189 175681 HC_gene_5239_tx_3 1 + 174189 175681 . 2 808,533 0,960 -chrXI 174189 175768 HC_gene_5239_tx_4 113 + 174189 175768 . 1 1580 0 -chrXI 174189 175768 HC_gene_5239_tx_5 1 + 174189 175768 . 2 73,1003 0,577 -chrXI 174189 175768 HC_gene_5239_tx_6 1 + 174189 175768 . 2 853,620 0,960 -chrXI 174189 175768 HC_gene_5239_tx_7 1 + 174189 175768 . 2 814,657 0,923 -chrXI 174189 175768 HC_gene_5239_tx_8 1 + 174189 175768 . 2 502,1023 0,557 -chrXI 174189 175768 HC_gene_5239_tx_9 1 + 174189 175768 . 2 861,681 0,899 -chrXI 174189 176539 HC_gene_5239_tx_13 1 + 174189 176539 . 1 2351 0 -chrXI 174436 175681 HC_gene_5239_tx_10 20 + 174436 175681 . 1 1246 0 -chrXI 174436 175768 HC_gene_5239_tx_11 31 + 174436 175768 . 1 1333 0 -chrXI 174436 175768 HC_gene_5239_tx_12 1 + 174436 175768 . 2 63,987 0,346 -chrXI 174730 175681 HC_gene_5239_tx_14 8 + 174730 175681 . 1 952 0 -chrXI 174730 175768 HC_gene_5239_tx_15 23 + 174730 175768 . 1 1039 0 -chrXI 174730 175768 HC_gene_5239_tx_16 1 + 174730 175768 . 2 265,456 0,583 -chrXI 175236 175681 HC_gene_5239_tx_17 9 + 175236 175681 . 1 446 0 -chrXI 175236 175768 HC_gene_5239_tx_18 25 + 175236 175768 . 1 533 0 -chrXI 175610 176126 HC_gene_5508_tx_1 1 - 175610 176126 . 1 517 0 -chrXI 175610 176494 HC_gene_5508_tx_2 3 - 175610 176494 . 1 885 0 -chrXI 175715 176126 HC_gene_5508_tx_4 11 - 175715 176126 . 1 412 0 -chrXI 175715 176494 HC_gene_5508_tx_3 45 - 175715 176494 . 1 780 0 -chrXI 176726 178310 HC_gene_5240_tx_1 1 + 176726 178310 . 2 253,1226 0,359 -chrXI 176726 178310 HC_gene_5240_tx_2 29 + 176726 178310 . 1 1585 0 -chrXI 176726 178310 HC_gene_5240_tx_3 1 + 176726 178310 . 2 932,579 0,1006 -chrXI 176726 178310 HC_gene_5240_tx_4 1 + 176726 178310 . 2 616,860 0,725 -chrXI 176726 178310 HC_gene_5240_tx_5 1 + 176726 178310 . 2 217,1206 0,379 -chrXI 176726 178310 HC_gene_5240_tx_6 1 + 176726 178310 . 2 122,1342 0,243 -chrXI 176726 178310 HC_gene_5240_tx_7 1 + 176726 178310 . 2 578,881 0,704 -chrXI 176726 178310 HC_gene_5240_tx_8 1 + 176726 178310 . 2 100,1370 0,215 -chrXI 176726 178543 HC_gene_5240_tx_9 7 + 176726 178543 . 1 1818 0 -chrXI 176726 179317 HC_gene_5240_tx_15 3 + 176726 179317 . 1 2592 0 -chrXI 176740 178310 HC_gene_5240_tx_10 1 + 176740 178310 . 2 840,644 0,927 -chrXI 176983 178310 HC_gene_5240_tx_11 3 + 176983 178310 . 1 1328 0 -chrXI 176983 178543 HC_gene_5240_tx_12 1 + 176983 178543 . 1 1561 0 -chrXI 177206 178310 HC_gene_5240_tx_13 9 + 177206 178310 . 1 1105 0 -chrXI 177206 178400 HC_gene_5240_tx_14 1 + 177206 178400 . 1 1195 0 -chrXI 177567 178310 HC_gene_5240_tx_16 3 + 177567 178310 . 1 744 0 -chrXI 177567 178543 HC_gene_5240_tx_17 1 + 177567 178543 . 1 977 0 -chrXI 177913 178310 HC_gene_5240_tx_18 8 + 177913 178310 . 1 398 0 -chrXI 177913 178543 HC_gene_5240_tx_19 1 + 177913 178543 . 1 631 0 -chrXI 178454 179317 HC_gene_5240_tx_20 166 + 178454 179317 . 1 864 0 -chrXI 178454 179317 HC_gene_5240_tx_21 1 + 178454 179317 . 2 558,261 0,603 -chrXI 178771 179317 HC_gene_5240_tx_22 20 + 178771 179317 . 1 547 0 -chrXI 178870 179317 HC_gene_5240_tx_23 20 + 178870 179317 . 1 448 0 -chrXI 179193 179446 HC_gene_5509_tx_1 12 - 179193 179446 . 1 254 0 -chrXI 179639 180367 HC_gene_5241_tx_1 226 + 179639 180367 . 1 729 0 -chrXI 180528 182512 HC_gene_5242_tx_1 1 + 180528 182512 . 2 225,1547 0,438 -chrXI 180528 182512 HC_gene_5242_tx_2 2 + 180528 182512 . 1 1985 0 -chrXI 180528 182572 HC_gene_5242_tx_3 32 + 180528 182572 . 1 2045 0 -chrXI 180528 182572 HC_gene_5242_tx_4 1 + 180528 182572 . 2 1015,968 0,1077 -chrXI 180681 182572 HC_gene_5242_tx_5 4 + 180681 182572 . 1 1892 0 -chrXI 181983 182512 HC_gene_5242_tx_6 2 + 181983 182512 . 1 530 0 -chrXI 181983 182572 HC_gene_5242_tx_7 5 + 181983 182572 . 1 590 0 -chrXI 182780 184541 HC_gene_5243_tx_1 6 + 182780 184541 . 1 1762 0 -chrXI 182780 184600 HC_gene_5243_tx_2 16 + 182780 184600 . 1 1821 0 -chrXI 182780 184600 HC_gene_5243_tx_3 1 + 182780 184600 . 2 44,1221 0,600 -chrXI 182925 184541 HC_gene_5243_tx_4 2 + 182925 184541 . 1 1617 0 -chrXI 182925 184600 HC_gene_5243_tx_5 4 + 182925 184600 . 1 1676 0 -chrXI 184565 185034 HC_gene_5510_tx_1 125 - 184565 185034 . 1 470 0 -chrXI 184805 185311 MC_gene_5244_tx_1 1 + 184805 185311 . 1 507 0 -chrXI 185211 185518 HC_gene_5511_tx_1 10 - 185211 185518 . 1 308 0 -chrXI 185211 185586 HC_gene_5511_tx_2 25 - 185211 185586 . 1 376 0 -chrXI 185211 185784 HC_gene_5511_tx_3 156 - 185211 185784 . 1 574 0 -chrXI 185211 185936 HC_gene_5511_tx_4 2 - 185211 185936 . 1 726 0 -chrXI 185896 186491 HC_gene_5245_tx_1 148 + 185896 186491 . 1 596 0 -chrXI 186324 188771 HC_gene_5512_tx_1 8 - 186324 188771 . 1 2448 0 -chrXI 186385 188771 HC_gene_5512_tx_2 1 - 186385 188771 . 2 884,1390 0,997 -chrXI 186385 188771 HC_gene_5512_tx_3 15 - 186385 188771 . 1 2387 0 -chrXI 186385 188771 HC_gene_5512_tx_4 1 - 186385 188771 . 2 981,1293 0,1094 -chrXI 186385 188771 HC_gene_5512_tx_5 1 - 186385 188771 . 2 986,1347 0,1040 -chrXI 188862 191495 HC_gene_5513_tx_1 1 - 188862 191495 . 2 1802,774 0,1860 -chrXI 188862 191495 HC_gene_5513_tx_2 2 - 188862 191495 . 1 2634 0 -chrXI 188981 190669 MC_gene_5246_tx_1 1 + 188981 190669 . 1 1689 0 -chrXI 191606 192992 HC_gene_5514_tx_1 1 - 191606 192992 . 1 1387 0 -chrXI 191606 193084 HC_gene_5514_tx_2 5 - 191606 193084 . 1 1479 0 -chrXI 191696 192652 LC_gene_5247_tx_1 1 + 191696 192652 . 1 957 0 -chrXI 192909 193178 MC_gene_5248_tx_1 1 + 192909 193178 . 1 270 0 -chrXI 193308 194940 HC_gene_5515_tx_1 1 - 193308 194940 . 2 782,784 0,849 -chrXI 193308 194940 HC_gene_5515_tx_2 2 - 193308 194940 . 1 1633 0 -chrXI 193379 194940 HC_gene_5515_tx_3 1 - 193379 194940 . 1 1562 0 -chrXI 193383 194940 HC_gene_5515_tx_4 1 - 193383 194940 . 1 1558 0 -chrXI 193408 194940 HC_gene_5515_tx_5 1 - 193408 194940 . 1 1533 0 -chrXI 193419 194940 HC_gene_5515_tx_6 1 - 193419 194940 . 1 1522 0 -chrXI 193427 194940 HC_gene_5515_tx_7 1 - 193427 194940 . 1 1514 0 -chrXI 195160 195762 HC_gene_5516_tx_1 5 - 195160 195762 . 1 603 0 -chrXI 195160 195965 HC_gene_5516_tx_2 4 - 195160 195965 . 1 806 0 -chrXI 195160 196079 HC_gene_5516_tx_3 79 - 195160 196079 . 1 920 0 -chrXI 195209 195718 HC_gene_5249_tx_1 13 + 195209 195718 . 1 510 0 -chrXI 195209 196367 HC_gene_5249_tx_2 2 + 195209 196367 . 1 1159 0 -chrXI 196288 196734 HC_gene_5517_tx_1 5 - 196288 196734 . 1 447 0 -chrXI 196288 196899 HC_gene_5517_tx_2 6 - 196288 196899 . 1 612 0 -chrXI 196288 197069 HC_gene_5517_tx_3 5 - 196288 197069 . 1 782 0 -chrXI 196288 197239 HC_gene_5517_tx_4 4 - 196288 197239 . 1 952 0 -chrXI 196288 197526 HC_gene_5517_tx_5 2 - 196288 197526 . 1 1239 0 -chrXI 196288 197717 HC_gene_5517_tx_6 1 - 196288 197717 . 1 1430 0 -chrXI 196288 198151 HC_gene_5517_tx_7 1 - 196288 198151 . 1 1864 0 -chrXI 196380 197650 LC_gene_5250_tx_1 1 + 196380 197650 . 2 391,770 0,501 -chrXI 198861 199828 LC_gene_5518_tx_1 1 - 198861 199828 . 1 968 0 -chrXI 200442 200718 HC_gene_5251_tx_1 6 + 200442 200718 . 1 277 0 -chrXI 200721 201261 HC_gene_5519_tx_1 15 - 200721 201261 . 1 541 0 -chrXI 200721 201512 HC_gene_5519_tx_2 13 - 200721 201512 . 1 792 0 -chrXI 200721 201759 HC_gene_5519_tx_3 1 - 200721 201759 . 1 1039 0 -chrXI 200721 201772 HC_gene_5519_tx_4 1 - 200721 201772 . 1 1052 0 -chrXI 200721 201775 HC_gene_5519_tx_5 1 - 200721 201775 . 1 1055 0 -chrXI 200721 201780 HC_gene_5519_tx_6 1 - 200721 201780 . 1 1060 0 -chrXI 200721 201787 HC_gene_5519_tx_7 1 - 200721 201787 . 1 1067 0 -chrXI 200721 201788 HC_gene_5519_tx_8 1 - 200721 201788 . 1 1068 0 -chrXI 200721 201789 HC_gene_5519_tx_9 1 - 200721 201789 . 1 1069 0 -chrXI 200721 201803 HC_gene_5519_tx_10 55 - 200721 201803 . 1 1083 0 -chrXI 200721 201833 HC_gene_5519_tx_11 1 - 200721 201833 . 1 1113 0 -chrXI 200721 201931 HC_gene_5519_tx_12 1 - 200721 201931 . 1 1211 0 -chrXI 202046 202924 MC_gene_5252_tx_1 1 + 202046 202924 . 1 879 0 -chrXI 202194 202896 MC_gene_5252_tx_2 1 + 202194 202896 . 1 703 0 -chrXI 202342 202747 MC_gene_5520_tx_1 1 - 202342 202747 . 1 406 0 -chrXI 202917 203083 MC_gene_5253_tx_1 1 + 202917 203083 . 1 167 0 -chrXI 203500 205288 HC_gene_5254_tx_1 4 + 203500 205288 . 1 1789 0 -chrXI 203500 205397 HC_gene_5254_tx_2 54 + 203500 205397 . 1 1898 0 -chrXI 203500 205397 HC_gene_5254_tx_3 1 + 203500 205397 . 2 490,1275 0,623 -chrXI 203526 205397 HC_gene_5254_tx_4 1 + 203526 205397 . 2 682,830 0,1042 -chrXI 203814 205288 HC_gene_5254_tx_5 2 + 203814 205288 . 1 1475 0 -chrXI 203814 205397 HC_gene_5254_tx_6 9 + 203814 205397 . 1 1584 0 -chrXI 203814 205397 HC_gene_5254_tx_7 1 + 203814 205397 . 2 607,812 0,772 -chrXI 203977 204981 HC_gene_5521_tx_1 1 - 203977 204981 . 1 1005 0 -chrXI 204199 205288 HC_gene_5254_tx_8 1 + 204199 205288 . 1 1090 0 -chrXI 204199 205397 HC_gene_5254_tx_9 6 + 204199 205397 . 1 1199 0 -chrXI 204324 205397 HC_gene_5254_tx_10 13 + 204324 205397 . 1 1074 0 -chrXI 204595 205397 HC_gene_5254_tx_11 9 + 204595 205397 . 1 803 0 -chrXI 204879 205288 HC_gene_5254_tx_12 1 + 204879 205288 . 1 410 0 -chrXI 204879 205397 HC_gene_5254_tx_13 19 + 204879 205397 . 1 519 0 -chrXI 205498 207823 HC_gene_5255_tx_1 29 + 205498 207823 . 1 2326 0 -chrXI 205498 207823 HC_gene_5255_tx_2 1 + 205498 207823 . 2 1322,934 0,1392 -chrXI 205648 207823 HC_gene_5255_tx_3 1 + 205648 207823 . 1 2176 0 -chrXI 205775 207823 HC_gene_5255_tx_4 4 + 205775 207823 . 1 2049 0 -chrXI 205829 207823 HC_gene_5255_tx_5 5 + 205829 207823 . 1 1995 0 -chrXI 205829 207823 HC_gene_5255_tx_6 1 + 205829 207823 . 2 908,742 0,1253 -chrXI 206772 207823 HC_gene_5255_tx_7 7 + 206772 207823 . 1 1052 0 -chrXI 207029 207823 HC_gene_5255_tx_8 12 + 207029 207823 . 1 795 0 -chrXI 207193 207815 LC_gene_5522_tx_1 1 - 207193 207815 . 1 623 0 -chrXI 208163 208691 HC_gene_5256_tx_1 1 + 208163 208691 . 1 529 0 -chrXI 208163 208694 HC_gene_5256_tx_2 1 + 208163 208694 . 1 532 0 -chrXI 208163 208866 HC_gene_5256_tx_3 25 + 208163 208866 . 1 704 0 -chrXI 208163 208983 HC_gene_5256_tx_4 14 + 208163 208983 . 1 821 0 -chrXI 209316 210304 HC_gene_5257_tx_1 8 + 209316 210304 . 1 989 0 -chrXI 210230 211515 LC_gene_5523_tx_1 1 - 210230 211515 . 1 1286 0 -chrXI 210468 212512 HC_gene_5258_tx_1 14 + 210468 212512 . 1 2045 0 -chrXI 210468 212512 HC_gene_5258_tx_2 1 + 210468 212512 . 2 1606,363 0,1682 -chrXI 212039 212512 HC_gene_5258_tx_3 3 + 212039 212512 . 1 474 0 -chrXI 212323 213033 HC_gene_5524_tx_1 3 - 212323 213033 . 1 711 0 -chrXI 212411 212703 HC_gene_5524_tx_3 20 - 212411 212703 . 1 293 0 -chrXI 212411 212775 HC_gene_5524_tx_4 51 - 212411 212775 . 1 365 0 -chrXI 212411 213033 HC_gene_5524_tx_2 329 - 212411 213033 . 1 623 0 -chrXI 212657 213700 LC_gene_5259_tx_1 1 + 212657 213700 . 1 1044 0 -chrXI 213926 216821 HC_gene_5260_tx_1 3 + 213926 216821 . 1 2896 0 -chrXI 217126 217667 LC_gene_5525_tx_1 1 - 217126 217667 . 1 542 0 -chrXI 217266 218378 HC_gene_5261_tx_1 8 + 217266 218378 . 1 1113 0 -chrXI 217266 218449 HC_gene_5261_tx_2 72 + 217266 218449 . 1 1184 0 -chrXI 217266 218449 HC_gene_5261_tx_3 1 + 217266 218449 . 2 267,780 0,404 -chrXI 217266 218449 HC_gene_5261_tx_4 1 + 217266 218449 . 2 901,172 0,1012 -chrXI 217600 218378 HC_gene_5261_tx_5 1 + 217600 218378 . 1 779 0 -chrXI 217600 218449 HC_gene_5261_tx_6 8 + 217600 218449 . 1 850 0 -chrXI 217902 218378 HC_gene_5261_tx_7 1 + 217902 218378 . 1 477 0 -chrXI 217902 218449 HC_gene_5261_tx_8 7 + 217902 218449 . 1 548 0 -chrXI 218421 218980 HC_gene_5526_tx_1 11 - 218421 218980 . 1 560 0 -chrXI 218421 219053 HC_gene_5526_tx_2 8 - 218421 219053 . 1 633 0 -chrXI 218421 219272 HC_gene_5526_tx_3 77 - 218421 219272 . 1 852 0 -chrXI 219402 219650 LC_gene_5527_tx_1 1 - 219402 219650 . 1 249 0 -chrXI 219419 219828 MC_gene_5262_tx_1 1 + 219419 219828 . 1 410 0 -chrXI 220270 221118 HC_gene_5263_tx_1 1 + 220270 221118 . 1 849 0 -chrXI 220270 221119 HC_gene_5263_tx_2 2 + 220270 221119 . 1 850 0 -chrXI 220270 221120 HC_gene_5263_tx_3 3 + 220270 221120 . 1 851 0 -chrXI 220270 221121 HC_gene_5263_tx_4 33 + 220270 221121 . 1 852 0 -chrXI 220270 221122 HC_gene_5263_tx_5 7 + 220270 221122 . 1 853 0 -chrXI 220270 221122 HC_gene_5263_tx_6 1 + 220270 221122 . 2 526,267 0,586 -chrXI 220270 221123 HC_gene_5263_tx_7 1 + 220270 221123 . 1 854 0 -chrXI 220270 221124 HC_gene_5263_tx_8 11 + 220270 221124 . 1 855 0 -chrXI 220270 221125 HC_gene_5263_tx_9 1 + 220270 221125 . 2 438,225 0,631 -chrXI 220270 221125 HC_gene_5263_tx_10 152 + 220270 221125 . 1 856 0 -chrXI 220270 221125 HC_gene_5263_tx_11 1 + 220270 221125 . 2 141,652 0,204 -chrXI 220270 221125 HC_gene_5263_tx_12 1 + 220270 221125 . 2 418,362 0,494 -chrXI 220270 221125 HC_gene_5263_tx_13 1 + 220270 221125 . 2 166,598 0,258 -chrXI 220270 221126 HC_gene_5263_tx_14 5 + 220270 221126 . 1 857 0 -chrXI 220270 221128 HC_gene_5263_tx_15 3 + 220270 221128 . 1 859 0 -chrXI 220270 221129 HC_gene_5263_tx_16 2 + 220270 221129 . 1 860 0 -chrXI 220270 221129 HC_gene_5263_tx_17 1 + 220270 221129 . 2 761,50 0,810 -chrXI 220270 221130 HC_gene_5263_tx_18 5 + 220270 221130 . 1 861 0 -chrXI 220270 221131 HC_gene_5263_tx_19 1 + 220270 221131 . 1 862 0 -chrXI 220270 221138 HC_gene_5263_tx_20 3 + 220270 221138 . 1 869 0 -chrXI 220270 221139 HC_gene_5263_tx_21 4 + 220270 221139 . 1 870 0 -chrXI 220270 221140 HC_gene_5263_tx_22 9 + 220270 221140 . 1 871 0 -chrXI 220270 221141 HC_gene_5263_tx_23 2 + 220270 221141 . 1 872 0 -chrXI 220270 221144 HC_gene_5263_tx_24 4 + 220270 221144 . 1 875 0 -chrXI 220270 221145 HC_gene_5263_tx_25 2 + 220270 221145 . 1 876 0 -chrXI 220270 221147 HC_gene_5263_tx_26 1 + 220270 221147 . 1 878 0 -chrXI 220270 221148 HC_gene_5263_tx_27 4 + 220270 221148 . 1 879 0 -chrXI 220270 221149 HC_gene_5263_tx_28 1 + 220270 221149 . 1 880 0 -chrXI 220270 221151 HC_gene_5263_tx_29 1 + 220270 221151 . 1 882 0 -chrXI 220270 221153 HC_gene_5263_tx_30 1 + 220270 221153 . 2 770,45 0,839 -chrXI 220270 221153 HC_gene_5263_tx_31 2 + 220270 221153 . 1 884 0 -chrXI 220270 221156 HC_gene_5263_tx_32 13 + 220270 221156 . 1 887 0 -chrXI 220270 221156 HC_gene_5263_tx_33 1 + 220270 221156 . 2 754,40 0,847 -chrXI 220270 221158 HC_gene_5263_tx_34 1 + 220270 221158 . 1 889 0 -chrXI 220270 221163 HC_gene_5263_tx_35 3 + 220270 221163 . 1 894 0 -chrXI 220270 221164 HC_gene_5263_tx_36 1 + 220270 221164 . 1 895 0 -chrXI 220270 221165 HC_gene_5263_tx_37 5 + 220270 221165 . 1 896 0 -chrXI 220270 221165 HC_gene_5263_tx_38 1 + 220270 221165 . 2 740,69 0,827 -chrXI 220270 221166 HC_gene_5263_tx_39 1 + 220270 221166 . 2 463,349 0,548 -chrXI 220270 221166 HC_gene_5263_tx_40 4 + 220270 221166 . 1 897 0 -chrXI 220270 221167 HC_gene_5263_tx_41 4 + 220270 221167 . 1 898 0 -chrXI 220270 221167 HC_gene_5263_tx_42 1 + 220270 221167 . 2 720,33 0,865 -chrXI 220270 221168 HC_gene_5263_tx_43 7 + 220270 221168 . 1 899 0 -chrXI 220270 221169 HC_gene_5263_tx_44 3 + 220270 221169 . 1 900 0 -chrXI 220270 221170 HC_gene_5263_tx_45 1 + 220270 221170 . 1 901 0 -chrXI 220270 221171 HC_gene_5263_tx_46 1 + 220270 221171 . 2 740,53 0,849 -chrXI 220270 221171 HC_gene_5263_tx_47 12 + 220270 221171 . 1 902 0 -chrXI 220270 221171 HC_gene_5263_tx_48 1 + 220270 221171 . 2 740,58 0,844 -chrXI 220270 221171 HC_gene_5263_tx_49 1 + 220270 221171 . 2 728,62 0,840 -chrXI 220270 221172 HC_gene_5263_tx_50 3 + 220270 221172 . 1 903 0 -chrXI 220270 221173 HC_gene_5263_tx_51 2 + 220270 221173 . 1 904 0 -chrXI 220270 221174 HC_gene_5263_tx_52 5 + 220270 221174 . 1 905 0 -chrXI 220270 221175 HC_gene_5263_tx_53 5 + 220270 221175 . 1 906 0 -chrXI 220270 221175 HC_gene_5263_tx_54 1 + 220270 221175 . 2 723,60 0,846 -chrXI 220270 221176 HC_gene_5263_tx_55 14 + 220270 221176 . 1 907 0 -chrXI 220270 221177 HC_gene_5263_tx_56 1 + 220270 221177 . 1 908 0 -chrXI 220270 221179 HC_gene_5263_tx_57 4 + 220270 221179 . 1 910 0 -chrXI 220270 221179 HC_gene_5263_tx_58 1 + 220270 221179 . 2 166,547 0,363 -chrXI 220270 221180 HC_gene_5263_tx_59 1 + 220270 221180 . 1 911 0 -chrXI 220270 221181 HC_gene_5263_tx_60 7 + 220270 221181 . 1 912 0 -chrXI 220270 221182 HC_gene_5263_tx_61 1 + 220270 221182 . 1 913 0 -chrXI 220270 221183 HC_gene_5263_tx_62 12 + 220270 221183 . 1 914 0 -chrXI 220270 221184 HC_gene_5263_tx_63 10 + 220270 221184 . 1 915 0 -chrXI 220270 221184 HC_gene_5263_tx_64 1 + 220270 221184 . 2 508,367 0,548 -chrXI 220270 221185 HC_gene_5263_tx_65 5 + 220270 221185 . 1 916 0 -chrXI 220270 221186 HC_gene_5263_tx_66 2 + 220270 221186 . 1 917 0 -chrXI 220270 221187 HC_gene_5263_tx_67 3 + 220270 221187 . 1 918 0 -chrXI 220270 221188 HC_gene_5263_tx_68 3 + 220270 221188 . 1 919 0 -chrXI 220270 221189 HC_gene_5263_tx_69 1 + 220270 221189 . 1 920 0 -chrXI 220270 221190 HC_gene_5263_tx_70 2 + 220270 221190 . 1 921 0 -chrXI 220270 221191 HC_gene_5263_tx_71 3 + 220270 221191 . 1 922 0 -chrXI 220270 221192 HC_gene_5263_tx_72 1 + 220270 221192 . 1 923 0 -chrXI 220270 221193 HC_gene_5263_tx_73 3 + 220270 221193 . 1 924 0 -chrXI 220270 221194 HC_gene_5263_tx_74 3 + 220270 221194 . 1 925 0 -chrXI 220270 221195 HC_gene_5263_tx_75 9 + 220270 221195 . 1 926 0 -chrXI 220270 221196 HC_gene_5263_tx_76 20 + 220270 221196 . 1 927 0 -chrXI 220270 221196 HC_gene_5263_tx_77 1 + 220270 221196 . 2 463,379 0,548 -chrXI 220270 221197 HC_gene_5263_tx_78 3 + 220270 221197 . 1 928 0 -chrXI 220368 221122 HC_gene_5263_tx_79 1 + 220368 221122 . 2 410,201 0,554 -chrXI 220368 221124 HC_gene_5263_tx_80 1 + 220368 221124 . 1 757 0 -chrXI 220368 221125 HC_gene_5263_tx_81 7 + 220368 221125 . 1 758 0 -chrXI 220368 221145 HC_gene_5263_tx_82 1 + 220368 221145 . 1 778 0 -chrXI 220368 221156 HC_gene_5263_tx_83 1 + 220368 221156 . 1 789 0 -chrXI 220368 221157 HC_gene_5263_tx_84 1 + 220368 221157 . 2 630,68 0,722 -chrXI 220368 221157 HC_gene_5263_tx_85 2 + 220368 221157 . 1 790 0 -chrXI 220368 221163 HC_gene_5263_tx_86 1 + 220368 221163 . 1 796 0 -chrXI 220368 221164 HC_gene_5263_tx_87 1 + 220368 221164 . 1 797 0 -chrXI 220368 221166 HC_gene_5263_tx_88 1 + 220368 221166 . 1 799 0 -chrXI 220368 221171 HC_gene_5263_tx_89 1 + 220368 221171 . 2 630,37 0,767 -chrXI 220368 221171 HC_gene_5263_tx_90 1 + 220368 221171 . 1 804 0 -chrXI 220368 221179 HC_gene_5263_tx_91 1 + 220368 221179 . 1 812 0 -chrXI 220368 221188 HC_gene_5263_tx_92 1 + 220368 221188 . 1 821 0 -chrXI 220368 221191 HC_gene_5263_tx_93 1 + 220368 221191 . 1 824 0 -chrXI 220368 221192 HC_gene_5263_tx_94 1 + 220368 221192 . 1 825 0 -chrXI 220368 221196 HC_gene_5263_tx_95 2 + 220368 221196 . 1 829 0 -chrXI 220438 221120 HC_gene_5263_tx_96 1 + 220438 221120 . 1 683 0 -chrXI 220438 221125 HC_gene_5263_tx_97 3 + 220438 221125 . 1 688 0 -chrXI 220438 221138 HC_gene_5263_tx_98 2 + 220438 221138 . 1 701 0 -chrXI 220438 221194 HC_gene_5263_tx_99 1 + 220438 221194 . 1 757 0 -chrXI 220438 221196 HC_gene_5263_tx_100 1 + 220438 221196 . 1 759 0 -chrXI 220576 221147 HC_gene_5263_tx_101 1 + 220576 221147 . 2 319,476 0,96 -chrXI 220750 221171 HC_gene_5263_tx_102 1 + 220750 221171 . 2 145,354 0,68 -chrXI 220894 221118 HC_gene_5263_tx_103 1 + 220894 221118 . 1 225 0 -chrXI 220894 221119 HC_gene_5263_tx_104 3 + 220894 221119 . 1 226 0 -chrXI 220894 221120 HC_gene_5263_tx_105 2 + 220894 221120 . 1 227 0 -chrXI 220894 221121 HC_gene_5263_tx_106 11 + 220894 221121 . 1 228 0 -chrXI 220894 221122 HC_gene_5263_tx_107 6 + 220894 221122 . 1 229 0 -chrXI 220894 221124 HC_gene_5263_tx_108 7 + 220894 221124 . 1 231 0 -chrXI 220894 221125 HC_gene_5263_tx_109 145 + 220894 221125 . 1 232 0 -chrXI 220894 221126 HC_gene_5263_tx_110 1 + 220894 221126 . 1 233 0 -chrXI 220894 221128 HC_gene_5263_tx_111 4 + 220894 221128 . 1 235 0 -chrXI 220894 221130 HC_gene_5263_tx_112 2 + 220894 221130 . 1 237 0 -chrXI 220894 221135 HC_gene_5263_tx_113 1 + 220894 221135 . 1 242 0 -chrXI 220894 221136 HC_gene_5263_tx_114 1 + 220894 221136 . 1 243 0 -chrXI 220894 221138 HC_gene_5263_tx_115 4 + 220894 221138 . 1 245 0 -chrXI 220894 221139 HC_gene_5263_tx_116 5 + 220894 221139 . 1 246 0 -chrXI 220894 221140 HC_gene_5263_tx_117 4 + 220894 221140 . 1 247 0 -chrXI 220894 221143 HC_gene_5263_tx_118 1 + 220894 221143 . 1 250 0 -chrXI 220894 221144 HC_gene_5263_tx_119 1 + 220894 221144 . 1 251 0 -chrXI 220894 221145 HC_gene_5263_tx_120 9 + 220894 221145 . 1 252 0 -chrXI 220894 221146 HC_gene_5263_tx_121 1 + 220894 221146 . 1 253 0 -chrXI 220894 221148 HC_gene_5263_tx_122 3 + 220894 221148 . 1 255 0 -chrXI 220894 221149 HC_gene_5263_tx_123 2 + 220894 221149 . 1 256 0 -chrXI 220894 221150 HC_gene_5263_tx_124 1 + 220894 221150 . 1 257 0 -chrXI 220894 221155 HC_gene_5263_tx_125 1 + 220894 221155 . 1 262 0 -chrXI 220894 221156 HC_gene_5263_tx_126 4 + 220894 221156 . 1 263 0 -chrXI 220894 221157 HC_gene_5263_tx_127 3 + 220894 221157 . 1 264 0 -chrXI 220894 221163 HC_gene_5263_tx_128 6 + 220894 221163 . 1 270 0 -chrXI 220894 221164 HC_gene_5263_tx_129 1 + 220894 221164 . 2 104,44 0,227 -chrXI 220894 221164 HC_gene_5263_tx_130 3 + 220894 221164 . 1 271 0 -chrXI 220894 221165 HC_gene_5263_tx_131 2 + 220894 221165 . 1 272 0 -chrXI 220894 221166 HC_gene_5263_tx_132 6 + 220894 221166 . 1 273 0 -chrXI 220894 221167 HC_gene_5263_tx_133 4 + 220894 221167 . 1 274 0 -chrXI 220894 221168 HC_gene_5263_tx_134 10 + 220894 221168 . 1 275 0 -chrXI 220894 221169 HC_gene_5263_tx_135 1 + 220894 221169 . 1 276 0 -chrXI 220894 221170 HC_gene_5263_tx_136 1 + 220894 221170 . 1 277 0 -chrXI 220894 221171 HC_gene_5263_tx_137 5 + 220894 221171 . 1 278 0 -chrXI 220894 221172 HC_gene_5263_tx_138 3 + 220894 221172 . 1 279 0 -chrXI 220894 221173 HC_gene_5263_tx_139 2 + 220894 221173 . 1 280 0 -chrXI 220894 221174 HC_gene_5263_tx_140 8 + 220894 221174 . 1 281 0 -chrXI 220894 221175 HC_gene_5263_tx_141 1 + 220894 221175 . 1 282 0 -chrXI 220894 221176 HC_gene_5263_tx_142 7 + 220894 221176 . 1 283 0 -chrXI 220894 221179 HC_gene_5263_tx_143 7 + 220894 221179 . 1 286 0 -chrXI 220894 221181 HC_gene_5263_tx_144 4 + 220894 221181 . 1 288 0 -chrXI 220894 221183 HC_gene_5263_tx_145 7 + 220894 221183 . 1 290 0 -chrXI 220894 221184 HC_gene_5263_tx_146 7 + 220894 221184 . 1 291 0 -chrXI 220894 221185 HC_gene_5263_tx_147 5 + 220894 221185 . 1 292 0 -chrXI 220894 221188 HC_gene_5263_tx_148 1 + 220894 221188 . 1 295 0 -chrXI 220894 221189 HC_gene_5263_tx_149 1 + 220894 221189 . 1 296 0 -chrXI 220894 221190 HC_gene_5263_tx_150 4 + 220894 221190 . 1 297 0 -chrXI 220894 221191 HC_gene_5263_tx_151 6 + 220894 221191 . 1 298 0 -chrXI 220894 221192 HC_gene_5263_tx_152 3 + 220894 221192 . 1 299 0 -chrXI 220894 221193 HC_gene_5263_tx_153 2 + 220894 221193 . 1 300 0 -chrXI 220894 221194 HC_gene_5263_tx_154 3 + 220894 221194 . 1 301 0 -chrXI 220894 221195 HC_gene_5263_tx_155 5 + 220894 221195 . 1 302 0 -chrXI 220894 221196 HC_gene_5263_tx_156 23 + 220894 221196 . 1 303 0 -chrXI 220894 221197 HC_gene_5263_tx_157 5 + 220894 221197 . 1 304 0 -chrXI 221041 222902 HC_gene_5528_tx_1 12 - 221041 222902 . 1 1862 0 -chrXI 221041 223092 HC_gene_5528_tx_2 10 - 221041 223092 . 1 2052 0 -chrXI 221202 222902 HC_gene_5528_tx_3 4 - 221202 222902 . 1 1701 0 -chrXI 221202 223092 HC_gene_5528_tx_4 10 - 221202 223092 . 1 1891 0 -chrXI 223175 223581 HC_gene_5529_tx_1 4 - 223175 223581 . 1 407 0 -chrXI 223175 224484 HC_gene_5529_tx_2 2 - 223175 224484 . 1 1310 0 -chrXI 223265 223581 HC_gene_5529_tx_7 52 - 223265 223581 . 1 317 0 -chrXI 223265 224170 HC_gene_5529_tx_8 9 - 223265 224170 . 1 906 0 -chrXI 223265 224484 HC_gene_5529_tx_3 47 - 223265 224484 . 1 1220 0 -chrXI 223265 224484 HC_gene_5529_tx_4 1 - 223265 224484 . 2 919,96 0,1124 -chrXI 223265 224484 HC_gene_5529_tx_5 1 - 223265 224484 . 3 390,69,196 0,434,1024 -chrXI 223265 224484 HC_gene_5529_tx_6 1 - 223265 224484 . 2 291,494 0,726 -chrXI 223621 224694 LC_gene_5264_tx_1 1 + 223621 224694 . 1 1074 0 -chrXI 224618 225490 HC_gene_5530_tx_1 22 - 224618 225490 . 1 873 0 -chrXI 224618 225678 HC_gene_5530_tx_2 8 - 224618 225678 . 1 1061 0 -chrXI 224618 225925 HC_gene_5530_tx_3 26 - 224618 225925 . 1 1308 0 -chrXI 224618 225925 HC_gene_5530_tx_4 1 - 224618 225925 . 2 272,285 0,1023 -chrXI 225024 225878 LC_gene_5265_tx_1 1 + 225024 225878 . 1 855 0 -chrXI 226502 228907 HC_gene_5266_tx_1 9 + 226502 228907 . 1 2406 0 -chrXI 227412 228907 HC_gene_5266_tx_2 8 + 227412 228907 . 1 1496 0 -chrXI 228774 229051 HC_gene_5531_tx_1 6 - 228774 229051 . 1 278 0 -chrXI 228774 229421 HC_gene_5531_tx_2 12 - 228774 229421 . 1 648 0 -chrXI 228774 229903 HC_gene_5531_tx_3 30 - 228774 229903 . 1 1130 0 -chrXI 228774 230113 HC_gene_5531_tx_4 4 - 228774 230113 . 1 1340 0 -chrXI 228774 230314 HC_gene_5531_tx_5 1 - 228774 230314 . 1 1541 0 -chrXI 229465 229721 LC_gene_5267_tx_1 1 + 229465 229721 . 1 257 0 -chrXI 230279 230713 HC_gene_5268_tx_1 7 + 230279 230713 . 1 435 0 -chrXI 230354 230713 HC_gene_5268_tx_2 2 + 230354 230713 . 1 360 0 -chrXI 230886 231751 LC_gene_5532_tx_1 1 - 230886 231751 . 1 866 0 -chrXI 231318 231866 HC_gene_5269_tx_1 6 + 231318 231866 . 1 549 0 -chrXI 231887 234256 HC_gene_5270_tx_1 23 + 231887 234256 . 1 2370 0 -chrXI 231955 234256 HC_gene_5270_tx_2 46 + 231955 234256 . 1 2302 0 -chrXI 231955 234256 HC_gene_5270_tx_3 1 + 231955 234256 . 2 866,737 0,1565 -chrXI 231955 234256 HC_gene_5270_tx_4 1 + 231955 234256 . 2 339,1880 0,422 -chrXI 232412 234256 HC_gene_5270_tx_5 15 + 232412 234256 . 1 1845 0 -chrXI 233212 233578 MC_gene_5533_tx_1 1 - 233212 233578 . 1 367 0 -chrXI 233582 234256 HC_gene_5270_tx_6 34 + 233582 234256 . 1 675 0 -chrXI 233642 234067 MC_gene_5534_tx_1 1 - 233642 234067 . 1 426 0 -chrXI 233929 234197 MC_gene_5535_tx_1 1 - 233929 234197 . 1 269 0 -chrXI 234405 235859 HC_gene_5271_tx_1 16 + 234405 235859 . 1 1455 0 -chrXI 234405 235859 HC_gene_5271_tx_2 1 + 234405 235859 . 2 844,528 0,927 -chrXI 235799 237042 MC_gene_5536_tx_1 1 - 235799 237042 . 1 1244 0 -chrXI 236181 237132 MC_gene_5272_tx_1 1 + 236181 237132 . 1 952 0 -chrXI 237435 238289 HC_gene_5273_tx_1 1 + 237435 238289 . 1 855 0 -chrXI 237435 238381 HC_gene_5273_tx_2 5 + 237435 238381 . 1 947 0 -chrXI 237435 239013 HC_gene_5273_tx_3 23 + 237435 239013 . 1 1579 0 -chrXI 237435 239013 HC_gene_5273_tx_4 1 + 237435 239013 . 2 837,674 0,905 -chrXI 237435 239013 HC_gene_5273_tx_5 1 + 237435 239013 . 2 839,672 0,907 -chrXI 237435 239013 HC_gene_5273_tx_6 1 + 237435 239013 . 2 930,430 0,1149 -chrXI 238543 242782 MC_gene_5537_tx_1 1 - 238543 242782 . 2 1996,2186 0,2054 -chrXI 239018 240904 MC_gene_5537_tx_2 1 - 239018 240904 . 1 1887 0 -chrXI 239155 241627 MC_gene_5537_tx_3 1 - 239155 241627 . 1 2473 0 -chrXI 240442 241286 MC_gene_5274_tx_1 1 + 240442 241286 . 1 845 0 -chrXI 241563 242037 MC_gene_5537_tx_4 1 - 241563 242037 . 1 475 0 -chrXI 242823 243100 MC_gene_5275_tx_1 1 + 242823 243100 . 1 278 0 -chrXI 242988 243271 HC_gene_5538_tx_1 31 - 242988 243271 . 1 284 0 -chrXI 242988 243394 HC_gene_5538_tx_2 60 - 242988 243394 . 1 407 0 -chrXI 242988 244782 HC_gene_5538_tx_3 1 - 242988 244782 . 3 649,792,183 0,727,1612 -chrXI 242988 244835 HC_gene_5538_tx_4 6 - 242988 244835 . 1 1848 0 -chrXI 242988 245109 HC_gene_5538_tx_5 4 - 242988 245109 . 1 2122 0 -chrXI 242988 245109 HC_gene_5538_tx_6 1 - 242988 245109 . 2 1064,622 0,1500 -chrXI 242988 245324 HC_gene_5538_tx_7 8 - 242988 245324 . 1 2337 0 -chrXI 242988 245324 HC_gene_5538_tx_8 1 - 242988 245324 . 2 1567,433 0,1904 -chrXI 242988 245576 HC_gene_5538_tx_9 53 - 242988 245576 . 1 2589 0 -chrXI 242988 245576 HC_gene_5538_tx_10 1 - 242988 245576 . 2 174,2370 0,219 -chrXI 242988 245576 HC_gene_5538_tx_11 1 - 242988 245576 . 2 2402,89 0,2500 -chrXI 242988 245576 HC_gene_5538_tx_12 1 - 242988 245576 . 2 1233,1299 0,1290 -chrXI 242988 245576 HC_gene_5538_tx_13 1 - 242988 245576 . 2 1149,1356 0,1233 -chrXI 244585 244959 LC_gene_5276_tx_1 1 + 244585 244959 . 1 375 0 -chrXI 245766 246028 MC_gene_5277_tx_1 1 + 245766 246028 . 1 263 0 -chrXI 245951 246527 HC_gene_5539_tx_1 8 - 245951 246527 . 1 577 0 -chrXI 245951 246609 HC_gene_5539_tx_2 6 - 245951 246609 . 1 659 0 -chrXI 245951 247158 HC_gene_5539_tx_3 10 - 245951 247158 . 1 1208 0 -chrXI 245951 247309 HC_gene_5539_tx_4 9 - 245951 247309 . 1 1359 0 -chrXI 245951 247712 HC_gene_5539_tx_5 42 - 245951 247712 . 1 1762 0 -chrXI 245951 247712 HC_gene_5539_tx_6 1 - 245951 247712 . 2 750,879 0,883 -chrXI 245951 247712 HC_gene_5539_tx_7 1 - 245951 247712 . 2 750,907 0,855 -chrXI 245951 247876 HC_gene_5539_tx_8 1 - 245951 247876 . 1 1926 0 -chrXI 246172 247815 HC_gene_5278_tx_1 2 + 246172 247815 . 1 1644 0 -chrXI 248658 248884 HC_gene_5279_tx_1 1 + 248658 248884 . 1 227 0 -chrXI 250827 253526 HC_gene_5280_tx_1 1 + 250827 253526 . 2 1273,1243 0,1457 -chrXI 250827 253526 HC_gene_5280_tx_2 3 + 250827 253526 . 1 2700 0 -chrXI 251260 253526 HC_gene_5280_tx_3 1 + 251260 253526 . 2 196,1827 0,440 -chrXI 251260 253526 HC_gene_5280_tx_4 1 + 251260 253526 . 1 2267 0 -chrXI 252106 253526 HC_gene_5280_tx_5 8 + 252106 253526 . 1 1421 0 -chrXI 252382 253526 HC_gene_5280_tx_6 4 + 252382 253526 . 1 1145 0 -chrXI 252382 253526 HC_gene_5280_tx_7 1 + 252382 253526 . 2 181,900 0,245 -chrXI 252851 253526 HC_gene_5280_tx_8 13 + 252851 253526 . 1 676 0 -chrXI 253454 254716 HC_gene_5540_tx_1 9 - 253454 254716 . 1 1263 0 -chrXI 253454 255190 HC_gene_5540_tx_3 6 - 253454 255190 . 1 1737 0 -chrXI 253454 255387 HC_gene_5540_tx_4 5 - 253454 255387 . 1 1934 0 -chrXI 253454 255484 HC_gene_5540_tx_5 31 - 253454 255484 . 1 2031 0 -chrXI 253454 255484 HC_gene_5540_tx_6 1 - 253454 255484 . 2 882,292 0,1739 -chrXI 253454 255484 HC_gene_5540_tx_7 1 - 253454 255484 . 2 1349,647 0,1384 -chrXI 253542 254716 HC_gene_5540_tx_2 3 - 253542 254716 . 1 1175 0 -chrXI 253542 255190 HC_gene_5540_tx_8 1 - 253542 255190 . 1 1649 0 -chrXI 253542 255387 HC_gene_5540_tx_9 1 - 253542 255387 . 1 1846 0 -chrXI 253542 255484 HC_gene_5540_tx_10 6 - 253542 255484 . 1 1943 0 -chrXI 255668 256516 HC_gene_5541_tx_1 119 - 255668 256516 . 1 849 0 -chrXI 255702 256086 LC_gene_5281_tx_1 1 + 255702 256086 . 1 385 0 -chrXI 256743 257929 HC_gene_5282_tx_1 30 + 256743 257929 . 1 1187 0 -chrXI 256743 257929 HC_gene_5282_tx_2 1 + 256743 257929 . 2 826,319 0,868 -chrXI 257871 258349 MC_gene_5542_tx_1 1 - 257871 258349 . 1 479 0 -chrXI 259204 259703 HC_gene_5283_tx_1 14984 + 259204 259703 . 1 500 0 -chrXI 259583 259971 HC_gene_5543_tx_1 6 - 259583 259971 . 1 389 0 -chrXI 259583 260309 HC_gene_5543_tx_2 1 - 259583 260309 . 1 727 0 -chrXI 260641 261058 MC_gene_5544_tx_1 1 - 260641 261058 . 1 418 0 -chrXI 261089 261959 HC_gene_5284_tx_1 175 + 261089 261959 . 1 871 0 -chrXI 261215 261959 HC_gene_5284_tx_2 17 + 261215 261959 . 1 745 0 -chrXI 261317 261959 HC_gene_5284_tx_3 26 + 261317 261959 . 1 643 0 -chrXI 261552 261959 HC_gene_5284_tx_4 34 + 261552 261959 . 1 408 0 -chrXI 262094 264383 HC_gene_5285_tx_1 11 + 262094 264383 . 1 2290 0 -chrXI 262094 264383 HC_gene_5285_tx_2 1 + 262094 264383 . 2 1093,1085 0,1205 -chrXI 262094 264383 HC_gene_5285_tx_3 1 + 262094 264383 . 2 1108,1112 0,1178 -chrXI 262161 264383 HC_gene_5285_tx_4 1 + 262161 264383 . 2 1432,720 0,1503 -chrXI 262611 264383 HC_gene_5285_tx_5 1 + 262611 264383 . 1 1773 0 -chrXI 263330 264383 HC_gene_5285_tx_6 105 + 263330 264383 . 1 1054 0 -chrXI 263341 264383 HC_gene_5285_tx_7 1 + 263341 264383 . 2 240,744 0,299 -chrXI 263580 264383 HC_gene_5285_tx_8 12 + 263580 264383 . 1 804 0 -chrXI 263580 264383 HC_gene_5285_tx_9 1 + 263580 264383 . 2 87,482 0,322 -chrXI 263724 264383 HC_gene_5285_tx_10 15 + 263724 264383 . 1 660 0 -chrXI 263778 264383 HC_gene_5285_tx_11 10 + 263778 264383 . 1 606 0 -chrXI 263879 264383 HC_gene_5285_tx_12 1 + 263879 264383 . 2 131,287 0,218 -chrXI 263879 264383 HC_gene_5285_tx_13 15 + 263879 264383 . 1 505 0 -chrXI 263950 264383 HC_gene_5285_tx_14 8 + 263950 264383 . 1 434 0 -chrXI 264015 264383 HC_gene_5285_tx_15 20 + 264015 264383 . 1 369 0 -chrXI 264281 265975 HC_gene_5545_tx_1 14 - 264281 265975 . 1 1695 0 -chrXI 264727 265962 HC_gene_5286_tx_1 1 + 264727 265962 . 1 1236 0 -chrXI 265926 266537 HC_gene_5546_tx_1 5 - 265926 266537 . 1 612 0 -chrXI 265926 266888 HC_gene_5546_tx_2 4 - 265926 266888 . 1 963 0 -chrXI 265926 269535 HC_gene_5546_tx_3 3 - 265926 269535 . 1 3610 0 -chrXI 269614 270415 HC_gene_5547_tx_1 4 - 269614 270415 . 1 802 0 -chrXI 269614 270678 HC_gene_5547_tx_2 42 - 269614 270678 . 1 1065 0 -chrXI 269674 269936 MC_gene_5287_tx_1 1 + 269674 269936 . 1 263 0 -chrXI 269988 270921 LC_gene_5288_tx_1 1 + 269988 270921 . 1 934 0 -chrXI 270757 271659 HC_gene_5548_tx_1 11 - 270757 271659 . 1 903 0 -chrXI 270757 271659 HC_gene_5548_tx_2 1 - 270757 271659 . 2 88,307 0,596 -chrXI 270858 271659 HC_gene_5548_tx_3 1 - 270858 271659 . 1 802 0 -chrXI 270981 271741 MC_gene_5289_tx_1 1 + 270981 271741 . 1 761 0 -chrXI 271583 272094 HC_gene_5549_tx_1 2 - 271583 272094 . 1 512 0 -chrXI 271583 273154 HC_gene_5549_tx_2 1 - 271583 273154 . 1 1572 0 -chrXI 271853 273390 HC_gene_5290_tx_1 1 + 271853 273390 . 1 1538 0 -chrXI 271859 273390 HC_gene_5290_tx_2 1 + 271859 273390 . 1 1532 0 -chrXI 271872 273258 HC_gene_5290_tx_3 3 + 271872 273258 . 1 1387 0 -chrXI 271872 273390 HC_gene_5290_tx_4 9 + 271872 273390 . 1 1519 0 -chrXI 271873 273390 HC_gene_5290_tx_5 1 + 271873 273390 . 1 1518 0 -chrXI 272399 273390 HC_gene_5290_tx_6 2 + 272399 273390 . 1 992 0 -chrXI 272438 273390 HC_gene_5290_tx_7 1 + 272438 273390 . 1 953 0 -chrXI 273364 275110 HC_gene_5291_tx_1 8 + 273364 275110 . 1 1747 0 -chrXI 273364 277088 HC_gene_5291_tx_2 1 + 273364 277088 . 1 3725 0 -chrXI 274272 275110 HC_gene_5291_tx_3 4 + 274272 275110 . 1 839 0 -chrXI 274272 275273 HC_gene_5291_tx_4 1 + 274272 275273 . 1 1002 0 -chrXI 274272 277169 HC_gene_5291_tx_7 1 + 274272 277169 . 1 2898 0 -chrXI 274368 275110 HC_gene_5291_tx_5 5 + 274368 275110 . 1 743 0 -chrXI 274368 275385 HC_gene_5291_tx_6 1 + 274368 275385 . 1 1018 0 -chrXI 274488 275021 LC_gene_5550_tx_1 1 - 274488 275021 . 1 534 0 -chrXI 275253 277088 HC_gene_5291_tx_8 1 + 275253 277088 . 1 1836 0 -chrXI 275253 277169 HC_gene_5291_tx_9 27 + 275253 277169 . 1 1917 0 -chrXI 275253 277169 HC_gene_5291_tx_10 1 + 275253 277169 . 2 970,581 0,1336 -chrXI 275479 277169 HC_gene_5291_tx_11 5 + 275479 277169 . 1 1691 0 -chrXI 275479 277169 HC_gene_5291_tx_12 1 + 275479 277169 . 2 258,1380 0,311 -chrXI 275672 277088 HC_gene_5291_tx_13 2 + 275672 277088 . 1 1417 0 -chrXI 275672 277169 HC_gene_5291_tx_14 6 + 275672 277169 . 1 1498 0 -chrXI 276699 277169 HC_gene_5291_tx_15 28 + 276699 277169 . 1 471 0 -chrXI 276975 277655 HC_gene_5551_tx_1 1 - 276975 277655 . 1 681 0 -chrXI 276975 277952 HC_gene_5551_tx_3 6 - 276975 277952 . 1 978 0 -chrXI 277064 277655 HC_gene_5551_tx_2 9 - 277064 277655 . 1 592 0 -chrXI 277064 277841 HC_gene_5551_tx_4 1 - 277064 277841 . 1 778 0 -chrXI 277064 277952 HC_gene_5551_tx_5 88 - 277064 277952 . 1 889 0 -chrXI 277064 277952 HC_gene_5551_tx_6 1 - 277064 277952 . 2 409,404 0,485 -chrXI 277185 277952 HC_gene_5551_tx_7 1 - 277185 277952 . 1 768 0 -chrXI 278262 278757 MC_gene_5292_tx_1 1 + 278262 278757 . 1 496 0 -chrXI 278399 278732 MC_gene_5292_tx_2 1 + 278399 278732 . 1 334 0 -chrXI 278651 278882 LC_gene_5552_tx_1 1 - 278651 278882 . 1 232 0 -chrXI 278767 280524 HC_gene_5293_tx_1 2 + 278767 280524 . 1 1758 0 -chrXI 278999 280524 HC_gene_5293_tx_2 1 + 278999 280524 . 1 1526 0 -chrXI 279031 280209 HC_gene_5293_tx_13 1 + 279031 280209 . 3 396,318,246 0,569,933 -chrXI 279031 280524 HC_gene_5293_tx_3 113 + 279031 280524 . 1 1494 0 -chrXI 279031 280524 HC_gene_5293_tx_4 1 + 279031 280524 . 2 92,736 0,758 -chrXI 279031 280524 HC_gene_5293_tx_5 1 + 279031 280524 . 2 1331,67 0,1427 -chrXI 279031 280524 HC_gene_5293_tx_6 1 + 279031 280524 . 2 645,715 0,779 -chrXI 279031 280524 HC_gene_5293_tx_7 1 + 279031 280524 . 2 834,583 0,911 -chrXI 279031 280524 HC_gene_5293_tx_8 1 + 279031 280524 . 2 405,1041 0,453 -chrXI 279031 281021 HC_gene_5293_tx_14 1 + 279031 281021 . 2 1105,797 0,1194 -chrXI 279031 281021 HC_gene_5293_tx_15 1 + 279031 281021 . 1 1991 0 -chrXI 279044 280524 HC_gene_5293_tx_9 3 + 279044 280524 . 1 1481 0 -chrXI 279049 280524 HC_gene_5293_tx_10 1 + 279049 280524 . 1 1476 0 -chrXI 279337 280299 HC_gene_5293_tx_11 1 + 279337 280299 . 1 963 0 -chrXI 279337 280524 HC_gene_5293_tx_12 16 + 279337 280524 . 1 1188 0 -chrXI 279583 280524 HC_gene_5293_tx_16 27 + 279583 280524 . 1 942 0 -chrXI 279870 280524 HC_gene_5293_tx_17 30 + 279870 280524 . 1 655 0 -chrXI 279870 280524 HC_gene_5293_tx_18 1 + 279870 280524 . 2 406,170 0,485 -chrXI 279987 280524 HC_gene_5293_tx_19 20 + 279987 280524 . 1 538 0 -chrXI 280102 280524 HC_gene_5293_tx_20 42 + 280102 280524 . 1 423 0 -chrXI 280435 282107 HC_gene_5553_tx_1 1 - 280435 282107 . 1 1673 0 -chrXI 280482 281021 HC_gene_5293_tx_21 107 + 280482 281021 . 1 540 0 -chrXI 280482 281021 HC_gene_5293_tx_22 1 + 280482 281021 . 2 416,81 0,459 -chrXI 280645 281021 HC_gene_5293_tx_23 15 + 280645 281021 . 1 377 0 -chrXI 280915 281166 HC_gene_5553_tx_2 9 - 280915 281166 . 1 252 0 -chrXI 280915 281220 HC_gene_5553_tx_3 20 - 280915 281220 . 1 306 0 -chrXI 280915 281393 HC_gene_5553_tx_4 63 - 280915 281393 . 1 479 0 -chrXI 280915 281393 HC_gene_5553_tx_5 1 - 280915 281393 . 2 313,99 0,380 -chrXI 280915 281393 HC_gene_5553_tx_6 1 - 280915 281393 . 2 44,361 0,118 -chrXI 280915 281510 HC_gene_5553_tx_7 36 - 280915 281510 . 1 596 0 -chrXI 280915 281732 HC_gene_5553_tx_8 39 - 280915 281732 . 1 818 0 -chrXI 280915 281732 HC_gene_5553_tx_9 1 - 280915 281732 . 2 409,291 0,527 -chrXI 280915 281837 HC_gene_5553_tx_10 10 - 280915 281837 . 1 923 0 -chrXI 280915 281915 HC_gene_5553_tx_11 18 - 280915 281915 . 1 1001 0 -chrXI 280915 282016 HC_gene_5553_tx_12 5 - 280915 282016 . 1 1102 0 -chrXI 280915 282016 HC_gene_5553_tx_13 1 - 280915 282016 . 2 371,83 0,1019 -chrXI 280915 282107 HC_gene_5553_tx_14 12 - 280915 282107 . 1 1193 0 -chrXI 280915 282107 HC_gene_5553_tx_15 1 - 280915 282107 . 2 871,214 0,979 -chrXI 280915 282278 HC_gene_5553_tx_16 6 - 280915 282278 . 1 1364 0 -chrXI 280915 282278 HC_gene_5553_tx_17 1 - 280915 282278 . 2 791,385 0,979 -chrXI 280915 282278 HC_gene_5553_tx_18 1 - 280915 282278 . 2 955,142 0,1222 -chrXI 280915 282395 HC_gene_5553_tx_19 76 - 280915 282395 . 1 1481 0 -chrXI 280915 282395 HC_gene_5553_tx_20 1 - 280915 282395 . 2 885,219 0,1262 -chrXI 280915 282395 HC_gene_5553_tx_21 1 - 280915 282395 . 2 871,502 0,979 -chrXI 280915 282395 HC_gene_5553_tx_22 1 - 280915 282395 . 2 500,532 0,949 -chrXI 280915 282395 HC_gene_5553_tx_23 1 - 280915 282395 . 2 691,733 0,748 -chrXI 280915 282395 HC_gene_5553_tx_24 1 - 280915 282395 . 2 1215,158 0,1323 -chrXI 282865 284524 HC_gene_5294_tx_1 1 + 282865 284524 . 2 231,1103 0,557 -chrXI 282865 284675 HC_gene_5294_tx_2 959 + 282865 284675 . 2 231,1254 0,557 -chrXI 282865 284675 HC_gene_5294_tx_3 1 + 282865 284675 . 2 231,1269 0,542 -chrXI 282865 284675 HC_gene_5294_tx_4 1 + 282865 284675 . 3 231,664,528 0,557,1283 -chrXI 282865 284675 HC_gene_5294_tx_5 1 + 282865 284675 . 3 231,666,527 0,557,1284 -chrXI 282865 284675 HC_gene_5294_tx_6 1 + 282865 284675 . 3 231,267,754 0,557,1057 -chrXI 282865 284675 HC_gene_5294_tx_7 1 + 282865 284675 . 3 231,556,621 0,557,1190 -chrXI 282865 284675 HC_gene_5294_tx_8 1 + 282865 284675 . 2 254,1254 0,557 -chrXI 282865 284675 HC_gene_5294_tx_9 22 + 282865 284675 . 1 1811 0 -chrXI 282865 284675 HC_gene_5294_tx_10 1 + 282865 284675 . 3 231,1022,157 0,557,1654 -chrXI 282865 284675 HC_gene_5294_tx_11 1 + 282865 284675 . 3 231,123,940 0,557,871 -chrXI 282865 284675 HC_gene_5294_tx_12 1 + 282865 284675 . 3 231,554,565 0,557,1246 -chrXI 282865 284675 HC_gene_5294_tx_13 1 + 282865 284675 . 2 279,1254 0,557 -chrXI 282865 284675 HC_gene_5294_tx_14 1 + 282865 284675 . 3 231,358,735 0,557,1076 -chrXI 282865 284675 HC_gene_5294_tx_15 4 + 282865 284675 . 2 235,1254 0,557 -chrXI 282865 284675 HC_gene_5294_tx_16 2 + 282865 284675 . 2 270,1254 0,557 -chrXI 282865 284675 HC_gene_5294_tx_17 1 + 282865 284675 . 2 231,1242 0,569 -chrXI 282865 284675 HC_gene_5294_tx_18 1 + 282865 284675 . 2 250,1254 0,557 -chrXI 282865 284675 HC_gene_5294_tx_19 1 + 282865 284675 . 3 231,527,621 0,557,1190 -chrXI 282865 284675 HC_gene_5294_tx_20 1 + 282865 284675 . 3 216,205,810 0,615,1001 -chrXI 282865 284675 HC_gene_5294_tx_21 2 + 282865 284675 . 2 231,143 0,1668 -chrXI 282865 284675 HC_gene_5294_tx_22 1 + 282865 284675 . 3 231,90,1031 0,557,780 -chrXI 282865 284675 HC_gene_5294_tx_23 2 + 282865 284675 . 2 231,862 0,949 -chrXI 282865 284675 HC_gene_5294_tx_24 1 + 282865 284675 . 2 231,1293 0,518 -chrXI 282865 284675 HC_gene_5294_tx_25 1 + 282865 284675 . 3 231,407,754 0,557,1057 -chrXI 282865 284675 HC_gene_5294_tx_26 1 + 282865 284675 . 2 219,1254 0,557 -chrXI 282865 284675 HC_gene_5294_tx_27 1 + 282865 284675 . 2 231,1238 0,573 -chrXI 282865 284675 HC_gene_5294_tx_28 1 + 282865 284675 . 2 186,810 0,1001 -chrXI 282865 284675 HC_gene_5294_tx_29 2 + 282865 284675 . 2 231,150 0,1661 -chrXI 282865 284675 HC_gene_5294_tx_30 1 + 282865 284675 . 2 231,1261 0,550 -chrXI 282865 284675 HC_gene_5294_tx_31 1 + 282865 284675 . 2 256,1246 0,565 -chrXI 282865 284675 HC_gene_5294_tx_32 1 + 282865 284675 . 3 231,667,491 0,557,1320 -chrXI 283057 284675 HC_gene_5294_tx_33 12 + 283057 284675 . 2 39,1254 0,365 -chrXI 283057 284675 HC_gene_5294_tx_34 7 + 283057 284675 . 1 1619 0 -chrXI 283505 284675 HC_gene_5294_tx_35 178 + 283505 284675 . 1 1171 0 -chrXI 283505 284675 HC_gene_5294_tx_36 1 + 283505 284675 . 2 512,443 0,728 -chrXI 283505 284675 HC_gene_5294_tx_37 1 + 283505 284675 . 2 847,181 0,990 -chrXI 283505 284675 HC_gene_5294_tx_38 1 + 283505 284675 . 2 926,135 0,1036 -chrXI 283566 284675 HC_gene_5294_tx_39 31 + 283566 284675 . 1 1110 0 -chrXI 283566 284675 HC_gene_5294_tx_40 1 + 283566 284675 . 2 569,409 0,701 -chrXI 283753 284675 HC_gene_5294_tx_41 416 + 283753 284675 . 1 923 0 -chrXI 284277 284675 HC_gene_5294_tx_42 747 + 284277 284675 . 1 399 0 -chrXI 284277 284675 HC_gene_5294_tx_43 1 + 284277 284675 . 2 265,72 0,327 -chrXI 284387 284675 HC_gene_5294_tx_44 64 + 284387 284675 . 1 289 0 -chrXI 284924 286261 HC_gene_5295_tx_1 229 + 284924 286261 . 1 1338 0 -chrXI 284924 286261 HC_gene_5295_tx_2 1 + 284924 286261 . 2 357,902 0,436 -chrXI 284924 286261 HC_gene_5295_tx_3 1 + 284924 286261 . 2 66,1057 0,281 -chrXI 284924 286261 HC_gene_5295_tx_4 1 + 284924 286261 . 2 1194,74 0,1264 -chrXI 284924 286261 HC_gene_5295_tx_5 1 + 284924 286261 . 2 1214,73 0,1265 -chrXI 284924 286261 HC_gene_5295_tx_6 1 + 284924 286261 . 2 1211,69 0,1269 -chrXI 285036 286261 HC_gene_5295_tx_7 22 + 285036 286261 . 1 1226 0 -chrXI 285150 286261 HC_gene_5295_tx_8 22 + 285150 286261 . 1 1112 0 -chrXI 285258 286261 HC_gene_5295_tx_9 24 + 285258 286261 . 1 1004 0 -chrXI 285532 286261 HC_gene_5295_tx_10 44 + 285532 286261 . 1 730 0 -chrXI 285532 286261 HC_gene_5295_tx_11 1 + 285532 286261 . 2 211,425 0,305 -chrXI 285676 286261 HC_gene_5295_tx_12 35 + 285676 286261 . 1 586 0 -chrXI 285822 286261 HC_gene_5295_tx_13 36 + 285822 286261 . 1 440 0 -chrXI 285893 286261 HC_gene_5295_tx_14 31 + 285893 286261 . 1 369 0 -chrXI 286159 286381 HC_gene_5554_tx_1 4 - 286159 286381 . 1 223 0 -chrXI 286509 288651 HC_gene_5296_tx_1 20 + 286509 288651 . 1 2143 0 -chrXI 286682 288651 HC_gene_5296_tx_2 1 + 286682 288651 . 2 935,941 0,1029 -chrXI 286806 288651 HC_gene_5296_tx_3 3 + 286806 288651 . 1 1846 0 -chrXI 286957 288651 HC_gene_5296_tx_4 1 + 286957 288651 . 2 951,697 0,998 -chrXI 286957 288651 HC_gene_5296_tx_5 4 + 286957 288651 . 1 1695 0 -chrXI 287600 288651 HC_gene_5296_tx_6 2 + 287600 288651 . 1 1052 0 -chrXI 288822 291143 HC_gene_5297_tx_1 8 + 288822 291143 . 1 2322 0 -chrXI 291043 291210 MC_gene_5555_tx_1 1 - 291043 291210 . 1 168 0 -chrXI 291290 291816 MC_gene_5556_tx_1 1 - 291290 291816 . 1 527 0 -chrXI 291388 292948 HC_gene_5298_tx_1 118 + 291388 292948 . 1 1561 0 -chrXI 291388 292948 HC_gene_5298_tx_2 1 + 291388 292948 . 2 728,755 0,806 -chrXI 291388 292948 HC_gene_5298_tx_3 1 + 291388 292948 . 2 1293,187 0,1374 -chrXI 291388 292948 HC_gene_5298_tx_4 1 + 291388 292948 . 2 844,644 0,917 -chrXI 291388 292948 HC_gene_5298_tx_5 1 + 291388 292948 . 2 54,1029 0,532 -chrXI 291388 292948 HC_gene_5298_tx_6 1 + 291388 292948 . 2 863,620 0,941 -chrXI 291388 292948 HC_gene_5298_tx_7 1 + 291388 292948 . 2 852,620 0,941 -chrXI 291388 292948 HC_gene_5298_tx_8 1 + 291388 292948 . 2 833,624 0,937 -chrXI 291388 292948 HC_gene_5298_tx_9 1 + 291388 292948 . 2 936,480 0,1081 -chrXI 291943 292948 HC_gene_5298_tx_10 14 + 291943 292948 . 1 1006 0 -chrXI 292580 294401 HC_gene_5557_tx_1 1 - 292580 294401 . 1 1822 0 -chrXI 292750 293397 HC_gene_5557_tx_4 6 - 292750 293397 . 1 648 0 -chrXI 292750 294401 HC_gene_5557_tx_2 28 - 292750 294401 . 1 1652 0 -chrXI 292750 294401 HC_gene_5557_tx_3 1 - 292750 294401 . 2 809,441 0,1211 -chrXI 294513 296218 HC_gene_5558_tx_1 31 - 294513 296218 . 1 1706 0 -chrXI 294513 296218 HC_gene_5558_tx_2 1 - 294513 296218 . 2 795,867 0,839 -chrXI 294773 295678 LC_gene_5299_tx_1 1 + 294773 295678 . 1 906 0 -chrXI 296395 297506 HC_gene_5300_tx_1 1 + 296395 297506 . 1 1112 0 -chrXI 298407 299166 HC_gene_5301_tx_1 9 + 298407 299166 . 1 760 0 -chrXI 298682 299166 HC_gene_5301_tx_2 14 + 298682 299166 . 1 485 0 -chrXI 298785 299140 LC_gene_5559_tx_1 1 - 298785 299140 . 1 356 0 -chrXI 298906 299166 HC_gene_5301_tx_3 21 + 298906 299166 . 1 261 0 -chrXI 298906 299447 HC_gene_5301_tx_4 1 + 298906 299447 . 1 542 0 -chrXI 298906 301605 HC_gene_5301_tx_5 1 + 298906 301605 . 1 2700 0 -chrXI 299376 301605 HC_gene_5301_tx_6 2 + 299376 301605 . 1 2230 0 -chrXI 299376 302015 HC_gene_5301_tx_7 6 + 299376 302015 . 1 2640 0 -chrXI 299376 302460 HC_gene_5301_tx_8 3 + 299376 302460 . 1 3085 0 -chrXI 299467 302460 HC_gene_5301_tx_9 1 + 299467 302460 . 1 2994 0 -chrXI 302342 302775 MC_gene_5560_tx_1 1 - 302342 302775 . 1 434 0 -chrXI 303555 304113 HC_gene_5561_tx_1 8 - 303555 304113 . 1 559 0 -chrXI 303555 304182 HC_gene_5561_tx_2 3 - 303555 304182 . 1 628 0 -chrXI 303555 304699 HC_gene_5561_tx_3 20 - 303555 304699 . 1 1145 0 -chrXI 303555 304699 HC_gene_5561_tx_4 1 - 303555 304699 . 2 204,901 0,244 -chrXI 303555 307031 HC_gene_5561_tx_5 1 - 303555 307031 . 1 3477 0 -chrXI 304283 304699 HC_gene_5561_tx_6 5 - 304283 304699 . 1 417 0 -chrXI 304283 307031 HC_gene_5561_tx_7 1 - 304283 307031 . 1 2749 0 -chrXI 304897 305967 HC_gene_5302_tx_1 10 + 304897 305967 . 1 1071 0 -chrXI 304897 306980 HC_gene_5302_tx_2 1 + 304897 306980 . 1 2084 0 -chrXI 304932 307031 HC_gene_5561_tx_8 1 - 304932 307031 . 1 2100 0 -chrXI 305849 307031 HC_gene_5561_tx_9 6 - 305849 307031 . 1 1183 0 -chrXI 306040 306949 HC_gene_5561_tx_10 2 - 306040 306949 . 1 910 0 -chrXI 306040 307031 HC_gene_5561_tx_11 3 - 306040 307031 . 1 992 0 -chrXI 307276 307892 HC_gene_5303_tx_1 48 + 307276 307892 . 1 617 0 -chrXI 308286 308662 MC_gene_5562_tx_1 1 - 308286 308662 . 1 377 0 -chrXI 308945 309846 HC_gene_5563_tx_1 5 - 308945 309846 . 1 902 0 -chrXI 308945 309925 HC_gene_5563_tx_2 4 - 308945 309925 . 1 981 0 -chrXI 309060 309925 HC_gene_5563_tx_3 1 - 309060 309925 . 1 866 0 -chrXI 309161 309777 HC_gene_5304_tx_1 286 + 309161 309777 . 1 617 0 -chrXI 309340 309777 HC_gene_5304_tx_2 33 + 309340 309777 . 1 438 0 -chrXI 310078 313140 HC_gene_5305_tx_1 8 + 310078 313140 . 1 3063 0 -chrXI 310078 313243 HC_gene_5305_tx_2 12 + 310078 313243 . 1 3166 0 -chrXI 310078 313243 HC_gene_5305_tx_3 1 + 310078 313243 . 2 180,2908 0,258 -chrXI 310218 313243 HC_gene_5305_tx_4 1 + 310218 313243 . 1 3026 0 -chrXI 313596 314464 MC_gene_5564_tx_1 1 - 313596 314464 . 1 869 0 -chrXI 314335 314683 MC_gene_5565_tx_1 1 - 314335 314683 . 1 349 0 -chrXI 314758 315475 HC_gene_5306_tx_1 545 + 314758 315475 . 1 718 0 -chrXI 314870 315475 HC_gene_5306_tx_2 24 + 314870 315475 . 1 606 0 -chrXI 315052 315475 HC_gene_5306_tx_3 132 + 315052 315475 . 1 424 0 -chrXI 315389 315890 HC_gene_5566_tx_1 6 - 315389 315890 . 1 502 0 -chrXI 315389 316094 HC_gene_5566_tx_2 6 - 315389 316094 . 1 706 0 -chrXI 315615 316244 HC_gene_5307_tx_1 1 + 315615 316244 . 1 630 0 -chrXI 315910 316236 HC_gene_5308_tx_1 1 + 315910 316236 . 1 327 0 -chrXI 315910 316239 HC_gene_5308_tx_2 1 + 315910 316239 . 1 330 0 -chrXI 315910 316246 HC_gene_5308_tx_3 1 + 315910 316246 . 1 337 0 -chrXI 315910 316346 HC_gene_5308_tx_4 5 + 315910 316346 . 1 437 0 -chrXI 316124 316660 HC_gene_5567_tx_1 1 - 316124 316660 . 1 537 0 -chrXI 316124 316803 HC_gene_5567_tx_3 1 - 316124 316803 . 1 680 0 -chrXI 316124 317080 HC_gene_5567_tx_5 8 - 316124 317080 . 1 957 0 -chrXI 316214 316660 HC_gene_5567_tx_2 2 - 316214 316660 . 1 447 0 -chrXI 316214 316803 HC_gene_5567_tx_4 2 - 316214 316803 . 1 590 0 -chrXI 316214 317080 HC_gene_5567_tx_6 7 - 316214 317080 . 1 867 0 -chrXI 316392 316660 HC_gene_5567_tx_7 36 - 316392 316660 . 1 269 0 -chrXI 316392 316660 HC_gene_5567_tx_8 1 - 316392 316660 . 2 74,140 0,129 -chrXI 316392 316803 HC_gene_5567_tx_9 73 - 316392 316803 . 1 412 0 -chrXI 316392 317080 HC_gene_5567_tx_10 258 - 316392 317080 . 1 689 0 -chrXI 316392 317080 HC_gene_5567_tx_11 1 - 316392 317080 . 2 137,492 0,197 -chrXI 316392 317263 HC_gene_5567_tx_12 2 - 316392 317263 . 1 872 0 -chrXI 316392 317356 HC_gene_5567_tx_13 2 - 316392 317356 . 1 965 0 -chrXI 316402 316957 MC_gene_5309_tx_1 1 + 316402 316957 . 1 556 0 -chrXI 316727 317080 HC_gene_5567_tx_14 3 - 316727 317080 . 1 354 0 -chrXI 316727 317356 HC_gene_5567_tx_15 1 - 316727 317356 . 1 630 0 -chrXI 317596 318136 HC_gene_5310_tx_1 3 + 317596 318136 . 1 541 0 -chrXI 319012 320673 HC_gene_5311_tx_1 1 + 319012 320673 . 1 1662 0 -chrXI 319012 320830 HC_gene_5311_tx_2 4 + 319012 320830 . 1 1819 0 -chrXI 319291 320830 HC_gene_5311_tx_3 3 + 319291 320830 . 1 1540 0 -chrXI 319308 321260 HC_gene_5568_tx_1 1 - 319308 321260 . 1 1953 0 -chrXI 319853 320673 HC_gene_5311_tx_4 2 + 319853 320673 . 1 821 0 -chrXI 319853 320830 HC_gene_5311_tx_5 14 + 319853 320830 . 1 978 0 -chrXI 319853 320985 HC_gene_5311_tx_6 1 + 319853 320985 . 1 1133 0 -chrXI 319853 321453 HC_gene_5311_tx_7 1 + 319853 321453 . 1 1601 0 -chrXI 320548 320830 HC_gene_5311_tx_8 5 + 320548 320830 . 1 283 0 -chrXI 320583 321152 HC_gene_5568_tx_2 1 - 320583 321152 . 1 570 0 -chrXI 320583 321515 HC_gene_5568_tx_3 3 - 320583 321515 . 1 933 0 -chrXI 320770 321152 HC_gene_5568_tx_4 4 - 320770 321152 . 1 383 0 -chrXI 320770 321260 HC_gene_5568_tx_5 6 - 320770 321260 . 1 491 0 -chrXI 320770 321515 HC_gene_5568_tx_7 36 - 320770 321515 . 1 746 0 -chrXI 320863 321152 HC_gene_5568_tx_9 11 - 320863 321152 . 1 290 0 -chrXI 320863 321260 HC_gene_5568_tx_6 17 - 320863 321260 . 1 398 0 -chrXI 320863 321515 HC_gene_5568_tx_8 107 - 320863 321515 . 1 653 0 -chrXI 321571 322157 MC_gene_5569_tx_1 1 - 321571 322157 . 1 587 0 -chrXI 321834 323049 MC_gene_5312_tx_1 1 + 321834 323049 . 1 1216 0 -chrXI 321970 322239 MC_gene_5312_tx_2 1 + 321970 322239 . 1 270 0 -chrXI 323122 325323 HC_gene_5313_tx_1 12 + 323122 325323 . 1 2202 0 -chrXI 323122 325545 HC_gene_5313_tx_2 24 + 323122 325545 . 1 2424 0 -chrXI 323122 325545 HC_gene_5313_tx_3 1 + 323122 325545 . 2 325,1708 0,716 -chrXI 323122 325545 HC_gene_5313_tx_4 1 + 323122 325545 . 2 1034,1262 0,1162 -chrXI 323447 325323 HC_gene_5313_tx_5 2 + 323447 325323 . 1 1877 0 -chrXI 323447 325545 HC_gene_5313_tx_6 2 + 323447 325545 . 1 2099 0 -chrXI 323547 325323 HC_gene_5313_tx_7 1 + 323547 325323 . 1 1777 0 -chrXI 323547 325545 HC_gene_5313_tx_8 2 + 323547 325545 . 1 1999 0 -chrXI 323627 325323 HC_gene_5313_tx_9 2 + 323627 325323 . 1 1697 0 -chrXI 323627 325545 HC_gene_5313_tx_10 2 + 323627 325545 . 1 1919 0 -chrXI 324022 325323 HC_gene_5313_tx_11 2 + 324022 325323 . 1 1302 0 -chrXI 324022 325545 HC_gene_5313_tx_12 3 + 324022 325545 . 1 1524 0 -chrXI 324022 325545 HC_gene_5313_tx_13 1 + 324022 325545 . 2 599,689 0,835 -chrXI 324166 325323 HC_gene_5313_tx_14 1 + 324166 325323 . 1 1158 0 -chrXI 324166 325545 HC_gene_5313_tx_15 6 + 324166 325545 . 1 1380 0 -chrXI 324516 325323 HC_gene_5313_tx_16 1 + 324516 325323 . 1 808 0 -chrXI 324516 325545 HC_gene_5313_tx_17 4 + 324516 325545 . 1 1030 0 -chrXI 325753 326276 HC_gene_5314_tx_1 29 + 325753 326276 . 1 524 0 -chrXI 325753 326360 HC_gene_5314_tx_2 90 + 325753 326360 . 1 608 0 -chrXI 325962 327510 HC_gene_5570_tx_1 25 - 325962 327510 . 1 1549 0 -chrXI 325981 326276 HC_gene_5314_tx_3 2 + 325981 326276 . 1 296 0 -chrXI 325981 326360 HC_gene_5314_tx_4 12 + 325981 326360 . 1 380 0 -chrXI 326203 327510 HC_gene_5570_tx_2 6 - 326203 327510 . 1 1308 0 -chrXI 326326 326689 HC_gene_5570_tx_4 1018 - 326326 326689 . 1 364 0 -chrXI 326326 326806 HC_gene_5570_tx_5 646 - 326326 326806 . 1 481 0 -chrXI 326326 326932 HC_gene_5570_tx_6 1695 - 326326 326932 . 1 607 0 -chrXI 326326 327229 HC_gene_5570_tx_7 2829 - 326326 327229 . 1 904 0 -chrXI 326326 327510 HC_gene_5570_tx_3 8554 - 326326 327510 . 1 1185 0 -chrXI 327665 328114 LC_gene_5315_tx_1 1 + 327665 328114 . 1 450 0 -chrXI 328018 329514 HC_gene_5571_tx_1 30 - 328018 329514 . 1 1497 0 -chrXI 328146 328583 HC_gene_5316_tx_1 2 + 328146 328583 . 1 438 0 -chrXI 328905 329160 LC_gene_5317_tx_1 1 + 328905 329160 . 1 256 0 -chrXI 330135 330794 HC_gene_5318_tx_1 298 + 330135 330794 . 1 660 0 -chrXI 330797 334000 HC_gene_5572_tx_1 9 - 330797 334000 . 1 3204 0 -chrXI 331321 334000 HC_gene_5572_tx_2 1 - 331321 334000 . 1 2680 0 -chrXI 331935 334000 HC_gene_5572_tx_3 1 - 331935 334000 . 1 2066 0 -chrXI 334310 334800 HC_gene_5573_tx_1 292 - 334310 334800 . 1 491 0 -chrXI 334310 334955 HC_gene_5573_tx_2 4381 - 334310 334955 . 1 646 0 -chrXI 335566 336407 LC_gene_5319_tx_1 1 + 335566 336407 . 1 842 0 -chrXI 336321 336736 HC_gene_5574_tx_1 55 - 336321 336736 . 1 416 0 -chrXI 336321 336805 HC_gene_5574_tx_2 11 - 336321 336805 . 1 485 0 -chrXI 336321 336898 HC_gene_5574_tx_3 91 - 336321 336898 . 1 578 0 -chrXI 336321 337064 HC_gene_5574_tx_4 68 - 336321 337064 . 1 744 0 -chrXI 336321 337064 HC_gene_5574_tx_5 1 - 336321 337064 . 2 164,502 0,242 -chrXI 336321 337156 HC_gene_5574_tx_6 19 - 336321 337156 . 1 836 0 -chrXI 336321 337252 HC_gene_5574_tx_7 1 - 336321 337252 . 2 572,285 0,647 -chrXI 336321 337252 HC_gene_5574_tx_8 31 - 336321 337252 . 1 932 0 -chrXI 336321 337252 HC_gene_5574_tx_9 1 - 336321 337252 . 2 715,171 0,761 -chrXI 336321 337320 HC_gene_5574_tx_10 27 - 336321 337320 . 1 1000 0 -chrXI 336321 337446 HC_gene_5574_tx_11 1 - 336321 337446 . 2 648,389 0,737 -chrXI 336321 337478 HC_gene_5574_tx_12 1 - 336321 337478 . 2 509,421 0,737 -chrXI 336321 337652 HC_gene_5574_tx_13 1 - 336321 337652 . 2 474,743 0,589 -chrXI 336321 337652 HC_gene_5574_tx_14 117 - 336321 337652 . 1 1332 0 -chrXI 336321 337652 HC_gene_5574_tx_15 1 - 336321 337652 . 2 686,466 0,866 -chrXI 336321 337850 HC_gene_5574_tx_16 1 - 336321 337850 . 1 1530 0 -chrXI 336321 337991 HC_gene_5574_tx_17 1 - 336321 337991 . 3 1190,2,261 0,1280,1410 -chrXI 336321 337991 HC_gene_5574_tx_18 1 - 336321 337991 . 2 955,373 0,1298 -chrXI 336321 337991 HC_gene_5574_tx_19 19 - 336321 337991 . 1 1671 0 -chrXI 336321 337991 HC_gene_5574_tx_20 1 - 336321 337991 . 2 1065,498 0,1173 -chrXI 336321 337991 HC_gene_5574_tx_21 1 - 336321 337991 . 2 1363,214 0,1457 -chrXI 336321 338312 HC_gene_5574_tx_22 32 - 336321 338312 . 1 1992 0 -chrXI 336321 338312 HC_gene_5574_tx_23 1 - 336321 338312 . 3 1283,186,319 0,1410,1673 -chrXI 336321 338312 HC_gene_5574_tx_24 1 - 336321 338312 . 2 739,688 0,1304 -chrXI 336321 338312 HC_gene_5574_tx_25 1 - 336321 338312 . 2 715,1126 0,866 -chrXI 336321 338312 HC_gene_5574_tx_26 1 - 336321 338312 . 2 627,1291 0,701 -chrXI 336321 338312 HC_gene_5574_tx_27 1 - 336321 338312 . 2 1152,788 0,1204 -chrXI 336321 338312 HC_gene_5574_tx_28 1 - 336321 338312 . 2 504,355 0,1637 -chrXI 336321 338312 HC_gene_5574_tx_29 1 - 336321 338312 . 2 750,582 0,1410 -chrXI 336321 338312 HC_gene_5574_tx_30 1 - 336321 338312 . 2 983,694 0,1298 -chrXI 336321 338312 HC_gene_5574_tx_31 1 - 336321 338312 . 2 1230,287 0,1705 -chrXI 336321 338528 HC_gene_5574_tx_32 6 - 336321 338528 . 1 2208 0 -chrXI 336321 338528 HC_gene_5574_tx_33 1 - 336321 338528 . 2 1890,238 0,1970 -chrXI 336321 338528 HC_gene_5574_tx_34 1 - 336321 338528 . 2 995,1035 0,1173 -chrXI 336321 338691 HC_gene_5574_tx_35 2 - 336321 338691 . 1 2371 0 -chrXI 336321 338691 HC_gene_5574_tx_36 1 - 336321 338691 . 2 1005,1275 0,1096 -chrXI 336321 338851 HC_gene_5574_tx_37 24 - 336321 338851 . 1 2531 0 -chrXI 336321 338851 HC_gene_5574_tx_38 1 - 336321 338851 . 2 976,801 0,1730 -chrXI 336321 338851 HC_gene_5574_tx_39 1 - 336321 338851 . 2 1576,597 0,1934 -chrXI 336321 338851 HC_gene_5574_tx_40 1 - 336321 338851 . 2 2015,312 0,2219 -chrXI 336321 338851 HC_gene_5574_tx_41 1 - 336321 338851 . 2 1109,1358 0,1173 -chrXI 336321 338851 HC_gene_5574_tx_42 1 - 336321 338851 . 2 1217,1259 0,1272 -chrXI 336321 338851 HC_gene_5574_tx_43 1 - 336321 338851 . 2 2001,284 0,2247 -chrXI 336321 338851 HC_gene_5574_tx_44 1 - 336321 338851 . 2 1363,1074 0,1457 -chrXI 336321 338851 HC_gene_5574_tx_45 1 - 336321 338851 . 2 714,858 0,1673 -chrXI 336321 338851 HC_gene_5574_tx_46 1 - 336321 338851 . 2 699,921 0,1610 -chrXI 336321 338851 HC_gene_5574_tx_47 1 - 336321 338851 . 2 1043,1358 0,1173 -chrXI 336321 338851 HC_gene_5574_tx_48 1 - 336321 338851 . 2 1721,741 0,1790 -chrXI 336321 338851 HC_gene_5574_tx_49 1 - 336321 338851 . 2 1158,1270 0,1261 -chrXI 336321 338851 HC_gene_5574_tx_50 1 - 336321 338851 . 2 1615,352 0,2179 -chrXI 338432 338851 HC_gene_5574_tx_51 9 - 338432 338851 . 1 420 0 -chrXI 338561 338758 HC_gene_5574_tx_52 1 - 338561 338758 . 1 198 0 -chrXI 338561 338851 HC_gene_5574_tx_53 9 - 338561 338851 . 1 291 0 -chrXI 338656 338808 HC_gene_5574_tx_54 1 - 338656 338808 . 1 153 0 -chrXI 338656 338851 HC_gene_5574_tx_55 2 - 338656 338851 . 1 196 0 -chrXI 339066 339516 HC_gene_5575_tx_1 301 - 339066 339516 . 1 451 0 -chrXI 339164 339711 HC_gene_5320_tx_1 9 + 339164 339711 . 1 548 0 -chrXI 339164 339711 HC_gene_5320_tx_2 1 + 339164 339711 . 2 296,189 0,359 -chrXI 339594 339923 HC_gene_5576_tx_1 1 - 339594 339923 . 1 330 0 -chrXI 339594 340176 HC_gene_5576_tx_2 6 - 339594 340176 . 1 583 0 -chrXI 339594 340238 HC_gene_5576_tx_3 17 - 339594 340238 . 1 645 0 -chrXI 339594 340568 HC_gene_5576_tx_4 74 - 339594 340568 . 1 975 0 -chrXI 339594 340568 HC_gene_5576_tx_5 1 - 339594 340568 . 2 318,584 0,391 -chrXI 339594 340568 HC_gene_5576_tx_6 1 - 339594 340568 . 2 660,188 0,787 -chrXI 339594 340568 HC_gene_5576_tx_7 1 - 339594 340568 . 2 592,206 0,769 -chrXI 339594 340816 HC_gene_5576_tx_8 4 - 339594 340816 . 1 1223 0 -chrXI 339594 341067 HC_gene_5576_tx_9 3 - 339594 341067 . 1 1474 0 -chrXI 340869 341308 HC_gene_5321_tx_1 1 + 340869 341308 . 1 440 0 -chrXI 340898 341227 HC_gene_5321_tx_4 11 + 340898 341227 . 1 330 0 -chrXI 340898 341321 HC_gene_5321_tx_2 1 + 340898 341321 . 1 424 0 -chrXI 340898 341325 HC_gene_5321_tx_3 1 + 340898 341325 . 1 428 0 -chrXI 341160 342102 HC_gene_5577_tx_1 1 - 341160 342102 . 1 943 0 -chrXI 341290 342712 HC_gene_5322_tx_1 34 + 341290 342712 . 1 1423 0 -chrXI 341290 342712 HC_gene_5322_tx_2 1 + 341290 342712 . 2 414,933 0,490 -chrXI 341290 342796 HC_gene_5322_tx_3 54 + 341290 342796 . 1 1507 0 -chrXI 341290 342796 HC_gene_5322_tx_4 1 + 341290 342796 . 2 325,841 0,666 -chrXI 341290 342796 HC_gene_5322_tx_5 1 + 341290 342796 . 2 92,1042 0,465 -chrXI 341290 342796 HC_gene_5322_tx_6 1 + 341290 342796 . 2 73,831 0,676 -chrXI 342292 342712 HC_gene_5322_tx_7 5 + 342292 342712 . 1 421 0 -chrXI 342292 342796 HC_gene_5322_tx_8 10 + 342292 342796 . 1 505 0 -chrXI 342367 342712 HC_gene_5322_tx_9 15 + 342367 342712 . 1 346 0 -chrXI 342367 342796 HC_gene_5322_tx_10 18 + 342367 342796 . 1 430 0 -chrXI 342367 342796 HC_gene_5322_tx_11 1 + 342367 342796 . 2 28,347 0,83 -chrXI 342652 346809 HC_gene_5578_tx_1 1 - 342652 346809 . 1 4158 0 -chrXI 345964 346809 HC_gene_5578_tx_2 32 - 345964 346809 . 1 846 0 -chrXI 346995 349127 HC_gene_5579_tx_1 1 - 346995 349127 . 2 1383,700 0,1433 -chrXI 346995 349222 HC_gene_5579_tx_2 3 - 346995 349222 . 1 2228 0 -chrXI 347029 347275 MC_gene_5323_tx_1 1 + 347029 347275 . 1 247 0 -chrXI 349246 350083 LC_gene_5580_tx_1 1 - 349246 350083 . 1 838 0 -chrXI 349434 351121 HC_gene_5324_tx_1 21 + 349434 351121 . 1 1688 0 -chrXI 350361 351121 HC_gene_5324_tx_2 5 + 350361 351121 . 1 761 0 -chrXI 350721 351121 HC_gene_5324_tx_3 4 + 350721 351121 . 1 401 0 -chrXI 350976 351469 HC_gene_5581_tx_1 1 - 350976 351469 . 1 494 0 -chrXI 350976 352832 HC_gene_5581_tx_3 2 - 350976 352832 . 1 1857 0 -chrXI 351038 351469 HC_gene_5581_tx_2 25 - 351038 351469 . 1 432 0 -chrXI 351038 351595 HC_gene_5581_tx_10 18 - 351038 351595 . 1 558 0 -chrXI 351038 352257 HC_gene_5581_tx_4 11 - 351038 352257 . 1 1220 0 -chrXI 351038 352404 HC_gene_5581_tx_5 5 - 351038 352404 . 1 1367 0 -chrXI 351038 352633 HC_gene_5581_tx_6 9 - 351038 352633 . 1 1596 0 -chrXI 351038 352832 HC_gene_5581_tx_7 43 - 351038 352832 . 1 1795 0 -chrXI 351038 352832 HC_gene_5581_tx_8 1 - 351038 352832 . 2 772,161 0,1634 -chrXI 351038 353179 HC_gene_5581_tx_9 1 - 351038 353179 . 1 2142 0 -chrXI 353004 355315 LC_gene_5582_tx_1 1 - 353004 355315 . 1 2312 0 -chrXI 353425 355220 HC_gene_5325_tx_1 25 + 353425 355220 . 1 1796 0 -chrXI 354122 355220 HC_gene_5325_tx_2 13 + 354122 355220 . 1 1099 0 -chrXI 354775 355220 HC_gene_5325_tx_3 7 + 354775 355220 . 1 446 0 -chrXI 356286 358040 HC_gene_5326_tx_1 1 + 356286 358040 . 1 1755 0 -chrXI 356476 358040 HC_gene_5326_tx_2 59 + 356476 358040 . 1 1565 0 -chrXI 356559 358040 HC_gene_5326_tx_3 13 + 356559 358040 . 1 1482 0 -chrXI 356771 358040 HC_gene_5326_tx_4 10 + 356771 358040 . 1 1270 0 -chrXI 357930 358134 MC_gene_5583_tx_1 1 - 357930 358134 . 1 205 0 -chrXI 358336 359763 HC_gene_5327_tx_1 31 + 358336 359763 . 1 1428 0 -chrXI 358600 359763 HC_gene_5327_tx_2 5 + 358600 359763 . 1 1164 0 -chrXI 360013 361431 HC_gene_5584_tx_1 1 - 360013 361431 . 1 1419 0 -chrXI 360013 361857 HC_gene_5584_tx_2 1 - 360013 361857 . 1 1845 0 -chrXI 360048 360879 HC_gene_5328_tx_1 3 + 360048 360879 . 1 832 0 -chrXI 360048 360880 HC_gene_5328_tx_2 3 + 360048 360880 . 1 833 0 -chrXI 360048 360881 HC_gene_5328_tx_3 2 + 360048 360881 . 1 834 0 -chrXI 360048 360882 HC_gene_5328_tx_4 1 + 360048 360882 . 1 835 0 -chrXI 360048 360883 HC_gene_5328_tx_5 1 + 360048 360883 . 1 836 0 -chrXI 360048 360884 HC_gene_5328_tx_6 1 + 360048 360884 . 1 837 0 -chrXI 360048 360886 HC_gene_5328_tx_7 1 + 360048 360886 . 1 839 0 -chrXI 360048 360887 HC_gene_5328_tx_8 1 + 360048 360887 . 1 840 0 -chrXI 360048 360888 HC_gene_5328_tx_9 10 + 360048 360888 . 1 841 0 -chrXI 360048 360889 HC_gene_5328_tx_10 10 + 360048 360889 . 1 842 0 -chrXI 360048 360892 HC_gene_5328_tx_11 1 + 360048 360892 . 1 845 0 -chrXI 360048 360897 HC_gene_5328_tx_12 1 + 360048 360897 . 1 850 0 -chrXI 360048 360899 HC_gene_5328_tx_13 1 + 360048 360899 . 1 852 0 -chrXI 360048 360901 HC_gene_5328_tx_14 1 + 360048 360901 . 1 854 0 -chrXI 360048 360902 HC_gene_5328_tx_15 1 + 360048 360902 . 1 855 0 -chrXI 360048 360903 HC_gene_5328_tx_16 1 + 360048 360903 . 1 856 0 -chrXI 360048 360907 HC_gene_5328_tx_17 1 + 360048 360907 . 1 860 0 -chrXI 360048 360908 HC_gene_5328_tx_18 1 + 360048 360908 . 1 861 0 -chrXI 360048 360916 HC_gene_5328_tx_19 1 + 360048 360916 . 1 869 0 -chrXI 360048 360917 HC_gene_5328_tx_20 1 + 360048 360917 . 1 870 0 -chrXI 360048 361040 HC_gene_5328_tx_21 7 + 360048 361040 . 1 993 0 -chrXI 360048 361104 HC_gene_5328_tx_22 10 + 360048 361104 . 1 1057 0 -chrXI 360114 361857 HC_gene_5584_tx_3 1 - 360114 361857 . 2 756,876 0,868 -chrXI 360223 360879 HC_gene_5328_tx_24 2 + 360223 360879 . 1 657 0 -chrXI 360223 360881 HC_gene_5328_tx_25 1 + 360223 360881 . 1 659 0 -chrXI 360223 360883 HC_gene_5328_tx_26 1 + 360223 360883 . 1 661 0 -chrXI 360223 360889 HC_gene_5328_tx_27 1 + 360223 360889 . 1 667 0 -chrXI 360223 360901 HC_gene_5328_tx_28 1 + 360223 360901 . 1 679 0 -chrXI 360223 360903 HC_gene_5328_tx_29 1 + 360223 360903 . 1 681 0 -chrXI 360223 360905 HC_gene_5328_tx_30 1 + 360223 360905 . 1 683 0 -chrXI 360223 361104 HC_gene_5328_tx_23 4 + 360223 361104 . 1 882 0 -chrXI 360345 360882 HC_gene_5328_tx_31 1 + 360345 360882 . 1 538 0 -chrXI 360345 360885 HC_gene_5328_tx_32 1 + 360345 360885 . 1 541 0 -chrXI 360345 360915 HC_gene_5328_tx_33 1 + 360345 360915 . 1 571 0 -chrXI 360483 360879 HC_gene_5328_tx_34 1 + 360483 360879 . 1 397 0 -chrXI 360483 360888 HC_gene_5328_tx_35 1 + 360483 360888 . 1 406 0 -chrXI 360483 360889 HC_gene_5328_tx_36 2 + 360483 360889 . 1 407 0 -chrXI 360483 360909 HC_gene_5328_tx_37 1 + 360483 360909 . 1 427 0 -chrXI 360483 360916 HC_gene_5328_tx_38 1 + 360483 360916 . 1 434 0 -chrXI 360483 360917 HC_gene_5328_tx_39 1 + 360483 360917 . 1 435 0 -chrXI 360483 361040 HC_gene_5328_tx_40 1 + 360483 361040 . 1 558 0 -chrXI 360483 361104 HC_gene_5328_tx_41 3 + 360483 361104 . 1 622 0 -chrXI 360512 361857 HC_gene_5584_tx_4 1 - 360512 361857 . 1 1346 0 -chrXI 360603 360883 HC_gene_5328_tx_44 3 + 360603 360883 . 1 281 0 -chrXI 360603 360888 HC_gene_5328_tx_45 3 + 360603 360888 . 1 286 0 -chrXI 360603 360889 HC_gene_5328_tx_46 2 + 360603 360889 . 1 287 0 -chrXI 360603 360915 HC_gene_5328_tx_47 1 + 360603 360915 . 1 313 0 -chrXI 360603 361040 HC_gene_5328_tx_42 4 + 360603 361040 . 1 438 0 -chrXI 360603 361104 HC_gene_5328_tx_43 4 + 360603 361104 . 1 502 0 -chrXI 360614 361431 HC_gene_5584_tx_13 1 - 360614 361431 . 1 818 0 -chrXI 360614 361857 HC_gene_5584_tx_5 6 - 360614 361857 . 1 1244 0 -chrXI 360805 361431 HC_gene_5584_tx_6 10 - 360805 361431 . 1 627 0 -chrXI 360805 361575 HC_gene_5584_tx_7 9 - 360805 361575 . 1 771 0 -chrXI 360805 361702 HC_gene_5584_tx_8 13 - 360805 361702 . 1 898 0 -chrXI 360805 361857 HC_gene_5584_tx_9 73 - 360805 361857 . 1 1053 0 -chrXI 360805 361857 HC_gene_5584_tx_10 1 - 360805 361857 . 2 246,464 0,589 -chrXI 360805 362366 HC_gene_5584_tx_14 6 - 360805 362366 . 1 1562 0 -chrXI 360952 361431 HC_gene_5584_tx_15 2 - 360952 361431 . 1 480 0 -chrXI 360952 361702 HC_gene_5584_tx_11 1 - 360952 361702 . 1 751 0 -chrXI 360952 361857 HC_gene_5584_tx_12 9 - 360952 361857 . 1 906 0 -chrXI 361820 362351 HC_gene_5584_tx_16 1 - 361820 362351 . 1 532 0 -chrXI 361820 362366 HC_gene_5584_tx_17 3 - 361820 362366 . 1 547 0 -chrXI 362134 364386 HC_gene_5329_tx_1 1 + 362134 364386 . 1 2253 0 -chrXI 362462 364386 HC_gene_5329_tx_2 84 + 362462 364386 . 1 1925 0 -chrXI 362462 364386 HC_gene_5329_tx_3 1 + 362462 364386 . 2 1340,532 0,1393 -chrXI 362462 364386 HC_gene_5329_tx_4 1 + 362462 364386 . 2 960,830 0,1095 -chrXI 362462 364386 HC_gene_5329_tx_5 1 + 362462 364386 . 2 1003,847 0,1078 -chrXI 363549 364386 HC_gene_5329_tx_6 11 + 363549 364386 . 1 838 0 -chrXI 363866 364386 HC_gene_5329_tx_7 17 + 363866 364386 . 1 521 0 -chrXI 364282 365248 HC_gene_5585_tx_1 9 - 364282 365248 . 1 967 0 -chrXI 364282 365248 HC_gene_5585_tx_2 1 - 364282 365248 . 2 267,643 0,324 -chrXI 364659 365349 MC_gene_5330_tx_1 1 + 364659 365349 . 1 691 0 -chrXI 365369 369309 HC_gene_5331_tx_1 2 + 365369 369309 . 1 3941 0 -chrXI 366982 369309 HC_gene_5331_tx_2 1 + 366982 369309 . 1 2328 0 -chrXI 368286 369171 LC_gene_5586_tx_1 1 - 368286 369171 . 1 886 0 -chrXI 369197 369560 HC_gene_5587_tx_1 30 - 369197 369560 . 1 364 0 -chrXI 369197 369676 HC_gene_5587_tx_2 2 - 369197 369676 . 1 480 0 -chrXI 369819 371560 HC_gene_5332_tx_1 141 + 369819 371560 . 1 1742 0 -chrXI 369819 371560 HC_gene_5332_tx_2 1 + 369819 371560 . 2 895,761 0,981 -chrXI 369819 371560 HC_gene_5332_tx_3 1 + 369819 371560 . 2 913,757 0,985 -chrXI 369819 371560 HC_gene_5332_tx_4 1 + 369819 371560 . 2 1574,75 0,1667 -chrXI 369819 371560 HC_gene_5332_tx_5 1 + 369819 371560 . 2 1070,605 0,1137 -chrXI 369819 371560 HC_gene_5332_tx_6 1 + 369819 371560 . 2 913,738 0,1004 -chrXI 369819 371560 HC_gene_5332_tx_7 1 + 369819 371560 . 2 913,688 0,1054 -chrXI 369819 371560 HC_gene_5332_tx_8 1 + 369819 371560 . 2 942,746 0,996 -chrXI 369994 371560 HC_gene_5332_tx_9 5 + 369994 371560 . 1 1567 0 -chrXI 370225 371560 HC_gene_5332_tx_10 50 + 370225 371560 . 1 1336 0 -chrXI 370333 371560 HC_gene_5332_tx_11 5 + 370333 371560 . 1 1228 0 -chrXI 370638 371560 HC_gene_5332_tx_12 50 + 370638 371560 . 1 923 0 -chrXI 370638 371560 HC_gene_5332_tx_13 1 + 370638 371560 . 2 419,236 0,687 -chrXI 370734 371560 HC_gene_5332_tx_14 21 + 370734 371560 . 1 827 0 -chrXI 370827 371511 MC_gene_5588_tx_1 1 - 370827 371511 . 1 685 0 -chrXI 371017 371560 HC_gene_5332_tx_15 46 + 371017 371560 . 1 544 0 -chrXI 371283 371560 HC_gene_5332_tx_16 15 + 371283 371560 . 1 278 0 -chrXI 371550 373093 LC_gene_5589_tx_1 1 - 371550 373093 . 1 1544 0 -chrXI 371727 373738 HC_gene_5333_tx_1 1 + 371727 373738 . 1 2012 0 -chrXI 371727 374177 HC_gene_5333_tx_2 15 + 371727 374177 . 1 2451 0 -chrXI 372020 374177 HC_gene_5333_tx_3 3 + 372020 374177 . 1 2158 0 -chrXI 373544 374164 LC_gene_5590_tx_1 1 - 373544 374164 . 1 621 0 -chrXI 374428 375286 HC_gene_5334_tx_1 276 + 374428 375286 . 1 859 0 -chrXI 374428 375359 HC_gene_5334_tx_2 19 + 374428 375359 . 1 932 0 -chrXI 374668 375286 HC_gene_5334_tx_3 12 + 374668 375286 . 1 619 0 -chrXI 374725 375286 HC_gene_5334_tx_4 45 + 374725 375286 . 1 562 0 -chrXI 374725 375359 HC_gene_5334_tx_5 5 + 374725 375359 . 1 635 0 -chrXI 374775 375237 HC_gene_5591_tx_1 2 - 374775 375237 . 1 463 0 -chrXI 375449 378920 HC_gene_5335_tx_1 1 + 375449 378920 . 1 3472 0 -chrXI 375449 378986 HC_gene_5335_tx_2 1 + 375449 378986 . 1 3538 0 -chrXI 375449 379014 HC_gene_5335_tx_3 1 + 375449 379014 . 1 3566 0 -chrXI 375449 379030 HC_gene_5335_tx_4 1 + 375449 379030 . 1 3582 0 -chrXI 375449 379187 HC_gene_5335_tx_5 1 + 375449 379187 . 3 1184,1270,1121 0,1250,2618 -chrXI 378914 379507 LC_gene_5592_tx_1 1 - 378914 379507 . 1 594 0 -chrXI 379900 380019 MC_gene_5336_tx_1 1 + 379900 380019 . 1 120 0 -chrXI 379906 380378 HC_gene_5593_tx_1 33 - 379906 380378 . 1 473 0 -chrXI 379906 380663 HC_gene_5593_tx_2 12 - 379906 380663 . 1 758 0 -chrXI 379906 380841 HC_gene_5593_tx_3 7 - 379906 380841 . 1 936 0 -chrXI 379906 381066 HC_gene_5593_tx_4 8 - 379906 381066 . 1 1161 0 -chrXI 379906 381289 HC_gene_5593_tx_5 9 - 379906 381289 . 1 1384 0 -chrXI 379906 381416 HC_gene_5593_tx_6 4 - 379906 381416 . 1 1511 0 -chrXI 379906 381416 HC_gene_5593_tx_7 1 - 379906 381416 . 2 301,1152 0,359 -chrXI 379906 381560 HC_gene_5593_tx_8 3 - 379906 381560 . 1 1655 0 -chrXI 379906 381663 HC_gene_5593_tx_9 1 - 379906 381663 . 2 930,533 0,1225 -chrXI 379906 381663 HC_gene_5593_tx_10 4 - 379906 381663 . 1 1758 0 -chrXI 379906 381663 HC_gene_5593_tx_11 1 - 379906 381663 . 2 702,870 0,888 -chrXI 379906 381663 HC_gene_5593_tx_12 1 - 379906 381663 . 2 1366,287 0,1471 -chrXI 379906 381770 HC_gene_5593_tx_13 1 - 379906 381770 . 1 1865 0 -chrXI 379906 381953 HC_gene_5593_tx_14 14 - 379906 381953 . 1 2048 0 -chrXI 379906 381953 HC_gene_5593_tx_15 1 - 379906 381953 . 2 1817,170 0,1878 -chrXI 379906 382040 HC_gene_5593_tx_16 1 - 379906 382040 . 1 2135 0 -chrXI 379906 382040 HC_gene_5593_tx_17 1 - 379906 382040 . 2 1679,219 0,1916 -chrXI 381554 382649 MC_gene_5337_tx_1 1 + 381554 382649 . 1 1096 0 -chrXI 382587 382859 HC_gene_5594_tx_1 8 - 382587 382859 . 1 273 0 -chrXI 382587 382987 HC_gene_5594_tx_2 12 - 382587 382987 . 1 401 0 -chrXI 382587 383385 HC_gene_5594_tx_3 11 - 382587 383385 . 1 799 0 -chrXI 382587 383816 HC_gene_5594_tx_4 5 - 382587 383816 . 1 1230 0 -chrXI 382587 383816 HC_gene_5594_tx_5 1 - 382587 383816 . 2 675,497 0,733 -chrXI 382587 383995 HC_gene_5594_tx_6 4 - 382587 383995 . 1 1409 0 -chrXI 382587 384360 HC_gene_5594_tx_7 6 - 382587 384360 . 1 1774 0 -chrXI 382587 384535 HC_gene_5594_tx_8 5 - 382587 384535 . 1 1949 0 -chrXI 382587 384633 HC_gene_5594_tx_9 3 - 382587 384633 . 1 2047 0 -chrXI 382587 384763 HC_gene_5594_tx_10 43 - 382587 384763 . 1 2177 0 -chrXI 382587 384763 HC_gene_5594_tx_11 1 - 382587 384763 . 2 1641,434 0,1743 -chrXI 382587 384763 HC_gene_5594_tx_12 1 - 382587 384763 . 2 953,1164 0,1013 -chrXI 382587 384763 HC_gene_5594_tx_13 1 - 382587 384763 . 2 924,1140 0,1037 -chrXI 383661 383966 LC_gene_5338_tx_1 1 + 383661 383966 . 1 306 0 -chrXI 384716 385047 HC_gene_5595_tx_1 2 - 384716 385047 . 1 332 0 -chrXI 385713 387444 HC_gene_5339_tx_1 1 + 385713 387444 . 1 1732 0 -chrXI 385713 387454 HC_gene_5339_tx_2 1 + 385713 387454 . 1 1742 0 -chrXI 385713 387455 HC_gene_5339_tx_3 1 + 385713 387455 . 1 1743 0 -chrXI 385713 387456 HC_gene_5339_tx_4 1 + 385713 387456 . 1 1744 0 -chrXI 385713 387461 HC_gene_5339_tx_5 2 + 385713 387461 . 1 1749 0 -chrXI 385713 387472 HC_gene_5339_tx_6 1 + 385713 387472 . 1 1760 0 -chrXI 385713 387473 HC_gene_5339_tx_7 1 + 385713 387473 . 1 1761 0 -chrXI 385713 387475 HC_gene_5339_tx_8 1 + 385713 387475 . 1 1763 0 -chrXI 385713 387477 HC_gene_5339_tx_9 1 + 385713 387477 . 1 1765 0 -chrXI 385713 387483 HC_gene_5339_tx_10 1 + 385713 387483 . 1 1771 0 -chrXI 385713 387485 HC_gene_5339_tx_11 1 + 385713 387485 . 1 1773 0 -chrXI 385713 387486 HC_gene_5339_tx_12 1 + 385713 387486 . 1 1774 0 -chrXI 385713 387487 HC_gene_5339_tx_13 3 + 385713 387487 . 1 1775 0 -chrXI 385713 387489 HC_gene_5339_tx_14 1 + 385713 387489 . 1 1777 0 -chrXI 385713 387491 HC_gene_5339_tx_15 1 + 385713 387491 . 1 1779 0 -chrXI 385713 387502 HC_gene_5339_tx_16 4 + 385713 387502 . 1 1790 0 -chrXI 385713 387503 HC_gene_5339_tx_17 1 + 385713 387503 . 2 1138,585 0,1206 -chrXI 385713 387515 HC_gene_5339_tx_18 1 + 385713 387515 . 2 1138,611 0,1192 -chrXI 385727 387515 HC_gene_5339_tx_19 1 + 385727 387515 . 1 1789 0 -chrXI 385728 387506 HC_gene_5339_tx_20 1 + 385728 387506 . 1 1779 0 -chrXI 385732 387512 HC_gene_5339_tx_21 1 + 385732 387512 . 1 1781 0 -chrXI 385734 387510 HC_gene_5339_tx_22 1 + 385734 387510 . 1 1777 0 -chrXI 385740 387509 HC_gene_5339_tx_23 1 + 385740 387509 . 1 1770 0 -chrXI 385743 387512 HC_gene_5339_tx_24 1 + 385743 387512 . 1 1770 0 -chrXI 385814 387482 HC_gene_5339_tx_25 1 + 385814 387482 . 1 1669 0 -chrXI 385814 387497 HC_gene_5339_tx_26 1 + 385814 387497 . 1 1684 0 -chrXI 385922 387484 HC_gene_5339_tx_27 1 + 385922 387484 . 1 1563 0 -chrXI 386447 387496 HC_gene_5340_tx_1 1 + 386447 387496 . 1 1050 0 -chrXI 386447 387497 HC_gene_5340_tx_2 1 + 386447 387497 . 1 1051 0 -chrXI 386447 387514 HC_gene_5340_tx_3 1 + 386447 387514 . 2 897,105 0,963 -chrXI 386580 387443 HC_gene_5340_tx_4 1 + 386580 387443 . 1 864 0 -chrXI 386580 387485 HC_gene_5340_tx_5 1 + 386580 387485 . 1 906 0 -chrXI 386580 387501 HC_gene_5340_tx_6 1 + 386580 387501 . 1 922 0 -chrXI 386590 387517 HC_gene_5340_tx_7 1 + 386590 387517 . 1 928 0 -chrXI 386593 387515 HC_gene_5340_tx_8 1 + 386593 387515 . 1 923 0 -chrXI 386663 387215 MC_gene_5596_tx_1 1 - 386663 387215 . 1 553 0 -chrXI 386691 387485 HC_gene_5340_tx_9 1 + 386691 387485 . 1 795 0 -chrXI 386691 387487 HC_gene_5340_tx_10 1 + 386691 387487 . 1 797 0 -chrXI 386691 387496 HC_gene_5340_tx_11 1 + 386691 387496 . 1 806 0 -chrXI 386825 387444 HC_gene_5340_tx_12 1 + 386825 387444 . 1 620 0 -chrXI 386825 387461 HC_gene_5340_tx_13 1 + 386825 387461 . 1 637 0 -chrXI 386825 387462 HC_gene_5340_tx_14 1 + 386825 387462 . 1 638 0 -chrXI 386825 387463 HC_gene_5340_tx_15 1 + 386825 387463 . 1 639 0 -chrXI 386825 387465 HC_gene_5340_tx_16 1 + 386825 387465 . 1 641 0 -chrXI 386825 387477 HC_gene_5340_tx_17 1 + 386825 387477 . 1 653 0 -chrXI 386825 387487 HC_gene_5340_tx_18 2 + 386825 387487 . 1 663 0 -chrXI 386825 387498 HC_gene_5340_tx_19 1 + 386825 387498 . 1 674 0 -chrXI 386825 387500 HC_gene_5340_tx_20 1 + 386825 387500 . 1 676 0 -chrXI 386825 387501 HC_gene_5340_tx_21 1 + 386825 387501 . 1 677 0 -chrXI 386825 387502 HC_gene_5340_tx_22 1 + 386825 387502 . 1 678 0 -chrXI 386890 387472 HC_gene_5340_tx_23 1 + 386890 387472 . 1 583 0 -chrXI 386890 387477 HC_gene_5340_tx_24 1 + 386890 387477 . 1 588 0 -chrXI 386890 387487 HC_gene_5340_tx_25 1 + 386890 387487 . 1 598 0 -chrXI 386890 387501 HC_gene_5340_tx_26 1 + 386890 387501 . 1 612 0 -chrXI 387435 388203 MC_gene_5597_tx_1 1 - 387435 388203 . 1 769 0 -chrXI 387504 389013 HC_gene_5341_tx_1 44 + 387504 389013 . 1 1510 0 -chrXI 387504 389013 HC_gene_5341_tx_2 1 + 387504 389013 . 2 769,689 0,821 -chrXI 387504 389138 HC_gene_5341_tx_3 7 + 387504 389138 . 1 1635 0 -chrXI 387504 389138 HC_gene_5341_tx_4 1 + 387504 389138 . 2 1451,88 0,1547 -chrXI 389121 389543 HC_gene_5598_tx_1 9 - 389121 389543 . 1 423 0 -chrXI 389121 389668 HC_gene_5598_tx_2 5 - 389121 389668 . 1 548 0 -chrXI 389121 389845 HC_gene_5598_tx_3 5 - 389121 389845 . 1 725 0 -chrXI 389121 389995 HC_gene_5598_tx_4 20 - 389121 389995 . 1 875 0 -chrXI 389252 389902 MC_gene_5342_tx_1 1 + 389252 389902 . 1 651 0 -chrXI 389949 390332 HC_gene_5343_tx_1 4 + 389949 390332 . 1 384 0 -chrXI 390179 392314 HC_gene_5599_tx_1 13 - 390179 392314 . 1 2136 0 -chrXI 390179 392314 HC_gene_5599_tx_2 1 - 390179 392314 . 2 1817,258 0,1878 -chrXI 392422 392831 HC_gene_5600_tx_1 20 - 392422 392831 . 1 410 0 -chrXI 392422 392978 HC_gene_5600_tx_2 34 - 392422 392978 . 1 557 0 -chrXI 392422 393170 HC_gene_5600_tx_3 13 - 392422 393170 . 1 749 0 -chrXI 392422 393366 HC_gene_5600_tx_4 170 - 392422 393366 . 1 945 0 -chrXI 393688 394707 HC_gene_5344_tx_1 11 + 393688 394707 . 1 1020 0 -chrXI 393688 394708 HC_gene_5344_tx_2 1 + 393688 394708 . 1 1021 0 -chrXI 393688 394713 HC_gene_5344_tx_3 1 + 393688 394713 . 1 1026 0 -chrXI 393688 394717 HC_gene_5344_tx_4 1 + 393688 394717 . 1 1030 0 -chrXI 393688 394719 HC_gene_5344_tx_5 1 + 393688 394719 . 1 1032 0 -chrXI 393688 394741 HC_gene_5344_tx_6 1 + 393688 394741 . 1 1054 0 -chrXI 393688 394755 HC_gene_5344_tx_7 1 + 393688 394755 . 1 1068 0 -chrXI 393688 394755 HC_gene_5344_tx_8 1 + 393688 394755 . 2 790,228 0,840 -chrXI 393688 394757 HC_gene_5344_tx_9 1 + 393688 394757 . 1 1070 0 -chrXI 393688 394765 HC_gene_5344_tx_10 1 + 393688 394765 . 1 1078 0 -chrXI 393688 394768 HC_gene_5344_tx_11 1 + 393688 394768 . 1 1081 0 -chrXI 393688 394769 HC_gene_5344_tx_12 1 + 393688 394769 . 1 1082 0 -chrXI 393688 394771 HC_gene_5344_tx_13 2 + 393688 394771 . 1 1084 0 -chrXI 393688 394796 HC_gene_5344_tx_14 2 + 393688 394796 . 1 1109 0 -chrXI 393688 394797 HC_gene_5344_tx_15 1 + 393688 394797 . 1 1110 0 -chrXI 393688 394798 HC_gene_5344_tx_16 1 + 393688 394798 . 1 1111 0 -chrXI 393688 394801 HC_gene_5344_tx_17 1 + 393688 394801 . 1 1114 0 -chrXI 393688 395134 HC_gene_5344_tx_18 6 + 393688 395134 . 1 1447 0 -chrXI 393688 395134 HC_gene_5344_tx_19 1 + 393688 395134 . 2 874,445 0,1002 -chrXI 393688 395134 HC_gene_5344_tx_20 1 + 393688 395134 . 2 750,635 0,812 -chrXI 393688 395134 HC_gene_5344_tx_21 1 + 393688 395134 . 2 898,476 0,971 -chrXI 393688 395242 HC_gene_5344_tx_22 4 + 393688 395242 . 1 1555 0 -chrXI 393688 395912 HC_gene_5344_tx_24 3 + 393688 395912 . 1 2225 0 -chrXI 393964 394771 HC_gene_5344_tx_25 1 + 393964 394771 . 1 808 0 -chrXI 393964 395134 HC_gene_5344_tx_23 2 + 393964 395134 . 1 1171 0 -chrXI 394163 394707 HC_gene_5344_tx_26 1 + 394163 394707 . 1 545 0 -chrXI 394163 394759 HC_gene_5344_tx_27 1 + 394163 394759 . 1 597 0 -chrXI 394163 395796 HC_gene_5344_tx_34 1 + 394163 395796 . 1 1634 0 -chrXI 394218 394707 HC_gene_5344_tx_28 4 + 394218 394707 . 1 490 0 -chrXI 394218 394708 HC_gene_5344_tx_29 1 + 394218 394708 . 1 491 0 -chrXI 394218 394801 HC_gene_5344_tx_30 1 + 394218 394801 . 1 584 0 -chrXI 394218 394802 HC_gene_5344_tx_31 1 + 394218 394802 . 1 585 0 -chrXI 394218 395134 HC_gene_5344_tx_36 3 + 394218 395134 . 1 917 0 -chrXI 394314 394707 HC_gene_5344_tx_32 1 + 394314 394707 . 1 394 0 -chrXI 394314 394801 HC_gene_5344_tx_33 1 + 394314 394801 . 1 488 0 -chrXI 394314 395242 HC_gene_5344_tx_37 1 + 394314 395242 . 1 929 0 -chrXI 394314 395912 HC_gene_5344_tx_35 1 + 394314 395912 . 1 1599 0 -chrXI 394533 397148 HC_gene_5601_tx_1 1 - 394533 397148 . 1 2616 0 -chrXI 394605 397148 HC_gene_5601_tx_2 10 - 394605 397148 . 1 2544 0 -chrXI 397217 397561 HC_gene_5602_tx_1 27 - 397217 397561 . 1 345 0 -chrXI 397217 397938 HC_gene_5602_tx_2 15 - 397217 397938 . 1 722 0 -chrXI 397217 398244 HC_gene_5602_tx_3 13 - 397217 398244 . 1 1028 0 -chrXI 397217 398619 HC_gene_5602_tx_4 93 - 397217 398619 . 1 1403 0 -chrXI 397217 398619 HC_gene_5602_tx_5 1 - 397217 398619 . 2 958,311 0,1092 -chrXI 397217 398619 HC_gene_5602_tx_6 1 - 397217 398619 . 2 79,1250 0,153 -chrXI 397217 398619 HC_gene_5602_tx_7 1 - 397217 398619 . 2 530,130 0,1273 -chrXI 398764 399519 HC_gene_5603_tx_1 7 - 398764 399519 . 1 756 0 -chrXI 398764 399831 HC_gene_5603_tx_2 7 - 398764 399831 . 1 1068 0 -chrXI 398764 399831 HC_gene_5603_tx_3 1 - 398764 399831 . 2 249,756 0,312 -chrXI 398764 401178 HC_gene_5603_tx_4 2 - 398764 401178 . 1 2415 0 -chrXI 398764 401594 HC_gene_5603_tx_5 1 - 398764 401594 . 1 2831 0 -chrXI 398764 402157 HC_gene_5603_tx_6 5 - 398764 402157 . 1 3394 0 -chrXI 398764 402157 HC_gene_5603_tx_7 1 - 398764 402157 . 2 2614,598 0,2796 -chrXI 402356 403601 HC_gene_5345_tx_1 6 + 402356 403601 . 1 1246 0 -chrXI 402542 403601 HC_gene_5345_tx_2 69 + 402542 403601 . 1 1060 0 -chrXI 402542 403601 HC_gene_5345_tx_3 1 + 402542 403601 . 2 295,536 0,524 -chrXI 403407 403601 HC_gene_5345_tx_4 4 + 403407 403601 . 1 195 0 -chrXI 403486 403933 HC_gene_5604_tx_1 219 - 403486 403933 . 1 448 0 -chrXI 403486 404319 HC_gene_5604_tx_2 2 - 403486 404319 . 1 834 0 -chrXI 404076 405243 HC_gene_5346_tx_1 53 + 404076 405243 . 1 1168 0 -chrXI 405080 407250 HC_gene_5605_tx_1 5 - 405080 407250 . 1 2171 0 -chrXI 407367 407870 HC_gene_5606_tx_1 39 - 407367 407870 . 1 504 0 -chrXI 407367 407950 HC_gene_5606_tx_2 22 - 407367 407950 . 1 584 0 -chrXI 407367 408061 HC_gene_5606_tx_3 416 - 407367 408061 . 1 695 0 -chrXI 408445 411588 HC_gene_5347_tx_1 1 + 408445 411588 . 2 1817,1154 0,1990 -chrXI 408445 411588 HC_gene_5347_tx_2 4 + 408445 411588 . 1 3144 0 -chrXI 408445 411588 HC_gene_5347_tx_3 1 + 408445 411588 . 2 1856,1234 0,1910 -chrXI 411420 411897 HC_gene_5607_tx_1 1 - 411420 411897 . 1 478 0 -chrXI 411496 411897 HC_gene_5607_tx_2 1 - 411496 411897 . 1 402 0 -chrXI 411496 412587 HC_gene_5608_tx_1 2 - 411496 412587 . 1 1092 0 -chrXI 411496 416931 HC_gene_5608_tx_4 1 - 411496 416931 . 2 1576,3662 0,1774 -chrXI 411556 411897 HC_gene_5607_tx_3 6 - 411556 411897 . 1 342 0 -chrXI 411556 412587 HC_gene_5608_tx_2 10 - 411556 412587 . 1 1032 0 -chrXI 411556 412839 HC_gene_5608_tx_3 4 - 411556 412839 . 1 1284 0 -chrXI 411556 416931 HC_gene_5608_tx_5 5 - 411556 416931 . 1 5376 0 -chrXI 417177 417452 MC_gene_5348_tx_1 1 + 417177 417452 . 1 276 0 -chrXI 417321 417811 HC_gene_5609_tx_1 27 - 417321 417811 . 1 491 0 -chrXI 417321 418069 HC_gene_5609_tx_2 376 - 417321 418069 . 1 749 0 -chrXI 418249 420157 HC_gene_5349_tx_1 25 + 418249 420157 . 1 1909 0 -chrXI 418249 420157 HC_gene_5349_tx_2 1 + 418249 420157 . 2 1074,765 0,1144 -chrXI 418383 420157 HC_gene_5349_tx_3 3 + 418383 420157 . 1 1775 0 -chrXI 418450 420157 HC_gene_5349_tx_4 3 + 418450 420157 . 1 1708 0 -chrXI 418702 420157 HC_gene_5349_tx_5 1 + 418702 420157 . 1 1456 0 -chrXI 418821 420157 HC_gene_5349_tx_6 3 + 418821 420157 . 1 1337 0 -chrXI 419503 420157 HC_gene_5349_tx_7 8 + 419503 420157 . 1 655 0 -chrXI 420062 420516 HC_gene_5610_tx_1 7 - 420062 420516 . 1 455 0 -chrXI 420062 421220 HC_gene_5610_tx_2 22 - 420062 421220 . 1 1159 0 -chrXI 420062 421220 HC_gene_5610_tx_3 1 - 420062 421220 . 2 893,76 0,1083 -chrXI 421340 421744 HC_gene_5611_tx_1 26 - 421340 421744 . 1 405 0 -chrXI 421340 424756 HC_gene_5611_tx_2 1 - 421340 424756 . 2 2670,653 0,2764 -chrXI 421340 425991 HC_gene_5611_tx_3 4 - 421340 425991 . 1 4652 0 -chrXI 421340 425991 HC_gene_5611_tx_4 1 - 421340 425991 . 2 2993,1599 0,3053 -chrXI 424411 424756 HC_gene_5611_tx_5 1 - 424411 424756 . 1 346 0 -chrXI 426206 427047 HC_gene_5350_tx_1 270 + 426206 427047 . 1 842 0 -chrXI 426429 427047 HC_gene_5350_tx_2 62 + 426429 427047 . 1 619 0 -chrXI 426983 427645 HC_gene_5612_tx_1 5 - 426983 427645 . 1 663 0 -chrXI 426983 427875 HC_gene_5612_tx_18 1 - 426983 427875 . 1 893 0 -chrXI 426983 428396 HC_gene_5612_tx_32 1 - 426983 428396 . 1 1414 0 -chrXI 426983 428593 HC_gene_5612_tx_33 21 - 426983 428593 . 1 1611 0 -chrXI 426983 428593 HC_gene_5612_tx_34 1 - 426983 428593 . 2 945,538 0,1073 -chrXI 426983 428593 HC_gene_5612_tx_35 1 - 426983 428593 . 2 1174,277 0,1334 -chrXI 427039 427645 HC_gene_5612_tx_2 10 - 427039 427645 . 1 607 0 -chrXI 427039 427875 HC_gene_5612_tx_19 3 - 427039 427875 . 1 837 0 -chrXI 427039 428396 HC_gene_5612_tx_36 4 - 427039 428396 . 1 1358 0 -chrXI 427039 428458 HC_gene_5612_tx_37 6 - 427039 428458 . 1 1420 0 -chrXI 427039 428593 HC_gene_5612_tx_38 32 - 427039 428593 . 1 1555 0 -chrXI 427039 428593 HC_gene_5612_tx_39 1 - 427039 428593 . 2 1401,118 0,1437 -chrXI 427039 428593 HC_gene_5612_tx_40 1 - 427039 428593 . 2 491,1017 0,538 -chrXI 427120 428593 HC_gene_5612_tx_41 1 - 427120 428593 . 1 1474 0 -chrXI 427121 428593 HC_gene_5612_tx_42 1 - 427121 428593 . 1 1473 0 -chrXI 427122 428593 HC_gene_5612_tx_43 1 - 427122 428593 . 1 1472 0 -chrXI 427126 428593 HC_gene_5612_tx_44 1 - 427126 428593 . 1 1468 0 -chrXI 427130 428593 HC_gene_5612_tx_45 1 - 427130 428593 . 1 1464 0 -chrXI 427132 428593 HC_gene_5612_tx_46 1 - 427132 428593 . 1 1462 0 -chrXI 427134 428593 HC_gene_5612_tx_47 1 - 427134 428593 . 1 1460 0 -chrXI 427137 428593 HC_gene_5612_tx_48 1 - 427137 428593 . 1 1457 0 -chrXI 427140 428458 HC_gene_5612_tx_49 1 - 427140 428458 . 1 1319 0 -chrXI 427140 428593 HC_gene_5612_tx_50 2 - 427140 428593 . 1 1454 0 -chrXI 427141 428458 HC_gene_5612_tx_51 1 - 427141 428458 . 1 1318 0 -chrXI 427141 428593 HC_gene_5612_tx_52 1 - 427141 428593 . 1 1453 0 -chrXI 427142 428593 HC_gene_5612_tx_53 1 - 427142 428593 . 1 1452 0 -chrXI 427143 428593 HC_gene_5612_tx_54 2 - 427143 428593 . 1 1451 0 -chrXI 427144 427875 HC_gene_5612_tx_20 1 - 427144 427875 . 1 732 0 -chrXI 427144 428593 HC_gene_5612_tx_55 4 - 427144 428593 . 1 1450 0 -chrXI 427145 428593 HC_gene_5612_tx_56 3 - 427145 428593 . 1 1449 0 -chrXI 427146 427875 HC_gene_5612_tx_21 1 - 427146 427875 . 1 730 0 -chrXI 427147 428593 HC_gene_5612_tx_57 1 - 427147 428593 . 1 1447 0 -chrXI 427148 427645 HC_gene_5612_tx_3 1 - 427148 427645 . 1 498 0 -chrXI 427148 428593 HC_gene_5612_tx_58 3 - 427148 428593 . 1 1446 0 -chrXI 427149 427645 HC_gene_5612_tx_4 1 - 427149 427645 . 1 497 0 -chrXI 427149 428593 HC_gene_5612_tx_59 5 - 427149 428593 . 1 1445 0 -chrXI 427150 427645 HC_gene_5612_tx_5 1 - 427150 427645 . 1 496 0 -chrXI 427152 427645 HC_gene_5612_tx_6 1 - 427152 427645 . 1 494 0 -chrXI 427152 428593 HC_gene_5612_tx_60 1 - 427152 428593 . 1 1442 0 -chrXI 427154 428593 HC_gene_5612_tx_61 1 - 427154 428593 . 2 984,178 0,1262 -chrXI 427155 428593 HC_gene_5612_tx_62 1 - 427155 428593 . 1 1439 0 -chrXI 427157 427645 HC_gene_5612_tx_7 2 - 427157 427645 . 1 489 0 -chrXI 427157 428458 HC_gene_5612_tx_63 1 - 427157 428458 . 1 1302 0 -chrXI 427157 428593 HC_gene_5612_tx_64 3 - 427157 428593 . 1 1437 0 -chrXI 427158 428396 HC_gene_5612_tx_65 2 - 427158 428396 . 1 1239 0 -chrXI 427158 428458 HC_gene_5612_tx_66 1 - 427158 428458 . 1 1301 0 -chrXI 427158 428593 HC_gene_5612_tx_67 1 - 427158 428593 . 1 1436 0 -chrXI 427159 427645 HC_gene_5612_tx_8 2 - 427159 427645 . 1 487 0 -chrXI 427159 427875 HC_gene_5612_tx_22 1 - 427159 427875 . 1 717 0 -chrXI 427159 428458 HC_gene_5612_tx_68 1 - 427159 428458 . 1 1300 0 -chrXI 427159 428593 HC_gene_5612_tx_69 5 - 427159 428593 . 1 1435 0 -chrXI 427160 428593 HC_gene_5612_tx_70 3 - 427160 428593 . 1 1434 0 -chrXI 427161 427645 HC_gene_5612_tx_9 2 - 427161 427645 . 1 485 0 -chrXI 427161 427875 HC_gene_5612_tx_23 2 - 427161 427875 . 1 715 0 -chrXI 427161 428396 HC_gene_5612_tx_71 1 - 427161 428396 . 1 1236 0 -chrXI 427161 428593 HC_gene_5612_tx_72 4 - 427161 428593 . 1 1433 0 -chrXI 427162 428396 HC_gene_5612_tx_73 1 - 427162 428396 . 1 1235 0 -chrXI 427162 428593 HC_gene_5612_tx_74 2 - 427162 428593 . 1 1432 0 -chrXI 427163 428593 HC_gene_5612_tx_75 2 - 427163 428593 . 1 1431 0 -chrXI 427164 428593 HC_gene_5612_tx_76 2 - 427164 428593 . 1 1430 0 -chrXI 427167 428593 HC_gene_5612_tx_77 1 - 427167 428593 . 2 543,822 0,605 -chrXI 427169 427645 HC_gene_5612_tx_10 2 - 427169 427645 . 1 477 0 -chrXI 427169 428593 HC_gene_5612_tx_78 1 - 427169 428593 . 1 1425 0 -chrXI 427170 427875 HC_gene_5612_tx_24 1 - 427170 427875 . 1 706 0 -chrXI 427170 428593 HC_gene_5612_tx_79 3 - 427170 428593 . 1 1424 0 -chrXI 427171 427875 HC_gene_5612_tx_25 1 - 427171 427875 . 1 705 0 -chrXI 427171 428593 HC_gene_5612_tx_80 1 - 427171 428593 . 2 694,240 0,1183 -chrXI 427171 428593 HC_gene_5612_tx_81 4 - 427171 428593 . 1 1423 0 -chrXI 427173 428593 HC_gene_5612_tx_82 1 - 427173 428593 . 1 1421 0 -chrXI 427177 428593 HC_gene_5612_tx_83 1 - 427177 428593 . 1 1417 0 -chrXI 427180 427875 HC_gene_5612_tx_26 1 - 427180 427875 . 1 696 0 -chrXI 427180 428593 HC_gene_5612_tx_84 2 - 427180 428593 . 1 1414 0 -chrXI 427181 428593 HC_gene_5612_tx_85 1 - 427181 428593 . 1 1413 0 -chrXI 427182 428593 HC_gene_5612_tx_86 2 - 427182 428593 . 1 1412 0 -chrXI 427185 427875 HC_gene_5612_tx_27 1 - 427185 427875 . 1 691 0 -chrXI 427186 428593 HC_gene_5612_tx_87 1 - 427186 428593 . 1 1408 0 -chrXI 427190 427875 HC_gene_5612_tx_28 1 - 427190 427875 . 1 686 0 -chrXI 427191 427645 HC_gene_5612_tx_11 1 - 427191 427645 . 1 455 0 -chrXI 427211 427645 HC_gene_5612_tx_12 1 - 427211 427645 . 1 435 0 -chrXI 427211 428593 HC_gene_5612_tx_88 2 - 427211 428593 . 1 1383 0 -chrXI 427219 427645 HC_gene_5612_tx_13 1 - 427219 427645 . 1 427 0 -chrXI 427219 428593 HC_gene_5612_tx_89 1 - 427219 428593 . 1 1375 0 -chrXI 427220 428593 HC_gene_5612_tx_90 1 - 427220 428593 . 1 1374 0 -chrXI 427221 427645 HC_gene_5612_tx_14 1 - 427221 427645 . 1 425 0 -chrXI 427221 428593 HC_gene_5612_tx_91 1 - 427221 428593 . 1 1373 0 -chrXI 427222 427645 HC_gene_5612_tx_15 3 - 427222 427645 . 1 424 0 -chrXI 427222 427875 HC_gene_5612_tx_29 1 - 427222 427875 . 1 654 0 -chrXI 427222 428593 HC_gene_5612_tx_92 1 - 427222 428593 . 2 911,240 0,1132 -chrXI 427222 428593 HC_gene_5612_tx_93 4 - 427222 428593 . 1 1372 0 -chrXI 427224 428458 HC_gene_5612_tx_94 1 - 427224 428458 . 1 1235 0 -chrXI 427224 428593 HC_gene_5612_tx_95 1 - 427224 428593 . 2 628,685 0,685 -chrXI 427224 428593 HC_gene_5612_tx_96 1 - 427224 428593 . 1 1370 0 -chrXI 427225 428593 HC_gene_5612_tx_97 2 - 427225 428593 . 1 1369 0 -chrXI 427229 427875 HC_gene_5612_tx_30 1 - 427229 427875 . 1 647 0 -chrXI 427229 428593 HC_gene_5612_tx_98 2 - 427229 428593 . 1 1365 0 -chrXI 427234 428593 HC_gene_5612_tx_99 1 - 427234 428593 . 1 1360 0 -chrXI 427235 427645 HC_gene_5612_tx_16 1 - 427235 427645 . 1 411 0 -chrXI 427235 428458 HC_gene_5612_tx_100 1 - 427235 428458 . 1 1224 0 -chrXI 427235 428593 HC_gene_5612_tx_101 4 - 427235 428593 . 1 1359 0 -chrXI 427236 427875 HC_gene_5612_tx_31 1 - 427236 427875 . 1 640 0 -chrXI 427236 428593 HC_gene_5612_tx_102 3 - 427236 428593 . 1 1358 0 -chrXI 427237 428396 HC_gene_5612_tx_103 1 - 427237 428396 . 1 1160 0 -chrXI 427237 428593 HC_gene_5612_tx_104 3 - 427237 428593 . 1 1357 0 -chrXI 427238 427645 HC_gene_5612_tx_17 1 - 427238 427645 . 1 408 0 -chrXI 427238 428458 HC_gene_5612_tx_105 1 - 427238 428458 . 1 1221 0 -chrXI 427238 428593 HC_gene_5612_tx_106 1 - 427238 428593 . 2 587,619 0,737 -chrXI 427238 428593 HC_gene_5612_tx_107 1 - 427238 428593 . 1 1356 0 -chrXI 429272 430249 HC_gene_5351_tx_1 183 + 429272 430249 . 1 978 0 -chrXI 429518 430249 HC_gene_5351_tx_2 27 + 429518 430249 . 1 732 0 -chrXI 429579 430249 HC_gene_5351_tx_3 12 + 429579 430249 . 1 671 0 -chrXI 429890 430249 HC_gene_5351_tx_4 28 + 429890 430249 . 1 360 0 -chrXI 430072 430436 HC_gene_5613_tx_1 24 - 430072 430436 . 1 365 0 -chrXI 430072 430583 HC_gene_5613_tx_2 6 - 430072 430583 . 1 512 0 -chrXI 430072 430675 HC_gene_5613_tx_3 24 - 430072 430675 . 1 604 0 -chrXI 430072 430675 HC_gene_5613_tx_4 49 - 430072 430675 . 2 384,79 0,525 -chrXI 430072 431132 HC_gene_5613_tx_5 4 - 430072 431132 . 1 1061 0 -chrXI 430072 431132 HC_gene_5613_tx_6 3 - 430072 431132 . 2 384,536 0,525 -chrXI 430072 431304 HC_gene_5613_tx_7 2 - 430072 431304 . 1 1233 0 -chrXI 430603 431132 HC_gene_5613_tx_8 2 - 430603 431132 . 1 530 0 -chrXI 430825 431372 MC_gene_5352_tx_1 1 + 430825 431372 . 1 548 0 -chrXI 430892 431492 MC_gene_5353_tx_1 1 + 430892 431492 . 1 601 0 -chrXI 431886 432812 HC_gene_5354_tx_1 4507 + 431886 432812 . 2 149,380 0,547 -chrXI 431886 432812 HC_gene_5354_tx_2 82 + 431886 432812 . 1 927 0 -chrXI 432529 432812 HC_gene_5354_tx_3 283 + 432529 432812 . 1 284 0 -chrXI 432918 434666 HC_gene_5614_tx_1 5 - 432918 434666 . 1 1749 0 -chrXI 432918 434803 HC_gene_5614_tx_2 2 - 432918 434803 . 1 1886 0 -chrXI 432918 434994 HC_gene_5614_tx_3 26 - 432918 434994 . 1 2077 0 -chrXI 433027 434803 HC_gene_5614_tx_4 1 - 433027 434803 . 1 1777 0 -chrXI 433027 434994 HC_gene_5614_tx_5 9 - 433027 434994 . 1 1968 0 -chrXI 433197 433616 MC_gene_5355_tx_1 1 + 433197 433616 . 1 420 0 -chrXI 435228 436890 HC_gene_5356_tx_1 86 + 435228 436890 . 1 1663 0 -chrXI 435382 436890 HC_gene_5356_tx_2 11 + 435382 436890 . 1 1509 0 -chrXI 435682 436890 HC_gene_5356_tx_3 17 + 435682 436890 . 1 1209 0 -chrXI 436865 437475 HC_gene_5615_tx_1 5 - 436865 437475 . 1 611 0 -chrXI 436995 437265 HC_gene_5615_tx_2 6 - 436995 437265 . 1 271 0 -chrXI 436995 437356 HC_gene_5615_tx_3 7 - 436995 437356 . 1 362 0 -chrXI 436995 437475 HC_gene_5615_tx_4 126 - 436995 437475 . 1 481 0 -chrXI 437700 438601 HC_gene_5357_tx_1 51 + 437700 438601 . 2 138,696 0,206 -chrXI 437700 438601 HC_gene_5357_tx_2 5 + 437700 438601 . 2 138,680 0,222 -chrXI 437700 438601 HC_gene_5357_tx_3 15 + 437700 438601 . 2 138,688 0,214 -chrXI 437700 438601 HC_gene_5357_tx_4 4 + 437700 438601 . 1 902 0 -chrXI 437700 438601 HC_gene_5357_tx_5 1 + 437700 438601 . 2 128,696 0,206 -chrXI 437700 438601 HC_gene_5357_tx_6 1 + 437700 438601 . 2 150,680 0,222 -chrXI 437700 438601 HC_gene_5357_tx_7 1 + 437700 438601 . 2 92,730 0,172 -chrXI 437700 438601 HC_gene_5357_tx_8 1 + 437700 438601 . 2 138,669 0,233 -chrXI 437700 438776 HC_gene_5357_tx_9 20 + 437700 438776 . 2 138,871 0,206 -chrXI 437700 438776 HC_gene_5357_tx_10 3 + 437700 438776 . 2 138,855 0,222 -chrXI 437700 438776 HC_gene_5357_tx_11 1 + 437700 438776 . 1 1077 0 -chrXI 437794 438601 HC_gene_5357_tx_12 2 + 437794 438601 . 1 808 0 -chrXI 437937 438601 HC_gene_5357_tx_13 23 + 437937 438601 . 1 665 0 -chrXI 437937 438776 HC_gene_5357_tx_16 5 + 437937 438776 . 1 840 0 -chrXI 438038 438601 HC_gene_5357_tx_14 1 + 438038 438601 . 2 185,327 0,237 -chrXI 438038 438601 HC_gene_5357_tx_15 9 + 438038 438601 . 1 564 0 -chrXI 438038 438776 HC_gene_5357_tx_17 5 + 438038 438776 . 1 739 0 -chrXI 438170 438601 HC_gene_5357_tx_19 21 + 438170 438601 . 1 432 0 -chrXI 438170 438776 HC_gene_5357_tx_18 6 + 438170 438776 . 1 607 0 -chrXI 438541 439429 HC_gene_5616_tx_1 2 - 438541 439429 . 1 889 0 -chrXI 438703 439279 HC_gene_5616_tx_4 8 - 438703 439279 . 1 577 0 -chrXI 438703 439429 HC_gene_5616_tx_2 87 - 438703 439429 . 1 727 0 -chrXI 438703 439429 HC_gene_5616_tx_3 1 - 438703 439429 . 2 41,594 0,133 -chrXI 439782 440209 MC_gene_5358_tx_1 1 + 439782 440209 . 1 428 0 -chrXI 440376 440884 HC_gene_5617_tx_1 8 - 440376 440884 . 1 509 0 -chrXI 440376 441046 HC_gene_5617_tx_3 5 - 440376 441046 . 1 671 0 -chrXI 440376 441488 HC_gene_5617_tx_5 3 - 440376 441488 . 1 1113 0 -chrXI 440376 441564 HC_gene_5617_tx_6 1 - 440376 441564 . 1 1189 0 -chrXI 440376 441929 HC_gene_5617_tx_9 1 - 440376 441929 . 1 1554 0 -chrXI 440376 442008 HC_gene_5617_tx_10 1 - 440376 442008 . 1 1633 0 -chrXI 440376 442179 HC_gene_5617_tx_11 3 - 440376 442179 . 1 1804 0 -chrXI 440376 442566 HC_gene_5617_tx_12 2 - 440376 442566 . 1 2191 0 -chrXI 440376 442790 HC_gene_5617_tx_13 8 - 440376 442790 . 1 2415 0 -chrXI 440376 442790 HC_gene_5617_tx_14 1 - 440376 442790 . 2 948,1398 0,1017 -chrXI 440465 440884 HC_gene_5617_tx_2 34 - 440465 440884 . 1 420 0 -chrXI 440465 441046 HC_gene_5617_tx_4 25 - 440465 441046 . 1 582 0 -chrXI 440465 441488 HC_gene_5617_tx_7 10 - 440465 441488 . 1 1024 0 -chrXI 440465 441564 HC_gene_5617_tx_8 10 - 440465 441564 . 1 1100 0 -chrXI 440465 441929 HC_gene_5617_tx_15 13 - 440465 441929 . 1 1465 0 -chrXI 440465 442008 HC_gene_5617_tx_16 8 - 440465 442008 . 1 1544 0 -chrXI 440465 442179 HC_gene_5617_tx_17 8 - 440465 442179 . 1 1715 0 -chrXI 440465 442179 HC_gene_5617_tx_18 1 - 440465 442179 . 2 749,864 0,851 -chrXI 440465 442355 HC_gene_5617_tx_19 8 - 440465 442355 . 1 1891 0 -chrXI 440465 442566 HC_gene_5617_tx_20 10 - 440465 442566 . 1 2102 0 -chrXI 440465 442790 HC_gene_5617_tx_21 1 - 440465 442790 . 2 1059,1221 0,1105 -chrXI 440465 442790 HC_gene_5617_tx_22 1 - 440465 442790 . 2 1049,1213 0,1113 -chrXI 440465 442790 HC_gene_5617_tx_23 56 - 440465 442790 . 1 2326 0 -chrXI 440465 442790 HC_gene_5617_tx_24 1 - 440465 442790 . 2 898,1341 0,985 -chrXI 440465 442790 HC_gene_5617_tx_25 1 - 440465 442790 . 2 1199,411 0,1915 -chrXI 440465 442790 HC_gene_5617_tx_26 1 - 440465 442790 . 2 1400,855 0,1471 -chrXI 440465 442790 HC_gene_5617_tx_27 1 - 440465 442790 . 2 975,1290 0,1036 -chrXI 440465 442790 HC_gene_5617_tx_28 1 - 440465 442790 . 2 1059,1169 0,1157 -chrXI 443042 444996 HC_gene_5359_tx_1 18 + 443042 444996 . 1 1955 0 -chrXI 443042 444996 HC_gene_5359_tx_2 1 + 443042 444996 . 2 1101,761 0,1194 -chrXI 443042 444996 HC_gene_5359_tx_3 1 + 443042 444996 . 2 135,1236 0,719 -chrXI 443042 444996 HC_gene_5359_tx_4 1 + 443042 444996 . 2 1537,210 0,1745 -chrXI 443042 444996 HC_gene_5359_tx_5 1 + 443042 444996 . 2 1119,698 0,1257 -chrXI 443183 444996 HC_gene_5359_tx_6 2 + 443183 444996 . 1 1814 0 -chrXI 443248 444996 HC_gene_5359_tx_7 5 + 443248 444996 . 1 1749 0 -chrXI 444414 444996 HC_gene_5359_tx_8 8 + 444414 444996 . 1 583 0 -chrXI 445327 446823 HC_gene_5360_tx_1 33 + 445327 446823 . 1 1497 0 -chrXI 445327 446920 HC_gene_5360_tx_2 2 + 445327 446920 . 1 1594 0 -chrXI 445816 446823 HC_gene_5360_tx_3 10 + 445816 446823 . 1 1008 0 -chrXI 446196 446488 HC_gene_5618_tx_1 2 - 446196 446488 . 1 293 0 -chrXI 446392 446823 HC_gene_5360_tx_4 18 + 446392 446823 . 1 432 0 -chrXI 446690 446920 HC_gene_5360_tx_5 1 + 446690 446920 . 1 231 0 -chrXI 446693 447090 HC_gene_5619_tx_1 3 - 446693 447090 . 1 398 0 -chrXI 446693 448045 HC_gene_5619_tx_2 9 - 446693 448045 . 2 1014,235 0,1118 -chrXI 446693 448045 HC_gene_5619_tx_3 4 - 446693 448045 . 1 1353 0 -chrXI 446693 448045 HC_gene_5619_tx_4 1 - 446693 448045 . 2 1020,226 0,1127 -chrXI 446693 448045 HC_gene_5619_tx_5 1 - 446693 448045 . 3 459,464,235 0,550,1118 -chrXI 447347 447700 HC_gene_5361_tx_1 1 + 447347 447700 . 1 354 0 -chrXI 448217 448428 MC_gene_5362_tx_1 1 + 448217 448428 . 1 212 0 -chrXI 448291 451229 HC_gene_5620_tx_1 1 - 448291 451229 . 3 1661,41,1108 0,1730,1831 -chrXI 450338 450933 HC_gene_5620_tx_2 10 - 450338 450933 . 1 596 0 -chrXI 450338 451229 HC_gene_5620_tx_3 95 - 450338 451229 . 1 892 0 -chrXI 450338 451229 HC_gene_5620_tx_4 1 - 450338 451229 . 2 532,283 0,609 -chrXI 450338 451973 HC_gene_5620_tx_5 1 - 450338 451973 . 1 1636 0 -chrXI 451416 452081 HC_gene_5363_tx_1 84 + 451416 452081 . 1 666 0 -chrXI 451691 452081 HC_gene_5363_tx_2 8 + 451691 452081 . 1 391 0 -chrXI 452173 454171 HC_gene_5364_tx_1 29 + 452173 454171 . 1 1999 0 -chrXI 452173 454171 HC_gene_5364_tx_2 1 + 452173 454171 . 2 1061,864 0,1135 -chrXI 452189 454171 HC_gene_5364_tx_3 1 + 452189 454171 . 2 1021,908 0,1075 -chrXI 453191 454171 HC_gene_5364_tx_4 12 + 453191 454171 . 1 981 0 -chrXI 454200 454582 HC_gene_5621_tx_1 23 - 454200 454582 . 1 383 0 -chrXI 454200 455171 HC_gene_5621_tx_2 6 - 454200 455171 . 1 972 0 -chrXI 454200 455547 HC_gene_5621_tx_4 6 - 454200 455547 . 1 1348 0 -chrXI 454302 454582 HC_gene_5621_tx_6 5 - 454302 454582 . 1 281 0 -chrXI 454302 455171 HC_gene_5621_tx_3 1 - 454302 455171 . 1 870 0 -chrXI 454302 455547 HC_gene_5621_tx_5 1 - 454302 455547 . 1 1246 0 -chrXI 455710 457189 HC_gene_5365_tx_1 1 + 455710 457189 . 1 1480 0 -chrXI 458007 458306 LC_gene_5366_tx_1 1 + 458007 458306 . 1 300 0 -chrXI 458583 458806 MC_gene_5367_tx_1 1 + 458583 458806 . 1 224 0 -chrXI 458741 461354 HC_gene_5622_tx_1 4 - 458741 461354 . 1 2614 0 -chrXI 458924 461354 HC_gene_5622_tx_2 1 - 458924 461354 . 1 2431 0 -chrXI 461398 461774 HC_gene_5623_tx_1 2 - 461398 461774 . 1 377 0 -chrXI 461398 461894 HC_gene_5623_tx_2 2 - 461398 461894 . 1 497 0 -chrXI 461398 462805 HC_gene_5623_tx_4 6 - 461398 462805 . 1 1408 0 -chrXI 461497 461774 HC_gene_5623_tx_7 2 - 461497 461774 . 1 278 0 -chrXI 461497 461894 HC_gene_5623_tx_3 6 - 461497 461894 . 1 398 0 -chrXI 461497 462294 HC_gene_5623_tx_8 5 - 461497 462294 . 1 798 0 -chrXI 461497 462805 HC_gene_5623_tx_5 28 - 461497 462805 . 1 1309 0 -chrXI 461497 462805 HC_gene_5623_tx_6 1 - 461497 462805 . 2 640,616 0,693 -chrXI 461599 462307 HC_gene_5368_tx_1 1 + 461599 462307 . 1 709 0 -chrXI 461599 462791 HC_gene_5368_tx_2 6 + 461599 462791 . 1 1193 0 -chrXI 462987 463503 HC_gene_5624_tx_1 7 - 462987 463503 . 1 517 0 -chrXI 463661 464681 MC_gene_5625_tx_1 1 - 463661 464681 . 1 1021 0 -chrXI 463733 463995 HC_gene_5369_tx_1 2 + 463733 463995 . 1 263 0 -chrXI 463733 465260 HC_gene_5369_tx_2 1 + 463733 465260 . 1 1528 0 -chrXI 463812 464802 MC_gene_5626_tx_1 1 - 463812 464802 . 1 991 0 -chrXI 463918 465051 HC_gene_5369_tx_3 8 + 463918 465051 . 1 1134 0 -chrXI 463918 465054 HC_gene_5369_tx_4 1 + 463918 465054 . 1 1137 0 -chrXI 463918 465056 HC_gene_5369_tx_5 7 + 463918 465056 . 1 1139 0 -chrXI 463918 465057 HC_gene_5369_tx_6 1 + 463918 465057 . 1 1140 0 -chrXI 463918 465058 HC_gene_5369_tx_7 2 + 463918 465058 . 1 1141 0 -chrXI 463918 465069 HC_gene_5369_tx_8 1 + 463918 465069 . 1 1152 0 -chrXI 463918 465076 HC_gene_5369_tx_9 1 + 463918 465076 . 1 1159 0 -chrXI 463918 465078 HC_gene_5369_tx_10 1 + 463918 465078 . 1 1161 0 -chrXI 463918 465079 HC_gene_5369_tx_11 1 + 463918 465079 . 1 1162 0 -chrXI 463918 465082 HC_gene_5369_tx_12 1 + 463918 465082 . 1 1165 0 -chrXI 463918 465090 HC_gene_5369_tx_13 1 + 463918 465090 . 1 1173 0 -chrXI 463918 465094 HC_gene_5369_tx_14 1 + 463918 465094 . 1 1177 0 -chrXI 463918 465095 HC_gene_5369_tx_15 1 + 463918 465095 . 1 1178 0 -chrXI 463918 465096 HC_gene_5369_tx_16 2 + 463918 465096 . 1 1179 0 -chrXI 463918 465097 HC_gene_5369_tx_17 1 + 463918 465097 . 1 1180 0 -chrXI 463918 465099 HC_gene_5369_tx_18 2 + 463918 465099 . 1 1182 0 -chrXI 463918 465110 HC_gene_5369_tx_19 2 + 463918 465110 . 1 1193 0 -chrXI 463918 465142 HC_gene_5369_tx_20 1 + 463918 465142 . 1 1225 0 -chrXI 463918 465145 HC_gene_5369_tx_21 1 + 463918 465145 . 1 1228 0 -chrXI 463918 465147 HC_gene_5369_tx_22 1 + 463918 465147 . 2 146,1001 0,229 -chrXI 463918 465151 HC_gene_5369_tx_23 1 + 463918 465151 . 1 1234 0 -chrXI 463918 465164 HC_gene_5369_tx_24 1 + 463918 465164 . 1 1247 0 -chrXI 463918 465165 HC_gene_5369_tx_25 1 + 463918 465165 . 1 1248 0 -chrXI 463918 465167 HC_gene_5369_tx_26 1 + 463918 465167 . 1 1250 0 -chrXI 463918 465168 HC_gene_5369_tx_27 1 + 463918 465168 . 1 1251 0 -chrXI 463918 465260 HC_gene_5369_tx_28 97 + 463918 465260 . 1 1343 0 -chrXI 463918 465260 HC_gene_5369_tx_29 1 + 463918 465260 . 2 37,1055 0,288 -chrXI 463918 465260 HC_gene_5369_tx_30 1 + 463918 465260 . 2 1055,232 0,1111 -chrXI 463918 465260 HC_gene_5369_tx_31 1 + 463918 465260 . 2 257,965 0,378 -chrXI 463918 465260 HC_gene_5369_tx_32 1 + 463918 465260 . 2 1197,30 0,1313 -chrXI 463918 465260 HC_gene_5369_tx_33 1 + 463918 465260 . 2 1152,69 0,1274 -chrXI 463918 465260 HC_gene_5369_tx_34 1 + 463918 465260 . 2 462,775 0,568 -chrXI 463918 465260 HC_gene_5369_tx_35 1 + 463918 465260 . 2 167,918 0,425 -chrXI 463918 465260 HC_gene_5369_tx_36 1 + 463918 465260 . 2 474,796 0,547 -chrXI 463918 465260 HC_gene_5369_tx_37 1 + 463918 465260 . 2 292,501 0,842 -chrXI 464026 465056 HC_gene_5369_tx_38 2 + 464026 465056 . 1 1031 0 -chrXI 464026 465059 HC_gene_5369_tx_39 1 + 464026 465059 . 1 1034 0 -chrXI 464026 465098 HC_gene_5369_tx_40 1 + 464026 465098 . 1 1073 0 -chrXI 464026 465166 HC_gene_5369_tx_41 2 + 464026 465166 . 1 1141 0 -chrXI 464026 465260 HC_gene_5369_tx_42 18 + 464026 465260 . 1 1235 0 -chrXI 464135 465051 HC_gene_5369_tx_43 1 + 464135 465051 . 1 917 0 -chrXI 464135 465060 HC_gene_5369_tx_44 1 + 464135 465060 . 1 926 0 -chrXI 464135 465069 HC_gene_5369_tx_45 1 + 464135 465069 . 1 935 0 -chrXI 464135 465080 HC_gene_5369_tx_46 1 + 464135 465080 . 1 946 0 -chrXI 464135 465090 HC_gene_5369_tx_47 1 + 464135 465090 . 1 956 0 -chrXI 464135 465095 HC_gene_5369_tx_48 1 + 464135 465095 . 2 296,583 0,378 -chrXI 464135 465148 HC_gene_5369_tx_49 1 + 464135 465148 . 1 1014 0 -chrXI 464135 465161 HC_gene_5369_tx_50 1 + 464135 465161 . 1 1027 0 -chrXI 464135 465260 HC_gene_5369_tx_51 13 + 464135 465260 . 1 1126 0 -chrXI 464241 465051 HC_gene_5369_tx_52 2 + 464241 465051 . 1 811 0 -chrXI 464241 465056 HC_gene_5369_tx_53 2 + 464241 465056 . 1 816 0 -chrXI 464241 465095 HC_gene_5369_tx_54 3 + 464241 465095 . 1 855 0 -chrXI 464241 465099 HC_gene_5369_tx_55 1 + 464241 465099 . 1 859 0 -chrXI 464241 465260 HC_gene_5369_tx_56 9 + 464241 465260 . 1 1020 0 -chrXI 464318 465051 HC_gene_5369_tx_57 1 + 464318 465051 . 1 734 0 -chrXI 464318 465090 HC_gene_5369_tx_58 1 + 464318 465090 . 1 773 0 -chrXI 464318 465094 HC_gene_5369_tx_59 1 + 464318 465094 . 1 777 0 -chrXI 464318 465147 HC_gene_5369_tx_60 2 + 464318 465147 . 1 830 0 -chrXI 464318 465149 HC_gene_5369_tx_61 1 + 464318 465149 . 1 832 0 -chrXI 464318 465170 HC_gene_5369_tx_62 2 + 464318 465170 . 1 853 0 -chrXI 464318 465260 HC_gene_5369_tx_63 24 + 464318 465260 . 1 943 0 -chrXI 464318 465260 HC_gene_5369_tx_64 1 + 464318 465260 . 2 420,467 0,476 -chrXI 464318 465260 HC_gene_5369_tx_65 1 + 464318 465260 . 2 62,817 0,126 -chrXI 464318 465260 HC_gene_5369_tx_66 1 + 464318 465260 . 2 62,829 0,114 -chrXI 465135 465442 HC_gene_5627_tx_1 7 - 465135 465442 . 1 308 0 -chrXI 465135 465528 HC_gene_5627_tx_2 29 - 465135 465528 . 1 394 0 -chrXI 465135 465592 HC_gene_5627_tx_3 17 - 465135 465592 . 1 458 0 -chrXI 465135 465723 HC_gene_5627_tx_4 42 - 465135 465723 . 1 589 0 -chrXI 465135 465723 HC_gene_5627_tx_5 1 - 465135 465723 . 2 61,361 0,228 -chrXI 465135 465866 HC_gene_5627_tx_6 23 - 465135 465866 . 1 732 0 -chrXI 465135 466033 HC_gene_5627_tx_7 8 - 465135 466033 . 1 899 0 -chrXI 465135 466171 HC_gene_5627_tx_8 1 - 465135 466171 . 2 84,748 0,289 -chrXI 465135 466215 HC_gene_5627_tx_9 147 - 465135 466215 . 1 1081 0 -chrXI 465135 466215 HC_gene_5627_tx_10 1 - 465135 466215 . 2 58,956 0,125 -chrXI 465135 466215 HC_gene_5627_tx_11 1 - 465135 466215 . 2 84,887 0,194 -chrXI 465135 466215 HC_gene_5627_tx_12 1 - 465135 466215 . 2 67,967 0,114 -chrXI 465135 466215 HC_gene_5627_tx_13 1 - 465135 466215 . 2 793,159 0,922 -chrXI 465135 466215 HC_gene_5627_tx_14 1 - 465135 466215 . 2 759,146 0,935 -chrXI 465238 465723 HC_gene_5627_tx_15 1 - 465238 465723 . 1 486 0 -chrXI 465239 466215 HC_gene_5627_tx_16 1 - 465239 466215 . 1 977 0 -chrXI 465240 465592 HC_gene_5627_tx_17 1 - 465240 465592 . 1 353 0 -chrXI 465823 466179 LC_gene_5370_tx_1 1 + 465823 466179 . 1 357 0 -chrXI 466420 467848 HC_gene_5371_tx_1 1 + 466420 467848 . 1 1429 0 -chrXI 466420 468302 HC_gene_5371_tx_2 4 + 466420 468302 . 1 1883 0 -chrXI 466420 468463 HC_gene_5371_tx_3 1 + 466420 468463 . 1 2044 0 -chrXI 466420 468761 HC_gene_5371_tx_4 1 + 466420 468761 . 1 2342 0 -chrXI 466781 468199 LC_gene_5628_tx_1 1 - 466781 468199 . 1 1419 0 -chrXI 468362 469326 LC_gene_5629_tx_1 1 - 468362 469326 . 1 965 0 -chrXI 469685 471457 HC_gene_5372_tx_1 3 + 469685 471457 . 1 1773 0 -chrXI 469685 471569 HC_gene_5372_tx_2 20 + 469685 471569 . 1 1885 0 -chrXI 469763 471569 HC_gene_5372_tx_3 3 + 469763 471569 . 1 1807 0 -chrXI 469942 471457 HC_gene_5372_tx_4 1 + 469942 471457 . 1 1516 0 -chrXI 469942 471569 HC_gene_5372_tx_5 1 + 469942 471569 . 1 1628 0 -chrXI 470008 471457 HC_gene_5372_tx_6 1 + 470008 471457 . 1 1450 0 -chrXI 470008 471569 HC_gene_5372_tx_7 8 + 470008 471569 . 1 1562 0 -chrXI 470380 471457 HC_gene_5372_tx_8 2 + 470380 471457 . 1 1078 0 -chrXI 470380 471569 HC_gene_5372_tx_9 9 + 470380 471569 . 1 1190 0 -chrXI 470525 471457 HC_gene_5372_tx_10 1 + 470525 471457 . 1 933 0 -chrXI 470525 471569 HC_gene_5372_tx_11 9 + 470525 471569 . 1 1045 0 -chrXI 471541 473429 HC_gene_5630_tx_1 12 - 471541 473429 . 1 1889 0 -chrXI 471541 473429 HC_gene_5630_tx_2 1 - 471541 473429 . 2 1117,432 0,1457 -chrXI 471541 473429 HC_gene_5630_tx_3 1 - 471541 473429 . 2 1222,414 0,1475 -chrXI 472402 474146 LC_gene_5373_tx_1 1 + 472402 474146 . 1 1745 0 -chrXI 473452 474215 HC_gene_5631_tx_1 2 - 473452 474215 . 1 764 0 -chrXI 473452 474623 HC_gene_5631_tx_3 1 - 473452 474623 . 1 1172 0 -chrXI 473452 475039 HC_gene_5631_tx_6 1 - 473452 475039 . 1 1588 0 -chrXI 473452 475763 HC_gene_5631_tx_8 1 - 473452 475763 . 1 2312 0 -chrXI 473452 475787 HC_gene_5631_tx_9 1 - 473452 475787 . 1 2336 0 -chrXI 473452 475908 HC_gene_5631_tx_10 1 - 473452 475908 . 1 2457 0 -chrXI 473569 474215 HC_gene_5631_tx_2 12 - 473569 474215 . 1 647 0 -chrXI 473569 474623 HC_gene_5631_tx_4 7 - 473569 474623 . 1 1055 0 -chrXI 473569 474720 HC_gene_5631_tx_5 5 - 473569 474720 . 1 1152 0 -chrXI 473569 475039 HC_gene_5631_tx_7 3 - 473569 475039 . 1 1471 0 -chrXI 473569 475447 HC_gene_5631_tx_11 5 - 473569 475447 . 1 1879 0 -chrXI 473569 475753 HC_gene_5631_tx_12 2 - 473569 475753 . 1 2185 0 -chrXI 473569 475929 HC_gene_5631_tx_13 31 - 473569 475929 . 1 2361 0 -chrXI 475670 476241 MC_gene_5374_tx_1 1 + 475670 476241 . 1 572 0 -chrXI 476049 478146 HC_gene_5632_tx_1 2 - 476049 478146 . 1 2098 0 -chrXI 476145 478146 HC_gene_5632_tx_2 4 - 476145 478146 . 1 2002 0 -chrXI 478320 479054 HC_gene_5375_tx_1 32 + 478320 479054 . 1 735 0 -chrXI 478320 479189 HC_gene_5375_tx_2 7 + 478320 479189 . 1 870 0 -chrXI 478320 482109 HC_gene_5375_tx_6 1 + 478320 482109 . 1 3790 0 -chrXI 478375 479189 HC_gene_5375_tx_3 1 + 478375 479189 . 1 815 0 -chrXI 478377 479189 HC_gene_5375_tx_4 1 + 478377 479189 . 1 813 0 -chrXI 478497 479054 HC_gene_5375_tx_7 6 + 478497 479054 . 1 558 0 -chrXI 478502 479189 HC_gene_5375_tx_5 1 + 478502 479189 . 1 688 0 -chrXI 478598 479054 HC_gene_5375_tx_8 5 + 478598 479054 . 1 457 0 -chrXI 478682 479054 HC_gene_5375_tx_9 8 + 478682 479054 . 1 373 0 -chrXI 478682 479189 HC_gene_5375_tx_10 3 + 478682 479189 . 1 508 0 -chrXI 479160 482109 HC_gene_5375_tx_11 1 + 479160 482109 . 1 2950 0 -chrXI 479160 482109 HC_gene_5375_tx_12 1 + 479160 482109 . 2 1054,1353 0,1597 -chrXI 482048 482815 HC_gene_5633_tx_1 12 - 482048 482815 . 1 768 0 -chrXI 482048 482876 HC_gene_5633_tx_2 8 - 482048 482876 . 1 829 0 -chrXI 482048 483188 HC_gene_5633_tx_3 33 - 482048 483188 . 1 1141 0 -chrXI 482048 483188 HC_gene_5633_tx_4 1 - 482048 483188 . 2 685,119 0,1022 -chrXI 482048 483188 HC_gene_5633_tx_5 1 - 482048 483188 . 2 731,86 0,1055 -chrXI 482113 483188 HC_gene_5633_tx_6 1 - 482113 483188 . 1 1076 0 -chrXI 483370 485142 HC_gene_5376_tx_1 15 + 483370 485142 . 1 1773 0 -chrXI 483370 485142 HC_gene_5376_tx_2 1 + 483370 485142 . 2 1039,647 0,1126 -chrXI 484169 485142 HC_gene_5376_tx_3 4 + 484169 485142 . 1 974 0 -chrXI 484220 485142 HC_gene_5376_tx_4 2 + 484220 485142 . 1 923 0 -chrXI 485050 487197 HC_gene_5634_tx_1 2 - 485050 487197 . 1 2148 0 -chrXI 485050 487400 HC_gene_5634_tx_2 23 - 485050 487400 . 1 2351 0 -chrXI 485050 487400 HC_gene_5634_tx_3 1 - 485050 487400 . 2 1037,1211 0,1140 -chrXI 485050 487400 HC_gene_5634_tx_4 1 - 485050 487400 . 2 859,1433 0,918 -chrXI 485050 487400 HC_gene_5634_tx_5 1 - 485050 487400 . 2 1014,1289 0,1062 -chrXI 485050 487400 HC_gene_5634_tx_6 1 - 485050 487400 . 2 1054,1237 0,1114 -chrXI 485050 487400 HC_gene_5634_tx_7 1 - 485050 487400 . 2 1010,1289 0,1062 -chrXI 485050 487400 HC_gene_5634_tx_8 1 - 485050 487400 . 2 2068,135 0,2216 -chrXI 485050 487400 HC_gene_5634_tx_9 1 - 485050 487400 . 2 2068,151 0,2200 -chrXI 485050 487400 HC_gene_5634_tx_10 1 - 485050 487400 . 2 1012,1211 0,1140 -chrXI 487738 488721 HC_gene_5377_tx_1 142 + 487738 488721 . 1 984 0 -chrXI 487738 488721 HC_gene_5377_tx_2 1 + 487738 488721 . 2 636,200 0,784 -chrXI 487738 488721 HC_gene_5377_tx_3 1 + 487738 488721 . 2 114,438 0,546 -chrXI 488564 488848 HC_gene_5635_tx_1 12 - 488564 488848 . 1 285 0 -chrXI 488564 489308 HC_gene_5635_tx_2 14 - 488564 489308 . 1 745 0 -chrXI 488564 489762 HC_gene_5635_tx_3 106 - 488564 489762 . 1 1199 0 -chrXI 488564 489762 HC_gene_5635_tx_4 1 - 488564 489762 . 2 486,484 0,715 -chrXI 488564 489762 HC_gene_5635_tx_5 1 - 488564 489762 . 4 200,167,184,197 0,380,690,1002 -chrXI 488564 489762 HC_gene_5635_tx_6 1 - 488564 489762 . 2 562,488 0,711 -chrXI 488564 489762 HC_gene_5635_tx_7 1 - 488564 489762 . 2 298,302 0,897 -chrXI 489885 490388 MC_gene_5378_tx_1 1 + 489885 490388 . 1 504 0 -chrXI 489943 490125 MC_gene_5378_tx_2 1 + 489943 490125 . 1 183 0 -chrXI 490547 490965 MC_gene_5636_tx_1 1 - 490547 490965 . 1 419 0 -chrXI 490991 491127 MC_gene_5379_tx_1 1 + 490991 491127 . 1 137 0 -chrXI 491285 493744 HC_gene_5380_tx_1 3 + 491285 493744 . 1 2460 0 -chrXI 491285 494213 HC_gene_5380_tx_2 1 + 491285 494213 . 1 2929 0 -chrXI 493088 493652 MC_gene_5637_tx_1 1 - 493088 493652 . 1 565 0 -chrXI 493881 497486 HC_gene_5381_tx_1 18 + 493881 497486 . 1 3606 0 -chrXI 493881 497486 HC_gene_5381_tx_2 1 + 493881 497486 . 2 2242,1184 0,2422 -chrXI 493881 497486 HC_gene_5381_tx_3 1 + 493881 497486 . 2 2279,1165 0,2441 -chrXI 493881 497486 HC_gene_5381_tx_4 1 + 493881 497486 . 2 1599,1948 0,1658 -chrXI 493881 497486 HC_gene_5381_tx_5 1 + 493881 497486 . 2 2820,560 0,3046 -chrXI 494028 497486 HC_gene_5381_tx_6 1 + 494028 497486 . 2 2616,779 0,2680 -chrXI 494240 497486 HC_gene_5381_tx_7 2 + 494240 497486 . 1 3247 0 -chrXI 494533 497486 HC_gene_5381_tx_8 2 + 494533 497486 . 1 2954 0 -chrXI 495696 497486 HC_gene_5381_tx_9 5 + 495696 497486 . 1 1791 0 -chrXI 495802 497486 HC_gene_5381_tx_10 4 + 495802 497486 . 1 1685 0 -chrXI 496019 497486 HC_gene_5381_tx_11 3 + 496019 497486 . 1 1468 0 -chrXI 496200 497506 LC_gene_5638_tx_1 1 - 496200 497506 . 1 1307 0 -chrXI 496326 497486 HC_gene_5381_tx_12 9 + 496326 497486 . 1 1161 0 -chrXI 496634 497486 HC_gene_5381_tx_13 10 + 496634 497486 . 1 853 0 -chrXI 497482 499334 HC_gene_5639_tx_1 1 - 497482 499334 . 1 1853 0 -chrXI 497482 499846 HC_gene_5639_tx_2 14 - 497482 499846 . 1 2365 0 -chrXI 500059 501142 HC_gene_5382_tx_1 1 + 500059 501142 . 1 1084 0 -chrXI 500059 501215 HC_gene_5382_tx_2 9 + 500059 501215 . 1 1157 0 -chrXI 500235 501142 HC_gene_5382_tx_3 5 + 500235 501142 . 1 908 0 -chrXI 500235 501215 HC_gene_5382_tx_4 53 + 500235 501215 . 1 981 0 -chrXI 500235 501215 HC_gene_5382_tx_5 1 + 500235 501215 . 3 241,249,308 0,339,673 -chrXI 500235 501215 HC_gene_5382_tx_6 1 + 500235 501215 . 2 393,161 0,820 -chrXI 500537 501142 HC_gene_5382_tx_7 1 + 500537 501142 . 1 606 0 -chrXI 500537 501215 HC_gene_5382_tx_8 8 + 500537 501215 . 1 679 0 -chrXI 500645 501142 HC_gene_5382_tx_9 2 + 500645 501142 . 1 498 0 -chrXI 500645 501215 HC_gene_5382_tx_10 18 + 500645 501215 . 1 571 0 -chrXI 501108 501776 HC_gene_5640_tx_1 10 - 501108 501776 . 1 669 0 -chrXI 501108 502336 HC_gene_5640_tx_2 5 - 501108 502336 . 1 1229 0 -chrXI 501108 502800 HC_gene_5640_tx_4 1 - 501108 502800 . 1 1693 0 -chrXI 501108 502913 HC_gene_5640_tx_5 3 - 501108 502913 . 1 1806 0 -chrXI 501210 502336 HC_gene_5640_tx_3 1 - 501210 502336 . 1 1127 0 -chrXI 504152 506490 MC_gene_5641_tx_1 1 - 504152 506490 . 1 2339 0 -chrXI 507167 507757 LC_gene_5383_tx_1 1 + 507167 507757 . 1 591 0 -chrXI 507921 508727 HC_gene_5384_tx_1 114 + 507921 508727 . 1 807 0 -chrXI 508228 508727 HC_gene_5384_tx_2 29 + 508228 508727 . 1 500 0 -chrXI 508357 508727 HC_gene_5384_tx_3 12 + 508357 508727 . 1 371 0 -chrXI 508477 510658 HC_gene_5642_tx_1 1 - 508477 510658 . 1 2182 0 -chrXI 508592 510658 HC_gene_5642_tx_2 1 - 508592 510658 . 2 801,1204 0,863 -chrXI 508592 510658 HC_gene_5642_tx_3 17 - 508592 510658 . 1 2067 0 -chrXI 508592 510658 HC_gene_5642_tx_4 1 - 508592 510658 . 2 53,1909 0,158 -chrXI 508660 510658 HC_gene_5642_tx_5 2 - 508660 510658 . 1 1999 0 -chrXI 510788 511807 HC_gene_5643_tx_1 22 - 510788 511807 . 1 1020 0 -chrXI 510965 512026 MC_gene_5385_tx_1 1 + 510965 512026 . 1 1062 0 -chrXI 511918 512747 HC_gene_5644_tx_1 6 - 511918 512747 . 1 830 0 -chrXI 511918 512954 HC_gene_5644_tx_2 11 - 511918 512954 . 1 1037 0 -chrXI 511918 513169 HC_gene_5644_tx_3 63 - 511918 513169 . 1 1252 0 -chrXI 513555 513947 HC_gene_5645_tx_1 40 - 513555 513947 . 1 393 0 -chrXI 513555 514428 HC_gene_5645_tx_3 4 - 513555 514428 . 1 874 0 -chrXI 513625 513947 HC_gene_5645_tx_2 5 - 513625 513947 . 1 323 0 -chrXI 513625 514428 HC_gene_5645_tx_4 5 - 513625 514428 . 1 804 0 -chrXI 514535 516013 LC_gene_5646_tx_1 1 - 514535 516013 . 1 1479 0 -chrXI 514784 516942 HC_gene_5386_tx_1 4 + 514784 516942 . 1 2159 0 -chrXI 514784 516942 HC_gene_5386_tx_2 1 + 514784 516942 . 3 606,578,335 0,1062,1824 -chrXI 514990 516942 HC_gene_5386_tx_3 7 + 514990 516942 . 1 1953 0 -chrXI 516406 517001 MC_gene_5647_tx_1 1 - 516406 517001 . 1 596 0 -chrXI 516878 517296 MC_gene_5648_tx_1 1 - 516878 517296 . 1 419 0 -chrXI 517253 517751 LC_gene_5387_tx_1 1 + 517253 517751 . 1 499 0 -chrXI 517493 518413 MC_gene_5649_tx_1 1 - 517493 518413 . 1 921 0 -chrXI 518178 520758 HC_gene_5388_tx_1 1 + 518178 520758 . 1 2581 0 -chrXI 518178 520858 HC_gene_5388_tx_2 1 + 518178 520858 . 1 2681 0 -chrXI 519319 520758 HC_gene_5388_tx_3 629 + 519319 520758 . 1 1440 0 -chrXI 519319 520758 HC_gene_5388_tx_4 1 + 519319 520758 . 2 64,1071 0,369 -chrXI 519319 520758 HC_gene_5388_tx_5 1 + 519319 520758 . 2 542,745 0,695 -chrXI 519319 520758 HC_gene_5388_tx_6 1 + 519319 520758 . 2 74,832 0,608 -chrXI 519319 520758 HC_gene_5388_tx_7 1 + 519319 520758 . 2 836,365 0,1075 -chrXI 519319 520758 HC_gene_5388_tx_8 1 + 519319 520758 . 2 223,1068 0,372 -chrXI 519319 520758 HC_gene_5388_tx_9 1 + 519319 520758 . 2 184,1122 0,318 -chrXI 519319 520758 HC_gene_5388_tx_10 1 + 519319 520758 . 2 223,1097 0,343 -chrXI 519319 520758 HC_gene_5388_tx_11 1 + 519319 520758 . 2 323,984 0,456 -chrXI 519319 520758 HC_gene_5388_tx_12 1 + 519319 520758 . 2 581,809 0,631 -chrXI 519319 520758 HC_gene_5388_tx_13 1 + 519319 520758 . 2 890,494 0,946 -chrXI 519319 520758 HC_gene_5388_tx_14 1 + 519319 520758 . 2 638,625 0,815 -chrXI 519319 520758 HC_gene_5388_tx_15 1 + 519319 520758 . 2 948,437 0,1003 -chrXI 519319 520758 HC_gene_5388_tx_16 1 + 519319 520758 . 2 240,1068 0,372 -chrXI 519319 520758 HC_gene_5388_tx_17 1 + 519319 520758 . 3 83,198,165 0,876,1275 -chrXI 519319 520758 HC_gene_5388_tx_18 1 + 519319 520758 . 2 64,981 0,459 -chrXI 519319 520758 HC_gene_5388_tx_19 1 + 519319 520758 . 2 283,963 0,477 -chrXI 519319 520758 HC_gene_5388_tx_20 1 + 519319 520758 . 2 321,699 0,741 -chrXI 519319 520758 HC_gene_5388_tx_21 1 + 519319 520758 . 2 374,963 0,477 -chrXI 519319 520758 HC_gene_5388_tx_22 1 + 519319 520758 . 2 1002,317 0,1123 -chrXI 519319 520758 HC_gene_5388_tx_23 1 + 519319 520758 . 2 461,875 0,565 -chrXI 519319 520758 HC_gene_5388_tx_24 1 + 519319 520758 . 2 186,434 0,1006 -chrXI 519319 520758 HC_gene_5388_tx_25 1 + 519319 520758 . 2 443,528 0,912 -chrXI 519319 520758 HC_gene_5388_tx_26 1 + 519319 520758 . 2 1180,134 0,1306 -chrXI 519319 520758 HC_gene_5388_tx_27 1 + 519319 520758 . 2 223,1017 0,423 -chrXI 519319 520758 HC_gene_5388_tx_28 1 + 519319 520758 . 2 923,473 0,967 -chrXI 519319 520758 HC_gene_5388_tx_29 1 + 519319 520758 . 2 223,1109 0,331 -chrXI 519319 520858 HC_gene_5388_tx_30 923 + 519319 520858 . 1 1540 0 -chrXI 519319 520858 HC_gene_5388_tx_31 1 + 519319 520858 . 2 515,895 0,645 -chrXI 519319 520858 HC_gene_5388_tx_32 1 + 519319 520858 . 2 48,979 0,561 -chrXI 519319 520858 HC_gene_5388_tx_33 1 + 519319 520858 . 2 425,1007 0,533 -chrXI 519319 520858 HC_gene_5388_tx_34 1 + 519319 520858 . 2 323,1114 0,426 -chrXI 519319 520858 HC_gene_5388_tx_35 1 + 519319 520858 . 2 374,1084 0,456 -chrXI 519319 520858 HC_gene_5388_tx_36 3 + 519319 520858 . 2 1425,66 0,1474 -chrXI 519319 520858 HC_gene_5388_tx_37 1 + 519319 520858 . 2 83,1236 0,304 -chrXI 519319 520858 HC_gene_5388_tx_38 1 + 519319 520858 . 2 1428,72 0,1468 -chrXI 519319 520858 HC_gene_5388_tx_39 1 + 519319 520858 . 2 128,1274 0,266 -chrXI 519319 520858 HC_gene_5388_tx_40 1 + 519319 520858 . 2 425,994 0,546 -chrXI 519319 520858 HC_gene_5388_tx_41 1 + 519319 520858 . 2 93,1388 0,152 -chrXI 519319 520858 HC_gene_5388_tx_42 1 + 519319 520858 . 2 992,487 0,1053 -chrXI 519319 520858 HC_gene_5388_tx_43 1 + 519319 520858 . 2 64,932 0,608 -chrXI 519319 520858 HC_gene_5388_tx_44 1 + 519319 520858 . 2 1044,421 0,1119 -chrXI 519319 520858 HC_gene_5388_tx_45 1 + 519319 520858 . 2 719,759 0,781 -chrXI 519319 520858 HC_gene_5388_tx_46 1 + 519319 520858 . 2 130,870 0,670 -chrXI 519319 520858 HC_gene_5388_tx_47 1 + 519319 520858 . 2 1118,265 0,1275 -chrXI 519319 520858 HC_gene_5388_tx_48 1 + 519319 520858 . 2 1002,465 0,1075 -chrXI 519319 520858 HC_gene_5388_tx_49 1 + 519319 520858 . 2 389,1084 0,456 -chrXI 519319 520858 HC_gene_5388_tx_50 1 + 519319 520858 . 2 491,840 0,700 -chrXI 519319 520858 HC_gene_5388_tx_51 1 + 519319 520858 . 2 305,1134 0,406 -chrXI 519319 520858 HC_gene_5388_tx_52 1 + 519319 520858 . 2 374,1081 0,459 -chrXI 519319 520858 HC_gene_5388_tx_53 1 + 519319 520858 . 2 484,870 0,670 -chrXI 519319 520858 HC_gene_5388_tx_54 1 + 519319 520858 . 2 440,1015 0,525 -chrXI 519319 520858 HC_gene_5388_tx_55 1 + 519319 520858 . 2 83,1178 0,362 -chrXI 519319 520858 HC_gene_5388_tx_56 1 + 519319 520858 . 2 93,1371 0,169 -chrXI 519319 520858 HC_gene_5388_tx_57 1 + 519319 520858 . 2 890,602 0,938 -chrXI 519319 520858 HC_gene_5388_tx_58 1 + 519319 520858 . 3 70,126,487 0,876,1053 -chrXI 519319 520858 HC_gene_5388_tx_59 1 + 519319 520858 . 2 81,1301 0,239 -chrXI 519319 520858 HC_gene_5388_tx_60 1 + 519319 520858 . 2 1421,72 0,1468 -chrXI 519319 520858 HC_gene_5388_tx_61 1 + 519319 520858 . 2 223,1222 0,318 -chrXI 519319 520858 HC_gene_5388_tx_62 1 + 519319 520858 . 2 1238,237 0,1303 -chrXI 519319 520858 HC_gene_5388_tx_63 1 + 519319 520858 . 2 581,742 0,798 -chrXI 519319 520858 HC_gene_5388_tx_64 1 + 519319 520858 . 2 223,1171 0,369 -chrXI 519319 520858 HC_gene_5388_tx_65 1 + 519319 520858 . 2 320,889 0,651 -chrXI 519319 520858 HC_gene_5388_tx_66 1 + 519319 520858 . 2 176,1081 0,459 -chrXI 519319 520858 HC_gene_5388_tx_67 1 + 519319 520858 . 2 300,780 0,760 -chrXI 519321 520758 HC_gene_5388_tx_68 1 + 519321 520758 . 2 1257,95 0,1343 -chrXI 519322 520858 HC_gene_5388_tx_69 1 + 519322 520858 . 2 1256,213 0,1324 -chrXI 519569 520758 HC_gene_5388_tx_70 121 + 519569 520758 . 1 1190 0 -chrXI 519569 520758 HC_gene_5388_tx_71 1 + 519569 520758 . 2 673,333 0,857 -chrXI 519569 520758 HC_gene_5388_tx_72 1 + 519569 520758 . 2 561,523 0,667 -chrXI 519569 520758 HC_gene_5388_tx_73 1 + 519569 520758 . 2 139,984 0,206 -chrXI 519569 520758 HC_gene_5388_tx_74 1 + 519569 520758 . 2 401,740 0,450 -chrXI 519569 520858 HC_gene_5388_tx_75 145 + 519569 520858 . 1 1290 0 -chrXI 519569 520858 HC_gene_5388_tx_76 1 + 519569 520858 . 2 1094,121 0,1169 -chrXI 519569 520858 HC_gene_5388_tx_77 1 + 519569 520858 . 2 205,1035 0,255 -chrXI 519665 520758 HC_gene_5388_tx_78 23 + 519665 520758 . 1 1094 0 -chrXI 519665 520758 HC_gene_5388_tx_79 1 + 519665 520758 . 2 656,240 0,854 -chrXI 519665 520858 HC_gene_5388_tx_80 56 + 519665 520858 . 1 1194 0 -chrXI 519665 520858 HC_gene_5388_tx_81 1 + 519665 520858 . 2 293,653 0,541 -chrXI 519719 520758 HC_gene_5388_tx_82 150 + 519719 520758 . 1 1040 0 -chrXI 519719 520758 HC_gene_5388_tx_83 1 + 519719 520758 . 2 490,387 0,653 -chrXI 519719 520758 HC_gene_5388_tx_84 1 + 519719 520758 . 2 68,770 0,270 -chrXI 519719 520758 HC_gene_5388_tx_85 1 + 519719 520758 . 2 697,280 0,760 -chrXI 519719 520758 HC_gene_5388_tx_86 1 + 519719 520758 . 2 609,317 0,723 -chrXI 519719 520758 HC_gene_5388_tx_87 1 + 519719 520758 . 2 796,177 0,863 -chrXI 519719 520858 HC_gene_5388_tx_88 261 + 519719 520858 . 1 1140 0 -chrXI 519719 520858 HC_gene_5388_tx_89 1 + 519719 520858 . 2 181,895 0,245 -chrXI 519719 520858 HC_gene_5388_tx_90 1 + 519719 520858 . 2 616,465 0,675 -chrXI 519719 520858 HC_gene_5388_tx_91 1 + 519719 520858 . 2 351,552 0,588 -chrXI 519719 520858 HC_gene_5388_tx_92 1 + 519719 520858 . 2 181,909 0,231 -chrXI 519719 520858 HC_gene_5388_tx_93 1 + 519719 520858 . 2 551,487 0,653 -chrXI 519929 520758 HC_gene_5388_tx_94 107 + 519929 520758 . 1 830 0 -chrXI 519929 520758 HC_gene_5388_tx_95 1 + 519929 520758 . 2 187,528 0,302 -chrXI 519929 520758 HC_gene_5388_tx_96 1 + 519929 520758 . 2 689,92 0,738 -chrXI 519929 520758 HC_gene_5388_tx_97 1 + 519929 520758 . 2 406,317 0,513 -chrXI 519929 520858 HC_gene_5388_tx_98 160 + 519929 520858 . 1 930 0 -chrXI 519929 520858 HC_gene_5388_tx_99 1 + 519929 520858 . 2 619,269 0,661 -chrXI 519929 520858 HC_gene_5388_tx_100 1 + 519929 520858 . 2 634,123 0,807 -chrXI 519929 520858 HC_gene_5388_tx_101 1 + 519929 520858 . 2 406,417 0,513 -chrXI 519929 520858 HC_gene_5388_tx_102 1 + 519929 520858 . 2 799,66 0,864 -chrXI 519929 520858 HC_gene_5388_tx_103 1 + 519929 520858 . 2 187,664 0,266 -chrXI 520014 520758 HC_gene_5388_tx_104 27 + 520014 520758 . 1 745 0 -chrXI 520014 520858 HC_gene_5388_tx_105 42 + 520014 520858 . 1 845 0 -chrXI 520014 520858 HC_gene_5388_tx_106 1 + 520014 520858 . 2 102,573 0,272 -chrXI 520070 520758 HC_gene_5388_tx_107 82 + 520070 520758 . 1 689 0 -chrXI 520070 520858 HC_gene_5388_tx_108 211 + 520070 520858 . 1 789 0 -chrXI 520070 520858 HC_gene_5388_tx_109 1 + 520070 520858 . 2 251,450 0,339 -chrXI 520070 520858 HC_gene_5388_tx_110 1 + 520070 520858 . 2 392,340 0,449 -chrXI 520070 520858 HC_gene_5388_tx_111 1 + 520070 520858 . 2 674,66 0,723 -chrXI 520070 520858 HC_gene_5388_tx_112 1 + 520070 520858 . 2 445,277 0,512 -chrXI 520070 520858 HC_gene_5388_tx_113 1 + 520070 520858 . 2 289,455 0,334 -chrXI 520275 520758 HC_gene_5388_tx_114 48 + 520275 520758 . 1 484 0 -chrXI 520275 520858 HC_gene_5388_tx_115 133 + 520275 520858 . 1 584 0 -chrXI 520275 520858 HC_gene_5388_tx_116 1 + 520275 520858 . 2 46,465 0,119 -chrXI 520367 520758 HC_gene_5388_tx_117 123 + 520367 520758 . 1 392 0 -chrXI 520367 520858 HC_gene_5388_tx_118 266 + 520367 520858 . 1 492 0 -chrXI 520574 520758 HC_gene_5388_tx_119 61 + 520574 520758 . 1 185 0 -chrXI 520574 520858 HC_gene_5388_tx_120 111 + 520574 520858 . 1 285 0 -chrXI 520741 521217 HC_gene_5650_tx_1 27 - 520741 521217 . 1 477 0 -chrXI 520741 521335 HC_gene_5650_tx_2 74 - 520741 521335 . 1 595 0 -chrXI 520741 521490 HC_gene_5650_tx_4 2 - 520741 521490 . 1 750 0 -chrXI 520741 521600 HC_gene_5650_tx_5 23 - 520741 521600 . 1 860 0 -chrXI 520741 521745 HC_gene_5650_tx_6 184 - 520741 521745 . 1 1005 0 -chrXI 520741 521745 HC_gene_5650_tx_7 1 - 520741 521745 . 2 657,218 0,787 -chrXI 520741 521745 HC_gene_5650_tx_8 1 - 520741 521745 . 2 486,451 0,554 -chrXI 520741 521745 HC_gene_5650_tx_9 1 - 520741 521745 . 2 793,79 0,926 -chrXI 520741 521745 HC_gene_5650_tx_10 1 - 520741 521745 . 2 550,369 0,636 -chrXI 520830 521335 HC_gene_5650_tx_3 22 - 520830 521335 . 1 506 0 -chrXI 520830 521490 HC_gene_5650_tx_11 1 - 520830 521490 . 1 661 0 -chrXI 520830 521600 HC_gene_5650_tx_12 10 - 520830 521600 . 1 771 0 -chrXI 520830 521600 HC_gene_5650_tx_13 2 - 520830 521600 . 2 568,147 0,624 -chrXI 520830 521745 HC_gene_5650_tx_14 66 - 520830 521745 . 1 916 0 -chrXI 520830 521745 HC_gene_5650_tx_15 1 - 520830 521745 . 2 607,120 0,796 -chrXI 520830 521745 HC_gene_5650_tx_16 1 - 520830 521745 . 2 580,92 0,824 -chrXI 521870 524002 HC_gene_5651_tx_1 3 - 521870 524002 . 1 2133 0 -chrXI 521945 523416 HC_gene_5389_tx_1 21 + 521945 523416 . 1 1472 0 -chrXI 521945 523416 HC_gene_5389_tx_2 1 + 521945 523416 . 2 514,244 0,1228 -chrXI 523303 524002 HC_gene_5651_tx_2 20 - 523303 524002 . 1 700 0 -chrXI 524126 524678 HC_gene_5652_tx_1 5 - 524126 524678 . 1 553 0 -chrXI 524126 525084 HC_gene_5652_tx_2 25 - 524126 525084 . 1 959 0 -chrXI 524153 525375 HC_gene_5390_tx_1 69 + 524153 525375 . 1 1223 0 -chrXI 524153 525375 HC_gene_5390_tx_2 1 + 524153 525375 . 2 421,663 0,560 -chrXI 525217 525809 HC_gene_5653_tx_1 2 - 525217 525809 . 1 593 0 -chrXI 525217 526660 HC_gene_5653_tx_17 3 - 525217 526660 . 1 1444 0 -chrXI 525218 526090 HC_gene_5653_tx_18 1 - 525218 526090 . 1 873 0 -chrXI 525219 525809 HC_gene_5653_tx_2 1 - 525219 525809 . 1 591 0 -chrXI 525219 526660 HC_gene_5653_tx_19 2 - 525219 526660 . 1 1442 0 -chrXI 525221 525809 HC_gene_5653_tx_3 1 - 525221 525809 . 1 589 0 -chrXI 525225 526660 HC_gene_5653_tx_20 1 - 525225 526660 . 1 1436 0 -chrXI 525226 526660 HC_gene_5653_tx_21 2 - 525226 526660 . 1 1435 0 -chrXI 525227 526660 HC_gene_5653_tx_22 1 - 525227 526660 . 1 1434 0 -chrXI 525228 526183 HC_gene_5653_tx_23 1 - 525228 526183 . 2 651,197 0,759 -chrXI 525230 526660 HC_gene_5653_tx_24 1 - 525230 526660 . 1 1431 0 -chrXI 525231 526183 HC_gene_5653_tx_25 1 - 525231 526183 . 1 953 0 -chrXI 525231 526660 HC_gene_5653_tx_26 2 - 525231 526660 . 1 1430 0 -chrXI 525232 526381 HC_gene_5653_tx_27 2 - 525232 526381 . 1 1150 0 -chrXI 525232 526660 HC_gene_5653_tx_28 1 - 525232 526660 . 2 611,710 0,719 -chrXI 525232 526660 HC_gene_5653_tx_29 2 - 525232 526660 . 1 1429 0 -chrXI 525234 526660 HC_gene_5653_tx_30 3 - 525234 526660 . 1 1427 0 -chrXI 525235 525809 HC_gene_5653_tx_4 1 - 525235 525809 . 1 575 0 -chrXI 525235 526660 HC_gene_5653_tx_31 1 - 525235 526660 . 1 1426 0 -chrXI 525237 526381 HC_gene_5653_tx_32 1 - 525237 526381 . 1 1145 0 -chrXI 525238 525809 HC_gene_5653_tx_5 1 - 525238 525809 . 1 572 0 -chrXI 525238 526660 HC_gene_5653_tx_33 1 - 525238 526660 . 2 1019,308 0,1115 -chrXI 525239 526660 HC_gene_5653_tx_34 1 - 525239 526660 . 1 1422 0 -chrXI 525240 526090 HC_gene_5653_tx_35 1 - 525240 526090 . 1 851 0 -chrXI 525240 526183 HC_gene_5653_tx_36 1 - 525240 526183 . 1 944 0 -chrXI 525244 526381 HC_gene_5653_tx_37 1 - 525244 526381 . 1 1138 0 -chrXI 525249 526090 HC_gene_5653_tx_38 1 - 525249 526090 . 2 46,745 0,97 -chrXI 525249 526660 HC_gene_5653_tx_39 2 - 525249 526660 . 1 1412 0 -chrXI 525249 526660 HC_gene_5653_tx_40 1 - 525249 526660 . 2 64,1306 0,106 -chrXI 525251 526660 HC_gene_5653_tx_41 1 - 525251 526660 . 1 1410 0 -chrXI 525252 526660 HC_gene_5653_tx_42 1 - 525252 526660 . 1 1409 0 -chrXI 525253 525809 HC_gene_5653_tx_6 3 - 525253 525809 . 1 557 0 -chrXI 525253 526090 HC_gene_5653_tx_43 1 - 525253 526090 . 1 838 0 -chrXI 525253 526183 HC_gene_5653_tx_44 2 - 525253 526183 . 1 931 0 -chrXI 525253 526381 HC_gene_5653_tx_45 1 - 525253 526381 . 1 1129 0 -chrXI 525253 526660 HC_gene_5653_tx_46 9 - 525253 526660 . 1 1408 0 -chrXI 525253 526660 HC_gene_5653_tx_47 1 - 525253 526660 . 2 442,907 0,501 -chrXI 525254 525809 HC_gene_5653_tx_7 1 - 525254 525809 . 1 556 0 -chrXI 525254 526660 HC_gene_5653_tx_48 2 - 525254 526660 . 1 1407 0 -chrXI 525256 526090 HC_gene_5653_tx_49 1 - 525256 526090 . 1 835 0 -chrXI 525258 525809 HC_gene_5653_tx_8 1 - 525258 525809 . 1 552 0 -chrXI 525259 525809 HC_gene_5653_tx_9 1 - 525259 525809 . 1 551 0 -chrXI 525259 526090 HC_gene_5653_tx_50 1 - 525259 526090 . 1 832 0 -chrXI 525259 526381 HC_gene_5653_tx_51 1 - 525259 526381 . 1 1123 0 -chrXI 525261 526660 HC_gene_5653_tx_52 1 - 525261 526660 . 1 1400 0 -chrXI 525262 525809 HC_gene_5653_tx_10 1 - 525262 525809 . 1 548 0 -chrXI 525263 525809 HC_gene_5653_tx_11 5 - 525263 525809 . 1 547 0 -chrXI 525263 526090 HC_gene_5653_tx_53 1 - 525263 526090 . 1 828 0 -chrXI 525263 526183 HC_gene_5653_tx_54 1 - 525263 526183 . 1 921 0 -chrXI 525263 526660 HC_gene_5653_tx_55 4 - 525263 526660 . 1 1398 0 -chrXI 525264 525809 HC_gene_5653_tx_12 1 - 525264 525809 . 1 546 0 -chrXI 525264 526090 HC_gene_5653_tx_56 1 - 525264 526090 . 1 827 0 -chrXI 525264 526183 HC_gene_5653_tx_57 1 - 525264 526183 . 1 920 0 -chrXI 525264 526381 HC_gene_5653_tx_58 1 - 525264 526381 . 1 1118 0 -chrXI 525264 526660 HC_gene_5653_tx_59 2 - 525264 526660 . 1 1397 0 -chrXI 525266 526090 HC_gene_5653_tx_60 1 - 525266 526090 . 1 825 0 -chrXI 525266 526660 HC_gene_5653_tx_61 1 - 525266 526660 . 1 1395 0 -chrXI 525267 526660 HC_gene_5653_tx_62 1 - 525267 526660 . 1 1394 0 -chrXI 525268 525809 HC_gene_5653_tx_13 3 - 525268 525809 . 1 542 0 -chrXI 525268 526090 HC_gene_5653_tx_63 1 - 525268 526090 . 1 823 0 -chrXI 525268 526660 HC_gene_5653_tx_64 1 - 525268 526660 . 2 569,761 0,632 -chrXI 525268 526660 HC_gene_5653_tx_65 2 - 525268 526660 . 1 1393 0 -chrXI 525269 526660 HC_gene_5653_tx_66 1 - 525269 526660 . 1 1392 0 -chrXI 525270 525809 HC_gene_5653_tx_14 1 - 525270 525809 . 1 540 0 -chrXI 525270 526381 HC_gene_5653_tx_67 1 - 525270 526381 . 1 1112 0 -chrXI 525271 525809 HC_gene_5653_tx_15 2 - 525271 525809 . 1 539 0 -chrXI 525271 526090 HC_gene_5653_tx_68 1 - 525271 526090 . 1 820 0 -chrXI 525271 526660 HC_gene_5653_tx_69 2 - 525271 526660 . 1 1390 0 -chrXI 525272 526660 HC_gene_5653_tx_70 2 - 525272 526660 . 1 1389 0 -chrXI 525273 525809 HC_gene_5653_tx_16 4 - 525273 525809 . 1 537 0 -chrXI 525273 526090 HC_gene_5653_tx_71 1 - 525273 526090 . 1 818 0 -chrXI 525273 526381 HC_gene_5653_tx_72 2 - 525273 526381 . 1 1109 0 -chrXI 525273 526660 HC_gene_5653_tx_73 7 - 525273 526660 . 1 1388 0 -chrXI 525274 526660 HC_gene_5653_tx_74 2 - 525274 526660 . 1 1387 0 -chrXI 526767 526993 HC_gene_5654_tx_1 1 - 526767 526993 . 1 227 0 -chrXI 526767 527125 HC_gene_5654_tx_2 3 - 526767 527125 . 1 359 0 -chrXI 526767 527259 HC_gene_5654_tx_3 43 - 526767 527259 . 1 493 0 -chrXI 526865 530531 HC_gene_5391_tx_1 5 + 526865 530531 . 1 3667 0 -chrXI 527436 530531 HC_gene_5391_tx_2 1 + 527436 530531 . 1 3096 0 -chrXI 530828 532294 HC_gene_5392_tx_1 29 + 530828 532294 . 1 1467 0 -chrXI 530828 532346 HC_gene_5392_tx_2 1 + 530828 532346 . 1 1519 0 -chrXI 532091 532430 HC_gene_5655_tx_1 1 - 532091 532430 . 1 340 0 -chrXI 532091 533544 HC_gene_5655_tx_2 1 - 532091 533544 . 1 1454 0 -chrXI 532181 532430 HC_gene_5655_tx_4 10 - 532181 532430 . 1 250 0 -chrXI 532181 533195 HC_gene_5655_tx_5 4 - 532181 533195 . 1 1015 0 -chrXI 532181 533195 HC_gene_5655_tx_6 1 - 532181 533195 . 2 278,434 0,581 -chrXI 532181 533544 HC_gene_5655_tx_3 30 - 532181 533544 . 1 1364 0 -chrXI 533546 533881 MC_gene_5656_tx_1 1 - 533546 533881 . 1 336 0 -chrXI 533578 534075 HC_gene_5393_tx_1 8 + 533578 534075 . 1 498 0 -chrXI 533578 534161 HC_gene_5393_tx_2 1 + 533578 534161 . 1 584 0 -chrXI 533806 534075 HC_gene_5393_tx_3 4 + 533806 534075 . 1 270 0 -chrXI 533806 534161 HC_gene_5393_tx_4 1 + 533806 534161 . 1 356 0 -chrXI 533927 534075 HC_gene_5393_tx_5 1 + 533927 534075 . 1 149 0 -chrXI 533929 534075 HC_gene_5393_tx_6 2 + 533929 534075 . 1 147 0 -chrXI 533929 534161 HC_gene_5393_tx_7 9 + 533929 534161 . 1 233 0 -chrXI 533929 535115 HC_gene_5393_tx_8 1 + 533929 535115 . 1 1187 0 -chrXI 533929 535342 HC_gene_5393_tx_9 1 + 533929 535342 . 1 1414 0 -chrXI 533997 534454 HC_gene_5657_tx_1 8 - 533997 534454 . 1 458 0 -chrXI 533997 534526 HC_gene_5657_tx_2 2 - 533997 534526 . 1 530 0 -chrXI 533997 535356 HC_gene_5657_tx_3 3 - 533997 535356 . 1 1360 0 -chrXI 534097 534946 HC_gene_5393_tx_10 4 + 534097 534946 . 1 850 0 -chrXI 534097 535115 HC_gene_5393_tx_11 3 + 534097 535115 . 1 1019 0 -chrXI 534097 535342 HC_gene_5393_tx_12 2 + 534097 535342 . 1 1246 0 -chrXI 534097 535536 HC_gene_5393_tx_13 7 + 534097 535536 . 1 1440 0 -chrXI 535419 538850 HC_gene_5658_tx_1 1 - 535419 538850 . 1 3432 0 -chrXI 540885 543996 MC_gene_5659_tx_1 1 - 540885 543996 . 1 3112 0 -chrXI 547089 547980 MC_gene_5660_tx_1 1 - 547089 547980 . 1 892 0 -chrXI 548173 549397 HC_gene_5394_tx_1 19 + 548173 549397 . 1 1225 0 -chrXI 548173 549397 HC_gene_5394_tx_2 1 + 548173 549397 . 2 740,431 0,794 -chrXI 549541 551427 HC_gene_5395_tx_1 2 + 549541 551427 . 1 1887 0 -chrXI 549541 551434 HC_gene_5395_tx_2 1 + 549541 551434 . 1 1894 0 -chrXI 549541 551435 HC_gene_5395_tx_3 5 + 549541 551435 . 1 1895 0 -chrXI 549541 551437 HC_gene_5395_tx_4 5 + 549541 551437 . 1 1897 0 -chrXI 549541 551437 HC_gene_5395_tx_5 1 + 549541 551437 . 2 1699,132 0,1765 -chrXI 549541 551441 HC_gene_5395_tx_6 2 + 549541 551441 . 1 1901 0 -chrXI 549541 551442 HC_gene_5395_tx_7 2 + 549541 551442 . 1 1902 0 -chrXI 549541 551450 HC_gene_5395_tx_8 1 + 549541 551450 . 1 1910 0 -chrXI 551611 552443 HC_gene_5396_tx_1 690 + 551611 552443 . 2 70,441 0,392 -chrXI 551611 552443 HC_gene_5396_tx_2 3 + 551611 552443 . 2 74,441 0,392 -chrXI 551611 552443 HC_gene_5396_tx_3 59 + 551611 552443 . 1 833 0 -chrXI 551611 552443 HC_gene_5396_tx_4 7 + 551611 552443 . 2 85,429 0,404 -chrXI 551611 552443 HC_gene_5396_tx_5 3 + 551611 552443 . 2 70,421 0,412 -chrXI 551734 552368 LC_gene_5661_tx_1 1 - 551734 552368 . 1 635 0 -chrXI 552123 552443 HC_gene_5396_tx_6 206 + 552123 552443 . 1 321 0 -chrXI 552711 554733 HC_gene_5397_tx_1 14 + 552711 554733 . 1 2023 0 -chrXI 554279 554628 HC_gene_5662_tx_1 3 - 554279 554628 . 1 350 0 -chrXI 554958 556264 HC_gene_5398_tx_1 2 + 554958 556264 . 1 1307 0 -chrXI 554958 556265 HC_gene_5398_tx_2 4 + 554958 556265 . 1 1308 0 -chrXI 554958 556266 HC_gene_5398_tx_3 26 + 554958 556266 . 1 1309 0 -chrXI 554958 556267 HC_gene_5398_tx_4 5 + 554958 556267 . 1 1310 0 -chrXI 554958 556268 HC_gene_5398_tx_5 6 + 554958 556268 . 1 1311 0 -chrXI 554958 556269 HC_gene_5398_tx_6 26 + 554958 556269 . 1 1312 0 -chrXI 554958 556269 HC_gene_5398_tx_7 1 + 554958 556269 . 2 978,278 0,1034 -chrXI 554958 556269 HC_gene_5398_tx_8 1 + 554958 556269 . 2 429,833 0,479 -chrXI 554958 556270 HC_gene_5398_tx_9 17 + 554958 556270 . 1 1313 0 -chrXI 554958 556271 HC_gene_5398_tx_10 9 + 554958 556271 . 1 1314 0 -chrXI 554958 556272 HC_gene_5398_tx_11 2 + 554958 556272 . 1 1315 0 -chrXI 554958 556273 HC_gene_5398_tx_12 3 + 554958 556273 . 1 1316 0 -chrXI 554958 556274 HC_gene_5398_tx_13 42 + 554958 556274 . 1 1317 0 -chrXI 554958 556275 HC_gene_5398_tx_14 28 + 554958 556275 . 1 1318 0 -chrXI 554958 556275 HC_gene_5398_tx_15 1 + 554958 556275 . 2 580,705 0,613 -chrXI 554958 556276 HC_gene_5398_tx_16 142 + 554958 556276 . 1 1319 0 -chrXI 554958 556276 HC_gene_5398_tx_17 1 + 554958 556276 . 2 251,971 0,348 -chrXI 554958 556276 HC_gene_5398_tx_18 1 + 554958 556276 . 2 767,508 0,811 -chrXI 554958 556276 HC_gene_5398_tx_19 1 + 554958 556276 . 2 164,991 0,328 -chrXI 554958 556277 HC_gene_5398_tx_20 35 + 554958 556277 . 1 1320 0 -chrXI 554958 556278 HC_gene_5398_tx_21 5 + 554958 556278 . 1 1321 0 -chrXI 554958 556279 HC_gene_5398_tx_22 1 + 554958 556279 . 1 1322 0 -chrXI 554958 556281 HC_gene_5398_tx_23 2 + 554958 556281 . 1 1324 0 -chrXI 554958 556282 HC_gene_5398_tx_24 6 + 554958 556282 . 1 1325 0 -chrXI 554958 556284 HC_gene_5398_tx_25 4 + 554958 556284 . 1 1327 0 -chrXI 554958 556286 HC_gene_5398_tx_26 1 + 554958 556286 . 1 1329 0 -chrXI 554958 556288 HC_gene_5398_tx_27 1 + 554958 556288 . 1 1331 0 -chrXI 554958 556289 HC_gene_5398_tx_28 1 + 554958 556289 . 1 1332 0 -chrXI 554958 556290 HC_gene_5398_tx_29 3 + 554958 556290 . 1 1333 0 -chrXI 554958 556291 HC_gene_5398_tx_30 2 + 554958 556291 . 1 1334 0 -chrXI 554958 556292 HC_gene_5398_tx_31 1 + 554958 556292 . 1 1335 0 -chrXI 554958 556292 HC_gene_5398_tx_32 1 + 554958 556292 . 2 255,833 0,502 -chrXI 554958 556294 HC_gene_5398_tx_33 3 + 554958 556294 . 1 1337 0 -chrXI 554958 556296 HC_gene_5398_tx_34 1 + 554958 556296 . 1 1339 0 -chrXI 554958 556298 HC_gene_5398_tx_35 4 + 554958 556298 . 1 1341 0 -chrXI 554958 556304 HC_gene_5398_tx_36 1 + 554958 556304 . 1 1347 0 -chrXI 554958 556311 HC_gene_5398_tx_37 1 + 554958 556311 . 1 1354 0 -chrXI 554958 556333 HC_gene_5398_tx_38 1 + 554958 556333 . 1 1376 0 -chrXI 554958 556335 HC_gene_5398_tx_39 2 + 554958 556335 . 1 1378 0 -chrXI 554958 556336 HC_gene_5398_tx_40 2 + 554958 556336 . 1 1379 0 -chrXI 554958 556340 HC_gene_5398_tx_41 1 + 554958 556340 . 2 1213,55 0,1328 -chrXI 554958 556342 HC_gene_5398_tx_42 1 + 554958 556342 . 1 1385 0 -chrXI 554958 556343 HC_gene_5398_tx_43 1 + 554958 556343 . 1 1386 0 -chrXI 554958 556348 HC_gene_5398_tx_44 1 + 554958 556348 . 1 1391 0 -chrXI 554958 556351 HC_gene_5398_tx_45 1 + 554958 556351 . 1 1394 0 -chrXI 554958 556355 HC_gene_5398_tx_46 1 + 554958 556355 . 1 1398 0 -chrXI 554958 556361 HC_gene_5398_tx_47 1 + 554958 556361 . 1 1404 0 -chrXI 554958 556371 HC_gene_5398_tx_48 1 + 554958 556371 . 1 1414 0 -chrXI 554958 556381 HC_gene_5398_tx_49 1 + 554958 556381 . 1 1424 0 -chrXI 554958 556382 HC_gene_5398_tx_50 2 + 554958 556382 . 1 1425 0 -chrXI 554958 556383 HC_gene_5398_tx_51 2 + 554958 556383 . 1 1426 0 -chrXI 554958 556387 HC_gene_5398_tx_52 2 + 554958 556387 . 1 1430 0 -chrXI 554958 556389 HC_gene_5398_tx_53 1 + 554958 556389 . 1 1432 0 -chrXI 554958 556390 HC_gene_5398_tx_54 1 + 554958 556390 . 1 1433 0 -chrXI 554958 556392 HC_gene_5398_tx_55 2 + 554958 556392 . 1 1435 0 -chrXI 554958 556394 HC_gene_5398_tx_56 1 + 554958 556394 . 1 1437 0 -chrXI 554958 556396 HC_gene_5398_tx_57 3 + 554958 556396 . 1 1439 0 -chrXI 554958 556397 HC_gene_5398_tx_58 1 + 554958 556397 . 1 1440 0 -chrXI 554958 556398 HC_gene_5398_tx_59 4 + 554958 556398 . 1 1441 0 -chrXI 554958 556399 HC_gene_5398_tx_60 2 + 554958 556399 . 1 1442 0 -chrXI 554958 556404 HC_gene_5398_tx_61 2 + 554958 556404 . 1 1447 0 -chrXI 554958 556405 HC_gene_5398_tx_62 4 + 554958 556405 . 1 1448 0 -chrXI 554958 556406 HC_gene_5398_tx_63 2 + 554958 556406 . 1 1449 0 -chrXI 554958 556408 HC_gene_5398_tx_64 1 + 554958 556408 . 1 1451 0 -chrXI 554958 556411 HC_gene_5398_tx_65 2 + 554958 556411 . 1 1454 0 -chrXI 554958 556412 HC_gene_5398_tx_66 5 + 554958 556412 . 1 1455 0 -chrXI 554958 556413 HC_gene_5398_tx_67 7 + 554958 556413 . 1 1456 0 -chrXI 554958 556414 HC_gene_5398_tx_68 2 + 554958 556414 . 1 1457 0 -chrXI 554958 556418 HC_gene_5398_tx_69 1 + 554958 556418 . 1 1461 0 -chrXI 554958 556419 HC_gene_5398_tx_70 3 + 554958 556419 . 1 1462 0 -chrXI 554958 556420 HC_gene_5398_tx_71 2 + 554958 556420 . 1 1463 0 -chrXI 554958 556421 HC_gene_5398_tx_72 4 + 554958 556421 . 1 1464 0 -chrXI 554958 556422 HC_gene_5398_tx_73 4 + 554958 556422 . 1 1465 0 -chrXI 554958 556423 HC_gene_5398_tx_74 2 + 554958 556423 . 1 1466 0 -chrXI 554958 556424 HC_gene_5398_tx_75 1 + 554958 556424 . 1 1467 0 -chrXI 554958 556429 HC_gene_5398_tx_76 1 + 554958 556429 . 1 1472 0 -chrXI 554958 556434 HC_gene_5398_tx_77 4 + 554958 556434 . 1 1477 0 -chrXI 554958 556435 HC_gene_5398_tx_78 10 + 554958 556435 . 1 1478 0 -chrXI 554958 556436 HC_gene_5398_tx_79 2 + 554958 556436 . 1 1479 0 -chrXI 554958 556438 HC_gene_5398_tx_80 4 + 554958 556438 . 1 1481 0 -chrXI 554958 556439 HC_gene_5398_tx_81 4 + 554958 556439 . 1 1482 0 -chrXI 554958 556440 HC_gene_5398_tx_82 4 + 554958 556440 . 1 1483 0 -chrXI 554958 556443 HC_gene_5398_tx_83 1 + 554958 556443 . 1 1486 0 -chrXI 554958 556444 HC_gene_5398_tx_84 1 + 554958 556444 . 1 1487 0 -chrXI 554958 556446 HC_gene_5398_tx_85 1 + 554958 556446 . 1 1489 0 -chrXI 554958 556452 HC_gene_5398_tx_86 6 + 554958 556452 . 1 1495 0 -chrXI 554958 556453 HC_gene_5398_tx_87 1 + 554958 556453 . 1 1496 0 -chrXI 554958 556454 HC_gene_5398_tx_88 1 + 554958 556454 . 1 1497 0 -chrXI 554958 556455 HC_gene_5398_tx_89 14 + 554958 556455 . 1 1498 0 -chrXI 554958 556459 HC_gene_5398_tx_90 5 + 554958 556459 . 1 1502 0 -chrXI 554958 556460 HC_gene_5398_tx_91 1 + 554958 556460 . 1 1503 0 -chrXI 555162 556266 HC_gene_5398_tx_92 3 + 555162 556266 . 1 1105 0 -chrXI 555162 556267 HC_gene_5398_tx_93 1 + 555162 556267 . 1 1106 0 -chrXI 555162 556269 HC_gene_5398_tx_94 1 + 555162 556269 . 1 1108 0 -chrXI 555162 556271 HC_gene_5398_tx_95 1 + 555162 556271 . 1 1110 0 -chrXI 555162 556274 HC_gene_5398_tx_96 2 + 555162 556274 . 1 1113 0 -chrXI 555162 556275 HC_gene_5398_tx_97 3 + 555162 556275 . 1 1114 0 -chrXI 555162 556276 HC_gene_5398_tx_98 8 + 555162 556276 . 1 1115 0 -chrXI 555162 556277 HC_gene_5398_tx_99 1 + 555162 556277 . 1 1116 0 -chrXI 555162 556281 HC_gene_5398_tx_100 1 + 555162 556281 . 1 1120 0 -chrXI 555162 556286 HC_gene_5398_tx_101 1 + 555162 556286 . 1 1125 0 -chrXI 555162 556310 HC_gene_5398_tx_102 1 + 555162 556310 . 1 1149 0 -chrXI 555162 556336 HC_gene_5398_tx_103 1 + 555162 556336 . 1 1175 0 -chrXI 555162 556366 HC_gene_5398_tx_104 1 + 555162 556366 . 1 1205 0 -chrXI 555162 556382 HC_gene_5398_tx_105 1 + 555162 556382 . 1 1221 0 -chrXI 555162 556397 HC_gene_5398_tx_106 1 + 555162 556397 . 1 1236 0 -chrXI 555162 556412 HC_gene_5398_tx_107 1 + 555162 556412 . 1 1251 0 -chrXI 555162 556417 HC_gene_5398_tx_108 1 + 555162 556417 . 1 1256 0 -chrXI 555162 556435 HC_gene_5398_tx_109 1 + 555162 556435 . 1 1274 0 -chrXI 555162 556438 HC_gene_5398_tx_110 1 + 555162 556438 . 1 1277 0 -chrXI 555162 556455 HC_gene_5398_tx_111 4 + 555162 556455 . 1 1294 0 -chrXI 555162 556459 HC_gene_5398_tx_112 1 + 555162 556459 . 1 1298 0 -chrXI 555804 556265 HC_gene_5398_tx_113 3 + 555804 556265 . 1 462 0 -chrXI 555804 556266 HC_gene_5398_tx_114 10 + 555804 556266 . 1 463 0 -chrXI 555804 556268 HC_gene_5398_tx_115 1 + 555804 556268 . 1 465 0 -chrXI 555804 556269 HC_gene_5398_tx_116 3 + 555804 556269 . 1 466 0 -chrXI 555804 556270 HC_gene_5398_tx_117 4 + 555804 556270 . 1 467 0 -chrXI 555804 556271 HC_gene_5398_tx_118 2 + 555804 556271 . 1 468 0 -chrXI 555804 556273 HC_gene_5398_tx_119 3 + 555804 556273 . 1 470 0 -chrXI 555804 556274 HC_gene_5398_tx_120 7 + 555804 556274 . 1 471 0 -chrXI 555804 556275 HC_gene_5398_tx_121 11 + 555804 556275 . 1 472 0 -chrXI 555804 556276 HC_gene_5398_tx_122 51 + 555804 556276 . 1 473 0 -chrXI 555804 556277 HC_gene_5398_tx_123 18 + 555804 556277 . 1 474 0 -chrXI 555804 556278 HC_gene_5398_tx_124 4 + 555804 556278 . 1 475 0 -chrXI 555804 556281 HC_gene_5398_tx_125 1 + 555804 556281 . 1 478 0 -chrXI 555804 556282 HC_gene_5398_tx_126 2 + 555804 556282 . 1 479 0 -chrXI 555804 556284 HC_gene_5398_tx_127 1 + 555804 556284 . 1 481 0 -chrXI 555804 556286 HC_gene_5398_tx_128 4 + 555804 556286 . 1 483 0 -chrXI 555804 556298 HC_gene_5398_tx_129 1 + 555804 556298 . 1 495 0 -chrXI 555804 556312 HC_gene_5398_tx_130 1 + 555804 556312 . 1 509 0 -chrXI 555804 556316 HC_gene_5398_tx_131 2 + 555804 556316 . 1 513 0 -chrXI 555804 556351 HC_gene_5398_tx_132 1 + 555804 556351 . 1 548 0 -chrXI 555804 556353 HC_gene_5398_tx_133 1 + 555804 556353 . 1 550 0 -chrXI 555804 556358 HC_gene_5398_tx_134 1 + 555804 556358 . 1 555 0 -chrXI 555804 556380 HC_gene_5398_tx_135 1 + 555804 556380 . 1 577 0 -chrXI 555804 556397 HC_gene_5398_tx_136 1 + 555804 556397 . 1 594 0 -chrXI 555804 556412 HC_gene_5398_tx_137 2 + 555804 556412 . 1 609 0 -chrXI 555804 556413 HC_gene_5398_tx_138 2 + 555804 556413 . 1 610 0 -chrXI 555804 556414 HC_gene_5398_tx_139 1 + 555804 556414 . 1 611 0 -chrXI 555804 556416 HC_gene_5398_tx_140 2 + 555804 556416 . 1 613 0 -chrXI 555804 556417 HC_gene_5398_tx_141 1 + 555804 556417 . 1 614 0 -chrXI 555804 556419 HC_gene_5398_tx_142 1 + 555804 556419 . 1 616 0 -chrXI 555804 556421 HC_gene_5398_tx_143 2 + 555804 556421 . 1 618 0 -chrXI 555804 556422 HC_gene_5398_tx_144 1 + 555804 556422 . 1 619 0 -chrXI 555804 556423 HC_gene_5398_tx_145 2 + 555804 556423 . 1 620 0 -chrXI 555804 556435 HC_gene_5398_tx_146 1 + 555804 556435 . 1 632 0 -chrXI 555804 556438 HC_gene_5398_tx_147 1 + 555804 556438 . 1 635 0 -chrXI 555804 556439 HC_gene_5398_tx_148 4 + 555804 556439 . 1 636 0 -chrXI 555804 556441 HC_gene_5398_tx_149 1 + 555804 556441 . 1 638 0 -chrXI 555804 556452 HC_gene_5398_tx_150 2 + 555804 556452 . 1 649 0 -chrXI 555804 556454 HC_gene_5398_tx_151 1 + 555804 556454 . 1 651 0 -chrXI 555804 556455 HC_gene_5398_tx_152 4 + 555804 556455 . 1 652 0 -chrXI 555804 556459 HC_gene_5398_tx_153 2 + 555804 556459 . 1 656 0 -chrXI 556204 556352 MC_gene_5663_tx_1 1 - 556204 556352 . 1 149 0 -chrXI 556383 557279 MC_gene_5664_tx_1 1 - 556383 557279 . 1 897 0 -chrXI 556486 557298 HC_gene_5399_tx_1 2 + 556486 557298 . 1 813 0 -chrXI 556486 557409 HC_gene_5399_tx_2 8 + 556486 557409 . 1 924 0 -chrXI 556486 557417 HC_gene_5399_tx_3 1 + 556486 557417 . 1 932 0 -chrXI 556486 557426 HC_gene_5399_tx_4 1 + 556486 557426 . 1 941 0 -chrXI 556486 557442 HC_gene_5399_tx_5 1 + 556486 557442 . 1 957 0 -chrXI 556486 557444 HC_gene_5399_tx_6 1 + 556486 557444 . 1 959 0 -chrXI 556486 557445 HC_gene_5399_tx_7 1 + 556486 557445 . 1 960 0 -chrXI 556486 557446 HC_gene_5399_tx_8 1 + 556486 557446 . 1 961 0 -chrXI 556486 557448 HC_gene_5399_tx_9 2 + 556486 557448 . 1 963 0 -chrXI 556486 557449 HC_gene_5399_tx_10 3 + 556486 557449 . 1 964 0 -chrXI 556486 557450 HC_gene_5399_tx_11 1 + 556486 557450 . 1 965 0 -chrXI 556486 557451 HC_gene_5399_tx_12 1 + 556486 557451 . 1 966 0 -chrXI 556486 557458 HC_gene_5399_tx_13 2 + 556486 557458 . 1 973 0 -chrXI 556486 557683 HC_gene_5399_tx_14 9 + 556486 557683 . 1 1198 0 -chrXI 556486 559037 HC_gene_5399_tx_15 1 + 556486 559037 . 1 2552 0 -chrXI 556927 557213 MC_gene_5664_tx_2 1 - 556927 557213 . 1 287 0 -chrXI 557576 559037 HC_gene_5400_tx_1 30 + 557576 559037 . 1 1462 0 -chrXI 557576 559037 HC_gene_5400_tx_2 1 + 557576 559037 . 2 761,432 0,1030 -chrXI 557576 559141 HC_gene_5400_tx_3 13 + 557576 559141 . 1 1566 0 -chrXI 557576 559141 HC_gene_5400_tx_4 1 + 557576 559141 . 2 924,583 0,983 -chrXI 557761 559037 HC_gene_5400_tx_5 2 + 557761 559037 . 1 1277 0 -chrXI 557761 559141 HC_gene_5400_tx_6 1 + 557761 559141 . 1 1381 0 -chrXI 557994 559037 HC_gene_5400_tx_7 6 + 557994 559037 . 1 1044 0 -chrXI 557994 559141 HC_gene_5400_tx_8 1 + 557994 559141 . 1 1148 0 -chrXI 558952 559366 HC_gene_5665_tx_1 36 - 558952 559366 . 1 415 0 -chrXI 559601 560773 HC_gene_5401_tx_1 1 + 559601 560773 . 2 734,379 0,794 -chrXI 559601 560775 HC_gene_5401_tx_2 1 + 559601 560775 . 1 1175 0 -chrXI 559601 560783 HC_gene_5401_tx_3 2 + 559601 560783 . 1 1183 0 -chrXI 559601 560788 HC_gene_5401_tx_4 1 + 559601 560788 . 1 1188 0 -chrXI 559601 560791 HC_gene_5401_tx_5 3 + 559601 560791 . 1 1191 0 -chrXI 559601 560800 HC_gene_5401_tx_6 1 + 559601 560800 . 1 1200 0 -chrXI 559601 560803 HC_gene_5401_tx_7 1 + 559601 560803 . 1 1203 0 -chrXI 559601 560809 HC_gene_5401_tx_8 1 + 559601 560809 . 1 1209 0 -chrXI 559601 560819 HC_gene_5401_tx_9 1 + 559601 560819 . 1 1219 0 -chrXI 559601 560822 HC_gene_5401_tx_10 1 + 559601 560822 . 1 1222 0 -chrXI 559601 560838 HC_gene_5401_tx_11 1 + 559601 560838 . 1 1238 0 -chrXI 559601 560841 HC_gene_5401_tx_12 5 + 559601 560841 . 1 1241 0 -chrXI 559601 560842 HC_gene_5401_tx_13 1 + 559601 560842 . 1 1242 0 -chrXI 559601 560850 HC_gene_5401_tx_14 1 + 559601 560850 . 1 1250 0 -chrXI 559601 560852 HC_gene_5401_tx_15 1 + 559601 560852 . 1 1252 0 -chrXI 559601 560857 HC_gene_5401_tx_16 1 + 559601 560857 . 1 1257 0 -chrXI 559601 560860 HC_gene_5401_tx_17 1 + 559601 560860 . 1 1260 0 -chrXI 559601 560862 HC_gene_5401_tx_18 1 + 559601 560862 . 1 1262 0 -chrXI 559601 560873 HC_gene_5401_tx_19 1 + 559601 560873 . 1 1273 0 -chrXI 559601 560874 HC_gene_5401_tx_20 1 + 559601 560874 . 1 1274 0 -chrXI 559601 560875 HC_gene_5401_tx_21 1 + 559601 560875 . 1 1275 0 -chrXI 559601 560877 HC_gene_5401_tx_22 1 + 559601 560877 . 1 1277 0 -chrXI 559601 560879 HC_gene_5401_tx_23 3 + 559601 560879 . 1 1279 0 -chrXI 559601 560896 HC_gene_5401_tx_24 1 + 559601 560896 . 1 1296 0 -chrXI 559601 560897 HC_gene_5401_tx_25 1 + 559601 560897 . 1 1297 0 -chrXI 559601 560907 HC_gene_5401_tx_26 1 + 559601 560907 . 1 1307 0 -chrXI 559601 560908 HC_gene_5401_tx_27 1 + 559601 560908 . 1 1308 0 -chrXI 559601 560912 HC_gene_5401_tx_28 1 + 559601 560912 . 1 1312 0 -chrXI 559601 560913 HC_gene_5401_tx_29 1 + 559601 560913 . 1 1313 0 -chrXI 559601 560926 HC_gene_5401_tx_30 1 + 559601 560926 . 1 1326 0 -chrXI 559601 560941 HC_gene_5401_tx_31 1 + 559601 560941 . 1 1341 0 -chrXI 559601 560956 HC_gene_5401_tx_32 1 + 559601 560956 . 1 1356 0 -chrXI 559601 560958 HC_gene_5401_tx_33 1 + 559601 560958 . 1 1358 0 -chrXI 559601 560968 HC_gene_5401_tx_34 1 + 559601 560968 . 1 1368 0 -chrXI 559601 561070 HC_gene_5401_tx_35 1 + 559601 561070 . 1 1470 0 -chrXI 559601 561307 HC_gene_5401_tx_36 4 + 559601 561307 . 1 1707 0 -chrXI 559601 562423 HC_gene_5401_tx_37 1 + 559601 562423 . 1 2823 0 -chrXI 560193 560773 HC_gene_5401_tx_38 1 + 560193 560773 . 1 581 0 -chrXI 560193 560803 HC_gene_5401_tx_39 1 + 560193 560803 . 1 611 0 -chrXI 560193 560822 HC_gene_5401_tx_40 1 + 560193 560822 . 1 630 0 -chrXI 560193 560825 HC_gene_5401_tx_41 1 + 560193 560825 . 1 633 0 -chrXI 560193 560875 HC_gene_5401_tx_42 1 + 560193 560875 . 1 683 0 -chrXI 560193 560879 HC_gene_5401_tx_43 1 + 560193 560879 . 1 687 0 -chrXI 560193 560904 HC_gene_5401_tx_44 1 + 560193 560904 . 1 712 0 -chrXI 560193 560912 HC_gene_5401_tx_45 1 + 560193 560912 . 1 720 0 -chrXI 560193 560942 HC_gene_5401_tx_46 1 + 560193 560942 . 1 750 0 -chrXI 560437 560784 HC_gene_5401_tx_47 2 + 560437 560784 . 1 348 0 -chrXI 560437 560941 HC_gene_5401_tx_48 1 + 560437 560941 . 1 505 0 -chrXI 560686 561387 HC_gene_5666_tx_1 4 - 560686 561387 . 1 702 0 -chrXI 560686 562318 HC_gene_5666_tx_2 24 - 560686 562318 . 1 1633 0 -chrXI 560686 562318 HC_gene_5666_tx_3 1 - 560686 562318 . 2 874,618 0,1015 -chrXI 562513 565092 HC_gene_5402_tx_1 1 + 562513 565092 . 1 2580 0 -chrXI 562513 565200 HC_gene_5402_tx_2 3 + 562513 565200 . 1 2688 0 -chrXI 562513 565270 HC_gene_5402_tx_3 7 + 562513 565270 . 1 2758 0 -chrXI 563994 564988 LC_gene_5667_tx_1 1 - 563994 564988 . 1 995 0 -chrXI 565148 565663 HC_gene_5668_tx_1 24 - 565148 565663 . 1 516 0 -chrXI 565148 565908 HC_gene_5668_tx_2 208 - 565148 565908 . 1 761 0 -chrXI 566019 566477 HC_gene_5669_tx_1 25 - 566019 566477 . 1 459 0 -chrXI 566019 566572 HC_gene_5669_tx_2 13 - 566019 566572 . 1 554 0 -chrXI 566019 566663 HC_gene_5669_tx_3 17 - 566019 566663 . 1 645 0 -chrXI 566019 566805 HC_gene_5669_tx_4 17 - 566019 566805 . 1 787 0 -chrXI 566019 566899 HC_gene_5669_tx_5 12 - 566019 566899 . 1 881 0 -chrXI 566019 567020 HC_gene_5669_tx_6 17 - 566019 567020 . 1 1002 0 -chrXI 566019 567229 HC_gene_5669_tx_7 107 - 566019 567229 . 1 1211 0 -chrXI 567830 570331 HC_gene_5403_tx_1 7 + 567830 570331 . 1 2502 0 -chrXI 569986 570331 HC_gene_5403_tx_2 6 + 569986 570331 . 1 346 0 -chrXI 570214 570702 HC_gene_5670_tx_1 24 - 570214 570702 . 1 489 0 -chrXI 570214 570702 HC_gene_5670_tx_2 1 - 570214 570702 . 2 259,166 0,323 -chrXI 570214 570775 HC_gene_5670_tx_3 12 - 570214 570775 . 1 562 0 -chrXI 570214 570958 HC_gene_5670_tx_5 141 - 570214 570958 . 1 745 0 -chrXI 570214 570958 HC_gene_5670_tx_6 1 - 570214 570958 . 2 175,422 0,323 -chrXI 570214 570958 HC_gene_5670_tx_7 1 - 570214 570958 . 2 216,449 0,296 -chrXI 570326 570775 HC_gene_5670_tx_4 1 - 570326 570775 . 1 450 0 -chrXI 570392 570867 HC_gene_5404_tx_1 8 + 570392 570867 . 1 476 0 -chrXI 571458 573443 HC_gene_5405_tx_1 8 + 571458 573443 . 1 1986 0 -chrXI 571458 573443 HC_gene_5405_tx_2 1 + 571458 573443 . 2 391,1494 0,492 -chrXI 571659 573443 HC_gene_5405_tx_3 2 + 571659 573443 . 1 1785 0 -chrXI 572236 573443 HC_gene_5405_tx_4 4 + 572236 573443 . 1 1208 0 -chrXI 573345 573737 MC_gene_5671_tx_1 1 - 573345 573737 . 1 393 0 -chrXI 573569 574757 HC_gene_5406_tx_1 54 + 573569 574757 . 1 1189 0 -chrXI 573569 574757 HC_gene_5406_tx_2 1 + 573569 574757 . 2 836,303 0,886 -chrXI 573761 574757 HC_gene_5406_tx_3 7 + 573761 574757 . 1 997 0 -chrXI 573902 574757 HC_gene_5406_tx_4 6 + 573902 574757 . 1 856 0 -chrXI 573975 574757 HC_gene_5406_tx_5 4 + 573975 574757 . 1 783 0 -chrXI 574045 574757 HC_gene_5406_tx_6 6 + 574045 574757 . 1 713 0 -chrXI 574662 575049 HC_gene_5672_tx_1 14 - 574662 575049 . 1 388 0 -chrXI 574662 575663 HC_gene_5672_tx_2 15 - 574662 575663 . 1 1002 0 -chrXI 574662 576039 HC_gene_5672_tx_3 1 - 574662 576039 . 2 370,752 0,626 -chrXI 574662 576039 HC_gene_5672_tx_4 84 - 574662 576039 . 1 1378 0 -chrXI 574662 576039 HC_gene_5672_tx_5 1 - 574662 576039 . 2 747,485 0,893 -chrXI 574662 576039 HC_gene_5672_tx_6 1 - 574662 576039 . 2 567,760 0,618 -chrXI 574662 576039 HC_gene_5672_tx_7 1 - 574662 576039 . 2 699,144 0,1234 -chrXI 576210 576707 HC_gene_5673_tx_1 8 - 576210 576707 . 1 498 0 -chrXI 576210 577769 HC_gene_5673_tx_2 3 - 576210 577769 . 1 1560 0 -chrXI 576210 578122 HC_gene_5673_tx_3 1 - 576210 578122 . 2 1515,332 0,1581 -chrXI 576210 578122 HC_gene_5673_tx_4 2 - 576210 578122 . 1 1913 0 -chrXI 576210 578262 HC_gene_5673_tx_5 11 - 576210 578262 . 1 2053 0 -chrXI 576210 578262 HC_gene_5673_tx_6 1 - 576210 578262 . 2 1130,398 0,1655 -chrXI 576271 576489 HC_gene_5407_tx_1 3 + 576271 576489 . 1 219 0 -chrXI 576331 576707 HC_gene_5673_tx_14 21 - 576331 576707 . 1 377 0 -chrXI 576331 577769 HC_gene_5673_tx_7 10 - 576331 577769 . 1 1439 0 -chrXI 576331 578122 HC_gene_5673_tx_8 11 - 576331 578122 . 1 1792 0 -chrXI 576331 578122 HC_gene_5673_tx_9 1 - 576331 578122 . 2 829,893 0,899 -chrXI 576331 578262 HC_gene_5673_tx_10 30 - 576331 578262 . 1 1932 0 -chrXI 576331 578262 HC_gene_5673_tx_11 1 - 576331 578262 . 2 1098,276 0,1656 -chrXI 576331 578262 HC_gene_5673_tx_12 1 - 576331 578262 . 2 806,1013 0,919 -chrXI 576331 578262 HC_gene_5673_tx_13 1 - 576331 578262 . 2 829,1033 0,899 -chrXI 578474 578901 MC_gene_5408_tx_1 1 + 578474 578901 . 1 428 0 -chrXI 579000 579186 MC_gene_5409_tx_1 1 + 579000 579186 . 1 187 0 -chrXI 579216 579803 HC_gene_5410_tx_1 283 + 579216 579803 . 1 588 0 -chrXI 579284 579528 LC_gene_5674_tx_1 1 - 579284 579528 . 1 245 0 -chrXI 579665 580031 HC_gene_5675_tx_1 26 - 579665 580031 . 1 367 0 -chrXI 579665 580155 HC_gene_5675_tx_2 51 - 579665 580155 . 1 491 0 -chrXI 579665 580275 HC_gene_5675_tx_3 21 - 579665 580275 . 1 611 0 -chrXI 579665 580275 HC_gene_5675_tx_4 1 - 579665 580275 . 2 484,78 0,533 -chrXI 579665 580499 HC_gene_5675_tx_5 15 - 579665 580499 . 1 835 0 -chrXI 579665 580792 HC_gene_5675_tx_6 1 - 579665 580792 . 2 539,295 0,833 -chrXI 579665 580794 HC_gene_5675_tx_7 120 - 579665 580794 . 1 1130 0 -chrXI 579665 580794 HC_gene_5675_tx_8 1 - 579665 580794 . 2 517,505 0,625 -chrXI 579665 580794 HC_gene_5675_tx_9 1 - 579665 580794 . 2 87,986 0,144 -chrXI 580405 580833 HC_gene_5411_tx_1 10 + 580405 580833 . 1 429 0 -chrXI 580726 580794 HC_gene_5675_tx_10 2 - 580726 580794 . 1 69 0 -chrXI 580857 581732 MC_gene_5676_tx_1 1 - 580857 581732 . 1 876 0 -chrXI 581595 582099 HC_gene_5412_tx_1 1 + 581595 582099 . 1 505 0 -chrXI 581987 583450 HC_gene_5413_tx_1 1 + 581987 583450 . 1 1464 0 -chrXI 582038 583450 HC_gene_5413_tx_2 1 + 582038 583450 . 1 1413 0 -chrXI 582137 583450 HC_gene_5413_tx_3 2 + 582137 583450 . 1 1314 0 -chrXI 582266 583450 HC_gene_5413_tx_4 10 + 582266 583450 . 1 1185 0 -chrXI 583627 584820 HC_gene_5414_tx_1 37 + 583627 584820 . 1 1194 0 -chrXI 583886 584820 HC_gene_5414_tx_2 13 + 583886 584820 . 1 935 0 -chrXI 583903 584284 LC_gene_5677_tx_1 1 - 583903 584284 . 1 382 0 -chrXI 584942 586757 HC_gene_5415_tx_1 6 + 584942 586757 . 1 1816 0 -chrXI 584942 586757 HC_gene_5415_tx_2 1 + 584942 586757 . 2 861,470 0,1346 -chrXI 585735 586757 HC_gene_5415_tx_3 1 + 585735 586757 . 1 1023 0 -chrXI 585835 586620 MC_gene_5678_tx_1 1 - 585835 586620 . 1 786 0 -chrXI 586627 589399 HC_gene_5679_tx_1 1 - 586627 589399 . 1 2773 0 -chrXI 586627 589551 HC_gene_5679_tx_2 3 - 586627 589551 . 1 2925 0 -chrXI 586715 589551 HC_gene_5679_tx_3 1 - 586715 589551 . 1 2837 0 -chrXI 590331 591436 HC_gene_5416_tx_1 51 + 590331 591436 . 1 1106 0 -chrXI 590331 591508 HC_gene_5416_tx_2 119 + 590331 591508 . 1 1178 0 -chrXI 590515 591436 HC_gene_5416_tx_3 9 + 590515 591436 . 1 922 0 -chrXI 590515 591508 HC_gene_5416_tx_4 5 + 590515 591508 . 1 994 0 -chrXI 590588 591436 HC_gene_5416_tx_5 3 + 590588 591436 . 1 849 0 -chrXI 590588 591508 HC_gene_5416_tx_6 12 + 590588 591508 . 1 921 0 -chrXI 590760 591436 HC_gene_5416_tx_7 10 + 590760 591436 . 1 677 0 -chrXI 590760 591508 HC_gene_5416_tx_8 12 + 590760 591508 . 1 749 0 -chrXI 591091 591436 HC_gene_5416_tx_9 9 + 591091 591436 . 1 346 0 -chrXI 591091 591508 HC_gene_5416_tx_10 15 + 591091 591508 . 1 418 0 -chrXI 591413 591667 HC_gene_5680_tx_1 21 - 591413 591667 . 1 255 0 -chrXI 591413 591733 HC_gene_5680_tx_2 24 - 591413 591733 . 1 321 0 -chrXI 591413 591898 HC_gene_5680_tx_3 62 - 591413 591898 . 1 486 0 -chrXI 591413 592041 HC_gene_5680_tx_4 32 - 591413 592041 . 1 629 0 -chrXI 591413 592132 HC_gene_5680_tx_5 20 - 591413 592132 . 1 720 0 -chrXI 591413 592562 HC_gene_5680_tx_6 154 - 591413 592562 . 1 1150 0 -chrXI 592776 596345 HC_gene_5417_tx_1 9 + 592776 596345 . 1 3570 0 -chrXI 592776 596345 HC_gene_5417_tx_2 1 + 592776 596345 . 2 386,2488 0,1082 -chrXI 593661 596345 HC_gene_5417_tx_3 1 + 593661 596345 . 2 1258,491 0,2194 -chrXI 594486 596345 HC_gene_5417_tx_4 3 + 594486 596345 . 1 1860 0 -chrXI 594667 596345 HC_gene_5417_tx_5 1 + 594667 596345 . 1 1679 0 -chrXI 595878 596345 HC_gene_5417_tx_6 7 + 595878 596345 . 1 468 0 -chrXI 596272 596596 HC_gene_5681_tx_1 19 - 596272 596596 . 1 325 0 -chrXI 596272 596863 HC_gene_5681_tx_2 80 - 596272 596863 . 1 592 0 -chrXI 596629 596989 HC_gene_5418_tx_1 2 + 596629 596989 . 1 361 0 -chrXI 596969 598158 HC_gene_5682_tx_1 4 - 596969 598158 . 1 1190 0 -chrXI 596969 598608 HC_gene_5682_tx_2 2 - 596969 598608 . 1 1640 0 -chrXI 596969 598675 HC_gene_5682_tx_3 2 - 596969 598675 . 1 1707 0 -chrXI 596969 598926 HC_gene_5682_tx_4 23 - 596969 598926 . 1 1958 0 -chrXI 599001 599431 HC_gene_5683_tx_1 14 - 599001 599431 . 1 431 0 -chrXI 599001 599691 HC_gene_5683_tx_2 105 - 599001 599691 . 1 691 0 -chrXI 599832 601429 HC_gene_5419_tx_1 2 + 599832 601429 . 1 1598 0 -chrXI 599832 601543 HC_gene_5419_tx_2 1 + 599832 601543 . 1 1712 0 -chrXI 601926 603169 HC_gene_5420_tx_1 2 + 601926 603169 . 1 1244 0 -chrXI 601926 603293 HC_gene_5420_tx_2 5 + 601926 603293 . 1 1368 0 -chrXI 602795 603169 HC_gene_5420_tx_3 2 + 602795 603169 . 1 375 0 -chrXI 602795 603293 HC_gene_5420_tx_4 1 + 602795 603293 . 1 499 0 -chrXI 602795 603585 HC_gene_5420_tx_5 1 + 602795 603585 . 1 791 0 -chrXI 603094 603698 HC_gene_5684_tx_1 11 - 603094 603698 . 1 605 0 -chrXI 603094 604255 HC_gene_5684_tx_2 41 - 603094 604255 . 1 1162 0 -chrXI 604192 604445 MC_gene_5421_tx_1 1 + 604192 604445 . 1 254 0 -chrXI 604336 604899 HC_gene_5685_tx_1 11 - 604336 604899 . 1 564 0 -chrXI 604336 605412 HC_gene_5685_tx_3 1 - 604336 605412 . 1 1077 0 -chrXI 604336 605432 HC_gene_5685_tx_4 50 - 604336 605432 . 1 1097 0 -chrXI 604336 605432 HC_gene_5685_tx_5 1 - 604336 605432 . 2 863,147 0,950 -chrXI 604432 604899 HC_gene_5685_tx_2 2 - 604432 604899 . 1 468 0 -chrXI 604432 605432 HC_gene_5685_tx_6 5 - 604432 605432 . 1 1001 0 -chrXI 605512 606218 HC_gene_5686_tx_1 8 - 605512 606218 . 1 707 0 -chrXI 605512 606218 HC_gene_5686_tx_2 1 - 605512 606218 . 2 423,178 0,529 -chrXI 605512 606827 HC_gene_5686_tx_3 6 - 605512 606827 . 1 1316 0 -chrXI 605512 608181 HC_gene_5686_tx_4 3 - 605512 608181 . 1 2670 0 -chrXI 605512 608445 HC_gene_5686_tx_5 14 - 605512 608445 . 1 2934 0 -chrXI 605512 608445 HC_gene_5686_tx_6 1 - 605512 608445 . 2 1338,1494 0,1440 -chrXI 605512 608445 HC_gene_5686_tx_7 1 - 605512 608445 . 2 1303,1518 0,1416 -chrXI 605512 608445 HC_gene_5686_tx_8 1 - 605512 608445 . 2 2233,647 0,2287 -chrXI 606208 607304 MC_gene_5422_tx_1 1 + 606208 607304 . 1 1097 0 -chrXI 607613 608181 HC_gene_5686_tx_9 1 - 607613 608181 . 1 569 0 -chrXI 607613 608445 HC_gene_5686_tx_10 3 - 607613 608445 . 1 833 0 -chrXI 608778 611227 MC_gene_5687_tx_1 1 - 608778 611227 . 1 2450 0 -chrXI 608792 611264 HC_gene_5423_tx_1 7 + 608792 611264 . 1 2473 0 -chrXI 609025 611264 HC_gene_5423_tx_2 1 + 609025 611264 . 1 2240 0 -chrXI 609395 611264 HC_gene_5423_tx_3 4 + 609395 611264 . 1 1870 0 -chrXI 609683 610873 MC_gene_5687_tx_2 1 - 609683 610873 . 1 1191 0 -chrXI 609836 611264 HC_gene_5423_tx_4 5 + 609836 611264 . 1 1429 0 -chrXI 610748 611096 MC_gene_5687_tx_3 1 - 610748 611096 . 1 349 0 -chrXI 611322 612394 HC_gene_5424_tx_1 2 + 611322 612394 . 1 1073 0 -chrXI 611322 612530 HC_gene_5424_tx_2 1 + 611322 612530 . 1 1209 0 -chrXI 611492 612394 HC_gene_5424_tx_3 68 + 611492 612394 . 1 903 0 -chrXI 611492 612530 HC_gene_5424_tx_4 2 + 611492 612530 . 1 1039 0 -chrXI 611791 612394 HC_gene_5424_tx_5 11 + 611791 612394 . 1 604 0 -chrXI 611791 612530 HC_gene_5424_tx_6 1 + 611791 612530 . 1 740 0 -chrXI 611977 612394 HC_gene_5424_tx_7 8 + 611977 612394 . 1 418 0 -chrXI 612417 612841 HC_gene_5688_tx_1 72 - 612417 612841 . 1 425 0 -chrXI 612417 612897 HC_gene_5688_tx_2 36 - 612417 612897 . 1 481 0 -chrXI 612417 612897 HC_gene_5688_tx_3 1 - 612417 612897 . 2 343,87 0,394 -chrXI 612417 613002 HC_gene_5688_tx_4 43 - 612417 613002 . 1 586 0 -chrXI 612417 613900 HC_gene_5688_tx_7 1 - 612417 613900 . 2 498,910 0,574 -chrXI 612417 613914 HC_gene_5688_tx_8 77 - 612417 613914 . 1 1498 0 -chrXI 612417 613914 HC_gene_5688_tx_9 2 - 612417 613914 . 2 1061,72 0,1426 -chrXI 612417 613914 HC_gene_5688_tx_10 1 - 612417 613914 . 2 921,72 0,1426 -chrXI 612417 613914 HC_gene_5688_tx_11 1 - 612417 613914 . 2 1097,72 0,1426 -chrXI 612417 613914 HC_gene_5688_tx_12 1 - 612417 613914 . 2 1305,119 0,1379 -chrXI 612417 613914 HC_gene_5688_tx_13 1 - 612417 613914 . 2 598,804 0,694 -chrXI 612417 613914 HC_gene_5688_tx_14 1 - 612417 613914 . 2 1269,130 0,1368 -chrXI 612417 613914 HC_gene_5688_tx_15 1 - 612417 613914 . 2 1278,119 0,1379 -chrXI 612417 613914 HC_gene_5688_tx_16 1 - 612417 613914 . 2 1296,121 0,1377 -chrXI 612417 613914 HC_gene_5688_tx_17 1 - 612417 613914 . 2 1355,74 0,1424 -chrXI 612417 613914 HC_gene_5688_tx_18 1 - 612417 613914 . 2 1334,114 0,1384 -chrXI 612417 613914 HC_gene_5688_tx_19 1 - 612417 613914 . 2 1260,72 0,1426 -chrXI 612522 612841 HC_gene_5688_tx_24 10 - 612522 612841 . 1 320 0 -chrXI 612522 612897 HC_gene_5688_tx_25 6 - 612522 612897 . 1 376 0 -chrXI 612522 613002 HC_gene_5688_tx_5 1 - 612522 613002 . 2 389,39 0,442 -chrXI 612522 613002 HC_gene_5688_tx_6 8 - 612522 613002 . 1 481 0 -chrXI 612522 613914 HC_gene_5688_tx_20 17 - 612522 613914 . 1 1393 0 -chrXI 612522 613914 HC_gene_5688_tx_21 1 - 612522 613914 . 2 801,111 0,1282 -chrXI 612522 613914 HC_gene_5688_tx_22 1 - 612522 613914 . 2 536,757 0,636 -chrXI 612522 613914 HC_gene_5688_tx_23 1 - 612522 613914 . 2 1200,121 0,1272 -chrXI 614112 614714 LC_gene_5689_tx_1 1 - 614112 614714 . 1 603 0 -chrXI 614644 615569 MC_gene_5425_tx_1 1 + 614644 615569 . 1 926 0 -chrXI 615489 616001 LC_gene_5690_tx_1 1 - 615489 616001 . 1 513 0 -chrXI 615635 617565 HC_gene_5426_tx_1 1 + 615635 617565 . 1 1931 0 -chrXI 615635 617565 HC_gene_5426_tx_2 1 + 615635 617565 . 2 1224,627 0,1304 -chrXI 615635 617730 HC_gene_5426_tx_3 35 + 615635 617730 . 1 2096 0 -chrXI 615635 617730 HC_gene_5426_tx_4 1 + 615635 617730 . 2 1422,563 0,1533 -chrXI 615947 617565 HC_gene_5426_tx_5 1 + 615947 617565 . 1 1619 0 -chrXI 615947 617730 HC_gene_5426_tx_6 5 + 615947 617730 . 1 1784 0 -chrXI 617653 618281 HC_gene_5691_tx_1 20 - 617653 618281 . 1 629 0 -chrXI 617805 618281 HC_gene_5691_tx_2 3769 - 617805 618281 . 1 477 0 -chrXI 617805 618762 HC_gene_5691_tx_3 31 - 617805 618762 . 1 958 0 -chrXI 618883 619532 MC_gene_5427_tx_1 1 + 618883 619532 . 1 650 0 -chrXI 619648 621370 HC_gene_5428_tx_1 2 + 619648 621370 . 1 1723 0 -chrXI 621874 625622 HC_gene_5429_tx_1 1 + 621874 625622 . 1 3749 0 -chrXI 622460 625622 HC_gene_5429_tx_2 2 + 622460 625622 . 1 3163 0 -chrXI 623297 625464 HC_gene_5429_tx_3 1 + 623297 625464 . 1 2168 0 -chrXI 623297 625622 HC_gene_5429_tx_4 1 + 623297 625622 . 2 867,912 0,1414 -chrXI 623297 625622 HC_gene_5429_tx_5 1 + 623297 625622 . 1 2326 0 -chrXI 623393 625622 HC_gene_5429_tx_6 2 + 623393 625622 . 1 2230 0 -chrXI 623783 625622 HC_gene_5429_tx_7 2 + 623783 625622 . 1 1840 0 -chrXI 624075 625622 HC_gene_5429_tx_8 10 + 624075 625622 . 1 1548 0 -chrXI 624416 625622 HC_gene_5429_tx_9 18 + 624416 625622 . 1 1207 0 -chrXI 624692 625622 HC_gene_5429_tx_10 13 + 624692 625622 . 1 931 0 -chrXI 624978 625622 HC_gene_5429_tx_11 12 + 624978 625622 . 1 645 0 -chrXI 625040 625622 HC_gene_5429_tx_12 18 + 625040 625622 . 1 583 0 -chrXI 625110 625622 HC_gene_5429_tx_13 24 + 625110 625622 . 1 513 0 -chrXI 625242 625622 HC_gene_5429_tx_14 39 + 625242 625622 . 1 381 0 -chrXI 625853 626260 HC_gene_5430_tx_1 5 + 625853 626260 . 2 49,284 0,124 -chrXI 625853 626260 HC_gene_5430_tx_2 6 + 625853 626260 . 1 408 0 -chrXI 625853 626329 HC_gene_5430_tx_3 60 + 625853 626329 . 2 49,353 0,124 -chrXI 625853 626329 HC_gene_5430_tx_4 60 + 625853 626329 . 1 477 0 -chrXI 625853 626329 HC_gene_5430_tx_5 2 + 625853 626329 . 2 35,358 0,119 -chrXI 626186 626494 HC_gene_5692_tx_1 8 - 626186 626494 . 1 309 0 -chrXI 626550 630487 HC_gene_5431_tx_1 5 + 626550 630487 . 1 3938 0 -chrXI 626740 630487 HC_gene_5431_tx_2 1 + 626740 630487 . 1 3748 0 -chrXI 627348 630487 HC_gene_5431_tx_3 2 + 627348 630487 . 1 3140 0 -chrXI 629728 630038 LC_gene_5693_tx_1 1 - 629728 630038 . 1 311 0 -chrXI 630221 630487 HC_gene_5431_tx_4 2 + 630221 630487 . 1 267 0 -chrXI 630420 631986 MC_gene_5694_tx_1 1 - 630420 631986 . 1 1567 0 -chrXI 630794 631104 MC_gene_5432_tx_1 1 + 630794 631104 . 1 311 0 -chrXI 631175 633034 MC_gene_5433_tx_1 1 + 631175 633034 . 1 1860 0 -chrXI 632945 635317 HC_gene_5695_tx_1 12 - 632945 635317 . 1 2373 0 -chrXI 632945 635317 HC_gene_5695_tx_2 1 - 632945 635317 . 2 296,1468 0,905 -chrXI 635567 638400 MC_gene_5434_tx_1 1 + 635567 638400 . 1 2834 0 -chrXI 638450 639828 HC_gene_5696_tx_1 1 - 638450 639828 . 1 1379 0 -chrXI 638450 640320 HC_gene_5696_tx_4 12 - 638450 640320 . 1 1871 0 -chrXI 638722 639828 HC_gene_5696_tx_2 1 - 638722 639828 . 1 1107 0 -chrXI 638722 640320 HC_gene_5696_tx_5 13 - 638722 640320 . 1 1599 0 -chrXI 638831 639828 HC_gene_5696_tx_3 7 - 638831 639828 . 1 998 0 -chrXI 638831 640320 HC_gene_5696_tx_6 24 - 638831 640320 . 1 1490 0 -chrXI 638831 640320 HC_gene_5696_tx_7 1 - 638831 640320 . 2 1080,376 0,1114 -chrXI 640521 641217 HC_gene_5435_tx_1 2 + 640521 641217 . 1 697 0 -chrXI 640521 642182 HC_gene_5435_tx_2 5 + 640521 642182 . 1 1662 0 -chrXI 640521 642738 HC_gene_5435_tx_3 3 + 640521 642738 . 1 2218 0 -chrXI 642820 645152 LC_gene_5697_tx_1 1 - 642820 645152 . 1 2333 0 -chrXI 642953 650006 HC_gene_5436_tx_1 1 + 642953 650006 . 1 7054 0 -chrXI 649976 650331 HC_gene_5698_tx_1 55 - 649976 650331 . 1 356 0 -chrXI 650127 650331 HC_gene_5698_tx_2 4 - 650127 650331 . 1 205 0 -chrXI 650498 652245 HC_gene_5437_tx_1 2 + 650498 652245 . 1 1748 0 -chrXI 650498 652315 HC_gene_5437_tx_2 2 + 650498 652315 . 1 1818 0 -chrXI 650498 652623 HC_gene_5437_tx_3 4 + 650498 652623 . 1 2126 0 -chrXI 650498 653481 HC_gene_5437_tx_4 3 + 650498 653481 . 1 2984 0 -chrXI 650498 658074 HC_gene_5437_tx_5 1 + 650498 658074 . 1 7577 0 -chrXI 652481 654514 LC_gene_5699_tx_1 1 - 652481 654514 . 1 2034 0 -chrXI 657900 658363 MC_gene_5700_tx_1 1 - 657900 658363 . 1 464 0 -chrXI 658106 658556 MC_gene_5701_tx_1 1 - 658106 658556 . 1 451 0 -chrXI 658554 660585 LC_gene_5438_tx_1 1 + 658554 660585 . 1 2032 0 -chrXI 660782 661405 MC_gene_5439_tx_1 1 + 660782 661405 . 1 624 0 -chrXI 661256 662454 MC_gene_5702_tx_1 1 - 661256 662454 . 1 1199 0 -chrXI 661369 662426 MC_gene_5702_tx_2 1 - 661369 662426 . 1 1058 0 -chrXI 661640 662330 MC_gene_5702_tx_3 1 - 661640 662330 . 1 691 0 -chrXI 662650 665274 MC_gene_5440_tx_1 1 + 662650 665274 . 1 2625 0 -chrXI 663558 664137 MC_gene_5440_tx_2 1 + 663558 664137 . 1 580 0 -chrXII 443 10717 LC_gene_6093_tx_1 1 - 443 10717 . 2 329,4484 0,5791 -chrXII 13920 14349 LC_gene_5703_tx_1 1 + 13920 14349 . 1 430 0 -chrXII 14490 16031 HC_gene_6094_tx_1 4 - 14490 16031 . 1 1542 0 -chrXII 16218 16448 MC_gene_5704_tx_1 1 + 16218 16448 . 1 231 0 -chrXII 16514 17662 HC_gene_6095_tx_1 14 - 16514 17662 . 1 1149 0 -chrXII 17863 19844 LC_gene_6096_tx_1 1 - 17863 19844 . 1 1982 0 -chrXII 17948 19762 HC_gene_5705_tx_1 4 + 17948 19762 . 1 1815 0 -chrXII 17948 19906 HC_gene_5705_tx_2 6 + 17948 19906 . 1 1959 0 -chrXII 20169 20857 MC_gene_6097_tx_1 1 - 20169 20857 . 1 689 0 -chrXII 20906 21804 HC_gene_6098_tx_1 19 - 20906 21804 . 1 899 0 -chrXII 20906 22685 HC_gene_6098_tx_2 6 - 20906 22685 . 1 1780 0 -chrXII 22774 23197 MC_gene_6099_tx_1 1 - 22774 23197 . 1 424 0 -chrXII 22928 23320 LC_gene_5706_tx_1 1 + 22928 23320 . 1 393 0 -chrXII 23524 25381 HC_gene_5707_tx_1 10 + 23524 25381 . 1 1858 0 -chrXII 23739 25381 HC_gene_5707_tx_2 1 + 23739 25381 . 1 1643 0 -chrXII 25564 26063 HC_gene_6100_tx_1 3 - 25564 26063 . 1 500 0 -chrXII 26241 27215 HC_gene_5708_tx_1 8 + 26241 27215 . 1 975 0 -chrXII 26606 27215 HC_gene_5708_tx_2 3 + 26606 27215 . 1 610 0 -chrXII 27287 28872 HC_gene_6101_tx_1 4 - 27287 28872 . 1 1586 0 -chrXII 27287 29247 HC_gene_6101_tx_2 2 - 27287 29247 . 1 1961 0 -chrXII 29094 31788 HC_gene_5709_tx_1 1 + 29094 31788 . 1 2695 0 -chrXII 29608 31788 HC_gene_5709_tx_2 1 + 29608 31788 . 1 2181 0 -chrXII 29608 31940 HC_gene_5709_tx_3 1 + 29608 31940 . 1 2333 0 -chrXII 29804 31788 HC_gene_5709_tx_4 7 + 29804 31788 . 1 1985 0 -chrXII 29804 31788 HC_gene_5709_tx_5 1 + 29804 31788 . 2 852,1076 0,909 -chrXII 29804 31940 HC_gene_5709_tx_6 1 + 29804 31940 . 1 2137 0 -chrXII 32310 35233 HC_gene_6102_tx_1 1 - 32310 35233 . 1 2924 0 -chrXII 35403 36384 HC_gene_6103_tx_1 3 - 35403 36384 . 1 982 0 -chrXII 37150 38195 HC_gene_6104_tx_1 7 - 37150 38195 . 1 1046 0 -chrXII 37150 39494 HC_gene_6104_tx_2 20 - 37150 39494 . 1 2345 0 -chrXII 37150 39494 HC_gene_6104_tx_3 1 - 37150 39494 . 2 1139,185 0,2160 -chrXII 38648 39494 HC_gene_6104_tx_4 1 - 38648 39494 . 1 847 0 -chrXII 39085 39761 LC_gene_5710_tx_1 1 + 39085 39761 . 1 677 0 -chrXII 39678 40440 HC_gene_6105_tx_1 11 - 39678 40440 . 2 544,40 0,723 -chrXII 39678 40440 HC_gene_6105_tx_2 78 - 39678 40440 . 1 763 0 -chrXII 40664 40986 HC_gene_5711_tx_1 1 + 40664 40986 . 1 323 0 -chrXII 40664 41292 HC_gene_5711_tx_2 67 + 40664 41292 . 1 629 0 -chrXII 40807 41292 HC_gene_5711_tx_3 5 + 40807 41292 . 1 486 0 -chrXII 40807 41292 HC_gene_5711_tx_4 1 + 40807 41292 . 2 381,44 0,442 -chrXII 40860 41923 HC_gene_6106_tx_1 2 - 40860 41923 . 1 1064 0 -chrXII 40860 42421 HC_gene_6106_tx_2 1 - 40860 42421 . 1 1562 0 -chrXII 41155 41726 HC_gene_6106_tx_8 14 - 41155 41726 . 1 572 0 -chrXII 41155 41923 HC_gene_6106_tx_9 4 - 41155 41923 . 1 769 0 -chrXII 41155 42421 HC_gene_6106_tx_3 3 - 41155 42421 . 1 1267 0 -chrXII 41155 42421 HC_gene_6106_tx_4 1 - 41155 42421 . 2 254,951 0,316 -chrXII 41155 42719 HC_gene_6106_tx_5 7 - 41155 42719 . 1 1565 0 -chrXII 41155 43022 HC_gene_6106_tx_6 3 - 41155 43022 . 1 1868 0 -chrXII 41155 43022 HC_gene_6106_tx_7 1 - 41155 43022 . 2 591,1182 0,686 -chrXII 43067 43771 HC_gene_6107_tx_1 1 - 43067 43771 . 1 705 0 -chrXII 45504 46434 HC_gene_6108_tx_1 1 - 45504 46434 . 1 931 0 -chrXII 45625 46434 HC_gene_6108_tx_2 2 - 45625 46434 . 1 810 0 -chrXII 45756 46284 HC_gene_6108_tx_4 2 - 45756 46284 . 1 529 0 -chrXII 45756 46434 HC_gene_6108_tx_3 11 - 45756 46434 . 1 679 0 -chrXII 46479 47078 MC_gene_6109_tx_1 1 - 46479 47078 . 1 600 0 -chrXII 46815 47459 LC_gene_5712_tx_1 1 + 46815 47459 . 1 645 0 -chrXII 47780 48188 HC_gene_6110_tx_1 1420 - 47780 48188 . 1 409 0 -chrXII 47780 48653 HC_gene_6110_tx_2 2758 - 47780 48653 . 1 874 0 -chrXII 47780 48706 HC_gene_6110_tx_3 19 - 47780 48706 . 1 927 0 -chrXII 49330 49594 MC_gene_6111_tx_1 1 - 49330 49594 . 1 265 0 -chrXII 49909 52085 HC_gene_5713_tx_1 26 + 49909 52085 . 1 2177 0 -chrXII 49909 52085 HC_gene_5713_tx_2 1 + 49909 52085 . 2 250,1783 0,394 -chrXII 51508 52085 HC_gene_5713_tx_3 14 + 51508 52085 . 1 578 0 -chrXII 51508 52435 HC_gene_5713_tx_6 1 + 51508 52435 . 1 928 0 -chrXII 51594 52085 HC_gene_5713_tx_4 10 + 51594 52085 . 1 492 0 -chrXII 51687 52085 HC_gene_5713_tx_5 10 + 51687 52085 . 1 399 0 -chrXII 51813 52085 HC_gene_5713_tx_7 15 + 51813 52085 . 1 273 0 -chrXII 51984 52639 HC_gene_6112_tx_1 29 - 51984 52639 . 1 656 0 -chrXII 52360 52639 HC_gene_6112_tx_2 6 - 52360 52639 . 1 280 0 -chrXII 52523 52768 MC_gene_5714_tx_1 1 + 52523 52768 . 1 246 0 -chrXII 52739 53976 HC_gene_6113_tx_1 2 - 52739 53976 . 1 1238 0 -chrXII 52748 53976 HC_gene_6113_tx_2 1 - 52748 53976 . 1 1229 0 -chrXII 52757 53186 HC_gene_6113_tx_10 4 - 52757 53186 . 1 430 0 -chrXII 52757 53631 HC_gene_6113_tx_15 1 - 52757 53631 . 1 875 0 -chrXII 52757 53976 HC_gene_6113_tx_3 12 - 52757 53976 . 1 1220 0 -chrXII 52762 53186 HC_gene_6113_tx_11 3 - 52762 53186 . 1 425 0 -chrXII 52762 53631 HC_gene_6113_tx_16 3 - 52762 53631 . 1 870 0 -chrXII 52762 53976 HC_gene_6113_tx_4 6 - 52762 53976 . 1 1215 0 -chrXII 52765 53976 HC_gene_6113_tx_5 4 - 52765 53976 . 1 1212 0 -chrXII 52766 53186 HC_gene_6113_tx_12 1 - 52766 53186 . 1 421 0 -chrXII 52766 53976 HC_gene_6113_tx_6 2 - 52766 53976 . 1 1211 0 -chrXII 52767 53186 HC_gene_6113_tx_13 1 - 52767 53186 . 1 420 0 -chrXII 52767 53976 HC_gene_6113_tx_7 1 - 52767 53976 . 1 1210 0 -chrXII 52768 53976 HC_gene_6113_tx_8 1 - 52768 53976 . 1 1209 0 -chrXII 52770 53186 HC_gene_6113_tx_14 1 - 52770 53186 . 1 417 0 -chrXII 52853 53976 HC_gene_6113_tx_9 12 - 52853 53976 . 1 1124 0 -chrXII 54145 54651 HC_gene_6114_tx_1 4 - 54145 54651 . 1 507 0 -chrXII 54145 54939 HC_gene_6114_tx_2 8 - 54145 54939 . 1 795 0 -chrXII 61878 62115 HC_gene_6115_tx_1 1 - 61878 62115 . 1 238 0 -chrXII 61878 62347 HC_gene_6115_tx_2 1 - 61878 62347 . 1 470 0 -chrXII 61878 63750 HC_gene_6115_tx_3 1 - 61878 63750 . 1 1873 0 -chrXII 63938 64269 HC_gene_6116_tx_1 13 - 63938 64269 . 1 332 0 -chrXII 63938 64420 HC_gene_6116_tx_2 12 - 63938 64420 . 1 483 0 -chrXII 63938 64526 HC_gene_6116_tx_3 36 - 63938 64526 . 1 589 0 -chrXII 63938 64725 HC_gene_6116_tx_5 7 - 63938 64725 . 1 788 0 -chrXII 63938 64982 HC_gene_6116_tx_7 22 - 63938 64982 . 1 1045 0 -chrXII 63938 64982 HC_gene_6116_tx_8 1 - 63938 64982 . 2 181,400 0,645 -chrXII 63938 64982 HC_gene_6116_tx_9 1 - 63938 64982 . 2 36,946 0,99 -chrXII 63938 64982 HC_gene_6116_tx_10 1 - 63938 64982 . 2 566,396 0,649 -chrXII 63938 65305 HC_gene_6116_tx_13 53 - 63938 65305 . 1 1368 0 -chrXII 63938 65305 HC_gene_6116_tx_14 1 - 63938 65305 . 2 558,711 0,657 -chrXII 63938 66556 HC_gene_6116_tx_16 9 - 63938 66556 . 1 2619 0 -chrXII 63938 66556 HC_gene_6116_tx_17 1 - 63938 66556 . 2 1123,1382 0,1237 -chrXII 63947 64336 MC_gene_5715_tx_1 1 + 63947 64336 . 1 390 0 -chrXII 64005 64269 HC_gene_6116_tx_19 4 - 64005 64269 . 1 265 0 -chrXII 64005 64526 HC_gene_6116_tx_4 12 - 64005 64526 . 1 522 0 -chrXII 64005 64725 HC_gene_6116_tx_6 4 - 64005 64725 . 1 721 0 -chrXII 64005 64982 HC_gene_6116_tx_11 13 - 64005 64982 . 1 978 0 -chrXII 64005 64982 HC_gene_6116_tx_12 1 - 64005 64982 . 2 269,295 0,683 -chrXII 64005 65305 HC_gene_6116_tx_15 49 - 64005 65305 . 1 1301 0 -chrXII 64005 66556 HC_gene_6116_tx_18 2 - 64005 66556 . 1 2552 0 -chrXII 65241 66556 HC_gene_6116_tx_20 1 - 65241 66556 . 1 1316 0 -chrXII 65832 66778 MC_gene_5716_tx_1 1 + 65832 66778 . 1 947 0 -chrXII 66659 67501 HC_gene_6117_tx_1 14 - 66659 67501 . 1 843 0 -chrXII 66659 67501 HC_gene_6117_tx_2 1 - 66659 67501 . 2 539,221 0,622 -chrXII 66659 67758 HC_gene_6117_tx_3 2 - 66659 67758 . 1 1100 0 -chrXII 66659 68268 HC_gene_6117_tx_4 27 - 66659 68268 . 1 1610 0 -chrXII 66737 67470 MC_gene_5717_tx_1 1 + 66737 67470 . 1 734 0 -chrXII 68418 70618 HC_gene_5718_tx_1 11 + 68418 70618 . 1 2201 0 -chrXII 70482 70899 HC_gene_6118_tx_1 8 - 70482 70899 . 1 418 0 -chrXII 70482 71141 HC_gene_6118_tx_2 8 - 70482 71141 . 1 660 0 -chrXII 70482 73185 HC_gene_6118_tx_3 24 - 70482 73185 . 1 2704 0 -chrXII 70482 73185 HC_gene_6118_tx_4 1 - 70482 73185 . 2 1670,939 0,1765 -chrXII 70482 73185 HC_gene_6118_tx_5 1 - 70482 73185 . 2 1159,1479 0,1225 -chrXII 70482 73185 HC_gene_6118_tx_6 1 - 70482 73185 . 2 669,1282 0,1422 -chrXII 70482 73185 HC_gene_6118_tx_7 1 - 70482 73185 . 2 1134,1479 0,1225 -chrXII 73398 74247 HC_gene_5719_tx_1 1 + 73398 74247 . 1 850 0 -chrXII 73398 74251 HC_gene_5719_tx_2 1 + 73398 74251 . 1 854 0 -chrXII 73398 74667 HC_gene_5719_tx_3 10 + 73398 74667 . 1 1270 0 -chrXII 73398 74994 HC_gene_5719_tx_4 1 + 73398 74994 . 1 1597 0 -chrXII 73903 76475 HC_gene_6119_tx_1 3 - 73903 76475 . 1 2573 0 -chrXII 73903 76828 HC_gene_6119_tx_2 6 - 73903 76828 . 1 2926 0 -chrXII 74114 76475 HC_gene_6119_tx_3 1 - 74114 76475 . 1 2362 0 -chrXII 77010 79165 HC_gene_6120_tx_1 2 - 77010 79165 . 1 2156 0 -chrXII 77010 80262 HC_gene_6120_tx_2 12 - 77010 80262 . 1 3253 0 -chrXII 77010 80262 HC_gene_6120_tx_3 1 - 77010 80262 . 2 1567,168 0,3085 -chrXII 77010 80262 HC_gene_6120_tx_4 1 - 77010 80262 . 2 859,2292 0,961 -chrXII 81358 83826 HC_gene_5720_tx_1 27 + 81358 83826 . 1 2469 0 -chrXII 81358 83826 HC_gene_5720_tx_2 1 + 81358 83826 . 2 1859,514 0,1955 -chrXII 81411 82061 LC_gene_6121_tx_1 1 - 81411 82061 . 1 651 0 -chrXII 81659 83826 HC_gene_5720_tx_3 1 + 81659 83826 . 1 2168 0 -chrXII 81923 83826 HC_gene_5720_tx_4 3 + 81923 83826 . 1 1904 0 -chrXII 82261 83826 HC_gene_5720_tx_5 4 + 82261 83826 . 1 1566 0 -chrXII 83165 83620 MC_gene_6122_tx_1 1 - 83165 83620 . 1 456 0 -chrXII 83646 84078 MC_gene_6123_tx_1 1 - 83646 84078 . 1 433 0 -chrXII 84669 86958 HC_gene_5721_tx_1 83 + 84669 86958 . 1 2290 0 -chrXII 84669 86958 HC_gene_5721_tx_2 1 + 84669 86958 . 2 465,1269 0,1021 -chrXII 84669 86958 HC_gene_5721_tx_3 1 + 84669 86958 . 2 1186,985 0,1305 -chrXII 84669 86958 HC_gene_5721_tx_4 1 + 84669 86958 . 2 694,1456 0,834 -chrXII 84669 86958 HC_gene_5721_tx_5 1 + 84669 86958 . 2 844,1358 0,932 -chrXII 84669 86958 HC_gene_5721_tx_6 1 + 84669 86958 . 2 900,1349 0,941 -chrXII 84669 86958 HC_gene_5721_tx_7 1 + 84669 86958 . 2 388,1813 0,477 -chrXII 84669 86958 HC_gene_5721_tx_8 1 + 84669 86958 . 2 2010,216 0,2074 -chrXII 84674 86174 LC_gene_6124_tx_1 1 - 84674 86174 . 1 1501 0 -chrXII 84781 86958 HC_gene_5721_tx_9 3 + 84781 86958 . 1 2178 0 -chrXII 86138 86958 HC_gene_5721_tx_10 13 + 86138 86958 . 1 821 0 -chrXII 86457 86958 HC_gene_5721_tx_11 21 + 86457 86958 . 1 502 0 -chrXII 86634 86958 HC_gene_5721_tx_12 24 + 86634 86958 . 1 325 0 -chrXII 87197 88262 HC_gene_5722_tx_1 150 + 87197 88262 . 1 1066 0 -chrXII 88151 88380 HC_gene_6125_tx_1 2 - 88151 88380 . 1 230 0 -chrXII 88566 91436 HC_gene_5723_tx_1 40 + 88566 91436 . 1 2871 0 -chrXII 88566 91436 HC_gene_5723_tx_2 1 + 88566 91436 . 2 1645,1076 0,1795 -chrXII 88566 91436 HC_gene_5723_tx_3 1 + 88566 91436 . 2 1939,819 0,2052 -chrXII 88566 91436 HC_gene_5723_tx_4 1 + 88566 91436 . 2 1987,799 0,2072 -chrXII 88796 91436 HC_gene_5723_tx_5 7 + 88796 91436 . 1 2641 0 -chrXII 88796 91436 HC_gene_5723_tx_6 1 + 88796 91436 . 2 1466,1097 0,1544 -chrXII 88796 91436 HC_gene_5723_tx_7 1 + 88796 91436 . 2 900,1697 0,944 -chrXII 88900 91436 HC_gene_5723_tx_8 11 + 88900 91436 . 1 2537 0 -chrXII 89037 91436 HC_gene_5723_tx_9 1 + 89037 91436 . 2 526,1816 0,584 -chrXII 89037 91436 HC_gene_5723_tx_10 1 + 89037 91436 . 2 97,2054 0,346 -chrXII 89037 91436 HC_gene_5723_tx_11 8 + 89037 91436 . 1 2400 0 -chrXII 89037 91436 HC_gene_5723_tx_12 1 + 89037 91436 . 2 1351,995 0,1405 -chrXII 89343 91436 HC_gene_5723_tx_13 13 + 89343 91436 . 1 2094 0 -chrXII 89343 91436 HC_gene_5723_tx_14 1 + 89343 91436 . 2 1109,923 0,1171 -chrXII 89610 91436 HC_gene_5723_tx_15 16 + 89610 91436 . 1 1827 0 -chrXII 89610 91436 HC_gene_5723_tx_16 1 + 89610 91436 . 2 874,799 0,1028 -chrXII 89610 91436 HC_gene_5723_tx_17 1 + 89610 91436 . 2 970,795 0,1032 -chrXII 89733 91436 HC_gene_5723_tx_18 43 + 89733 91436 . 1 1704 0 -chrXII 89733 91436 HC_gene_5723_tx_19 1 + 89733 91436 . 2 735,895 0,809 -chrXII 89733 91436 HC_gene_5723_tx_20 1 + 89733 91436 . 2 847,799 0,905 -chrXII 89733 91436 HC_gene_5723_tx_21 1 + 89733 91436 . 2 126,1021 0,683 -chrXII 89733 91436 HC_gene_5723_tx_22 1 + 89733 91436 . 2 664,805 0,899 -chrXII 89733 91436 HC_gene_5723_tx_23 1 + 89733 91436 . 2 1298,332 0,1372 -chrXII 90421 91436 HC_gene_5723_tx_24 21 + 90421 91436 . 1 1016 0 -chrXII 90627 91436 HC_gene_5723_tx_25 45 + 90627 91436 . 1 810 0 -chrXII 90738 91436 HC_gene_5723_tx_26 42 + 90738 91436 . 1 699 0 -chrXII 90738 91436 HC_gene_5723_tx_27 1 + 90738 91436 . 2 458,197 0,502 -chrXII 90813 91436 HC_gene_5723_tx_28 6 + 90813 91436 . 1 624 0 -chrXII 90882 91436 HC_gene_5723_tx_29 47 + 90882 91436 . 1 555 0 -chrXII 90990 91436 HC_gene_5723_tx_30 17 + 90990 91436 . 1 447 0 -chrXII 91050 91436 HC_gene_5723_tx_31 83 + 91050 91436 . 1 387 0 -chrXII 91589 92211 MC_gene_5724_tx_1 1 + 91589 92211 . 1 623 0 -chrXII 91617 92304 LC_gene_6126_tx_1 1 - 91617 92304 . 1 688 0 -chrXII 92783 94662 HC_gene_5725_tx_1 1 + 92783 94662 . 1 1880 0 -chrXII 92783 95335 HC_gene_5725_tx_3 1 + 92783 95335 . 1 2553 0 -chrXII 92893 94662 HC_gene_5725_tx_2 2 + 92893 94662 . 1 1770 0 -chrXII 93399 94662 HC_gene_5725_tx_4 4 + 93399 94662 . 1 1264 0 -chrXII 93399 95335 HC_gene_5725_tx_5 1 + 93399 95335 . 1 1937 0 -chrXII 94253 94662 HC_gene_5725_tx_6 5 + 94253 94662 . 1 410 0 -chrXII 94602 95110 MC_gene_6127_tx_1 1 - 94602 95110 . 1 509 0 -chrXII 94714 95335 HC_gene_5725_tx_7 7 + 94714 95335 . 1 622 0 -chrXII 95368 95778 HC_gene_6128_tx_1 1 - 95368 95778 . 1 411 0 -chrXII 95368 96525 HC_gene_6128_tx_13 1 - 95368 96525 . 1 1158 0 -chrXII 95368 96741 HC_gene_6128_tx_14 1 - 95368 96741 . 1 1374 0 -chrXII 95376 97141 HC_gene_6128_tx_24 1 - 95376 97141 . 1 1766 0 -chrXII 95381 95778 HC_gene_6128_tx_2 1 - 95381 95778 . 1 398 0 -chrXII 95381 97516 HC_gene_6128_tx_25 1 - 95381 97516 . 2 42,1967 0,169 -chrXII 95383 97516 HC_gene_6128_tx_26 1 - 95383 97516 . 1 2134 0 -chrXII 95387 97516 HC_gene_6128_tx_27 1 - 95387 97516 . 2 629,1450 0,680 -chrXII 95387 97516 HC_gene_6128_tx_28 1 - 95387 97516 . 1 2130 0 -chrXII 95390 95778 HC_gene_6128_tx_3 2 - 95390 95778 . 1 389 0 -chrXII 95390 96290 HC_gene_6128_tx_53 1 - 95390 96290 . 1 901 0 -chrXII 95390 97516 HC_gene_6128_tx_29 2 - 95390 97516 . 1 2127 0 -chrXII 95391 95778 HC_gene_6128_tx_4 1 - 95391 95778 . 1 388 0 -chrXII 95391 97516 HC_gene_6128_tx_30 4 - 95391 97516 . 1 2126 0 -chrXII 95392 96741 HC_gene_6128_tx_15 1 - 95392 96741 . 1 1350 0 -chrXII 95392 97516 HC_gene_6128_tx_31 1 - 95392 97516 . 1 2125 0 -chrXII 95395 95778 HC_gene_6128_tx_5 1 - 95395 95778 . 1 384 0 -chrXII 95395 97516 HC_gene_6128_tx_32 2 - 95395 97516 . 1 2122 0 -chrXII 95399 96525 HC_gene_6128_tx_16 1 - 95399 96525 . 1 1127 0 -chrXII 95399 97516 HC_gene_6128_tx_33 1 - 95399 97516 . 1 2118 0 -chrXII 95402 95778 HC_gene_6128_tx_6 1 - 95402 95778 . 1 377 0 -chrXII 95402 97141 HC_gene_6128_tx_34 1 - 95402 97141 . 1 1740 0 -chrXII 95403 96525 HC_gene_6128_tx_17 1 - 95403 96525 . 1 1123 0 -chrXII 95403 97141 HC_gene_6128_tx_35 1 - 95403 97141 . 1 1739 0 -chrXII 95403 97516 HC_gene_6128_tx_36 1 - 95403 97516 . 1 2114 0 -chrXII 95405 95778 HC_gene_6128_tx_7 1 - 95405 95778 . 1 374 0 -chrXII 95405 97516 HC_gene_6128_tx_37 1 - 95405 97516 . 1 2112 0 -chrXII 95406 95778 HC_gene_6128_tx_8 1 - 95406 95778 . 1 373 0 -chrXII 95406 96290 HC_gene_6128_tx_54 1 - 95406 96290 . 1 885 0 -chrXII 95406 97141 HC_gene_6128_tx_38 1 - 95406 97141 . 1 1736 0 -chrXII 95406 97516 HC_gene_6128_tx_39 2 - 95406 97516 . 1 2111 0 -chrXII 95407 95778 HC_gene_6128_tx_9 3 - 95407 95778 . 1 372 0 -chrXII 95407 96290 HC_gene_6128_tx_55 2 - 95407 96290 . 1 884 0 -chrXII 95407 96525 HC_gene_6128_tx_18 1 - 95407 96525 . 1 1119 0 -chrXII 95407 97141 HC_gene_6128_tx_40 1 - 95407 97141 . 1 1735 0 -chrXII 95407 97516 HC_gene_6128_tx_41 4 - 95407 97516 . 1 2110 0 -chrXII 95407 97516 HC_gene_6128_tx_42 1 - 95407 97516 . 2 562,1430 0,680 -chrXII 95408 95778 HC_gene_6128_tx_10 19 - 95408 95778 . 1 371 0 -chrXII 95408 96290 HC_gene_6128_tx_56 7 - 95408 96290 . 1 883 0 -chrXII 95408 96525 HC_gene_6128_tx_19 2 - 95408 96525 . 1 1118 0 -chrXII 95408 96741 HC_gene_6128_tx_20 2 - 95408 96741 . 1 1334 0 -chrXII 95408 97141 HC_gene_6128_tx_43 3 - 95408 97141 . 1 1734 0 -chrXII 95408 97516 HC_gene_6128_tx_44 20 - 95408 97516 . 1 2109 0 -chrXII 95408 97516 HC_gene_6128_tx_45 1 - 95408 97516 . 2 521,449 0,1660 -chrXII 95409 97516 HC_gene_6128_tx_46 1 - 95409 97516 . 1 2108 0 -chrXII 95410 97141 HC_gene_6128_tx_47 1 - 95410 97141 . 1 1732 0 -chrXII 95411 96290 HC_gene_6128_tx_57 1 - 95411 96290 . 1 880 0 -chrXII 95411 96525 HC_gene_6128_tx_21 1 - 95411 96525 . 1 1115 0 -chrXII 95412 95778 HC_gene_6128_tx_11 5 - 95412 95778 . 1 367 0 -chrXII 95412 96290 HC_gene_6128_tx_58 5 - 95412 96290 . 1 879 0 -chrXII 95412 97141 HC_gene_6128_tx_48 3 - 95412 97141 . 1 1730 0 -chrXII 95412 97516 HC_gene_6128_tx_49 12 - 95412 97516 . 1 2105 0 -chrXII 95412 97516 HC_gene_6128_tx_50 1 - 95412 97516 . 2 869,1175 0,930 -chrXII 95413 95778 HC_gene_6128_tx_12 11 - 95413 95778 . 1 366 0 -chrXII 95413 96290 HC_gene_6128_tx_59 2 - 95413 96290 . 1 878 0 -chrXII 95413 96525 HC_gene_6128_tx_22 1 - 95413 96525 . 1 1113 0 -chrXII 95413 96741 HC_gene_6128_tx_23 2 - 95413 96741 . 1 1329 0 -chrXII 95413 97141 HC_gene_6128_tx_51 2 - 95413 97141 . 1 1729 0 -chrXII 95413 97516 HC_gene_6128_tx_52 20 - 95413 97516 . 1 2104 0 -chrXII 97836 98990 MC_gene_5726_tx_1 1 + 97836 98990 . 1 1155 0 -chrXII 97931 98344 HC_gene_6129_tx_1 24 - 97931 98344 . 1 414 0 -chrXII 97931 98474 HC_gene_6129_tx_2 21 - 97931 98474 . 1 544 0 -chrXII 97931 98867 HC_gene_6129_tx_3 152 - 97931 98867 . 1 937 0 -chrXII 97970 98847 MC_gene_5726_tx_2 1 + 97970 98847 . 1 878 0 -chrXII 98919 100194 HC_gene_6130_tx_1 3 - 98919 100194 . 1 1276 0 -chrXII 98985 99416 HC_gene_6130_tx_5 5 - 98985 99416 . 1 432 0 -chrXII 98985 100036 HC_gene_6130_tx_2 4 - 98985 100036 . 1 1052 0 -chrXII 98985 100194 HC_gene_6130_tx_3 37 - 98985 100194 . 1 1210 0 -chrXII 98985 100194 HC_gene_6130_tx_4 1 - 98985 100194 . 2 485,671 0,539 -chrXII 99608 100472 MC_gene_5727_tx_1 1 + 99608 100472 . 1 865 0 -chrXII 100794 105364 MC_gene_5728_tx_1 1 + 100794 105364 . 2 3417,1101 0,3470 -chrXII 102644 105509 MC_gene_5729_tx_1 1 + 102644 105509 . 1 2866 0 -chrXII 104359 105500 MC_gene_5729_tx_2 1 + 104359 105500 . 1 1142 0 -chrXII 104667 105520 MC_gene_5729_tx_3 1 + 104667 105520 . 1 854 0 -chrXII 105010 105515 MC_gene_5729_tx_4 1 + 105010 105515 . 1 506 0 -chrXII 105119 105498 MC_gene_5729_tx_5 1 + 105119 105498 . 1 380 0 -chrXII 105538 106279 HC_gene_6131_tx_1 10 - 105538 106279 . 1 742 0 -chrXII 105538 107199 HC_gene_6131_tx_2 6 - 105538 107199 . 1 1662 0 -chrXII 105538 107416 HC_gene_6131_tx_3 3 - 105538 107416 . 1 1879 0 -chrXII 105683 108246 LC_gene_5730_tx_1 1 + 105683 108246 . 1 2564 0 -chrXII 108073 108149 HC_gene_6132_tx_1 1 - 108073 108149 . 1 77 0 -chrXII 108073 108354 HC_gene_6132_tx_2 11 - 108073 108354 . 1 282 0 -chrXII 108073 108469 HC_gene_6132_tx_3 1 - 108073 108469 . 1 397 0 -chrXII 108073 109027 HC_gene_6132_tx_4 39 - 108073 109027 . 1 955 0 -chrXII 108191 109027 HC_gene_6132_tx_5 13 - 108191 109027 . 1 837 0 -chrXII 109255 109668 LC_gene_5731_tx_1 1 + 109255 109668 . 1 414 0 -chrXII 109756 110149 HC_gene_6133_tx_1 87 - 109756 110149 . 1 394 0 -chrXII 109756 110567 HC_gene_6133_tx_2 72 - 109756 110567 . 1 812 0 -chrXII 109756 111239 HC_gene_6133_tx_3 50 - 109756 111239 . 1 1484 0 -chrXII 109756 111350 HC_gene_6133_tx_4 5 - 109756 111350 . 1 1595 0 -chrXII 109756 111432 HC_gene_6133_tx_5 24 - 109756 111432 . 1 1677 0 -chrXII 109756 111432 HC_gene_6133_tx_6 1 - 109756 111432 . 2 452,1031 0,646 -chrXII 109756 111605 HC_gene_6133_tx_7 299 - 109756 111605 . 1 1850 0 -chrXII 109756 111605 HC_gene_6133_tx_8 1 - 109756 111605 . 2 747,960 0,890 -chrXII 109756 111605 HC_gene_6133_tx_9 1 - 109756 111605 . 2 740,1027 0,823 -chrXII 109756 111605 HC_gene_6133_tx_10 1 - 109756 111605 . 2 823,960 0,890 -chrXII 109756 111605 HC_gene_6133_tx_11 1 - 109756 111605 . 2 750,968 0,882 -chrXII 109756 111605 HC_gene_6133_tx_12 1 - 109756 111605 . 2 925,859 0,991 -chrXII 109756 111605 HC_gene_6133_tx_13 1 - 109756 111605 . 2 828,921 0,929 -chrXII 109756 111605 HC_gene_6133_tx_14 1 - 109756 111605 . 2 29,1762 0,88 -chrXII 109756 111605 HC_gene_6133_tx_15 1 - 109756 111605 . 2 1478,196 0,1654 -chrXII 109756 111605 HC_gene_6133_tx_16 1 - 109756 111605 . 2 764,994 0,856 -chrXII 109756 111605 HC_gene_6133_tx_17 1 - 109756 111605 . 2 750,1025 0,825 -chrXII 109756 111605 HC_gene_6133_tx_18 1 - 109756 111605 . 2 764,1023 0,827 -chrXII 109756 111605 HC_gene_6133_tx_19 1 - 109756 111605 . 2 913,877 0,973 -chrXII 109756 111605 HC_gene_6133_tx_20 1 - 109756 111605 . 2 1216,552 0,1298 -chrXII 109756 111605 HC_gene_6133_tx_21 1 - 109756 111605 . 2 1196,594 0,1256 -chrXII 109756 111605 HC_gene_6133_tx_22 1 - 109756 111605 . 2 772,1022 0,828 -chrXII 109756 111605 HC_gene_6133_tx_23 1 - 109756 111605 . 2 831,415 0,1435 -chrXII 109756 111605 HC_gene_6133_tx_24 1 - 109756 111605 . 2 1399,211 0,1639 -chrXII 109756 111605 HC_gene_6133_tx_25 1 - 109756 111605 . 2 804,994 0,856 -chrXII 109756 111605 HC_gene_6133_tx_26 1 - 109756 111605 . 2 511,710 0,1140 -chrXII 111841 116199 HC_gene_5732_tx_1 2 + 111841 116199 . 1 4359 0 -chrXII 112191 114313 HC_gene_6134_tx_1 4 - 112191 114313 . 1 2123 0 -chrXII 114502 116199 HC_gene_5732_tx_2 12 + 114502 116199 . 1 1698 0 -chrXII 115696 116102 LC_gene_6135_tx_1 1 - 115696 116102 . 1 407 0 -chrXII 116312 118644 HC_gene_5733_tx_1 2 + 116312 118644 . 1 2333 0 -chrXII 116312 121178 HC_gene_5733_tx_2 2 + 116312 121178 . 1 4867 0 -chrXII 117747 118644 HC_gene_5733_tx_3 1 + 117747 118644 . 1 898 0 -chrXII 117747 121178 HC_gene_5733_tx_4 1 + 117747 121178 . 1 3432 0 -chrXII 119441 121178 HC_gene_5733_tx_5 5 + 119441 121178 . 1 1738 0 -chrXII 119441 121272 HC_gene_5733_tx_6 1 + 119441 121272 . 1 1832 0 -chrXII 119520 121178 HC_gene_5733_tx_7 4 + 119520 121178 . 1 1659 0 -chrXII 120665 121178 HC_gene_5733_tx_8 6 + 120665 121178 . 1 514 0 -chrXII 120723 121178 HC_gene_5733_tx_9 5 + 120723 121178 . 1 456 0 -chrXII 121303 121793 HC_gene_5734_tx_1 249 + 121303 121793 . 1 491 0 -chrXII 121429 121793 HC_gene_5734_tx_2 16 + 121429 121793 . 1 365 0 -chrXII 121676 122477 HC_gene_6136_tx_1 10 - 121676 122477 . 1 802 0 -chrXII 121676 122625 HC_gene_6136_tx_2 1 - 121676 122625 . 1 950 0 -chrXII 121676 122810 HC_gene_6136_tx_3 3 - 121676 122810 . 1 1135 0 -chrXII 121676 123458 HC_gene_6136_tx_4 2 - 121676 123458 . 1 1783 0 -chrXII 121676 123554 HC_gene_6136_tx_5 1 - 121676 123554 . 1 1879 0 -chrXII 121676 123764 HC_gene_6136_tx_6 3 - 121676 123764 . 1 2089 0 -chrXII 121676 124003 HC_gene_6136_tx_7 3 - 121676 124003 . 1 2328 0 -chrXII 121676 124986 HC_gene_6136_tx_10 4 - 121676 124986 . 1 3311 0 -chrXII 121866 124958 LC_gene_5735_tx_1 1 + 121866 124958 . 1 3093 0 -chrXII 121906 122625 HC_gene_6136_tx_11 1 - 121906 122625 . 1 720 0 -chrXII 121909 122477 HC_gene_6136_tx_12 1 - 121909 122477 . 1 569 0 -chrXII 121921 122477 HC_gene_6136_tx_13 1 - 121921 122477 . 1 557 0 -chrXII 121922 122477 HC_gene_6136_tx_14 1 - 121922 122477 . 1 556 0 -chrXII 121924 122810 HC_gene_6136_tx_17 1 - 121924 122810 . 1 887 0 -chrXII 121927 122477 HC_gene_6136_tx_15 2 - 121927 122477 . 1 551 0 -chrXII 121928 123554 HC_gene_6136_tx_8 1 - 121928 123554 . 1 1627 0 -chrXII 121930 123458 HC_gene_6136_tx_9 1 - 121930 123458 . 1 1529 0 -chrXII 121939 122477 HC_gene_6136_tx_16 1 - 121939 122477 . 1 539 0 -chrXII 125364 125818 MC_gene_6137_tx_1 1 - 125364 125818 . 1 455 0 -chrXII 125480 127336 HC_gene_5736_tx_1 24 + 125480 127336 . 1 1857 0 -chrXII 125480 127336 HC_gene_5736_tx_2 1 + 125480 127336 . 2 1066,455 0,1402 -chrXII 125480 127336 HC_gene_5736_tx_3 1 + 125480 127336 . 2 1006,772 0,1085 -chrXII 125832 127336 HC_gene_5736_tx_4 5 + 125832 127336 . 1 1505 0 -chrXII 127511 129098 HC_gene_5737_tx_1 33 + 127511 129098 . 1 1588 0 -chrXII 127511 129098 HC_gene_5737_tx_2 1 + 127511 129098 . 2 261,1010 0,578 -chrXII 127511 129098 HC_gene_5737_tx_3 1 + 127511 129098 . 2 550,989 0,599 -chrXII 127511 129260 HC_gene_5737_tx_4 1 + 127511 129260 . 1 1750 0 -chrXII 128474 129098 HC_gene_5737_tx_5 8 + 128474 129098 . 1 625 0 -chrXII 129094 130856 HC_gene_6138_tx_1 20 - 129094 130856 . 1 1763 0 -chrXII 129094 130856 HC_gene_6138_tx_2 1 - 129094 130856 . 2 198,1498 0,265 -chrXII 129327 131192 MC_gene_5738_tx_1 1 + 129327 131192 . 1 1866 0 -chrXII 129474 130856 HC_gene_6138_tx_3 1 - 129474 130856 . 1 1383 0 -chrXII 130886 131295 MC_gene_5739_tx_1 1 + 130886 131295 . 1 410 0 -chrXII 131084 131452 HC_gene_6139_tx_1 285 - 131084 131452 . 1 369 0 -chrXII 131698 134103 HC_gene_5740_tx_1 23 + 131698 134103 . 1 2406 0 -chrXII 131698 134103 HC_gene_5740_tx_2 1 + 131698 134103 . 2 1315,1024 0,1382 -chrXII 131698 134103 HC_gene_5740_tx_3 1 + 131698 134103 . 2 797,1545 0,861 -chrXII 131698 134103 HC_gene_5740_tx_4 1 + 131698 134103 . 3 140,590,1467 0,270,939 -chrXII 132006 134103 HC_gene_5740_tx_5 10 + 132006 134103 . 1 2098 0 -chrXII 132006 134103 HC_gene_5740_tx_6 1 + 132006 134103 . 2 636,1122 0,976 -chrXII 132188 134103 HC_gene_5740_tx_7 12 + 132188 134103 . 1 1916 0 -chrXII 133227 134103 HC_gene_5740_tx_8 18 + 133227 134103 . 1 877 0 -chrXII 133227 134103 HC_gene_5740_tx_9 1 + 133227 134103 . 2 742,72 0,805 -chrXII 133456 134103 HC_gene_5740_tx_10 16 + 133456 134103 . 1 648 0 -chrXII 133701 134103 HC_gene_5740_tx_11 34 + 133701 134103 . 1 403 0 -chrXII 134025 136387 HC_gene_6140_tx_1 3 - 134025 136387 . 1 2363 0 -chrXII 134025 136387 HC_gene_6140_tx_2 1 - 134025 136387 . 2 226,2075 0,288 -chrXII 134093 136387 HC_gene_6140_tx_3 5 - 134093 136387 . 1 2295 0 -chrXII 134210 136387 HC_gene_6140_tx_4 1 - 134210 136387 . 1 2178 0 -chrXII 134232 136387 HC_gene_6140_tx_5 1 - 134232 136387 . 1 2156 0 -chrXII 134234 136387 HC_gene_6140_tx_6 2 - 134234 136387 . 1 2154 0 -chrXII 136547 137901 HC_gene_5741_tx_1 7 + 136547 137901 . 1 1355 0 -chrXII 136547 139743 HC_gene_5741_tx_2 1 + 136547 139743 . 1 3197 0 -chrXII 137846 138249 MC_gene_6141_tx_1 1 - 137846 138249 . 1 404 0 -chrXII 139964 140549 LC_gene_5742_tx_1 1 + 139964 140549 . 1 586 0 -chrXII 141066 143021 HC_gene_5743_tx_1 15 + 141066 143021 . 1 1956 0 -chrXII 143035 143743 LC_gene_6142_tx_1 1 - 143035 143743 . 1 709 0 -chrXII 143196 146144 HC_gene_5744_tx_1 5 + 143196 146144 . 1 2949 0 -chrXII 146033 147084 LC_gene_6143_tx_1 1 - 146033 147084 . 1 1052 0 -chrXII 146275 147670 HC_gene_5745_tx_1 11 + 146275 147670 . 1 1396 0 -chrXII 147836 150215 HC_gene_5746_tx_1 4 + 147836 150215 . 1 2380 0 -chrXII 147836 150340 HC_gene_5746_tx_2 1 + 147836 150340 . 1 2505 0 -chrXII 147836 150342 HC_gene_5746_tx_3 1 + 147836 150342 . 1 2507 0 -chrXII 147836 150345 HC_gene_5746_tx_4 1 + 147836 150345 . 1 2510 0 -chrXII 149739 150215 HC_gene_5746_tx_5 1 + 149739 150215 . 1 477 0 -chrXII 149739 150338 HC_gene_5746_tx_6 1 + 149739 150338 . 1 600 0 -chrXII 149739 150340 HC_gene_5746_tx_7 2 + 149739 150340 . 1 602 0 -chrXII 149739 150341 HC_gene_5746_tx_8 1 + 149739 150341 . 1 603 0 -chrXII 149739 150342 HC_gene_5746_tx_9 1 + 149739 150342 . 1 604 0 -chrXII 149739 150345 HC_gene_5746_tx_10 1 + 149739 150345 . 1 607 0 -chrXII 151101 153450 HC_gene_5747_tx_1 1 + 151101 153450 . 1 2350 0 -chrXII 151314 153989 HC_gene_6144_tx_1 10 - 151314 153989 . 1 2676 0 -chrXII 154298 156180 HC_gene_6145_tx_1 9 - 154298 156180 . 1 1883 0 -chrXII 154298 156365 HC_gene_6145_tx_2 48 - 154298 156365 . 1 2068 0 -chrXII 154298 156365 HC_gene_6145_tx_3 1 - 154298 156365 . 2 1007,1025 0,1043 -chrXII 154298 156365 HC_gene_6145_tx_4 1 - 154298 156365 . 2 940,1027 0,1041 -chrXII 154298 156365 HC_gene_6145_tx_5 1 - 154298 156365 . 2 455,1522 0,546 -chrXII 154298 156365 HC_gene_6145_tx_6 1 - 154298 156365 . 2 1577,230 0,1838 -chrXII 154298 156365 HC_gene_6145_tx_7 1 - 154298 156365 . 2 831,1025 0,1043 -chrXII 154298 156365 HC_gene_6145_tx_8 1 - 154298 156365 . 2 1041,931 0,1137 -chrXII 156518 156935 MC_gene_5748_tx_1 1 + 156518 156935 . 1 418 0 -chrXII 156765 157752 HC_gene_6146_tx_1 106 - 156765 157752 . 1 988 0 -chrXII 157859 159658 MC_gene_6147_tx_1 1 - 157859 159658 . 1 1800 0 -chrXII 158056 158959 HC_gene_5749_tx_1 2 + 158056 158959 . 1 904 0 -chrXII 159488 159859 MC_gene_6148_tx_1 1 - 159488 159859 . 1 372 0 -chrXII 159866 161563 HC_gene_5750_tx_1 1 + 159866 161563 . 1 1698 0 -chrXII 160020 161563 HC_gene_5750_tx_2 23 + 160020 161563 . 1 1544 0 -chrXII 160020 161563 HC_gene_5750_tx_3 1 + 160020 161563 . 2 424,802 0,742 -chrXII 160088 161563 HC_gene_5750_tx_4 1 + 160088 161563 . 1 1476 0 -chrXII 160143 161563 HC_gene_5750_tx_5 7 + 160143 161563 . 1 1421 0 -chrXII 161493 162270 MC_gene_6149_tx_1 1 - 161493 162270 . 1 778 0 -chrXII 161554 164069 MC_gene_6149_tx_2 1 - 161554 164069 . 1 2516 0 -chrXII 161659 161912 MC_gene_6149_tx_3 1 - 161659 161912 . 1 254 0 -chrXII 164384 165467 HC_gene_5751_tx_1 48 + 164384 165467 . 1 1084 0 -chrXII 164384 165574 HC_gene_5751_tx_2 2 + 164384 165574 . 1 1191 0 -chrXII 164521 165173 MC_gene_6150_tx_1 1 - 164521 165173 . 1 653 0 -chrXII 165302 166195 HC_gene_6151_tx_1 157 - 165302 166195 . 1 894 0 -chrXII 166386 167264 HC_gene_5752_tx_1 184 + 166386 167264 . 1 879 0 -chrXII 166604 167264 HC_gene_5752_tx_2 17 + 166604 167264 . 1 661 0 -chrXII 166714 167264 HC_gene_5752_tx_3 15 + 166714 167264 . 1 551 0 -chrXII 166810 167264 HC_gene_5752_tx_4 49 + 166810 167264 . 1 455 0 -chrXII 167137 167814 HC_gene_6152_tx_1 30 - 167137 167814 . 1 678 0 -chrXII 167434 167891 MC_gene_5753_tx_1 1 + 167434 167891 . 1 458 0 -chrXII 169036 169475 MC_gene_6153_tx_1 1 - 169036 169475 . 1 440 0 -chrXII 169053 169975 HC_gene_5754_tx_1 42 + 169053 169975 . 1 923 0 -chrXII 169759 170318 MC_gene_6154_tx_1 1 - 169759 170318 . 1 560 0 -chrXII 170882 171657 LC_gene_6155_tx_1 1 - 170882 171657 . 1 776 0 -chrXII 171722 172104 LC_gene_5755_tx_1 1 + 171722 172104 . 1 383 0 -chrXII 171970 175019 HC_gene_6156_tx_1 2 - 171970 175019 . 1 3050 0 -chrXII 173705 175019 HC_gene_6156_tx_2 2 - 173705 175019 . 1 1315 0 -chrXII 175173 176919 HC_gene_5756_tx_1 9 + 175173 176919 . 1 1747 0 -chrXII 175173 176919 HC_gene_5756_tx_2 1 + 175173 176919 . 2 88,1532 0,215 -chrXII 175173 177208 HC_gene_5756_tx_3 4 + 175173 177208 . 1 2036 0 -chrXII 176474 177109 HC_gene_6157_tx_1 1 - 176474 177109 . 1 636 0 -chrXII 176474 177459 HC_gene_6157_tx_2 10 - 176474 177459 . 1 986 0 -chrXII 176600 177459 HC_gene_6157_tx_3 6 - 176600 177459 . 1 860 0 -chrXII 176752 177109 HC_gene_6157_tx_6 9 - 176752 177109 . 1 358 0 -chrXII 176752 177459 HC_gene_6157_tx_4 60 - 176752 177459 . 1 708 0 -chrXII 176752 177459 HC_gene_6157_tx_5 1 - 176752 177459 . 2 473,160 0,548 -chrXII 177599 178709 HC_gene_5757_tx_1 76 + 177599 178709 . 1 1111 0 -chrXII 177599 178709 HC_gene_5757_tx_2 1 + 177599 178709 . 2 277,704 0,407 -chrXII 177725 178709 HC_gene_5757_tx_3 1 + 177725 178709 . 1 985 0 -chrXII 177794 178709 HC_gene_5757_tx_4 13 + 177794 178709 . 1 916 0 -chrXII 178324 178709 HC_gene_5757_tx_5 10 + 178324 178709 . 1 386 0 -chrXII 178601 179070 HC_gene_6158_tx_1 12 - 178601 179070 . 1 470 0 -chrXII 178601 179334 HC_gene_6158_tx_2 7 - 178601 179334 . 1 734 0 -chrXII 178601 179663 HC_gene_6158_tx_3 47 - 178601 179663 . 1 1063 0 -chrXII 180028 181621 HC_gene_5758_tx_1 4 + 180028 181621 . 1 1594 0 -chrXII 180028 181735 HC_gene_5758_tx_2 23 + 180028 181735 . 1 1708 0 -chrXII 180028 181735 HC_gene_5758_tx_3 1 + 180028 181735 . 2 925,730 0,978 -chrXII 180292 181621 HC_gene_5758_tx_4 5 + 180292 181621 . 1 1330 0 -chrXII 180292 181735 HC_gene_5758_tx_5 6 + 180292 181735 . 1 1444 0 -chrXII 180512 181735 HC_gene_5758_tx_6 4 + 180512 181735 . 1 1224 0 -chrXII 180603 181621 HC_gene_5758_tx_7 7 + 180603 181621 . 1 1019 0 -chrXII 180603 181621 HC_gene_5758_tx_8 1 + 180603 181621 . 2 180,763 0,256 -chrXII 180603 181735 HC_gene_5758_tx_9 26 + 180603 181735 . 1 1133 0 -chrXII 181539 182165 HC_gene_6159_tx_1 1 - 181539 182165 . 1 627 0 -chrXII 181539 183455 HC_gene_6159_tx_3 6 - 181539 183455 . 1 1917 0 -chrXII 181539 183455 HC_gene_6159_tx_4 1 - 181539 183455 . 2 1233,608 0,1309 -chrXII 181597 182165 HC_gene_6159_tx_2 4 - 181597 182165 . 1 569 0 -chrXII 181597 182787 HC_gene_6159_tx_8 5 - 181597 182787 . 1 1191 0 -chrXII 181597 182787 HC_gene_6159_tx_9 1 - 181597 182787 . 2 560,393 0,798 -chrXII 181597 183335 HC_gene_6159_tx_5 4 - 181597 183335 . 1 1739 0 -chrXII 181597 183335 HC_gene_6159_tx_6 1 - 181597 183335 . 2 1155,518 0,1221 -chrXII 181597 183455 HC_gene_6159_tx_7 30 - 181597 183455 . 1 1859 0 -chrXII 183590 184212 HC_gene_5759_tx_1 52 + 183590 184212 . 1 623 0 -chrXII 183590 184345 HC_gene_5759_tx_2 2 + 183590 184345 . 1 756 0 -chrXII 184108 184558 HC_gene_6160_tx_1 11 - 184108 184558 . 1 451 0 -chrXII 184108 184671 HC_gene_6160_tx_2 12 - 184108 184671 . 1 564 0 -chrXII 184108 184739 HC_gene_6160_tx_3 2 - 184108 184739 . 1 632 0 -chrXII 184108 184809 HC_gene_6160_tx_4 3 - 184108 184809 . 1 702 0 -chrXII 184108 184951 HC_gene_6160_tx_5 89 - 184108 184951 . 1 844 0 -chrXII 184995 185147 HC_gene_6161_tx_1 1 - 184995 185147 . 1 153 0 -chrXII 185002 187318 HC_gene_6162_tx_1 1 - 185002 187318 . 1 2317 0 -chrXII 185007 187318 HC_gene_6162_tx_2 1 - 185007 187318 . 1 2312 0 -chrXII 185010 187318 HC_gene_6162_tx_3 1 - 185010 187318 . 1 2309 0 -chrXII 185024 187318 HC_gene_6162_tx_4 1 - 185024 187318 . 1 2295 0 -chrXII 185025 187318 HC_gene_6162_tx_5 1 - 185025 187318 . 1 2294 0 -chrXII 185035 187318 HC_gene_6162_tx_6 1 - 185035 187318 . 1 2284 0 -chrXII 185042 187318 HC_gene_6162_tx_7 1 - 185042 187318 . 1 2277 0 -chrXII 185053 186928 HC_gene_6162_tx_8 1 - 185053 186928 . 1 1876 0 -chrXII 185066 187318 HC_gene_6162_tx_9 1 - 185066 187318 . 1 2253 0 -chrXII 185068 187318 HC_gene_6162_tx_10 1 - 185068 187318 . 1 2251 0 -chrXII 185077 185530 LC_gene_5760_tx_1 1 + 185077 185530 . 1 454 0 -chrXII 185079 186928 HC_gene_6162_tx_11 1 - 185079 186928 . 1 1850 0 -chrXII 185079 187318 HC_gene_6162_tx_12 1 - 185079 187318 . 1 2240 0 -chrXII 185083 187318 HC_gene_6162_tx_13 1 - 185083 187318 . 1 2236 0 -chrXII 185087 186928 HC_gene_6162_tx_14 1 - 185087 186928 . 1 1842 0 -chrXII 185088 186928 HC_gene_6162_tx_15 1 - 185088 186928 . 1 1841 0 -chrXII 185092 186928 HC_gene_6162_tx_16 1 - 185092 186928 . 1 1837 0 -chrXII 185097 187318 HC_gene_6162_tx_17 3 - 185097 187318 . 1 2222 0 -chrXII 185108 187318 HC_gene_6162_tx_18 2 - 185108 187318 . 1 2211 0 -chrXII 185109 187318 HC_gene_6162_tx_19 1 - 185109 187318 . 1 2210 0 -chrXII 185110 187318 HC_gene_6162_tx_20 1 - 185110 187318 . 1 2209 0 -chrXII 185115 187318 HC_gene_6162_tx_21 1 - 185115 187318 . 1 2204 0 -chrXII 185126 187318 HC_gene_6162_tx_22 1 - 185126 187318 . 1 2193 0 -chrXII 187296 193459 MC_gene_6163_tx_1 1 - 187296 193459 . 1 6164 0 -chrXII 187608 191381 MC_gene_6163_tx_2 1 - 187608 191381 . 1 3774 0 -chrXII 187653 188505 HC_gene_5761_tx_1 1 + 187653 188505 . 1 853 0 -chrXII 188076 188505 HC_gene_5761_tx_2 1 + 188076 188505 . 1 430 0 -chrXII 188803 193282 MC_gene_6163_tx_3 1 - 188803 193282 . 2 1299,3104 0,1376 -chrXII 189140 190449 MC_gene_6163_tx_4 1 - 189140 190449 . 1 1310 0 -chrXII 190932 193078 MC_gene_6163_tx_5 1 - 190932 193078 . 1 2147 0 -chrXII 192701 192924 MC_gene_6163_tx_6 1 - 192701 192924 . 1 224 0 -chrXII 193483 193958 MC_gene_5762_tx_1 1 + 193483 193958 . 1 476 0 -chrXII 193698 194203 MC_gene_5763_tx_1 1 + 193698 194203 . 1 506 0 -chrXII 194402 195293 HC_gene_5764_tx_1 165 + 194402 195293 . 1 892 0 -chrXII 194402 195293 HC_gene_5764_tx_2 1 + 194402 195293 . 2 81,762 0,130 -chrXII 194402 195293 HC_gene_5764_tx_3 1 + 194402 195293 . 2 304,538 0,354 -chrXII 194402 195358 HC_gene_5764_tx_4 4 + 194402 195358 . 1 957 0 -chrXII 194623 195293 HC_gene_5764_tx_5 12 + 194623 195293 . 1 671 0 -chrXII 194766 195293 HC_gene_5764_tx_6 28 + 194766 195293 . 1 528 0 -chrXII 194766 195358 HC_gene_5764_tx_7 1 + 194766 195358 . 1 593 0 -chrXII 194854 195293 HC_gene_5764_tx_8 14 + 194854 195293 . 1 440 0 -chrXII 194914 195293 HC_gene_5764_tx_9 12 + 194914 195293 . 1 380 0 -chrXII 195330 195981 HC_gene_6164_tx_1 5 - 195330 195981 . 1 652 0 -chrXII 195330 196386 HC_gene_6164_tx_2 1 - 195330 196386 . 1 1057 0 -chrXII 195330 196585 HC_gene_6164_tx_3 32 - 195330 196585 . 1 1256 0 -chrXII 196790 197298 HC_gene_6165_tx_1 71 - 196790 197298 . 1 509 0 -chrXII 196790 197382 HC_gene_6165_tx_2 26 - 196790 197382 . 1 593 0 -chrXII 196790 197557 HC_gene_6165_tx_3 28 - 196790 197557 . 1 768 0 -chrXII 196790 197636 HC_gene_6165_tx_4 40 - 196790 197636 . 1 847 0 -chrXII 196790 197755 HC_gene_6165_tx_5 33 - 196790 197755 . 1 966 0 -chrXII 196790 197971 HC_gene_6165_tx_6 24 - 196790 197971 . 1 1182 0 -chrXII 196790 198110 HC_gene_6165_tx_7 1 - 196790 198110 . 2 442,829 0,492 -chrXII 196790 198114 HC_gene_6165_tx_8 276 - 196790 198114 . 1 1325 0 -chrXII 196790 198114 HC_gene_6165_tx_9 1 - 196790 198114 . 2 578,117 0,1208 -chrXII 196790 198114 HC_gene_6165_tx_10 1 - 196790 198114 . 3 96,500,407 0,247,918 -chrXII 196790 198114 HC_gene_6165_tx_11 1 - 196790 198114 . 2 1008,183 0,1142 -chrXII 196790 198114 HC_gene_6165_tx_12 1 - 196790 198114 . 2 246,1002 0,323 -chrXII 196790 198114 HC_gene_6165_tx_13 1 - 196790 198114 . 2 724,203 0,1122 -chrXII 196790 198114 HC_gene_6165_tx_14 1 - 196790 198114 . 2 945,326 0,999 -chrXII 196797 198335 MC_gene_5765_tx_1 1 + 196797 198335 . 1 1539 0 -chrXII 197567 198114 HC_gene_6165_tx_15 2 - 197567 198114 . 1 548 0 -chrXII 198784 199264 HC_gene_5766_tx_1 10 + 198784 199264 . 1 481 0 -chrXII 198784 199364 HC_gene_5766_tx_2 15 + 198784 199364 . 1 581 0 -chrXII 198784 199533 HC_gene_5766_tx_3 92 + 198784 199533 . 1 750 0 -chrXII 198888 199533 HC_gene_5766_tx_4 8 + 198888 199533 . 1 646 0 -chrXII 199107 199533 HC_gene_5766_tx_5 9 + 199107 199533 . 1 427 0 -chrXII 199441 199828 HC_gene_6166_tx_1 26 - 199441 199828 . 1 388 0 -chrXII 199441 199884 HC_gene_6166_tx_2 41 - 199441 199884 . 1 444 0 -chrXII 199441 199990 HC_gene_6166_tx_3 18 - 199441 199990 . 1 550 0 -chrXII 199441 199990 HC_gene_6166_tx_4 1 - 199441 199990 . 2 242,271 0,279 -chrXII 199441 200271 HC_gene_6166_tx_5 25 - 199441 200271 . 1 831 0 -chrXII 199441 200436 HC_gene_6166_tx_6 10 - 199441 200436 . 1 996 0 -chrXII 199441 200643 HC_gene_6166_tx_7 11 - 199441 200643 . 1 1203 0 -chrXII 199441 200720 HC_gene_6166_tx_8 12 - 199441 200720 . 1 1280 0 -chrXII 199441 200786 HC_gene_6166_tx_9 15 - 199441 200786 . 1 1346 0 -chrXII 199441 201126 HC_gene_6166_tx_10 6 - 199441 201126 . 1 1686 0 -chrXII 199441 201207 HC_gene_6166_tx_11 5 - 199441 201207 . 1 1767 0 -chrXII 199441 201460 HC_gene_6166_tx_12 98 - 199441 201460 . 1 2020 0 -chrXII 199441 201460 HC_gene_6166_tx_13 1 - 199441 201460 . 2 1545,164 0,1856 -chrXII 199441 201460 HC_gene_6166_tx_14 1 - 199441 201460 . 2 719,1259 0,761 -chrXII 199441 201460 HC_gene_6166_tx_15 1 - 199441 201460 . 2 902,1070 0,950 -chrXII 199441 201460 HC_gene_6166_tx_16 1 - 199441 201460 . 2 507,1259 0,761 -chrXII 199441 201460 HC_gene_6166_tx_17 1 - 199441 201460 . 2 719,1251 0,769 -chrXII 199441 201460 HC_gene_6166_tx_18 1 - 199441 201460 . 2 902,1061 0,959 -chrXII 201729 201934 HC_gene_5767_tx_1 12 + 201729 201934 . 1 206 0 -chrXII 201880 202277 HC_gene_6167_tx_1 592 - 201880 202277 . 1 398 0 -chrXII 201880 202418 HC_gene_6167_tx_2 537 - 201880 202418 . 1 539 0 -chrXII 201880 202613 HC_gene_6167_tx_3 3610 - 201880 202613 . 1 734 0 -chrXII 201880 202705 HC_gene_6167_tx_4 50 - 201880 202705 . 1 826 0 -chrXII 202983 203198 MC_gene_5768_tx_1 1 + 202983 203198 . 1 216 0 -chrXII 203136 204718 HC_gene_6168_tx_1 5 - 203136 204718 . 1 1583 0 -chrXII 203263 204810 HC_gene_5769_tx_1 1 + 203263 204810 . 1 1548 0 -chrXII 203550 204810 HC_gene_5769_tx_2 2 + 203550 204810 . 1 1261 0 -chrXII 204941 208581 HC_gene_5770_tx_1 3 + 204941 208581 . 1 3641 0 -chrXII 204941 208581 HC_gene_5770_tx_2 1 + 204941 208581 . 2 1220,2339 0,1302 -chrXII 208131 208581 HC_gene_5770_tx_3 7 + 208131 208581 . 1 451 0 -chrXII 208237 208581 HC_gene_5770_tx_4 6 + 208237 208581 . 1 345 0 -chrXII 208707 210438 HC_gene_5771_tx_1 47 + 208707 210438 . 1 1732 0 -chrXII 208707 210438 HC_gene_5771_tx_2 1 + 208707 210438 . 2 467,1117 0,615 -chrXII 208707 210438 HC_gene_5771_tx_3 1 + 208707 210438 . 3 511,920,195 0,565,1537 -chrXII 208707 210438 HC_gene_5771_tx_4 1 + 208707 210438 . 2 799,539 0,1193 -chrXII 208707 210438 HC_gene_5771_tx_5 1 + 208707 210438 . 2 398,878 0,854 -chrXII 208707 210438 HC_gene_5771_tx_6 1 + 208707 210438 . 2 484,900 0,832 -chrXII 209680 210438 HC_gene_5771_tx_7 10 + 209680 210438 . 1 759 0 -chrXII 210133 210438 HC_gene_5771_tx_8 17 + 210133 210438 . 1 306 0 -chrXII 210324 210836 HC_gene_6169_tx_1 17 - 210324 210836 . 1 513 0 -chrXII 210324 212099 HC_gene_6169_tx_2 65 - 210324 212099 . 1 1776 0 -chrXII 210324 212099 HC_gene_6169_tx_3 1 - 210324 212099 . 2 1371,232 0,1544 -chrXII 210324 212099 HC_gene_6169_tx_4 1 - 210324 212099 . 2 1010,579 0,1197 -chrXII 210457 210836 HC_gene_6169_tx_7 1 - 210457 210836 . 1 380 0 -chrXII 210457 212099 HC_gene_6169_tx_5 3 - 210457 212099 . 1 1643 0 -chrXII 210457 212099 HC_gene_6169_tx_6 1 - 210457 212099 . 2 790,526 0,1117 -chrXII 210846 211189 LC_gene_5772_tx_1 1 + 210846 211189 . 1 344 0 -chrXII 211613 212210 MC_gene_5773_tx_1 1 + 211613 212210 . 1 598 0 -chrXII 212023 213579 HC_gene_6170_tx_1 1 - 212023 213579 . 1 1557 0 -chrXII 212023 214462 HC_gene_6170_tx_2 1 - 212023 214462 . 1 2440 0 -chrXII 212023 214479 HC_gene_6170_tx_3 5 - 212023 214479 . 1 2457 0 -chrXII 212414 213399 LC_gene_5774_tx_1 1 + 212414 213399 . 1 986 0 -chrXII 214879 215723 MC_gene_6171_tx_1 1 - 214879 215723 . 1 845 0 -chrXII 215128 220762 MC_gene_6172_tx_1 1 - 215128 220762 . 1 5635 0 -chrXII 221088 222173 HC_gene_6173_tx_1 1 - 221088 222173 . 1 1086 0 -chrXII 221216 222173 HC_gene_6173_tx_2 10 - 221216 222173 . 1 958 0 -chrXII 221228 221485 HC_gene_5775_tx_1 1 + 221228 221485 . 1 258 0 -chrXII 221228 221651 HC_gene_5775_tx_2 1 + 221228 221651 . 1 424 0 -chrXII 221285 222173 HC_gene_6173_tx_3 43 - 221285 222173 . 1 889 0 -chrXII 221474 222173 HC_gene_6173_tx_4 1 - 221474 222173 . 1 700 0 -chrXII 221602 222173 HC_gene_6173_tx_5 1 - 221602 222173 . 1 572 0 -chrXII 222337 222619 HC_gene_5776_tx_1 9 + 222337 222619 . 1 283 0 -chrXII 222548 224577 HC_gene_6174_tx_1 1 - 222548 224577 . 1 2030 0 -chrXII 224157 224703 HC_gene_5777_tx_1 6 + 224157 224703 . 1 547 0 -chrXII 224602 225048 HC_gene_6175_tx_1 23 - 224602 225048 . 1 447 0 -chrXII 224602 225254 HC_gene_6175_tx_2 167 - 224602 225254 . 1 653 0 -chrXII 224751 225254 HC_gene_6175_tx_3 1 - 224751 225254 . 1 504 0 -chrXII 224752 225254 HC_gene_6175_tx_4 1 - 224752 225254 . 1 503 0 -chrXII 224753 225254 HC_gene_6175_tx_5 1 - 224753 225254 . 1 502 0 -chrXII 224756 225048 HC_gene_6175_tx_48 1 - 224756 225048 . 1 293 0 -chrXII 224756 225254 HC_gene_6175_tx_6 22 - 224756 225254 . 1 499 0 -chrXII 224757 225048 HC_gene_6175_tx_49 1 - 224757 225048 . 1 292 0 -chrXII 224759 225254 HC_gene_6175_tx_7 1 - 224759 225254 . 1 496 0 -chrXII 224761 225254 HC_gene_6175_tx_8 2 - 224761 225254 . 1 494 0 -chrXII 224761 228502 HC_gene_6176_tx_1 1 - 224761 228502 . 2 2937,181 0,3561 -chrXII 224762 225254 HC_gene_6175_tx_9 6 - 224762 225254 . 1 493 0 -chrXII 224763 225254 HC_gene_6175_tx_10 6 - 224763 225254 . 1 492 0 -chrXII 224764 225048 HC_gene_6175_tx_50 1 - 224764 225048 . 1 285 0 -chrXII 224764 225254 HC_gene_6175_tx_11 10 - 224764 225254 . 1 491 0 -chrXII 224766 225048 HC_gene_6175_tx_51 1 - 224766 225048 . 1 283 0 -chrXII 224766 225254 HC_gene_6175_tx_12 5 - 224766 225254 . 1 489 0 -chrXII 224767 225254 HC_gene_6175_tx_13 1 - 224767 225254 . 1 488 0 -chrXII 224768 225254 HC_gene_6175_tx_14 2 - 224768 225254 . 1 487 0 -chrXII 224769 225254 HC_gene_6175_tx_15 1 - 224769 225254 . 1 486 0 -chrXII 224773 225048 HC_gene_6175_tx_52 1 - 224773 225048 . 1 276 0 -chrXII 224774 225048 HC_gene_6175_tx_53 2 - 224774 225048 . 1 275 0 -chrXII 224774 225254 HC_gene_6175_tx_16 4 - 224774 225254 . 1 481 0 -chrXII 224775 225048 HC_gene_6175_tx_54 1 - 224775 225048 . 1 274 0 -chrXII 224775 225254 HC_gene_6175_tx_17 4 - 224775 225254 . 1 480 0 -chrXII 224776 225254 HC_gene_6175_tx_18 1 - 224776 225254 . 1 479 0 -chrXII 224777 225254 HC_gene_6175_tx_19 1 - 224777 225254 . 1 478 0 -chrXII 224780 225254 HC_gene_6175_tx_20 2 - 224780 225254 . 1 475 0 -chrXII 224782 225254 HC_gene_6175_tx_21 4 - 224782 225254 . 1 473 0 -chrXII 224785 225254 HC_gene_6175_tx_22 14 - 224785 225254 . 1 470 0 -chrXII 224785 228502 HC_gene_6176_tx_2 1 - 224785 228502 . 1 3718 0 -chrXII 224786 225254 HC_gene_6175_tx_23 2 - 224786 225254 . 1 469 0 -chrXII 224787 225254 HC_gene_6175_tx_24 2 - 224787 225254 . 1 468 0 -chrXII 224788 225254 HC_gene_6175_tx_25 4 - 224788 225254 . 1 467 0 -chrXII 224789 225048 HC_gene_6175_tx_55 1 - 224789 225048 . 1 260 0 -chrXII 224789 225254 HC_gene_6175_tx_26 4 - 224789 225254 . 1 466 0 -chrXII 224790 225254 HC_gene_6175_tx_27 1 - 224790 225254 . 1 465 0 -chrXII 224792 225254 HC_gene_6175_tx_28 1 - 224792 225254 . 1 463 0 -chrXII 224793 225048 HC_gene_6175_tx_56 1 - 224793 225048 . 1 256 0 -chrXII 224794 225254 HC_gene_6175_tx_29 1 - 224794 225254 . 1 461 0 -chrXII 224797 225254 HC_gene_6175_tx_30 3 - 224797 225254 . 1 458 0 -chrXII 224798 225254 HC_gene_6175_tx_31 3 - 224798 225254 . 1 457 0 -chrXII 224800 225254 HC_gene_6175_tx_32 1 - 224800 225254 . 1 455 0 -chrXII 224801 225254 HC_gene_6175_tx_33 1 - 224801 225254 . 1 454 0 -chrXII 224803 225254 HC_gene_6175_tx_34 1 - 224803 225254 . 1 452 0 -chrXII 224809 225254 HC_gene_6175_tx_35 2 - 224809 225254 . 1 446 0 -chrXII 224813 225254 HC_gene_6175_tx_36 1 - 224813 225254 . 1 442 0 -chrXII 224814 225254 HC_gene_6175_tx_37 1 - 224814 225254 . 1 441 0 -chrXII 224815 225254 HC_gene_6175_tx_38 2 - 224815 225254 . 1 440 0 -chrXII 224819 225254 HC_gene_6175_tx_39 2 - 224819 225254 . 1 436 0 -chrXII 224822 225254 HC_gene_6175_tx_40 1 - 224822 225254 . 1 433 0 -chrXII 224825 225254 HC_gene_6175_tx_41 1 - 224825 225254 . 1 430 0 -chrXII 224830 225254 HC_gene_6175_tx_42 5 - 224830 225254 . 1 425 0 -chrXII 224831 225254 HC_gene_6175_tx_43 1 - 224831 225254 . 1 424 0 -chrXII 224837 225254 HC_gene_6175_tx_44 1 - 224837 225254 . 1 418 0 -chrXII 224845 225254 HC_gene_6175_tx_45 1 - 224845 225254 . 1 410 0 -chrXII 224846 225254 HC_gene_6175_tx_46 1 - 224846 225254 . 1 409 0 -chrXII 224849 225254 HC_gene_6175_tx_47 1 - 224849 225254 . 1 406 0 -chrXII 224887 225293 HC_gene_5778_tx_1 8 + 224887 225293 . 1 407 0 -chrXII 225156 228502 HC_gene_6176_tx_3 1 - 225156 228502 . 2 2991,303 0,3044 -chrXII 225156 228502 HC_gene_6176_tx_4 1 - 225156 228502 . 1 3347 0 -chrXII 225359 228502 HC_gene_6176_tx_5 2 - 225359 228502 . 1 3144 0 -chrXII 225361 228502 HC_gene_6176_tx_6 1 - 225361 228502 . 1 3142 0 -chrXII 228656 228880 MC_gene_5779_tx_1 1 + 228656 228880 . 1 225 0 -chrXII 228774 229705 HC_gene_6177_tx_1 471 - 228774 229705 . 1 932 0 -chrXII 228774 229705 HC_gene_6177_tx_2 1 - 228774 229705 . 2 526,217 0,715 -chrXII 228774 229705 HC_gene_6177_tx_3 1 - 228774 229705 . 2 697,139 0,793 -chrXII 228774 229705 HC_gene_6177_tx_4 1 - 228774 229705 . 2 641,177 0,755 -chrXII 228774 229705 HC_gene_6177_tx_5 1 - 228774 229705 . 2 529,290 0,642 -chrXII 228774 229705 HC_gene_6177_tx_6 1 - 228774 229705 . 2 551,214 0,718 -chrXII 228774 229705 HC_gene_6177_tx_7 1 - 228774 229705 . 2 560,214 0,718 -chrXII 228774 229705 HC_gene_6177_tx_8 1 - 228774 229705 . 2 527,250 0,682 -chrXII 228774 229705 HC_gene_6177_tx_9 1 - 228774 229705 . 2 384,364 0,568 -chrXII 228774 229705 HC_gene_6177_tx_10 1 - 228774 229705 . 2 676,168 0,764 -chrXII 228774 229705 HC_gene_6177_tx_11 1 - 228774 229705 . 2 526,229 0,703 -chrXII 228774 229705 HC_gene_6177_tx_12 1 - 228774 229705 . 2 741,117 0,815 -chrXII 228900 230602 HC_gene_5780_tx_1 1 + 228900 230602 . 1 1703 0 -chrXII 229857 230484 HC_gene_6178_tx_1 80 - 229857 230484 . 1 628 0 -chrXII 229857 230484 HC_gene_6178_tx_2 1 - 229857 230484 . 2 59,488 0,140 -chrXII 229857 230484 HC_gene_6178_tx_3 1 - 229857 230484 . 2 423,142 0,486 -chrXII 230540 231192 HC_gene_6179_tx_1 2 - 230540 231192 . 1 653 0 -chrXII 230746 231247 HC_gene_5781_tx_1 4 + 230746 231247 . 1 502 0 -chrXII 230798 231247 HC_gene_5781_tx_2 36 + 230798 231247 . 1 450 0 -chrXII 230901 231247 HC_gene_5781_tx_3 31 + 230901 231247 . 1 347 0 -chrXII 231394 231699 HC_gene_5782_tx_1 3 + 231394 231699 . 1 306 0 -chrXII 231405 232060 HC_gene_6180_tx_1 8 - 231405 232060 . 1 656 0 -chrXII 231485 232060 HC_gene_6180_tx_2 2 - 231485 232060 . 1 576 0 -chrXII 231486 232060 HC_gene_6180_tx_3 1 - 231486 232060 . 1 575 0 -chrXII 231487 232060 HC_gene_6180_tx_4 3 - 231487 232060 . 1 574 0 -chrXII 231488 232060 HC_gene_6180_tx_5 1 - 231488 232060 . 1 573 0 -chrXII 231489 232060 HC_gene_6180_tx_6 1 - 231489 232060 . 1 572 0 -chrXII 231490 232060 HC_gene_6180_tx_7 1 - 231490 232060 . 1 571 0 -chrXII 231491 232060 HC_gene_6180_tx_8 1 - 231491 232060 . 1 570 0 -chrXII 231496 232060 HC_gene_6180_tx_9 1 - 231496 232060 . 1 565 0 -chrXII 231507 232060 HC_gene_6180_tx_10 2 - 231507 232060 . 1 554 0 -chrXII 231511 232060 HC_gene_6180_tx_11 2 - 231511 232060 . 1 550 0 -chrXII 231519 232060 HC_gene_6180_tx_12 1 - 231519 232060 . 1 542 0 -chrXII 231521 232060 HC_gene_6180_tx_13 1 - 231521 232060 . 1 540 0 -chrXII 231526 232060 HC_gene_6180_tx_14 1 - 231526 232060 . 1 535 0 -chrXII 231527 232060 HC_gene_6180_tx_15 6 - 231527 232060 . 1 534 0 -chrXII 231530 232060 HC_gene_6180_tx_16 4 - 231530 232060 . 1 531 0 -chrXII 231532 232060 HC_gene_6180_tx_17 4 - 231532 232060 . 1 529 0 -chrXII 231535 232060 HC_gene_6180_tx_18 7 - 231535 232060 . 1 526 0 -chrXII 231536 232060 HC_gene_6180_tx_19 1 - 231536 232060 . 2 78,388 0,137 -chrXII 231536 232060 HC_gene_6180_tx_20 11 - 231536 232060 . 1 525 0 -chrXII 231537 232060 HC_gene_6180_tx_21 5 - 231537 232060 . 1 524 0 -chrXII 231538 232060 HC_gene_6180_tx_22 2 - 231538 232060 . 1 523 0 -chrXII 231539 232060 HC_gene_6180_tx_23 11 - 231539 232060 . 1 522 0 -chrXII 231542 232060 HC_gene_6180_tx_24 3 - 231542 232060 . 1 519 0 -chrXII 231543 232060 HC_gene_6180_tx_25 8 - 231543 232060 . 1 518 0 -chrXII 231546 232060 HC_gene_6180_tx_26 5 - 231546 232060 . 1 515 0 -chrXII 231547 232060 HC_gene_6180_tx_27 4 - 231547 232060 . 1 514 0 -chrXII 231549 232060 HC_gene_6180_tx_28 1 - 231549 232060 . 1 512 0 -chrXII 231551 232060 HC_gene_6180_tx_29 1 - 231551 232060 . 1 510 0 -chrXII 231555 232060 HC_gene_6180_tx_30 2 - 231555 232060 . 1 506 0 -chrXII 231557 232060 HC_gene_6180_tx_31 3 - 231557 232060 . 1 504 0 -chrXII 231558 232060 HC_gene_6180_tx_32 1 - 231558 232060 . 1 503 0 -chrXII 231567 232060 HC_gene_6180_tx_33 1 - 231567 232060 . 1 494 0 -chrXII 231568 232060 HC_gene_6180_tx_34 8 - 231568 232060 . 1 493 0 -chrXII 231569 232060 HC_gene_6180_tx_35 3 - 231569 232060 . 1 492 0 -chrXII 231570 232060 HC_gene_6180_tx_36 1 - 231570 232060 . 1 491 0 -chrXII 231576 232060 HC_gene_6180_tx_37 1 - 231576 232060 . 1 485 0 -chrXII 231579 232060 HC_gene_6180_tx_38 3 - 231579 232060 . 1 482 0 -chrXII 231584 232060 HC_gene_6180_tx_39 2 - 231584 232060 . 1 477 0 -chrXII 231586 232060 HC_gene_6180_tx_40 1 - 231586 232060 . 1 475 0 -chrXII 231587 232060 HC_gene_6180_tx_41 1 - 231587 232060 . 1 474 0 -chrXII 231588 232060 HC_gene_6180_tx_42 2 - 231588 232060 . 1 473 0 -chrXII 231591 232060 HC_gene_6180_tx_43 6 - 231591 232060 . 1 470 0 -chrXII 231592 232060 HC_gene_6180_tx_44 1 - 231592 232060 . 1 469 0 -chrXII 231593 232060 HC_gene_6180_tx_45 4 - 231593 232060 . 1 468 0 -chrXII 231594 232060 HC_gene_6180_tx_46 17 - 231594 232060 . 1 467 0 -chrXII 231595 232060 HC_gene_6180_tx_47 29 - 231595 232060 . 1 466 0 -chrXII 231596 232060 HC_gene_6180_tx_48 1 - 231596 232060 . 1 465 0 -chrXII 231597 232060 HC_gene_6180_tx_49 3 - 231597 232060 . 1 464 0 -chrXII 231598 232060 HC_gene_6180_tx_50 6 - 231598 232060 . 1 463 0 -chrXII 231599 232060 HC_gene_6180_tx_51 2 - 231599 232060 . 1 462 0 -chrXII 231600 232060 HC_gene_6180_tx_52 9 - 231600 232060 . 1 461 0 -chrXII 231601 232060 HC_gene_6180_tx_53 6 - 231601 232060 . 1 460 0 -chrXII 231602 232060 HC_gene_6180_tx_54 3 - 231602 232060 . 1 459 0 -chrXII 231604 232060 HC_gene_6180_tx_55 3 - 231604 232060 . 1 457 0 -chrXII 231605 232060 HC_gene_6180_tx_56 52 - 231605 232060 . 1 456 0 -chrXII 231606 232060 HC_gene_6180_tx_57 1 - 231606 232060 . 1 455 0 -chrXII 231607 232060 HC_gene_6180_tx_58 4 - 231607 232060 . 1 454 0 -chrXII 231608 232060 HC_gene_6180_tx_59 36 - 231608 232060 . 1 453 0 -chrXII 231609 232060 HC_gene_6180_tx_60 33 - 231609 232060 . 1 452 0 -chrXII 231610 232060 HC_gene_6180_tx_61 6 - 231610 232060 . 1 451 0 -chrXII 231611 232060 HC_gene_6180_tx_62 180 - 231611 232060 . 1 450 0 -chrXII 231717 232072 MC_gene_5783_tx_1 1 + 231717 232072 . 1 356 0 -chrXII 232312 232845 HC_gene_6181_tx_1 2184 - 232312 232845 . 1 534 0 -chrXII 232312 232917 HC_gene_6181_tx_2 752 - 232312 232917 . 1 606 0 -chrXII 232312 233061 HC_gene_6181_tx_3 675 - 232312 233061 . 1 750 0 -chrXII 232312 233114 HC_gene_6181_tx_4 222 - 232312 233114 . 1 803 0 -chrXII 232312 233298 HC_gene_6181_tx_5 2364 - 232312 233298 . 1 987 0 -chrXII 232312 233640 HC_gene_6181_tx_6 136 - 232312 233640 . 1 1329 0 -chrXII 232312 233729 HC_gene_6181_tx_7 252 - 232312 233729 . 1 1418 0 -chrXII 232312 233886 HC_gene_6181_tx_8 983 - 232312 233886 . 1 1575 0 -chrXII 232312 234112 HC_gene_6181_tx_9 6408 - 232312 234112 . 1 1801 0 -chrXII 232418 234779 LC_gene_5784_tx_1 1 + 232418 234779 . 1 2362 0 -chrXII 234796 237714 HC_gene_6182_tx_1 1 - 234796 237714 . 1 2919 0 -chrXII 234815 237714 HC_gene_6182_tx_2 1 - 234815 237714 . 1 2900 0 -chrXII 234817 235787 HC_gene_6182_tx_5 1 - 234817 235787 . 1 971 0 -chrXII 234832 235787 HC_gene_6182_tx_6 1 - 234832 235787 . 1 956 0 -chrXII 234852 235672 HC_gene_5785_tx_1 1 + 234852 235672 . 1 821 0 -chrXII 234904 235787 HC_gene_6182_tx_7 3 - 234904 235787 . 1 884 0 -chrXII 234916 237714 HC_gene_6182_tx_3 1 - 234916 237714 . 1 2799 0 -chrXII 234940 235787 HC_gene_6182_tx_8 1 - 234940 235787 . 1 848 0 -chrXII 234945 237714 HC_gene_6182_tx_4 1 - 234945 237714 . 1 2770 0 -chrXII 234962 235787 HC_gene_6182_tx_9 1 - 234962 235787 . 1 826 0 -chrXII 237964 241681 HC_gene_6183_tx_1 2 - 237964 241681 . 1 3718 0 -chrXII 237964 241681 HC_gene_6183_tx_2 1 - 237964 241681 . 2 1106,2530 0,1188 -chrXII 238108 241681 HC_gene_6183_tx_3 1 - 238108 241681 . 2 429,3070 0,504 -chrXII 239348 239892 LC_gene_5786_tx_1 1 + 239348 239892 . 1 545 0 -chrXII 242189 243595 HC_gene_5787_tx_1 972 + 242189 243595 . 2 133,915 0,492 -chrXII 242189 243595 HC_gene_5787_tx_2 29 + 242189 243595 . 1 1407 0 -chrXII 242189 243595 HC_gene_5787_tx_3 7 + 242189 243595 . 2 137,915 0,492 -chrXII 242189 243595 HC_gene_5787_tx_4 8 + 242189 243595 . 2 127,915 0,492 -chrXII 242189 243595 HC_gene_5787_tx_5 4 + 242189 243595 . 2 119,909 0,498 -chrXII 242189 243595 HC_gene_5787_tx_6 3 + 242189 243595 . 2 133,820 0,587 -chrXII 242189 243746 HC_gene_5787_tx_7 8 + 242189 243746 . 2 133,1066 0,492 -chrXII 242753 243595 HC_gene_5787_tx_8 808 + 242753 243595 . 1 843 0 -chrXII 242753 243746 HC_gene_5787_tx_9 7 + 242753 243746 . 1 994 0 -chrXII 243149 243595 HC_gene_5787_tx_10 197 + 243149 243595 . 1 447 0 -chrXII 243781 245171 HC_gene_6184_tx_1 1 - 243781 245171 . 1 1391 0 -chrXII 243781 245198 HC_gene_6184_tx_2 26 - 243781 245198 . 1 1418 0 -chrXII 243781 245313 HC_gene_6184_tx_3 1 - 243781 245313 . 1 1533 0 -chrXII 243781 245332 HC_gene_6184_tx_4 1 - 243781 245332 . 1 1552 0 -chrXII 243781 245350 HC_gene_6184_tx_5 12 - 243781 245350 . 1 1570 0 -chrXII 244528 245620 LC_gene_5788_tx_1 1 + 244528 245620 . 1 1093 0 -chrXII 245481 246084 HC_gene_6185_tx_1 121 - 245481 246084 . 1 604 0 -chrXII 245481 246255 HC_gene_6185_tx_2 4 - 245481 246255 . 1 775 0 -chrXII 245578 246208 HC_gene_5789_tx_1 43 + 245578 246208 . 1 631 0 -chrXII 245848 246208 HC_gene_5789_tx_2 5 + 245848 246208 . 1 361 0 -chrXII 246233 246542 HC_gene_6186_tx_1 18 - 246233 246542 . 1 310 0 -chrXII 246233 246669 HC_gene_6186_tx_2 32 - 246233 246669 . 1 437 0 -chrXII 246233 246670 HC_gene_6186_tx_3 2 - 246233 246670 . 1 438 0 -chrXII 246233 246874 HC_gene_6186_tx_4 14 - 246233 246874 . 1 642 0 -chrXII 246233 246874 HC_gene_6186_tx_5 1 - 246233 246874 . 2 55,547 0,95 -chrXII 246233 246981 HC_gene_6186_tx_6 1 - 246233 246981 . 1 749 0 -chrXII 246233 246982 HC_gene_6186_tx_7 2 - 246233 246982 . 1 750 0 -chrXII 246233 246983 HC_gene_6186_tx_8 4 - 246233 246983 . 1 751 0 -chrXII 246233 246985 HC_gene_6186_tx_9 30 - 246233 246985 . 1 753 0 -chrXII 246233 246986 HC_gene_6186_tx_10 1 - 246233 246986 . 1 754 0 -chrXII 246233 246987 HC_gene_6186_tx_11 2 - 246233 246987 . 1 755 0 -chrXII 246233 246989 HC_gene_6186_tx_12 1 - 246233 246989 . 1 757 0 -chrXII 246233 246992 HC_gene_6186_tx_13 1 - 246233 246992 . 1 760 0 -chrXII 246233 246993 HC_gene_6186_tx_14 2 - 246233 246993 . 1 761 0 -chrXII 246233 246994 HC_gene_6186_tx_15 1 - 246233 246994 . 1 762 0 -chrXII 246233 246995 HC_gene_6186_tx_16 4 - 246233 246995 . 1 763 0 -chrXII 246233 246999 HC_gene_6186_tx_17 121 - 246233 246999 . 1 767 0 -chrXII 246233 246999 HC_gene_6186_tx_18 1 - 246233 246999 . 2 293,404 0,363 -chrXII 246233 247000 HC_gene_6186_tx_19 1 - 246233 247000 . 1 768 0 -chrXII 246233 247008 HC_gene_6186_tx_20 2 - 246233 247008 . 1 776 0 -chrXII 246233 247013 HC_gene_6186_tx_21 1 - 246233 247013 . 1 781 0 -chrXII 247194 248062 HC_gene_5790_tx_1 2 + 247194 248062 . 1 869 0 -chrXII 247194 248063 HC_gene_5790_tx_2 2 + 247194 248063 . 1 870 0 -chrXII 247194 248066 HC_gene_5790_tx_3 1 + 247194 248066 . 1 873 0 -chrXII 247194 248067 HC_gene_5790_tx_4 2 + 247194 248067 . 1 874 0 -chrXII 247194 248068 HC_gene_5790_tx_5 4 + 247194 248068 . 1 875 0 -chrXII 247194 248070 HC_gene_5790_tx_6 1 + 247194 248070 . 1 877 0 -chrXII 247194 248075 HC_gene_5790_tx_7 1 + 247194 248075 . 1 882 0 -chrXII 247194 248076 HC_gene_5790_tx_8 2 + 247194 248076 . 1 883 0 -chrXII 247194 248078 HC_gene_5790_tx_9 1 + 247194 248078 . 1 885 0 -chrXII 247194 248082 HC_gene_5790_tx_10 1 + 247194 248082 . 1 889 0 -chrXII 247194 248085 HC_gene_5790_tx_11 3 + 247194 248085 . 1 892 0 -chrXII 247194 248087 HC_gene_5790_tx_12 1 + 247194 248087 . 1 894 0 -chrXII 247194 248089 HC_gene_5790_tx_13 2 + 247194 248089 . 1 896 0 -chrXII 247194 248090 HC_gene_5790_tx_14 1 + 247194 248090 . 1 897 0 -chrXII 247194 248091 HC_gene_5790_tx_15 1 + 247194 248091 . 1 898 0 -chrXII 247194 248094 HC_gene_5790_tx_16 1 + 247194 248094 . 1 901 0 -chrXII 247194 248099 HC_gene_5790_tx_17 6 + 247194 248099 . 1 906 0 -chrXII 247194 248100 HC_gene_5790_tx_18 1 + 247194 248100 . 1 907 0 -chrXII 247194 248271 HC_gene_5790_tx_19 9 + 247194 248271 . 1 1078 0 -chrXII 247194 248653 HC_gene_5790_tx_20 16 + 247194 248653 . 1 1460 0 -chrXII 247194 248653 HC_gene_5790_tx_21 1 + 247194 248653 . 2 679,634 0,826 -chrXII 247194 248653 HC_gene_5790_tx_22 1 + 247194 248653 . 2 729,634 0,826 -chrXII 247993 248448 MC_gene_6187_tx_1 1 - 247993 248448 . 1 456 0 -chrXII 248482 249165 HC_gene_6188_tx_1 3 - 248482 249165 . 1 684 0 -chrXII 249344 250936 MC_gene_5791_tx_1 1 + 249344 250936 . 1 1593 0 -chrXII 251213 252890 HC_gene_6189_tx_1 2 - 251213 252890 . 1 1678 0 -chrXII 251213 253139 HC_gene_6189_tx_2 34 - 251213 253139 . 1 1927 0 -chrXII 251213 253139 HC_gene_6189_tx_3 1 - 251213 253139 . 2 270,1265 0,662 -chrXII 251213 253139 HC_gene_6189_tx_4 1 - 251213 253139 . 2 309,810 0,1117 -chrXII 253638 255086 HC_gene_5792_tx_1 1 + 253638 255086 . 1 1449 0 -chrXII 253791 254197 HC_gene_5792_tx_11 1 + 253791 254197 . 1 407 0 -chrXII 253791 255086 HC_gene_5792_tx_2 345 + 253791 255086 . 1 1296 0 -chrXII 253791 255086 HC_gene_5792_tx_3 1 + 253791 255086 . 2 26,940 0,356 -chrXII 253791 255086 HC_gene_5792_tx_4 1 + 253791 255086 . 2 169,799 0,497 -chrXII 253791 255086 HC_gene_5792_tx_5 1 + 253791 255086 . 2 242,651 0,645 -chrXII 253791 255086 HC_gene_5792_tx_6 1 + 253791 255086 . 2 241,631 0,665 -chrXII 253791 255086 HC_gene_5792_tx_7 1 + 253791 255086 . 2 149,1106 0,190 -chrXII 253791 255086 HC_gene_5792_tx_8 1 + 253791 255086 . 2 88,1124 0,172 -chrXII 253791 255086 HC_gene_5792_tx_9 1 + 253791 255086 . 2 241,940 0,356 -chrXII 253804 255086 HC_gene_5792_tx_10 1 + 253804 255086 . 2 914,335 0,948 -chrXII 254094 255086 HC_gene_5792_tx_12 8 + 254094 255086 . 1 993 0 -chrXII 254152 255086 HC_gene_5792_tx_13 50 + 254152 255086 . 1 935 0 -chrXII 254565 255086 HC_gene_5792_tx_14 97 + 254565 255086 . 1 522 0 -chrXII 254669 255017 LC_gene_6190_tx_1 1 - 254669 255017 . 1 349 0 -chrXII 254710 255086 HC_gene_5792_tx_15 35 + 254710 255086 . 1 377 0 -chrXII 254791 255086 HC_gene_5792_tx_16 39 + 254791 255086 . 1 296 0 -chrXII 255240 257967 HC_gene_5793_tx_1 11 + 255240 257967 . 1 2728 0 -chrXII 257864 258329 HC_gene_6191_tx_1 114 - 257864 258329 . 1 466 0 -chrXII 257864 258392 HC_gene_6191_tx_2 45 - 257864 258392 . 1 529 0 -chrXII 257864 258614 HC_gene_6191_tx_5 87 - 257864 258614 . 1 751 0 -chrXII 257864 258614 HC_gene_6191_tx_6 1 - 257864 258614 . 2 346,315 0,436 -chrXII 257864 258713 HC_gene_6191_tx_7 50 - 257864 258713 . 1 850 0 -chrXII 257864 258910 HC_gene_6191_tx_8 39 - 257864 258910 . 1 1047 0 -chrXII 257864 258990 HC_gene_6191_tx_9 139 - 257864 258990 . 1 1127 0 -chrXII 257864 258990 HC_gene_6191_tx_10 1 - 257864 258990 . 2 598,466 0,661 -chrXII 257864 259202 HC_gene_6191_tx_11 46 - 257864 259202 . 1 1339 0 -chrXII 257864 259202 HC_gene_6191_tx_12 1 - 257864 259202 . 2 756,438 0,901 -chrXII 257864 259441 HC_gene_6191_tx_13 591 - 257864 259441 . 1 1578 0 -chrXII 257864 259441 HC_gene_6191_tx_14 1 - 257864 259441 . 2 306,1070 0,508 -chrXII 257864 259441 HC_gene_6191_tx_15 1 - 257864 259441 . 2 941,476 0,1102 -chrXII 257864 259441 HC_gene_6191_tx_16 1 - 257864 259441 . 2 893,617 0,961 -chrXII 257864 259441 HC_gene_6191_tx_17 1 - 257864 259441 . 2 703,614 0,964 -chrXII 257864 259441 HC_gene_6191_tx_18 1 - 257864 259441 . 2 1067,368 0,1210 -chrXII 257864 260518 HC_gene_6191_tx_28 1 - 257864 260518 . 1 2655 0 -chrXII 257940 258329 HC_gene_6191_tx_3 14 - 257940 258329 . 1 390 0 -chrXII 257940 258392 HC_gene_6191_tx_4 2 - 257940 258392 . 1 453 0 -chrXII 257940 258614 HC_gene_6191_tx_19 21 - 257940 258614 . 1 675 0 -chrXII 257940 258713 HC_gene_6191_tx_20 1 - 257940 258713 . 1 774 0 -chrXII 257940 258910 HC_gene_6191_tx_21 5 - 257940 258910 . 1 971 0 -chrXII 257940 258990 HC_gene_6191_tx_22 15 - 257940 258990 . 1 1051 0 -chrXII 257940 258990 HC_gene_6191_tx_23 1 - 257940 258990 . 2 874,115 0,936 -chrXII 257940 259202 HC_gene_6191_tx_24 8 - 257940 259202 . 1 1263 0 -chrXII 257940 259441 HC_gene_6191_tx_25 90 - 257940 259441 . 1 1502 0 -chrXII 257940 259441 HC_gene_6191_tx_26 1 - 257940 259441 . 2 477,439 0,1063 -chrXII 257940 259441 HC_gene_6191_tx_27 1 - 257940 259441 . 2 576,865 0,637 -chrXII 259394 260518 HC_gene_6191_tx_29 1 - 259394 260518 . 1 1125 0 -chrXII 259469 260518 HC_gene_6191_tx_30 2 - 259469 260518 . 1 1050 0 -chrXII 259552 260518 HC_gene_6191_tx_31 41 - 259552 260518 . 1 967 0 -chrXII 259912 260885 MC_gene_5794_tx_1 1 + 259912 260885 . 1 974 0 -chrXII 260941 262873 HC_gene_5795_tx_1 143 + 260941 262873 . 1 1933 0 -chrXII 260941 262873 HC_gene_5795_tx_2 1 + 260941 262873 . 2 1055,831 0,1102 -chrXII 260941 262873 HC_gene_5795_tx_3 1 + 260941 262873 . 2 978,856 0,1077 -chrXII 260941 262873 HC_gene_5795_tx_4 1 + 260941 262873 . 2 1095,788 0,1145 -chrXII 260941 262873 HC_gene_5795_tx_5 1 + 260941 262873 . 2 304,1444 0,489 -chrXII 260941 262873 HC_gene_5795_tx_6 1 + 260941 262873 . 2 661,1225 0,708 -chrXII 260941 262979 HC_gene_5795_tx_7 8 + 260941 262979 . 1 2039 0 -chrXII 261105 262873 HC_gene_5795_tx_8 28 + 261105 262873 . 1 1769 0 -chrXII 261280 262873 HC_gene_5795_tx_9 12 + 261280 262873 . 1 1594 0 -chrXII 261442 262873 HC_gene_5795_tx_10 25 + 261442 262873 . 1 1432 0 -chrXII 261442 262873 HC_gene_5795_tx_11 1 + 261442 262873 . 2 566,714 0,718 -chrXII 261442 262979 HC_gene_5795_tx_12 2 + 261442 262979 . 1 1538 0 -chrXII 261570 262873 HC_gene_5795_tx_13 23 + 261570 262873 . 1 1304 0 -chrXII 261570 262979 HC_gene_5795_tx_14 3 + 261570 262979 . 1 1410 0 -chrXII 262777 263228 LC_gene_6192_tx_1 1 - 262777 263228 . 1 452 0 -chrXII 263169 264070 HC_gene_5796_tx_1 92 + 263169 264070 . 2 37,476 0,426 -chrXII 263169 264070 HC_gene_5796_tx_2 129 + 263169 264070 . 1 902 0 -chrXII 263710 264070 HC_gene_5796_tx_3 2134 + 263710 264070 . 1 361 0 -chrXII 263943 264829 LC_gene_6193_tx_1 1 - 263943 264829 . 1 887 0 -chrXII 264275 265603 HC_gene_5797_tx_1 1 + 264275 265603 . 1 1329 0 -chrXII 264275 265608 HC_gene_5797_tx_2 1 + 264275 265608 . 1 1334 0 -chrXII 264275 265615 HC_gene_5797_tx_3 1 + 264275 265615 . 1 1341 0 -chrXII 264275 265662 HC_gene_5797_tx_4 1 + 264275 265662 . 1 1388 0 -chrXII 264275 265680 HC_gene_5797_tx_5 1 + 264275 265680 . 1 1406 0 -chrXII 264275 265696 HC_gene_5797_tx_6 1 + 264275 265696 . 1 1422 0 -chrXII 264275 265700 HC_gene_5797_tx_7 1 + 264275 265700 . 1 1426 0 -chrXII 264275 265826 HC_gene_5797_tx_8 1 + 264275 265826 . 1 1552 0 -chrXII 264275 266397 HC_gene_5797_tx_9 3 + 264275 266397 . 1 2123 0 -chrXII 264899 265268 HC_gene_6194_tx_1 1 - 264899 265268 . 1 370 0 -chrXII 265442 265826 HC_gene_5797_tx_10 1 + 265442 265826 . 1 385 0 -chrXII 265442 266397 HC_gene_5797_tx_11 82 + 265442 266397 . 1 956 0 -chrXII 265442 266397 HC_gene_5797_tx_12 1 + 265442 266397 . 2 60,748 0,208 -chrXII 265636 266204 LC_gene_6195_tx_1 1 - 265636 266204 . 1 569 0 -chrXII 265804 266397 HC_gene_5797_tx_13 19 + 265804 266397 . 1 594 0 -chrXII 266267 266568 HC_gene_6196_tx_1 27 - 266267 266568 . 1 302 0 -chrXII 266267 266680 HC_gene_6196_tx_2 46 - 266267 266680 . 1 414 0 -chrXII 266267 266950 HC_gene_6196_tx_3 261 - 266267 266950 . 1 684 0 -chrXII 267118 267822 HC_gene_5798_tx_1 141 + 267118 267822 . 1 705 0 -chrXII 267118 267975 HC_gene_5798_tx_2 7 + 267118 267975 . 1 858 0 -chrXII 267370 267822 HC_gene_5798_tx_3 30 + 267370 267822 . 1 453 0 -chrXII 267719 268142 HC_gene_6197_tx_1 6 - 267719 268142 . 1 424 0 -chrXII 269507 270801 HC_gene_6198_tx_1 1 - 269507 270801 . 1 1295 0 -chrXII 270978 271574 HC_gene_5799_tx_1 103 + 270978 271574 . 1 597 0 -chrXII 271218 271574 HC_gene_5799_tx_2 14 + 271218 271574 . 1 357 0 -chrXII 271499 271939 HC_gene_6199_tx_1 15 - 271499 271939 . 1 441 0 -chrXII 271499 273555 HC_gene_6199_tx_2 3 - 271499 273555 . 1 2057 0 -chrXII 271499 273932 HC_gene_6199_tx_3 22 - 271499 273932 . 1 2434 0 -chrXII 271499 273932 HC_gene_6199_tx_4 1 - 271499 273932 . 2 1047,1316 0,1118 -chrXII 274044 275235 MC_gene_6200_tx_1 1 - 274044 275235 . 1 1192 0 -chrXII 274103 275371 HC_gene_5800_tx_1 1 + 274103 275371 . 1 1269 0 -chrXII 275233 275779 HC_gene_6201_tx_1 4 - 275233 275779 . 1 547 0 -chrXII 275233 278637 HC_gene_6201_tx_2 1 - 275233 278637 . 1 3405 0 -chrXII 275233 278656 HC_gene_6201_tx_3 11 - 275233 278656 . 1 3424 0 -chrXII 278841 281030 HC_gene_5801_tx_1 9 + 278841 281030 . 1 2190 0 -chrXII 280439 281030 HC_gene_5801_tx_2 7 + 280439 281030 . 1 592 0 -chrXII 280718 281030 HC_gene_5801_tx_3 7 + 280718 281030 . 1 313 0 -chrXII 280938 281706 HC_gene_6202_tx_1 60 - 280938 281706 . 1 769 0 -chrXII 280938 281706 HC_gene_6202_tx_2 1 - 280938 281706 . 2 490,95 0,674 -chrXII 280938 281706 HC_gene_6202_tx_3 1 - 280938 281706 . 2 523,201 0,568 -chrXII 281187 281551 HC_gene_5802_tx_1 1 + 281187 281551 . 1 365 0 -chrXII 281719 282212 HC_gene_6203_tx_1 40 - 281719 282212 . 1 494 0 -chrXII 281719 282323 HC_gene_6203_tx_2 1 - 281719 282323 . 1 605 0 -chrXII 281719 282471 HC_gene_6203_tx_3 1 - 281719 282471 . 1 753 0 -chrXII 281719 282479 HC_gene_6203_tx_4 183 - 281719 282479 . 1 761 0 -chrXII 281719 282479 HC_gene_6203_tx_5 1 - 281719 282479 . 2 269,448 0,313 -chrXII 281881 282212 HC_gene_6203_tx_6 2 - 281881 282212 . 1 332 0 -chrXII 281881 282323 HC_gene_6203_tx_10 1 - 281881 282323 . 1 443 0 -chrXII 281881 282479 HC_gene_6203_tx_11 18 - 281881 282479 . 1 599 0 -chrXII 281881 282793 HC_gene_6203_tx_16 1 - 281881 282793 . 1 913 0 -chrXII 281883 282212 HC_gene_6203_tx_7 1 - 281883 282212 . 1 330 0 -chrXII 281884 282479 HC_gene_6203_tx_12 3 - 281884 282479 . 1 596 0 -chrXII 281885 282479 HC_gene_6203_tx_13 1 - 281885 282479 . 1 595 0 -chrXII 281886 282212 HC_gene_6203_tx_8 1 - 281886 282212 . 1 327 0 -chrXII 281886 282479 HC_gene_6203_tx_14 2 - 281886 282479 . 1 594 0 -chrXII 281887 282212 HC_gene_6203_tx_9 2 - 281887 282212 . 1 326 0 -chrXII 281887 282479 HC_gene_6203_tx_15 38 - 281887 282479 . 1 593 0 -chrXII 282905 283713 HC_gene_5803_tx_1 4073 + 282905 283713 . 1 809 0 -chrXII 283047 283713 HC_gene_5803_tx_2 304 + 283047 283713 . 1 667 0 -chrXII 283176 283713 HC_gene_5803_tx_3 249 + 283176 283713 . 1 538 0 -chrXII 283296 283713 HC_gene_5803_tx_4 665 + 283296 283713 . 1 418 0 -chrXII 283363 283713 HC_gene_5803_tx_5 328 + 283363 283713 . 1 351 0 -chrXII 283440 283713 HC_gene_5803_tx_6 189 + 283440 283713 . 1 274 0 -chrXII 283844 285798 HC_gene_5804_tx_1 13 + 283844 285798 . 1 1955 0 -chrXII 285644 286445 HC_gene_6204_tx_1 48 - 285644 286445 . 1 802 0 -chrXII 285644 286445 HC_gene_6204_tx_2 1 - 285644 286445 . 2 522,225 0,577 -chrXII 285644 286613 HC_gene_6204_tx_3 12 - 285644 286613 . 1 970 0 -chrXII 285644 286613 HC_gene_6204_tx_4 11 - 285644 286613 . 2 824,57 0,913 -chrXII 285644 286613 HC_gene_6204_tx_5 1 - 285644 286613 . 2 797,57 0,913 -chrXII 286767 287828 HC_gene_5805_tx_1 75 + 286767 287828 . 1 1062 0 -chrXII 287038 287828 HC_gene_5805_tx_2 18 + 287038 287828 . 1 791 0 -chrXII 287461 287828 HC_gene_5805_tx_3 25 + 287461 287828 . 1 368 0 -chrXII 287707 288642 LC_gene_6205_tx_1 1 - 287707 288642 . 1 936 0 -chrXII 287984 289377 HC_gene_5806_tx_1 16 + 287984 289377 . 1 1394 0 -chrXII 287984 289377 HC_gene_5806_tx_2 1 + 287984 289377 . 2 31,1233 0,161 -chrXII 287984 289377 HC_gene_5806_tx_3 1 + 287984 289377 . 2 677,648 0,746 -chrXII 288183 289377 HC_gene_5806_tx_4 1 + 288183 289377 . 1 1195 0 -chrXII 288311 289377 HC_gene_5806_tx_5 1 + 288311 289377 . 1 1067 0 -chrXII 288524 289377 HC_gene_5806_tx_6 1 + 288524 289377 . 1 854 0 -chrXII 288760 289377 HC_gene_5806_tx_7 5 + 288760 289377 . 1 618 0 -chrXII 289340 289635 MC_gene_6206_tx_1 1 - 289340 289635 . 1 296 0 -chrXII 289426 290092 LC_gene_5807_tx_1 1 + 289426 290092 . 1 667 0 -chrXII 289965 291712 HC_gene_6207_tx_1 1 - 289965 291712 . 1 1748 0 -chrXII 290039 291712 HC_gene_6207_tx_2 1 - 290039 291712 . 2 800,806 0,868 -chrXII 290039 291712 HC_gene_6207_tx_3 1 - 290039 291712 . 1 1674 0 -chrXII 291745 292186 MC_gene_5808_tx_1 1 + 291745 292186 . 1 442 0 -chrXII 292042 293629 HC_gene_6208_tx_1 16 - 292042 293629 . 1 1588 0 -chrXII 292042 293629 HC_gene_6208_tx_2 1 - 292042 293629 . 2 1047,472 0,1116 -chrXII 293669 293933 MC_gene_5809_tx_1 1 + 293669 293933 . 1 265 0 -chrXII 293923 294753 HC_gene_6209_tx_1 34 - 293923 294753 . 1 831 0 -chrXII 293923 295623 HC_gene_6209_tx_2 12 - 293923 295623 . 1 1701 0 -chrXII 293923 295920 HC_gene_6209_tx_3 9 - 293923 295920 . 1 1998 0 -chrXII 293923 296015 HC_gene_6209_tx_4 11 - 293923 296015 . 1 2093 0 -chrXII 293923 296015 HC_gene_6209_tx_5 1 - 293923 296015 . 2 652,1358 0,735 -chrXII 293923 296183 HC_gene_6209_tx_6 76 - 293923 296183 . 1 2261 0 -chrXII 293923 296183 HC_gene_6209_tx_7 1 - 293923 296183 . 2 1710,215 0,2046 -chrXII 293923 296183 HC_gene_6209_tx_8 1 - 293923 296183 . 2 791,452 0,1809 -chrXII 293923 296183 HC_gene_6209_tx_9 1 - 293923 296183 . 2 576,88 0,2173 -chrXII 293923 296183 HC_gene_6209_tx_10 1 - 293923 296183 . 2 1549,75 0,2186 -chrXII 296494 300402 HC_gene_6210_tx_1 9 - 296494 300402 . 1 3909 0 -chrXII 296593 297276 LC_gene_5810_tx_1 1 + 296593 297276 . 1 684 0 -chrXII 299590 300402 HC_gene_6210_tx_2 1 - 299590 300402 . 1 813 0 -chrXII 300565 302009 HC_gene_6211_tx_1 26 - 300565 302009 . 1 1445 0 -chrXII 300974 302012 LC_gene_5811_tx_1 1 + 300974 302012 . 1 1039 0 -chrXII 302090 302893 LC_gene_6212_tx_1 1 - 302090 302893 . 1 804 0 -chrXII 302189 306829 HC_gene_5812_tx_1 1 + 302189 306829 . 1 4641 0 -chrXII 305834 306829 HC_gene_5812_tx_2 5 + 305834 306829 . 1 996 0 -chrXII 306771 307392 HC_gene_6213_tx_1 6 - 306771 307392 . 1 622 0 -chrXII 307669 308947 MC_gene_5813_tx_1 1 + 307669 308947 . 1 1279 0 -chrXII 308843 310029 MC_gene_6214_tx_1 1 - 308843 310029 . 1 1187 0 -chrXII 310274 312717 MC_gene_6215_tx_1 1 - 310274 312717 . 1 2444 0 -chrXII 314267 315894 HC_gene_6216_tx_1 3 - 314267 315894 . 1 1628 0 -chrXII 316074 318123 HC_gene_5814_tx_1 22 + 316074 318123 . 1 2050 0 -chrXII 317957 320536 MC_gene_5815_tx_1 1 + 317957 320536 . 1 2580 0 -chrXII 318039 318778 HC_gene_6217_tx_1 1 - 318039 318778 . 1 740 0 -chrXII 318039 319649 HC_gene_6217_tx_3 3 - 318039 319649 . 1 1611 0 -chrXII 318039 320320 HC_gene_6217_tx_5 1 - 318039 320320 . 2 1967,141 0,2141 -chrXII 318039 320320 HC_gene_6217_tx_6 17 - 318039 320320 . 1 2282 0 -chrXII 318163 318778 HC_gene_6217_tx_2 16 - 318163 318778 . 1 616 0 -chrXII 318163 319283 HC_gene_6217_tx_9 11 - 318163 319283 . 1 1121 0 -chrXII 318163 319283 HC_gene_6217_tx_10 1 - 318163 319283 . 2 950,105 0,1016 -chrXII 318163 319649 HC_gene_6217_tx_4 7 - 318163 319649 . 1 1487 0 -chrXII 318163 320320 HC_gene_6217_tx_7 117 - 318163 320320 . 1 2158 0 -chrXII 318163 320320 HC_gene_6217_tx_8 1 - 318163 320320 . 2 1273,830 0,1328 -chrXII 319091 320320 HC_gene_6217_tx_11 1 - 319091 320320 . 1 1230 0 -chrXII 320648 322183 HC_gene_5816_tx_1 1 + 320648 322183 . 2 964,516 0,1020 -chrXII 320648 322183 HC_gene_5816_tx_2 32 + 320648 322183 . 1 1536 0 -chrXII 320648 322183 HC_gene_5816_tx_3 1 + 320648 322183 . 2 964,523 0,1013 -chrXII 320648 322247 HC_gene_5816_tx_4 2 + 320648 322247 . 1 1600 0 -chrXII 320830 322183 HC_gene_5816_tx_5 2 + 320830 322183 . 1 1354 0 -chrXII 321070 322183 HC_gene_5816_tx_6 5 + 321070 322183 . 1 1114 0 -chrXII 322078 324761 MC_gene_6218_tx_1 1 - 322078 324761 . 1 2684 0 -chrXII 322275 323476 HC_gene_5817_tx_1 12 + 322275 323476 . 1 1202 0 -chrXII 322773 325200 MC_gene_6219_tx_1 1 - 322773 325200 . 1 2428 0 -chrXII 323526 326310 HC_gene_5818_tx_1 4 + 323526 326310 . 1 2785 0 -chrXII 325908 326310 HC_gene_5818_tx_2 2 + 325908 326310 . 1 403 0 -chrXII 326331 326675 HC_gene_6220_tx_1 21 - 326331 326675 . 1 345 0 -chrXII 326331 326889 HC_gene_6220_tx_2 5 - 326331 326889 . 1 559 0 -chrXII 326331 326942 HC_gene_6220_tx_3 18 - 326331 326942 . 1 612 0 -chrXII 326331 327087 HC_gene_6220_tx_4 3 - 326331 327087 . 1 757 0 -chrXII 326331 327471 HC_gene_6220_tx_7 53 - 326331 327471 . 2 928,72 0,1069 -chrXII 326331 327471 HC_gene_6220_tx_8 17 - 326331 327471 . 1 1141 0 -chrXII 326331 327471 HC_gene_6220_tx_9 1 - 326331 327471 . 2 928,76 0,1065 -chrXII 326331 327471 HC_gene_6220_tx_10 1 - 326331 327471 . 2 938,72 0,1069 -chrXII 326331 327471 HC_gene_6220_tx_11 1 - 326331 327471 . 3 242,312,72 0,616,1069 -chrXII 326454 327471 HC_gene_6220_tx_12 1 - 326454 327471 . 2 805,72 0,946 -chrXII 326455 327471 HC_gene_6220_tx_13 1 - 326455 327471 . 2 804,72 0,945 -chrXII 326455 327471 HC_gene_6220_tx_14 1 - 326455 327471 . 1 1017 0 -chrXII 326456 326889 HC_gene_6220_tx_27 1 - 326456 326889 . 1 434 0 -chrXII 326458 327471 HC_gene_6220_tx_15 1 - 326458 327471 . 2 801,72 0,942 -chrXII 326461 327471 HC_gene_6220_tx_16 1 - 326461 327471 . 2 798,72 0,939 -chrXII 326465 327471 HC_gene_6220_tx_17 1 - 326465 327471 . 2 794,72 0,935 -chrXII 326467 326675 HC_gene_6220_tx_30 2 - 326467 326675 . 1 209 0 -chrXII 326467 327471 HC_gene_6220_tx_18 1 - 326467 327471 . 2 792,72 0,933 -chrXII 326468 327471 HC_gene_6220_tx_19 1 - 326468 327471 . 1 1004 0 -chrXII 326471 327471 HC_gene_6220_tx_20 1 - 326471 327471 . 2 788,72 0,929 -chrXII 326474 327087 HC_gene_6220_tx_5 1 - 326474 327087 . 1 614 0 -chrXII 326475 326889 HC_gene_6220_tx_28 1 - 326475 326889 . 1 415 0 -chrXII 326476 327471 HC_gene_6220_tx_21 2 - 326476 327471 . 1 996 0 -chrXII 326477 326942 HC_gene_6220_tx_29 1 - 326477 326942 . 1 466 0 -chrXII 326477 327471 HC_gene_6220_tx_22 1 - 326477 327471 . 1 995 0 -chrXII 326478 327471 HC_gene_6220_tx_23 1 - 326478 327471 . 1 994 0 -chrXII 326502 327471 HC_gene_6220_tx_24 1 - 326502 327471 . 1 970 0 -chrXII 326503 327471 HC_gene_6220_tx_25 1 - 326503 327471 . 2 741,72 0,897 -chrXII 326504 327087 HC_gene_6220_tx_6 1 - 326504 327087 . 1 584 0 -chrXII 326509 327471 HC_gene_6220_tx_26 1 - 326509 327471 . 1 963 0 -chrXII 327609 328509 HC_gene_6221_tx_1 7 - 327609 328509 . 1 901 0 -chrXII 327609 328675 HC_gene_6221_tx_2 5 - 327609 328675 . 1 1067 0 -chrXII 327609 328918 HC_gene_6221_tx_3 6 - 327609 328918 . 1 1310 0 -chrXII 327609 329277 HC_gene_6221_tx_4 38 - 327609 329277 . 1 1669 0 -chrXII 329613 330081 HC_gene_6222_tx_1 1 - 329613 330081 . 1 469 0 -chrXII 329613 330134 HC_gene_6222_tx_2 7 - 329613 330134 . 1 522 0 -chrXII 329613 331156 HC_gene_6222_tx_3 2 - 329613 331156 . 1 1544 0 -chrXII 329613 332153 HC_gene_6222_tx_4 7 - 329613 332153 . 1 2541 0 -chrXII 329613 332153 HC_gene_6222_tx_5 1 - 329613 332153 . 2 994,1466 0,1075 -chrXII 329613 332153 HC_gene_6222_tx_6 1 - 329613 332153 . 2 328,2165 0,376 -chrXII 329686 332236 MC_gene_5819_tx_1 1 + 329686 332236 . 2 1064,1434 0,1117 -chrXII 332393 336148 HC_gene_5820_tx_1 2 + 332393 336148 . 1 3756 0 -chrXII 334540 336148 HC_gene_5820_tx_2 3 + 334540 336148 . 1 1609 0 -chrXII 335659 336148 HC_gene_5820_tx_3 6 + 335659 336148 . 1 490 0 -chrXII 335991 336727 HC_gene_6223_tx_1 1 - 335991 336727 . 1 737 0 -chrXII 335991 336896 HC_gene_6223_tx_2 1 - 335991 336896 . 1 906 0 -chrXII 336119 336727 HC_gene_6223_tx_3 6 - 336119 336727 . 1 609 0 -chrXII 336119 336896 HC_gene_6223_tx_4 3 - 336119 336896 . 1 778 0 -chrXII 336119 337343 HC_gene_6224_tx_1 44 - 336119 337343 . 1 1225 0 -chrXII 337398 339480 HC_gene_6225_tx_1 8 - 337398 339480 . 1 2083 0 -chrXII 337398 339480 HC_gene_6225_tx_2 1 - 337398 339480 . 2 738,1087 0,996 -chrXII 337398 339666 HC_gene_6225_tx_3 1 - 337398 339666 . 1 2269 0 -chrXII 338301 339710 MC_gene_5821_tx_1 1 + 338301 339710 . 1 1410 0 -chrXII 339621 340424 HC_gene_6226_tx_1 1 - 339621 340424 . 1 804 0 -chrXII 339621 340764 HC_gene_6226_tx_11 1 - 339621 340764 . 1 1144 0 -chrXII 339621 340951 HC_gene_6226_tx_12 5 - 339621 340951 . 1 1331 0 -chrXII 339622 340014 HC_gene_6226_tx_34 1 - 339622 340014 . 1 393 0 -chrXII 339622 340764 HC_gene_6226_tx_13 1 - 339622 340764 . 1 1143 0 -chrXII 339622 340951 HC_gene_6226_tx_14 3 - 339622 340951 . 1 1330 0 -chrXII 339623 340014 HC_gene_6226_tx_35 1 - 339623 340014 . 1 392 0 -chrXII 339624 340951 HC_gene_6226_tx_15 2 - 339624 340951 . 1 1328 0 -chrXII 339625 340951 HC_gene_6226_tx_16 1 - 339625 340951 . 1 1327 0 -chrXII 339627 340014 HC_gene_6226_tx_36 1 - 339627 340014 . 1 388 0 -chrXII 339627 340424 HC_gene_6226_tx_2 2 - 339627 340424 . 1 798 0 -chrXII 339627 340764 HC_gene_6226_tx_17 1 - 339627 340764 . 1 1138 0 -chrXII 339627 340951 HC_gene_6226_tx_18 4 - 339627 340951 . 1 1325 0 -chrXII 339628 340014 HC_gene_6226_tx_37 1 - 339628 340014 . 1 387 0 -chrXII 339628 340424 HC_gene_6226_tx_3 1 - 339628 340424 . 1 797 0 -chrXII 339628 340951 HC_gene_6226_tx_19 4 - 339628 340951 . 1 1324 0 -chrXII 339629 340951 HC_gene_6226_tx_20 2 - 339629 340951 . 1 1323 0 -chrXII 339631 340014 HC_gene_6226_tx_38 1 - 339631 340014 . 1 384 0 -chrXII 339631 340951 HC_gene_6226_tx_21 7 - 339631 340951 . 1 1321 0 -chrXII 339632 340014 HC_gene_6226_tx_39 1 - 339632 340014 . 1 383 0 -chrXII 339632 340951 HC_gene_6226_tx_22 1 - 339632 340951 . 1 1320 0 -chrXII 339633 340014 HC_gene_6226_tx_40 1 - 339633 340014 . 1 382 0 -chrXII 339633 340424 HC_gene_6226_tx_4 1 - 339633 340424 . 2 39,684 0,108 -chrXII 339633 340951 HC_gene_6226_tx_23 4 - 339633 340951 . 1 1319 0 -chrXII 339634 340014 HC_gene_6226_tx_41 5 - 339634 340014 . 1 381 0 -chrXII 339634 340424 HC_gene_6226_tx_5 2 - 339634 340424 . 1 791 0 -chrXII 339634 340764 HC_gene_6226_tx_24 2 - 339634 340764 . 1 1131 0 -chrXII 339634 340951 HC_gene_6226_tx_25 8 - 339634 340951 . 1 1318 0 -chrXII 339635 340424 HC_gene_6226_tx_6 1 - 339635 340424 . 1 790 0 -chrXII 339635 340951 HC_gene_6226_tx_26 1 - 339635 340951 . 1 1317 0 -chrXII 339636 340014 HC_gene_6226_tx_42 3 - 339636 340014 . 1 379 0 -chrXII 339636 340424 HC_gene_6226_tx_7 2 - 339636 340424 . 1 789 0 -chrXII 339636 340764 HC_gene_6226_tx_27 1 - 339636 340764 . 1 1129 0 -chrXII 339636 340951 HC_gene_6226_tx_28 6 - 339636 340951 . 1 1316 0 -chrXII 339637 340014 HC_gene_6226_tx_43 1 - 339637 340014 . 1 378 0 -chrXII 339637 340424 HC_gene_6226_tx_8 1 - 339637 340424 . 1 788 0 -chrXII 339637 340951 HC_gene_6226_tx_29 1 - 339637 340951 . 1 1315 0 -chrXII 339638 340951 HC_gene_6226_tx_30 1 - 339638 340951 . 1 1314 0 -chrXII 339639 340951 HC_gene_6226_tx_31 3 - 339639 340951 . 1 1313 0 -chrXII 339640 340014 HC_gene_6226_tx_44 1 - 339640 340014 . 1 375 0 -chrXII 339640 340424 HC_gene_6226_tx_9 1 - 339640 340424 . 1 785 0 -chrXII 339640 340951 HC_gene_6226_tx_32 1 - 339640 340951 . 1 1312 0 -chrXII 339641 340014 HC_gene_6226_tx_45 3 - 339641 340014 . 1 374 0 -chrXII 339641 340424 HC_gene_6226_tx_10 1 - 339641 340424 . 1 784 0 -chrXII 339641 340951 HC_gene_6226_tx_33 5 - 339641 340951 . 1 1311 0 -chrXII 339651 340981 MC_gene_5822_tx_1 1 + 339651 340981 . 1 1331 0 -chrXII 341234 341650 HC_gene_5823_tx_1 1 + 341234 341650 . 1 417 0 -chrXII 341249 341650 HC_gene_5823_tx_2 1 + 341249 341650 . 1 402 0 -chrXII 341264 341650 HC_gene_5823_tx_3 1 + 341264 341650 . 1 387 0 -chrXII 341298 341650 HC_gene_5823_tx_4 226 + 341298 341650 . 1 353 0 -chrXII 341300 341650 HC_gene_5823_tx_5 1 + 341300 341650 . 1 351 0 -chrXII 341304 341650 HC_gene_5823_tx_6 1 + 341304 341650 . 1 347 0 -chrXII 341375 341650 HC_gene_5823_tx_7 8 + 341375 341650 . 1 276 0 -chrXII 341383 341650 HC_gene_5823_tx_8 1 + 341383 341650 . 1 268 0 -chrXII 342320 342978 HC_gene_5824_tx_1 19 + 342320 342978 . 1 659 0 -chrXII 342320 343062 HC_gene_5824_tx_2 1 + 342320 343062 . 1 743 0 -chrXII 342429 342978 HC_gene_5824_tx_3 21 + 342429 342978 . 1 550 0 -chrXII 342598 342978 HC_gene_5824_tx_4 41 + 342598 342978 . 1 381 0 -chrXII 342598 343062 HC_gene_5824_tx_5 1 + 342598 343062 . 1 465 0 -chrXII 342828 343301 HC_gene_6227_tx_1 7 - 342828 343301 . 1 474 0 -chrXII 342828 343640 HC_gene_6227_tx_2 3 - 342828 343640 . 1 813 0 -chrXII 342828 343781 HC_gene_6227_tx_3 21 - 342828 343781 . 1 954 0 -chrXII 343923 345996 HC_gene_6228_tx_1 5 - 343923 345996 . 1 2074 0 -chrXII 346213 347042 HC_gene_5825_tx_1 2 + 346213 347042 . 1 830 0 -chrXII 346544 347042 HC_gene_5825_tx_2 86 + 346544 347042 . 1 499 0 -chrXII 346965 347361 HC_gene_6229_tx_1 13 - 346965 347361 . 1 397 0 -chrXII 346965 347876 HC_gene_6229_tx_2 6 - 346965 347876 . 1 912 0 -chrXII 346965 348220 HC_gene_6229_tx_3 31 - 346965 348220 . 1 1256 0 -chrXII 346965 348220 HC_gene_6229_tx_4 1 - 346965 348220 . 2 409,682 0,574 -chrXII 347234 348220 HC_gene_6229_tx_5 1 - 347234 348220 . 1 987 0 -chrXII 347320 348220 HC_gene_6229_tx_6 3 - 347320 348220 . 1 901 0 -chrXII 348825 349374 HC_gene_6230_tx_1 21 - 348825 349374 . 1 550 0 -chrXII 348825 349514 HC_gene_6230_tx_2 9 - 348825 349514 . 1 690 0 -chrXII 348825 350250 HC_gene_6230_tx_3 18 - 348825 350250 . 1 1426 0 -chrXII 348825 350306 HC_gene_6230_tx_4 2 - 348825 350306 . 1 1482 0 -chrXII 348825 350400 HC_gene_6230_tx_5 17 - 348825 350400 . 1 1576 0 -chrXII 348825 350477 HC_gene_6230_tx_6 1 - 348825 350477 . 2 1485,102 0,1551 -chrXII 348825 350477 HC_gene_6230_tx_7 8 - 348825 350477 . 1 1653 0 -chrXII 348825 350589 HC_gene_6230_tx_8 19 - 348825 350589 . 1 1765 0 -chrXII 348825 350589 HC_gene_6230_tx_9 1 - 348825 350589 . 2 41,1627 0,138 -chrXII 348825 350724 HC_gene_6230_tx_10 1 - 348825 350724 . 2 1682,142 0,1758 -chrXII 348825 350747 HC_gene_6230_tx_11 1 - 348825 350747 . 2 237,1548 0,375 -chrXII 348825 350747 HC_gene_6230_tx_12 7 - 348825 350747 . 1 1923 0 -chrXII 348825 350747 HC_gene_6230_tx_13 1 - 348825 350747 . 2 767,1095 0,828 -chrXII 348825 350747 HC_gene_6230_tx_14 1 - 348825 350747 . 2 813,1025 0,898 -chrXII 348825 350882 HC_gene_6230_tx_15 9 - 348825 350882 . 1 2058 0 -chrXII 348825 350882 HC_gene_6230_tx_16 1 - 348825 350882 . 2 906,1073 0,985 -chrXII 348825 351006 HC_gene_6230_tx_17 14 - 348825 351006 . 1 2182 0 -chrXII 348825 351006 HC_gene_6230_tx_18 1 - 348825 351006 . 2 1924,163 0,2019 -chrXII 348825 351006 HC_gene_6230_tx_19 1 - 348825 351006 . 2 1920,103 0,2079 -chrXII 348825 351132 HC_gene_6230_tx_20 14 - 348825 351132 . 1 2308 0 -chrXII 348825 351132 HC_gene_6230_tx_21 1 - 348825 351132 . 2 833,1323 0,985 -chrXII 348825 351279 HC_gene_6230_tx_22 6 - 348825 351279 . 1 2455 0 -chrXII 348825 351401 HC_gene_6230_tx_23 4 - 348825 351401 . 1 2577 0 -chrXII 348825 351558 HC_gene_6230_tx_24 9 - 348825 351558 . 1 2734 0 -chrXII 352593 355191 MC_gene_6231_tx_1 1 - 352593 355191 . 2 1092,1285 0,1314 -chrXII 353625 354396 MC_gene_6231_tx_2 1 - 353625 354396 . 1 772 0 -chrXII 354589 357042 MC_gene_6232_tx_1 1 - 354589 357042 . 1 2454 0 -chrXII 359358 363867 HC_gene_6233_tx_1 1 - 359358 363867 . 1 4510 0 -chrXII 360353 362016 HC_gene_6233_tx_2 1 - 360353 362016 . 1 1664 0 -chrXII 360353 363520 HC_gene_6233_tx_3 1 - 360353 363520 . 1 3168 0 -chrXII 360353 363867 HC_gene_6233_tx_4 1 - 360353 363867 . 1 3515 0 -chrXII 361854 363867 HC_gene_6233_tx_5 1 - 361854 363867 . 1 2014 0 -chrXII 363130 363867 HC_gene_6233_tx_6 1 - 363130 363867 . 1 738 0 -chrXII 364115 365157 HC_gene_5826_tx_1 12 + 364115 365157 . 1 1043 0 -chrXII 364115 365387 HC_gene_5826_tx_2 49 + 364115 365387 . 1 1273 0 -chrXII 364115 365387 HC_gene_5826_tx_3 1 + 364115 365387 . 2 716,459 0,814 -chrXII 364115 365799 HC_gene_5826_tx_4 3 + 364115 365799 . 1 1685 0 -chrXII 364508 365157 HC_gene_5826_tx_5 3 + 364508 365157 . 1 650 0 -chrXII 364508 365387 HC_gene_5826_tx_6 14 + 364508 365387 . 1 880 0 -chrXII 365688 366120 HC_gene_6234_tx_1 2 - 365688 366120 . 1 433 0 -chrXII 365816 366120 HC_gene_6234_tx_2 9 - 365816 366120 . 1 305 0 -chrXII 366495 368185 HC_gene_6235_tx_1 2 - 366495 368185 . 1 1691 0 -chrXII 366495 369339 HC_gene_6235_tx_2 2 - 366495 369339 . 1 2845 0 -chrXII 366495 369339 HC_gene_6235_tx_3 1 - 366495 369339 . 2 2101,349 0,2496 -chrXII 367251 368228 MC_gene_5827_tx_1 1 + 367251 368228 . 1 978 0 -chrXII 368743 369384 HC_gene_5828_tx_1 3893 + 368743 369384 . 1 642 0 -chrXII 369081 369384 HC_gene_5828_tx_2 464 + 369081 369384 . 1 304 0 -chrXII 369560 370062 HC_gene_6236_tx_1 1534 - 369560 370062 . 1 503 0 -chrXII 369560 370141 HC_gene_6236_tx_2 21565 - 369560 370141 . 1 582 0 -chrXII 369560 370141 HC_gene_6236_tx_3 48 - 369560 370141 . 2 114,428 0,154 -chrXII 370748 371530 HC_gene_5829_tx_1 2 + 370748 371530 . 1 783 0 -chrXII 370748 371647 HC_gene_5829_tx_2 8 + 370748 371647 . 1 900 0 -chrXII 371003 371530 HC_gene_5829_tx_3 1 + 371003 371530 . 1 528 0 -chrXII 371003 371647 HC_gene_5829_tx_4 1 + 371003 371647 . 1 645 0 -chrXII 371277 371530 HC_gene_5829_tx_5 5 + 371277 371530 . 1 254 0 -chrXII 371277 371647 HC_gene_5829_tx_6 17 + 371277 371647 . 1 371 0 -chrXII 371277 373090 HC_gene_5829_tx_7 23 + 371277 373090 . 1 1814 0 -chrXII 371481 372044 HC_gene_5829_tx_10 4 + 371481 372044 . 1 564 0 -chrXII 371481 373090 HC_gene_5829_tx_8 54 + 371481 373090 . 1 1610 0 -chrXII 371688 372044 HC_gene_5829_tx_11 1 + 371688 372044 . 1 357 0 -chrXII 371688 373090 HC_gene_5829_tx_9 14 + 371688 373090 . 1 1403 0 -chrXII 371849 372970 MC_gene_6237_tx_1 1 - 371849 372970 . 1 1122 0 -chrXII 372087 373090 HC_gene_5829_tx_12 27 + 372087 373090 . 1 1004 0 -chrXII 373390 374242 HC_gene_5830_tx_1 5 + 373390 374242 . 1 853 0 -chrXII 373786 374212 LC_gene_6238_tx_1 1 - 373786 374212 . 1 427 0 -chrXII 374549 375302 HC_gene_6239_tx_1 11 - 374549 375302 . 1 754 0 -chrXII 374549 375443 HC_gene_6239_tx_2 6 - 374549 375443 . 1 895 0 -chrXII 374549 375443 HC_gene_6239_tx_3 1 - 374549 375443 . 2 699,108 0,787 -chrXII 374549 375500 HC_gene_6239_tx_4 10 - 374549 375500 . 1 952 0 -chrXII 374549 375609 HC_gene_6239_tx_5 3 - 374549 375609 . 1 1061 0 -chrXII 374549 375609 HC_gene_6239_tx_6 1 - 374549 375609 . 2 800,100 0,961 -chrXII 374549 377304 HC_gene_6239_tx_7 5 - 374549 377304 . 1 2756 0 -chrXII 374549 377304 HC_gene_6239_tx_8 1 - 374549 377304 . 2 2364,309 0,2447 -chrXII 374751 375302 HC_gene_6239_tx_10 4 - 374751 375302 . 1 552 0 -chrXII 374751 375443 HC_gene_6239_tx_11 2 - 374751 375443 . 1 693 0 -chrXII 374751 375500 HC_gene_6239_tx_12 1 - 374751 375500 . 1 750 0 -chrXII 374751 377304 HC_gene_6239_tx_9 7 - 374751 377304 . 1 2554 0 -chrXII 377967 380611 HC_gene_5831_tx_1 1 + 377967 380611 . 2 236,2320 0,325 -chrXII 377967 380611 HC_gene_5831_tx_2 1 + 377967 380611 . 1 2645 0 -chrXII 377967 380611 HC_gene_5831_tx_3 1 + 377967 380611 . 2 358,1888 0,757 -chrXII 377967 380713 HC_gene_5831_tx_4 6 + 377967 380713 . 1 2747 0 -chrXII 378708 380611 HC_gene_5831_tx_5 2 + 378708 380611 . 1 1904 0 -chrXII 379254 380611 HC_gene_5831_tx_6 2 + 379254 380611 . 1 1358 0 -chrXII 379254 380713 HC_gene_5831_tx_7 3 + 379254 380713 . 1 1460 0 -chrXII 380854 382427 HC_gene_5832_tx_1 34 + 380854 382427 . 1 1574 0 -chrXII 380854 382427 HC_gene_5832_tx_2 1 + 380854 382427 . 2 845,677 0,897 -chrXII 380854 382427 HC_gene_5832_tx_3 1 + 380854 382427 . 2 949,578 0,996 -chrXII 380854 382427 HC_gene_5832_tx_4 1 + 380854 382427 . 2 847,586 0,988 -chrXII 380854 382583 HC_gene_5832_tx_5 4 + 380854 382583 . 1 1730 0 -chrXII 382285 382743 MC_gene_6240_tx_1 1 - 382285 382743 . 1 459 0 -chrXII 382285 384535 MC_gene_6240_tx_2 1 - 382285 384535 . 1 2251 0 -chrXII 382290 383010 MC_gene_6240_tx_5 1 - 382290 383010 . 1 721 0 -chrXII 382329 384396 MC_gene_6240_tx_3 1 - 382329 384396 . 1 2068 0 -chrXII 382333 384039 MC_gene_6240_tx_4 1 - 382333 384039 . 1 1707 0 -chrXII 384619 385112 HC_gene_6241_tx_1 16 - 384619 385112 . 1 494 0 -chrXII 384619 385444 HC_gene_6241_tx_2 107 - 384619 385444 . 1 826 0 -chrXII 385570 386266 HC_gene_5833_tx_1 50 + 385570 386266 . 1 697 0 -chrXII 385570 386340 HC_gene_5833_tx_2 7 + 385570 386340 . 1 771 0 -chrXII 385900 386266 HC_gene_5833_tx_3 6 + 385900 386266 . 1 367 0 -chrXII 385900 386340 HC_gene_5833_tx_4 1 + 385900 386340 . 1 441 0 -chrXII 386122 386432 HC_gene_6242_tx_1 8 - 386122 386432 . 1 311 0 -chrXII 386122 386840 HC_gene_6242_tx_2 13 - 386122 386840 . 1 719 0 -chrXII 386122 386963 HC_gene_6242_tx_3 14 - 386122 386963 . 1 842 0 -chrXII 386122 387409 HC_gene_6242_tx_4 9 - 386122 387409 . 1 1288 0 -chrXII 386122 387466 HC_gene_6242_tx_5 7 - 386122 387466 . 1 1345 0 -chrXII 386122 387651 HC_gene_6242_tx_6 5 - 386122 387651 . 1 1530 0 -chrXII 386122 387716 HC_gene_6242_tx_7 6 - 386122 387716 . 1 1595 0 -chrXII 386122 388016 HC_gene_6242_tx_8 12 - 386122 388016 . 1 1895 0 -chrXII 386122 388016 HC_gene_6242_tx_9 1 - 386122 388016 . 2 792,1035 0,860 -chrXII 386122 388016 HC_gene_6242_tx_10 1 - 386122 388016 . 2 762,732 0,1163 -chrXII 386122 388016 HC_gene_6242_tx_11 1 - 386122 388016 . 3 804,14,245 0,1312,1650 -chrXII 386122 388076 HC_gene_6242_tx_12 4 - 386122 388076 . 1 1955 0 -chrXII 386122 388132 HC_gene_6242_tx_13 5 - 386122 388132 . 1 2011 0 -chrXII 386122 388326 HC_gene_6242_tx_14 49 - 386122 388326 . 1 2205 0 -chrXII 386122 388326 HC_gene_6242_tx_15 1 - 386122 388326 . 2 914,1139 0,1066 -chrXII 386122 388618 HC_gene_6242_tx_16 1 - 386122 388618 . 2 1455,930 0,1567 -chrXII 386122 388618 HC_gene_6242_tx_17 1 - 386122 388618 . 1 2497 0 -chrXII 386230 387409 HC_gene_6242_tx_18 1 - 386230 387409 . 1 1180 0 -chrXII 386230 387466 HC_gene_6242_tx_19 1 - 386230 387466 . 1 1237 0 -chrXII 386230 387716 HC_gene_6242_tx_20 1 - 386230 387716 . 1 1487 0 -chrXII 386230 388326 HC_gene_6242_tx_21 5 - 386230 388326 . 1 2097 0 -chrXII 386331 386840 HC_gene_6242_tx_29 2 - 386331 386840 . 1 510 0 -chrXII 386331 386963 HC_gene_6242_tx_30 5 - 386331 386963 . 1 633 0 -chrXII 386331 387466 HC_gene_6242_tx_22 4 - 386331 387466 . 1 1136 0 -chrXII 386331 387651 HC_gene_6242_tx_23 1 - 386331 387651 . 1 1321 0 -chrXII 386331 388016 HC_gene_6242_tx_24 2 - 386331 388016 . 1 1686 0 -chrXII 386331 388132 HC_gene_6242_tx_25 4 - 386331 388132 . 1 1802 0 -chrXII 386331 388268 HC_gene_6242_tx_26 1 - 386331 388268 . 1 1938 0 -chrXII 386331 388326 HC_gene_6242_tx_27 17 - 386331 388326 . 1 1996 0 -chrXII 386331 388618 HC_gene_6242_tx_28 1 - 386331 388618 . 1 2288 0 -chrXII 387350 387716 HC_gene_6242_tx_31 1 - 387350 387716 . 1 367 0 -chrXII 387350 388076 HC_gene_6242_tx_32 1 - 387350 388076 . 1 727 0 -chrXII 387350 388326 HC_gene_6242_tx_33 3 - 387350 388326 . 1 977 0 -chrXII 387845 388452 HC_gene_5834_tx_1 1 + 387845 388452 . 1 608 0 -chrXII 387845 388752 HC_gene_5834_tx_2 1 + 387845 388752 . 1 908 0 -chrXII 388160 388752 HC_gene_5834_tx_3 3 + 388160 388752 . 1 593 0 -chrXII 388182 388618 HC_gene_6242_tx_34 29 - 388182 388618 . 1 437 0 -chrXII 388182 389079 HC_gene_6242_tx_35 2 - 388182 389079 . 1 898 0 -chrXII 388182 389474 HC_gene_6242_tx_36 1 - 388182 389474 . 1 1293 0 -chrXII 388182 390297 HC_gene_6242_tx_37 1 - 388182 390297 . 2 1428,580 0,1536 -chrXII 388182 390297 HC_gene_6242_tx_38 8 - 388182 390297 . 1 2116 0 -chrXII 388477 388752 HC_gene_5834_tx_4 1 + 388477 388752 . 1 276 0 -chrXII 388579 388752 HC_gene_5834_tx_5 2 + 388579 388752 . 1 174 0 -chrXII 388579 390453 HC_gene_5834_tx_6 1 + 388579 390453 . 1 1875 0 -chrXII 388589 389079 HC_gene_6242_tx_42 5 - 388589 389079 . 1 491 0 -chrXII 388589 389474 HC_gene_6242_tx_43 1 - 388589 389474 . 1 886 0 -chrXII 388589 390289 HC_gene_6242_tx_39 2 - 388589 390289 . 1 1701 0 -chrXII 388589 390297 HC_gene_6242_tx_40 20 - 388589 390297 . 1 1709 0 -chrXII 388589 390297 HC_gene_6242_tx_41 1 - 388589 390297 . 2 869,311 0,1398 -chrXII 388771 390453 HC_gene_5834_tx_7 2 + 388771 390453 . 1 1683 0 -chrXII 388912 390453 HC_gene_5834_tx_8 7 + 388912 390453 . 1 1542 0 -chrXII 389154 390340 HC_gene_5834_tx_9 2 + 389154 390340 . 1 1187 0 -chrXII 389154 390453 HC_gene_5834_tx_10 6 + 389154 390453 . 1 1300 0 -chrXII 389277 390340 HC_gene_5834_tx_11 1 + 389277 390340 . 1 1064 0 -chrXII 389277 390453 HC_gene_5834_tx_12 1 + 389277 390453 . 1 1177 0 -chrXII 389902 390453 HC_gene_5834_tx_13 6 + 389902 390453 . 1 552 0 -chrXII 390217 390614 HC_gene_6243_tx_1 1 - 390217 390614 . 1 398 0 -chrXII 390217 391714 HC_gene_6243_tx_2 2 - 390217 391714 . 1 1498 0 -chrXII 390329 391714 HC_gene_6243_tx_3 3 - 390329 391714 . 1 1386 0 -chrXII 390606 391320 MC_gene_5835_tx_1 1 + 390606 391320 . 1 715 0 -chrXII 390898 391442 MC_gene_5836_tx_1 1 + 390898 391442 . 1 545 0 -chrXII 391846 394471 HC_gene_5837_tx_1 1 + 391846 394471 . 1 2626 0 -chrXII 394533 395600 HC_gene_6244_tx_1 7 - 394533 395600 . 1 1068 0 -chrXII 394691 395600 HC_gene_6244_tx_2 53 - 394691 395600 . 1 910 0 -chrXII 395542 396649 MC_gene_6245_tx_1 1 - 395542 396649 . 1 1108 0 -chrXII 395815 396693 HC_gene_5838_tx_1 7 + 395815 396693 . 1 879 0 -chrXII 396602 398390 HC_gene_6246_tx_1 1 - 396602 398390 . 1 1789 0 -chrXII 396878 398390 HC_gene_6246_tx_2 3 - 396878 398390 . 1 1513 0 -chrXII 398504 399627 HC_gene_5839_tx_1 1 + 398504 399627 . 2 29,1001 0,123 -chrXII 398504 399627 HC_gene_5839_tx_2 1 + 398504 399627 . 1 1124 0 -chrXII 398572 399627 HC_gene_5839_tx_3 5 + 398572 399627 . 1 1056 0 -chrXII 398915 399410 MC_gene_6247_tx_1 1 - 398915 399410 . 1 496 0 -chrXII 399632 402509 HC_gene_5840_tx_1 3 + 399632 402509 . 1 2878 0 -chrXII 399632 402509 HC_gene_5840_tx_2 1 + 399632 402509 . 2 931,1866 0,1012 -chrXII 399632 402509 HC_gene_5840_tx_3 1 + 399632 402509 . 2 1592,1222 0,1656 -chrXII 399632 402602 HC_gene_5840_tx_4 23 + 399632 402602 . 1 2971 0 -chrXII 399632 402602 HC_gene_5840_tx_5 1 + 399632 402602 . 2 1083,1532 0,1439 -chrXII 399632 402602 HC_gene_5840_tx_6 1 + 399632 402602 . 2 971,1864 0,1107 -chrXII 399632 402602 HC_gene_5840_tx_7 1 + 399632 402602 . 2 1660,1248 0,1723 -chrXII 399644 402602 HC_gene_5840_tx_8 1 + 399644 402602 . 2 1826,866 0,2093 -chrXII 399828 402602 HC_gene_5840_tx_9 3 + 399828 402602 . 1 2775 0 -chrXII 400374 402602 HC_gene_5840_tx_10 4 + 400374 402602 . 1 2229 0 -chrXII 401458 402509 HC_gene_5840_tx_11 2 + 401458 402509 . 1 1052 0 -chrXII 401458 402602 HC_gene_5840_tx_12 7 + 401458 402602 . 1 1145 0 -chrXII 401664 402509 HC_gene_5840_tx_13 1 + 401664 402509 . 1 846 0 -chrXII 401664 402602 HC_gene_5840_tx_14 13 + 401664 402602 . 1 939 0 -chrXII 402454 404170 HC_gene_6248_tx_1 21 - 402454 404170 . 1 1717 0 -chrXII 402719 404170 HC_gene_6248_tx_2 1 - 402719 404170 . 1 1452 0 -chrXII 402722 404170 HC_gene_6248_tx_3 3 - 402722 404170 . 1 1449 0 -chrXII 402723 404170 HC_gene_6248_tx_4 1 - 402723 404170 . 1 1448 0 -chrXII 402724 404170 HC_gene_6248_tx_5 7 - 402724 404170 . 1 1447 0 -chrXII 403652 404490 LC_gene_5841_tx_1 1 + 403652 404490 . 1 839 0 -chrXII 404437 407049 HC_gene_6249_tx_1 5 - 404437 407049 . 1 2613 0 -chrXII 404437 408217 HC_gene_6249_tx_2 1 - 404437 408217 . 2 741,2978 0,803 -chrXII 404437 408217 HC_gene_6249_tx_3 1 - 404437 408217 . 1 3781 0 -chrXII 406815 408217 HC_gene_6249_tx_4 1 - 406815 408217 . 1 1403 0 -chrXII 406914 408217 HC_gene_6249_tx_5 8 - 406914 408217 . 1 1304 0 -chrXII 407172 408217 HC_gene_6249_tx_6 3 - 407172 408217 . 1 1046 0 -chrXII 408414 410261 HC_gene_5842_tx_1 1 + 408414 410261 . 1 1848 0 -chrXII 408414 410265 HC_gene_5842_tx_2 1 + 408414 410265 . 1 1852 0 -chrXII 408414 410267 HC_gene_5842_tx_3 1 + 408414 410267 . 1 1854 0 -chrXII 408414 410658 HC_gene_5842_tx_4 1 + 408414 410658 . 2 1201,992 0,1253 -chrXII 408414 410658 HC_gene_5842_tx_5 4 + 408414 410658 . 1 2245 0 -chrXII 408414 412541 HC_gene_5842_tx_7 2 + 408414 412541 . 1 4128 0 -chrXII 408414 412541 HC_gene_5842_tx_8 1 + 408414 412541 . 2 1451,2641 0,1487 -chrXII 408638 410658 HC_gene_5842_tx_6 1 + 408638 410658 . 1 2021 0 -chrXII 409371 410265 HC_gene_5842_tx_9 1 + 409371 410265 . 1 895 0 -chrXII 409371 410658 HC_gene_5842_tx_10 2 + 409371 410658 . 1 1288 0 -chrXII 409906 410268 HC_gene_5842_tx_11 1 + 409906 410268 . 1 363 0 -chrXII 409906 412541 HC_gene_5842_tx_12 1 + 409906 412541 . 1 2636 0 -chrXII 410421 411146 MC_gene_6250_tx_1 1 - 410421 411146 . 1 726 0 -chrXII 412432 412761 HC_gene_6251_tx_1 3 - 412432 412761 . 1 330 0 -chrXII 412914 413419 MC_gene_6252_tx_1 1 - 412914 413419 . 1 506 0 -chrXII 413255 415683 HC_gene_5843_tx_1 4 + 413255 415683 . 1 2429 0 -chrXII 414413 415532 HC_gene_6253_tx_1 1 - 414413 415532 . 1 1120 0 -chrXII 414881 415532 HC_gene_6253_tx_2 2 - 414881 415532 . 1 652 0 -chrXII 415534 416700 HC_gene_6254_tx_1 1 - 415534 416700 . 1 1167 0 -chrXII 415545 416700 HC_gene_6254_tx_2 1 - 415545 416700 . 1 1156 0 -chrXII 415758 416461 MC_gene_5844_tx_1 1 + 415758 416461 . 1 704 0 -chrXII 416807 418083 MC_gene_6255_tx_1 1 - 416807 418083 . 1 1277 0 -chrXII 416998 418152 HC_gene_5845_tx_1 25 + 416998 418152 . 1 1155 0 -chrXII 417242 418152 HC_gene_5845_tx_2 2 + 417242 418152 . 1 911 0 -chrXII 418273 421457 HC_gene_5846_tx_1 12 + 418273 421457 . 1 3185 0 -chrXII 418273 421457 HC_gene_5846_tx_2 1 + 418273 421457 . 2 2370,767 0,2418 -chrXII 419515 421457 HC_gene_5846_tx_3 2 + 419515 421457 . 1 1943 0 -chrXII 419515 421457 HC_gene_5846_tx_4 1 + 419515 421457 . 2 147,1339 0,604 -chrXII 419669 421457 HC_gene_5846_tx_5 2 + 419669 421457 . 1 1789 0 -chrXII 419837 421457 HC_gene_5846_tx_6 3 + 419837 421457 . 1 1621 0 -chrXII 420018 421457 HC_gene_5846_tx_7 17 + 420018 421457 . 1 1440 0 -chrXII 420018 421457 HC_gene_5846_tx_8 1 + 420018 421457 . 2 672,670 0,770 -chrXII 420184 421457 HC_gene_5846_tx_9 27 + 420184 421457 . 1 1274 0 -chrXII 420415 421457 HC_gene_5846_tx_10 7 + 420415 421457 . 1 1043 0 -chrXII 420708 421457 HC_gene_5846_tx_11 20 + 420708 421457 . 1 750 0 -chrXII 420846 421457 HC_gene_5846_tx_12 8 + 420846 421457 . 1 612 0 -chrXII 421354 423496 HC_gene_6256_tx_1 4 - 421354 423496 . 1 2143 0 -chrXII 423366 423853 HC_gene_6257_tx_1 4 - 423366 423853 . 1 488 0 -chrXII 423465 423853 HC_gene_6258_tx_1 10 - 423465 423853 . 1 389 0 -chrXII 423465 423868 HC_gene_6258_tx_2 1 - 423465 423868 . 1 404 0 -chrXII 423668 425186 HC_gene_5847_tx_1 10 + 423668 425186 . 1 1519 0 -chrXII 424687 425186 HC_gene_5847_tx_2 46 + 424687 425186 . 1 500 0 -chrXII 425108 426065 MC_gene_6259_tx_1 1 - 425108 426065 . 1 958 0 -chrXII 425307 426762 MC_gene_5848_tx_1 1 + 425307 426762 . 1 1456 0 -chrXII 426680 427035 LC_gene_6260_tx_1 1 - 426680 427035 . 1 356 0 -chrXII 427286 429200 HC_gene_5849_tx_1 2 + 427286 429200 . 1 1915 0 -chrXII 427286 429454 HC_gene_5849_tx_2 1 + 427286 429454 . 1 2169 0 -chrXII 427286 429471 HC_gene_5849_tx_3 1 + 427286 429471 . 1 2186 0 -chrXII 427286 429472 HC_gene_5849_tx_4 1 + 427286 429472 . 1 2187 0 -chrXII 427286 429474 HC_gene_5849_tx_5 1 + 427286 429474 . 1 2189 0 -chrXII 427286 429484 HC_gene_5849_tx_6 1 + 427286 429484 . 2 1493,634 0,1565 -chrXII 427286 429484 HC_gene_5849_tx_7 1 + 427286 429484 . 1 2199 0 -chrXII 427286 429651 HC_gene_5849_tx_8 3 + 427286 429651 . 1 2366 0 -chrXII 427420 429651 HC_gene_5849_tx_9 1 + 427420 429651 . 1 2232 0 -chrXII 428907 429472 HC_gene_5849_tx_10 1 + 428907 429472 . 1 566 0 -chrXII 428907 429484 HC_gene_5849_tx_11 1 + 428907 429484 . 1 578 0 -chrXII 428907 429485 HC_gene_5849_tx_12 1 + 428907 429485 . 1 579 0 -chrXII 428907 429651 HC_gene_5849_tx_13 3 + 428907 429651 . 1 745 0 -chrXII 429341 432030 HC_gene_6261_tx_1 2 - 429341 432030 . 1 2690 0 -chrXII 429593 432030 HC_gene_6261_tx_2 4 - 429593 432030 . 1 2438 0 -chrXII 429593 432030 HC_gene_6261_tx_3 1 - 429593 432030 . 2 1924,164 0,2274 -chrXII 431437 432822 HC_gene_5850_tx_1 1 + 431437 432822 . 1 1386 0 -chrXII 432158 432822 HC_gene_5850_tx_2 66 + 432158 432822 . 1 665 0 -chrXII 432158 432822 HC_gene_5850_tx_3 1 + 432158 432822 . 2 111,440 0,225 -chrXII 432737 433768 HC_gene_6262_tx_1 73 - 432737 433768 . 1 1032 0 -chrXII 433709 434154 HC_gene_5851_tx_1 5 + 433709 434154 . 1 446 0 -chrXII 433869 434154 HC_gene_5851_tx_2 110 + 433869 434154 . 1 286 0 -chrXII 434049 434485 HC_gene_6263_tx_1 166 - 434049 434485 . 1 437 0 -chrXII 434610 436409 HC_gene_5852_tx_1 1 + 434610 436409 . 1 1800 0 -chrXII 437301 437536 HC_gene_5853_tx_1 14 + 437301 437536 . 1 236 0 -chrXII 437433 439877 HC_gene_6264_tx_1 2 - 437433 439877 . 1 2445 0 -chrXII 437615 438550 MC_gene_5854_tx_1 1 + 437615 438550 . 1 936 0 -chrXII 440230 441341 HC_gene_5855_tx_1 1 + 440230 441341 . 1 1112 0 -chrXII 440230 441510 HC_gene_5855_tx_2 7 + 440230 441510 . 1 1281 0 -chrXII 440418 441338 HC_gene_5855_tx_3 4 + 440418 441338 . 1 921 0 -chrXII 440418 441339 HC_gene_5855_tx_4 1 + 440418 441339 . 1 922 0 -chrXII 440418 441340 HC_gene_5855_tx_5 7 + 440418 441340 . 1 923 0 -chrXII 440418 441341 HC_gene_5855_tx_6 9 + 440418 441341 . 1 924 0 -chrXII 440418 441342 HC_gene_5855_tx_7 4 + 440418 441342 . 1 925 0 -chrXII 440418 441345 HC_gene_5855_tx_8 1 + 440418 441345 . 1 928 0 -chrXII 440418 441347 HC_gene_5855_tx_9 5 + 440418 441347 . 1 930 0 -chrXII 440418 441353 HC_gene_5855_tx_10 2 + 440418 441353 . 1 936 0 -chrXII 440418 441354 HC_gene_5855_tx_11 5 + 440418 441354 . 1 937 0 -chrXII 440418 441510 HC_gene_5855_tx_12 2411 + 440418 441510 . 1 1093 0 -chrXII 440418 441510 HC_gene_5855_tx_13 1 + 440418 441510 . 2 320,705 0,388 -chrXII 440418 441510 HC_gene_5855_tx_14 2 + 440418 441510 . 2 860,155 0,938 -chrXII 440418 441510 HC_gene_5855_tx_15 1 + 440418 441510 . 2 918,129 0,964 -chrXII 440418 441510 HC_gene_5855_tx_16 1 + 440418 441510 . 2 736,289 0,804 -chrXII 440418 441510 HC_gene_5855_tx_17 1 + 440418 441510 . 2 212,802 0,291 -chrXII 440418 441510 HC_gene_5855_tx_18 1 + 440418 441510 . 2 701,339 0,754 -chrXII 440418 441510 HC_gene_5855_tx_19 1 + 440418 441510 . 2 921,129 0,964 -chrXII 440418 441510 HC_gene_5855_tx_20 1 + 440418 441510 . 2 732,213 0,880 -chrXII 440418 441510 HC_gene_5855_tx_21 1 + 440418 441510 . 2 82,901 0,192 -chrXII 440418 441510 HC_gene_5855_tx_22 1 + 440418 441510 . 2 374,476 0,617 -chrXII 440418 441510 HC_gene_5855_tx_23 1 + 440418 441510 . 2 701,322 0,771 -chrXII 440418 441510 HC_gene_5855_tx_24 2 + 440418 441510 . 2 925,129 0,964 -chrXII 440418 441510 HC_gene_5855_tx_25 1 + 440418 441510 . 2 894,129 0,964 -chrXII 440418 441510 HC_gene_5855_tx_26 1 + 440418 441510 . 2 716,316 0,777 -chrXII 440418 441510 HC_gene_5855_tx_27 1 + 440418 441510 . 2 812,129 0,964 -chrXII 440418 441510 HC_gene_5855_tx_28 1 + 440418 441510 . 2 824,129 0,964 -chrXII 440418 441510 HC_gene_5855_tx_29 1 + 440418 441510 . 2 751,171 0,922 -chrXII 440418 441510 HC_gene_5855_tx_30 1 + 440418 441510 . 2 74,901 0,192 -chrXII 440418 441510 HC_gene_5855_tx_31 1 + 440418 441510 . 2 902,133 0,960 -chrXII 440418 441510 HC_gene_5855_tx_32 1 + 440418 441510 . 2 102,671 0,422 -chrXII 440418 441510 HC_gene_5855_tx_33 1 + 440418 441510 . 2 111,635 0,458 -chrXII 440418 441510 HC_gene_5855_tx_34 1 + 440418 441510 . 2 227,772 0,321 -chrXII 440418 441510 HC_gene_5855_tx_35 1 + 440418 441510 . 2 461,582 0,511 -chrXII 440418 441510 HC_gene_5855_tx_36 1 + 440418 441510 . 2 913,86 0,1007 -chrXII 440418 441510 HC_gene_5855_tx_37 1 + 440418 441510 . 2 701,348 0,745 -chrXII 440418 441510 HC_gene_5855_tx_38 1 + 440418 441510 . 2 278,772 0,321 -chrXII 440418 441510 HC_gene_5855_tx_39 1 + 440418 441510 . 2 866,155 0,938 -chrXII 440418 441510 HC_gene_5855_tx_40 1 + 440418 441510 . 2 812,171 0,922 -chrXII 440418 441510 HC_gene_5855_tx_41 1 + 440418 441510 . 2 701,342 0,751 -chrXII 440418 441510 HC_gene_5855_tx_42 1 + 440418 441510 . 3 377,111,426 0,482,667 -chrXII 440418 441510 HC_gene_5855_tx_43 1 + 440418 441510 . 2 278,436 0,657 -chrXII 440418 441510 HC_gene_5855_tx_44 1 + 440418 441510 . 2 695,171 0,922 -chrXII 440418 441510 HC_gene_5855_tx_45 1 + 440418 441510 . 2 735,129 0,964 -chrXII 440418 441510 HC_gene_5855_tx_46 1 + 440418 441510 . 2 261,582 0,511 -chrXII 440418 441510 HC_gene_5855_tx_47 1 + 440418 441510 . 2 278,762 0,331 -chrXII 440418 441510 HC_gene_5855_tx_48 1 + 440418 441510 . 2 803,220 0,873 -chrXII 440418 441510 HC_gene_5855_tx_49 1 + 440418 441510 . 2 791,155 0,938 -chrXII 440418 441510 HC_gene_5855_tx_50 1 + 440418 441510 . 2 925,69 0,1024 -chrXII 440418 441606 HC_gene_5855_tx_51 28 + 440418 441606 . 1 1189 0 -chrXII 440418 441606 HC_gene_5855_tx_52 1 + 440418 441606 . 2 461,678 0,511 -chrXII 440418 441606 HC_gene_5855_tx_53 1 + 440418 441606 . 2 695,435 0,754 -chrXII 441043 441341 HC_gene_5855_tx_54 1 + 441043 441341 . 1 299 0 -chrXII 441043 441342 HC_gene_5855_tx_55 3 + 441043 441342 . 1 300 0 -chrXII 441043 441343 HC_gene_5855_tx_56 1 + 441043 441343 . 1 301 0 -chrXII 441043 441510 HC_gene_5855_tx_57 244 + 441043 441510 . 1 468 0 -chrXII 441043 441606 HC_gene_5855_tx_58 2 + 441043 441606 . 1 564 0 -chrXII 441448 442739 HC_gene_6265_tx_1 4 - 441448 442739 . 1 1292 0 -chrXII 441659 442419 MC_gene_5856_tx_1 1 + 441659 442419 . 1 761 0 -chrXII 441754 442342 MC_gene_5856_tx_2 1 + 441754 442342 . 1 589 0 -chrXII 442870 444267 HC_gene_6266_tx_1 4 - 442870 444267 . 1 1398 0 -chrXII 442870 444849 HC_gene_6266_tx_2 29 - 442870 444849 . 1 1980 0 -chrXII 442870 445091 HC_gene_6266_tx_3 2 - 442870 445091 . 1 2222 0 -chrXII 444052 444999 LC_gene_5857_tx_1 1 + 444052 444999 . 1 948 0 -chrXII 444790 445091 HC_gene_6266_tx_4 6 - 444790 445091 . 1 302 0 -chrXII 445116 445738 HC_gene_6267_tx_1 1 - 445116 445738 . 1 623 0 -chrXII 445116 446696 HC_gene_6267_tx_2 1 - 445116 446696 . 1 1581 0 -chrXII 445261 445738 HC_gene_6267_tx_13 64 - 445261 445738 . 1 478 0 -chrXII 445261 445988 HC_gene_6267_tx_14 61 - 445261 445988 . 1 728 0 -chrXII 445261 446143 HC_gene_6267_tx_15 22 - 445261 446143 . 1 883 0 -chrXII 445261 446143 HC_gene_6267_tx_16 1 - 445261 446143 . 2 316,494 0,389 -chrXII 445261 446696 HC_gene_6267_tx_3 19 - 445261 446696 . 1 1436 0 -chrXII 445261 446841 HC_gene_6267_tx_4 10 - 445261 446841 . 1 1581 0 -chrXII 445261 446954 HC_gene_6267_tx_5 15 - 445261 446954 . 1 1694 0 -chrXII 445261 446954 HC_gene_6267_tx_6 1 - 445261 446954 . 2 1275,362 0,1332 -chrXII 445261 447077 HC_gene_6267_tx_7 8 - 445261 447077 . 1 1817 0 -chrXII 445261 447482 HC_gene_6267_tx_8 11 - 445261 447482 . 1 2222 0 -chrXII 445261 447644 HC_gene_6267_tx_9 152 - 445261 447644 . 1 2384 0 -chrXII 445261 447644 HC_gene_6267_tx_10 1 - 445261 447644 . 2 1031,409 0,1975 -chrXII 445261 447644 HC_gene_6267_tx_11 1 - 445261 447644 . 2 1055,1232 0,1152 -chrXII 445261 447644 HC_gene_6267_tx_12 1 - 445261 447644 . 2 1218,1052 0,1332 -chrXII 447561 448367 HC_gene_6268_tx_1 3 - 447561 448367 . 1 807 0 -chrXII 447899 448173 HC_gene_6268_tx_2 7 - 447899 448173 . 1 275 0 -chrXII 447899 448367 HC_gene_6268_tx_3 163 - 447899 448367 . 1 469 0 -chrXII 449017 449389 MC_gene_6269_tx_1 1 - 449017 449389 . 1 373 0 -chrXII 449093 449609 MC_gene_6270_tx_1 1 - 449093 449609 . 1 517 0 -chrXII 449737 450727 HC_gene_5858_tx_1 4 + 449737 450727 . 1 991 0 -chrXII 451267 451503 LC_gene_6271_tx_1 1 - 451267 451503 . 1 237 0 -chrXII 458671 459956 MC_gene_6272_tx_1 1 - 458671 459956 . 1 1286 0 -chrXII 459951 460291 HC_gene_5859_tx_1 2 + 459951 460291 . 1 341 0 -chrXII 459951 460427 HC_gene_5859_tx_2 5 + 459951 460427 . 1 477 0 -chrXII 460026 460427 HC_gene_5859_tx_3 2 + 460026 460427 . 1 402 0 -chrXII 460127 460680 MC_gene_6273_tx_1 1 - 460127 460680 . 1 554 0 -chrXII 460218 460654 MC_gene_6273_tx_2 1 - 460218 460654 . 1 437 0 -chrXII 460329 460427 HC_gene_5859_tx_4 2 + 460329 460427 . 1 99 0 -chrXII 460520 460842 MC_gene_5860_tx_1 1 + 460520 460842 . 1 323 0 -chrXII 460923 461657 MC_gene_6274_tx_1 1 - 460923 461657 . 1 735 0 -chrXII 463029 463956 MC_gene_6275_tx_1 1 - 463029 463956 . 1 928 0 -chrXII 464935 466869 MC_gene_6276_tx_1 1 - 464935 466869 . 1 1935 0 -chrXII 467945 469505 LC_gene_5861_tx_1 1 + 467945 469505 . 1 1561 0 -chrXII 468231 476857 LC_gene_6277_tx_1 1 - 468231 476857 . 3 699,82,898 0,5919,7729 -chrXII 489010 490613 MC_gene_5862_tx_1 1 + 489010 490613 . 1 1604 0 -chrXII 489754 490546 MC_gene_6278_tx_1 1 - 489754 490546 . 1 793 0 -chrXII 489796 490681 MC_gene_5863_tx_1 1 + 489796 490681 . 1 886 0 -chrXII 490884 491520 HC_gene_5864_tx_1 2 + 490884 491520 . 1 637 0 -chrXII 490884 491793 HC_gene_5864_tx_2 17 + 490884 491793 . 1 910 0 -chrXII 490884 492002 HC_gene_5864_tx_3 3 + 490884 492002 . 1 1119 0 -chrXII 490884 492690 HC_gene_5864_tx_4 3 + 490884 492690 . 1 1807 0 -chrXII 491019 491520 HC_gene_5864_tx_5 1 + 491019 491520 . 1 502 0 -chrXII 491073 491793 HC_gene_5864_tx_6 1 + 491073 491793 . 1 721 0 -chrXII 491718 492888 HC_gene_6279_tx_1 3 - 491718 492888 . 1 1171 0 -chrXII 491718 493151 HC_gene_6279_tx_2 2 - 491718 493151 . 1 1434 0 -chrXII 491718 493280 HC_gene_6279_tx_3 21 - 491718 493280 . 1 1563 0 -chrXII 491718 493280 HC_gene_6279_tx_4 1 - 491718 493280 . 2 568,930 0,633 -chrXII 493312 494210 MC_gene_6280_tx_1 1 - 493312 494210 . 1 899 0 -chrXII 493528 494491 HC_gene_5865_tx_1 14 + 493528 494491 . 1 964 0 -chrXII 493858 494491 HC_gene_5865_tx_2 11 + 493858 494491 . 1 634 0 -chrXII 494415 495030 HC_gene_6281_tx_1 6 - 494415 495030 . 1 616 0 -chrXII 494415 495251 HC_gene_6281_tx_2 35 - 494415 495251 . 1 837 0 -chrXII 495099 495458 MC_gene_5866_tx_1 1 + 495099 495458 . 1 360 0 -chrXII 495175 496582 HC_gene_6282_tx_1 1 - 495175 496582 . 1 1408 0 -chrXII 495175 498081 HC_gene_6282_tx_3 2 - 495175 498081 . 1 2907 0 -chrXII 495382 496582 HC_gene_6282_tx_2 4 - 495382 496582 . 1 1201 0 -chrXII 495382 498081 HC_gene_6282_tx_4 8 - 495382 498081 . 1 2700 0 -chrXII 495382 498081 HC_gene_6282_tx_5 1 - 495382 498081 . 2 623,1945 0,755 -chrXII 495382 498546 HC_gene_6282_tx_6 2 - 495382 498546 . 1 3165 0 -chrXII 498143 498546 HC_gene_6282_tx_7 6 - 498143 498546 . 1 404 0 -chrXII 498196 498546 HC_gene_6282_tx_8 1 - 498196 498546 . 1 351 0 -chrXII 498890 499467 HC_gene_5867_tx_1 9105 + 498890 499467 . 1 578 0 -chrXII 499175 499467 HC_gene_5867_tx_2 928 + 499175 499467 . 1 293 0 -chrXII 499449 500326 HC_gene_6283_tx_1 66 - 499449 500326 . 1 878 0 -chrXII 499449 500326 HC_gene_6283_tx_2 1 - 499449 500326 . 2 75,715 0,163 -chrXII 499449 500326 HC_gene_6283_tx_3 1 - 499449 500326 . 2 409,302 0,576 -chrXII 499449 500326 HC_gene_6283_tx_4 1 - 499449 500326 . 2 690,134 0,744 -chrXII 500360 500660 HC_gene_6284_tx_1 7 - 500360 500660 . 1 301 0 -chrXII 500360 500713 HC_gene_6284_tx_2 8 - 500360 500713 . 1 354 0 -chrXII 500360 500833 HC_gene_6284_tx_3 13 - 500360 500833 . 1 474 0 -chrXII 500360 501053 HC_gene_6284_tx_4 1 - 500360 501053 . 1 694 0 -chrXII 500360 501054 HC_gene_6284_tx_5 2 - 500360 501054 . 1 695 0 -chrXII 500360 501057 HC_gene_6284_tx_6 2 - 500360 501057 . 1 698 0 -chrXII 500360 501058 HC_gene_6284_tx_7 1 - 500360 501058 . 1 699 0 -chrXII 500360 501059 HC_gene_6284_tx_8 1 - 500360 501059 . 1 700 0 -chrXII 500360 501060 HC_gene_6284_tx_9 3 - 500360 501060 . 1 701 0 -chrXII 500360 501061 HC_gene_6284_tx_10 1 - 500360 501061 . 1 702 0 -chrXII 500360 501062 HC_gene_6284_tx_11 1 - 500360 501062 . 1 703 0 -chrXII 500360 501066 HC_gene_6284_tx_12 1 - 500360 501066 . 1 707 0 -chrXII 500360 501068 HC_gene_6284_tx_13 1 - 500360 501068 . 1 709 0 -chrXII 500360 501070 HC_gene_6284_tx_14 1 - 500360 501070 . 1 711 0 -chrXII 500360 501073 HC_gene_6284_tx_15 2 - 500360 501073 . 1 714 0 -chrXII 500360 501074 HC_gene_6284_tx_16 1 - 500360 501074 . 1 715 0 -chrXII 500360 501075 HC_gene_6284_tx_17 2 - 500360 501075 . 1 716 0 -chrXII 500360 501076 HC_gene_6284_tx_18 1 - 500360 501076 . 1 717 0 -chrXII 500360 501078 HC_gene_6284_tx_19 2 - 500360 501078 . 1 719 0 -chrXII 500360 501079 HC_gene_6284_tx_20 20 - 500360 501079 . 1 720 0 -chrXII 500360 501080 HC_gene_6284_tx_21 1 - 500360 501080 . 1 721 0 -chrXII 500360 501083 HC_gene_6284_tx_22 1 - 500360 501083 . 1 724 0 -chrXII 500360 501085 HC_gene_6284_tx_23 1 - 500360 501085 . 1 726 0 -chrXII 500360 501086 HC_gene_6284_tx_24 1 - 500360 501086 . 1 727 0 -chrXII 500360 501091 HC_gene_6284_tx_25 88 - 500360 501091 . 1 732 0 -chrXII 500360 501092 HC_gene_6284_tx_26 1 - 500360 501092 . 1 733 0 -chrXII 500605 501124 MC_gene_5868_tx_1 1 + 500605 501124 . 1 520 0 -chrXII 500707 501157 MC_gene_5869_tx_1 1 + 500707 501157 . 1 451 0 -chrXII 501186 501806 HC_gene_6285_tx_1 27 - 501186 501806 . 1 621 0 -chrXII 501186 501933 HC_gene_6285_tx_2 9 - 501186 501933 . 1 748 0 -chrXII 501186 501985 HC_gene_6285_tx_3 30 - 501186 501985 . 1 800 0 -chrXII 501186 502170 HC_gene_6285_tx_4 211 - 501186 502170 . 1 985 0 -chrXII 501302 504349 HC_gene_5870_tx_1 1 + 501302 504349 . 1 3048 0 -chrXII 502339 504355 HC_gene_5871_tx_1 1 + 502339 504355 . 1 2017 0 -chrXII 502339 504613 HC_gene_5871_tx_2 2 + 502339 504613 . 1 2275 0 -chrXII 502339 505929 HC_gene_5871_tx_3 1 + 502339 505929 . 1 3591 0 -chrXII 503744 504057 MC_gene_6286_tx_1 1 - 503744 504057 . 1 314 0 -chrXII 504392 504613 HC_gene_5871_tx_4 6 + 504392 504613 . 1 222 0 -chrXII 504392 505929 HC_gene_5871_tx_5 6 + 504392 505929 . 1 1538 0 -chrXII 504392 505929 HC_gene_5871_tx_6 1 + 504392 505929 . 2 810,654 0,884 -chrXII 504392 505929 HC_gene_5871_tx_7 1 + 504392 505929 . 2 791,657 0,881 -chrXII 504530 505929 HC_gene_5871_tx_8 1 + 504530 505929 . 1 1400 0 -chrXII 505364 505816 MC_gene_6287_tx_1 1 - 505364 505816 . 1 453 0 -chrXII 506115 507726 HC_gene_5872_tx_1 287 + 506115 507726 . 1 1612 0 -chrXII 506115 507726 HC_gene_5872_tx_2 1 + 506115 507726 . 2 475,934 0,678 -chrXII 506115 507726 HC_gene_5872_tx_3 1 + 506115 507726 . 2 377,971 0,641 -chrXII 506115 507726 HC_gene_5872_tx_4 1 + 506115 507726 . 2 507,856 0,756 -chrXII 506115 507726 HC_gene_5872_tx_5 1 + 506115 507726 . 2 826,736 0,876 -chrXII 506115 507726 HC_gene_5872_tx_6 1 + 506115 507726 . 2 674,480 0,1132 -chrXII 506115 507726 HC_gene_5872_tx_7 1 + 506115 507726 . 2 110,555 0,1057 -chrXII 506115 507726 HC_gene_5872_tx_8 1 + 506115 507726 . 2 569,983 0,629 -chrXII 506115 507726 HC_gene_5872_tx_9 1 + 506115 507726 . 2 842,714 0,898 -chrXII 506115 507726 HC_gene_5872_tx_10 1 + 506115 507726 . 2 839,714 0,898 -chrXII 506115 507726 HC_gene_5872_tx_11 1 + 506115 507726 . 2 905,659 0,953 -chrXII 506115 507726 HC_gene_5872_tx_12 1 + 506115 507726 . 2 344,1153 0,459 -chrXII 506115 507726 HC_gene_5872_tx_13 1 + 506115 507726 . 2 90,480 0,1132 -chrXII 506115 507726 HC_gene_5872_tx_14 1 + 506115 507726 . 2 947,589 0,1023 -chrXII 506115 507726 HC_gene_5872_tx_15 1 + 506115 507726 . 2 474,758 0,854 -chrXII 506115 507726 HC_gene_5872_tx_16 1 + 506115 507726 . 2 175,1374 0,238 -chrXII 506115 507726 HC_gene_5872_tx_17 1 + 506115 507726 . 2 692,795 0,817 -chrXII 506243 507726 HC_gene_5872_tx_18 40 + 506243 507726 . 1 1484 0 -chrXII 506243 507726 HC_gene_5872_tx_19 1 + 506243 507726 . 3 116,456,565 0,321,919 -chrXII 506243 507726 HC_gene_5872_tx_20 1 + 506243 507726 . 2 131,983 0,501 -chrXII 506686 507726 HC_gene_5872_tx_21 32 + 506686 507726 . 1 1041 0 -chrXII 506756 507726 HC_gene_5872_tx_22 30 + 506756 507726 . 1 971 0 -chrXII 506756 507726 HC_gene_5872_tx_23 1 + 506756 507726 . 2 727,208 0,763 -chrXII 506756 507726 HC_gene_5872_tx_24 1 + 506756 507726 . 2 181,393 0,578 -chrXII 506857 507726 HC_gene_5872_tx_25 57 + 506857 507726 . 1 870 0 -chrXII 506980 507726 HC_gene_5872_tx_26 33 + 506980 507726 . 1 747 0 -chrXII 507229 507726 HC_gene_5872_tx_27 233 + 507229 507726 . 1 498 0 -chrXII 507229 507726 HC_gene_5872_tx_28 1 + 507229 507726 . 2 79,379 0,119 -chrXII 507357 507726 HC_gene_5872_tx_29 80 + 507357 507726 . 1 370 0 -chrXII 507699 509683 HC_gene_6288_tx_1 2 - 507699 509683 . 1 1985 0 -chrXII 507699 509772 HC_gene_6288_tx_2 1 - 507699 509772 . 1 2074 0 -chrXII 507699 510761 HC_gene_6288_tx_3 1 - 507699 510761 . 1 3063 0 -chrXII 510351 511979 HC_gene_5873_tx_1 1 + 510351 511979 . 1 1629 0 -chrXII 510351 512326 HC_gene_5873_tx_2 1 + 510351 512326 . 1 1976 0 -chrXII 510351 513015 HC_gene_5873_tx_3 7 + 510351 513015 . 1 2665 0 -chrXII 510974 511852 LC_gene_6289_tx_1 1 - 510974 511852 . 1 879 0 -chrXII 511004 511979 HC_gene_5873_tx_4 4 + 511004 511979 . 1 976 0 -chrXII 511004 512326 HC_gene_5873_tx_5 4 + 511004 512326 . 1 1323 0 -chrXII 511004 513015 HC_gene_5873_tx_6 16 + 511004 513015 . 1 2012 0 -chrXII 511300 512326 HC_gene_5873_tx_8 1 + 511300 512326 . 1 1027 0 -chrXII 511300 513015 HC_gene_5873_tx_7 10 + 511300 513015 . 1 1716 0 -chrXII 512203 512326 HC_gene_5873_tx_9 1 + 512203 512326 . 1 124 0 -chrXII 512203 513015 HC_gene_5873_tx_10 5 + 512203 513015 . 1 813 0 -chrXII 512491 512920 LC_gene_6290_tx_1 1 - 512491 512920 . 1 430 0 -chrXII 513107 513590 HC_gene_6291_tx_1 23 - 513107 513590 . 1 484 0 -chrXII 513107 513676 HC_gene_6291_tx_2 6 - 513107 513676 . 1 570 0 -chrXII 513107 513754 HC_gene_6291_tx_3 4 - 513107 513754 . 1 648 0 -chrXII 513107 513847 HC_gene_6291_tx_4 99 - 513107 513847 . 1 741 0 -chrXII 513238 514080 LC_gene_5874_tx_1 1 + 513238 514080 . 1 843 0 -chrXII 514014 514279 HC_gene_6292_tx_1 30 - 514014 514279 . 1 266 0 -chrXII 514014 514363 HC_gene_6292_tx_2 154 - 514014 514363 . 1 350 0 -chrXII 514014 514503 HC_gene_6292_tx_3 37 - 514014 514503 . 1 490 0 -chrXII 514014 514779 HC_gene_6292_tx_4 858 - 514014 514779 . 1 766 0 -chrXII 514090 514974 HC_gene_5875_tx_1 5 + 514090 514974 . 1 885 0 -chrXII 514584 514974 HC_gene_5875_tx_2 3 + 514584 514974 . 1 391 0 -chrXII 515205 516572 HC_gene_5876_tx_1 2 + 515205 516572 . 1 1368 0 -chrXII 515205 516574 HC_gene_5876_tx_2 3 + 515205 516574 . 1 1370 0 -chrXII 515205 516575 HC_gene_5876_tx_3 3 + 515205 516575 . 1 1371 0 -chrXII 515205 516579 HC_gene_5876_tx_4 1 + 515205 516579 . 1 1375 0 -chrXII 515205 516682 HC_gene_5876_tx_5 462 + 515205 516682 . 1 1478 0 -chrXII 515205 516682 HC_gene_5876_tx_6 1 + 515205 516682 . 2 819,593 0,885 -chrXII 515205 516682 HC_gene_5876_tx_7 1 + 515205 516682 . 2 1127,305 0,1173 -chrXII 515205 516682 HC_gene_5876_tx_8 1 + 515205 516682 . 2 264,954 0,524 -chrXII 515205 516682 HC_gene_5876_tx_9 1 + 515205 516682 . 2 94,1169 0,309 -chrXII 515205 516682 HC_gene_5876_tx_10 1 + 515205 516682 . 2 539,669 0,809 -chrXII 515205 516682 HC_gene_5876_tx_11 1 + 515205 516682 . 2 1039,305 0,1173 -chrXII 515205 516682 HC_gene_5876_tx_12 1 + 515205 516682 . 2 646,734 0,744 -chrXII 515205 516682 HC_gene_5876_tx_13 1 + 515205 516682 . 2 303,599 0,879 -chrXII 515205 516682 HC_gene_5876_tx_14 1 + 515205 516682 . 2 930,486 0,992 -chrXII 515205 516682 HC_gene_5876_tx_15 1 + 515205 516682 . 2 182,1209 0,269 -chrXII 515218 516579 HC_gene_5876_tx_16 1 + 515218 516579 . 2 215,837 0,525 -chrXII 515428 516574 HC_gene_5876_tx_17 1 + 515428 516574 . 1 1147 0 -chrXII 515428 516682 HC_gene_5876_tx_18 24 + 515428 516682 . 1 1255 0 -chrXII 515514 516574 HC_gene_5876_tx_19 1 + 515514 516574 . 1 1061 0 -chrXII 515514 516682 HC_gene_5876_tx_20 28 + 515514 516682 . 1 1169 0 -chrXII 515598 516682 HC_gene_5876_tx_21 24 + 515598 516682 . 1 1085 0 -chrXII 515667 516574 HC_gene_5876_tx_22 1 + 515667 516574 . 1 908 0 -chrXII 515667 516579 HC_gene_5876_tx_23 1 + 515667 516579 . 1 913 0 -chrXII 515667 516682 HC_gene_5876_tx_24 44 + 515667 516682 . 1 1016 0 -chrXII 515747 516682 HC_gene_5876_tx_25 41 + 515747 516682 . 1 936 0 -chrXII 515747 516682 HC_gene_5876_tx_26 1 + 515747 516682 . 2 309,430 0,506 -chrXII 515978 516682 HC_gene_5876_tx_27 74 + 515978 516682 . 1 705 0 -chrXII 516105 516574 HC_gene_5876_tx_28 2 + 516105 516574 . 1 470 0 -chrXII 516105 516682 HC_gene_5876_tx_29 131 + 516105 516682 . 1 578 0 -chrXII 516197 516579 HC_gene_5876_tx_32 1 + 516197 516579 . 1 383 0 -chrXII 516197 516682 HC_gene_5876_tx_30 86 + 516197 516682 . 1 486 0 -chrXII 516197 516682 HC_gene_5876_tx_31 1 + 516197 516682 . 2 188,176 0,310 -chrXII 516573 517048 HC_gene_6293_tx_1 13 - 516573 517048 . 1 476 0 -chrXII 516573 517180 HC_gene_6293_tx_2 8 - 516573 517180 . 1 608 0 -chrXII 516573 517330 HC_gene_6293_tx_3 10 - 516573 517330 . 1 758 0 -chrXII 516573 517330 HC_gene_6293_tx_4 1 - 516573 517330 . 2 335,359 0,399 -chrXII 516573 517735 HC_gene_6293_tx_5 71 - 516573 517735 . 1 1163 0 -chrXII 516573 517735 HC_gene_6293_tx_6 1 - 516573 517735 . 2 429,676 0,487 -chrXII 516573 517735 HC_gene_6293_tx_7 1 - 516573 517735 . 2 566,520 0,643 -chrXII 516573 517735 HC_gene_6293_tx_8 1 - 516573 517735 . 2 777,289 0,874 -chrXII 516573 517741 HC_gene_6293_tx_9 1 - 516573 517741 . 2 381,712 0,457 -chrXII 517909 520473 HC_gene_5877_tx_1 16 + 517909 520473 . 1 2565 0 -chrXII 517909 520473 HC_gene_5877_tx_2 1 + 517909 520473 . 2 1409,1078 0,1487 -chrXII 517909 520473 HC_gene_5877_tx_3 1 + 517909 520473 . 2 1402,1102 0,1463 -chrXII 519563 520473 HC_gene_5877_tx_4 6 + 519563 520473 . 1 911 0 -chrXII 519971 520473 HC_gene_5877_tx_5 8 + 519971 520473 . 1 503 0 -chrXII 520386 522060 HC_gene_6294_tx_1 31 - 520386 522060 . 1 1675 0 -chrXII 520386 522060 HC_gene_6294_tx_2 1 - 520386 522060 . 2 731,832 0,843 -chrXII 522286 522896 LC_gene_6295_tx_1 1 - 522286 522896 . 1 611 0 -chrXII 522641 523406 HC_gene_5878_tx_1 114 + 522641 523406 . 1 766 0 -chrXII 522641 523406 HC_gene_5878_tx_2 63 + 522641 523406 . 2 29,378 0,388 -chrXII 523031 523406 HC_gene_5878_tx_3 4962 + 523031 523406 . 1 376 0 -chrXII 523575 524473 HC_gene_5879_tx_1 207 + 523575 524473 . 1 899 0 -chrXII 524642 528051 HC_gene_5880_tx_1 1 + 524642 528051 . 1 3410 0 -chrXII 524642 528051 HC_gene_5880_tx_2 1 + 524642 528051 . 3 938,1140,507 0,1063,2903 -chrXII 527653 528051 HC_gene_5880_tx_3 3 + 527653 528051 . 1 399 0 -chrXII 528230 530522 HC_gene_5881_tx_1 15 + 528230 530522 . 1 2293 0 -chrXII 528230 530610 HC_gene_5881_tx_2 5 + 528230 530610 . 1 2381 0 -chrXII 530698 532578 HC_gene_6296_tx_1 1 - 530698 532578 . 2 300,1485 0,396 -chrXII 530698 534469 HC_gene_6296_tx_2 5 - 530698 534469 . 1 3772 0 -chrXII 532433 534469 HC_gene_6296_tx_3 1 - 532433 534469 . 1 2037 0 -chrXII 534030 534711 MC_gene_5882_tx_1 1 + 534030 534711 . 1 682 0 -chrXII 534835 537100 HC_gene_5883_tx_1 18 + 534835 537100 . 1 2266 0 -chrXII 534835 537100 HC_gene_5883_tx_2 1 + 534835 537100 . 2 163,1951 0,315 -chrXII 535006 537100 HC_gene_5883_tx_3 6 + 535006 537100 . 1 2095 0 -chrXII 535113 536983 LC_gene_6297_tx_1 1 - 535113 536983 . 1 1871 0 -chrXII 535236 537100 HC_gene_5883_tx_4 8 + 535236 537100 . 1 1865 0 -chrXII 535436 537100 HC_gene_5883_tx_5 5 + 535436 537100 . 1 1665 0 -chrXII 537240 538508 HC_gene_5884_tx_1 18 + 537240 538508 . 1 1269 0 -chrXII 537240 538682 HC_gene_5884_tx_2 5 + 537240 538682 . 1 1443 0 -chrXII 538390 538955 HC_gene_6298_tx_1 1 - 538390 538955 . 1 566 0 -chrXII 538390 539282 HC_gene_6298_tx_2 4 - 538390 539282 . 1 893 0 -chrXII 538390 539407 HC_gene_6298_tx_3 1 - 538390 539407 . 1 1018 0 -chrXII 538390 539639 HC_gene_6298_tx_4 21 - 538390 539639 . 1 1250 0 -chrXII 538516 539282 HC_gene_6298_tx_5 1 - 538516 539282 . 1 767 0 -chrXII 538516 539407 HC_gene_6298_tx_6 1 - 538516 539407 . 1 892 0 -chrXII 538516 539639 HC_gene_6298_tx_7 1 - 538516 539639 . 1 1124 0 -chrXII 538521 539639 HC_gene_6298_tx_8 1 - 538521 539639 . 1 1119 0 -chrXII 538523 538955 HC_gene_6298_tx_89 1 - 538523 538955 . 1 433 0 -chrXII 538526 539639 HC_gene_6298_tx_9 1 - 538526 539639 . 1 1114 0 -chrXII 538530 539639 HC_gene_6298_tx_10 1 - 538530 539639 . 1 1110 0 -chrXII 538532 539639 HC_gene_6298_tx_11 2 - 538532 539639 . 1 1108 0 -chrXII 538535 538955 HC_gene_6298_tx_90 1 - 538535 538955 . 1 421 0 -chrXII 538535 539639 HC_gene_6298_tx_12 3 - 538535 539639 . 1 1105 0 -chrXII 538537 539639 HC_gene_6298_tx_13 1 - 538537 539639 . 1 1103 0 -chrXII 538542 539639 HC_gene_6298_tx_14 4 - 538542 539639 . 1 1098 0 -chrXII 538544 539282 HC_gene_6298_tx_15 1 - 538544 539282 . 1 739 0 -chrXII 538547 539282 HC_gene_6298_tx_16 1 - 538547 539282 . 1 736 0 -chrXII 538548 539639 HC_gene_6298_tx_17 1 - 538548 539639 . 1 1092 0 -chrXII 538549 539282 HC_gene_6298_tx_18 1 - 538549 539282 . 1 734 0 -chrXII 538549 539639 HC_gene_6298_tx_19 3 - 538549 539639 . 1 1091 0 -chrXII 538551 538955 HC_gene_6298_tx_91 9 - 538551 538955 . 1 405 0 -chrXII 538551 539282 HC_gene_6298_tx_20 7 - 538551 539282 . 1 732 0 -chrXII 538551 539407 HC_gene_6298_tx_21 2 - 538551 539407 . 1 857 0 -chrXII 538551 539581 HC_gene_6298_tx_22 1 - 538551 539581 . 2 303,644 0,387 -chrXII 538551 539639 HC_gene_6298_tx_23 34 - 538551 539639 . 1 1089 0 -chrXII 538552 539639 HC_gene_6298_tx_24 2 - 538552 539639 . 1 1088 0 -chrXII 538553 538955 HC_gene_6298_tx_92 2 - 538553 538955 . 1 403 0 -chrXII 538553 539282 HC_gene_6298_tx_25 1 - 538553 539282 . 1 730 0 -chrXII 538553 539639 HC_gene_6298_tx_26 1 - 538553 539639 . 1 1087 0 -chrXII 538554 538955 HC_gene_6298_tx_93 1 - 538554 538955 . 1 402 0 -chrXII 538554 539639 HC_gene_6298_tx_27 2 - 538554 539639 . 1 1086 0 -chrXII 538555 538955 HC_gene_6298_tx_94 2 - 538555 538955 . 1 401 0 -chrXII 538555 539282 HC_gene_6298_tx_28 1 - 538555 539282 . 1 728 0 -chrXII 538555 539407 HC_gene_6298_tx_29 1 - 538555 539407 . 1 853 0 -chrXII 538555 539639 HC_gene_6298_tx_30 10 - 538555 539639 . 1 1085 0 -chrXII 538556 538955 HC_gene_6298_tx_95 2 - 538556 538955 . 1 400 0 -chrXII 538556 539282 HC_gene_6298_tx_31 2 - 538556 539282 . 1 727 0 -chrXII 538556 539407 HC_gene_6298_tx_32 2 - 538556 539407 . 1 852 0 -chrXII 538556 539639 HC_gene_6298_tx_33 9 - 538556 539639 . 1 1084 0 -chrXII 538557 539639 HC_gene_6298_tx_34 1 - 538557 539639 . 1 1083 0 -chrXII 538559 539639 HC_gene_6298_tx_35 2 - 538559 539639 . 1 1081 0 -chrXII 538561 538955 HC_gene_6298_tx_96 2 - 538561 538955 . 1 395 0 -chrXII 538561 539282 HC_gene_6298_tx_36 7 - 538561 539282 . 1 722 0 -chrXII 538561 539407 HC_gene_6298_tx_37 3 - 538561 539407 . 1 847 0 -chrXII 538561 539639 HC_gene_6298_tx_38 28 - 538561 539639 . 1 1079 0 -chrXII 538561 539639 HC_gene_6298_tx_39 1 - 538561 539639 . 2 382,144 0,935 -chrXII 538562 538955 HC_gene_6298_tx_97 2 - 538562 538955 . 1 394 0 -chrXII 538562 539282 HC_gene_6298_tx_40 5 - 538562 539282 . 1 721 0 -chrXII 538562 539639 HC_gene_6298_tx_41 16 - 538562 539639 . 1 1078 0 -chrXII 538563 538955 HC_gene_6298_tx_98 3 - 538563 538955 . 1 393 0 -chrXII 538563 539282 HC_gene_6298_tx_42 4 - 538563 539282 . 1 720 0 -chrXII 538563 539639 HC_gene_6298_tx_43 18 - 538563 539639 . 1 1077 0 -chrXII 538564 539407 HC_gene_6298_tx_44 1 - 538564 539407 . 1 844 0 -chrXII 538564 539639 HC_gene_6298_tx_45 2 - 538564 539639 . 1 1076 0 -chrXII 538565 539282 HC_gene_6298_tx_46 1 - 538565 539282 . 1 718 0 -chrXII 538565 539639 HC_gene_6298_tx_47 1 - 538565 539639 . 1 1075 0 -chrXII 538566 539282 HC_gene_6298_tx_48 1 - 538566 539282 . 1 717 0 -chrXII 538566 539639 HC_gene_6298_tx_49 9 - 538566 539639 . 1 1074 0 -chrXII 538567 539639 HC_gene_6298_tx_50 3 - 538567 539639 . 1 1073 0 -chrXII 538568 538955 HC_gene_6298_tx_99 1 - 538568 538955 . 1 388 0 -chrXII 538568 539282 HC_gene_6298_tx_51 1 - 538568 539282 . 1 715 0 -chrXII 538568 539407 HC_gene_6298_tx_52 1 - 538568 539407 . 1 840 0 -chrXII 538568 539639 HC_gene_6298_tx_53 1 - 538568 539639 . 1 1072 0 -chrXII 538569 539407 HC_gene_6298_tx_54 1 - 538569 539407 . 1 839 0 -chrXII 538569 539639 HC_gene_6298_tx_55 5 - 538569 539639 . 1 1071 0 -chrXII 538570 539407 HC_gene_6298_tx_56 2 - 538570 539407 . 1 838 0 -chrXII 538571 539639 HC_gene_6298_tx_57 2 - 538571 539639 . 1 1069 0 -chrXII 538572 539407 HC_gene_6298_tx_58 2 - 538572 539407 . 1 836 0 -chrXII 538573 538955 HC_gene_6298_tx_100 1 - 538573 538955 . 1 383 0 -chrXII 538573 539282 HC_gene_6298_tx_59 1 - 538573 539282 . 1 710 0 -chrXII 538573 539407 HC_gene_6298_tx_60 1 - 538573 539407 . 1 835 0 -chrXII 538573 539639 HC_gene_6298_tx_61 7 - 538573 539639 . 1 1067 0 -chrXII 538575 538955 HC_gene_6298_tx_101 1 - 538575 538955 . 1 381 0 -chrXII 538575 539639 HC_gene_6298_tx_62 1 - 538575 539639 . 1 1065 0 -chrXII 538576 539639 HC_gene_6298_tx_63 1 - 538576 539639 . 2 529,453 0,611 -chrXII 538577 538955 HC_gene_6298_tx_102 2 - 538577 538955 . 1 379 0 -chrXII 538577 539282 HC_gene_6298_tx_64 2 - 538577 539282 . 1 706 0 -chrXII 538577 539639 HC_gene_6298_tx_65 10 - 538577 539639 . 1 1063 0 -chrXII 538578 539282 HC_gene_6298_tx_66 1 - 538578 539282 . 1 705 0 -chrXII 538578 539639 HC_gene_6298_tx_67 1 - 538578 539639 . 1 1062 0 -chrXII 538579 539282 HC_gene_6298_tx_68 1 - 538579 539282 . 1 704 0 -chrXII 538579 539407 HC_gene_6298_tx_69 2 - 538579 539407 . 1 829 0 -chrXII 538579 539639 HC_gene_6298_tx_70 8 - 538579 539639 . 1 1061 0 -chrXII 538580 538955 HC_gene_6298_tx_103 2 - 538580 538955 . 1 376 0 -chrXII 538580 539282 HC_gene_6298_tx_71 1 - 538580 539282 . 1 703 0 -chrXII 538580 539407 HC_gene_6298_tx_72 2 - 538580 539407 . 1 828 0 -chrXII 538580 539639 HC_gene_6298_tx_73 4 - 538580 539639 . 1 1060 0 -chrXII 538581 539639 HC_gene_6298_tx_74 4 - 538581 539639 . 1 1059 0 -chrXII 538582 539639 HC_gene_6298_tx_75 3 - 538582 539639 . 1 1058 0 -chrXII 538583 539639 HC_gene_6298_tx_76 1 - 538583 539639 . 1 1057 0 -chrXII 538585 539639 HC_gene_6298_tx_77 1 - 538585 539639 . 1 1055 0 -chrXII 538587 538955 HC_gene_6298_tx_104 1 - 538587 538955 . 1 369 0 -chrXII 538587 539639 HC_gene_6298_tx_78 2 - 538587 539639 . 1 1053 0 -chrXII 538588 538955 HC_gene_6298_tx_105 1 - 538588 538955 . 1 368 0 -chrXII 538588 539282 HC_gene_6298_tx_79 2 - 538588 539282 . 1 695 0 -chrXII 538588 539407 HC_gene_6298_tx_80 2 - 538588 539407 . 1 820 0 -chrXII 538588 539639 HC_gene_6298_tx_81 4 - 538588 539639 . 1 1052 0 -chrXII 538589 539639 HC_gene_6298_tx_82 1 - 538589 539639 . 1 1051 0 -chrXII 538591 539282 HC_gene_6298_tx_83 3 - 538591 539282 . 1 692 0 -chrXII 538591 539639 HC_gene_6298_tx_84 3 - 538591 539639 . 1 1049 0 -chrXII 538592 539639 HC_gene_6298_tx_85 1 - 538592 539639 . 1 1048 0 -chrXII 538593 538955 HC_gene_6298_tx_106 1 - 538593 538955 . 1 363 0 -chrXII 538593 539282 HC_gene_6298_tx_86 1 - 538593 539282 . 1 690 0 -chrXII 538594 539639 HC_gene_6298_tx_87 1 - 538594 539639 . 1 1046 0 -chrXII 538597 539407 HC_gene_6298_tx_88 1 - 538597 539407 . 1 811 0 -chrXII 539840 540158 HC_gene_6299_tx_1 15 - 539840 540158 . 1 319 0 -chrXII 539840 540341 HC_gene_6299_tx_2 29 - 539840 540341 . 1 502 0 -chrXII 539840 540557 HC_gene_6299_tx_3 43 - 539840 540557 . 1 718 0 -chrXII 540743 540996 HC_gene_6300_tx_1 9 - 540743 540996 . 1 254 0 -chrXII 540743 541089 HC_gene_6300_tx_2 68 - 540743 541089 . 1 347 0 -chrXII 540743 541389 HC_gene_6300_tx_3 4 - 540743 541389 . 1 647 0 -chrXII 540743 541594 HC_gene_6300_tx_4 175 - 540743 541594 . 1 852 0 -chrXII 540743 541779 HC_gene_6300_tx_5 12 - 540743 541779 . 1 1037 0 -chrXII 540779 541783 HC_gene_5885_tx_1 21 + 540779 541783 . 1 1005 0 -chrXII 540888 541089 HC_gene_6300_tx_7 2 - 540888 541089 . 1 202 0 -chrXII 540888 541594 HC_gene_6300_tx_6 5 - 540888 541594 . 1 707 0 -chrXII 541553 541594 HC_gene_6300_tx_8 1 - 541553 541594 . 1 42 0 -chrXII 541553 541779 HC_gene_6300_tx_9 7 - 541553 541779 . 1 227 0 -chrXII 541553 543326 HC_gene_6300_tx_10 8 - 541553 543326 . 1 1774 0 -chrXII 541624 541779 HC_gene_6300_tx_24 1 - 541624 541779 . 1 156 0 -chrXII 541624 542937 HC_gene_6300_tx_11 1 - 541624 542937 . 1 1314 0 -chrXII 541624 543239 HC_gene_6300_tx_12 1 - 541624 543239 . 1 1616 0 -chrXII 541624 543307 HC_gene_6300_tx_13 1 - 541624 543307 . 1 1684 0 -chrXII 541624 543308 HC_gene_6300_tx_14 1 - 541624 543308 . 1 1685 0 -chrXII 541624 543314 HC_gene_6300_tx_15 2 - 541624 543314 . 1 1691 0 -chrXII 541624 543326 HC_gene_6300_tx_16 13 - 541624 543326 . 1 1703 0 -chrXII 541866 542657 HC_gene_6300_tx_25 7 - 541866 542657 . 1 792 0 -chrXII 541866 542937 HC_gene_6300_tx_17 8 - 541866 542937 . 1 1072 0 -chrXII 541866 543302 HC_gene_6300_tx_18 1 - 541866 543302 . 1 1437 0 -chrXII 541866 543308 HC_gene_6300_tx_19 1 - 541866 543308 . 1 1443 0 -chrXII 541866 543309 HC_gene_6300_tx_20 1 - 541866 543309 . 1 1444 0 -chrXII 541866 543320 HC_gene_6300_tx_21 2 - 541866 543320 . 1 1455 0 -chrXII 541866 543324 HC_gene_6300_tx_22 1 - 541866 543324 . 1 1459 0 -chrXII 541866 543326 HC_gene_6300_tx_23 37 - 541866 543326 . 1 1461 0 -chrXII 542021 543289 LC_gene_5886_tx_1 1 + 542021 543289 . 1 1269 0 -chrXII 543479 543811 MC_gene_5887_tx_1 1 + 543479 543811 . 1 333 0 -chrXII 543893 545829 HC_gene_5888_tx_1 69 + 543893 545829 . 1 1937 0 -chrXII 543893 545829 HC_gene_5888_tx_2 1 + 543893 545829 . 2 1011,842 0,1095 -chrXII 543893 545829 HC_gene_5888_tx_3 1 + 543893 545829 . 2 622,1211 0,726 -chrXII 543893 545933 HC_gene_5888_tx_4 6 + 543893 545933 . 1 2041 0 -chrXII 544000 545829 HC_gene_5888_tx_5 8 + 544000 545829 . 1 1830 0 -chrXII 544000 545829 HC_gene_5888_tx_6 1 + 544000 545829 . 2 1088,708 0,1122 -chrXII 544000 545933 HC_gene_5888_tx_7 1 + 544000 545933 . 1 1934 0 -chrXII 544275 545829 HC_gene_5888_tx_8 10 + 544275 545829 . 1 1555 0 -chrXII 544275 545829 HC_gene_5888_tx_9 1 + 544275 545829 . 2 290,1183 0,372 -chrXII 544275 545829 HC_gene_5888_tx_10 1 + 544275 545829 . 2 365,1005 0,550 -chrXII 544275 545933 HC_gene_5888_tx_11 1 + 544275 545933 . 1 1659 0 -chrXII 544737 545829 HC_gene_5888_tx_12 19 + 544737 545829 . 1 1093 0 -chrXII 544737 545933 HC_gene_5888_tx_13 1 + 544737 545933 . 1 1197 0 -chrXII 545018 545829 HC_gene_5888_tx_14 17 + 545018 545829 . 1 812 0 -chrXII 545018 545933 HC_gene_5888_tx_15 2 + 545018 545933 . 1 916 0 -chrXII 545481 545829 HC_gene_5888_tx_16 31 + 545481 545829 . 1 349 0 -chrXII 545481 545933 HC_gene_5888_tx_17 2 + 545481 545933 . 1 453 0 -chrXII 546060 547799 HC_gene_5889_tx_1 355 + 546060 547799 . 1 1740 0 -chrXII 546060 547799 HC_gene_5889_tx_2 1 + 546060 547799 . 2 131,1387 0,353 -chrXII 546060 547799 HC_gene_5889_tx_3 1 + 546060 547799 . 2 1139,493 0,1247 -chrXII 546060 547799 HC_gene_5889_tx_4 1 + 546060 547799 . 2 929,731 0,1009 -chrXII 546060 547799 HC_gene_5889_tx_5 1 + 546060 547799 . 2 959,745 0,995 -chrXII 546060 547799 HC_gene_5889_tx_6 1 + 546060 547799 . 2 1013,672 0,1068 -chrXII 546060 547799 HC_gene_5889_tx_7 1 + 546060 547799 . 2 1594,72 0,1668 -chrXII 546060 547799 HC_gene_5889_tx_8 1 + 546060 547799 . 2 909,749 0,991 -chrXII 546060 547799 HC_gene_5889_tx_9 1 + 546060 547799 . 2 959,737 0,1003 -chrXII 546060 547799 HC_gene_5889_tx_10 1 + 546060 547799 . 2 664,929 0,811 -chrXII 546073 547799 HC_gene_5889_tx_11 1 + 546073 547799 . 2 820,830 0,897 -chrXII 546083 547799 HC_gene_5889_tx_12 1 + 546083 547799 . 3 801,701,92 0,873,1625 -chrXII 546311 547799 HC_gene_5889_tx_13 22 + 546311 547799 . 1 1489 0 -chrXII 546502 547799 HC_gene_5889_tx_14 41 + 546502 547799 . 1 1298 0 -chrXII 546502 547799 HC_gene_5889_tx_15 1 + 546502 547799 . 3 643,406,96 0,693,1202 -chrXII 546689 547799 HC_gene_5889_tx_16 49 + 546689 547799 . 1 1111 0 -chrXII 546875 547799 HC_gene_5889_tx_17 52 + 546875 547799 . 1 925 0 -chrXII 547215 547799 HC_gene_5889_tx_18 336 + 547215 547799 . 1 585 0 -chrXII 547215 547799 HC_gene_5889_tx_19 1 + 547215 547799 . 2 165,328 0,257 -chrXII 547215 547799 HC_gene_5889_tx_20 1 + 547215 547799 . 2 211,328 0,257 -chrXII 547215 547799 HC_gene_5889_tx_21 1 + 547215 547799 . 2 268,164 0,421 -chrXII 547215 547799 HC_gene_5889_tx_22 1 + 547215 547799 . 2 329,220 0,365 -chrXII 547215 547799 HC_gene_5889_tx_23 1 + 547215 547799 . 2 439,72 0,513 -chrXII 547723 548141 HC_gene_6301_tx_1 19 - 547723 548141 . 1 419 0 -chrXII 547723 548725 HC_gene_6301_tx_2 15 - 547723 548725 . 1 1003 0 -chrXII 547723 548814 HC_gene_6301_tx_3 12 - 547723 548814 . 2 955,51 0,1041 -chrXII 547723 548814 HC_gene_6301_tx_4 1 - 547723 548814 . 2 948,44 0,1048 -chrXII 547723 548814 HC_gene_6301_tx_5 4 - 547723 548814 . 1 1092 0 -chrXII 547723 548814 HC_gene_6301_tx_6 1 - 547723 548814 . 2 912,51 0,1041 -chrXII 547723 548814 HC_gene_6301_tx_7 1 - 547723 548814 . 3 652,208,51 0,747,1041 -chrXII 547723 548814 HC_gene_6301_tx_8 1 - 547723 548814 . 3 39,874,51 0,81,1041 -chrXII 547943 548732 LC_gene_5890_tx_1 1 + 547943 548732 . 1 790 0 -chrXII 548993 549486 HC_gene_5891_tx_1 237 + 548993 549486 . 1 494 0 -chrXII 549169 549486 HC_gene_5891_tx_2 20 + 549169 549486 . 1 318 0 -chrXII 549408 549946 HC_gene_6302_tx_1 25 - 549408 549946 . 1 539 0 -chrXII 549408 550341 HC_gene_6302_tx_2 54 - 549408 550341 . 1 934 0 -chrXII 549408 550341 HC_gene_6302_tx_3 1 - 549408 550341 . 2 57,826 0,108 -chrXII 549408 550341 HC_gene_6302_tx_4 1 - 549408 550341 . 2 634,223 0,711 -chrXII 549408 550341 HC_gene_6302_tx_5 1 - 549408 550341 . 2 408,463 0,471 -chrXII 550125 550611 HC_gene_5892_tx_1 2 + 550125 550611 . 1 487 0 -chrXII 550569 551337 HC_gene_6303_tx_1 14 - 550569 551337 . 1 769 0 -chrXII 550569 551505 HC_gene_6303_tx_2 9 - 550569 551505 . 1 937 0 -chrXII 550569 551848 HC_gene_6303_tx_3 8 - 550569 551848 . 1 1280 0 -chrXII 550569 552017 HC_gene_6303_tx_4 48 - 550569 552017 . 1 1449 0 -chrXII 550569 552017 HC_gene_6303_tx_5 1 - 550569 552017 . 2 414,937 0,512 -chrXII 552239 552756 HC_gene_5893_tx_1 183 + 552239 552756 . 1 518 0 -chrXII 552239 552756 HC_gene_5893_tx_2 1 + 552239 552756 . 2 382,89 0,429 -chrXII 552239 552756 HC_gene_5893_tx_3 1 + 552239 552756 . 2 323,50 0,468 -chrXII 552239 552756 HC_gene_5893_tx_4 1 + 552239 552756 . 2 402,58 0,460 -chrXII 552402 552756 HC_gene_5893_tx_5 7 + 552402 552756 . 1 355 0 -chrXII 552560 553718 MC_gene_6304_tx_1 1 - 552560 553718 . 1 1159 0 -chrXII 552646 553835 MC_gene_6304_tx_2 1 - 552646 553835 . 1 1190 0 -chrXII 553709 554205 MC_gene_6305_tx_1 1 - 553709 554205 . 1 497 0 -chrXII 554050 556511 HC_gene_5894_tx_1 3 + 554050 556511 . 1 2462 0 -chrXII 554437 556511 HC_gene_5894_tx_2 27 + 554437 556511 . 1 2075 0 -chrXII 554437 556511 HC_gene_5894_tx_3 1 + 554437 556511 . 2 333,1192 0,883 -chrXII 554437 556511 HC_gene_5894_tx_4 1 + 554437 556511 . 2 314,1600 0,475 -chrXII 554437 556511 HC_gene_5894_tx_5 1 + 554437 556511 . 2 501,1040 0,1035 -chrXII 554555 556511 HC_gene_5894_tx_6 3 + 554555 556511 . 1 1957 0 -chrXII 554777 556511 HC_gene_5894_tx_7 6 + 554777 556511 . 1 1735 0 -chrXII 554777 556511 HC_gene_5894_tx_8 1 + 554777 556511 . 2 1146,523 0,1212 -chrXII 554777 556511 HC_gene_5894_tx_9 1 + 554777 556511 . 2 709,949 0,786 -chrXII 555006 556511 HC_gene_5894_tx_10 8 + 555006 556511 . 1 1506 0 -chrXII 555217 556511 HC_gene_5894_tx_11 17 + 555217 556511 . 1 1295 0 -chrXII 555217 556511 HC_gene_5894_tx_12 1 + 555217 556511 . 2 131,1100 0,195 -chrXII 555297 556511 HC_gene_5894_tx_13 7 + 555297 556511 . 1 1215 0 -chrXII 555549 556511 HC_gene_5894_tx_14 12 + 555549 556511 . 1 963 0 -chrXII 555657 556511 HC_gene_5894_tx_15 19 + 555657 556511 . 1 855 0 -chrXII 555929 556511 HC_gene_5894_tx_16 33 + 555929 556511 . 1 583 0 -chrXII 556118 556511 HC_gene_5894_tx_17 13 + 556118 556511 . 1 394 0 -chrXII 556175 556511 HC_gene_5894_tx_18 22 + 556175 556511 . 1 337 0 -chrXII 556778 559343 HC_gene_5895_tx_1 1 + 556778 559343 . 2 1254,1265 0,1301 -chrXII 556778 559343 HC_gene_5895_tx_2 7 + 556778 559343 . 1 2566 0 -chrXII 556998 559343 HC_gene_5895_tx_3 1 + 556998 559343 . 1 2346 0 -chrXII 559458 560597 HC_gene_5896_tx_1 36 + 559458 560597 . 1 1140 0 -chrXII 559458 560747 HC_gene_5896_tx_2 177 + 559458 560747 . 1 1290 0 -chrXII 559458 560747 HC_gene_5896_tx_3 1 + 559458 560747 . 2 1130,108 0,1182 -chrXII 559458 560747 HC_gene_5896_tx_4 1 + 559458 560747 . 2 924,306 0,984 -chrXII 559458 560747 HC_gene_5896_tx_5 1 + 559458 560747 . 2 1054,124 0,1166 -chrXII 559723 560597 HC_gene_5896_tx_6 1 + 559723 560597 . 1 875 0 -chrXII 559723 560747 HC_gene_5896_tx_7 18 + 559723 560747 . 1 1025 0 -chrXII 559992 560597 HC_gene_5896_tx_8 2 + 559992 560597 . 1 606 0 -chrXII 559992 560747 HC_gene_5896_tx_9 28 + 559992 560747 . 1 756 0 -chrXII 560079 560747 HC_gene_5896_tx_10 17 + 560079 560747 . 1 669 0 -chrXII 560409 560597 HC_gene_5896_tx_11 2 + 560409 560597 . 1 189 0 -chrXII 560409 560747 HC_gene_5896_tx_12 31 + 560409 560747 . 1 339 0 -chrXII 560666 561757 HC_gene_6306_tx_1 110 - 560666 561757 . 1 1092 0 -chrXII 560880 561764 LC_gene_5897_tx_1 1 + 560880 561764 . 2 74,672 0,213 -chrXII 561949 563564 HC_gene_5898_tx_1 13 + 561949 563564 . 1 1616 0 -chrXII 561949 563564 HC_gene_5898_tx_2 1 + 561949 563564 . 2 845,668 0,948 -chrXII 561949 563564 HC_gene_5898_tx_3 1 + 561949 563564 . 2 736,785 0,831 -chrXII 561949 563564 HC_gene_5898_tx_4 1 + 561949 563564 . 2 732,724 0,892 -chrXII 561949 563564 HC_gene_5898_tx_5 1 + 561949 563564 . 2 1490,34 0,1582 -chrXII 563426 564310 HC_gene_6307_tx_1 5 - 563426 564310 . 1 885 0 -chrXII 563426 564582 HC_gene_6307_tx_2 8 - 563426 564582 . 2 1029,69 0,1088 -chrXII 563426 564582 HC_gene_6307_tx_3 9 - 563426 564582 . 1 1157 0 -chrXII 564090 566336 LC_gene_5899_tx_1 1 + 564090 566336 . 1 2247 0 -chrXII 564704 566297 HC_gene_6308_tx_1 25 - 564704 566297 . 1 1594 0 -chrXII 566461 567921 HC_gene_6309_tx_1 1 - 566461 567921 . 1 1461 0 -chrXII 568518 570657 HC_gene_5900_tx_1 1 + 568518 570657 . 1 2140 0 -chrXII 568518 570774 HC_gene_5900_tx_2 8 + 568518 570774 . 1 2257 0 -chrXII 568571 569970 MC_gene_6310_tx_1 1 - 568571 569970 . 1 1400 0 -chrXII 569107 569701 MC_gene_6310_tx_2 1 - 569107 569701 . 1 595 0 -chrXII 570179 570774 HC_gene_5900_tx_3 9 + 570179 570774 . 1 596 0 -chrXII 570317 570774 HC_gene_5900_tx_4 8 + 570317 570774 . 1 458 0 -chrXII 570641 571663 HC_gene_6311_tx_1 2 - 570641 571663 . 1 1023 0 -chrXII 570641 571895 HC_gene_6311_tx_2 18 - 570641 571895 . 1 1255 0 -chrXII 570641 571895 HC_gene_6311_tx_3 1 - 570641 571895 . 2 973,101 0,1154 -chrXII 570641 571895 HC_gene_6311_tx_4 1 - 570641 571895 . 2 508,99 0,1156 -chrXII 570847 572029 HC_gene_5901_tx_1 1 + 570847 572029 . 1 1183 0 -chrXII 572039 572599 HC_gene_6312_tx_1 27 - 572039 572599 . 1 561 0 -chrXII 572039 572692 HC_gene_6312_tx_2 51 - 572039 572692 . 1 654 0 -chrXII 572039 572815 HC_gene_6312_tx_3 34 - 572039 572815 . 1 777 0 -chrXII 572039 572962 HC_gene_6312_tx_4 49 - 572039 572962 . 1 924 0 -chrXII 572039 573037 HC_gene_6312_tx_5 17 - 572039 573037 . 1 999 0 -chrXII 572039 573231 HC_gene_6312_tx_6 352 - 572039 573231 . 1 1193 0 -chrXII 572555 573468 MC_gene_5902_tx_1 1 + 572555 573468 . 1 914 0 -chrXII 573180 573820 HC_gene_6313_tx_1 5 - 573180 573820 . 1 641 0 -chrXII 573409 573820 HC_gene_6313_tx_2 113 - 573409 573820 . 1 412 0 -chrXII 573977 576498 HC_gene_5903_tx_1 6 + 573977 576498 . 1 2522 0 -chrXII 573977 576748 HC_gene_5903_tx_2 3 + 573977 576748 . 1 2772 0 -chrXII 574544 576498 HC_gene_5903_tx_3 4 + 574544 576498 . 1 1955 0 -chrXII 576048 576498 HC_gene_5903_tx_4 3 + 576048 576498 . 1 451 0 -chrXII 576048 576748 HC_gene_5903_tx_5 1 + 576048 576748 . 1 701 0 -chrXII 576084 576377 LC_gene_6314_tx_1 1 - 576084 576377 . 1 294 0 -chrXII 576687 577963 HC_gene_5904_tx_1 87 + 576687 577963 . 1 1277 0 -chrXII 576687 577963 HC_gene_5904_tx_2 1 + 576687 577963 . 2 499,715 0,562 -chrXII 576687 577963 HC_gene_5904_tx_3 1 + 576687 577963 . 2 168,943 0,334 -chrXII 576906 577963 HC_gene_5904_tx_4 13 + 576906 577963 . 1 1058 0 -chrXII 577264 577963 HC_gene_5904_tx_5 12 + 577264 577963 . 1 700 0 -chrXII 577564 577963 HC_gene_5904_tx_6 18 + 577564 577963 . 1 400 0 -chrXII 578133 578426 HC_gene_6315_tx_1 16 - 578133 578426 . 1 294 0 -chrXII 578133 578652 HC_gene_6315_tx_2 20 - 578133 578652 . 1 520 0 -chrXII 578133 578891 HC_gene_6315_tx_3 26 - 578133 578891 . 1 759 0 -chrXII 578133 579046 HC_gene_6315_tx_4 131 - 578133 579046 . 1 914 0 -chrXII 578133 579046 HC_gene_6315_tx_5 1 - 578133 579046 . 2 60,746 0,168 -chrXII 578133 579046 HC_gene_6315_tx_6 1 - 578133 579046 . 2 430,280 0,634 -chrXII 578133 579046 HC_gene_6315_tx_7 1 - 578133 579046 . 2 583,146 0,768 -chrXII 578242 578426 HC_gene_6315_tx_10 1 - 578242 578426 . 1 185 0 -chrXII 578242 578652 HC_gene_6315_tx_11 2 - 578242 578652 . 1 411 0 -chrXII 578242 578891 HC_gene_6315_tx_8 2 - 578242 578891 . 1 650 0 -chrXII 578242 579046 HC_gene_6315_tx_9 19 - 578242 579046 . 1 805 0 -chrXII 579217 579907 HC_gene_6316_tx_1 16 - 579217 579907 . 1 691 0 -chrXII 579217 581791 HC_gene_6316_tx_2 40 - 579217 581791 . 1 2575 0 -chrXII 579217 581791 HC_gene_6316_tx_3 1 - 579217 581791 . 2 1112,1387 0,1188 -chrXII 582037 582998 HC_gene_6317_tx_1 9 - 582037 582998 . 1 962 0 -chrXII 582037 584956 HC_gene_6317_tx_2 3 - 582037 584956 . 1 2920 0 -chrXII 582037 585344 HC_gene_6317_tx_3 1 - 582037 585344 . 2 959,1760 0,1548 -chrXII 582037 585344 HC_gene_6317_tx_4 1 - 582037 585344 . 1 3308 0 -chrXII 582037 585803 HC_gene_6317_tx_5 15 - 582037 585803 . 1 3767 0 -chrXII 585575 586003 LC_gene_5905_tx_1 1 + 585575 586003 . 1 429 0 -chrXII 586173 587660 HC_gene_5906_tx_1 6 + 586173 587660 . 1 1488 0 -chrXII 586320 587660 HC_gene_5906_tx_2 52 + 586320 587660 . 1 1341 0 -chrXII 586320 587660 HC_gene_5906_tx_3 1 + 586320 587660 . 2 48,744 0,597 -chrXII 586320 587660 HC_gene_5906_tx_4 1 + 586320 587660 . 2 172,990 0,351 -chrXII 586431 587660 HC_gene_5906_tx_5 8 + 586431 587660 . 1 1230 0 -chrXII 587571 588133 HC_gene_6318_tx_1 19 - 587571 588133 . 1 563 0 -chrXII 587571 588336 HC_gene_6318_tx_2 12 - 587571 588336 . 1 766 0 -chrXII 587571 588589 HC_gene_6318_tx_4 16 - 587571 588589 . 1 1019 0 -chrXII 587571 588960 HC_gene_6318_tx_6 70 - 587571 588960 . 1 1390 0 -chrXII 587634 588336 HC_gene_6318_tx_3 4 - 587634 588336 . 1 703 0 -chrXII 587634 588589 HC_gene_6318_tx_5 2 - 587634 588589 . 1 956 0 -chrXII 587634 588960 HC_gene_6318_tx_7 26 - 587634 588960 . 1 1327 0 -chrXII 589317 590969 HC_gene_5907_tx_1 3 + 589317 590969 . 1 1653 0 -chrXII 589317 591112 HC_gene_5907_tx_2 24 + 589317 591112 . 1 1796 0 -chrXII 589317 591112 HC_gene_5907_tx_3 1 + 589317 591112 . 2 167,1472 0,324 -chrXII 590435 591252 HC_gene_6319_tx_1 5 - 590435 591252 . 1 818 0 -chrXII 590435 592234 HC_gene_6319_tx_2 2 - 590435 592234 . 1 1800 0 -chrXII 590435 592402 HC_gene_6319_tx_3 2 - 590435 592402 . 1 1968 0 -chrXII 590964 591252 HC_gene_6319_tx_4 2 - 590964 591252 . 1 289 0 -chrXII 590964 592234 HC_gene_6319_tx_5 1 - 590964 592234 . 1 1271 0 -chrXII 590964 592402 HC_gene_6319_tx_6 3 - 590964 592402 . 1 1439 0 -chrXII 591344 591747 HC_gene_5908_tx_1 15 + 591344 591747 . 1 404 0 -chrXII 591651 592234 HC_gene_6319_tx_7 1 - 591651 592234 . 1 584 0 -chrXII 591651 592402 HC_gene_6319_tx_8 11 - 591651 592402 . 1 752 0 -chrXII 591651 593191 HC_gene_6319_tx_9 1 - 591651 593191 . 1 1541 0 -chrXII 591848 592234 HC_gene_6319_tx_11 5 - 591848 592234 . 1 387 0 -chrXII 591848 592402 HC_gene_6319_tx_12 11 - 591848 592402 . 1 555 0 -chrXII 591848 593191 HC_gene_6319_tx_10 1 - 591848 593191 . 1 1344 0 -chrXII 591877 592560 LC_gene_5909_tx_1 1 + 591877 592560 . 2 106,502 0,182 -chrXII 592943 593439 MC_gene_5910_tx_1 1 + 592943 593439 . 1 497 0 -chrXII 595727 599038 MC_gene_5911_tx_1 1 + 595727 599038 . 1 3312 0 -chrXII 597041 599050 MC_gene_5912_tx_1 1 + 597041 599050 . 1 2010 0 -chrXII 599819 600242 HC_gene_6320_tx_1 7 - 599819 600242 . 1 424 0 -chrXII 599819 602397 HC_gene_6320_tx_2 1 - 599819 602397 . 1 2579 0 -chrXII 599819 602475 HC_gene_6320_tx_3 2 - 599819 602475 . 1 2657 0 -chrXII 599819 602667 HC_gene_6320_tx_4 10 - 599819 602667 . 1 2849 0 -chrXII 599971 602667 HC_gene_6320_tx_5 1 - 599971 602667 . 1 2697 0 -chrXII 602816 603089 MC_gene_5913_tx_1 1 + 602816 603089 . 1 274 0 -chrXII 603370 603782 HC_gene_6321_tx_1 9 - 603370 603782 . 1 413 0 -chrXII 603370 603782 HC_gene_6321_tx_2 1 - 603370 603782 . 2 232,127 0,286 -chrXII 603370 603869 HC_gene_6321_tx_3 3 - 603370 603869 . 1 500 0 -chrXII 603881 604206 HC_gene_5914_tx_1 23 + 603881 604206 . 1 326 0 -chrXII 604121 604609 HC_gene_6322_tx_1 29 - 604121 604609 . 1 489 0 -chrXII 604121 604779 HC_gene_6322_tx_2 62 - 604121 604779 . 1 659 0 -chrXII 604121 604865 HC_gene_6322_tx_3 35 - 604121 604865 . 1 745 0 -chrXII 604121 604996 HC_gene_6322_tx_4 337 - 604121 604996 . 1 876 0 -chrXII 604212 604657 LC_gene_5915_tx_1 1 + 604212 604657 . 1 446 0 -chrXII 605183 605390 MC_gene_6323_tx_1 1 - 605183 605390 . 1 208 0 -chrXII 605616 606936 HC_gene_6324_tx_1 9 - 605616 606936 . 1 1321 0 -chrXII 605616 607147 HC_gene_6324_tx_2 47 - 605616 607147 . 1 1532 0 -chrXII 605616 607147 HC_gene_6324_tx_3 1 - 605616 607147 . 2 1284,131 0,1401 -chrXII 607713 609159 MC_gene_5916_tx_1 1 + 607713 609159 . 1 1447 0 -chrXII 607928 609571 HC_gene_6325_tx_1 1 - 607928 609571 . 1 1644 0 -chrXII 608043 609571 HC_gene_6325_tx_2 3 - 608043 609571 . 1 1529 0 -chrXII 609717 612786 MC_gene_6326_tx_1 1 - 609717 612786 . 1 3070 0 -chrXII 610678 612273 MC_gene_5917_tx_1 1 + 610678 612273 . 1 1596 0 -chrXII 612231 614369 MC_gene_5918_tx_1 1 + 612231 614369 . 1 2139 0 -chrXII 613002 614364 MC_gene_5918_tx_2 1 + 613002 614364 . 1 1363 0 -chrXII 614267 614580 HC_gene_6327_tx_1 27 - 614267 614580 . 1 314 0 -chrXII 614681 616351 HC_gene_5919_tx_1 10 + 614681 616351 . 1 1671 0 -chrXII 615787 616351 HC_gene_5919_tx_2 7 + 615787 616351 . 1 565 0 -chrXII 616222 617334 HC_gene_6328_tx_1 22 - 616222 617334 . 1 1113 0 -chrXII 617499 620237 HC_gene_5920_tx_1 5 + 617499 620237 . 1 2739 0 -chrXII 617499 620320 HC_gene_5920_tx_2 3 + 617499 620320 . 1 2822 0 -chrXII 618367 620237 HC_gene_5920_tx_3 1 + 618367 620237 . 1 1871 0 -chrXII 618367 620320 HC_gene_5920_tx_4 2 + 618367 620320 . 1 1954 0 -chrXII 618604 619336 LC_gene_6329_tx_1 1 - 618604 619336 . 1 733 0 -chrXII 620165 623930 HC_gene_6330_tx_1 1 - 620165 623930 . 1 3766 0 -chrXII 620417 622912 HC_gene_5921_tx_1 32 + 620417 622912 . 1 2496 0 -chrXII 621672 622912 HC_gene_5921_tx_2 7 + 621672 622912 . 1 1241 0 -chrXII 621672 622912 HC_gene_5921_tx_3 1 + 621672 622912 . 2 217,858 0,383 -chrXII 622818 623573 HC_gene_6330_tx_2 3 - 622818 623573 . 1 756 0 -chrXII 622818 623930 HC_gene_6330_tx_3 16 - 622818 623930 . 1 1113 0 -chrXII 624124 625192 HC_gene_5922_tx_1 62 + 624124 625192 . 1 1069 0 -chrXII 624124 625192 HC_gene_5922_tx_2 1 + 624124 625192 . 2 277,527 0,542 -chrXII 624124 625263 HC_gene_5922_tx_3 1 + 624124 625263 . 1 1140 0 -chrXII 624124 625364 HC_gene_5922_tx_4 2 + 624124 625364 . 1 1241 0 -chrXII 625005 625804 HC_gene_6331_tx_1 4 - 625005 625804 . 1 800 0 -chrXII 625005 626004 HC_gene_6331_tx_2 2 - 625005 626004 . 1 1000 0 -chrXII 625005 626109 HC_gene_6331_tx_3 2 - 625005 626109 . 1 1105 0 -chrXII 625005 626350 HC_gene_6331_tx_4 11 - 625005 626350 . 1 1346 0 -chrXII 625005 626949 HC_gene_6331_tx_10 2 - 625005 626949 . 1 1945 0 -chrXII 625090 625597 HC_gene_6331_tx_12 40 - 625090 625597 . 1 508 0 -chrXII 625090 625804 HC_gene_6331_tx_5 28 - 625090 625804 . 1 715 0 -chrXII 625090 625909 HC_gene_6331_tx_6 46 - 625090 625909 . 1 820 0 -chrXII 625090 626004 HC_gene_6331_tx_7 17 - 625090 626004 . 1 915 0 -chrXII 625090 626109 HC_gene_6331_tx_8 41 - 625090 626109 . 1 1020 0 -chrXII 625090 626350 HC_gene_6331_tx_9 175 - 625090 626350 . 1 1261 0 -chrXII 625090 626949 HC_gene_6331_tx_11 18 - 625090 626949 . 1 1860 0 -chrXII 626517 628269 HC_gene_5923_tx_1 2 + 626517 628269 . 1 1753 0 -chrXII 627116 628269 HC_gene_5923_tx_2 27 + 627116 628269 . 1 1154 0 -chrXII 628602 629105 HC_gene_6332_tx_1 8 - 628602 629105 . 1 504 0 -chrXII 631638 632168 HC_gene_6333_tx_1 1 - 631638 632168 . 1 531 0 -chrXII 632884 633943 LC_gene_6334_tx_1 1 - 632884 633943 . 1 1060 0 -chrXII 633562 636229 HC_gene_5924_tx_1 2 + 633562 636229 . 1 2668 0 -chrXII 633673 636229 HC_gene_5924_tx_2 20 + 633673 636229 . 1 2557 0 -chrXII 633673 636229 HC_gene_5924_tx_3 1 + 633673 636229 . 2 1087,1381 0,1176 -chrXII 634034 636229 HC_gene_5924_tx_4 3 + 634034 636229 . 1 2196 0 -chrXII 634180 636229 HC_gene_5924_tx_5 26 + 634180 636229 . 1 2050 0 -chrXII 634180 636229 HC_gene_5924_tx_6 1 + 634180 636229 . 2 1068,888 0,1162 -chrXII 634180 636229 HC_gene_5924_tx_7 1 + 634180 636229 . 2 1207,745 0,1305 -chrXII 634180 636229 HC_gene_5924_tx_8 1 + 634180 636229 . 2 1231,525 0,1525 -chrXII 635714 636229 HC_gene_5924_tx_9 17 + 635714 636229 . 1 516 0 -chrXII 635897 636229 HC_gene_5924_tx_10 4 + 635897 636229 . 1 333 0 -chrXII 636118 636310 LC_gene_6335_tx_1 1 - 636118 636310 . 1 193 0 -chrXII 636740 640000 HC_gene_5925_tx_1 10 + 636740 640000 . 1 3261 0 -chrXII 636740 640001 HC_gene_5925_tx_2 6 + 636740 640001 . 1 3262 0 -chrXII 636740 640001 HC_gene_5925_tx_3 1 + 636740 640001 . 2 1742,1459 0,1803 -chrXII 636740 640003 HC_gene_5925_tx_4 1 + 636740 640003 . 1 3264 0 -chrXII 636740 640004 HC_gene_5925_tx_5 2 + 636740 640004 . 1 3265 0 -chrXII 636740 640005 HC_gene_5925_tx_6 10 + 636740 640005 . 1 3266 0 -chrXII 636740 640006 HC_gene_5925_tx_7 3 + 636740 640006 . 1 3267 0 -chrXII 636740 640007 HC_gene_5925_tx_8 2 + 636740 640007 . 1 3268 0 -chrXII 636740 640008 HC_gene_5925_tx_9 2 + 636740 640008 . 1 3269 0 -chrXII 636740 640008 HC_gene_5925_tx_10 1 + 636740 640008 . 2 3187,31 0,3238 -chrXII 636740 640009 HC_gene_5925_tx_11 6 + 636740 640009 . 1 3270 0 -chrXII 636740 640009 HC_gene_5925_tx_12 1 + 636740 640009 . 2 1751,1391 0,1879 -chrXII 636740 640010 HC_gene_5925_tx_13 1 + 636740 640010 . 1 3271 0 -chrXII 636740 640010 HC_gene_5925_tx_14 1 + 636740 640010 . 2 1751,1468 0,1803 -chrXII 636740 640011 HC_gene_5925_tx_15 7 + 636740 640011 . 1 3272 0 -chrXII 636740 640012 HC_gene_5925_tx_16 4 + 636740 640012 . 1 3273 0 -chrXII 636740 640014 HC_gene_5925_tx_17 1 + 636740 640014 . 2 2400,809 0,2466 -chrXII 636740 640014 HC_gene_5925_tx_18 1 + 636740 640014 . 1 3275 0 -chrXII 636740 640015 HC_gene_5925_tx_19 2 + 636740 640015 . 1 3276 0 -chrXII 636740 640017 HC_gene_5925_tx_20 1 + 636740 640017 . 1 3278 0 -chrXII 636740 640018 HC_gene_5925_tx_21 6 + 636740 640018 . 1 3279 0 -chrXII 636740 640018 HC_gene_5925_tx_22 1 + 636740 640018 . 2 3171,31 0,3248 -chrXII 636740 640019 HC_gene_5925_tx_23 15 + 636740 640019 . 1 3280 0 -chrXII 636740 640020 HC_gene_5925_tx_24 2 + 636740 640020 . 1 3281 0 -chrXII 636740 640021 HC_gene_5925_tx_25 12 + 636740 640021 . 1 3282 0 -chrXII 636740 640021 HC_gene_5925_tx_26 1 + 636740 640021 . 2 1751,1365 0,1917 -chrXII 636740 640022 HC_gene_5925_tx_27 2 + 636740 640022 . 1 3283 0 -chrXII 636740 640022 HC_gene_5925_tx_28 1 + 636740 640022 . 2 1751,1449 0,1834 -chrXII 636740 640023 HC_gene_5925_tx_29 3 + 636740 640023 . 1 3284 0 -chrXII 636740 640026 HC_gene_5925_tx_30 1 + 636740 640026 . 1 3287 0 -chrXII 636740 640027 HC_gene_5925_tx_31 1 + 636740 640027 . 1 3288 0 -chrXII 636740 640028 HC_gene_5925_tx_32 8 + 636740 640028 . 1 3289 0 -chrXII 636740 640029 HC_gene_5925_tx_33 7 + 636740 640029 . 1 3290 0 -chrXII 636740 640029 HC_gene_5925_tx_34 1 + 636740 640029 . 2 1782,1440 0,1850 -chrXII 636740 640030 HC_gene_5925_tx_35 41 + 636740 640030 . 1 3291 0 -chrXII 636740 640030 HC_gene_5925_tx_36 1 + 636740 640030 . 2 2150,1056 0,2235 -chrXII 636740 640030 HC_gene_5925_tx_37 1 + 636740 640030 . 2 1709,1496 0,1795 -chrXII 636740 640030 HC_gene_5925_tx_38 1 + 636740 640030 . 2 1731,1488 0,1803 -chrXII 636740 640030 HC_gene_5925_tx_39 1 + 636740 640030 . 2 2735,465 0,2826 -chrXII 636740 640030 HC_gene_5925_tx_40 1 + 636740 640030 . 2 1742,1441 0,1850 -chrXII 636740 640030 HC_gene_5925_tx_41 1 + 636740 640030 . 2 1774,1457 0,1834 -chrXII 636740 640031 HC_gene_5925_tx_42 4 + 636740 640031 . 1 3292 0 -chrXII 636740 640031 HC_gene_5925_tx_43 1 + 636740 640031 . 3 474,543,1497 0,702,1795 -chrXII 636740 640032 HC_gene_5925_tx_44 8 + 636740 640032 . 1 3293 0 -chrXII 636740 640033 HC_gene_5925_tx_45 4 + 636740 640033 . 1 3294 0 -chrXII 636740 640034 HC_gene_5925_tx_46 2 + 636740 640034 . 1 3295 0 -chrXII 636740 640036 HC_gene_5925_tx_47 16 + 636740 640036 . 1 3297 0 -chrXII 636740 640036 HC_gene_5925_tx_48 1 + 636740 640036 . 2 2465,782 0,2515 -chrXII 636740 640036 HC_gene_5925_tx_49 1 + 636740 640036 . 2 2435,802 0,2495 -chrXII 636740 640037 HC_gene_5925_tx_50 1 + 636740 640037 . 1 3298 0 -chrXII 636740 640039 HC_gene_5925_tx_51 3 + 636740 640039 . 1 3300 0 -chrXII 636740 640040 HC_gene_5925_tx_52 7 + 636740 640040 . 1 3301 0 -chrXII 636740 640041 HC_gene_5925_tx_53 1 + 636740 640041 . 2 1652,1423 0,1879 -chrXII 636740 640041 HC_gene_5925_tx_54 1 + 636740 640041 . 1 3302 0 -chrXII 636740 640042 HC_gene_5925_tx_55 8 + 636740 640042 . 1 3303 0 -chrXII 636740 640042 HC_gene_5925_tx_56 1 + 636740 640042 . 2 1418,1822 0,1481 -chrXII 636740 640042 HC_gene_5925_tx_57 1 + 636740 640042 . 2 287,2969 0,334 -chrXII 636740 640045 HC_gene_5925_tx_58 2 + 636740 640045 . 1 3306 0 -chrXII 636740 640046 HC_gene_5925_tx_59 29 + 636740 640046 . 1 3307 0 -chrXII 636740 640046 HC_gene_5925_tx_60 1 + 636740 640046 . 2 1728,1457 0,1850 -chrXII 636740 640046 HC_gene_5925_tx_61 1 + 636740 640046 . 2 2894,339 0,2968 -chrXII 636740 640047 HC_gene_5925_tx_62 1 + 636740 640047 . 1 3308 0 -chrXII 636740 640050 HC_gene_5925_tx_63 8 + 636740 640050 . 1 3311 0 -chrXII 636740 640051 HC_gene_5925_tx_64 3 + 636740 640051 . 1 3312 0 -chrXII 636740 640052 HC_gene_5925_tx_65 1 + 636740 640052 . 1 3313 0 -chrXII 636740 640053 HC_gene_5925_tx_66 1 + 636740 640053 . 1 3314 0 -chrXII 636740 640054 HC_gene_5925_tx_67 1 + 636740 640054 . 1 3315 0 -chrXII 636740 640055 HC_gene_5925_tx_68 1 + 636740 640055 . 1 3316 0 -chrXII 636740 640056 HC_gene_5925_tx_69 1 + 636740 640056 . 2 1724,1483 0,1834 -chrXII 636740 640056 HC_gene_5925_tx_70 1 + 636740 640056 . 1 3317 0 -chrXII 636740 640057 HC_gene_5925_tx_71 1 + 636740 640057 . 1 3318 0 -chrXII 636740 640058 HC_gene_5925_tx_72 1 + 636740 640058 . 1 3319 0 -chrXII 636740 640059 HC_gene_5925_tx_73 4 + 636740 640059 . 1 3320 0 -chrXII 636740 640061 HC_gene_5925_tx_74 2 + 636740 640061 . 1 3322 0 -chrXII 636740 640062 HC_gene_5925_tx_75 2 + 636740 640062 . 1 3323 0 -chrXII 636740 640063 HC_gene_5925_tx_76 13 + 636740 640063 . 1 3324 0 -chrXII 636740 640064 HC_gene_5925_tx_77 11 + 636740 640064 . 1 3325 0 -chrXII 636740 640066 HC_gene_5925_tx_78 1 + 636740 640066 . 1 3327 0 -chrXII 636740 640067 HC_gene_5925_tx_79 4 + 636740 640067 . 1 3328 0 -chrXII 636740 640068 HC_gene_5925_tx_80 16 + 636740 640068 . 1 3329 0 -chrXII 636740 640068 HC_gene_5925_tx_81 1 + 636740 640068 . 2 1724,1526 0,1803 -chrXII 636740 640069 HC_gene_5925_tx_82 1 + 636740 640069 . 2 1251,1376 0,1954 -chrXII 636740 640069 HC_gene_5925_tx_83 4 + 636740 640069 . 1 3330 0 -chrXII 636740 640070 HC_gene_5925_tx_84 1 + 636740 640070 . 1 3331 0 -chrXII 636740 640074 HC_gene_5925_tx_85 1 + 636740 640074 . 1 3335 0 -chrXII 636740 640075 HC_gene_5925_tx_86 1 + 636740 640075 . 1 3336 0 -chrXII 636740 640077 HC_gene_5925_tx_87 2 + 636740 640077 . 1 3338 0 -chrXII 636740 640078 HC_gene_5925_tx_88 4 + 636740 640078 . 1 3339 0 -chrXII 636740 640078 HC_gene_5925_tx_89 1 + 636740 640078 . 2 1497,1782 0,1557 -chrXII 636740 640079 HC_gene_5925_tx_90 1 + 636740 640079 . 2 2873,391 0,2949 -chrXII 636740 640079 HC_gene_5925_tx_91 5 + 636740 640079 . 1 3340 0 -chrXII 636740 640080 HC_gene_5925_tx_92 1 + 636740 640080 . 2 2807,448 0,2893 -chrXII 636740 640080 HC_gene_5925_tx_93 4 + 636740 640080 . 1 3341 0 -chrXII 636740 640080 HC_gene_5925_tx_94 1 + 636740 640080 . 2 2831,434 0,2907 -chrXII 636740 640081 HC_gene_5925_tx_95 10 + 636740 640081 . 1 3342 0 -chrXII 636740 640081 HC_gene_5925_tx_96 1 + 636740 640081 . 2 1245,1639 0,1703 -chrXII 636740 640082 HC_gene_5925_tx_97 2 + 636740 640082 . 1 3343 0 -chrXII 636740 640083 HC_gene_5925_tx_98 1 + 636740 640083 . 1 3344 0 -chrXII 636740 640084 HC_gene_5925_tx_99 4 + 636740 640084 . 1 3345 0 -chrXII 636740 640085 HC_gene_5925_tx_100 35 + 636740 640085 . 1 3346 0 -chrXII 636740 640085 HC_gene_5925_tx_101 1 + 636740 640085 . 2 2704,584 0,2762 -chrXII 636740 640085 HC_gene_5925_tx_102 1 + 636740 640085 . 2 1307,1988 0,1358 -chrXII 636740 640087 HC_gene_5925_tx_103 6 + 636740 640087 . 1 3348 0 -chrXII 636740 640087 HC_gene_5925_tx_104 1 + 636740 640087 . 2 1757,1498 0,1850 -chrXII 636751 640009 HC_gene_5925_tx_105 1 + 636751 640009 . 3 1688,1353,30 0,1823,3229 -chrXII 636885 640019 HC_gene_5925_tx_106 1 + 636885 640019 . 2 2269,792 0,2343 -chrXII 636949 640000 HC_gene_5925_tx_107 2 + 636949 640000 . 1 3052 0 -chrXII 636949 640005 HC_gene_5925_tx_108 1 + 636949 640005 . 1 3057 0 -chrXII 636949 640008 HC_gene_5925_tx_109 1 + 636949 640008 . 1 3060 0 -chrXII 636949 640009 HC_gene_5925_tx_110 1 + 636949 640009 . 2 1542,1415 0,1646 -chrXII 636949 640009 HC_gene_5925_tx_111 1 + 636949 640009 . 1 3061 0 -chrXII 636949 640011 HC_gene_5925_tx_112 1 + 636949 640011 . 1 3063 0 -chrXII 636949 640012 HC_gene_5925_tx_113 1 + 636949 640012 . 1 3064 0 -chrXII 636949 640017 HC_gene_5925_tx_114 1 + 636949 640017 . 1 3069 0 -chrXII 636949 640018 HC_gene_5925_tx_115 1 + 636949 640018 . 1 3070 0 -chrXII 636949 640019 HC_gene_5925_tx_116 2 + 636949 640019 . 1 3071 0 -chrXII 636949 640021 HC_gene_5925_tx_117 4 + 636949 640021 . 1 3073 0 -chrXII 636949 640022 HC_gene_5925_tx_118 1 + 636949 640022 . 1 3074 0 -chrXII 636949 640028 HC_gene_5925_tx_119 1 + 636949 640028 . 1 3080 0 -chrXII 636949 640030 HC_gene_5925_tx_120 2 + 636949 640030 . 1 3082 0 -chrXII 636949 640031 HC_gene_5925_tx_121 1 + 636949 640031 . 1 3083 0 -chrXII 636949 640033 HC_gene_5925_tx_122 1 + 636949 640033 . 1 3085 0 -chrXII 636949 640034 HC_gene_5925_tx_123 1 + 636949 640034 . 1 3086 0 -chrXII 636949 640036 HC_gene_5925_tx_124 2 + 636949 640036 . 1 3088 0 -chrXII 636949 640040 HC_gene_5925_tx_125 1 + 636949 640040 . 1 3092 0 -chrXII 636949 640042 HC_gene_5925_tx_126 1 + 636949 640042 . 1 3094 0 -chrXII 636949 640044 HC_gene_5925_tx_127 1 + 636949 640044 . 1 3096 0 -chrXII 636949 640045 HC_gene_5925_tx_128 3 + 636949 640045 . 1 3097 0 -chrXII 636949 640046 HC_gene_5925_tx_129 6 + 636949 640046 . 1 3098 0 -chrXII 636949 640050 HC_gene_5925_tx_130 2 + 636949 640050 . 1 3102 0 -chrXII 636949 640054 HC_gene_5925_tx_131 1 + 636949 640054 . 1 3106 0 -chrXII 636949 640055 HC_gene_5925_tx_132 1 + 636949 640055 . 1 3107 0 -chrXII 636949 640057 HC_gene_5925_tx_133 1 + 636949 640057 . 1 3109 0 -chrXII 636949 640058 HC_gene_5925_tx_134 1 + 636949 640058 . 1 3110 0 -chrXII 636949 640061 HC_gene_5925_tx_135 1 + 636949 640061 . 1 3113 0 -chrXII 636949 640063 HC_gene_5925_tx_136 1 + 636949 640063 . 1 3115 0 -chrXII 636949 640064 HC_gene_5925_tx_137 3 + 636949 640064 . 1 3116 0 -chrXII 636949 640068 HC_gene_5925_tx_138 1 + 636949 640068 . 1 3120 0 -chrXII 636949 640069 HC_gene_5925_tx_139 1 + 636949 640069 . 1 3121 0 -chrXII 636949 640081 HC_gene_5925_tx_140 1 + 636949 640081 . 1 3133 0 -chrXII 636949 640084 HC_gene_5925_tx_141 1 + 636949 640084 . 1 3136 0 -chrXII 636949 640085 HC_gene_5925_tx_142 6 + 636949 640085 . 1 3137 0 -chrXII 637089 640030 HC_gene_5925_tx_143 1 + 637089 640030 . 2 43,2181 0,761 -chrXII 637129 640003 HC_gene_5925_tx_144 1 + 637129 640003 . 1 2875 0 -chrXII 637129 640008 HC_gene_5925_tx_145 1 + 637129 640008 . 1 2880 0 -chrXII 637129 640019 HC_gene_5925_tx_146 1 + 637129 640019 . 1 2891 0 -chrXII 637129 640023 HC_gene_5925_tx_147 1 + 637129 640023 . 2 476,2315 0,580 -chrXII 637129 640028 HC_gene_5925_tx_148 1 + 637129 640028 . 1 2900 0 -chrXII 637129 640030 HC_gene_5925_tx_149 1 + 637129 640030 . 1 2902 0 -chrXII 637129 640031 HC_gene_5925_tx_150 1 + 637129 640031 . 1 2903 0 -chrXII 637129 640032 HC_gene_5925_tx_151 2 + 637129 640032 . 1 2904 0 -chrXII 637129 640039 HC_gene_5925_tx_152 1 + 637129 640039 . 1 2911 0 -chrXII 637129 640046 HC_gene_5925_tx_153 5 + 637129 640046 . 1 2918 0 -chrXII 637129 640055 HC_gene_5925_tx_154 1 + 637129 640055 . 1 2927 0 -chrXII 637129 640059 HC_gene_5925_tx_155 1 + 637129 640059 . 1 2931 0 -chrXII 637129 640068 HC_gene_5925_tx_156 1 + 637129 640068 . 1 2940 0 -chrXII 637129 640078 HC_gene_5925_tx_157 1 + 637129 640078 . 1 2950 0 -chrXII 637129 640079 HC_gene_5925_tx_158 1 + 637129 640079 . 2 2782,85 0,2866 -chrXII 637129 640081 HC_gene_5925_tx_159 1 + 637129 640081 . 1 2953 0 -chrXII 637129 640085 HC_gene_5925_tx_160 1 + 637129 640085 . 1 2957 0 -chrXII 637285 640064 HC_gene_5925_tx_161 1 + 637285 640064 . 2 1488,1231 0,1549 -chrXII 637341 638638 HC_gene_5925_tx_762 1 + 637341 638638 . 1 1298 0 -chrXII 637341 640000 HC_gene_5925_tx_162 8 + 637341 640000 . 1 2660 0 -chrXII 637341 640001 HC_gene_5925_tx_163 2 + 637341 640001 . 1 2661 0 -chrXII 637341 640002 HC_gene_5925_tx_164 2 + 637341 640002 . 1 2662 0 -chrXII 637341 640003 HC_gene_5925_tx_165 1 + 637341 640003 . 1 2663 0 -chrXII 637341 640004 HC_gene_5925_tx_166 1 + 637341 640004 . 1 2664 0 -chrXII 637341 640005 HC_gene_5925_tx_167 4 + 637341 640005 . 1 2665 0 -chrXII 637341 640006 HC_gene_5925_tx_168 2 + 637341 640006 . 1 2666 0 -chrXII 637341 640006 HC_gene_5925_tx_169 1 + 637341 640006 . 2 1258,1115 0,1551 -chrXII 637341 640007 HC_gene_5925_tx_170 4 + 637341 640007 . 1 2667 0 -chrXII 637341 640008 HC_gene_5925_tx_171 3 + 637341 640008 . 1 2668 0 -chrXII 637341 640009 HC_gene_5925_tx_172 2 + 637341 640009 . 1 2669 0 -chrXII 637341 640010 HC_gene_5925_tx_173 1 + 637341 640010 . 1 2670 0 -chrXII 637341 640011 HC_gene_5925_tx_174 4 + 637341 640011 . 1 2671 0 -chrXII 637341 640012 HC_gene_5925_tx_175 1 + 637341 640012 . 1 2672 0 -chrXII 637341 640018 HC_gene_5925_tx_176 4 + 637341 640018 . 1 2678 0 -chrXII 637341 640019 HC_gene_5925_tx_177 10 + 637341 640019 . 1 2679 0 -chrXII 637341 640020 HC_gene_5925_tx_178 2 + 637341 640020 . 1 2680 0 -chrXII 637341 640021 HC_gene_5925_tx_179 20 + 637341 640021 . 1 2681 0 -chrXII 637341 640021 HC_gene_5925_tx_180 1 + 637341 640021 . 3 1477,901,56 0,1656,2625 -chrXII 637341 640021 HC_gene_5925_tx_181 1 + 637341 640021 . 2 1531,1058 0,1623 -chrXII 637341 640022 HC_gene_5925_tx_182 1 + 637341 640022 . 2 1150,1480 0,1202 -chrXII 637341 640022 HC_gene_5925_tx_183 1 + 637341 640022 . 1 2682 0 -chrXII 637341 640023 HC_gene_5925_tx_184 2 + 637341 640023 . 1 2683 0 -chrXII 637341 640024 HC_gene_5925_tx_185 1 + 637341 640024 . 1 2684 0 -chrXII 637341 640026 HC_gene_5925_tx_186 1 + 637341 640026 . 1 2686 0 -chrXII 637341 640028 HC_gene_5925_tx_187 4 + 637341 640028 . 1 2688 0 -chrXII 637341 640028 HC_gene_5925_tx_188 1 + 637341 640028 . 2 1471,1162 0,1526 -chrXII 637341 640029 HC_gene_5925_tx_189 5 + 637341 640029 . 1 2689 0 -chrXII 637341 640030 HC_gene_5925_tx_190 1 + 637341 640030 . 2 1348,1242 0,1448 -chrXII 637341 640030 HC_gene_5925_tx_191 30 + 637341 640030 . 1 2690 0 -chrXII 637341 640030 HC_gene_5925_tx_192 1 + 637341 640030 . 2 698,1936 0,754 -chrXII 637341 640030 HC_gene_5925_tx_193 1 + 637341 640030 . 2 1477,1067 0,1623 -chrXII 637341 640031 HC_gene_5925_tx_194 3 + 637341 640031 . 1 2691 0 -chrXII 637341 640032 HC_gene_5925_tx_195 4 + 637341 640032 . 1 2692 0 -chrXII 637341 640033 HC_gene_5925_tx_196 8 + 637341 640033 . 1 2693 0 -chrXII 637341 640034 HC_gene_5925_tx_197 5 + 637341 640034 . 1 2694 0 -chrXII 637341 640036 HC_gene_5925_tx_198 10 + 637341 640036 . 1 2696 0 -chrXII 637341 640036 HC_gene_5925_tx_199 1 + 637341 640036 . 2 1531,1027 0,1669 -chrXII 637341 640037 HC_gene_5925_tx_200 1 + 637341 640037 . 1 2697 0 -chrXII 637341 640039 HC_gene_5925_tx_201 3 + 637341 640039 . 1 2699 0 -chrXII 637341 640040 HC_gene_5925_tx_202 2 + 637341 640040 . 1 2700 0 -chrXII 637341 640042 HC_gene_5925_tx_203 5 + 637341 640042 . 1 2702 0 -chrXII 637341 640043 HC_gene_5925_tx_204 1 + 637341 640043 . 1 2703 0 -chrXII 637341 640046 HC_gene_5925_tx_205 14 + 637341 640046 . 1 2706 0 -chrXII 637341 640047 HC_gene_5925_tx_206 1 + 637341 640047 . 1 2707 0 -chrXII 637341 640049 HC_gene_5925_tx_207 2 + 637341 640049 . 1 2709 0 -chrXII 637341 640050 HC_gene_5925_tx_208 5 + 637341 640050 . 1 2710 0 -chrXII 637341 640051 HC_gene_5925_tx_209 1 + 637341 640051 . 1 2711 0 -chrXII 637341 640054 HC_gene_5925_tx_210 1 + 637341 640054 . 1 2714 0 -chrXII 637341 640055 HC_gene_5925_tx_211 5 + 637341 640055 . 1 2715 0 -chrXII 637341 640057 HC_gene_5925_tx_212 3 + 637341 640057 . 1 2717 0 -chrXII 637341 640058 HC_gene_5925_tx_213 3 + 637341 640058 . 1 2718 0 -chrXII 637341 640059 HC_gene_5925_tx_214 1 + 637341 640059 . 1 2719 0 -chrXII 637341 640061 HC_gene_5925_tx_215 2 + 637341 640061 . 1 2721 0 -chrXII 637341 640063 HC_gene_5925_tx_216 13 + 637341 640063 . 1 2723 0 -chrXII 637341 640064 HC_gene_5925_tx_217 8 + 637341 640064 . 1 2724 0 -chrXII 637341 640064 HC_gene_5925_tx_218 1 + 637341 640064 . 2 1471,1198 0,1526 -chrXII 637341 640066 HC_gene_5925_tx_219 1 + 637341 640066 . 1 2726 0 -chrXII 637341 640067 HC_gene_5925_tx_220 3 + 637341 640067 . 1 2727 0 -chrXII 637341 640068 HC_gene_5925_tx_221 10 + 637341 640068 . 1 2728 0 -chrXII 637341 640068 HC_gene_5925_tx_222 1 + 637341 640068 . 2 1150,1467 0,1261 -chrXII 637341 640069 HC_gene_5925_tx_223 1 + 637341 640069 . 1 2729 0 -chrXII 637341 640076 HC_gene_5925_tx_224 1 + 637341 640076 . 1 2736 0 -chrXII 637341 640077 HC_gene_5925_tx_225 3 + 637341 640077 . 1 2737 0 -chrXII 637341 640077 HC_gene_5925_tx_226 1 + 637341 640077 . 2 1590,1070 0,1667 -chrXII 637341 640078 HC_gene_5925_tx_227 3 + 637341 640078 . 1 2738 0 -chrXII 637341 640079 HC_gene_5925_tx_228 1 + 637341 640079 . 2 700,1783 0,956 -chrXII 637341 640079 HC_gene_5925_tx_229 6 + 637341 640079 . 1 2739 0 -chrXII 637341 640080 HC_gene_5925_tx_230 6 + 637341 640080 . 1 2740 0 -chrXII 637341 640081 HC_gene_5925_tx_231 2 + 637341 640081 . 1 2741 0 -chrXII 637341 640082 HC_gene_5925_tx_232 2 + 637341 640082 . 1 2742 0 -chrXII 637341 640085 HC_gene_5925_tx_233 15 + 637341 640085 . 1 2745 0 -chrXII 637341 640085 HC_gene_5925_tx_234 1 + 637341 640085 . 2 518,1734 0,1011 -chrXII 637341 640085 HC_gene_5925_tx_235 1 + 637341 640085 . 2 781,1639 0,1106 -chrXII 637341 640085 HC_gene_5925_tx_236 1 + 637341 640085 . 2 2539,123 0,2622 -chrXII 637341 640087 HC_gene_5925_tx_237 5 + 637341 640087 . 1 2747 0 -chrXII 637341 640088 HC_gene_5925_tx_238 1 + 637341 640088 . 1 2748 0 -chrXII 637341 640089 HC_gene_5925_tx_239 1 + 637341 640089 . 1 2749 0 -chrXII 637671 640021 HC_gene_5925_tx_240 1 + 637671 640021 . 2 1225,992 0,1359 -chrXII 638062 640000 HC_gene_5925_tx_241 1 + 638062 640000 . 1 1939 0 -chrXII 638062 640001 HC_gene_5925_tx_242 3 + 638062 640001 . 1 1940 0 -chrXII 638062 640002 HC_gene_5925_tx_243 1 + 638062 640002 . 1 1941 0 -chrXII 638062 640004 HC_gene_5925_tx_244 2 + 638062 640004 . 1 1943 0 -chrXII 638062 640005 HC_gene_5925_tx_245 3 + 638062 640005 . 1 1944 0 -chrXII 638062 640006 HC_gene_5925_tx_246 1 + 638062 640006 . 1 1945 0 -chrXII 638062 640007 HC_gene_5925_tx_247 3 + 638062 640007 . 1 1946 0 -chrXII 638062 640008 HC_gene_5925_tx_248 2 + 638062 640008 . 1 1947 0 -chrXII 638062 640011 HC_gene_5925_tx_249 2 + 638062 640011 . 1 1950 0 -chrXII 638062 640012 HC_gene_5925_tx_250 1 + 638062 640012 . 1 1951 0 -chrXII 638062 640017 HC_gene_5925_tx_251 1 + 638062 640017 . 1 1956 0 -chrXII 638062 640018 HC_gene_5925_tx_252 4 + 638062 640018 . 1 1957 0 -chrXII 638062 640019 HC_gene_5925_tx_253 5 + 638062 640019 . 1 1958 0 -chrXII 638062 640021 HC_gene_5925_tx_254 6 + 638062 640021 . 1 1960 0 -chrXII 638062 640022 HC_gene_5925_tx_255 1 + 638062 640022 . 1 1961 0 -chrXII 638062 640023 HC_gene_5925_tx_256 2 + 638062 640023 . 1 1962 0 -chrXII 638062 640028 HC_gene_5925_tx_257 3 + 638062 640028 . 1 1967 0 -chrXII 638062 640029 HC_gene_5925_tx_258 4 + 638062 640029 . 1 1968 0 -chrXII 638062 640030 HC_gene_5925_tx_259 20 + 638062 640030 . 1 1969 0 -chrXII 638062 640032 HC_gene_5925_tx_260 5 + 638062 640032 . 1 1971 0 -chrXII 638062 640032 HC_gene_5925_tx_261 1 + 638062 640032 . 2 162,1414 0,557 -chrXII 638062 640033 HC_gene_5925_tx_262 1 + 638062 640033 . 1 1972 0 -chrXII 638062 640037 HC_gene_5925_tx_263 1 + 638062 640037 . 1 1976 0 -chrXII 638062 640039 HC_gene_5925_tx_264 1 + 638062 640039 . 1 1978 0 -chrXII 638062 640040 HC_gene_5925_tx_265 4 + 638062 640040 . 1 1979 0 -chrXII 638062 640041 HC_gene_5925_tx_266 1 + 638062 640041 . 1 1980 0 -chrXII 638062 640042 HC_gene_5925_tx_267 2 + 638062 640042 . 1 1981 0 -chrXII 638062 640043 HC_gene_5925_tx_268 1 + 638062 640043 . 1 1982 0 -chrXII 638062 640045 HC_gene_5925_tx_269 1 + 638062 640045 . 1 1984 0 -chrXII 638062 640046 HC_gene_5925_tx_270 13 + 638062 640046 . 1 1985 0 -chrXII 638062 640047 HC_gene_5925_tx_271 1 + 638062 640047 . 2 1818,30 0,1956 -chrXII 638062 640050 HC_gene_5925_tx_272 6 + 638062 640050 . 1 1989 0 -chrXII 638062 640052 HC_gene_5925_tx_273 1 + 638062 640052 . 1 1991 0 -chrXII 638062 640055 HC_gene_5925_tx_274 1 + 638062 640055 . 1 1994 0 -chrXII 638062 640056 HC_gene_5925_tx_275 2 + 638062 640056 . 1 1995 0 -chrXII 638062 640057 HC_gene_5925_tx_276 1 + 638062 640057 . 1 1996 0 -chrXII 638062 640058 HC_gene_5925_tx_277 3 + 638062 640058 . 1 1997 0 -chrXII 638062 640062 HC_gene_5925_tx_278 1 + 638062 640062 . 1 2001 0 -chrXII 638062 640063 HC_gene_5925_tx_279 5 + 638062 640063 . 1 2002 0 -chrXII 638062 640067 HC_gene_5925_tx_280 2 + 638062 640067 . 1 2006 0 -chrXII 638062 640068 HC_gene_5925_tx_281 6 + 638062 640068 . 1 2007 0 -chrXII 638062 640068 HC_gene_5925_tx_282 1 + 638062 640068 . 2 1113,778 0,1229 -chrXII 638062 640069 HC_gene_5925_tx_283 1 + 638062 640069 . 2 1581,320 0,1688 -chrXII 638062 640070 HC_gene_5925_tx_284 1 + 638062 640070 . 1 2009 0 -chrXII 638062 640077 HC_gene_5925_tx_285 1 + 638062 640077 . 1 2016 0 -chrXII 638062 640078 HC_gene_5925_tx_286 3 + 638062 640078 . 1 2017 0 -chrXII 638062 640079 HC_gene_5925_tx_287 2 + 638062 640079 . 1 2018 0 -chrXII 638062 640080 HC_gene_5925_tx_288 2 + 638062 640080 . 1 2019 0 -chrXII 638062 640081 HC_gene_5925_tx_289 3 + 638062 640081 . 1 2020 0 -chrXII 638062 640081 HC_gene_5925_tx_290 1 + 638062 640081 . 2 1113,864 0,1156 -chrXII 638062 640081 HC_gene_5925_tx_291 1 + 638062 640081 . 2 1737,56 0,1964 -chrXII 638062 640083 HC_gene_5925_tx_292 1 + 638062 640083 . 1 2022 0 -chrXII 638062 640085 HC_gene_5925_tx_293 12 + 638062 640085 . 1 2024 0 -chrXII 638062 640087 HC_gene_5925_tx_294 3 + 638062 640087 . 1 2026 0 -chrXII 638062 640087 HC_gene_5925_tx_295 1 + 638062 640087 . 2 1849,55 0,1971 -chrXII 638064 640006 HC_gene_5925_tx_296 1 + 638064 640006 . 2 271,1452 0,491 -chrXII 638267 640009 HC_gene_5925_tx_297 1 + 638267 640009 . 1 1743 0 -chrXII 638267 640011 HC_gene_5925_tx_298 1 + 638267 640011 . 1 1745 0 -chrXII 638267 640017 HC_gene_5925_tx_299 1 + 638267 640017 . 1 1751 0 -chrXII 638267 640018 HC_gene_5925_tx_300 1 + 638267 640018 . 1 1752 0 -chrXII 638267 640019 HC_gene_5925_tx_301 2 + 638267 640019 . 1 1753 0 -chrXII 638267 640020 HC_gene_5925_tx_302 1 + 638267 640020 . 1 1754 0 -chrXII 638267 640021 HC_gene_5925_tx_303 2 + 638267 640021 . 1 1755 0 -chrXII 638267 640030 HC_gene_5925_tx_304 5 + 638267 640030 . 1 1764 0 -chrXII 638267 640034 HC_gene_5925_tx_305 1 + 638267 640034 . 1 1768 0 -chrXII 638267 640036 HC_gene_5925_tx_306 2 + 638267 640036 . 1 1770 0 -chrXII 638267 640039 HC_gene_5925_tx_307 1 + 638267 640039 . 1 1773 0 -chrXII 638267 640041 HC_gene_5925_tx_308 1 + 638267 640041 . 1 1775 0 -chrXII 638267 640042 HC_gene_5925_tx_309 1 + 638267 640042 . 1 1776 0 -chrXII 638267 640046 HC_gene_5925_tx_310 2 + 638267 640046 . 1 1780 0 -chrXII 638267 640049 HC_gene_5925_tx_311 1 + 638267 640049 . 1 1783 0 -chrXII 638267 640063 HC_gene_5925_tx_312 1 + 638267 640063 . 1 1797 0 -chrXII 638267 640066 HC_gene_5925_tx_313 1 + 638267 640066 . 1 1800 0 -chrXII 638267 640078 HC_gene_5925_tx_314 1 + 638267 640078 . 1 1812 0 -chrXII 638267 640079 HC_gene_5925_tx_315 2 + 638267 640079 . 1 1813 0 -chrXII 638267 640081 HC_gene_5925_tx_316 1 + 638267 640081 . 1 1815 0 -chrXII 638267 640085 HC_gene_5925_tx_317 2 + 638267 640085 . 1 1819 0 -chrXII 638267 640087 HC_gene_5925_tx_318 1 + 638267 640087 . 1 1821 0 -chrXII 638267 640088 HC_gene_5925_tx_319 1 + 638267 640088 . 1 1822 0 -chrXII 638326 640000 HC_gene_5925_tx_320 1 + 638326 640000 . 1 1675 0 -chrXII 638326 640001 HC_gene_5925_tx_321 1 + 638326 640001 . 1 1676 0 -chrXII 638326 640003 HC_gene_5925_tx_322 1 + 638326 640003 . 1 1678 0 -chrXII 638326 640004 HC_gene_5925_tx_323 1 + 638326 640004 . 1 1679 0 -chrXII 638326 640006 HC_gene_5925_tx_324 1 + 638326 640006 . 1 1681 0 -chrXII 638326 640007 HC_gene_5925_tx_325 2 + 638326 640007 . 1 1682 0 -chrXII 638326 640011 HC_gene_5925_tx_326 1 + 638326 640011 . 1 1686 0 -chrXII 638326 640019 HC_gene_5925_tx_327 1 + 638326 640019 . 1 1694 0 -chrXII 638326 640021 HC_gene_5925_tx_328 3 + 638326 640021 . 1 1696 0 -chrXII 638326 640028 HC_gene_5925_tx_329 2 + 638326 640028 . 1 1703 0 -chrXII 638326 640029 HC_gene_5925_tx_330 2 + 638326 640029 . 1 1704 0 -chrXII 638326 640030 HC_gene_5925_tx_331 7 + 638326 640030 . 1 1705 0 -chrXII 638326 640036 HC_gene_5925_tx_332 1 + 638326 640036 . 1 1711 0 -chrXII 638326 640039 HC_gene_5925_tx_333 2 + 638326 640039 . 1 1714 0 -chrXII 638326 640040 HC_gene_5925_tx_334 2 + 638326 640040 . 1 1715 0 -chrXII 638326 640041 HC_gene_5925_tx_335 1 + 638326 640041 . 1 1716 0 -chrXII 638326 640042 HC_gene_5925_tx_336 1 + 638326 640042 . 1 1717 0 -chrXII 638326 640046 HC_gene_5925_tx_337 6 + 638326 640046 . 1 1721 0 -chrXII 638326 640057 HC_gene_5925_tx_338 2 + 638326 640057 . 1 1732 0 -chrXII 638326 640064 HC_gene_5925_tx_339 1 + 638326 640064 . 1 1739 0 -chrXII 638326 640068 HC_gene_5925_tx_340 7 + 638326 640068 . 1 1743 0 -chrXII 638326 640069 HC_gene_5925_tx_341 3 + 638326 640069 . 1 1744 0 -chrXII 638326 640076 HC_gene_5925_tx_342 2 + 638326 640076 . 1 1751 0 -chrXII 638326 640078 HC_gene_5925_tx_343 1 + 638326 640078 . 1 1753 0 -chrXII 638326 640079 HC_gene_5925_tx_344 1 + 638326 640079 . 1 1754 0 -chrXII 638326 640080 HC_gene_5925_tx_345 1 + 638326 640080 . 1 1755 0 -chrXII 638326 640081 HC_gene_5925_tx_346 4 + 638326 640081 . 1 1756 0 -chrXII 638326 640082 HC_gene_5925_tx_347 1 + 638326 640082 . 1 1757 0 -chrXII 638326 640085 HC_gene_5925_tx_348 3 + 638326 640085 . 1 1760 0 -chrXII 638326 640087 HC_gene_5925_tx_349 4 + 638326 640087 . 1 1762 0 -chrXII 638326 640088 HC_gene_5925_tx_350 1 + 638326 640088 . 1 1763 0 -chrXII 638427 640000 HC_gene_5925_tx_351 1 + 638427 640000 . 1 1574 0 -chrXII 638427 640001 HC_gene_5925_tx_352 1 + 638427 640001 . 1 1575 0 -chrXII 638427 640003 HC_gene_5925_tx_353 2 + 638427 640003 . 1 1577 0 -chrXII 638427 640004 HC_gene_5925_tx_354 1 + 638427 640004 . 1 1578 0 -chrXII 638427 640006 HC_gene_5925_tx_355 1 + 638427 640006 . 1 1580 0 -chrXII 638427 640010 HC_gene_5925_tx_356 2 + 638427 640010 . 1 1584 0 -chrXII 638427 640011 HC_gene_5925_tx_357 2 + 638427 640011 . 1 1585 0 -chrXII 638427 640014 HC_gene_5925_tx_358 1 + 638427 640014 . 1 1588 0 -chrXII 638427 640018 HC_gene_5925_tx_359 3 + 638427 640018 . 1 1592 0 -chrXII 638427 640020 HC_gene_5925_tx_360 3 + 638427 640020 . 1 1594 0 -chrXII 638427 640021 HC_gene_5925_tx_361 4 + 638427 640021 . 1 1595 0 -chrXII 638427 640029 HC_gene_5925_tx_362 1 + 638427 640029 . 1 1603 0 -chrXII 638427 640030 HC_gene_5925_tx_363 9 + 638427 640030 . 1 1604 0 -chrXII 638427 640032 HC_gene_5925_tx_364 1 + 638427 640032 . 1 1606 0 -chrXII 638427 640036 HC_gene_5925_tx_365 1 + 638427 640036 . 1 1610 0 -chrXII 638427 640039 HC_gene_5925_tx_366 1 + 638427 640039 . 1 1613 0 -chrXII 638427 640041 HC_gene_5925_tx_367 2 + 638427 640041 . 1 1615 0 -chrXII 638427 640042 HC_gene_5925_tx_368 3 + 638427 640042 . 1 1616 0 -chrXII 638427 640046 HC_gene_5925_tx_369 5 + 638427 640046 . 1 1620 0 -chrXII 638427 640047 HC_gene_5925_tx_370 2 + 638427 640047 . 1 1621 0 -chrXII 638427 640059 HC_gene_5925_tx_371 3 + 638427 640059 . 1 1633 0 -chrXII 638427 640062 HC_gene_5925_tx_372 2 + 638427 640062 . 1 1636 0 -chrXII 638427 640063 HC_gene_5925_tx_373 2 + 638427 640063 . 1 1637 0 -chrXII 638427 640066 HC_gene_5925_tx_374 1 + 638427 640066 . 1 1640 0 -chrXII 638427 640069 HC_gene_5925_tx_375 3 + 638427 640069 . 1 1643 0 -chrXII 638427 640076 HC_gene_5925_tx_376 1 + 638427 640076 . 1 1650 0 -chrXII 638427 640077 HC_gene_5925_tx_377 2 + 638427 640077 . 1 1651 0 -chrXII 638427 640078 HC_gene_5925_tx_378 2 + 638427 640078 . 1 1652 0 -chrXII 638427 640079 HC_gene_5925_tx_379 1 + 638427 640079 . 1 1653 0 -chrXII 638427 640080 HC_gene_5925_tx_380 2 + 638427 640080 . 1 1654 0 -chrXII 638427 640081 HC_gene_5925_tx_381 2 + 638427 640081 . 1 1655 0 -chrXII 638427 640082 HC_gene_5925_tx_382 1 + 638427 640082 . 1 1656 0 -chrXII 638427 640084 HC_gene_5925_tx_383 1 + 638427 640084 . 1 1658 0 -chrXII 638427 640085 HC_gene_5925_tx_384 7 + 638427 640085 . 1 1659 0 -chrXII 638548 640000 HC_gene_5925_tx_385 1 + 638548 640000 . 1 1453 0 -chrXII 638548 640006 HC_gene_5925_tx_386 1 + 638548 640006 . 1 1459 0 -chrXII 638548 640007 HC_gene_5925_tx_387 1 + 638548 640007 . 1 1460 0 -chrXII 638548 640008 HC_gene_5925_tx_388 1 + 638548 640008 . 1 1461 0 -chrXII 638548 640009 HC_gene_5925_tx_389 1 + 638548 640009 . 2 896,469 0,993 -chrXII 638548 640010 HC_gene_5925_tx_390 1 + 638548 640010 . 1 1463 0 -chrXII 638548 640011 HC_gene_5925_tx_391 2 + 638548 640011 . 1 1464 0 -chrXII 638548 640014 HC_gene_5925_tx_392 1 + 638548 640014 . 2 1350,35 0,1432 -chrXII 638548 640016 HC_gene_5925_tx_393 1 + 638548 640016 . 1 1469 0 -chrXII 638548 640018 HC_gene_5925_tx_394 1 + 638548 640018 . 1 1471 0 -chrXII 638548 640019 HC_gene_5925_tx_395 1 + 638548 640019 . 1 1472 0 -chrXII 638548 640021 HC_gene_5925_tx_396 3 + 638548 640021 . 1 1474 0 -chrXII 638548 640028 HC_gene_5925_tx_397 1 + 638548 640028 . 1 1481 0 -chrXII 638548 640029 HC_gene_5925_tx_398 2 + 638548 640029 . 1 1482 0 -chrXII 638548 640030 HC_gene_5925_tx_399 4 + 638548 640030 . 1 1483 0 -chrXII 638548 640036 HC_gene_5925_tx_400 1 + 638548 640036 . 1 1489 0 -chrXII 638548 640037 HC_gene_5925_tx_401 1 + 638548 640037 . 1 1490 0 -chrXII 638548 640040 HC_gene_5925_tx_402 3 + 638548 640040 . 1 1493 0 -chrXII 638548 640042 HC_gene_5925_tx_403 4 + 638548 640042 . 1 1495 0 -chrXII 638548 640045 HC_gene_5925_tx_404 2 + 638548 640045 . 1 1498 0 -chrXII 638548 640046 HC_gene_5925_tx_405 7 + 638548 640046 . 1 1499 0 -chrXII 638548 640049 HC_gene_5925_tx_406 1 + 638548 640049 . 1 1502 0 -chrXII 638548 640050 HC_gene_5925_tx_407 1 + 638548 640050 . 1 1503 0 -chrXII 638548 640052 HC_gene_5925_tx_408 1 + 638548 640052 . 1 1505 0 -chrXII 638548 640063 HC_gene_5925_tx_409 2 + 638548 640063 . 1 1516 0 -chrXII 638548 640064 HC_gene_5925_tx_410 2 + 638548 640064 . 1 1517 0 -chrXII 638548 640067 HC_gene_5925_tx_411 1 + 638548 640067 . 1 1520 0 -chrXII 638548 640068 HC_gene_5925_tx_412 3 + 638548 640068 . 1 1521 0 -chrXII 638548 640069 HC_gene_5925_tx_413 2 + 638548 640069 . 1 1522 0 -chrXII 638548 640076 HC_gene_5925_tx_414 1 + 638548 640076 . 1 1529 0 -chrXII 638548 640077 HC_gene_5925_tx_415 1 + 638548 640077 . 1 1530 0 -chrXII 638548 640078 HC_gene_5925_tx_416 1 + 638548 640078 . 1 1531 0 -chrXII 638548 640081 HC_gene_5925_tx_417 2 + 638548 640081 . 1 1534 0 -chrXII 638548 640085 HC_gene_5925_tx_418 7 + 638548 640085 . 1 1538 0 -chrXII 638548 640087 HC_gene_5925_tx_419 4 + 638548 640087 . 1 1540 0 -chrXII 638647 640000 HC_gene_5925_tx_420 2 + 638647 640000 . 1 1354 0 -chrXII 638647 640005 HC_gene_5925_tx_421 1 + 638647 640005 . 1 1359 0 -chrXII 638647 640006 HC_gene_5925_tx_422 1 + 638647 640006 . 1 1360 0 -chrXII 638647 640010 HC_gene_5925_tx_423 1 + 638647 640010 . 1 1364 0 -chrXII 638647 640011 HC_gene_5925_tx_424 3 + 638647 640011 . 1 1365 0 -chrXII 638647 640012 HC_gene_5925_tx_425 2 + 638647 640012 . 1 1366 0 -chrXII 638647 640015 HC_gene_5925_tx_426 1 + 638647 640015 . 1 1369 0 -chrXII 638647 640016 HC_gene_5925_tx_427 1 + 638647 640016 . 1 1370 0 -chrXII 638647 640018 HC_gene_5925_tx_428 2 + 638647 640018 . 1 1372 0 -chrXII 638647 640019 HC_gene_5925_tx_429 3 + 638647 640019 . 1 1373 0 -chrXII 638647 640020 HC_gene_5925_tx_430 2 + 638647 640020 . 1 1374 0 -chrXII 638647 640021 HC_gene_5925_tx_431 8 + 638647 640021 . 1 1375 0 -chrXII 638647 640022 HC_gene_5925_tx_432 1 + 638647 640022 . 1 1376 0 -chrXII 638647 640023 HC_gene_5925_tx_433 3 + 638647 640023 . 1 1377 0 -chrXII 638647 640024 HC_gene_5925_tx_434 1 + 638647 640024 . 1 1378 0 -chrXII 638647 640028 HC_gene_5925_tx_435 1 + 638647 640028 . 1 1382 0 -chrXII 638647 640029 HC_gene_5925_tx_436 3 + 638647 640029 . 1 1383 0 -chrXII 638647 640030 HC_gene_5925_tx_437 11 + 638647 640030 . 1 1384 0 -chrXII 638647 640030 HC_gene_5925_tx_438 1 + 638647 640030 . 2 1264,67 0,1317 -chrXII 638647 640031 HC_gene_5925_tx_439 1 + 638647 640031 . 1 1385 0 -chrXII 638647 640032 HC_gene_5925_tx_440 4 + 638647 640032 . 1 1386 0 -chrXII 638647 640033 HC_gene_5925_tx_441 2 + 638647 640033 . 1 1387 0 -chrXII 638647 640034 HC_gene_5925_tx_442 3 + 638647 640034 . 1 1388 0 -chrXII 638647 640036 HC_gene_5925_tx_443 3 + 638647 640036 . 1 1390 0 -chrXII 638647 640037 HC_gene_5925_tx_444 1 + 638647 640037 . 1 1391 0 -chrXII 638647 640039 HC_gene_5925_tx_445 3 + 638647 640039 . 1 1393 0 -chrXII 638647 640040 HC_gene_5925_tx_446 4 + 638647 640040 . 1 1394 0 -chrXII 638647 640041 HC_gene_5925_tx_447 1 + 638647 640041 . 1 1395 0 -chrXII 638647 640042 HC_gene_5925_tx_448 2 + 638647 640042 . 1 1396 0 -chrXII 638647 640045 HC_gene_5925_tx_449 1 + 638647 640045 . 1 1399 0 -chrXII 638647 640046 HC_gene_5925_tx_450 5 + 638647 640046 . 1 1400 0 -chrXII 638647 640047 HC_gene_5925_tx_451 2 + 638647 640047 . 1 1401 0 -chrXII 638647 640050 HC_gene_5925_tx_452 2 + 638647 640050 . 1 1404 0 -chrXII 638647 640055 HC_gene_5925_tx_453 1 + 638647 640055 . 1 1409 0 -chrXII 638647 640058 HC_gene_5925_tx_454 1 + 638647 640058 . 1 1412 0 -chrXII 638647 640059 HC_gene_5925_tx_455 1 + 638647 640059 . 1 1413 0 -chrXII 638647 640061 HC_gene_5925_tx_456 1 + 638647 640061 . 1 1415 0 -chrXII 638647 640062 HC_gene_5925_tx_457 2 + 638647 640062 . 1 1416 0 -chrXII 638647 640063 HC_gene_5925_tx_458 3 + 638647 640063 . 1 1417 0 -chrXII 638647 640064 HC_gene_5925_tx_459 3 + 638647 640064 . 1 1418 0 -chrXII 638647 640066 HC_gene_5925_tx_460 1 + 638647 640066 . 1 1420 0 -chrXII 638647 640067 HC_gene_5925_tx_461 2 + 638647 640067 . 1 1421 0 -chrXII 638647 640068 HC_gene_5925_tx_462 10 + 638647 640068 . 1 1422 0 -chrXII 638647 640069 HC_gene_5925_tx_463 5 + 638647 640069 . 1 1423 0 -chrXII 638647 640070 HC_gene_5925_tx_464 1 + 638647 640070 . 1 1424 0 -chrXII 638647 640076 HC_gene_5925_tx_465 3 + 638647 640076 . 1 1430 0 -chrXII 638647 640077 HC_gene_5925_tx_466 1 + 638647 640077 . 1 1431 0 -chrXII 638647 640078 HC_gene_5925_tx_467 3 + 638647 640078 . 1 1432 0 -chrXII 638647 640079 HC_gene_5925_tx_468 5 + 638647 640079 . 1 1433 0 -chrXII 638647 640080 HC_gene_5925_tx_469 1 + 638647 640080 . 1 1434 0 -chrXII 638647 640081 HC_gene_5925_tx_470 6 + 638647 640081 . 1 1435 0 -chrXII 638647 640082 HC_gene_5925_tx_471 4 + 638647 640082 . 1 1436 0 -chrXII 638647 640085 HC_gene_5925_tx_472 8 + 638647 640085 . 1 1439 0 -chrXII 638647 640087 HC_gene_5925_tx_473 1 + 638647 640087 . 1 1441 0 -chrXII 638754 640000 HC_gene_5925_tx_474 4 + 638754 640000 . 1 1247 0 -chrXII 638754 640001 HC_gene_5925_tx_475 2 + 638754 640001 . 1 1248 0 -chrXII 638754 640002 HC_gene_5925_tx_476 1 + 638754 640002 . 1 1249 0 -chrXII 638754 640003 HC_gene_5925_tx_477 1 + 638754 640003 . 1 1250 0 -chrXII 638754 640004 HC_gene_5925_tx_478 1 + 638754 640004 . 1 1251 0 -chrXII 638754 640005 HC_gene_5925_tx_479 2 + 638754 640005 . 1 1252 0 -chrXII 638754 640006 HC_gene_5925_tx_480 1 + 638754 640006 . 1 1253 0 -chrXII 638754 640007 HC_gene_5925_tx_481 4 + 638754 640007 . 1 1254 0 -chrXII 638754 640009 HC_gene_5925_tx_482 1 + 638754 640009 . 1 1256 0 -chrXII 638754 640010 HC_gene_5925_tx_483 1 + 638754 640010 . 1 1257 0 -chrXII 638754 640011 HC_gene_5925_tx_484 2 + 638754 640011 . 1 1258 0 -chrXII 638754 640014 HC_gene_5925_tx_485 1 + 638754 640014 . 1 1261 0 -chrXII 638754 640017 HC_gene_5925_tx_486 2 + 638754 640017 . 1 1264 0 -chrXII 638754 640018 HC_gene_5925_tx_487 1 + 638754 640018 . 1 1265 0 -chrXII 638754 640019 HC_gene_5925_tx_488 7 + 638754 640019 . 1 1266 0 -chrXII 638754 640020 HC_gene_5925_tx_489 1 + 638754 640020 . 1 1267 0 -chrXII 638754 640021 HC_gene_5925_tx_490 9 + 638754 640021 . 1 1268 0 -chrXII 638754 640022 HC_gene_5925_tx_491 2 + 638754 640022 . 1 1269 0 -chrXII 638754 640023 HC_gene_5925_tx_492 2 + 638754 640023 . 1 1270 0 -chrXII 638754 640026 HC_gene_5925_tx_493 1 + 638754 640026 . 1 1273 0 -chrXII 638754 640027 HC_gene_5925_tx_494 1 + 638754 640027 . 1 1274 0 -chrXII 638754 640028 HC_gene_5925_tx_495 1 + 638754 640028 . 1 1275 0 -chrXII 638754 640029 HC_gene_5925_tx_496 5 + 638754 640029 . 1 1276 0 -chrXII 638754 640030 HC_gene_5925_tx_497 16 + 638754 640030 . 1 1277 0 -chrXII 638754 640031 HC_gene_5925_tx_498 3 + 638754 640031 . 1 1278 0 -chrXII 638754 640031 HC_gene_5925_tx_499 1 + 638754 640031 . 2 793,175 0,1103 -chrXII 638754 640033 HC_gene_5925_tx_500 3 + 638754 640033 . 1 1280 0 -chrXII 638754 640034 HC_gene_5925_tx_501 2 + 638754 640034 . 1 1281 0 -chrXII 638754 640036 HC_gene_5925_tx_502 7 + 638754 640036 . 1 1283 0 -chrXII 638754 640039 HC_gene_5925_tx_503 2 + 638754 640039 . 1 1286 0 -chrXII 638754 640040 HC_gene_5925_tx_504 1 + 638754 640040 . 1 1287 0 -chrXII 638754 640041 HC_gene_5925_tx_505 1 + 638754 640041 . 1 1288 0 -chrXII 638754 640042 HC_gene_5925_tx_506 4 + 638754 640042 . 1 1289 0 -chrXII 638754 640045 HC_gene_5925_tx_507 1 + 638754 640045 . 1 1292 0 -chrXII 638754 640046 HC_gene_5925_tx_508 11 + 638754 640046 . 1 1293 0 -chrXII 638754 640047 HC_gene_5925_tx_509 1 + 638754 640047 . 1 1294 0 -chrXII 638754 640048 HC_gene_5925_tx_510 1 + 638754 640048 . 1 1295 0 -chrXII 638754 640049 HC_gene_5925_tx_511 2 + 638754 640049 . 1 1296 0 -chrXII 638754 640050 HC_gene_5925_tx_512 3 + 638754 640050 . 1 1297 0 -chrXII 638754 640052 HC_gene_5925_tx_513 1 + 638754 640052 . 1 1299 0 -chrXII 638754 640055 HC_gene_5925_tx_514 1 + 638754 640055 . 1 1302 0 -chrXII 638754 640055 HC_gene_5925_tx_515 1 + 638754 640055 . 2 1144,37 0,1265 -chrXII 638754 640057 HC_gene_5925_tx_516 2 + 638754 640057 . 1 1304 0 -chrXII 638754 640058 HC_gene_5925_tx_517 1 + 638754 640058 . 1 1305 0 -chrXII 638754 640061 HC_gene_5925_tx_518 1 + 638754 640061 . 1 1308 0 -chrXII 638754 640063 HC_gene_5925_tx_519 2 + 638754 640063 . 1 1310 0 -chrXII 638754 640064 HC_gene_5925_tx_520 4 + 638754 640064 . 1 1311 0 -chrXII 638754 640065 HC_gene_5925_tx_521 1 + 638754 640065 . 1 1312 0 -chrXII 638754 640067 HC_gene_5925_tx_522 4 + 638754 640067 . 1 1314 0 -chrXII 638754 640068 HC_gene_5925_tx_523 3 + 638754 640068 . 1 1315 0 -chrXII 638754 640069 HC_gene_5925_tx_524 2 + 638754 640069 . 1 1316 0 -chrXII 638754 640070 HC_gene_5925_tx_525 1 + 638754 640070 . 1 1317 0 -chrXII 638754 640076 HC_gene_5925_tx_526 1 + 638754 640076 . 1 1323 0 -chrXII 638754 640077 HC_gene_5925_tx_527 3 + 638754 640077 . 1 1324 0 -chrXII 638754 640078 HC_gene_5925_tx_528 1 + 638754 640078 . 1 1325 0 -chrXII 638754 640079 HC_gene_5925_tx_529 3 + 638754 640079 . 1 1326 0 -chrXII 638754 640080 HC_gene_5925_tx_530 1 + 638754 640080 . 1 1327 0 -chrXII 638754 640081 HC_gene_5925_tx_531 3 + 638754 640081 . 1 1328 0 -chrXII 638754 640082 HC_gene_5925_tx_532 1 + 638754 640082 . 1 1329 0 -chrXII 638754 640083 HC_gene_5925_tx_533 2 + 638754 640083 . 1 1330 0 -chrXII 638754 640085 HC_gene_5925_tx_534 12 + 638754 640085 . 1 1332 0 -chrXII 638754 640087 HC_gene_5925_tx_535 5 + 638754 640087 . 1 1334 0 -chrXII 638895 640000 HC_gene_5925_tx_536 3 + 638895 640000 . 1 1106 0 -chrXII 638895 640001 HC_gene_5925_tx_537 2 + 638895 640001 . 1 1107 0 -chrXII 638895 640004 HC_gene_5925_tx_538 1 + 638895 640004 . 1 1110 0 -chrXII 638895 640005 HC_gene_5925_tx_539 3 + 638895 640005 . 1 1111 0 -chrXII 638895 640006 HC_gene_5925_tx_540 1 + 638895 640006 . 1 1112 0 -chrXII 638895 640007 HC_gene_5925_tx_541 3 + 638895 640007 . 1 1113 0 -chrXII 638895 640008 HC_gene_5925_tx_542 4 + 638895 640008 . 1 1114 0 -chrXII 638895 640009 HC_gene_5925_tx_543 4 + 638895 640009 . 1 1115 0 -chrXII 638895 640010 HC_gene_5925_tx_544 1 + 638895 640010 . 1 1116 0 -chrXII 638895 640011 HC_gene_5925_tx_545 5 + 638895 640011 . 1 1117 0 -chrXII 638895 640015 HC_gene_5925_tx_546 1 + 638895 640015 . 1 1121 0 -chrXII 638895 640017 HC_gene_5925_tx_547 2 + 638895 640017 . 1 1123 0 -chrXII 638895 640018 HC_gene_5925_tx_548 3 + 638895 640018 . 1 1124 0 -chrXII 638895 640019 HC_gene_5925_tx_549 15 + 638895 640019 . 1 1125 0 -chrXII 638895 640021 HC_gene_5925_tx_550 10 + 638895 640021 . 1 1127 0 -chrXII 638895 640022 HC_gene_5925_tx_551 1 + 638895 640022 . 1 1128 0 -chrXII 638895 640023 HC_gene_5925_tx_552 1 + 638895 640023 . 1 1129 0 -chrXII 638895 640026 HC_gene_5925_tx_553 2 + 638895 640026 . 1 1132 0 -chrXII 638895 640028 HC_gene_5925_tx_554 7 + 638895 640028 . 1 1134 0 -chrXII 638895 640029 HC_gene_5925_tx_555 4 + 638895 640029 . 1 1135 0 -chrXII 638895 640030 HC_gene_5925_tx_556 25 + 638895 640030 . 1 1136 0 -chrXII 638895 640031 HC_gene_5925_tx_557 3 + 638895 640031 . 1 1137 0 -chrXII 638895 640032 HC_gene_5925_tx_558 4 + 638895 640032 . 1 1138 0 -chrXII 638895 640033 HC_gene_5925_tx_559 3 + 638895 640033 . 1 1139 0 -chrXII 638895 640034 HC_gene_5925_tx_560 2 + 638895 640034 . 1 1140 0 -chrXII 638895 640035 HC_gene_5925_tx_561 1 + 638895 640035 . 1 1141 0 -chrXII 638895 640036 HC_gene_5925_tx_562 9 + 638895 640036 . 1 1142 0 -chrXII 638895 640037 HC_gene_5925_tx_563 1 + 638895 640037 . 1 1143 0 -chrXII 638895 640039 HC_gene_5925_tx_564 2 + 638895 640039 . 1 1145 0 -chrXII 638895 640040 HC_gene_5925_tx_565 1 + 638895 640040 . 2 1003,44 0,1102 -chrXII 638895 640040 HC_gene_5925_tx_566 3 + 638895 640040 . 1 1146 0 -chrXII 638895 640042 HC_gene_5925_tx_567 3 + 638895 640042 . 1 1148 0 -chrXII 638895 640043 HC_gene_5925_tx_568 2 + 638895 640043 . 1 1149 0 -chrXII 638895 640044 HC_gene_5925_tx_569 1 + 638895 640044 . 1 1150 0 -chrXII 638895 640045 HC_gene_5925_tx_570 1 + 638895 640045 . 1 1151 0 -chrXII 638895 640046 HC_gene_5925_tx_571 14 + 638895 640046 . 1 1152 0 -chrXII 638895 640047 HC_gene_5925_tx_572 1 + 638895 640047 . 1 1153 0 -chrXII 638895 640047 HC_gene_5925_tx_573 1 + 638895 640047 . 2 985,60 0,1093 -chrXII 638895 640049 HC_gene_5925_tx_574 2 + 638895 640049 . 1 1155 0 -chrXII 638895 640050 HC_gene_5925_tx_575 5 + 638895 640050 . 1 1156 0 -chrXII 638895 640053 HC_gene_5925_tx_576 4 + 638895 640053 . 1 1159 0 -chrXII 638895 640054 HC_gene_5925_tx_577 1 + 638895 640054 . 1 1160 0 -chrXII 638895 640056 HC_gene_5925_tx_578 3 + 638895 640056 . 1 1162 0 -chrXII 638895 640057 HC_gene_5925_tx_579 1 + 638895 640057 . 1 1163 0 -chrXII 638895 640058 HC_gene_5925_tx_580 3 + 638895 640058 . 1 1164 0 -chrXII 638895 640058 HC_gene_5925_tx_581 1 + 638895 640058 . 2 1016,72 0,1092 -chrXII 638895 640059 HC_gene_5925_tx_582 3 + 638895 640059 . 1 1165 0 -chrXII 638895 640062 HC_gene_5925_tx_583 2 + 638895 640062 . 1 1168 0 -chrXII 638895 640062 HC_gene_5925_tx_584 1 + 638895 640062 . 2 1016,66 0,1102 -chrXII 638895 640063 HC_gene_5925_tx_585 7 + 638895 640063 . 1 1169 0 -chrXII 638895 640064 HC_gene_5925_tx_586 11 + 638895 640064 . 1 1170 0 -chrXII 638895 640065 HC_gene_5925_tx_587 1 + 638895 640065 . 1 1171 0 -chrXII 638895 640066 HC_gene_5925_tx_588 2 + 638895 640066 . 1 1172 0 -chrXII 638895 640067 HC_gene_5925_tx_589 2 + 638895 640067 . 1 1173 0 -chrXII 638895 640068 HC_gene_5925_tx_590 10 + 638895 640068 . 1 1174 0 -chrXII 638895 640069 HC_gene_5925_tx_591 5 + 638895 640069 . 1 1175 0 -chrXII 638895 640070 HC_gene_5925_tx_592 1 + 638895 640070 . 1 1176 0 -chrXII 638895 640075 HC_gene_5925_tx_593 1 + 638895 640075 . 1 1181 0 -chrXII 638895 640076 HC_gene_5925_tx_594 4 + 638895 640076 . 1 1182 0 -chrXII 638895 640077 HC_gene_5925_tx_595 6 + 638895 640077 . 1 1183 0 -chrXII 638895 640078 HC_gene_5925_tx_596 6 + 638895 640078 . 1 1184 0 -chrXII 638895 640079 HC_gene_5925_tx_597 3 + 638895 640079 . 1 1185 0 -chrXII 638895 640080 HC_gene_5925_tx_598 3 + 638895 640080 . 1 1186 0 -chrXII 638895 640081 HC_gene_5925_tx_599 5 + 638895 640081 . 1 1187 0 -chrXII 638895 640085 HC_gene_5925_tx_600 21 + 638895 640085 . 1 1191 0 -chrXII 638895 640087 HC_gene_5925_tx_601 3 + 638895 640087 . 1 1193 0 -chrXII 639067 640000 HC_gene_5925_tx_602 2 + 639067 640000 . 1 934 0 -chrXII 639067 640003 HC_gene_5925_tx_603 1 + 639067 640003 . 1 937 0 -chrXII 639067 640008 HC_gene_5925_tx_604 2 + 639067 640008 . 1 942 0 -chrXII 639067 640009 HC_gene_5925_tx_605 1 + 639067 640009 . 2 788,52 0,891 -chrXII 639067 640009 HC_gene_5925_tx_606 1 + 639067 640009 . 1 943 0 -chrXII 639067 640010 HC_gene_5925_tx_607 2 + 639067 640010 . 1 944 0 -chrXII 639067 640010 HC_gene_5925_tx_608 1 + 639067 640010 . 2 294,593 0,351 -chrXII 639067 640011 HC_gene_5925_tx_609 2 + 639067 640011 . 1 945 0 -chrXII 639067 640012 HC_gene_5925_tx_610 3 + 639067 640012 . 1 946 0 -chrXII 639067 640017 HC_gene_5925_tx_611 1 + 639067 640017 . 1 951 0 -chrXII 639067 640019 HC_gene_5925_tx_612 4 + 639067 640019 . 1 953 0 -chrXII 639067 640020 HC_gene_5925_tx_613 1 + 639067 640020 . 1 954 0 -chrXII 639067 640021 HC_gene_5925_tx_614 5 + 639067 640021 . 1 955 0 -chrXII 639067 640022 HC_gene_5925_tx_615 1 + 639067 640022 . 1 956 0 -chrXII 639067 640030 HC_gene_5925_tx_616 6 + 639067 640030 . 1 964 0 -chrXII 639067 640032 HC_gene_5925_tx_617 1 + 639067 640032 . 1 966 0 -chrXII 639067 640036 HC_gene_5925_tx_618 2 + 639067 640036 . 1 970 0 -chrXII 639067 640039 HC_gene_5925_tx_619 1 + 639067 640039 . 1 973 0 -chrXII 639067 640040 HC_gene_5925_tx_620 1 + 639067 640040 . 1 974 0 -chrXII 639067 640042 HC_gene_5925_tx_621 2 + 639067 640042 . 1 976 0 -chrXII 639067 640046 HC_gene_5925_tx_622 5 + 639067 640046 . 1 980 0 -chrXII 639067 640049 HC_gene_5925_tx_623 1 + 639067 640049 . 1 983 0 -chrXII 639067 640050 HC_gene_5925_tx_624 1 + 639067 640050 . 1 984 0 -chrXII 639067 640053 HC_gene_5925_tx_625 1 + 639067 640053 . 1 987 0 -chrXII 639067 640054 HC_gene_5925_tx_626 1 + 639067 640054 . 1 988 0 -chrXII 639067 640058 HC_gene_5925_tx_627 1 + 639067 640058 . 1 992 0 -chrXII 639067 640062 HC_gene_5925_tx_628 1 + 639067 640062 . 1 996 0 -chrXII 639067 640064 HC_gene_5925_tx_629 1 + 639067 640064 . 1 998 0 -chrXII 639067 640068 HC_gene_5925_tx_630 4 + 639067 640068 . 1 1002 0 -chrXII 639067 640069 HC_gene_5925_tx_631 1 + 639067 640069 . 1 1003 0 -chrXII 639067 640076 HC_gene_5925_tx_632 1 + 639067 640076 . 1 1010 0 -chrXII 639067 640077 HC_gene_5925_tx_633 3 + 639067 640077 . 1 1011 0 -chrXII 639067 640078 HC_gene_5925_tx_634 1 + 639067 640078 . 2 153,774 0,238 -chrXII 639067 640078 HC_gene_5925_tx_635 1 + 639067 640078 . 1 1012 0 -chrXII 639067 640079 HC_gene_5925_tx_636 4 + 639067 640079 . 1 1013 0 -chrXII 639067 640080 HC_gene_5925_tx_637 2 + 639067 640080 . 1 1014 0 -chrXII 639067 640081 HC_gene_5925_tx_638 1 + 639067 640081 . 1 1015 0 -chrXII 639067 640085 HC_gene_5925_tx_639 9 + 639067 640085 . 1 1019 0 -chrXII 639067 640087 HC_gene_5925_tx_640 1 + 639067 640087 . 1 1021 0 -chrXII 639153 640000 HC_gene_5925_tx_641 4 + 639153 640000 . 1 848 0 -chrXII 639153 640001 HC_gene_5925_tx_642 1 + 639153 640001 . 1 849 0 -chrXII 639153 640005 HC_gene_5925_tx_643 3 + 639153 640005 . 1 853 0 -chrXII 639153 640005 HC_gene_5925_tx_644 1 + 639153 640005 . 2 262,542 0,311 -chrXII 639153 640006 HC_gene_5925_tx_645 2 + 639153 640006 . 1 854 0 -chrXII 639153 640007 HC_gene_5925_tx_646 4 + 639153 640007 . 1 855 0 -chrXII 639153 640010 HC_gene_5925_tx_647 1 + 639153 640010 . 1 858 0 -chrXII 639153 640011 HC_gene_5925_tx_648 3 + 639153 640011 . 1 859 0 -chrXII 639153 640012 HC_gene_5925_tx_649 2 + 639153 640012 . 1 860 0 -chrXII 639153 640014 HC_gene_5925_tx_650 1 + 639153 640014 . 1 862 0 -chrXII 639153 640017 HC_gene_5925_tx_651 1 + 639153 640017 . 1 865 0 -chrXII 639153 640018 HC_gene_5925_tx_652 3 + 639153 640018 . 1 866 0 -chrXII 639153 640019 HC_gene_5925_tx_653 5 + 639153 640019 . 1 867 0 -chrXII 639153 640021 HC_gene_5925_tx_654 10 + 639153 640021 . 1 869 0 -chrXII 639153 640022 HC_gene_5925_tx_655 1 + 639153 640022 . 1 870 0 -chrXII 639153 640024 HC_gene_5925_tx_656 1 + 639153 640024 . 1 872 0 -chrXII 639153 640026 HC_gene_5925_tx_657 1 + 639153 640026 . 1 874 0 -chrXII 639153 640028 HC_gene_5925_tx_658 3 + 639153 640028 . 1 876 0 -chrXII 639153 640029 HC_gene_5925_tx_659 4 + 639153 640029 . 1 877 0 -chrXII 639153 640030 HC_gene_5925_tx_660 21 + 639153 640030 . 1 878 0 -chrXII 639153 640031 HC_gene_5925_tx_661 3 + 639153 640031 . 1 879 0 -chrXII 639153 640032 HC_gene_5925_tx_662 3 + 639153 640032 . 1 880 0 -chrXII 639153 640033 HC_gene_5925_tx_663 4 + 639153 640033 . 1 881 0 -chrXII 639153 640034 HC_gene_5925_tx_664 3 + 639153 640034 . 1 882 0 -chrXII 639153 640035 HC_gene_5925_tx_665 1 + 639153 640035 . 1 883 0 -chrXII 639153 640036 HC_gene_5925_tx_666 3 + 639153 640036 . 1 884 0 -chrXII 639153 640037 HC_gene_5925_tx_667 2 + 639153 640037 . 1 885 0 -chrXII 639153 640040 HC_gene_5925_tx_668 9 + 639153 640040 . 1 888 0 -chrXII 639153 640042 HC_gene_5925_tx_669 5 + 639153 640042 . 1 890 0 -chrXII 639153 640043 HC_gene_5925_tx_670 1 + 639153 640043 . 1 891 0 -chrXII 639153 640045 HC_gene_5925_tx_671 3 + 639153 640045 . 1 893 0 -chrXII 639153 640046 HC_gene_5925_tx_672 7 + 639153 640046 . 1 894 0 -chrXII 639153 640047 HC_gene_5925_tx_673 1 + 639153 640047 . 1 895 0 -chrXII 639153 640049 HC_gene_5925_tx_674 1 + 639153 640049 . 1 897 0 -chrXII 639153 640050 HC_gene_5925_tx_675 2 + 639153 640050 . 1 898 0 -chrXII 639153 640052 HC_gene_5925_tx_676 1 + 639153 640052 . 1 900 0 -chrXII 639153 640054 HC_gene_5925_tx_677 1 + 639153 640054 . 1 902 0 -chrXII 639153 640055 HC_gene_5925_tx_678 1 + 639153 640055 . 1 903 0 -chrXII 639153 640056 HC_gene_5925_tx_679 1 + 639153 640056 . 1 904 0 -chrXII 639153 640058 HC_gene_5925_tx_680 3 + 639153 640058 . 1 906 0 -chrXII 639153 640059 HC_gene_5925_tx_681 1 + 639153 640059 . 1 907 0 -chrXII 639153 640061 HC_gene_5925_tx_682 2 + 639153 640061 . 1 909 0 -chrXII 639153 640063 HC_gene_5925_tx_683 3 + 639153 640063 . 1 911 0 -chrXII 639153 640064 HC_gene_5925_tx_684 7 + 639153 640064 . 1 912 0 -chrXII 639153 640066 HC_gene_5925_tx_685 2 + 639153 640066 . 1 914 0 -chrXII 639153 640068 HC_gene_5925_tx_686 7 + 639153 640068 . 1 916 0 -chrXII 639153 640069 HC_gene_5925_tx_687 1 + 639153 640069 . 1 917 0 -chrXII 639153 640077 HC_gene_5925_tx_688 1 + 639153 640077 . 1 925 0 -chrXII 639153 640078 HC_gene_5925_tx_689 3 + 639153 640078 . 1 926 0 -chrXII 639153 640079 HC_gene_5925_tx_690 5 + 639153 640079 . 1 927 0 -chrXII 639153 640081 HC_gene_5925_tx_691 2 + 639153 640081 . 1 929 0 -chrXII 639153 640084 HC_gene_5925_tx_692 1 + 639153 640084 . 1 932 0 -chrXII 639153 640085 HC_gene_5925_tx_693 16 + 639153 640085 . 1 933 0 -chrXII 639153 640087 HC_gene_5925_tx_694 2 + 639153 640087 . 1 935 0 -chrXII 639153 640087 HC_gene_5925_tx_695 1 + 639153 640087 . 2 745,132 0,803 -chrXII 639307 640000 HC_gene_5925_tx_696 5 + 639307 640000 . 1 694 0 -chrXII 639307 640001 HC_gene_5925_tx_697 1 + 639307 640001 . 1 695 0 -chrXII 639307 640003 HC_gene_5925_tx_698 1 + 639307 640003 . 1 697 0 -chrXII 639307 640004 HC_gene_5925_tx_699 2 + 639307 640004 . 1 698 0 -chrXII 639307 640005 HC_gene_5925_tx_700 4 + 639307 640005 . 1 699 0 -chrXII 639307 640006 HC_gene_5925_tx_701 1 + 639307 640006 . 1 700 0 -chrXII 639307 640007 HC_gene_5925_tx_702 2 + 639307 640007 . 1 701 0 -chrXII 639307 640008 HC_gene_5925_tx_703 2 + 639307 640008 . 1 702 0 -chrXII 639307 640009 HC_gene_5925_tx_704 2 + 639307 640009 . 1 703 0 -chrXII 639307 640010 HC_gene_5925_tx_705 3 + 639307 640010 . 1 704 0 -chrXII 639307 640011 HC_gene_5925_tx_706 2 + 639307 640011 . 1 705 0 -chrXII 639307 640012 HC_gene_5925_tx_707 2 + 639307 640012 . 1 706 0 -chrXII 639307 640014 HC_gene_5925_tx_708 1 + 639307 640014 . 1 708 0 -chrXII 639307 640017 HC_gene_5925_tx_709 1 + 639307 640017 . 1 711 0 -chrXII 639307 640018 HC_gene_5925_tx_710 2 + 639307 640018 . 1 712 0 -chrXII 639307 640019 HC_gene_5925_tx_711 14 + 639307 640019 . 1 713 0 -chrXII 639307 640020 HC_gene_5925_tx_712 2 + 639307 640020 . 1 714 0 -chrXII 639307 640021 HC_gene_5925_tx_713 18 + 639307 640021 . 1 715 0 -chrXII 639307 640022 HC_gene_5925_tx_714 2 + 639307 640022 . 1 716 0 -chrXII 639307 640023 HC_gene_5925_tx_715 3 + 639307 640023 . 1 717 0 -chrXII 639307 640024 HC_gene_5925_tx_716 1 + 639307 640024 . 1 718 0 -chrXII 639307 640026 HC_gene_5925_tx_717 1 + 639307 640026 . 1 720 0 -chrXII 639307 640028 HC_gene_5925_tx_718 7 + 639307 640028 . 1 722 0 -chrXII 639307 640029 HC_gene_5925_tx_719 5 + 639307 640029 . 1 723 0 -chrXII 639307 640030 HC_gene_5925_tx_720 28 + 639307 640030 . 1 724 0 -chrXII 639307 640031 HC_gene_5925_tx_721 3 + 639307 640031 . 1 725 0 -chrXII 639307 640032 HC_gene_5925_tx_722 8 + 639307 640032 . 1 726 0 -chrXII 639307 640033 HC_gene_5925_tx_723 2 + 639307 640033 . 1 727 0 -chrXII 639307 640034 HC_gene_5925_tx_724 1 + 639307 640034 . 1 728 0 -chrXII 639307 640036 HC_gene_5925_tx_725 10 + 639307 640036 . 1 730 0 -chrXII 639307 640037 HC_gene_5925_tx_726 2 + 639307 640037 . 1 731 0 -chrXII 639307 640039 HC_gene_5925_tx_727 5 + 639307 640039 . 1 733 0 -chrXII 639307 640040 HC_gene_5925_tx_728 10 + 639307 640040 . 1 734 0 -chrXII 639307 640041 HC_gene_5925_tx_729 2 + 639307 640041 . 1 735 0 -chrXII 639307 640042 HC_gene_5925_tx_730 6 + 639307 640042 . 1 736 0 -chrXII 639307 640043 HC_gene_5925_tx_731 1 + 639307 640043 . 1 737 0 -chrXII 639307 640044 HC_gene_5925_tx_732 1 + 639307 640044 . 1 738 0 -chrXII 639307 640045 HC_gene_5925_tx_733 7 + 639307 640045 . 1 739 0 -chrXII 639307 640046 HC_gene_5925_tx_734 20 + 639307 640046 . 1 740 0 -chrXII 639307 640049 HC_gene_5925_tx_735 2 + 639307 640049 . 1 743 0 -chrXII 639307 640050 HC_gene_5925_tx_736 9 + 639307 640050 . 1 744 0 -chrXII 639307 640052 HC_gene_5925_tx_737 1 + 639307 640052 . 1 746 0 -chrXII 639307 640054 HC_gene_5925_tx_738 1 + 639307 640054 . 1 748 0 -chrXII 639307 640055 HC_gene_5925_tx_739 2 + 639307 640055 . 1 749 0 -chrXII 639307 640057 HC_gene_5925_tx_740 1 + 639307 640057 . 1 751 0 -chrXII 639307 640058 HC_gene_5925_tx_741 4 + 639307 640058 . 1 752 0 -chrXII 639307 640059 HC_gene_5925_tx_742 1 + 639307 640059 . 1 753 0 -chrXII 639307 640062 HC_gene_5925_tx_743 2 + 639307 640062 . 1 756 0 -chrXII 639307 640063 HC_gene_5925_tx_744 12 + 639307 640063 . 1 757 0 -chrXII 639307 640064 HC_gene_5925_tx_745 8 + 639307 640064 . 1 758 0 -chrXII 639307 640065 HC_gene_5925_tx_746 1 + 639307 640065 . 1 759 0 -chrXII 639307 640066 HC_gene_5925_tx_747 1 + 639307 640066 . 1 760 0 -chrXII 639307 640067 HC_gene_5925_tx_748 3 + 639307 640067 . 1 761 0 -chrXII 639307 640068 HC_gene_5925_tx_749 12 + 639307 640068 . 1 762 0 -chrXII 639307 640069 HC_gene_5925_tx_750 6 + 639307 640069 . 1 763 0 -chrXII 639307 640076 HC_gene_5925_tx_751 2 + 639307 640076 . 1 770 0 -chrXII 639307 640077 HC_gene_5925_tx_752 1 + 639307 640077 . 1 771 0 -chrXII 639307 640078 HC_gene_5925_tx_753 3 + 639307 640078 . 1 772 0 -chrXII 639307 640079 HC_gene_5925_tx_754 3 + 639307 640079 . 1 773 0 -chrXII 639307 640080 HC_gene_5925_tx_755 2 + 639307 640080 . 1 774 0 -chrXII 639307 640081 HC_gene_5925_tx_756 7 + 639307 640081 . 1 775 0 -chrXII 639307 640082 HC_gene_5925_tx_757 2 + 639307 640082 . 1 776 0 -chrXII 639307 640083 HC_gene_5925_tx_758 1 + 639307 640083 . 1 777 0 -chrXII 639307 640084 HC_gene_5925_tx_759 1 + 639307 640084 . 1 778 0 -chrXII 639307 640085 HC_gene_5925_tx_760 23 + 639307 640085 . 1 779 0 -chrXII 639307 640087 HC_gene_5925_tx_761 3 + 639307 640087 . 1 781 0 -chrXII 639579 640000 HC_gene_5926_tx_1 25 + 639579 640000 . 1 422 0 -chrXII 639579 640001 HC_gene_5926_tx_2 12 + 639579 640001 . 1 423 0 -chrXII 639579 640002 HC_gene_5926_tx_3 7 + 639579 640002 . 1 424 0 -chrXII 639579 640004 HC_gene_5926_tx_4 12 + 639579 640004 . 1 426 0 -chrXII 639579 640005 HC_gene_5926_tx_5 5 + 639579 640005 . 1 427 0 -chrXII 639579 640006 HC_gene_5926_tx_6 6 + 639579 640006 . 1 428 0 -chrXII 639579 640007 HC_gene_5926_tx_7 11 + 639579 640007 . 1 429 0 -chrXII 639579 640008 HC_gene_5926_tx_8 6 + 639579 640008 . 1 430 0 -chrXII 639579 640009 HC_gene_5926_tx_9 16 + 639579 640009 . 1 431 0 -chrXII 639579 640010 HC_gene_5926_tx_10 3 + 639579 640010 . 1 432 0 -chrXII 639579 640011 HC_gene_5926_tx_11 12 + 639579 640011 . 1 433 0 -chrXII 639579 640012 HC_gene_5926_tx_12 11 + 639579 640012 . 1 434 0 -chrXII 639579 640014 HC_gene_5926_tx_13 3 + 639579 640014 . 1 436 0 -chrXII 639579 640015 HC_gene_5926_tx_14 4 + 639579 640015 . 1 437 0 -chrXII 639579 640016 HC_gene_5926_tx_15 3 + 639579 640016 . 1 438 0 -chrXII 639579 640017 HC_gene_5926_tx_16 2 + 639579 640017 . 1 439 0 -chrXII 639579 640018 HC_gene_5926_tx_17 13 + 639579 640018 . 1 440 0 -chrXII 639579 640019 HC_gene_5926_tx_18 43 + 639579 640019 . 1 441 0 -chrXII 639579 640020 HC_gene_5926_tx_19 5 + 639579 640020 . 1 442 0 -chrXII 639579 640021 HC_gene_5926_tx_20 69 + 639579 640021 . 1 443 0 -chrXII 639579 640021 HC_gene_5926_tx_21 1 + 639579 640021 . 2 307,40 0,403 -chrXII 639579 640022 HC_gene_5926_tx_22 7 + 639579 640022 . 1 444 0 -chrXII 639579 640023 HC_gene_5926_tx_23 7 + 639579 640023 . 1 445 0 -chrXII 639579 640024 HC_gene_5926_tx_24 1 + 639579 640024 . 1 446 0 -chrXII 639579 640025 HC_gene_5926_tx_25 1 + 639579 640025 . 1 447 0 -chrXII 639579 640026 HC_gene_5926_tx_26 2 + 639579 640026 . 1 448 0 -chrXII 639579 640027 HC_gene_5926_tx_27 3 + 639579 640027 . 1 449 0 -chrXII 639579 640028 HC_gene_5926_tx_28 18 + 639579 640028 . 1 450 0 -chrXII 639579 640029 HC_gene_5926_tx_29 12 + 639579 640029 . 1 451 0 -chrXII 639579 640030 HC_gene_5926_tx_30 114 + 639579 640030 . 1 452 0 -chrXII 639579 640031 HC_gene_5926_tx_31 4 + 639579 640031 . 1 453 0 -chrXII 639579 640032 HC_gene_5926_tx_32 17 + 639579 640032 . 1 454 0 -chrXII 639579 640033 HC_gene_5926_tx_33 11 + 639579 640033 . 1 455 0 -chrXII 639579 640034 HC_gene_5926_tx_34 9 + 639579 640034 . 1 456 0 -chrXII 639579 640035 HC_gene_5926_tx_35 3 + 639579 640035 . 1 457 0 -chrXII 639579 640036 HC_gene_5926_tx_36 16 + 639579 640036 . 1 458 0 -chrXII 639579 640037 HC_gene_5926_tx_37 5 + 639579 640037 . 1 459 0 -chrXII 639579 640038 HC_gene_5926_tx_38 1 + 639579 640038 . 1 460 0 -chrXII 639579 640039 HC_gene_5926_tx_39 15 + 639579 640039 . 1 461 0 -chrXII 639579 640040 HC_gene_5926_tx_40 19 + 639579 640040 . 1 462 0 -chrXII 639579 640041 HC_gene_5926_tx_41 6 + 639579 640041 . 1 463 0 -chrXII 639579 640042 HC_gene_5926_tx_42 27 + 639579 640042 . 1 464 0 -chrXII 639579 640043 HC_gene_5926_tx_43 4 + 639579 640043 . 1 465 0 -chrXII 639579 640044 HC_gene_5926_tx_44 1 + 639579 640044 . 1 466 0 -chrXII 639579 640045 HC_gene_5926_tx_45 14 + 639579 640045 . 1 467 0 -chrXII 639579 640046 HC_gene_5926_tx_46 83 + 639579 640046 . 1 468 0 -chrXII 639579 640047 HC_gene_5926_tx_47 3 + 639579 640047 . 1 469 0 -chrXII 639579 640048 HC_gene_5926_tx_48 1 + 639579 640048 . 1 470 0 -chrXII 639579 640049 HC_gene_5926_tx_49 1 + 639579 640049 . 1 471 0 -chrXII 639579 640050 HC_gene_5926_tx_50 19 + 639579 640050 . 1 472 0 -chrXII 639579 640051 HC_gene_5926_tx_51 3 + 639579 640051 . 1 473 0 -chrXII 639579 640052 HC_gene_5926_tx_52 4 + 639579 640052 . 1 474 0 -chrXII 639579 640053 HC_gene_5926_tx_53 1 + 639579 640053 . 1 475 0 -chrXII 639579 640054 HC_gene_5926_tx_54 3 + 639579 640054 . 1 476 0 -chrXII 639579 640055 HC_gene_5926_tx_55 2 + 639579 640055 . 1 477 0 -chrXII 639579 640056 HC_gene_5926_tx_56 6 + 639579 640056 . 1 478 0 -chrXII 639579 640057 HC_gene_5926_tx_57 5 + 639579 640057 . 1 479 0 -chrXII 639579 640058 HC_gene_5926_tx_58 6 + 639579 640058 . 1 480 0 -chrXII 639579 640059 HC_gene_5926_tx_59 6 + 639579 640059 . 1 481 0 -chrXII 639579 640061 HC_gene_5926_tx_60 8 + 639579 640061 . 1 483 0 -chrXII 639579 640062 HC_gene_5926_tx_61 7 + 639579 640062 . 1 484 0 -chrXII 639579 640063 HC_gene_5926_tx_62 42 + 639579 640063 . 1 485 0 -chrXII 639579 640064 HC_gene_5926_tx_63 27 + 639579 640064 . 1 486 0 -chrXII 639579 640065 HC_gene_5926_tx_64 3 + 639579 640065 . 1 487 0 -chrXII 639579 640066 HC_gene_5926_tx_65 7 + 639579 640066 . 1 488 0 -chrXII 639579 640067 HC_gene_5926_tx_66 10 + 639579 640067 . 1 489 0 -chrXII 639579 640068 HC_gene_5926_tx_67 48 + 639579 640068 . 1 490 0 -chrXII 639579 640069 HC_gene_5926_tx_68 22 + 639579 640069 . 1 491 0 -chrXII 639579 640070 HC_gene_5926_tx_69 7 + 639579 640070 . 1 492 0 -chrXII 639579 640075 HC_gene_5926_tx_70 3 + 639579 640075 . 1 497 0 -chrXII 639579 640076 HC_gene_5926_tx_71 4 + 639579 640076 . 1 498 0 -chrXII 639579 640077 HC_gene_5926_tx_72 2 + 639579 640077 . 1 499 0 -chrXII 639579 640078 HC_gene_5926_tx_73 12 + 639579 640078 . 1 500 0 -chrXII 639579 640079 HC_gene_5926_tx_74 17 + 639579 640079 . 1 501 0 -chrXII 639579 640080 HC_gene_5926_tx_75 15 + 639579 640080 . 1 502 0 -chrXII 639579 640081 HC_gene_5926_tx_76 21 + 639579 640081 . 1 503 0 -chrXII 639579 640082 HC_gene_5926_tx_77 13 + 639579 640082 . 1 504 0 -chrXII 639579 640083 HC_gene_5926_tx_78 5 + 639579 640083 . 1 505 0 -chrXII 639579 640084 HC_gene_5926_tx_79 1 + 639579 640084 . 1 506 0 -chrXII 639579 640085 HC_gene_5926_tx_80 84 + 639579 640085 . 1 507 0 -chrXII 639579 640087 HC_gene_5926_tx_81 23 + 639579 640087 . 1 509 0 -chrXII 639579 640087 HC_gene_5926_tx_82 1 + 639579 640087 . 2 301,149 0,360 -chrXII 639579 640089 HC_gene_5926_tx_83 1 + 639579 640089 . 1 511 0 -chrXII 639579 640206 HC_gene_5926_tx_84 1 + 639579 640206 . 1 628 0 -chrXII 640272 641130 HC_gene_5927_tx_1 2 + 640272 641130 . 1 859 0 -chrXII 640272 641131 HC_gene_5927_tx_2 1 + 640272 641131 . 1 860 0 -chrXII 640272 641132 HC_gene_5927_tx_3 2 + 640272 641132 . 1 861 0 -chrXII 640272 641133 HC_gene_5927_tx_4 3 + 640272 641133 . 1 862 0 -chrXII 640272 641134 HC_gene_5927_tx_5 1 + 640272 641134 . 1 863 0 -chrXII 640272 641135 HC_gene_5927_tx_6 1 + 640272 641135 . 1 864 0 -chrXII 640272 641136 HC_gene_5927_tx_7 1 + 640272 641136 . 1 865 0 -chrXII 640272 641137 HC_gene_5927_tx_8 1 + 640272 641137 . 1 866 0 -chrXII 640272 641138 HC_gene_5927_tx_9 1 + 640272 641138 . 1 867 0 -chrXII 640272 641142 HC_gene_5927_tx_10 1 + 640272 641142 . 1 871 0 -chrXII 640272 641145 HC_gene_5927_tx_11 3 + 640272 641145 . 1 874 0 -chrXII 640272 641146 HC_gene_5927_tx_12 1 + 640272 641146 . 1 875 0 -chrXII 640272 641149 HC_gene_5927_tx_13 3 + 640272 641149 . 1 878 0 -chrXII 640272 641150 HC_gene_5927_tx_14 4 + 640272 641150 . 1 879 0 -chrXII 640272 641151 HC_gene_5927_tx_15 2 + 640272 641151 . 1 880 0 -chrXII 640272 641154 HC_gene_5927_tx_16 1 + 640272 641154 . 1 883 0 -chrXII 640272 641156 HC_gene_5927_tx_17 1 + 640272 641156 . 1 885 0 -chrXII 640272 641158 HC_gene_5927_tx_18 1 + 640272 641158 . 1 887 0 -chrXII 640272 641161 HC_gene_5927_tx_19 3 + 640272 641161 . 1 890 0 -chrXII 640272 641164 HC_gene_5927_tx_20 2 + 640272 641164 . 1 893 0 -chrXII 640272 641165 HC_gene_5927_tx_21 16 + 640272 641165 . 1 894 0 -chrXII 640272 641166 HC_gene_5927_tx_22 2 + 640272 641166 . 1 895 0 -chrXII 640272 641168 HC_gene_5927_tx_23 1 + 640272 641168 . 1 897 0 -chrXII 640272 641169 HC_gene_5927_tx_24 5 + 640272 641169 . 1 898 0 -chrXII 640272 641170 HC_gene_5927_tx_25 1 + 640272 641170 . 1 899 0 -chrXII 640272 641172 HC_gene_5927_tx_26 2 + 640272 641172 . 1 901 0 -chrXII 640272 641173 HC_gene_5927_tx_27 2 + 640272 641173 . 1 902 0 -chrXII 640272 641175 HC_gene_5927_tx_28 1 + 640272 641175 . 1 904 0 -chrXII 640272 641178 HC_gene_5927_tx_29 1 + 640272 641178 . 1 907 0 -chrXII 640272 641179 HC_gene_5927_tx_30 4 + 640272 641179 . 1 908 0 -chrXII 640272 641180 HC_gene_5927_tx_31 1 + 640272 641180 . 1 909 0 -chrXII 640272 641182 HC_gene_5927_tx_32 2 + 640272 641182 . 1 911 0 -chrXII 640272 641184 HC_gene_5927_tx_33 4 + 640272 641184 . 1 913 0 -chrXII 640272 641187 HC_gene_5927_tx_34 2 + 640272 641187 . 1 916 0 -chrXII 640272 641189 HC_gene_5927_tx_35 1 + 640272 641189 . 1 918 0 -chrXII 640272 641190 HC_gene_5927_tx_36 1 + 640272 641190 . 1 919 0 -chrXII 640272 641193 HC_gene_5927_tx_37 2 + 640272 641193 . 1 922 0 -chrXII 640272 641195 HC_gene_5927_tx_38 1 + 640272 641195 . 1 924 0 -chrXII 640272 641197 HC_gene_5927_tx_39 3 + 640272 641197 . 1 926 0 -chrXII 640272 641198 HC_gene_5927_tx_40 1 + 640272 641198 . 1 927 0 -chrXII 640272 641201 HC_gene_5927_tx_41 6 + 640272 641201 . 1 930 0 -chrXII 640272 641202 HC_gene_5927_tx_42 2 + 640272 641202 . 1 931 0 -chrXII 640272 641203 HC_gene_5927_tx_43 3 + 640272 641203 . 1 932 0 -chrXII 640272 641254 HC_gene_5927_tx_44 1 + 640272 641254 . 1 983 0 -chrXII 640440 641154 HC_gene_5927_tx_45 1 + 640440 641154 . 1 715 0 -chrXII 640440 641155 HC_gene_5927_tx_46 1 + 640440 641155 . 1 716 0 -chrXII 640440 641165 HC_gene_5927_tx_47 1 + 640440 641165 . 1 726 0 -chrXII 640440 641190 HC_gene_5927_tx_48 1 + 640440 641190 . 1 751 0 -chrXII 640586 641132 HC_gene_5927_tx_49 1 + 640586 641132 . 1 547 0 -chrXII 640586 641137 HC_gene_5927_tx_50 1 + 640586 641137 . 1 552 0 -chrXII 640586 641145 HC_gene_5927_tx_51 1 + 640586 641145 . 1 560 0 -chrXII 640586 641150 HC_gene_5927_tx_52 1 + 640586 641150 . 1 565 0 -chrXII 640586 641161 HC_gene_5927_tx_53 1 + 640586 641161 . 1 576 0 -chrXII 640586 641165 HC_gene_5927_tx_54 4 + 640586 641165 . 1 580 0 -chrXII 640586 641170 HC_gene_5927_tx_55 1 + 640586 641170 . 1 585 0 -chrXII 640586 641192 HC_gene_5927_tx_56 1 + 640586 641192 . 1 607 0 -chrXII 640586 641198 HC_gene_5927_tx_57 1 + 640586 641198 . 1 613 0 -chrXII 640762 641131 HC_gene_5927_tx_58 1 + 640762 641131 . 1 370 0 -chrXII 640762 641136 HC_gene_5927_tx_59 3 + 640762 641136 . 1 375 0 -chrXII 640762 641154 HC_gene_5927_tx_60 1 + 640762 641154 . 1 393 0 -chrXII 640762 641161 HC_gene_5927_tx_61 1 + 640762 641161 . 1 400 0 -chrXII 640762 641162 HC_gene_5927_tx_62 2 + 640762 641162 . 1 401 0 -chrXII 640762 641165 HC_gene_5927_tx_63 3 + 640762 641165 . 1 404 0 -chrXII 640762 641174 HC_gene_5927_tx_64 1 + 640762 641174 . 1 413 0 -chrXII 640762 641195 HC_gene_5927_tx_65 1 + 640762 641195 . 1 434 0 -chrXII 640762 641197 HC_gene_5927_tx_66 1 + 640762 641197 . 1 436 0 -chrXII 640762 641198 HC_gene_5927_tx_67 1 + 640762 641198 . 1 437 0 -chrXII 641272 641626 MC_gene_6336_tx_1 1 - 641272 641626 . 1 355 0 -chrXII 641366 642320 HC_gene_5928_tx_1 18 + 641366 642320 . 1 955 0 -chrXII 641366 642439 HC_gene_5928_tx_2 3 + 641366 642439 . 1 1074 0 -chrXII 641629 642439 HC_gene_5928_tx_3 4 + 641629 642439 . 1 811 0 -chrXII 641944 642339 HC_gene_6337_tx_1 1 - 641944 642339 . 1 396 0 -chrXII 642553 644429 HC_gene_5929_tx_1 20 + 642553 644429 . 1 1877 0 -chrXII 642553 644429 HC_gene_5929_tx_2 1 + 642553 644429 . 2 992,807 0,1070 -chrXII 644189 644815 HC_gene_6338_tx_1 1 - 644189 644815 . 1 627 0 -chrXII 644189 645072 HC_gene_6338_tx_2 2 - 644189 645072 . 1 884 0 -chrXII 644325 644815 HC_gene_6338_tx_8 17 - 644325 644815 . 1 491 0 -chrXII 644325 644944 HC_gene_6338_tx_3 2 - 644325 644944 . 1 620 0 -chrXII 644325 645072 HC_gene_6338_tx_4 68 - 644325 645072 . 1 748 0 -chrXII 644325 645072 HC_gene_6338_tx_5 1 - 644325 645072 . 2 73,605 0,143 -chrXII 644325 645210 HC_gene_6338_tx_6 1 - 644325 645210 . 1 886 0 -chrXII 644325 645415 HC_gene_6338_tx_7 3 - 644325 645415 . 1 1091 0 -chrXII 644325 645749 HC_gene_6338_tx_9 2 - 644325 645749 . 1 1425 0 -chrXII 645323 645883 MC_gene_5930_tx_1 1 + 645323 645883 . 1 561 0 -chrXII 646127 648363 HC_gene_5931_tx_1 1 + 646127 648363 . 1 2237 0 -chrXII 647696 648363 HC_gene_5931_tx_2 2 + 647696 648363 . 1 668 0 -chrXII 649296 650789 HC_gene_6339_tx_1 2 - 649296 650789 . 1 1494 0 -chrXII 649732 650726 HC_gene_6339_tx_2 3 - 649732 650726 . 1 995 0 -chrXII 649732 650789 HC_gene_6339_tx_3 7 - 649732 650789 . 1 1058 0 -chrXII 650089 650726 HC_gene_6339_tx_4 2 - 650089 650726 . 1 638 0 -chrXII 650089 650789 HC_gene_6339_tx_5 12 - 650089 650789 . 1 701 0 -chrXII 650099 651162 HC_gene_5932_tx_1 1 + 650099 651162 . 1 1064 0 -chrXII 650191 650726 HC_gene_6339_tx_6 1 - 650191 650726 . 1 536 0 -chrXII 650191 650789 HC_gene_6339_tx_7 10 - 650191 650789 . 1 599 0 -chrXII 650333 651162 HC_gene_5932_tx_2 4 + 650333 651162 . 1 830 0 -chrXII 653226 656838 HC_gene_5933_tx_1 1 + 653226 656838 . 1 3613 0 -chrXII 656783 656965 MC_gene_6340_tx_1 1 - 656783 656965 . 1 183 0 -chrXII 656906 657296 MC_gene_5934_tx_1 1 + 656906 657296 . 1 391 0 -chrXII 657058 657533 HC_gene_6341_tx_1 2 - 657058 657533 . 1 476 0 -chrXII 657058 657817 HC_gene_6341_tx_3 34 - 657058 657817 . 1 760 0 -chrXII 657058 658252 HC_gene_6341_tx_6 1 - 657058 658252 . 1 1195 0 -chrXII 657118 657533 HC_gene_6341_tx_2 1 - 657118 657533 . 1 416 0 -chrXII 657118 657817 HC_gene_6341_tx_4 1 - 657118 657817 . 1 700 0 -chrXII 657209 657533 HC_gene_6341_tx_7 2 - 657209 657533 . 1 325 0 -chrXII 657209 657817 HC_gene_6341_tx_5 9 - 657209 657817 . 1 609 0 -chrXII 657209 658053 HC_gene_6341_tx_8 1 - 657209 658053 . 1 845 0 -chrXII 657327 657740 HC_gene_5935_tx_1 13 + 657327 657740 . 1 414 0 -chrXII 657327 657925 HC_gene_5935_tx_2 4 + 657327 657925 . 1 599 0 -chrXII 657538 657817 HC_gene_6341_tx_9 1 - 657538 657817 . 1 280 0 -chrXII 658472 658678 HC_gene_5936_tx_1 1 + 658472 658678 . 1 207 0 -chrXII 658486 658579 HC_gene_5936_tx_2 1 + 658486 658579 . 1 94 0 -chrXII 658486 658736 HC_gene_5936_tx_3 1 + 658486 658736 . 1 251 0 -chrXII 658666 659526 LC_gene_6342_tx_1 1 - 658666 659526 . 1 861 0 -chrXII 659054 659889 HC_gene_5937_tx_1 34 + 659054 659889 . 1 836 0 -chrXII 659197 659889 HC_gene_5937_tx_2 27 + 659197 659889 . 1 693 0 -chrXII 659409 659889 HC_gene_5937_tx_3 227 + 659409 659889 . 1 481 0 -chrXII 659705 660219 MC_gene_6343_tx_1 1 - 659705 660219 . 1 515 0 -chrXII 659770 661407 MC_gene_6344_tx_1 1 - 659770 661407 . 1 1638 0 -chrXII 660150 661242 MC_gene_6344_tx_2 1 - 660150 661242 . 1 1093 0 -chrXII 660648 663212 HC_gene_5938_tx_1 38 + 660648 663212 . 1 2565 0 -chrXII 660804 663212 HC_gene_5938_tx_2 4 + 660804 663212 . 1 2409 0 -chrXII 660804 663212 HC_gene_5938_tx_3 1 + 660804 663212 . 2 1560,777 0,1632 -chrXII 660975 663212 HC_gene_5938_tx_4 3 + 660975 663212 . 1 2238 0 -chrXII 661426 663212 HC_gene_5938_tx_5 6 + 661426 663212 . 1 1787 0 -chrXII 661844 663001 HC_gene_5938_tx_6 1 + 661844 663001 . 1 1158 0 -chrXII 661844 663212 HC_gene_5938_tx_7 8 + 661844 663212 . 1 1369 0 -chrXII 662023 663001 HC_gene_5938_tx_8 3 + 662023 663001 . 1 979 0 -chrXII 662023 663212 HC_gene_5938_tx_9 3 + 662023 663212 . 1 1190 0 -chrXII 662280 663212 HC_gene_5938_tx_10 8 + 662280 663212 . 1 933 0 -chrXII 662280 663212 HC_gene_5938_tx_11 1 + 662280 663212 . 2 276,476 0,457 -chrXII 662458 663001 HC_gene_5938_tx_15 1 + 662458 663001 . 1 544 0 -chrXII 662458 663212 HC_gene_5938_tx_12 7 + 662458 663212 . 1 755 0 -chrXII 662523 663212 HC_gene_5938_tx_13 27 + 662523 663212 . 1 690 0 -chrXII 662636 663212 HC_gene_5938_tx_14 7 + 662636 663212 . 1 577 0 -chrXII 663082 663498 HC_gene_6345_tx_1 88 - 663082 663498 . 1 417 0 -chrXII 663082 663813 HC_gene_6345_tx_2 62 - 663082 663813 . 1 732 0 -chrXII 663082 664048 HC_gene_6345_tx_3 62 - 663082 664048 . 1 967 0 -chrXII 663082 664048 HC_gene_6345_tx_4 1 - 663082 664048 . 2 718,204 0,763 -chrXII 663082 664134 HC_gene_6345_tx_5 51 - 663082 664134 . 1 1053 0 -chrXII 663082 664134 HC_gene_6345_tx_6 1 - 663082 664134 . 2 569,171 0,882 -chrXII 663082 664270 HC_gene_6345_tx_7 25 - 663082 664270 . 1 1189 0 -chrXII 663082 664270 HC_gene_6345_tx_8 1 - 663082 664270 . 2 374,768 0,421 -chrXII 663082 664270 HC_gene_6345_tx_9 1 - 663082 664270 . 2 504,624 0,565 -chrXII 663082 664347 HC_gene_6345_tx_10 29 - 663082 664347 . 1 1266 0 -chrXII 663082 664422 HC_gene_6345_tx_11 35 - 663082 664422 . 1 1341 0 -chrXII 663082 664477 HC_gene_6345_tx_12 14 - 663082 664477 . 1 1396 0 -chrXII 663082 664586 HC_gene_6345_tx_13 33 - 663082 664586 . 1 1505 0 -chrXII 663082 664586 HC_gene_6345_tx_14 1 - 663082 664586 . 2 1258,68 0,1437 -chrXII 663082 664750 HC_gene_6345_tx_15 32 - 663082 664750 . 1 1669 0 -chrXII 663082 664862 HC_gene_6345_tx_16 35 - 663082 664862 . 1 1781 0 -chrXII 663082 665036 HC_gene_6345_tx_17 286 - 663082 665036 . 1 1955 0 -chrXII 663082 665036 HC_gene_6345_tx_18 1 - 663082 665036 . 2 1249,393 0,1562 -chrXII 663082 665036 HC_gene_6345_tx_19 1 - 663082 665036 . 2 575,1049 0,906 -chrXII 663082 665036 HC_gene_6345_tx_20 1 - 663082 665036 . 3 877,399,475 0,966,1480 -chrXII 663082 665036 HC_gene_6345_tx_21 1 - 663082 665036 . 2 1127,661 0,1294 -chrXII 663082 665036 HC_gene_6345_tx_22 1 - 663082 665036 . 2 1004,671 0,1284 -chrXII 663082 665036 HC_gene_6345_tx_23 1 - 663082 665036 . 2 1365,535 0,1420 -chrXII 663082 665036 HC_gene_6345_tx_24 1 - 663082 665036 . 2 744,713 0,1242 -chrXII 663082 665036 HC_gene_6345_tx_25 1 - 663082 665036 . 2 1692,154 0,1801 -chrXII 663082 665036 HC_gene_6345_tx_26 1 - 663082 665036 . 2 450,678 0,1277 -chrXII 663082 665036 HC_gene_6345_tx_27 1 - 663082 665036 . 2 930,965 0,990 -chrXII 663082 665036 HC_gene_6345_tx_28 1 - 663082 665036 . 2 869,960 0,995 -chrXII 663082 665036 HC_gene_6345_tx_29 1 - 663082 665036 . 2 820,518 0,1437 -chrXII 663082 665036 HC_gene_6345_tx_30 1 - 663082 665036 . 2 165,1724 0,231 -chrXII 663082 665036 HC_gene_6345_tx_31 1 - 663082 665036 . 2 158,1721 0,234 -chrXII 663082 665036 HC_gene_6345_tx_32 1 - 663082 665036 . 2 716,1165 0,790 -chrXII 663082 665036 HC_gene_6345_tx_33 1 - 663082 665036 . 2 436,932 0,1023 -chrXII 663082 665036 HC_gene_6345_tx_34 1 - 663082 665036 . 2 396,1073 0,882 -chrXII 663082 665580 HC_gene_6345_tx_35 2 - 663082 665580 . 1 2499 0 -chrXII 665746 668124 HC_gene_5939_tx_1 8 + 665746 668124 . 1 2379 0 -chrXII 665746 668124 HC_gene_5939_tx_2 1 + 665746 668124 . 2 62,1988 0,391 -chrXII 666553 667524 MC_gene_6346_tx_1 1 - 666553 667524 . 1 972 0 -chrXII 667864 668496 HC_gene_6347_tx_1 2 - 667864 668496 . 1 633 0 -chrXII 667942 668496 HC_gene_6347_tx_2 13 - 667942 668496 . 1 555 0 -chrXII 667942 668641 HC_gene_6347_tx_3 5 - 667942 668641 . 1 700 0 -chrXII 667942 668833 HC_gene_6347_tx_8 11 - 667942 668833 . 1 892 0 -chrXII 667942 668932 HC_gene_6347_tx_9 91 - 667942 668932 . 1 991 0 -chrXII 668065 668932 HC_gene_6347_tx_10 1 - 668065 668932 . 1 868 0 -chrXII 668066 668496 HC_gene_6347_tx_43 1 - 668066 668496 . 1 431 0 -chrXII 668068 668641 HC_gene_6347_tx_4 1 - 668068 668641 . 1 574 0 -chrXII 668068 668833 HC_gene_6347_tx_11 2 - 668068 668833 . 1 766 0 -chrXII 668068 668932 HC_gene_6347_tx_12 5 - 668068 668932 . 1 865 0 -chrXII 668073 668932 HC_gene_6347_tx_13 1 - 668073 668932 . 1 860 0 -chrXII 668075 668932 HC_gene_6347_tx_14 1 - 668075 668932 . 1 858 0 -chrXII 668079 668932 HC_gene_6347_tx_15 1 - 668079 668932 . 1 854 0 -chrXII 668082 668932 HC_gene_6347_tx_16 1 - 668082 668932 . 1 851 0 -chrXII 668088 668932 HC_gene_6347_tx_17 1 - 668088 668932 . 1 845 0 -chrXII 668089 668932 HC_gene_6347_tx_18 1 - 668089 668932 . 2 31,777 0,67 -chrXII 668090 668496 HC_gene_6347_tx_44 1 - 668090 668496 . 1 407 0 -chrXII 668090 668932 HC_gene_6347_tx_19 1 - 668090 668932 . 1 843 0 -chrXII 668091 668932 HC_gene_6347_tx_20 1 - 668091 668932 . 1 842 0 -chrXII 668092 668932 HC_gene_6347_tx_21 1 - 668092 668932 . 1 841 0 -chrXII 668094 668932 HC_gene_6347_tx_22 1 - 668094 668932 . 1 839 0 -chrXII 668095 668932 HC_gene_6347_tx_23 1 - 668095 668932 . 1 838 0 -chrXII 668098 668932 HC_gene_6347_tx_24 1 - 668098 668932 . 1 835 0 -chrXII 668102 668932 HC_gene_6347_tx_25 2 - 668102 668932 . 1 831 0 -chrXII 668106 668932 HC_gene_6347_tx_26 2 - 668106 668932 . 1 827 0 -chrXII 668107 668932 HC_gene_6347_tx_27 1 - 668107 668932 . 1 826 0 -chrXII 668108 668496 HC_gene_6347_tx_45 1 - 668108 668496 . 1 389 0 -chrXII 668108 668932 HC_gene_6347_tx_28 2 - 668108 668932 . 1 825 0 -chrXII 668111 668641 HC_gene_6347_tx_5 1 - 668111 668641 . 1 531 0 -chrXII 668111 668932 HC_gene_6347_tx_29 1 - 668111 668932 . 1 822 0 -chrXII 668113 668932 HC_gene_6347_tx_30 1 - 668113 668932 . 1 820 0 -chrXII 668114 668932 HC_gene_6347_tx_31 2 - 668114 668932 . 1 819 0 -chrXII 668116 668932 HC_gene_6347_tx_32 2 - 668116 668932 . 1 817 0 -chrXII 668118 668932 HC_gene_6347_tx_33 1 - 668118 668932 . 1 815 0 -chrXII 668119 668496 HC_gene_6347_tx_46 1 - 668119 668496 . 1 378 0 -chrXII 668121 668496 HC_gene_6347_tx_47 1 - 668121 668496 . 1 376 0 -chrXII 668121 668641 HC_gene_6347_tx_6 1 - 668121 668641 . 1 521 0 -chrXII 668121 668932 HC_gene_6347_tx_34 1 - 668121 668932 . 1 812 0 -chrXII 668123 668932 HC_gene_6347_tx_35 1 - 668123 668932 . 1 810 0 -chrXII 668124 668496 HC_gene_6347_tx_48 1 - 668124 668496 . 1 373 0 -chrXII 668124 668641 HC_gene_6347_tx_7 1 - 668124 668641 . 1 518 0 -chrXII 668124 668932 HC_gene_6347_tx_36 3 - 668124 668932 . 1 809 0 -chrXII 668125 668932 HC_gene_6347_tx_37 2 - 668125 668932 . 1 808 0 -chrXII 668128 668932 HC_gene_6347_tx_38 1 - 668128 668932 . 1 805 0 -chrXII 668129 668496 HC_gene_6347_tx_49 1 - 668129 668496 . 1 368 0 -chrXII 668129 668932 HC_gene_6347_tx_39 1 - 668129 668932 . 1 804 0 -chrXII 668130 668833 HC_gene_6347_tx_40 1 - 668130 668833 . 1 704 0 -chrXII 668130 668932 HC_gene_6347_tx_41 2 - 668130 668932 . 1 803 0 -chrXII 668131 668932 HC_gene_6347_tx_42 1 - 668131 668932 . 1 802 0 -chrXII 669152 669701 HC_gene_6348_tx_1 3 - 669152 669701 . 1 550 0 -chrXII 669202 669377 HC_gene_5940_tx_1 1 + 669202 669377 . 1 176 0 -chrXII 669202 669477 HC_gene_5940_tx_2 4 + 669202 669477 . 1 276 0 -chrXII 669207 669701 HC_gene_6348_tx_2 15 - 669207 669701 . 1 495 0 -chrXII 669207 670050 HC_gene_6349_tx_1 1 - 669207 670050 . 1 844 0 -chrXII 669281 669701 HC_gene_6348_tx_3 2 - 669281 669701 . 1 421 0 -chrXII 669288 669701 HC_gene_6348_tx_4 2 - 669288 669701 . 1 414 0 -chrXII 669295 669701 HC_gene_6348_tx_5 1 - 669295 669701 . 1 407 0 -chrXII 669298 669701 HC_gene_6348_tx_6 1 - 669298 669701 . 1 404 0 -chrXII 669299 669701 HC_gene_6348_tx_7 1 - 669299 669701 . 1 403 0 -chrXII 669300 669701 HC_gene_6348_tx_8 1 - 669300 669701 . 1 402 0 -chrXII 669301 669701 HC_gene_6348_tx_9 1 - 669301 669701 . 1 401 0 -chrXII 669303 669701 HC_gene_6348_tx_10 1 - 669303 669701 . 1 399 0 -chrXII 669304 669701 HC_gene_6348_tx_11 1 - 669304 669701 . 1 398 0 -chrXII 669306 669701 HC_gene_6348_tx_12 1 - 669306 669701 . 1 396 0 -chrXII 669315 669701 HC_gene_6348_tx_13 1 - 669315 669701 . 1 387 0 -chrXII 669317 669701 HC_gene_6348_tx_14 1 - 669317 669701 . 1 385 0 -chrXII 669323 669701 HC_gene_6348_tx_15 1 - 669323 669701 . 1 379 0 -chrXII 669333 669701 HC_gene_6348_tx_16 1 - 669333 669701 . 1 369 0 -chrXII 669336 669701 HC_gene_6348_tx_17 1 - 669336 669701 . 1 366 0 -chrXII 669340 669701 HC_gene_6348_tx_18 3 - 669340 669701 . 1 362 0 -chrXII 669341 669701 HC_gene_6348_tx_19 1 - 669341 669701 . 1 361 0 -chrXII 669342 669701 HC_gene_6348_tx_20 2 - 669342 669701 . 1 360 0 -chrXII 669346 669701 HC_gene_6348_tx_21 1 - 669346 669701 . 1 356 0 -chrXII 669347 669701 HC_gene_6348_tx_22 3 - 669347 669701 . 1 355 0 -chrXII 669348 669701 HC_gene_6348_tx_23 7 - 669348 669701 . 1 354 0 -chrXII 669349 669701 HC_gene_6348_tx_24 3 - 669349 669701 . 1 353 0 -chrXII 669350 669701 HC_gene_6348_tx_25 2 - 669350 669701 . 1 352 0 -chrXII 669352 669701 HC_gene_6348_tx_26 6 - 669352 669701 . 1 350 0 -chrXII 669358 669701 HC_gene_6348_tx_27 1 - 669358 669701 . 1 344 0 -chrXII 669359 669701 HC_gene_6348_tx_28 82 - 669359 669701 . 1 343 0 -chrXII 669359 670050 HC_gene_6349_tx_2 1 - 669359 670050 . 1 692 0 -chrXII 669360 669701 HC_gene_6348_tx_29 22 - 669360 669701 . 1 342 0 -chrXII 669361 669701 HC_gene_6348_tx_30 22 - 669361 669701 . 1 341 0 -chrXII 669362 669701 HC_gene_6348_tx_31 7 - 669362 669701 . 1 340 0 -chrXII 669363 669701 HC_gene_6348_tx_32 203 - 669363 669701 . 1 339 0 -chrXII 669363 670050 HC_gene_6349_tx_3 1 - 669363 670050 . 1 688 0 -chrXII 669364 669701 HC_gene_6348_tx_33 24 - 669364 669701 . 1 338 0 -chrXII 669365 669701 HC_gene_6348_tx_34 31 - 669365 669701 . 1 337 0 -chrXII 669366 669701 HC_gene_6348_tx_35 63 - 669366 669701 . 1 336 0 -chrXII 669367 669701 HC_gene_6348_tx_36 314 - 669367 669701 . 1 335 0 -chrXII 669368 669701 HC_gene_6348_tx_37 15 - 669368 669701 . 1 334 0 -chrXII 669369 669701 HC_gene_6348_tx_38 171 - 669369 669701 . 1 333 0 -chrXII 669369 670050 HC_gene_6349_tx_4 2 - 669369 670050 . 1 682 0 -chrXII 669370 669701 HC_gene_6348_tx_39 15 - 669370 669701 . 1 332 0 -chrXII 669370 670050 HC_gene_6349_tx_5 1 - 669370 670050 . 1 681 0 -chrXII 669371 669701 HC_gene_6348_tx_40 256 - 669371 669701 . 1 331 0 -chrXII 669371 670050 HC_gene_6349_tx_6 3 - 669371 670050 . 1 680 0 -chrXII 669850 670188 HC_gene_5941_tx_1 6 + 669850 670188 . 1 339 0 -chrXII 671811 672582 LC_gene_6350_tx_1 1 - 671811 672582 . 1 772 0 -chrXII 673107 673419 HC_gene_5942_tx_1 2 + 673107 673419 . 1 313 0 -chrXII 673107 673446 HC_gene_5942_tx_2 2 + 673107 673446 . 1 340 0 -chrXII 673107 673452 HC_gene_5942_tx_3 2 + 673107 673452 . 1 346 0 -chrXII 673107 673982 HC_gene_5942_tx_4 708 + 673107 673982 . 1 876 0 -chrXII 673524 673982 HC_gene_5942_tx_5 132 + 673524 673982 . 1 459 0 -chrXII 674235 674642 HC_gene_6351_tx_1 19 - 674235 674642 . 1 408 0 -chrXII 674235 674701 HC_gene_6351_tx_2 5 - 674235 674701 . 1 467 0 -chrXII 674235 675459 HC_gene_6351_tx_3 48 - 674235 675459 . 1 1225 0 -chrXII 674235 675459 HC_gene_6351_tx_4 1 - 674235 675459 . 2 537,592 0,633 -chrXII 674235 677500 HC_gene_6351_tx_5 2 - 674235 677500 . 1 3266 0 -chrXII 675319 677500 HC_gene_6351_tx_6 1 - 675319 677500 . 1 2182 0 -chrXII 675591 676083 HC_gene_6351_tx_9 3 - 675591 676083 . 1 493 0 -chrXII 675591 677500 HC_gene_6351_tx_7 12 - 675591 677500 . 1 1910 0 -chrXII 675591 677500 HC_gene_6351_tx_8 1 - 675591 677500 . 2 802,986 0,924 -chrXII 675688 676400 MC_gene_5943_tx_1 1 + 675688 676400 . 1 713 0 -chrXII 675743 676487 MC_gene_5943_tx_2 1 + 675743 676487 . 1 745 0 -chrXII 676257 677500 HC_gene_6351_tx_10 5 - 676257 677500 . 1 1244 0 -chrXII 677939 678227 HC_gene_5944_tx_1 3 + 677939 678227 . 1 289 0 -chrXII 678143 680063 HC_gene_5945_tx_1 1 + 678143 680063 . 2 366,1458 0,463 -chrXII 678143 680063 HC_gene_5945_tx_2 2 + 678143 680063 . 1 1921 0 -chrXII 678796 679946 HC_gene_6352_tx_1 1 - 678796 679946 . 1 1151 0 -chrXII 680160 680940 HC_gene_5946_tx_1 1 + 680160 680940 . 1 781 0 -chrXII 680160 680941 HC_gene_5946_tx_2 1 + 680160 680941 . 1 782 0 -chrXII 680160 680942 HC_gene_5946_tx_3 3 + 680160 680942 . 1 783 0 -chrXII 680160 680943 HC_gene_5946_tx_4 1 + 680160 680943 . 1 784 0 -chrXII 680160 680944 HC_gene_5946_tx_5 3 + 680160 680944 . 1 785 0 -chrXII 680160 680947 HC_gene_5946_tx_6 4 + 680160 680947 . 1 788 0 -chrXII 680160 680948 HC_gene_5946_tx_7 9 + 680160 680948 . 1 789 0 -chrXII 680160 680949 HC_gene_5946_tx_8 2 + 680160 680949 . 1 790 0 -chrXII 680160 680950 HC_gene_5946_tx_9 4 + 680160 680950 . 1 791 0 -chrXII 680160 680951 HC_gene_5946_tx_10 10 + 680160 680951 . 1 792 0 -chrXII 680160 680953 HC_gene_5946_tx_11 1 + 680160 680953 . 1 794 0 -chrXII 680160 680955 HC_gene_5946_tx_12 4 + 680160 680955 . 1 796 0 -chrXII 680160 680956 HC_gene_5946_tx_13 1 + 680160 680956 . 1 797 0 -chrXII 680160 680957 HC_gene_5946_tx_14 2 + 680160 680957 . 1 798 0 -chrXII 680160 680958 HC_gene_5946_tx_15 1 + 680160 680958 . 1 799 0 -chrXII 680160 680959 HC_gene_5946_tx_16 5 + 680160 680959 . 1 800 0 -chrXII 680160 680962 HC_gene_5946_tx_17 1 + 680160 680962 . 1 803 0 -chrXII 680160 680967 HC_gene_5946_tx_18 1 + 680160 680967 . 1 808 0 -chrXII 680160 680972 HC_gene_5946_tx_19 1 + 680160 680972 . 1 813 0 -chrXII 680160 680973 HC_gene_5946_tx_20 1 + 680160 680973 . 1 814 0 -chrXII 680160 680978 HC_gene_5946_tx_21 1 + 680160 680978 . 1 819 0 -chrXII 680160 680979 HC_gene_5946_tx_22 1 + 680160 680979 . 1 820 0 -chrXII 680160 680982 HC_gene_5946_tx_23 1 + 680160 680982 . 1 823 0 -chrXII 680160 680996 HC_gene_5946_tx_24 1 + 680160 680996 . 1 837 0 -chrXII 680160 680997 HC_gene_5946_tx_25 1 + 680160 680997 . 1 838 0 -chrXII 680160 680998 HC_gene_5946_tx_26 7 + 680160 680998 . 1 839 0 -chrXII 680160 680998 HC_gene_5946_tx_27 1 + 680160 680998 . 2 570,172 0,667 -chrXII 680160 680999 HC_gene_5946_tx_28 4 + 680160 680999 . 1 840 0 -chrXII 680160 681001 HC_gene_5946_tx_29 1 + 680160 681001 . 1 842 0 -chrXII 680160 681016 HC_gene_5946_tx_30 1 + 680160 681016 . 1 857 0 -chrXII 680160 681018 HC_gene_5946_tx_31 1 + 680160 681018 . 1 859 0 -chrXII 680160 681021 HC_gene_5946_tx_32 1 + 680160 681021 . 1 862 0 -chrXII 680160 681023 HC_gene_5946_tx_33 1 + 680160 681023 . 1 864 0 -chrXII 680160 681029 HC_gene_5946_tx_34 1 + 680160 681029 . 1 870 0 -chrXII 680160 681030 HC_gene_5946_tx_35 1 + 680160 681030 . 1 871 0 -chrXII 680160 681031 HC_gene_5946_tx_36 1 + 680160 681031 . 1 872 0 -chrXII 680160 681035 HC_gene_5946_tx_37 1 + 680160 681035 . 1 876 0 -chrXII 680160 681038 HC_gene_5946_tx_38 1 + 680160 681038 . 1 879 0 -chrXII 680344 680942 HC_gene_5946_tx_39 2 + 680344 680942 . 1 599 0 -chrXII 680344 680949 HC_gene_5946_tx_40 2 + 680344 680949 . 1 606 0 -chrXII 680344 680951 HC_gene_5946_tx_41 1 + 680344 680951 . 1 608 0 -chrXII 680344 680955 HC_gene_5946_tx_42 1 + 680344 680955 . 1 612 0 -chrXII 680344 680957 HC_gene_5946_tx_43 1 + 680344 680957 . 1 614 0 -chrXII 680344 681000 HC_gene_5946_tx_44 1 + 680344 681000 . 2 518,48 0,609 -chrXII 680344 681018 HC_gene_5946_tx_45 1 + 680344 681018 . 1 675 0 -chrXII 680344 681023 HC_gene_5946_tx_46 1 + 680344 681023 . 1 680 0 -chrXII 680672 680944 HC_gene_5946_tx_47 1 + 680672 680944 . 1 273 0 -chrXII 680672 680948 HC_gene_5946_tx_48 1 + 680672 680948 . 1 277 0 -chrXII 680672 680996 HC_gene_5946_tx_49 1 + 680672 680996 . 1 325 0 -chrXII 680672 681000 HC_gene_5946_tx_50 1 + 680672 681000 . 1 329 0 -chrXII 681075 682456 HC_gene_5947_tx_1 1 + 681075 682456 . 1 1382 0 -chrXII 681076 682456 HC_gene_5947_tx_2 34 + 681076 682456 . 1 1381 0 -chrXII 681076 682456 HC_gene_5947_tx_3 1 + 681076 682456 . 2 1201,129 0,1252 -chrXII 681076 682456 HC_gene_5947_tx_4 1 + 681076 682456 . 2 353,779 0,602 -chrXII 681076 682456 HC_gene_5947_tx_5 1 + 681076 682456 . 2 881,433 0,948 -chrXII 681090 682456 HC_gene_5947_tx_6 1 + 681090 682456 . 1 1367 0 -chrXII 681103 682456 HC_gene_5947_tx_7 2 + 681103 682456 . 1 1354 0 -chrXII 681151 682456 HC_gene_5947_tx_8 1 + 681151 682456 . 1 1306 0 -chrXII 681474 682456 HC_gene_5947_tx_9 3 + 681474 682456 . 1 983 0 -chrXII 681616 682456 HC_gene_5947_tx_10 10 + 681616 682456 . 1 841 0 -chrXII 681747 682456 HC_gene_5947_tx_11 2 + 681747 682456 . 1 710 0 -chrXII 681847 682456 HC_gene_5947_tx_12 10 + 681847 682456 . 1 610 0 -chrXII 682348 682591 MC_gene_6353_tx_1 1 - 682348 682591 . 1 244 0 -chrXII 682394 683674 HC_gene_5948_tx_1 8 + 682394 683674 . 1 1281 0 -chrXII 682394 683791 HC_gene_5948_tx_2 3 + 682394 683791 . 1 1398 0 -chrXII 682578 683674 HC_gene_5948_tx_3 13 + 682578 683674 . 1 1097 0 -chrXII 682578 683791 HC_gene_5948_tx_4 5 + 682578 683791 . 1 1214 0 -chrXII 682949 683674 HC_gene_5948_tx_5 4 + 682949 683674 . 1 726 0 -chrXII 682949 683791 HC_gene_5948_tx_6 2 + 682949 683791 . 1 843 0 -chrXII 683094 683674 HC_gene_5948_tx_7 1 + 683094 683674 . 1 581 0 -chrXII 683094 683791 HC_gene_5948_tx_8 1 + 683094 683791 . 1 698 0 -chrXII 683301 683674 HC_gene_5948_tx_9 5 + 683301 683674 . 1 374 0 -chrXII 683301 683791 HC_gene_5948_tx_10 2 + 683301 683791 . 1 491 0 -chrXII 683597 687295 HC_gene_6354_tx_1 1 - 683597 687295 . 1 3699 0 -chrXII 683702 685502 LC_gene_5949_tx_1 1 + 683702 685502 . 1 1801 0 -chrXII 687306 687672 MC_gene_5950_tx_1 1 + 687306 687672 . 1 367 0 -chrXII 687702 687884 MC_gene_6355_tx_1 1 - 687702 687884 . 1 183 0 -chrXII 687789 688383 MC_gene_6356_tx_1 1 - 687789 688383 . 1 595 0 -chrXII 688369 690146 LC_gene_5951_tx_1 1 + 688369 690146 . 1 1778 0 -chrXII 688928 691203 HC_gene_6357_tx_1 4 - 688928 691203 . 1 2276 0 -chrXII 688928 691203 HC_gene_6357_tx_2 1 - 688928 691203 . 2 1121,1074 0,1202 -chrXII 691534 693537 HC_gene_5952_tx_1 1 + 691534 693537 . 2 1056,854 0,1150 -chrXII 691534 693954 HC_gene_5952_tx_2 2 + 691534 693954 . 1 2421 0 -chrXII 691534 694015 HC_gene_5952_tx_3 14 + 691534 694015 . 1 2482 0 -chrXII 693944 694155 LC_gene_6358_tx_1 1 - 693944 694155 . 1 212 0 -chrXII 694328 695071 HC_gene_5953_tx_1 26 + 694328 695071 . 2 55,599 0,145 -chrXII 694328 695071 HC_gene_5953_tx_2 31 + 694328 695071 . 1 744 0 -chrXII 694328 695071 HC_gene_5953_tx_3 1 + 694328 695071 . 2 46,599 0,145 -chrXII 694485 695071 HC_gene_5953_tx_4 21 + 694485 695071 . 1 587 0 -chrXII 694969 695336 HC_gene_6359_tx_1 26 - 694969 695336 . 1 368 0 -chrXII 694969 695622 HC_gene_6359_tx_2 9 - 694969 695622 . 1 654 0 -chrXII 694969 695895 HC_gene_6359_tx_3 18 - 694969 695895 . 1 927 0 -chrXII 694969 695974 HC_gene_6359_tx_4 4 - 694969 695974 . 1 1006 0 -chrXII 694969 696287 HC_gene_6359_tx_5 5 - 694969 696287 . 1 1319 0 -chrXII 694969 696800 HC_gene_6359_tx_6 1 - 694969 696800 . 1 1832 0 -chrXII 694969 696927 HC_gene_6359_tx_7 61 - 694969 696927 . 1 1959 0 -chrXII 694969 696927 HC_gene_6359_tx_8 1 - 694969 696927 . 2 488,1072 0,887 -chrXII 697081 699644 HC_gene_6360_tx_1 5 - 697081 699644 . 1 2564 0 -chrXII 698568 699644 HC_gene_6360_tx_2 1 - 698568 699644 . 1 1077 0 -chrXII 699845 700484 HC_gene_6361_tx_1 5 - 699845 700484 . 1 640 0 -chrXII 699845 700769 HC_gene_6361_tx_3 3 - 699845 700769 . 1 925 0 -chrXII 699858 700027 HC_gene_5954_tx_1 1 + 699858 700027 . 1 170 0 -chrXII 699858 702261 HC_gene_5954_tx_2 1 + 699858 702261 . 1 2404 0 -chrXII 699953 700484 HC_gene_6361_tx_2 4 - 699953 700484 . 1 532 0 -chrXII 699953 700769 HC_gene_6361_tx_4 7 - 699953 700769 . 1 817 0 -chrXII 699953 701445 HC_gene_6362_tx_1 1 - 699953 701445 . 1 1493 0 -chrXII 699953 704057 HC_gene_6362_tx_2 1 - 699953 704057 . 2 1259,2795 0,1310 -chrXII 704160 704975 HC_gene_6363_tx_1 1 - 704160 704975 . 1 816 0 -chrXII 704266 704643 LC_gene_5955_tx_1 1 + 704266 704643 . 1 378 0 -chrXII 705168 706182 HC_gene_5956_tx_1 21 + 705168 706182 . 1 1015 0 -chrXII 705241 706182 HC_gene_5956_tx_2 1 + 705241 706182 . 1 942 0 -chrXII 705372 706182 HC_gene_5956_tx_3 5 + 705372 706182 . 1 811 0 -chrXII 706112 707137 HC_gene_6364_tx_1 21 - 706112 707137 . 1 1026 0 -chrXII 707325 708248 HC_gene_5957_tx_1 59 + 707325 708248 . 1 924 0 -chrXII 707325 708351 HC_gene_5957_tx_2 83 + 707325 708351 . 1 1027 0 -chrXII 707325 708431 HC_gene_5957_tx_3 6 + 707325 708431 . 1 1107 0 -chrXII 707538 708248 HC_gene_5957_tx_4 5 + 707538 708248 . 1 711 0 -chrXII 707538 708351 HC_gene_5957_tx_5 9 + 707538 708351 . 1 814 0 -chrXII 707538 708431 HC_gene_5957_tx_6 1 + 707538 708431 . 2 749,80 0,814 -chrXII 707538 708431 HC_gene_5957_tx_7 2 + 707538 708431 . 1 894 0 -chrXII 707607 708248 HC_gene_5957_tx_8 10 + 707607 708248 . 1 642 0 -chrXII 707607 708351 HC_gene_5957_tx_9 4 + 707607 708351 . 1 745 0 -chrXII 707607 709078 HC_gene_5957_tx_10 1 + 707607 709078 . 1 1472 0 -chrXII 707793 708248 HC_gene_5957_tx_12 3 + 707793 708248 . 1 456 0 -chrXII 707793 708351 HC_gene_5957_tx_13 10 + 707793 708351 . 1 559 0 -chrXII 707793 708431 HC_gene_5957_tx_14 1 + 707793 708431 . 1 639 0 -chrXII 707793 709078 HC_gene_5957_tx_11 1 + 707793 709078 . 1 1286 0 -chrXII 708146 709041 HC_gene_6365_tx_1 1 - 708146 709041 . 1 896 0 -chrXII 708146 709389 HC_gene_6365_tx_2 1 - 708146 709389 . 1 1244 0 -chrXII 708263 708501 HC_gene_6365_tx_21 42 - 708263 708501 . 1 239 0 -chrXII 708263 709041 HC_gene_6365_tx_3 439 - 708263 709041 . 1 779 0 -chrXII 708263 709041 HC_gene_6365_tx_4 1 - 708263 709041 . 2 225,451 0,328 -chrXII 708263 709041 HC_gene_6365_tx_5 1 - 708263 709041 . 2 261,422 0,357 -chrXII 708263 709206 HC_gene_6365_tx_6 1 - 708263 709206 . 2 858,166 0,778 -chrXII 708263 709389 HC_gene_6365_tx_7 75 - 708263 709389 . 1 1127 0 -chrXII 708263 709389 HC_gene_6365_tx_8 1 - 708263 709389 . 2 927,135 0,992 -chrXII 708263 709389 HC_gene_6365_tx_9 1 - 708263 709389 . 2 840,202 0,925 -chrXII 708263 709649 HC_gene_6365_tx_10 47 - 708263 709649 . 1 1387 0 -chrXII 708263 709649 HC_gene_6365_tx_11 1 - 708263 709649 . 2 1135,105 0,1282 -chrXII 708263 709649 HC_gene_6365_tx_12 1 - 708263 709649 . 2 511,395 0,992 -chrXII 708263 709649 HC_gene_6365_tx_13 1 - 708263 709649 . 2 537,242 0,1145 -chrXII 708263 709649 HC_gene_6365_tx_14 1 - 708263 709649 . 2 666,99 0,1288 -chrXII 708263 709771 HC_gene_6365_tx_15 41 - 708263 709771 . 1 1509 0 -chrXII 708263 709771 HC_gene_6365_tx_16 1 - 708263 709771 . 2 263,584 0,925 -chrXII 708402 708501 HC_gene_6365_tx_22 1 - 708402 708501 . 1 100 0 -chrXII 708402 709041 HC_gene_6365_tx_17 27 - 708402 709041 . 1 640 0 -chrXII 708402 709389 HC_gene_6365_tx_18 10 - 708402 709389 . 1 988 0 -chrXII 708402 709649 HC_gene_6365_tx_19 4 - 708402 709649 . 1 1248 0 -chrXII 708402 709771 HC_gene_6365_tx_20 4 - 708402 709771 . 1 1370 0 -chrXII 710211 710531 HC_gene_6366_tx_1 1 - 710211 710531 . 1 321 0 -chrXII 710211 712126 HC_gene_6366_tx_2 1 - 710211 712126 . 1 1916 0 -chrXII 710320 712104 HC_gene_6366_tx_3 1 - 710320 712104 . 1 1785 0 -chrXII 710320 712120 HC_gene_6366_tx_4 1 - 710320 712120 . 1 1801 0 -chrXII 710320 712126 HC_gene_6366_tx_5 3 - 710320 712126 . 1 1807 0 -chrXII 710320 712126 HC_gene_6366_tx_6 1 - 710320 712126 . 2 671,1059 0,748 -chrXII 710592 712126 HC_gene_6366_tx_7 1 - 710592 712126 . 1 1535 0 -chrXII 710718 712126 HC_gene_6366_tx_8 1 - 710718 712126 . 1 1409 0 -chrXII 710722 712126 HC_gene_6366_tx_9 1 - 710722 712126 . 1 1405 0 -chrXII 710725 712126 HC_gene_6366_tx_10 2 - 710725 712126 . 1 1402 0 -chrXII 710731 712126 HC_gene_6366_tx_11 2 - 710731 712126 . 1 1396 0 -chrXII 710737 712126 HC_gene_6366_tx_12 3 - 710737 712126 . 1 1390 0 -chrXII 710738 712126 HC_gene_6366_tx_13 1 - 710738 712126 . 2 1055,174 0,1215 -chrXII 710738 712126 HC_gene_6366_tx_14 1 - 710738 712126 . 1 1389 0 -chrXII 710740 712126 HC_gene_6366_tx_15 1 - 710740 712126 . 1 1387 0 -chrXII 710742 712126 HC_gene_6366_tx_16 2 - 710742 712126 . 1 1385 0 -chrXII 710745 712126 HC_gene_6366_tx_17 1 - 710745 712126 . 1 1382 0 -chrXII 710748 712126 HC_gene_6366_tx_18 2 - 710748 712126 . 1 1379 0 -chrXII 710750 712126 HC_gene_6366_tx_19 2 - 710750 712126 . 1 1377 0 -chrXII 710762 712126 HC_gene_6366_tx_20 1 - 710762 712126 . 2 515,802 0,563 -chrXII 710762 712126 HC_gene_6366_tx_21 2 - 710762 712126 . 1 1365 0 -chrXII 710765 712126 HC_gene_6366_tx_22 3 - 710765 712126 . 1 1362 0 -chrXII 710768 712126 HC_gene_6366_tx_23 1 - 710768 712126 . 1 1359 0 -chrXII 710769 712126 HC_gene_6366_tx_24 3 - 710769 712126 . 1 1358 0 -chrXII 710770 712126 HC_gene_6366_tx_25 1 - 710770 712126 . 1 1357 0 -chrXII 710771 712126 HC_gene_6366_tx_26 1 - 710771 712126 . 1 1356 0 -chrXII 710773 712126 HC_gene_6366_tx_27 2 - 710773 712126 . 1 1354 0 -chrXII 710774 712126 HC_gene_6366_tx_28 1 - 710774 712126 . 1 1353 0 -chrXII 710775 712126 HC_gene_6366_tx_29 2 - 710775 712126 . 1 1352 0 -chrXII 710781 712126 HC_gene_6366_tx_30 1 - 710781 712126 . 1 1346 0 -chrXII 710789 712126 HC_gene_6366_tx_31 1 - 710789 712126 . 1 1338 0 -chrXII 710804 712126 HC_gene_6366_tx_32 1 - 710804 712126 . 1 1323 0 -chrXII 710814 712126 HC_gene_6366_tx_33 1 - 710814 712126 . 1 1313 0 -chrXII 710833 712126 HC_gene_6366_tx_34 1 - 710833 712126 . 1 1294 0 -chrXII 710834 712126 HC_gene_6366_tx_35 2 - 710834 712126 . 1 1293 0 -chrXII 710843 712126 HC_gene_6366_tx_36 1 - 710843 712126 . 1 1284 0 -chrXII 710856 712126 HC_gene_6366_tx_37 1 - 710856 712126 . 1 1271 0 -chrXII 710858 712126 HC_gene_6366_tx_38 1 - 710858 712126 . 1 1269 0 -chrXII 710873 712126 HC_gene_6366_tx_39 1 - 710873 712126 . 1 1254 0 -chrXII 710887 712126 HC_gene_6366_tx_40 1 - 710887 712126 . 1 1240 0 -chrXII 710898 712126 HC_gene_6366_tx_41 1 - 710898 712126 . 1 1229 0 -chrXII 710899 711240 MC_gene_5958_tx_1 1 + 710899 711240 . 1 342 0 -chrXII 710900 712126 HC_gene_6366_tx_42 1 - 710900 712126 . 1 1227 0 -chrXII 712348 712737 HC_gene_6367_tx_1 4502 - 712348 712737 . 1 390 0 -chrXII 713003 713178 HC_gene_6368_tx_1 2 - 713003 713178 . 1 176 0 -chrXII 713003 714923 HC_gene_6368_tx_2 1 - 713003 714923 . 1 1921 0 -chrXII 713341 713840 HC_gene_6368_tx_4 2 - 713341 713840 . 1 500 0 -chrXII 713341 714923 HC_gene_6368_tx_3 9 - 713341 714923 . 1 1583 0 -chrXII 713517 714732 MC_gene_5959_tx_1 1 + 713517 714732 . 1 1216 0 -chrXII 715058 717141 HC_gene_5960_tx_1 4 + 715058 717141 . 1 2084 0 -chrXII 716965 717446 HC_gene_6369_tx_1 6 - 716965 717446 . 1 482 0 -chrXII 716965 717989 HC_gene_6369_tx_3 30 - 716965 717989 . 1 1025 0 -chrXII 717029 717446 HC_gene_6369_tx_2 12 - 717029 717446 . 1 418 0 -chrXII 717029 717989 HC_gene_6369_tx_4 73 - 717029 717989 . 1 961 0 -chrXII 717101 717989 HC_gene_6369_tx_5 11 - 717101 717989 . 1 889 0 -chrXII 718131 718810 HC_gene_6370_tx_1 10 - 718131 718810 . 1 680 0 -chrXII 718131 719042 HC_gene_6370_tx_2 12 - 718131 719042 . 1 912 0 -chrXII 718131 719173 HC_gene_6370_tx_3 8 - 718131 719173 . 1 1043 0 -chrXII 718131 719495 HC_gene_6370_tx_4 87 - 718131 719495 . 1 1365 0 -chrXII 718131 719495 HC_gene_6370_tx_5 1 - 718131 719495 . 2 367,604 0,761 -chrXII 718131 719495 HC_gene_6370_tx_6 1 - 718131 719495 . 2 115,1152 0,213 -chrXII 718131 719495 HC_gene_6370_tx_7 1 - 718131 719495 . 2 105,1152 0,213 -chrXII 718131 719495 HC_gene_6370_tx_8 1 - 718131 719495 . 2 111,1093 0,272 -chrXII 718131 719495 HC_gene_6370_tx_9 1 - 718131 719495 . 2 137,1162 0,203 -chrXII 718131 719495 HC_gene_6370_tx_10 1 - 718131 719495 . 2 1169,139 0,1226 -chrXII 719603 719874 HC_gene_6371_tx_1 7 - 719603 719874 . 1 272 0 -chrXII 719603 719964 HC_gene_6371_tx_2 16 - 719603 719964 . 1 362 0 -chrXII 719603 720082 HC_gene_6371_tx_3 16 - 719603 720082 . 1 480 0 -chrXII 719603 720193 HC_gene_6371_tx_4 15 - 719603 720193 . 1 591 0 -chrXII 719603 720385 HC_gene_6371_tx_5 182 - 719603 720385 . 1 783 0 -chrXII 720628 721028 HC_gene_6372_tx_1 374 - 720628 721028 . 1 401 0 -chrXII 720628 721193 HC_gene_6372_tx_2 158 - 720628 721193 . 1 566 0 -chrXII 720628 721367 HC_gene_6372_tx_3 94 - 720628 721367 . 1 740 0 -chrXII 720628 721454 HC_gene_6372_tx_4 1870 - 720628 721454 . 1 827 0 -chrXII 721703 721802 MC_gene_5961_tx_1 1 + 721703 721802 . 1 100 0 -chrXII 721747 722070 HC_gene_6373_tx_1 50 - 721747 722070 . 1 324 0 -chrXII 721747 722418 HC_gene_6373_tx_2 430 - 721747 722418 . 1 672 0 -chrXII 721764 722363 MC_gene_5962_tx_1 1 + 721764 722363 . 1 600 0 -chrXII 721846 722418 HC_gene_6373_tx_3 20 - 721846 722418 . 1 573 0 -chrXII 723814 724052 HC_gene_5963_tx_1 1 + 723814 724052 . 1 239 0 -chrXII 723885 724607 HC_gene_5964_tx_1 2 + 723885 724607 . 1 723 0 -chrXII 723885 724724 HC_gene_5964_tx_2 1 + 723885 724724 . 1 840 0 -chrXII 723885 724725 HC_gene_5964_tx_3 3 + 723885 724725 . 1 841 0 -chrXII 723885 724726 HC_gene_5964_tx_4 5 + 723885 724726 . 1 842 0 -chrXII 723885 724727 HC_gene_5964_tx_5 2 + 723885 724727 . 1 843 0 -chrXII 723885 724728 HC_gene_5964_tx_6 1 + 723885 724728 . 1 844 0 -chrXII 723885 724729 HC_gene_5964_tx_7 1 + 723885 724729 . 1 845 0 -chrXII 723885 724730 HC_gene_5964_tx_8 11 + 723885 724730 . 1 846 0 -chrXII 723885 724731 HC_gene_5964_tx_9 2 + 723885 724731 . 1 847 0 -chrXII 724049 724730 HC_gene_5964_tx_10 1 + 724049 724730 . 1 682 0 -chrXII 724315 724607 HC_gene_5964_tx_11 1 + 724315 724607 . 1 293 0 -chrXII 724456 724730 HC_gene_5964_tx_12 1 + 724456 724730 . 1 275 0 -chrXII 724512 725338 HC_gene_6374_tx_1 1 - 724512 725338 . 1 827 0 -chrXII 724643 725201 HC_gene_6374_tx_2 5 - 724643 725201 . 1 559 0 -chrXII 724643 725338 HC_gene_6374_tx_3 6 - 724643 725338 . 1 696 0 -chrXII 724643 725401 HC_gene_6374_tx_4 2 - 724643 725401 . 1 759 0 -chrXII 724643 725402 HC_gene_6374_tx_5 1 - 724643 725402 . 1 760 0 -chrXII 724643 725404 HC_gene_6374_tx_6 4 - 724643 725404 . 1 762 0 -chrXII 724643 725419 HC_gene_6374_tx_7 1 - 724643 725419 . 1 777 0 -chrXII 724643 725422 HC_gene_6374_tx_8 45 - 724643 725422 . 1 780 0 -chrXII 724643 725422 HC_gene_6374_tx_9 1 - 724643 725422 . 2 609,113 0,667 -chrXII 724643 725423 HC_gene_6374_tx_10 1 - 724643 725423 . 1 781 0 -chrXII 724643 725425 HC_gene_6374_tx_11 3 - 724643 725425 . 1 783 0 -chrXII 724643 725428 HC_gene_6374_tx_12 2 - 724643 725428 . 1 786 0 -chrXII 724944 725385 LC_gene_5965_tx_1 1 + 724944 725385 . 1 442 0 -chrXII 725634 725940 HC_gene_5966_tx_1 13 + 725634 725940 . 1 307 0 -chrXII 725638 725940 HC_gene_5966_tx_2 1 + 725638 725940 . 1 303 0 -chrXII 725647 725940 HC_gene_5966_tx_3 1 + 725647 725940 . 1 294 0 -chrXII 725819 727063 MC_gene_6375_tx_1 1 - 725819 727063 . 1 1245 0 -chrXII 725889 726241 HC_gene_5967_tx_1 1 + 725889 726241 . 1 353 0 -chrXII 725889 728181 HC_gene_5967_tx_2 2 + 725889 728181 . 1 2293 0 -chrXII 725889 728233 HC_gene_5967_tx_3 1 + 725889 728233 . 2 1003,1178 0,1167 -chrXII 725944 728181 HC_gene_5967_tx_4 10 + 725944 728181 . 1 2238 0 -chrXII 727594 727889 LC_gene_6376_tx_1 1 - 727594 727889 . 1 296 0 -chrXII 728067 728561 LC_gene_6377_tx_1 1 - 728067 728561 . 1 495 0 -chrXII 728856 729709 HC_gene_5968_tx_1 3 + 728856 729709 . 1 854 0 -chrXII 728856 730532 HC_gene_5968_tx_2 530 + 728856 730532 . 1 1677 0 -chrXII 728856 730532 HC_gene_5968_tx_3 1 + 728856 730532 . 2 959,559 0,1118 -chrXII 728856 730532 HC_gene_5968_tx_4 1 + 728856 730532 . 2 496,1113 0,564 -chrXII 728856 730532 HC_gene_5968_tx_5 1 + 728856 730532 . 2 1412,206 0,1471 -chrXII 728856 730532 HC_gene_5968_tx_6 1 + 728856 730532 . 2 1183,386 0,1291 -chrXII 728856 730532 HC_gene_5968_tx_7 1 + 728856 730532 . 2 341,517 0,1160 -chrXII 728856 730532 HC_gene_5968_tx_8 1 + 728856 730532 . 2 779,474 0,1203 -chrXII 728856 730532 HC_gene_5968_tx_9 1 + 728856 730532 . 2 602,345 0,1332 -chrXII 728856 730532 HC_gene_5968_tx_10 1 + 728856 730532 . 2 745,861 0,816 -chrXII 728856 730532 HC_gene_5968_tx_11 1 + 728856 730532 . 2 496,948 0,729 -chrXII 728856 730532 HC_gene_5968_tx_12 1 + 728856 730532 . 2 1188,331 0,1346 -chrXII 728856 730532 HC_gene_5968_tx_13 1 + 728856 730532 . 2 907,706 0,971 -chrXII 728856 730532 HC_gene_5968_tx_14 1 + 728856 730532 . 2 1452,94 0,1583 -chrXII 728856 730532 HC_gene_5968_tx_15 1 + 728856 730532 . 2 358,1259 0,418 -chrXII 729132 730532 HC_gene_5968_tx_16 69 + 729132 730532 . 1 1401 0 -chrXII 729132 730532 HC_gene_5968_tx_17 1 + 729132 730532 . 2 348,706 0,695 -chrXII 729252 730532 HC_gene_5968_tx_18 35 + 729252 730532 . 1 1281 0 -chrXII 729502 730532 HC_gene_5968_tx_19 100 + 729502 730532 . 1 1031 0 -chrXII 729502 730532 HC_gene_5968_tx_20 1 + 729502 730532 . 2 261,717 0,314 -chrXII 729502 730532 HC_gene_5968_tx_21 1 + 729502 730532 . 2 190,761 0,270 -chrXII 729502 730532 HC_gene_5968_tx_22 1 + 729502 730532 . 2 359,138 0,893 -chrXII 729608 730532 HC_gene_5968_tx_23 92 + 729608 730532 . 1 925 0 -chrXII 729820 730532 HC_gene_5968_tx_24 72 + 729820 730532 . 1 713 0 -chrXII 729912 730532 HC_gene_5968_tx_25 165 + 729912 730532 . 1 621 0 -chrXII 730011 730532 HC_gene_5968_tx_26 86 + 730011 730532 . 1 522 0 -chrXII 730167 730532 HC_gene_5968_tx_27 137 + 730167 730532 . 1 366 0 -chrXII 730793 731688 HC_gene_5969_tx_1 184 + 730793 731688 . 1 896 0 -chrXII 731102 731688 HC_gene_5969_tx_2 42 + 731102 731688 . 1 587 0 -chrXII 731158 731688 HC_gene_5969_tx_3 6 + 731158 731688 . 1 531 0 -chrXII 732005 733911 LC_gene_6378_tx_1 1 - 732005 733911 . 1 1907 0 -chrXII 732398 733985 MC_gene_5970_tx_1 1 + 732398 733985 . 1 1588 0 -chrXII 732510 734689 MC_gene_5971_tx_1 1 + 732510 734689 . 1 2180 0 -chrXII 732519 734260 MC_gene_5971_tx_2 1 + 732519 734260 . 1 1742 0 -chrXII 732535 734331 MC_gene_5971_tx_3 1 + 732535 734331 . 1 1797 0 -chrXII 733952 734493 LC_gene_6379_tx_1 1 - 733952 734493 . 2 377,37 0,505 -chrXII 735033 735375 HC_gene_6380_tx_1 113 - 735033 735375 . 1 343 0 -chrXII 735033 735511 HC_gene_6380_tx_2 94 - 735033 735511 . 1 479 0 -chrXII 735033 735585 HC_gene_6380_tx_3 53 - 735033 735585 . 1 553 0 -chrXII 735033 735832 HC_gene_6380_tx_4 106 - 735033 735832 . 1 800 0 -chrXII 735033 736168 HC_gene_6380_tx_5 48 - 735033 736168 . 1 1136 0 -chrXII 735033 736492 HC_gene_6380_tx_6 28 - 735033 736492 . 1 1460 0 -chrXII 735046 735686 MC_gene_5972_tx_1 1 + 735046 735686 . 1 641 0 -chrXII 737358 737588 HC_gene_6381_tx_1 1 - 737358 737588 . 1 231 0 -chrXII 738060 738387 LC_gene_5973_tx_1 1 + 738060 738387 . 1 328 0 -chrXII 738107 743916 HC_gene_6382_tx_1 2 - 738107 743916 . 1 5810 0 -chrXII 744081 744918 HC_gene_5974_tx_1 1 + 744081 744918 . 2 73,631 0,207 -chrXII 744082 744918 HC_gene_5974_tx_2 1 + 744082 744918 . 2 72,631 0,206 -chrXII 744087 744918 HC_gene_5974_tx_3 1 + 744087 744918 . 2 67,631 0,201 -chrXII 744096 744918 HC_gene_5974_tx_4 1 + 744096 744918 . 2 58,631 0,192 -chrXII 744103 744918 HC_gene_5974_tx_5 1 + 744103 744918 . 2 51,631 0,185 -chrXII 744117 744918 HC_gene_5974_tx_6 1 + 744117 744918 . 2 37,631 0,171 -chrXII 744129 745001 LC_gene_6383_tx_1 1 - 744129 745001 . 1 873 0 -chrXII 744138 744918 HC_gene_5974_tx_7 5 + 744138 744918 . 1 781 0 -chrXII 744272 744918 HC_gene_5974_tx_8 26 + 744272 744918 . 1 647 0 -chrXII 744388 744918 HC_gene_5974_tx_9 7 + 744388 744918 . 1 531 0 -chrXII 747193 748202 MC_gene_6384_tx_1 1 - 747193 748202 . 1 1010 0 -chrXII 748833 749596 HC_gene_6385_tx_1 5 - 748833 749596 . 1 764 0 -chrXII 748833 750041 HC_gene_6385_tx_3 5 - 748833 750041 . 1 1209 0 -chrXII 748833 750161 HC_gene_6385_tx_4 3 - 748833 750161 . 1 1329 0 -chrXII 748833 750587 HC_gene_6385_tx_7 4 - 748833 750587 . 1 1755 0 -chrXII 748833 750661 HC_gene_6385_tx_8 4 - 748833 750661 . 1 1829 0 -chrXII 748833 750839 HC_gene_6385_tx_9 3 - 748833 750839 . 1 2007 0 -chrXII 748833 751041 HC_gene_6385_tx_10 4 - 748833 751041 . 1 2209 0 -chrXII 748833 751349 HC_gene_6385_tx_11 1 - 748833 751349 . 1 2517 0 -chrXII 748833 751521 HC_gene_6385_tx_12 1 - 748833 751521 . 1 2689 0 -chrXII 748833 751791 HC_gene_6385_tx_13 7 - 748833 751791 . 1 2959 0 -chrXII 748976 749596 HC_gene_6385_tx_2 4 - 748976 749596 . 1 621 0 -chrXII 748976 750041 HC_gene_6385_tx_5 2 - 748976 750041 . 1 1066 0 -chrXII 748976 750161 HC_gene_6385_tx_6 3 - 748976 750161 . 1 1186 0 -chrXII 748976 750587 HC_gene_6385_tx_14 2 - 748976 750587 . 1 1612 0 -chrXII 748976 750661 HC_gene_6385_tx_15 1 - 748976 750661 . 1 1686 0 -chrXII 748976 750839 HC_gene_6385_tx_16 1 - 748976 750839 . 1 1864 0 -chrXII 748976 751041 HC_gene_6385_tx_17 3 - 748976 751041 . 1 2066 0 -chrXII 748976 751041 HC_gene_6385_tx_18 1 - 748976 751041 . 2 1587,402 0,1664 -chrXII 748976 751349 HC_gene_6385_tx_19 1 - 748976 751349 . 1 2374 0 -chrXII 748976 751417 HC_gene_6385_tx_20 1 - 748976 751417 . 1 2442 0 -chrXII 748976 751521 HC_gene_6385_tx_21 4 - 748976 751521 . 1 2546 0 -chrXII 748976 751791 HC_gene_6385_tx_22 1 - 748976 751791 . 2 2191,416 0,2400 -chrXII 748976 751791 HC_gene_6385_tx_23 6 - 748976 751791 . 1 2816 0 -chrXII 748976 751791 HC_gene_6385_tx_24 1 - 748976 751791 . 2 1881,134 0,2682 -chrXII 751071 752022 LC_gene_5975_tx_1 1 + 751071 752022 . 1 952 0 -chrXII 751966 752967 HC_gene_6386_tx_1 14 - 751966 752967 . 1 1002 0 -chrXII 751966 752967 HC_gene_6386_tx_2 1 - 751966 752967 . 2 773,136 0,866 -chrXII 751966 753292 HC_gene_6386_tx_3 3 - 751966 753292 . 1 1327 0 -chrXII 751966 753469 HC_gene_6386_tx_4 5 - 751966 753469 . 1 1504 0 -chrXII 751966 754293 HC_gene_6386_tx_5 2 - 751966 754293 . 1 2328 0 -chrXII 751966 754644 HC_gene_6386_tx_6 2 - 751966 754644 . 1 2679 0 -chrXII 751966 756475 HC_gene_6386_tx_7 1 - 751966 756475 . 1 4510 0 -chrXII 751966 756732 HC_gene_6386_tx_8 1 - 751966 756732 . 1 4767 0 -chrXII 751966 757014 HC_gene_6386_tx_9 1 - 751966 757014 . 1 5049 0 -chrXII 751966 757154 HC_gene_6386_tx_10 3 - 751966 757154 . 1 5189 0 -chrXII 751966 757154 HC_gene_6386_tx_11 1 - 751966 757154 . 2 3756,1329 0,3860 -chrXII 757335 759028 HC_gene_6387_tx_1 1 - 757335 759028 . 2 747,796 0,898 -chrXII 757353 758824 HC_gene_5976_tx_1 1 + 757353 758824 . 1 1472 0 -chrXII 757424 759028 HC_gene_6387_tx_2 2 - 757424 759028 . 1 1605 0 -chrXII 759467 760401 HC_gene_5977_tx_1 74 + 759467 760401 . 1 935 0 -chrXII 759467 760401 HC_gene_5977_tx_2 1 + 759467 760401 . 2 445,426 0,509 -chrXII 759641 760401 HC_gene_5977_tx_3 13 + 759641 760401 . 1 761 0 -chrXII 759887 760401 HC_gene_5977_tx_4 9 + 759887 760401 . 1 515 0 -chrXII 760304 762387 HC_gene_6388_tx_1 7 - 760304 762387 . 1 2084 0 -chrXII 761800 762565 LC_gene_5978_tx_1 1 + 761800 762565 . 1 766 0 -chrXII 762435 762823 HC_gene_6389_tx_1 19 - 762435 762823 . 1 389 0 -chrXII 762435 763042 HC_gene_6389_tx_2 6 - 762435 763042 . 1 608 0 -chrXII 762435 763635 HC_gene_6389_tx_3 13 - 762435 763635 . 1 1201 0 -chrXII 762435 763836 HC_gene_6389_tx_4 10 - 762435 763836 . 1 1402 0 -chrXII 762435 764208 HC_gene_6389_tx_5 34 - 762435 764208 . 1 1774 0 -chrXII 762435 764208 HC_gene_6389_tx_6 1 - 762435 764208 . 2 953,276 0,1498 -chrXII 762435 764208 HC_gene_6389_tx_7 1 - 762435 764208 . 2 472,756 0,1018 -chrXII 762435 764208 HC_gene_6389_tx_8 1 - 762435 764208 . 2 705,1012 0,762 -chrXII 762435 764208 HC_gene_6389_tx_9 1 - 762435 764208 . 2 788,891 0,883 -chrXII 764743 765039 LC_gene_6390_tx_1 1 - 764743 765039 . 1 297 0 -chrXII 764772 766231 HC_gene_5979_tx_1 3 + 764772 766231 . 1 1460 0 -chrXII 765142 766383 HC_gene_6391_tx_1 17 - 765142 766383 . 3 932,52,134 0,988,1108 -chrXII 765142 766383 HC_gene_6391_tx_2 1 - 765142 766383 . 3 940,52,134 0,988,1108 -chrXII 765142 766383 HC_gene_6391_tx_3 2 - 765142 766383 . 2 932,134 0,1108 -chrXII 765142 766383 HC_gene_6391_tx_4 1 - 765142 766383 . 2 952,134 0,1108 -chrXII 765142 766383 HC_gene_6391_tx_5 3 - 765142 766383 . 2 932,254 0,988 -chrXII 765142 766383 HC_gene_6391_tx_6 2 - 765142 766383 . 1 1242 0 -chrXII 765142 766383 HC_gene_6391_tx_7 2 - 765142 766383 . 2 1040,134 0,1108 -chrXII 765142 766383 HC_gene_6391_tx_8 1 - 765142 766383 . 3 932,56,134 0,984,1108 -chrXII 765142 766383 HC_gene_6391_tx_9 1 - 765142 766383 . 2 932,138 0,1104 -chrXII 766571 767836 HC_gene_5980_tx_1 3 + 766571 767836 . 1 1266 0 -chrXII 766571 769227 HC_gene_5980_tx_2 1 + 766571 769227 . 1 2657 0 -chrXII 769132 769517 HC_gene_6392_tx_1 8 - 769132 769517 . 1 386 0 -chrXII 769132 771726 HC_gene_6392_tx_2 5 - 769132 771726 . 1 2595 0 -chrXII 771923 773821 HC_gene_5981_tx_1 2 + 771923 773821 . 1 1899 0 -chrXII 771923 773821 HC_gene_5981_tx_2 1 + 771923 773821 . 2 182,1543 0,356 -chrXII 771923 774778 HC_gene_5981_tx_3 2 + 771923 774778 . 1 2856 0 -chrXII 771923 774778 HC_gene_5981_tx_4 1 + 771923 774778 . 2 66,2560 0,296 -chrXII 771923 776367 HC_gene_5981_tx_5 4 + 771923 776367 . 1 4445 0 -chrXII 774712 776367 HC_gene_5981_tx_6 1 + 774712 776367 . 1 1656 0 -chrXII 776274 776725 HC_gene_6393_tx_1 16 - 776274 776725 . 1 452 0 -chrXII 776274 777876 HC_gene_6393_tx_2 38 - 776274 777876 . 1 1603 0 -chrXII 776274 777876 HC_gene_6393_tx_3 1 - 776274 777876 . 2 779,677 0,926 -chrXII 777912 778989 HC_gene_6394_tx_1 2 - 777912 778989 . 1 1078 0 -chrXII 777982 778989 HC_gene_6394_tx_2 16 - 777982 778989 . 1 1008 0 -chrXII 778275 778926 LC_gene_5982_tx_1 1 + 778275 778926 . 1 652 0 -chrXII 779143 780895 HC_gene_5983_tx_1 25 + 779143 780895 . 1 1753 0 -chrXII 779143 780895 HC_gene_5983_tx_2 1 + 779143 780895 . 2 258,1327 0,426 -chrXII 779644 780895 HC_gene_5983_tx_3 2 + 779644 780895 . 1 1252 0 -chrXII 780338 780895 HC_gene_5983_tx_4 11 + 780338 780895 . 1 558 0 -chrXII 780417 780895 HC_gene_5983_tx_5 4 + 780417 780895 . 1 479 0 -chrXII 780876 781400 HC_gene_6395_tx_1 4623 - 780876 781400 . 1 525 0 -chrXII 781269 782000 LC_gene_5984_tx_1 1 + 781269 782000 . 1 732 0 -chrXII 782098 783025 HC_gene_5985_tx_1 55 + 782098 783025 . 1 928 0 -chrXII 782098 783025 HC_gene_5985_tx_2 1 + 782098 783025 . 2 685,205 0,723 -chrXII 782131 782720 LC_gene_6396_tx_1 1 - 782131 782720 . 1 590 0 -chrXII 782729 783025 HC_gene_5985_tx_3 6 + 782729 783025 . 1 297 0 -chrXII 782953 783186 HC_gene_6397_tx_1 11 - 782953 783186 . 1 234 0 -chrXII 782953 783309 HC_gene_6397_tx_2 20 - 782953 783309 . 1 357 0 -chrXII 782953 783476 HC_gene_6397_tx_3 216 - 782953 783476 . 1 524 0 -chrXII 782953 783657 HC_gene_6397_tx_4 8 - 782953 783657 . 1 705 0 -chrXII 784701 786291 HC_gene_5986_tx_1 41 + 784701 786291 . 1 1591 0 -chrXII 785128 786291 HC_gene_5986_tx_2 4 + 785128 786291 . 1 1164 0 -chrXII 785128 786291 HC_gene_5986_tx_3 1 + 785128 786291 . 2 746,337 0,827 -chrXII 786724 787400 HC_gene_6398_tx_1 3 - 786724 787400 . 1 677 0 -chrXII 787652 789825 HC_gene_5987_tx_1 1 + 787652 789825 . 2 1027,1098 0,1076 -chrXII 787652 789825 HC_gene_5987_tx_2 1 + 787652 789825 . 2 731,1379 0,795 -chrXII 787652 789825 HC_gene_5987_tx_3 46 + 787652 789825 . 1 2174 0 -chrXII 787652 789825 HC_gene_5987_tx_4 1 + 787652 789825 . 2 1462,649 0,1525 -chrXII 787652 789825 HC_gene_5987_tx_5 1 + 787652 789825 . 2 1462,653 0,1521 -chrXII 787717 789825 HC_gene_5987_tx_6 2 + 787717 789825 . 1 2109 0 -chrXII 788266 789825 HC_gene_5987_tx_7 6 + 788266 789825 . 1 1560 0 -chrXII 788266 789825 HC_gene_5987_tx_8 1 + 788266 789825 . 2 559,847 0,713 -chrXII 788396 789825 HC_gene_5987_tx_9 18 + 788396 789825 . 1 1430 0 -chrXII 788855 789825 HC_gene_5987_tx_10 23 + 788855 789825 . 1 971 0 -chrXII 788855 789825 HC_gene_5987_tx_11 1 + 788855 789825 . 2 555,317 0,654 -chrXII 788989 789825 HC_gene_5987_tx_12 28 + 788989 789825 . 1 837 0 -chrXII 788989 789825 HC_gene_5987_tx_13 1 + 788989 789825 . 2 127,641 0,196 -chrXII 789205 789825 HC_gene_5987_tx_14 16 + 789205 789825 . 1 621 0 -chrXII 789276 789825 HC_gene_5987_tx_15 28 + 789276 789825 . 1 550 0 -chrXII 789446 789714 MC_gene_6399_tx_1 1 - 789446 789714 . 1 269 0 -chrXII 789470 789825 HC_gene_5987_tx_16 52 + 789470 789825 . 1 356 0 -chrXII 789697 790383 MC_gene_6400_tx_1 1 - 789697 790383 . 1 687 0 -chrXII 790304 791994 HC_gene_5988_tx_1 82 + 790304 791994 . 1 1691 0 -chrXII 790304 791994 HC_gene_5988_tx_2 1 + 790304 791994 . 2 168,1056 0,635 -chrXII 790304 791994 HC_gene_5988_tx_3 1 + 790304 791994 . 2 934,670 0,1021 -chrXII 790569 791994 HC_gene_5988_tx_4 7 + 790569 791994 . 1 1426 0 -chrXII 790855 791994 HC_gene_5988_tx_5 6 + 790855 791994 . 1 1140 0 -chrXII 790927 791994 HC_gene_5988_tx_6 7 + 790927 791994 . 1 1068 0 -chrXII 791001 791994 HC_gene_5988_tx_7 13 + 791001 791994 . 1 994 0 -chrXII 791899 793188 MC_gene_6401_tx_1 1 - 791899 793188 . 1 1290 0 -chrXII 793175 793503 HC_gene_5989_tx_1 2 + 793175 793503 . 1 329 0 -chrXII 793289 793545 LC_gene_6402_tx_1 1 - 793289 793545 . 1 257 0 -chrXII 793928 794395 LC_gene_5990_tx_1 1 + 793928 794395 . 1 468 0 -chrXII 794181 795213 HC_gene_6403_tx_1 3 - 794181 795213 . 1 1033 0 -chrXII 794397 795213 HC_gene_6403_tx_2 1 - 794397 795213 . 1 817 0 -chrXII 794400 795213 HC_gene_6403_tx_3 1 - 794400 795213 . 1 814 0 -chrXII 794416 795213 HC_gene_6403_tx_4 1 - 794416 795213 . 1 798 0 -chrXII 794494 795213 HC_gene_6403_tx_5 1 - 794494 795213 . 1 720 0 -chrXII 794509 795213 HC_gene_6403_tx_6 1 - 794509 795213 . 1 705 0 -chrXII 794555 795213 HC_gene_6403_tx_7 1 - 794555 795213 . 1 659 0 -chrXII 794638 795213 HC_gene_6403_tx_8 1 - 794638 795213 . 1 576 0 -chrXII 794645 795213 HC_gene_6403_tx_9 1 - 794645 795213 . 1 569 0 -chrXII 794652 795213 HC_gene_6403_tx_10 1 - 794652 795213 . 1 562 0 -chrXII 794656 795213 HC_gene_6403_tx_11 1 - 794656 795213 . 1 558 0 -chrXII 794792 795213 HC_gene_6403_tx_12 59 - 794792 795213 . 1 422 0 -chrXII 795361 796135 LC_gene_5991_tx_1 1 + 795361 796135 . 1 775 0 -chrXII 795414 795742 HC_gene_6404_tx_1 132 - 795414 795742 . 1 329 0 -chrXII 795414 795918 HC_gene_6404_tx_2 2141 - 795414 795918 . 1 505 0 -chrXII 795414 796140 HC_gene_6404_tx_3 21 - 795414 796140 . 1 727 0 -chrXII 795414 796368 HC_gene_6404_tx_4 48 - 795414 796368 . 1 955 0 -chrXII 795414 796368 HC_gene_6404_tx_5 59 - 795414 796368 . 2 499,33 0,922 -chrXII 796717 797113 MC_gene_5992_tx_1 1 + 796717 797113 . 1 397 0 -chrXII 796893 797053 MC_gene_5992_tx_2 1 + 796893 797053 . 1 161 0 -chrXII 797406 799636 HC_gene_5993_tx_1 6 + 797406 799636 . 1 2231 0 -chrXII 797406 799636 HC_gene_5993_tx_2 1 + 797406 799636 . 2 1004,1123 0,1108 -chrXII 797406 799716 HC_gene_5993_tx_3 22 + 797406 799716 . 1 2311 0 -chrXII 797406 799716 HC_gene_5993_tx_4 1 + 797406 799716 . 2 292,1659 0,652 -chrXII 797710 798933 LC_gene_6405_tx_1 1 - 797710 798933 . 1 1224 0 -chrXII 797866 799636 HC_gene_5993_tx_5 1 + 797866 799636 . 1 1771 0 -chrXII 797866 799716 HC_gene_5993_tx_6 3 + 797866 799716 . 1 1851 0 -chrXII 799619 801820 HC_gene_6406_tx_1 3 - 799619 801820 . 1 2202 0 -chrXII 799619 802351 HC_gene_6406_tx_2 2 - 799619 802351 . 1 2733 0 -chrXII 799619 802424 HC_gene_6406_tx_3 17 - 799619 802424 . 1 2806 0 -chrXII 802528 803207 HC_gene_6407_tx_1 31 - 802528 803207 . 1 680 0 -chrXII 802528 803303 HC_gene_6407_tx_2 14 - 802528 803303 . 1 776 0 -chrXII 802528 803688 HC_gene_6407_tx_3 8 - 802528 803688 . 1 1161 0 -chrXII 802528 803916 HC_gene_6407_tx_4 3 - 802528 803916 . 1 1389 0 -chrXII 802528 803991 HC_gene_6407_tx_5 4 - 802528 803991 . 1 1464 0 -chrXII 802528 804129 HC_gene_6407_tx_6 3 - 802528 804129 . 1 1602 0 -chrXII 802528 804235 HC_gene_6407_tx_7 3 - 802528 804235 . 1 1708 0 -chrXII 802528 804557 HC_gene_6407_tx_8 1 - 802528 804557 . 1 2030 0 -chrXII 802528 804733 HC_gene_6407_tx_9 1 - 802528 804733 . 1 2206 0 -chrXII 802528 805172 HC_gene_6407_tx_10 1 - 802528 805172 . 2 814,1018 0,1627 -chrXII 804436 805214 LC_gene_5994_tx_1 1 + 804436 805214 . 1 779 0 -chrXII 805826 806911 HC_gene_5995_tx_1 4752 + 805826 806911 . 1 1086 0 -chrXII 806026 806911 HC_gene_5995_tx_2 415 + 806026 806911 . 1 886 0 -chrXII 806467 806911 HC_gene_5995_tx_3 2645 + 806467 806911 . 1 445 0 -chrXII 806822 808642 HC_gene_6408_tx_1 3 - 806822 808642 . 1 1821 0 -chrXII 806822 808841 HC_gene_6408_tx_2 4 - 806822 808841 . 1 2020 0 -chrXII 806910 809625 MC_gene_5996_tx_1 1 + 806910 809625 . 2 914,1693 0,1023 -chrXII 807908 808642 HC_gene_6408_tx_3 1 - 807908 808642 . 1 735 0 -chrXII 807908 808841 HC_gene_6408_tx_4 1 - 807908 808841 . 1 934 0 -chrXII 808145 808642 HC_gene_6408_tx_5 2 - 808145 808642 . 1 498 0 -chrXII 808145 808841 HC_gene_6408_tx_6 3 - 808145 808841 . 1 697 0 -chrXII 809740 811795 HC_gene_5997_tx_1 1 + 809740 811795 . 1 2056 0 -chrXII 809740 811916 HC_gene_5997_tx_2 3 + 809740 811916 . 1 2177 0 -chrXII 809740 812338 HC_gene_5997_tx_3 1 + 809740 812338 . 1 2599 0 -chrXII 809740 814023 HC_gene_5997_tx_9 1 + 809740 814023 . 1 4284 0 -chrXII 809740 815828 HC_gene_5997_tx_10 1 + 809740 815828 . 1 6089 0 -chrXII 809740 815829 HC_gene_5997_tx_11 3 + 809740 815829 . 1 6090 0 -chrXII 809740 815831 HC_gene_5997_tx_12 1 + 809740 815831 . 1 6092 0 -chrXII 809740 815840 HC_gene_5997_tx_13 2 + 809740 815840 . 1 6101 0 -chrXII 809740 815845 HC_gene_5997_tx_14 1 + 809740 815845 . 2 1826,4162 0,1944 -chrXII 809740 815846 HC_gene_5997_tx_15 3 + 809740 815846 . 1 6107 0 -chrXII 809740 815859 HC_gene_5997_tx_16 1 + 809740 815859 . 1 6120 0 -chrXII 809740 815859 HC_gene_5997_tx_17 1 + 809740 815859 . 2 1554,3905 0,2215 -chrXII 809740 815861 HC_gene_5997_tx_18 2 + 809740 815861 . 1 6122 0 -chrXII 809740 815862 HC_gene_5997_tx_19 1 + 809740 815862 . 1 6123 0 -chrXII 809740 815882 HC_gene_5997_tx_20 1 + 809740 815882 . 1 6143 0 -chrXII 809740 815886 HC_gene_5997_tx_21 1 + 809740 815886 . 2 1546,4492 0,1655 -chrXII 809740 816127 HC_gene_5997_tx_22 1 + 809740 816127 . 1 6388 0 -chrXII 809765 815866 HC_gene_5997_tx_23 1 + 809765 815866 . 2 4184,1069 0,5033 -chrXII 809775 811916 HC_gene_5997_tx_4 1 + 809775 811916 . 1 2142 0 -chrXII 809791 812119 HC_gene_5997_tx_5 1 + 809791 812119 . 1 2329 0 -chrXII 810059 811916 HC_gene_5997_tx_6 1 + 810059 811916 . 1 1858 0 -chrXII 810059 815829 HC_gene_5997_tx_24 1 + 810059 815829 . 1 5771 0 -chrXII 810059 815831 HC_gene_5997_tx_25 1 + 810059 815831 . 1 5773 0 -chrXII 810059 815852 HC_gene_5997_tx_26 1 + 810059 815852 . 2 1227,4503 0,1291 -chrXII 810059 815860 HC_gene_5997_tx_27 1 + 810059 815860 . 2 1186,4482 0,1320 -chrXII 810059 815881 HC_gene_5997_tx_28 1 + 810059 815881 . 1 5823 0 -chrXII 810216 815837 HC_gene_5997_tx_29 1 + 810216 815837 . 1 5622 0 -chrXII 810216 815838 HC_gene_5997_tx_30 1 + 810216 815838 . 1 5623 0 -chrXII 810216 815844 HC_gene_5997_tx_31 1 + 810216 815844 . 1 5629 0 -chrXII 810368 811916 HC_gene_5997_tx_7 2 + 810368 811916 . 1 1549 0 -chrXII 810643 811916 HC_gene_5997_tx_8 6 + 810643 811916 . 1 1274 0 -chrXII 810643 815829 HC_gene_5997_tx_32 3 + 810643 815829 . 1 5187 0 -chrXII 810643 815838 HC_gene_5997_tx_33 3 + 810643 815838 . 1 5196 0 -chrXII 810643 815838 HC_gene_5997_tx_34 1 + 810643 815838 . 2 572,4494 0,702 -chrXII 810643 815846 HC_gene_5997_tx_35 2 + 810643 815846 . 1 5204 0 -chrXII 810643 815848 HC_gene_5997_tx_36 1 + 810643 815848 . 1 5206 0 -chrXII 810643 815856 HC_gene_5997_tx_37 2 + 810643 815856 . 1 5214 0 -chrXII 810643 815861 HC_gene_5997_tx_38 1 + 810643 815861 . 2 1566,2966 0,2253 -chrXII 810643 815876 HC_gene_5997_tx_39 2 + 810643 815876 . 1 5234 0 -chrXII 810643 815882 HC_gene_5997_tx_40 1 + 810643 815882 . 1 5240 0 -chrXII 810643 817827 HC_gene_5997_tx_129 1 + 810643 817827 . 1 7185 0 -chrXII 811494 811795 HC_gene_5997_tx_130 1 + 811494 811795 . 1 302 0 -chrXII 811494 811916 HC_gene_5997_tx_131 1 + 811494 811916 . 1 423 0 -chrXII 811494 815828 HC_gene_5997_tx_41 1 + 811494 815828 . 1 4335 0 -chrXII 811494 815837 HC_gene_5997_tx_42 1 + 811494 815837 . 1 4344 0 -chrXII 811756 815828 HC_gene_5997_tx_43 1 + 811756 815828 . 3 183,711,2553 0,622,1520 -chrXII 811756 815846 HC_gene_5997_tx_44 1 + 811756 815846 . 2 3309,690 0,3401 -chrXII 811756 815852 HC_gene_5997_tx_45 1 + 811756 815852 . 1 4097 0 -chrXII 811756 815858 HC_gene_5997_tx_46 1 + 811756 815858 . 1 4103 0 -chrXII 811756 815873 HC_gene_5997_tx_47 2 + 811756 815873 . 1 4118 0 -chrXII 811756 815876 HC_gene_5997_tx_48 1 + 811756 815876 . 1 4121 0 -chrXII 811756 816536 HC_gene_5997_tx_49 1 + 811756 816536 . 1 4781 0 -chrXII 811870 812339 HC_gene_5997_tx_132 1 + 811870 812339 . 1 470 0 -chrXII 811870 815844 HC_gene_5997_tx_50 1 + 811870 815844 . 1 3975 0 -chrXII 811870 815846 HC_gene_5997_tx_51 1 + 811870 815846 . 1 3977 0 -chrXII 811870 815852 HC_gene_5997_tx_52 1 + 811870 815852 . 1 3983 0 -chrXII 811870 815856 HC_gene_5997_tx_53 1 + 811870 815856 . 1 3987 0 -chrXII 811870 815862 HC_gene_5997_tx_54 2 + 811870 815862 . 1 3993 0 -chrXII 811870 815879 HC_gene_5997_tx_55 1 + 811870 815879 . 1 4010 0 -chrXII 811870 815880 HC_gene_5997_tx_56 1 + 811870 815880 . 1 4011 0 -chrXII 811870 815881 HC_gene_5997_tx_57 1 + 811870 815881 . 1 4012 0 -chrXII 811870 815882 HC_gene_5997_tx_58 1 + 811870 815882 . 1 4013 0 -chrXII 811870 816127 HC_gene_5997_tx_59 1 + 811870 816127 . 1 4258 0 -chrXII 811989 814023 HC_gene_5997_tx_133 1 + 811989 814023 . 2 730,874 0,1161 -chrXII 811989 815828 HC_gene_5997_tx_60 1 + 811989 815828 . 3 1341,642,1171 0,1797,2669 -chrXII 811989 815831 HC_gene_5997_tx_61 1 + 811989 815831 . 2 83,3683 0,160 -chrXII 811989 815831 HC_gene_5997_tx_62 1 + 811989 815831 . 1 3843 0 -chrXII 811989 815833 HC_gene_5997_tx_63 1 + 811989 815833 . 1 3845 0 -chrXII 811989 815839 HC_gene_5997_tx_64 2 + 811989 815839 . 1 3851 0 -chrXII 811989 815855 HC_gene_5997_tx_65 1 + 811989 815855 . 2 3207,588 0,3279 -chrXII 811989 815856 HC_gene_5997_tx_66 1 + 811989 815856 . 1 3868 0 -chrXII 811989 815863 HC_gene_5997_tx_67 1 + 811989 815863 . 1 3875 0 -chrXII 811989 815866 HC_gene_5997_tx_68 2 + 811989 815866 . 1 3878 0 -chrXII 811989 815873 HC_gene_5997_tx_69 1 + 811989 815873 . 1 3885 0 -chrXII 811989 815878 HC_gene_5997_tx_70 1 + 811989 815878 . 2 2421,1229 0,2661 -chrXII 811989 815879 HC_gene_5997_tx_71 1 + 811989 815879 . 1 3891 0 -chrXII 811989 816127 HC_gene_5997_tx_72 1 + 811989 816127 . 1 4139 0 -chrXII 812114 814023 HC_gene_5997_tx_134 1 + 812114 814023 . 1 1910 0 -chrXII 812114 815840 HC_gene_5997_tx_73 1 + 812114 815840 . 1 3727 0 -chrXII 812238 815828 HC_gene_5997_tx_74 1 + 812238 815828 . 1 3591 0 -chrXII 812238 815829 HC_gene_5997_tx_75 1 + 812238 815829 . 1 3592 0 -chrXII 812238 815850 HC_gene_5997_tx_76 1 + 812238 815850 . 1 3613 0 -chrXII 812238 815858 HC_gene_5997_tx_77 1 + 812238 815858 . 2 1251,2314 0,1307 -chrXII 812238 815861 HC_gene_5997_tx_78 1 + 812238 815861 . 1 3624 0 -chrXII 812238 815863 HC_gene_5997_tx_79 1 + 812238 815863 . 1 3626 0 -chrXII 812238 815883 HC_gene_5997_tx_80 1 + 812238 815883 . 1 3646 0 -chrXII 812353 815831 HC_gene_5997_tx_81 1 + 812353 815831 . 1 3479 0 -chrXII 812353 815840 HC_gene_5997_tx_82 1 + 812353 815840 . 1 3488 0 -chrXII 812353 815876 HC_gene_5997_tx_83 1 + 812353 815876 . 1 3524 0 -chrXII 812546 815828 HC_gene_5997_tx_84 1 + 812546 815828 . 1 3283 0 -chrXII 812546 815829 HC_gene_5997_tx_85 1 + 812546 815829 . 1 3284 0 -chrXII 812546 815831 HC_gene_5997_tx_86 1 + 812546 815831 . 1 3286 0 -chrXII 812546 815852 HC_gene_5997_tx_87 1 + 812546 815852 . 1 3307 0 -chrXII 812546 815860 HC_gene_5997_tx_88 1 + 812546 815860 . 2 1136,2103 0,1212 -chrXII 812546 815861 HC_gene_5997_tx_89 1 + 812546 815861 . 1 3316 0 -chrXII 812546 815873 HC_gene_5997_tx_90 1 + 812546 815873 . 1 3328 0 -chrXII 812546 815876 HC_gene_5997_tx_91 1 + 812546 815876 . 1 3331 0 -chrXII 812546 815879 HC_gene_5997_tx_92 1 + 812546 815879 . 1 3334 0 -chrXII 812546 815880 HC_gene_5997_tx_93 1 + 812546 815880 . 1 3335 0 -chrXII 812546 815882 HC_gene_5997_tx_94 1 + 812546 815882 . 1 3337 0 -chrXII 812647 815829 HC_gene_5997_tx_95 2 + 812647 815829 . 1 3183 0 -chrXII 812647 815830 HC_gene_5997_tx_96 2 + 812647 815830 . 1 3184 0 -chrXII 812647 815837 HC_gene_5997_tx_97 1 + 812647 815837 . 1 3191 0 -chrXII 812647 815850 HC_gene_5997_tx_98 1 + 812647 815850 . 1 3204 0 -chrXII 812647 815860 HC_gene_5997_tx_99 1 + 812647 815860 . 1 3214 0 -chrXII 812647 815866 HC_gene_5997_tx_100 1 + 812647 815866 . 1 3220 0 -chrXII 812647 815878 HC_gene_5997_tx_101 1 + 812647 815878 . 1 3232 0 -chrXII 812647 815879 HC_gene_5997_tx_102 1 + 812647 815879 . 1 3233 0 -chrXII 812647 815937 HC_gene_5997_tx_103 1 + 812647 815937 . 1 3291 0 -chrXII 812733 815846 HC_gene_5997_tx_104 1 + 812733 815846 . 2 823,2071 0,1043 -chrXII 812733 815846 HC_gene_5997_tx_105 1 + 812733 815846 . 2 1125,1887 0,1227 -chrXII 812733 815873 HC_gene_5997_tx_106 1 + 812733 815873 . 1 3141 0 -chrXII 812834 815828 HC_gene_5997_tx_107 2 + 812834 815828 . 1 2995 0 -chrXII 812834 815829 HC_gene_5997_tx_108 2 + 812834 815829 . 1 2996 0 -chrXII 812834 815831 HC_gene_5997_tx_109 1 + 812834 815831 . 1 2998 0 -chrXII 812834 815837 HC_gene_5997_tx_110 3 + 812834 815837 . 1 3004 0 -chrXII 812834 815837 HC_gene_5997_tx_111 1 + 812834 815837 . 2 1729,472 0,2532 -chrXII 812834 815839 HC_gene_5997_tx_112 1 + 812834 815839 . 1 3006 0 -chrXII 812834 815840 HC_gene_5997_tx_113 1 + 812834 815840 . 1 3007 0 -chrXII 812834 815841 HC_gene_5997_tx_114 1 + 812834 815841 . 1 3008 0 -chrXII 812834 815843 HC_gene_5997_tx_115 1 + 812834 815843 . 1 3010 0 -chrXII 812834 815846 HC_gene_5997_tx_116 2 + 812834 815846 . 1 3013 0 -chrXII 812834 815850 HC_gene_5997_tx_117 1 + 812834 815850 . 1 3017 0 -chrXII 812834 815856 HC_gene_5997_tx_118 1 + 812834 815856 . 1 3023 0 -chrXII 812834 815860 HC_gene_5997_tx_119 1 + 812834 815860 . 1 3027 0 -chrXII 812834 815861 HC_gene_5997_tx_120 1 + 812834 815861 . 1 3028 0 -chrXII 812834 815874 HC_gene_5997_tx_121 1 + 812834 815874 . 1 3041 0 -chrXII 812834 815876 HC_gene_5997_tx_122 2 + 812834 815876 . 1 3043 0 -chrXII 812834 815879 HC_gene_5997_tx_123 2 + 812834 815879 . 1 3046 0 -chrXII 812834 815880 HC_gene_5997_tx_124 2 + 812834 815880 . 1 3047 0 -chrXII 812834 815881 HC_gene_5997_tx_125 1 + 812834 815881 . 1 3048 0 -chrXII 812834 815882 HC_gene_5997_tx_126 1 + 812834 815882 . 1 3049 0 -chrXII 812834 815962 HC_gene_5997_tx_127 1 + 812834 815962 . 1 3129 0 -chrXII 812834 816127 HC_gene_5997_tx_128 2 + 812834 816127 . 1 3294 0 -chrXII 813561 815828 HC_gene_5997_tx_135 1 + 813561 815828 . 1 2268 0 -chrXII 813561 815829 HC_gene_5997_tx_136 1 + 813561 815829 . 1 2269 0 -chrXII 813561 815829 HC_gene_5997_tx_137 1 + 813561 815829 . 2 631,1524 0,745 -chrXII 813561 815837 HC_gene_5997_tx_138 1 + 813561 815837 . 1 2277 0 -chrXII 813561 815838 HC_gene_5997_tx_139 1 + 813561 815838 . 2 1221,659 0,1619 -chrXII 813561 815838 HC_gene_5997_tx_140 1 + 813561 815838 . 1 2278 0 -chrXII 813561 815839 HC_gene_5997_tx_141 1 + 813561 815839 . 1 2279 0 -chrXII 813561 815843 HC_gene_5997_tx_142 1 + 813561 815843 . 1 2283 0 -chrXII 813561 815856 HC_gene_5997_tx_143 1 + 813561 815856 . 1 2296 0 -chrXII 813561 815859 HC_gene_5997_tx_144 1 + 813561 815859 . 1 2299 0 -chrXII 813561 815860 HC_gene_5997_tx_145 1 + 813561 815860 . 1 2300 0 -chrXII 813561 815879 HC_gene_5997_tx_146 1 + 813561 815879 . 1 2319 0 -chrXII 813561 815880 HC_gene_5997_tx_147 1 + 813561 815880 . 1 2320 0 -chrXII 813561 815882 HC_gene_5997_tx_148 2 + 813561 815882 . 1 2322 0 -chrXII 813561 815946 HC_gene_5997_tx_149 1 + 813561 815946 . 1 2386 0 -chrXII 813796 815828 HC_gene_5997_tx_150 3 + 813796 815828 . 1 2033 0 -chrXII 813796 815828 HC_gene_5997_tx_151 1 + 813796 815828 . 2 1952,36 0,1997 -chrXII 813796 815829 HC_gene_5997_tx_152 1 + 813796 815829 . 1 2034 0 -chrXII 813796 815831 HC_gene_5997_tx_153 2 + 813796 815831 . 1 2036 0 -chrXII 813796 815832 HC_gene_5997_tx_154 1 + 813796 815832 . 1 2037 0 -chrXII 813796 815833 HC_gene_5997_tx_155 1 + 813796 815833 . 1 2038 0 -chrXII 813796 815838 HC_gene_5997_tx_156 2 + 813796 815838 . 1 2043 0 -chrXII 813796 815844 HC_gene_5997_tx_157 1 + 813796 815844 . 1 2049 0 -chrXII 813796 815845 HC_gene_5997_tx_158 1 + 813796 815845 . 1 2050 0 -chrXII 813796 815846 HC_gene_5997_tx_159 1 + 813796 815846 . 1 2051 0 -chrXII 813796 815850 HC_gene_5997_tx_160 1 + 813796 815850 . 1 2055 0 -chrXII 813796 815852 HC_gene_5997_tx_161 1 + 813796 815852 . 1 2057 0 -chrXII 813796 815859 HC_gene_5997_tx_162 1 + 813796 815859 . 1 2064 0 -chrXII 813796 815860 HC_gene_5997_tx_163 3 + 813796 815860 . 1 2065 0 -chrXII 813796 815861 HC_gene_5997_tx_164 1 + 813796 815861 . 1 2066 0 -chrXII 813796 815874 HC_gene_5997_tx_165 1 + 813796 815874 . 1 2079 0 -chrXII 813796 815876 HC_gene_5997_tx_166 2 + 813796 815876 . 1 2081 0 -chrXII 813796 815879 HC_gene_5997_tx_167 1 + 813796 815879 . 2 315,1574 0,510 -chrXII 813796 815879 HC_gene_5997_tx_168 2 + 813796 815879 . 1 2084 0 -chrXII 813796 815880 HC_gene_5997_tx_169 1 + 813796 815880 . 1 2085 0 -chrXII 813796 815881 HC_gene_5997_tx_170 4 + 813796 815881 . 1 2086 0 -chrXII 813796 815882 HC_gene_5997_tx_171 2 + 813796 815882 . 1 2087 0 -chrXII 813796 815960 HC_gene_5997_tx_172 1 + 813796 815960 . 1 2165 0 -chrXII 813944 815828 HC_gene_5997_tx_173 2 + 813944 815828 . 1 1885 0 -chrXII 813944 815829 HC_gene_5997_tx_174 1 + 813944 815829 . 1 1886 0 -chrXII 813944 815831 HC_gene_5997_tx_175 1 + 813944 815831 . 1 1888 0 -chrXII 813944 815837 HC_gene_5997_tx_176 1 + 813944 815837 . 1 1894 0 -chrXII 813944 815839 HC_gene_5997_tx_177 1 + 813944 815839 . 1 1896 0 -chrXII 813944 815850 HC_gene_5997_tx_178 1 + 813944 815850 . 1 1907 0 -chrXII 813944 815851 HC_gene_5997_tx_179 1 + 813944 815851 . 1 1908 0 -chrXII 813944 815852 HC_gene_5997_tx_180 1 + 813944 815852 . 1 1909 0 -chrXII 813944 815861 HC_gene_5997_tx_181 1 + 813944 815861 . 1 1918 0 -chrXII 813944 815866 HC_gene_5997_tx_182 1 + 813944 815866 . 2 496,1200 0,723 -chrXII 813944 815870 HC_gene_5997_tx_183 1 + 813944 815870 . 1 1927 0 -chrXII 813944 815873 HC_gene_5997_tx_184 1 + 813944 815873 . 1 1930 0 -chrXII 813944 815876 HC_gene_5997_tx_185 1 + 813944 815876 . 1 1933 0 -chrXII 813944 815882 HC_gene_5997_tx_186 1 + 813944 815882 . 1 1939 0 -chrXII 813944 816127 HC_gene_5997_tx_187 1 + 813944 816127 . 1 2184 0 -chrXII 814028 814850 HC_gene_5997_tx_259 1 + 814028 814850 . 1 823 0 -chrXII 814028 815828 HC_gene_5997_tx_188 4 + 814028 815828 . 1 1801 0 -chrXII 814028 815829 HC_gene_5997_tx_189 1 + 814028 815829 . 1 1802 0 -chrXII 814028 815830 HC_gene_5997_tx_190 3 + 814028 815830 . 1 1803 0 -chrXII 814028 815831 HC_gene_5997_tx_191 3 + 814028 815831 . 1 1804 0 -chrXII 814028 815833 HC_gene_5997_tx_192 1 + 814028 815833 . 1 1806 0 -chrXII 814028 815837 HC_gene_5997_tx_193 1 + 814028 815837 . 1 1810 0 -chrXII 814028 815838 HC_gene_5997_tx_194 1 + 814028 815838 . 1 1811 0 -chrXII 814028 815846 HC_gene_5997_tx_195 1 + 814028 815846 . 2 829,635 0,1184 -chrXII 814028 815850 HC_gene_5997_tx_196 1 + 814028 815850 . 1 1823 0 -chrXII 814028 815851 HC_gene_5997_tx_197 2 + 814028 815851 . 1 1824 0 -chrXII 814028 815855 HC_gene_5997_tx_198 1 + 814028 815855 . 1 1828 0 -chrXII 814028 815856 HC_gene_5997_tx_199 1 + 814028 815856 . 1 1829 0 -chrXII 814028 815857 HC_gene_5997_tx_200 1 + 814028 815857 . 1 1830 0 -chrXII 814028 815859 HC_gene_5997_tx_201 1 + 814028 815859 . 1 1832 0 -chrXII 814028 815860 HC_gene_5997_tx_202 1 + 814028 815860 . 1 1833 0 -chrXII 814028 815861 HC_gene_5997_tx_203 3 + 814028 815861 . 1 1834 0 -chrXII 814028 815866 HC_gene_5997_tx_204 2 + 814028 815866 . 1 1839 0 -chrXII 814028 815873 HC_gene_5997_tx_205 2 + 814028 815873 . 1 1846 0 -chrXII 814028 815874 HC_gene_5997_tx_206 1 + 814028 815874 . 1 1847 0 -chrXII 814028 815876 HC_gene_5997_tx_207 1 + 814028 815876 . 1 1849 0 -chrXII 814028 815877 HC_gene_5997_tx_208 1 + 814028 815877 . 1 1850 0 -chrXII 814028 815879 HC_gene_5997_tx_209 1 + 814028 815879 . 1 1852 0 -chrXII 814028 815880 HC_gene_5997_tx_210 4 + 814028 815880 . 1 1853 0 -chrXII 814028 815882 HC_gene_5997_tx_211 2 + 814028 815882 . 1 1855 0 -chrXII 814028 815883 HC_gene_5997_tx_212 1 + 814028 815883 . 1 1856 0 -chrXII 814028 815938 HC_gene_5997_tx_213 1 + 814028 815938 . 1 1911 0 -chrXII 814028 816127 HC_gene_5997_tx_214 1 + 814028 816127 . 1 2100 0 -chrXII 814028 817827 HC_gene_5997_tx_260 1 + 814028 817827 . 2 2379,1221 0,2579 -chrXII 814260 815828 HC_gene_5997_tx_215 4 + 814260 815828 . 1 1569 0 -chrXII 814260 815829 HC_gene_5997_tx_216 1 + 814260 815829 . 1 1570 0 -chrXII 814260 815831 HC_gene_5997_tx_217 2 + 814260 815831 . 1 1572 0 -chrXII 814260 815833 HC_gene_5997_tx_218 1 + 814260 815833 . 2 961,568 0,1006 -chrXII 814260 815834 HC_gene_5997_tx_219 2 + 814260 815834 . 1 1575 0 -chrXII 814260 815836 HC_gene_5997_tx_220 1 + 814260 815836 . 1 1577 0 -chrXII 814260 815838 HC_gene_5997_tx_221 2 + 814260 815838 . 1 1579 0 -chrXII 814260 815846 HC_gene_5997_tx_222 5 + 814260 815846 . 1 1587 0 -chrXII 814260 815850 HC_gene_5997_tx_223 1 + 814260 815850 . 1 1591 0 -chrXII 814260 815851 HC_gene_5997_tx_224 1 + 814260 815851 . 1 1592 0 -chrXII 814260 815852 HC_gene_5997_tx_225 1 + 814260 815852 . 1 1593 0 -chrXII 814260 815855 HC_gene_5997_tx_226 1 + 814260 815855 . 1 1596 0 -chrXII 814260 815858 HC_gene_5997_tx_227 3 + 814260 815858 . 1 1599 0 -chrXII 814260 815859 HC_gene_5997_tx_228 1 + 814260 815859 . 1 1600 0 -chrXII 814260 815860 HC_gene_5997_tx_229 1 + 814260 815860 . 1 1601 0 -chrXII 814260 815861 HC_gene_5997_tx_230 2 + 814260 815861 . 1 1602 0 -chrXII 814260 815862 HC_gene_5997_tx_231 1 + 814260 815862 . 1 1603 0 -chrXII 814260 815866 HC_gene_5997_tx_232 1 + 814260 815866 . 1 1607 0 -chrXII 814260 815869 HC_gene_5997_tx_233 1 + 814260 815869 . 1 1610 0 -chrXII 814260 815874 HC_gene_5997_tx_234 1 + 814260 815874 . 1 1615 0 -chrXII 814260 815876 HC_gene_5997_tx_235 1 + 814260 815876 . 1 1617 0 -chrXII 814260 815879 HC_gene_5997_tx_236 2 + 814260 815879 . 1 1620 0 -chrXII 814260 815880 HC_gene_5997_tx_237 2 + 814260 815880 . 1 1621 0 -chrXII 814260 815881 HC_gene_5997_tx_238 1 + 814260 815881 . 1 1622 0 -chrXII 814260 815882 HC_gene_5997_tx_239 2 + 814260 815882 . 1 1623 0 -chrXII 814260 815937 HC_gene_5997_tx_240 1 + 814260 815937 . 1 1678 0 -chrXII 814260 816127 HC_gene_5997_tx_241 1 + 814260 816127 . 1 1868 0 -chrXII 814418 815828 HC_gene_5997_tx_242 1 + 814418 815828 . 1 1411 0 -chrXII 814418 815828 HC_gene_5997_tx_243 1 + 814418 815828 . 2 658,633 0,778 -chrXII 814418 815832 HC_gene_5997_tx_244 1 + 814418 815832 . 1 1415 0 -chrXII 814418 815833 HC_gene_5997_tx_245 1 + 814418 815833 . 1 1416 0 -chrXII 814418 815837 HC_gene_5997_tx_246 1 + 814418 815837 . 1 1420 0 -chrXII 814418 815838 HC_gene_5997_tx_247 1 + 814418 815838 . 1 1421 0 -chrXII 814418 815846 HC_gene_5997_tx_248 2 + 814418 815846 . 1 1429 0 -chrXII 814418 815860 HC_gene_5997_tx_249 1 + 814418 815860 . 1 1443 0 -chrXII 814418 815862 HC_gene_5997_tx_250 1 + 814418 815862 . 1 1445 0 -chrXII 814418 815873 HC_gene_5997_tx_251 1 + 814418 815873 . 1 1456 0 -chrXII 814418 815874 HC_gene_5997_tx_252 1 + 814418 815874 . 1 1457 0 -chrXII 814418 815876 HC_gene_5997_tx_253 3 + 814418 815876 . 1 1459 0 -chrXII 814418 815880 HC_gene_5997_tx_254 2 + 814418 815880 . 1 1463 0 -chrXII 814418 815882 HC_gene_5997_tx_255 1 + 814418 815882 . 1 1465 0 -chrXII 814418 815883 HC_gene_5997_tx_256 1 + 814418 815883 . 1 1466 0 -chrXII 814418 815946 HC_gene_5997_tx_257 1 + 814418 815946 . 1 1529 0 -chrXII 814418 815963 HC_gene_5997_tx_258 1 + 814418 815963 . 1 1546 0 -chrXII 814782 815828 HC_gene_5997_tx_261 2 + 814782 815828 . 1 1047 0 -chrXII 814782 815829 HC_gene_5997_tx_262 3 + 814782 815829 . 1 1048 0 -chrXII 814782 815830 HC_gene_5997_tx_263 1 + 814782 815830 . 1 1049 0 -chrXII 814782 815831 HC_gene_5997_tx_264 1 + 814782 815831 . 1 1050 0 -chrXII 814782 815833 HC_gene_5997_tx_265 1 + 814782 815833 . 1 1052 0 -chrXII 814782 815834 HC_gene_5997_tx_266 1 + 814782 815834 . 1 1053 0 -chrXII 814782 815835 HC_gene_5997_tx_267 1 + 814782 815835 . 1 1054 0 -chrXII 814782 815837 HC_gene_5997_tx_268 3 + 814782 815837 . 1 1056 0 -chrXII 814782 815838 HC_gene_5997_tx_269 3 + 814782 815838 . 1 1057 0 -chrXII 814782 815844 HC_gene_5997_tx_270 1 + 814782 815844 . 1 1063 0 -chrXII 814782 815846 HC_gene_5997_tx_271 2 + 814782 815846 . 1 1065 0 -chrXII 814782 815849 HC_gene_5997_tx_272 1 + 814782 815849 . 1 1068 0 -chrXII 814782 815851 HC_gene_5997_tx_273 1 + 814782 815851 . 1 1070 0 -chrXII 814782 815856 HC_gene_5997_tx_274 2 + 814782 815856 . 1 1075 0 -chrXII 814782 815858 HC_gene_5997_tx_275 4 + 814782 815858 . 1 1077 0 -chrXII 814782 815859 HC_gene_5997_tx_276 1 + 814782 815859 . 1 1078 0 -chrXII 814782 815860 HC_gene_5997_tx_277 2 + 814782 815860 . 1 1079 0 -chrXII 814782 815861 HC_gene_5997_tx_278 1 + 814782 815861 . 1 1080 0 -chrXII 814782 815866 HC_gene_5997_tx_279 1 + 814782 815866 . 1 1085 0 -chrXII 814782 815879 HC_gene_5997_tx_280 1 + 814782 815879 . 1 1098 0 -chrXII 814782 815880 HC_gene_5997_tx_281 4 + 814782 815880 . 1 1099 0 -chrXII 814782 815881 HC_gene_5997_tx_282 1 + 814782 815881 . 1 1100 0 -chrXII 814782 815882 HC_gene_5997_tx_283 4 + 814782 815882 . 1 1101 0 -chrXII 814782 815947 HC_gene_5997_tx_284 1 + 814782 815947 . 1 1166 0 -chrXII 814782 816536 HC_gene_5997_tx_364 1 + 814782 816536 . 1 1755 0 -chrXII 814983 815828 HC_gene_5997_tx_285 13 + 814983 815828 . 1 846 0 -chrXII 814983 815828 HC_gene_5997_tx_286 1 + 814983 815828 . 2 193,593 0,253 -chrXII 814983 815829 HC_gene_5997_tx_287 5 + 814983 815829 . 1 847 0 -chrXII 814983 815830 HC_gene_5997_tx_288 1 + 814983 815830 . 1 848 0 -chrXII 814983 815833 HC_gene_5997_tx_289 1 + 814983 815833 . 1 851 0 -chrXII 814983 815834 HC_gene_5997_tx_290 2 + 814983 815834 . 1 852 0 -chrXII 814983 815837 HC_gene_5997_tx_291 3 + 814983 815837 . 1 855 0 -chrXII 814983 815837 HC_gene_5997_tx_292 1 + 814983 815837 . 2 343,429 0,426 -chrXII 814983 815838 HC_gene_5997_tx_293 12 + 814983 815838 . 1 856 0 -chrXII 814983 815839 HC_gene_5997_tx_294 2 + 814983 815839 . 1 857 0 -chrXII 814983 815840 HC_gene_5997_tx_295 3 + 814983 815840 . 1 858 0 -chrXII 814983 815844 HC_gene_5997_tx_296 1 + 814983 815844 . 1 862 0 -chrXII 814983 815845 HC_gene_5997_tx_297 1 + 814983 815845 . 1 863 0 -chrXII 814983 815846 HC_gene_5997_tx_298 10 + 814983 815846 . 1 864 0 -chrXII 814983 815848 HC_gene_5997_tx_299 2 + 814983 815848 . 1 866 0 -chrXII 814983 815850 HC_gene_5997_tx_300 1 + 814983 815850 . 1 868 0 -chrXII 814983 815851 HC_gene_5997_tx_301 1 + 814983 815851 . 1 869 0 -chrXII 814983 815852 HC_gene_5997_tx_302 1 + 814983 815852 . 1 870 0 -chrXII 814983 815854 HC_gene_5997_tx_303 1 + 814983 815854 . 1 872 0 -chrXII 814983 815855 HC_gene_5997_tx_304 2 + 814983 815855 . 1 873 0 -chrXII 814983 815857 HC_gene_5997_tx_305 1 + 814983 815857 . 1 875 0 -chrXII 814983 815858 HC_gene_5997_tx_306 2 + 814983 815858 . 1 876 0 -chrXII 814983 815859 HC_gene_5997_tx_307 2 + 814983 815859 . 1 877 0 -chrXII 814983 815860 HC_gene_5997_tx_308 3 + 814983 815860 . 1 878 0 -chrXII 814983 815861 HC_gene_5997_tx_309 7 + 814983 815861 . 1 879 0 -chrXII 814983 815862 HC_gene_5997_tx_310 1 + 814983 815862 . 1 880 0 -chrXII 814983 815866 HC_gene_5997_tx_311 3 + 814983 815866 . 1 884 0 -chrXII 814983 815868 HC_gene_5997_tx_312 2 + 814983 815868 . 1 886 0 -chrXII 814983 815870 HC_gene_5997_tx_313 1 + 814983 815870 . 1 888 0 -chrXII 814983 815873 HC_gene_5997_tx_314 2 + 814983 815873 . 1 891 0 -chrXII 814983 815874 HC_gene_5997_tx_315 6 + 814983 815874 . 1 892 0 -chrXII 814983 815876 HC_gene_5997_tx_316 4 + 814983 815876 . 1 894 0 -chrXII 814983 815879 HC_gene_5997_tx_317 3 + 814983 815879 . 1 897 0 -chrXII 814983 815880 HC_gene_5997_tx_318 4 + 814983 815880 . 1 898 0 -chrXII 814983 815881 HC_gene_5997_tx_319 3 + 814983 815881 . 1 899 0 -chrXII 814983 815882 HC_gene_5997_tx_320 3 + 814983 815882 . 1 900 0 -chrXII 814983 815883 HC_gene_5997_tx_321 1 + 814983 815883 . 1 901 0 -chrXII 814983 815953 HC_gene_5997_tx_322 1 + 814983 815953 . 1 971 0 -chrXII 814983 815963 HC_gene_5997_tx_323 1 + 814983 815963 . 1 981 0 -chrXII 814983 816127 HC_gene_5997_tx_324 1 + 814983 816127 . 1 1145 0 -chrXII 815152 815828 HC_gene_5997_tx_325 10 + 815152 815828 . 1 677 0 -chrXII 815152 815829 HC_gene_5997_tx_326 4 + 815152 815829 . 1 678 0 -chrXII 815152 815831 HC_gene_5997_tx_327 3 + 815152 815831 . 1 680 0 -chrXII 815152 815833 HC_gene_5997_tx_328 3 + 815152 815833 . 1 682 0 -chrXII 815152 815834 HC_gene_5997_tx_329 1 + 815152 815834 . 1 683 0 -chrXII 815152 815835 HC_gene_5997_tx_330 1 + 815152 815835 . 1 684 0 -chrXII 815152 815837 HC_gene_5997_tx_331 2 + 815152 815837 . 1 686 0 -chrXII 815152 815838 HC_gene_5997_tx_332 9 + 815152 815838 . 1 687 0 -chrXII 815152 815839 HC_gene_5997_tx_333 3 + 815152 815839 . 1 688 0 -chrXII 815152 815840 HC_gene_5997_tx_334 2 + 815152 815840 . 1 689 0 -chrXII 815152 815842 HC_gene_5997_tx_335 1 + 815152 815842 . 1 691 0 -chrXII 815152 815843 HC_gene_5997_tx_336 2 + 815152 815843 . 1 692 0 -chrXII 815152 815845 HC_gene_5997_tx_337 1 + 815152 815845 . 1 694 0 -chrXII 815152 815846 HC_gene_5997_tx_338 10 + 815152 815846 . 1 695 0 -chrXII 815152 815848 HC_gene_5997_tx_339 6 + 815152 815848 . 1 697 0 -chrXII 815152 815850 HC_gene_5997_tx_340 2 + 815152 815850 . 1 699 0 -chrXII 815152 815851 HC_gene_5997_tx_341 2 + 815152 815851 . 1 700 0 -chrXII 815152 815853 HC_gene_5997_tx_342 1 + 815152 815853 . 1 702 0 -chrXII 815152 815855 HC_gene_5997_tx_343 1 + 815152 815855 . 1 704 0 -chrXII 815152 815858 HC_gene_5997_tx_344 5 + 815152 815858 . 1 707 0 -chrXII 815152 815859 HC_gene_5997_tx_345 1 + 815152 815859 . 1 708 0 -chrXII 815152 815860 HC_gene_5997_tx_346 1 + 815152 815860 . 1 709 0 -chrXII 815152 815861 HC_gene_5997_tx_347 4 + 815152 815861 . 1 710 0 -chrXII 815152 815862 HC_gene_5997_tx_348 4 + 815152 815862 . 1 711 0 -chrXII 815152 815866 HC_gene_5997_tx_349 2 + 815152 815866 . 1 715 0 -chrXII 815152 815870 HC_gene_5997_tx_350 2 + 815152 815870 . 1 719 0 -chrXII 815152 815873 HC_gene_5997_tx_351 2 + 815152 815873 . 1 722 0 -chrXII 815152 815874 HC_gene_5997_tx_352 8 + 815152 815874 . 1 723 0 -chrXII 815152 815876 HC_gene_5997_tx_353 13 + 815152 815876 . 1 725 0 -chrXII 815152 815879 HC_gene_5997_tx_354 4 + 815152 815879 . 1 728 0 -chrXII 815152 815880 HC_gene_5997_tx_355 6 + 815152 815880 . 1 729 0 -chrXII 815152 815881 HC_gene_5997_tx_356 6 + 815152 815881 . 1 730 0 -chrXII 815152 815882 HC_gene_5997_tx_357 17 + 815152 815882 . 1 731 0 -chrXII 815152 815883 HC_gene_5997_tx_358 3 + 815152 815883 . 1 732 0 -chrXII 815152 815884 HC_gene_5997_tx_359 1 + 815152 815884 . 1 733 0 -chrXII 815152 815886 HC_gene_5997_tx_360 2 + 815152 815886 . 1 735 0 -chrXII 815152 815938 HC_gene_5997_tx_361 1 + 815152 815938 . 1 787 0 -chrXII 815152 815959 HC_gene_5997_tx_362 1 + 815152 815959 . 1 808 0 -chrXII 815152 816127 HC_gene_5997_tx_363 4 + 815152 816127 . 1 976 0 -chrXII 815152 817827 HC_gene_5997_tx_365 1 + 815152 817827 . 1 2676 0 -chrXII 815949 816819 MC_gene_6409_tx_1 1 - 815949 816819 . 1 871 0 -chrXII 817053 817440 MC_gene_6410_tx_1 1 - 817053 817440 . 1 388 0 -chrXII 817730 818363 HC_gene_6411_tx_1 7 - 817730 818363 . 1 634 0 -chrXII 818047 818414 LC_gene_5998_tx_1 1 + 818047 818414 . 1 368 0 -chrXII 818108 818363 HC_gene_6411_tx_2 70 - 818108 818363 . 1 256 0 -chrXII 819294 820248 HC_gene_5999_tx_1 272 + 819294 820248 . 2 37,471 0,484 -chrXII 819294 820248 HC_gene_5999_tx_2 45 + 819294 820248 . 1 955 0 -chrXII 819505 820248 HC_gene_5999_tx_3 10 + 819505 820248 . 1 744 0 -chrXII 819810 820248 HC_gene_5999_tx_4 1621 + 819810 820248 . 1 439 0 -chrXII 819810 820509 HC_gene_5999_tx_5 10 + 819810 820509 . 1 700 0 -chrXII 820027 820248 HC_gene_5999_tx_6 32 + 820027 820248 . 1 222 0 -chrXII 820473 822201 HC_gene_6000_tx_1 4 + 820473 822201 . 1 1729 0 -chrXII 820473 822267 HC_gene_6000_tx_2 2 + 820473 822267 . 1 1795 0 -chrXII 821090 822201 HC_gene_6000_tx_3 1 + 821090 822201 . 1 1112 0 -chrXII 821386 822267 HC_gene_6000_tx_4 1 + 821386 822267 . 1 882 0 -chrXII 822132 822647 HC_gene_6412_tx_1 124 - 822132 822647 . 1 516 0 -chrXII 822602 823363 MC_gene_6001_tx_1 1 + 822602 823363 . 1 762 0 -chrXII 823068 824260 MC_gene_6002_tx_1 1 + 823068 824260 . 2 371,763 0,430 -chrXII 823289 824125 HC_gene_6413_tx_1 1 - 823289 824125 . 1 837 0 -chrXII 823289 826540 HC_gene_6413_tx_2 1 - 823289 826540 . 1 3252 0 -chrXII 823289 826540 HC_gene_6413_tx_3 1 - 823289 826540 . 2 142,3043 0,209 -chrXII 823355 823864 HC_gene_6413_tx_8 1 - 823355 823864 . 2 83,365 0,145 -chrXII 823355 823864 HC_gene_6413_tx_9 1 - 823355 823864 . 2 83,359 0,151 -chrXII 823499 823864 HC_gene_6413_tx_10 1 - 823499 823864 . 1 366 0 -chrXII 823499 824125 HC_gene_6413_tx_11 9 - 823499 824125 . 1 627 0 -chrXII 823499 824301 HC_gene_6413_tx_13 4 - 823499 824301 . 1 803 0 -chrXII 823499 826540 HC_gene_6413_tx_4 2 - 823499 826540 . 1 3042 0 -chrXII 823499 826540 HC_gene_6413_tx_5 1 - 823499 826540 . 2 1813,1181 0,1861 -chrXII 823608 823864 HC_gene_6413_tx_15 3 - 823608 823864 . 1 257 0 -chrXII 823608 824125 HC_gene_6413_tx_12 5 - 823608 824125 . 1 518 0 -chrXII 823608 824301 HC_gene_6413_tx_14 7 - 823608 824301 . 1 694 0 -chrXII 823608 826243 HC_gene_6413_tx_6 1 - 823608 826243 . 1 2636 0 -chrXII 823608 826540 HC_gene_6413_tx_7 9 - 823608 826540 . 1 2933 0 -chrXII 826724 826984 MC_gene_6003_tx_1 1 + 826724 826984 . 1 261 0 -chrXII 826860 827342 HC_gene_6414_tx_1 5 - 826860 827342 . 1 483 0 -chrXII 826860 827442 HC_gene_6414_tx_2 12 - 826860 827442 . 1 583 0 -chrXII 826860 827515 HC_gene_6414_tx_3 4 - 826860 827515 . 1 656 0 -chrXII 826860 827904 HC_gene_6414_tx_4 106 - 826860 827904 . 1 1045 0 -chrXII 826860 827904 HC_gene_6414_tx_5 1 - 826860 827904 . 2 647,253 0,792 -chrXII 826860 827904 HC_gene_6414_tx_6 1 - 826860 827904 . 2 406,118 0,927 -chrXII 826860 827904 HC_gene_6414_tx_7 1 - 826860 827904 . 2 573,413 0,632 -chrXII 827867 828333 HC_gene_6415_tx_1 15 - 827867 828333 . 1 467 0 -chrXII 828297 828644 HC_gene_6004_tx_1 1 + 828297 828644 . 1 348 0 -chrXII 828682 829521 HC_gene_6005_tx_1 201 + 828682 829521 . 1 840 0 -chrXII 828858 829521 HC_gene_6005_tx_2 30 + 828858 829521 . 1 664 0 -chrXII 828967 829521 HC_gene_6005_tx_3 35 + 828967 829521 . 1 555 0 -chrXII 829132 829521 HC_gene_6005_tx_4 21 + 829132 829521 . 1 390 0 -chrXII 829355 829604 HC_gene_6416_tx_1 22 - 829355 829604 . 1 250 0 -chrXII 829355 829730 HC_gene_6416_tx_2 6 - 829355 829730 . 1 376 0 -chrXII 829355 829809 HC_gene_6416_tx_3 18 - 829355 829809 . 1 455 0 -chrXII 829355 829911 HC_gene_6416_tx_4 23 - 829355 829911 . 1 557 0 -chrXII 829355 830250 HC_gene_6416_tx_5 12 - 829355 830250 . 1 896 0 -chrXII 829355 830379 HC_gene_6416_tx_6 126 - 829355 830379 . 1 1025 0 -chrXII 829355 830379 HC_gene_6416_tx_7 1 - 829355 830379 . 2 833,109 0,916 -chrXII 829355 830379 HC_gene_6416_tx_8 1 - 829355 830379 . 2 50,937 0,88 -chrXII 829355 830379 HC_gene_6416_tx_9 1 - 829355 830379 . 2 48,927 0,98 -chrXII 829355 830379 HC_gene_6416_tx_10 1 - 829355 830379 . 2 58,916 0,109 -chrXII 831000 833498 HC_gene_6006_tx_1 2 + 831000 833498 . 1 2499 0 -chrXII 831000 833637 HC_gene_6006_tx_2 4 + 831000 833637 . 1 2638 0 -chrXII 831057 832263 LC_gene_6417_tx_1 1 - 831057 832263 . 1 1207 0 -chrXII 832475 833662 LC_gene_6418_tx_1 1 - 832475 833662 . 1 1188 0 -chrXII 833879 836316 HC_gene_6007_tx_1 7 + 833879 836316 . 1 2438 0 -chrXII 833879 836316 HC_gene_6007_tx_2 1 + 833879 836316 . 2 2000,389 0,2049 -chrXII 836190 836732 HC_gene_6419_tx_1 82 - 836190 836732 . 1 543 0 -chrXII 836190 837050 HC_gene_6419_tx_2 38 - 836190 837050 . 1 861 0 -chrXII 836190 837152 HC_gene_6419_tx_3 50 - 836190 837152 . 1 963 0 -chrXII 836190 837399 HC_gene_6419_tx_4 415 - 836190 837399 . 1 1210 0 -chrXII 837454 837786 HC_gene_6420_tx_1 4 - 837454 837786 . 1 333 0 -chrXII 837454 838691 HC_gene_6420_tx_2 1 - 837454 838691 . 1 1238 0 -chrXII 837766 838691 HC_gene_6420_tx_3 1 - 837766 838691 . 1 926 0 -chrXII 837766 838843 HC_gene_6420_tx_4 1 - 837766 838843 . 1 1078 0 -chrXII 837766 839333 HC_gene_6420_tx_5 1 - 837766 839333 . 2 348,1158 0,410 -chrXII 837767 839317 HC_gene_6420_tx_6 1 - 837767 839317 . 1 1551 0 -chrXII 837770 838449 HC_gene_6420_tx_7 1 - 837770 838449 . 1 680 0 -chrXII 837770 838864 HC_gene_6420_tx_8 1 - 837770 838864 . 1 1095 0 -chrXII 837770 839321 HC_gene_6420_tx_9 1 - 837770 839321 . 1 1552 0 -chrXII 837777 838374 HC_gene_6420_tx_10 1 - 837777 838374 . 1 598 0 -chrXII 837777 838857 HC_gene_6420_tx_11 1 - 837777 838857 . 1 1081 0 -chrXII 837777 839318 HC_gene_6420_tx_12 1 - 837777 839318 . 1 1542 0 -chrXII 837778 838581 HC_gene_6420_tx_13 1 - 837778 838581 . 1 804 0 -chrXII 837780 839315 HC_gene_6420_tx_14 1 - 837780 839315 . 1 1536 0 -chrXII 837780 839318 HC_gene_6420_tx_15 1 - 837780 839318 . 1 1539 0 -chrXII 837781 838344 HC_gene_6420_tx_16 1 - 837781 838344 . 1 564 0 -chrXII 837783 838444 HC_gene_6420_tx_17 1 - 837783 838444 . 1 662 0 -chrXII 837787 838843 HC_gene_6420_tx_18 1 - 837787 838843 . 1 1057 0 -chrXII 837788 838209 HC_gene_6420_tx_287 1 - 837788 838209 . 1 422 0 -chrXII 837788 839333 HC_gene_6420_tx_19 1 - 837788 839333 . 1 1546 0 -chrXII 837798 838209 HC_gene_6420_tx_288 1 - 837798 838209 . 1 412 0 -chrXII 837798 838458 HC_gene_6420_tx_20 2 - 837798 838458 . 1 661 0 -chrXII 837798 839333 HC_gene_6420_tx_21 1 - 837798 839333 . 2 652,840 0,696 -chrXII 837799 839333 HC_gene_6420_tx_22 1 - 837799 839333 . 1 1535 0 -chrXII 837800 838691 HC_gene_6420_tx_23 1 - 837800 838691 . 1 892 0 -chrXII 837800 839333 HC_gene_6420_tx_24 1 - 837800 839333 . 1 1534 0 -chrXII 837803 838209 HC_gene_6420_tx_289 2 - 837803 838209 . 1 407 0 -chrXII 837803 838458 HC_gene_6420_tx_25 7 - 837803 838458 . 1 656 0 -chrXII 837803 838691 HC_gene_6420_tx_26 3 - 837803 838691 . 1 889 0 -chrXII 837803 838843 HC_gene_6420_tx_27 2 - 837803 838843 . 1 1041 0 -chrXII 837803 839333 HC_gene_6420_tx_28 4 - 837803 839333 . 1 1531 0 -chrXII 837806 838458 HC_gene_6420_tx_29 1 - 837806 838458 . 1 653 0 -chrXII 837806 839333 HC_gene_6420_tx_30 2 - 837806 839333 . 1 1528 0 -chrXII 837807 838209 HC_gene_6420_tx_290 2 - 837807 838209 . 1 403 0 -chrXII 837807 838458 HC_gene_6420_tx_31 1 - 837807 838458 . 1 652 0 -chrXII 837807 838691 HC_gene_6420_tx_32 1 - 837807 838691 . 1 885 0 -chrXII 837807 838843 HC_gene_6420_tx_33 1 - 837807 838843 . 1 1037 0 -chrXII 837807 839333 HC_gene_6420_tx_34 3 - 837807 839333 . 1 1527 0 -chrXII 837809 838209 HC_gene_6420_tx_291 1 - 837809 838209 . 1 401 0 -chrXII 837809 838458 HC_gene_6420_tx_35 1 - 837809 838458 . 1 650 0 -chrXII 837809 838691 HC_gene_6420_tx_36 1 - 837809 838691 . 1 883 0 -chrXII 837811 838209 HC_gene_6420_tx_292 1 - 837811 838209 . 1 399 0 -chrXII 837811 838458 HC_gene_6420_tx_37 1 - 837811 838458 . 1 648 0 -chrXII 837811 839091 HC_gene_6420_tx_38 1 - 837811 839091 . 1 1281 0 -chrXII 837811 839333 HC_gene_6420_tx_39 4 - 837811 839333 . 1 1523 0 -chrXII 837812 839333 HC_gene_6420_tx_40 2 - 837812 839333 . 1 1522 0 -chrXII 837813 839333 HC_gene_6420_tx_41 3 - 837813 839333 . 1 1521 0 -chrXII 837814 838691 HC_gene_6420_tx_42 1 - 837814 838691 . 1 878 0 -chrXII 837814 838843 HC_gene_6420_tx_43 1 - 837814 838843 . 1 1030 0 -chrXII 837814 839333 HC_gene_6420_tx_44 2 - 837814 839333 . 1 1520 0 -chrXII 837814 839333 HC_gene_6420_tx_45 1 - 837814 839333 . 2 648,785 0,735 -chrXII 837815 838209 HC_gene_6420_tx_293 1 - 837815 838209 . 1 395 0 -chrXII 837815 838458 HC_gene_6420_tx_46 1 - 837815 838458 . 1 644 0 -chrXII 837815 838691 HC_gene_6420_tx_47 3 - 837815 838691 . 1 877 0 -chrXII 837815 839333 HC_gene_6420_tx_48 3 - 837815 839333 . 1 1519 0 -chrXII 837817 838691 HC_gene_6420_tx_49 2 - 837817 838691 . 1 875 0 -chrXII 837818 839333 HC_gene_6420_tx_50 7 - 837818 839333 . 1 1516 0 -chrXII 837820 839091 HC_gene_6420_tx_51 1 - 837820 839091 . 1 1272 0 -chrXII 837821 838458 HC_gene_6420_tx_52 3 - 837821 838458 . 1 638 0 -chrXII 837821 838691 HC_gene_6420_tx_53 3 - 837821 838691 . 1 871 0 -chrXII 837821 838843 HC_gene_6420_tx_54 1 - 837821 838843 . 1 1023 0 -chrXII 837821 839333 HC_gene_6420_tx_55 1 - 837821 839333 . 1 1513 0 -chrXII 837822 838691 HC_gene_6420_tx_56 1 - 837822 838691 . 1 870 0 -chrXII 837822 839091 HC_gene_6420_tx_57 1 - 837822 839091 . 1 1270 0 -chrXII 837822 839333 HC_gene_6420_tx_58 3 - 837822 839333 . 1 1512 0 -chrXII 837823 838209 HC_gene_6420_tx_294 1 - 837823 838209 . 1 387 0 -chrXII 837823 838691 HC_gene_6420_tx_59 2 - 837823 838691 . 1 869 0 -chrXII 837823 839091 HC_gene_6420_tx_60 1 - 837823 839091 . 1 1269 0 -chrXII 837823 839333 HC_gene_6420_tx_61 5 - 837823 839333 . 1 1511 0 -chrXII 837825 838691 HC_gene_6420_tx_62 1 - 837825 838691 . 1 867 0 -chrXII 837825 838843 HC_gene_6420_tx_63 1 - 837825 838843 . 1 1019 0 -chrXII 837825 839333 HC_gene_6420_tx_64 1 - 837825 839333 . 1 1509 0 -chrXII 837826 838458 HC_gene_6420_tx_65 1 - 837826 838458 . 1 633 0 -chrXII 837826 838691 HC_gene_6420_tx_66 1 - 837826 838691 . 1 866 0 -chrXII 837826 839333 HC_gene_6420_tx_67 1 - 837826 839333 . 1 1508 0 -chrXII 837828 838691 HC_gene_6420_tx_68 1 - 837828 838691 . 1 864 0 -chrXII 837828 838843 HC_gene_6420_tx_69 1 - 837828 838843 . 1 1016 0 -chrXII 837829 839333 HC_gene_6420_tx_70 1 - 837829 839333 . 1 1505 0 -chrXII 837830 838691 HC_gene_6420_tx_71 1 - 837830 838691 . 1 862 0 -chrXII 837830 839333 HC_gene_6420_tx_72 2 - 837830 839333 . 1 1504 0 -chrXII 837831 838691 HC_gene_6420_tx_73 1 - 837831 838691 . 1 861 0 -chrXII 837831 839333 HC_gene_6420_tx_74 1 - 837831 839333 . 1 1503 0 -chrXII 837832 838209 HC_gene_6420_tx_295 1 - 837832 838209 . 1 378 0 -chrXII 837832 838458 HC_gene_6420_tx_75 2 - 837832 838458 . 1 627 0 -chrXII 837832 838691 HC_gene_6420_tx_76 3 - 837832 838691 . 1 860 0 -chrXII 837832 838956 HC_gene_6420_tx_77 1 - 837832 838956 . 1 1125 0 -chrXII 837832 839091 HC_gene_6420_tx_78 1 - 837832 839091 . 1 1260 0 -chrXII 837832 839333 HC_gene_6420_tx_79 3 - 837832 839333 . 1 1502 0 -chrXII 837833 838458 HC_gene_6420_tx_80 2 - 837833 838458 . 1 626 0 -chrXII 837833 839333 HC_gene_6420_tx_81 1 - 837833 839333 . 1 1501 0 -chrXII 837836 838691 HC_gene_6420_tx_82 1 - 837836 838691 . 1 856 0 -chrXII 837837 838458 HC_gene_6420_tx_83 1 - 837837 838458 . 1 622 0 -chrXII 837837 838691 HC_gene_6420_tx_84 1 - 837837 838691 . 1 855 0 -chrXII 837837 839333 HC_gene_6420_tx_85 2 - 837837 839333 . 1 1497 0 -chrXII 837838 838209 HC_gene_6420_tx_296 4 - 837838 838209 . 1 372 0 -chrXII 837838 838458 HC_gene_6420_tx_86 2 - 837838 838458 . 1 621 0 -chrXII 837838 838691 HC_gene_6420_tx_87 2 - 837838 838691 . 1 854 0 -chrXII 837838 838956 HC_gene_6420_tx_88 1 - 837838 838956 . 1 1119 0 -chrXII 837838 839333 HC_gene_6420_tx_89 14 - 837838 839333 . 1 1496 0 -chrXII 837839 838458 HC_gene_6420_tx_90 3 - 837839 838458 . 1 620 0 -chrXII 837839 838691 HC_gene_6420_tx_91 3 - 837839 838691 . 1 853 0 -chrXII 837839 838843 HC_gene_6420_tx_92 2 - 837839 838843 . 1 1005 0 -chrXII 837839 838956 HC_gene_6420_tx_93 1 - 837839 838956 . 1 1118 0 -chrXII 837839 839333 HC_gene_6420_tx_94 5 - 837839 839333 . 1 1495 0 -chrXII 837840 838209 HC_gene_6420_tx_297 1 - 837840 838209 . 1 370 0 -chrXII 837840 838843 HC_gene_6420_tx_95 1 - 837840 838843 . 1 1004 0 -chrXII 837840 839091 HC_gene_6420_tx_96 1 - 837840 839091 . 1 1252 0 -chrXII 837840 839333 HC_gene_6420_tx_97 1 - 837840 839333 . 1 1494 0 -chrXII 837841 838209 HC_gene_6420_tx_298 1 - 837841 838209 . 1 369 0 -chrXII 837841 838458 HC_gene_6420_tx_98 1 - 837841 838458 . 1 618 0 -chrXII 837841 838691 HC_gene_6420_tx_99 1 - 837841 838691 . 1 851 0 -chrXII 837841 838956 HC_gene_6420_tx_100 1 - 837841 838956 . 1 1116 0 -chrXII 837841 839333 HC_gene_6420_tx_101 1 - 837841 839333 . 1 1493 0 -chrXII 837841 839333 HC_gene_6420_tx_102 1 - 837841 839333 . 2 1246,129 0,1364 -chrXII 837842 838691 HC_gene_6420_tx_103 1 - 837842 838691 . 1 850 0 -chrXII 837842 838843 HC_gene_6420_tx_104 2 - 837842 838843 . 1 1002 0 -chrXII 837842 839333 HC_gene_6420_tx_105 3 - 837842 839333 . 1 1492 0 -chrXII 837843 838691 HC_gene_6420_tx_106 2 - 837843 838691 . 1 849 0 -chrXII 837843 838843 HC_gene_6420_tx_107 1 - 837843 838843 . 1 1001 0 -chrXII 837843 839333 HC_gene_6420_tx_108 4 - 837843 839333 . 1 1491 0 -chrXII 837844 838209 HC_gene_6420_tx_299 7 - 837844 838209 . 1 366 0 -chrXII 837844 838458 HC_gene_6420_tx_109 6 - 837844 838458 . 1 615 0 -chrXII 837844 838691 HC_gene_6420_tx_110 8 - 837844 838691 . 1 848 0 -chrXII 837844 838843 HC_gene_6420_tx_111 4 - 837844 838843 . 1 1000 0 -chrXII 837844 838956 HC_gene_6420_tx_112 4 - 837844 838956 . 1 1113 0 -chrXII 837844 839091 HC_gene_6420_tx_113 3 - 837844 839091 . 1 1248 0 -chrXII 837844 839333 HC_gene_6420_tx_114 25 - 837844 839333 . 1 1490 0 -chrXII 837844 839333 HC_gene_6420_tx_115 1 - 837844 839333 . 2 1215,210 0,1280 -chrXII 837844 839333 HC_gene_6420_tx_116 1 - 837844 839333 . 2 1342,66 0,1424 -chrXII 837845 838209 HC_gene_6420_tx_300 35 - 837845 838209 . 1 365 0 -chrXII 837845 838458 HC_gene_6420_tx_117 54 - 837845 838458 . 1 614 0 -chrXII 837845 838691 HC_gene_6420_tx_118 56 - 837845 838691 . 1 847 0 -chrXII 837845 838843 HC_gene_6420_tx_119 19 - 837845 838843 . 1 999 0 -chrXII 837845 838956 HC_gene_6420_tx_120 9 - 837845 838956 . 1 1112 0 -chrXII 837845 839091 HC_gene_6420_tx_121 9 - 837845 839091 . 1 1247 0 -chrXII 837845 839333 HC_gene_6420_tx_122 135 - 837845 839333 . 1 1489 0 -chrXII 837845 839333 HC_gene_6420_tx_123 1 - 837845 839333 . 2 41,1265 0,224 -chrXII 837846 838209 HC_gene_6420_tx_301 1 - 837846 838209 . 1 364 0 -chrXII 837846 838458 HC_gene_6420_tx_124 9 - 837846 838458 . 1 613 0 -chrXII 837846 838691 HC_gene_6420_tx_125 16 - 837846 838691 . 1 846 0 -chrXII 837846 838843 HC_gene_6420_tx_126 4 - 837846 838843 . 1 998 0 -chrXII 837846 838956 HC_gene_6420_tx_127 2 - 837846 838956 . 1 1111 0 -chrXII 837846 839333 HC_gene_6420_tx_128 40 - 837846 839333 . 1 1488 0 -chrXII 837847 839333 HC_gene_6420_tx_129 1 - 837847 839333 . 1 1487 0 -chrXII 837848 838843 HC_gene_6420_tx_130 1 - 837848 838843 . 1 996 0 -chrXII 837848 839333 HC_gene_6420_tx_131 2 - 837848 839333 . 1 1486 0 -chrXII 837849 838209 HC_gene_6420_tx_302 5 - 837849 838209 . 1 361 0 -chrXII 837849 838458 HC_gene_6420_tx_132 7 - 837849 838458 . 1 610 0 -chrXII 837849 838691 HC_gene_6420_tx_133 8 - 837849 838691 . 1 843 0 -chrXII 837849 838843 HC_gene_6420_tx_134 5 - 837849 838843 . 1 995 0 -chrXII 837849 838956 HC_gene_6420_tx_135 1 - 837849 838956 . 1 1108 0 -chrXII 837849 839091 HC_gene_6420_tx_136 2 - 837849 839091 . 1 1243 0 -chrXII 837849 839333 HC_gene_6420_tx_137 26 - 837849 839333 . 1 1485 0 -chrXII 837849 839333 HC_gene_6420_tx_138 1 - 837849 839333 . 2 37,1391 0,94 -chrXII 837850 838209 HC_gene_6420_tx_303 4 - 837850 838209 . 1 360 0 -chrXII 837850 838458 HC_gene_6420_tx_139 5 - 837850 838458 . 1 609 0 -chrXII 837850 838691 HC_gene_6420_tx_140 5 - 837850 838691 . 1 842 0 -chrXII 837850 839091 HC_gene_6420_tx_141 3 - 837850 839091 . 1 1242 0 -chrXII 837850 839333 HC_gene_6420_tx_142 11 - 837850 839333 . 1 1484 0 -chrXII 837851 838209 HC_gene_6420_tx_304 5 - 837851 838209 . 1 359 0 -chrXII 837851 838458 HC_gene_6420_tx_143 10 - 837851 838458 . 1 608 0 -chrXII 837851 838691 HC_gene_6420_tx_144 8 - 837851 838691 . 1 841 0 -chrXII 837851 838843 HC_gene_6420_tx_145 2 - 837851 838843 . 1 993 0 -chrXII 837851 838956 HC_gene_6420_tx_146 2 - 837851 838956 . 1 1106 0 -chrXII 837851 839091 HC_gene_6420_tx_147 1 - 837851 839091 . 1 1241 0 -chrXII 837851 839333 HC_gene_6420_tx_148 18 - 837851 839333 . 1 1483 0 -chrXII 837852 838209 HC_gene_6420_tx_305 3 - 837852 838209 . 1 358 0 -chrXII 837852 838458 HC_gene_6420_tx_149 14 - 837852 838458 . 1 607 0 -chrXII 837852 838691 HC_gene_6420_tx_150 13 - 837852 838691 . 1 840 0 -chrXII 837852 838843 HC_gene_6420_tx_151 1 - 837852 838843 . 1 992 0 -chrXII 837852 839091 HC_gene_6420_tx_152 1 - 837852 839091 . 1 1240 0 -chrXII 837852 839333 HC_gene_6420_tx_153 37 - 837852 839333 . 1 1482 0 -chrXII 837852 839333 HC_gene_6420_tx_154 1 - 837852 839333 . 2 751,684 0,798 -chrXII 837853 838209 HC_gene_6420_tx_306 1 - 837853 838209 . 1 357 0 -chrXII 837853 838458 HC_gene_6420_tx_155 4 - 837853 838458 . 1 606 0 -chrXII 837853 838691 HC_gene_6420_tx_156 1 - 837853 838691 . 1 839 0 -chrXII 837853 839333 HC_gene_6420_tx_157 7 - 837853 839333 . 1 1481 0 -chrXII 837854 838209 HC_gene_6420_tx_307 2 - 837854 838209 . 1 356 0 -chrXII 837854 838458 HC_gene_6420_tx_158 1 - 837854 838458 . 1 605 0 -chrXII 837854 838691 HC_gene_6420_tx_159 7 - 837854 838691 . 1 838 0 -chrXII 837854 838843 HC_gene_6420_tx_160 1 - 837854 838843 . 1 990 0 -chrXII 837854 838956 HC_gene_6420_tx_161 1 - 837854 838956 . 1 1103 0 -chrXII 837854 839333 HC_gene_6420_tx_162 19 - 837854 839333 . 1 1480 0 -chrXII 837855 838209 HC_gene_6420_tx_308 3 - 837855 838209 . 1 355 0 -chrXII 837855 838458 HC_gene_6420_tx_163 5 - 837855 838458 . 1 604 0 -chrXII 837855 838458 HC_gene_6420_tx_164 1 - 837855 838458 . 2 31,483 0,121 -chrXII 837855 838691 HC_gene_6420_tx_165 8 - 837855 838691 . 1 837 0 -chrXII 837855 838843 HC_gene_6420_tx_166 2 - 837855 838843 . 1 989 0 -chrXII 837855 838956 HC_gene_6420_tx_167 1 - 837855 838956 . 1 1102 0 -chrXII 837855 839091 HC_gene_6420_tx_168 1 - 837855 839091 . 1 1237 0 -chrXII 837855 839333 HC_gene_6420_tx_169 16 - 837855 839333 . 1 1479 0 -chrXII 837856 838209 HC_gene_6420_tx_309 2 - 837856 838209 . 1 354 0 -chrXII 837856 838458 HC_gene_6420_tx_170 6 - 837856 838458 . 1 603 0 -chrXII 837856 838691 HC_gene_6420_tx_171 2 - 837856 838691 . 1 836 0 -chrXII 837856 839091 HC_gene_6420_tx_172 2 - 837856 839091 . 1 1236 0 -chrXII 837856 839333 HC_gene_6420_tx_173 16 - 837856 839333 . 1 1478 0 -chrXII 837857 838209 HC_gene_6420_tx_310 1 - 837857 838209 . 1 353 0 -chrXII 837857 838458 HC_gene_6420_tx_174 2 - 837857 838458 . 1 602 0 -chrXII 837857 838691 HC_gene_6420_tx_175 2 - 837857 838691 . 1 835 0 -chrXII 837857 838843 HC_gene_6420_tx_176 2 - 837857 838843 . 1 987 0 -chrXII 837857 838956 HC_gene_6420_tx_177 1 - 837857 838956 . 1 1100 0 -chrXII 837857 839091 HC_gene_6420_tx_178 1 - 837857 839091 . 1 1235 0 -chrXII 837857 839333 HC_gene_6420_tx_179 5 - 837857 839333 . 1 1477 0 -chrXII 837858 838691 HC_gene_6420_tx_180 1 - 837858 838691 . 1 834 0 -chrXII 837858 839333 HC_gene_6420_tx_181 2 - 837858 839333 . 1 1476 0 -chrXII 837859 838458 HC_gene_6420_tx_182 2 - 837859 838458 . 1 600 0 -chrXII 837859 838691 HC_gene_6420_tx_183 4 - 837859 838691 . 1 833 0 -chrXII 837859 838843 HC_gene_6420_tx_184 1 - 837859 838843 . 1 985 0 -chrXII 837859 838956 HC_gene_6420_tx_185 1 - 837859 838956 . 1 1098 0 -chrXII 837859 839091 HC_gene_6420_tx_186 3 - 837859 839091 . 1 1233 0 -chrXII 837859 839333 HC_gene_6420_tx_187 9 - 837859 839333 . 1 1475 0 -chrXII 837860 838209 HC_gene_6420_tx_311 1 - 837860 838209 . 1 350 0 -chrXII 837860 838458 HC_gene_6420_tx_188 2 - 837860 838458 . 1 599 0 -chrXII 837860 838691 HC_gene_6420_tx_189 3 - 837860 838691 . 1 832 0 -chrXII 837860 839333 HC_gene_6420_tx_190 12 - 837860 839333 . 1 1474 0 -chrXII 837861 838458 HC_gene_6420_tx_191 3 - 837861 838458 . 1 598 0 -chrXII 837861 838691 HC_gene_6420_tx_192 1 - 837861 838691 . 1 831 0 -chrXII 837861 838843 HC_gene_6420_tx_193 2 - 837861 838843 . 1 983 0 -chrXII 837861 839333 HC_gene_6420_tx_194 4 - 837861 839333 . 1 1473 0 -chrXII 837862 839091 HC_gene_6420_tx_195 1 - 837862 839091 . 1 1230 0 -chrXII 837863 838458 HC_gene_6420_tx_196 1 - 837863 838458 . 1 596 0 -chrXII 837863 838691 HC_gene_6420_tx_197 2 - 837863 838691 . 1 829 0 -chrXII 837863 839091 HC_gene_6420_tx_198 1 - 837863 839091 . 1 1229 0 -chrXII 837863 839333 HC_gene_6420_tx_199 2 - 837863 839333 . 1 1471 0 -chrXII 837864 839333 HC_gene_6420_tx_200 1 - 837864 839333 . 1 1470 0 -chrXII 837866 838691 HC_gene_6420_tx_201 1 - 837866 838691 . 1 826 0 -chrXII 837866 839333 HC_gene_6420_tx_202 2 - 837866 839333 . 1 1468 0 -chrXII 837866 839333 HC_gene_6420_tx_203 1 - 837866 839333 . 2 606,463 0,1005 -chrXII 837867 838458 HC_gene_6420_tx_204 1 - 837867 838458 . 1 592 0 -chrXII 837867 839333 HC_gene_6420_tx_205 3 - 837867 839333 . 1 1467 0 -chrXII 837868 838209 HC_gene_6420_tx_312 1 - 837868 838209 . 1 342 0 -chrXII 837868 838458 HC_gene_6420_tx_206 1 - 837868 838458 . 1 591 0 -chrXII 837868 838691 HC_gene_6420_tx_207 1 - 837868 838691 . 1 824 0 -chrXII 837868 839091 HC_gene_6420_tx_208 1 - 837868 839091 . 1 1224 0 -chrXII 837868 839333 HC_gene_6420_tx_209 6 - 837868 839333 . 1 1466 0 -chrXII 837870 839333 HC_gene_6420_tx_210 1 - 837870 839333 . 1 1464 0 -chrXII 837871 838209 HC_gene_6420_tx_313 1 - 837871 838209 . 1 339 0 -chrXII 837871 839333 HC_gene_6420_tx_211 2 - 837871 839333 . 1 1463 0 -chrXII 837872 838458 HC_gene_6420_tx_212 1 - 837872 838458 . 1 587 0 -chrXII 837872 838691 HC_gene_6420_tx_213 1 - 837872 838691 . 1 820 0 -chrXII 837872 838843 HC_gene_6420_tx_214 1 - 837872 838843 . 1 972 0 -chrXII 837872 839333 HC_gene_6420_tx_215 10 - 837872 839333 . 1 1462 0 -chrXII 837873 838209 HC_gene_6420_tx_314 1 - 837873 838209 . 1 337 0 -chrXII 837873 838458 HC_gene_6420_tx_216 1 - 837873 838458 . 1 586 0 -chrXII 837873 838691 HC_gene_6420_tx_217 1 - 837873 838691 . 1 819 0 -chrXII 837873 838843 HC_gene_6420_tx_218 1 - 837873 838843 . 1 971 0 -chrXII 837873 839333 HC_gene_6420_tx_219 3 - 837873 839333 . 1 1461 0 -chrXII 837875 838691 HC_gene_6420_tx_220 1 - 837875 838691 . 1 817 0 -chrXII 837876 838458 HC_gene_6420_tx_221 1 - 837876 838458 . 1 583 0 -chrXII 837876 838691 HC_gene_6420_tx_222 1 - 837876 838691 . 1 816 0 -chrXII 837877 839333 HC_gene_6420_tx_223 1 - 837877 839333 . 1 1457 0 -chrXII 837878 839333 HC_gene_6420_tx_224 1 - 837878 839333 . 1 1456 0 -chrXII 837879 839333 HC_gene_6420_tx_225 4 - 837879 839333 . 1 1455 0 -chrXII 837882 838843 HC_gene_6420_tx_226 1 - 837882 838843 . 1 962 0 -chrXII 837883 838209 HC_gene_6420_tx_315 1 - 837883 838209 . 1 327 0 -chrXII 837883 838691 HC_gene_6420_tx_227 1 - 837883 838691 . 1 809 0 -chrXII 837883 839333 HC_gene_6420_tx_228 1 - 837883 839333 . 1 1451 0 -chrXII 837884 839333 HC_gene_6420_tx_229 3 - 837884 839333 . 1 1450 0 -chrXII 837887 838209 HC_gene_6420_tx_316 1 - 837887 838209 . 1 323 0 -chrXII 837887 838691 HC_gene_6420_tx_230 1 - 837887 838691 . 1 805 0 -chrXII 837887 839091 HC_gene_6420_tx_231 1 - 837887 839091 . 1 1205 0 -chrXII 837887 839333 HC_gene_6420_tx_232 2 - 837887 839333 . 1 1447 0 -chrXII 837889 838209 HC_gene_6420_tx_317 1 - 837889 838209 . 1 321 0 -chrXII 837889 838691 HC_gene_6420_tx_233 3 - 837889 838691 . 1 803 0 -chrXII 837890 838209 HC_gene_6420_tx_318 1 - 837890 838209 . 1 320 0 -chrXII 837890 838458 HC_gene_6420_tx_234 2 - 837890 838458 . 1 569 0 -chrXII 837890 838843 HC_gene_6420_tx_235 1 - 837890 838843 . 1 954 0 -chrXII 837890 839333 HC_gene_6420_tx_236 1 - 837890 839333 . 2 404,806 0,638 -chrXII 837890 839333 HC_gene_6420_tx_237 2 - 837890 839333 . 1 1444 0 -chrXII 837891 838458 HC_gene_6420_tx_238 1 - 837891 838458 . 1 568 0 -chrXII 837891 838691 HC_gene_6420_tx_239 3 - 837891 838691 . 1 801 0 -chrXII 837891 838843 HC_gene_6420_tx_240 1 - 837891 838843 . 1 953 0 -chrXII 837891 839091 HC_gene_6420_tx_241 1 - 837891 839091 . 1 1201 0 -chrXII 837892 838209 HC_gene_6420_tx_319 2 - 837892 838209 . 1 318 0 -chrXII 837892 838458 HC_gene_6420_tx_242 4 - 837892 838458 . 1 567 0 -chrXII 837892 838691 HC_gene_6420_tx_243 3 - 837892 838691 . 1 800 0 -chrXII 837892 838843 HC_gene_6420_tx_244 2 - 837892 838843 . 1 952 0 -chrXII 837892 838956 HC_gene_6420_tx_245 1 - 837892 838956 . 1 1065 0 -chrXII 837892 839333 HC_gene_6420_tx_246 13 - 837892 839333 . 1 1442 0 -chrXII 837893 838209 HC_gene_6420_tx_320 1 - 837893 838209 . 1 317 0 -chrXII 837893 838843 HC_gene_6420_tx_247 1 - 837893 838843 . 1 951 0 -chrXII 837893 839333 HC_gene_6420_tx_248 4 - 837893 839333 . 1 1441 0 -chrXII 837894 839333 HC_gene_6420_tx_249 1 - 837894 839333 . 1 1440 0 -chrXII 837895 838209 HC_gene_6420_tx_321 1 - 837895 838209 . 1 315 0 -chrXII 837895 838458 HC_gene_6420_tx_250 6 - 837895 838458 . 1 564 0 -chrXII 837895 838691 HC_gene_6420_tx_251 7 - 837895 838691 . 1 797 0 -chrXII 837895 838843 HC_gene_6420_tx_252 2 - 837895 838843 . 1 949 0 -chrXII 837895 838956 HC_gene_6420_tx_253 3 - 837895 838956 . 1 1062 0 -chrXII 837895 839091 HC_gene_6420_tx_254 1 - 837895 839091 . 1 1197 0 -chrXII 837895 839333 HC_gene_6420_tx_255 31 - 837895 839333 . 1 1439 0 -chrXII 837896 839333 HC_gene_6420_tx_256 1 - 837896 839333 . 1 1438 0 -chrXII 837897 838209 HC_gene_6420_tx_322 1 - 837897 838209 . 1 313 0 -chrXII 837897 838458 HC_gene_6420_tx_257 4 - 837897 838458 . 1 562 0 -chrXII 837897 838691 HC_gene_6420_tx_258 6 - 837897 838691 . 1 795 0 -chrXII 837897 838843 HC_gene_6420_tx_259 1 - 837897 838843 . 1 947 0 -chrXII 837897 838956 HC_gene_6420_tx_260 1 - 837897 838956 . 1 1060 0 -chrXII 837897 839091 HC_gene_6420_tx_261 4 - 837897 839091 . 1 1195 0 -chrXII 837897 839333 HC_gene_6420_tx_262 22 - 837897 839333 . 1 1437 0 -chrXII 837898 838691 HC_gene_6420_tx_263 1 - 837898 838691 . 1 794 0 -chrXII 837899 838209 HC_gene_6420_tx_323 1 - 837899 838209 . 1 311 0 -chrXII 837899 838458 HC_gene_6420_tx_264 4 - 837899 838458 . 1 560 0 -chrXII 837899 838691 HC_gene_6420_tx_265 2 - 837899 838691 . 1 793 0 -chrXII 837899 838843 HC_gene_6420_tx_266 2 - 837899 838843 . 1 945 0 -chrXII 837899 839333 HC_gene_6420_tx_267 13 - 837899 839333 . 1 1435 0 -chrXII 837900 839333 HC_gene_6420_tx_268 1 - 837900 839333 . 1 1434 0 -chrXII 837901 838691 HC_gene_6420_tx_269 2 - 837901 838691 . 1 791 0 -chrXII 837901 838843 HC_gene_6420_tx_270 1 - 837901 838843 . 1 943 0 -chrXII 837901 839333 HC_gene_6420_tx_271 3 - 837901 839333 . 1 1433 0 -chrXII 837902 838458 HC_gene_6420_tx_272 1 - 837902 838458 . 1 557 0 -chrXII 837902 839333 HC_gene_6420_tx_273 1 - 837902 839333 . 1 1432 0 -chrXII 837903 839333 HC_gene_6420_tx_274 2 - 837903 839333 . 1 1431 0 -chrXII 837905 838843 HC_gene_6420_tx_275 1 - 837905 838843 . 1 939 0 -chrXII 837906 838458 HC_gene_6420_tx_276 1 - 837906 838458 . 1 553 0 -chrXII 837907 838691 HC_gene_6420_tx_277 2 - 837907 838691 . 1 785 0 -chrXII 837907 839091 HC_gene_6420_tx_278 1 - 837907 839091 . 1 1185 0 -chrXII 837907 839333 HC_gene_6420_tx_279 1 - 837907 839333 . 1 1427 0 -chrXII 837909 839333 HC_gene_6420_tx_280 1 - 837909 839333 . 1 1425 0 -chrXII 837910 838458 HC_gene_6420_tx_281 1 - 837910 838458 . 1 549 0 -chrXII 837910 839333 HC_gene_6420_tx_282 1 - 837910 839333 . 1 1424 0 -chrXII 837911 838691 HC_gene_6420_tx_283 1 - 837911 838691 . 1 781 0 -chrXII 837911 839333 HC_gene_6420_tx_284 2 - 837911 839333 . 1 1423 0 -chrXII 837912 838209 HC_gene_6420_tx_324 1 - 837912 838209 . 1 298 0 -chrXII 837913 839091 HC_gene_6420_tx_285 1 - 837913 839091 . 1 1179 0 -chrXII 837913 839333 HC_gene_6420_tx_286 1 - 837913 839333 . 1 1421 0 -chrXII 839915 840147 LC_gene_6008_tx_1 1 + 839915 840147 . 1 233 0 -chrXII 840275 841080 LC_gene_6421_tx_1 1 - 840275 841080 . 1 806 0 -chrXII 840289 841020 HC_gene_6009_tx_1 65 + 840289 841020 . 1 732 0 -chrXII 840289 841123 HC_gene_6009_tx_2 18 + 840289 841123 . 1 835 0 -chrXII 840289 841123 HC_gene_6009_tx_3 1 + 840289 841123 . 2 85,618 0,217 -chrXII 841286 844193 HC_gene_6010_tx_1 10 + 841286 844193 . 1 2908 0 -chrXII 841286 844193 HC_gene_6010_tx_2 1 + 841286 844193 . 2 928,1937 0,971 -chrXII 843133 844193 HC_gene_6010_tx_3 6 + 843133 844193 . 1 1061 0 -chrXII 843383 844193 HC_gene_6010_tx_4 10 + 843383 844193 . 1 811 0 -chrXII 843383 844193 HC_gene_6010_tx_5 1 + 843383 844193 . 2 617,56 0,755 -chrXII 843783 844193 HC_gene_6010_tx_6 17 + 843783 844193 . 1 411 0 -chrXII 844207 845865 HC_gene_6011_tx_1 1 + 844207 845865 . 2 136,793 0,866 -chrXII 844253 845865 HC_gene_6011_tx_2 202 + 844253 845865 . 1 1613 0 -chrXII 844253 845865 HC_gene_6011_tx_3 1 + 844253 845865 . 2 405,849 0,764 -chrXII 844253 845865 HC_gene_6011_tx_4 1 + 844253 845865 . 2 525,938 0,675 -chrXII 844253 845865 HC_gene_6011_tx_5 1 + 844253 845865 . 2 878,659 0,954 -chrXII 844253 845865 HC_gene_6011_tx_6 1 + 844253 845865 . 2 400,1064 0,549 -chrXII 844332 845865 HC_gene_6011_tx_7 9 + 844332 845865 . 1 1534 0 -chrXII 844332 845865 HC_gene_6011_tx_8 1 + 844332 845865 . 2 991,461 0,1073 -chrXII 844417 845865 HC_gene_6011_tx_9 13 + 844417 845865 . 1 1449 0 -chrXII 844581 845865 HC_gene_6011_tx_10 14 + 844581 845865 . 1 1285 0 -chrXII 844864 845865 HC_gene_6011_tx_11 90 + 844864 845865 . 1 1002 0 -chrXII 845023 845865 HC_gene_6011_tx_12 43 + 845023 845865 . 1 843 0 -chrXII 845070 845595 LC_gene_6422_tx_1 1 - 845070 845595 . 1 526 0 -chrXII 845201 845865 HC_gene_6011_tx_13 144 + 845201 845865 . 1 665 0 -chrXII 845201 845865 HC_gene_6011_tx_14 1 + 845201 845865 . 2 75,532 0,133 -chrXII 845353 845865 HC_gene_6011_tx_15 63 + 845353 845865 . 1 513 0 -chrXII 845530 845865 HC_gene_6011_tx_16 46 + 845530 845865 . 1 336 0 -chrXII 846028 847562 HC_gene_6012_tx_1 9 + 846028 847562 . 1 1535 0 -chrXII 846174 847562 HC_gene_6012_tx_2 1 + 846174 847562 . 1 1389 0 -chrXII 846584 847562 HC_gene_6012_tx_3 6 + 846584 847562 . 1 979 0 -chrXII 846736 849146 HC_gene_6423_tx_1 2 - 846736 849146 . 1 2411 0 -chrXII 847005 849146 HC_gene_6423_tx_2 8 - 847005 849146 . 1 2142 0 -chrXII 847005 849146 HC_gene_6423_tx_3 1 - 847005 849146 . 2 407,1607 0,535 -chrXII 849072 849401 MC_gene_6013_tx_1 1 + 849072 849401 . 1 330 0 -chrXII 849222 849703 HC_gene_6424_tx_1 153 - 849222 849703 . 1 482 0 -chrXII 849835 852133 HC_gene_6014_tx_1 5 + 849835 852133 . 1 2299 0 -chrXII 849835 852224 HC_gene_6014_tx_2 1 + 849835 852224 . 1 2390 0 -chrXII 851480 852133 HC_gene_6014_tx_3 2 + 851480 852133 . 1 654 0 -chrXII 851880 852133 HC_gene_6014_tx_4 1 + 851880 852133 . 1 254 0 -chrXII 852058 852762 HC_gene_6425_tx_1 5 - 852058 852762 . 1 705 0 -chrXII 852058 853231 HC_gene_6425_tx_2 53 - 852058 853231 . 1 1174 0 -chrXII 852058 853231 HC_gene_6425_tx_3 1 - 852058 853231 . 2 750,170 0,1004 -chrXII 853432 853830 HC_gene_6015_tx_1 1 + 853432 853830 . 1 399 0 -chrXII 853432 853834 HC_gene_6015_tx_2 1 + 853432 853834 . 1 403 0 -chrXII 853432 853839 HC_gene_6015_tx_3 2 + 853432 853839 . 1 408 0 -chrXII 853432 853845 HC_gene_6015_tx_4 1 + 853432 853845 . 1 414 0 -chrXII 853432 853846 HC_gene_6015_tx_5 2 + 853432 853846 . 1 415 0 -chrXII 853432 853847 HC_gene_6015_tx_6 2 + 853432 853847 . 1 416 0 -chrXII 853432 853848 HC_gene_6015_tx_7 1 + 853432 853848 . 1 417 0 -chrXII 853432 853857 HC_gene_6015_tx_8 1 + 853432 853857 . 1 426 0 -chrXII 853432 853858 HC_gene_6015_tx_9 1 + 853432 853858 . 1 427 0 -chrXII 853432 853860 HC_gene_6015_tx_10 2 + 853432 853860 . 1 429 0 -chrXII 853432 853862 HC_gene_6015_tx_11 1 + 853432 853862 . 1 431 0 -chrXII 853432 853866 HC_gene_6015_tx_12 12 + 853432 853866 . 1 435 0 -chrXII 853432 853866 HC_gene_6015_tx_13 1 + 853432 853866 . 2 111,239 0,196 -chrXII 853432 853867 HC_gene_6015_tx_14 13 + 853432 853867 . 1 436 0 -chrXII 853432 853870 HC_gene_6015_tx_15 1 + 853432 853870 . 1 439 0 -chrXII 853432 853875 HC_gene_6015_tx_16 2 + 853432 853875 . 1 444 0 -chrXII 853432 853878 HC_gene_6015_tx_17 1 + 853432 853878 . 1 447 0 -chrXII 853432 853880 HC_gene_6015_tx_18 5 + 853432 853880 . 1 449 0 -chrXII 853432 853881 HC_gene_6015_tx_19 9 + 853432 853881 . 1 450 0 -chrXII 853432 853882 HC_gene_6015_tx_20 4 + 853432 853882 . 1 451 0 -chrXII 853432 853884 HC_gene_6015_tx_21 1 + 853432 853884 . 1 453 0 -chrXII 853432 854077 HC_gene_6015_tx_22 45 + 853432 854077 . 1 646 0 -chrXII 853432 854448 HC_gene_6015_tx_25 2 + 853432 854448 . 1 1017 0 -chrXII 853444 854077 HC_gene_6015_tx_23 1 + 853444 854077 . 1 634 0 -chrXII 853450 854077 HC_gene_6015_tx_24 2 + 853450 854077 . 1 628 0 -chrXII 853706 854330 HC_gene_6426_tx_1 3 - 853706 854330 . 1 625 0 -chrXII 853965 854330 HC_gene_6426_tx_2 4 - 853965 854330 . 1 366 0 -chrXII 854024 854567 HC_gene_6015_tx_26 1 + 854024 854567 . 1 544 0 -chrXII 854026 854077 HC_gene_6015_tx_27 1 + 854026 854077 . 1 52 0 -chrXII 854026 854448 HC_gene_6015_tx_28 37 + 854026 854448 . 1 423 0 -chrXII 854026 854803 HC_gene_6015_tx_29 3 + 854026 854803 . 1 778 0 -chrXII 854377 854973 MC_gene_6427_tx_1 1 - 854377 854973 . 1 597 0 -chrXII 854547 854803 HC_gene_6015_tx_30 1 + 854547 854803 . 1 257 0 -chrXII 854547 855428 HC_gene_6015_tx_31 2 + 854547 855428 . 1 882 0 -chrXII 854632 855457 MC_gene_6428_tx_1 1 - 854632 855457 . 1 826 0 -chrXII 854741 855297 MC_gene_6428_tx_2 1 - 854741 855297 . 1 557 0 -chrXII 855352 855593 MC_gene_6429_tx_1 1 - 855352 855593 . 1 242 0 -chrXII 855836 857381 HC_gene_6016_tx_1 124 + 855836 857381 . 3 42,140,324 0,599,1222 -chrXII 855836 857381 HC_gene_6016_tx_2 36 + 855836 857381 . 2 739,324 0,1222 -chrXII 855836 857381 HC_gene_6016_tx_3 2 + 855836 857381 . 3 42,131,324 0,592,1222 -chrXII 855836 857381 HC_gene_6016_tx_4 24 + 855836 857381 . 1 1546 0 -chrXII 855836 857381 HC_gene_6016_tx_5 1 + 855836 857381 . 3 89,140,324 0,599,1222 -chrXII 855836 857381 HC_gene_6016_tx_6 19 + 855836 857381 . 3 42,147,324 0,592,1222 -chrXII 855836 857381 HC_gene_6016_tx_7 1 + 855836 857381 . 3 42,173,324 0,599,1222 -chrXII 855836 857381 HC_gene_6016_tx_8 1 + 855836 857381 . 3 42,144,324 0,599,1222 -chrXII 855836 857381 HC_gene_6016_tx_9 2 + 855836 857381 . 3 42,124,324 0,599,1222 -chrXII 855836 857381 HC_gene_6016_tx_10 1 + 855836 857381 . 3 46,111,324 0,628,1222 -chrXII 855836 857381 HC_gene_6016_tx_11 1 + 855836 857381 . 3 46,147,324 0,592,1222 -chrXII 855836 857381 HC_gene_6016_tx_12 1 + 855836 857381 . 2 772,287 0,1259 -chrXII 855836 857381 HC_gene_6016_tx_13 1 + 855836 857381 . 2 743,324 0,1222 -chrXII 855836 857520 HC_gene_6016_tx_14 2 + 855836 857520 . 3 42,140,463 0,599,1222 -chrXII 855836 857520 HC_gene_6016_tx_15 2 + 855836 857520 . 2 739,463 0,1222 -chrXII 856421 857381 HC_gene_6016_tx_16 516 + 856421 857381 . 2 154,324 0,637 -chrXII 856421 857381 HC_gene_6016_tx_17 9 + 856421 857381 . 1 961 0 -chrXII 856421 857381 HC_gene_6016_tx_18 23 + 856421 857381 . 2 165,301 0,660 -chrXII 856421 857381 HC_gene_6016_tx_19 7 + 856421 857381 . 2 165,289 0,672 -chrXII 856421 857381 HC_gene_6016_tx_20 8 + 856421 857381 . 2 138,324 0,637 -chrXII 856421 857381 HC_gene_6016_tx_21 1 + 856421 857381 . 2 154,306 0,655 -chrXII 856421 857381 HC_gene_6016_tx_22 1 + 856421 857381 . 2 154,310 0,651 -chrXII 856421 857381 HC_gene_6016_tx_23 1 + 856421 857381 . 2 154,287 0,674 -chrXII 856421 857381 HC_gene_6016_tx_24 1 + 856421 857381 . 2 147,319 0,642 -chrXII 856421 857381 HC_gene_6016_tx_25 1 + 856421 857381 . 2 143,324 0,637 -chrXII 856421 857381 HC_gene_6016_tx_26 1 + 856421 857381 . 2 144,324 0,637 -chrXII 856421 857381 HC_gene_6016_tx_27 1 + 856421 857381 . 2 148,319 0,642 -chrXII 856421 857381 HC_gene_6016_tx_28 4 + 856421 857381 . 2 158,324 0,637 -chrXII 856421 857381 HC_gene_6016_tx_29 1 + 856421 857381 . 2 134,319 0,642 -chrXII 856421 857381 HC_gene_6016_tx_30 1 + 856421 857381 . 2 145,319 0,642 -chrXII 856421 857381 HC_gene_6016_tx_31 1 + 856421 857381 . 2 152,301 0,660 -chrXII 856421 857381 HC_gene_6016_tx_32 1 + 856421 857381 . 2 132,324 0,637 -chrXII 856421 857381 HC_gene_6016_tx_33 1 + 856421 857381 . 2 165,319 0,642 -chrXII 856421 857520 HC_gene_6016_tx_34 6 + 856421 857520 . 2 154,463 0,637 -chrXII 856711 857016 HC_gene_6016_tx_35 1 + 856711 857016 . 1 306 0 -chrXII 856711 857023 HC_gene_6016_tx_36 1 + 856711 857023 . 1 313 0 -chrXII 856711 857027 HC_gene_6016_tx_37 1 + 856711 857027 . 1 317 0 -chrXII 856711 857028 HC_gene_6016_tx_38 2 + 856711 857028 . 1 318 0 -chrXII 856711 857030 HC_gene_6016_tx_39 1 + 856711 857030 . 1 320 0 -chrXII 856711 857034 HC_gene_6016_tx_40 1 + 856711 857034 . 1 324 0 -chrXII 856711 857037 HC_gene_6016_tx_41 1 + 856711 857037 . 1 327 0 -chrXII 856711 857038 HC_gene_6016_tx_42 1 + 856711 857038 . 1 328 0 -chrXII 856711 857041 HC_gene_6016_tx_43 1 + 856711 857041 . 1 331 0 -chrXII 856711 857045 HC_gene_6016_tx_44 1 + 856711 857045 . 1 335 0 -chrXII 856711 857053 HC_gene_6016_tx_45 1 + 856711 857053 . 1 343 0 -chrXII 856711 857054 HC_gene_6016_tx_46 2 + 856711 857054 . 1 344 0 -chrXII 856711 857056 HC_gene_6016_tx_47 1 + 856711 857056 . 1 346 0 -chrXII 856711 857057 HC_gene_6016_tx_48 3 + 856711 857057 . 1 347 0 -chrXII 856711 857381 HC_gene_6016_tx_49 62 + 856711 857381 . 1 671 0 -chrXII 856711 857381 HC_gene_6016_tx_50 26 + 856711 857381 . 2 278,324 0,347 -chrXII 856711 857381 HC_gene_6016_tx_51 2 + 856711 857381 . 2 266,324 0,347 -chrXII 856711 857520 HC_gene_6016_tx_52 1 + 856711 857520 . 1 810 0 -chrXII 856839 857037 HC_gene_6016_tx_57 1 + 856839 857037 . 1 199 0 -chrXII 856839 857043 HC_gene_6016_tx_58 1 + 856839 857043 . 1 205 0 -chrXII 856839 857381 HC_gene_6016_tx_53 17 + 856839 857381 . 1 543 0 -chrXII 856839 857381 HC_gene_6016_tx_54 9 + 856839 857381 . 2 150,324 0,219 -chrXII 856839 857381 HC_gene_6016_tx_55 1 + 856839 857381 . 2 150,305 0,238 -chrXII 856839 857520 HC_gene_6016_tx_56 2 + 856839 857520 . 1 682 0 -chrXII 857463 859130 HC_gene_6017_tx_1 2 + 857463 859130 . 1 1668 0 -chrXII 857463 859381 HC_gene_6017_tx_2 9 + 857463 859381 . 1 1919 0 -chrXII 857490 859381 HC_gene_6017_tx_3 1 + 857490 859381 . 1 1892 0 -chrXII 858208 859381 HC_gene_6017_tx_4 3 + 858208 859381 . 1 1174 0 -chrXII 859312 861651 HC_gene_6018_tx_1 1 + 859312 861651 . 1 2340 0 -chrXII 859312 861651 HC_gene_6018_tx_2 1 + 859312 861651 . 2 673,1622 0,718 -chrXII 859528 861651 HC_gene_6018_tx_3 19 + 859528 861651 . 1 2124 0 -chrXII 861527 861954 HC_gene_6430_tx_1 30 - 861527 861954 . 1 428 0 -chrXII 861527 862295 HC_gene_6430_tx_2 296 - 861527 862295 . 1 769 0 -chrXII 862518 863596 MC_gene_6019_tx_1 1 + 862518 863596 . 1 1079 0 -chrXII 864931 866959 HC_gene_6020_tx_1 1 + 864931 866959 . 1 2029 0 -chrXII 865304 866797 LC_gene_6431_tx_1 1 - 865304 866797 . 1 1494 0 -chrXII 865402 866959 HC_gene_6020_tx_2 8 + 865402 866959 . 1 1558 0 -chrXII 866842 867526 MC_gene_6432_tx_1 1 - 866842 867526 . 1 685 0 -chrXII 867181 868657 HC_gene_6021_tx_1 1 + 867181 868657 . 2 1011,420 0,1057 -chrXII 867210 868523 HC_gene_6021_tx_2 273 + 867210 868523 . 1 1314 0 -chrXII 867210 868523 HC_gene_6021_tx_3 1 + 867210 868523 . 2 208,975 0,339 -chrXII 867210 868523 HC_gene_6021_tx_4 1 + 867210 868523 . 2 129,887 0,427 -chrXII 867210 868523 HC_gene_6021_tx_5 1 + 867210 868523 . 2 100,671 0,643 -chrXII 867210 868523 HC_gene_6021_tx_6 1 + 867210 868523 . 2 178,975 0,339 -chrXII 867210 868657 HC_gene_6021_tx_7 200 + 867210 868657 . 1 1448 0 -chrXII 867210 868657 HC_gene_6021_tx_8 1 + 867210 868657 . 2 780,629 0,819 -chrXII 867210 868657 HC_gene_6021_tx_9 1 + 867210 868657 . 2 1126,242 0,1206 -chrXII 867210 868657 HC_gene_6021_tx_10 1 + 867210 868657 . 4 655,181,79,187 0,810,1136,1261 -chrXII 867210 868716 HC_gene_6021_tx_11 2 + 867210 868716 . 1 1507 0 -chrXII 867622 868523 HC_gene_6021_tx_12 29 + 867622 868523 . 1 902 0 -chrXII 867622 868523 HC_gene_6021_tx_13 1 + 867622 868523 . 2 517,292 0,610 -chrXII 867622 868523 HC_gene_6021_tx_14 1 + 867622 868523 . 2 156,699 0,203 -chrXII 867622 868657 HC_gene_6021_tx_15 17 + 867622 868657 . 1 1036 0 -chrXII 868179 868523 HC_gene_6021_tx_16 26 + 868179 868523 . 1 345 0 -chrXII 868179 868657 HC_gene_6021_tx_17 25 + 868179 868657 . 1 479 0 -chrXII 868575 869443 HC_gene_6433_tx_1 6 - 868575 869443 . 1 869 0 -chrXII 868575 871384 HC_gene_6433_tx_2 13 - 868575 871384 . 1 2810 0 -chrXII 868575 871384 HC_gene_6433_tx_3 1 - 868575 871384 . 2 2027,522 0,2288 -chrXII 871659 872820 HC_gene_6022_tx_1 122 + 871659 872820 . 1 1162 0 -chrXII 872075 872820 HC_gene_6022_tx_2 24 + 872075 872820 . 1 746 0 -chrXII 872226 872820 HC_gene_6022_tx_3 24 + 872226 872820 . 1 595 0 -chrXII 872650 873589 HC_gene_6434_tx_1 1 - 872650 873589 . 1 940 0 -chrXII 872741 873589 HC_gene_6434_tx_2 35 - 872741 873589 . 1 849 0 -chrXII 872741 873589 HC_gene_6434_tx_3 1 - 872741 873589 . 2 541,128 0,721 -chrXII 873607 875096 MC_gene_6435_tx_1 1 - 873607 875096 . 1 1490 0 -chrXII 873626 874834 MC_gene_6435_tx_2 1 - 873626 874834 . 1 1209 0 -chrXII 873735 874978 HC_gene_6023_tx_1 3 + 873735 874978 . 1 1244 0 -chrXII 875534 876158 HC_gene_6436_tx_1 56 - 875534 876158 . 1 625 0 -chrXII 875534 876352 HC_gene_6436_tx_2 27 - 875534 876352 . 1 819 0 -chrXII 875534 876658 HC_gene_6436_tx_4 28 - 875534 876658 . 1 1125 0 -chrXII 875534 876658 HC_gene_6436_tx_5 1 - 875534 876658 . 2 350,230 0,895 -chrXII 875534 877384 HC_gene_6436_tx_7 193 - 875534 877384 . 1 1851 0 -chrXII 875534 877384 HC_gene_6436_tx_8 1 - 875534 877384 . 2 691,599 0,1252 -chrXII 875534 877384 HC_gene_6436_tx_9 1 - 875534 877384 . 2 608,1176 0,675 -chrXII 875534 877384 HC_gene_6436_tx_10 1 - 875534 877384 . 2 687,848 0,1003 -chrXII 875534 877384 HC_gene_6436_tx_11 1 - 875534 877384 . 3 971,155,429 0,1107,1422 -chrXII 875687 876158 HC_gene_6436_tx_13 1 - 875687 876158 . 1 472 0 -chrXII 875687 876352 HC_gene_6436_tx_3 2 - 875687 876352 . 1 666 0 -chrXII 875687 876658 HC_gene_6436_tx_6 1 - 875687 876658 . 1 972 0 -chrXII 875687 877384 HC_gene_6436_tx_12 7 - 875687 877384 . 1 1698 0 -chrXII 878188 879569 HC_gene_6024_tx_1 58 + 878188 879569 . 1 1382 0 -chrXII 879526 879902 MC_gene_6437_tx_1 1 - 879526 879902 . 1 377 0 -chrXII 879581 880177 MC_gene_6438_tx_1 1 - 879581 880177 . 1 597 0 -chrXII 879693 882001 HC_gene_6025_tx_1 1 + 879693 882001 . 2 2159,54 0,2255 -chrXII 879693 882001 HC_gene_6025_tx_2 3 + 879693 882001 . 1 2309 0 -chrXII 879693 882001 HC_gene_6025_tx_3 1 + 879693 882001 . 2 306,1650 0,659 -chrXII 881904 884166 HC_gene_6439_tx_1 1 - 881904 884166 . 1 2263 0 -chrXII 881904 884831 HC_gene_6439_tx_2 7 - 881904 884831 . 1 2928 0 -chrXII 881904 884831 HC_gene_6439_tx_3 1 - 881904 884831 . 2 1476,1352 0,1576 -chrXII 881904 885022 HC_gene_6439_tx_4 3 - 881904 885022 . 1 3119 0 -chrXII 884985 888683 HC_gene_6026_tx_1 1 + 884985 888683 . 1 3699 0 -chrXII 885205 888683 HC_gene_6026_tx_2 2 + 885205 888683 . 1 3479 0 -chrXII 888326 888683 HC_gene_6026_tx_3 3 + 888326 888683 . 1 358 0 -chrXII 888776 889187 HC_gene_6440_tx_1 5 - 888776 889187 . 1 412 0 -chrXII 888776 889243 HC_gene_6440_tx_2 23 - 888776 889243 . 1 468 0 -chrXII 888776 889360 HC_gene_6440_tx_3 9 - 888776 889360 . 1 585 0 -chrXII 888776 889360 HC_gene_6440_tx_4 1 - 888776 889360 . 2 387,133 0,452 -chrXII 888776 889707 HC_gene_6440_tx_5 7 - 888776 889707 . 1 932 0 -chrXII 888776 892886 HC_gene_6440_tx_6 10 - 888776 892886 . 1 4111 0 -chrXII 888776 892886 HC_gene_6440_tx_7 1 - 888776 892886 . 2 1009,2572 0,1539 -chrXII 888776 893421 HC_gene_6440_tx_8 2 - 888776 893421 . 1 4646 0 -chrXII 893605 896447 HC_gene_6027_tx_1 10 + 893605 896447 . 1 2843 0 -chrXII 896278 896626 HC_gene_6441_tx_1 11 - 896278 896626 . 1 349 0 -chrXII 896278 896726 HC_gene_6441_tx_2 11 - 896278 896726 . 1 449 0 -chrXII 896278 896860 HC_gene_6441_tx_3 20 - 896278 896860 . 1 583 0 -chrXII 896278 897535 HC_gene_6441_tx_4 5 - 896278 897535 . 1 1258 0 -chrXII 896278 897619 HC_gene_6441_tx_5 4 - 896278 897619 . 1 1342 0 -chrXII 896278 897762 HC_gene_6441_tx_6 84 - 896278 897762 . 1 1485 0 -chrXII 896278 897762 HC_gene_6441_tx_7 1 - 896278 897762 . 2 361,949 0,536 -chrXII 896278 897762 HC_gene_6441_tx_8 1 - 896278 897762 . 2 1108,306 0,1179 -chrXII 896278 897762 HC_gene_6441_tx_9 1 - 896278 897762 . 2 775,603 0,882 -chrXII 896278 898375 HC_gene_6441_tx_10 2 - 896278 898375 . 1 2098 0 -chrXII 898005 898896 HC_gene_6028_tx_1 28 + 898005 898896 . 2 153,251 0,641 -chrXII 898005 898896 HC_gene_6028_tx_2 3 + 898005 898896 . 1 892 0 -chrXII 898005 898896 HC_gene_6028_tx_3 1 + 898005 898896 . 2 143,251 0,641 -chrXII 898005 898896 HC_gene_6028_tx_4 1 + 898005 898896 . 2 167,237 0,655 -chrXII 898120 898896 HC_gene_6028_tx_5 230 + 898120 898896 . 2 38,251 0,526 -chrXII 898120 898896 HC_gene_6028_tx_6 65 + 898120 898896 . 1 777 0 -chrXII 898120 898896 HC_gene_6028_tx_7 7 + 898120 898896 . 2 52,216 0,561 -chrXII 898120 898896 HC_gene_6028_tx_8 1 + 898120 898896 . 2 42,236 0,541 -chrXII 898120 898896 HC_gene_6028_tx_9 3 + 898120 898896 . 2 28,251 0,526 -chrXII 898120 898896 HC_gene_6028_tx_10 1 + 898120 898896 . 2 42,251 0,526 -chrXII 899180 899495 HC_gene_6029_tx_1 83 + 899180 899495 . 1 316 0 -chrXII 899180 899874 HC_gene_6029_tx_2 3 + 899180 899874 . 1 695 0 -chrXII 899356 900009 HC_gene_6442_tx_1 12 - 899356 900009 . 1 654 0 -chrXII 899356 900145 HC_gene_6442_tx_2 12 - 899356 900145 . 1 790 0 -chrXII 899356 902130 HC_gene_6442_tx_3 6 - 899356 902130 . 1 2775 0 -chrXII 899356 902441 HC_gene_6442_tx_4 1 - 899356 902441 . 2 1122,1900 0,1186 -chrXII 899356 902441 HC_gene_6442_tx_5 1 - 899356 902441 . 1 3086 0 -chrXII 899356 902614 HC_gene_6442_tx_6 15 - 899356 902614 . 1 3259 0 -chrXII 899356 902614 HC_gene_6442_tx_7 1 - 899356 902614 . 2 1605,1323 0,1936 -chrXII 899356 902614 HC_gene_6442_tx_8 1 - 899356 902614 . 2 1977,1236 0,2023 -chrXII 899356 903386 HC_gene_6442_tx_9 1 - 899356 903386 . 1 4031 0 -chrXII 899575 900145 HC_gene_6442_tx_12 1 - 899575 900145 . 1 571 0 -chrXII 899575 902614 HC_gene_6442_tx_10 3 - 899575 902614 . 1 3040 0 -chrXII 899575 903386 HC_gene_6442_tx_11 1 - 899575 903386 . 1 3812 0 -chrXII 902894 903485 HC_gene_6030_tx_1 30 + 902894 903485 . 1 592 0 -chrXII 903125 903485 HC_gene_6030_tx_2 83 + 903125 903485 . 1 361 0 -chrXII 903669 904579 HC_gene_6031_tx_1 502 + 903669 904579 . 1 911 0 -chrXII 903669 904579 HC_gene_6031_tx_2 1 + 903669 904579 . 2 241,580 0,331 -chrXII 903669 904579 HC_gene_6031_tx_3 1 + 903669 904579 . 2 341,476 0,435 -chrXII 903669 904579 HC_gene_6031_tx_4 1 + 903669 904579 . 2 65,666 0,245 -chrXII 903669 904579 HC_gene_6031_tx_5 1 + 903669 904579 . 2 69,666 0,245 -chrXII 903669 904579 HC_gene_6031_tx_6 1 + 903669 904579 . 2 252,563 0,348 -chrXII 903669 904579 HC_gene_6031_tx_7 1 + 903669 904579 . 2 623,233 0,678 -chrXII 903669 904579 HC_gene_6031_tx_8 1 + 903669 904579 . 2 560,298 0,613 -chrXII 903669 904579 HC_gene_6031_tx_9 1 + 903669 904579 . 2 341,509 0,402 -chrXII 903669 904579 HC_gene_6031_tx_10 1 + 903669 904579 . 2 341,487 0,424 -chrXII 903669 904579 HC_gene_6031_tx_11 1 + 903669 904579 . 2 497,377 0,534 -chrXII 903669 904579 HC_gene_6031_tx_12 1 + 903669 904579 . 2 201,649 0,262 -chrXII 903669 904579 HC_gene_6031_tx_13 1 + 903669 904579 . 2 349,506 0,405 -chrXII 903669 904579 HC_gene_6031_tx_14 1 + 903669 904579 . 2 380,492 0,419 -chrXII 903669 904666 HC_gene_6031_tx_15 725 + 903669 904666 . 1 998 0 -chrXII 903669 904666 HC_gene_6031_tx_16 1 + 903669 904666 . 2 275,635 0,363 -chrXII 903669 904666 HC_gene_6031_tx_17 1 + 903669 904666 . 2 241,494 0,504 -chrXII 903669 904666 HC_gene_6031_tx_18 1 + 903669 904666 . 2 548,395 0,603 -chrXII 903669 904666 HC_gene_6031_tx_19 1 + 903669 904666 . 2 52,662 0,336 -chrXII 903669 904666 HC_gene_6031_tx_20 1 + 903669 904666 . 2 383,494 0,504 -chrXII 903669 904666 HC_gene_6031_tx_21 1 + 903669 904666 . 2 73,578 0,420 -chrXII 903669 904666 HC_gene_6031_tx_22 1 + 903669 904666 . 2 69,736 0,262 -chrXII 903669 904666 HC_gene_6031_tx_23 1 + 903669 904666 . 2 299,578 0,420 -chrXII 903669 904666 HC_gene_6031_tx_24 1 + 903669 904666 . 2 321,611 0,387 -chrXII 903669 904666 HC_gene_6031_tx_25 1 + 903669 904666 . 2 359,464 0,534 -chrXII 903669 904666 HC_gene_6031_tx_26 2 + 903669 904666 . 2 383,578 0,420 -chrXII 903669 904666 HC_gene_6031_tx_27 1 + 903669 904666 . 2 334,578 0,420 -chrXII 903669 904666 HC_gene_6031_tx_28 1 + 903669 904666 . 2 144,736 0,262 -chrXII 903669 904666 HC_gene_6031_tx_29 1 + 903669 904666 . 2 341,563 0,435 -chrXII 903669 904666 HC_gene_6031_tx_30 1 + 903669 904666 . 2 252,611 0,387 -chrXII 903669 904666 HC_gene_6031_tx_31 1 + 903669 904666 . 2 97,852 0,146 -chrXII 903669 904666 HC_gene_6031_tx_32 1 + 903669 904666 . 2 689,247 0,751 -chrXII 903669 904666 HC_gene_6031_tx_33 1 + 903669 904666 . 2 566,320 0,678 -chrXII 903669 904666 HC_gene_6031_tx_34 2 + 903669 904666 . 2 401,509 0,489 -chrXII 903669 904666 HC_gene_6031_tx_35 1 + 903669 904666 . 2 82,867 0,131 -chrXII 903669 904666 HC_gene_6031_tx_36 1 + 903669 904666 . 2 302,509 0,489 -chrXII 903669 904666 HC_gene_6031_tx_37 1 + 903669 904666 . 2 156,545 0,453 -chrXII 903669 904666 HC_gene_6031_tx_38 1 + 903669 904666 . 2 515,385 0,613 -chrXII 903669 904666 HC_gene_6031_tx_39 1 + 903669 904666 . 2 404,464 0,534 -chrXII 903669 904666 HC_gene_6031_tx_40 1 + 903669 904666 . 2 348,545 0,453 -chrXII 903669 904666 HC_gene_6031_tx_41 1 + 903669 904666 . 2 452,464 0,534 -chrXII 903994 904579 HC_gene_6031_tx_42 1 + 903994 904579 . 2 82,308 0,278 -chrXII 904075 904579 HC_gene_6031_tx_43 207 + 904075 904579 . 1 505 0 -chrXII 904075 904579 HC_gene_6031_tx_44 1 + 904075 904579 . 2 214,183 0,322 -chrXII 904075 904666 HC_gene_6031_tx_45 420 + 904075 904666 . 1 592 0 -chrXII 904075 904666 HC_gene_6031_tx_46 1 + 904075 904666 . 2 276,276 0,316 -chrXII 904576 906463 HC_gene_6443_tx_1 1 - 904576 906463 . 1 1888 0 -chrXII 906619 906902 MC_gene_6444_tx_1 1 - 906619 906902 . 1 284 0 -chrXII 906636 906905 MC_gene_6032_tx_1 1 + 906636 906905 . 1 270 0 -chrXII 906763 907287 MC_gene_6445_tx_1 1 - 906763 907287 . 1 525 0 -chrXII 907035 909492 HC_gene_6033_tx_1 3 + 907035 909492 . 1 2458 0 -chrXII 907035 909492 HC_gene_6033_tx_2 1 + 907035 909492 . 2 151,1074 0,1384 -chrXII 909433 910007 HC_gene_6446_tx_1 381 - 909433 910007 . 1 575 0 -chrXII 910181 912368 HC_gene_6447_tx_1 5 - 910181 912368 . 1 2188 0 -chrXII 910260 911342 HC_gene_6034_tx_1 3 + 910260 911342 . 1 1083 0 -chrXII 912026 912489 MC_gene_6035_tx_1 1 + 912026 912489 . 1 464 0 -chrXII 912405 914913 HC_gene_6448_tx_1 19 - 912405 914913 . 1 2509 0 -chrXII 912405 914913 HC_gene_6448_tx_2 1 - 912405 914913 . 2 35,2423 0,86 -chrXII 912405 914913 HC_gene_6448_tx_3 1 - 912405 914913 . 2 1048,1360 0,1149 -chrXII 912405 914913 HC_gene_6448_tx_4 1 - 912405 914913 . 2 1167,1255 0,1254 -chrXII 914982 916490 LC_gene_6036_tx_1 1 + 914982 916490 . 1 1509 0 -chrXII 915038 915974 HC_gene_6449_tx_1 6 - 915038 915974 . 1 937 0 -chrXII 915038 916927 HC_gene_6449_tx_2 3 - 915038 916927 . 1 1890 0 -chrXII 915038 918853 HC_gene_6449_tx_3 1 - 915038 918853 . 1 3816 0 -chrXII 915038 919060 HC_gene_6449_tx_4 5 - 915038 919060 . 1 4023 0 -chrXII 915038 919060 HC_gene_6449_tx_5 1 - 915038 919060 . 2 1490,2424 0,1599 -chrXII 915038 919060 HC_gene_6449_tx_6 1 - 915038 919060 . 2 2540,1433 0,2590 -chrXII 918043 919062 LC_gene_6037_tx_1 1 + 918043 919062 . 1 1020 0 -chrXII 919197 919587 HC_gene_6450_tx_1 26 - 919197 919587 . 1 391 0 -chrXII 919197 920073 HC_gene_6450_tx_2 9 - 919197 920073 . 1 877 0 -chrXII 919197 920340 HC_gene_6450_tx_3 8 - 919197 920340 . 1 1144 0 -chrXII 919197 920752 HC_gene_6450_tx_4 4 - 919197 920752 . 1 1556 0 -chrXII 919197 921357 HC_gene_6450_tx_5 2 - 919197 921357 . 1 2161 0 -chrXII 919197 921462 HC_gene_6450_tx_6 3 - 919197 921462 . 1 2266 0 -chrXII 919197 921643 HC_gene_6450_tx_7 26 - 919197 921643 . 1 2447 0 -chrXII 919197 921643 HC_gene_6450_tx_8 1 - 919197 921643 . 2 1169,1231 0,1216 -chrXII 919285 920050 MC_gene_6038_tx_1 1 + 919285 920050 . 1 766 0 -chrXII 921523 922150 HC_gene_6451_tx_1 2 - 921523 922150 . 1 628 0 -chrXII 921651 922150 HC_gene_6452_tx_1 2 - 921651 922150 . 1 500 0 -chrXII 921651 922178 HC_gene_6452_tx_2 1 - 921651 922178 . 1 528 0 -chrXII 921651 923360 HC_gene_6452_tx_3 2 - 921651 923360 . 1 1710 0 -chrXII 921651 924491 HC_gene_6452_tx_4 1 - 921651 924491 . 2 2332,377 0,2464 -chrXII 922395 923360 HC_gene_6452_tx_5 11 - 922395 923360 . 1 966 0 -chrXII 922395 923885 HC_gene_6452_tx_6 4 - 922395 923885 . 1 1491 0 -chrXII 922395 924491 HC_gene_6452_tx_7 34 - 922395 924491 . 1 2097 0 -chrXII 922395 924491 HC_gene_6452_tx_8 1 - 922395 924491 . 2 1518,362 0,1735 -chrXII 924761 925212 LC_gene_6453_tx_1 1 - 924761 925212 . 1 452 0 -chrXII 924953 925401 HC_gene_6039_tx_1 4 + 924953 925401 . 1 449 0 -chrXII 924953 925493 HC_gene_6039_tx_2 7 + 924953 925493 . 1 541 0 -chrXII 924953 925692 HC_gene_6039_tx_3 3 + 924953 925692 . 1 740 0 -chrXII 925143 925493 HC_gene_6039_tx_4 1 + 925143 925493 . 1 351 0 -chrXII 925143 925692 HC_gene_6039_tx_5 2 + 925143 925692 . 1 550 0 -chrXII 925276 925493 HC_gene_6039_tx_6 1 + 925276 925493 . 1 218 0 -chrXII 926103 927922 HC_gene_6040_tx_1 1 + 926103 927922 . 1 1820 0 -chrXII 926103 928081 HC_gene_6040_tx_2 4 + 926103 928081 . 1 1979 0 -chrXII 926673 927922 HC_gene_6040_tx_3 1 + 926673 927922 . 1 1250 0 -chrXII 926673 928081 HC_gene_6040_tx_4 11 + 926673 928081 . 1 1409 0 -chrXII 928148 928586 HC_gene_6454_tx_1 3 - 928148 928586 . 1 439 0 -chrXII 928281 928586 HC_gene_6454_tx_2 45 - 928281 928586 . 1 306 0 -chrXII 928705 929652 HC_gene_6041_tx_1 16 + 928705 929652 . 1 948 0 -chrXII 928705 929725 HC_gene_6041_tx_2 10 + 928705 929725 . 1 1021 0 -chrXII 928816 929549 LC_gene_6455_tx_1 1 - 928816 929549 . 1 734 0 -chrXII 929790 931041 HC_gene_6042_tx_1 51 + 929790 931041 . 1 1252 0 -chrXII 930297 931210 HC_gene_6456_tx_1 3 - 930297 931210 . 1 914 0 -chrXII 930722 931210 HC_gene_6456_tx_2 6 - 930722 931210 . 1 489 0 -chrXII 930722 931782 HC_gene_6456_tx_3 7 - 930722 931782 . 2 628,84 0,977 -chrXII 930876 931210 HC_gene_6456_tx_10 704 - 930876 931210 . 1 335 0 -chrXII 930876 931782 HC_gene_6456_tx_4 32 - 930876 931782 . 1 907 0 -chrXII 930876 931782 HC_gene_6456_tx_5 1193 - 930876 931782 . 2 474,84 0,823 -chrXII 930876 931782 HC_gene_6456_tx_6 34 - 930876 931782 . 2 460,84 0,823 -chrXII 930876 931782 HC_gene_6456_tx_7 9 - 930876 931782 . 2 474,55 0,852 -chrXII 930876 931782 HC_gene_6456_tx_8 6 - 930876 931782 . 2 470,71 0,836 -chrXII 930876 931900 HC_gene_6456_tx_9 7 - 930876 931900 . 2 474,202 0,823 -chrXII 931601 932354 LC_gene_6043_tx_1 1 + 931601 932354 . 1 754 0 -chrXII 932350 933657 LC_gene_6457_tx_1 1 - 932350 933657 . 1 1308 0 -chrXII 932723 933879 HC_gene_6044_tx_1 28 + 932723 933879 . 1 1157 0 -chrXII 932723 933879 HC_gene_6044_tx_2 1 + 932723 933879 . 2 52,1049 0,108 -chrXII 932723 933879 HC_gene_6044_tx_3 1 + 932723 933879 . 2 278,513 0,644 -chrXII 932730 933879 HC_gene_6044_tx_4 1 + 932730 933879 . 1 1150 0 -chrXII 932736 933879 HC_gene_6044_tx_5 2 + 932736 933879 . 1 1144 0 -chrXII 932739 933879 HC_gene_6044_tx_6 1 + 932739 933879 . 1 1141 0 -chrXII 932744 933879 HC_gene_6044_tx_7 1 + 932744 933879 . 1 1136 0 -chrXII 932748 933879 HC_gene_6044_tx_8 1 + 932748 933879 . 1 1132 0 -chrXII 932764 933879 HC_gene_6044_tx_9 1 + 932764 933879 . 2 276,378 0,738 -chrXII 932770 933879 HC_gene_6044_tx_10 1 + 932770 933879 . 1 1110 0 -chrXII 932784 933879 HC_gene_6044_tx_11 1 + 932784 933879 . 1 1096 0 -chrXII 932791 933879 HC_gene_6044_tx_12 2 + 932791 933879 . 1 1089 0 -chrXII 932792 933879 HC_gene_6044_tx_13 1 + 932792 933879 . 1 1088 0 -chrXII 932799 933879 HC_gene_6044_tx_14 1 + 932799 933879 . 1 1081 0 -chrXII 932806 933879 HC_gene_6044_tx_15 1 + 932806 933879 . 1 1074 0 -chrXII 933006 933879 HC_gene_6044_tx_16 1 + 933006 933879 . 1 874 0 -chrXII 933036 933879 HC_gene_6044_tx_17 8 + 933036 933879 . 1 844 0 -chrXII 933804 934228 HC_gene_6458_tx_1 67 - 933804 934228 . 1 425 0 -chrXII 934242 934941 HC_gene_6459_tx_1 1 - 934242 934941 . 1 700 0 -chrXII 934242 935583 HC_gene_6459_tx_8 1 - 934242 935583 . 1 1342 0 -chrXII 934242 937282 HC_gene_6459_tx_14 1 - 934242 937282 . 2 731,992 0,2049 -chrXII 934242 937282 HC_gene_6459_tx_15 1 - 934242 937282 . 1 3041 0 -chrXII 934305 935157 HC_gene_6459_tx_28 1 - 934305 935157 . 1 853 0 -chrXII 934305 937282 HC_gene_6459_tx_16 1 - 934305 937282 . 1 2978 0 -chrXII 934315 934941 HC_gene_6459_tx_2 1 - 934315 934941 . 1 627 0 -chrXII 934316 937282 HC_gene_6459_tx_17 1 - 934316 937282 . 1 2967 0 -chrXII 934318 937282 HC_gene_6459_tx_18 2 - 934318 937282 . 1 2965 0 -chrXII 934322 937282 HC_gene_6459_tx_19 1 - 934322 937282 . 1 2961 0 -chrXII 934325 937282 HC_gene_6459_tx_20 1 - 934325 937282 . 1 2958 0 -chrXII 934326 937282 HC_gene_6459_tx_21 1 - 934326 937282 . 2 51,2824 0,133 -chrXII 934346 937282 HC_gene_6459_tx_22 1 - 934346 937282 . 1 2937 0 -chrXII 934353 935583 HC_gene_6459_tx_9 1 - 934353 935583 . 1 1231 0 -chrXII 934363 934941 HC_gene_6459_tx_3 2 - 934363 934941 . 1 579 0 -chrXII 934363 935583 HC_gene_6459_tx_10 1 - 934363 935583 . 1 1221 0 -chrXII 934364 934941 HC_gene_6459_tx_4 1 - 934364 934941 . 1 578 0 -chrXII 934364 935157 HC_gene_6459_tx_29 2 - 934364 935157 . 1 794 0 -chrXII 934364 937282 HC_gene_6459_tx_23 1 - 934364 937282 . 1 2919 0 -chrXII 934365 934941 HC_gene_6459_tx_5 5 - 934365 934941 . 1 577 0 -chrXII 934365 935583 HC_gene_6459_tx_11 1 - 934365 935583 . 1 1219 0 -chrXII 934365 937282 HC_gene_6459_tx_24 3 - 934365 937282 . 1 2918 0 -chrXII 934366 934941 HC_gene_6459_tx_6 3 - 934366 934941 . 1 576 0 -chrXII 934366 935583 HC_gene_6459_tx_12 1 - 934366 935583 . 1 1218 0 -chrXII 934366 937282 HC_gene_6459_tx_25 2 - 934366 937282 . 1 2917 0 -chrXII 934367 934941 HC_gene_6459_tx_7 4 - 934367 934941 . 1 575 0 -chrXII 934367 935583 HC_gene_6459_tx_13 1 - 934367 935583 . 1 1217 0 -chrXII 934367 937282 HC_gene_6459_tx_26 4 - 934367 937282 . 1 2916 0 -chrXII 934369 937282 HC_gene_6459_tx_27 1 - 934369 937282 . 1 2914 0 -chrXII 934457 935043 LC_gene_6045_tx_1 1 + 934457 935043 . 1 587 0 -chrXII 937491 940221 HC_gene_6046_tx_1 1 + 937491 940221 . 1 2731 0 -chrXII 937491 941085 HC_gene_6046_tx_2 10 + 937491 941085 . 1 3595 0 -chrXII 937491 941085 HC_gene_6046_tx_3 1 + 937491 941085 . 2 1227,2295 0,1300 -chrXII 937911 941085 HC_gene_6046_tx_4 2 + 937911 941085 . 1 3175 0 -chrXII 938731 941085 HC_gene_6046_tx_5 2 + 938731 941085 . 1 2355 0 -chrXII 940256 941085 HC_gene_6046_tx_6 4 + 940256 941085 . 1 830 0 -chrXII 940687 941085 HC_gene_6046_tx_7 4 + 940687 941085 . 1 399 0 -chrXII 941055 942393 LC_gene_6460_tx_1 1 - 941055 942393 . 1 1339 0 -chrXII 945901 947107 MC_gene_6047_tx_1 1 + 945901 947107 . 1 1207 0 -chrXII 946956 948141 MC_gene_6461_tx_1 1 - 946956 948141 . 1 1186 0 -chrXII 946959 947926 MC_gene_6461_tx_2 1 - 946959 947926 . 2 723,104 0,864 -chrXII 947254 948125 MC_gene_6048_tx_1 1 + 947254 948125 . 1 872 0 -chrXII 947506 948145 MC_gene_6049_tx_1 1 + 947506 948145 . 1 640 0 -chrXII 948350 949250 HC_gene_6050_tx_1 54 + 948350 949250 . 1 901 0 -chrXII 948350 949421 HC_gene_6050_tx_2 16 + 948350 949421 . 1 1072 0 -chrXII 948350 949421 HC_gene_6050_tx_3 1 + 948350 949421 . 2 117,904 0,168 -chrXII 948350 950107 HC_gene_6050_tx_4 2 + 948350 950107 . 1 1758 0 -chrXII 948350 950181 HC_gene_6050_tx_5 1 + 948350 950181 . 1 1832 0 -chrXII 948528 949432 HC_gene_6462_tx_1 2 - 948528 949432 . 1 905 0 -chrXII 948528 949948 HC_gene_6462_tx_2 2 - 948528 949948 . 1 1421 0 -chrXII 949069 949432 HC_gene_6462_tx_3 2 - 949069 949432 . 1 364 0 -chrXII 949153 949432 HC_gene_6462_tx_4 4 - 949153 949432 . 1 280 0 -chrXII 949153 949948 HC_gene_6462_tx_5 12 - 949153 949948 . 1 796 0 -chrXII 950995 952743 LC_gene_6463_tx_1 1 - 950995 952743 . 1 1749 0 -chrXII 951108 953246 HC_gene_6051_tx_1 11 + 951108 953246 . 1 2139 0 -chrXII 951108 953351 HC_gene_6051_tx_2 1 + 951108 953351 . 2 796,1385 0,859 -chrXII 951108 953351 HC_gene_6051_tx_3 189 + 951108 953351 . 1 2244 0 -chrXII 951108 953351 HC_gene_6051_tx_4 1 + 951108 953351 . 2 1006,1151 0,1093 -chrXII 951108 953351 HC_gene_6051_tx_5 1 + 951108 953351 . 2 834,1151 0,1093 -chrXII 951108 953351 HC_gene_6051_tx_6 1 + 951108 953351 . 2 970,1151 0,1093 -chrXII 951108 953351 HC_gene_6051_tx_7 1 + 951108 953351 . 2 307,1876 0,368 -chrXII 951108 953351 HC_gene_6051_tx_8 1 + 951108 953351 . 2 2072,103 0,2141 -chrXII 951108 953351 HC_gene_6051_tx_9 1 + 951108 953351 . 2 1074,976 0,1268 -chrXII 951108 953351 HC_gene_6051_tx_10 1 + 951108 953351 . 2 234,1947 0,297 -chrXII 951108 953351 HC_gene_6051_tx_11 1 + 951108 953351 . 2 307,1859 0,385 -chrXII 951233 953246 HC_gene_6051_tx_12 1 + 951233 953246 . 1 2014 0 -chrXII 951233 953351 HC_gene_6051_tx_13 25 + 951233 953351 . 1 2119 0 -chrXII 951233 953351 HC_gene_6051_tx_14 1 + 951233 953351 . 2 1267,764 0,1355 -chrXII 951554 953246 HC_gene_6051_tx_15 5 + 951554 953246 . 1 1693 0 -chrXII 951554 953351 HC_gene_6051_tx_16 31 + 951554 953351 . 1 1798 0 -chrXII 953210 953797 HC_gene_6464_tx_1 16 - 953210 953797 . 1 588 0 -chrXII 953210 953923 HC_gene_6464_tx_2 10 - 953210 953923 . 1 714 0 -chrXII 953210 953989 HC_gene_6464_tx_3 11 - 953210 953989 . 1 780 0 -chrXII 953210 954245 HC_gene_6464_tx_4 101 - 953210 954245 . 1 1036 0 -chrXII 953210 954746 HC_gene_6464_tx_5 1 - 953210 954746 . 2 800,310 0,1227 -chrXII 953496 954746 HC_gene_6464_tx_6 1 - 953496 954746 . 1 1251 0 -chrXII 954922 956797 HC_gene_6052_tx_1 11 + 954922 956797 . 1 1876 0 -chrXII 954922 956797 HC_gene_6052_tx_2 1 + 954922 956797 . 2 1308,507 0,1369 -chrXII 955225 956797 HC_gene_6052_tx_3 1 + 955225 956797 . 1 1573 0 -chrXII 955306 956797 HC_gene_6052_tx_4 3 + 955306 956797 . 1 1492 0 -chrXII 955401 956797 HC_gene_6052_tx_5 1 + 955401 956797 . 2 859,461 0,936 -chrXII 955401 956797 HC_gene_6052_tx_6 1 + 955401 956797 . 1 1397 0 -chrXII 955546 956797 HC_gene_6052_tx_7 4 + 955546 956797 . 1 1252 0 -chrXII 955918 956797 HC_gene_6052_tx_8 3 + 955918 956797 . 1 880 0 -chrXII 956588 958156 HC_gene_6465_tx_1 1 - 956588 958156 . 1 1569 0 -chrXII 956595 958156 HC_gene_6465_tx_2 1 - 956595 958156 . 1 1562 0 -chrXII 956596 958156 HC_gene_6465_tx_3 1 - 956596 958156 . 1 1561 0 -chrXII 956599 958156 HC_gene_6465_tx_4 1 - 956599 958156 . 1 1558 0 -chrXII 956606 958156 HC_gene_6465_tx_5 1 - 956606 958156 . 1 1551 0 -chrXII 956611 958156 HC_gene_6465_tx_6 1 - 956611 958156 . 1 1546 0 -chrXII 956616 958156 HC_gene_6465_tx_7 1 - 956616 958156 . 2 728,755 0,786 -chrXII 956621 958156 HC_gene_6465_tx_8 1 - 956621 958156 . 2 65,1383 0,153 -chrXII 956622 958156 HC_gene_6465_tx_9 1 - 956622 958156 . 1 1535 0 -chrXII 956630 958156 HC_gene_6465_tx_10 2 - 956630 958156 . 1 1527 0 -chrXII 956634 958156 HC_gene_6465_tx_11 2 - 956634 958156 . 1 1523 0 -chrXII 956636 958156 HC_gene_6465_tx_12 1 - 956636 958156 . 1 1521 0 -chrXII 956639 958156 HC_gene_6465_tx_13 1 - 956639 958156 . 1 1518 0 -chrXII 956641 958156 HC_gene_6465_tx_14 1 - 956641 958156 . 1 1516 0 -chrXII 956644 958156 HC_gene_6465_tx_15 1 - 956644 958156 . 1 1513 0 -chrXII 956646 958156 HC_gene_6465_tx_16 2 - 956646 958156 . 1 1511 0 -chrXII 956647 958156 HC_gene_6465_tx_17 1 - 956647 958156 . 1 1510 0 -chrXII 956652 958156 HC_gene_6465_tx_18 1 - 956652 958156 . 1 1505 0 -chrXII 956653 958156 HC_gene_6465_tx_19 1 - 956653 958156 . 1 1504 0 -chrXII 956654 958156 HC_gene_6465_tx_20 1 - 956654 958156 . 1 1503 0 -chrXII 956654 958156 HC_gene_6465_tx_21 1 - 956654 958156 . 2 553,838 0,665 -chrXII 956657 958156 HC_gene_6465_tx_22 1 - 956657 958156 . 1 1500 0 -chrXII 956662 958156 HC_gene_6465_tx_23 1 - 956662 958156 . 1 1495 0 -chrXII 956665 958156 HC_gene_6465_tx_24 8 - 956665 958156 . 1 1492 0 -chrXII 956666 958156 HC_gene_6465_tx_25 3 - 956666 958156 . 1 1491 0 -chrXII 956667 958156 HC_gene_6465_tx_26 1 - 956667 958156 . 1 1490 0 -chrXII 956670 958156 HC_gene_6465_tx_27 1 - 956670 958156 . 1 1487 0 -chrXII 956671 958156 HC_gene_6465_tx_28 1 - 956671 958156 . 1 1486 0 -chrXII 956675 958156 HC_gene_6465_tx_29 1 - 956675 958156 . 1 1482 0 -chrXII 956676 958156 HC_gene_6465_tx_30 1 - 956676 958156 . 1 1481 0 -chrXII 956683 958156 HC_gene_6465_tx_31 3 - 956683 958156 . 1 1474 0 -chrXII 956684 958156 HC_gene_6465_tx_32 1 - 956684 958156 . 1 1473 0 -chrXII 956685 958156 HC_gene_6465_tx_33 1 - 956685 958156 . 1 1472 0 -chrXII 956691 958156 HC_gene_6465_tx_34 2 - 956691 958156 . 1 1466 0 -chrXII 956693 958156 HC_gene_6465_tx_35 1 - 956693 958156 . 1 1464 0 -chrXII 956705 958156 HC_gene_6465_tx_36 2 - 956705 958156 . 1 1452 0 -chrXII 956706 958156 HC_gene_6465_tx_37 3 - 956706 958156 . 1 1451 0 -chrXII 956708 958156 HC_gene_6465_tx_38 3 - 956708 958156 . 1 1449 0 -chrXII 956714 958156 HC_gene_6465_tx_39 2 - 956714 958156 . 1 1443 0 -chrXII 956715 958156 HC_gene_6465_tx_40 1 - 956715 958156 . 1 1442 0 -chrXII 956720 958156 HC_gene_6465_tx_41 1 - 956720 958156 . 1 1437 0 -chrXII 956721 958156 HC_gene_6465_tx_42 1 - 956721 958156 . 1 1436 0 -chrXII 956723 958156 HC_gene_6465_tx_43 1 - 956723 958156 . 1 1434 0 -chrXII 956726 958156 HC_gene_6465_tx_44 1 - 956726 958156 . 1 1431 0 -chrXII 958366 961428 HC_gene_6053_tx_1 2 + 958366 961428 . 1 3063 0 -chrXII 958366 962790 HC_gene_6053_tx_2 4 + 958366 962790 . 1 4425 0 -chrXII 961357 963558 HC_gene_6466_tx_1 1 - 961357 963558 . 1 2202 0 -chrXII 963185 963558 HC_gene_6466_tx_2 7 - 963185 963558 . 1 374 0 -chrXII 963761 965028 HC_gene_6054_tx_1 151 + 963761 965028 . 1 1268 0 -chrXII 963887 965028 HC_gene_6054_tx_2 12 + 963887 965028 . 1 1142 0 -chrXII 964092 965028 HC_gene_6054_tx_3 12 + 964092 965028 . 1 937 0 -chrXII 964199 965028 HC_gene_6054_tx_4 10 + 964199 965028 . 1 830 0 -chrXII 964852 965565 HC_gene_6467_tx_1 466 - 964852 965565 . 1 714 0 -chrXII 965793 966519 HC_gene_6055_tx_1 4 + 965793 966519 . 1 727 0 -chrXII 967638 968332 MC_gene_6056_tx_1 1 + 967638 968332 . 1 695 0 -chrXII 968201 969548 MC_gene_6057_tx_1 1 + 968201 969548 . 1 1348 0 -chrXII 971455 971772 HC_gene_6058_tx_1 6 + 971455 971772 . 1 318 0 -chrXII 971455 971853 HC_gene_6058_tx_2 2 + 971455 971853 . 1 399 0 -chrXII 971693 973187 HC_gene_6468_tx_1 11 - 971693 973187 . 1 1495 0 -chrXII 973364 975658 HC_gene_6059_tx_1 4 + 973364 975658 . 1 2295 0 -chrXII 973489 975658 HC_gene_6059_tx_2 1 + 973489 975658 . 2 1093,960 0,1210 -chrXII 973489 975658 HC_gene_6059_tx_3 1 + 973489 975658 . 1 2170 0 -chrXII 974687 975738 LC_gene_6469_tx_1 1 - 974687 975738 . 1 1052 0 -chrXII 975857 976027 MC_gene_6470_tx_1 1 - 975857 976027 . 1 171 0 -chrXII 976378 980334 LC_gene_6471_tx_1 1 - 976378 980334 . 2 688,3210 0,747 -chrXII 980424 981591 LC_gene_6060_tx_1 1 + 980424 981591 . 1 1168 0 -chrXII 981973 982560 HC_gene_6472_tx_1 3 - 981973 982560 . 1 588 0 -chrXII 982712 986889 HC_gene_6061_tx_1 3 + 982712 986889 . 1 4178 0 -chrXII 987036 988193 HC_gene_6062_tx_1 16 + 987036 988193 . 2 106,981 0,177 -chrXII 987036 988193 HC_gene_6062_tx_2 9 + 987036 988193 . 1 1158 0 -chrXII 987036 988193 HC_gene_6062_tx_3 1 + 987036 988193 . 2 106,844 0,314 -chrXII 987036 988193 HC_gene_6062_tx_4 1 + 987036 988193 . 2 106,960 0,198 -chrXII 988333 990604 HC_gene_6063_tx_1 19 + 988333 990604 . 1 2272 0 -chrXII 988333 990604 HC_gene_6063_tx_2 1 + 988333 990604 . 2 1714,206 0,2066 -chrXII 988333 990604 HC_gene_6063_tx_3 1 + 988333 990604 . 2 955,1065 0,1207 -chrXII 988438 990604 HC_gene_6063_tx_4 2 + 988438 990604 . 1 2167 0 -chrXII 988759 990532 LC_gene_6473_tx_1 1 - 988759 990532 . 1 1774 0 -chrXII 990236 990604 HC_gene_6063_tx_5 10 + 990236 990604 . 1 369 0 -chrXII 990484 990987 MC_gene_6474_tx_1 1 - 990484 990987 . 1 504 0 -chrXII 990734 992777 HC_gene_6064_tx_1 5 + 990734 992777 . 1 2044 0 -chrXII 990734 992777 HC_gene_6064_tx_2 1 + 990734 992777 . 2 1197,702 0,1342 -chrXII 990734 992849 HC_gene_6064_tx_3 59 + 990734 992849 . 1 2116 0 -chrXII 990734 992849 HC_gene_6064_tx_4 1 + 990734 992849 . 2 1152,848 0,1268 -chrXII 990734 992849 HC_gene_6064_tx_5 1 + 990734 992849 . 2 1381,452 0,1664 -chrXII 990734 992849 HC_gene_6064_tx_6 1 + 990734 992849 . 2 1166,881 0,1235 -chrXII 990917 992777 HC_gene_6064_tx_7 4 + 990917 992777 . 1 1861 0 -chrXII 990917 992849 HC_gene_6064_tx_8 13 + 990917 992849 . 1 1933 0 -chrXII 990917 992849 HC_gene_6064_tx_9 1 + 990917 992849 . 2 689,877 0,1056 -chrXII 990917 992849 HC_gene_6064_tx_10 1 + 990917 992849 . 2 1214,669 0,1264 -chrXII 991210 992849 HC_gene_6064_tx_11 5 + 991210 992849 . 1 1640 0 -chrXII 991469 992777 HC_gene_6064_tx_12 2 + 991469 992777 . 1 1309 0 -chrXII 991469 992849 HC_gene_6064_tx_13 5 + 991469 992849 . 1 1381 0 -chrXII 991469 992849 HC_gene_6064_tx_14 1 + 991469 992849 . 2 646,653 0,728 -chrXII 991634 992849 HC_gene_6064_tx_15 4 + 991634 992849 . 1 1216 0 -chrXII 991634 992849 HC_gene_6064_tx_16 1 + 991634 992849 . 2 270,676 0,540 -chrXII 992016 992777 HC_gene_6064_tx_17 3 + 992016 992777 . 1 762 0 -chrXII 992016 992849 HC_gene_6064_tx_18 9 + 992016 992849 . 1 834 0 -chrXII 992085 992849 HC_gene_6064_tx_19 3 + 992085 992849 . 1 765 0 -chrXII 992147 992849 HC_gene_6064_tx_20 17 + 992147 992849 . 1 703 0 -chrXII 992284 992777 HC_gene_6064_tx_21 1 + 992284 992777 . 1 494 0 -chrXII 992284 992849 HC_gene_6064_tx_22 20 + 992284 992849 . 1 566 0 -chrXII 993135 993434 HC_gene_6065_tx_1 4 + 993135 993434 . 1 300 0 -chrXII 998912 1000215 HC_gene_6066_tx_1 6 + 998912 1000215 . 1 1304 0 -chrXII 999134 1000215 HC_gene_6066_tx_2 12 + 999134 1000215 . 1 1082 0 -chrXII 1000132 1001823 HC_gene_6475_tx_1 3 - 1000132 1001823 . 1 1692 0 -chrXII 1001743 1002081 HC_gene_6476_tx_1 6 - 1001743 1002081 . 1 339 0 -chrXII 1001853 1002081 HC_gene_6476_tx_2 5 - 1001853 1002081 . 1 229 0 -chrXII 1002449 1004186 HC_gene_6067_tx_1 267 + 1002449 1004186 . 1 1738 0 -chrXII 1002449 1004186 HC_gene_6067_tx_2 1 + 1002449 1004186 . 2 826,763 0,975 -chrXII 1002449 1004186 HC_gene_6067_tx_3 1 + 1002449 1004186 . 2 1201,447 0,1291 -chrXII 1002449 1004186 HC_gene_6067_tx_4 1 + 1002449 1004186 . 2 1024,596 0,1142 -chrXII 1002449 1004186 HC_gene_6067_tx_5 1 + 1002449 1004186 . 2 883,763 0,975 -chrXII 1002449 1004186 HC_gene_6067_tx_6 1 + 1002449 1004186 . 2 919,732 0,1006 -chrXII 1002449 1004186 HC_gene_6067_tx_7 1 + 1002449 1004186 . 2 1213,447 0,1291 -chrXII 1002449 1004186 HC_gene_6067_tx_8 1 + 1002449 1004186 . 2 1069,627 0,1111 -chrXII 1002449 1004186 HC_gene_6067_tx_9 1 + 1002449 1004186 . 2 919,750 0,988 -chrXII 1002449 1004186 HC_gene_6067_tx_10 1 + 1002449 1004186 . 2 909,698 0,1040 -chrXII 1002449 1004186 HC_gene_6067_tx_11 1 + 1002449 1004186 . 3 361,271,620 0,644,1118 -chrXII 1002449 1004186 HC_gene_6067_tx_12 1 + 1002449 1004186 . 2 523,1094 0,644 -chrXII 1002449 1004186 HC_gene_6067_tx_13 1 + 1002449 1004186 . 2 1063,620 0,1118 -chrXII 1002449 1004186 HC_gene_6067_tx_14 1 + 1002449 1004186 . 2 1048,620 0,1118 -chrXII 1002449 1004365 HC_gene_6067_tx_15 17 + 1002449 1004365 . 1 1917 0 -chrXII 1002449 1004365 HC_gene_6067_tx_16 1 + 1002449 1004365 . 2 1133,649 0,1268 -chrXII 1002663 1004186 HC_gene_6067_tx_17 41 + 1002663 1004186 . 1 1524 0 -chrXII 1002663 1004365 HC_gene_6067_tx_18 1 + 1002663 1004365 . 1 1703 0 -chrXII 1002836 1004186 HC_gene_6067_tx_19 23 + 1002836 1004186 . 1 1351 0 -chrXII 1002836 1004365 HC_gene_6067_tx_20 2 + 1002836 1004365 . 1 1530 0 -chrXII 1003184 1004186 HC_gene_6068_tx_1 33 + 1003184 1004186 . 1 1003 0 -chrXII 1003184 1004365 HC_gene_6068_tx_2 2 + 1003184 1004365 . 1 1182 0 -chrXII 1003184 1004570 HC_gene_6068_tx_3 1 + 1003184 1004570 . 1 1387 0 -chrXII 1004164 1004826 HC_gene_6477_tx_1 12 - 1004164 1004826 . 1 663 0 -chrXII 1004164 1006036 HC_gene_6477_tx_2 6 - 1004164 1006036 . 1 1873 0 -chrXII 1004164 1006123 HC_gene_6477_tx_3 18 - 1004164 1006123 . 1 1960 0 -chrXII 1004164 1006123 HC_gene_6477_tx_4 1 - 1004164 1006123 . 2 464,935 0,1025 -chrXII 1006324 1007146 HC_gene_6069_tx_1 198 + 1006324 1007146 . 1 823 0 -chrXII 1006324 1007146 HC_gene_6069_tx_2 1 + 1006324 1007146 . 2 349,403 0,420 -chrXII 1006324 1007146 HC_gene_6069_tx_3 1 + 1006324 1007146 . 2 103,591 0,232 -chrXII 1006324 1007146 HC_gene_6069_tx_4 1 + 1006324 1007146 . 2 103,618 0,205 -chrXII 1006324 1007146 HC_gene_6069_tx_5 1 + 1006324 1007146 . 2 179,567 0,256 -chrXII 1006324 1007146 HC_gene_6069_tx_6 1 + 1006324 1007146 . 2 119,618 0,205 -chrXII 1006324 1007146 HC_gene_6069_tx_7 1 + 1006324 1007146 . 2 349,420 0,403 -chrXII 1006333 1007146 HC_gene_6069_tx_8 1 + 1006333 1007146 . 2 192,567 0,247 -chrXII 1006510 1007146 HC_gene_6069_tx_9 29 + 1006510 1007146 . 1 637 0 -chrXII 1006510 1007146 HC_gene_6069_tx_10 1 + 1006510 1007146 . 2 145,447 0,190 -chrXII 1006687 1007146 HC_gene_6069_tx_11 30 + 1006687 1007146 . 1 460 0 -chrXII 1006832 1007146 HC_gene_6069_tx_12 14 + 1006832 1007146 . 1 315 0 -chrXII 1007353 1008049 HC_gene_6478_tx_1 8 - 1007353 1008049 . 1 697 0 -chrXII 1007353 1008925 HC_gene_6478_tx_2 1 - 1007353 1008925 . 1 1573 0 -chrXII 1007353 1009959 HC_gene_6478_tx_3 2 - 1007353 1009959 . 1 2607 0 -chrXII 1007353 1011302 HC_gene_6478_tx_4 3 - 1007353 1011302 . 1 3950 0 -chrXII 1007629 1008049 HC_gene_6478_tx_5 1 - 1007629 1008049 . 1 421 0 -chrXII 1010969 1011382 HC_gene_6070_tx_1 3 + 1010969 1011382 . 1 414 0 -chrXII 1011468 1011834 HC_gene_6479_tx_1 14 - 1011468 1011834 . 1 367 0 -chrXII 1011468 1012090 HC_gene_6479_tx_2 71 - 1011468 1012090 . 1 623 0 -chrXII 1011571 1012213 MC_gene_6071_tx_1 1 + 1011571 1012213 . 1 643 0 -chrXII 1012460 1013895 MC_gene_6072_tx_1 1 + 1012460 1013895 . 1 1436 0 -chrXII 1012627 1013868 MC_gene_6072_tx_2 1 + 1012627 1013868 . 1 1242 0 -chrXII 1012639 1013309 LC_gene_6480_tx_1 1 - 1012639 1013309 . 1 671 0 -chrXII 1013135 1013877 MC_gene_6072_tx_3 1 + 1013135 1013877 . 1 743 0 -chrXII 1013287 1013894 MC_gene_6072_tx_4 1 + 1013287 1013894 . 1 608 0 -chrXII 1013750 1014238 HC_gene_6481_tx_1 376 - 1013750 1014238 . 1 489 0 -chrXII 1014457 1015523 HC_gene_6073_tx_1 4 + 1014457 1015523 . 1 1067 0 -chrXII 1014457 1015593 HC_gene_6073_tx_2 33 + 1014457 1015593 . 1 1137 0 -chrXII 1015373 1017767 HC_gene_6482_tx_1 20 - 1015373 1017767 . 1 2395 0 -chrXII 1015373 1017767 HC_gene_6482_tx_2 1 - 1015373 1017767 . 2 699,417 0,1978 -chrXII 1015373 1017767 HC_gene_6482_tx_3 1 - 1015373 1017767 . 2 965,1350 0,1045 -chrXII 1015373 1017767 HC_gene_6482_tx_4 1 - 1015373 1017767 . 2 2084,253 0,2142 -chrXII 1015373 1017767 HC_gene_6482_tx_5 1 - 1015373 1017767 . 2 1039,1262 0,1133 -chrXII 1017870 1018177 LC_gene_6074_tx_1 1 + 1017870 1018177 . 1 308 0 -chrXII 1017873 1018375 HC_gene_6483_tx_1 395 - 1017873 1018375 . 1 503 0 -chrXII 1017873 1018605 HC_gene_6483_tx_2 496 - 1017873 1018605 . 1 733 0 -chrXII 1017873 1018686 HC_gene_6483_tx_3 215 - 1017873 1018686 . 1 814 0 -chrXII 1017873 1018933 HC_gene_6483_tx_4 2304 - 1017873 1018933 . 1 1061 0 -chrXII 1019212 1022280 HC_gene_6484_tx_1 1 - 1019212 1022280 . 3 1426,260,663 0,1644,2406 -chrXII 1019212 1022280 HC_gene_6484_tx_2 3 - 1019212 1022280 . 1 3069 0 -chrXII 1019212 1022280 HC_gene_6484_tx_3 1 - 1019212 1022280 . 2 773,2223 0,846 -chrXII 1019212 1022280 HC_gene_6484_tx_4 1 - 1019212 1022280 . 2 1128,1732 0,1337 -chrXII 1019317 1020273 LC_gene_6075_tx_1 1 + 1019317 1020273 . 1 957 0 -chrXII 1022394 1023998 LC_gene_6485_tx_1 1 - 1022394 1023998 . 1 1605 0 -chrXII 1022491 1024074 HC_gene_6076_tx_1 19 + 1022491 1024074 . 1 1584 0 -chrXII 1022616 1024074 HC_gene_6076_tx_2 7 + 1022616 1024074 . 1 1459 0 -chrXII 1025069 1026680 HC_gene_6486_tx_1 1 - 1025069 1026680 . 1 1612 0 -chrXII 1025177 1025603 HC_gene_6077_tx_1 1 + 1025177 1025603 . 1 427 0 -chrXII 1025320 1026680 HC_gene_6486_tx_2 1 - 1025320 1026680 . 1 1361 0 -chrXII 1025381 1026680 HC_gene_6486_tx_3 19 - 1025381 1026680 . 1 1300 0 -chrXII 1025381 1026680 HC_gene_6486_tx_4 1 - 1025381 1026680 . 2 1033,203 0,1097 -chrXII 1026247 1026680 HC_gene_6486_tx_5 3 - 1026247 1026680 . 1 434 0 -chrXII 1026247 1027065 HC_gene_6486_tx_6 1 - 1026247 1027065 . 1 819 0 -chrXII 1026382 1026680 HC_gene_6486_tx_7 1 - 1026382 1026680 . 1 299 0 -chrXII 1026657 1027065 HC_gene_6486_tx_8 93 - 1026657 1027065 . 1 409 0 -chrXII 1026657 1027256 HC_gene_6486_tx_9 36 - 1026657 1027256 . 1 600 0 -chrXII 1026657 1027383 HC_gene_6486_tx_10 1 - 1026657 1027383 . 1 727 0 -chrXII 1026657 1027462 HC_gene_6486_tx_11 1 - 1026657 1027462 . 1 806 0 -chrXII 1026657 1027532 HC_gene_6486_tx_12 80 - 1026657 1027532 . 1 876 0 -chrXII 1026657 1027896 HC_gene_6486_tx_13 1 - 1026657 1027896 . 1 1240 0 -chrXII 1026657 1027913 HC_gene_6486_tx_14 1 - 1026657 1027913 . 1 1257 0 -chrXII 1026657 1027914 HC_gene_6486_tx_15 2 - 1026657 1027914 . 1 1258 0 -chrXII 1026657 1027917 HC_gene_6486_tx_16 1 - 1026657 1027917 . 1 1261 0 -chrXII 1026657 1027926 HC_gene_6486_tx_17 1 - 1026657 1027926 . 1 1270 0 -chrXII 1026657 1027930 HC_gene_6486_tx_18 279 - 1026657 1027930 . 1 1274 0 -chrXII 1026657 1027930 HC_gene_6486_tx_19 1 - 1026657 1027930 . 2 671,389 0,885 -chrXII 1026657 1027930 HC_gene_6486_tx_20 1 - 1026657 1027930 . 2 764,424 0,850 -chrXII 1026657 1027930 HC_gene_6486_tx_21 1 - 1026657 1027930 . 2 902,160 0,1114 -chrXII 1026657 1027930 HC_gene_6486_tx_22 1 - 1026657 1027930 . 2 533,143 0,1131 -chrXII 1026657 1027930 HC_gene_6486_tx_23 1 - 1026657 1027930 . 2 1029,93 0,1181 -chrXII 1026657 1027930 HC_gene_6486_tx_24 1 - 1026657 1027930 . 2 1104,113 0,1161 -chrXII 1026657 1027930 HC_gene_6486_tx_25 1 - 1026657 1027930 . 2 105,1079 0,195 -chrXII 1026657 1027930 HC_gene_6486_tx_26 1 - 1026657 1027930 . 2 820,355 0,919 -chrXII 1026657 1027932 HC_gene_6486_tx_27 1 - 1026657 1027932 . 1 1276 0 -chrXII 1026855 1027809 LC_gene_6078_tx_1 1 + 1026855 1027809 . 1 955 0 -chrXII 1027976 1028681 MC_gene_6487_tx_1 1 - 1027976 1028681 . 1 706 0 -chrXII 1028796 1029947 HC_gene_6079_tx_1 1 + 1028796 1029947 . 2 60,695 0,457 -chrXII 1028837 1029916 HC_gene_6079_tx_2 4 + 1028837 1029916 . 2 32,664 0,416 -chrXII 1028837 1029918 HC_gene_6079_tx_3 3 + 1028837 1029918 . 2 32,666 0,416 -chrXII 1028837 1029925 HC_gene_6079_tx_4 2 + 1028837 1029925 . 2 32,673 0,416 -chrXII 1028837 1029926 HC_gene_6079_tx_5 2 + 1028837 1029926 . 2 32,674 0,416 -chrXII 1028837 1029926 HC_gene_6079_tx_6 1 + 1028837 1029926 . 1 1090 0 -chrXII 1028837 1029927 HC_gene_6079_tx_7 5 + 1028837 1029927 . 2 32,675 0,416 -chrXII 1028837 1029929 HC_gene_6079_tx_8 2 + 1028837 1029929 . 2 32,677 0,416 -chrXII 1028837 1029930 HC_gene_6079_tx_9 1 + 1028837 1029930 . 2 32,678 0,416 -chrXII 1028837 1029931 HC_gene_6079_tx_10 1 + 1028837 1029931 . 2 32,679 0,416 -chrXII 1028837 1029933 HC_gene_6079_tx_11 2 + 1028837 1029933 . 2 32,681 0,416 -chrXII 1028837 1029937 HC_gene_6079_tx_12 1 + 1028837 1029937 . 2 32,685 0,416 -chrXII 1028837 1029940 HC_gene_6079_tx_13 1 + 1028837 1029940 . 2 32,688 0,416 -chrXII 1028837 1029941 HC_gene_6079_tx_14 1 + 1028837 1029941 . 2 32,689 0,416 -chrXII 1028837 1029943 HC_gene_6079_tx_15 3 + 1028837 1029943 . 2 32,691 0,416 -chrXII 1028837 1029947 HC_gene_6079_tx_16 1 + 1028837 1029947 . 1 1111 0 -chrXII 1028837 1029952 HC_gene_6079_tx_17 1 + 1028837 1029952 . 2 32,700 0,416 -chrXII 1028837 1029953 HC_gene_6079_tx_18 4 + 1028837 1029953 . 2 32,701 0,416 -chrXII 1028837 1029954 HC_gene_6079_tx_19 1 + 1028837 1029954 . 2 32,702 0,416 -chrXII 1028837 1029962 HC_gene_6079_tx_20 1 + 1028837 1029962 . 1 1126 0 -chrXII 1028837 1029967 HC_gene_6079_tx_21 1 + 1028837 1029967 . 2 32,715 0,416 -chrXII 1028837 1029967 HC_gene_6079_tx_22 1 + 1028837 1029967 . 1 1131 0 -chrXII 1028837 1029970 HC_gene_6079_tx_23 1 + 1028837 1029970 . 2 32,718 0,416 -chrXII 1028837 1029971 HC_gene_6079_tx_24 1 + 1028837 1029971 . 2 32,719 0,416 -chrXII 1028837 1029971 HC_gene_6079_tx_25 2 + 1028837 1029971 . 1 1135 0 -chrXII 1028837 1029973 HC_gene_6079_tx_26 1 + 1028837 1029973 . 2 32,721 0,416 -chrXII 1028837 1029974 HC_gene_6079_tx_27 6 + 1028837 1029974 . 2 32,722 0,416 -chrXII 1028837 1029974 HC_gene_6079_tx_28 4 + 1028837 1029974 . 1 1138 0 -chrXII 1028837 1029975 HC_gene_6079_tx_29 8 + 1028837 1029975 . 2 32,723 0,416 -chrXII 1028837 1029976 HC_gene_6079_tx_30 3 + 1028837 1029976 . 2 32,724 0,416 -chrXII 1028837 1029976 HC_gene_6079_tx_31 1 + 1028837 1029976 . 2 21,724 0,416 -chrXII 1028837 1029976 HC_gene_6079_tx_32 3 + 1028837 1029976 . 1 1140 0 -chrXII 1028837 1029977 HC_gene_6079_tx_33 3 + 1028837 1029977 . 2 32,725 0,416 -chrXII 1028837 1029978 HC_gene_6079_tx_34 1 + 1028837 1029978 . 1 1142 0 -chrXII 1028837 1029991 HC_gene_6079_tx_35 1 + 1028837 1029991 . 2 32,739 0,416 -chrXII 1028837 1029996 HC_gene_6079_tx_36 1 + 1028837 1029996 . 2 32,744 0,416 -chrXII 1028837 1030001 HC_gene_6079_tx_37 2 + 1028837 1030001 . 1 1165 0 -chrXII 1028837 1030002 HC_gene_6079_tx_38 6 + 1028837 1030002 . 2 32,750 0,416 -chrXII 1028837 1030002 HC_gene_6079_tx_39 1 + 1028837 1030002 . 2 36,750 0,416 -chrXII 1028837 1030002 HC_gene_6079_tx_40 1 + 1028837 1030002 . 1 1166 0 -chrXII 1028837 1030003 HC_gene_6079_tx_41 1 + 1028837 1030003 . 3 32,632,64 0,416,1103 -chrXII 1028837 1030003 HC_gene_6079_tx_42 2 + 1028837 1030003 . 2 32,751 0,416 -chrXII 1028837 1030004 HC_gene_6079_tx_43 1 + 1028837 1030004 . 2 32,752 0,416 -chrXII 1028837 1030007 HC_gene_6079_tx_44 1 + 1028837 1030007 . 2 32,755 0,416 -chrXII 1028837 1030009 HC_gene_6079_tx_45 1 + 1028837 1030009 . 2 32,757 0,416 -chrXII 1028837 1030011 HC_gene_6079_tx_46 1 + 1028837 1030011 . 2 32,759 0,416 -chrXII 1028837 1030013 HC_gene_6079_tx_47 1 + 1028837 1030013 . 1 1177 0 -chrXII 1028837 1030015 HC_gene_6079_tx_48 2 + 1028837 1030015 . 1 1179 0 -chrXII 1028837 1030016 HC_gene_6079_tx_49 2 + 1028837 1030016 . 2 32,764 0,416 -chrXII 1028837 1030017 HC_gene_6079_tx_50 10 + 1028837 1030017 . 2 32,765 0,416 -chrXII 1028837 1030017 HC_gene_6079_tx_51 3 + 1028837 1030017 . 1 1181 0 -chrXII 1028837 1030018 HC_gene_6079_tx_52 1 + 1028837 1030018 . 2 36,766 0,416 -chrXII 1028837 1030018 HC_gene_6079_tx_53 2 + 1028837 1030018 . 2 32,766 0,416 -chrXII 1028837 1030018 HC_gene_6079_tx_54 1 + 1028837 1030018 . 1 1182 0 -chrXII 1028837 1030019 HC_gene_6079_tx_55 1 + 1028837 1030019 . 2 32,767 0,416 -chrXII 1028837 1030019 HC_gene_6079_tx_56 1 + 1028837 1030019 . 1 1183 0 -chrXII 1028837 1030020 HC_gene_6079_tx_57 1 + 1028837 1030020 . 2 32,768 0,416 -chrXII 1028837 1030021 HC_gene_6079_tx_58 7 + 1028837 1030021 . 2 32,769 0,416 -chrXII 1028837 1030021 HC_gene_6079_tx_59 2 + 1028837 1030021 . 1 1185 0 -chrXII 1028837 1030022 HC_gene_6079_tx_60 1 + 1028837 1030022 . 2 32,770 0,416 -chrXII 1028837 1030022 HC_gene_6079_tx_61 1 + 1028837 1030022 . 3 32,624,47 0,416,1139 -chrXII 1028837 1030023 HC_gene_6079_tx_62 1 + 1028837 1030023 . 1 1187 0 -chrXII 1028837 1030024 HC_gene_6079_tx_63 2 + 1028837 1030024 . 2 32,772 0,416 -chrXII 1028837 1030028 HC_gene_6079_tx_64 2 + 1028837 1030028 . 2 32,776 0,416 -chrXII 1028837 1030032 HC_gene_6079_tx_65 2 + 1028837 1030032 . 2 32,780 0,416 -chrXII 1028837 1030035 HC_gene_6079_tx_66 4 + 1028837 1030035 . 2 32,783 0,416 -chrXII 1028837 1030035 HC_gene_6079_tx_67 1 + 1028837 1030035 . 1 1199 0 -chrXII 1028837 1030036 HC_gene_6079_tx_68 3 + 1028837 1030036 . 2 32,784 0,416 -chrXII 1028837 1030038 HC_gene_6079_tx_69 1 + 1028837 1030038 . 2 32,786 0,416 -chrXII 1028837 1030039 HC_gene_6079_tx_70 1 + 1028837 1030039 . 2 32,787 0,416 -chrXII 1028837 1030042 HC_gene_6079_tx_71 4 + 1028837 1030042 . 2 32,790 0,416 -chrXII 1028837 1030047 HC_gene_6079_tx_72 1 + 1028837 1030047 . 2 32,795 0,416 -chrXII 1028837 1030050 HC_gene_6079_tx_73 1 + 1028837 1030050 . 2 32,798 0,416 -chrXII 1028837 1030066 HC_gene_6079_tx_74 1 + 1028837 1030066 . 2 32,814 0,416 -chrXII 1028837 1030068 HC_gene_6079_tx_75 2 + 1028837 1030068 . 2 32,816 0,416 -chrXII 1028837 1030069 HC_gene_6079_tx_76 1 + 1028837 1030069 . 1 1233 0 -chrXII 1028837 1030072 HC_gene_6079_tx_77 1 + 1028837 1030072 . 2 36,820 0,416 -chrXII 1028837 1030075 HC_gene_6079_tx_78 1 + 1028837 1030075 . 2 32,823 0,416 -chrXII 1028837 1030076 HC_gene_6079_tx_79 3 + 1028837 1030076 . 2 32,824 0,416 -chrXII 1028837 1030076 HC_gene_6079_tx_80 1 + 1028837 1030076 . 1 1240 0 -chrXII 1028837 1030078 HC_gene_6079_tx_81 1 + 1028837 1030078 . 2 32,826 0,416 -chrXII 1028837 1030080 HC_gene_6079_tx_82 1 + 1028837 1030080 . 2 32,828 0,416 -chrXII 1029310 1029914 HC_gene_6079_tx_83 1 + 1029310 1029914 . 1 605 0 -chrXII 1029310 1029916 HC_gene_6079_tx_84 6 + 1029310 1029916 . 1 607 0 -chrXII 1029310 1029917 HC_gene_6079_tx_85 9 + 1029310 1029917 . 1 608 0 -chrXII 1029310 1029918 HC_gene_6079_tx_86 2 + 1029310 1029918 . 1 609 0 -chrXII 1029310 1029923 HC_gene_6079_tx_87 2 + 1029310 1029923 . 1 614 0 -chrXII 1029310 1029924 HC_gene_6079_tx_88 8 + 1029310 1029924 . 1 615 0 -chrXII 1029310 1029925 HC_gene_6079_tx_89 4 + 1029310 1029925 . 1 616 0 -chrXII 1029310 1029926 HC_gene_6079_tx_90 7 + 1029310 1029926 . 1 617 0 -chrXII 1029310 1029927 HC_gene_6079_tx_91 52 + 1029310 1029927 . 1 618 0 -chrXII 1029310 1029928 HC_gene_6079_tx_92 2 + 1029310 1029928 . 1 619 0 -chrXII 1029310 1029929 HC_gene_6079_tx_93 5 + 1029310 1029929 . 1 620 0 -chrXII 1029310 1029930 HC_gene_6079_tx_94 4 + 1029310 1029930 . 1 621 0 -chrXII 1029310 1029931 HC_gene_6079_tx_95 8 + 1029310 1029931 . 1 622 0 -chrXII 1029310 1029932 HC_gene_6079_tx_96 6 + 1029310 1029932 . 1 623 0 -chrXII 1029310 1029933 HC_gene_6079_tx_97 4 + 1029310 1029933 . 1 624 0 -chrXII 1029310 1029934 HC_gene_6079_tx_98 14 + 1029310 1029934 . 1 625 0 -chrXII 1029310 1029935 HC_gene_6079_tx_99 8 + 1029310 1029935 . 1 626 0 -chrXII 1029310 1029936 HC_gene_6079_tx_100 4 + 1029310 1029936 . 1 627 0 -chrXII 1029310 1029937 HC_gene_6079_tx_101 3 + 1029310 1029937 . 1 628 0 -chrXII 1029310 1029938 HC_gene_6079_tx_102 3 + 1029310 1029938 . 1 629 0 -chrXII 1029310 1029939 HC_gene_6079_tx_103 2 + 1029310 1029939 . 1 630 0 -chrXII 1029310 1029940 HC_gene_6079_tx_104 11 + 1029310 1029940 . 1 631 0 -chrXII 1029310 1029941 HC_gene_6079_tx_105 11 + 1029310 1029941 . 1 632 0 -chrXII 1029310 1029942 HC_gene_6079_tx_106 18 + 1029310 1029942 . 1 633 0 -chrXII 1029310 1029943 HC_gene_6079_tx_107 4 + 1029310 1029943 . 1 634 0 -chrXII 1029310 1029947 HC_gene_6079_tx_108 2 + 1029310 1029947 . 1 638 0 -chrXII 1029310 1029948 HC_gene_6079_tx_109 4 + 1029310 1029948 . 1 639 0 -chrXII 1029310 1029951 HC_gene_6079_tx_110 3 + 1029310 1029951 . 1 642 0 -chrXII 1029310 1029952 HC_gene_6079_tx_111 8 + 1029310 1029952 . 1 643 0 -chrXII 1029310 1029953 HC_gene_6079_tx_112 16 + 1029310 1029953 . 1 644 0 -chrXII 1029310 1029954 HC_gene_6079_tx_113 2 + 1029310 1029954 . 1 645 0 -chrXII 1029310 1029956 HC_gene_6079_tx_114 2 + 1029310 1029956 . 1 647 0 -chrXII 1029310 1029957 HC_gene_6079_tx_115 1 + 1029310 1029957 . 1 648 0 -chrXII 1029310 1029959 HC_gene_6079_tx_116 1 + 1029310 1029959 . 1 650 0 -chrXII 1029310 1029964 HC_gene_6079_tx_117 3 + 1029310 1029964 . 1 655 0 -chrXII 1029310 1029965 HC_gene_6079_tx_118 4 + 1029310 1029965 . 1 656 0 -chrXII 1029310 1029966 HC_gene_6079_tx_119 3 + 1029310 1029966 . 1 657 0 -chrXII 1029310 1029967 HC_gene_6079_tx_120 4 + 1029310 1029967 . 1 658 0 -chrXII 1029310 1029968 HC_gene_6079_tx_121 1 + 1029310 1029968 . 1 659 0 -chrXII 1029310 1029970 HC_gene_6079_tx_122 3 + 1029310 1029970 . 1 661 0 -chrXII 1029310 1029971 HC_gene_6079_tx_123 10 + 1029310 1029971 . 1 662 0 -chrXII 1029310 1029972 HC_gene_6079_tx_124 9 + 1029310 1029972 . 1 663 0 -chrXII 1029310 1029973 HC_gene_6079_tx_125 23 + 1029310 1029973 . 1 664 0 -chrXII 1029310 1029974 HC_gene_6079_tx_126 66 + 1029310 1029974 . 1 665 0 -chrXII 1029310 1029975 HC_gene_6079_tx_127 68 + 1029310 1029975 . 1 666 0 -chrXII 1029310 1029976 HC_gene_6079_tx_128 44 + 1029310 1029976 . 1 667 0 -chrXII 1029310 1029977 HC_gene_6079_tx_129 15 + 1029310 1029977 . 1 668 0 -chrXII 1029310 1029978 HC_gene_6079_tx_130 11 + 1029310 1029978 . 1 669 0 -chrXII 1029310 1029979 HC_gene_6079_tx_131 7 + 1029310 1029979 . 1 670 0 -chrXII 1029310 1029980 HC_gene_6079_tx_132 3 + 1029310 1029980 . 1 671 0 -chrXII 1029310 1029982 HC_gene_6079_tx_133 1 + 1029310 1029982 . 1 673 0 -chrXII 1029310 1029984 HC_gene_6079_tx_134 1 + 1029310 1029984 . 1 675 0 -chrXII 1029310 1029993 HC_gene_6079_tx_135 1 + 1029310 1029993 . 1 684 0 -chrXII 1029310 1029994 HC_gene_6079_tx_136 1 + 1029310 1029994 . 1 685 0 -chrXII 1029310 1029995 HC_gene_6079_tx_137 2 + 1029310 1029995 . 1 686 0 -chrXII 1029310 1029996 HC_gene_6079_tx_138 2 + 1029310 1029996 . 1 687 0 -chrXII 1029310 1029997 HC_gene_6079_tx_139 2 + 1029310 1029997 . 1 688 0 -chrXII 1029310 1030000 HC_gene_6079_tx_140 2 + 1029310 1030000 . 1 691 0 -chrXII 1029310 1030001 HC_gene_6079_tx_141 13 + 1029310 1030001 . 1 692 0 -chrXII 1029310 1030002 HC_gene_6079_tx_142 33 + 1029310 1030002 . 1 693 0 -chrXII 1029310 1030003 HC_gene_6079_tx_143 19 + 1029310 1030003 . 1 694 0 -chrXII 1029310 1030004 HC_gene_6079_tx_144 3 + 1029310 1030004 . 1 695 0 -chrXII 1029310 1030005 HC_gene_6079_tx_145 3 + 1029310 1030005 . 1 696 0 -chrXII 1029310 1030007 HC_gene_6079_tx_146 9 + 1029310 1030007 . 1 698 0 -chrXII 1029310 1030009 HC_gene_6079_tx_147 2 + 1029310 1030009 . 1 700 0 -chrXII 1029310 1030010 HC_gene_6079_tx_148 7 + 1029310 1030010 . 1 701 0 -chrXII 1029310 1030011 HC_gene_6079_tx_149 1 + 1029310 1030011 . 1 702 0 -chrXII 1029310 1030012 HC_gene_6079_tx_150 19 + 1029310 1030012 . 1 703 0 -chrXII 1029310 1030013 HC_gene_6079_tx_151 9 + 1029310 1030013 . 1 704 0 -chrXII 1029310 1030014 HC_gene_6079_tx_152 7 + 1029310 1030014 . 1 705 0 -chrXII 1029310 1030015 HC_gene_6079_tx_153 11 + 1029310 1030015 . 1 706 0 -chrXII 1029310 1030016 HC_gene_6079_tx_154 12 + 1029310 1030016 . 1 707 0 -chrXII 1029310 1030017 HC_gene_6079_tx_155 156 + 1029310 1030017 . 1 708 0 -chrXII 1029310 1030018 HC_gene_6079_tx_156 39 + 1029310 1030018 . 1 709 0 -chrXII 1029310 1030019 HC_gene_6079_tx_157 31 + 1029310 1030019 . 1 710 0 -chrXII 1029310 1030020 HC_gene_6079_tx_158 6 + 1029310 1030020 . 1 711 0 -chrXII 1029310 1030021 HC_gene_6079_tx_159 80 + 1029310 1030021 . 1 712 0 -chrXII 1029310 1030022 HC_gene_6079_tx_160 15 + 1029310 1030022 . 1 713 0 -chrXII 1029310 1030023 HC_gene_6079_tx_161 3 + 1029310 1030023 . 1 714 0 -chrXII 1029310 1030024 HC_gene_6079_tx_162 27 + 1029310 1030024 . 1 715 0 -chrXII 1029310 1030025 HC_gene_6079_tx_163 1 + 1029310 1030025 . 1 716 0 -chrXII 1029310 1030026 HC_gene_6079_tx_164 3 + 1029310 1030026 . 1 717 0 -chrXII 1029310 1030028 HC_gene_6079_tx_165 6 + 1029310 1030028 . 1 719 0 -chrXII 1029310 1030029 HC_gene_6079_tx_166 3 + 1029310 1030029 . 1 720 0 -chrXII 1029310 1030030 HC_gene_6079_tx_167 1 + 1029310 1030030 . 1 721 0 -chrXII 1029310 1030032 HC_gene_6079_tx_168 16 + 1029310 1030032 . 1 723 0 -chrXII 1029310 1030033 HC_gene_6079_tx_169 2 + 1029310 1030033 . 1 724 0 -chrXII 1029310 1030035 HC_gene_6079_tx_170 6 + 1029310 1030035 . 1 726 0 -chrXII 1029310 1030036 HC_gene_6079_tx_171 13 + 1029310 1030036 . 1 727 0 -chrXII 1029310 1030039 HC_gene_6079_tx_172 3 + 1029310 1030039 . 1 730 0 -chrXII 1029310 1030040 HC_gene_6079_tx_173 3 + 1029310 1030040 . 1 731 0 -chrXII 1029310 1030041 HC_gene_6079_tx_174 2 + 1029310 1030041 . 1 732 0 -chrXII 1029310 1030042 HC_gene_6079_tx_175 21 + 1029310 1030042 . 1 733 0 -chrXII 1029310 1030043 HC_gene_6079_tx_176 5 + 1029310 1030043 . 1 734 0 -chrXII 1029310 1030044 HC_gene_6079_tx_177 9 + 1029310 1030044 . 1 735 0 -chrXII 1029310 1030045 HC_gene_6079_tx_178 3 + 1029310 1030045 . 1 736 0 -chrXII 1029310 1030046 HC_gene_6079_tx_179 1 + 1029310 1030046 . 1 737 0 -chrXII 1029310 1030047 HC_gene_6079_tx_180 3 + 1029310 1030047 . 1 738 0 -chrXII 1029310 1030048 HC_gene_6079_tx_181 2 + 1029310 1030048 . 1 739 0 -chrXII 1029310 1030049 HC_gene_6079_tx_182 2 + 1029310 1030049 . 1 740 0 -chrXII 1029310 1030050 HC_gene_6079_tx_183 1 + 1029310 1030050 . 1 741 0 -chrXII 1029310 1030051 HC_gene_6079_tx_184 2 + 1029310 1030051 . 1 742 0 -chrXII 1029310 1030056 HC_gene_6079_tx_185 1 + 1029310 1030056 . 1 747 0 -chrXII 1029310 1030058 HC_gene_6079_tx_186 4 + 1029310 1030058 . 1 749 0 -chrXII 1029310 1030059 HC_gene_6079_tx_187 2 + 1029310 1030059 . 1 750 0 -chrXII 1029310 1030060 HC_gene_6079_tx_188 2 + 1029310 1030060 . 1 751 0 -chrXII 1029310 1030061 HC_gene_6079_tx_189 2 + 1029310 1030061 . 1 752 0 -chrXII 1029310 1030062 HC_gene_6079_tx_190 1 + 1029310 1030062 . 1 753 0 -chrXII 1029310 1030064 HC_gene_6079_tx_191 1 + 1029310 1030064 . 1 755 0 -chrXII 1029310 1030065 HC_gene_6079_tx_192 1 + 1029310 1030065 . 1 756 0 -chrXII 1029310 1030066 HC_gene_6079_tx_193 7 + 1029310 1030066 . 1 757 0 -chrXII 1029310 1030067 HC_gene_6079_tx_194 22 + 1029310 1030067 . 1 758 0 -chrXII 1029310 1030068 HC_gene_6079_tx_195 6 + 1029310 1030068 . 1 759 0 -chrXII 1029310 1030069 HC_gene_6079_tx_196 5 + 1029310 1030069 . 1 760 0 -chrXII 1029310 1030070 HC_gene_6079_tx_197 12 + 1029310 1030070 . 1 761 0 -chrXII 1029310 1030071 HC_gene_6079_tx_198 2 + 1029310 1030071 . 1 762 0 -chrXII 1029310 1030072 HC_gene_6079_tx_199 6 + 1029310 1030072 . 1 763 0 -chrXII 1029310 1030073 HC_gene_6079_tx_200 19 + 1029310 1030073 . 1 764 0 -chrXII 1029310 1030074 HC_gene_6079_tx_201 15 + 1029310 1030074 . 1 765 0 -chrXII 1029310 1030075 HC_gene_6079_tx_202 2 + 1029310 1030075 . 1 766 0 -chrXII 1029310 1030076 HC_gene_6079_tx_203 38 + 1029310 1030076 . 1 767 0 -chrXII 1029310 1030077 HC_gene_6079_tx_204 5 + 1029310 1030077 . 1 768 0 -chrXII 1029310 1030080 HC_gene_6079_tx_205 2 + 1029310 1030080 . 1 771 0 -chrXII 1029858 1030612 MC_gene_6488_tx_1 1 - 1029858 1030612 . 1 755 0 -chrXII 1030227 1030622 HC_gene_6080_tx_1 1 + 1030227 1030622 . 1 396 0 -chrXII 1030794 1032097 HC_gene_6081_tx_1 125 + 1030794 1032097 . 1 1304 0 -chrXII 1030794 1032097 HC_gene_6081_tx_2 1 + 1030794 1032097 . 2 340,775 0,529 -chrXII 1030794 1032337 HC_gene_6081_tx_3 2 + 1030794 1032337 . 1 1544 0 -chrXII 1030806 1032097 HC_gene_6081_tx_4 1 + 1030806 1032097 . 2 153,999 0,293 -chrXII 1030941 1032097 HC_gene_6081_tx_5 8 + 1030941 1032097 . 1 1157 0 -chrXII 1031026 1032097 HC_gene_6081_tx_6 49 + 1031026 1032097 . 1 1072 0 -chrXII 1031026 1032097 HC_gene_6081_tx_7 1 + 1031026 1032097 . 2 450,471 0,601 -chrXII 1031379 1032097 HC_gene_6081_tx_8 1 + 1031379 1032097 . 2 54,459 0,260 -chrXII 1031432 1032097 HC_gene_6081_tx_9 171 + 1031432 1032097 . 1 666 0 -chrXII 1031432 1032097 HC_gene_6081_tx_10 1 + 1031432 1032097 . 2 188,374 0,292 -chrXII 1031432 1032097 HC_gene_6081_tx_11 1 + 1031432 1032097 . 2 318,274 0,392 -chrXII 1031960 1032184 MC_gene_6489_tx_1 1 - 1031960 1032184 . 1 225 0 -chrXII 1032443 1035900 HC_gene_6082_tx_1 8 + 1032443 1035900 . 1 3458 0 -chrXII 1032695 1035900 HC_gene_6082_tx_2 1 + 1032695 1035900 . 1 3206 0 -chrXII 1033555 1035701 LC_gene_6490_tx_1 1 - 1033555 1035701 . 1 2147 0 -chrXII 1035977 1038032 HC_gene_6083_tx_1 1 + 1035977 1038032 . 1 2056 0 -chrXII 1035977 1038039 HC_gene_6083_tx_2 1 + 1035977 1038039 . 1 2063 0 -chrXII 1035977 1038059 HC_gene_6083_tx_3 1 + 1035977 1038059 . 1 2083 0 -chrXII 1035977 1038937 HC_gene_6083_tx_4 3 + 1035977 1038937 . 1 2961 0 -chrXII 1035977 1038937 HC_gene_6083_tx_5 1 + 1035977 1038937 . 2 1650,1146 0,1815 -chrXII 1035977 1039145 HC_gene_6083_tx_6 1 + 1035977 1039145 . 1 3169 0 -chrXII 1038741 1041513 HC_gene_6491_tx_1 30 - 1038741 1041513 . 1 2773 0 -chrXII 1038741 1041513 HC_gene_6491_tx_2 1 - 1038741 1041513 . 2 1209,1511 0,1262 -chrXII 1038914 1041513 HC_gene_6491_tx_3 9 - 1038914 1041513 . 1 2600 0 -chrXII 1039047 1041513 HC_gene_6491_tx_4 2 - 1039047 1041513 . 1 2467 0 -chrXII 1039051 1041513 HC_gene_6491_tx_5 1 - 1039051 1041513 . 1 2463 0 -chrXII 1039052 1041513 HC_gene_6491_tx_6 3 - 1039052 1041513 . 1 2462 0 -chrXII 1039056 1041513 HC_gene_6491_tx_7 3 - 1039056 1041513 . 1 2458 0 -chrXII 1039057 1041513 HC_gene_6491_tx_8 2 - 1039057 1041513 . 1 2457 0 -chrXII 1039063 1041513 HC_gene_6491_tx_9 1 - 1039063 1041513 . 1 2451 0 -chrXII 1039065 1041513 HC_gene_6491_tx_10 1 - 1039065 1041513 . 1 2449 0 -chrXII 1039066 1041513 HC_gene_6491_tx_11 2 - 1039066 1041513 . 1 2448 0 -chrXII 1039067 1041513 HC_gene_6491_tx_12 1 - 1039067 1041513 . 1 2447 0 -chrXII 1039071 1041513 HC_gene_6491_tx_13 1 - 1039071 1041513 . 1 2443 0 -chrXII 1039075 1041513 HC_gene_6491_tx_14 2 - 1039075 1041513 . 1 2439 0 -chrXII 1039077 1041513 HC_gene_6491_tx_15 3 - 1039077 1041513 . 1 2437 0 -chrXII 1039078 1041513 HC_gene_6491_tx_16 1 - 1039078 1041513 . 1 2436 0 -chrXII 1039082 1041513 HC_gene_6491_tx_17 1 - 1039082 1041513 . 2 537,1774 0,658 -chrXII 1039083 1041513 HC_gene_6491_tx_18 1 - 1039083 1041513 . 1 2431 0 -chrXII 1039084 1041513 HC_gene_6491_tx_19 1 - 1039084 1041513 . 1 2430 0 -chrXII 1039085 1041513 HC_gene_6491_tx_20 2 - 1039085 1041513 . 1 2429 0 -chrXII 1039086 1041513 HC_gene_6491_tx_21 1 - 1039086 1041513 . 1 2428 0 -chrXII 1039088 1041513 HC_gene_6491_tx_22 1 - 1039088 1041513 . 1 2426 0 -chrXII 1039089 1041513 HC_gene_6491_tx_23 1 - 1039089 1041513 . 1 2425 0 -chrXII 1039091 1041513 HC_gene_6491_tx_24 1 - 1039091 1041513 . 1 2423 0 -chrXII 1039092 1041513 HC_gene_6491_tx_25 1 - 1039092 1041513 . 1 2422 0 -chrXII 1039097 1041513 HC_gene_6491_tx_26 1 - 1039097 1041513 . 1 2417 0 -chrXII 1039098 1041513 HC_gene_6491_tx_27 1 - 1039098 1041513 . 1 2416 0 -chrXII 1039101 1041513 HC_gene_6491_tx_28 1 - 1039101 1041513 . 1 2413 0 -chrXII 1039109 1041513 HC_gene_6491_tx_29 1 - 1039109 1041513 . 1 2405 0 -chrXII 1039117 1041513 HC_gene_6491_tx_30 3 - 1039117 1041513 . 1 2397 0 -chrXII 1039117 1041513 HC_gene_6491_tx_31 1 - 1039117 1041513 . 2 756,910 0,1487 -chrXII 1039118 1041513 HC_gene_6491_tx_32 1 - 1039118 1041513 . 1 2396 0 -chrXII 1039120 1041513 HC_gene_6491_tx_33 1 - 1039120 1041513 . 1 2394 0 -chrXII 1039122 1041513 HC_gene_6491_tx_34 1 - 1039122 1041513 . 1 2392 0 -chrXII 1039123 1041513 HC_gene_6491_tx_35 3 - 1039123 1041513 . 1 2391 0 -chrXII 1041051 1041513 HC_gene_6491_tx_36 9 - 1041051 1041513 . 1 463 0 -chrXII 1041752 1042283 HC_gene_6084_tx_1 3 + 1041752 1042283 . 1 532 0 -chrXII 1041752 1042670 HC_gene_6084_tx_2 1 + 1041752 1042670 . 1 919 0 -chrXII 1041752 1043070 HC_gene_6084_tx_3 4 + 1041752 1043070 . 1 1319 0 -chrXII 1042201 1043070 HC_gene_6084_tx_4 3 + 1042201 1043070 . 1 870 0 -chrXII 1042223 1043045 HC_gene_6492_tx_1 1 - 1042223 1043045 . 1 823 0 -chrXII 1042299 1043045 HC_gene_6492_tx_2 5 - 1042299 1043045 . 1 747 0 -chrXII 1042960 1043577 HC_gene_6493_tx_1 1 - 1042960 1043577 . 1 618 0 -chrXII 1043881 1045083 HC_gene_6085_tx_1 1 + 1043881 1045083 . 1 1203 0 -chrXII 1047638 1051963 HC_gene_6086_tx_1 1 + 1047638 1051963 . 1 4326 0 -chrXII 1048946 1051963 HC_gene_6086_tx_2 3 + 1048946 1051963 . 1 3018 0 -chrXII 1049745 1051963 HC_gene_6086_tx_3 2 + 1049745 1051963 . 1 2219 0 -chrXII 1050002 1051963 HC_gene_6086_tx_4 4 + 1050002 1051963 . 1 1962 0 -chrXII 1050728 1051961 MC_gene_6494_tx_1 1 - 1050728 1051961 . 1 1234 0 -chrXII 1051292 1051963 HC_gene_6086_tx_5 8 + 1051292 1051963 . 1 672 0 -chrXII 1051400 1051963 HC_gene_6086_tx_6 3 + 1051400 1051963 . 1 564 0 -chrXII 1052207 1053164 HC_gene_6495_tx_1 1 - 1052207 1053164 . 1 958 0 -chrXII 1052423 1053164 HC_gene_6495_tx_2 65 - 1052423 1053164 . 1 742 0 -chrXII 1053361 1054693 LC_gene_6496_tx_1 1 - 1053361 1054693 . 1 1333 0 -chrXII 1053416 1054958 HC_gene_6087_tx_1 47 + 1053416 1054958 . 1 1543 0 -chrXII 1053416 1054958 HC_gene_6087_tx_2 1 + 1053416 1054958 . 2 347,792 0,751 -chrXII 1053648 1054958 HC_gene_6087_tx_3 4 + 1053648 1054958 . 1 1311 0 -chrXII 1053881 1054958 HC_gene_6087_tx_4 3 + 1053881 1054958 . 1 1078 0 -chrXII 1055057 1055764 HC_gene_6088_tx_1 23 + 1055057 1055764 . 1 708 0 -chrXII 1055057 1055764 HC_gene_6088_tx_2 1 + 1055057 1055764 . 2 437,148 0,560 -chrXII 1055057 1056065 HC_gene_6088_tx_3 3 + 1055057 1056065 . 1 1009 0 -chrXII 1055614 1056805 HC_gene_6497_tx_1 5 - 1055614 1056805 . 1 1192 0 -chrXII 1055614 1057122 HC_gene_6497_tx_3 3 - 1055614 1057122 . 1 1509 0 -chrXII 1055693 1056805 HC_gene_6497_tx_2 1 - 1055693 1056805 . 1 1113 0 -chrXII 1055693 1057122 HC_gene_6497_tx_4 1 - 1055693 1057122 . 1 1430 0 -chrXII 1057294 1058576 HC_gene_6089_tx_1 36 + 1057294 1058576 . 1 1283 0 -chrXII 1057294 1058662 HC_gene_6089_tx_2 5 + 1057294 1058662 . 1 1369 0 -chrXII 1057294 1058802 HC_gene_6089_tx_3 1 + 1057294 1058802 . 1 1509 0 -chrXII 1057294 1059170 HC_gene_6089_tx_4 2 + 1057294 1059170 . 1 1877 0 -chrXII 1058498 1059309 MC_gene_6498_tx_1 1 - 1058498 1059309 . 1 812 0 -chrXII 1059362 1059727 LC_gene_6090_tx_1 1 + 1059362 1059727 . 1 366 0 -chrXII 1059577 1060934 MC_gene_6499_tx_1 1 - 1059577 1060934 . 1 1358 0 -chrXII 1059665 1061072 MC_gene_6499_tx_2 1 - 1059665 1061072 . 1 1408 0 -chrXII 1061938 1063415 LC_gene_6091_tx_1 1 + 1061938 1063415 . 1 1478 0 -chrXII 1065341 1072815 LC_gene_6500_tx_1 1 - 1065341 1072815 . 2 444,484 0,6991 -chrXII 1069294 1077905 LC_gene_6092_tx_1 1 + 1069294 1077905 . 2 472,1208 0,7404 -chrXIII 8104 8462 MC_gene_6501_tx_1 1 + 8104 8462 . 1 359 0 -chrXIII 8778 9853 MC_gene_6858_tx_1 1 - 8778 9853 . 1 1076 0 -chrXIII 9056 9678 MC_gene_6858_tx_2 1 - 9056 9678 . 1 623 0 -chrXIII 10163 11485 HC_gene_6502_tx_1 24 + 10163 11485 . 1 1323 0 -chrXIII 10163 11485 HC_gene_6502_tx_2 1 + 10163 11485 . 2 738,470 0,853 -chrXIII 10330 11485 HC_gene_6502_tx_3 4 + 10330 11485 . 1 1156 0 -chrXIII 10624 11485 HC_gene_6502_tx_4 2 + 10624 11485 . 1 862 0 -chrXIII 11394 11912 HC_gene_6859_tx_1 15 - 11394 11912 . 1 519 0 -chrXIII 11394 12099 HC_gene_6859_tx_2 14 - 11394 12099 . 1 706 0 -chrXIII 11394 13276 HC_gene_6859_tx_3 56 - 11394 13276 . 1 1883 0 -chrXIII 11394 13276 HC_gene_6859_tx_4 1 - 11394 13276 . 2 1107,679 0,1204 -chrXIII 13507 13878 HC_gene_6503_tx_1 1 + 13507 13878 . 1 372 0 -chrXIII 13507 14031 HC_gene_6503_tx_2 21 + 13507 14031 . 1 525 0 -chrXIII 13614 14031 HC_gene_6503_tx_3 1 + 13614 14031 . 1 418 0 -chrXIII 13730 14031 HC_gene_6503_tx_4 1 + 13730 14031 . 1 302 0 -chrXIII 14204 14764 HC_gene_6860_tx_1 40 - 14204 14764 . 1 561 0 -chrXIII 14344 14764 HC_gene_6860_tx_2 266 - 14344 14764 . 1 421 0 -chrXIII 14930 15641 HC_gene_6861_tx_1 2 - 14930 15641 . 1 712 0 -chrXIII 14930 15701 HC_gene_6861_tx_2 3 - 14930 15701 . 1 772 0 -chrXIII 14930 15982 HC_gene_6861_tx_3 2 - 14930 15982 . 1 1053 0 -chrXIII 14930 16034 HC_gene_6861_tx_4 2 - 14930 16034 . 1 1105 0 -chrXIII 14930 16286 HC_gene_6861_tx_5 4 - 14930 16286 . 1 1357 0 -chrXIII 14930 16399 HC_gene_6861_tx_6 2 - 14930 16399 . 1 1470 0 -chrXIII 14930 16725 HC_gene_6861_tx_7 25 - 14930 16725 . 1 1796 0 -chrXIII 14930 16725 HC_gene_6861_tx_8 1 - 14930 16725 . 2 814,915 0,881 -chrXIII 14930 16725 HC_gene_6861_tx_9 1 - 14930 16725 . 2 832,878 0,918 -chrXIII 15006 15305 LC_gene_6504_tx_1 1 + 15006 15305 . 1 300 0 -chrXIII 17015 18951 HC_gene_6505_tx_1 63 + 17015 18951 . 1 1937 0 -chrXIII 17015 18951 HC_gene_6505_tx_2 1 + 17015 18951 . 2 872,943 0,994 -chrXIII 17015 18951 HC_gene_6505_tx_3 1 + 17015 18951 . 2 974,872 0,1065 -chrXIII 17015 18951 HC_gene_6505_tx_4 1 + 17015 18951 . 2 1811,78 0,1859 -chrXIII 17248 18951 HC_gene_6505_tx_5 6 + 17248 18951 . 1 1704 0 -chrXIII 18515 18951 HC_gene_6505_tx_6 13 + 18515 18951 . 1 437 0 -chrXIII 18844 19346 HC_gene_6862_tx_1 16 - 18844 19346 . 1 503 0 -chrXIII 18844 19413 HC_gene_6862_tx_2 10 - 18844 19413 . 1 570 0 -chrXIII 18844 19718 HC_gene_6862_tx_5 32 - 18844 19718 . 1 875 0 -chrXIII 18844 19923 HC_gene_6862_tx_6 16 - 18844 19923 . 1 1080 0 -chrXIII 18844 20482 HC_gene_6862_tx_9 99 - 18844 20482 . 1 1639 0 -chrXIII 18926 19346 HC_gene_6862_tx_3 6 - 18926 19346 . 1 421 0 -chrXIII 18926 19413 HC_gene_6862_tx_4 5 - 18926 19413 . 1 488 0 -chrXIII 18926 19718 HC_gene_6862_tx_7 5 - 18926 19718 . 1 793 0 -chrXIII 18926 19923 HC_gene_6862_tx_8 3 - 18926 19923 . 1 998 0 -chrXIII 18926 20482 HC_gene_6862_tx_10 28 - 18926 20482 . 1 1557 0 -chrXIII 20679 21008 HC_gene_6863_tx_1 13 - 20679 21008 . 1 330 0 -chrXIII 20679 21144 HC_gene_6863_tx_2 32 - 20679 21144 . 1 466 0 -chrXIII 20679 21205 HC_gene_6863_tx_3 14 - 20679 21205 . 1 527 0 -chrXIII 20679 21723 HC_gene_6863_tx_4 257 - 20679 21723 . 1 1045 0 -chrXIII 21034 22053 MC_gene_6506_tx_1 1 + 21034 22053 . 1 1020 0 -chrXIII 21922 22421 HC_gene_6864_tx_1 33 - 21922 22421 . 1 500 0 -chrXIII 21922 23140 HC_gene_6864_tx_2 12 - 21922 23140 . 1 1219 0 -chrXIII 21922 23213 HC_gene_6864_tx_3 13 - 21922 23213 . 1 1292 0 -chrXIII 21922 23213 HC_gene_6864_tx_4 1 - 21922 23213 . 2 993,241 0,1051 -chrXIII 21922 23322 HC_gene_6864_tx_5 14 - 21922 23322 . 1 1401 0 -chrXIII 21922 23322 HC_gene_6864_tx_6 1 - 21922 23322 . 2 26,1333 0,68 -chrXIII 21922 23711 HC_gene_6864_tx_7 19 - 21922 23711 . 2 1439,53 0,1737 -chrXIII 21922 23711 HC_gene_6864_tx_8 11 - 21922 23711 . 1 1790 0 -chrXIII 21922 23711 HC_gene_6864_tx_9 1 - 21922 23711 . 2 680,1038 0,752 -chrXIII 21922 23711 HC_gene_6864_tx_10 1 - 21922 23711 . 2 1439,57 0,1733 -chrXIII 21922 23877 HC_gene_6864_tx_11 1 - 21922 23877 . 2 1439,219 0,1737 -chrXIII 24687 26530 HC_gene_6507_tx_1 2 + 24687 26530 . 1 1844 0 -chrXIII 25869 26819 MC_gene_6865_tx_1 1 - 25869 26819 . 1 951 0 -chrXIII 26119 26530 HC_gene_6507_tx_2 2 + 26119 26530 . 1 412 0 -chrXIII 26794 28050 HC_gene_6508_tx_1 9 + 26794 28050 . 1 1257 0 -chrXIII 26794 28143 HC_gene_6508_tx_2 1 + 26794 28143 . 1 1350 0 -chrXIII 26870 28050 HC_gene_6508_tx_3 66 + 26870 28050 . 1 1181 0 -chrXIII 26870 28143 HC_gene_6508_tx_4 15 + 26870 28143 . 1 1274 0 -chrXIII 27910 28224 HC_gene_6866_tx_1 10 - 27910 28224 . 1 315 0 -chrXIII 27910 28396 HC_gene_6866_tx_2 18 - 27910 28396 . 1 487 0 -chrXIII 27910 29097 HC_gene_6866_tx_3 13 - 27910 29097 . 1 1188 0 -chrXIII 27910 29449 HC_gene_6866_tx_4 6 - 27910 29449 . 1 1540 0 -chrXIII 27910 29616 HC_gene_6866_tx_5 13 - 27910 29616 . 1 1707 0 -chrXIII 27910 29868 HC_gene_6866_tx_6 53 - 27910 29868 . 1 1959 0 -chrXIII 27910 29868 HC_gene_6866_tx_7 1 - 27910 29868 . 2 1673,148 0,1811 -chrXIII 27910 29868 HC_gene_6866_tx_8 1 - 27910 29868 . 2 829,394 0,1565 -chrXIII 27910 29868 HC_gene_6866_tx_9 1 - 27910 29868 . 2 829,643 0,1316 -chrXIII 27910 29868 HC_gene_6866_tx_10 1 - 27910 29868 . 2 1156,617 0,1342 -chrXIII 27910 29868 HC_gene_6866_tx_11 1 - 27910 29868 . 2 470,1408 0,551 -chrXIII 29380 29928 LC_gene_6509_tx_1 1 + 29380 29928 . 1 549 0 -chrXIII 29751 31696 MC_gene_6867_tx_1 1 - 29751 31696 . 1 1946 0 -chrXIII 30155 31746 HC_gene_6510_tx_1 1 + 30155 31746 . 1 1592 0 -chrXIII 30583 31746 HC_gene_6510_tx_2 52 + 30583 31746 . 1 1164 0 -chrXIII 31700 32015 MC_gene_6868_tx_1 1 - 31700 32015 . 1 316 0 -chrXIII 32846 33811 MC_gene_6869_tx_1 1 - 32846 33811 . 1 966 0 -chrXIII 34101 37818 HC_gene_6511_tx_1 10 + 34101 37818 . 1 3718 0 -chrXIII 34101 37818 HC_gene_6511_tx_2 1 + 34101 37818 . 2 125,3453 0,265 -chrXIII 34101 37818 HC_gene_6511_tx_3 1 + 34101 37818 . 2 3174,387 0,3331 -chrXIII 36414 37818 HC_gene_6511_tx_4 9 + 36414 37818 . 1 1405 0 -chrXIII 36414 37818 HC_gene_6511_tx_5 1 + 36414 37818 . 2 82,596 0,809 -chrXIII 36785 37818 HC_gene_6511_tx_6 10 + 36785 37818 . 1 1034 0 -chrXIII 36785 37818 HC_gene_6511_tx_7 1 + 36785 37818 . 2 197,772 0,262 -chrXIII 36955 37711 LC_gene_6870_tx_1 1 - 36955 37711 . 1 757 0 -chrXIII 37231 37818 HC_gene_6511_tx_8 21 + 37231 37818 . 1 588 0 -chrXIII 37349 37818 HC_gene_6511_tx_9 14 + 37349 37818 . 1 470 0 -chrXIII 38114 38799 HC_gene_6512_tx_1 1 + 38114 38799 . 1 686 0 -chrXIII 38114 39111 HC_gene_6512_tx_2 1 + 38114 39111 . 1 998 0 -chrXIII 38114 39114 HC_gene_6512_tx_3 1 + 38114 39114 . 1 1001 0 -chrXIII 38114 39115 HC_gene_6512_tx_4 1 + 38114 39115 . 1 1002 0 -chrXIII 38114 39961 HC_gene_6512_tx_5 23 + 38114 39961 . 1 1848 0 -chrXIII 40001 40376 HC_gene_6871_tx_1 9 - 40001 40376 . 1 376 0 -chrXIII 40001 40726 HC_gene_6871_tx_2 5 - 40001 40726 . 1 726 0 -chrXIII 40001 41091 HC_gene_6871_tx_4 6 - 40001 41091 . 1 1091 0 -chrXIII 40001 41532 HC_gene_6871_tx_6 2 - 40001 41532 . 1 1532 0 -chrXIII 40001 41866 HC_gene_6871_tx_7 21 - 40001 41866 . 1 1866 0 -chrXIII 40001 41866 HC_gene_6871_tx_8 1 - 40001 41866 . 2 212,1594 0,272 -chrXIII 40130 40376 HC_gene_6871_tx_12 14 - 40130 40376 . 1 247 0 -chrXIII 40130 40726 HC_gene_6871_tx_3 5 - 40130 40726 . 1 597 0 -chrXIII 40130 41091 HC_gene_6871_tx_5 4 - 40130 41091 . 1 962 0 -chrXIII 40130 41532 HC_gene_6871_tx_9 5 - 40130 41532 . 1 1403 0 -chrXIII 40130 41866 HC_gene_6871_tx_10 30 - 40130 41866 . 1 1737 0 -chrXIII 40130 41866 HC_gene_6871_tx_11 1 - 40130 41866 . 2 767,744 0,993 -chrXIII 41971 42812 HC_gene_6872_tx_1 6 - 41971 42812 . 1 842 0 -chrXIII 41971 43595 HC_gene_6872_tx_2 19 - 41971 43595 . 1 1625 0 -chrXIII 41971 43761 HC_gene_6872_tx_3 4 - 41971 43761 . 1 1791 0 -chrXIII 43997 44925 HC_gene_6513_tx_1 62 + 43997 44925 . 1 929 0 -chrXIII 43997 44925 HC_gene_6513_tx_2 1 + 43997 44925 . 2 254,607 0,322 -chrXIII 45038 46041 HC_gene_6514_tx_1 50 + 45038 46041 . 1 1004 0 -chrXIII 45038 46041 HC_gene_6514_tx_2 1 + 45038 46041 . 2 319,492 0,512 -chrXIII 45979 46361 HC_gene_6873_tx_1 4 - 45979 46361 . 1 383 0 -chrXIII 45979 46500 HC_gene_6873_tx_2 16 - 45979 46500 . 1 522 0 -chrXIII 46789 49837 HC_gene_6515_tx_1 8 + 46789 49837 . 1 3049 0 -chrXIII 49589 50225 HC_gene_6874_tx_1 1 - 49589 50225 . 1 637 0 -chrXIII 49589 51005 HC_gene_6874_tx_2 3 - 49589 51005 . 1 1417 0 -chrXIII 49656 51005 HC_gene_6874_tx_3 1 - 49656 51005 . 1 1350 0 -chrXIII 49746 50225 HC_gene_6874_tx_11 51 - 49746 50225 . 1 480 0 -chrXIII 49746 50594 HC_gene_6874_tx_12 41 - 49746 50594 . 1 849 0 -chrXIII 49746 51005 HC_gene_6874_tx_4 127 - 49746 51005 . 1 1260 0 -chrXIII 49746 51005 HC_gene_6874_tx_5 1 - 49746 51005 . 2 556,520 0,740 -chrXIII 49746 51005 HC_gene_6874_tx_6 1 - 49746 51005 . 2 851,326 0,934 -chrXIII 49961 51005 HC_gene_6874_tx_7 1 - 49961 51005 . 1 1045 0 -chrXIII 49963 50594 HC_gene_6874_tx_13 1 - 49963 50594 . 1 632 0 -chrXIII 49963 51005 HC_gene_6874_tx_8 1 - 49963 51005 . 1 1043 0 -chrXIII 49968 51005 HC_gene_6874_tx_9 1 - 49968 51005 . 1 1038 0 -chrXIII 49975 51005 HC_gene_6874_tx_10 1 - 49975 51005 . 1 1031 0 -chrXIII 51567 54551 HC_gene_6516_tx_1 4 + 51567 54551 . 1 2985 0 -chrXIII 51567 54692 HC_gene_6516_tx_2 1 + 51567 54692 . 1 3126 0 -chrXIII 54732 55318 HC_gene_6517_tx_1 101 + 54732 55318 . 1 587 0 -chrXIII 54732 55417 HC_gene_6517_tx_2 1 + 54732 55417 . 1 686 0 -chrXIII 54732 55442 HC_gene_6517_tx_3 1 + 54732 55442 . 1 711 0 -chrXIII 54732 55455 HC_gene_6517_tx_4 1 + 54732 55455 . 1 724 0 -chrXIII 54732 55456 HC_gene_6517_tx_5 1 + 54732 55456 . 1 725 0 -chrXIII 54732 55750 HC_gene_6517_tx_6 2 + 54732 55750 . 1 1019 0 -chrXIII 55012 56166 HC_gene_6875_tx_1 1 - 55012 56166 . 1 1155 0 -chrXIII 55012 56283 HC_gene_6875_tx_2 3 - 55012 56283 . 1 1272 0 -chrXIII 55235 56166 HC_gene_6875_tx_3 3 - 55235 56166 . 1 932 0 -chrXIII 55235 56283 HC_gene_6875_tx_4 28 - 55235 56283 . 1 1049 0 -chrXIII 55235 56283 HC_gene_6875_tx_5 1 - 55235 56283 . 2 455,502 0,547 -chrXIII 56551 57603 HC_gene_6518_tx_1 404 + 56551 57603 . 1 1053 0 -chrXIII 56551 57603 HC_gene_6518_tx_2 1 + 56551 57603 . 2 909,46 0,1007 -chrXIII 56551 57603 HC_gene_6518_tx_3 1 + 56551 57603 . 2 947,66 0,987 -chrXIII 56551 57603 HC_gene_6518_tx_4 1 + 56551 57603 . 2 335,667 0,386 -chrXIII 56551 57603 HC_gene_6518_tx_5 1 + 56551 57603 . 2 884,81 0,972 -chrXIII 56551 57603 HC_gene_6518_tx_6 1 + 56551 57603 . 2 884,56 0,997 -chrXIII 56551 57603 HC_gene_6518_tx_7 1 + 56551 57603 . 2 919,63 0,990 -chrXIII 56551 57603 HC_gene_6518_tx_8 1 + 56551 57603 . 2 730,229 0,824 -chrXIII 56551 57603 HC_gene_6518_tx_9 1 + 56551 57603 . 2 233,506 0,547 -chrXIII 56551 57603 HC_gene_6518_tx_10 1 + 56551 57603 . 2 480,461 0,592 -chrXIII 56551 57603 HC_gene_6518_tx_11 1 + 56551 57603 . 2 165,385 0,668 -chrXIII 56551 57876 HC_gene_6518_tx_13 3 + 56551 57876 . 1 1326 0 -chrXIII 56617 57603 HC_gene_6518_tx_12 1 + 56617 57603 . 2 433,514 0,473 -chrXIII 56911 57603 HC_gene_6518_tx_14 44 + 56911 57603 . 1 693 0 -chrXIII 57044 57603 HC_gene_6518_tx_15 26 + 57044 57603 . 1 560 0 -chrXIII 57118 57603 HC_gene_6518_tx_16 74 + 57118 57603 . 1 486 0 -chrXIII 57118 57876 HC_gene_6518_tx_18 1 + 57118 57876 . 1 759 0 -chrXIII 57202 57603 HC_gene_6518_tx_17 58 + 57202 57603 . 1 402 0 -chrXIII 57746 58117 HC_gene_6876_tx_1 18 - 57746 58117 . 1 372 0 -chrXIII 57746 58342 HC_gene_6876_tx_2 16 - 57746 58342 . 1 597 0 -chrXIII 57746 58719 HC_gene_6876_tx_3 121 - 57746 58719 . 1 974 0 -chrXIII 57746 58719 HC_gene_6876_tx_4 1 - 57746 58719 . 2 83,839 0,135 -chrXIII 57746 58719 HC_gene_6876_tx_5 1 - 57746 58719 . 2 83,731 0,243 -chrXIII 58856 59440 MC_gene_6519_tx_1 1 + 58856 59440 . 1 585 0 -chrXIII 58875 62262 HC_gene_6877_tx_1 1 - 58875 62262 . 1 3388 0 -chrXIII 58876 62262 HC_gene_6877_tx_2 1 - 58876 62262 . 1 3387 0 -chrXIII 58877 62262 HC_gene_6877_tx_3 1 - 58877 62262 . 1 3386 0 -chrXIII 59233 62262 HC_gene_6877_tx_4 1 - 59233 62262 . 1 3030 0 -chrXIII 62373 63453 HC_gene_6878_tx_1 1 - 62373 63453 . 1 1081 0 -chrXIII 62531 63453 HC_gene_6878_tx_2 5 - 62531 63453 . 1 923 0 -chrXIII 64611 67587 HC_gene_6879_tx_1 1 - 64611 67587 . 1 2977 0 -chrXIII 64614 67587 HC_gene_6879_tx_2 1 - 64614 67587 . 1 2974 0 -chrXIII 67992 69688 HC_gene_6880_tx_1 1 - 67992 69688 . 1 1697 0 -chrXIII 68287 69755 HC_gene_6520_tx_1 20 + 68287 69755 . 1 1469 0 -chrXIII 68541 69755 HC_gene_6520_tx_2 1 + 68541 69755 . 1 1215 0 -chrXIII 69661 70077 HC_gene_6881_tx_1 1 - 69661 70077 . 1 417 0 -chrXIII 69661 70079 HC_gene_6881_tx_2 1 - 69661 70079 . 1 419 0 -chrXIII 69661 70085 HC_gene_6881_tx_3 1 - 69661 70085 . 1 425 0 -chrXIII 69661 70086 HC_gene_6881_tx_4 1 - 69661 70086 . 1 426 0 -chrXIII 69661 70094 HC_gene_6881_tx_5 1 - 69661 70094 . 1 434 0 -chrXIII 69661 70096 HC_gene_6881_tx_6 1 - 69661 70096 . 1 436 0 -chrXIII 69661 70103 HC_gene_6881_tx_7 1 - 69661 70103 . 1 443 0 -chrXIII 69661 70107 HC_gene_6881_tx_8 1 - 69661 70107 . 1 447 0 -chrXIII 69661 70108 HC_gene_6881_tx_9 1 - 69661 70108 . 1 448 0 -chrXIII 69661 70111 HC_gene_6881_tx_10 2 - 69661 70111 . 1 451 0 -chrXIII 69661 70113 HC_gene_6881_tx_11 2 - 69661 70113 . 1 453 0 -chrXIII 69661 70122 HC_gene_6881_tx_12 118 - 69661 70122 . 1 462 0 -chrXIII 69661 70125 HC_gene_6881_tx_13 2 - 69661 70125 . 1 465 0 -chrXIII 69661 70129 HC_gene_6881_tx_14 1 - 69661 70129 . 1 469 0 -chrXIII 70233 70556 HC_gene_6521_tx_1 2 + 70233 70556 . 1 324 0 -chrXIII 71756 74036 HC_gene_6522_tx_1 2 + 71756 74036 . 1 2281 0 -chrXIII 72232 74036 HC_gene_6522_tx_2 2 + 72232 74036 . 1 1805 0 -chrXIII 72432 74036 HC_gene_6522_tx_3 7 + 72432 74036 . 1 1605 0 -chrXIII 72853 74036 HC_gene_6522_tx_4 3 + 72853 74036 . 1 1184 0 -chrXIII 72908 74036 HC_gene_6522_tx_5 9 + 72908 74036 . 1 1129 0 -chrXIII 73370 74036 HC_gene_6522_tx_6 9 + 73370 74036 . 1 667 0 -chrXIII 73445 74036 HC_gene_6522_tx_7 7 + 73445 74036 . 1 592 0 -chrXIII 73553 74036 HC_gene_6522_tx_8 23 + 73553 74036 . 1 484 0 -chrXIII 74251 77006 HC_gene_6882_tx_1 1 - 74251 77006 . 2 1499,1130 0,1626 -chrXIII 74251 77006 HC_gene_6882_tx_2 8 - 74251 77006 . 1 2756 0 -chrXIII 74251 77006 HC_gene_6882_tx_3 1 - 74251 77006 . 2 1938,409 0,2347 -chrXIII 77246 77882 HC_gene_6523_tx_1 103 + 77246 77882 . 1 637 0 -chrXIII 77246 77882 HC_gene_6523_tx_2 1 + 77246 77882 . 2 496,58 0,579 -chrXIII 77246 78259 HC_gene_6523_tx_3 1 + 77246 78259 . 1 1014 0 -chrXIII 77246 78337 HC_gene_6523_tx_4 1 + 77246 78337 . 1 1092 0 -chrXIII 77449 77882 HC_gene_6523_tx_7 9 + 77449 77882 . 1 434 0 -chrXIII 77449 78337 HC_gene_6523_tx_5 2 + 77449 78337 . 1 889 0 -chrXIII 77619 77882 HC_gene_6523_tx_8 4 + 77619 77882 . 1 264 0 -chrXIII 77619 78337 HC_gene_6523_tx_6 1 + 77619 78337 . 1 719 0 -chrXIII 77780 78166 MC_gene_6883_tx_1 1 - 77780 78166 . 1 387 0 -chrXIII 78238 78831 HC_gene_6884_tx_1 7 - 78238 78831 . 1 594 0 -chrXIII 78238 79704 HC_gene_6884_tx_2 51 - 78238 79704 . 1 1467 0 -chrXIII 79884 81523 HC_gene_6524_tx_1 10 + 79884 81523 . 1 1640 0 -chrXIII 79884 81601 HC_gene_6524_tx_2 23 + 79884 81601 . 1 1718 0 -chrXIII 79884 81601 HC_gene_6524_tx_3 1 + 79884 81601 . 2 1015,652 0,1066 -chrXIII 79884 81601 HC_gene_6524_tx_4 1 + 79884 81601 . 2 958,683 0,1035 -chrXIII 79884 81601 HC_gene_6524_tx_5 1 + 79884 81601 . 2 1553,44 0,1674 -chrXIII 79884 81808 HC_gene_6524_tx_6 2 + 79884 81808 . 1 1925 0 -chrXIII 80903 82140 HC_gene_6885_tx_1 1 - 80903 82140 . 1 1238 0 -chrXIII 82260 82945 HC_gene_6525_tx_1 2 + 82260 82945 . 2 31,572 0,114 -chrXIII 82260 82945 HC_gene_6525_tx_2 41 + 82260 82945 . 1 686 0 -chrXIII 82504 82839 LC_gene_6886_tx_1 1 - 82504 82839 . 1 336 0 -chrXIII 82540 82945 HC_gene_6525_tx_3 24 + 82540 82945 . 1 406 0 -chrXIII 83065 85947 HC_gene_6526_tx_1 1 + 83065 85947 . 2 92,2700 0,183 -chrXIII 83065 85947 HC_gene_6526_tx_2 18 + 83065 85947 . 1 2883 0 -chrXIII 83065 85947 HC_gene_6526_tx_3 1 + 83065 85947 . 2 62,2679 0,204 -chrXIII 83065 85947 HC_gene_6526_tx_4 1 + 83065 85947 . 2 907,1933 0,950 -chrXIII 83065 85947 HC_gene_6526_tx_5 1 + 83065 85947 . 2 1867,928 0,1955 -chrXIII 83315 85947 HC_gene_6526_tx_6 4 + 83315 85947 . 1 2633 0 -chrXIII 84011 85947 HC_gene_6526_tx_7 1 + 84011 85947 . 2 66,1343 0,594 -chrXIII 84011 85947 HC_gene_6526_tx_8 8 + 84011 85947 . 1 1937 0 -chrXIII 84107 85947 HC_gene_6526_tx_9 4 + 84107 85947 . 1 1841 0 -chrXIII 84395 85947 HC_gene_6526_tx_10 11 + 84395 85947 . 1 1553 0 -chrXIII 84395 85947 HC_gene_6526_tx_11 1 + 84395 85947 . 2 178,1321 0,232 -chrXIII 84395 85947 HC_gene_6526_tx_12 1 + 84395 85947 . 2 725,779 0,774 -chrXIII 84605 85947 HC_gene_6526_tx_13 12 + 84605 85947 . 1 1343 0 -chrXIII 84605 85947 HC_gene_6526_tx_14 1 + 84605 85947 . 2 720,559 0,784 -chrXIII 84707 85947 HC_gene_6526_tx_15 9 + 84707 85947 . 1 1241 0 -chrXIII 84707 85947 HC_gene_6526_tx_16 1 + 84707 85947 . 2 484,678 0,563 -chrXIII 84820 85947 HC_gene_6526_tx_17 16 + 84820 85947 . 1 1128 0 -chrXIII 84820 85947 HC_gene_6526_tx_18 1 + 84820 85947 . 2 37,652 0,476 -chrXIII 85003 85947 HC_gene_6526_tx_19 16 + 85003 85947 . 1 945 0 -chrXIII 85003 85947 HC_gene_6526_tx_20 1 + 85003 85947 . 2 152,728 0,217 -chrXIII 85258 85947 HC_gene_6526_tx_21 21 + 85258 85947 . 1 690 0 -chrXIII 85530 85947 HC_gene_6526_tx_22 31 + 85530 85947 . 1 418 0 -chrXIII 85886 86230 HC_gene_6887_tx_1 40 - 85886 86230 . 1 345 0 -chrXIII 85886 86308 HC_gene_6887_tx_2 23 - 85886 86308 . 1 423 0 -chrXIII 85886 86503 HC_gene_6887_tx_3 36 - 85886 86503 . 1 618 0 -chrXIII 85886 86761 HC_gene_6887_tx_4 264 - 85886 86761 . 1 876 0 -chrXIII 85886 86761 HC_gene_6887_tx_5 1 - 85886 86761 . 2 509,241 0,635 -chrXIII 85886 86761 HC_gene_6887_tx_6 1 - 85886 86761 . 2 309,486 0,390 -chrXIII 85886 86761 HC_gene_6887_tx_7 1 - 85886 86761 . 2 44,305 0,571 -chrXIII 85886 86761 HC_gene_6887_tx_8 1 - 85886 86761 . 2 299,335 0,541 -chrXIII 86988 91045 MC_gene_6888_tx_1 1 - 86988 91045 . 2 2209,1776 0,2282 -chrXIII 87024 90750 MC_gene_6888_tx_2 1 - 87024 90750 . 1 3727 0 -chrXIII 87670 90053 MC_gene_6888_tx_3 1 - 87670 90053 . 1 2384 0 -chrXIII 92213 93365 HC_gene_6527_tx_1 1 + 92213 93365 . 1 1153 0 -chrXIII 92213 94329 HC_gene_6527_tx_2 19 + 92213 94329 . 1 2117 0 -chrXIII 92213 94329 HC_gene_6527_tx_3 1 + 92213 94329 . 2 1256,793 0,1324 -chrXIII 92697 94016 LC_gene_6889_tx_1 1 - 92697 94016 . 1 1320 0 -chrXIII 93477 94329 HC_gene_6527_tx_4 5 + 93477 94329 . 1 853 0 -chrXIII 94332 95380 HC_gene_6890_tx_1 9 - 94332 95380 . 1 1049 0 -chrXIII 94332 95475 HC_gene_6890_tx_2 1 - 94332 95475 . 1 1144 0 -chrXIII 94414 95802 HC_gene_6528_tx_1 1 + 94414 95802 . 1 1389 0 -chrXIII 95672 96404 HC_gene_6891_tx_1 15 - 95672 96404 . 1 733 0 -chrXIII 95672 97522 HC_gene_6891_tx_2 69 - 95672 97522 . 1 1851 0 -chrXIII 95672 97522 HC_gene_6891_tx_3 1 - 95672 97522 . 2 973,754 0,1097 -chrXIII 97669 97876 HC_gene_6529_tx_1 2 + 97669 97876 . 1 208 0 -chrXIII 97766 98320 HC_gene_6892_tx_1 15 - 97766 98320 . 1 555 0 -chrXIII 97766 98781 HC_gene_6892_tx_3 19 - 97766 98781 . 1 1016 0 -chrXIII 97766 98992 HC_gene_6892_tx_4 6 - 97766 98992 . 1 1227 0 -chrXIII 97766 99139 HC_gene_6892_tx_5 9 - 97766 99139 . 1 1374 0 -chrXIII 97766 99139 HC_gene_6892_tx_6 1 - 97766 99139 . 2 825,262 0,1112 -chrXIII 97766 99139 HC_gene_6892_tx_7 1 - 97766 99139 . 2 792,141 0,1233 -chrXIII 97766 99433 HC_gene_6892_tx_8 1 - 97766 99433 . 3 708,677,58 0,817,1610 -chrXIII 97766 99433 HC_gene_6892_tx_9 83 - 97766 99433 . 2 1494,58 0,1610 -chrXIII 97766 99433 HC_gene_6892_tx_10 1 - 97766 99433 . 1 1668 0 -chrXIII 97766 99433 HC_gene_6892_tx_11 1 - 97766 99433 . 2 1485,58 0,1610 -chrXIII 97862 98320 HC_gene_6892_tx_2 4 - 97862 98320 . 1 459 0 -chrXIII 97862 98781 HC_gene_6892_tx_12 1 - 97862 98781 . 1 920 0 -chrXIII 97862 98992 HC_gene_6892_tx_13 3 - 97862 98992 . 1 1131 0 -chrXIII 97862 99139 HC_gene_6892_tx_14 3 - 97862 99139 . 1 1278 0 -chrXIII 97862 99139 HC_gene_6892_tx_15 1 - 97862 99139 . 2 875,189 0,1089 -chrXIII 97862 99433 HC_gene_6892_tx_16 26 - 97862 99433 . 2 1398,58 0,1514 -chrXIII 97862 99433 HC_gene_6892_tx_17 3 - 97862 99433 . 1 1572 0 -chrXIII 97862 99433 HC_gene_6892_tx_18 1 - 97862 99433 . 2 1398,49 0,1523 -chrXIII 99211 99655 MC_gene_6530_tx_1 1 + 99211 99655 . 1 445 0 -chrXIII 99584 100678 MC_gene_6893_tx_1 1 - 99584 100678 . 1 1095 0 -chrXIII 99675 101277 HC_gene_6531_tx_1 5 + 99675 101277 . 1 1603 0 -chrXIII 101806 103954 HC_gene_6532_tx_1 27 + 101806 103954 . 1 2149 0 -chrXIII 101806 103954 HC_gene_6532_tx_2 2 + 101806 103954 . 2 1199,883 0,1266 -chrXIII 101806 103954 HC_gene_6532_tx_3 1 + 101806 103954 . 2 1292,775 0,1374 -chrXIII 101806 103954 HC_gene_6532_tx_4 1 + 101806 103954 . 2 1066,883 0,1266 -chrXIII 101806 103954 HC_gene_6532_tx_5 1 + 101806 103954 . 2 1286,744 0,1405 -chrXIII 101806 103954 HC_gene_6532_tx_6 1 + 101806 103954 . 2 283,1702 0,447 -chrXIII 103821 104207 HC_gene_6894_tx_1 567 - 103821 104207 . 1 387 0 -chrXIII 103880 104207 HC_gene_6894_tx_2 103 - 103880 104207 . 1 328 0 -chrXIII 103964 104460 MC_gene_6533_tx_1 1 + 103964 104460 . 1 497 0 -chrXIII 104671 108617 HC_gene_6534_tx_1 5 + 104671 108617 . 1 3947 0 -chrXIII 106237 106872 HC_gene_6534_tx_2 1 + 106237 106872 . 1 636 0 -chrXIII 106672 108617 HC_gene_6534_tx_3 1 + 106672 108617 . 1 1946 0 -chrXIII 108690 110182 HC_gene_6535_tx_1 23 + 108690 110182 . 1 1493 0 -chrXIII 108690 110182 HC_gene_6535_tx_2 1 + 108690 110182 . 2 434,987 0,506 -chrXIII 110217 110985 HC_gene_6536_tx_1 1 + 110217 110985 . 1 769 0 -chrXIII 110223 110985 HC_gene_6536_tx_2 1 + 110223 110985 . 1 763 0 -chrXIII 110232 110982 HC_gene_6536_tx_3 1 + 110232 110982 . 1 751 0 -chrXIII 110235 110985 HC_gene_6536_tx_4 1 + 110235 110985 . 1 751 0 -chrXIII 110237 110903 HC_gene_6536_tx_5 12 + 110237 110903 . 1 667 0 -chrXIII 110237 110904 HC_gene_6536_tx_6 4 + 110237 110904 . 1 668 0 -chrXIII 110237 110905 HC_gene_6536_tx_7 3 + 110237 110905 . 1 669 0 -chrXIII 110237 110906 HC_gene_6536_tx_8 2 + 110237 110906 . 1 670 0 -chrXIII 110237 110908 HC_gene_6536_tx_9 1 + 110237 110908 . 1 672 0 -chrXIII 110237 110910 HC_gene_6536_tx_10 4 + 110237 110910 . 1 674 0 -chrXIII 110237 110917 HC_gene_6536_tx_11 1 + 110237 110917 . 1 681 0 -chrXIII 110237 110919 HC_gene_6536_tx_12 1 + 110237 110919 . 1 683 0 -chrXIII 110237 110920 HC_gene_6536_tx_13 1 + 110237 110920 . 1 684 0 -chrXIII 110237 110923 HC_gene_6536_tx_14 3 + 110237 110923 . 1 687 0 -chrXIII 110237 110924 HC_gene_6536_tx_15 2 + 110237 110924 . 1 688 0 -chrXIII 110237 110925 HC_gene_6536_tx_16 1 + 110237 110925 . 1 689 0 -chrXIII 110237 110927 HC_gene_6536_tx_17 6 + 110237 110927 . 1 691 0 -chrXIII 110237 110928 HC_gene_6536_tx_18 1 + 110237 110928 . 1 692 0 -chrXIII 110237 110929 HC_gene_6536_tx_19 1 + 110237 110929 . 1 693 0 -chrXIII 110237 110930 HC_gene_6536_tx_20 1 + 110237 110930 . 1 694 0 -chrXIII 110237 110933 HC_gene_6536_tx_21 1 + 110237 110933 . 1 697 0 -chrXIII 110237 110936 HC_gene_6536_tx_22 7 + 110237 110936 . 1 700 0 -chrXIII 110237 110937 HC_gene_6536_tx_23 4 + 110237 110937 . 1 701 0 -chrXIII 110237 110938 HC_gene_6536_tx_24 2 + 110237 110938 . 1 702 0 -chrXIII 110237 110939 HC_gene_6536_tx_25 10 + 110237 110939 . 1 703 0 -chrXIII 110237 110940 HC_gene_6536_tx_26 3 + 110237 110940 . 1 704 0 -chrXIII 110237 110942 HC_gene_6536_tx_27 1 + 110237 110942 . 1 706 0 -chrXIII 110237 110943 HC_gene_6536_tx_28 1 + 110237 110943 . 1 707 0 -chrXIII 110237 110946 HC_gene_6536_tx_29 2 + 110237 110946 . 1 710 0 -chrXIII 110237 110950 HC_gene_6536_tx_30 3 + 110237 110950 . 1 714 0 -chrXIII 110237 110951 HC_gene_6536_tx_31 4 + 110237 110951 . 1 715 0 -chrXIII 110237 110954 HC_gene_6536_tx_32 4 + 110237 110954 . 1 718 0 -chrXIII 110237 110955 HC_gene_6536_tx_33 3 + 110237 110955 . 1 719 0 -chrXIII 110237 110956 HC_gene_6536_tx_34 1 + 110237 110956 . 1 720 0 -chrXIII 110237 110963 HC_gene_6536_tx_35 1 + 110237 110963 . 1 727 0 -chrXIII 110237 110967 HC_gene_6536_tx_36 4 + 110237 110967 . 1 731 0 -chrXIII 110237 110968 HC_gene_6536_tx_37 6 + 110237 110968 . 1 732 0 -chrXIII 110237 110969 HC_gene_6536_tx_38 1 + 110237 110969 . 1 733 0 -chrXIII 110237 110970 HC_gene_6536_tx_39 3 + 110237 110970 . 1 734 0 -chrXIII 110237 110971 HC_gene_6536_tx_40 2 + 110237 110971 . 1 735 0 -chrXIII 110237 110973 HC_gene_6536_tx_41 2 + 110237 110973 . 1 737 0 -chrXIII 110237 110974 HC_gene_6536_tx_42 1 + 110237 110974 . 1 738 0 -chrXIII 110237 111702 HC_gene_6536_tx_58 5 + 110237 111702 . 1 1466 0 -chrXIII 110248 110983 HC_gene_6536_tx_43 1 + 110248 110983 . 1 736 0 -chrXIII 110252 110982 HC_gene_6536_tx_44 1 + 110252 110982 . 1 731 0 -chrXIII 110382 110903 HC_gene_6536_tx_45 1 + 110382 110903 . 1 522 0 -chrXIII 110382 110906 HC_gene_6536_tx_46 2 + 110382 110906 . 1 525 0 -chrXIII 110382 110925 HC_gene_6536_tx_47 1 + 110382 110925 . 1 544 0 -chrXIII 110382 110927 HC_gene_6536_tx_48 1 + 110382 110927 . 1 546 0 -chrXIII 110382 110939 HC_gene_6536_tx_49 4 + 110382 110939 . 1 558 0 -chrXIII 110382 110950 HC_gene_6536_tx_50 1 + 110382 110950 . 1 569 0 -chrXIII 110382 110954 HC_gene_6536_tx_51 2 + 110382 110954 . 1 573 0 -chrXIII 110382 110966 HC_gene_6536_tx_52 1 + 110382 110966 . 1 585 0 -chrXIII 110382 110968 HC_gene_6536_tx_53 3 + 110382 110968 . 1 587 0 -chrXIII 110382 110970 HC_gene_6536_tx_54 1 + 110382 110970 . 1 589 0 -chrXIII 110382 110971 HC_gene_6536_tx_55 1 + 110382 110971 . 1 590 0 -chrXIII 110382 110996 HC_gene_6536_tx_56 1 + 110382 110996 . 1 615 0 -chrXIII 110382 111702 HC_gene_6536_tx_59 1 + 110382 111702 . 1 1321 0 -chrXIII 110415 110988 HC_gene_6536_tx_57 1 + 110415 110988 . 1 574 0 -chrXIII 110417 110851 MC_gene_6895_tx_1 1 - 110417 110851 . 1 435 0 -chrXIII 110572 110903 HC_gene_6536_tx_60 3 + 110572 110903 . 1 332 0 -chrXIII 110572 110904 HC_gene_6536_tx_61 1 + 110572 110904 . 1 333 0 -chrXIII 110572 110927 HC_gene_6536_tx_62 1 + 110572 110927 . 1 356 0 -chrXIII 110572 110933 HC_gene_6536_tx_63 1 + 110572 110933 . 1 362 0 -chrXIII 110572 110936 HC_gene_6536_tx_64 1 + 110572 110936 . 1 365 0 -chrXIII 110572 110938 HC_gene_6536_tx_65 2 + 110572 110938 . 1 367 0 -chrXIII 110572 110939 HC_gene_6536_tx_66 2 + 110572 110939 . 1 368 0 -chrXIII 110572 110956 HC_gene_6536_tx_67 2 + 110572 110956 . 1 385 0 -chrXIII 110572 110966 HC_gene_6536_tx_68 1 + 110572 110966 . 1 395 0 -chrXIII 110572 110967 HC_gene_6536_tx_69 1 + 110572 110967 . 1 396 0 -chrXIII 110572 110968 HC_gene_6536_tx_70 4 + 110572 110968 . 1 397 0 -chrXIII 110976 111702 HC_gene_6536_tx_71 456 + 110976 111702 . 1 727 0 -chrXIII 110976 111702 HC_gene_6536_tx_72 1 + 110976 111702 . 2 161,515 0,212 -chrXIII 110976 111825 HC_gene_6536_tx_73 8 + 110976 111825 . 1 850 0 -chrXIII 110976 112473 HC_gene_6536_tx_75 2 + 110976 112473 . 1 1498 0 -chrXIII 110999 111825 HC_gene_6536_tx_74 1 + 110999 111825 . 1 827 0 -chrXIII 111278 111702 HC_gene_6536_tx_76 39 + 111278 111702 . 1 425 0 -chrXIII 111278 111825 HC_gene_6536_tx_78 1 + 111278 111825 . 1 548 0 -chrXIII 111340 111702 HC_gene_6536_tx_77 19 + 111340 111702 . 1 363 0 -chrXIII 111340 111825 HC_gene_6536_tx_79 2 + 111340 111825 . 1 486 0 -chrXIII 111340 112473 HC_gene_6536_tx_80 2 + 111340 112473 . 1 1134 0 -chrXIII 111859 112473 HC_gene_6536_tx_81 123 + 111859 112473 . 1 615 0 -chrXIII 112041 112473 HC_gene_6536_tx_82 15 + 112041 112473 . 1 433 0 -chrXIII 112283 115364 HC_gene_6896_tx_1 1 - 112283 115364 . 1 3082 0 -chrXIII 112355 115364 HC_gene_6896_tx_2 3 - 112355 115364 . 1 3010 0 -chrXIII 115441 115731 MC_gene_6537_tx_1 1 + 115441 115731 . 1 291 0 -chrXIII 115587 118976 HC_gene_6897_tx_1 16 - 115587 118976 . 1 3390 0 -chrXIII 115587 118976 HC_gene_6897_tx_2 1 - 115587 118976 . 2 2446,879 0,2511 -chrXIII 115587 118976 HC_gene_6897_tx_3 1 - 115587 118976 . 2 1045,2245 0,1145 -chrXIII 115587 119118 HC_gene_6897_tx_4 2 - 115587 119118 . 1 3532 0 -chrXIII 115587 119118 HC_gene_6897_tx_5 1 - 115587 119118 . 2 2601,453 0,3079 -chrXIII 116669 118881 LC_gene_6538_tx_1 1 + 116669 118881 . 1 2213 0 -chrXIII 117021 118976 HC_gene_6897_tx_6 1 - 117021 118976 . 1 1956 0 -chrXIII 118777 119118 HC_gene_6897_tx_7 3 - 118777 119118 . 1 342 0 -chrXIII 119544 120018 HC_gene_6539_tx_1 4 + 119544 120018 . 1 475 0 -chrXIII 119544 120134 HC_gene_6539_tx_2 25 + 119544 120134 . 1 591 0 -chrXIII 119990 120813 HC_gene_6898_tx_1 153 - 119990 120813 . 1 824 0 -chrXIII 119990 121067 HC_gene_6898_tx_2 80 - 119990 121067 . 1 1078 0 -chrXIII 119990 121067 HC_gene_6898_tx_3 1 - 119990 121067 . 2 495,488 0,590 -chrXIII 119990 121252 HC_gene_6898_tx_4 15 - 119990 121252 . 1 1263 0 -chrXIII 119990 121252 HC_gene_6898_tx_5 1 - 119990 121252 . 2 403,275 0,988 -chrXIII 119990 121252 HC_gene_6898_tx_6 1 - 119990 121252 . 2 755,403 0,860 -chrXIII 119990 121351 HC_gene_6898_tx_7 289 - 119990 121351 . 1 1362 0 -chrXIII 119990 121351 HC_gene_6898_tx_8 1 - 119990 121351 . 2 580,709 0,653 -chrXIII 119990 121351 HC_gene_6898_tx_9 1 - 119990 121351 . 2 683,616 0,746 -chrXIII 119990 121351 HC_gene_6898_tx_10 1 - 119990 121351 . 2 1069,238 0,1124 -chrXIII 119990 121351 HC_gene_6898_tx_11 2 - 119990 121351 . 2 410,877 0,485 -chrXIII 119990 121351 HC_gene_6898_tx_12 1 - 119990 121351 . 2 410,893 0,469 -chrXIII 119990 121351 HC_gene_6898_tx_13 1 - 119990 121351 . 2 723,568 0,794 -chrXIII 119990 121351 HC_gene_6898_tx_14 1 - 119990 121351 . 2 469,575 0,787 -chrXIII 119990 121351 HC_gene_6898_tx_15 1 - 119990 121351 . 2 711,590 0,772 -chrXIII 119990 121351 HC_gene_6898_tx_16 1 - 119990 121351 . 2 821,337 0,1025 -chrXIII 119990 121351 HC_gene_6898_tx_17 1 - 119990 121351 . 2 555,740 0,622 -chrXIII 119990 121351 HC_gene_6898_tx_18 1 - 119990 121351 . 2 278,918 0,444 -chrXIII 119990 121351 HC_gene_6898_tx_19 1 - 119990 121351 . 2 1062,232 0,1130 -chrXIII 119990 121351 HC_gene_6898_tx_20 1 - 119990 121351 . 2 52,1259 0,103 -chrXIII 119990 121351 HC_gene_6898_tx_21 1 - 119990 121351 . 2 902,127 0,1235 -chrXIII 119990 121351 HC_gene_6898_tx_22 1 - 119990 121351 . 2 832,325 0,1037 -chrXIII 119990 121351 HC_gene_6898_tx_23 1 - 119990 121351 . 2 122,494 0,868 -chrXIII 121326 123014 HC_gene_6899_tx_1 2 - 121326 123014 . 1 1689 0 -chrXIII 121582 123210 HC_gene_6540_tx_1 2 + 121582 123210 . 1 1629 0 -chrXIII 121749 123014 HC_gene_6899_tx_2 1 - 121749 123014 . 1 1266 0 -chrXIII 123149 123606 HC_gene_6900_tx_1 3543 - 123149 123606 . 1 458 0 -chrXIII 123149 124190 HC_gene_6900_tx_2 225 - 123149 124190 . 2 594,33 0,1009 -chrXIII 123149 124190 HC_gene_6900_tx_3 42 - 123149 124190 . 1 1042 0 -chrXIII 124583 125150 HC_gene_6901_tx_1 21 - 124583 125150 . 1 568 0 -chrXIII 124583 125464 HC_gene_6901_tx_2 26 - 124583 125464 . 1 882 0 -chrXIII 124583 125581 HC_gene_6901_tx_3 9 - 124583 125581 . 1 999 0 -chrXIII 124583 125724 HC_gene_6901_tx_4 23 - 124583 125724 . 1 1142 0 -chrXIII 124583 126004 HC_gene_6901_tx_5 7 - 124583 126004 . 1 1422 0 -chrXIII 124583 126550 HC_gene_6901_tx_6 16 - 124583 126550 . 1 1968 0 -chrXIII 124583 126550 HC_gene_6901_tx_7 1 - 124583 126550 . 2 562,1318 0,650 -chrXIII 124583 126754 HC_gene_6901_tx_8 4 - 124583 126754 . 1 2172 0 -chrXIII 124583 126915 HC_gene_6901_tx_9 7 - 124583 126915 . 1 2333 0 -chrXIII 124583 127616 HC_gene_6901_tx_10 4 - 124583 127616 . 1 3034 0 -chrXIII 124583 127616 HC_gene_6901_tx_11 1 - 124583 127616 . 2 1549,1191 0,1843 -chrXIII 124583 127973 HC_gene_6901_tx_12 3 - 124583 127973 . 1 3391 0 -chrXIII 124583 129538 HC_gene_6901_tx_13 6 - 124583 129538 . 1 4956 0 -chrXIII 124583 129538 HC_gene_6901_tx_14 1 - 124583 129538 . 2 3573,595 0,4361 -chrXIII 127802 129717 MC_gene_6541_tx_1 1 + 127802 129717 . 1 1916 0 -chrXIII 128426 129846 MC_gene_6542_tx_1 1 + 128426 129846 . 1 1421 0 -chrXIII 129461 130568 HC_gene_6902_tx_1 1 - 129461 130568 . 1 1108 0 -chrXIII 129461 131649 HC_gene_6902_tx_2 1 - 129461 131649 . 2 1360,644 0,1545 -chrXIII 129461 131649 HC_gene_6902_tx_3 1 - 129461 131649 . 1 2189 0 -chrXIII 129702 130423 HC_gene_6902_tx_10 18 - 129702 130423 . 1 722 0 -chrXIII 129702 130568 HC_gene_6902_tx_11 1 - 129702 130568 . 1 867 0 -chrXIII 129702 131266 HC_gene_6902_tx_4 4 - 129702 131266 . 1 1565 0 -chrXIII 129702 131649 HC_gene_6902_tx_5 15 - 129702 131649 . 1 1948 0 -chrXIII 129702 131649 HC_gene_6902_tx_6 1 - 129702 131649 . 2 730,161 0,1787 -chrXIII 129702 131649 HC_gene_6902_tx_7 1 - 129702 131649 . 3 730,653,258 0,796,1690 -chrXIII 129702 131649 HC_gene_6902_tx_8 1 - 129702 131649 . 2 972,189 0,1759 -chrXIII 129702 131649 HC_gene_6902_tx_9 1 - 129702 131649 . 2 1419,181 0,1767 -chrXIII 129798 130399 MC_gene_6543_tx_1 1 + 129798 130399 . 1 602 0 -chrXIII 131664 133259 MC_gene_6903_tx_1 1 - 131664 133259 . 1 1596 0 -chrXIII 132045 133061 MC_gene_6544_tx_1 1 + 132045 133061 . 1 1017 0 -chrXIII 133216 135300 HC_gene_6545_tx_1 1 + 133216 135300 . 2 567,975 0,1110 -chrXIII 133216 135300 HC_gene_6545_tx_2 1 + 133216 135300 . 1 2085 0 -chrXIII 133424 135300 HC_gene_6545_tx_3 57 + 133424 135300 . 1 1877 0 -chrXIII 133692 135300 HC_gene_6545_tx_4 7 + 133692 135300 . 1 1609 0 -chrXIII 133789 135300 HC_gene_6545_tx_5 2 + 133789 135300 . 1 1512 0 -chrXIII 133901 135300 HC_gene_6545_tx_6 9 + 133901 135300 . 1 1400 0 -chrXIII 134610 135300 HC_gene_6545_tx_7 10 + 134610 135300 . 1 691 0 -chrXIII 135436 137231 HC_gene_6546_tx_1 59 + 135436 137231 . 1 1796 0 -chrXIII 135436 137231 HC_gene_6546_tx_2 1 + 135436 137231 . 2 1045,666 0,1130 -chrXIII 135436 137231 HC_gene_6546_tx_3 1 + 135436 137231 . 2 1090,645 0,1151 -chrXIII 135436 137231 HC_gene_6546_tx_4 1 + 135436 137231 . 2 724,264 0,1532 -chrXIII 135720 137231 HC_gene_6546_tx_5 11 + 135720 137231 . 1 1512 0 -chrXIII 135720 137231 HC_gene_6546_tx_6 1 + 135720 137231 . 2 921,499 0,1013 -chrXIII 135720 137231 HC_gene_6546_tx_7 1 + 135720 137231 . 2 924,537 0,975 -chrXIII 135839 137231 HC_gene_6546_tx_8 7 + 135839 137231 . 1 1393 0 -chrXIII 136241 137231 HC_gene_6546_tx_9 16 + 136241 137231 . 1 991 0 -chrXIII 137473 139035 HC_gene_6547_tx_1 10 + 137473 139035 . 1 1563 0 -chrXIII 137473 139449 HC_gene_6547_tx_2 5 + 137473 139449 . 1 1977 0 -chrXIII 138314 140226 HC_gene_6904_tx_1 1 - 138314 140226 . 2 1777,43 0,1870 -chrXIII 139024 139977 HC_gene_6904_tx_2 7 - 139024 139977 . 1 954 0 -chrXIII 139024 140226 HC_gene_6904_tx_3 23 - 139024 140226 . 2 1067,43 0,1160 -chrXIII 139024 140226 HC_gene_6904_tx_4 1 - 139024 140226 . 2 1055,43 0,1160 -chrXIII 139024 140226 HC_gene_6904_tx_5 6 - 139024 140226 . 1 1203 0 -chrXIII 139878 140226 HC_gene_6904_tx_6 1 - 139878 140226 . 1 349 0 -chrXIII 140316 140930 MC_gene_6905_tx_1 1 - 140316 140930 . 1 615 0 -chrXIII 140415 141639 HC_gene_6548_tx_1 5 + 140415 141639 . 1 1225 0 -chrXIII 141528 141954 HC_gene_6906_tx_1 4 - 141528 141954 . 1 427 0 -chrXIII 142115 145044 HC_gene_6549_tx_1 5 + 142115 145044 . 1 2930 0 -chrXIII 142115 145044 HC_gene_6549_tx_2 1 + 142115 145044 . 3 783,1074,880 0,914,2050 -chrXIII 142115 145044 HC_gene_6549_tx_3 1 + 142115 145044 . 2 1940,912 0,2018 -chrXIII 142115 145111 HC_gene_6549_tx_4 2 + 142115 145111 . 1 2997 0 -chrXIII 144830 145938 HC_gene_6907_tx_1 6 - 144830 145938 . 1 1109 0 -chrXIII 144940 145938 HC_gene_6907_tx_2 24 - 144940 145938 . 1 999 0 -chrXIII 144940 145938 HC_gene_6907_tx_3 1 - 144940 145938 . 2 849,66 0,933 -chrXIII 146455 147312 HC_gene_6550_tx_1 3541 + 146455 147312 . 1 858 0 -chrXIII 146936 147312 HC_gene_6550_tx_2 82 + 146936 147312 . 1 377 0 -chrXIII 147005 147312 HC_gene_6550_tx_3 406 + 147005 147312 . 1 308 0 -chrXIII 147434 147835 HC_gene_6908_tx_1 10 - 147434 147835 . 1 402 0 -chrXIII 147434 147941 HC_gene_6908_tx_2 6 - 147434 147941 . 1 508 0 -chrXIII 147434 148027 HC_gene_6908_tx_3 16 - 147434 148027 . 1 594 0 -chrXIII 147434 148027 HC_gene_6908_tx_4 1 - 147434 148027 . 2 484,34 0,560 -chrXIII 147434 148270 HC_gene_6908_tx_5 6 - 147434 148270 . 1 837 0 -chrXIII 147434 148716 HC_gene_6908_tx_6 60 - 147434 148716 . 1 1283 0 -chrXIII 147434 148716 HC_gene_6908_tx_7 1 - 147434 148716 . 2 605,619 0,664 -chrXIII 148863 149107 HC_gene_6909_tx_1 9 - 148863 149107 . 1 245 0 -chrXIII 148863 149800 HC_gene_6909_tx_2 7 - 148863 149800 . 1 938 0 -chrXIII 148863 151667 HC_gene_6909_tx_3 14 - 148863 151667 . 1 2805 0 -chrXIII 151814 153068 HC_gene_6551_tx_1 9 + 151814 153068 . 1 1255 0 -chrXIII 151814 153171 HC_gene_6551_tx_2 17 + 151814 153171 . 1 1358 0 -chrXIII 153088 158313 HC_gene_6910_tx_1 1 - 153088 158313 . 1 5226 0 -chrXIII 153088 158313 HC_gene_6910_tx_2 1 - 153088 158313 . 2 3189,1185 0,4041 -chrXIII 158674 159789 MC_gene_6911_tx_1 1 - 158674 159789 . 1 1116 0 -chrXIII 158710 159100 HC_gene_6552_tx_1 17 + 158710 159100 . 1 391 0 -chrXIII 159349 159831 HC_gene_6553_tx_1 45 + 159349 159831 . 1 483 0 -chrXIII 159349 159963 HC_gene_6553_tx_2 661 + 159349 159963 . 1 615 0 -chrXIII 159484 159963 HC_gene_6553_tx_3 70 + 159484 159963 . 1 480 0 -chrXIII 160124 162055 HC_gene_6554_tx_1 3 + 160124 162055 . 1 1932 0 -chrXIII 160124 162124 HC_gene_6554_tx_2 21 + 160124 162124 . 1 2001 0 -chrXIII 160124 162124 HC_gene_6554_tx_3 1 + 160124 162124 . 2 908,624 0,1377 -chrXIII 160124 162124 HC_gene_6554_tx_4 1 + 160124 162124 . 2 483,1464 0,537 -chrXIII 160124 162124 HC_gene_6554_tx_5 1 + 160124 162124 . 4 440,118,578,626 0,503,700,1375 -chrXIII 160124 162197 HC_gene_6554_tx_6 2 + 160124 162197 . 1 2074 0 -chrXIII 160501 162124 HC_gene_6554_tx_7 2 + 160501 162124 . 1 1624 0 -chrXIII 162080 162592 HC_gene_6912_tx_1 71 - 162080 162592 . 1 513 0 -chrXIII 162080 163185 HC_gene_6912_tx_2 35 - 162080 163185 . 1 1106 0 -chrXIII 162080 163303 HC_gene_6912_tx_3 60 - 162080 163303 . 1 1224 0 -chrXIII 162080 163894 HC_gene_6912_tx_4 14 - 162080 163894 . 2 1229,178 0,1637 -chrXIII 162080 163894 HC_gene_6912_tx_5 5 - 162080 163894 . 2 1231,175 0,1640 -chrXIII 162080 163894 HC_gene_6912_tx_6 1 - 162080 163894 . 3 574,593,175 0,638,1640 -chrXIII 162080 163894 HC_gene_6912_tx_7 3 - 162080 163894 . 1 1815 0 -chrXIII 162080 163894 HC_gene_6912_tx_8 1 - 162080 163894 . 2 1226,178 0,1637 -chrXIII 162080 164068 HC_gene_6912_tx_9 29 - 162080 164068 . 2 1229,352 0,1637 -chrXIII 162080 164068 HC_gene_6912_tx_10 5 - 162080 164068 . 2 1231,349 0,1640 -chrXIII 162080 164068 HC_gene_6912_tx_11 1 - 162080 164068 . 2 1231,334 0,1655 -chrXIII 162080 164068 HC_gene_6912_tx_12 3 - 162080 164068 . 1 1989 0 -chrXIII 162080 164068 HC_gene_6912_tx_13 1 - 162080 164068 . 3 774,198,352 0,1031,1637 -chrXIII 162080 164270 HC_gene_6912_tx_14 264 - 162080 164270 . 2 1229,554 0,1637 -chrXIII 162080 164270 HC_gene_6912_tx_15 40 - 162080 164270 . 1 2191 0 -chrXIII 162080 164270 HC_gene_6912_tx_16 56 - 162080 164270 . 2 1231,551 0,1640 -chrXIII 162080 164270 HC_gene_6912_tx_17 2 - 162080 164270 . 2 1231,536 0,1655 -chrXIII 162080 164270 HC_gene_6912_tx_18 7 - 162080 164270 . 2 1226,554 0,1637 -chrXIII 162080 164270 HC_gene_6912_tx_19 1 - 162080 164270 . 3 553,597,551 0,634,1640 -chrXIII 162080 164270 HC_gene_6912_tx_20 1 - 162080 164270 . 2 1166,606 0,1585 -chrXIII 162080 164270 HC_gene_6912_tx_21 4 - 162080 164270 . 2 1245,536 0,1655 -chrXIII 162080 164270 HC_gene_6912_tx_22 1 - 162080 164270 . 3 779,395,536 0,836,1655 -chrXIII 162080 164270 HC_gene_6912_tx_23 1 - 162080 164270 . 2 1211,554 0,1637 -chrXIII 162080 164270 HC_gene_6912_tx_24 1 - 162080 164270 . 2 1879,194 0,1997 -chrXIII 162080 164270 HC_gene_6912_tx_25 1 - 162080 164270 . 3 482,459,554 0,770,1637 -chrXIII 162080 164270 HC_gene_6912_tx_26 1 - 162080 164270 . 3 754,406,554 0,823,1637 -chrXIII 162080 164270 HC_gene_6912_tx_27 1 - 162080 164270 . 2 1215,353 0,1838 -chrXIII 162080 164270 HC_gene_6912_tx_28 1 - 162080 164270 . 2 1224,551 0,1640 -chrXIII 162080 164270 HC_gene_6912_tx_29 1 - 162080 164270 . 2 1473,554 0,1637 -chrXIII 162080 164270 HC_gene_6912_tx_30 1 - 162080 164270 . 3 1231,230,194 0,1655,1997 -chrXIII 163312 164270 HC_gene_6912_tx_31 1 - 163312 164270 . 1 959 0 -chrXIII 163426 164270 HC_gene_6912_tx_32 3 - 163426 164270 . 1 845 0 -chrXIII 164613 165379 HC_gene_6555_tx_1 23 + 164613 165379 . 1 767 0 -chrXIII 164778 165379 HC_gene_6555_tx_2 150 + 164778 165379 . 1 602 0 -chrXIII 165021 165379 HC_gene_6555_tx_3 32 + 165021 165379 . 1 359 0 -chrXIII 165356 166906 MC_gene_6913_tx_1 1 - 165356 166906 . 1 1551 0 -chrXIII 165538 168133 HC_gene_6556_tx_1 1 + 165538 168133 . 1 2596 0 -chrXIII 167633 168133 HC_gene_6556_tx_2 2 + 167633 168133 . 1 501 0 -chrXIII 168798 169044 MC_gene_6557_tx_1 1 + 168798 169044 . 1 247 0 -chrXIII 168992 169163 HC_gene_6914_tx_1 7 - 168992 169163 . 1 172 0 -chrXIII 168992 169380 HC_gene_6914_tx_2 14 - 168992 169380 . 1 389 0 -chrXIII 168992 169535 HC_gene_6914_tx_3 19 - 168992 169535 . 1 544 0 -chrXIII 168992 169836 HC_gene_6914_tx_4 84 - 168992 169836 . 1 845 0 -chrXIII 170371 171416 HC_gene_6558_tx_1 115 + 170371 171416 . 1 1046 0 -chrXIII 170495 171416 HC_gene_6558_tx_2 12 + 170495 171416 . 1 922 0 -chrXIII 170615 171416 HC_gene_6558_tx_3 30 + 170615 171416 . 1 802 0 -chrXIII 170972 171416 HC_gene_6559_tx_1 13 + 170972 171416 . 1 445 0 -chrXIII 170972 171478 HC_gene_6559_tx_2 1 + 170972 171478 . 1 507 0 -chrXIII 171041 171416 HC_gene_6559_tx_3 15 + 171041 171416 . 1 376 0 -chrXIII 171361 171854 MC_gene_6915_tx_1 1 - 171361 171854 . 1 494 0 -chrXIII 171470 172779 MC_gene_6916_tx_1 1 - 171470 172779 . 1 1310 0 -chrXIII 171528 173045 HC_gene_6560_tx_1 32 + 171528 173045 . 1 1518 0 -chrXIII 171528 173045 HC_gene_6560_tx_2 1 + 171528 173045 . 2 197,1159 0,359 -chrXIII 172593 173045 HC_gene_6560_tx_3 15 + 172593 173045 . 1 453 0 -chrXIII 172990 173300 MC_gene_6917_tx_1 1 - 172990 173300 . 1 311 0 -chrXIII 173118 174193 HC_gene_6561_tx_1 17 + 173118 174193 . 1 1076 0 -chrXIII 173687 174193 HC_gene_6561_tx_2 4 + 173687 174193 . 1 507 0 -chrXIII 174099 174602 HC_gene_6918_tx_1 9 - 174099 174602 . 1 504 0 -chrXIII 176050 178178 HC_gene_6919_tx_1 1 - 176050 178178 . 1 2129 0 -chrXIII 178383 179832 HC_gene_6562_tx_1 125 + 178383 179832 . 1 1450 0 -chrXIII 178383 179832 HC_gene_6562_tx_2 1 + 178383 179832 . 2 1306,92 0,1358 -chrXIII 178383 179832 HC_gene_6562_tx_3 1 + 178383 179832 . 2 1312,74 0,1376 -chrXIII 178383 179832 HC_gene_6562_tx_4 1 + 178383 179832 . 2 1336,51 0,1399 -chrXIII 178383 179832 HC_gene_6562_tx_5 1 + 178383 179832 . 2 1289,116 0,1334 -chrXIII 178383 179832 HC_gene_6562_tx_6 1 + 178383 179832 . 2 1339,68 0,1382 -chrXIII 178383 179832 HC_gene_6562_tx_7 1 + 178383 179832 . 2 1315,92 0,1358 -chrXIII 178383 179832 HC_gene_6562_tx_8 1 + 178383 179832 . 2 1318,68 0,1382 -chrXIII 178383 179832 HC_gene_6562_tx_9 1 + 178383 179832 . 2 258,997 0,453 -chrXIII 178383 179832 HC_gene_6562_tx_10 1 + 178383 179832 . 2 1330,83 0,1367 -chrXIII 178383 179981 HC_gene_6562_tx_11 36 + 178383 179981 . 1 1599 0 -chrXIII 178383 179981 HC_gene_6562_tx_12 1 + 178383 179981 . 2 1312,238 0,1361 -chrXIII 178383 179981 HC_gene_6562_tx_13 1 + 178383 179981 . 3 278,107,995 0,426,604 -chrXIII 178500 179832 HC_gene_6562_tx_14 20 + 178500 179832 . 1 1333 0 -chrXIII 178500 179981 HC_gene_6562_tx_15 9 + 178500 179981 . 1 1482 0 -chrXIII 178639 179981 HC_gene_6562_tx_16 1 + 178639 179981 . 2 47,1246 0,97 -chrXIII 178684 179832 HC_gene_6562_tx_17 18 + 178684 179832 . 1 1149 0 -chrXIII 178684 179832 HC_gene_6562_tx_18 1 + 178684 179832 . 2 260,714 0,435 -chrXIII 178684 179981 HC_gene_6562_tx_19 1 + 178684 179981 . 1 1298 0 -chrXIII 179000 179832 HC_gene_6562_tx_20 19 + 179000 179832 . 1 833 0 -chrXIII 179000 179981 HC_gene_6562_tx_21 1 + 179000 179981 . 2 240,688 0,294 -chrXIII 179000 179981 HC_gene_6562_tx_22 2 + 179000 179981 . 1 982 0 -chrXIII 179119 179832 HC_gene_6562_tx_23 34 + 179119 179832 . 1 714 0 -chrXIII 179119 179832 HC_gene_6562_tx_24 1 + 179119 179832 . 2 585,92 0,622 -chrXIII 179119 179832 HC_gene_6562_tx_25 1 + 179119 179832 . 2 588,89 0,625 -chrXIII 179119 179981 HC_gene_6562_tx_26 7 + 179119 179981 . 1 863 0 -chrXIII 179316 179832 HC_gene_6562_tx_27 27 + 179316 179832 . 1 517 0 -chrXIII 179316 179832 HC_gene_6562_tx_28 1 + 179316 179832 . 2 379,98 0,419 -chrXIII 179316 179981 HC_gene_6562_tx_31 12 + 179316 179981 . 1 666 0 -chrXIII 179381 179832 HC_gene_6562_tx_29 11 + 179381 179832 . 1 452 0 -chrXIII 179381 179832 HC_gene_6562_tx_30 1 + 179381 179832 . 2 314,104 0,348 -chrXIII 179381 179981 HC_gene_6562_tx_32 5 + 179381 179981 . 1 601 0 -chrXIII 179655 181087 LC_gene_6920_tx_1 1 - 179655 181087 . 1 1433 0 -chrXIII 181391 183477 HC_gene_6563_tx_1 5 + 181391 183477 . 1 2087 0 -chrXIII 181391 183596 HC_gene_6563_tx_2 9 + 181391 183596 . 1 2206 0 -chrXIII 181509 183477 HC_gene_6563_tx_3 5 + 181509 183477 . 1 1969 0 -chrXIII 181509 183596 HC_gene_6563_tx_4 2 + 181509 183596 . 1 2088 0 -chrXIII 181509 183596 HC_gene_6563_tx_5 1 + 181509 183596 . 2 889,768 0,1320 -chrXIII 183746 183923 LC_gene_6921_tx_1 1 - 183746 183923 . 1 178 0 -chrXIII 184141 185144 MC_gene_6922_tx_1 1 - 184141 185144 . 1 1004 0 -chrXIII 186581 190107 MC_gene_6564_tx_1 1 + 186581 190107 . 1 3527 0 -chrXIII 190081 191930 HC_gene_6923_tx_1 32 - 190081 191930 . 1 1850 0 -chrXIII 190081 191930 HC_gene_6923_tx_2 1 - 190081 191930 . 2 1211,419 0,1431 -chrXIII 192783 194915 HC_gene_6565_tx_1 2 + 192783 194915 . 1 2133 0 -chrXIII 193474 194689 MC_gene_6924_tx_1 1 - 193474 194689 . 1 1216 0 -chrXIII 193657 194915 HC_gene_6565_tx_2 2 + 193657 194915 . 1 1259 0 -chrXIII 194368 194915 HC_gene_6565_tx_3 5 + 194368 194915 . 1 548 0 -chrXIII 194623 194915 HC_gene_6565_tx_4 3 + 194623 194915 . 1 293 0 -chrXIII 194872 195801 HC_gene_6925_tx_1 35 - 194872 195801 . 1 930 0 -chrXIII 194872 195801 HC_gene_6925_tx_2 1 - 194872 195801 . 2 727,142 0,788 -chrXIII 194872 195953 HC_gene_6925_tx_3 1 - 194872 195953 . 1 1082 0 -chrXIII 202161 202671 HC_gene_6566_tx_1 1 + 202161 202671 . 1 511 0 -chrXIII 202597 204229 HC_gene_6926_tx_1 37 - 202597 204229 . 1 1633 0 -chrXIII 202597 204229 HC_gene_6926_tx_2 1 - 202597 204229 . 2 730,268 0,1365 -chrXIII 202597 204229 HC_gene_6926_tx_3 1 - 202597 204229 . 2 799,434 0,1199 -chrXIII 202597 204229 HC_gene_6926_tx_4 1 - 202597 204229 . 2 318,565 0,1068 -chrXIII 202597 204229 HC_gene_6926_tx_5 1 - 202597 204229 . 2 776,757 0,876 -chrXIII 202597 204229 HC_gene_6926_tx_6 1 - 202597 204229 . 2 648,268 0,1365 -chrXIII 202597 205468 HC_gene_6926_tx_7 3 - 202597 205468 . 1 2872 0 -chrXIII 204446 205303 MC_gene_6567_tx_1 1 + 204446 205303 . 1 858 0 -chrXIII 205621 206339 HC_gene_6568_tx_1 4 + 205621 206339 . 1 719 0 -chrXIII 205621 206339 HC_gene_6568_tx_2 27 + 205621 206339 . 2 477,136 0,583 -chrXIII 205621 206441 HC_gene_6568_tx_3 6 + 205621 206441 . 2 477,238 0,583 -chrXIII 205621 206558 HC_gene_6568_tx_4 14 + 205621 206558 . 2 477,355 0,583 -chrXIII 205621 206558 HC_gene_6568_tx_5 1 + 205621 206558 . 1 938 0 -chrXIII 205621 206706 HC_gene_6568_tx_6 1 + 205621 206706 . 1 1086 0 -chrXIII 205621 206706 HC_gene_6568_tx_7 1 + 205621 206706 . 2 477,503 0,583 -chrXIII 206154 208520 HC_gene_6927_tx_1 1 - 206154 208520 . 1 2367 0 -chrXIII 206154 209035 HC_gene_6927_tx_2 3 - 206154 209035 . 1 2882 0 -chrXIII 206260 208190 HC_gene_6927_tx_3 1 - 206260 208190 . 1 1931 0 -chrXIII 206260 208520 HC_gene_6927_tx_4 2 - 206260 208520 . 1 2261 0 -chrXIII 206260 208837 HC_gene_6927_tx_5 2 - 206260 208837 . 1 2578 0 -chrXIII 206260 209035 HC_gene_6927_tx_6 13 - 206260 209035 . 1 2776 0 -chrXIII 206260 209035 HC_gene_6927_tx_7 1 - 206260 209035 . 2 1873,461 0,2315 -chrXIII 208833 209196 MC_gene_6569_tx_1 1 + 208833 209196 . 1 364 0 -chrXIII 208845 209035 HC_gene_6927_tx_8 2 - 208845 209035 . 1 191 0 -chrXIII 209450 212327 HC_gene_6570_tx_1 9 + 209450 212327 . 2 1995,757 0,2121 -chrXIII 209450 212327 HC_gene_6570_tx_2 1 + 209450 212327 . 3 1377,530,757 0,1465,2121 -chrXIII 209450 212327 HC_gene_6570_tx_3 1 + 209450 212327 . 1 2878 0 -chrXIII 209450 212327 HC_gene_6570_tx_4 1 + 209450 212327 . 3 1995,609,34 0,2128,2844 -chrXIII 209807 212327 HC_gene_6570_tx_5 1 + 209807 212327 . 1 2521 0 -chrXIII 209807 212327 HC_gene_6570_tx_6 1 + 209807 212327 . 3 984,565,757 0,1073,1764 -chrXIII 212188 213684 HC_gene_6928_tx_1 3 - 212188 213684 . 1 1497 0 -chrXIII 212188 213961 HC_gene_6928_tx_2 12 - 212188 213961 . 1 1774 0 -chrXIII 212188 213961 HC_gene_6928_tx_3 1 - 212188 213961 . 2 758,957 0,817 -chrXIII 212188 213961 HC_gene_6928_tx_4 1 - 212188 213961 . 2 634,1088 0,686 -chrXIII 214150 215326 HC_gene_6571_tx_1 1 + 214150 215326 . 1 1177 0 -chrXIII 214150 216235 HC_gene_6571_tx_2 3 + 214150 216235 . 1 2086 0 -chrXIII 215242 216235 HC_gene_6571_tx_3 2 + 215242 216235 . 1 994 0 -chrXIII 216417 217156 HC_gene_6572_tx_1 135 + 216417 217156 . 1 740 0 -chrXIII 216417 217156 HC_gene_6572_tx_2 1 + 216417 217156 . 2 100,443 0,297 -chrXIII 216417 217156 HC_gene_6572_tx_3 1 + 216417 217156 . 2 77,351 0,389 -chrXIII 216417 217156 HC_gene_6572_tx_4 1 + 216417 217156 . 2 306,356 0,384 -chrXIII 216417 217156 HC_gene_6572_tx_5 1 + 216417 217156 . 2 69,348 0,392 -chrXIII 216417 217156 HC_gene_6572_tx_6 1 + 216417 217156 . 2 85,351 0,389 -chrXIII 216417 217156 HC_gene_6572_tx_7 1 + 216417 217156 . 2 449,214 0,526 -chrXIII 216426 217156 HC_gene_6572_tx_8 1 + 216426 217156 . 2 210,422 0,309 -chrXIII 216547 217156 HC_gene_6572_tx_9 6 + 216547 217156 . 1 610 0 -chrXIII 216634 217156 HC_gene_6572_tx_10 24 + 216634 217156 . 1 523 0 -chrXIII 217424 219853 MC_gene_6929_tx_1 1 - 217424 219853 . 1 2430 0 -chrXIII 219938 220725 MC_gene_6930_tx_1 1 - 219938 220725 . 1 788 0 -chrXIII 220108 220838 HC_gene_6573_tx_1 3105 + 220108 220838 . 1 731 0 -chrXIII 220336 220838 HC_gene_6573_tx_2 256 + 220336 220838 . 1 503 0 -chrXIII 220411 220838 HC_gene_6573_tx_3 184 + 220411 220838 . 1 428 0 -chrXIII 220510 220838 HC_gene_6573_tx_4 370 + 220510 220838 . 1 329 0 -chrXIII 220761 222626 MC_gene_6931_tx_1 1 - 220761 222626 . 1 1866 0 -chrXIII 221223 222631 MC_gene_6932_tx_1 1 - 221223 222631 . 1 1409 0 -chrXIII 221334 222676 HC_gene_6574_tx_1 21 + 221334 222676 . 1 1343 0 -chrXIII 222641 223318 HC_gene_6933_tx_1 1 - 222641 223318 . 1 678 0 -chrXIII 222647 223848 HC_gene_6933_tx_4 1 - 222647 223848 . 2 734,67 0,1135 -chrXIII 222651 223318 HC_gene_6933_tx_2 1 - 222651 223318 . 1 668 0 -chrXIII 222651 223848 HC_gene_6933_tx_5 1 - 222651 223848 . 2 730,67 0,1131 -chrXIII 222657 223848 HC_gene_6933_tx_6 1 - 222657 223848 . 2 724,67 0,1125 -chrXIII 222660 223848 HC_gene_6933_tx_7 1 - 222660 223848 . 2 721,67 0,1122 -chrXIII 222663 223318 HC_gene_6933_tx_3 1 - 222663 223318 . 1 656 0 -chrXIII 222665 223175 HC_gene_6933_tx_54 1 - 222665 223175 . 1 511 0 -chrXIII 222665 223848 HC_gene_6933_tx_8 1 - 222665 223848 . 2 716,67 0,1117 -chrXIII 222668 223848 HC_gene_6933_tx_9 1 - 222668 223848 . 2 713,67 0,1114 -chrXIII 222669 223848 HC_gene_6933_tx_10 1 - 222669 223848 . 2 718,49 0,1131 -chrXIII 222669 223848 HC_gene_6933_tx_11 2 - 222669 223848 . 2 712,67 0,1113 -chrXIII 222669 223848 HC_gene_6933_tx_12 1 - 222669 223848 . 2 651,67 0,1113 -chrXIII 222795 223040 HC_gene_6933_tx_55 169 - 222795 223040 . 1 246 0 -chrXIII 222795 223175 HC_gene_6933_tx_56 201 - 222795 223175 . 1 381 0 -chrXIII 222795 223318 HC_gene_6933_tx_57 435 - 222795 223318 . 1 524 0 -chrXIII 222795 223318 HC_gene_6933_tx_58 1 - 222795 223318 . 2 108,361 0,163 -chrXIII 222795 223848 HC_gene_6933_tx_13 1674 - 222795 223848 . 2 586,67 0,987 -chrXIII 222795 223848 HC_gene_6933_tx_14 1 - 222795 223848 . 2 598,49 0,1005 -chrXIII 222795 223848 HC_gene_6933_tx_15 54 - 222795 223848 . 1 1054 0 -chrXIII 222795 223848 HC_gene_6933_tx_16 94 - 222795 223848 . 2 592,49 0,1005 -chrXIII 222795 223848 HC_gene_6933_tx_17 9 - 222795 223848 . 2 586,59 0,995 -chrXIII 222795 223848 HC_gene_6933_tx_18 9 - 222795 223848 . 2 586,57 0,997 -chrXIII 222795 223848 HC_gene_6933_tx_19 8 - 222795 223848 . 2 586,55 0,999 -chrXIII 222795 223848 HC_gene_6933_tx_20 1 - 222795 223848 . 2 574,52 0,1002 -chrXIII 222795 223848 HC_gene_6933_tx_21 3 - 222795 223848 . 2 586,50 0,1004 -chrXIII 222795 223848 HC_gene_6933_tx_22 3 - 222795 223848 . 2 592,52 0,1002 -chrXIII 222795 223848 HC_gene_6933_tx_23 1 - 222795 223848 . 2 595,67 0,987 -chrXIII 222795 223848 HC_gene_6933_tx_24 1 - 222795 223848 . 2 543,63 0,991 -chrXIII 222795 223848 HC_gene_6933_tx_25 1 - 222795 223848 . 3 366,128,67 0,458,987 -chrXIII 222795 223848 HC_gene_6933_tx_26 1 - 222795 223848 . 2 574,49 0,1005 -chrXIII 222795 223848 HC_gene_6933_tx_27 1 - 222795 223848 . 2 525,67 0,987 -chrXIII 222795 223848 HC_gene_6933_tx_28 6 - 222795 223848 . 2 586,45 0,1009 -chrXIII 222795 223848 HC_gene_6933_tx_29 1 - 222795 223848 . 2 563,67 0,987 -chrXIII 222795 223848 HC_gene_6933_tx_30 1 - 222795 223848 . 2 574,60 0,994 -chrXIII 222795 223848 HC_gene_6933_tx_31 1 - 222795 223848 . 2 563,80 0,974 -chrXIII 222795 223848 HC_gene_6933_tx_32 1 - 222795 223848 . 2 586,56 0,998 -chrXIII 222795 223848 HC_gene_6933_tx_33 1 - 222795 223848 . 3 46,414,67 0,172,987 -chrXIII 222795 223848 HC_gene_6933_tx_34 1 - 222795 223848 . 3 45,481,67 0,105,987 -chrXIII 222795 223848 HC_gene_6933_tx_35 1 - 222795 223848 . 2 574,57 0,997 -chrXIII 222795 223848 HC_gene_6933_tx_36 1 - 222795 223848 . 2 586,80 0,974 -chrXIII 222795 223848 HC_gene_6933_tx_37 4 - 222795 223848 . 2 586,58 0,996 -chrXIII 222795 223848 HC_gene_6933_tx_38 1 - 222795 223848 . 2 574,69 0,985 -chrXIII 222795 223848 HC_gene_6933_tx_39 2 - 222795 223848 . 2 586,52 0,1002 -chrXIII 222795 223848 HC_gene_6933_tx_40 1 - 222795 223848 . 2 586,71 0,983 -chrXIII 222795 223848 HC_gene_6933_tx_41 1 - 222795 223848 . 2 574,61 0,993 -chrXIII 222795 223848 HC_gene_6933_tx_42 1 - 222795 223848 . 2 573,67 0,987 -chrXIII 222795 223848 HC_gene_6933_tx_43 1 - 222795 223848 . 3 86,423,67 0,163,987 -chrXIII 222876 223848 HC_gene_6933_tx_44 1 - 222876 223848 . 2 511,49 0,924 -chrXIII 222876 223848 HC_gene_6933_tx_45 1 - 222876 223848 . 2 505,67 0,906 -chrXIII 222877 223848 HC_gene_6933_tx_46 2 - 222877 223848 . 2 504,67 0,905 -chrXIII 222878 223175 HC_gene_6933_tx_60 1 - 222878 223175 . 1 298 0 -chrXIII 222878 223848 HC_gene_6933_tx_47 1 - 222878 223848 . 2 503,67 0,904 -chrXIII 222879 223848 HC_gene_6933_tx_48 1 - 222879 223848 . 2 502,67 0,903 -chrXIII 222880 223848 HC_gene_6933_tx_49 2 - 222880 223848 . 2 501,67 0,902 -chrXIII 222881 223318 HC_gene_6933_tx_59 1 - 222881 223318 . 1 438 0 -chrXIII 222881 223848 HC_gene_6933_tx_50 1 - 222881 223848 . 2 500,67 0,901 -chrXIII 222935 223848 HC_gene_6933_tx_51 1 - 222935 223848 . 2 446,50 0,864 -chrXIII 222936 223848 HC_gene_6933_tx_52 4 - 222936 223848 . 2 445,67 0,846 -chrXIII 222937 223848 HC_gene_6933_tx_53 1 - 222937 223848 . 2 444,67 0,845 -chrXIII 224298 225408 HC_gene_6934_tx_1 29 - 224298 225408 . 2 942,70 0,1041 -chrXIII 224298 225408 HC_gene_6934_tx_2 7 - 224298 225408 . 1 1111 0 -chrXIII 225870 226760 HC_gene_6575_tx_1 42 + 225870 226760 . 2 22,471 0,420 -chrXIII 225870 226760 HC_gene_6575_tx_2 50 + 225870 226760 . 1 891 0 -chrXIII 226277 226760 HC_gene_6575_tx_3 3385 + 226277 226760 . 1 484 0 -chrXIII 226385 226760 HC_gene_6575_tx_4 240 + 226385 226760 . 1 376 0 -chrXIII 226441 226760 HC_gene_6575_tx_5 110 + 226441 226760 . 1 320 0 -chrXIII 226933 228709 HC_gene_6935_tx_1 18 - 226933 228709 . 1 1777 0 -chrXIII 226933 228709 HC_gene_6935_tx_2 1 - 226933 228709 . 2 752,969 0,808 -chrXIII 226933 228709 HC_gene_6935_tx_3 1 - 226933 228709 . 2 77,1602 0,175 -chrXIII 226933 228709 HC_gene_6935_tx_4 1 - 226933 228709 . 2 767,927 0,850 -chrXIII 226933 228709 HC_gene_6935_tx_5 1 - 226933 228709 . 2 845,861 0,916 -chrXIII 227034 229711 HC_gene_6576_tx_1 4 + 227034 229711 . 1 2678 0 -chrXIII 227606 228709 HC_gene_6935_tx_6 4 - 227606 228709 . 1 1104 0 -chrXIII 227727 228709 HC_gene_6935_tx_7 1 - 227727 228709 . 1 983 0 -chrXIII 228914 229711 HC_gene_6576_tx_2 344 + 228914 229711 . 1 798 0 -chrXIII 229575 230162 HC_gene_6936_tx_1 10 - 229575 230162 . 1 588 0 -chrXIII 229575 230530 HC_gene_6936_tx_2 11 - 229575 230530 . 1 956 0 -chrXIII 229575 230794 HC_gene_6936_tx_3 25 - 229575 230794 . 1 1220 0 -chrXIII 230992 233324 HC_gene_6577_tx_1 9 + 230992 233324 . 1 2333 0 -chrXIII 230992 233324 HC_gene_6577_tx_2 1 + 230992 233324 . 2 1391,636 0,1697 -chrXIII 231048 233226 LC_gene_6937_tx_1 1 - 231048 233226 . 1 2179 0 -chrXIII 231054 233324 HC_gene_6577_tx_3 1 + 231054 233324 . 1 2271 0 -chrXIII 231244 233324 HC_gene_6577_tx_4 1 + 231244 233324 . 1 2081 0 -chrXIII 231858 233324 HC_gene_6577_tx_5 3 + 231858 233324 . 1 1467 0 -chrXIII 233210 233635 HC_gene_6938_tx_1 1 - 233210 233635 . 1 426 0 -chrXIII 233433 234746 HC_gene_6578_tx_1 54 + 233433 234746 . 1 1314 0 -chrXIII 233664 234394 HC_gene_6578_tx_3 1 + 233664 234394 . 1 731 0 -chrXIII 233664 234746 HC_gene_6578_tx_2 6 + 233664 234746 . 1 1083 0 -chrXIII 234642 236084 HC_gene_6939_tx_1 78 - 234642 236084 . 1 1443 0 -chrXIII 234642 236084 HC_gene_6939_tx_2 1 - 234642 236084 . 2 1068,322 0,1121 -chrXIII 236517 238388 HC_gene_6579_tx_1 2 + 236517 238388 . 2 75,1435 0,437 -chrXIII 236517 238388 HC_gene_6579_tx_2 2 + 236517 238388 . 1 1872 0 -chrXIII 236912 238911 MC_gene_6940_tx_1 1 - 236912 238911 . 1 2000 0 -chrXIII 237224 238388 HC_gene_6579_tx_3 1 + 237224 238388 . 1 1165 0 -chrXIII 237766 238388 HC_gene_6579_tx_4 3 + 237766 238388 . 1 623 0 -chrXIII 237766 239061 HC_gene_6579_tx_5 1 + 237766 239061 . 2 695,481 0,815 -chrXIII 238209 238388 HC_gene_6579_tx_6 1 + 238209 238388 . 1 180 0 -chrXIII 238282 238388 HC_gene_6579_tx_7 1 + 238282 238388 . 1 107 0 -chrXIII 238282 239061 HC_gene_6579_tx_8 3 + 238282 239061 . 1 780 0 -chrXIII 238282 239129 HC_gene_6579_tx_9 3 + 238282 239129 . 1 848 0 -chrXIII 238412 239241 HC_gene_6579_tx_10 2 + 238412 239241 . 1 830 0 -chrXIII 238516 239061 HC_gene_6579_tx_11 4 + 238516 239061 . 1 546 0 -chrXIII 239134 240075 HC_gene_6941_tx_1 1 - 239134 240075 . 1 942 0 -chrXIII 239134 241195 HC_gene_6941_tx_3 1 - 239134 241195 . 1 2062 0 -chrXIII 239134 241594 HC_gene_6941_tx_4 1 - 239134 241594 . 1 2461 0 -chrXIII 239286 240075 HC_gene_6941_tx_2 8 - 239286 240075 . 1 790 0 -chrXIII 239286 241195 HC_gene_6941_tx_5 6 - 239286 241195 . 1 1910 0 -chrXIII 239286 241195 HC_gene_6941_tx_6 1 - 239286 241195 . 2 1623,219 0,1691 -chrXIII 239286 241395 HC_gene_6941_tx_7 2 - 239286 241395 . 1 2110 0 -chrXIII 239286 241470 HC_gene_6941_tx_8 6 - 239286 241470 . 1 2185 0 -chrXIII 239286 241594 HC_gene_6941_tx_9 10 - 239286 241594 . 1 2309 0 -chrXIII 239286 241671 HC_gene_6941_tx_10 1 - 239286 241671 . 1 2386 0 -chrXIII 239286 241800 HC_gene_6941_tx_11 22 - 239286 241800 . 1 2515 0 -chrXIII 239286 241800 HC_gene_6941_tx_12 1 - 239286 241800 . 2 1009,492 0,2023 -chrXIII 239286 241800 HC_gene_6941_tx_13 1 - 239286 241800 . 2 555,1840 0,675 -chrXIII 241837 242446 HC_gene_6942_tx_1 3 - 241837 242446 . 1 610 0 -chrXIII 241837 242870 HC_gene_6942_tx_2 8 - 241837 242870 . 1 1034 0 -chrXIII 241837 243060 HC_gene_6942_tx_3 39 - 241837 243060 . 1 1224 0 -chrXIII 241837 243060 HC_gene_6942_tx_4 1 - 241837 243060 . 2 361,808 0,416 -chrXIII 241994 242439 HC_gene_6580_tx_1 2 + 241994 242439 . 1 446 0 -chrXIII 242471 243171 LC_gene_6581_tx_1 1 + 242471 243171 . 1 701 0 -chrXIII 243214 244162 HC_gene_6582_tx_1 1 + 243214 244162 . 1 949 0 -chrXIII 243214 244162 HC_gene_6582_tx_2 1 + 243214 244162 . 2 271,579 0,370 -chrXIII 243214 244162 HC_gene_6582_tx_3 1 + 243214 244162 . 2 765,110 0,839 -chrXIII 243214 244164 HC_gene_6582_tx_4 3 + 243214 244164 . 1 951 0 -chrXIII 243214 244165 HC_gene_6582_tx_5 1 + 243214 244165 . 1 952 0 -chrXIII 243219 244162 HC_gene_6582_tx_6 1 + 243219 244162 . 1 944 0 -chrXIII 243220 244162 HC_gene_6582_tx_7 1 + 243220 244162 . 1 943 0 -chrXIII 243830 244165 HC_gene_6582_tx_8 1 + 243830 244165 . 1 336 0 -chrXIII 244137 246127 HC_gene_6583_tx_1 2 + 244137 246127 . 1 1991 0 -chrXIII 244144 246127 HC_gene_6583_tx_2 4 + 244144 246127 . 1 1984 0 -chrXIII 244144 246956 HC_gene_6584_tx_1 14 + 244144 246956 . 1 2813 0 -chrXIII 244664 246956 HC_gene_6584_tx_2 2 + 244664 246956 . 1 2293 0 -chrXIII 244906 245492 LC_gene_6943_tx_1 1 - 244906 245492 . 1 587 0 -chrXIII 246087 246956 HC_gene_6584_tx_3 471 + 246087 246956 . 1 870 0 -chrXIII 246360 246956 HC_gene_6584_tx_4 42 + 246360 246956 . 1 597 0 -chrXIII 246456 246956 HC_gene_6584_tx_5 85 + 246456 246956 . 1 501 0 -chrXIII 246558 246956 HC_gene_6584_tx_6 25 + 246558 246956 . 1 399 0 -chrXIII 246776 247414 HC_gene_6944_tx_1 63 - 246776 247414 . 1 639 0 -chrXIII 246776 247414 HC_gene_6944_tx_2 1 - 246776 247414 . 2 34,535 0,104 -chrXIII 247638 251131 HC_gene_6585_tx_1 1 + 247638 251131 . 1 3494 0 -chrXIII 247638 251137 HC_gene_6585_tx_2 1 + 247638 251137 . 1 3500 0 -chrXIII 247638 251272 HC_gene_6585_tx_3 1 + 247638 251272 . 1 3635 0 -chrXIII 247806 251119 HC_gene_6585_tx_4 1 + 247806 251119 . 1 3314 0 -chrXIII 247806 251137 HC_gene_6585_tx_5 1 + 247806 251137 . 1 3332 0 -chrXIII 247913 251116 HC_gene_6585_tx_6 1 + 247913 251116 . 1 3204 0 -chrXIII 247913 251119 HC_gene_6585_tx_7 1 + 247913 251119 . 1 3207 0 -chrXIII 247913 251132 HC_gene_6585_tx_8 1 + 247913 251132 . 1 3220 0 -chrXIII 248037 251119 HC_gene_6585_tx_9 1 + 248037 251119 . 1 3083 0 -chrXIII 248617 251119 HC_gene_6585_tx_10 1 + 248617 251119 . 1 2503 0 -chrXIII 248617 251131 HC_gene_6585_tx_11 1 + 248617 251131 . 2 1747,518 0,1997 -chrXIII 249330 251132 HC_gene_6585_tx_12 1 + 249330 251132 . 1 1803 0 -chrXIII 249906 251119 HC_gene_6585_tx_13 2 + 249906 251119 . 1 1214 0 -chrXIII 249906 251121 HC_gene_6585_tx_14 1 + 249906 251121 . 1 1216 0 -chrXIII 249906 251272 HC_gene_6585_tx_15 1 + 249906 251272 . 1 1367 0 -chrXIII 250629 251116 HC_gene_6585_tx_16 2 + 250629 251116 . 1 488 0 -chrXIII 250629 251119 HC_gene_6585_tx_17 4 + 250629 251119 . 1 491 0 -chrXIII 250629 251121 HC_gene_6585_tx_18 1 + 250629 251121 . 1 493 0 -chrXIII 250629 251131 HC_gene_6585_tx_19 2 + 250629 251131 . 1 503 0 -chrXIII 250629 251132 HC_gene_6585_tx_20 1 + 250629 251132 . 1 504 0 -chrXIII 250629 251137 HC_gene_6585_tx_21 2 + 250629 251137 . 1 509 0 -chrXIII 250629 251272 HC_gene_6585_tx_22 2 + 250629 251272 . 1 644 0 -chrXIII 250629 251272 HC_gene_6585_tx_23 1 + 250629 251272 . 2 348,163 0,481 -chrXIII 251013 251559 HC_gene_6945_tx_1 45 - 251013 251559 . 1 547 0 -chrXIII 251110 251463 HC_gene_6945_tx_3 5 - 251110 251463 . 1 354 0 -chrXIII 251110 251559 HC_gene_6945_tx_2 155 - 251110 251559 . 1 450 0 -chrXIII 251712 252155 HC_gene_6946_tx_1 46 - 251712 252155 . 1 444 0 -chrXIII 251712 252339 HC_gene_6946_tx_2 52 - 251712 252339 . 1 628 0 -chrXIII 251712 252632 HC_gene_6946_tx_3 58 - 251712 252632 . 1 921 0 -chrXIII 251712 252632 HC_gene_6946_tx_4 1 - 251712 252632 . 2 689,183 0,738 -chrXIII 251712 252735 HC_gene_6946_tx_5 1 - 251712 252735 . 2 151,809 0,215 -chrXIII 251712 252735 HC_gene_6946_tx_6 33 - 251712 252735 . 1 1024 0 -chrXIII 251712 253025 HC_gene_6946_tx_7 452 - 251712 253025 . 1 1314 0 -chrXIII 251712 253025 HC_gene_6946_tx_8 1 - 251712 253025 . 2 940,336 0,978 -chrXIII 251712 253025 HC_gene_6946_tx_9 1 - 251712 253025 . 2 912,341 0,973 -chrXIII 251712 253025 HC_gene_6946_tx_10 1 - 251712 253025 . 2 338,919 0,395 -chrXIII 251712 253025 HC_gene_6946_tx_11 1 - 251712 253025 . 2 1019,189 0,1125 -chrXIII 251712 253025 HC_gene_6946_tx_12 1 - 251712 253025 . 2 458,783 0,531 -chrXIII 251712 253216 HC_gene_6946_tx_13 5 - 251712 253216 . 1 1505 0 -chrXIII 251752 252662 MC_gene_6586_tx_1 1 + 251752 252662 . 1 911 0 -chrXIII 252992 253216 HC_gene_6946_tx_14 3 - 252992 253216 . 1 225 0 -chrXIII 252992 253238 HC_gene_6946_tx_15 1 - 252992 253238 . 1 247 0 -chrXIII 253073 253216 HC_gene_6946_tx_16 2 - 253073 253216 . 1 144 0 -chrXIII 253134 254683 HC_gene_6587_tx_1 1 + 253134 254683 . 1 1550 0 -chrXIII 253721 254658 HC_gene_6588_tx_1 1 + 253721 254658 . 1 938 0 -chrXIII 253721 254671 HC_gene_6588_tx_2 2 + 253721 254671 . 1 951 0 -chrXIII 253721 254675 HC_gene_6588_tx_3 3 + 253721 254675 . 1 955 0 -chrXIII 253721 254676 HC_gene_6588_tx_4 3 + 253721 254676 . 1 956 0 -chrXIII 253721 254685 HC_gene_6588_tx_5 1 + 253721 254685 . 1 965 0 -chrXIII 253721 254686 HC_gene_6588_tx_6 3 + 253721 254686 . 1 966 0 -chrXIII 253721 254695 HC_gene_6588_tx_7 1 + 253721 254695 . 1 975 0 -chrXIII 253721 254698 HC_gene_6588_tx_8 1 + 253721 254698 . 1 978 0 -chrXIII 253721 254710 HC_gene_6588_tx_9 1 + 253721 254710 . 1 990 0 -chrXIII 253721 254976 HC_gene_6588_tx_16 6 + 253721 254976 . 1 1256 0 -chrXIII 253721 255892 HC_gene_6588_tx_19 1 + 253721 255892 . 2 462,1617 0,555 -chrXIII 253721 255892 HC_gene_6588_tx_20 1 + 253721 255892 . 1 2172 0 -chrXIII 253721 255994 HC_gene_6588_tx_21 23 + 253721 255994 . 1 2274 0 -chrXIII 253721 255994 HC_gene_6588_tx_22 1 + 253721 255994 . 2 72,1306 0,968 -chrXIII 253721 255994 HC_gene_6588_tx_23 1 + 253721 255994 . 2 448,1465 0,809 -chrXIII 253721 255994 HC_gene_6588_tx_24 1 + 253721 255994 . 2 660,1306 0,968 -chrXIII 253721 255994 HC_gene_6588_tx_25 1 + 253721 255994 . 2 1424,404 0,1870 -chrXIII 253914 254686 HC_gene_6588_tx_10 1 + 253914 254686 . 1 773 0 -chrXIII 253914 254976 HC_gene_6588_tx_17 1 + 253914 254976 . 1 1063 0 -chrXIII 253914 255994 HC_gene_6588_tx_26 3 + 253914 255994 . 1 2081 0 -chrXIII 253975 254710 HC_gene_6588_tx_11 1 + 253975 254710 . 1 736 0 -chrXIII 253975 254976 HC_gene_6588_tx_18 1 + 253975 254976 . 2 158,781 0,221 -chrXIII 253975 255994 HC_gene_6588_tx_27 2 + 253975 255994 . 1 2020 0 -chrXIII 254055 254680 HC_gene_6588_tx_12 1 + 254055 254680 . 1 626 0 -chrXIII 254055 254686 HC_gene_6588_tx_13 1 + 254055 254686 . 1 632 0 -chrXIII 254055 254696 HC_gene_6588_tx_14 1 + 254055 254696 . 1 642 0 -chrXIII 254055 254703 HC_gene_6588_tx_15 1 + 254055 254703 . 1 649 0 -chrXIII 254055 255892 HC_gene_6588_tx_28 1 + 254055 255892 . 1 1838 0 -chrXIII 254055 255994 HC_gene_6588_tx_29 4 + 254055 255994 . 1 1940 0 -chrXIII 254190 254674 HC_gene_6588_tx_33 1 + 254190 254674 . 1 485 0 -chrXIII 254190 254684 HC_gene_6588_tx_34 1 + 254190 254684 . 1 495 0 -chrXIII 254190 254695 HC_gene_6588_tx_35 2 + 254190 254695 . 1 506 0 -chrXIII 254190 254710 HC_gene_6588_tx_36 1 + 254190 254710 . 1 521 0 -chrXIII 254190 254976 HC_gene_6588_tx_40 3 + 254190 254976 . 1 787 0 -chrXIII 254190 255994 HC_gene_6588_tx_30 5 + 254190 255994 . 1 1805 0 -chrXIII 254278 254686 HC_gene_6588_tx_37 1 + 254278 254686 . 1 409 0 -chrXIII 254278 254694 HC_gene_6588_tx_38 1 + 254278 254694 . 1 417 0 -chrXIII 254278 254711 HC_gene_6588_tx_39 1 + 254278 254711 . 1 434 0 -chrXIII 254278 254976 HC_gene_6588_tx_41 1 + 254278 254976 . 1 699 0 -chrXIII 254278 255892 HC_gene_6588_tx_31 2 + 254278 255892 . 1 1615 0 -chrXIII 254278 255994 HC_gene_6588_tx_32 3 + 254278 255994 . 1 1717 0 -chrXIII 256017 258566 HC_gene_6947_tx_1 9 - 256017 258566 . 1 2550 0 -chrXIII 258333 259252 MC_gene_6589_tx_1 1 + 258333 259252 . 1 920 0 -chrXIII 258693 258959 HC_gene_6948_tx_1 25 - 258693 258959 . 1 267 0 -chrXIII 259359 260080 HC_gene_6949_tx_1 2 - 259359 260080 . 1 722 0 -chrXIII 260213 261660 HC_gene_6590_tx_1 11 + 260213 261660 . 1 1448 0 -chrXIII 261566 262174 HC_gene_6950_tx_1 52 - 261566 262174 . 1 609 0 -chrXIII 261566 262279 HC_gene_6950_tx_2 22 - 261566 262279 . 1 714 0 -chrXIII 261566 262403 HC_gene_6950_tx_3 32 - 261566 262403 . 1 838 0 -chrXIII 261566 262704 HC_gene_6950_tx_4 146 - 261566 262704 . 1 1139 0 -chrXIII 261566 262870 HC_gene_6950_tx_5 2 - 261566 262870 . 1 1305 0 -chrXIII 261638 262704 HC_gene_6950_tx_6 20 - 261638 262704 . 1 1067 0 -chrXIII 262744 264247 LC_gene_6951_tx_1 1 - 262744 264247 . 1 1504 0 -chrXIII 262814 263378 MC_gene_6591_tx_1 1 + 262814 263378 . 1 565 0 -chrXIII 263481 264972 HC_gene_6592_tx_1 1 + 263481 264972 . 1 1492 0 -chrXIII 263481 266841 HC_gene_6592_tx_2 3 + 263481 266841 . 1 3361 0 -chrXIII 265473 266786 HC_gene_6952_tx_1 6 - 265473 266786 . 1 1314 0 -chrXIII 265547 266786 HC_gene_6952_tx_2 1 - 265547 266786 . 1 1240 0 -chrXIII 266162 266588 HC_gene_6952_tx_3 1 - 266162 266588 . 1 427 0 -chrXIII 266162 266786 HC_gene_6952_tx_4 2 - 266162 266786 . 1 625 0 -chrXIII 266750 267481 HC_gene_6953_tx_1 1 - 266750 267481 . 1 732 0 -chrXIII 266835 267481 HC_gene_6953_tx_2 4 - 266835 267481 . 1 647 0 -chrXIII 266933 267911 HC_gene_6593_tx_1 3 + 266933 267911 . 1 979 0 -chrXIII 267080 267911 HC_gene_6593_tx_2 223 + 267080 267911 . 1 832 0 -chrXIII 267397 267911 HC_gene_6593_tx_3 22 + 267397 267911 . 1 515 0 -chrXIII 268422 268989 LC_gene_6594_tx_1 1 + 268422 268989 . 1 568 0 -chrXIII 268916 271264 HC_gene_6954_tx_1 6 - 268916 271264 . 1 2349 0 -chrXIII 268916 271319 HC_gene_6954_tx_2 2 - 268916 271319 . 1 2404 0 -chrXIII 268916 271521 HC_gene_6954_tx_3 14 - 268916 271521 . 1 2606 0 -chrXIII 268916 271521 HC_gene_6954_tx_4 1 - 268916 271521 . 2 1564,963 0,1643 -chrXIII 268972 271264 HC_gene_6954_tx_5 1 - 268972 271264 . 1 2293 0 -chrXIII 268972 271521 HC_gene_6954_tx_6 3 - 268972 271521 . 1 2550 0 -chrXIII 269345 271521 HC_gene_6954_tx_7 1 - 269345 271521 . 1 2177 0 -chrXIII 270968 271319 LC_gene_6595_tx_1 1 + 270968 271319 . 1 352 0 -chrXIII 271580 271906 HC_gene_6955_tx_1 1 - 271580 271906 . 1 327 0 -chrXIII 271663 271906 HC_gene_6955_tx_2 9 - 271663 271906 . 1 244 0 -chrXIII 271940 272581 LC_gene_6956_tx_1 1 - 271940 272581 . 1 642 0 -chrXIII 272142 272903 HC_gene_6596_tx_1 535 + 272142 272903 . 1 762 0 -chrXIII 272456 272903 HC_gene_6596_tx_2 131 + 272456 272903 . 1 448 0 -chrXIII 273090 273791 HC_gene_6597_tx_1 37 + 273090 273791 . 1 702 0 -chrXIII 273162 273791 HC_gene_6597_tx_2 3 + 273162 273791 . 1 630 0 -chrXIII 273211 273771 MC_gene_6957_tx_1 1 - 273211 273771 . 1 561 0 -chrXIII 273372 273791 HC_gene_6597_tx_3 3 + 273372 273791 . 1 420 0 -chrXIII 273956 275728 HC_gene_6598_tx_1 17 + 273956 275728 . 1 1773 0 -chrXIII 273956 275728 HC_gene_6598_tx_2 1 + 273956 275728 . 2 1215,503 0,1270 -chrXIII 275621 276104 MC_gene_6958_tx_1 1 - 275621 276104 . 1 484 0 -chrXIII 275973 277339 HC_gene_6599_tx_1 20 + 275973 277339 . 1 1367 0 -chrXIII 276245 277339 HC_gene_6599_tx_2 5 + 276245 277339 . 1 1095 0 -chrXIII 276517 277339 HC_gene_6599_tx_3 5 + 276517 277339 . 1 823 0 -chrXIII 277456 277892 HC_gene_6959_tx_1 6 - 277456 277892 . 1 437 0 -chrXIII 277456 279740 HC_gene_6959_tx_2 14 - 277456 279740 . 1 2285 0 -chrXIII 278833 279881 MC_gene_6600_tx_1 1 + 278833 279881 . 1 1049 0 -chrXIII 279947 280512 HC_gene_6601_tx_1 6 + 279947 280512 . 1 566 0 -chrXIII 280255 281621 HC_gene_6960_tx_1 6 - 280255 281621 . 1 1367 0 -chrXIII 280255 281872 HC_gene_6960_tx_2 6 - 280255 281872 . 1 1618 0 -chrXIII 280255 282140 HC_gene_6960_tx_3 2 - 280255 282140 . 1 1886 0 -chrXIII 280255 282633 HC_gene_6960_tx_4 24 - 280255 282633 . 1 2379 0 -chrXIII 280255 282633 HC_gene_6960_tx_5 1 - 280255 282633 . 2 1339,962 0,1417 -chrXIII 280382 281621 HC_gene_6960_tx_6 1 - 280382 281621 . 1 1240 0 -chrXIII 280382 281621 HC_gene_6960_tx_7 1 - 280382 281621 . 2 314,865 0,375 -chrXIII 280382 281872 HC_gene_6960_tx_8 4 - 280382 281872 . 1 1491 0 -chrXIII 280382 282140 HC_gene_6960_tx_9 1 - 280382 282140 . 1 1759 0 -chrXIII 280382 282266 HC_gene_6960_tx_10 2 - 280382 282266 . 1 1885 0 -chrXIII 280382 282633 HC_gene_6960_tx_11 12 - 280382 282633 . 1 2252 0 -chrXIII 280471 282633 HC_gene_6960_tx_12 2 - 280471 282633 . 1 2163 0 -chrXIII 282672 283608 HC_gene_6961_tx_1 4 - 282672 283608 . 1 937 0 -chrXIII 283066 283719 HC_gene_6602_tx_1 2 + 283066 283719 . 1 654 0 -chrXIII 283135 283719 HC_gene_6602_tx_2 3 + 283135 283719 . 1 585 0 -chrXIII 283258 283788 HC_gene_6603_tx_1 1 + 283258 283788 . 1 531 0 -chrXIII 283263 283719 HC_gene_6603_tx_2 7 + 283263 283719 . 1 457 0 -chrXIII 283263 283788 HC_gene_6603_tx_3 1 + 283263 283788 . 1 526 0 -chrXIII 283641 284669 HC_gene_6604_tx_1 1 + 283641 284669 . 1 1029 0 -chrXIII 283641 284714 HC_gene_6604_tx_2 1 + 283641 284714 . 1 1074 0 -chrXIII 283641 284794 HC_gene_6604_tx_3 2 + 283641 284794 . 1 1154 0 -chrXIII 283641 284989 HC_gene_6604_tx_4 2 + 283641 284989 . 1 1349 0 -chrXIII 283641 285091 HC_gene_6604_tx_5 2 + 283641 285091 . 1 1451 0 -chrXIII 283641 286680 HC_gene_6604_tx_24 1 + 283641 286680 . 1 3040 0 -chrXIII 283814 284674 HC_gene_6604_tx_6 1 + 283814 284674 . 1 861 0 -chrXIII 283814 284794 HC_gene_6604_tx_7 2 + 283814 284794 . 1 981 0 -chrXIII 283950 284672 HC_gene_6604_tx_8 1 + 283950 284672 . 1 723 0 -chrXIII 283950 284723 HC_gene_6604_tx_9 1 + 283950 284723 . 1 774 0 -chrXIII 284067 284670 HC_gene_6604_tx_10 1 + 284067 284670 . 1 604 0 -chrXIII 284067 284673 HC_gene_6604_tx_11 1 + 284067 284673 . 1 607 0 -chrXIII 284067 284674 HC_gene_6604_tx_12 1 + 284067 284674 . 1 608 0 -chrXIII 284067 284676 HC_gene_6604_tx_13 1 + 284067 284676 . 1 610 0 -chrXIII 284067 284693 HC_gene_6604_tx_14 1 + 284067 284693 . 1 627 0 -chrXIII 284067 284714 HC_gene_6604_tx_15 2 + 284067 284714 . 1 648 0 -chrXIII 284067 284720 HC_gene_6604_tx_16 2 + 284067 284720 . 1 654 0 -chrXIII 284067 284721 HC_gene_6604_tx_17 1 + 284067 284721 . 1 655 0 -chrXIII 284067 284723 HC_gene_6604_tx_18 9 + 284067 284723 . 1 657 0 -chrXIII 284067 284724 HC_gene_6604_tx_19 1 + 284067 284724 . 1 658 0 -chrXIII 284067 284729 HC_gene_6604_tx_20 1 + 284067 284729 . 1 663 0 -chrXIII 284067 284730 HC_gene_6604_tx_21 1 + 284067 284730 . 1 664 0 -chrXIII 284067 284742 HC_gene_6604_tx_22 4 + 284067 284742 . 1 676 0 -chrXIII 284067 284794 HC_gene_6604_tx_23 6 + 284067 284794 . 1 728 0 -chrXIII 284067 284989 HC_gene_6604_tx_25 2 + 284067 284989 . 1 923 0 -chrXIII 284067 285081 HC_gene_6604_tx_26 1 + 284067 285081 . 1 1015 0 -chrXIII 284067 285083 HC_gene_6604_tx_27 1 + 284067 285083 . 1 1017 0 -chrXIII 284067 285084 HC_gene_6604_tx_28 1 + 284067 285084 . 1 1018 0 -chrXIII 284067 285085 HC_gene_6604_tx_29 1 + 284067 285085 . 1 1019 0 -chrXIII 284067 285091 HC_gene_6604_tx_30 1 + 284067 285091 . 1 1025 0 -chrXIII 284067 286429 HC_gene_6604_tx_31 1 + 284067 286429 . 1 2363 0 -chrXIII 284274 284618 MC_gene_6962_tx_1 1 - 284274 284618 . 1 345 0 -chrXIII 284640 285429 LC_gene_6963_tx_1 1 - 284640 285429 . 1 790 0 -chrXIII 284871 286429 HC_gene_6605_tx_1 32 + 284871 286429 . 1 1559 0 -chrXIII 284871 286429 HC_gene_6605_tx_2 1 + 284871 286429 . 2 813,688 0,871 -chrXIII 284871 286606 HC_gene_6605_tx_3 1 + 284871 286606 . 2 1485,161 0,1575 -chrXIII 284871 286766 HC_gene_6605_tx_4 7 + 284871 286766 . 1 1896 0 -chrXIII 284871 286839 HC_gene_6605_tx_5 3 + 284871 286839 . 1 1969 0 -chrXIII 285094 286429 HC_gene_6605_tx_6 6 + 285094 286429 . 1 1336 0 -chrXIII 285094 286680 HC_gene_6605_tx_7 2 + 285094 286680 . 1 1587 0 -chrXIII 285094 286766 HC_gene_6605_tx_8 2 + 285094 286766 . 1 1673 0 -chrXIII 285094 286839 HC_gene_6605_tx_9 1 + 285094 286839 . 1 1746 0 -chrXIII 286632 287111 MC_gene_6964_tx_1 1 - 286632 287111 . 1 480 0 -chrXIII 288005 289777 LC_gene_6965_tx_1 1 - 288005 289777 . 1 1773 0 -chrXIII 288040 289811 HC_gene_6606_tx_1 279 + 288040 289811 . 1 1772 0 -chrXIII 288040 289811 HC_gene_6606_tx_2 1 + 288040 289811 . 2 112,1174 0,598 -chrXIII 288040 289811 HC_gene_6606_tx_3 1 + 288040 289811 . 2 1024,704 0,1068 -chrXIII 288040 289811 HC_gene_6606_tx_4 1 + 288040 289811 . 2 685,970 0,802 -chrXIII 288040 289811 HC_gene_6606_tx_5 1 + 288040 289811 . 2 916,734 0,1038 -chrXIII 288040 289811 HC_gene_6606_tx_6 1 + 288040 289811 . 2 933,757 0,1015 -chrXIII 288040 289811 HC_gene_6606_tx_7 1 + 288040 289811 . 2 1057,623 0,1149 -chrXIII 288040 289811 HC_gene_6606_tx_8 1 + 288040 289811 . 2 106,863 0,909 -chrXIII 288040 289811 HC_gene_6606_tx_9 1 + 288040 289811 . 2 202,1453 0,319 -chrXIII 288040 289811 HC_gene_6606_tx_10 1 + 288040 289811 . 2 70,1216 0,556 -chrXIII 288040 289811 HC_gene_6606_tx_11 1 + 288040 289811 . 2 1179,531 0,1241 -chrXIII 288040 289811 HC_gene_6606_tx_12 1 + 288040 289811 . 4 529,106,512,377 0,614,802,1395 -chrXIII 288040 289811 HC_gene_6606_tx_13 1 + 288040 289811 . 2 147,1117 0,655 -chrXIII 288040 289811 HC_gene_6606_tx_14 1 + 288040 289811 . 2 370,1332 0,440 -chrXIII 288441 289811 HC_gene_6606_tx_15 31 + 288441 289811 . 1 1371 0 -chrXIII 288441 289811 HC_gene_6606_tx_16 1 + 288441 289811 . 2 221,844 0,527 -chrXIII 288441 290157 HC_gene_6606_tx_20 1 + 288441 290157 . 1 1717 0 -chrXIII 288590 289811 HC_gene_6606_tx_17 41 + 288590 289811 . 1 1222 0 -chrXIII 288590 289811 HC_gene_6606_tx_18 1 + 288590 289811 . 2 390,714 0,508 -chrXIII 288590 289811 HC_gene_6606_tx_19 1 + 288590 289811 . 2 760,402 0,820 -chrXIII 288986 289811 HC_gene_6606_tx_21 55 + 288986 289811 . 1 826 0 -chrXIII 289228 289811 HC_gene_6606_tx_22 56 + 289228 289811 . 1 584 0 -chrXIII 289228 289811 HC_gene_6606_tx_23 1 + 289228 289811 . 2 308,196 0,388 -chrXIII 289228 290157 HC_gene_6606_tx_24 1 + 289228 290157 . 1 930 0 -chrXIII 289937 290421 HC_gene_6607_tx_1 1 + 289937 290421 . 1 485 0 -chrXIII 289937 290733 HC_gene_6607_tx_2 6 + 289937 290733 . 1 797 0 -chrXIII 291005 294315 HC_gene_6608_tx_1 1 + 291005 294315 . 1 3311 0 -chrXIII 291005 295104 HC_gene_6608_tx_2 1 + 291005 295104 . 2 2779,1201 0,2899 -chrXIII 291005 295104 HC_gene_6608_tx_3 1 + 291005 295104 . 2 2820,1205 0,2895 -chrXIII 291005 295104 HC_gene_6608_tx_4 17 + 291005 295104 . 1 4100 0 -chrXIII 291005 295104 HC_gene_6608_tx_5 1 + 291005 295104 . 2 1813,2174 0,1926 -chrXIII 291005 295104 HC_gene_6608_tx_6 1 + 291005 295104 . 2 961,3055 0,1045 -chrXIII 291369 295104 HC_gene_6608_tx_7 2 + 291369 295104 . 1 3736 0 -chrXIII 291369 295104 HC_gene_6608_tx_8 1 + 291369 295104 . 2 3261,403 0,3333 -chrXIII 291788 295104 HC_gene_6608_tx_9 1 + 291788 295104 . 1 3317 0 -chrXIII 291788 295104 HC_gene_6608_tx_10 1 + 291788 295104 . 2 1962,925 0,2392 -chrXIII 291876 294305 HC_gene_6608_tx_30 1 + 291876 294305 . 1 2430 0 -chrXIII 291876 295104 HC_gene_6608_tx_11 2 + 291876 295104 . 1 3229 0 -chrXIII 291971 295104 HC_gene_6608_tx_12 1 + 291971 295104 . 2 1614,1426 0,1708 -chrXIII 291971 295104 HC_gene_6608_tx_13 3 + 291971 295104 . 1 3134 0 -chrXIII 292174 294315 HC_gene_6608_tx_31 1 + 292174 294315 . 1 2142 0 -chrXIII 292174 295104 HC_gene_6608_tx_14 1 + 292174 295104 . 2 1523,1339 0,1592 -chrXIII 292174 295104 HC_gene_6608_tx_15 4 + 292174 295104 . 1 2931 0 -chrXIII 292283 295104 HC_gene_6608_tx_16 3 + 292283 295104 . 1 2822 0 -chrXIII 292283 295104 HC_gene_6608_tx_17 1 + 292283 295104 . 2 1550,1197 0,1625 -chrXIII 292469 295104 HC_gene_6608_tx_18 5 + 292469 295104 . 1 2636 0 -chrXIII 292539 295104 HC_gene_6608_tx_19 6 + 292539 295104 . 1 2566 0 -chrXIII 292662 295104 HC_gene_6608_tx_20 5 + 292662 295104 . 1 2443 0 -chrXIII 292728 295104 HC_gene_6608_tx_21 1 + 292728 295104 . 1 2377 0 -chrXIII 292848 295104 HC_gene_6608_tx_22 2 + 292848 295104 . 1 2257 0 -chrXIII 292848 295104 HC_gene_6608_tx_23 1 + 292848 295104 . 2 1679,522 0,1735 -chrXIII 292991 295104 HC_gene_6608_tx_24 3 + 292991 295104 . 1 2114 0 -chrXIII 293097 295104 HC_gene_6608_tx_25 2 + 293097 295104 . 1 2008 0 -chrXIII 293097 295104 HC_gene_6608_tx_26 1 + 293097 295104 . 2 1026,863 0,1145 -chrXIII 293097 295104 HC_gene_6608_tx_27 1 + 293097 295104 . 2 307,1184 0,824 -chrXIII 293265 295104 HC_gene_6608_tx_28 13 + 293265 295104 . 1 1840 0 -chrXIII 293529 295104 HC_gene_6608_tx_29 2 + 293529 295104 . 1 1576 0 -chrXIII 294017 295104 HC_gene_6608_tx_32 6 + 294017 295104 . 1 1088 0 -chrXIII 294074 295104 HC_gene_6608_tx_33 19 + 294074 295104 . 1 1031 0 -chrXIII 294323 295104 HC_gene_6608_tx_34 21 + 294323 295104 . 1 782 0 -chrXIII 294718 295104 HC_gene_6608_tx_35 52 + 294718 295104 . 1 387 0 -chrXIII 294973 296787 HC_gene_6966_tx_1 10 - 294973 296787 . 1 1815 0 -chrXIII 295175 296787 HC_gene_6966_tx_2 2 - 295175 296787 . 1 1613 0 -chrXIII 297107 297434 HC_gene_6609_tx_1 4 + 297107 297434 . 1 328 0 -chrXIII 297107 297649 HC_gene_6609_tx_2 1 + 297107 297649 . 1 543 0 -chrXIII 297107 297653 HC_gene_6609_tx_3 1 + 297107 297653 . 1 547 0 -chrXIII 297107 297901 HC_gene_6609_tx_4 3 + 297107 297901 . 1 795 0 -chrXIII 297243 297434 HC_gene_6609_tx_5 1 + 297243 297434 . 1 192 0 -chrXIII 297243 297999 HC_gene_6609_tx_6 3 + 297243 297999 . 1 757 0 -chrXIII 297884 298579 LC_gene_6967_tx_1 1 - 297884 298579 . 1 696 0 -chrXIII 298085 298482 MC_gene_6610_tx_1 1 + 298085 298482 . 1 398 0 -chrXIII 298841 300539 HC_gene_6611_tx_1 50 + 298841 300539 . 1 1699 0 -chrXIII 298841 300539 HC_gene_6611_tx_2 1 + 298841 300539 . 2 1552,62 0,1637 -chrXIII 299588 300539 HC_gene_6611_tx_3 8 + 299588 300539 . 1 952 0 -chrXIII 299785 300539 HC_gene_6611_tx_4 1 + 299785 300539 . 2 41,572 0,183 -chrXIII 299785 300539 HC_gene_6611_tx_5 1 + 299785 300539 . 2 661,30 0,725 -chrXIII 299785 300539 HC_gene_6611_tx_6 6 + 299785 300539 . 1 755 0 -chrXIII 299868 300539 HC_gene_6611_tx_7 20 + 299868 300539 . 1 672 0 -chrXIII 300103 300539 HC_gene_6611_tx_8 20 + 300103 300539 . 1 437 0 -chrXIII 300698 301618 HC_gene_6968_tx_1 10 - 300698 301618 . 1 921 0 -chrXIII 300698 302540 HC_gene_6968_tx_2 77 - 300698 302540 . 1 1843 0 -chrXIII 300698 302540 HC_gene_6968_tx_3 1 - 300698 302540 . 2 81,1695 0,148 -chrXIII 300698 302592 HC_gene_6968_tx_4 2 - 300698 302592 . 1 1895 0 -chrXIII 302763 303873 LC_gene_6612_tx_1 1 + 302763 303873 . 1 1111 0 -chrXIII 303114 303496 HC_gene_6969_tx_1 9 - 303114 303496 . 1 383 0 -chrXIII 303114 303711 HC_gene_6969_tx_2 9 - 303114 303711 . 1 598 0 -chrXIII 303114 303974 HC_gene_6969_tx_3 13 - 303114 303974 . 1 861 0 -chrXIII 304064 307383 LC_gene_6613_tx_1 1 + 304064 307383 . 1 3320 0 -chrXIII 305732 305911 HC_gene_6970_tx_1 2 - 305732 305911 . 1 180 0 -chrXIII 305732 306019 HC_gene_6970_tx_2 2 - 305732 306019 . 1 288 0 -chrXIII 308026 308797 LC_gene_6971_tx_1 1 - 308026 308797 . 1 772 0 -chrXIII 308066 308847 MC_gene_6614_tx_1 1 + 308066 308847 . 1 782 0 -chrXIII 308598 309368 MC_gene_6615_tx_1 1 + 308598 309368 . 1 771 0 -chrXIII 309299 310079 LC_gene_6972_tx_1 1 - 309299 310079 . 1 781 0 -chrXIII 309744 311775 MC_gene_6616_tx_1 1 + 309744 311775 . 1 2032 0 -chrXIII 311465 312034 HC_gene_6973_tx_1 5 - 311465 312034 . 1 570 0 -chrXIII 311692 312034 HC_gene_6973_tx_2 39 - 311692 312034 . 1 343 0 -chrXIII 312264 313701 HC_gene_6617_tx_1 1 + 312264 313701 . 1 1438 0 -chrXIII 312264 313719 HC_gene_6617_tx_2 1 + 312264 313719 . 1 1456 0 -chrXIII 313654 314973 MC_gene_6974_tx_1 1 - 313654 314973 . 1 1320 0 -chrXIII 313716 315306 MC_gene_6618_tx_1 1 + 313716 315306 . 1 1591 0 -chrXIII 315341 316999 HC_gene_6619_tx_1 1 + 315341 316999 . 1 1659 0 -chrXIII 315341 317018 HC_gene_6619_tx_2 1 + 315341 317018 . 1 1678 0 -chrXIII 315642 316999 HC_gene_6619_tx_3 1 + 315642 316999 . 1 1358 0 -chrXIII 316310 316813 LC_gene_6975_tx_1 1 - 316310 316813 . 1 504 0 -chrXIII 316892 317346 HC_gene_6976_tx_1 12 - 316892 317346 . 1 455 0 -chrXIII 316892 318320 HC_gene_6976_tx_2 2 - 316892 318320 . 1 1429 0 -chrXIII 316892 318476 HC_gene_6976_tx_3 18 - 316892 318476 . 1 1585 0 -chrXIII 317122 317346 HC_gene_6976_tx_5 1 - 317122 317346 . 1 225 0 -chrXIII 317122 318476 HC_gene_6976_tx_4 1 - 317122 318476 . 1 1355 0 -chrXIII 318650 319327 HC_gene_6620_tx_1 182 + 318650 319327 . 1 678 0 -chrXIII 318650 319327 HC_gene_6620_tx_2 1 + 318650 319327 . 2 433,158 0,520 -chrXIII 318650 319327 HC_gene_6620_tx_3 1 + 318650 319327 . 2 558,76 0,602 -chrXIII 319382 320522 HC_gene_6977_tx_1 4 - 319382 320522 . 1 1141 0 -chrXIII 319382 321040 HC_gene_6977_tx_2 2 - 319382 321040 . 1 1659 0 -chrXIII 320113 321071 MC_gene_6621_tx_1 1 + 320113 321071 . 1 959 0 -chrXIII 321286 321768 LC_gene_6978_tx_1 1 - 321286 321768 . 1 483 0 -chrXIII 321897 323143 HC_gene_6622_tx_1 25 + 321897 323143 . 1 1247 0 -chrXIII 321897 323245 HC_gene_6622_tx_2 14 + 321897 323245 . 1 1349 0 -chrXIII 322456 323143 HC_gene_6622_tx_3 5 + 322456 323143 . 1 688 0 -chrXIII 322595 323143 HC_gene_6622_tx_4 4 + 322595 323143 . 1 549 0 -chrXIII 322595 323245 HC_gene_6622_tx_5 1 + 322595 323245 . 1 651 0 -chrXIII 323071 323709 MC_gene_6979_tx_1 1 - 323071 323709 . 1 639 0 -chrXIII 323292 324235 HC_gene_6623_tx_1 10 + 323292 324235 . 1 944 0 -chrXIII 323292 324235 HC_gene_6623_tx_2 1 + 323292 324235 . 2 236,540 0,404 -chrXIII 323292 324839 HC_gene_6623_tx_3 1 + 323292 324839 . 1 1548 0 -chrXIII 324158 325542 HC_gene_6980_tx_1 27 - 324158 325542 . 1 1385 0 -chrXIII 324158 325617 HC_gene_6980_tx_2 1 - 324158 325617 . 1 1460 0 -chrXIII 325808 327386 HC_gene_6624_tx_1 96 + 325808 327386 . 1 1579 0 -chrXIII 325808 327386 HC_gene_6624_tx_2 1 + 325808 327386 . 2 904,611 0,968 -chrXIII 325808 327386 HC_gene_6624_tx_3 1 + 325808 327386 . 2 848,606 0,973 -chrXIII 325808 327386 HC_gene_6624_tx_4 1 + 325808 327386 . 2 904,638 0,941 -chrXIII 325808 327386 HC_gene_6624_tx_5 1 + 325808 327386 . 2 811,638 0,941 -chrXIII 326186 327386 HC_gene_6624_tx_6 14 + 326186 327386 . 1 1201 0 -chrXIII 326186 327386 HC_gene_6624_tx_7 1 + 326186 327386 . 2 782,347 0,854 -chrXIII 326332 327386 HC_gene_6624_tx_8 14 + 326332 327386 . 1 1055 0 -chrXIII 326447 327386 HC_gene_6624_tx_9 4 + 326447 327386 . 1 940 0 -chrXIII 326513 327386 HC_gene_6624_tx_10 13 + 326513 327386 . 1 874 0 -chrXIII 326574 327386 HC_gene_6624_tx_11 6 + 326574 327386 . 1 813 0 -chrXIII 327461 328685 HC_gene_6625_tx_1 28 + 327461 328685 . 1 1225 0 -chrXIII 327461 328685 HC_gene_6625_tx_2 1 + 327461 328685 . 2 52,855 0,370 -chrXIII 328009 328685 HC_gene_6625_tx_3 5 + 328009 328685 . 1 677 0 -chrXIII 328102 328685 HC_gene_6625_tx_4 3 + 328102 328685 . 1 584 0 -chrXIII 328237 330270 HC_gene_6981_tx_1 1 - 328237 330270 . 2 710,1261 0,773 -chrXIII 328237 330270 HC_gene_6981_tx_2 1 - 328237 330270 . 1 2034 0 -chrXIII 328474 330270 HC_gene_6981_tx_3 1 - 328474 330270 . 1 1797 0 -chrXIII 328549 330015 HC_gene_6981_tx_4 1 - 328549 330015 . 1 1467 0 -chrXIII 328549 330270 HC_gene_6981_tx_5 25 - 328549 330270 . 1 1722 0 -chrXIII 328549 330270 HC_gene_6981_tx_6 1 - 328549 330270 . 2 800,821 0,901 -chrXIII 330616 332057 MC_gene_6626_tx_1 1 + 330616 332057 . 1 1442 0 -chrXIII 330785 332034 MC_gene_6626_tx_2 1 + 330785 332034 . 1 1250 0 -chrXIII 331203 331900 MC_gene_6982_tx_1 1 - 331203 331900 . 1 698 0 -chrXIII 331265 332035 MC_gene_6626_tx_3 1 + 331265 332035 . 1 771 0 -chrXIII 332040 332508 HC_gene_6983_tx_1 17 - 332040 332508 . 1 469 0 -chrXIII 332040 332775 HC_gene_6983_tx_2 36 - 332040 332775 . 1 736 0 -chrXIII 332040 333085 HC_gene_6983_tx_3 4 - 332040 333085 . 1 1046 0 -chrXIII 332040 333177 HC_gene_6983_tx_4 12 - 332040 333177 . 1 1138 0 -chrXIII 332040 333177 HC_gene_6983_tx_5 1 - 332040 333177 . 2 487,331 0,807 -chrXIII 332040 333286 HC_gene_6983_tx_6 2 - 332040 333286 . 1 1247 0 -chrXIII 332040 333438 HC_gene_6983_tx_7 4 - 332040 333438 . 1 1399 0 -chrXIII 332040 333513 HC_gene_6983_tx_8 4 - 332040 333513 . 1 1474 0 -chrXIII 332040 333589 HC_gene_6983_tx_9 5 - 332040 333589 . 1 1550 0 -chrXIII 332040 333799 HC_gene_6983_tx_10 5 - 332040 333799 . 1 1760 0 -chrXIII 332040 333799 HC_gene_6983_tx_11 1 - 332040 333799 . 2 657,979 0,781 -chrXIII 332040 334540 HC_gene_6983_tx_12 1 - 332040 334540 . 1 2501 0 -chrXIII 332040 334815 HC_gene_6983_tx_13 21 - 332040 334815 . 1 2776 0 -chrXIII 332040 334815 HC_gene_6983_tx_14 1 - 332040 334815 . 2 710,1822 0,954 -chrXIII 332040 334815 HC_gene_6983_tx_15 1 - 332040 334815 . 2 2473,174 0,2602 -chrXIII 332040 334815 HC_gene_6983_tx_16 1 - 332040 334815 . 2 555,2164 0,612 -chrXIII 335197 337466 HC_gene_6627_tx_1 9 + 335197 337466 . 1 2270 0 -chrXIII 335296 337515 LC_gene_6984_tx_1 1 - 335296 337515 . 1 2220 0 -chrXIII 335449 337466 HC_gene_6627_tx_2 1 + 335449 337466 . 1 2018 0 -chrXIII 335705 337466 HC_gene_6627_tx_3 2 + 335705 337466 . 1 1762 0 -chrXIII 337744 339433 HC_gene_6628_tx_1 34 + 337744 339433 . 2 74,1530 0,160 -chrXIII 337744 339433 HC_gene_6628_tx_2 4 + 337744 339433 . 1 1690 0 -chrXIII 337744 339433 HC_gene_6628_tx_3 1 + 337744 339433 . 3 74,853,620 0,160,1070 -chrXIII 337744 339433 HC_gene_6628_tx_4 1 + 337744 339433 . 2 74,1516 0,174 -chrXIII 338443 339433 HC_gene_6628_tx_5 9 + 338443 339433 . 1 991 0 -chrXIII 339310 340910 HC_gene_6985_tx_1 3 - 339310 340910 . 1 1601 0 -chrXIII 340113 340921 MC_gene_6629_tx_1 1 + 340113 340921 . 1 809 0 -chrXIII 341100 341777 HC_gene_6630_tx_1 60 + 341100 341777 . 1 678 0 -chrXIII 341398 341777 HC_gene_6630_tx_2 10 + 341398 341777 . 1 380 0 -chrXIII 341697 343563 HC_gene_6986_tx_1 10 - 341697 343563 . 1 1867 0 -chrXIII 341697 343563 HC_gene_6986_tx_2 1 - 341697 343563 . 2 979,559 0,1308 -chrXIII 343737 344249 HC_gene_6631_tx_1 4 + 343737 344249 . 1 513 0 -chrXIII 344108 344779 HC_gene_6987_tx_1 10 - 344108 344779 . 1 672 0 -chrXIII 344108 345612 HC_gene_6987_tx_2 5 - 344108 345612 . 1 1505 0 -chrXIII 344108 345779 HC_gene_6987_tx_3 6 - 344108 345779 . 1 1672 0 -chrXIII 344108 346151 HC_gene_6987_tx_4 1 - 344108 346151 . 1 2044 0 -chrXIII 344108 346602 HC_gene_6987_tx_5 1 - 344108 346602 . 1 2495 0 -chrXIII 344108 346993 HC_gene_6987_tx_6 9 - 344108 346993 . 1 2886 0 -chrXIII 347209 348610 HC_gene_6632_tx_1 1 + 347209 348610 . 1 1402 0 -chrXIII 347383 347747 HC_gene_6988_tx_1 25 - 347383 347747 . 1 365 0 -chrXIII 347383 347883 HC_gene_6988_tx_2 45 - 347383 347883 . 1 501 0 -chrXIII 347383 347956 HC_gene_6988_tx_3 23 - 347383 347956 . 1 574 0 -chrXIII 347383 348041 HC_gene_6988_tx_4 14 - 347383 348041 . 1 659 0 -chrXIII 347383 348134 HC_gene_6988_tx_5 28 - 347383 348134 . 1 752 0 -chrXIII 347383 348291 HC_gene_6988_tx_6 234 - 347383 348291 . 1 909 0 -chrXIII 347383 348920 HC_gene_6988_tx_7 1 - 347383 348920 . 1 1538 0 -chrXIII 347383 349681 HC_gene_6988_tx_8 2 - 347383 349681 . 1 2299 0 -chrXIII 348423 348865 HC_gene_6988_tx_9 13 - 348423 348865 . 1 443 0 -chrXIII 348423 348920 HC_gene_6988_tx_10 26 - 348423 348920 . 1 498 0 -chrXIII 348423 348980 HC_gene_6988_tx_11 9 - 348423 348980 . 1 558 0 -chrXIII 348423 349099 HC_gene_6988_tx_12 10 - 348423 349099 . 1 677 0 -chrXIII 348423 349212 HC_gene_6988_tx_13 39 - 348423 349212 . 1 790 0 -chrXIII 348423 349378 HC_gene_6988_tx_14 3 - 348423 349378 . 1 956 0 -chrXIII 348423 349654 HC_gene_6988_tx_15 1 - 348423 349654 . 2 451,691 0,541 -chrXIII 348423 349681 HC_gene_6988_tx_16 111 - 348423 349681 . 1 1259 0 -chrXIII 348423 349681 HC_gene_6988_tx_17 1 - 348423 349681 . 2 626,550 0,709 -chrXIII 348423 349681 HC_gene_6988_tx_18 1 - 348423 349681 . 2 792,397 0,862 -chrXIII 348423 349681 HC_gene_6988_tx_19 1 - 348423 349681 . 2 104,1106 0,153 -chrXIII 348423 349681 HC_gene_6988_tx_20 1 - 348423 349681 . 2 816,350 0,909 -chrXIII 348788 349638 MC_gene_6633_tx_1 1 + 348788 349638 . 1 851 0 -chrXIII 350223 350669 HC_gene_6634_tx_1 2 + 350223 350669 . 1 447 0 -chrXIII 350311 350669 HC_gene_6634_tx_2 4 + 350311 350669 . 1 359 0 -chrXIII 350672 351440 MC_gene_6635_tx_1 1 + 350672 351440 . 1 769 0 -chrXIII 350843 351710 HC_gene_6989_tx_1 2 - 350843 351710 . 1 868 0 -chrXIII 350843 351992 HC_gene_6989_tx_2 8 - 350843 351992 . 1 1150 0 -chrXIII 350843 352201 HC_gene_6989_tx_3 9 - 350843 352201 . 1 1359 0 -chrXIII 352478 352704 HC_gene_6990_tx_1 3 - 352478 352704 . 1 227 0 -chrXIII 352478 353127 HC_gene_6990_tx_2 7 - 352478 353127 . 1 650 0 -chrXIII 352507 353594 HC_gene_6636_tx_1 43 + 352507 353594 . 1 1088 0 -chrXIII 352697 353594 HC_gene_6636_tx_2 6 + 352697 353594 . 1 898 0 -chrXIII 353273 353594 HC_gene_6636_tx_3 5 + 353273 353594 . 1 322 0 -chrXIII 353471 354932 HC_gene_6637_tx_1 6 + 353471 354932 . 1 1462 0 -chrXIII 353471 355062 HC_gene_6637_tx_2 11 + 353471 355062 . 1 1592 0 -chrXIII 353471 355062 HC_gene_6637_tx_3 1 + 353471 355062 . 2 951,537 0,1055 -chrXIII 353745 354932 HC_gene_6637_tx_4 1 + 353745 354932 . 1 1188 0 -chrXIII 353745 355062 HC_gene_6637_tx_5 3 + 353745 355062 . 1 1318 0 -chrXIII 353863 354932 HC_gene_6637_tx_6 1 + 353863 354932 . 1 1070 0 -chrXIII 353863 355062 HC_gene_6637_tx_7 25 + 353863 355062 . 1 1200 0 -chrXIII 353863 355062 HC_gene_6637_tx_8 1 + 353863 355062 . 2 446,508 0,692 -chrXIII 353863 355062 HC_gene_6637_tx_9 1 + 353863 355062 . 2 243,516 0,684 -chrXIII 353948 355062 HC_gene_6637_tx_10 5 + 353948 355062 . 1 1115 0 -chrXIII 354125 354932 HC_gene_6637_tx_11 1 + 354125 354932 . 1 808 0 -chrXIII 354125 355062 HC_gene_6637_tx_12 8 + 354125 355062 . 1 938 0 -chrXIII 354354 354932 HC_gene_6637_tx_13 1 + 354354 354932 . 1 579 0 -chrXIII 354354 355062 HC_gene_6637_tx_14 1 + 354354 355062 . 2 50,540 0,169 -chrXIII 354354 355062 HC_gene_6637_tx_15 14 + 354354 355062 . 1 709 0 -chrXIII 354354 355062 HC_gene_6637_tx_16 1 + 354354 355062 . 2 331,231 0,478 -chrXIII 354517 354932 HC_gene_6637_tx_17 6 + 354517 354932 . 1 416 0 -chrXIII 354517 355062 HC_gene_6637_tx_18 26 + 354517 355062 . 1 546 0 -chrXIII 354517 355062 HC_gene_6637_tx_19 1 + 354517 355062 . 2 404,42 0,504 -chrXIII 354715 355140 MC_gene_6991_tx_1 1 - 354715 355140 . 1 426 0 -chrXIII 355368 356996 HC_gene_6638_tx_1 47 + 355368 356996 . 1 1629 0 -chrXIII 355368 356996 HC_gene_6638_tx_2 1 + 355368 356996 . 2 826,740 0,889 -chrXIII 355368 356996 HC_gene_6638_tx_3 1 + 355368 356996 . 2 175,1381 0,248 -chrXIII 355368 356996 HC_gene_6638_tx_4 1 + 355368 356996 . 3 167,66,1134 0,254,495 -chrXIII 355591 356996 HC_gene_6638_tx_5 7 + 355591 356996 . 1 1406 0 -chrXIII 355802 356996 HC_gene_6638_tx_6 15 + 355802 356996 . 1 1195 0 -chrXIII 355930 356996 HC_gene_6638_tx_7 8 + 355930 356996 . 1 1067 0 -chrXIII 356046 356996 HC_gene_6638_tx_8 10 + 356046 356996 . 1 951 0 -chrXIII 356133 356996 HC_gene_6638_tx_9 8 + 356133 356996 . 1 864 0 -chrXIII 356133 356996 HC_gene_6638_tx_10 1 + 356133 356996 . 2 293,509 0,355 -chrXIII 356852 358394 HC_gene_6992_tx_1 1 - 356852 358394 . 1 1543 0 -chrXIII 362159 362928 MC_gene_6639_tx_1 1 + 362159 362928 . 1 770 0 -chrXIII 362172 363371 MC_gene_6640_tx_1 1 + 362172 363371 . 1 1200 0 -chrXIII 363283 363644 HC_gene_6993_tx_1 21 - 363283 363644 . 1 362 0 -chrXIII 363283 363985 HC_gene_6993_tx_2 14 - 363283 363985 . 1 703 0 -chrXIII 363283 364571 HC_gene_6993_tx_3 8 - 363283 364571 . 1 1289 0 -chrXIII 363283 364571 HC_gene_6993_tx_4 1 - 363283 364571 . 2 295,907 0,382 -chrXIII 363283 365217 HC_gene_6993_tx_5 5 - 363283 365217 . 1 1935 0 -chrXIII 363283 365811 HC_gene_6993_tx_6 2 - 363283 365811 . 1 2529 0 -chrXIII 363283 365811 HC_gene_6993_tx_7 1 - 363283 365811 . 3 1300,212,847 0,1346,1682 -chrXIII 363283 365931 HC_gene_6993_tx_8 1 - 363283 365931 . 1 2649 0 -chrXIII 363283 366781 HC_gene_6993_tx_9 11 - 363283 366781 . 1 3499 0 -chrXIII 363283 366781 HC_gene_6993_tx_10 1 - 363283 366781 . 2 912,2471 0,1028 -chrXIII 366957 368044 HC_gene_6641_tx_1 45 + 366957 368044 . 1 1088 0 -chrXIII 366957 368108 HC_gene_6641_tx_2 2 + 366957 368108 . 1 1152 0 -chrXIII 367370 368044 HC_gene_6641_tx_3 8 + 367370 368044 . 1 675 0 -chrXIII 368015 369860 HC_gene_6994_tx_1 8 - 368015 369860 . 1 1846 0 -chrXIII 368015 369860 HC_gene_6994_tx_2 1 - 368015 369860 . 2 1082,303 0,1543 -chrXIII 368015 370552 HC_gene_6994_tx_3 38 - 368015 370552 . 1 2538 0 -chrXIII 368015 370552 HC_gene_6994_tx_4 1 - 368015 370552 . 2 1935,480 0,2058 -chrXIII 368015 370552 HC_gene_6994_tx_5 1 - 368015 370552 . 2 976,1518 0,1020 -chrXIII 371118 371798 MC_gene_6642_tx_1 1 + 371118 371798 . 1 681 0 -chrXIII 371863 372154 HC_gene_6643_tx_1 4 + 371863 372154 . 1 292 0 -chrXIII 372057 372325 MC_gene_6995_tx_1 1 - 372057 372325 . 1 269 0 -chrXIII 377603 379158 MC_gene_6996_tx_1 1 - 377603 379158 . 1 1556 0 -chrXIII 377642 379120 MC_gene_6644_tx_1 1 + 377642 379120 . 1 1479 0 -chrXIII 377647 378891 MC_gene_6644_tx_2 1 + 377647 378891 . 1 1245 0 -chrXIII 377858 378970 MC_gene_6644_tx_3 1 + 377858 378970 . 1 1113 0 -chrXIII 378300 378981 MC_gene_6996_tx_2 1 - 378300 378981 . 1 682 0 -chrXIII 378305 378818 MC_gene_6996_tx_3 1 - 378305 378818 . 1 514 0 -chrXIII 379565 380300 HC_gene_6645_tx_1 21 + 379565 380300 . 1 736 0 -chrXIII 379565 380359 HC_gene_6645_tx_2 1 + 379565 380359 . 1 795 0 -chrXIII 379565 380876 HC_gene_6645_tx_3 6 + 379565 380876 . 1 1312 0 -chrXIII 380225 382899 HC_gene_6997_tx_1 1 - 380225 382899 . 2 1179,1359 0,1316 -chrXIII 383098 386011 HC_gene_6646_tx_1 6 + 383098 386011 . 1 2914 0 -chrXIII 383098 386011 HC_gene_6646_tx_2 1 + 383098 386011 . 2 1656,1134 0,1780 -chrXIII 383098 386011 HC_gene_6646_tx_3 1 + 383098 386011 . 2 1584,1207 0,1707 -chrXIII 383098 386011 HC_gene_6646_tx_4 1 + 383098 386011 . 2 635,1503 0,1411 -chrXIII 383098 386130 HC_gene_6646_tx_5 16 + 383098 386130 . 1 3033 0 -chrXIII 383098 386130 HC_gene_6646_tx_6 1 + 383098 386130 . 2 1475,1449 0,1584 -chrXIII 383098 386130 HC_gene_6646_tx_7 1 + 383098 386130 . 2 709,2027 0,1006 -chrXIII 383098 386130 HC_gene_6646_tx_8 1 + 383098 386130 . 2 572,2118 0,915 -chrXIII 383098 386584 HC_gene_6646_tx_9 1 + 383098 386584 . 1 3487 0 -chrXIII 383212 386011 HC_gene_6646_tx_10 1 + 383212 386011 . 1 2800 0 -chrXIII 383382 386011 HC_gene_6646_tx_11 2 + 383382 386011 . 1 2630 0 -chrXIII 383382 386011 HC_gene_6646_tx_12 1 + 383382 386011 . 2 1578,932 0,1698 -chrXIII 383382 386130 HC_gene_6646_tx_13 4 + 383382 386130 . 1 2749 0 -chrXIII 383382 386584 HC_gene_6646_tx_14 1 + 383382 386584 . 1 3203 0 -chrXIII 383459 386130 HC_gene_6646_tx_15 2 + 383459 386130 . 1 2672 0 -chrXIII 384200 386130 HC_gene_6646_tx_16 6 + 384200 386130 . 1 1931 0 -chrXIII 384441 386130 HC_gene_6646_tx_17 2 + 384441 386130 . 1 1690 0 -chrXIII 384795 386130 HC_gene_6646_tx_18 1 + 384795 386130 . 2 569,683 0,653 -chrXIII 384795 386130 HC_gene_6646_tx_19 2 + 384795 386130 . 1 1336 0 -chrXIII 385380 386011 HC_gene_6646_tx_20 2 + 385380 386011 . 1 632 0 -chrXIII 385380 386130 HC_gene_6646_tx_21 4 + 385380 386130 . 1 751 0 -chrXIII 385996 387051 HC_gene_6998_tx_1 8 - 385996 387051 . 1 1056 0 -chrXIII 386053 387051 HC_gene_6998_tx_2 3 - 386053 387051 . 1 999 0 -chrXIII 387190 388044 HC_gene_6999_tx_1 19 - 387190 388044 . 1 855 0 -chrXIII 387190 388202 HC_gene_6999_tx_2 4 - 387190 388202 . 1 1013 0 -chrXIII 387190 388326 HC_gene_6999_tx_3 3 - 387190 388326 . 1 1137 0 -chrXIII 388655 390971 HC_gene_7000_tx_1 2 - 388655 390971 . 1 2317 0 -chrXIII 388660 390906 HC_gene_6647_tx_1 1 + 388660 390906 . 1 2247 0 -chrXIII 388766 390906 HC_gene_6647_tx_2 159 + 388766 390906 . 1 2141 0 -chrXIII 388766 390906 HC_gene_6647_tx_3 1 + 388766 390906 . 2 1107,956 0,1185 -chrXIII 388766 390906 HC_gene_6647_tx_4 1 + 388766 390906 . 2 1997,92 0,2049 -chrXIII 388766 390906 HC_gene_6647_tx_5 1 + 388766 390906 . 2 548,1217 0,924 -chrXIII 388766 390906 HC_gene_6647_tx_6 1 + 388766 390906 . 2 67,1623 0,518 -chrXIII 388766 390906 HC_gene_6647_tx_7 1 + 388766 390906 . 2 1088,1003 0,1138 -chrXIII 388766 390906 HC_gene_6647_tx_8 1 + 388766 390906 . 2 1398,657 0,1484 -chrXIII 388766 390906 HC_gene_6647_tx_9 1 + 388766 390906 . 2 1210,833 0,1308 -chrXIII 388938 390906 HC_gene_6647_tx_10 13 + 388938 390906 . 1 1969 0 -chrXIII 389474 390906 HC_gene_6647_tx_11 35 + 389474 390906 . 1 1433 0 -chrXIII 389474 390906 HC_gene_6647_tx_12 1 + 389474 390906 . 2 200,1035 0,398 -chrXIII 389779 390906 HC_gene_6647_tx_13 41 + 389779 390906 . 1 1128 0 -chrXIII 389875 390906 HC_gene_6647_tx_14 25 + 389875 390906 . 1 1032 0 -chrXIII 391076 391591 HC_gene_6648_tx_1 69 + 391076 391591 . 1 516 0 -chrXIII 391076 391591 HC_gene_6648_tx_2 1 + 391076 391591 . 2 280,186 0,330 -chrXIII 391076 391860 HC_gene_6648_tx_3 2 + 391076 391860 . 1 785 0 -chrXIII 391490 392537 HC_gene_7001_tx_1 48 - 391490 392537 . 1 1048 0 -chrXIII 391490 392537 HC_gene_7001_tx_2 1 - 391490 392537 . 2 871,94 0,954 -chrXIII 392187 392537 HC_gene_7001_tx_3 1 - 392187 392537 . 1 351 0 -chrXIII 392730 393808 HC_gene_6649_tx_1 2 + 392730 393808 . 1 1079 0 -chrXIII 392730 394264 HC_gene_6649_tx_2 18 + 392730 394264 . 1 1535 0 -chrXIII 392730 394895 HC_gene_6649_tx_3 20 + 392730 394895 . 1 2166 0 -chrXIII 392730 394895 HC_gene_6649_tx_4 1 + 392730 394895 . 2 871,1202 0,964 -chrXIII 393157 394895 HC_gene_6649_tx_5 1 + 393157 394895 . 1 1739 0 -chrXIII 394874 396396 HC_gene_7002_tx_1 6 - 394874 396396 . 1 1523 0 -chrXIII 394940 396065 HC_gene_7002_tx_8 25 - 394940 396065 . 1 1126 0 -chrXIII 394940 396396 HC_gene_7002_tx_2 196 - 394940 396396 . 1 1457 0 -chrXIII 394940 396396 HC_gene_7002_tx_3 1 - 394940 396396 . 2 733,657 0,800 -chrXIII 394940 396396 HC_gene_7002_tx_4 1 - 394940 396396 . 2 1003,237 0,1220 -chrXIII 394940 396396 HC_gene_7002_tx_5 1 - 394940 396396 . 2 588,807 0,650 -chrXIII 394940 396396 HC_gene_7002_tx_6 1 - 394940 396396 . 2 877,504 0,953 -chrXIII 394940 396396 HC_gene_7002_tx_7 1 - 394940 396396 . 2 828,527 0,930 -chrXIII 396773 397730 LC_gene_7003_tx_1 1 - 396773 397730 . 1 958 0 -chrXIII 397013 399586 HC_gene_6650_tx_1 2 + 397013 399586 . 1 2574 0 -chrXIII 397013 399678 HC_gene_6650_tx_2 3 + 397013 399678 . 1 2666 0 -chrXIII 397929 398782 HC_gene_6650_tx_3 1 + 397929 398782 . 1 854 0 -chrXIII 397929 399339 HC_gene_6650_tx_4 1 + 397929 399339 . 1 1411 0 -chrXIII 397929 399586 HC_gene_6650_tx_5 11 + 397929 399586 . 1 1658 0 -chrXIII 397929 399678 HC_gene_6650_tx_6 6 + 397929 399678 . 1 1750 0 -chrXIII 398517 399247 MC_gene_7004_tx_1 1 - 398517 399247 . 1 731 0 -chrXIII 399447 400080 MC_gene_7005_tx_1 1 - 399447 400080 . 1 634 0 -chrXIII 399878 401352 HC_gene_6651_tx_1 15 + 399878 401352 . 1 1475 0 -chrXIII 399878 401352 HC_gene_6651_tx_2 1 + 399878 401352 . 2 629,594 0,881 -chrXIII 401162 401556 LC_gene_7006_tx_1 1 - 401162 401556 . 1 395 0 -chrXIII 401556 404260 HC_gene_6652_tx_1 1 + 401556 404260 . 2 1870,780 0,1925 -chrXIII 401556 404260 HC_gene_6652_tx_2 3 + 401556 404260 . 1 2705 0 -chrXIII 401556 404260 HC_gene_6652_tx_3 1 + 401556 404260 . 2 1380,1265 0,1440 -chrXIII 401677 404260 HC_gene_6652_tx_4 1 + 401677 404260 . 1 2584 0 -chrXIII 403892 404260 HC_gene_6652_tx_5 3 + 403892 404260 . 1 369 0 -chrXIII 404235 405053 HC_gene_7007_tx_1 3 - 404235 405053 . 1 819 0 -chrXIII 404235 405053 HC_gene_7007_tx_2 1 - 404235 405053 . 2 383,357 0,462 -chrXIII 404235 405262 HC_gene_7007_tx_4 2 - 404235 405262 . 1 1028 0 -chrXIII 404235 405601 HC_gene_7007_tx_6 17 - 404235 405601 . 1 1367 0 -chrXIII 404235 406141 HC_gene_7007_tx_8 1 - 404235 406141 . 1 1907 0 -chrXIII 404294 405053 HC_gene_7007_tx_3 3 - 404294 405053 . 1 760 0 -chrXIII 404294 405262 HC_gene_7007_tx_5 9 - 404294 405262 . 1 969 0 -chrXIII 404294 405601 HC_gene_7007_tx_7 15 - 404294 405601 . 1 1308 0 -chrXIII 404294 406141 HC_gene_7007_tx_9 1 - 404294 406141 . 1 1848 0 -chrXIII 405736 407678 HC_gene_6653_tx_1 1 + 405736 407678 . 1 1943 0 -chrXIII 406294 407678 HC_gene_6653_tx_2 5 + 406294 407678 . 1 1385 0 -chrXIII 407563 408598 MC_gene_7008_tx_1 1 - 407563 408598 . 1 1036 0 -chrXIII 407782 409482 HC_gene_6654_tx_1 1 + 407782 409482 . 1 1701 0 -chrXIII 407782 410781 HC_gene_6654_tx_2 2 + 407782 410781 . 1 3000 0 -chrXIII 408493 408819 MC_gene_7009_tx_1 1 - 408493 408819 . 1 327 0 -chrXIII 408954 409482 HC_gene_6654_tx_3 11 + 408954 409482 . 1 529 0 -chrXIII 408954 410665 HC_gene_6654_tx_4 6 + 408954 410665 . 1 1712 0 -chrXIII 408954 410781 HC_gene_6654_tx_5 8 + 408954 410781 . 1 1828 0 -chrXIII 409135 409482 HC_gene_6654_tx_9 1 + 409135 409482 . 1 348 0 -chrXIII 409135 410665 HC_gene_6654_tx_6 6 + 409135 410665 . 1 1531 0 -chrXIII 409341 410314 MC_gene_7010_tx_1 1 - 409341 410314 . 1 974 0 -chrXIII 409379 410665 HC_gene_6654_tx_7 1 + 409379 410665 . 1 1287 0 -chrXIII 409379 410781 HC_gene_6654_tx_8 3 + 409379 410781 . 1 1403 0 -chrXIII 409925 410665 HC_gene_6654_tx_10 9 + 409925 410665 . 1 741 0 -chrXIII 409925 410781 HC_gene_6654_tx_11 4 + 409925 410781 . 1 857 0 -chrXIII 409925 410781 HC_gene_6654_tx_12 1 + 409925 410781 . 2 123,679 0,178 -chrXIII 410563 410665 HC_gene_6654_tx_13 1 + 410563 410665 . 1 103 0 -chrXIII 410563 410781 HC_gene_6654_tx_14 3 + 410563 410781 . 1 219 0 -chrXIII 410692 411078 HC_gene_7011_tx_1 38 - 410692 411078 . 1 387 0 -chrXIII 410692 411324 HC_gene_7011_tx_2 340 - 410692 411324 . 1 633 0 -chrXIII 411546 412264 HC_gene_6655_tx_1 676 + 411546 412264 . 1 719 0 -chrXIII 411546 412397 HC_gene_6655_tx_2 7 + 411546 412397 . 1 852 0 -chrXIII 411802 412900 HC_gene_7012_tx_1 10 - 411802 412900 . 1 1099 0 -chrXIII 411803 412264 HC_gene_6655_tx_3 49 + 411803 412264 . 1 462 0 -chrXIII 411884 412264 HC_gene_6655_tx_4 90 + 411884 412264 . 1 381 0 -chrXIII 411919 412900 HC_gene_7012_tx_2 2 - 411919 412900 . 1 982 0 -chrXIII 412024 412900 HC_gene_7012_tx_3 23 - 412024 412900 . 1 877 0 -chrXIII 412118 412900 HC_gene_7012_tx_4 2 - 412118 412900 . 1 783 0 -chrXIII 412195 412900 HC_gene_7012_tx_5 44 - 412195 412900 . 1 706 0 -chrXIII 412410 412988 LC_gene_6656_tx_1 1 + 412410 412988 . 1 579 0 -chrXIII 412964 413367 HC_gene_7013_tx_1 20 - 412964 413367 . 1 404 0 -chrXIII 412964 413459 HC_gene_7013_tx_2 1 - 412964 413459 . 1 496 0 -chrXIII 412964 413460 HC_gene_7013_tx_3 1 - 412964 413460 . 1 497 0 -chrXIII 412964 413463 HC_gene_7013_tx_4 1 - 412964 413463 . 1 500 0 -chrXIII 412964 413465 HC_gene_7013_tx_5 1 - 412964 413465 . 1 502 0 -chrXIII 412964 413467 HC_gene_7013_tx_6 2 - 412964 413467 . 1 504 0 -chrXIII 412964 413472 HC_gene_7013_tx_7 1 - 412964 413472 . 1 509 0 -chrXIII 412964 413473 HC_gene_7013_tx_8 3 - 412964 413473 . 1 510 0 -chrXIII 412964 413478 HC_gene_7013_tx_9 1 - 412964 413478 . 1 515 0 -chrXIII 412964 413484 HC_gene_7013_tx_10 378 - 412964 413484 . 1 521 0 -chrXIII 413111 413811 HC_gene_6657_tx_1 22 + 413111 413811 . 1 701 0 -chrXIII 413112 413811 HC_gene_6657_tx_2 1 + 413112 413811 . 1 700 0 -chrXIII 413121 413811 HC_gene_6657_tx_3 1 + 413121 413811 . 1 691 0 -chrXIII 413815 416150 HC_gene_6658_tx_1 7 + 413815 416150 . 1 2336 0 -chrXIII 413815 416150 HC_gene_6658_tx_2 1 + 413815 416150 . 3 717,327,1131 0,800,1205 -chrXIII 413929 416150 HC_gene_6658_tx_3 1 + 413929 416150 . 2 69,1867 0,355 -chrXIII 413929 416150 HC_gene_6658_tx_4 2 + 413929 416150 . 1 2222 0 -chrXIII 413929 416150 HC_gene_6658_tx_5 1 + 413929 416150 . 2 1229,935 0,1287 -chrXIII 414726 416150 HC_gene_6658_tx_6 5 + 414726 416150 . 1 1425 0 -chrXIII 415344 416150 HC_gene_6658_tx_7 4 + 415344 416150 . 1 807 0 -chrXIII 416068 416574 HC_gene_7014_tx_1 7 - 416068 416574 . 1 507 0 -chrXIII 416068 416730 HC_gene_7014_tx_2 7 - 416068 416730 . 1 663 0 -chrXIII 416068 416802 HC_gene_7014_tx_3 2 - 416068 416802 . 1 735 0 -chrXIII 416068 420109 HC_gene_7014_tx_4 1 - 416068 420109 . 1 4042 0 -chrXIII 420415 420655 MC_gene_7015_tx_1 1 - 420415 420655 . 1 241 0 -chrXIII 421050 421445 MC_gene_6659_tx_1 1 + 421050 421445 . 1 396 0 -chrXIII 421188 422236 HC_gene_7016_tx_1 2 - 421188 422236 . 1 1049 0 -chrXIII 421335 421915 HC_gene_7016_tx_4 7 - 421335 421915 . 1 581 0 -chrXIII 421335 422236 HC_gene_7016_tx_2 38 - 421335 422236 . 1 902 0 -chrXIII 421433 421915 HC_gene_7016_tx_5 2 - 421433 421915 . 1 483 0 -chrXIII 421433 422236 HC_gene_7016_tx_3 6 - 421433 422236 . 1 804 0 -chrXIII 422362 424736 HC_gene_7017_tx_1 17 - 422362 424736 . 1 2375 0 -chrXIII 422362 424736 HC_gene_7017_tx_2 1 - 422362 424736 . 2 683,1626 0,749 -chrXIII 422384 423439 MC_gene_6660_tx_1 1 + 422384 423439 . 1 1056 0 -chrXIII 423334 424736 HC_gene_7017_tx_3 1 - 423334 424736 . 1 1403 0 -chrXIII 424953 426311 HC_gene_6661_tx_1 34 + 424953 426311 . 2 45,1158 0,201 -chrXIII 424953 426311 HC_gene_6661_tx_2 1 + 424953 426311 . 2 45,1187 0,172 -chrXIII 424953 426311 HC_gene_6661_tx_3 5 + 424953 426311 . 1 1359 0 -chrXIII 424953 426394 HC_gene_6661_tx_4 14 + 424953 426394 . 2 45,1241 0,201 -chrXIII 424953 426394 HC_gene_6661_tx_5 3 + 424953 426394 . 1 1442 0 -chrXIII 424953 426394 HC_gene_6661_tx_6 1 + 424953 426394 . 2 381,961 0,481 -chrXIII 425250 426311 HC_gene_6661_tx_7 26 + 425250 426311 . 1 1062 0 -chrXIII 425250 426394 HC_gene_6661_tx_8 19 + 425250 426394 . 1 1145 0 -chrXIII 425391 426311 HC_gene_6661_tx_9 17 + 425391 426311 . 1 921 0 -chrXIII 425391 426394 HC_gene_6661_tx_10 15 + 425391 426394 . 1 1004 0 -chrXIII 425730 426311 HC_gene_6661_tx_11 12 + 425730 426311 . 1 582 0 -chrXIII 425730 426394 HC_gene_6661_tx_12 26 + 425730 426394 . 1 665 0 -chrXIII 426028 426311 HC_gene_6661_tx_13 4 + 426028 426311 . 1 284 0 -chrXIII 426028 426394 HC_gene_6661_tx_14 13 + 426028 426394 . 1 367 0 -chrXIII 426244 429707 HC_gene_7018_tx_1 1 - 426244 429707 . 1 3464 0 -chrXIII 426251 429707 HC_gene_7018_tx_2 1 - 426251 429707 . 1 3457 0 -chrXIII 426261 429707 HC_gene_7018_tx_3 1 - 426261 429707 . 1 3447 0 -chrXIII 426288 429707 HC_gene_7018_tx_4 1 - 426288 429707 . 1 3420 0 -chrXIII 426292 429707 HC_gene_7018_tx_5 1 - 426292 429707 . 1 3416 0 -chrXIII 426293 429707 HC_gene_7018_tx_6 1 - 426293 429707 . 1 3415 0 -chrXIII 426294 429707 HC_gene_7018_tx_7 1 - 426294 429707 . 1 3414 0 -chrXIII 426296 429527 HC_gene_7018_tx_8 1 - 426296 429527 . 1 3232 0 -chrXIII 426305 429707 HC_gene_7018_tx_9 1 - 426305 429707 . 1 3403 0 -chrXIII 429890 430367 MC_gene_7019_tx_1 1 - 429890 430367 . 1 478 0 -chrXIII 429895 431234 MC_gene_7020_tx_1 1 - 429895 431234 . 1 1340 0 -chrXIII 429899 430676 MC_gene_7020_tx_2 1 - 429899 430676 . 1 778 0 -chrXIII 429947 431226 HC_gene_6662_tx_1 1 + 429947 431226 . 1 1280 0 -chrXIII 430145 431226 HC_gene_6662_tx_2 2 + 430145 431226 . 1 1082 0 -chrXIII 430145 431324 HC_gene_6662_tx_3 1 + 430145 431324 . 1 1180 0 -chrXIII 430145 431455 HC_gene_6662_tx_4 1 + 430145 431455 . 1 1311 0 -chrXIII 432085 432495 MC_gene_6663_tx_1 1 + 432085 432495 . 1 411 0 -chrXIII 432150 432518 MC_gene_6664_tx_1 1 + 432150 432518 . 1 369 0 -chrXIII 432339 433189 MC_gene_6665_tx_1 1 + 432339 433189 . 1 851 0 -chrXIII 433088 433541 HC_gene_7021_tx_1 4 - 433088 433541 . 1 454 0 -chrXIII 433566 434020 MC_gene_7022_tx_1 1 - 433566 434020 . 1 455 0 -chrXIII 434112 434754 HC_gene_6666_tx_1 1 + 434112 434754 . 1 643 0 -chrXIII 434178 434754 HC_gene_6666_tx_2 1 + 434178 434754 . 1 577 0 -chrXIII 434196 434754 HC_gene_6666_tx_3 1 + 434196 434754 . 1 559 0 -chrXIII 434205 434754 HC_gene_6666_tx_4 1 + 434205 434754 . 1 550 0 -chrXIII 434756 436035 HC_gene_6667_tx_1 514 + 434756 436035 . 1 1280 0 -chrXIII 434756 436035 HC_gene_6667_tx_2 1 + 434756 436035 . 2 40,651 0,629 -chrXIII 434756 436035 HC_gene_6667_tx_3 1 + 434756 436035 . 2 1139,87 0,1193 -chrXIII 434756 436035 HC_gene_6667_tx_4 1 + 434756 436035 . 2 759,467 0,813 -chrXIII 434756 436035 HC_gene_6667_tx_5 1 + 434756 436035 . 2 624,569 0,711 -chrXIII 434756 436035 HC_gene_6667_tx_6 1 + 434756 436035 . 2 138,974 0,306 -chrXIII 434756 436035 HC_gene_6667_tx_7 1 + 434756 436035 . 2 1131,78 0,1202 -chrXIII 434756 436035 HC_gene_6667_tx_8 1 + 434756 436035 . 2 1073,78 0,1202 -chrXIII 434756 436035 HC_gene_6667_tx_9 1 + 434756 436035 . 2 1097,117 0,1163 -chrXIII 434756 436035 HC_gene_6667_tx_10 1 + 434756 436035 . 2 103,741 0,539 -chrXIII 434756 436035 HC_gene_6667_tx_11 1 + 434756 436035 . 2 381,671 0,609 -chrXIII 434756 436164 HC_gene_6667_tx_12 6 + 434756 436164 . 1 1409 0 -chrXIII 434756 436164 HC_gene_6667_tx_13 1 + 434756 436164 . 2 423,420 0,989 -chrXIII 435154 436035 HC_gene_6667_tx_14 65 + 435154 436035 . 1 882 0 -chrXIII 435154 436164 HC_gene_6667_tx_15 1 + 435154 436164 . 1 1011 0 -chrXIII 435346 436035 HC_gene_6667_tx_16 1 + 435346 436035 . 2 38,579 0,111 -chrXIII 435412 436035 HC_gene_6667_tx_17 98 + 435412 436035 . 1 624 0 -chrXIII 435412 436164 HC_gene_6667_tx_18 1 + 435412 436164 . 1 753 0 -chrXIII 435515 436035 HC_gene_6667_tx_19 71 + 435515 436035 . 1 521 0 -chrXIII 435515 436164 HC_gene_6667_tx_20 2 + 435515 436164 . 1 650 0 -chrXIII 435676 436035 HC_gene_6667_tx_21 77 + 435676 436035 . 1 360 0 -chrXIII 435676 436164 HC_gene_6667_tx_22 1 + 435676 436164 . 1 489 0 -chrXIII 435939 436515 LC_gene_7023_tx_1 1 - 435939 436515 . 1 577 0 -chrXIII 436316 438884 HC_gene_6668_tx_1 1 + 436316 438884 . 1 2569 0 -chrXIII 441026 442234 HC_gene_6669_tx_1 3 + 441026 442234 . 1 1209 0 -chrXIII 441242 442234 HC_gene_6669_tx_2 3 + 441242 442234 . 1 993 0 -chrXIII 441306 442234 HC_gene_6669_tx_3 2 + 441306 442234 . 1 929 0 -chrXIII 441306 442312 HC_gene_6669_tx_4 1 + 441306 442312 . 1 1007 0 -chrXIII 442048 443165 HC_gene_7024_tx_1 4 - 442048 443165 . 1 1118 0 -chrXIII 442512 442852 HC_gene_6670_tx_1 1 + 442512 442852 . 1 341 0 -chrXIII 443202 445197 HC_gene_7025_tx_1 1 - 443202 445197 . 1 1996 0 -chrXIII 443299 444627 HC_gene_7025_tx_6 6 - 443299 444627 . 1 1329 0 -chrXIII 443299 445125 HC_gene_7025_tx_2 2 - 443299 445125 . 1 1827 0 -chrXIII 443299 445197 HC_gene_7025_tx_3 40 - 443299 445197 . 1 1899 0 -chrXIII 443299 445197 HC_gene_7025_tx_4 1 - 443299 445197 . 2 846,985 0,914 -chrXIII 443299 445197 HC_gene_7025_tx_5 1 - 443299 445197 . 2 846,959 0,940 -chrXIII 443379 445489 MC_gene_6671_tx_1 1 + 443379 445489 . 1 2111 0 -chrXIII 445399 445899 HC_gene_7026_tx_1 9 - 445399 445899 . 1 501 0 -chrXIII 445399 445950 HC_gene_7026_tx_2 23 - 445399 445950 . 1 552 0 -chrXIII 445399 446076 HC_gene_7026_tx_3 14 - 445399 446076 . 1 678 0 -chrXIII 445399 446879 HC_gene_7026_tx_4 8 - 445399 446879 . 1 1481 0 -chrXIII 445399 447113 HC_gene_7026_tx_5 2 - 445399 447113 . 1 1715 0 -chrXIII 445399 447113 HC_gene_7026_tx_6 1 - 445399 447113 . 2 644,948 0,767 -chrXIII 445399 447879 HC_gene_7026_tx_7 4 - 445399 447879 . 1 2481 0 -chrXIII 445399 447879 HC_gene_7026_tx_8 1 - 445399 447879 . 2 1950,312 0,2169 -chrXIII 445399 448134 HC_gene_7026_tx_9 1 - 445399 448134 . 1 2736 0 -chrXIII 445399 448286 HC_gene_7026_tx_10 15 - 445399 448286 . 1 2888 0 -chrXIII 445399 448286 HC_gene_7026_tx_11 1 - 445399 448286 . 2 2233,462 0,2426 -chrXIII 448459 450062 HC_gene_6672_tx_1 2 + 448459 450062 . 1 1604 0 -chrXIII 448671 450062 HC_gene_6672_tx_2 1 + 448671 450062 . 1 1392 0 -chrXIII 448671 450062 HC_gene_6672_tx_3 1 + 448671 450062 . 2 375,890 0,502 -chrXIII 449131 450062 HC_gene_6672_tx_4 2 + 449131 450062 . 1 932 0 -chrXIII 449201 450062 HC_gene_6672_tx_5 11 + 449201 450062 . 1 862 0 -chrXIII 449494 450062 HC_gene_6672_tx_6 6 + 449494 450062 . 1 569 0 -chrXIII 449606 450062 HC_gene_6672_tx_7 1 + 449606 450062 . 1 457 0 -chrXIII 449881 451423 HC_gene_7027_tx_1 4 - 449881 451423 . 1 1543 0 -chrXIII 449985 450657 HC_gene_7027_tx_9 12 - 449985 450657 . 1 673 0 -chrXIII 449985 450842 HC_gene_7027_tx_10 16 - 449985 450842 . 1 858 0 -chrXIII 449985 451423 HC_gene_7027_tx_2 81 - 449985 451423 . 1 1439 0 -chrXIII 449985 451423 HC_gene_7027_tx_3 1 - 449985 451423 . 2 1141,149 0,1290 -chrXIII 449985 451423 HC_gene_7027_tx_4 1 - 449985 451423 . 2 632,671 0,768 -chrXIII 449985 451423 HC_gene_7027_tx_5 1 - 449985 451423 . 2 625,746 0,693 -chrXIII 449985 451423 HC_gene_7027_tx_6 1 - 449985 451423 . 2 446,952 0,487 -chrXIII 449985 451423 HC_gene_7027_tx_7 1 - 449985 451423 . 2 787,312 0,1127 -chrXIII 449985 451423 HC_gene_7027_tx_8 1 - 449985 451423 . 2 637,671 0,768 -chrXIII 451515 452648 HC_gene_7028_tx_1 8 - 451515 452648 . 1 1134 0 -chrXIII 451515 452648 HC_gene_7028_tx_2 1 - 451515 452648 . 2 529,495 0,639 -chrXIII 451515 453096 HC_gene_7028_tx_3 4 - 451515 453096 . 1 1582 0 -chrXIII 451515 453561 HC_gene_7028_tx_4 43 - 451515 453561 . 1 2047 0 -chrXIII 451515 453561 HC_gene_7028_tx_5 1 - 451515 453561 . 2 999,970 0,1077 -chrXIII 451515 453750 HC_gene_7028_tx_6 1 - 451515 453750 . 1 2236 0 -chrXIII 453964 455665 HC_gene_6673_tx_1 43 + 453964 455665 . 1 1702 0 -chrXIII 453964 455665 HC_gene_6673_tx_2 1 + 453964 455665 . 2 1201,429 0,1273 -chrXIII 453964 455665 HC_gene_6673_tx_3 1 + 453964 455665 . 2 285,1113 0,589 -chrXIII 455797 459445 HC_gene_6674_tx_1 2 + 455797 459445 . 1 3649 0 -chrXIII 455797 459445 HC_gene_6674_tx_2 1 + 455797 459445 . 2 1026,2492 0,1157 -chrXIII 456969 457582 HC_gene_7029_tx_1 3 - 456969 457582 . 1 614 0 -chrXIII 458378 459445 HC_gene_6674_tx_3 325 + 458378 459445 . 1 1068 0 -chrXIII 458378 459445 HC_gene_6674_tx_4 1 + 458378 459445 . 2 337,631 0,437 -chrXIII 458378 459445 HC_gene_6674_tx_5 1 + 458378 459445 . 2 184,773 0,295 -chrXIII 458378 459445 HC_gene_6674_tx_6 1 + 458378 459445 . 2 398,598 0,470 -chrXIII 458378 459445 HC_gene_6674_tx_7 1 + 458378 459445 . 2 72,644 0,424 -chrXIII 458378 459445 HC_gene_6674_tx_8 1 + 458378 459445 . 2 58,956 0,112 -chrXIII 458378 459445 HC_gene_6674_tx_9 1 + 458378 459445 . 2 69,555 0,513 -chrXIII 458378 459445 HC_gene_6674_tx_10 1 + 458378 459445 . 2 239,587 0,481 -chrXIII 458378 459445 HC_gene_6674_tx_11 1 + 458378 459445 . 2 937,51 0,1017 -chrXIII 458378 459445 HC_gene_6674_tx_12 1 + 458378 459445 . 2 316,437 0,631 -chrXIII 459358 460558 HC_gene_7030_tx_1 26 - 459358 460558 . 1 1201 0 -chrXIII 460728 462496 HC_gene_7031_tx_1 4 - 460728 462496 . 1 1769 0 -chrXIII 460728 462687 HC_gene_7031_tx_2 13 - 460728 462687 . 1 1960 0 -chrXIII 460737 462023 MC_gene_6675_tx_1 1 + 460737 462023 . 1 1287 0 -chrXIII 462799 463285 HC_gene_6676_tx_1 5 + 462799 463285 . 1 487 0 -chrXIII 462809 463420 MC_gene_7032_tx_1 1 - 462809 463420 . 1 612 0 -chrXIII 463134 463658 MC_gene_7033_tx_1 1 - 463134 463658 . 1 525 0 -chrXIII 463573 463845 LC_gene_6677_tx_1 1 + 463573 463845 . 1 273 0 -chrXIII 463670 464657 HC_gene_7034_tx_1 3 - 463670 464657 . 1 988 0 -chrXIII 463670 464851 HC_gene_7034_tx_2 24 - 463670 464851 . 1 1182 0 -chrXIII 463846 464557 HC_gene_7034_tx_3 17 - 463846 464557 . 1 712 0 -chrXIII 463846 464657 HC_gene_7034_tx_4 26 - 463846 464657 . 1 812 0 -chrXIII 463846 464851 HC_gene_7034_tx_5 166 - 463846 464851 . 1 1006 0 -chrXIII 465032 465438 HC_gene_6678_tx_1 33 + 465032 465438 . 1 407 0 -chrXIII 465138 465658 HC_gene_7035_tx_1 2 - 465138 465658 . 1 521 0 -chrXIII 465326 465658 HC_gene_7035_tx_2 1 - 465326 465658 . 1 333 0 -chrXIII 465787 466220 LC_gene_7036_tx_1 1 - 465787 466220 . 1 434 0 -chrXIII 465945 466776 HC_gene_6679_tx_1 2 + 465945 466776 . 1 832 0 -chrXIII 466462 467106 HC_gene_6680_tx_1 1 + 466462 467106 . 1 645 0 -chrXIII 467945 468401 HC_gene_6681_tx_1 7 + 467945 468401 . 1 457 0 -chrXIII 468011 468401 HC_gene_6681_tx_2 5 + 468011 468401 . 1 391 0 -chrXIII 468247 469030 MC_gene_7037_tx_1 1 - 468247 469030 . 1 784 0 -chrXIII 469692 470844 HC_gene_7038_tx_1 22 - 469692 470844 . 1 1153 0 -chrXIII 469692 471236 HC_gene_7038_tx_2 1 - 469692 471236 . 2 1200,299 0,1246 -chrXIII 469692 471236 HC_gene_7038_tx_3 1 - 469692 471236 . 2 1013,386 0,1159 -chrXIII 469692 471236 HC_gene_7038_tx_4 15 - 469692 471236 . 1 1545 0 -chrXIII 469692 471236 HC_gene_7038_tx_5 1 - 469692 471236 . 2 445,1012 0,533 -chrXIII 469692 471236 HC_gene_7038_tx_6 1 - 469692 471236 . 2 445,1040 0,505 -chrXIII 469692 472263 HC_gene_7038_tx_7 3 - 469692 472263 . 1 2572 0 -chrXIII 469692 472460 HC_gene_7038_tx_8 17 - 469692 472460 . 1 2769 0 -chrXIII 469692 472460 HC_gene_7038_tx_9 1 - 469692 472460 . 2 1509,1169 0,1600 -chrXIII 469692 472696 HC_gene_7038_tx_10 63 - 469692 472696 . 1 3005 0 -chrXIII 469692 472696 HC_gene_7038_tx_11 1 - 469692 472696 . 2 461,2394 0,611 -chrXIII 469692 472696 HC_gene_7038_tx_12 1 - 469692 472696 . 2 697,2246 0,759 -chrXIII 469692 472696 HC_gene_7038_tx_13 1 - 469692 472696 . 2 2762,109 0,2896 -chrXIII 469692 472696 HC_gene_7038_tx_14 1 - 469692 472696 . 2 1823,1106 0,1899 -chrXIII 469692 472696 HC_gene_7038_tx_15 1 - 469692 472696 . 2 1536,1405 0,1600 -chrXIII 472730 474397 HC_gene_7039_tx_1 4 - 472730 474397 . 1 1668 0 -chrXIII 472730 474397 HC_gene_7039_tx_2 1 - 472730 474397 . 2 708,801 0,867 -chrXIII 472730 475261 HC_gene_7039_tx_3 1 - 472730 475261 . 1 2532 0 -chrXIII 472730 475523 HC_gene_7039_tx_4 13 - 472730 475523 . 1 2794 0 -chrXIII 473329 473659 MC_gene_6682_tx_1 1 + 473329 473659 . 1 331 0 -chrXIII 475443 475832 MC_gene_6683_tx_1 1 + 475443 475832 . 1 390 0 -chrXIII 475746 476222 HC_gene_7040_tx_1 17 - 475746 476222 . 1 477 0 -chrXIII 475746 476439 HC_gene_7040_tx_2 12 - 475746 476439 . 1 694 0 -chrXIII 475746 477193 HC_gene_7040_tx_3 11 - 475746 477193 . 1 1448 0 -chrXIII 475746 477270 HC_gene_7040_tx_4 5 - 475746 477270 . 1 1525 0 -chrXIII 475746 477456 HC_gene_7040_tx_5 3 - 475746 477456 . 1 1711 0 -chrXIII 475746 477552 HC_gene_7040_tx_6 3 - 475746 477552 . 1 1807 0 -chrXIII 475746 477666 HC_gene_7040_tx_7 33 - 475746 477666 . 1 1921 0 -chrXIII 475746 478739 HC_gene_7040_tx_8 2 - 475746 478739 . 1 2994 0 -chrXIII 475746 480231 HC_gene_7040_tx_9 1 - 475746 480231 . 2 2680,1625 0,2861 -chrXIII 475746 480496 HC_gene_7040_tx_10 1 - 475746 480496 . 2 3348,1271 0,3480 -chrXIII 475746 480496 HC_gene_7040_tx_11 1 - 475746 480496 . 1 4751 0 -chrXIII 475863 477121 MC_gene_6684_tx_1 1 + 475863 477121 . 1 1259 0 -chrXIII 478034 479060 LC_gene_6685_tx_1 1 + 478034 479060 . 1 1027 0 -chrXIII 478197 478739 HC_gene_7040_tx_12 6 - 478197 478739 . 1 543 0 -chrXIII 478197 480496 HC_gene_7040_tx_13 1 - 478197 480496 . 1 2300 0 -chrXIII 480191 480580 MC_gene_6686_tx_1 1 + 480191 480580 . 1 390 0 -chrXIII 480537 480688 MC_gene_7041_tx_1 1 - 480537 480688 . 1 152 0 -chrXIII 480862 481379 HC_gene_6687_tx_1 144 + 480862 481379 . 1 518 0 -chrXIII 480862 481458 HC_gene_6687_tx_2 7 + 480862 481458 . 1 597 0 -chrXIII 481221 482075 MC_gene_7042_tx_1 1 - 481221 482075 . 1 855 0 -chrXIII 481234 481931 MC_gene_7042_tx_2 1 - 481234 481931 . 1 698 0 -chrXIII 482186 482409 MC_gene_7043_tx_1 1 - 482186 482409 . 1 224 0 -chrXIII 482196 482700 MC_gene_7044_tx_1 1 - 482196 482700 . 1 505 0 -chrXIII 482263 482931 MC_gene_7045_tx_1 1 - 482263 482931 . 1 669 0 -chrXIII 482993 483439 HC_gene_6688_tx_1 1 + 482993 483439 . 1 447 0 -chrXIII 483368 483730 HC_gene_7046_tx_1 1 - 483368 483730 . 1 363 0 -chrXIII 483900 486312 HC_gene_6689_tx_1 154 + 483900 486312 . 1 2413 0 -chrXIII 483900 486312 HC_gene_6689_tx_2 1 + 483900 486312 . 2 70,1432 0,981 -chrXIII 483900 486312 HC_gene_6689_tx_3 1 + 483900 486312 . 2 31,1622 0,791 -chrXIII 483900 486312 HC_gene_6689_tx_4 1 + 483900 486312 . 2 1630,716 0,1697 -chrXIII 483900 486312 HC_gene_6689_tx_5 1 + 483900 486312 . 2 1304,1043 0,1370 -chrXIII 483900 486312 HC_gene_6689_tx_6 1 + 483900 486312 . 3 594,50,973 0,932,1440 -chrXIII 483900 486312 HC_gene_6689_tx_7 1 + 483900 486312 . 2 2265,39 0,2374 -chrXIII 483900 486413 HC_gene_6689_tx_8 2 + 483900 486413 . 1 2514 0 -chrXIII 484056 486312 HC_gene_6689_tx_9 27 + 484056 486312 . 1 2257 0 -chrXIII 484801 486312 HC_gene_6689_tx_10 16 + 484801 486312 . 1 1512 0 -chrXIII 484801 486312 HC_gene_6689_tx_11 1 + 484801 486312 . 2 1309,39 0,1473 -chrXIII 484801 486312 HC_gene_6689_tx_12 1 + 484801 486312 . 2 253,1043 0,469 -chrXIII 484801 486312 HC_gene_6689_tx_13 1 + 484801 486312 . 2 323,827 0,685 -chrXIII 485093 486312 HC_gene_6689_tx_14 31 + 485093 486312 . 1 1220 0 -chrXIII 485413 486312 HC_gene_6689_tx_15 54 + 485413 486312 . 1 900 0 -chrXIII 485660 486312 HC_gene_6689_tx_16 70 + 485660 486312 . 1 653 0 -chrXIII 485660 486413 HC_gene_6689_tx_17 1 + 485660 486413 . 1 754 0 -chrXIII 485914 486312 HC_gene_6689_tx_18 128 + 485914 486312 . 1 399 0 -chrXIII 486182 486503 MC_gene_7047_tx_1 1 - 486182 486503 . 1 322 0 -chrXIII 486545 490329 HC_gene_6690_tx_1 9 + 486545 490329 . 1 3785 0 -chrXIII 486545 490329 HC_gene_6690_tx_2 1 + 486545 490329 . 2 1235,2327 0,1458 -chrXIII 486545 490329 HC_gene_6690_tx_3 1 + 486545 490329 . 2 1530,1737 0,2048 -chrXIII 486545 490329 HC_gene_6690_tx_4 1 + 486545 490329 . 2 2611,1117 0,2668 -chrXIII 487527 490329 HC_gene_6690_tx_5 1 + 487527 490329 . 1 2803 0 -chrXIII 488330 490329 HC_gene_6690_tx_6 5 + 488330 490329 . 1 2000 0 -chrXIII 488330 490329 HC_gene_6690_tx_7 1 + 488330 490329 . 2 72,1056 0,944 -chrXIII 488330 490329 HC_gene_6690_tx_8 1 + 488330 490329 . 2 504,979 0,1021 -chrXIII 488867 490329 HC_gene_6690_tx_9 7 + 488867 490329 . 1 1463 0 -chrXIII 489193 490329 HC_gene_6690_tx_10 4 + 489193 490329 . 1 1137 0 -chrXIII 489368 490329 HC_gene_6690_tx_11 9 + 489368 490329 . 1 962 0 -chrXIII 489458 490329 HC_gene_6690_tx_12 12 + 489458 490329 . 1 872 0 -chrXIII 489579 490329 HC_gene_6690_tx_13 10 + 489579 490329 . 1 751 0 -chrXIII 490320 490674 HC_gene_7048_tx_1 11 - 490320 490674 . 1 355 0 -chrXIII 490320 491605 HC_gene_7048_tx_2 6 - 490320 491605 . 1 1286 0 -chrXIII 490320 491605 HC_gene_7048_tx_3 1 - 490320 491605 . 2 753,163 0,1123 -chrXIII 490320 491667 HC_gene_7048_tx_4 3 - 490320 491667 . 1 1348 0 -chrXIII 490320 492016 HC_gene_7048_tx_5 55 - 490320 492016 . 1 1697 0 -chrXIII 490320 492016 HC_gene_7048_tx_6 1 - 490320 492016 . 2 687,878 0,819 -chrXIII 491032 492371 MC_gene_6691_tx_1 1 + 491032 492371 . 1 1340 0 -chrXIII 492229 493493 HC_gene_7049_tx_1 2 - 492229 493493 . 1 1265 0 -chrXIII 492229 493620 HC_gene_7049_tx_2 2 - 492229 493620 . 1 1392 0 -chrXIII 492229 493697 HC_gene_7049_tx_3 4 - 492229 493697 . 1 1469 0 -chrXIII 492229 493761 HC_gene_7049_tx_4 1 - 492229 493761 . 1 1533 0 -chrXIII 492229 493875 HC_gene_7049_tx_5 11 - 492229 493875 . 1 1647 0 -chrXIII 493661 493984 MC_gene_6692_tx_1 1 + 493661 493984 . 1 324 0 -chrXIII 493676 494092 MC_gene_6693_tx_1 1 + 493676 494092 . 1 417 0 -chrXIII 493917 494263 HC_gene_7050_tx_1 2 - 493917 494263 . 1 347 0 -chrXIII 493917 494467 HC_gene_7050_tx_2 74 - 493917 494467 . 1 551 0 -chrXIII 493917 494616 HC_gene_7050_tx_3 2 - 493917 494616 . 1 700 0 -chrXIII 494579 494867 HC_gene_6694_tx_1 1 + 494579 494867 . 1 289 0 -chrXIII 494784 496163 MC_gene_7051_tx_1 1 - 494784 496163 . 1 1380 0 -chrXIII 494941 496353 HC_gene_6695_tx_1 26 + 494941 496353 . 1 1413 0 -chrXIII 494941 496353 HC_gene_6695_tx_2 1 + 494941 496353 . 2 559,579 0,834 -chrXIII 495523 496353 HC_gene_6695_tx_3 9 + 495523 496353 . 1 831 0 -chrXIII 496271 496594 HC_gene_7052_tx_1 16 - 496271 496594 . 1 324 0 -chrXIII 496271 496737 HC_gene_7052_tx_2 5 - 496271 496737 . 1 467 0 -chrXIII 496271 497480 HC_gene_7052_tx_3 1 - 496271 497480 . 2 726,192 0,1018 -chrXIII 496271 497480 HC_gene_7052_tx_4 3 - 496271 497480 . 1 1210 0 -chrXIII 497678 499326 HC_gene_6696_tx_1 9 + 497678 499326 . 1 1649 0 -chrXIII 499246 499794 HC_gene_7053_tx_1 596 - 499246 499794 . 1 549 0 -chrXIII 499246 499794 HC_gene_7053_tx_2 1 - 499246 499794 . 2 154,335 0,214 -chrXIII 499246 499794 HC_gene_7053_tx_3 1 - 499246 499794 . 2 397,82 0,467 -chrXIII 499246 499794 HC_gene_7053_tx_4 1 - 499246 499794 . 2 172,331 0,218 -chrXIII 499246 499794 HC_gene_7053_tx_5 1 - 499246 499794 . 2 132,328 0,221 -chrXIII 499246 499794 HC_gene_7053_tx_6 1 - 499246 499794 . 2 145,312 0,237 -chrXIII 499246 499794 HC_gene_7053_tx_7 1 - 499246 499794 . 2 168,317 0,232 -chrXIII 499246 499884 HC_gene_7053_tx_8 228 - 499246 499884 . 1 639 0 -chrXIII 499246 500334 HC_gene_7053_tx_9 1 - 499246 500334 . 2 633,163 0,926 -chrXIII 499246 500334 HC_gene_7053_tx_10 159 - 499246 500334 . 2 633,183 0,906 -chrXIII 499246 500334 HC_gene_7053_tx_11 4 - 499246 500334 . 2 633,177 0,912 -chrXIII 499246 500334 HC_gene_7053_tx_12 7 - 499246 500334 . 2 633,187 0,902 -chrXIII 499246 500334 HC_gene_7053_tx_13 5 - 499246 500334 . 1 1089 0 -chrXIII 499246 500334 HC_gene_7053_tx_14 1 - 499246 500334 . 3 93,155,183 0,478,906 -chrXIII 499246 500334 HC_gene_7053_tx_15 1 - 499246 500334 . 2 656,142 0,947 -chrXIII 499246 500457 HC_gene_7053_tx_16 286 - 499246 500457 . 2 633,306 0,906 -chrXIII 499246 500457 HC_gene_7053_tx_17 1 - 499246 500457 . 2 656,280 0,932 -chrXIII 499246 500457 HC_gene_7053_tx_18 6 - 499246 500457 . 2 633,310 0,902 -chrXIII 499246 500457 HC_gene_7053_tx_19 4 - 499246 500457 . 1 1212 0 -chrXIII 499246 500457 HC_gene_7053_tx_20 4 - 499246 500457 . 2 633,300 0,912 -chrXIII 499246 500457 HC_gene_7053_tx_21 1 - 499246 500457 . 2 635,280 0,932 -chrXIII 499246 500457 HC_gene_7053_tx_22 1 - 499246 500457 . 2 633,286 0,926 -chrXIII 499246 500708 HC_gene_7053_tx_23 2184 - 499246 500708 . 2 633,557 0,906 -chrXIII 499246 500708 HC_gene_7053_tx_24 1 - 499246 500708 . 2 363,848 0,615 -chrXIII 499246 500708 HC_gene_7053_tx_25 36 - 499246 500708 . 1 1463 0 -chrXIII 499246 500708 HC_gene_7053_tx_26 54 - 499246 500708 . 2 633,561 0,902 -chrXIII 499246 500708 HC_gene_7053_tx_27 23 - 499246 500708 . 2 633,551 0,912 -chrXIII 499246 500708 HC_gene_7053_tx_28 1 - 499246 500708 . 2 602,561 0,902 -chrXIII 499246 500708 HC_gene_7053_tx_29 4 - 499246 500708 . 2 656,531 0,932 -chrXIII 499246 500708 HC_gene_7053_tx_30 1 - 499246 500708 . 2 602,557 0,906 -chrXIII 499246 500708 HC_gene_7053_tx_31 1 - 499246 500708 . 3 633,141,309 0,906,1154 -chrXIII 499246 500708 HC_gene_7053_tx_32 1 - 499246 500708 . 2 551,249 0,1214 -chrXIII 499246 500708 HC_gene_7053_tx_33 1 - 499246 500708 . 2 624,531 0,932 -chrXIII 499246 500708 HC_gene_7053_tx_34 1 - 499246 500708 . 2 633,537 0,926 -chrXIII 499246 500708 HC_gene_7053_tx_35 1 - 499246 500708 . 3 633,285,221 0,906,1242 -chrXIII 499246 500708 HC_gene_7053_tx_36 1 - 499246 500708 . 2 633,546 0,917 -chrXIII 499246 500708 HC_gene_7053_tx_37 1 - 499246 500708 . 3 168,355,557 0,278,906 -chrXIII 499246 500708 HC_gene_7053_tx_38 1 - 499246 500708 . 2 545,165 0,1298 -chrXIII 499246 500708 HC_gene_7053_tx_39 1 - 499246 500708 . 3 135,429,557 0,204,906 -chrXIII 499246 500708 HC_gene_7053_tx_40 1 - 499246 500708 . 3 135,405,557 0,228,906 -chrXIII 499246 500708 HC_gene_7053_tx_41 1 - 499246 500708 . 2 656,504 0,959 -chrXIII 499246 500708 HC_gene_7053_tx_42 2 - 499246 500708 . 2 618,561 0,902 -chrXIII 499246 500708 HC_gene_7053_tx_43 1 - 499246 500708 . 2 656,748 0,715 -chrXIII 499246 500708 HC_gene_7053_tx_44 1 - 499246 500708 . 3 633,73,432 0,906,1031 -chrXIII 499246 500708 HC_gene_7053_tx_45 1 - 499246 500708 . 3 168,387,557 0,246,906 -chrXIII 499246 500708 HC_gene_7053_tx_46 1 - 499246 500708 . 2 635,516 0,947 -chrXIII 499246 500708 HC_gene_7053_tx_47 1 - 499246 500708 . 3 179,399,557 0,234,906 -chrXIII 499246 500708 HC_gene_7053_tx_48 1 - 499246 500708 . 2 656,516 0,947 -chrXIII 499246 501665 HC_gene_7053_tx_49 1 - 499246 501665 . 2 633,1514 0,906 -chrXIII 499246 501920 HC_gene_7053_tx_50 4 - 499246 501920 . 2 633,1769 0,906 -chrXIII 499246 501920 HC_gene_7053_tx_51 1 - 499246 501920 . 3 633,462,1263 0,906,1412 -chrXIII 499246 501920 HC_gene_7053_tx_52 1 - 499246 501920 . 1 2675 0 -chrXIII 499246 501920 HC_gene_7053_tx_53 1 - 499246 501920 . 3 633,1328,291 0,906,2384 -chrXIII 499246 501920 HC_gene_7053_tx_54 1 - 499246 501920 . 3 633,579,1080 0,906,1595 -chrXIII 499920 500708 HC_gene_7053_tx_55 1 - 499920 500708 . 1 789 0 -chrXIII 500972 501679 MC_gene_6697_tx_1 1 + 500972 501679 . 1 708 0 -chrXIII 501153 501839 MC_gene_6698_tx_1 1 + 501153 501839 . 1 687 0 -chrXIII 502037 503640 MC_gene_7054_tx_1 1 - 502037 503640 . 1 1604 0 -chrXIII 502121 503363 HC_gene_6699_tx_1 9 + 502121 503363 . 1 1243 0 -chrXIII 502121 503451 HC_gene_6699_tx_2 2 + 502121 503451 . 1 1331 0 -chrXIII 502121 503613 HC_gene_6699_tx_3 1 + 502121 503613 . 2 791,560 0,933 -chrXIII 503712 504205 MC_gene_6700_tx_1 1 + 503712 504205 . 1 494 0 -chrXIII 503863 504642 MC_gene_6701_tx_1 1 + 503863 504642 . 2 154,306 0,474 -chrXIII 504519 504883 MC_gene_7055_tx_1 1 - 504519 504883 . 1 365 0 -chrXIII 505112 507344 HC_gene_6702_tx_1 21 + 505112 507344 . 1 2233 0 -chrXIII 505112 507344 HC_gene_6702_tx_2 1 + 505112 507344 . 2 288,897 0,1336 -chrXIII 505112 507415 HC_gene_6702_tx_3 9 + 505112 507415 . 1 2304 0 -chrXIII 505114 506413 LC_gene_7056_tx_1 1 - 505114 506413 . 1 1300 0 -chrXIII 506974 507344 HC_gene_6702_tx_4 6 + 506974 507344 . 1 371 0 -chrXIII 506974 507415 HC_gene_6702_tx_5 4 + 506974 507415 . 1 442 0 -chrXIII 507395 507741 HC_gene_7057_tx_1 55 - 507395 507741 . 1 347 0 -chrXIII 507395 507849 HC_gene_7057_tx_2 95 - 507395 507849 . 1 455 0 -chrXIII 507395 508134 HC_gene_7057_tx_3 22 - 507395 508134 . 1 740 0 -chrXIII 507395 508236 HC_gene_7057_tx_4 37 - 507395 508236 . 1 842 0 -chrXIII 507395 508384 HC_gene_7057_tx_5 20 - 507395 508384 . 1 990 0 -chrXIII 507395 508455 HC_gene_7057_tx_6 11 - 507395 508455 . 1 1061 0 -chrXIII 507395 508533 HC_gene_7057_tx_7 9 - 507395 508533 . 1 1139 0 -chrXIII 507395 508937 HC_gene_7057_tx_8 30 - 507395 508937 . 1 1543 0 -chrXIII 507395 509055 HC_gene_7057_tx_9 16 - 507395 509055 . 1 1661 0 -chrXIII 507395 509172 HC_gene_7057_tx_10 3 - 507395 509172 . 1 1778 0 -chrXIII 507395 509329 HC_gene_7057_tx_11 125 - 507395 509329 . 1 1935 0 -chrXIII 507543 509743 MC_gene_6703_tx_1 1 + 507543 509743 . 1 2201 0 -chrXIII 509680 510006 HC_gene_7058_tx_1 9 - 509680 510006 . 1 327 0 -chrXIII 509680 510376 HC_gene_7058_tx_2 117 - 509680 510376 . 1 697 0 -chrXIII 511270 511816 HC_gene_6704_tx_1 1765 + 511270 511816 . 1 547 0 -chrXIII 511987 512202 HC_gene_6705_tx_1 2 + 511987 512202 . 1 216 0 -chrXIII 512262 513350 MC_gene_7059_tx_1 1 - 512262 513350 . 1 1089 0 -chrXIII 512807 513355 HC_gene_6706_tx_1 6 + 512807 513355 . 1 549 0 -chrXIII 512956 513355 HC_gene_6706_tx_2 32 + 512956 513355 . 1 400 0 -chrXIII 513278 513819 MC_gene_7060_tx_1 1 - 513278 513819 . 1 542 0 -chrXIII 513564 514049 HC_gene_6707_tx_1 299 + 513564 514049 . 1 486 0 -chrXIII 514185 517369 HC_gene_6708_tx_1 2 + 514185 517369 . 1 3185 0 -chrXIII 514430 517369 HC_gene_6708_tx_2 2 + 514430 517369 . 1 2940 0 -chrXIII 516848 517369 HC_gene_6708_tx_3 5 + 516848 517369 . 1 522 0 -chrXIII 517217 517518 MC_gene_7061_tx_1 1 - 517217 517518 . 1 302 0 -chrXIII 517464 520643 HC_gene_6709_tx_1 23 + 517464 520643 . 2 100,2758 0,422 -chrXIII 517464 520643 HC_gene_6709_tx_2 2 + 517464 520643 . 1 3180 0 -chrXIII 517464 520643 HC_gene_6709_tx_3 1 + 517464 520643 . 2 100,2785 0,395 -chrXIII 518524 520643 HC_gene_6709_tx_4 1 + 518524 520643 . 2 1156,887 0,1233 -chrXIII 518524 520643 HC_gene_6709_tx_5 1 + 518524 520643 . 2 1120,943 0,1177 -chrXIII 518524 520643 HC_gene_6709_tx_6 2 + 518524 520643 . 1 2120 0 -chrXIII 519362 520643 HC_gene_6709_tx_7 5 + 519362 520643 . 1 1282 0 -chrXIII 519620 520643 HC_gene_6709_tx_8 6 + 519620 520643 . 1 1024 0 -chrXIII 520670 521612 HC_gene_7062_tx_1 2 - 520670 521612 . 1 943 0 -chrXIII 520670 522020 HC_gene_7062_tx_2 16 - 520670 522020 . 1 1351 0 -chrXIII 520670 523447 HC_gene_7062_tx_3 2 - 520670 523447 . 1 2778 0 -chrXIII 521526 522020 HC_gene_7062_tx_4 2 - 521526 522020 . 1 495 0 -chrXIII 521526 523447 HC_gene_7062_tx_5 1 - 521526 523447 . 1 1922 0 -chrXIII 522112 523447 HC_gene_7062_tx_6 11 - 522112 523447 . 1 1336 0 -chrXIII 522181 522833 HC_gene_6710_tx_1 3 + 522181 522833 . 1 653 0 -chrXIII 522758 523447 HC_gene_7062_tx_7 1 - 522758 523447 . 1 690 0 -chrXIII 523649 527582 HC_gene_6711_tx_1 6 + 523649 527582 . 1 3934 0 -chrXIII 523933 527582 HC_gene_6711_tx_2 1 + 523933 527582 . 1 3650 0 -chrXIII 524379 527582 HC_gene_6711_tx_3 1 + 524379 527582 . 2 1334,1805 0,1399 -chrXIII 524379 527582 HC_gene_6711_tx_4 3 + 524379 527582 . 1 3204 0 -chrXIII 526505 527582 HC_gene_6711_tx_5 5 + 526505 527582 . 1 1078 0 -chrXIII 526876 527464 LC_gene_7063_tx_1 1 - 526876 527464 . 1 589 0 -chrXIII 527763 531937 HC_gene_6712_tx_1 1 + 527763 531937 . 1 4175 0 -chrXIII 527771 531847 HC_gene_6712_tx_2 1 + 527771 531847 . 1 4077 0 -chrXIII 527771 531908 HC_gene_6712_tx_3 1 + 527771 531908 . 1 4138 0 -chrXIII 527771 531910 HC_gene_6712_tx_4 2 + 527771 531910 . 1 4140 0 -chrXIII 527771 531957 HC_gene_6712_tx_5 1 + 527771 531957 . 2 260,3773 0,414 -chrXIII 527771 531969 HC_gene_6712_tx_6 1 + 527771 531969 . 1 4199 0 -chrXIII 527793 531936 HC_gene_6712_tx_7 1 + 527793 531936 . 1 4144 0 -chrXIII 527918 531968 HC_gene_6712_tx_8 1 + 527918 531968 . 1 4051 0 -chrXIII 529729 531908 HC_gene_6712_tx_9 1 + 529729 531908 . 1 2180 0 -chrXIII 529729 531927 HC_gene_6712_tx_10 1 + 529729 531927 . 1 2199 0 -chrXIII 531287 531862 HC_gene_6713_tx_1 1 + 531287 531862 . 1 576 0 -chrXIII 531287 531882 HC_gene_6713_tx_2 1 + 531287 531882 . 1 596 0 -chrXIII 531287 531908 HC_gene_6713_tx_3 1 + 531287 531908 . 1 622 0 -chrXIII 531287 531925 HC_gene_6713_tx_4 2 + 531287 531925 . 1 639 0 -chrXIII 531287 531926 HC_gene_6713_tx_5 2 + 531287 531926 . 1 640 0 -chrXIII 531287 531926 HC_gene_6713_tx_6 1 + 531287 531926 . 2 282,303 0,337 -chrXIII 531287 531927 HC_gene_6713_tx_7 1 + 531287 531927 . 1 641 0 -chrXIII 531287 531971 HC_gene_6713_tx_8 1 + 531287 531971 . 1 685 0 -chrXIII 531408 531877 HC_gene_6713_tx_9 1 + 531408 531877 . 1 470 0 -chrXIII 531408 531897 HC_gene_6713_tx_10 2 + 531408 531897 . 1 490 0 -chrXIII 531408 531909 HC_gene_6713_tx_11 1 + 531408 531909 . 1 502 0 -chrXIII 531408 531914 HC_gene_6713_tx_12 1 + 531408 531914 . 1 507 0 -chrXIII 531408 531953 HC_gene_6713_tx_13 1 + 531408 531953 . 1 546 0 -chrXIII 531408 531967 HC_gene_6713_tx_14 1 + 531408 531967 . 1 560 0 -chrXIII 531408 531971 HC_gene_6713_tx_15 2 + 531408 531971 . 1 564 0 -chrXIII 531649 531903 HC_gene_6713_tx_16 1 + 531649 531903 . 1 255 0 -chrXIII 531649 531904 HC_gene_6713_tx_17 1 + 531649 531904 . 1 256 0 -chrXIII 531649 531914 HC_gene_6713_tx_18 1 + 531649 531914 . 1 266 0 -chrXIII 531649 531918 HC_gene_6713_tx_19 1 + 531649 531918 . 1 270 0 -chrXIII 531649 531926 HC_gene_6713_tx_20 2 + 531649 531926 . 1 278 0 -chrXIII 531649 531927 HC_gene_6713_tx_21 1 + 531649 531927 . 1 279 0 -chrXIII 531649 531971 HC_gene_6713_tx_22 1 + 531649 531971 . 1 323 0 -chrXIII 531649 533165 HC_gene_6713_tx_23 1 + 531649 533165 . 1 1517 0 -chrXIII 531784 532246 HC_gene_7064_tx_1 2 - 531784 532246 . 1 463 0 -chrXIII 531931 533165 HC_gene_6713_tx_24 3 + 531931 533165 . 1 1235 0 -chrXIII 532025 533165 HC_gene_6713_tx_25 84 + 532025 533165 . 1 1141 0 -chrXIII 532409 533165 HC_gene_6713_tx_26 12 + 532409 533165 . 1 757 0 -chrXIII 532507 533165 HC_gene_6713_tx_27 6 + 532507 533165 . 1 659 0 -chrXIII 532507 533165 HC_gene_6713_tx_28 1 + 532507 533165 . 2 447,124 0,535 -chrXIII 532735 533165 HC_gene_6713_tx_29 17 + 532735 533165 . 1 431 0 -chrXIII 533005 533524 HC_gene_7065_tx_1 15 - 533005 533524 . 1 520 0 -chrXIII 533005 533658 HC_gene_7065_tx_2 23 - 533005 533658 . 1 654 0 -chrXIII 533005 533712 HC_gene_7065_tx_3 8 - 533005 533712 . 1 708 0 -chrXIII 533005 533771 HC_gene_7065_tx_4 9 - 533005 533771 . 1 767 0 -chrXIII 533005 533872 HC_gene_7065_tx_5 26 - 533005 533872 . 1 868 0 -chrXIII 533005 534020 HC_gene_7065_tx_6 22 - 533005 534020 . 1 1016 0 -chrXIII 533005 534142 HC_gene_7065_tx_7 15 - 533005 534142 . 1 1138 0 -chrXIII 533005 534414 HC_gene_7065_tx_8 18 - 533005 534414 . 1 1410 0 -chrXIII 533005 534414 HC_gene_7065_tx_9 1 - 533005 534414 . 2 783,318 0,1092 -chrXIII 533005 534764 HC_gene_7065_tx_10 124 - 533005 534764 . 1 1760 0 -chrXIII 533005 534764 HC_gene_7065_tx_11 1 - 533005 534764 . 2 756,928 0,832 -chrXIII 533005 534764 HC_gene_7065_tx_12 1 - 533005 534764 . 2 690,925 0,835 -chrXIII 533005 534764 HC_gene_7065_tx_13 1 - 533005 534764 . 2 594,1091 0,669 -chrXIII 533005 534764 HC_gene_7065_tx_14 1 - 533005 534764 . 2 751,959 0,801 -chrXIII 533005 534764 HC_gene_7065_tx_15 1 - 533005 534764 . 2 771,928 0,832 -chrXIII 533005 534764 HC_gene_7065_tx_16 1 - 533005 534764 . 2 762,925 0,835 -chrXIII 533005 534764 HC_gene_7065_tx_17 1 - 533005 534764 . 2 1276,412 0,1348 -chrXIII 533005 534764 HC_gene_7065_tx_18 1 - 533005 534764 . 2 979,503 0,1257 -chrXIII 533005 534764 HC_gene_7065_tx_19 1 - 533005 534764 . 2 1212,496 0,1264 -chrXIII 533005 534764 HC_gene_7065_tx_20 1 - 533005 534764 . 2 1097,257 0,1503 -chrXIII 533005 535210 HC_gene_7065_tx_21 1 - 533005 535210 . 1 2206 0 -chrXIII 533005 535616 HC_gene_7065_tx_22 3 - 533005 535616 . 1 2612 0 -chrXIII 534721 535210 HC_gene_7065_tx_23 6 - 534721 535210 . 1 490 0 -chrXIII 534721 535616 HC_gene_7065_tx_24 38 - 534721 535616 . 1 896 0 -chrXIII 534721 535616 HC_gene_7065_tx_25 1 - 534721 535616 . 2 619,78 0,818 -chrXIII 534721 535645 HC_gene_7065_tx_26 1 - 534721 535645 . 1 925 0 -chrXIII 534797 535616 HC_gene_7065_tx_27 3 - 534797 535616 . 1 820 0 -chrXIII 534945 535658 HC_gene_6714_tx_1 2 + 534945 535658 . 1 714 0 -chrXIII 534945 535866 HC_gene_6714_tx_2 1 + 534945 535866 . 1 922 0 -chrXIII 535947 537038 MC_gene_7066_tx_1 1 - 535947 537038 . 1 1092 0 -chrXIII 537808 538708 HC_gene_6715_tx_1 36 + 537808 538708 . 1 901 0 -chrXIII 537808 538708 HC_gene_6715_tx_2 1 + 537808 538708 . 2 777,60 0,841 -chrXIII 537808 538708 HC_gene_6715_tx_3 1 + 537808 538708 . 2 806,50 0,851 -chrXIII 537808 538708 HC_gene_6715_tx_4 1 + 537808 538708 . 2 801,60 0,841 -chrXIII 537808 538708 HC_gene_6715_tx_5 1 + 537808 538708 . 3 153,443,66 0,334,835 -chrXIII 537808 538708 HC_gene_6715_tx_6 1 + 537808 538708 . 2 807,54 0,847 -chrXIII 537808 538708 HC_gene_6715_tx_7 1 + 537808 538708 . 2 795,58 0,843 -chrXIII 537808 538708 HC_gene_6715_tx_8 1 + 537808 538708 . 2 800,58 0,843 -chrXIII 537808 538708 HC_gene_6715_tx_9 1 + 537808 538708 . 2 777,68 0,833 -chrXIII 538410 538708 HC_gene_6715_tx_10 6 + 538410 538708 . 1 299 0 -chrXIII 538563 539612 HC_gene_7067_tx_1 3 - 538563 539612 . 1 1050 0 -chrXIII 538563 540110 HC_gene_7067_tx_2 21 - 538563 540110 . 1 1548 0 -chrXIII 538563 540110 HC_gene_7067_tx_3 1 - 538563 540110 . 2 63,1430 0,118 -chrXIII 538563 540110 HC_gene_7067_tx_4 1 - 538563 540110 . 2 69,1430 0,118 -chrXIII 538563 540625 HC_gene_7067_tx_5 1 - 538563 540625 . 1 2063 0 -chrXIII 540995 542953 HC_gene_6716_tx_1 4 + 540995 542953 . 1 1959 0 -chrXIII 541192 542953 HC_gene_6716_tx_2 20 + 541192 542953 . 1 1762 0 -chrXIII 541192 542953 HC_gene_6716_tx_3 1 + 541192 542953 . 2 603,772 0,990 -chrXIII 541384 542953 HC_gene_6716_tx_4 9 + 541384 542953 . 1 1570 0 -chrXIII 542849 544881 HC_gene_7068_tx_1 1 - 542849 544881 . 1 2033 0 -chrXIII 542849 544992 HC_gene_7068_tx_2 7 - 542849 544992 . 1 2144 0 -chrXIII 542849 544992 HC_gene_7068_tx_3 1 - 542849 544992 . 2 1346,434 0,1710 -chrXIII 545155 545799 HC_gene_6717_tx_1 23 + 545155 545799 . 1 645 0 -chrXIII 545155 545969 HC_gene_6717_tx_2 1 + 545155 545969 . 1 815 0 -chrXIII 545155 547473 HC_gene_6717_tx_3 1 + 545155 547473 . 2 126,1557 0,762 -chrXIII 545201 545573 LC_gene_7069_tx_1 1 - 545201 545573 . 1 373 0 -chrXIII 545933 547338 HC_gene_6717_tx_4 1 + 545933 547338 . 1 1406 0 -chrXIII 545933 547341 HC_gene_6717_tx_5 1 + 545933 547341 . 1 1409 0 -chrXIII 545933 547345 HC_gene_6717_tx_6 1 + 545933 547345 . 1 1413 0 -chrXIII 545933 547347 HC_gene_6717_tx_7 3 + 545933 547347 . 1 1415 0 -chrXIII 545933 547349 HC_gene_6717_tx_8 2 + 545933 547349 . 1 1417 0 -chrXIII 545933 547353 HC_gene_6717_tx_9 1 + 545933 547353 . 1 1421 0 -chrXIII 545933 547354 HC_gene_6717_tx_10 3 + 545933 547354 . 1 1422 0 -chrXIII 545933 547473 HC_gene_6717_tx_11 26 + 545933 547473 . 1 1541 0 -chrXIII 546104 547473 HC_gene_6717_tx_12 1 + 546104 547473 . 1 1370 0 -chrXIII 546764 547337 HC_gene_6717_tx_13 1 + 546764 547337 . 1 574 0 -chrXIII 546764 547354 HC_gene_6717_tx_14 1 + 546764 547354 . 1 591 0 -chrXIII 546764 547473 HC_gene_6717_tx_15 3 + 546764 547473 . 1 710 0 -chrXIII 547661 550024 HC_gene_6718_tx_1 9 + 547661 550024 . 1 2364 0 -chrXIII 549281 549504 HC_gene_6718_tx_2 1 + 549281 549504 . 1 224 0 -chrXIII 549281 549669 HC_gene_6718_tx_3 1 + 549281 549669 . 1 389 0 -chrXIII 549281 550024 HC_gene_6718_tx_4 4 + 549281 550024 . 1 744 0 -chrXIII 549938 550814 HC_gene_7070_tx_1 24 - 549938 550814 . 1 877 0 -chrXIII 550086 550418 HC_gene_7070_tx_3 1192 - 550086 550418 . 1 333 0 -chrXIII 550086 550814 HC_gene_7070_tx_2 2128 - 550086 550814 . 1 729 0 -chrXIII 550086 551222 HC_gene_7070_tx_4 65 - 550086 551222 . 1 1137 0 -chrXIII 551906 553013 HC_gene_6719_tx_1 1256 + 551906 553013 . 2 46,518 0,590 -chrXIII 551906 553013 HC_gene_6719_tx_2 24 + 551906 553013 . 2 38,518 0,590 -chrXIII 551906 553013 HC_gene_6719_tx_3 41 + 551906 553013 . 1 1108 0 -chrXIII 551906 553013 HC_gene_6719_tx_4 3 + 551906 553013 . 2 40,518 0,590 -chrXIII 551906 553254 HC_gene_6719_tx_5 3 + 551906 553254 . 2 46,759 0,590 -chrXIII 552551 553013 HC_gene_6719_tx_6 768 + 552551 553013 . 1 463 0 -chrXIII 552551 553254 HC_gene_6719_tx_7 3 + 552551 553254 . 1 704 0 -chrXIII 553229 554560 HC_gene_6720_tx_1 18 + 553229 554560 . 1 1332 0 -chrXIII 553355 554560 HC_gene_6720_tx_2 2 + 553355 554560 . 1 1206 0 -chrXIII 554464 555777 HC_gene_7071_tx_1 7 - 554464 555777 . 1 1314 0 -chrXIII 554464 556109 HC_gene_7071_tx_4 1 - 554464 556109 . 1 1646 0 -chrXIII 554464 556201 HC_gene_7071_tx_5 1 - 554464 556201 . 1 1738 0 -chrXIII 554464 556256 HC_gene_7071_tx_6 3 - 554464 556256 . 1 1793 0 -chrXIII 554464 556673 HC_gene_7071_tx_7 23 - 554464 556673 . 1 2210 0 -chrXIII 554519 556109 HC_gene_7071_tx_8 2 - 554519 556109 . 1 1591 0 -chrXIII 554519 556673 HC_gene_7071_tx_9 1 - 554519 556673 . 2 894,1123 0,1032 -chrXIII 554519 556673 HC_gene_7071_tx_10 2 - 554519 556673 . 1 2155 0 -chrXIII 554591 555777 HC_gene_7071_tx_2 6 - 554591 555777 . 1 1187 0 -chrXIII 554591 556109 HC_gene_7071_tx_11 24 - 554591 556109 . 1 1519 0 -chrXIII 554591 556256 HC_gene_7071_tx_12 9 - 554591 556256 . 1 1666 0 -chrXIII 554591 556634 HC_gene_7071_tx_13 1 - 554591 556634 . 2 1537,391 0,1653 -chrXIII 554591 556673 HC_gene_7071_tx_14 71 - 554591 556673 . 1 2083 0 -chrXIII 554591 556673 HC_gene_7071_tx_15 1 - 554591 556673 . 2 743,1267 0,816 -chrXIII 554591 556673 HC_gene_7071_tx_16 1 - 554591 556673 . 2 768,1273 0,810 -chrXIII 554738 555777 HC_gene_7071_tx_3 8 - 554738 555777 . 1 1040 0 -chrXIII 554738 556109 HC_gene_7071_tx_17 15 - 554738 556109 . 1 1372 0 -chrXIII 554738 556201 HC_gene_7071_tx_18 2 - 554738 556201 . 1 1464 0 -chrXIII 554738 556256 HC_gene_7071_tx_19 6 - 554738 556256 . 1 1519 0 -chrXIII 554738 556673 HC_gene_7071_tx_20 50 - 554738 556673 . 1 1936 0 -chrXIII 556028 556673 HC_gene_7071_tx_21 3 - 556028 556673 . 1 646 0 -chrXIII 556341 557328 LC_gene_6721_tx_1 1 + 556341 557328 . 1 988 0 -chrXIII 556569 556844 HC_gene_7072_tx_1 1 - 556569 556844 . 1 276 0 -chrXIII 556569 556927 HC_gene_7072_tx_2 5 - 556569 556927 . 1 359 0 -chrXIII 557381 557747 HC_gene_7073_tx_1 83 - 557381 557747 . 1 367 0 -chrXIII 557381 558002 HC_gene_7073_tx_2 136 - 557381 558002 . 1 622 0 -chrXIII 557381 558212 HC_gene_7073_tx_3 26 - 557381 558212 . 1 832 0 -chrXIII 557381 558273 HC_gene_7073_tx_4 44 - 557381 558273 . 1 893 0 -chrXIII 557381 558368 HC_gene_7073_tx_5 32 - 557381 558368 . 1 988 0 -chrXIII 557381 558563 HC_gene_7073_tx_6 460 - 557381 558563 . 1 1183 0 -chrXIII 557494 558027 MC_gene_6722_tx_1 1 + 557494 558027 . 1 534 0 -chrXIII 559174 560952 HC_gene_6723_tx_1 16 + 559174 560952 . 2 609,795 0,984 -chrXIII 559174 560952 HC_gene_6723_tx_2 1 + 559174 560952 . 2 600,807 0,972 -chrXIII 559174 560952 HC_gene_6723_tx_3 1 + 559174 560952 . 1 1779 0 -chrXIII 559174 560952 HC_gene_6723_tx_4 1 + 559174 560952 . 2 615,789 0,990 -chrXIII 559174 561968 HC_gene_6723_tx_5 1 + 559174 561968 . 2 609,1811 0,984 -chrXIII 559708 560483 HC_gene_7074_tx_1 3 - 559708 560483 . 1 776 0 -chrXIII 559708 560668 HC_gene_7074_tx_2 5 - 559708 560668 . 1 961 0 -chrXIII 560096 560952 HC_gene_6723_tx_6 1 + 560096 560952 . 1 857 0 -chrXIII 560115 560952 HC_gene_6723_tx_7 1 + 560115 560952 . 1 838 0 -chrXIII 560117 560952 HC_gene_6723_tx_8 26 + 560117 560952 . 1 836 0 -chrXIII 560119 560952 HC_gene_6723_tx_9 1 + 560119 560952 . 1 834 0 -chrXIII 560122 560952 HC_gene_6723_tx_10 1 + 560122 560952 . 1 831 0 -chrXIII 560140 560952 HC_gene_6723_tx_11 1 + 560140 560952 . 1 813 0 -chrXIII 560151 560952 HC_gene_6723_tx_12 1 + 560151 560952 . 1 802 0 -chrXIII 560159 560952 HC_gene_6723_tx_13 2 + 560159 560952 . 1 794 0 -chrXIII 560164 560952 HC_gene_6723_tx_14 1 + 560164 560952 . 1 789 0 -chrXIII 560612 560952 HC_gene_6723_tx_15 21 + 560612 560952 . 1 341 0 -chrXIII 560918 561968 HC_gene_6723_tx_16 110 + 560918 561968 . 1 1051 0 -chrXIII 560918 561968 HC_gene_6723_tx_17 1 + 560918 561968 . 2 935,71 0,980 -chrXIII 560918 561968 HC_gene_6723_tx_18 1 + 560918 561968 . 2 908,75 0,976 -chrXIII 560918 561968 HC_gene_6723_tx_19 1 + 560918 561968 . 2 823,75 0,976 -chrXIII 561107 561968 HC_gene_6723_tx_20 9 + 561107 561968 . 1 862 0 -chrXIII 561252 561968 HC_gene_6723_tx_21 16 + 561252 561968 . 1 717 0 -chrXIII 561809 562273 HC_gene_7075_tx_1 13 - 561809 562273 . 1 465 0 -chrXIII 561809 562416 HC_gene_7075_tx_2 13 - 561809 562416 . 1 608 0 -chrXIII 561809 562569 HC_gene_7075_tx_3 70 - 561809 562569 . 1 761 0 -chrXIII 561809 562916 HC_gene_7075_tx_4 3 - 561809 562916 . 1 1108 0 -chrXIII 562680 562885 HC_gene_6724_tx_1 1 + 562680 562885 . 1 206 0 -chrXIII 563052 564266 HC_gene_6725_tx_1 68 + 563052 564266 . 1 1215 0 -chrXIII 563052 564266 HC_gene_6725_tx_2 1 + 563052 564266 . 2 760,238 0,977 -chrXIII 563052 564266 HC_gene_6725_tx_3 1 + 563052 564266 . 2 802,356 0,859 -chrXIII 563659 564198 MC_gene_7076_tx_1 1 - 563659 564198 . 1 540 0 -chrXIII 563890 564266 HC_gene_6725_tx_4 7 + 563890 564266 . 1 377 0 -chrXIII 564391 565992 HC_gene_6726_tx_1 17 + 564391 565992 . 1 1602 0 -chrXIII 564391 565992 HC_gene_6726_tx_2 1 + 564391 565992 . 2 375,1068 0,534 -chrXIII 564391 566156 HC_gene_6726_tx_3 8 + 564391 566156 . 1 1766 0 -chrXIII 564391 566303 HC_gene_6726_tx_4 1 + 564391 566303 . 1 1913 0 -chrXIII 564391 567380 HC_gene_6726_tx_5 1 + 564391 567380 . 2 985,1621 0,1369 -chrXIII 565795 568210 HC_gene_7077_tx_1 1 - 565795 568210 . 2 970,1384 0,1032 -chrXIII 565795 568210 HC_gene_7077_tx_2 1 - 565795 568210 . 1 2416 0 -chrXIII 565957 568210 HC_gene_7077_tx_3 1 - 565957 568210 . 1 2254 0 -chrXIII 568331 570337 HC_gene_6727_tx_1 2 + 568331 570337 . 1 2007 0 -chrXIII 568550 570337 HC_gene_6727_tx_2 11 + 568550 570337 . 1 1788 0 -chrXIII 570185 570649 HC_gene_7078_tx_1 1 - 570185 570649 . 1 465 0 -chrXIII 570185 571029 HC_gene_7078_tx_3 1 - 570185 571029 . 1 845 0 -chrXIII 570243 570649 HC_gene_7078_tx_2 3 - 570243 570649 . 1 407 0 -chrXIII 570243 571029 HC_gene_7078_tx_4 12 - 570243 571029 . 1 787 0 -chrXIII 570243 571140 HC_gene_7078_tx_5 1 - 570243 571140 . 1 898 0 -chrXIII 571147 572025 HC_gene_7079_tx_1 1 - 571147 572025 . 1 879 0 -chrXIII 571147 572056 HC_gene_7079_tx_2 24 - 571147 572056 . 1 910 0 -chrXIII 571147 572056 HC_gene_7079_tx_3 1 - 571147 572056 . 2 378,330 0,580 -chrXIII 571152 571570 MC_gene_6728_tx_1 1 + 571152 571570 . 1 419 0 -chrXIII 571274 572056 HC_gene_7079_tx_4 12 - 571274 572056 . 1 783 0 -chrXIII 572240 572802 HC_gene_6729_tx_1 122 + 572240 572802 . 1 563 0 -chrXIII 572463 572802 HC_gene_6729_tx_2 8 + 572463 572802 . 1 340 0 -chrXIII 573110 574878 HC_gene_7080_tx_1 8 - 573110 574878 . 1 1769 0 -chrXIII 573110 574878 HC_gene_7080_tx_2 1 - 573110 574878 . 2 792,829 0,940 -chrXIII 574188 574928 LC_gene_6730_tx_1 1 + 574188 574928 . 1 741 0 -chrXIII 575018 577559 HC_gene_6731_tx_1 3 + 575018 577559 . 1 2542 0 -chrXIII 575263 577559 HC_gene_6731_tx_2 1 + 575263 577559 . 1 2297 0 -chrXIII 575761 577456 MC_gene_7081_tx_1 1 - 575761 577456 . 1 1696 0 -chrXIII 577668 578679 HC_gene_6732_tx_1 8 + 577668 578679 . 1 1012 0 -chrXIII 577668 578801 HC_gene_6732_tx_2 77 + 577668 578801 . 1 1134 0 -chrXIII 577668 578801 HC_gene_6732_tx_3 1 + 577668 578801 . 2 641,443 0,691 -chrXIII 577668 578801 HC_gene_6732_tx_4 1 + 577668 578801 . 2 192,581 0,553 -chrXIII 577668 578982 HC_gene_6732_tx_5 1 + 577668 578982 . 1 1315 0 -chrXIII 578176 578679 HC_gene_6732_tx_6 2 + 578176 578679 . 1 504 0 -chrXIII 578176 578801 HC_gene_6732_tx_7 15 + 578176 578801 . 1 626 0 -chrXIII 578243 578801 HC_gene_6732_tx_8 6 + 578243 578801 . 1 559 0 -chrXIII 578610 584088 HC_gene_7082_tx_1 1 - 578610 584088 . 1 5479 0 -chrXIII 578708 584088 HC_gene_7082_tx_2 2 - 578708 584088 . 1 5381 0 -chrXIII 584023 584312 MC_gene_6733_tx_1 1 + 584023 584312 . 1 290 0 -chrXIII 584147 586533 MC_gene_7083_tx_1 1 - 584147 586533 . 1 2387 0 -chrXIII 585304 585732 LC_gene_6734_tx_1 1 + 585304 585732 . 1 429 0 -chrXIII 586897 587753 HC_gene_7084_tx_1 4 - 586897 587753 . 1 857 0 -chrXIII 586897 587753 HC_gene_7084_tx_2 1 - 586897 587753 . 2 726,42 0,815 -chrXIII 586897 587753 HC_gene_7084_tx_3 1 - 586897 587753 . 2 299,99 0,758 -chrXIII 586897 588036 HC_gene_7084_tx_5 1 - 586897 588036 . 1 1140 0 -chrXIII 586897 589687 HC_gene_7084_tx_7 1 - 586897 589687 . 2 1736,411 0,2380 -chrXIII 586950 587753 HC_gene_7084_tx_4 2 - 586950 587753 . 1 804 0 -chrXIII 586950 588036 HC_gene_7084_tx_6 2 - 586950 588036 . 1 1087 0 -chrXIII 586950 589687 HC_gene_7084_tx_8 1 - 586950 589687 . 1 2738 0 -chrXIII 588580 589407 MC_gene_6735_tx_1 1 + 588580 589407 . 1 828 0 -chrXIII 589951 591983 HC_gene_7085_tx_1 5 - 589951 591983 . 1 2033 0 -chrXIII 589951 592170 HC_gene_7085_tx_2 3 - 589951 592170 . 1 2220 0 -chrXIII 589951 592743 HC_gene_7085_tx_3 6 - 589951 592743 . 1 2793 0 -chrXIII 589951 592743 HC_gene_7085_tx_4 1 - 589951 592743 . 2 1301,1380 0,1413 -chrXIII 590367 591668 MC_gene_6736_tx_1 1 + 590367 591668 . 1 1302 0 -chrXIII 590375 591379 MC_gene_6736_tx_2 1 + 590375 591379 . 1 1005 0 -chrXIII 592927 593339 MC_gene_6737_tx_1 1 + 592927 593339 . 1 413 0 -chrXIII 593142 594487 HC_gene_7086_tx_1 5 - 593142 594487 . 1 1346 0 -chrXIII 593142 594694 HC_gene_7086_tx_2 8 - 593142 594694 . 1 1553 0 -chrXIII 594866 597900 HC_gene_6738_tx_1 3 + 594866 597900 . 1 3035 0 -chrXIII 596459 599265 HC_gene_7087_tx_1 2 - 596459 599265 . 1 2807 0 -chrXIII 596695 599265 HC_gene_7087_tx_2 5 - 596695 599265 . 1 2571 0 -chrXIII 596695 599265 HC_gene_7087_tx_3 1 - 596695 599265 . 2 1145,1327 0,1244 -chrXIII 596945 599265 HC_gene_7087_tx_4 1 - 596945 599265 . 1 2321 0 -chrXIII 599294 599726 HC_gene_7088_tx_1 4 - 599294 599726 . 1 433 0 -chrXIII 599294 600062 HC_gene_7088_tx_2 1 - 599294 600062 . 1 769 0 -chrXIII 599294 600909 HC_gene_7088_tx_3 1 - 599294 600909 . 1 1616 0 -chrXIII 599294 601082 HC_gene_7088_tx_4 2 - 599294 601082 . 1 1789 0 -chrXIII 599294 601197 HC_gene_7088_tx_5 4 - 599294 601197 . 1 1904 0 -chrXIII 600506 600985 MC_gene_6739_tx_1 1 + 600506 600985 . 1 480 0 -chrXIII 601415 602162 MC_gene_6740_tx_1 1 + 601415 602162 . 1 748 0 -chrXIII 601499 603109 HC_gene_7089_tx_1 1 - 601499 603109 . 2 822,673 0,938 -chrXIII 601499 603109 HC_gene_7089_tx_2 15 - 601499 603109 . 1 1611 0 -chrXIII 601499 603307 HC_gene_7089_tx_3 1 - 601499 603307 . 1 1809 0 -chrXIII 603218 603800 HC_gene_6741_tx_1 3 + 603218 603800 . 1 583 0 -chrXIII 603615 605460 HC_gene_7090_tx_1 5 - 603615 605460 . 1 1846 0 -chrXIII 603615 605717 HC_gene_7090_tx_2 26 - 603615 605717 . 1 2103 0 -chrXIII 603615 605717 HC_gene_7090_tx_3 1 - 603615 605717 . 2 1249,796 0,1307 -chrXIII 605862 606530 HC_gene_7091_tx_1 2 - 605862 606530 . 1 669 0 -chrXIII 606105 608246 HC_gene_6742_tx_1 2 + 606105 608246 . 1 2142 0 -chrXIII 606105 608246 HC_gene_6742_tx_2 1 + 606105 608246 . 2 93,1662 0,480 -chrXIII 606519 608246 HC_gene_6742_tx_3 3 + 606519 608246 . 1 1728 0 -chrXIII 607790 608246 HC_gene_6742_tx_4 8 + 607790 608246 . 1 457 0 -chrXIII 608519 610093 HC_gene_6743_tx_1 6 + 608519 610093 . 1 1575 0 -chrXIII 608592 609819 MC_gene_7092_tx_1 1 - 608592 609819 . 1 1228 0 -chrXIII 608634 610093 HC_gene_6743_tx_2 129 + 608634 610093 . 1 1460 0 -chrXIII 608634 610093 HC_gene_6743_tx_3 1 + 608634 610093 . 2 113,1261 0,199 -chrXIII 608634 610093 HC_gene_6743_tx_4 1 + 608634 610093 . 2 73,1290 0,170 -chrXIII 608634 610093 HC_gene_6743_tx_5 1 + 608634 610093 . 2 1005,238 0,1222 -chrXIII 608767 610093 HC_gene_6743_tx_6 22 + 608767 610093 . 1 1327 0 -chrXIII 609094 610093 HC_gene_6743_tx_7 18 + 609094 610093 . 1 1000 0 -chrXIII 609202 610093 HC_gene_6743_tx_8 17 + 609202 610093 . 1 892 0 -chrXIII 609202 610093 HC_gene_6743_tx_9 1 + 609202 610093 . 2 275,281 0,611 -chrXIII 609451 610093 HC_gene_6743_tx_10 24 + 609451 610093 . 1 643 0 -chrXIII 609568 610093 HC_gene_6743_tx_11 37 + 609568 610093 . 1 526 0 -chrXIII 609796 610093 HC_gene_6743_tx_12 17 + 609796 610093 . 1 298 0 -chrXIII 609995 610264 HC_gene_7093_tx_1 3 - 609995 610264 . 1 270 0 -chrXIII 609995 610400 HC_gene_7093_tx_2 55 - 609995 610400 . 1 406 0 -chrXIII 609995 610670 HC_gene_7093_tx_3 2 - 609995 610670 . 1 676 0 -chrXIII 609995 610970 HC_gene_7093_tx_4 6 - 609995 610970 . 1 976 0 -chrXIII 610422 610951 HC_gene_6744_tx_1 1 + 610422 610951 . 1 530 0 -chrXIII 610422 611023 HC_gene_6744_tx_2 10 + 610422 611023 . 1 602 0 -chrXIII 610600 611023 HC_gene_6744_tx_3 6 + 610600 611023 . 1 424 0 -chrXIII 610752 611023 HC_gene_6744_tx_4 1 + 610752 611023 . 1 272 0 -chrXIII 611079 611373 MC_gene_6745_tx_1 1 + 611079 611373 . 1 295 0 -chrXIII 611344 611928 LC_gene_7094_tx_1 1 - 611344 611928 . 1 585 0 -chrXIII 611631 614056 HC_gene_6746_tx_1 2 + 611631 614056 . 1 2426 0 -chrXIII 611631 614180 HC_gene_6746_tx_2 1 + 611631 614180 . 1 2550 0 -chrXIII 611631 614372 HC_gene_6746_tx_3 1 + 611631 614372 . 1 2742 0 -chrXIII 611631 616059 HC_gene_6746_tx_4 1 + 611631 616059 . 1 4429 0 -chrXIII 615972 616273 HC_gene_7095_tx_1 18 - 615972 616273 . 1 302 0 -chrXIII 616409 618307 HC_gene_6747_tx_1 19 + 616409 618307 . 1 1899 0 -chrXIII 616493 618307 HC_gene_6747_tx_2 2 + 616493 618307 . 1 1815 0 -chrXIII 616644 618307 HC_gene_6747_tx_3 7 + 616644 618307 . 1 1664 0 -chrXIII 618397 619475 HC_gene_7096_tx_1 1 - 618397 619475 . 1 1079 0 -chrXIII 618445 619035 HC_gene_6748_tx_1 3 + 618445 619035 . 1 591 0 -chrXIII 618445 619379 HC_gene_6748_tx_2 89 + 618445 619379 . 1 935 0 -chrXIII 618445 619566 HC_gene_6748_tx_3 6 + 618445 619566 . 1 1122 0 -chrXIII 618880 619475 HC_gene_7096_tx_2 11 - 618880 619475 . 1 596 0 -chrXIII 618947 619379 HC_gene_6748_tx_4 13 + 618947 619379 . 1 433 0 -chrXIII 618947 619566 HC_gene_6748_tx_5 2 + 618947 619566 . 1 620 0 -chrXIII 619212 619475 HC_gene_7096_tx_3 1 - 619212 619475 . 1 264 0 -chrXIII 619673 622244 HC_gene_6749_tx_1 1 + 619673 622244 . 2 188,2164 0,408 -chrXIII 619673 622244 HC_gene_6749_tx_2 1 + 619673 622244 . 1 2572 0 -chrXIII 619783 620864 HC_gene_6749_tx_3 1 + 619783 620864 . 1 1082 0 -chrXIII 620247 622244 HC_gene_6749_tx_4 1 + 620247 622244 . 1 1998 0 -chrXIII 620769 624259 HC_gene_7097_tx_1 1 - 620769 624259 . 1 3491 0 -chrXIII 621036 622244 HC_gene_6749_tx_5 1 + 621036 622244 . 2 230,765 0,444 -chrXIII 621036 622244 HC_gene_6749_tx_6 3 + 621036 622244 . 1 1209 0 -chrXIII 622124 622428 HC_gene_7097_tx_2 18 - 622124 622428 . 1 305 0 -chrXIII 622124 622665 HC_gene_7097_tx_3 4 - 622124 622665 . 1 542 0 -chrXIII 622124 622745 HC_gene_7097_tx_4 4 - 622124 622745 . 1 622 0 -chrXIII 622124 622969 HC_gene_7097_tx_5 2 - 622124 622969 . 1 846 0 -chrXIII 622124 623252 HC_gene_7097_tx_6 24 - 622124 623252 . 1 1129 0 -chrXIII 622124 625281 HC_gene_7097_tx_7 1 - 622124 625281 . 1 3158 0 -chrXIII 622607 623094 HC_gene_7097_tx_8 1 - 622607 623094 . 1 488 0 -chrXIII 622607 623252 HC_gene_7097_tx_9 4 - 622607 623252 . 1 646 0 -chrXIII 622607 623258 HC_gene_7097_tx_10 1 - 622607 623258 . 1 652 0 -chrXIII 622607 623584 HC_gene_7097_tx_11 1 - 622607 623584 . 1 978 0 -chrXIII 623319 624259 HC_gene_7097_tx_12 1 - 623319 624259 . 1 941 0 -chrXIII 623322 624259 HC_gene_7097_tx_13 3 - 623322 624259 . 1 938 0 -chrXIII 623322 625281 HC_gene_7097_tx_18 1 - 623322 625281 . 2 1026,796 0,1164 -chrXIII 623324 624259 HC_gene_7097_tx_14 1 - 623324 624259 . 1 936 0 -chrXIII 623325 624259 HC_gene_7097_tx_15 3 - 623325 624259 . 1 935 0 -chrXIII 623325 625281 HC_gene_7097_tx_19 1 - 623325 625281 . 1 1957 0 -chrXIII 623326 624259 HC_gene_7097_tx_16 1 - 623326 624259 . 1 934 0 -chrXIII 623326 625281 HC_gene_7097_tx_20 1 - 623326 625281 . 1 1956 0 -chrXIII 623422 625144 HC_gene_6750_tx_1 3 + 623422 625144 . 1 1723 0 -chrXIII 623422 626013 HC_gene_6750_tx_2 1 + 623422 626013 . 2 750,1485 0,1107 -chrXIII 623422 626013 HC_gene_6750_tx_3 1 + 623422 626013 . 2 862,1675 0,917 -chrXIII 623422 626013 HC_gene_6750_tx_4 2 + 623422 626013 . 1 2592 0 -chrXIII 623450 624259 HC_gene_7097_tx_17 35 - 623450 624259 . 1 810 0 -chrXIII 623450 625281 HC_gene_7097_tx_21 8 - 623450 625281 . 1 1832 0 -chrXIII 624447 626013 HC_gene_6750_tx_5 1 + 624447 626013 . 1 1567 0 -chrXIII 624447 626741 HC_gene_6750_tx_6 1 + 624447 626741 . 1 2295 0 -chrXIII 625275 626013 HC_gene_6750_tx_7 3 + 625275 626013 . 1 739 0 -chrXIII 625447 626381 MC_gene_7098_tx_1 1 - 625447 626381 . 1 935 0 -chrXIII 625821 626741 HC_gene_6750_tx_8 1 + 625821 626741 . 1 921 0 -chrXIII 626349 626741 HC_gene_6750_tx_9 54 + 626349 626741 . 1 393 0 -chrXIII 626349 626839 HC_gene_6750_tx_10 17 + 626349 626839 . 1 491 0 -chrXIII 626430 626741 HC_gene_6750_tx_12 12 + 626430 626741 . 1 312 0 -chrXIII 626430 626839 HC_gene_6750_tx_11 4 + 626430 626839 . 1 410 0 -chrXIII 626640 626908 HC_gene_7099_tx_1 6 - 626640 626908 . 1 269 0 -chrXIII 626640 627063 HC_gene_7099_tx_2 24 - 626640 627063 . 1 424 0 -chrXIII 626640 627172 HC_gene_7099_tx_3 9 - 626640 627172 . 1 533 0 -chrXIII 626640 627489 HC_gene_7099_tx_4 16 - 626640 627489 . 1 850 0 -chrXIII 626640 627553 HC_gene_7099_tx_5 7 - 626640 627553 . 1 914 0 -chrXIII 626640 627745 HC_gene_7099_tx_6 10 - 626640 627745 . 1 1106 0 -chrXIII 626640 627875 HC_gene_7099_tx_7 131 - 626640 627875 . 1 1236 0 -chrXIII 627167 627472 LC_gene_6751_tx_1 1 + 627167 627472 . 1 306 0 -chrXIII 628132 628830 HC_gene_6752_tx_1 115 + 628132 628830 . 1 699 0 -chrXIII 628132 628898 HC_gene_6752_tx_2 2 + 628132 628898 . 1 767 0 -chrXIII 628461 628747 MC_gene_7100_tx_1 1 - 628461 628747 . 1 287 0 -chrXIII 629019 629566 HC_gene_6753_tx_1 1 + 629019 629566 . 1 548 0 -chrXIII 629019 631091 HC_gene_6753_tx_2 1 + 629019 631091 . 1 2073 0 -chrXIII 629019 631387 HC_gene_6753_tx_3 1 + 629019 631387 . 1 2369 0 -chrXIII 629019 632030 HC_gene_6753_tx_4 3 + 629019 632030 . 1 3012 0 -chrXIII 629019 632030 HC_gene_6753_tx_5 1 + 629019 632030 . 2 1463,749 0,2263 -chrXIII 632327 634554 HC_gene_6754_tx_1 485 + 632327 634554 . 1 2228 0 -chrXIII 632327 634554 HC_gene_6754_tx_2 1 + 632327 634554 . 2 1355,788 0,1440 -chrXIII 632327 634554 HC_gene_6754_tx_3 1 + 632327 634554 . 2 1095,1073 0,1155 -chrXIII 632327 634554 HC_gene_6754_tx_4 1 + 632327 634554 . 2 1147,958 0,1270 -chrXIII 632327 634554 HC_gene_6754_tx_5 1 + 632327 634554 . 2 1280,882 0,1346 -chrXIII 632327 634554 HC_gene_6754_tx_6 1 + 632327 634554 . 2 953,1198 0,1030 -chrXIII 632327 634554 HC_gene_6754_tx_7 1 + 632327 634554 . 2 719,1073 0,1155 -chrXIII 632327 634554 HC_gene_6754_tx_8 1 + 632327 634554 . 2 1455,70 0,2158 -chrXIII 632327 634554 HC_gene_6754_tx_9 1 + 632327 634554 . 2 696,1376 0,852 -chrXIII 632327 634554 HC_gene_6754_tx_10 1 + 632327 634554 . 2 1294,827 0,1401 -chrXIII 632327 634554 HC_gene_6754_tx_11 1 + 632327 634554 . 2 1224,924 0,1304 -chrXIII 632327 634554 HC_gene_6754_tx_12 1 + 632327 634554 . 2 1238,900 0,1328 -chrXIII 632327 634554 HC_gene_6754_tx_13 1 + 632327 634554 . 2 275,1134 0,1094 -chrXIII 632327 634554 HC_gene_6754_tx_14 1 + 632327 634554 . 2 1186,976 0,1252 -chrXIII 632327 634554 HC_gene_6754_tx_15 1 + 632327 634554 . 2 826,1089 0,1139 -chrXIII 632327 634554 HC_gene_6754_tx_16 1 + 632327 634554 . 2 1238,914 0,1314 -chrXIII 632327 634554 HC_gene_6754_tx_17 1 + 632327 634554 . 2 1334,827 0,1401 -chrXIII 632327 634554 HC_gene_6754_tx_18 1 + 632327 634554 . 2 1238,940 0,1288 -chrXIII 632327 634554 HC_gene_6754_tx_19 1 + 632327 634554 . 3 891,808,247 0,1109,1981 -chrXIII 632327 634554 HC_gene_6754_tx_20 1 + 632327 634554 . 2 1194,943 0,1285 -chrXIII 632327 634554 HC_gene_6754_tx_21 1 + 632327 634554 . 2 1334,759 0,1469 -chrXIII 632327 634554 HC_gene_6754_tx_22 1 + 632327 634554 . 2 1469,680 0,1548 -chrXIII 632327 634554 HC_gene_6754_tx_23 1 + 632327 634554 . 2 1280,869 0,1359 -chrXIII 632327 634554 HC_gene_6754_tx_24 1 + 632327 634554 . 2 1423,720 0,1508 -chrXIII 632327 634554 HC_gene_6754_tx_25 1 + 632327 634554 . 2 1224,940 0,1288 -chrXIII 632327 634554 HC_gene_6754_tx_26 1 + 632327 634554 . 2 833,1331 0,897 -chrXIII 632341 634554 HC_gene_6754_tx_27 1 + 632341 634554 . 2 1565,495 0,1719 -chrXIII 632994 634554 HC_gene_6754_tx_28 1 + 632994 634554 . 2 63,924 0,637 -chrXIII 633014 634554 HC_gene_6754_tx_29 1 + 633014 634554 . 2 50,1399 0,142 -chrXIII 633046 634554 HC_gene_6754_tx_30 385 + 633046 634554 . 1 1509 0 -chrXIII 633046 634554 HC_gene_6754_tx_31 1 + 633046 634554 . 2 575,877 0,632 -chrXIII 633046 634554 HC_gene_6754_tx_32 1 + 633046 634554 . 2 623,788 0,721 -chrXIII 633046 634554 HC_gene_6754_tx_33 1 + 633046 634554 . 2 357,1098 0,411 -chrXIII 633046 634554 HC_gene_6754_tx_34 1 + 633046 634554 . 2 636,788 0,721 -chrXIII 633046 634554 HC_gene_6754_tx_35 1 + 633046 634554 . 2 1428,35 0,1474 -chrXIII 633046 634554 HC_gene_6754_tx_36 1 + 633046 634554 . 2 601,793 0,716 -chrXIII 633046 634554 HC_gene_6754_tx_37 1 + 633046 634554 . 2 496,680 0,829 -chrXIII 633046 634554 HC_gene_6754_tx_38 1 + 633046 634554 . 2 178,1259 0,250 -chrXIII 633241 634554 HC_gene_6754_tx_39 57 + 633241 634554 . 1 1314 0 -chrXIII 633442 634554 HC_gene_6754_tx_40 271 + 633442 634554 . 1 1113 0 -chrXIII 633442 634554 HC_gene_6754_tx_41 1 + 633442 634554 . 2 313,745 0,368 -chrXIII 633717 634554 HC_gene_6754_tx_42 58 + 633717 634554 . 1 838 0 -chrXIII 633717 634554 HC_gene_6754_tx_43 1 + 633717 634554 . 2 364,394 0,444 -chrXIII 633819 634554 HC_gene_6754_tx_44 109 + 633819 634554 . 1 736 0 -chrXIII 633895 634554 HC_gene_6754_tx_45 78 + 633895 634554 . 1 660 0 -chrXIII 634036 634554 HC_gene_6754_tx_46 203 + 634036 634554 . 1 519 0 -chrXIII 634140 634554 HC_gene_6754_tx_47 250 + 634140 634554 . 1 415 0 -chrXIII 634239 634554 HC_gene_6754_tx_48 170 + 634239 634554 . 1 316 0 -chrXIII 634290 634554 HC_gene_6754_tx_49 107 + 634290 634554 . 1 265 0 -chrXIII 634450 636007 HC_gene_7101_tx_1 4 - 634450 636007 . 1 1558 0 -chrXIII 634638 636007 HC_gene_7101_tx_2 1 - 634638 636007 . 1 1370 0 -chrXIII 634734 636146 LC_gene_6755_tx_1 1 + 634734 636146 . 1 1413 0 -chrXIII 636178 636486 HC_gene_7102_tx_1 10 - 636178 636486 . 1 309 0 -chrXIII 636178 636842 HC_gene_7102_tx_2 7 - 636178 636842 . 1 665 0 -chrXIII 636178 636903 HC_gene_7102_tx_3 3 - 636178 636903 . 1 726 0 -chrXIII 636178 637079 HC_gene_7102_tx_4 63 - 636178 637079 . 1 902 0 -chrXIII 636352 637079 HC_gene_7102_tx_5 1 - 636352 637079 . 1 728 0 -chrXIII 637393 640686 HC_gene_6756_tx_1 11 + 637393 640686 . 1 3294 0 -chrXIII 637393 640686 HC_gene_6756_tx_2 1 + 637393 640686 . 2 181,1800 0,1494 -chrXIII 637759 640686 HC_gene_6756_tx_3 2 + 637759 640686 . 1 2928 0 -chrXIII 640032 640686 HC_gene_6756_tx_4 10 + 640032 640686 . 1 655 0 -chrXIII 640736 641157 HC_gene_7103_tx_1 1 - 640736 641157 . 1 422 0 -chrXIII 640736 645411 HC_gene_7103_tx_2 2 - 640736 645411 . 1 4676 0 -chrXIII 640736 645411 HC_gene_7103_tx_3 1 - 640736 645411 . 2 1321,3223 0,1453 -chrXIII 645308 646615 LC_gene_7104_tx_1 1 - 645308 646615 . 1 1308 0 -chrXIII 645642 646937 HC_gene_6757_tx_1 35 + 645642 646937 . 1 1296 0 -chrXIII 645844 646937 HC_gene_6757_tx_2 7 + 645844 646937 . 1 1094 0 -chrXIII 645969 646937 HC_gene_6757_tx_3 9 + 645969 646937 . 1 969 0 -chrXIII 646109 646937 HC_gene_6757_tx_4 6 + 646109 646937 . 1 829 0 -chrXIII 647024 648125 HC_gene_6758_tx_1 2 + 647024 648125 . 1 1102 0 -chrXIII 647024 649361 HC_gene_6758_tx_2 8 + 647024 649361 . 1 2338 0 -chrXIII 647239 649361 HC_gene_6758_tx_3 1 + 647239 649361 . 1 2123 0 -chrXIII 649623 650838 LC_gene_7105_tx_1 1 - 649623 650838 . 1 1216 0 -chrXIII 650025 650936 HC_gene_6759_tx_1 37 + 650025 650936 . 1 912 0 -chrXIII 650098 650936 HC_gene_6759_tx_2 2 + 650098 650936 . 1 839 0 -chrXIII 650219 650936 HC_gene_6759_tx_3 5 + 650219 650936 . 1 718 0 -chrXIII 651127 652011 HC_gene_6760_tx_1 151 + 651127 652011 . 2 34,388 0,497 -chrXIII 651127 652011 HC_gene_6760_tx_2 87 + 651127 652011 . 1 885 0 -chrXIII 651384 651952 LC_gene_7106_tx_1 1 - 651384 651952 . 1 569 0 -chrXIII 651609 652011 HC_gene_6760_tx_3 1063 + 651609 652011 . 1 403 0 -chrXIII 652117 652933 HC_gene_7107_tx_1 2 - 652117 652933 . 1 817 0 -chrXIII 652274 652730 HC_gene_6761_tx_1 41 + 652274 652730 . 1 457 0 -chrXIII 652274 652832 HC_gene_6761_tx_2 10 + 652274 652832 . 1 559 0 -chrXIII 652321 652933 HC_gene_7107_tx_2 24 - 652321 652933 . 2 455,86 0,527 -chrXIII 652321 652933 HC_gene_7107_tx_3 45 - 652321 652933 . 1 613 0 -chrXIII 652321 652933 HC_gene_7107_tx_4 2 - 652321 652933 . 2 455,90 0,523 -chrXIII 652321 652933 HC_gene_7107_tx_5 1 - 652321 652933 . 2 435,90 0,523 -chrXIII 652321 653157 HC_gene_7107_tx_10 10 - 652321 653157 . 1 837 0 -chrXIII 652321 653157 HC_gene_7107_tx_11 1 - 652321 653157 . 2 642,157 0,680 -chrXIII 652321 653157 HC_gene_7107_tx_12 1 - 652321 653157 . 2 440,314 0,523 -chrXIII 652321 653258 HC_gene_7107_tx_13 5 - 652321 653258 . 1 938 0 -chrXIII 652321 653258 HC_gene_7107_tx_14 1 - 652321 653258 . 2 445,415 0,523 -chrXIII 652421 652933 HC_gene_7107_tx_6 2 - 652421 652933 . 1 513 0 -chrXIII 652421 652933 HC_gene_7107_tx_7 1 - 652421 652933 . 2 355,86 0,427 -chrXIII 652421 653157 HC_gene_7107_tx_15 4 - 652421 653157 . 1 737 0 -chrXIII 652520 652933 HC_gene_7107_tx_8 3 - 652520 652933 . 1 414 0 -chrXIII 652520 652933 HC_gene_7107_tx_9 1 - 652520 652933 . 2 256,86 0,328 -chrXIII 652808 653157 HC_gene_7107_tx_16 6 - 652808 653157 . 1 350 0 -chrXIII 652808 653258 HC_gene_7107_tx_17 3 - 652808 653258 . 1 451 0 -chrXIII 653088 653904 LC_gene_6762_tx_1 1 + 653088 653904 . 1 817 0 -chrXIII 653941 654545 HC_gene_6763_tx_1 232 + 653941 654545 . 1 605 0 -chrXIII 653941 654956 HC_gene_6763_tx_2 8 + 653941 654956 . 1 1016 0 -chrXIII 653970 654660 MC_gene_7108_tx_1 1 - 653970 654660 . 1 691 0 -chrXIII 654202 654545 HC_gene_6763_tx_3 15 + 654202 654545 . 1 344 0 -chrXIII 654271 654731 MC_gene_7109_tx_1 1 - 654271 654731 . 1 461 0 -chrXIII 654882 656099 HC_gene_7110_tx_1 4 - 654882 656099 . 1 1218 0 -chrXIII 655009 658447 HC_gene_6764_tx_1 3 + 655009 658447 . 1 3439 0 -chrXIII 656208 657206 LC_gene_7111_tx_1 1 - 656208 657206 . 2 172,540 0,459 -chrXIII 656389 658447 HC_gene_6764_tx_2 12 + 656389 658447 . 1 2059 0 -chrXIII 656885 658447 HC_gene_6764_tx_3 2 + 656885 658447 . 1 1563 0 -chrXIII 658196 659232 HC_gene_7112_tx_1 1 - 658196 659232 . 1 1037 0 -chrXIII 658343 658806 HC_gene_7112_tx_5 13 - 658343 658806 . 1 464 0 -chrXIII 658343 659032 HC_gene_7112_tx_2 20 - 658343 659032 . 1 690 0 -chrXIII 658343 659196 HC_gene_7112_tx_3 1 - 658343 659196 . 2 384,397 0,457 -chrXIII 658343 659232 HC_gene_7112_tx_4 74 - 658343 659232 . 1 890 0 -chrXIII 659472 661660 HC_gene_6765_tx_1 4 + 659472 661660 . 1 2189 0 -chrXIII 659472 661760 HC_gene_6765_tx_2 1 + 659472 661760 . 1 2289 0 -chrXIII 659971 661397 HC_gene_6765_tx_3 1 + 659971 661397 . 1 1427 0 -chrXIII 659971 661660 HC_gene_6765_tx_4 1 + 659971 661660 . 2 973,573 0,1117 -chrXIII 660226 661547 LC_gene_7113_tx_1 1 - 660226 661547 . 1 1322 0 -chrXIII 661526 661925 MC_gene_7114_tx_1 1 - 661526 661925 . 1 400 0 -chrXIII 662120 662405 HC_gene_6766_tx_1 3 + 662120 662405 . 1 286 0 -chrXIII 662120 662468 HC_gene_6766_tx_2 2 + 662120 662468 . 1 349 0 -chrXIII 662120 664381 HC_gene_6766_tx_4 1 + 662120 664381 . 1 2262 0 -chrXIII 662132 662468 HC_gene_6766_tx_3 1 + 662132 662468 . 1 337 0 -chrXIII 662257 662468 HC_gene_6766_tx_7 1 + 662257 662468 . 1 212 0 -chrXIII 662430 664381 HC_gene_6766_tx_5 23 + 662430 664381 . 1 1952 0 -chrXIII 662511 664381 HC_gene_6766_tx_6 2 + 662511 664381 . 1 1871 0 -chrXIII 663206 664322 LC_gene_7115_tx_1 1 - 663206 664322 . 1 1117 0 -chrXIII 664659 665632 HC_gene_6767_tx_1 3 + 664659 665632 . 1 974 0 -chrXIII 664659 665636 HC_gene_6767_tx_2 3 + 664659 665636 . 1 978 0 -chrXIII 664659 665870 HC_gene_6767_tx_3 128 + 664659 665870 . 1 1212 0 -chrXIII 664659 665870 HC_gene_6767_tx_4 1 + 664659 665870 . 2 738,430 0,782 -chrXIII 664659 665870 HC_gene_6767_tx_5 1 + 664659 665870 . 2 109,793 0,419 -chrXIII 664794 665870 HC_gene_6767_tx_6 10 + 664794 665870 . 1 1077 0 -chrXIII 664892 665636 HC_gene_6767_tx_10 1 + 664892 665636 . 1 745 0 -chrXIII 664892 665870 HC_gene_6767_tx_7 14 + 664892 665870 . 1 979 0 -chrXIII 665073 665870 HC_gene_6767_tx_8 22 + 665073 665870 . 1 798 0 -chrXIII 665200 665636 HC_gene_6767_tx_11 1 + 665200 665636 . 1 437 0 -chrXIII 665200 665870 HC_gene_6767_tx_9 24 + 665200 665870 . 1 671 0 -chrXIII 665658 666072 HC_gene_7116_tx_1 3 - 665658 666072 . 1 415 0 -chrXIII 665658 666197 HC_gene_7116_tx_2 4 - 665658 666197 . 1 540 0 -chrXIII 665658 666940 HC_gene_7116_tx_3 5 - 665658 666940 . 1 1283 0 -chrXIII 665658 667060 HC_gene_7116_tx_4 1 - 665658 667060 . 2 1276,43 0,1360 -chrXIII 665658 667060 HC_gene_7116_tx_5 2 - 665658 667060 . 1 1403 0 -chrXIII 665658 667060 HC_gene_7116_tx_6 1 - 665658 667060 . 2 1265,47 0,1356 -chrXIII 665782 666072 HC_gene_7116_tx_10 1 - 665782 666072 . 1 291 0 -chrXIII 665782 666940 HC_gene_7116_tx_7 1 - 665782 666940 . 1 1159 0 -chrXIII 665782 667060 HC_gene_7116_tx_8 4 - 665782 667060 . 1 1279 0 -chrXIII 665782 667060 HC_gene_7116_tx_9 3 - 665782 667060 . 2 1152,43 0,1236 -chrXIII 665782 667702 HC_gene_7116_tx_11 1 - 665782 667702 . 1 1921 0 -chrXIII 667511 668269 HC_gene_6768_tx_1 518 + 667511 668269 . 1 759 0 -chrXIII 667691 668269 HC_gene_6768_tx_2 78 + 667691 668269 . 1 579 0 -chrXIII 667779 668238 MC_gene_7117_tx_1 1 - 667779 668238 . 1 460 0 -chrXIII 667807 668269 HC_gene_6768_tx_3 28 + 667807 668269 . 1 463 0 -chrXIII 668426 669733 HC_gene_6769_tx_1 1 + 668426 669733 . 1 1308 0 -chrXIII 668426 669743 HC_gene_6769_tx_2 1 + 668426 669743 . 1 1318 0 -chrXIII 668426 669744 HC_gene_6769_tx_3 1 + 668426 669744 . 1 1319 0 -chrXIII 668426 669744 HC_gene_6769_tx_4 1 + 668426 669744 . 2 1167,85 0,1234 -chrXIII 668426 669749 HC_gene_6769_tx_5 2 + 668426 669749 . 1 1324 0 -chrXIII 668426 669750 HC_gene_6769_tx_6 1 + 668426 669750 . 1 1325 0 -chrXIII 668426 669754 HC_gene_6769_tx_7 1 + 668426 669754 . 1 1329 0 -chrXIII 668426 669755 HC_gene_6769_tx_8 2 + 668426 669755 . 1 1330 0 -chrXIII 668426 669759 HC_gene_6769_tx_9 1 + 668426 669759 . 1 1334 0 -chrXIII 668426 669765 HC_gene_6769_tx_10 1 + 668426 669765 . 1 1340 0 -chrXIII 668426 669769 HC_gene_6769_tx_11 2 + 668426 669769 . 1 1344 0 -chrXIII 668426 669876 HC_gene_6769_tx_12 185 + 668426 669876 . 1 1451 0 -chrXIII 668426 669986 HC_gene_6769_tx_13 5 + 668426 669986 . 1 1561 0 -chrXIII 668578 669743 HC_gene_6769_tx_14 1 + 668578 669743 . 1 1166 0 -chrXIII 668578 669876 HC_gene_6769_tx_15 20 + 668578 669876 . 1 1299 0 -chrXIII 668578 669876 HC_gene_6769_tx_16 1 + 668578 669876 . 2 731,483 0,816 -chrXIII 668740 669733 HC_gene_6769_tx_17 1 + 668740 669733 . 1 994 0 -chrXIII 668740 669743 HC_gene_6769_tx_18 1 + 668740 669743 . 1 1004 0 -chrXIII 668740 669750 HC_gene_6769_tx_19 1 + 668740 669750 . 1 1011 0 -chrXIII 668740 669876 HC_gene_6769_tx_20 18 + 668740 669876 . 1 1137 0 -chrXIII 668740 669986 HC_gene_6769_tx_21 1 + 668740 669986 . 1 1247 0 -chrXIII 669758 671376 HC_gene_7118_tx_1 3 - 669758 671376 . 1 1619 0 -chrXIII 671552 671897 HC_gene_7119_tx_1 79 - 671552 671897 . 1 346 0 -chrXIII 671552 672195 HC_gene_7119_tx_2 96 - 671552 672195 . 1 644 0 -chrXIII 671552 672267 HC_gene_7119_tx_3 15 - 671552 672267 . 1 716 0 -chrXIII 671552 672337 HC_gene_7119_tx_4 73 - 671552 672337 . 1 786 0 -chrXIII 671552 672441 HC_gene_7119_tx_5 85 - 671552 672441 . 1 890 0 -chrXIII 671552 672835 HC_gene_7119_tx_6 48 - 671552 672835 . 1 1284 0 -chrXIII 671552 672889 HC_gene_7119_tx_7 30 - 671552 672889 . 1 1338 0 -chrXIII 671552 673311 HC_gene_7119_tx_8 61 - 671552 673311 . 1 1760 0 -chrXIII 671552 673311 HC_gene_7119_tx_9 1 - 671552 673311 . 2 1164,511 0,1249 -chrXIII 671552 673311 HC_gene_7119_tx_10 1 - 671552 673311 . 2 793,904 0,856 -chrXIII 671552 673311 HC_gene_7119_tx_11 1 - 671552 673311 . 2 87,1519 0,241 -chrXIII 671552 673311 HC_gene_7119_tx_12 1 - 671552 673311 . 2 1364,337 0,1423 -chrXIII 671552 673311 HC_gene_7119_tx_13 1 - 671552 673311 . 2 381,1325 0,435 -chrXIII 671552 673458 HC_gene_7119_tx_14 32 - 671552 673458 . 1 1907 0 -chrXIII 671552 673580 HC_gene_7119_tx_15 61 - 671552 673580 . 1 2029 0 -chrXIII 671552 673580 HC_gene_7119_tx_16 1 - 671552 673580 . 2 1355,554 0,1475 -chrXIII 671552 673580 HC_gene_7119_tx_17 1 - 671552 673580 . 2 553,981 0,1048 -chrXIII 671552 673580 HC_gene_7119_tx_18 1 - 671552 673580 . 2 919,981 0,1048 -chrXIII 671552 673809 HC_gene_7119_tx_19 12 - 671552 673809 . 1 2258 0 -chrXIII 671552 673809 HC_gene_7119_tx_20 1 - 671552 673809 . 2 1092,663 0,1595 -chrXIII 671552 673809 HC_gene_7119_tx_21 1 - 671552 673809 . 2 800,1408 0,850 -chrXIII 671552 673937 HC_gene_7119_tx_22 66 - 671552 673937 . 1 2386 0 -chrXIII 671552 673937 HC_gene_7119_tx_23 1 - 671552 673937 . 2 1557,543 0,1843 -chrXIII 671552 673937 HC_gene_7119_tx_24 1 - 671552 673937 . 2 1966,246 0,2140 -chrXIII 671552 673937 HC_gene_7119_tx_25 1 - 671552 673937 . 2 314,2016 0,370 -chrXIII 671552 674055 HC_gene_7119_tx_26 1 - 671552 674055 . 1 2504 0 -chrXIII 671552 674110 HC_gene_7119_tx_27 27 - 671552 674110 . 1 2559 0 -chrXIII 671552 674110 HC_gene_7119_tx_28 1 - 671552 674110 . 2 1606,676 0,1883 -chrXIII 671552 674538 HC_gene_7119_tx_29 16 - 671552 674538 . 1 2987 0 -chrXIII 671552 674538 HC_gene_7119_tx_30 1 - 671552 674538 . 2 1427,796 0,2191 -chrXIII 671552 674538 HC_gene_7119_tx_31 1 - 671552 674538 . 2 2322,379 0,2608 -chrXIII 671552 674822 HC_gene_7119_tx_32 58 - 671552 674822 . 1 3271 0 -chrXIII 671552 674822 HC_gene_7119_tx_33 1 - 671552 674822 . 2 2579,537 0,2734 -chrXIII 671552 674822 HC_gene_7119_tx_34 1 - 671552 674822 . 2 2664,537 0,2734 -chrXIII 671552 674822 HC_gene_7119_tx_35 1 - 671552 674822 . 2 2304,531 0,2740 -chrXIII 671552 674822 HC_gene_7119_tx_36 1 - 671552 674822 . 2 2139,607 0,2664 -chrXIII 671552 674822 HC_gene_7119_tx_37 1 - 671552 674822 . 2 1899,1333 0,1938 -chrXIII 671552 674822 HC_gene_7119_tx_38 1 - 671552 674822 . 2 2276,380 0,2891 -chrXIII 671552 674822 HC_gene_7119_tx_39 1 - 671552 674822 . 2 2316,510 0,2761 -chrXIII 671552 674822 HC_gene_7119_tx_40 1 - 671552 674822 . 2 1227,1509 0,1762 -chrXIII 671552 674925 HC_gene_7119_tx_41 1 - 671552 674925 . 2 2858,86 0,3288 -chrXIII 675008 675676 HC_gene_6770_tx_1 2 + 675008 675676 . 1 669 0 -chrXIII 675146 675676 HC_gene_6770_tx_2 1 + 675146 675676 . 1 531 0 -chrXIII 675510 675676 HC_gene_6770_tx_3 3 + 675510 675676 . 1 167 0 -chrXIII 675564 676654 MC_gene_7120_tx_1 1 - 675564 676654 . 1 1091 0 -chrXIII 675741 677077 HC_gene_6771_tx_1 3 + 675741 677077 . 1 1337 0 -chrXIII 675747 677016 MC_gene_7121_tx_1 1 - 675747 677016 . 1 1270 0 -chrXIII 675895 677077 HC_gene_6771_tx_2 1 + 675895 677077 . 1 1183 0 -chrXIII 675972 677077 HC_gene_6771_tx_3 1 + 675972 677077 . 1 1106 0 -chrXIII 676741 677077 HC_gene_6771_tx_4 9 + 676741 677077 . 1 337 0 -chrXIII 676807 677077 HC_gene_6771_tx_5 3 + 676807 677077 . 1 271 0 -chrXIII 676955 677811 MC_gene_7122_tx_1 1 - 676955 677811 . 1 857 0 -chrXIII 676985 677479 MC_gene_7122_tx_2 1 - 676985 677479 . 1 495 0 -chrXIII 677012 677557 MC_gene_7122_tx_3 1 - 677012 677557 . 1 546 0 -chrXIII 679689 680004 MC_gene_7123_tx_1 1 - 679689 680004 . 1 316 0 -chrXIII 680101 682579 MC_gene_7124_tx_1 1 - 680101 682579 . 1 2479 0 -chrXIII 681117 684000 MC_gene_7125_tx_1 1 - 681117 684000 . 1 2884 0 -chrXIII 684192 684485 HC_gene_6772_tx_1 1 + 684192 684485 . 1 294 0 -chrXIII 684192 685909 HC_gene_6772_tx_2 1 + 684192 685909 . 1 1718 0 -chrXIII 684448 685854 HC_gene_6772_tx_3 2 + 684448 685854 . 1 1407 0 -chrXIII 684448 685909 HC_gene_6772_tx_4 32 + 684448 685909 . 1 1462 0 -chrXIII 684448 685909 HC_gene_6772_tx_5 1 + 684448 685909 . 2 1324,54 0,1408 -chrXIII 684593 685909 HC_gene_6772_tx_6 3 + 684593 685909 . 1 1317 0 -chrXIII 685529 685854 HC_gene_6772_tx_7 1 + 685529 685854 . 1 326 0 -chrXIII 685529 685909 HC_gene_6772_tx_8 17 + 685529 685909 . 1 381 0 -chrXIII 685742 686503 HC_gene_7126_tx_1 8 - 685742 686503 . 1 762 0 -chrXIII 685742 686503 HC_gene_7126_tx_2 1 - 685742 686503 . 2 551,128 0,634 -chrXIII 685742 686989 HC_gene_7126_tx_3 2 - 685742 686989 . 1 1248 0 -chrXIII 685742 687309 HC_gene_7126_tx_4 17 - 685742 687309 . 1 1568 0 -chrXIII 686356 687309 HC_gene_7126_tx_5 1 - 686356 687309 . 1 954 0 -chrXIII 686357 687309 HC_gene_7126_tx_6 1 - 686357 687309 . 1 953 0 -chrXIII 686362 687309 HC_gene_7126_tx_7 1 - 686362 687309 . 1 948 0 -chrXIII 686367 687309 HC_gene_7126_tx_8 1 - 686367 687309 . 1 943 0 -chrXIII 686431 687459 LC_gene_6773_tx_1 1 + 686431 687459 . 1 1029 0 -chrXIII 687444 688847 HC_gene_7127_tx_1 3 - 687444 688847 . 1 1404 0 -chrXIII 687492 688941 HC_gene_6774_tx_1 12 + 687492 688941 . 1 1450 0 -chrXIII 687492 688941 HC_gene_6774_tx_2 1 + 687492 688941 . 2 769,582 0,868 -chrXIII 687713 688847 HC_gene_7127_tx_2 3 - 687713 688847 . 1 1135 0 -chrXIII 687802 688941 HC_gene_6774_tx_3 2 + 687802 688941 . 1 1140 0 -chrXIII 688130 688847 HC_gene_7127_tx_3 2 - 688130 688847 . 1 718 0 -chrXIII 688527 688941 HC_gene_6774_tx_4 5 + 688527 688941 . 1 415 0 -chrXIII 689064 690641 HC_gene_6775_tx_1 2 + 689064 690641 . 1 1578 0 -chrXIII 689064 690643 HC_gene_6775_tx_2 1 + 689064 690643 . 1 1580 0 -chrXIII 689064 690645 HC_gene_6775_tx_3 1 + 689064 690645 . 1 1582 0 -chrXIII 689064 690646 HC_gene_6775_tx_4 5 + 689064 690646 . 1 1583 0 -chrXIII 689064 690649 HC_gene_6775_tx_5 1 + 689064 690649 . 2 875,656 0,930 -chrXIII 689064 690661 HC_gene_6775_tx_6 1 + 689064 690661 . 1 1598 0 -chrXIII 689064 690779 HC_gene_6775_tx_7 2 + 689064 690779 . 1 1716 0 -chrXIII 689064 690927 HC_gene_6775_tx_8 1 + 689064 690927 . 1 1864 0 -chrXIII 690228 693190 HC_gene_7128_tx_1 1 - 690228 693190 . 1 2963 0 -chrXIII 690411 693190 HC_gene_7128_tx_2 1 - 690411 693190 . 1 2780 0 -chrXIII 690546 693190 HC_gene_7128_tx_3 19 - 690546 693190 . 1 2645 0 -chrXIII 692534 693190 HC_gene_7128_tx_4 1 - 692534 693190 . 1 657 0 -chrXIII 693328 695191 HC_gene_6776_tx_1 5 + 693328 695191 . 1 1864 0 -chrXIII 693328 695191 HC_gene_6776_tx_2 1 + 693328 695191 . 2 1061,724 0,1140 -chrXIII 694228 695191 HC_gene_6776_tx_3 1 + 694228 695191 . 1 964 0 -chrXIII 695330 695936 MC_gene_7129_tx_1 1 - 695330 695936 . 1 607 0 -chrXIII 695330 696548 HC_gene_6777_tx_1 50 + 695330 696548 . 1 1219 0 -chrXIII 695330 696548 HC_gene_6777_tx_2 1 + 695330 696548 . 2 540,584 0,635 -chrXIII 695330 696548 HC_gene_6777_tx_3 1 + 695330 696548 . 2 591,535 0,684 -chrXIII 695330 696741 HC_gene_6777_tx_4 10 + 695330 696741 . 1 1412 0 -chrXIII 695925 696548 HC_gene_6777_tx_5 9 + 695925 696548 . 1 624 0 -chrXIII 695995 696548 HC_gene_6777_tx_6 13 + 695995 696548 . 1 554 0 -chrXIII 696771 698420 HC_gene_6778_tx_1 5 + 696771 698420 . 1 1650 0 -chrXIII 696771 698503 HC_gene_6778_tx_2 61 + 696771 698503 . 1 1733 0 -chrXIII 696771 698592 HC_gene_6778_tx_3 4 + 696771 698592 . 1 1822 0 -chrXIII 697730 698503 HC_gene_6778_tx_4 31 + 697730 698503 . 1 774 0 -chrXIII 697730 698592 HC_gene_6778_tx_5 2 + 697730 698592 . 1 863 0 -chrXIII 698002 698503 HC_gene_6778_tx_6 15 + 698002 698503 . 1 502 0 -chrXIII 698029 698625 HC_gene_7130_tx_1 8 - 698029 698625 . 1 597 0 -chrXIII 698029 701207 HC_gene_7130_tx_2 1 - 698029 701207 . 1 3179 0 -chrXIII 698603 699780 HC_gene_7130_tx_17 3 - 698603 699780 . 1 1178 0 -chrXIII 698603 701183 HC_gene_7130_tx_3 1 - 698603 701183 . 1 2581 0 -chrXIII 698603 701192 HC_gene_7130_tx_4 1 - 698603 701192 . 1 2590 0 -chrXIII 698603 701207 HC_gene_7130_tx_5 1 - 698603 701207 . 2 1108,1367 0,1238 -chrXIII 698603 701207 HC_gene_7130_tx_6 5 - 698603 701207 . 1 2605 0 -chrXIII 698603 701207 HC_gene_7130_tx_7 1 - 698603 701207 . 2 992,1515 0,1090 -chrXIII 698603 701207 HC_gene_7130_tx_8 1 - 698603 701207 . 2 1144,1367 0,1238 -chrXIII 698603 701207 HC_gene_7130_tx_9 1 - 698603 701207 . 2 1201,1238 0,1367 -chrXIII 698603 701207 HC_gene_7130_tx_10 1 - 698603 701207 . 2 884,1525 0,1080 -chrXIII 698603 701207 HC_gene_7130_tx_11 1 - 698603 701207 . 2 1201,1342 0,1263 -chrXIII 698603 701215 HC_gene_7130_tx_12 1 - 698603 701215 . 1 2613 0 -chrXIII 698719 699780 HC_gene_7130_tx_18 8 - 698719 699780 . 1 1062 0 -chrXIII 698719 699780 HC_gene_7130_tx_19 1 - 698719 699780 . 2 744,238 0,824 -chrXIII 698719 700249 HC_gene_7130_tx_20 1 - 698719 700249 . 1 1531 0 -chrXIII 698719 700376 HC_gene_7130_tx_21 1 - 698719 700376 . 1 1658 0 -chrXIII 698719 700540 HC_gene_7130_tx_22 3 - 698719 700540 . 1 1822 0 -chrXIII 698719 701207 HC_gene_7130_tx_13 1 - 698719 701207 . 2 1066,1303 0,1186 -chrXIII 698719 701207 HC_gene_7130_tx_14 5 - 698719 701207 . 1 2489 0 -chrXIII 698719 701207 HC_gene_7130_tx_15 1 - 698719 701207 . 2 1056,1309 0,1180 -chrXIII 698719 701207 HC_gene_7130_tx_16 1 - 698719 701207 . 2 1103,1264 0,1225 -chrXIII 701730 703452 HC_gene_6779_tx_1 333 + 701730 703452 . 1 1723 0 -chrXIII 701730 703452 HC_gene_6779_tx_2 1 + 701730 703452 . 2 680,953 0,770 -chrXIII 701730 703452 HC_gene_6779_tx_3 1 + 701730 703452 . 2 1222,423 0,1300 -chrXIII 701730 703452 HC_gene_6779_tx_4 1 + 701730 703452 . 2 1066,593 0,1130 -chrXIII 701730 703452 HC_gene_6779_tx_5 1 + 701730 703452 . 2 1645,34 0,1689 -chrXIII 701730 703452 HC_gene_6779_tx_6 1 + 701730 703452 . 2 1144,501 0,1222 -chrXIII 701730 703452 HC_gene_6779_tx_7 1 + 701730 703452 . 2 113,1532 0,191 -chrXIII 701743 703452 HC_gene_6779_tx_8 1 + 701743 703452 . 2 310,1090 0,620 -chrXIII 701956 703452 HC_gene_6779_tx_9 25 + 701956 703452 . 1 1497 0 -chrXIII 701956 703452 HC_gene_6779_tx_10 1 + 701956 703452 . 2 1356,21 0,1476 -chrXIII 702049 703452 HC_gene_6779_tx_11 1 + 702049 703452 . 2 977,340 0,1064 -chrXIII 702049 703452 HC_gene_6779_tx_12 12 + 702049 703452 . 1 1404 0 -chrXIII 702141 703452 HC_gene_6779_tx_13 29 + 702141 703452 . 1 1312 0 -chrXIII 702616 703452 HC_gene_6779_tx_14 68 + 702616 703452 . 1 837 0 -chrXIII 702676 703452 HC_gene_6779_tx_15 18 + 702676 703452 . 1 777 0 -chrXIII 702768 703452 HC_gene_6779_tx_16 33 + 702768 703452 . 1 685 0 -chrXIII 702876 703452 HC_gene_6779_tx_17 70 + 702876 703452 . 1 577 0 -chrXIII 702954 703452 HC_gene_6779_tx_18 25 + 702954 703452 . 1 499 0 -chrXIII 703104 703452 HC_gene_6779_tx_19 69 + 703104 703452 . 1 349 0 -chrXIII 703359 706945 HC_gene_7131_tx_1 8 - 703359 706945 . 1 3587 0 -chrXIII 707089 712165 HC_gene_6780_tx_1 1 + 707089 712165 . 1 5077 0 -chrXIII 707428 712165 HC_gene_6780_tx_2 1 + 707428 712165 . 3 384,1317,2913 0,444,1825 -chrXIII 707428 712165 HC_gene_6780_tx_3 1 + 707428 712165 . 1 4738 0 -chrXIII 709991 710840 MC_gene_7132_tx_1 1 - 709991 710840 . 1 850 0 -chrXIII 710599 712165 HC_gene_6780_tx_4 1 + 710599 712165 . 2 719,782 0,785 -chrXIII 710599 712165 HC_gene_6780_tx_5 6 + 710599 712165 . 1 1567 0 -chrXIII 710954 711713 LC_gene_7133_tx_1 1 - 710954 711713 . 1 760 0 -chrXIII 711772 712165 HC_gene_6780_tx_6 8 + 711772 712165 . 1 394 0 -chrXIII 711836 712165 HC_gene_6780_tx_7 13 + 711836 712165 . 1 330 0 -chrXIII 712170 712727 MC_gene_7134_tx_1 1 - 712170 712727 . 1 558 0 -chrXIII 712297 713713 HC_gene_6781_tx_1 3 + 712297 713713 . 1 1417 0 -chrXIII 712297 713722 HC_gene_6781_tx_2 1 + 712297 713722 . 1 1426 0 -chrXIII 712297 713725 HC_gene_6781_tx_3 1 + 712297 713725 . 1 1429 0 -chrXIII 712297 713728 HC_gene_6781_tx_4 1 + 712297 713728 . 1 1432 0 -chrXIII 712297 713729 HC_gene_6781_tx_5 1 + 712297 713729 . 1 1433 0 -chrXIII 712297 713730 HC_gene_6781_tx_6 1 + 712297 713730 . 1 1434 0 -chrXIII 712297 713731 HC_gene_6781_tx_7 1 + 712297 713731 . 1 1435 0 -chrXIII 712297 713739 HC_gene_6781_tx_8 1 + 712297 713739 . 1 1443 0 -chrXIII 712297 713740 HC_gene_6781_tx_9 1 + 712297 713740 . 1 1444 0 -chrXIII 712297 713745 HC_gene_6781_tx_10 1 + 712297 713745 . 1 1449 0 -chrXIII 712297 713766 HC_gene_6781_tx_11 3 + 712297 713766 . 1 1470 0 -chrXIII 712297 713773 HC_gene_6781_tx_12 1 + 712297 713773 . 1 1477 0 -chrXIII 712297 713780 HC_gene_6781_tx_13 1 + 712297 713780 . 1 1484 0 -chrXIII 712297 713808 HC_gene_6781_tx_14 1 + 712297 713808 . 1 1512 0 -chrXIII 712297 713922 HC_gene_6781_tx_15 39 + 712297 713922 . 1 1626 0 -chrXIII 712297 713922 HC_gene_6781_tx_16 1 + 712297 713922 . 2 65,1123 0,503 -chrXIII 712511 713712 HC_gene_6781_tx_17 1 + 712511 713712 . 1 1202 0 -chrXIII 712511 713755 HC_gene_6781_tx_18 1 + 712511 713755 . 1 1245 0 -chrXIII 712511 713922 HC_gene_6781_tx_19 3 + 712511 713922 . 1 1412 0 -chrXIII 712931 713730 HC_gene_6781_tx_20 1 + 712931 713730 . 1 800 0 -chrXIII 712931 713746 HC_gene_6781_tx_21 1 + 712931 713746 . 1 816 0 -chrXIII 712931 713922 HC_gene_6781_tx_22 2 + 712931 713922 . 1 992 0 -chrXIII 713834 714386 HC_gene_7135_tx_1 7 - 713834 714386 . 1 553 0 -chrXIII 713834 715456 HC_gene_7135_tx_2 38 - 713834 715456 . 1 1623 0 -chrXIII 713834 715456 HC_gene_7135_tx_3 1 - 713834 715456 . 2 619,956 0,667 -chrXIII 715551 716136 HC_gene_7136_tx_1 5 - 715551 716136 . 1 586 0 -chrXIII 715551 716338 HC_gene_7136_tx_2 72 - 715551 716338 . 1 788 0 -chrXIII 715722 716338 HC_gene_7136_tx_3 3 - 715722 716338 . 1 617 0 -chrXIII 716491 718482 HC_gene_6782_tx_1 11 + 716491 718482 . 1 1992 0 -chrXIII 716491 718482 HC_gene_6782_tx_2 1 + 716491 718482 . 2 383,617 0,1375 -chrXIII 716491 718574 HC_gene_6782_tx_3 7 + 716491 718574 . 1 2084 0 -chrXIII 717830 719496 MC_gene_7137_tx_1 1 - 717830 719496 . 1 1667 0 -chrXIII 718072 720704 MC_gene_7138_tx_1 1 - 718072 720704 . 2 808,1752 0,881 -chrXIII 720464 720861 LC_gene_6783_tx_1 1 + 720464 720861 . 1 398 0 -chrXIII 720801 721199 HC_gene_7139_tx_1 38 - 720801 721199 . 1 399 0 -chrXIII 720801 721425 HC_gene_7139_tx_2 93 - 720801 721425 . 2 398,80 0,545 -chrXIII 720801 721425 HC_gene_7139_tx_3 6 - 720801 721425 . 2 392,80 0,545 -chrXIII 720801 721425 HC_gene_7139_tx_4 24 - 720801 721425 . 1 625 0 -chrXIII 720801 721425 HC_gene_7139_tx_5 1 - 720801 721425 . 2 302,80 0,545 -chrXIII 720801 721425 HC_gene_7139_tx_6 1 - 720801 721425 . 2 380,80 0,545 -chrXIII 720801 721425 HC_gene_7139_tx_7 2 - 720801 721425 . 2 385,84 0,541 -chrXIII 721363 722087 HC_gene_7140_tx_1 1 - 721363 722087 . 1 725 0 -chrXIII 721363 722429 HC_gene_7140_tx_2 1 - 721363 722429 . 1 1067 0 -chrXIII 721415 721810 MC_gene_6784_tx_1 1 + 721415 721810 . 1 396 0 -chrXIII 721531 721868 HC_gene_7140_tx_6 34 - 721531 721868 . 1 338 0 -chrXIII 721531 722087 HC_gene_7140_tx_7 31 - 721531 722087 . 1 557 0 -chrXIII 721531 722198 HC_gene_7140_tx_8 27 - 721531 722198 . 1 668 0 -chrXIII 721531 722429 HC_gene_7140_tx_3 197 - 721531 722429 . 1 899 0 -chrXIII 721531 722429 HC_gene_7140_tx_4 1 - 721531 722429 . 2 33,824 0,75 -chrXIII 721531 722429 HC_gene_7140_tx_5 1 - 721531 722429 . 2 641,148 0,751 -chrXIII 722513 722930 HC_gene_7141_tx_1 13 - 722513 722930 . 1 418 0 -chrXIII 722513 723105 HC_gene_7141_tx_2 6 - 722513 723105 . 1 593 0 -chrXIII 722513 723105 HC_gene_7141_tx_3 1 - 722513 723105 . 2 310,73 0,520 -chrXIII 722513 723613 HC_gene_7141_tx_4 1 - 722513 723613 . 1 1101 0 -chrXIII 722513 724433 HC_gene_7141_tx_5 7 - 722513 724433 . 1 1921 0 -chrXIII 724618 725761 HC_gene_6785_tx_1 24 + 724618 725761 . 1 1144 0 -chrXIII 724670 725599 LC_gene_7142_tx_1 1 - 724670 725599 . 1 930 0 -chrXIII 725628 726507 HC_gene_7143_tx_1 1 - 725628 726507 . 1 880 0 -chrXIII 725628 727250 HC_gene_7143_tx_2 1 - 725628 727250 . 1 1623 0 -chrXIII 725826 726386 HC_gene_7143_tx_7 90 - 725826 726386 . 1 561 0 -chrXIII 725826 726507 HC_gene_7143_tx_8 20 - 725826 726507 . 1 682 0 -chrXIII 725826 726621 HC_gene_7143_tx_9 15 - 725826 726621 . 1 796 0 -chrXIII 725826 726907 HC_gene_7143_tx_3 13 - 725826 726907 . 1 1082 0 -chrXIII 725826 727091 HC_gene_7143_tx_4 8 - 725826 727091 . 1 1266 0 -chrXIII 725826 727250 HC_gene_7143_tx_5 21 - 725826 727250 . 1 1425 0 -chrXIII 725826 727250 HC_gene_7143_tx_6 1 - 725826 727250 . 2 538,732 0,693 -chrXIII 725826 728458 HC_gene_7143_tx_10 2 - 725826 728458 . 1 2633 0 -chrXIII 725826 728613 HC_gene_7143_tx_11 5 - 725826 728613 . 1 2788 0 -chrXIII 725826 728613 HC_gene_7143_tx_12 1 - 725826 728613 . 2 2459,223 0,2565 -chrXIII 725826 728959 HC_gene_7143_tx_13 1 - 725826 728959 . 1 3134 0 -chrXIII 725826 729117 HC_gene_7143_tx_14 2 - 725826 729117 . 1 3292 0 -chrXIII 725826 729239 HC_gene_7143_tx_15 3 - 725826 729239 . 1 3414 0 -chrXIII 725826 729239 HC_gene_7143_tx_16 1 - 725826 729239 . 3 1713,394,622 0,1817,2792 -chrXIII 725826 730230 HC_gene_7143_tx_17 1 - 725826 730230 . 1 4405 0 -chrXIII 725826 730313 HC_gene_7143_tx_18 1 - 725826 730313 . 1 4488 0 -chrXIII 725826 730703 HC_gene_7143_tx_19 1 - 725826 730703 . 1 4878 0 -chrXIII 725826 731226 HC_gene_7143_tx_20 8 - 725826 731226 . 1 5401 0 -chrXIII 725826 731226 HC_gene_7143_tx_21 1 - 725826 731226 . 2 775,4528 0,873 -chrXIII 725826 731226 HC_gene_7143_tx_22 1 - 725826 731226 . 2 4074,1157 0,4244 -chrXIII 731441 731593 HC_gene_6786_tx_1 2 + 731441 731593 . 1 153 0 -chrXIII 731441 732160 HC_gene_6786_tx_2 9 + 731441 732160 . 1 720 0 -chrXIII 731465 732101 HC_gene_7144_tx_1 35 - 731465 732101 . 1 637 0 -chrXIII 732381 733196 HC_gene_6787_tx_1 11 + 732381 733196 . 2 85,321 0,495 -chrXIII 732381 733196 HC_gene_6787_tx_2 1 + 732381 733196 . 2 72,321 0,495 -chrXIII 732381 733197 HC_gene_6787_tx_3 5 + 732381 733197 . 2 85,322 0,495 -chrXIII 732381 733197 HC_gene_6787_tx_4 1 + 732381 733197 . 2 85,302 0,515 -chrXIII 732381 733198 HC_gene_6787_tx_5 23 + 732381 733198 . 2 85,323 0,495 -chrXIII 732381 733199 HC_gene_6787_tx_6 43 + 732381 733199 . 2 85,324 0,495 -chrXIII 732381 733199 HC_gene_6787_tx_7 2 + 732381 733199 . 1 819 0 -chrXIII 732381 733199 HC_gene_6787_tx_8 1 + 732381 733199 . 2 77,324 0,495 -chrXIII 732381 733199 HC_gene_6787_tx_9 1 + 732381 733199 . 2 85,321 0,498 -chrXIII 732381 733200 HC_gene_6787_tx_10 13 + 732381 733200 . 2 85,325 0,495 -chrXIII 732381 733201 HC_gene_6787_tx_11 40 + 732381 733201 . 2 85,326 0,495 -chrXIII 732381 733201 HC_gene_6787_tx_12 2 + 732381 733201 . 2 85,323 0,498 -chrXIII 732381 733201 HC_gene_6787_tx_13 1 + 732381 733201 . 1 821 0 -chrXIII 732381 733201 HC_gene_6787_tx_14 1 + 732381 733201 . 2 77,326 0,495 -chrXIII 732381 733202 HC_gene_6787_tx_15 37 + 732381 733202 . 2 85,327 0,495 -chrXIII 732381 733202 HC_gene_6787_tx_16 1 + 732381 733202 . 2 77,327 0,495 -chrXIII 732381 733202 HC_gene_6787_tx_17 1 + 732381 733202 . 1 822 0 -chrXIII 732381 733202 HC_gene_6787_tx_18 1 + 732381 733202 . 2 85,317 0,505 -chrXIII 732381 733202 HC_gene_6787_tx_19 2 + 732381 733202 . 2 85,324 0,498 -chrXIII 732381 733203 HC_gene_6787_tx_20 14 + 732381 733203 . 2 85,328 0,495 -chrXIII 732381 733204 HC_gene_6787_tx_21 64 + 732381 733204 . 2 85,329 0,495 -chrXIII 732381 733204 HC_gene_6787_tx_22 1 + 732381 733204 . 2 89,329 0,495 -chrXIII 732381 733204 HC_gene_6787_tx_23 1 + 732381 733204 . 2 85,326 0,498 -chrXIII 732381 733204 HC_gene_6787_tx_24 1 + 732381 733204 . 2 70,329 0,495 -chrXIII 732381 733204 HC_gene_6787_tx_25 2 + 732381 733204 . 1 824 0 -chrXIII 732381 733204 HC_gene_6787_tx_26 1 + 732381 733204 . 2 77,329 0,495 -chrXIII 732381 733205 HC_gene_6787_tx_27 8 + 732381 733205 . 2 85,330 0,495 -chrXIII 732381 733206 HC_gene_6787_tx_28 14 + 732381 733206 . 2 85,331 0,495 -chrXIII 732381 733207 HC_gene_6787_tx_29 1 + 732381 733207 . 2 85,332 0,495 -chrXIII 732381 733208 HC_gene_6787_tx_30 1 + 732381 733208 . 2 85,333 0,495 -chrXIII 732381 733214 HC_gene_6787_tx_31 3 + 732381 733214 . 2 85,339 0,495 -chrXIII 732381 733215 HC_gene_6787_tx_32 2 + 732381 733215 . 2 85,340 0,495 -chrXIII 732381 733216 HC_gene_6787_tx_33 4 + 732381 733216 . 2 85,341 0,495 -chrXIII 732381 733216 HC_gene_6787_tx_34 2 + 732381 733216 . 1 836 0 -chrXIII 732381 733216 HC_gene_6787_tx_35 1 + 732381 733216 . 2 85,338 0,498 -chrXIII 732381 733217 HC_gene_6787_tx_36 5 + 732381 733217 . 2 85,342 0,495 -chrXIII 732381 733217 HC_gene_6787_tx_37 2 + 732381 733217 . 1 837 0 -chrXIII 732381 733218 HC_gene_6787_tx_38 2 + 732381 733218 . 2 85,343 0,495 -chrXIII 732381 733220 HC_gene_6787_tx_39 5 + 732381 733220 . 2 85,345 0,495 -chrXIII 732381 733220 HC_gene_6787_tx_40 1 + 732381 733220 . 2 77,345 0,495 -chrXIII 732381 733221 HC_gene_6787_tx_41 2 + 732381 733221 . 2 85,346 0,495 -chrXIII 732381 733222 HC_gene_6787_tx_42 2 + 732381 733222 . 2 85,347 0,495 -chrXIII 732381 733223 HC_gene_6787_tx_43 1 + 732381 733223 . 2 85,348 0,495 -chrXIII 732381 733224 HC_gene_6787_tx_44 7 + 732381 733224 . 2 85,349 0,495 -chrXIII 732381 733224 HC_gene_6787_tx_45 1 + 732381 733224 . 2 85,346 0,498 -chrXIII 732381 733225 HC_gene_6787_tx_46 6 + 732381 733225 . 2 85,350 0,495 -chrXIII 732381 733225 HC_gene_6787_tx_47 1 + 732381 733225 . 2 77,350 0,495 -chrXIII 732381 733225 HC_gene_6787_tx_48 1 + 732381 733225 . 2 85,347 0,498 -chrXIII 732381 733226 HC_gene_6787_tx_49 13 + 732381 733226 . 2 85,351 0,495 -chrXIII 732381 733228 HC_gene_6787_tx_50 4 + 732381 733228 . 2 85,353 0,495 -chrXIII 732381 733229 HC_gene_6787_tx_51 3 + 732381 733229 . 2 85,354 0,495 -chrXIII 732381 733229 HC_gene_6787_tx_52 1 + 732381 733229 . 1 849 0 -chrXIII 732381 733230 HC_gene_6787_tx_53 5 + 732381 733230 . 2 85,355 0,495 -chrXIII 732381 733230 HC_gene_6787_tx_54 1 + 732381 733230 . 2 85,352 0,498 -chrXIII 732381 733231 HC_gene_6787_tx_55 2 + 732381 733231 . 2 85,356 0,495 -chrXIII 732381 733232 HC_gene_6787_tx_56 1 + 732381 733232 . 2 77,357 0,495 -chrXIII 732381 733232 HC_gene_6787_tx_57 6 + 732381 733232 . 2 85,354 0,498 -chrXIII 732381 733232 HC_gene_6787_tx_58 28 + 732381 733232 . 2 85,357 0,495 -chrXIII 732381 733232 HC_gene_6787_tx_59 1 + 732381 733232 . 1 852 0 -chrXIII 732381 733232 HC_gene_6787_tx_60 1 + 732381 733232 . 2 393,357 0,495 -chrXIII 732381 733233 HC_gene_6787_tx_61 1 + 732381 733233 . 2 85,355 0,498 -chrXIII 732381 733233 HC_gene_6787_tx_62 11 + 732381 733233 . 2 85,358 0,495 -chrXIII 732381 733234 HC_gene_6787_tx_63 7 + 732381 733234 . 2 85,359 0,495 -chrXIII 732381 733234 HC_gene_6787_tx_64 1 + 732381 733234 . 2 65,359 0,495 -chrXIII 732381 733234 HC_gene_6787_tx_65 1 + 732381 733234 . 1 854 0 -chrXIII 732381 733235 HC_gene_6787_tx_66 13 + 732381 733235 . 2 85,360 0,495 -chrXIII 732381 733236 HC_gene_6787_tx_67 135 + 732381 733236 . 2 85,361 0,495 -chrXIII 732381 733236 HC_gene_6787_tx_68 2 + 732381 733236 . 2 67,361 0,495 -chrXIII 732381 733236 HC_gene_6787_tx_69 14 + 732381 733236 . 2 85,358 0,498 -chrXIII 732381 733236 HC_gene_6787_tx_70 6 + 732381 733236 . 2 77,361 0,495 -chrXIII 732381 733236 HC_gene_6787_tx_71 1 + 732381 733236 . 2 74,379 0,477 -chrXIII 732381 733236 HC_gene_6787_tx_72 1 + 732381 733236 . 2 56,361 0,495 -chrXIII 732381 733236 HC_gene_6787_tx_73 1 + 732381 733236 . 2 68,361 0,495 -chrXIII 732381 733236 HC_gene_6787_tx_74 1 + 732381 733236 . 2 85,353 0,503 -chrXIII 732381 733236 HC_gene_6787_tx_75 1 + 732381 733236 . 2 73,361 0,495 -chrXIII 732381 733236 HC_gene_6787_tx_76 1 + 732381 733236 . 2 64,361 0,495 -chrXIII 732381 733237 HC_gene_6787_tx_77 3 + 732381 733237 . 1 857 0 -chrXIII 732381 733237 HC_gene_6787_tx_78 140 + 732381 733237 . 2 85,362 0,495 -chrXIII 732381 733237 HC_gene_6787_tx_79 8 + 732381 733237 . 2 85,359 0,498 -chrXIII 732381 733237 HC_gene_6787_tx_80 2 + 732381 733237 . 2 77,362 0,495 -chrXIII 732381 733238 HC_gene_6787_tx_81 298 + 732381 733238 . 2 85,363 0,495 -chrXIII 732381 733238 HC_gene_6787_tx_82 18 + 732381 733238 . 2 85,360 0,498 -chrXIII 732381 733238 HC_gene_6787_tx_83 1 + 732381 733238 . 2 68,363 0,495 -chrXIII 732381 733238 HC_gene_6787_tx_84 1 + 732381 733238 . 3 85,266,53 0,495,805 -chrXIII 732381 733238 HC_gene_6787_tx_85 4 + 732381 733238 . 1 858 0 -chrXIII 732381 733238 HC_gene_6787_tx_86 6 + 732381 733238 . 2 77,363 0,495 -chrXIII 732381 733238 HC_gene_6787_tx_87 1 + 732381 733238 . 2 67,363 0,495 -chrXIII 732381 733238 HC_gene_6787_tx_88 1 + 732381 733238 . 2 72,363 0,495 -chrXIII 732381 733238 HC_gene_6787_tx_89 1 + 732381 733238 . 2 77,360 0,498 -chrXIII 732381 733239 HC_gene_6787_tx_90 4 + 732381 733239 . 2 85,364 0,495 -chrXIII 732381 733239 HC_gene_6787_tx_91 1 + 732381 733239 . 2 85,361 0,498 -chrXIII 732381 733240 HC_gene_6787_tx_92 29 + 732381 733240 . 2 85,365 0,495 -chrXIII 732381 733241 HC_gene_6787_tx_93 3 + 732381 733241 . 2 85,366 0,495 -chrXIII 732381 733241 HC_gene_6787_tx_94 1 + 732381 733241 . 2 77,366 0,495 -chrXIII 732381 733242 HC_gene_6787_tx_95 3 + 732381 733242 . 2 85,367 0,495 -chrXIII 732381 733243 HC_gene_6787_tx_96 22 + 732381 733243 . 2 85,368 0,495 -chrXIII 732381 733243 HC_gene_6787_tx_97 2 + 732381 733243 . 2 85,365 0,498 -chrXIII 732381 733243 HC_gene_6787_tx_98 1 + 732381 733243 . 1 863 0 -chrXIII 732381 733244 HC_gene_6787_tx_99 18 + 732381 733244 . 2 85,369 0,495 -chrXIII 732381 733244 HC_gene_6787_tx_100 1 + 732381 733244 . 2 85,366 0,498 -chrXIII 732381 733244 HC_gene_6787_tx_101 1 + 732381 733244 . 2 67,369 0,495 -chrXIII 732381 733244 HC_gene_6787_tx_102 1 + 732381 733244 . 1 864 0 -chrXIII 732381 733245 HC_gene_6787_tx_103 35 + 732381 733245 . 2 85,370 0,495 -chrXIII 732381 733245 HC_gene_6787_tx_104 1 + 732381 733245 . 2 73,370 0,495 -chrXIII 732381 733246 HC_gene_6787_tx_105 2 + 732381 733246 . 2 85,371 0,495 -chrXIII 732381 733247 HC_gene_6787_tx_106 4 + 732381 733247 . 2 85,372 0,495 -chrXIII 732381 733248 HC_gene_6787_tx_107 12 + 732381 733248 . 2 85,373 0,495 -chrXIII 732381 733249 HC_gene_6787_tx_108 4 + 732381 733249 . 2 85,374 0,495 -chrXIII 732381 733250 HC_gene_6787_tx_109 30 + 732381 733250 . 2 85,375 0,495 -chrXIII 732381 733250 HC_gene_6787_tx_110 2 + 732381 733250 . 2 77,375 0,495 -chrXIII 732381 733250 HC_gene_6787_tx_111 1 + 732381 733250 . 2 85,372 0,498 -chrXIII 732381 733251 HC_gene_6787_tx_112 5 + 732381 733251 . 2 85,376 0,495 -chrXIII 732381 733252 HC_gene_6787_tx_113 18 + 732381 733252 . 2 85,377 0,495 -chrXIII 732381 733252 HC_gene_6787_tx_114 1 + 732381 733252 . 2 85,354 0,518 -chrXIII 732381 733252 HC_gene_6787_tx_115 1 + 732381 733252 . 2 77,377 0,495 -chrXIII 732381 733253 HC_gene_6787_tx_116 8 + 732381 733253 . 2 85,378 0,495 -chrXIII 732381 733253 HC_gene_6787_tx_117 1 + 732381 733253 . 2 85,370 0,503 -chrXIII 732381 733253 HC_gene_6787_tx_118 1 + 732381 733253 . 2 85,375 0,498 -chrXIII 732381 733254 HC_gene_6787_tx_119 27 + 732381 733254 . 2 85,379 0,495 -chrXIII 732381 733254 HC_gene_6787_tx_120 2 + 732381 733254 . 2 77,379 0,495 -chrXIII 732381 733254 HC_gene_6787_tx_121 1 + 732381 733254 . 1 874 0 -chrXIII 732381 733255 HC_gene_6787_tx_122 76 + 732381 733255 . 2 85,380 0,495 -chrXIII 732381 733255 HC_gene_6787_tx_123 5 + 732381 733255 . 2 85,377 0,498 -chrXIII 732381 733255 HC_gene_6787_tx_124 1 + 732381 733255 . 2 67,380 0,495 -chrXIII 732381 733255 HC_gene_6787_tx_125 1 + 732381 733255 . 2 77,380 0,495 -chrXIII 732381 733256 HC_gene_6787_tx_126 6 + 732381 733256 . 2 85,381 0,495 -chrXIII 732381 733257 HC_gene_6787_tx_127 6 + 732381 733257 . 2 85,382 0,495 -chrXIII 732381 733257 HC_gene_6787_tx_128 1 + 732381 733257 . 2 77,382 0,495 -chrXIII 732381 733258 HC_gene_6787_tx_129 6 + 732381 733258 . 2 85,383 0,495 -chrXIII 732381 733259 HC_gene_6787_tx_130 1 + 732381 733259 . 2 85,384 0,495 -chrXIII 732381 733260 HC_gene_6787_tx_131 2 + 732381 733260 . 2 85,385 0,495 -chrXIII 732381 733260 HC_gene_6787_tx_132 1 + 732381 733260 . 2 77,385 0,495 -chrXIII 732381 733261 HC_gene_6787_tx_133 4 + 732381 733261 . 2 85,386 0,495 -chrXIII 732381 733262 HC_gene_6787_tx_134 2 + 732381 733262 . 2 85,387 0,495 -chrXIII 732381 733263 HC_gene_6787_tx_135 4 + 732381 733263 . 2 85,388 0,495 -chrXIII 732381 733263 HC_gene_6787_tx_136 1 + 732381 733263 . 2 85,385 0,498 -chrXIII 732381 733263 HC_gene_6787_tx_137 1 + 732381 733263 . 2 77,388 0,495 -chrXIII 732381 733265 HC_gene_6787_tx_138 4 + 732381 733265 . 2 85,390 0,495 -chrXIII 732381 733265 HC_gene_6787_tx_139 1 + 732381 733265 . 2 85,387 0,498 -chrXIII 732381 733268 HC_gene_6787_tx_140 3 + 732381 733268 . 2 85,393 0,495 -chrXIII 732381 733269 HC_gene_6787_tx_141 5 + 732381 733269 . 2 85,394 0,495 -chrXIII 732381 733276 HC_gene_6787_tx_142 1 + 732381 733276 . 2 85,401 0,495 -chrXIII 732381 733278 HC_gene_6787_tx_143 1 + 732381 733278 . 1 898 0 -chrXIII 732381 733281 HC_gene_6787_tx_144 1 + 732381 733281 . 2 85,406 0,495 -chrXIII 732381 733282 HC_gene_6787_tx_145 1 + 732381 733282 . 2 85,407 0,495 -chrXIII 732381 733283 HC_gene_6787_tx_146 1 + 732381 733283 . 2 85,408 0,495 -chrXIII 732381 733284 HC_gene_6787_tx_147 1 + 732381 733284 . 2 85,406 0,498 -chrXIII 732381 733284 HC_gene_6787_tx_148 3 + 732381 733284 . 2 85,409 0,495 -chrXIII 732381 733285 HC_gene_6787_tx_149 2 + 732381 733285 . 2 85,410 0,495 -chrXIII 732381 733286 HC_gene_6787_tx_150 1 + 732381 733286 . 2 85,411 0,495 -chrXIII 732381 733287 HC_gene_6787_tx_151 1 + 732381 733287 . 2 85,412 0,495 -chrXIII 732381 733288 HC_gene_6787_tx_152 2 + 732381 733288 . 2 85,413 0,495 -chrXIII 732381 733291 HC_gene_6787_tx_153 1 + 732381 733291 . 2 85,416 0,495 -chrXIII 732381 733295 HC_gene_6787_tx_154 1 + 732381 733295 . 2 85,420 0,495 -chrXIII 732381 733296 HC_gene_6787_tx_155 1 + 732381 733296 . 2 85,418 0,498 -chrXIII 732381 733297 HC_gene_6787_tx_156 3 + 732381 733297 . 2 85,422 0,495 -chrXIII 732381 733298 HC_gene_6787_tx_157 1 + 732381 733298 . 2 85,423 0,495 -chrXIII 732381 733299 HC_gene_6787_tx_158 13 + 732381 733299 . 2 85,424 0,495 -chrXIII 732381 733299 HC_gene_6787_tx_159 2 + 732381 733299 . 2 85,421 0,498 -chrXIII 732381 733299 HC_gene_6787_tx_160 1 + 732381 733299 . 2 85,455 0,464 -chrXIII 732381 733299 HC_gene_6787_tx_161 1 + 732381 733299 . 1 919 0 -chrXIII 732381 733300 HC_gene_6787_tx_162 7 + 732381 733300 . 2 85,425 0,495 -chrXIII 732381 733301 HC_gene_6787_tx_163 5 + 732381 733301 . 2 85,426 0,495 -chrXIII 732381 733302 HC_gene_6787_tx_164 1 + 732381 733302 . 2 85,427 0,495 -chrXIII 732381 733303 HC_gene_6787_tx_165 8 + 732381 733303 . 2 85,428 0,495 -chrXIII 732381 733305 HC_gene_6787_tx_166 1 + 732381 733305 . 2 85,430 0,495 -chrXIII 732381 733306 HC_gene_6787_tx_167 1 + 732381 733306 . 2 85,431 0,495 -chrXIII 732381 733307 HC_gene_6787_tx_168 3 + 732381 733307 . 2 85,432 0,495 -chrXIII 732381 733309 HC_gene_6787_tx_169 1 + 732381 733309 . 2 85,434 0,495 -chrXIII 732381 733311 HC_gene_6787_tx_170 1 + 732381 733311 . 2 85,436 0,495 -chrXIII 732381 733314 HC_gene_6787_tx_171 6 + 732381 733314 . 2 85,439 0,495 -chrXIII 732381 733316 HC_gene_6787_tx_172 2 + 732381 733316 . 2 85,441 0,495 -chrXIII 732381 733317 HC_gene_6787_tx_173 1 + 732381 733317 . 2 85,442 0,495 -chrXIII 732381 733319 HC_gene_6787_tx_174 1 + 732381 733319 . 2 85,444 0,495 -chrXIII 732381 733321 HC_gene_6787_tx_175 5 + 732381 733321 . 2 85,446 0,495 -chrXIII 732381 733324 HC_gene_6787_tx_176 1 + 732381 733324 . 2 85,449 0,495 -chrXIII 732381 733326 HC_gene_6787_tx_177 1 + 732381 733326 . 2 85,451 0,495 -chrXIII 732381 733328 HC_gene_6787_tx_178 1 + 732381 733328 . 2 85,453 0,495 -chrXIII 732381 733439 HC_gene_6787_tx_179 2 + 732381 733439 . 2 85,198 0,861 -chrXIII 732381 733439 HC_gene_6787_tx_180 26 + 732381 733439 . 2 85,564 0,495 -chrXIII 732381 733439 HC_gene_6787_tx_181 3 + 732381 733439 . 2 85,561 0,498 -chrXIII 732381 733439 HC_gene_6787_tx_182 11 + 732381 733439 . 1 1059 0 -chrXIII 732381 733439 HC_gene_6787_tx_183 1 + 732381 733439 . 2 85,190 0,869 -chrXIII 732879 733196 HC_gene_6787_tx_184 5 + 732879 733196 . 1 318 0 -chrXIII 732879 733198 HC_gene_6787_tx_185 11 + 732879 733198 . 1 320 0 -chrXIII 732879 733199 HC_gene_6787_tx_186 10 + 732879 733199 . 1 321 0 -chrXIII 732879 733200 HC_gene_6787_tx_187 4 + 732879 733200 . 1 322 0 -chrXIII 732879 733201 HC_gene_6787_tx_188 16 + 732879 733201 . 1 323 0 -chrXIII 732879 733202 HC_gene_6787_tx_189 14 + 732879 733202 . 1 324 0 -chrXIII 732879 733203 HC_gene_6787_tx_190 7 + 732879 733203 . 1 325 0 -chrXIII 732879 733204 HC_gene_6787_tx_191 23 + 732879 733204 . 1 326 0 -chrXIII 732879 733205 HC_gene_6787_tx_192 2 + 732879 733205 . 1 327 0 -chrXIII 732879 733206 HC_gene_6787_tx_193 2 + 732879 733206 . 1 328 0 -chrXIII 732879 733207 HC_gene_6787_tx_194 1 + 732879 733207 . 1 329 0 -chrXIII 732879 733214 HC_gene_6787_tx_195 1 + 732879 733214 . 1 336 0 -chrXIII 732879 733215 HC_gene_6787_tx_196 1 + 732879 733215 . 1 337 0 -chrXIII 732879 733216 HC_gene_6787_tx_197 4 + 732879 733216 . 1 338 0 -chrXIII 732879 733217 HC_gene_6787_tx_198 3 + 732879 733217 . 1 339 0 -chrXIII 732879 733219 HC_gene_6787_tx_199 2 + 732879 733219 . 1 341 0 -chrXIII 732879 733220 HC_gene_6787_tx_200 3 + 732879 733220 . 1 342 0 -chrXIII 732879 733224 HC_gene_6787_tx_201 2 + 732879 733224 . 1 346 0 -chrXIII 732879 733225 HC_gene_6787_tx_202 3 + 732879 733225 . 1 347 0 -chrXIII 732879 733226 HC_gene_6787_tx_203 3 + 732879 733226 . 1 348 0 -chrXIII 732879 733228 HC_gene_6787_tx_204 2 + 732879 733228 . 1 350 0 -chrXIII 732879 733231 HC_gene_6787_tx_205 3 + 732879 733231 . 1 353 0 -chrXIII 732879 733232 HC_gene_6787_tx_206 6 + 732879 733232 . 1 354 0 -chrXIII 732879 733233 HC_gene_6787_tx_207 4 + 732879 733233 . 1 355 0 -chrXIII 732879 733234 HC_gene_6787_tx_208 2 + 732879 733234 . 1 356 0 -chrXIII 732879 733235 HC_gene_6787_tx_209 4 + 732879 733235 . 1 357 0 -chrXIII 732879 733236 HC_gene_6787_tx_210 37 + 732879 733236 . 1 358 0 -chrXIII 732879 733237 HC_gene_6787_tx_211 42 + 732879 733237 . 1 359 0 -chrXIII 732879 733238 HC_gene_6787_tx_212 98 + 732879 733238 . 1 360 0 -chrXIII 732879 733239 HC_gene_6787_tx_213 6 + 732879 733239 . 1 361 0 -chrXIII 732879 733240 HC_gene_6787_tx_214 6 + 732879 733240 . 1 362 0 -chrXIII 732879 733241 HC_gene_6787_tx_215 2 + 732879 733241 . 1 363 0 -chrXIII 732879 733243 HC_gene_6787_tx_216 9 + 732879 733243 . 1 365 0 -chrXIII 732879 733244 HC_gene_6787_tx_217 7 + 732879 733244 . 1 366 0 -chrXIII 732879 733245 HC_gene_6787_tx_218 15 + 732879 733245 . 1 367 0 -chrXIII 732879 733247 HC_gene_6787_tx_219 1 + 732879 733247 . 1 369 0 -chrXIII 732879 733248 HC_gene_6787_tx_220 4 + 732879 733248 . 1 370 0 -chrXIII 732879 733249 HC_gene_6787_tx_221 3 + 732879 733249 . 1 371 0 -chrXIII 732879 733250 HC_gene_6787_tx_222 12 + 732879 733250 . 1 372 0 -chrXIII 732879 733252 HC_gene_6787_tx_223 9 + 732879 733252 . 1 374 0 -chrXIII 732879 733253 HC_gene_6787_tx_224 8 + 732879 733253 . 1 375 0 -chrXIII 732879 733254 HC_gene_6787_tx_225 5 + 732879 733254 . 1 376 0 -chrXIII 732879 733255 HC_gene_6787_tx_226 24 + 732879 733255 . 1 377 0 -chrXIII 732879 733257 HC_gene_6787_tx_227 1 + 732879 733257 . 1 379 0 -chrXIII 732879 733258 HC_gene_6787_tx_228 2 + 732879 733258 . 1 380 0 -chrXIII 732879 733259 HC_gene_6787_tx_229 1 + 732879 733259 . 1 381 0 -chrXIII 732879 733261 HC_gene_6787_tx_230 1 + 732879 733261 . 1 383 0 -chrXIII 732879 733263 HC_gene_6787_tx_231 1 + 732879 733263 . 1 385 0 -chrXIII 732879 733268 HC_gene_6787_tx_232 1 + 732879 733268 . 1 390 0 -chrXIII 732879 733269 HC_gene_6787_tx_233 3 + 732879 733269 . 1 391 0 -chrXIII 732879 733283 HC_gene_6787_tx_234 1 + 732879 733283 . 1 405 0 -chrXIII 732879 733284 HC_gene_6787_tx_235 2 + 732879 733284 . 1 406 0 -chrXIII 732879 733285 HC_gene_6787_tx_236 1 + 732879 733285 . 1 407 0 -chrXIII 732879 733286 HC_gene_6787_tx_237 3 + 732879 733286 . 1 408 0 -chrXIII 732879 733287 HC_gene_6787_tx_238 1 + 732879 733287 . 1 409 0 -chrXIII 732879 733288 HC_gene_6787_tx_239 2 + 732879 733288 . 1 410 0 -chrXIII 732879 733289 HC_gene_6787_tx_240 1 + 732879 733289 . 1 411 0 -chrXIII 732879 733290 HC_gene_6787_tx_241 1 + 732879 733290 . 1 412 0 -chrXIII 732879 733294 HC_gene_6787_tx_242 1 + 732879 733294 . 1 416 0 -chrXIII 732879 733298 HC_gene_6787_tx_243 3 + 732879 733298 . 1 420 0 -chrXIII 732879 733299 HC_gene_6787_tx_244 4 + 732879 733299 . 1 421 0 -chrXIII 732879 733303 HC_gene_6787_tx_245 1 + 732879 733303 . 1 425 0 -chrXIII 732879 733304 HC_gene_6787_tx_246 1 + 732879 733304 . 1 426 0 -chrXIII 732879 733307 HC_gene_6787_tx_247 3 + 732879 733307 . 1 429 0 -chrXIII 732879 733311 HC_gene_6787_tx_248 1 + 732879 733311 . 1 433 0 -chrXIII 732879 733316 HC_gene_6787_tx_249 1 + 732879 733316 . 1 438 0 -chrXIII 732879 733317 HC_gene_6787_tx_250 1 + 732879 733317 . 1 439 0 -chrXIII 732879 733318 HC_gene_6787_tx_251 1 + 732879 733318 . 1 440 0 -chrXIII 732879 733319 HC_gene_6787_tx_252 1 + 732879 733319 . 1 441 0 -chrXIII 732879 733321 HC_gene_6787_tx_253 2 + 732879 733321 . 1 443 0 -chrXIII 732879 733439 HC_gene_6787_tx_254 5 + 732879 733439 . 1 561 0 -chrXIII 732979 733439 HC_gene_6787_tx_255 1 + 732979 733439 . 1 461 0 -chrXIII 733516 736824 HC_gene_6788_tx_1 8 + 733516 736824 . 1 3309 0 -chrXIII 733516 736824 HC_gene_6788_tx_2 1 + 733516 736824 . 2 1947,1277 0,2032 -chrXIII 735128 736140 LC_gene_7145_tx_1 1 - 735128 736140 . 1 1013 0 -chrXIII 736094 736824 HC_gene_6788_tx_3 4 + 736094 736824 . 1 731 0 -chrXIII 738142 738964 LC_gene_7146_tx_1 1 - 738142 738964 . 1 823 0 -chrXIII 739168 740047 HC_gene_6789_tx_1 32 + 739168 740047 . 1 880 0 -chrXIII 740173 741419 HC_gene_6790_tx_1 28 + 740173 741419 . 1 1247 0 -chrXIII 740184 740761 LC_gene_7147_tx_1 1 - 740184 740761 . 1 578 0 -chrXIII 740465 741419 HC_gene_6790_tx_2 2 + 740465 741419 . 1 955 0 -chrXIII 741338 741681 HC_gene_7148_tx_1 44 - 741338 741681 . 1 344 0 -chrXIII 741338 741784 HC_gene_7148_tx_2 67 - 741338 741784 . 1 447 0 -chrXIII 741338 741784 HC_gene_7148_tx_3 1 - 741338 741784 . 2 73,241 0,206 -chrXIII 741338 741784 HC_gene_7148_tx_4 1 - 741338 741784 . 2 218,127 0,320 -chrXIII 741338 741959 HC_gene_7148_tx_5 16 - 741338 741959 . 1 622 0 -chrXIII 741338 742083 HC_gene_7148_tx_6 21 - 741338 742083 . 1 746 0 -chrXIII 741338 742276 HC_gene_7148_tx_7 48 - 741338 742276 . 1 939 0 -chrXIII 741338 742760 HC_gene_7148_tx_9 133 - 741338 742760 . 1 1423 0 -chrXIII 741338 742760 HC_gene_7148_tx_10 1 - 741338 742760 . 2 802,371 0,1052 -chrXIII 741338 742760 HC_gene_7148_tx_11 1 - 741338 742760 . 2 66,1261 0,162 -chrXIII 741338 742760 HC_gene_7148_tx_12 1 - 741338 742760 . 2 840,273 0,1150 -chrXIII 741338 742760 HC_gene_7148_tx_13 1 - 741338 742760 . 2 161,1198 0,225 -chrXIII 741338 742760 HC_gene_7148_tx_14 1 - 741338 742760 . 2 822,539 0,884 -chrXIII 741462 742276 HC_gene_7148_tx_8 1 - 741462 742276 . 1 815 0 -chrXIII 742960 743492 HC_gene_6791_tx_1 161 + 742960 743492 . 1 533 0 -chrXIII 742960 743658 HC_gene_6791_tx_2 20 + 742960 743658 . 1 699 0 -chrXIII 743181 743492 HC_gene_6791_tx_3 19 + 743181 743492 . 1 312 0 -chrXIII 743181 743658 HC_gene_6791_tx_4 2 + 743181 743658 . 1 478 0 -chrXIII 743677 746068 HC_gene_6792_tx_1 22 + 743677 746068 . 1 2392 0 -chrXIII 743677 746068 HC_gene_6792_tx_2 1 + 743677 746068 . 2 75,2227 0,165 -chrXIII 746244 747814 HC_gene_6793_tx_1 1 + 746244 747814 . 2 284,1242 0,329 -chrXIII 746315 747814 HC_gene_6793_tx_2 79 + 746315 747814 . 1 1500 0 -chrXIII 746315 747814 HC_gene_6793_tx_3 1 + 746315 747814 . 2 769,661 0,839 -chrXIII 746315 747814 HC_gene_6793_tx_4 1 + 746315 747814 . 2 777,614 0,886 -chrXIII 746315 747814 HC_gene_6793_tx_5 1 + 746315 747814 . 2 768,678 0,822 -chrXIII 746315 747814 HC_gene_6793_tx_6 1 + 746315 747814 . 2 743,673 0,827 -chrXIII 746315 747814 HC_gene_6793_tx_7 1 + 746315 747814 . 2 756,672 0,828 -chrXIII 746315 747814 HC_gene_6793_tx_8 1 + 746315 747814 . 2 351,1105 0,395 -chrXIII 746315 747814 HC_gene_6793_tx_9 1 + 746315 747814 . 2 160,722 0,778 -chrXIII 746315 747814 HC_gene_6793_tx_10 1 + 746315 747814 . 2 719,702 0,798 -chrXIII 746315 747814 HC_gene_6793_tx_11 1 + 746315 747814 . 2 85,1338 0,162 -chrXIII 746315 747814 HC_gene_6793_tx_12 1 + 746315 747814 . 2 893,549 0,951 -chrXIII 746425 747814 HC_gene_6793_tx_13 3 + 746425 747814 . 1 1390 0 -chrXIII 746527 747814 HC_gene_6793_tx_14 11 + 746527 747814 . 1 1288 0 -chrXIII 746711 747814 HC_gene_6793_tx_15 9 + 746711 747814 . 1 1104 0 -chrXIII 746793 747814 HC_gene_6793_tx_16 5 + 746793 747814 . 1 1022 0 -chrXIII 746889 747632 LC_gene_7149_tx_1 1 - 746889 747632 . 1 744 0 -chrXIII 747724 747958 MC_gene_7150_tx_1 1 - 747724 747958 . 1 235 0 -chrXIII 748112 749728 HC_gene_7151_tx_1 19 - 748112 749728 . 1 1617 0 -chrXIII 748112 749728 HC_gene_7151_tx_2 1 - 748112 749728 . 2 66,1463 0,154 -chrXIII 748112 749728 HC_gene_7151_tx_3 1 - 748112 749728 . 2 956,545 0,1072 -chrXIII 749878 751072 HC_gene_7152_tx_1 2 - 749878 751072 . 1 1195 0 -chrXIII 749878 751300 HC_gene_7152_tx_2 16 - 749878 751300 . 1 1423 0 -chrXIII 749878 751300 HC_gene_7152_tx_3 1 - 749878 751300 . 2 65,1274 0,149 -chrXIII 749878 751633 HC_gene_7152_tx_4 2 - 749878 751633 . 1 1756 0 -chrXIII 749925 750413 LC_gene_6794_tx_1 1 + 749925 750413 . 1 489 0 -chrXIII 751815 751955 HC_gene_6795_tx_1 2 + 751815 751955 . 1 141 0 -chrXIII 751815 752958 HC_gene_6795_tx_2 225 + 751815 752958 . 1 1144 0 -chrXIII 751815 752958 HC_gene_6795_tx_3 1 + 751815 752958 . 2 175,630 0,514 -chrXIII 751815 752958 HC_gene_6795_tx_4 1 + 751815 752958 . 2 73,958 0,186 -chrXIII 751815 752958 HC_gene_6795_tx_5 1 + 751815 752958 . 2 368,528 0,616 -chrXIII 751934 752958 HC_gene_6795_tx_6 75 + 751934 752958 . 1 1025 0 -chrXIII 751934 752958 HC_gene_6795_tx_7 1 + 751934 752958 . 2 250,549 0,476 -chrXIII 751934 752958 HC_gene_6795_tx_8 1 + 751934 752958 . 2 42,492 0,533 -chrXIII 751934 752958 HC_gene_6795_tx_9 1 + 751934 752958 . 2 229,661 0,364 -chrXIII 752070 752958 HC_gene_6795_tx_10 26 + 752070 752958 . 1 889 0 -chrXIII 752349 752958 HC_gene_6795_tx_11 73 + 752349 752958 . 1 610 0 -chrXIII 752349 752958 HC_gene_6795_tx_12 1 + 752349 752958 . 2 197,325 0,285 -chrXIII 753102 753510 HC_gene_7153_tx_1 509 - 753102 753510 . 1 409 0 -chrXIII 753102 753752 HC_gene_7153_tx_2 1647 - 753102 753752 . 1 651 0 -chrXIII 753102 754242 HC_gene_7153_tx_3 67 - 753102 754242 . 1 1141 0 -chrXIII 754395 754821 MC_gene_6796_tx_1 1 + 754395 754821 . 1 427 0 -chrXIII 754624 755218 HC_gene_7154_tx_1 22 - 754624 755218 . 1 595 0 -chrXIII 754624 755315 HC_gene_7154_tx_2 35 - 754624 755315 . 1 692 0 -chrXIII 754624 755805 HC_gene_7154_tx_3 18 - 754624 755805 . 1 1182 0 -chrXIII 754624 756001 HC_gene_7154_tx_4 16 - 754624 756001 . 1 1378 0 -chrXIII 754624 756278 HC_gene_7154_tx_5 171 - 754624 756278 . 1 1655 0 -chrXIII 754624 756278 HC_gene_7154_tx_6 1 - 754624 756278 . 2 899,686 0,969 -chrXIII 754624 756278 HC_gene_7154_tx_7 1 - 754624 756278 . 2 662,529 0,1126 -chrXIII 754624 756278 HC_gene_7154_tx_8 1 - 754624 756278 . 2 164,1331 0,324 -chrXIII 754624 756278 HC_gene_7154_tx_9 1 - 754624 756278 . 3 1094,90,262 0,1161,1393 -chrXIII 754624 756278 HC_gene_7154_tx_10 1 - 754624 756278 . 2 429,1126 0,529 -chrXIII 757125 757626 LC_gene_7155_tx_1 1 - 757125 757626 . 1 502 0 -chrXIII 758401 758531 HC_gene_7156_tx_1 1 - 758401 758531 . 1 131 0 -chrXIII 758401 758636 HC_gene_7156_tx_2 6 - 758401 758636 . 1 236 0 -chrXIII 758401 758883 HC_gene_7156_tx_3 142 - 758401 758883 . 1 483 0 -chrXIII 758401 759128 HC_gene_7156_tx_4 6 - 758401 759128 . 1 728 0 -chrXIII 758401 759331 HC_gene_7156_tx_5 1 - 758401 759331 . 1 931 0 -chrXIII 758435 758958 HC_gene_6797_tx_1 3 + 758435 758958 . 1 524 0 -chrXIII 758817 759128 HC_gene_7156_tx_6 23 - 758817 759128 . 1 312 0 -chrXIII 758817 759331 HC_gene_7156_tx_7 5 - 758817 759331 . 1 515 0 -chrXIII 759579 761917 HC_gene_6798_tx_1 1 + 759579 761917 . 1 2339 0 -chrXIII 759579 761939 HC_gene_6798_tx_2 1 + 759579 761939 . 1 2361 0 -chrXIII 759579 761940 HC_gene_6798_tx_3 1 + 759579 761940 . 1 2362 0 -chrXIII 759579 761953 HC_gene_6798_tx_4 1 + 759579 761953 . 1 2375 0 -chrXIII 759579 761958 HC_gene_6798_tx_5 1 + 759579 761958 . 1 2380 0 -chrXIII 759579 761960 HC_gene_6798_tx_6 1 + 759579 761960 . 1 2382 0 -chrXIII 759579 761963 HC_gene_6798_tx_7 3 + 759579 761963 . 1 2385 0 -chrXIII 759579 761970 HC_gene_6798_tx_8 1 + 759579 761970 . 1 2392 0 -chrXIII 759579 761975 HC_gene_6798_tx_9 1 + 759579 761975 . 1 2397 0 -chrXIII 759579 761978 HC_gene_6798_tx_10 1 + 759579 761978 . 1 2400 0 -chrXIII 759579 761979 HC_gene_6798_tx_11 1 + 759579 761979 . 2 634,1709 0,692 -chrXIII 759579 761989 HC_gene_6798_tx_12 1 + 759579 761989 . 1 2411 0 -chrXIII 759579 762064 HC_gene_6798_tx_13 114 + 759579 762064 . 1 2486 0 -chrXIII 759579 762064 HC_gene_6798_tx_14 1 + 759579 762064 . 2 1744,612 0,1874 -chrXIII 759579 762064 HC_gene_6798_tx_15 1 + 759579 762064 . 2 2395,48 0,2438 -chrXIII 759579 762064 HC_gene_6798_tx_16 1 + 759579 762064 . 2 1560,813 0,1673 -chrXIII 759579 762064 HC_gene_6798_tx_17 1 + 759579 762064 . 2 1338,1047 0,1439 -chrXIII 759579 762064 HC_gene_6798_tx_18 1 + 759579 762064 . 2 993,1393 0,1093 -chrXIII 759579 762064 HC_gene_6798_tx_19 1 + 759579 762064 . 2 1450,987 0,1499 -chrXIII 759579 762064 HC_gene_6798_tx_20 1 + 759579 762064 . 2 1338,1091 0,1395 -chrXIII 759579 762064 HC_gene_6798_tx_21 1 + 759579 762064 . 2 1382,1047 0,1439 -chrXIII 759718 761943 HC_gene_6798_tx_22 1 + 759718 761943 . 2 1390,773 0,1453 -chrXIII 759718 762064 HC_gene_6798_tx_23 6 + 759718 762064 . 1 2347 0 -chrXIII 759718 762064 HC_gene_6798_tx_24 1 + 759718 762064 . 2 2169,125 0,2222 -chrXIII 759798 761941 HC_gene_6798_tx_25 1 + 759798 761941 . 1 2144 0 -chrXIII 759798 761958 HC_gene_6798_tx_26 1 + 759798 761958 . 1 2161 0 -chrXIII 759798 761970 HC_gene_6798_tx_27 2 + 759798 761970 . 1 2173 0 -chrXIII 759798 761975 HC_gene_6798_tx_28 1 + 759798 761975 . 1 2178 0 -chrXIII 759798 761979 HC_gene_6798_tx_29 1 + 759798 761979 . 1 2182 0 -chrXIII 759798 761980 HC_gene_6798_tx_30 1 + 759798 761980 . 1 2183 0 -chrXIII 759798 761987 HC_gene_6798_tx_31 1 + 759798 761987 . 1 2190 0 -chrXIII 759798 762064 HC_gene_6798_tx_32 37 + 759798 762064 . 1 2267 0 -chrXIII 759798 762064 HC_gene_6798_tx_33 1 + 759798 762064 . 2 1136,811 0,1456 -chrXIII 759798 762064 HC_gene_6798_tx_34 1 + 759798 762064 . 2 1316,899 0,1368 -chrXIII 759798 762064 HC_gene_6798_tx_35 1 + 759798 762064 . 2 166,2009 0,258 -chrXIII 759798 762064 HC_gene_6798_tx_36 1 + 759798 762064 . 2 1274,894 0,1373 -chrXIII 759798 762064 HC_gene_6798_tx_37 1 + 759798 762064 . 2 1134,1054 0,1213 -chrXIII 759966 762064 HC_gene_6798_tx_38 13 + 759966 762064 . 1 2099 0 -chrXIII 760040 761931 HC_gene_6798_tx_39 1 + 760040 761931 . 1 1892 0 -chrXIII 760040 761948 HC_gene_6798_tx_40 1 + 760040 761948 . 1 1909 0 -chrXIII 760040 761970 HC_gene_6798_tx_41 1 + 760040 761970 . 1 1931 0 -chrXIII 760040 761972 HC_gene_6798_tx_42 1 + 760040 761972 . 1 1933 0 -chrXIII 760040 761978 HC_gene_6798_tx_43 1 + 760040 761978 . 1 1939 0 -chrXIII 760040 762064 HC_gene_6798_tx_44 14 + 760040 762064 . 1 2025 0 -chrXIII 760296 762064 HC_gene_6798_tx_45 18 + 760296 762064 . 1 1769 0 -chrXIII 760296 762064 HC_gene_6798_tx_46 1 + 760296 762064 . 2 718,794 0,975 -chrXIII 761180 761947 HC_gene_6798_tx_47 1 + 761180 761947 . 1 768 0 -chrXIII 761180 761969 HC_gene_6798_tx_48 1 + 761180 761969 . 1 790 0 -chrXIII 761180 761970 HC_gene_6798_tx_49 1 + 761180 761970 . 1 791 0 -chrXIII 761180 761980 HC_gene_6798_tx_50 1 + 761180 761980 . 1 801 0 -chrXIII 761180 761982 HC_gene_6798_tx_51 1 + 761180 761982 . 1 803 0 -chrXIII 761180 762064 HC_gene_6798_tx_52 37 + 761180 762064 . 1 885 0 -chrXIII 761872 762400 HC_gene_7157_tx_1 1 - 761872 762400 . 1 529 0 -chrXIII 761872 763112 HC_gene_7157_tx_3 4 - 761872 763112 . 1 1241 0 -chrXIII 761872 763248 HC_gene_7157_tx_4 1 - 761872 763248 . 1 1377 0 -chrXIII 761963 762400 HC_gene_7157_tx_2 29 - 761963 762400 . 1 438 0 -chrXIII 761963 762795 HC_gene_7157_tx_13 15 - 761963 762795 . 1 833 0 -chrXIII 761963 763112 HC_gene_7157_tx_5 52 - 761963 763112 . 1 1150 0 -chrXIII 761963 763248 HC_gene_7157_tx_6 52 - 761963 763248 . 1 1286 0 -chrXIII 761963 763248 HC_gene_7157_tx_7 1 - 761963 763248 . 2 525,669 0,617 -chrXIII 761963 763248 HC_gene_7157_tx_8 1 - 761963 763248 . 2 491,379 0,907 -chrXIII 761963 763248 HC_gene_7157_tx_9 1 - 761963 763248 . 2 526,183 0,1103 -chrXIII 762065 762400 HC_gene_7157_tx_15 3 - 762065 762400 . 1 336 0 -chrXIII 762065 762795 HC_gene_7157_tx_14 5 - 762065 762795 . 1 731 0 -chrXIII 762065 763112 HC_gene_7157_tx_10 9 - 762065 763112 . 1 1048 0 -chrXIII 762065 763248 HC_gene_7157_tx_11 18 - 762065 763248 . 1 1184 0 -chrXIII 762065 763248 HC_gene_7157_tx_12 1 - 762065 763248 . 2 151,563 0,621 -chrXIII 762987 763248 HC_gene_7157_tx_16 5 - 762987 763248 . 1 262 0 -chrXIII 763340 763801 HC_gene_6799_tx_1 1 + 763340 763801 . 1 462 0 -chrXIII 763340 763804 HC_gene_6799_tx_2 1 + 763340 763804 . 1 465 0 -chrXIII 763340 763807 HC_gene_6799_tx_3 1 + 763340 763807 . 1 468 0 -chrXIII 763340 763813 HC_gene_6799_tx_4 1 + 763340 763813 . 1 474 0 -chrXIII 763340 763948 HC_gene_6799_tx_5 9 + 763340 763948 . 1 609 0 -chrXIII 763340 764265 HC_gene_6799_tx_6 1 + 763340 764265 . 1 926 0 -chrXIII 763362 766004 LC_gene_7158_tx_1 1 - 763362 766004 . 1 2643 0 -chrXIII 766069 768110 HC_gene_7159_tx_1 1 - 766069 768110 . 1 2042 0 -chrXIII 768690 770499 MC_gene_7160_tx_1 1 - 768690 770499 . 1 1810 0 -chrXIII 768691 770417 MC_gene_7160_tx_2 1 - 768691 770417 . 1 1727 0 -chrXIII 768815 770338 MC_gene_7160_tx_3 1 - 768815 770338 . 1 1524 0 -chrXIII 770757 772671 HC_gene_6800_tx_1 11 + 770757 772671 . 1 1915 0 -chrXIII 770757 772871 HC_gene_6800_tx_2 3 + 770757 772871 . 1 2115 0 -chrXIII 770997 772671 HC_gene_6800_tx_3 2 + 770997 772671 . 1 1675 0 -chrXIII 770997 772871 HC_gene_6800_tx_4 1 + 770997 772871 . 1 1875 0 -chrXIII 771050 772671 HC_gene_6800_tx_5 1 + 771050 772671 . 1 1622 0 -chrXIII 771050 772871 HC_gene_6800_tx_6 1 + 771050 772871 . 1 1822 0 -chrXIII 771708 772671 HC_gene_6800_tx_7 4 + 771708 772671 . 1 964 0 -chrXIII 771940 772671 HC_gene_6800_tx_8 3 + 771940 772671 . 1 732 0 -chrXIII 772217 772671 HC_gene_6800_tx_9 3 + 772217 772671 . 1 455 0 -chrXIII 772762 773270 HC_gene_7161_tx_1 1 - 772762 773270 . 1 509 0 -chrXIII 772762 773563 HC_gene_7161_tx_2 3 - 772762 773563 . 1 802 0 -chrXIII 773645 774013 MC_gene_7162_tx_1 1 - 773645 774013 . 1 369 0 -chrXIII 774127 775216 HC_gene_6801_tx_1 49 + 774127 775216 . 1 1090 0 -chrXIII 774369 775069 MC_gene_7163_tx_1 1 - 774369 775069 . 1 701 0 -chrXIII 774710 775216 HC_gene_6801_tx_2 2659 + 774710 775216 . 1 507 0 -chrXIII 774872 775216 HC_gene_6801_tx_3 164 + 774872 775216 . 1 345 0 -chrXIII 774981 775216 HC_gene_6801_tx_4 43 + 774981 775216 . 1 236 0 -chrXIII 775131 775735 HC_gene_7164_tx_1 56 - 775131 775735 . 1 605 0 -chrXIII 775131 775735 HC_gene_7164_tx_2 1 - 775131 775735 . 2 217,111 0,494 -chrXIII 775131 776045 HC_gene_7164_tx_3 3 - 775131 776045 . 1 915 0 -chrXIII 775131 776615 HC_gene_7164_tx_4 1 - 775131 776615 . 1 1485 0 -chrXIII 775131 777203 HC_gene_7164_tx_5 13 - 775131 777203 . 1 2073 0 -chrXIII 775236 775901 MC_gene_6802_tx_1 1 + 775236 775901 . 1 666 0 -chrXIII 775916 777203 HC_gene_7164_tx_6 5 - 775916 777203 . 1 1288 0 -chrXIII 775976 776856 HC_gene_6803_tx_1 6 + 775976 776856 . 1 881 0 -chrXIII 776785 777203 HC_gene_7164_tx_7 13 - 776785 777203 . 1 419 0 -chrXIII 777337 778692 HC_gene_6804_tx_1 1 + 777337 778692 . 1 1356 0 -chrXIII 777337 778844 HC_gene_6804_tx_2 1 + 777337 778844 . 1 1508 0 -chrXIII 777679 777822 HC_gene_6804_tx_3 1 + 777679 777822 . 1 144 0 -chrXIII 777679 778692 HC_gene_6804_tx_4 5 + 777679 778692 . 1 1014 0 -chrXIII 777679 778844 HC_gene_6804_tx_5 2 + 777679 778844 . 1 1166 0 -chrXIII 777836 778692 HC_gene_6804_tx_6 2 + 777836 778692 . 1 857 0 -chrXIII 777948 778692 HC_gene_6804_tx_7 83 + 777948 778692 . 1 745 0 -chrXIII 777948 778692 HC_gene_6804_tx_8 1 + 777948 778692 . 2 556,112 0,633 -chrXIII 777948 778844 HC_gene_6804_tx_9 23 + 777948 778844 . 1 897 0 -chrXIII 778251 778692 HC_gene_6804_tx_10 10 + 778251 778692 . 1 442 0 -chrXIII 778251 778844 HC_gene_6804_tx_11 1 + 778251 778844 . 1 594 0 -chrXIII 778666 779165 HC_gene_7165_tx_1 10 - 778666 779165 . 1 500 0 -chrXIII 778773 779165 HC_gene_7165_tx_2 310 - 778773 779165 . 1 393 0 -chrXIII 778845 779165 HC_gene_7165_tx_3 58 - 778845 779165 . 1 321 0 -chrXIII 779008 779192 MC_gene_6805_tx_1 1 + 779008 779192 . 1 185 0 -chrXIII 779282 782420 HC_gene_7166_tx_1 1 - 779282 782420 . 1 3139 0 -chrXIII 779387 782420 HC_gene_7166_tx_2 1 - 779387 782420 . 1 3034 0 -chrXIII 782563 783203 HC_gene_7167_tx_1 2 - 782563 783203 . 1 641 0 -chrXIII 782563 783954 HC_gene_7167_tx_2 2 - 782563 783954 . 1 1392 0 -chrXIII 782563 784088 HC_gene_7167_tx_3 1 - 782563 784088 . 1 1526 0 -chrXIII 782563 784330 HC_gene_7167_tx_4 9 - 782563 784330 . 1 1768 0 -chrXIII 784516 785061 HC_gene_6806_tx_1 7 + 784516 785061 . 1 546 0 -chrXIII 784569 788943 HC_gene_7168_tx_1 2 - 784569 788943 . 1 4375 0 -chrXIII 784569 788943 HC_gene_7168_tx_2 1 - 784569 788943 . 2 1169,3163 0,1212 -chrXIII 787552 788943 HC_gene_7168_tx_3 2 - 787552 788943 . 1 1392 0 -chrXIII 789008 789297 MC_gene_6807_tx_1 1 + 789008 789297 . 1 290 0 -chrXIII 789056 789625 HC_gene_7169_tx_1 1 - 789056 789625 . 1 570 0 -chrXIII 789056 789865 HC_gene_7169_tx_37 4 - 789056 789865 . 1 810 0 -chrXIII 789057 789449 MC_gene_6808_tx_1 1 + 789057 789449 . 1 393 0 -chrXIII 789169 789625 HC_gene_7169_tx_2 1 - 789169 789625 . 1 457 0 -chrXIII 789169 789865 HC_gene_7169_tx_38 3 - 789169 789865 . 1 697 0 -chrXIII 789170 789865 HC_gene_7169_tx_39 1 - 789170 789865 . 1 696 0 -chrXIII 789175 789865 HC_gene_7169_tx_40 1 - 789175 789865 . 1 691 0 -chrXIII 789180 789865 HC_gene_7169_tx_41 1 - 789180 789865 . 1 686 0 -chrXIII 789186 789865 HC_gene_7169_tx_42 4 - 789186 789865 . 1 680 0 -chrXIII 789187 789865 HC_gene_7169_tx_43 1 - 789187 789865 . 1 679 0 -chrXIII 789188 789865 HC_gene_7169_tx_44 1 - 789188 789865 . 1 678 0 -chrXIII 789195 789865 HC_gene_7169_tx_45 2 - 789195 789865 . 1 671 0 -chrXIII 789196 789865 HC_gene_7169_tx_46 7 - 789196 789865 . 1 670 0 -chrXIII 789197 789865 HC_gene_7169_tx_47 3 - 789197 789865 . 1 669 0 -chrXIII 789198 789865 HC_gene_7169_tx_48 3 - 789198 789865 . 1 668 0 -chrXIII 789199 789865 HC_gene_7169_tx_49 3 - 789199 789865 . 1 667 0 -chrXIII 789200 789865 HC_gene_7169_tx_50 1 - 789200 789865 . 1 666 0 -chrXIII 789201 789865 HC_gene_7169_tx_51 5 - 789201 789865 . 1 665 0 -chrXIII 789202 789625 HC_gene_7169_tx_3 1 - 789202 789625 . 1 424 0 -chrXIII 789202 789865 HC_gene_7169_tx_52 15 - 789202 789865 . 1 664 0 -chrXIII 789203 789625 HC_gene_7169_tx_4 2 - 789203 789625 . 1 423 0 -chrXIII 789203 789865 HC_gene_7169_tx_53 7 - 789203 789865 . 1 663 0 -chrXIII 789204 789625 HC_gene_7169_tx_5 1 - 789204 789625 . 1 422 0 -chrXIII 789204 789865 HC_gene_7169_tx_54 20 - 789204 789865 . 1 662 0 -chrXIII 789206 789865 HC_gene_7169_tx_55 3 - 789206 789865 . 1 660 0 -chrXIII 789207 789865 HC_gene_7169_tx_56 6 - 789207 789865 . 1 659 0 -chrXIII 789209 789865 HC_gene_7169_tx_57 2 - 789209 789865 . 1 657 0 -chrXIII 789210 789625 HC_gene_7169_tx_6 1 - 789210 789625 . 1 416 0 -chrXIII 789210 789865 HC_gene_7169_tx_58 4 - 789210 789865 . 1 656 0 -chrXIII 789211 789625 HC_gene_7169_tx_7 1 - 789211 789625 . 1 415 0 -chrXIII 789211 789865 HC_gene_7169_tx_59 3 - 789211 789865 . 1 655 0 -chrXIII 789212 789865 HC_gene_7169_tx_60 1 - 789212 789865 . 1 654 0 -chrXIII 789213 789625 HC_gene_7169_tx_8 10 - 789213 789625 . 1 413 0 -chrXIII 789213 789865 HC_gene_7169_tx_61 106 - 789213 789865 . 1 653 0 -chrXIII 789215 789625 HC_gene_7169_tx_9 1 - 789215 789625 . 1 411 0 -chrXIII 789215 789865 HC_gene_7169_tx_62 6 - 789215 789865 . 1 651 0 -chrXIII 789216 789625 HC_gene_7169_tx_10 24 - 789216 789625 . 1 410 0 -chrXIII 789216 789865 HC_gene_7169_tx_63 169 - 789216 789865 . 1 650 0 -chrXIII 789217 789625 HC_gene_7169_tx_11 1 - 789217 789625 . 1 409 0 -chrXIII 789217 789865 HC_gene_7169_tx_64 6 - 789217 789865 . 1 649 0 -chrXIII 789218 789625 HC_gene_7169_tx_12 2 - 789218 789625 . 1 408 0 -chrXIII 789218 789865 HC_gene_7169_tx_65 31 - 789218 789865 . 1 648 0 -chrXIII 789219 789625 HC_gene_7169_tx_13 4 - 789219 789625 . 1 407 0 -chrXIII 789219 789865 HC_gene_7169_tx_66 48 - 789219 789865 . 1 647 0 -chrXIII 789220 789865 HC_gene_7169_tx_67 20 - 789220 789865 . 1 646 0 -chrXIII 789221 789865 HC_gene_7169_tx_68 7 - 789221 789865 . 1 645 0 -chrXIII 789222 789865 HC_gene_7169_tx_69 6 - 789222 789865 . 1 644 0 -chrXIII 789223 789625 HC_gene_7169_tx_14 6 - 789223 789625 . 1 403 0 -chrXIII 789223 789865 HC_gene_7169_tx_70 40 - 789223 789865 . 1 643 0 -chrXIII 789224 789625 HC_gene_7169_tx_15 5 - 789224 789625 . 1 402 0 -chrXIII 789224 789865 HC_gene_7169_tx_71 65 - 789224 789865 . 1 642 0 -chrXIII 789225 789625 HC_gene_7169_tx_16 5 - 789225 789625 . 1 401 0 -chrXIII 789225 789865 HC_gene_7169_tx_72 53 - 789225 789865 . 1 641 0 -chrXIII 789226 789625 HC_gene_7169_tx_17 4 - 789226 789625 . 1 400 0 -chrXIII 789226 789865 HC_gene_7169_tx_73 9 - 789226 789865 . 1 640 0 -chrXIII 789227 789625 HC_gene_7169_tx_18 1 - 789227 789625 . 1 399 0 -chrXIII 789227 789865 HC_gene_7169_tx_74 16 - 789227 789865 . 1 639 0 -chrXIII 789228 789625 HC_gene_7169_tx_19 1 - 789228 789625 . 1 398 0 -chrXIII 789228 789865 HC_gene_7169_tx_75 3 - 789228 789865 . 1 638 0 -chrXIII 789229 789865 HC_gene_7169_tx_76 7 - 789229 789865 . 1 637 0 -chrXIII 789230 789625 HC_gene_7169_tx_20 7 - 789230 789625 . 1 396 0 -chrXIII 789230 789865 HC_gene_7169_tx_77 71 - 789230 789865 . 1 636 0 -chrXIII 789231 789625 HC_gene_7169_tx_21 1 - 789231 789625 . 1 395 0 -chrXIII 789231 789865 HC_gene_7169_tx_78 52 - 789231 789865 . 1 635 0 -chrXIII 789232 789865 HC_gene_7169_tx_79 4 - 789232 789865 . 1 634 0 -chrXIII 789233 789625 HC_gene_7169_tx_22 2 - 789233 789625 . 1 393 0 -chrXIII 789233 789865 HC_gene_7169_tx_80 8 - 789233 789865 . 1 633 0 -chrXIII 789234 789625 HC_gene_7169_tx_23 1 - 789234 789625 . 1 392 0 -chrXIII 789234 789865 HC_gene_7169_tx_81 5 - 789234 789865 . 1 632 0 -chrXIII 789235 789865 HC_gene_7169_tx_82 1 - 789235 789865 . 1 631 0 -chrXIII 789237 789865 HC_gene_7169_tx_83 1 - 789237 789865 . 1 629 0 -chrXIII 789238 789625 HC_gene_7169_tx_24 1 - 789238 789625 . 1 388 0 -chrXIII 789238 789865 HC_gene_7169_tx_84 5 - 789238 789865 . 1 628 0 -chrXIII 789239 789865 HC_gene_7169_tx_85 1 - 789239 789865 . 1 627 0 -chrXIII 789240 789625 HC_gene_7169_tx_25 1 - 789240 789625 . 1 386 0 -chrXIII 789240 789865 HC_gene_7169_tx_86 7 - 789240 789865 . 1 626 0 -chrXIII 789241 789865 HC_gene_7169_tx_87 49 - 789241 789865 . 1 625 0 -chrXIII 789241 789865 HC_gene_7169_tx_88 1 - 789241 789865 . 2 32,542 0,83 -chrXIII 789242 789625 HC_gene_7169_tx_26 2 - 789242 789625 . 1 384 0 -chrXIII 789242 789865 HC_gene_7169_tx_89 19 - 789242 789865 . 1 624 0 -chrXIII 789243 789865 HC_gene_7169_tx_90 2 - 789243 789865 . 1 623 0 -chrXIII 789244 789865 HC_gene_7169_tx_91 1 - 789244 789865 . 1 622 0 -chrXIII 789245 789865 HC_gene_7169_tx_92 4 - 789245 789865 . 1 621 0 -chrXIII 789246 789865 HC_gene_7169_tx_93 1 - 789246 789865 . 1 620 0 -chrXIII 789247 789865 HC_gene_7169_tx_94 2 - 789247 789865 . 1 619 0 -chrXIII 789248 789625 HC_gene_7169_tx_27 1 - 789248 789625 . 1 378 0 -chrXIII 789249 789865 HC_gene_7169_tx_95 2 - 789249 789865 . 1 617 0 -chrXIII 789250 789865 HC_gene_7169_tx_96 1 - 789250 789865 . 2 42,502 0,114 -chrXIII 789251 789625 HC_gene_7169_tx_28 1 - 789251 789625 . 1 375 0 -chrXIII 789252 789865 HC_gene_7169_tx_97 2 - 789252 789865 . 1 614 0 -chrXIII 789253 789625 HC_gene_7169_tx_29 1 - 789253 789625 . 1 373 0 -chrXIII 789253 789865 HC_gene_7169_tx_98 8 - 789253 789865 . 1 613 0 -chrXIII 789254 789865 HC_gene_7169_tx_99 8 - 789254 789865 . 1 612 0 -chrXIII 789255 789865 HC_gene_7169_tx_100 3 - 789255 789865 . 1 611 0 -chrXIII 789256 789865 HC_gene_7169_tx_101 4 - 789256 789865 . 1 610 0 -chrXIII 789257 789865 HC_gene_7169_tx_102 1 - 789257 789865 . 1 609 0 -chrXIII 789259 789865 HC_gene_7169_tx_103 2 - 789259 789865 . 1 607 0 -chrXIII 789260 789865 HC_gene_7169_tx_104 1 - 789260 789865 . 1 606 0 -chrXIII 789261 789865 HC_gene_7169_tx_105 2 - 789261 789865 . 1 605 0 -chrXIII 789262 789865 HC_gene_7169_tx_106 4 - 789262 789865 . 1 604 0 -chrXIII 789263 789625 HC_gene_7169_tx_30 1 - 789263 789625 . 1 363 0 -chrXIII 789263 789865 HC_gene_7169_tx_107 2 - 789263 789865 . 1 603 0 -chrXIII 789264 789865 HC_gene_7169_tx_108 2 - 789264 789865 . 1 602 0 -chrXIII 789265 789865 HC_gene_7169_tx_109 1 - 789265 789865 . 1 601 0 -chrXIII 789267 789625 HC_gene_7169_tx_31 1 - 789267 789625 . 1 359 0 -chrXIII 789268 789625 HC_gene_7169_tx_32 1 - 789268 789625 . 1 358 0 -chrXIII 789268 789865 HC_gene_7169_tx_110 5 - 789268 789865 . 1 598 0 -chrXIII 789270 789865 HC_gene_7169_tx_111 2 - 789270 789865 . 1 596 0 -chrXIII 789272 789865 HC_gene_7169_tx_112 1 - 789272 789865 . 1 594 0 -chrXIII 789274 789865 HC_gene_7169_tx_113 1 - 789274 789865 . 1 592 0 -chrXIII 789276 789865 HC_gene_7169_tx_114 2 - 789276 789865 . 1 590 0 -chrXIII 789277 789865 HC_gene_7169_tx_115 5 - 789277 789865 . 1 589 0 -chrXIII 789278 789865 HC_gene_7169_tx_116 7 - 789278 789865 . 1 588 0 -chrXIII 789279 789625 HC_gene_7169_tx_33 1 - 789279 789625 . 1 347 0 -chrXIII 789279 789865 HC_gene_7169_tx_117 6 - 789279 789865 . 1 587 0 -chrXIII 789280 789865 HC_gene_7169_tx_118 2 - 789280 789865 . 1 586 0 -chrXIII 789281 789625 HC_gene_7169_tx_34 2 - 789281 789625 . 1 345 0 -chrXIII 789281 789865 HC_gene_7169_tx_119 30 - 789281 789865 . 1 585 0 -chrXIII 789282 789865 HC_gene_7169_tx_120 20 - 789282 789865 . 1 584 0 -chrXIII 789283 789865 HC_gene_7169_tx_121 5 - 789283 789865 . 1 583 0 -chrXIII 789286 789865 HC_gene_7169_tx_122 7 - 789286 789865 . 1 580 0 -chrXIII 789287 789865 HC_gene_7169_tx_123 2 - 789287 789865 . 1 579 0 -chrXIII 789288 789865 HC_gene_7169_tx_124 2 - 789288 789865 . 1 578 0 -chrXIII 789289 789865 HC_gene_7169_tx_125 5 - 789289 789865 . 1 577 0 -chrXIII 789290 789865 HC_gene_7169_tx_126 3 - 789290 789865 . 1 576 0 -chrXIII 789291 789865 HC_gene_7169_tx_127 6 - 789291 789865 . 1 575 0 -chrXIII 789292 789865 HC_gene_7169_tx_128 5 - 789292 789865 . 1 574 0 -chrXIII 789293 789865 HC_gene_7169_tx_129 3 - 789293 789865 . 1 573 0 -chrXIII 789294 789625 HC_gene_7169_tx_35 1 - 789294 789625 . 1 332 0 -chrXIII 789294 789865 HC_gene_7169_tx_130 16 - 789294 789865 . 1 572 0 -chrXIII 789295 789625 HC_gene_7169_tx_36 2 - 789295 789625 . 1 331 0 -chrXIII 789295 789865 HC_gene_7169_tx_131 14 - 789295 789865 . 1 571 0 -chrXIII 789421 790124 MC_gene_6809_tx_1 1 + 789421 790124 . 1 704 0 -chrXIII 790058 790544 HC_gene_7170_tx_1 18 - 790058 790544 . 1 487 0 -chrXIII 790058 791151 HC_gene_7170_tx_2 9 - 790058 791151 . 1 1094 0 -chrXIII 790058 793113 HC_gene_7170_tx_3 1 - 790058 793113 . 1 3056 0 -chrXIII 790058 793540 HC_gene_7170_tx_4 8 - 790058 793540 . 1 3483 0 -chrXIII 790058 793540 HC_gene_7170_tx_5 1 - 790058 793540 . 2 1408,1969 0,1514 -chrXIII 793682 794915 HC_gene_6810_tx_1 1 + 793682 794915 . 1 1234 0 -chrXIII 793698 794915 HC_gene_6810_tx_2 1 + 793698 794915 . 1 1218 0 -chrXIII 793715 794823 HC_gene_6810_tx_3 17 + 793715 794823 . 1 1109 0 -chrXIII 793715 794915 HC_gene_6810_tx_4 10 + 793715 794915 . 1 1201 0 -chrXIII 793726 794915 HC_gene_6810_tx_5 1 + 793726 794915 . 1 1190 0 -chrXIII 793762 794915 HC_gene_6810_tx_6 1 + 793762 794915 . 1 1154 0 -chrXIII 793955 794823 HC_gene_6810_tx_7 1 + 793955 794823 . 1 869 0 -chrXIII 793955 794915 HC_gene_6810_tx_8 1 + 793955 794915 . 1 961 0 -chrXIII 794073 794823 HC_gene_6810_tx_9 2 + 794073 794823 . 1 751 0 -chrXIII 794073 794915 HC_gene_6810_tx_10 3 + 794073 794915 . 1 843 0 -chrXIII 794124 794915 HC_gene_6810_tx_11 1 + 794124 794915 . 1 792 0 -chrXIII 794892 795589 HC_gene_6811_tx_1 87 + 794892 795589 . 1 698 0 -chrXIII 794892 795691 HC_gene_6811_tx_2 27 + 794892 795691 . 1 800 0 -chrXIII 795095 795589 HC_gene_6811_tx_3 14 + 795095 795589 . 1 495 0 -chrXIII 795095 795691 HC_gene_6811_tx_4 5 + 795095 795691 . 1 597 0 -chrXIII 795415 797914 HC_gene_7171_tx_1 1 - 795415 797914 . 1 2500 0 -chrXIII 795755 796552 HC_gene_6812_tx_1 133 + 795755 796552 . 1 798 0 -chrXIII 795755 796627 HC_gene_6812_tx_2 4 + 795755 796627 . 1 873 0 -chrXIII 795755 796702 HC_gene_6812_tx_3 4 + 795755 796702 . 1 948 0 -chrXIII 795934 796552 HC_gene_6812_tx_4 31 + 795934 796552 . 1 619 0 -chrXIII 796183 796552 HC_gene_6812_tx_5 29 + 796183 796552 . 1 370 0 -chrXIII 796404 797035 HC_gene_7171_tx_2 1 - 796404 797035 . 1 632 0 -chrXIII 796404 797914 HC_gene_7171_tx_4 1 - 796404 797914 . 2 620,290 0,1221 -chrXIII 796404 797914 HC_gene_7171_tx_5 3 - 796404 797914 . 1 1511 0 -chrXIII 796458 797035 HC_gene_7171_tx_3 2 - 796458 797035 . 1 578 0 -chrXIII 796458 797340 HC_gene_7171_tx_7 1 - 796458 797340 . 1 883 0 -chrXIII 796458 797914 HC_gene_7171_tx_6 4 - 796458 797914 . 1 1457 0 -chrXIII 797742 798456 MC_gene_6813_tx_1 1 + 797742 798456 . 1 715 0 -chrXIII 797965 798352 MC_gene_7172_tx_1 1 - 797965 798352 . 1 388 0 -chrXIII 798506 801587 HC_gene_6814_tx_1 10 + 798506 801587 . 1 3082 0 -chrXIII 798735 801587 HC_gene_6814_tx_2 2 + 798735 801587 . 1 2853 0 -chrXIII 799005 801587 HC_gene_6814_tx_3 1 + 799005 801587 . 2 768,755 0,1828 -chrXIII 799005 801587 HC_gene_6814_tx_4 2 + 799005 801587 . 1 2583 0 -chrXIII 799172 801587 HC_gene_6814_tx_5 3 + 799172 801587 . 1 2416 0 -chrXIII 799232 801587 HC_gene_6814_tx_6 2 + 799232 801587 . 1 2356 0 -chrXIII 799448 801587 HC_gene_6814_tx_7 5 + 799448 801587 . 1 2140 0 -chrXIII 799898 801587 HC_gene_6814_tx_8 6 + 799898 801587 . 1 1690 0 -chrXIII 800258 801587 HC_gene_6814_tx_9 6 + 800258 801587 . 1 1330 0 -chrXIII 800420 801587 HC_gene_6814_tx_10 2 + 800420 801587 . 1 1168 0 -chrXIII 800603 801587 HC_gene_6814_tx_11 2 + 800603 801587 . 1 985 0 -chrXIII 800964 801587 HC_gene_6814_tx_12 10 + 800964 801587 . 1 624 0 -chrXIII 801101 801587 HC_gene_6814_tx_13 13 + 801101 801587 . 1 487 0 -chrXIII 801475 801929 MC_gene_7173_tx_1 1 - 801475 801929 . 1 455 0 -chrXIII 801659 802861 HC_gene_6815_tx_1 59 + 801659 802861 . 1 1203 0 -chrXIII 801941 802861 HC_gene_6815_tx_2 3 + 801941 802861 . 1 921 0 -chrXIII 802726 804265 HC_gene_7174_tx_1 10 - 802726 804265 . 1 1540 0 -chrXIII 802726 804265 HC_gene_7174_tx_2 1 - 802726 804265 . 2 875,565 0,975 -chrXIII 802726 804265 HC_gene_7174_tx_3 1 - 802726 804265 . 2 1189,279 0,1261 -chrXIII 804425 805148 HC_gene_6816_tx_1 87 + 804425 805148 . 1 724 0 -chrXIII 804425 805148 HC_gene_6816_tx_2 1 + 804425 805148 . 2 350,314 0,410 -chrXIII 804425 805148 HC_gene_6816_tx_3 1 + 804425 805148 . 2 112,521 0,203 -chrXIII 804425 805148 HC_gene_6816_tx_4 1 + 804425 805148 . 2 204,373 0,351 -chrXIII 804425 805221 HC_gene_6816_tx_5 16 + 804425 805221 . 1 797 0 -chrXIII 804608 805148 HC_gene_6816_tx_6 10 + 804608 805148 . 1 541 0 -chrXIII 804608 805148 HC_gene_6816_tx_7 1 + 804608 805148 . 2 37,199 0,342 -chrXIII 804608 805221 HC_gene_6816_tx_8 2 + 804608 805221 . 1 614 0 -chrXIII 804751 805148 HC_gene_6816_tx_9 23 + 804751 805148 . 1 398 0 -chrXIII 804751 805221 HC_gene_6816_tx_10 2 + 804751 805221 . 1 471 0 -chrXIII 805218 806429 HC_gene_7175_tx_1 5 - 805218 806429 . 1 1212 0 -chrXIII 805218 806565 HC_gene_7175_tx_2 15 - 805218 806565 . 1 1348 0 -chrXIII 805218 806565 HC_gene_7175_tx_3 1 - 805218 806565 . 2 709,471 0,877 -chrXIII 806731 807204 HC_gene_7176_tx_1 4 - 806731 807204 . 1 474 0 -chrXIII 806731 807590 HC_gene_7176_tx_2 10 - 806731 807590 . 1 860 0 -chrXIII 806731 808113 HC_gene_7176_tx_3 2 - 806731 808113 . 1 1383 0 -chrXIII 807536 808113 HC_gene_7176_tx_4 1 - 807536 808113 . 1 578 0 -chrXIII 807707 808131 MC_gene_6817_tx_1 1 + 807707 808131 . 1 425 0 -chrXIII 807771 808113 HC_gene_7176_tx_5 45 - 807771 808113 . 1 343 0 -chrXIII 807897 808113 HC_gene_7176_tx_6 5 - 807897 808113 . 1 217 0 -chrXIII 808483 808918 HC_gene_7177_tx_1 33 - 808483 808918 . 1 436 0 -chrXIII 809121 809604 HC_gene_6818_tx_1 12 + 809121 809604 . 1 484 0 -chrXIII 809454 810182 HC_gene_7178_tx_1 31 - 809454 810182 . 1 729 0 -chrXIII 809454 810390 HC_gene_7178_tx_2 20 - 809454 810390 . 1 937 0 -chrXIII 809454 810658 HC_gene_7178_tx_3 27 - 809454 810658 . 1 1205 0 -chrXIII 809454 810817 HC_gene_7178_tx_4 229 - 809454 810817 . 1 1364 0 -chrXIII 809454 810889 HC_gene_7178_tx_5 4 - 809454 810889 . 1 1436 0 -chrXIII 811155 811406 HC_gene_7179_tx_1 3 - 811155 811406 . 1 252 0 -chrXIII 811155 812642 HC_gene_7179_tx_2 4 - 811155 812642 . 1 1488 0 -chrXIII 811155 813648 HC_gene_7179_tx_3 2 - 811155 813648 . 1 2494 0 -chrXIII 811155 814169 HC_gene_7179_tx_4 1 - 811155 814169 . 1 3015 0 -chrXIII 811159 812915 MC_gene_6819_tx_1 1 + 811159 812915 . 1 1757 0 -chrXIII 814300 815359 HC_gene_7180_tx_1 24 - 814300 815359 . 1 1060 0 -chrXIII 815259 815643 MC_gene_6820_tx_1 1 + 815259 815643 . 1 385 0 -chrXIII 815557 818633 HC_gene_7181_tx_1 3 - 815557 818633 . 1 3077 0 -chrXIII 815557 818633 HC_gene_7181_tx_2 1 - 815557 818633 . 2 1318,1688 0,1389 -chrXIII 818807 820055 HC_gene_6821_tx_1 174 + 818807 820055 . 1 1249 0 -chrXIII 818807 820055 HC_gene_6821_tx_2 1 + 818807 820055 . 2 117,1055 0,194 -chrXIII 818807 820055 HC_gene_6821_tx_3 1 + 818807 820055 . 2 552,183 0,1066 -chrXIII 818807 820055 HC_gene_6821_tx_4 1 + 818807 820055 . 3 436,413,77 0,683,1172 -chrXIII 818807 820055 HC_gene_6821_tx_5 1 + 818807 820055 . 2 331,835 0,414 -chrXIII 818943 820055 HC_gene_6821_tx_6 33 + 818943 820055 . 1 1113 0 -chrXIII 819519 820055 HC_gene_6821_tx_7 48 + 819519 820055 . 1 537 0 -chrXIII 819640 820055 HC_gene_6821_tx_8 7 + 819640 820055 . 1 416 0 -chrXIII 819707 820055 HC_gene_6821_tx_9 38 + 819707 820055 . 1 349 0 -chrXIII 819859 820493 LC_gene_7182_tx_1 1 - 819859 820493 . 1 635 0 -chrXIII 820136 822576 HC_gene_6822_tx_1 20 + 820136 822576 . 1 2441 0 -chrXIII 821357 822576 HC_gene_6822_tx_2 2 + 821357 822576 . 1 1220 0 -chrXIII 821626 822675 LC_gene_7183_tx_1 1 - 821626 822675 . 1 1050 0 -chrXIII 822722 824741 HC_gene_6823_tx_1 11 + 822722 824741 . 1 2020 0 -chrXIII 822722 826663 HC_gene_6823_tx_2 1 + 822722 826663 . 1 3942 0 -chrXIII 822722 827003 HC_gene_6823_tx_3 1 + 822722 827003 . 1 4282 0 -chrXIII 824293 824741 HC_gene_6823_tx_4 1 + 824293 824741 . 1 449 0 -chrXIII 824293 826663 HC_gene_6823_tx_5 1 + 824293 826663 . 1 2371 0 -chrXIII 826983 827461 HC_gene_7184_tx_1 1 - 826983 827461 . 1 479 0 -chrXIII 826983 831437 HC_gene_7184_tx_2 2 - 826983 831437 . 1 4455 0 -chrXIII 830074 830918 MC_gene_6824_tx_1 1 + 830074 830918 . 1 845 0 -chrXIII 832279 833347 HC_gene_6825_tx_1 35 + 832279 833347 . 1 1069 0 -chrXIII 832279 833513 HC_gene_6825_tx_2 1 + 832279 833513 . 1 1235 0 -chrXIII 832348 832956 HC_gene_7185_tx_1 3 - 832348 832956 . 1 609 0 -chrXIII 832412 833347 HC_gene_6825_tx_3 1 + 832412 833347 . 1 936 0 -chrXIII 832629 833347 HC_gene_6825_tx_4 7 + 832629 833347 . 1 719 0 -chrXIII 832737 833347 HC_gene_6825_tx_5 5 + 832737 833347 . 1 611 0 -chrXIII 832899 833347 HC_gene_6825_tx_6 7 + 832899 833347 . 1 449 0 -chrXIII 833271 833768 HC_gene_7186_tx_1 9 - 833271 833768 . 1 498 0 -chrXIII 833271 835146 HC_gene_7186_tx_2 17 - 833271 835146 . 1 1876 0 -chrXIII 833271 835146 HC_gene_7186_tx_3 1 - 833271 835146 . 2 62,1012 0,864 -chrXIII 833271 835146 HC_gene_7186_tx_4 1 - 833271 835146 . 2 643,1061 0,815 -chrXIII 833271 835146 HC_gene_7186_tx_5 1 - 833271 835146 . 2 814,1004 0,872 -chrXIII 833520 835215 LC_gene_6826_tx_1 1 + 833520 835215 . 1 1696 0 -chrXIII 834521 835146 HC_gene_7186_tx_6 1 - 834521 835146 . 1 626 0 -chrXIII 834524 835146 HC_gene_7186_tx_7 1 - 834524 835146 . 1 623 0 -chrXIII 835250 836851 HC_gene_7187_tx_1 7 - 835250 836851 . 1 1602 0 -chrXIII 835250 836851 HC_gene_7187_tx_2 1 - 835250 836851 . 2 233,1329 0,273 -chrXIII 836978 837816 MC_gene_6827_tx_1 1 + 836978 837816 . 1 839 0 -chrXIII 837163 837823 MC_gene_6828_tx_1 1 + 837163 837823 . 1 661 0 -chrXIII 838142 839923 HC_gene_6829_tx_1 1 + 838142 839923 . 1 1782 0 -chrXIII 838142 840096 HC_gene_6829_tx_2 11 + 838142 840096 . 1 1955 0 -chrXIII 838549 839923 HC_gene_6829_tx_3 1 + 838549 839923 . 1 1375 0 -chrXIII 838549 840096 HC_gene_6829_tx_4 6 + 838549 840096 . 1 1548 0 -chrXIII 838725 840096 HC_gene_6829_tx_5 2 + 838725 840096 . 1 1372 0 -chrXIII 839966 841509 HC_gene_7188_tx_1 3 - 839966 841509 . 1 1544 0 -chrXIII 839966 841699 HC_gene_7188_tx_2 18 - 839966 841699 . 1 1734 0 -chrXIII 839966 841699 HC_gene_7188_tx_3 1 - 839966 841699 . 2 764,894 0,840 -chrXIII 840252 841699 HC_gene_7188_tx_4 2 - 840252 841699 . 1 1448 0 -chrXIII 841924 842355 HC_gene_6830_tx_1 192 + 841924 842355 . 1 432 0 -chrXIII 842326 845382 HC_gene_7189_tx_1 7 - 842326 845382 . 1 3057 0 -chrXIII 844330 845382 HC_gene_7189_tx_2 4 - 844330 845382 . 1 1053 0 -chrXIII 845558 847120 HC_gene_6831_tx_1 1 + 845558 847120 . 1 1563 0 -chrXIII 845558 848545 HC_gene_6831_tx_2 7 + 845558 848545 . 1 2988 0 -chrXIII 847036 847882 MC_gene_7190_tx_1 1 - 847036 847882 . 1 847 0 -chrXIII 848401 849732 LC_gene_7191_tx_1 1 - 848401 849732 . 1 1332 0 -chrXIII 848661 849867 HC_gene_6832_tx_1 1 + 848661 849867 . 1 1207 0 -chrXIII 848661 849874 HC_gene_6832_tx_2 2 + 848661 849874 . 1 1214 0 -chrXIII 848661 849877 HC_gene_6832_tx_3 1 + 848661 849877 . 1 1217 0 -chrXIII 848661 849882 HC_gene_6832_tx_4 1 + 848661 849882 . 1 1222 0 -chrXIII 848661 849885 HC_gene_6832_tx_5 1 + 848661 849885 . 1 1225 0 -chrXIII 848661 849890 HC_gene_6832_tx_6 1 + 848661 849890 . 1 1230 0 -chrXIII 848661 849900 HC_gene_6832_tx_7 1 + 848661 849900 . 1 1240 0 -chrXIII 848661 849905 HC_gene_6832_tx_8 2 + 848661 849905 . 1 1245 0 -chrXIII 848661 849906 HC_gene_6832_tx_9 2 + 848661 849906 . 1 1246 0 -chrXIII 848661 849907 HC_gene_6832_tx_10 1 + 848661 849907 . 1 1247 0 -chrXIII 848661 849914 HC_gene_6832_tx_11 1 + 848661 849914 . 1 1254 0 -chrXIII 848661 849923 HC_gene_6832_tx_12 1 + 848661 849923 . 1 1263 0 -chrXIII 848661 849924 HC_gene_6832_tx_13 2 + 848661 849924 . 1 1264 0 -chrXIII 848661 849930 HC_gene_6832_tx_14 1 + 848661 849930 . 1 1270 0 -chrXIII 848661 849938 HC_gene_6832_tx_15 1 + 848661 849938 . 2 991,219 0,1059 -chrXIII 848661 849941 HC_gene_6832_tx_16 1 + 848661 849941 . 1 1281 0 -chrXIII 848661 849942 HC_gene_6832_tx_17 2 + 848661 849942 . 1 1282 0 -chrXIII 848661 849945 HC_gene_6832_tx_18 4 + 848661 849945 . 1 1285 0 -chrXIII 848661 849948 HC_gene_6832_tx_19 1 + 848661 849948 . 1 1288 0 -chrXIII 848661 849949 HC_gene_6832_tx_20 9 + 848661 849949 . 1 1289 0 -chrXIII 848661 849954 HC_gene_6832_tx_21 1 + 848661 849954 . 1 1294 0 -chrXIII 848661 849955 HC_gene_6832_tx_22 2 + 848661 849955 . 1 1295 0 -chrXIII 848661 849956 HC_gene_6832_tx_23 2 + 848661 849956 . 1 1296 0 -chrXIII 848661 849969 HC_gene_6832_tx_24 1 + 848661 849969 . 1 1309 0 -chrXIII 848661 850073 HC_gene_6832_tx_25 2 + 848661 850073 . 1 1413 0 -chrXIII 848661 850074 HC_gene_6832_tx_26 1 + 848661 850074 . 1 1414 0 -chrXIII 848661 850075 HC_gene_6832_tx_27 1 + 848661 850075 . 1 1415 0 -chrXIII 848661 850313 HC_gene_6832_tx_28 12 + 848661 850313 . 1 1653 0 -chrXIII 849918 850430 HC_gene_7192_tx_1 35 - 849918 850430 . 1 513 0 -chrXIII 849918 850537 HC_gene_7192_tx_2 24 - 849918 850537 . 1 620 0 -chrXIII 849918 850883 HC_gene_7192_tx_3 23 - 849918 850883 . 1 966 0 -chrXIII 849918 851018 HC_gene_7192_tx_4 19 - 849918 851018 . 1 1101 0 -chrXIII 849918 851219 HC_gene_7192_tx_5 16 - 849918 851219 . 1 1302 0 -chrXIII 849918 851357 HC_gene_7192_tx_6 10 - 849918 851357 . 1 1440 0 -chrXIII 849918 851487 HC_gene_7192_tx_7 12 - 849918 851487 . 1 1570 0 -chrXIII 849918 851487 HC_gene_7192_tx_8 1 - 849918 851487 . 2 263,1254 0,316 -chrXIII 849918 851487 HC_gene_7192_tx_9 1 - 849918 851487 . 2 774,696 0,874 -chrXIII 849918 851614 HC_gene_7192_tx_10 88 - 849918 851614 . 1 1697 0 -chrXIII 849918 851614 HC_gene_7192_tx_11 1 - 849918 851614 . 2 768,867 0,830 -chrXIII 849918 851614 HC_gene_7192_tx_12 1 - 849918 851614 . 2 790,856 0,841 -chrXIII 849918 851614 HC_gene_7192_tx_13 1 - 849918 851614 . 2 1208,318 0,1379 -chrXIII 849918 851614 HC_gene_7192_tx_14 1 - 849918 851614 . 2 682,971 0,726 -chrXIII 849918 851614 HC_gene_7192_tx_15 1 - 849918 851614 . 2 630,513 0,1184 -chrXIII 849918 851614 HC_gene_7192_tx_16 1 - 849918 851614 . 2 759,589 0,1108 -chrXIII 849918 851614 HC_gene_7192_tx_17 1 - 849918 851614 . 2 795,840 0,857 -chrXIII 849918 851614 HC_gene_7192_tx_18 1 - 849918 851614 . 2 698,867 0,830 -chrXIII 849918 851614 HC_gene_7192_tx_19 1 - 849918 851614 . 2 804,827 0,870 -chrXIII 849918 851622 HC_gene_7192_tx_20 1 - 849918 851622 . 2 563,277 0,1428 -chrXIII 851863 852253 HC_gene_7193_tx_1 1 - 851863 852253 . 1 391 0 -chrXIII 851863 852256 HC_gene_7193_tx_2 1 - 851863 852256 . 1 394 0 -chrXIII 851915 852520 LC_gene_6833_tx_1 1 + 851915 852520 . 1 606 0 -chrXIII 852430 852788 MC_gene_7194_tx_1 1 - 852430 852788 . 1 359 0 -chrXIII 852551 854593 HC_gene_6834_tx_1 19 + 852551 854593 . 1 2043 0 -chrXIII 852766 854593 HC_gene_6834_tx_2 1 + 852766 854593 . 1 1828 0 -chrXIII 852883 854593 HC_gene_6834_tx_3 1 + 852883 854593 . 1 1711 0 -chrXIII 852883 854593 HC_gene_6834_tx_4 1 + 852883 854593 . 2 550,1075 0,636 -chrXIII 852964 854472 HC_gene_6834_tx_5 1 + 852964 854472 . 2 354,787 0,722 -chrXIII 852964 854593 HC_gene_6834_tx_6 4 + 852964 854593 . 1 1630 0 -chrXIII 853046 854593 HC_gene_6834_tx_7 2 + 853046 854593 . 1 1548 0 -chrXIII 853117 854593 HC_gene_6834_tx_8 2 + 853117 854593 . 1 1477 0 -chrXIII 853459 854472 HC_gene_6834_tx_9 1 + 853459 854472 . 1 1014 0 -chrXIII 853459 854593 HC_gene_6834_tx_10 7 + 853459 854593 . 1 1135 0 -chrXIII 853639 854472 HC_gene_6834_tx_11 3 + 853639 854472 . 1 834 0 -chrXIII 853639 854593 HC_gene_6834_tx_12 7 + 853639 854593 . 1 955 0 -chrXIII 853887 854472 HC_gene_6834_tx_13 6 + 853887 854472 . 1 586 0 -chrXIII 853887 854593 HC_gene_6834_tx_14 13 + 853887 854593 . 1 707 0 -chrXIII 854031 854472 HC_gene_6834_tx_15 8 + 854031 854472 . 1 442 0 -chrXIII 854031 854593 HC_gene_6834_tx_16 9 + 854031 854593 . 1 563 0 -chrXIII 854124 854472 HC_gene_6834_tx_18 2 + 854124 854472 . 1 349 0 -chrXIII 854124 854593 HC_gene_6834_tx_17 17 + 854124 854593 . 1 470 0 -chrXIII 854461 854975 MC_gene_7195_tx_1 1 - 854461 854975 . 1 515 0 -chrXIII 854764 855397 HC_gene_6835_tx_1 267 + 854764 855397 . 1 634 0 -chrXIII 854764 855397 HC_gene_6835_tx_2 40 + 854764 855397 . 2 53,499 0,135 -chrXIII 855311 856832 HC_gene_7196_tx_1 11 - 855311 856832 . 1 1522 0 -chrXIII 856964 857838 HC_gene_6836_tx_1 4 + 856964 857838 . 1 875 0 -chrXIII 856964 858146 HC_gene_6836_tx_2 11 + 856964 858146 . 1 1183 0 -chrXIII 856964 858292 HC_gene_6836_tx_3 1 + 856964 858292 . 1 1329 0 -chrXIII 857163 858146 HC_gene_6836_tx_4 1 + 857163 858146 . 1 984 0 -chrXIII 858085 858594 HC_gene_7197_tx_1 90 - 858085 858594 . 1 510 0 -chrXIII 858085 858658 HC_gene_7197_tx_2 31 - 858085 858658 . 1 574 0 -chrXIII 858085 858780 HC_gene_7197_tx_3 10 - 858085 858780 . 1 696 0 -chrXIII 858085 858946 HC_gene_7197_tx_4 303 - 858085 858946 . 1 862 0 -chrXIII 859128 859431 HC_gene_7198_tx_1 36 - 859128 859431 . 1 304 0 -chrXIII 859128 860706 HC_gene_7198_tx_2 8 - 859128 860706 . 1 1579 0 -chrXIII 859128 860776 HC_gene_7198_tx_3 7 - 859128 860776 . 1 1649 0 -chrXIII 859128 861005 HC_gene_7198_tx_4 93 - 859128 861005 . 1 1878 0 -chrXIII 859128 861005 HC_gene_7198_tx_5 1 - 859128 861005 . 2 1184,426 0,1452 -chrXIII 859128 861005 HC_gene_7198_tx_6 1 - 859128 861005 . 2 278,1538 0,340 -chrXIII 859128 861005 HC_gene_7198_tx_7 1 - 859128 861005 . 2 187,1619 0,259 -chrXIII 859241 861291 MC_gene_6837_tx_1 1 + 859241 861291 . 2 523,1433 0,618 -chrXIII 861296 861704 MC_gene_7199_tx_1 1 - 861296 861704 . 1 409 0 -chrXIII 861361 861649 MC_gene_7199_tx_2 1 - 861361 861649 . 1 289 0 -chrXIII 861443 861812 MC_gene_6838_tx_1 1 + 861443 861812 . 1 370 0 -chrXIII 861849 863628 HC_gene_6839_tx_1 238 + 861849 863628 . 1 1780 0 -chrXIII 861849 863628 HC_gene_6839_tx_2 1 + 861849 863628 . 2 472,1261 0,519 -chrXIII 861849 863628 HC_gene_6839_tx_3 1 + 861849 863628 . 2 345,1199 0,581 -chrXIII 861849 863628 HC_gene_6839_tx_4 1 + 861849 863628 . 2 863,834 0,946 -chrXIII 861849 863628 HC_gene_6839_tx_5 1 + 861849 863628 . 2 1028,696 0,1084 -chrXIII 862035 863628 HC_gene_6839_tx_6 23 + 862035 863628 . 1 1594 0 -chrXIII 862035 863628 HC_gene_6839_tx_7 1 + 862035 863628 . 2 341,1090 0,504 -chrXIII 862204 863628 HC_gene_6839_tx_8 9 + 862204 863628 . 1 1425 0 -chrXIII 862204 863628 HC_gene_6839_tx_9 1 + 862204 863628 . 2 1214,138 0,1287 -chrXIII 862280 863628 HC_gene_6839_tx_10 35 + 862280 863628 . 1 1349 0 -chrXIII 862419 863628 HC_gene_6839_tx_11 34 + 862419 863628 . 1 1210 0 -chrXIII 862664 863628 HC_gene_6839_tx_12 29 + 862664 863628 . 1 965 0 -chrXIII 862778 863628 HC_gene_6839_tx_13 10 + 862778 863628 . 1 851 0 -chrXIII 862835 863628 HC_gene_6839_tx_14 70 + 862835 863628 . 1 794 0 -chrXIII 862941 863458 LC_gene_7200_tx_1 1 - 862941 863458 . 1 518 0 -chrXIII 863047 863628 HC_gene_6839_tx_15 23 + 863047 863628 . 1 582 0 -chrXIII 863127 863628 HC_gene_6839_tx_16 48 + 863127 863628 . 1 502 0 -chrXIII 863191 863628 HC_gene_6839_tx_17 29 + 863191 863628 . 1 438 0 -chrXIII 863796 864406 HC_gene_6840_tx_1 232 + 863796 864406 . 1 611 0 -chrXIII 863926 864406 HC_gene_6840_tx_2 25 + 863926 864406 . 1 481 0 -chrXIII 864034 864406 HC_gene_6840_tx_3 29 + 864034 864406 . 1 373 0 -chrXIII 864299 865402 HC_gene_7201_tx_1 23 - 864299 865402 . 1 1104 0 -chrXIII 864656 864928 LC_gene_6841_tx_1 1 + 864656 864928 . 1 273 0 -chrXIII 865494 865903 HC_gene_7202_tx_1 36 - 865494 865903 . 1 410 0 -chrXIII 865494 866029 HC_gene_7202_tx_2 27 - 865494 866029 . 1 536 0 -chrXIII 865494 866103 HC_gene_7202_tx_3 26 - 865494 866103 . 1 610 0 -chrXIII 865494 866398 HC_gene_7202_tx_4 21 - 865494 866398 . 1 905 0 -chrXIII 865494 866584 HC_gene_7202_tx_5 10 - 865494 866584 . 1 1091 0 -chrXIII 865494 867208 HC_gene_7202_tx_6 110 - 865494 867208 . 1 1715 0 -chrXIII 865494 867208 HC_gene_7202_tx_7 1 - 865494 867208 . 2 431,480 0,1235 -chrXIII 865494 867208 HC_gene_7202_tx_8 1 - 865494 867208 . 2 1495,133 0,1582 -chrXIII 865494 867208 HC_gene_7202_tx_9 1 - 865494 867208 . 2 617,1048 0,667 -chrXIII 865494 867208 HC_gene_7202_tx_10 1 - 865494 867208 . 2 786,835 0,880 -chrXIII 865494 867358 HC_gene_7202_tx_11 7 - 865494 867358 . 1 1865 0 -chrXIII 865494 867358 HC_gene_7202_tx_12 1 - 865494 867358 . 2 991,685 0,1180 -chrXIII 867479 869680 MC_gene_7203_tx_1 1 - 867479 869680 . 1 2202 0 -chrXIII 867610 868002 LC_gene_6842_tx_1 1 + 867610 868002 . 1 393 0 -chrXIII 869845 870113 MC_gene_6843_tx_1 1 + 869845 870113 . 1 269 0 -chrXIII 869971 870481 HC_gene_7204_tx_1 4 - 869971 870481 . 1 511 0 -chrXIII 869971 870606 HC_gene_7204_tx_2 14 - 869971 870606 . 1 636 0 -chrXIII 869971 870803 HC_gene_7204_tx_3 5 - 869971 870803 . 1 833 0 -chrXIII 869971 871050 HC_gene_7204_tx_4 7 - 869971 871050 . 1 1080 0 -chrXIII 869971 872458 HC_gene_7204_tx_5 2 - 869971 872458 . 1 2488 0 -chrXIII 869971 872663 HC_gene_7204_tx_6 9 - 869971 872663 . 1 2693 0 -chrXIII 872992 873293 HC_gene_6844_tx_1 1 + 872992 873293 . 1 302 0 -chrXIII 872992 873310 HC_gene_6844_tx_2 1 + 872992 873310 . 1 319 0 -chrXIII 872992 874372 HC_gene_6844_tx_3 67 + 872992 874372 . 1 1381 0 -chrXIII 872992 874448 HC_gene_6844_tx_4 21 + 872992 874448 . 1 1457 0 -chrXIII 873196 874393 HC_gene_7205_tx_1 3 - 873196 874393 . 1 1198 0 -chrXIII 874776 878866 HC_gene_6845_tx_1 6 + 874776 878866 . 1 4091 0 -chrXIII 874776 878866 HC_gene_6845_tx_2 1 + 874776 878866 . 2 2479,1529 0,2562 -chrXIII 874776 878866 HC_gene_6845_tx_3 1 + 874776 878866 . 2 2456,1573 0,2518 -chrXIII 874995 878866 HC_gene_6845_tx_4 1 + 874995 878866 . 1 3872 0 -chrXIII 876441 878866 HC_gene_6845_tx_5 2 + 876441 878866 . 1 2426 0 -chrXIII 876795 878866 HC_gene_6845_tx_6 2 + 876795 878866 . 1 2072 0 -chrXIII 878337 878866 HC_gene_6845_tx_7 10 + 878337 878866 . 1 530 0 -chrXIII 878762 879530 HC_gene_7206_tx_1 1 - 878762 879530 . 1 769 0 -chrXIII 878762 880147 HC_gene_7206_tx_3 1 - 878762 880147 . 1 1386 0 -chrXIII 878762 880370 HC_gene_7206_tx_4 1 - 878762 880370 . 2 497,1010 0,599 -chrXIII 878762 880370 HC_gene_7206_tx_5 14 - 878762 880370 . 1 1609 0 -chrXIII 878875 879530 HC_gene_7206_tx_2 93 - 878875 879530 . 1 656 0 -chrXIII 878875 880147 HC_gene_7206_tx_6 146 - 878875 880147 . 1 1273 0 -chrXIII 878875 880370 HC_gene_7206_tx_7 819 - 878875 880370 . 1 1496 0 -chrXIII 878875 880370 HC_gene_7206_tx_8 1 - 878875 880370 . 2 485,904 0,592 -chrXIII 878875 880370 HC_gene_7206_tx_9 1 - 878875 880370 . 2 1260,156 0,1340 -chrXIII 878875 880370 HC_gene_7206_tx_10 1 - 878875 880370 . 2 1158,196 0,1300 -chrXIII 878875 880370 HC_gene_7206_tx_11 1 - 878875 880370 . 2 615,556 0,940 -chrXIII 878875 880370 HC_gene_7206_tx_12 1 - 878875 880370 . 2 931,186 0,1310 -chrXIII 878875 880370 HC_gene_7206_tx_13 1 - 878875 880370 . 2 787,199 0,1297 -chrXIII 878875 880370 HC_gene_7206_tx_14 1 - 878875 880370 . 2 735,711 0,785 -chrXIII 878875 880370 HC_gene_7206_tx_15 1 - 878875 880370 . 2 1282,166 0,1330 -chrXIII 878875 880370 HC_gene_7206_tx_16 1 - 878875 880370 . 2 615,791 0,705 -chrXIII 878875 880370 HC_gene_7206_tx_17 1 - 878875 880370 . 2 1195,124 0,1372 -chrXIII 878875 880370 HC_gene_7206_tx_18 1 - 878875 880370 . 2 1080,124 0,1372 -chrXIII 878875 880370 HC_gene_7206_tx_19 1 - 878875 880370 . 2 1021,403 0,1093 -chrXIII 878875 880370 HC_gene_7206_tx_20 1 - 878875 880370 . 2 1215,142 0,1354 -chrXIII 878875 880370 HC_gene_7206_tx_21 1 - 878875 880370 . 2 64,1318 0,178 -chrXIII 878875 880370 HC_gene_7206_tx_22 1 - 878875 880370 . 2 1215,162 0,1334 -chrXIII 878875 880370 HC_gene_7206_tx_23 1 - 878875 880370 . 2 991,454 0,1042 -chrXIII 878875 880370 HC_gene_7206_tx_24 1 - 878875 880370 . 2 1260,186 0,1310 -chrXIII 878875 880370 HC_gene_7206_tx_25 1 - 878875 880370 . 2 1021,196 0,1300 -chrXIII 878875 880370 HC_gene_7206_tx_26 1 - 878875 880370 . 2 354,1053 0,443 -chrXIII 878875 880370 HC_gene_7206_tx_27 1 - 878875 880370 . 2 1236,199 0,1297 -chrXIII 878875 880399 HC_gene_7206_tx_28 1 - 878875 880399 . 2 1095,264 0,1261 -chrXIII 880818 882329 MC_gene_6846_tx_1 1 + 880818 882329 . 1 1512 0 -chrXIII 881670 882278 MC_gene_6846_tx_2 1 + 881670 882278 . 1 609 0 -chrXIII 881971 885531 LC_gene_7207_tx_1 1 - 881971 885531 . 1 3561 0 -chrXIII 885448 886397 HC_gene_7208_tx_1 1 - 885448 886397 . 1 950 0 -chrXIII 886916 888297 HC_gene_6847_tx_1 4 + 886916 888297 . 1 1382 0 -chrXIII 886916 888531 HC_gene_6847_tx_2 5 + 886916 888531 . 1 1616 0 -chrXIII 886916 888826 HC_gene_6847_tx_3 1007 + 886916 888826 . 1 1911 0 -chrXIII 886916 888826 HC_gene_6847_tx_4 1 + 886916 888826 . 2 121,1734 0,177 -chrXIII 886916 888826 HC_gene_6847_tx_5 1 + 886916 888826 . 2 1624,232 0,1679 -chrXIII 886916 888826 HC_gene_6847_tx_6 1 + 886916 888826 . 2 931,880 0,1031 -chrXIII 886916 888826 HC_gene_6847_tx_7 1 + 886916 888826 . 3 518,198,442 0,1135,1469 -chrXIII 886916 888826 HC_gene_6847_tx_8 1 + 886916 888826 . 2 181,1668 0,243 -chrXIII 886916 888826 HC_gene_6847_tx_9 1 + 886916 888826 . 2 853,740 0,1171 -chrXIII 886916 888826 HC_gene_6847_tx_10 1 + 886916 888826 . 2 939,469 0,1442 -chrXIII 886916 888826 HC_gene_6847_tx_11 1 + 886916 888826 . 3 65,250,915 0,681,996 -chrXIII 886916 888826 HC_gene_6847_tx_12 1 + 886916 888826 . 2 337,1173 0,738 -chrXIII 886916 888826 HC_gene_6847_tx_13 1 + 886916 888826 . 2 672,1076 0,835 -chrXIII 886916 888826 HC_gene_6847_tx_14 1 + 886916 888826 . 2 294,968 0,943 -chrXIII 886916 888826 HC_gene_6847_tx_15 1 + 886916 888826 . 2 1049,740 0,1171 -chrXIII 886916 888826 HC_gene_6847_tx_16 1 + 886916 888826 . 2 1277,570 0,1341 -chrXIII 886916 888826 HC_gene_6847_tx_17 1 + 886916 888826 . 2 811,1035 0,876 -chrXIII 886916 888826 HC_gene_6847_tx_18 1 + 886916 888826 . 2 1820,48 0,1863 -chrXIII 886916 888826 HC_gene_6847_tx_19 1 + 886916 888826 . 2 110,1645 0,266 -chrXIII 886916 888826 HC_gene_6847_tx_20 1 + 886916 888826 . 2 433,1372 0,539 -chrXIII 886916 888826 HC_gene_6847_tx_21 1 + 886916 888826 . 2 787,880 0,1031 -chrXIII 886916 888826 HC_gene_6847_tx_22 1 + 886916 888826 . 2 766,698 0,1213 -chrXIII 886916 888826 HC_gene_6847_tx_23 1 + 886916 888826 . 2 1744,82 0,1829 -chrXIII 886916 888826 HC_gene_6847_tx_24 1 + 886916 888826 . 2 339,1238 0,673 -chrXIII 886916 888826 HC_gene_6847_tx_25 1 + 886916 888826 . 2 422,1426 0,485 -chrXIII 886916 888826 HC_gene_6847_tx_26 1 + 886916 888826 . 2 1761,48 0,1863 -chrXIII 886916 888826 HC_gene_6847_tx_27 1 + 886916 888826 . 2 1117,613 0,1298 -chrXIII 886916 888826 HC_gene_6847_tx_28 1 + 886916 888826 . 2 321,1230 0,681 -chrXIII 886916 888826 HC_gene_6847_tx_29 1 + 886916 888826 . 2 221,1146 0,765 -chrXIII 886916 888826 HC_gene_6847_tx_30 1 + 886916 888826 . 2 178,1110 0,801 -chrXIII 886916 888826 HC_gene_6847_tx_31 1 + 886916 888826 . 2 1805,53 0,1858 -chrXIII 886916 888826 HC_gene_6847_tx_32 1 + 886916 888826 . 2 1222,613 0,1298 -chrXIII 886916 888826 HC_gene_6847_tx_33 1 + 886916 888826 . 2 1385,389 0,1522 -chrXIII 886916 888826 HC_gene_6847_tx_34 1 + 886916 888826 . 2 1378,269 0,1642 -chrXIII 886916 888826 HC_gene_6847_tx_35 1 + 886916 888826 . 2 1156,682 0,1229 -chrXIII 886916 888826 HC_gene_6847_tx_36 1 + 886916 888826 . 2 1414,451 0,1460 -chrXIII 886916 888826 HC_gene_6847_tx_37 1 + 886916 888826 . 2 253,1603 0,308 -chrXIII 886916 888826 HC_gene_6847_tx_38 1 + 886916 888826 . 2 1324,289 0,1622 -chrXIII 886927 888826 HC_gene_6847_tx_39 1 + 886927 888826 . 2 237,1230 0,670 -chrXIII 886936 888531 HC_gene_6847_tx_40 1 + 886936 888531 . 1 1596 0 -chrXIII 886958 888826 HC_gene_6847_tx_41 1 + 886958 888826 . 2 505,1182 0,687 -chrXIII 887145 888297 HC_gene_6847_tx_42 5 + 887145 888297 . 1 1153 0 -chrXIII 887145 888531 HC_gene_6847_tx_43 2 + 887145 888531 . 1 1387 0 -chrXIII 887145 888826 HC_gene_6847_tx_44 351 + 887145 888826 . 1 1682 0 -chrXIII 887145 888826 HC_gene_6847_tx_45 1 + 887145 888826 . 2 80,776 0,906 -chrXIII 887145 888826 HC_gene_6847_tx_46 1 + 887145 888826 . 2 274,1368 0,314 -chrXIII 887145 888826 HC_gene_6847_tx_47 1 + 887145 888826 . 2 133,1372 0,310 -chrXIII 887145 888826 HC_gene_6847_tx_48 1 + 887145 888826 . 2 274,1318 0,364 -chrXIII 887145 888826 HC_gene_6847_tx_49 1 + 887145 888826 . 2 372,1016 0,666 -chrXIII 887145 888826 HC_gene_6847_tx_50 1 + 887145 888826 . 2 1017,557 0,1125 -chrXIII 887145 888826 HC_gene_6847_tx_51 1 + 887145 888826 . 2 582,1035 0,647 -chrXIII 887187 888531 HC_gene_6847_tx_52 1 + 887187 888531 . 2 935,147 0,1198 -chrXIII 887312 888531 HC_gene_6847_tx_53 1 + 887312 888531 . 1 1220 0 -chrXIII 887459 888297 HC_gene_6847_tx_73 1 + 887459 888297 . 1 839 0 -chrXIII 887459 888531 HC_gene_6847_tx_54 1 + 887459 888531 . 1 1073 0 -chrXIII 887459 888826 HC_gene_6847_tx_55 126 + 887459 888826 . 1 1368 0 -chrXIII 887459 888826 HC_gene_6847_tx_56 1 + 887459 888826 . 2 211,1081 0,287 -chrXIII 887459 888826 HC_gene_6847_tx_57 1 + 887459 888826 . 2 790,355 0,1013 -chrXIII 887459 888826 HC_gene_6847_tx_58 1 + 887459 888826 . 2 877,442 0,926 -chrXIII 887592 888826 HC_gene_6847_tx_59 137 + 887592 888826 . 1 1235 0 -chrXIII 887592 888826 HC_gene_6847_tx_60 1 + 887592 888826 . 2 601,570 0,665 -chrXIII 887592 888826 HC_gene_6847_tx_61 1 + 887592 888826 . 2 480,654 0,581 -chrXIII 887592 888826 HC_gene_6847_tx_62 1 + 887592 888826 . 2 431,352 0,883 -chrXIII 887705 888297 HC_gene_6847_tx_74 1 + 887705 888297 . 1 593 0 -chrXIII 887705 888531 HC_gene_6847_tx_75 5 + 887705 888531 . 1 827 0 -chrXIII 887705 888826 HC_gene_6847_tx_63 160 + 887705 888826 . 1 1122 0 -chrXIII 887705 888826 HC_gene_6847_tx_64 1 + 887705 888826 . 2 616,420 0,702 -chrXIII 887849 888826 HC_gene_6847_tx_65 1 + 887849 888826 . 2 651,269 0,709 -chrXIII 887873 888826 HC_gene_6847_tx_66 275 + 887873 888826 . 1 954 0 -chrXIII 887873 888826 HC_gene_6847_tx_67 1 + 887873 888826 . 2 188,691 0,263 -chrXIII 887873 888826 HC_gene_6847_tx_68 1 + 887873 888826 . 2 142,740 0,214 -chrXIII 887873 888826 HC_gene_6847_tx_69 1 + 887873 888826 . 2 511,385 0,569 -chrXIII 887873 888826 HC_gene_6847_tx_70 1 + 887873 888826 . 2 843,48 0,906 -chrXIII 887873 888826 HC_gene_6847_tx_71 1 + 887873 888826 . 2 868,48 0,906 -chrXIII 887873 888826 HC_gene_6847_tx_72 1 + 887873 888826 . 2 335,559 0,395 -chrXIII 888105 888297 HC_gene_6847_tx_76 1 + 888105 888297 . 1 193 0 -chrXIII 888105 888531 HC_gene_6847_tx_77 1 + 888105 888531 . 1 427 0 -chrXIII 888105 888826 HC_gene_6847_tx_78 277 + 888105 888826 . 1 722 0 -chrXIII 888105 888826 HC_gene_6847_tx_79 1 + 888105 888826 . 2 567,29 0,693 -chrXIII 888215 888826 HC_gene_6847_tx_80 244 + 888215 888826 . 1 612 0 -chrXIII 888496 888826 HC_gene_6847_tx_81 677 + 888496 888826 . 1 331 0 -chrXIII 888496 888826 HC_gene_6847_tx_82 1 + 888496 888826 . 2 50,232 0,99 -chrXIII 888496 888826 HC_gene_6847_tx_83 1 + 888496 888826 . 2 181,53 0,278 -chrXIII 888767 889499 HC_gene_7209_tx_1 1 - 888767 889499 . 1 733 0 -chrXIII 888767 892170 HC_gene_7209_tx_3 1 - 888767 892170 . 1 3404 0 -chrXIII 888767 892366 HC_gene_7209_tx_4 1 - 888767 892366 . 1 3600 0 -chrXIII 888879 889499 HC_gene_7209_tx_2 15 - 888879 889499 . 1 621 0 -chrXIII 888879 891895 HC_gene_7209_tx_5 1 - 888879 891895 . 1 3017 0 -chrXIII 888879 892170 HC_gene_7209_tx_6 1 - 888879 892170 . 2 2547,580 0,2712 -chrXIII 888879 892366 HC_gene_7209_tx_7 12 - 888879 892366 . 1 3488 0 -chrXIII 888879 892366 HC_gene_7209_tx_8 1 - 888879 892366 . 2 1165,2269 0,1219 -chrXIII 888879 892366 HC_gene_7209_tx_9 1 - 888879 892366 . 2 1258,2141 0,1347 -chrXIII 892516 892777 MC_gene_6848_tx_1 1 + 892516 892777 . 1 262 0 -chrXIII 892673 893085 HC_gene_7210_tx_1 60 - 892673 893085 . 1 413 0 -chrXIII 892673 893170 HC_gene_7210_tx_2 15 - 892673 893170 . 1 498 0 -chrXIII 892673 893302 HC_gene_7210_tx_3 28 - 892673 893302 . 1 630 0 -chrXIII 892673 893658 HC_gene_7210_tx_4 35 - 892673 893658 . 1 986 0 -chrXIII 892673 893775 HC_gene_7210_tx_5 18 - 892673 893775 . 1 1103 0 -chrXIII 893867 895483 HC_gene_7211_tx_1 1 - 893867 895483 . 1 1617 0 -chrXIII 895642 896714 HC_gene_7212_tx_1 33 - 895642 896714 . 1 1073 0 -chrXIII 895642 896714 HC_gene_7212_tx_2 1 - 895642 896714 . 2 452,573 0,500 -chrXIII 895642 896714 HC_gene_7212_tx_3 1 - 895642 896714 . 2 899,110 0,963 -chrXIII 896801 897220 HC_gene_7213_tx_1 51 - 896801 897220 . 1 420 0 -chrXIII 896801 897429 HC_gene_7213_tx_2 59 - 896801 897429 . 1 629 0 -chrXIII 896801 897643 HC_gene_7213_tx_3 157 - 896801 897643 . 1 843 0 -chrXIII 898004 898275 MC_gene_7214_tx_1 1 - 898004 898275 . 1 272 0 -chrXIII 898311 899016 MC_gene_7215_tx_1 1 - 898311 899016 . 1 706 0 -chrXIII 898367 899343 HC_gene_6849_tx_1 60 + 898367 899343 . 1 977 0 -chrXIII 898367 899343 HC_gene_6849_tx_2 1 + 898367 899343 . 2 93,794 0,183 -chrXIII 898564 899343 HC_gene_6849_tx_3 7 + 898564 899343 . 1 780 0 -chrXIII 899193 901322 HC_gene_7216_tx_1 13 - 899193 901322 . 1 2130 0 -chrXIII 899193 901322 HC_gene_7216_tx_2 1 - 899193 901322 . 2 144,1912 0,218 -chrXIII 900107 901322 HC_gene_7216_tx_3 8 - 900107 901322 . 1 1216 0 -chrXIII 901666 902574 HC_gene_6850_tx_1 309 + 901666 902574 . 1 909 0 -chrXIII 901666 902727 HC_gene_6850_tx_2 8 + 901666 902727 . 1 1062 0 -chrXIII 901818 902574 HC_gene_6850_tx_3 35 + 901818 902574 . 1 757 0 -chrXIII 901934 902574 HC_gene_6850_tx_4 32 + 901934 902574 . 1 641 0 -chrXIII 901934 902727 HC_gene_6850_tx_5 2 + 901934 902727 . 1 794 0 -chrXIII 902068 902485 MC_gene_7217_tx_1 1 - 902068 902485 . 1 418 0 -chrXIII 902081 902574 HC_gene_6850_tx_8 41 + 902081 902574 . 1 494 0 -chrXIII 902081 902727 HC_gene_6850_tx_6 3 + 902081 902727 . 1 647 0 -chrXIII 902210 902574 HC_gene_6850_tx_9 39 + 902210 902574 . 1 365 0 -chrXIII 902210 902727 HC_gene_6850_tx_7 2 + 902210 902727 . 1 518 0 -chrXIII 902522 903560 MC_gene_7218_tx_1 1 - 902522 903560 . 1 1039 0 -chrXIII 902757 903948 HC_gene_6851_tx_1 157 + 902757 903948 . 1 1192 0 -chrXIII 902898 903948 HC_gene_6851_tx_2 13 + 902898 903948 . 1 1051 0 -chrXIII 903083 903948 HC_gene_6851_tx_3 15 + 903083 903948 . 1 866 0 -chrXIII 903178 903948 HC_gene_6851_tx_4 15 + 903178 903948 . 1 771 0 -chrXIII 903334 903948 HC_gene_6851_tx_5 13 + 903334 903948 . 1 615 0 -chrXIII 903532 904129 MC_gene_7219_tx_1 1 - 903532 904129 . 1 598 0 -chrXIII 903625 903948 HC_gene_6851_tx_6 22 + 903625 903948 . 1 324 0 -chrXIII 904132 904522 HC_gene_7220_tx_1 3 - 904132 904522 . 1 391 0 -chrXIII 904169 905904 HC_gene_6852_tx_1 1 + 904169 905904 . 2 864,769 0,967 -chrXIII 904760 905458 HC_gene_6852_tx_2 4 + 904760 905458 . 1 699 0 -chrXIII 904760 905904 HC_gene_6852_tx_3 21 + 904760 905904 . 1 1145 0 -chrXIII 904760 906022 HC_gene_6852_tx_4 1 + 904760 906022 . 1 1263 0 -chrXIII 904869 905904 HC_gene_6852_tx_5 2 + 904869 905904 . 1 1036 0 -chrXIII 904986 905904 HC_gene_6852_tx_6 5 + 904986 905904 . 1 919 0 -chrXIII 905123 905904 HC_gene_6852_tx_7 4 + 905123 905904 . 1 782 0 -chrXIII 905319 905904 HC_gene_6852_tx_8 2 + 905319 905904 . 1 586 0 -chrXIII 905319 906022 HC_gene_6852_tx_9 1 + 905319 906022 . 1 704 0 -chrXIII 905374 905904 HC_gene_6852_tx_10 6 + 905374 905904 . 1 531 0 -chrXIII 905609 905904 HC_gene_6852_tx_11 9 + 905609 905904 . 1 296 0 -chrXIII 906278 906869 LC_gene_6853_tx_1 1 + 906278 906869 . 1 592 0 -chrXIII 906610 908896 HC_gene_7221_tx_1 1 - 906610 908896 . 2 1385,781 0,1506 -chrXIII 906760 910804 HC_gene_7222_tx_1 1 - 906760 910804 . 3 611,361,2267 0,1377,1778 -chrXIII 907178 910804 HC_gene_7222_tx_2 1 - 907178 910804 . 1 3627 0 -chrXIII 907178 910804 HC_gene_7222_tx_3 1 - 907178 910804 . 2 768,2663 0,964 -chrXIII 910572 910968 HC_gene_6854_tx_1 3 + 910572 910968 . 1 397 0 -chrXIII 910902 911434 HC_gene_7223_tx_1 27 - 910902 911434 . 1 533 0 -chrXIII 910902 911528 HC_gene_7223_tx_2 38 - 910902 911528 . 1 627 0 -chrXIII 910902 911651 HC_gene_7223_tx_3 23 - 910902 911651 . 1 750 0 -chrXIII 910902 911762 HC_gene_7223_tx_4 37 - 910902 911762 . 1 861 0 -chrXIII 910902 911891 HC_gene_7223_tx_5 58 - 910902 911891 . 1 990 0 -chrXIII 910902 911971 HC_gene_7223_tx_6 12 - 910902 911971 . 1 1070 0 -chrXIII 910902 912261 HC_gene_7223_tx_7 205 - 910902 912261 . 1 1360 0 -chrXIII 912445 912782 HC_gene_6855_tx_1 9 + 912445 912782 . 1 338 0 -chrXIII 912445 912859 HC_gene_6855_tx_2 5 + 912445 912859 . 1 415 0 -chrXIII 912445 914797 HC_gene_6855_tx_3 2 + 912445 914797 . 1 2353 0 -chrXIII 912652 913338 HC_gene_7224_tx_1 9 - 912652 913338 . 1 687 0 -chrXIII 912652 913504 HC_gene_7224_tx_2 10 - 912652 913504 . 1 853 0 -chrXIII 912652 913625 HC_gene_7224_tx_3 6 - 912652 913625 . 1 974 0 -chrXIII 912652 913625 HC_gene_7224_tx_4 1 - 912652 913625 . 2 801,93 0,881 -chrXIII 912652 913790 HC_gene_7224_tx_5 6 - 912652 913790 . 1 1139 0 -chrXIII 912652 914152 HC_gene_7224_tx_6 1 - 912652 914152 . 1 1501 0 -chrXIII 912652 914206 HC_gene_7224_tx_7 3 - 912652 914206 . 1 1555 0 -chrXIII 912652 914672 HC_gene_7224_tx_8 41 - 912652 914672 . 1 2021 0 -chrXIII 912652 914672 HC_gene_7224_tx_9 1 - 912652 914672 . 2 922,980 0,1041 -chrXIII 914601 915056 HC_gene_7225_tx_1 2 - 914601 915056 . 1 456 0 -chrXIII 915460 915863 HC_gene_6856_tx_1 2 + 915460 915863 . 1 404 0 -chrXIII 915460 915999 HC_gene_6856_tx_3 1 + 915460 915999 . 1 540 0 -chrXIII 915491 915863 HC_gene_6856_tx_2 1 + 915491 915863 . 1 373 0 -chrXIII 915723 915863 HC_gene_6856_tx_4 1 + 915723 915863 . 1 141 0 -chrXIII 916112 917142 MC_gene_6857_tx_1 1 + 916112 917142 . 1 1031 0 -chrXIV 305 3509 LC_gene_7542_tx_1 1 - 305 3509 . 1 3205 0 -chrXIV 7402 8225 LC_gene_7543_tx_1 1 - 7402 8225 . 1 824 0 -chrXIV 9126 9560 MC_gene_7226_tx_1 1 + 9126 9560 . 1 435 0 -chrXIV 9412 9989 LC_gene_7544_tx_1 1 - 9412 9989 . 1 578 0 -chrXIV 10367 12083 MC_gene_7545_tx_1 1 - 10367 12083 . 1 1717 0 -chrXIV 12097 12969 MC_gene_7546_tx_1 1 - 12097 12969 . 1 873 0 -chrXIV 13086 14314 MC_gene_7227_tx_1 1 + 13086 14314 . 1 1229 0 -chrXIV 14825 16002 MC_gene_7228_tx_1 1 + 14825 16002 . 1 1178 0 -chrXIV 16055 16242 HC_gene_7547_tx_1 1 - 16055 16242 . 1 188 0 -chrXIV 16419 17817 MC_gene_7229_tx_1 1 + 16419 17817 . 1 1399 0 -chrXIV 17230 18026 MC_gene_7230_tx_1 1 + 17230 18026 . 1 797 0 -chrXIV 17739 18368 HC_gene_7548_tx_1 12 - 17739 18368 . 1 630 0 -chrXIV 17739 19347 HC_gene_7548_tx_2 38 - 17739 19347 . 1 1609 0 -chrXIV 17739 19347 HC_gene_7548_tx_3 1 - 17739 19347 . 2 1350,195 0,1414 -chrXIV 17739 19347 HC_gene_7548_tx_4 1 - 17739 19347 . 2 821,724 0,885 -chrXIV 17739 19347 HC_gene_7548_tx_5 1 - 17739 19347 . 2 663,737 0,872 -chrXIV 17932 18368 HC_gene_7548_tx_12 6 - 17932 18368 . 1 437 0 -chrXIV 17932 19347 HC_gene_7548_tx_6 35 - 17932 19347 . 1 1416 0 -chrXIV 17932 19347 HC_gene_7548_tx_7 1 - 17932 19347 . 2 84,1276 0,140 -chrXIV 17932 19347 HC_gene_7548_tx_8 1 - 17932 19347 . 2 293,1026 0,390 -chrXIV 17932 19347 HC_gene_7548_tx_9 1 - 17932 19347 . 2 62,1291 0,125 -chrXIV 17932 19347 HC_gene_7548_tx_10 1 - 17932 19347 . 2 304,1010 0,406 -chrXIV 17932 19347 HC_gene_7548_tx_11 1 - 17932 19347 . 2 596,737 0,679 -chrXIV 19478 22652 HC_gene_7549_tx_1 1 - 19478 22652 . 2 1247,1877 0,1298 -chrXIV 19478 22652 HC_gene_7549_tx_2 3 - 19478 22652 . 1 3175 0 -chrXIV 19478 23296 HC_gene_7549_tx_3 1 - 19478 23296 . 2 2745,808 0,3011 -chrXIV 19478 23296 HC_gene_7549_tx_4 1 - 19478 23296 . 1 3819 0 -chrXIV 24016 24882 HC_gene_7231_tx_1 3 + 24016 24882 . 1 867 0 -chrXIV 24209 24882 HC_gene_7231_tx_2 1 + 24209 24882 . 1 674 0 -chrXIV 25842 27231 HC_gene_7232_tx_1 1 + 25842 27231 . 1 1390 0 -chrXIV 25842 27245 HC_gene_7232_tx_2 1 + 25842 27245 . 1 1404 0 -chrXIV 25842 27264 HC_gene_7232_tx_3 1 + 25842 27264 . 1 1423 0 -chrXIV 25842 27278 HC_gene_7232_tx_4 1 + 25842 27278 . 1 1437 0 -chrXIV 25842 27283 HC_gene_7232_tx_5 1 + 25842 27283 . 1 1442 0 -chrXIV 25842 27284 HC_gene_7232_tx_6 1 + 25842 27284 . 1 1443 0 -chrXIV 25842 27285 HC_gene_7232_tx_7 1 + 25842 27285 . 1 1444 0 -chrXIV 25842 27288 HC_gene_7232_tx_8 3 + 25842 27288 . 1 1447 0 -chrXIV 25842 27290 HC_gene_7232_tx_9 3 + 25842 27290 . 1 1449 0 -chrXIV 25842 27292 HC_gene_7232_tx_10 3 + 25842 27292 . 1 1451 0 -chrXIV 25842 27296 HC_gene_7232_tx_11 2 + 25842 27296 . 1 1455 0 -chrXIV 26490 27227 HC_gene_7233_tx_1 1 + 26490 27227 . 1 738 0 -chrXIV 26490 27229 HC_gene_7233_tx_2 1 + 26490 27229 . 1 740 0 -chrXIV 26490 27268 HC_gene_7233_tx_3 1 + 26490 27268 . 1 779 0 -chrXIV 26490 27278 HC_gene_7233_tx_4 1 + 26490 27278 . 1 789 0 -chrXIV 26490 27285 HC_gene_7233_tx_5 1 + 26490 27285 . 1 796 0 -chrXIV 26490 27286 HC_gene_7233_tx_6 4 + 26490 27286 . 1 797 0 -chrXIV 26490 27288 HC_gene_7233_tx_7 3 + 26490 27288 . 1 799 0 -chrXIV 26490 27290 HC_gene_7233_tx_8 2 + 26490 27290 . 1 801 0 -chrXIV 26490 27292 HC_gene_7233_tx_9 2 + 26490 27292 . 1 803 0 -chrXIV 26490 27295 HC_gene_7233_tx_10 2 + 26490 27295 . 1 806 0 -chrXIV 26490 27296 HC_gene_7233_tx_11 1 + 26490 27296 . 1 807 0 -chrXIV 26490 27297 HC_gene_7233_tx_12 2 + 26490 27297 . 1 808 0 -chrXIV 26490 27311 HC_gene_7233_tx_13 1 + 26490 27311 . 1 822 0 -chrXIV 26614 27227 HC_gene_7233_tx_14 1 + 26614 27227 . 1 614 0 -chrXIV 26614 27231 HC_gene_7233_tx_15 1 + 26614 27231 . 1 618 0 -chrXIV 26614 27274 HC_gene_7233_tx_16 1 + 26614 27274 . 1 661 0 -chrXIV 26614 27278 HC_gene_7233_tx_17 1 + 26614 27278 . 2 56,557 0,108 -chrXIV 26614 27279 HC_gene_7233_tx_18 1 + 26614 27279 . 1 666 0 -chrXIV 26614 27280 HC_gene_7233_tx_19 2 + 26614 27280 . 1 667 0 -chrXIV 26614 27283 HC_gene_7233_tx_20 1 + 26614 27283 . 1 670 0 -chrXIV 26614 27286 HC_gene_7233_tx_21 1 + 26614 27286 . 1 673 0 -chrXIV 26614 27287 HC_gene_7233_tx_22 4 + 26614 27287 . 1 674 0 -chrXIV 26614 27289 HC_gene_7233_tx_23 1 + 26614 27289 . 1 676 0 -chrXIV 26614 27290 HC_gene_7233_tx_24 2 + 26614 27290 . 1 677 0 -chrXIV 26614 27292 HC_gene_7233_tx_25 3 + 26614 27292 . 1 679 0 -chrXIV 26614 27295 HC_gene_7233_tx_26 4 + 26614 27295 . 1 682 0 -chrXIV 26614 27296 HC_gene_7233_tx_27 1 + 26614 27296 . 1 683 0 -chrXIV 26614 27297 HC_gene_7233_tx_28 2 + 26614 27297 . 1 684 0 -chrXIV 26614 27306 HC_gene_7233_tx_29 1 + 26614 27306 . 1 693 0 -chrXIV 26614 27324 HC_gene_7233_tx_30 1 + 26614 27324 . 2 57,540 0,171 -chrXIV 26614 27330 HC_gene_7233_tx_31 1 + 26614 27330 . 1 717 0 -chrXIV 26614 27336 HC_gene_7233_tx_32 1 + 26614 27336 . 1 723 0 -chrXIV 26842 27219 HC_gene_7233_tx_33 1 + 26842 27219 . 1 378 0 -chrXIV 26842 27227 HC_gene_7233_tx_34 1 + 26842 27227 . 1 386 0 -chrXIV 26842 27244 HC_gene_7233_tx_35 1 + 26842 27244 . 1 403 0 -chrXIV 26842 27252 HC_gene_7233_tx_36 1 + 26842 27252 . 1 411 0 -chrXIV 26842 27254 HC_gene_7233_tx_37 1 + 26842 27254 . 1 413 0 -chrXIV 26842 27258 HC_gene_7233_tx_38 2 + 26842 27258 . 1 417 0 -chrXIV 26842 27264 HC_gene_7233_tx_39 2 + 26842 27264 . 1 423 0 -chrXIV 26842 27274 HC_gene_7233_tx_40 2 + 26842 27274 . 1 433 0 -chrXIV 26842 27275 HC_gene_7233_tx_41 4 + 26842 27275 . 1 434 0 -chrXIV 26842 27277 HC_gene_7233_tx_42 1 + 26842 27277 . 1 436 0 -chrXIV 26842 27278 HC_gene_7233_tx_43 3 + 26842 27278 . 1 437 0 -chrXIV 26842 27279 HC_gene_7233_tx_44 3 + 26842 27279 . 1 438 0 -chrXIV 26842 27280 HC_gene_7233_tx_45 6 + 26842 27280 . 1 439 0 -chrXIV 26842 27282 HC_gene_7233_tx_46 1 + 26842 27282 . 1 441 0 -chrXIV 26842 27283 HC_gene_7233_tx_47 1 + 26842 27283 . 1 442 0 -chrXIV 26842 27284 HC_gene_7233_tx_48 3 + 26842 27284 . 1 443 0 -chrXIV 26842 27285 HC_gene_7233_tx_49 3 + 26842 27285 . 1 444 0 -chrXIV 26842 27286 HC_gene_7233_tx_50 6 + 26842 27286 . 1 445 0 -chrXIV 26842 27287 HC_gene_7233_tx_51 2 + 26842 27287 . 1 446 0 -chrXIV 26842 27288 HC_gene_7233_tx_52 2 + 26842 27288 . 1 447 0 -chrXIV 26842 27290 HC_gene_7233_tx_53 13 + 26842 27290 . 1 449 0 -chrXIV 26842 27292 HC_gene_7233_tx_54 10 + 26842 27292 . 1 451 0 -chrXIV 26842 27295 HC_gene_7233_tx_55 6 + 26842 27295 . 1 454 0 -chrXIV 26842 27296 HC_gene_7233_tx_56 4 + 26842 27296 . 1 455 0 -chrXIV 26842 27297 HC_gene_7233_tx_57 6 + 26842 27297 . 1 456 0 -chrXIV 26842 27299 HC_gene_7233_tx_58 1 + 26842 27299 . 1 458 0 -chrXIV 26842 27306 HC_gene_7233_tx_59 2 + 26842 27306 . 1 465 0 -chrXIV 26842 27307 HC_gene_7233_tx_60 1 + 26842 27307 . 1 466 0 -chrXIV 26842 27361 HC_gene_7233_tx_61 1 + 26842 27361 . 1 520 0 -chrXIV 26946 27264 HC_gene_7233_tx_62 2 + 26946 27264 . 1 319 0 -chrXIV 26946 27266 HC_gene_7233_tx_63 2 + 26946 27266 . 1 321 0 -chrXIV 26946 27267 HC_gene_7233_tx_64 1 + 26946 27267 . 1 322 0 -chrXIV 26946 27271 HC_gene_7233_tx_65 1 + 26946 27271 . 1 326 0 -chrXIV 26946 27275 HC_gene_7233_tx_66 1 + 26946 27275 . 1 330 0 -chrXIV 26946 27278 HC_gene_7233_tx_67 5 + 26946 27278 . 1 333 0 -chrXIV 26946 27279 HC_gene_7233_tx_68 3 + 26946 27279 . 1 334 0 -chrXIV 26946 27280 HC_gene_7233_tx_69 1 + 26946 27280 . 1 335 0 -chrXIV 26946 27281 HC_gene_7233_tx_70 2 + 26946 27281 . 1 336 0 -chrXIV 26946 27284 HC_gene_7233_tx_71 1 + 26946 27284 . 1 339 0 -chrXIV 26946 27285 HC_gene_7233_tx_72 2 + 26946 27285 . 1 340 0 -chrXIV 26946 27286 HC_gene_7233_tx_73 5 + 26946 27286 . 1 341 0 -chrXIV 26946 27287 HC_gene_7233_tx_74 3 + 26946 27287 . 1 342 0 -chrXIV 26946 27288 HC_gene_7233_tx_75 2 + 26946 27288 . 1 343 0 -chrXIV 26946 27289 HC_gene_7233_tx_76 1 + 26946 27289 . 1 344 0 -chrXIV 26946 27290 HC_gene_7233_tx_77 4 + 26946 27290 . 1 345 0 -chrXIV 26946 27292 HC_gene_7233_tx_78 2 + 26946 27292 . 1 347 0 -chrXIV 26946 27294 HC_gene_7233_tx_79 1 + 26946 27294 . 1 349 0 -chrXIV 26946 27295 HC_gene_7233_tx_80 6 + 26946 27295 . 1 350 0 -chrXIV 26946 27296 HC_gene_7233_tx_81 1 + 26946 27296 . 1 351 0 -chrXIV 26946 27297 HC_gene_7233_tx_82 1 + 26946 27297 . 1 352 0 -chrXIV 26946 27309 HC_gene_7233_tx_83 1 + 26946 27309 . 1 364 0 -chrXIV 26946 27311 HC_gene_7233_tx_84 1 + 26946 27311 . 1 366 0 -chrXIV 26946 27322 HC_gene_7233_tx_85 1 + 26946 27322 . 1 377 0 -chrXIV 26946 27336 HC_gene_7233_tx_86 1 + 26946 27336 . 1 391 0 -chrXIV 27162 27841 HC_gene_7550_tx_1 3 - 27162 27841 . 1 680 0 -chrXIV 27162 28380 HC_gene_7550_tx_2 20 - 27162 28380 . 1 1219 0 -chrXIV 28011 28771 MC_gene_7234_tx_1 1 + 28011 28771 . 1 761 0 -chrXIV 28686 31409 HC_gene_7551_tx_1 4 - 28686 31409 . 1 2724 0 -chrXIV 28818 29347 LC_gene_7235_tx_1 1 + 28818 29347 . 1 530 0 -chrXIV 29822 31409 HC_gene_7551_tx_2 1 - 29822 31409 . 1 1588 0 -chrXIV 31050 31571 LC_gene_7236_tx_1 1 + 31050 31571 . 1 522 0 -chrXIV 31875 33334 HC_gene_7237_tx_1 72 + 31875 33334 . 1 1460 0 -chrXIV 31875 33334 HC_gene_7237_tx_2 1 + 31875 33334 . 2 532,666 0,794 -chrXIV 31875 33334 HC_gene_7237_tx_3 1 + 31875 33334 . 2 616,633 0,827 -chrXIV 31875 33334 HC_gene_7237_tx_4 1 + 31875 33334 . 2 706,665 0,795 -chrXIV 32545 33334 HC_gene_7237_tx_5 3 + 32545 33334 . 1 790 0 -chrXIV 32718 33526 HC_gene_7552_tx_1 1 - 32718 33526 . 1 809 0 -chrXIV 32718 33929 HC_gene_7552_tx_2 1 - 32718 33929 . 1 1212 0 -chrXIV 32718 34254 HC_gene_7552_tx_3 2 - 32718 34254 . 1 1537 0 -chrXIV 33212 33526 HC_gene_7552_tx_4 20 - 33212 33526 . 1 315 0 -chrXIV 33212 33704 HC_gene_7552_tx_5 15 - 33212 33704 . 1 493 0 -chrXIV 33212 33929 HC_gene_7552_tx_6 32 - 33212 33929 . 1 718 0 -chrXIV 33212 34115 HC_gene_7552_tx_7 14 - 33212 34115 . 1 904 0 -chrXIV 33212 34254 HC_gene_7552_tx_8 123 - 33212 34254 . 1 1043 0 -chrXIV 33212 34254 HC_gene_7552_tx_9 1 - 33212 34254 . 2 737,256 0,787 -chrXIV 33337 34502 LC_gene_7238_tx_1 1 + 33337 34502 . 1 1166 0 -chrXIV 34669 37557 HC_gene_7239_tx_1 8 + 34669 37557 . 1 2889 0 -chrXIV 34669 37557 HC_gene_7239_tx_2 1 + 34669 37557 . 2 850,1766 0,1123 -chrXIV 34876 37557 HC_gene_7239_tx_3 3 + 34876 37557 . 1 2682 0 -chrXIV 35986 37442 LC_gene_7553_tx_1 1 - 35986 37442 . 1 1457 0 -chrXIV 37642 38743 HC_gene_7240_tx_1 70 + 37642 38743 . 1 1102 0 -chrXIV 40607 42119 HC_gene_7241_tx_1 19 + 40607 42119 . 1 1513 0 -chrXIV 42014 43132 HC_gene_7554_tx_1 17 - 42014 43132 . 1 1119 0 -chrXIV 43218 44057 HC_gene_7555_tx_1 13 - 43218 44057 . 1 840 0 -chrXIV 43218 44117 HC_gene_7555_tx_2 4 - 43218 44117 . 1 900 0 -chrXIV 43218 44279 HC_gene_7555_tx_3 45 - 43218 44279 . 1 1062 0 -chrXIV 44429 45312 HC_gene_7242_tx_1 18 + 44429 45312 . 1 884 0 -chrXIV 44429 45377 HC_gene_7242_tx_2 2 + 44429 45377 . 1 949 0 -chrXIV 44791 45312 HC_gene_7242_tx_3 6 + 44791 45312 . 1 522 0 -chrXIV 44874 45312 HC_gene_7242_tx_4 4 + 44874 45312 . 1 439 0 -chrXIV 44874 45377 HC_gene_7242_tx_5 1 + 44874 45377 . 1 504 0 -chrXIV 44954 45312 HC_gene_7242_tx_6 3 + 44954 45312 . 1 359 0 -chrXIV 45219 48054 HC_gene_7556_tx_1 14 - 45219 48054 . 1 2836 0 -chrXIV 45219 48054 HC_gene_7556_tx_2 1 - 45219 48054 . 2 1298,1416 0,1420 -chrXIV 48247 49297 HC_gene_7243_tx_1 9 + 48247 49297 . 2 47,896 0,155 -chrXIV 48247 49297 HC_gene_7243_tx_2 1 + 48247 49297 . 1 1051 0 -chrXIV 48247 49415 HC_gene_7243_tx_3 1 + 48247 49415 . 1 1169 0 -chrXIV 48247 49415 HC_gene_7243_tx_4 2 + 48247 49415 . 2 47,1014 0,155 -chrXIV 48264 48938 LC_gene_7557_tx_1 1 - 48264 48938 . 1 675 0 -chrXIV 48391 49297 HC_gene_7243_tx_5 52 + 48391 49297 . 1 907 0 -chrXIV 48391 49415 HC_gene_7243_tx_6 11 + 48391 49415 . 1 1025 0 -chrXIV 48479 49297 HC_gene_7243_tx_7 17 + 48479 49297 . 1 819 0 -chrXIV 48479 49415 HC_gene_7243_tx_8 2 + 48479 49415 . 1 937 0 -chrXIV 48750 49297 HC_gene_7243_tx_9 12 + 48750 49297 . 1 548 0 -chrXIV 48750 49415 HC_gene_7243_tx_10 2 + 48750 49415 . 1 666 0 -chrXIV 49303 51694 HC_gene_7558_tx_1 1 - 49303 51694 . 2 1149,1141 0,1251 -chrXIV 49303 51694 HC_gene_7558_tx_2 2 - 49303 51694 . 1 2392 0 -chrXIV 51708 52252 HC_gene_7559_tx_1 2 - 51708 52252 . 1 545 0 -chrXIV 51708 52464 HC_gene_7559_tx_3 7 - 51708 52464 . 1 757 0 -chrXIV 51813 52252 HC_gene_7559_tx_2 2 - 51813 52252 . 1 440 0 -chrXIV 51813 52464 HC_gene_7559_tx_4 47 - 51813 52464 . 1 652 0 -chrXIV 52613 54054 HC_gene_7244_tx_1 7 + 52613 54054 . 1 1442 0 -chrXIV 52613 54115 HC_gene_7244_tx_2 2 + 52613 54115 . 1 1503 0 -chrXIV 53982 54525 HC_gene_7560_tx_1 39 - 53982 54525 . 1 544 0 -chrXIV 53982 54729 HC_gene_7560_tx_2 59 - 53982 54729 . 1 748 0 -chrXIV 53982 54886 HC_gene_7560_tx_3 32 - 53982 54886 . 1 905 0 -chrXIV 53982 54886 HC_gene_7560_tx_4 1 - 53982 54886 . 2 685,131 0,774 -chrXIV 53982 54886 HC_gene_7560_tx_5 1 - 53982 54886 . 2 361,202 0,703 -chrXIV 53982 54970 HC_gene_7560_tx_6 16 - 53982 54970 . 1 989 0 -chrXIV 53982 55084 HC_gene_7560_tx_7 16 - 53982 55084 . 1 1103 0 -chrXIV 53982 55084 HC_gene_7560_tx_8 1 - 53982 55084 . 2 925,110 0,993 -chrXIV 53982 55201 HC_gene_7560_tx_9 10 - 53982 55201 . 1 1220 0 -chrXIV 53982 55287 HC_gene_7560_tx_10 6 - 53982 55287 . 1 1306 0 -chrXIV 53982 55287 HC_gene_7560_tx_11 1 - 53982 55287 . 2 827,342 0,964 -chrXIV 53982 55287 HC_gene_7560_tx_12 1 - 53982 55287 . 2 750,479 0,827 -chrXIV 53982 55546 HC_gene_7560_tx_13 16 - 53982 55546 . 1 1565 0 -chrXIV 53982 55707 HC_gene_7560_tx_14 8 - 53982 55707 . 1 1726 0 -chrXIV 53982 55707 HC_gene_7560_tx_15 1 - 53982 55707 . 2 1460,213 0,1513 -chrXIV 53982 55939 HC_gene_7560_tx_16 67 - 53982 55939 . 1 1958 0 -chrXIV 53982 55939 HC_gene_7560_tx_17 1 - 53982 55939 . 2 1712,193 0,1765 -chrXIV 53982 55939 HC_gene_7560_tx_18 1 - 53982 55939 . 2 1852,64 0,1894 -chrXIV 53982 55939 HC_gene_7560_tx_19 1 - 53982 55939 . 2 1712,145 0,1813 -chrXIV 53982 55939 HC_gene_7560_tx_20 1 - 53982 55939 . 2 931,950 0,1008 -chrXIV 53982 55939 HC_gene_7560_tx_21 1 - 53982 55939 . 2 873,1015 0,943 -chrXIV 56105 56899 HC_gene_7561_tx_1 25 - 56105 56899 . 1 795 0 -chrXIV 56105 57123 HC_gene_7561_tx_2 15 - 56105 57123 . 1 1019 0 -chrXIV 56105 57123 HC_gene_7561_tx_3 1 - 56105 57123 . 2 590,172 0,847 -chrXIV 56105 57123 HC_gene_7561_tx_4 1 - 56105 57123 . 2 700,267 0,752 -chrXIV 56105 57336 HC_gene_7561_tx_5 33 - 56105 57336 . 1 1232 0 -chrXIV 56105 57336 HC_gene_7561_tx_6 1 - 56105 57336 . 2 610,501 0,731 -chrXIV 56105 57534 HC_gene_7561_tx_7 6 - 56105 57534 . 1 1430 0 -chrXIV 56105 57740 HC_gene_7561_tx_8 114 - 56105 57740 . 1 1636 0 -chrXIV 58125 58926 HC_gene_7245_tx_1 180 + 58125 58926 . 1 802 0 -chrXIV 58344 58926 HC_gene_7245_tx_2 23 + 58344 58926 . 1 583 0 -chrXIV 58468 58926 HC_gene_7245_tx_3 19 + 58468 58926 . 1 459 0 -chrXIV 58572 58926 HC_gene_7245_tx_4 40 + 58572 58926 . 1 355 0 -chrXIV 58809 59154 HC_gene_7562_tx_1 3 - 58809 59154 . 1 346 0 -chrXIV 58809 59823 HC_gene_7562_tx_2 91 - 58809 59823 . 1 1015 0 -chrXIV 60187 61040 LC_gene_7563_tx_1 1 - 60187 61040 . 1 854 0 -chrXIV 60269 61682 HC_gene_7246_tx_1 10 + 60269 61682 . 1 1414 0 -chrXIV 60650 61682 HC_gene_7246_tx_2 5 + 60650 61682 . 1 1033 0 -chrXIV 61775 62133 HC_gene_7564_tx_1 222 - 61775 62133 . 1 359 0 -chrXIV 61775 62242 HC_gene_7564_tx_2 166 - 61775 62242 . 1 468 0 -chrXIV 61775 62298 HC_gene_7564_tx_3 1732 - 61775 62298 . 1 524 0 -chrXIV 61775 62879 HC_gene_7564_tx_4 8 - 61775 62879 . 1 1105 0 -chrXIV 61775 62957 HC_gene_7564_tx_5 84 - 61775 62957 . 1 1183 0 -chrXIV 61775 62957 HC_gene_7564_tx_6 457 - 61775 62957 . 2 598,34 0,1149 -chrXIV 61775 62957 HC_gene_7564_tx_7 11 - 61775 62957 . 2 587,38 0,1145 -chrXIV 61775 62957 HC_gene_7564_tx_8 6 - 61775 62957 . 2 587,34 0,1149 -chrXIV 61775 63103 HC_gene_7564_tx_9 15 - 61775 63103 . 2 598,180 0,1149 -chrXIV 63404 63730 HC_gene_7565_tx_1 49 - 63404 63730 . 1 327 0 -chrXIV 63404 63980 HC_gene_7565_tx_2 30 - 63404 63980 . 1 577 0 -chrXIV 63404 64475 HC_gene_7565_tx_3 3 - 63404 64475 . 1 1072 0 -chrXIV 63404 64579 HC_gene_7565_tx_4 1 - 63404 64579 . 2 608,122 0,1054 -chrXIV 63404 64582 HC_gene_7565_tx_5 1 - 63404 64582 . 2 617,125 0,1054 -chrXIV 63404 64582 HC_gene_7565_tx_6 1 - 63404 64582 . 2 608,113 0,1066 -chrXIV 63404 64583 HC_gene_7565_tx_7 1 - 63404 64583 . 2 617,126 0,1054 -chrXIV 63404 64586 HC_gene_7565_tx_8 1 - 63404 64586 . 2 617,129 0,1054 -chrXIV 63404 64587 HC_gene_7565_tx_9 91 - 63404 64587 . 1 1184 0 -chrXIV 63404 64587 HC_gene_7565_tx_10 335 - 63404 64587 . 2 615,137 0,1047 -chrXIV 63404 64587 HC_gene_7565_tx_11 29 - 63404 64587 . 2 615,141 0,1043 -chrXIV 63404 64587 HC_gene_7565_tx_12 1 - 63404 64587 . 2 607,137 0,1047 -chrXIV 63404 64587 HC_gene_7565_tx_13 1 - 63404 64587 . 2 645,137 0,1047 -chrXIV 63404 64587 HC_gene_7565_tx_14 1 - 63404 64587 . 2 615,432 0,752 -chrXIV 63404 64587 HC_gene_7565_tx_15 1 - 63404 64587 . 2 608,219 0,965 -chrXIV 63404 64587 HC_gene_7565_tx_16 1 - 63404 64587 . 2 909,219 0,965 -chrXIV 63404 64587 HC_gene_7565_tx_17 1 - 63404 64587 . 2 608,137 0,1047 -chrXIV 63404 64588 HC_gene_7565_tx_18 1 - 63404 64588 . 2 617,131 0,1054 -chrXIV 63404 64590 HC_gene_7565_tx_19 2 - 63404 64590 . 2 617,133 0,1054 -chrXIV 63404 64591 HC_gene_7565_tx_20 1 - 63404 64591 . 2 617,134 0,1054 -chrXIV 63404 64592 HC_gene_7565_tx_21 1 - 63404 64592 . 2 617,135 0,1054 -chrXIV 63404 64593 HC_gene_7565_tx_22 3 - 63404 64593 . 2 617,136 0,1054 -chrXIV 63404 64595 HC_gene_7565_tx_23 1 - 63404 64595 . 2 617,133 0,1059 -chrXIV 63404 64597 HC_gene_7565_tx_24 1 - 63404 64597 . 2 617,140 0,1054 -chrXIV 63404 64599 HC_gene_7565_tx_25 1 - 63404 64599 . 2 617,142 0,1054 -chrXIV 63404 64600 HC_gene_7565_tx_26 2 - 63404 64600 . 2 617,143 0,1054 -chrXIV 63404 64603 HC_gene_7565_tx_27 1 - 63404 64603 . 2 617,146 0,1054 -chrXIV 63404 64604 HC_gene_7565_tx_28 1 - 63404 64604 . 2 617,147 0,1054 -chrXIV 63404 64633 HC_gene_7565_tx_29 1 - 63404 64633 . 2 617,176 0,1054 -chrXIV 64851 66247 MC_gene_7566_tx_1 1 - 64851 66247 . 1 1397 0 -chrXIV 65651 66309 HC_gene_7247_tx_1 406 + 65651 66309 . 1 659 0 -chrXIV 66433 68506 MC_gene_7248_tx_1 1 + 66433 68506 . 1 2074 0 -chrXIV 68013 68366 LC_gene_7567_tx_1 1 - 68013 68366 . 1 354 0 -chrXIV 68412 68903 MC_gene_7568_tx_1 1 - 68412 68903 . 1 492 0 -chrXIV 68723 71553 HC_gene_7249_tx_1 4 + 68723 71553 . 1 2831 0 -chrXIV 71441 75069 HC_gene_7569_tx_1 1 - 71441 75069 . 1 3629 0 -chrXIV 71441 76615 HC_gene_7569_tx_2 1 - 71441 76615 . 1 5175 0 -chrXIV 71542 76615 HC_gene_7569_tx_3 1 - 71542 76615 . 1 5074 0 -chrXIV 71598 76615 HC_gene_7569_tx_4 1 - 71598 76615 . 1 5018 0 -chrXIV 71598 76615 HC_gene_7569_tx_5 1 - 71598 76615 . 2 465,4470 0,548 -chrXIV 76796 78663 HC_gene_7250_tx_1 16 + 76796 78663 . 1 1868 0 -chrXIV 76796 78663 HC_gene_7250_tx_2 1 + 76796 78663 . 2 264,1291 0,577 -chrXIV 77936 78180 MC_gene_7570_tx_1 1 - 77936 78180 . 1 245 0 -chrXIV 78494 79137 HC_gene_7571_tx_1 9 - 78494 79137 . 1 644 0 -chrXIV 78494 79615 HC_gene_7571_tx_2 9 - 78494 79615 . 1 1122 0 -chrXIV 78494 80435 HC_gene_7571_tx_3 16 - 78494 80435 . 1 1942 0 -chrXIV 78494 80435 HC_gene_7571_tx_4 1 - 78494 80435 . 2 1512,331 0,1611 -chrXIV 78494 80435 HC_gene_7571_tx_5 1 - 78494 80435 . 2 1368,115 0,1827 -chrXIV 78494 80435 HC_gene_7571_tx_6 1 - 78494 80435 . 2 843,352 0,1590 -chrXIV 80598 82674 HC_gene_7251_tx_1 11 + 80598 82674 . 1 2077 0 -chrXIV 80761 82674 HC_gene_7251_tx_2 3 + 80761 82674 . 1 1914 0 -chrXIV 81916 82674 HC_gene_7251_tx_3 3 + 81916 82674 . 1 759 0 -chrXIV 82019 82606 LC_gene_7572_tx_1 1 - 82019 82606 . 1 588 0 -chrXIV 82796 84129 HC_gene_7252_tx_1 43 + 82796 84129 . 1 1334 0 -chrXIV 82796 84129 HC_gene_7252_tx_2 1 + 82796 84129 . 2 967,297 0,1037 -chrXIV 82796 84129 HC_gene_7252_tx_3 1 + 82796 84129 . 2 563,701 0,633 -chrXIV 83320 84129 HC_gene_7252_tx_4 1 + 83320 84129 . 1 810 0 -chrXIV 83376 84129 HC_gene_7252_tx_5 12 + 83376 84129 . 1 754 0 -chrXIV 83537 84129 HC_gene_7252_tx_6 9 + 83537 84129 . 1 593 0 -chrXIV 83599 84129 HC_gene_7252_tx_7 8 + 83599 84129 . 1 531 0 -chrXIV 84015 86030 HC_gene_7573_tx_1 10 - 84015 86030 . 1 2016 0 -chrXIV 85449 86095 MC_gene_7253_tx_1 1 + 85449 86095 . 1 647 0 -chrXIV 86192 87292 HC_gene_7254_tx_1 49 + 86192 87292 . 1 1101 0 -chrXIV 86986 87292 HC_gene_7254_tx_2 6 + 86986 87292 . 1 307 0 -chrXIV 87738 88565 LC_gene_7574_tx_1 1 - 87738 88565 . 1 828 0 -chrXIV 87815 88869 HC_gene_7255_tx_1 94 + 87815 88869 . 1 1055 0 -chrXIV 88768 89591 MC_gene_7575_tx_1 1 - 88768 89591 . 1 824 0 -chrXIV 89072 89308 HC_gene_7256_tx_1 17 + 89072 89308 . 1 237 0 -chrXIV 89072 89538 HC_gene_7256_tx_2 8 + 89072 89538 . 1 467 0 -chrXIV 89072 89627 HC_gene_7256_tx_3 1 + 89072 89627 . 1 556 0 -chrXIV 90161 91499 HC_gene_7257_tx_1 12 + 90161 91499 . 1 1339 0 -chrXIV 90161 91499 HC_gene_7257_tx_2 1 + 90161 91499 . 2 227,835 0,504 -chrXIV 90161 91572 HC_gene_7257_tx_3 39 + 90161 91572 . 1 1412 0 -chrXIV 90161 91572 HC_gene_7257_tx_4 1 + 90161 91572 . 2 323,949 0,463 -chrXIV 90161 91572 HC_gene_7257_tx_5 1 + 90161 91572 . 2 103,1079 0,333 -chrXIV 90161 91572 HC_gene_7257_tx_6 1 + 90161 91572 . 2 106,1079 0,333 -chrXIV 90161 91572 HC_gene_7257_tx_7 1 + 90161 91572 . 2 212,925 0,487 -chrXIV 90660 91536 MC_gene_7576_tx_1 1 - 90660 91536 . 1 877 0 -chrXIV 91804 95030 HC_gene_7258_tx_1 20 + 91804 95030 . 1 3227 0 -chrXIV 91804 95030 HC_gene_7258_tx_2 1 + 91804 95030 . 2 2099,1051 0,2176 -chrXIV 91891 95030 HC_gene_7258_tx_3 2 + 91891 95030 . 1 3140 0 -chrXIV 91967 95030 HC_gene_7258_tx_4 1 + 91967 95030 . 2 2958,52 0,3012 -chrXIV 92039 95030 HC_gene_7258_tx_5 4 + 92039 95030 . 1 2992 0 -chrXIV 92157 95030 HC_gene_7258_tx_6 3 + 92157 95030 . 1 2874 0 -chrXIV 93438 95030 HC_gene_7258_tx_7 9 + 93438 95030 . 1 1593 0 -chrXIV 94070 95030 HC_gene_7258_tx_8 16 + 94070 95030 . 1 961 0 -chrXIV 94606 95030 HC_gene_7258_tx_9 17 + 94606 95030 . 1 425 0 -chrXIV 94606 95030 HC_gene_7258_tx_10 1 + 94606 95030 . 2 273,77 0,348 -chrXIV 94725 95030 HC_gene_7258_tx_11 17 + 94725 95030 . 1 306 0 -chrXIV 94937 96111 HC_gene_7577_tx_1 1 - 94937 96111 . 1 1175 0 -chrXIV 95130 96168 HC_gene_7259_tx_1 22 + 95130 96168 . 1 1039 0 -chrXIV 95130 96168 HC_gene_7259_tx_2 1 + 95130 96168 . 2 564,430 0,609 -chrXIV 95309 96168 HC_gene_7259_tx_3 27 + 95309 96168 . 1 860 0 -chrXIV 95309 96168 HC_gene_7259_tx_4 1 + 95309 96168 . 2 132,612 0,248 -chrXIV 95504 96168 HC_gene_7259_tx_5 3 + 95504 96168 . 1 665 0 -chrXIV 102798 103146 MC_gene_7260_tx_1 1 + 102798 103146 . 1 349 0 -chrXIV 102897 104056 HC_gene_7578_tx_1 3 - 102897 104056 . 1 1160 0 -chrXIV 103043 103403 HC_gene_7578_tx_3 10 - 103043 103403 . 1 361 0 -chrXIV 103043 103809 HC_gene_7578_tx_4 8 - 103043 103809 . 1 767 0 -chrXIV 103043 104056 HC_gene_7578_tx_2 62 - 103043 104056 . 1 1014 0 -chrXIV 104277 105042 HC_gene_7261_tx_1 1 + 104277 105042 . 1 766 0 -chrXIV 104955 106239 HC_gene_7579_tx_1 4 - 104955 106239 . 1 1285 0 -chrXIV 104955 106374 HC_gene_7579_tx_2 2 - 104955 106374 . 1 1420 0 -chrXIV 104955 106464 HC_gene_7579_tx_3 3 - 104955 106464 . 1 1510 0 -chrXIV 104955 106709 HC_gene_7579_tx_4 1 - 104955 106709 . 2 1002,624 0,1131 -chrXIV 104955 106709 HC_gene_7579_tx_5 2 - 104955 106709 . 1 1755 0 -chrXIV 104955 106956 HC_gene_7579_tx_6 1 - 104955 106956 . 1 2002 0 -chrXIV 104955 107088 HC_gene_7579_tx_7 14 - 104955 107088 . 1 2134 0 -chrXIV 104955 107088 HC_gene_7579_tx_8 1 - 104955 107088 . 2 836,1238 0,896 -chrXIV 105027 106239 HC_gene_7579_tx_9 2 - 105027 106239 . 1 1213 0 -chrXIV 105027 106374 HC_gene_7579_tx_10 3 - 105027 106374 . 1 1348 0 -chrXIV 105027 106464 HC_gene_7579_tx_11 4 - 105027 106464 . 1 1438 0 -chrXIV 105027 106709 HC_gene_7579_tx_12 1 - 105027 106709 . 1 1683 0 -chrXIV 105027 106709 HC_gene_7579_tx_13 1 - 105027 106709 . 2 834,555 0,1128 -chrXIV 105027 106956 HC_gene_7579_tx_14 1 - 105027 106956 . 1 1930 0 -chrXIV 105027 107088 HC_gene_7579_tx_15 4 - 105027 107088 . 1 2062 0 -chrXIV 105127 106464 HC_gene_7579_tx_16 1 - 105127 106464 . 1 1338 0 -chrXIV 105127 107088 HC_gene_7579_tx_17 1 - 105127 107088 . 1 1962 0 -chrXIV 105129 106709 HC_gene_7579_tx_18 1 - 105129 106709 . 1 1581 0 -chrXIV 105129 107088 HC_gene_7579_tx_19 1 - 105129 107088 . 1 1960 0 -chrXIV 105472 107532 LC_gene_7262_tx_1 1 + 105472 107532 . 1 2061 0 -chrXIV 107662 109122 HC_gene_7263_tx_1 27 + 107662 109122 . 1 1461 0 -chrXIV 107683 108087 MC_gene_7580_tx_1 1 - 107683 108087 . 1 405 0 -chrXIV 108438 108800 HC_gene_7263_tx_2 7 + 108438 108800 . 1 363 0 -chrXIV 108438 109122 HC_gene_7263_tx_3 299 + 108438 109122 . 1 685 0 -chrXIV 108647 109122 HC_gene_7263_tx_4 11 + 108647 109122 . 1 476 0 -chrXIV 108773 110473 HC_gene_7581_tx_1 1 - 108773 110473 . 1 1701 0 -chrXIV 108813 109122 HC_gene_7263_tx_5 62 + 108813 109122 . 1 310 0 -chrXIV 108985 110473 HC_gene_7581_tx_2 34 - 108985 110473 . 1 1489 0 -chrXIV 108985 110473 HC_gene_7581_tx_3 1 - 108985 110473 . 2 561,845 0,644 -chrXIV 108985 110473 HC_gene_7581_tx_4 1 - 108985 110473 . 2 899,260 0,1229 -chrXIV 109077 110473 HC_gene_7581_tx_5 1 - 109077 110473 . 1 1397 0 -chrXIV 109948 110473 HC_gene_7581_tx_6 1 - 109948 110473 . 1 526 0 -chrXIV 110760 112716 HC_gene_7582_tx_1 2 - 110760 112716 . 1 1957 0 -chrXIV 110900 113170 LC_gene_7264_tx_1 1 + 110900 113170 . 1 2271 0 -chrXIV 112252 112716 HC_gene_7582_tx_2 1 - 112252 112716 . 1 465 0 -chrXIV 113198 116642 HC_gene_7265_tx_1 4 + 113198 116642 . 1 3445 0 -chrXIV 113198 116800 HC_gene_7265_tx_2 1 + 113198 116800 . 1 3603 0 -chrXIV 114318 116542 MC_gene_7583_tx_1 1 - 114318 116542 . 1 2225 0 -chrXIV 117060 118639 HC_gene_7584_tx_1 2 - 117060 118639 . 1 1580 0 -chrXIV 117238 118925 HC_gene_7266_tx_1 12 + 117238 118925 . 1 1688 0 -chrXIV 117238 118925 HC_gene_7266_tx_2 1 + 117238 118925 . 2 297,1074 0,614 -chrXIV 117393 118925 HC_gene_7266_tx_3 3 + 117393 118925 . 1 1533 0 -chrXIV 118676 118925 HC_gene_7266_tx_4 2 + 118676 118925 . 1 250 0 -chrXIV 118807 119122 HC_gene_7585_tx_1 1 - 118807 119122 . 1 316 0 -chrXIV 118817 119122 HC_gene_7585_tx_2 1 - 118817 119122 . 1 306 0 -chrXIV 119061 119739 HC_gene_7267_tx_1 1 + 119061 119739 . 1 679 0 -chrXIV 119061 121090 HC_gene_7267_tx_2 4 + 119061 121090 . 1 2030 0 -chrXIV 119250 119739 HC_gene_7267_tx_7 1 + 119250 119739 . 1 490 0 -chrXIV 119250 121090 HC_gene_7267_tx_3 16 + 119250 121090 . 1 1841 0 -chrXIV 119250 121090 HC_gene_7267_tx_4 1 + 119250 121090 . 2 994,801 0,1040 -chrXIV 119250 121090 HC_gene_7267_tx_5 1 + 119250 121090 . 2 556,730 0,1111 -chrXIV 119250 121180 HC_gene_7267_tx_6 1 + 119250 121180 . 1 1931 0 -chrXIV 119955 121090 HC_gene_7267_tx_8 3 + 119955 121090 . 1 1136 0 -chrXIV 121011 121390 HC_gene_7586_tx_1 9 - 121011 121390 . 1 380 0 -chrXIV 121011 121531 HC_gene_7586_tx_2 4 - 121011 121531 . 1 521 0 -chrXIV 121011 121662 HC_gene_7586_tx_3 2 - 121011 121662 . 1 652 0 -chrXIV 121011 122109 HC_gene_7586_tx_4 5 - 121011 122109 . 1 1099 0 -chrXIV 121011 122216 HC_gene_7586_tx_5 32 - 121011 122216 . 1 1206 0 -chrXIV 121011 122216 HC_gene_7586_tx_6 1 - 121011 122216 . 2 418,706 0,500 -chrXIV 122875 126669 HC_gene_7268_tx_1 2 + 122875 126669 . 1 3795 0 -chrXIV 126691 129181 HC_gene_7587_tx_1 5 - 126691 129181 . 1 2491 0 -chrXIV 126759 129181 HC_gene_7587_tx_2 14 - 126759 129181 . 1 2423 0 -chrXIV 128432 129181 HC_gene_7587_tx_3 3 - 128432 129181 . 1 750 0 -chrXIV 129344 129649 HC_gene_7588_tx_1 13 - 129344 129649 . 1 306 0 -chrXIV 129344 129748 HC_gene_7588_tx_2 11 - 129344 129748 . 1 405 0 -chrXIV 129344 129834 HC_gene_7588_tx_3 8 - 129344 129834 . 1 491 0 -chrXIV 129344 130149 HC_gene_7588_tx_4 6 - 129344 130149 . 1 806 0 -chrXIV 129344 130220 HC_gene_7588_tx_5 10 - 129344 130220 . 1 877 0 -chrXIV 129344 130300 HC_gene_7588_tx_6 9 - 129344 130300 . 1 957 0 -chrXIV 129344 131485 HC_gene_7588_tx_7 5 - 129344 131485 . 1 2142 0 -chrXIV 129344 131485 HC_gene_7588_tx_8 1 - 129344 131485 . 2 1818,204 0,1938 -chrXIV 129344 131667 HC_gene_7588_tx_9 1 - 129344 131667 . 2 2067,128 0,2196 -chrXIV 129344 131856 HC_gene_7588_tx_10 3 - 129344 131856 . 1 2513 0 -chrXIV 129344 132578 HC_gene_7588_tx_11 1 - 129344 132578 . 1 3235 0 -chrXIV 129344 132955 HC_gene_7588_tx_12 1 - 129344 132955 . 1 3612 0 -chrXIV 132961 133267 MC_gene_7589_tx_1 1 - 132961 133267 . 1 307 0 -chrXIV 133915 135493 MC_gene_7590_tx_1 1 - 133915 135493 . 1 1579 0 -chrXIV 133967 134784 MC_gene_7590_tx_2 1 - 133967 134784 . 1 818 0 -chrXIV 135846 137850 HC_gene_7591_tx_1 1 - 135846 137850 . 1 2005 0 -chrXIV 137760 140506 LC_gene_7592_tx_1 1 - 137760 140506 . 1 2747 0 -chrXIV 138187 140646 HC_gene_7269_tx_1 3 + 138187 140646 . 1 2460 0 -chrXIV 138494 139633 HC_gene_7269_tx_7 1 + 138494 139633 . 1 1140 0 -chrXIV 138494 139637 HC_gene_7269_tx_8 1 + 138494 139637 . 1 1144 0 -chrXIV 138494 140646 HC_gene_7269_tx_2 184 + 138494 140646 . 1 2153 0 -chrXIV 138494 140646 HC_gene_7269_tx_3 1 + 138494 140646 . 2 722,996 0,1157 -chrXIV 138494 140646 HC_gene_7269_tx_4 1 + 138494 140646 . 2 1096,996 0,1157 -chrXIV 138494 140646 HC_gene_7269_tx_5 1 + 138494 140646 . 2 1114,877 0,1276 -chrXIV 138494 140646 HC_gene_7269_tx_6 1 + 138494 140646 . 2 142,1492 0,661 -chrXIV 140793 144101 HC_gene_7270_tx_1 1 + 140793 144101 . 1 3309 0 -chrXIV 140793 144214 HC_gene_7270_tx_2 1 + 140793 144214 . 2 3272,84 0,3338 -chrXIV 140793 144295 HC_gene_7270_tx_3 2 + 140793 144295 . 2 3282,162 0,3341 -chrXIV 140793 144295 HC_gene_7270_tx_4 1 + 140793 144295 . 2 3282,157 0,3346 -chrXIV 140793 144295 HC_gene_7270_tx_5 1 + 140793 144295 . 2 3300,143 0,3360 -chrXIV 140793 144295 HC_gene_7270_tx_6 1 + 140793 144295 . 3 1949,1236,143 0,2064,3360 -chrXIV 143786 144101 HC_gene_7270_tx_7 2 + 143786 144101 . 1 316 0 -chrXIV 143786 144214 HC_gene_7270_tx_8 2 + 143786 144214 . 2 289,81 0,348 -chrXIV 143786 144214 HC_gene_7270_tx_9 1 + 143786 144214 . 2 305,68 0,361 -chrXIV 143786 144295 HC_gene_7270_tx_10 2 + 143786 144295 . 2 289,162 0,348 -chrXIV 143786 144295 HC_gene_7270_tx_11 6 + 143786 144295 . 2 307,143 0,367 -chrXIV 143786 144295 HC_gene_7270_tx_12 1 + 143786 144295 . 2 290,154 0,356 -chrXIV 143786 144295 HC_gene_7270_tx_13 1 + 143786 144295 . 2 289,153 0,357 -chrXIV 144037 144546 HC_gene_7593_tx_1 2 - 144037 144546 . 2 56,394 0,116 -chrXIV 144037 144546 HC_gene_7593_tx_2 1 - 144037 144546 . 2 54,380 0,130 -chrXIV 144037 144546 HC_gene_7593_tx_3 2 - 144037 144546 . 2 56,388 0,122 -chrXIV 144037 145303 HC_gene_7593_tx_5 1 - 144037 145303 . 3 56,983,47 0,116,1220 -chrXIV 144037 145303 HC_gene_7593_tx_6 1 - 144037 145303 . 2 56,1151 0,116 -chrXIV 144037 145303 HC_gene_7593_tx_7 1 - 144037 145303 . 3 38,1006,49 0,107,1218 -chrXIV 144037 145303 HC_gene_7593_tx_8 1 - 144037 145303 . 3 54,994,49 0,119,1218 -chrXIV 144037 145303 HC_gene_7593_tx_9 1 - 144037 145303 . 3 54,993,49 0,120,1218 -chrXIV 144037 145303 HC_gene_7593_tx_10 1 - 144037 145303 . 3 56,997,47 0,116,1220 -chrXIV 144037 145303 HC_gene_7593_tx_11 1 - 144037 145303 . 3 54,997,49 0,116,1218 -chrXIV 144130 144546 HC_gene_7593_tx_4 4 - 144130 144546 . 1 417 0 -chrXIV 144130 145303 HC_gene_7593_tx_12 2 - 144130 145303 . 2 1020,49 0,1125 -chrXIV 144130 145303 HC_gene_7593_tx_13 1 - 144130 145303 . 1 1174 0 -chrXIV 144221 144546 HC_gene_7593_tx_16 7 - 144221 144546 . 1 326 0 -chrXIV 144221 145303 HC_gene_7593_tx_14 8 - 144221 145303 . 1 1083 0 -chrXIV 144221 145303 HC_gene_7593_tx_15 7 - 144221 145303 . 2 929,49 0,1034 -chrXIV 145269 146624 HC_gene_7594_tx_1 4 - 145269 146624 . 1 1356 0 -chrXIV 145426 146624 HC_gene_7594_tx_2 57 - 145426 146624 . 1 1199 0 -chrXIV 145531 145826 LC_gene_7271_tx_1 1 + 145531 145826 . 1 296 0 -chrXIV 146696 147679 HC_gene_7595_tx_1 6 - 146696 147679 . 1 984 0 -chrXIV 146696 147982 HC_gene_7595_tx_3 32 - 146696 147982 . 1 1287 0 -chrXIV 146696 147982 HC_gene_7595_tx_4 1 - 146696 147982 . 2 64,1178 0,109 -chrXIV 146696 147982 HC_gene_7595_tx_5 1 - 146696 147982 . 2 786,209 0,1078 -chrXIV 146786 147679 HC_gene_7595_tx_2 5 - 146786 147679 . 1 894 0 -chrXIV 146786 147982 HC_gene_7595_tx_6 67 - 146786 147982 . 1 1197 0 -chrXIV 147188 147629 LC_gene_7272_tx_1 1 + 147188 147629 . 1 442 0 -chrXIV 148198 153814 MC_gene_7273_tx_1 1 + 148198 153814 . 1 5617 0 -chrXIV 150109 155030 MC_gene_7273_tx_2 1 + 150109 155030 . 1 4922 0 -chrXIV 150889 151518 MC_gene_7273_tx_3 1 + 150889 151518 . 1 630 0 -chrXIV 153098 155120 MC_gene_7274_tx_1 1 + 153098 155120 . 1 2023 0 -chrXIV 153485 154056 LC_gene_7596_tx_1 1 - 153485 154056 . 1 572 0 -chrXIV 155090 156655 HC_gene_7275_tx_1 1 + 155090 156655 . 1 1566 0 -chrXIV 155090 156656 HC_gene_7275_tx_2 2 + 155090 156656 . 1 1567 0 -chrXIV 155090 156734 HC_gene_7275_tx_3 3 + 155090 156734 . 1 1645 0 -chrXIV 155090 156882 HC_gene_7275_tx_4 4 + 155090 156882 . 1 1793 0 -chrXIV 155090 157035 HC_gene_7275_tx_5 5 + 155090 157035 . 1 1946 0 -chrXIV 156340 157360 HC_gene_7597_tx_1 7 - 156340 157360 . 1 1021 0 -chrXIV 156486 157360 HC_gene_7597_tx_2 67 - 156486 157360 . 1 875 0 -chrXIV 156486 157360 HC_gene_7597_tx_3 1 - 156486 157360 . 2 103,695 0,180 -chrXIV 156627 156882 HC_gene_7275_tx_6 2 + 156627 156882 . 1 256 0 -chrXIV 157529 157895 HC_gene_7598_tx_1 432 - 157529 157895 . 1 367 0 -chrXIV 157529 160382 HC_gene_7598_tx_2 2 - 157529 160382 . 1 2854 0 -chrXIV 157993 159264 HC_gene_7598_tx_4 2 - 157993 159264 . 1 1272 0 -chrXIV 157993 160382 HC_gene_7598_tx_3 17 - 157993 160382 . 1 2390 0 -chrXIV 160587 164377 HC_gene_7599_tx_1 2 - 160587 164377 . 1 3791 0 -chrXIV 160632 161966 MC_gene_7276_tx_1 1 + 160632 161966 . 1 1335 0 -chrXIV 162111 164377 HC_gene_7599_tx_2 1 - 162111 164377 . 1 2267 0 -chrXIV 164537 167141 HC_gene_7277_tx_1 1 + 164537 167141 . 2 233,2064 0,541 -chrXIV 164537 167141 HC_gene_7277_tx_2 14 + 164537 167141 . 1 2605 0 -chrXIV 164537 167141 HC_gene_7277_tx_3 1 + 164537 167141 . 2 1346,1147 0,1458 -chrXIV 164537 167141 HC_gene_7277_tx_4 1 + 164537 167141 . 2 1377,1160 0,1445 -chrXIV 165686 167001 HC_gene_7600_tx_1 2 - 165686 167001 . 1 1316 0 -chrXIV 167179 167334 HC_gene_7601_tx_1 19 - 167179 167334 . 1 156 0 -chrXIV 167179 167426 HC_gene_7601_tx_2 112 - 167179 167426 . 1 248 0 -chrXIV 167179 167633 HC_gene_7601_tx_3 84 - 167179 167633 . 1 455 0 -chrXIV 167179 167817 HC_gene_7601_tx_4 986 - 167179 167817 . 1 639 0 -chrXIV 167179 169266 HC_gene_7601_tx_5 8 - 167179 169266 . 1 2088 0 -chrXIV 167260 167877 LC_gene_7278_tx_1 1 + 167260 167877 . 1 618 0 -chrXIV 168062 168754 MC_gene_7279_tx_1 1 + 168062 168754 . 1 693 0 -chrXIV 169416 169787 HC_gene_7280_tx_1 4 + 169416 169787 . 1 372 0 -chrXIV 169416 170027 HC_gene_7280_tx_2 1 + 169416 170027 . 1 612 0 -chrXIV 169872 171090 LC_gene_7602_tx_1 1 - 169872 171090 . 1 1219 0 -chrXIV 169985 171444 HC_gene_7281_tx_1 24 + 169985 171444 . 1 1460 0 -chrXIV 169985 171444 HC_gene_7281_tx_2 1 + 169985 171444 . 2 841,574 0,886 -chrXIV 171288 172285 HC_gene_7603_tx_1 91 - 171288 172285 . 1 998 0 -chrXIV 171288 172285 HC_gene_7603_tx_2 1 - 171288 172285 . 2 66,863 0,135 -chrXIV 172425 172861 HC_gene_7604_tx_1 9 - 172425 172861 . 1 437 0 -chrXIV 172425 172983 HC_gene_7604_tx_3 6 - 172425 172983 . 1 559 0 -chrXIV 172425 173628 HC_gene_7604_tx_5 7 - 172425 173628 . 1 1204 0 -chrXIV 172425 174011 HC_gene_7604_tx_7 5 - 172425 174011 . 1 1587 0 -chrXIV 172425 174588 HC_gene_7604_tx_9 19 - 172425 174588 . 1 2164 0 -chrXIV 172425 174588 HC_gene_7604_tx_10 1 - 172425 174588 . 2 277,1779 0,385 -chrXIV 172425 174617 HC_gene_7604_tx_11 1 - 172425 174617 . 2 930,995 0,1198 -chrXIV 172506 172861 HC_gene_7604_tx_2 3 - 172506 172861 . 1 356 0 -chrXIV 172506 172983 HC_gene_7604_tx_4 2 - 172506 172983 . 1 478 0 -chrXIV 172506 173628 HC_gene_7604_tx_6 2 - 172506 173628 . 1 1123 0 -chrXIV 172506 174011 HC_gene_7604_tx_8 4 - 172506 174011 . 1 1506 0 -chrXIV 172506 174588 HC_gene_7604_tx_12 15 - 172506 174588 . 1 2083 0 -chrXIV 172786 174438 LC_gene_7282_tx_1 1 + 172786 174438 . 1 1653 0 -chrXIV 174929 175509 MC_gene_7283_tx_1 1 + 174929 175509 . 1 581 0 -chrXIV 175395 179795 MC_gene_7284_tx_1 1 + 175395 179795 . 1 4401 0 -chrXIV 177338 179514 MC_gene_7284_tx_2 1 + 177338 179514 . 1 2177 0 -chrXIV 177813 179873 MC_gene_7284_tx_3 1 + 177813 179873 . 1 2061 0 -chrXIV 178712 179689 MC_gene_7284_tx_4 1 + 178712 179689 . 1 978 0 -chrXIV 178846 181045 HC_gene_7605_tx_1 7 - 178846 181045 . 1 2200 0 -chrXIV 179132 181045 HC_gene_7605_tx_2 2 - 179132 181045 . 1 1914 0 -chrXIV 179700 181099 MC_gene_7285_tx_1 1 + 179700 181099 . 1 1400 0 -chrXIV 180256 180426 MC_gene_7285_tx_2 1 + 180256 180426 . 1 171 0 -chrXIV 181154 181800 HC_gene_7606_tx_1 27 - 181154 181800 . 1 647 0 -chrXIV 181154 182523 HC_gene_7606_tx_2 7 - 181154 182523 . 1 1370 0 -chrXIV 181154 182631 HC_gene_7606_tx_3 1 - 181154 182631 . 2 569,851 0,627 -chrXIV 181154 182644 HC_gene_7606_tx_4 119 - 181154 182644 . 1 1491 0 -chrXIV 181154 182644 HC_gene_7606_tx_5 1 - 181154 182644 . 2 462,955 0,536 -chrXIV 181154 182644 HC_gene_7606_tx_6 1 - 181154 182644 . 2 639,775 0,716 -chrXIV 181154 182644 HC_gene_7606_tx_7 1 - 181154 182644 . 3 602,293,295 0,729,1196 -chrXIV 182887 185384 HC_gene_7286_tx_1 15 + 182887 185384 . 1 2498 0 -chrXIV 183044 185384 HC_gene_7286_tx_2 3 + 183044 185384 . 1 2341 0 -chrXIV 183289 185384 HC_gene_7286_tx_3 1 + 183289 185384 . 1 2096 0 -chrXIV 184005 185080 LC_gene_7607_tx_1 1 - 184005 185080 . 1 1076 0 -chrXIV 184660 185384 HC_gene_7286_tx_4 2 + 184660 185384 . 1 725 0 -chrXIV 184831 185384 HC_gene_7286_tx_5 4 + 184831 185384 . 1 554 0 -chrXIV 184906 185384 HC_gene_7286_tx_6 6 + 184906 185384 . 1 479 0 -chrXIV 185458 185835 HC_gene_7287_tx_1 4 + 185458 185835 . 1 378 0 -chrXIV 185458 185835 HC_gene_7287_tx_2 1 + 185458 185835 . 2 34,249 0,129 -chrXIV 185458 186476 HC_gene_7287_tx_3 1 + 185458 186476 . 1 1019 0 -chrXIV 185458 186628 HC_gene_7287_tx_4 1 + 185458 186628 . 2 34,1050 0,121 -chrXIV 185458 186628 HC_gene_7287_tx_5 6 + 185458 186628 . 2 34,1042 0,129 -chrXIV 185458 186628 HC_gene_7287_tx_6 1 + 185458 186628 . 2 34,1062 0,109 -chrXIV 185458 186628 HC_gene_7287_tx_7 4 + 185458 186628 . 1 1171 0 -chrXIV 185621 186744 HC_gene_7608_tx_1 4 - 185621 186744 . 1 1124 0 -chrXIV 185621 186916 HC_gene_7608_tx_2 18 - 185621 186916 . 1 1296 0 -chrXIV 185621 186916 HC_gene_7608_tx_3 1 - 185621 186916 . 2 487,458 0,838 -chrXIV 185621 186916 HC_gene_7608_tx_4 1 - 185621 186916 . 2 195,1005 0,291 -chrXIV 185699 186628 HC_gene_7288_tx_1 3 + 185699 186628 . 1 930 0 -chrXIV 185699 186776 HC_gene_7288_tx_2 1 + 185699 186776 . 1 1078 0 -chrXIV 185774 186628 HC_gene_7288_tx_3 6 + 185774 186628 . 1 855 0 -chrXIV 185895 186628 HC_gene_7288_tx_4 9 + 185895 186628 . 1 734 0 -chrXIV 187025 187530 HC_gene_7609_tx_1 1297 - 187025 187530 . 1 506 0 -chrXIV 187988 191079 HC_gene_7289_tx_1 1 + 187988 191079 . 2 1493,1328 0,1764 -chrXIV 187988 191079 HC_gene_7289_tx_2 9 + 187988 191079 . 1 3092 0 -chrXIV 187988 191079 HC_gene_7289_tx_3 1 + 187988 191079 . 2 148,2743 0,349 -chrXIV 187988 191079 HC_gene_7289_tx_4 1 + 187988 191079 . 3 663,220,1709 0,1093,1383 -chrXIV 187988 191079 HC_gene_7289_tx_5 1 + 187988 191079 . 3 190,1414,1278 0,315,1814 -chrXIV 187988 191079 HC_gene_7289_tx_6 1 + 187988 191079 . 2 990,1520 0,1572 -chrXIV 188453 191079 HC_gene_7289_tx_7 3 + 188453 191079 . 1 2627 0 -chrXIV 188700 191079 HC_gene_7289_tx_8 2 + 188700 191079 . 1 2380 0 -chrXIV 189101 191079 HC_gene_7289_tx_9 4 + 189101 191079 . 1 1979 0 -chrXIV 189101 191079 HC_gene_7289_tx_10 1 + 189101 191079 . 2 102,1089 0,890 -chrXIV 189847 191079 HC_gene_7289_tx_11 6 + 189847 191079 . 1 1233 0 -chrXIV 190517 191079 HC_gene_7289_tx_12 13 + 190517 191079 . 1 563 0 -chrXIV 191229 195990 MC_gene_7290_tx_1 1 + 191229 195990 . 1 4762 0 -chrXIV 191987 193613 LC_gene_7610_tx_1 1 - 191987 193613 . 1 1627 0 -chrXIV 192503 196150 MC_gene_7290_tx_2 1 + 192503 196150 . 1 3648 0 -chrXIV 193285 193963 MC_gene_7290_tx_3 1 + 193285 193963 . 1 679 0 -chrXIV 194410 194856 MC_gene_7611_tx_1 1 - 194410 194856 . 1 447 0 -chrXIV 196227 196611 HC_gene_7612_tx_1 24 - 196227 196611 . 1 385 0 -chrXIV 196227 196683 HC_gene_7612_tx_2 12 - 196227 196683 . 1 457 0 -chrXIV 196227 196943 HC_gene_7612_tx_3 45 - 196227 196943 . 1 717 0 -chrXIV 196227 198057 HC_gene_7612_tx_4 204 - 196227 198057 . 1 1831 0 -chrXIV 196227 198057 HC_gene_7612_tx_5 1 - 196227 198057 . 2 746,1042 0,789 -chrXIV 196227 198057 HC_gene_7612_tx_6 3 - 196227 198057 . 2 753,1029 0,802 -chrXIV 196227 198057 HC_gene_7612_tx_7 1 - 196227 198057 . 2 1181,600 0,1231 -chrXIV 196227 198057 HC_gene_7612_tx_8 1 - 196227 198057 . 2 1020,104 0,1727 -chrXIV 196227 198057 HC_gene_7612_tx_9 1 - 196227 198057 . 2 783,954 0,877 -chrXIV 196227 198057 HC_gene_7612_tx_10 1 - 196227 198057 . 2 770,954 0,877 -chrXIV 196227 198057 HC_gene_7612_tx_11 3 - 196227 198057 . 2 753,997 0,834 -chrXIV 196227 198057 HC_gene_7612_tx_12 1 - 196227 198057 . 2 512,1015 0,816 -chrXIV 196227 198057 HC_gene_7612_tx_13 1 - 196227 198057 . 2 1079,699 0,1132 -chrXIV 196227 198057 HC_gene_7612_tx_14 1 - 196227 198057 . 2 746,1025 0,806 -chrXIV 197410 197890 LC_gene_7291_tx_1 1 + 197410 197890 . 1 481 0 -chrXIV 198180 198513 MC_gene_7292_tx_1 1 + 198180 198513 . 1 334 0 -chrXIV 198383 199893 HC_gene_7613_tx_1 1 - 198383 199893 . 1 1511 0 -chrXIV 198383 200025 HC_gene_7613_tx_2 53 - 198383 200025 . 1 1643 0 -chrXIV 198451 200574 LC_gene_7293_tx_1 1 + 198451 200574 . 1 2124 0 -chrXIV 200510 202066 HC_gene_7294_tx_1 110 + 200510 202066 . 1 1557 0 -chrXIV 201060 202066 HC_gene_7294_tx_2 13 + 201060 202066 . 1 1007 0 -chrXIV 201280 202066 HC_gene_7294_tx_3 13 + 201280 202066 . 1 787 0 -chrXIV 201412 201971 HC_gene_7614_tx_1 11 - 201412 201971 . 1 560 0 -chrXIV 201480 201971 HC_gene_7614_tx_2 1 - 201480 201971 . 1 492 0 -chrXIV 202145 205007 HC_gene_7295_tx_1 10 + 202145 205007 . 1 2863 0 -chrXIV 203731 205007 HC_gene_7295_tx_2 4 + 203731 205007 . 1 1277 0 -chrXIV 204019 205007 HC_gene_7295_tx_3 7 + 204019 205007 . 1 989 0 -chrXIV 204898 206692 HC_gene_7615_tx_1 9 - 204898 206692 . 1 1795 0 -chrXIV 205140 206746 HC_gene_7296_tx_1 11 + 205140 206746 . 1 1607 0 -chrXIV 205140 206746 HC_gene_7296_tx_2 1 + 205140 206746 . 2 594,962 0,645 -chrXIV 206882 209947 HC_gene_7297_tx_1 7 + 206882 209947 . 1 3066 0 -chrXIV 208483 209947 HC_gene_7297_tx_2 1 + 208483 209947 . 1 1465 0 -chrXIV 208918 209947 HC_gene_7297_tx_3 3 + 208918 209947 . 1 1030 0 -chrXIV 210290 211590 HC_gene_7298_tx_1 14 + 210290 211590 . 1 1301 0 -chrXIV 210442 211590 HC_gene_7298_tx_2 2 + 210442 211590 . 1 1149 0 -chrXIV 211757 214699 HC_gene_7299_tx_1 4 + 211757 214699 . 1 2943 0 -chrXIV 212534 214699 HC_gene_7299_tx_2 1 + 212534 214699 . 1 2166 0 -chrXIV 214894 215929 HC_gene_7300_tx_1 82 + 214894 215929 . 1 1036 0 -chrXIV 214894 215929 HC_gene_7300_tx_2 1 + 214894 215929 . 2 500,421 0,615 -chrXIV 214894 216004 HC_gene_7300_tx_3 5 + 214894 216004 . 1 1111 0 -chrXIV 215138 215929 HC_gene_7300_tx_4 24 + 215138 215929 . 1 792 0 -chrXIV 215138 215929 HC_gene_7300_tx_5 1 + 215138 215929 . 2 434,315 0,477 -chrXIV 215138 216004 HC_gene_7300_tx_6 1 + 215138 216004 . 1 867 0 -chrXIV 215910 216206 HC_gene_7616_tx_1 54 - 215910 216206 . 1 297 0 -chrXIV 215910 216831 HC_gene_7616_tx_2 75 - 215910 216831 . 1 922 0 -chrXIV 215910 217190 HC_gene_7616_tx_3 402 - 215910 217190 . 1 1281 0 -chrXIV 215910 217190 HC_gene_7616_tx_4 1 - 215910 217190 . 2 520,427 0,854 -chrXIV 215910 217190 HC_gene_7616_tx_5 1 - 215910 217190 . 2 894,245 0,1036 -chrXIV 215910 217190 HC_gene_7616_tx_6 1 - 215910 217190 . 2 535,667 0,614 -chrXIV 215910 217190 HC_gene_7616_tx_7 1 - 215910 217190 . 2 370,856 0,425 -chrXIV 215910 217190 HC_gene_7616_tx_8 1 - 215910 217190 . 2 1172,62 0,1219 -chrXIV 215910 217190 HC_gene_7616_tx_9 1 - 215910 217190 . 2 629,530 0,751 -chrXIV 215910 217190 HC_gene_7616_tx_10 1 - 215910 217190 . 2 502,739 0,542 -chrXIV 215910 217190 HC_gene_7616_tx_11 1 - 215910 217190 . 2 455,575 0,706 -chrXIV 215910 217190 HC_gene_7616_tx_12 1 - 215910 217190 . 2 61,909 0,372 -chrXIV 215910 217190 HC_gene_7616_tx_13 1 - 215910 217190 . 3 502,58,427 0,673,854 -chrXIV 215910 217190 HC_gene_7616_tx_14 1 - 215910 217190 . 2 61,1177 0,104 -chrXIV 215910 217190 HC_gene_7616_tx_15 1 - 215910 217190 . 2 332,667 0,614 -chrXIV 216519 217190 HC_gene_7616_tx_16 1 - 216519 217190 . 1 672 0 -chrXIV 216672 217202 LC_gene_7301_tx_1 1 + 216672 217202 . 1 531 0 -chrXIV 217027 217190 HC_gene_7616_tx_17 2 - 217027 217190 . 1 164 0 -chrXIV 217139 217190 HC_gene_7616_tx_18 1 - 217139 217190 . 1 52 0 -chrXIV 217139 218751 HC_gene_7616_tx_19 7 - 217139 218751 . 1 1613 0 -chrXIV 217755 218368 MC_gene_7302_tx_1 1 + 217755 218368 . 1 614 0 -chrXIV 218702 219374 HC_gene_7617_tx_1 2 - 218702 219374 . 1 673 0 -chrXIV 218702 220410 HC_gene_7617_tx_2 2 - 218702 220410 . 1 1709 0 -chrXIV 218890 219293 HC_gene_7617_tx_7 10 - 218890 219293 . 1 404 0 -chrXIV 218890 219374 HC_gene_7617_tx_8 23 - 218890 219374 . 1 485 0 -chrXIV 218890 219655 HC_gene_7617_tx_10 12 - 218890 219655 . 1 766 0 -chrXIV 218890 219755 HC_gene_7617_tx_11 12 - 218890 219755 . 1 866 0 -chrXIV 218890 220211 HC_gene_7617_tx_3 5 - 218890 220211 . 1 1322 0 -chrXIV 218890 220410 HC_gene_7617_tx_4 59 - 218890 220410 . 1 1521 0 -chrXIV 218987 219293 HC_gene_7617_tx_14 9 - 218987 219293 . 1 307 0 -chrXIV 218987 219374 HC_gene_7617_tx_9 7 - 218987 219374 . 1 388 0 -chrXIV 218987 219655 HC_gene_7617_tx_12 6 - 218987 219655 . 1 669 0 -chrXIV 218987 219755 HC_gene_7617_tx_13 9 - 218987 219755 . 1 769 0 -chrXIV 218987 220211 HC_gene_7617_tx_5 5 - 218987 220211 . 1 1225 0 -chrXIV 218987 220410 HC_gene_7617_tx_6 52 - 218987 220410 . 1 1424 0 -chrXIV 220585 221434 HC_gene_7618_tx_1 7 - 220585 221434 . 1 850 0 -chrXIV 220585 221434 HC_gene_7618_tx_2 1 - 220585 221434 . 2 667,121 0,729 -chrXIV 220585 222488 HC_gene_7618_tx_3 34 - 220585 222488 . 1 1904 0 -chrXIV 220585 222488 HC_gene_7618_tx_4 1 - 220585 222488 . 2 659,757 0,1147 -chrXIV 220585 222488 HC_gene_7618_tx_5 1 - 220585 222488 . 2 1405,406 0,1498 -chrXIV 220732 221113 MC_gene_7303_tx_1 1 + 220732 221113 . 1 382 0 -chrXIV 221084 222292 LC_gene_7304_tx_1 1 + 221084 222292 . 1 1209 0 -chrXIV 222368 222727 LC_gene_7305_tx_1 1 + 222368 222727 . 1 360 0 -chrXIV 222585 224502 HC_gene_7619_tx_1 14 - 222585 224502 . 1 1918 0 -chrXIV 222585 224502 HC_gene_7619_tx_2 1 - 222585 224502 . 2 853,947 0,971 -chrXIV 224676 225589 HC_gene_7620_tx_1 1 - 224676 225589 . 2 380,433 0,481 -chrXIV 224676 225589 HC_gene_7620_tx_2 3 - 224676 225589 . 1 914 0 -chrXIV 224676 226760 HC_gene_7620_tx_3 1 - 224676 226760 . 1 2085 0 -chrXIV 224676 227185 HC_gene_7620_tx_4 9 - 224676 227185 . 1 2510 0 -chrXIV 224740 225582 LC_gene_7306_tx_1 1 + 224740 225582 . 1 843 0 -chrXIV 227365 228938 HC_gene_7307_tx_1 8 + 227365 228938 . 1 1574 0 -chrXIV 227365 228938 HC_gene_7307_tx_2 1 + 227365 228938 . 2 481,1047 0,527 -chrXIV 228260 228776 LC_gene_7621_tx_1 1 - 228260 228776 . 1 517 0 -chrXIV 228790 229214 MC_gene_7622_tx_1 1 - 228790 229214 . 1 425 0 -chrXIV 229056 229868 HC_gene_7308_tx_1 46 + 229056 229868 . 1 813 0 -chrXIV 229056 229997 HC_gene_7308_tx_2 1 + 229056 229997 . 1 942 0 -chrXIV 229056 231070 HC_gene_7308_tx_3 1 + 229056 231070 . 1 2015 0 -chrXIV 229484 229868 HC_gene_7308_tx_4 11 + 229484 229868 . 1 385 0 -chrXIV 229484 229997 HC_gene_7308_tx_5 2 + 229484 229997 . 1 514 0 -chrXIV 229763 230672 HC_gene_7623_tx_1 2 - 229763 230672 . 1 910 0 -chrXIV 230689 233778 HC_gene_7624_tx_1 1 - 230689 233778 . 1 3090 0 -chrXIV 230689 233778 HC_gene_7624_tx_2 1 - 230689 233778 . 2 765,1623 0,1467 -chrXIV 230689 234102 HC_gene_7624_tx_3 2 - 230689 234102 . 1 3414 0 -chrXIV 230886 233065 HC_gene_7624_tx_9 1 - 230886 233065 . 1 2180 0 -chrXIV 230886 233778 HC_gene_7624_tx_4 12 - 230886 233778 . 1 2893 0 -chrXIV 230886 233932 HC_gene_7624_tx_5 1 - 230886 233932 . 1 3047 0 -chrXIV 230886 234102 HC_gene_7624_tx_6 6 - 230886 234102 . 1 3217 0 -chrXIV 230984 233778 HC_gene_7624_tx_7 2 - 230984 233778 . 1 2795 0 -chrXIV 230984 234102 HC_gene_7624_tx_8 1 - 230984 234102 . 1 3119 0 -chrXIV 234016 234260 MC_gene_7309_tx_1 1 + 234016 234260 . 1 245 0 -chrXIV 234321 235811 HC_gene_7310_tx_1 365 + 234321 235811 . 1 1491 0 -chrXIV 234321 235811 HC_gene_7310_tx_2 1 + 234321 235811 . 2 821,624 0,867 -chrXIV 234321 235811 HC_gene_7310_tx_3 1 + 234321 235811 . 2 812,608 0,883 -chrXIV 234321 235811 HC_gene_7310_tx_4 1 + 234321 235811 . 2 698,680 0,811 -chrXIV 234321 235811 HC_gene_7310_tx_5 1 + 234321 235811 . 2 720,680 0,811 -chrXIV 234321 235811 HC_gene_7310_tx_6 1 + 234321 235811 . 2 774,624 0,867 -chrXIV 234321 235811 HC_gene_7310_tx_7 1 + 234321 235811 . 2 807,555 0,936 -chrXIV 234321 235811 HC_gene_7310_tx_8 1 + 234321 235811 . 2 155,1236 0,255 -chrXIV 234321 235811 HC_gene_7310_tx_9 1 + 234321 235811 . 2 840,566 0,925 -chrXIV 234321 235811 HC_gene_7310_tx_10 1 + 234321 235811 . 2 807,624 0,867 -chrXIV 234342 235811 HC_gene_7310_tx_11 1 + 234342 235811 . 2 846,566 0,904 -chrXIV 234348 235811 HC_gene_7310_tx_12 1 + 234348 235811 . 2 750,680 0,784 -chrXIV 234357 235811 HC_gene_7310_tx_13 1 + 234357 235811 . 2 758,612 0,843 -chrXIV 234401 235811 HC_gene_7310_tx_14 1 + 234401 235811 . 2 170,1189 0,222 -chrXIV 234551 235811 HC_gene_7310_tx_15 27 + 234551 235811 . 1 1261 0 -chrXIV 234551 235811 HC_gene_7310_tx_16 1 + 234551 235811 . 2 127,1094 0,167 -chrXIV 234694 235811 HC_gene_7310_tx_17 13 + 234694 235811 . 1 1118 0 -chrXIV 234822 235811 HC_gene_7310_tx_18 69 + 234822 235811 . 1 990 0 -chrXIV 234822 235811 HC_gene_7310_tx_19 1 + 234822 235811 . 2 306,624 0,366 -chrXIV 234822 235811 HC_gene_7310_tx_20 1 + 234822 235811 . 2 171,754 0,236 -chrXIV 235097 235811 HC_gene_7310_tx_21 10 + 235097 235811 . 1 715 0 -chrXIV 235097 235811 HC_gene_7310_tx_22 1 + 235097 235811 . 2 592,43 0,672 -chrXIV 235182 235811 HC_gene_7310_tx_23 62 + 235182 235811 . 1 630 0 -chrXIV 235292 235811 HC_gene_7310_tx_24 43 + 235292 235811 . 1 520 0 -chrXIV 235352 235811 HC_gene_7310_tx_25 22 + 235352 235811 . 1 460 0 -chrXIV 235839 237471 HC_gene_7625_tx_1 3 - 235839 237471 . 1 1633 0 -chrXIV 235839 237649 HC_gene_7625_tx_2 1 - 235839 237649 . 1 1811 0 -chrXIV 235839 237809 HC_gene_7625_tx_3 43 - 235839 237809 . 1 1971 0 -chrXIV 237994 240041 HC_gene_7311_tx_1 1 + 237994 240041 . 1 2048 0 -chrXIV 237994 240179 HC_gene_7311_tx_2 2 + 237994 240179 . 1 2186 0 -chrXIV 237994 240179 HC_gene_7311_tx_3 1 + 237994 240179 . 2 1149,950 0,1236 -chrXIV 237994 240259 HC_gene_7311_tx_4 1 + 237994 240259 . 1 2266 0 -chrXIV 237994 240533 HC_gene_7311_tx_5 1 + 237994 240533 . 1 2540 0 -chrXIV 238202 240179 HC_gene_7311_tx_6 6 + 238202 240179 . 1 1978 0 -chrXIV 238202 240259 HC_gene_7311_tx_7 2 + 238202 240259 . 1 2058 0 -chrXIV 238202 240533 HC_gene_7311_tx_8 1 + 238202 240533 . 1 2332 0 -chrXIV 238215 240179 HC_gene_7311_tx_9 1 + 238215 240179 . 1 1965 0 -chrXIV 239324 239854 MC_gene_7626_tx_1 1 - 239324 239854 . 1 531 0 -chrXIV 240194 240533 HC_gene_7311_tx_10 2 + 240194 240533 . 1 340 0 -chrXIV 240194 241432 HC_gene_7311_tx_11 16 + 240194 241432 . 1 1239 0 -chrXIV 240194 241432 HC_gene_7311_tx_12 1 + 240194 241432 . 2 524,238 0,1001 -chrXIV 240303 240533 HC_gene_7311_tx_17 1 + 240303 240533 . 1 231 0 -chrXIV 240303 241432 HC_gene_7311_tx_13 49 + 240303 241432 . 1 1130 0 -chrXIV 240303 241432 HC_gene_7311_tx_14 1 + 240303 241432 . 2 798,219 0,911 -chrXIV 240369 240997 MC_gene_7627_tx_1 1 - 240369 240997 . 1 629 0 -chrXIV 240479 241432 HC_gene_7311_tx_15 8 + 240479 241432 . 1 954 0 -chrXIV 240620 241432 HC_gene_7311_tx_16 10 + 240620 241432 . 1 813 0 -chrXIV 240897 241432 HC_gene_7311_tx_18 9 + 240897 241432 . 1 536 0 -chrXIV 240897 241432 HC_gene_7311_tx_19 1 + 240897 241432 . 2 344,106 0,430 -chrXIV 241010 241432 HC_gene_7311_tx_20 14 + 241010 241432 . 1 423 0 -chrXIV 241636 243247 LC_gene_7628_tx_1 1 - 241636 243247 . 1 1612 0 -chrXIV 241648 244310 HC_gene_7312_tx_1 9 + 241648 244310 . 1 2663 0 -chrXIV 242457 244310 HC_gene_7312_tx_2 1 + 242457 244310 . 1 1854 0 -chrXIV 242748 244310 HC_gene_7312_tx_3 7 + 242748 244310 . 1 1563 0 -chrXIV 243454 244253 MC_gene_7629_tx_1 1 - 243454 244253 . 1 800 0 -chrXIV 244380 245495 HC_gene_7313_tx_1 68 + 244380 245495 . 1 1116 0 -chrXIV 244380 245495 HC_gene_7313_tx_2 1 + 244380 245495 . 2 407,578 0,538 -chrXIV 244380 245495 HC_gene_7313_tx_3 1 + 244380 245495 . 2 407,581 0,535 -chrXIV 244380 246386 HC_gene_7313_tx_5 1 + 244380 246386 . 1 2007 0 -chrXIV 244380 246478 HC_gene_7313_tx_6 1 + 244380 246478 . 1 2099 0 -chrXIV 244380 246478 HC_gene_7313_tx_7 1 + 244380 246478 . 2 215,1815 0,284 -chrXIV 244465 245495 HC_gene_7313_tx_4 1 + 244465 245495 . 2 436,523 0,508 -chrXIV 244697 245495 HC_gene_7313_tx_8 16 + 244697 245495 . 1 799 0 -chrXIV 244760 245495 HC_gene_7313_tx_9 11 + 244760 245495 . 1 736 0 -chrXIV 244883 245495 HC_gene_7313_tx_10 9 + 244883 245495 . 1 613 0 -chrXIV 244943 245495 HC_gene_7313_tx_11 45 + 244943 245495 . 1 553 0 -chrXIV 245151 245495 HC_gene_7313_tx_12 13 + 245151 245495 . 1 345 0 -chrXIV 245151 246478 HC_gene_7313_tx_13 1 + 245151 246478 . 2 85,1174 0,154 -chrXIV 245596 246386 HC_gene_7313_tx_14 1 + 245596 246386 . 1 791 0 -chrXIV 245596 246478 HC_gene_7313_tx_15 19 + 245596 246478 . 1 883 0 -chrXIV 245717 246478 HC_gene_7313_tx_16 1 + 245717 246478 . 1 762 0 -chrXIV 246364 246842 HC_gene_7630_tx_1 14 - 246364 246842 . 1 479 0 -chrXIV 246364 246956 HC_gene_7630_tx_2 8 - 246364 246956 . 1 593 0 -chrXIV 246364 247193 HC_gene_7630_tx_3 73 - 246364 247193 . 1 830 0 -chrXIV 246364 247193 HC_gene_7630_tx_4 1 - 246364 247193 . 2 545,191 0,639 -chrXIV 246364 247193 HC_gene_7630_tx_5 1 - 246364 247193 . 2 101,675 0,155 -chrXIV 247418 249969 HC_gene_7314_tx_1 1 + 247418 249969 . 2 748,1716 0,836 -chrXIV 247426 248221 HC_gene_7314_tx_9 3 + 247426 248221 . 1 796 0 -chrXIV 247426 249969 HC_gene_7314_tx_2 29 + 247426 249969 . 1 2544 0 -chrXIV 247426 249969 HC_gene_7314_tx_3 1 + 247426 249969 . 2 1397,1090 0,1454 -chrXIV 247426 249969 HC_gene_7314_tx_4 1 + 247426 249969 . 2 1356,1067 0,1477 -chrXIV 247426 249969 HC_gene_7314_tx_5 1 + 247426 249969 . 2 1410,1036 0,1508 -chrXIV 247426 249969 HC_gene_7314_tx_6 1 + 247426 249969 . 2 1356,1071 0,1473 -chrXIV 247426 249969 HC_gene_7314_tx_7 1 + 247426 249969 . 2 110,2364 0,180 -chrXIV 247637 249969 HC_gene_7314_tx_8 3 + 247637 249969 . 1 2333 0 -chrXIV 248150 249969 HC_gene_7314_tx_10 5 + 248150 249969 . 1 1820 0 -chrXIV 248448 249969 HC_gene_7314_tx_11 3 + 248448 249969 . 1 1522 0 -chrXIV 249825 250367 HC_gene_7631_tx_1 47 - 249825 250367 . 1 543 0 -chrXIV 249825 251734 HC_gene_7631_tx_2 7 - 249825 251734 . 1 1910 0 -chrXIV 250190 250367 HC_gene_7631_tx_4 2 - 250190 250367 . 1 178 0 -chrXIV 250190 251734 HC_gene_7631_tx_3 4 - 250190 251734 . 1 1545 0 -chrXIV 252035 254042 HC_gene_7315_tx_1 725 + 252035 254042 . 1 2008 0 -chrXIV 252035 254042 HC_gene_7315_tx_2 1 + 252035 254042 . 2 1858,96 0,1912 -chrXIV 252035 254042 HC_gene_7315_tx_3 2 + 252035 254042 . 2 1825,84 0,1924 -chrXIV 252035 254042 HC_gene_7315_tx_4 1 + 252035 254042 . 2 1821,84 0,1924 -chrXIV 252035 254042 HC_gene_7315_tx_5 1 + 252035 254042 . 2 979,979 0,1029 -chrXIV 252035 254042 HC_gene_7315_tx_6 1 + 252035 254042 . 2 1822,115 0,1893 -chrXIV 252035 254042 HC_gene_7315_tx_7 1 + 252035 254042 . 2 720,1037 0,971 -chrXIV 252035 254042 HC_gene_7315_tx_8 1 + 252035 254042 . 2 1117,833 0,1175 -chrXIV 252035 254042 HC_gene_7315_tx_9 1 + 252035 254042 . 2 505,846 0,1162 -chrXIV 252035 254042 HC_gene_7315_tx_10 1 + 252035 254042 . 2 55,1902 0,106 -chrXIV 252035 254042 HC_gene_7315_tx_11 1 + 252035 254042 . 2 51,1536 0,472 -chrXIV 252035 254042 HC_gene_7315_tx_12 1 + 252035 254042 . 2 1045,850 0,1158 -chrXIV 252035 254042 HC_gene_7315_tx_13 1 + 252035 254042 . 2 1855,104 0,1904 -chrXIV 252035 254042 HC_gene_7315_tx_14 1 + 252035 254042 . 2 1846,84 0,1924 -chrXIV 252035 254042 HC_gene_7315_tx_15 1 + 252035 254042 . 2 1855,74 0,1934 -chrXIV 252035 254042 HC_gene_7315_tx_16 1 + 252035 254042 . 2 1836,84 0,1924 -chrXIV 252035 254042 HC_gene_7315_tx_17 1 + 252035 254042 . 2 492,1310 0,698 -chrXIV 252035 254042 HC_gene_7315_tx_18 1 + 252035 254042 . 2 1153,748 0,1260 -chrXIV 252035 254042 HC_gene_7315_tx_19 1 + 252035 254042 . 2 500,1101 0,907 -chrXIV 252035 254042 HC_gene_7315_tx_20 1 + 252035 254042 . 2 1853,103 0,1905 -chrXIV 252035 254042 HC_gene_7315_tx_21 1 + 252035 254042 . 2 1839,84 0,1924 -chrXIV 252035 254042 HC_gene_7315_tx_22 1 + 252035 254042 . 2 970,677 0,1331 -chrXIV 252035 254042 HC_gene_7315_tx_23 1 + 252035 254042 . 2 1825,105 0,1903 -chrXIV 252035 254042 HC_gene_7315_tx_24 1 + 252035 254042 . 2 1012,933 0,1075 -chrXIV 252035 254042 HC_gene_7315_tx_25 1 + 252035 254042 . 2 1845,107 0,1901 -chrXIV 252035 254042 HC_gene_7315_tx_26 1 + 252035 254042 . 2 1821,70 0,1938 -chrXIV 252035 254042 HC_gene_7315_tx_27 1 + 252035 254042 . 2 637,1265 0,743 -chrXIV 252035 254042 HC_gene_7315_tx_28 1 + 252035 254042 . 2 1135,833 0,1175 -chrXIV 252035 254042 HC_gene_7315_tx_29 1 + 252035 254042 . 2 1103,862 0,1146 -chrXIV 252035 254042 HC_gene_7315_tx_30 1 + 252035 254042 . 2 1815,93 0,1915 -chrXIV 252035 254042 HC_gene_7315_tx_31 1 + 252035 254042 . 2 1174,775 0,1233 -chrXIV 252035 254042 HC_gene_7315_tx_32 1 + 252035 254042 . 2 677,1160 0,848 -chrXIV 252035 254042 HC_gene_7315_tx_33 1 + 252035 254042 . 2 663,879 0,1129 -chrXIV 252035 254042 HC_gene_7315_tx_34 1 + 252035 254042 . 2 997,910 0,1098 -chrXIV 252208 254042 HC_gene_7315_tx_35 1 + 252208 254042 . 2 290,1324 0,511 -chrXIV 252305 254042 HC_gene_7315_tx_36 107 + 252305 254042 . 1 1738 0 -chrXIV 252305 254042 HC_gene_7315_tx_37 1 + 252305 254042 . 2 1021,643 0,1095 -chrXIV 252305 254042 HC_gene_7315_tx_38 1 + 252305 254042 . 2 454,862 0,876 -chrXIV 252305 254042 HC_gene_7315_tx_39 1 + 252305 254042 . 3 415,314,821 0,467,917 -chrXIV 252305 254042 HC_gene_7315_tx_40 1 + 252305 254042 . 2 892,648 0,1090 -chrXIV 252305 254042 HC_gene_7315_tx_41 1 + 252305 254042 . 2 966,665 0,1073 -chrXIV 252305 254042 HC_gene_7315_tx_42 1 + 252305 254042 . 2 1072,602 0,1136 -chrXIV 252491 254042 HC_gene_7315_tx_43 73 + 252491 254042 . 1 1552 0 -chrXIV 252491 254042 HC_gene_7315_tx_44 1 + 252491 254042 . 2 1380,124 0,1428 -chrXIV 253082 254042 HC_gene_7315_tx_45 133 + 253082 254042 . 1 961 0 -chrXIV 253082 254042 HC_gene_7315_tx_46 1 + 253082 254042 . 2 454,441 0,520 -chrXIV 253082 254042 HC_gene_7315_tx_47 1 + 253082 254042 . 2 118,719 0,242 -chrXIV 253082 254042 HC_gene_7315_tx_48 1 + 253082 254042 . 2 789,70 0,891 -chrXIV 253082 254042 HC_gene_7315_tx_49 1 + 253082 254042 . 2 828,86 0,875 -chrXIV 253238 254042 HC_gene_7315_tx_50 297 + 253238 254042 . 1 805 0 -chrXIV 253238 254042 HC_gene_7315_tx_51 1 + 253238 254042 . 2 650,84 0,721 -chrXIV 253238 254042 HC_gene_7315_tx_52 1 + 253238 254042 . 2 636,70 0,735 -chrXIV 253238 254042 HC_gene_7315_tx_53 1 + 253238 254042 . 2 672,75 0,730 -chrXIV 253404 254042 HC_gene_7315_tx_54 201 + 253404 254042 . 1 639 0 -chrXIV 253404 254042 HC_gene_7315_tx_55 1 + 253404 254042 . 2 456,105 0,534 -chrXIV 253556 254042 HC_gene_7315_tx_56 364 + 253556 254042 . 1 487 0 -chrXIV 253556 254042 HC_gene_7315_tx_57 1 + 253556 254042 . 2 77,265 0,222 -chrXIV 253556 254042 HC_gene_7315_tx_58 1 + 253556 254042 . 2 334,104 0,383 -chrXIV 253556 254042 HC_gene_7315_tx_59 1 + 253556 254042 . 2 236,193 0,294 -chrXIV 253897 255025 HC_gene_7632_tx_1 2 - 253897 255025 . 1 1129 0 -chrXIV 254398 255115 HC_gene_7316_tx_1 994 + 254398 255115 . 1 718 0 -chrXIV 254583 255115 HC_gene_7316_tx_2 198 + 254583 255115 . 1 533 0 -chrXIV 255211 256812 HC_gene_7317_tx_1 51 + 255211 256812 . 1 1602 0 -chrXIV 255211 257759 HC_gene_7317_tx_3 1 + 255211 257759 . 1 2549 0 -chrXIV 255340 256812 HC_gene_7317_tx_2 2 + 255340 256812 . 1 1473 0 -chrXIV 256167 256812 HC_gene_7317_tx_4 10 + 256167 256812 . 1 646 0 -chrXIV 256544 257044 HC_gene_7633_tx_1 2 - 256544 257044 . 1 501 0 -chrXIV 256544 257243 HC_gene_7633_tx_2 2 - 256544 257243 . 1 700 0 -chrXIV 256544 258162 HC_gene_7633_tx_11 1 - 256544 258162 . 1 1619 0 -chrXIV 256662 258162 HC_gene_7633_tx_12 1 - 256662 258162 . 1 1501 0 -chrXIV 256663 257243 HC_gene_7633_tx_3 1 - 256663 257243 . 1 581 0 -chrXIV 256664 257044 HC_gene_7633_tx_29 1 - 256664 257044 . 1 381 0 -chrXIV 256664 257427 HC_gene_7633_tx_38 1 - 256664 257427 . 1 764 0 -chrXIV 256672 257243 HC_gene_7633_tx_4 1 - 256672 257243 . 1 572 0 -chrXIV 256674 257427 HC_gene_7633_tx_39 1 - 256674 257427 . 1 754 0 -chrXIV 256682 257044 HC_gene_7633_tx_30 1 - 256682 257044 . 1 363 0 -chrXIV 256684 258162 HC_gene_7633_tx_13 1 - 256684 258162 . 1 1479 0 -chrXIV 256687 257044 HC_gene_7633_tx_31 1 - 256687 257044 . 1 358 0 -chrXIV 256688 257427 HC_gene_7633_tx_40 2 - 256688 257427 . 1 740 0 -chrXIV 256688 258162 HC_gene_7633_tx_14 1 - 256688 258162 . 2 671,686 0,789 -chrXIV 256689 257243 HC_gene_7633_tx_5 3 - 256689 257243 . 1 555 0 -chrXIV 256689 257427 HC_gene_7633_tx_41 1 - 256689 257427 . 1 739 0 -chrXIV 256689 258162 HC_gene_7633_tx_15 1 - 256689 258162 . 1 1474 0 -chrXIV 256690 257044 HC_gene_7633_tx_32 1 - 256690 257044 . 1 355 0 -chrXIV 256690 257243 HC_gene_7633_tx_6 1 - 256690 257243 . 1 554 0 -chrXIV 256690 258162 HC_gene_7633_tx_16 1 - 256690 258162 . 1 1473 0 -chrXIV 256695 257427 HC_gene_7633_tx_42 2 - 256695 257427 . 1 733 0 -chrXIV 256696 257427 HC_gene_7633_tx_43 1 - 256696 257427 . 1 732 0 -chrXIV 256696 258162 HC_gene_7633_tx_17 1 - 256696 258162 . 1 1467 0 -chrXIV 256697 258162 HC_gene_7633_tx_18 1 - 256697 258162 . 1 1466 0 -chrXIV 256701 257044 HC_gene_7633_tx_33 1 - 256701 257044 . 1 344 0 -chrXIV 256705 257427 HC_gene_7633_tx_44 1 - 256705 257427 . 1 723 0 -chrXIV 256706 257427 HC_gene_7633_tx_45 1 - 256706 257427 . 1 722 0 -chrXIV 256708 257044 HC_gene_7633_tx_34 1 - 256708 257044 . 1 337 0 -chrXIV 256708 257243 HC_gene_7633_tx_7 2 - 256708 257243 . 1 536 0 -chrXIV 256708 258162 HC_gene_7633_tx_19 1 - 256708 258162 . 1 1455 0 -chrXIV 256709 257427 HC_gene_7633_tx_46 1 - 256709 257427 . 1 719 0 -chrXIV 256709 258162 HC_gene_7633_tx_20 1 - 256709 258162 . 1 1454 0 -chrXIV 256710 258162 HC_gene_7633_tx_21 1 - 256710 258162 . 1 1453 0 -chrXIV 256713 257044 HC_gene_7633_tx_35 1 - 256713 257044 . 1 332 0 -chrXIV 256713 257243 HC_gene_7633_tx_8 1 - 256713 257243 . 1 531 0 -chrXIV 256713 257427 HC_gene_7633_tx_47 3 - 256713 257427 . 1 715 0 -chrXIV 256713 257987 HC_gene_7633_tx_22 2 - 256713 257987 . 1 1275 0 -chrXIV 256713 258162 HC_gene_7633_tx_23 5 - 256713 258162 . 1 1450 0 -chrXIV 256717 257044 HC_gene_7633_tx_36 1 - 256717 257044 . 1 328 0 -chrXIV 256717 258162 HC_gene_7633_tx_24 1 - 256717 258162 . 1 1446 0 -chrXIV 256723 257243 HC_gene_7633_tx_9 1 - 256723 257243 . 1 521 0 -chrXIV 256724 257044 HC_gene_7633_tx_37 1 - 256724 257044 . 1 321 0 -chrXIV 256724 258162 HC_gene_7633_tx_25 1 - 256724 258162 . 1 1439 0 -chrXIV 256725 257987 HC_gene_7633_tx_26 1 - 256725 257987 . 1 1263 0 -chrXIV 256725 258162 HC_gene_7633_tx_27 3 - 256725 258162 . 1 1438 0 -chrXIV 256727 257243 HC_gene_7633_tx_10 1 - 256727 257243 . 1 517 0 -chrXIV 256733 258162 HC_gene_7633_tx_28 1 - 256733 258162 . 1 1430 0 -chrXIV 258335 260222 MC_gene_7634_tx_1 1 - 258335 260222 . 1 1888 0 -chrXIV 259555 260567 HC_gene_7318_tx_1 7 + 259555 260567 . 1 1013 0 -chrXIV 260102 260567 HC_gene_7318_tx_2 3 + 260102 260567 . 1 466 0 -chrXIV 260431 262908 HC_gene_7635_tx_1 3 - 260431 262908 . 1 2478 0 -chrXIV 260431 262908 HC_gene_7635_tx_2 1 - 260431 262908 . 2 1325,240 0,2238 -chrXIV 260431 263287 HC_gene_7635_tx_3 2 - 260431 263287 . 1 2857 0 -chrXIV 260431 263469 HC_gene_7635_tx_4 12 - 260431 263469 . 1 3039 0 -chrXIV 260431 263469 HC_gene_7635_tx_5 1 - 260431 263469 . 2 739,1967 0,1072 -chrXIV 260431 263469 HC_gene_7635_tx_6 1 - 260431 263469 . 2 1968,994 0,2045 -chrXIV 263625 264064 HC_gene_7636_tx_1 7 - 263625 264064 . 1 440 0 -chrXIV 263625 264346 HC_gene_7636_tx_2 40 - 263625 264346 . 1 722 0 -chrXIV 263625 264553 HC_gene_7636_tx_3 41 - 263625 264553 . 1 929 0 -chrXIV 263625 264553 HC_gene_7636_tx_4 1 - 263625 264553 . 2 550,302 0,627 -chrXIV 263625 264553 HC_gene_7636_tx_5 1 - 263625 264553 . 2 502,325 0,604 -chrXIV 263684 264834 MC_gene_7319_tx_1 1 + 263684 264834 . 1 1151 0 -chrXIV 264758 265654 HC_gene_7637_tx_1 13 - 264758 265654 . 1 897 0 -chrXIV 264758 265821 HC_gene_7637_tx_2 6 - 264758 265821 . 1 1064 0 -chrXIV 264758 265946 HC_gene_7637_tx_3 2 - 264758 265946 . 1 1189 0 -chrXIV 264758 266650 HC_gene_7637_tx_4 31 - 264758 266650 . 1 1893 0 -chrXIV 266912 267508 HC_gene_7638_tx_1 1 - 266912 267508 . 2 67,432 0,165 -chrXIV 266912 267508 HC_gene_7638_tx_2 8 - 266912 267508 . 1 597 0 -chrXIV 266912 267680 HC_gene_7638_tx_3 7 - 266912 267680 . 1 769 0 -chrXIV 266912 268293 HC_gene_7638_tx_4 1 - 266912 268293 . 2 84,1195 0,187 -chrXIV 266912 268293 HC_gene_7638_tx_5 6 - 266912 268293 . 1 1382 0 -chrXIV 266912 268527 HC_gene_7638_tx_6 4 - 266912 268527 . 1 1616 0 -chrXIV 266912 269422 HC_gene_7638_tx_7 1 - 266912 269422 . 1 2511 0 -chrXIV 266912 269615 HC_gene_7638_tx_8 3 - 266912 269615 . 1 2704 0 -chrXIV 266912 269819 HC_gene_7638_tx_9 1 - 266912 269819 . 2 2355,171 0,2737 -chrXIV 266912 269819 HC_gene_7638_tx_10 1 - 266912 269819 . 1 2908 0 -chrXIV 266912 269932 HC_gene_7638_tx_11 1 - 266912 269932 . 2 968,1384 0,1637 -chrXIV 266912 269932 HC_gene_7638_tx_12 7 - 266912 269932 . 1 3021 0 -chrXIV 266912 269932 HC_gene_7638_tx_13 1 - 266912 269932 . 2 1359,1492 0,1529 -chrXIV 267126 267503 LC_gene_7320_tx_1 1 + 267126 267503 . 1 378 0 -chrXIV 267299 268293 HC_gene_7638_tx_16 1 - 267299 268293 . 1 995 0 -chrXIV 267425 269932 HC_gene_7638_tx_14 2 - 267425 269932 . 1 2508 0 -chrXIV 267425 269932 HC_gene_7638_tx_15 1 - 267425 269932 . 2 235,2149 0,359 -chrXIV 270162 270954 HC_gene_7321_tx_1 2 + 270162 270954 . 1 793 0 -chrXIV 270162 271022 HC_gene_7321_tx_2 1 + 270162 271022 . 1 861 0 -chrXIV 270162 271201 HC_gene_7321_tx_3 1 + 270162 271201 . 1 1040 0 -chrXIV 270288 270954 HC_gene_7321_tx_4 1 + 270288 270954 . 1 667 0 -chrXIV 270288 271022 HC_gene_7321_tx_5 2 + 270288 271022 . 1 735 0 -chrXIV 270288 271201 HC_gene_7321_tx_6 4 + 270288 271201 . 1 914 0 -chrXIV 271427 271775 HC_gene_7639_tx_1 14 - 271427 271775 . 1 349 0 -chrXIV 271427 271991 HC_gene_7639_tx_2 2 - 271427 271991 . 1 565 0 -chrXIV 271427 272051 HC_gene_7639_tx_3 2 - 271427 272051 . 1 625 0 -chrXIV 271427 273689 HC_gene_7639_tx_4 1 - 271427 273689 . 2 961,92 0,2171 -chrXIV 272018 272586 HC_gene_7322_tx_1 5 + 272018 272586 . 1 569 0 -chrXIV 272172 272586 HC_gene_7322_tx_2 1 + 272172 272586 . 1 415 0 -chrXIV 274347 274635 HC_gene_7323_tx_1 2 + 274347 274635 . 1 289 0 -chrXIV 274347 276102 HC_gene_7323_tx_2 11 + 274347 276102 . 1 1756 0 -chrXIV 275212 275718 HC_gene_7640_tx_1 4 - 275212 275718 . 1 507 0 -chrXIV 275212 275817 HC_gene_7640_tx_2 1 - 275212 275817 . 1 606 0 -chrXIV 275800 276102 HC_gene_7323_tx_3 7 + 275800 276102 . 1 303 0 -chrXIV 275800 276333 HC_gene_7323_tx_4 1 + 275800 276333 . 1 534 0 -chrXIV 276386 278914 HC_gene_7324_tx_1 1 + 276386 278914 . 1 2529 0 -chrXIV 276386 279897 HC_gene_7324_tx_2 1 + 276386 279897 . 1 3512 0 -chrXIV 276386 279989 HC_gene_7324_tx_3 22 + 276386 279989 . 1 3604 0 -chrXIV 276386 279989 HC_gene_7324_tx_4 1 + 276386 279989 . 3 2574,191,713 0,2653,2891 -chrXIV 276506 279989 HC_gene_7324_tx_5 1 + 276506 279989 . 2 298,2888 0,596 -chrXIV 276510 279989 HC_gene_7324_tx_6 1 + 276510 279989 . 2 905,2470 0,1010 -chrXIV 276590 279989 HC_gene_7324_tx_7 1 + 276590 279989 . 1 3400 0 -chrXIV 276661 279989 HC_gene_7324_tx_8 1 + 276661 279989 . 1 3329 0 -chrXIV 276785 279989 HC_gene_7324_tx_9 2 + 276785 279989 . 1 3205 0 -chrXIV 277219 279989 HC_gene_7324_tx_10 2 + 277219 279989 . 1 2771 0 -chrXIV 277408 279897 HC_gene_7324_tx_11 1 + 277408 279897 . 1 2490 0 -chrXIV 277408 279989 HC_gene_7324_tx_12 10 + 277408 279989 . 1 2582 0 -chrXIV 277834 279989 HC_gene_7324_tx_13 4 + 277834 279989 . 1 2156 0 -chrXIV 277959 279989 HC_gene_7324_tx_14 6 + 277959 279989 . 1 2031 0 -chrXIV 277959 279989 HC_gene_7324_tx_15 1 + 277959 279989 . 2 224,1646 0,385 -chrXIV 278065 279989 HC_gene_7324_tx_16 5 + 278065 279989 . 1 1925 0 -chrXIV 278324 279555 HC_gene_7324_tx_21 1 + 278324 279555 . 1 1232 0 -chrXIV 278324 279989 HC_gene_7324_tx_17 4 + 278324 279989 . 1 1666 0 -chrXIV 278612 279989 HC_gene_7324_tx_18 11 + 278612 279989 . 1 1378 0 -chrXIV 278775 279897 HC_gene_7324_tx_19 2 + 278775 279897 . 1 1123 0 -chrXIV 278775 279989 HC_gene_7324_tx_20 14 + 278775 279989 . 1 1215 0 -chrXIV 279439 279989 HC_gene_7324_tx_22 21 + 279439 279989 . 1 551 0 -chrXIV 279859 280249 MC_gene_7641_tx_1 1 - 279859 280249 . 1 391 0 -chrXIV 279888 280140 MC_gene_7641_tx_2 1 - 279888 280140 . 1 253 0 -chrXIV 280372 281608 HC_gene_7325_tx_1 39 + 280372 281608 . 1 1237 0 -chrXIV 280903 281248 LC_gene_7642_tx_1 1 - 280903 281248 . 1 346 0 -chrXIV 281266 281608 HC_gene_7325_tx_2 2 + 281266 281608 . 1 343 0 -chrXIV 281268 281533 MC_gene_7643_tx_1 1 - 281268 281533 . 1 266 0 -chrXIV 282107 283630 HC_gene_7326_tx_1 1 + 282107 283630 . 2 871,509 0,1015 -chrXIV 282172 283466 HC_gene_7326_tx_2 20 + 282172 283466 . 1 1295 0 -chrXIV 282172 283630 HC_gene_7326_tx_3 631 + 282172 283630 . 1 1459 0 -chrXIV 282172 283630 HC_gene_7326_tx_4 1 + 282172 283630 . 2 1001,411 0,1048 -chrXIV 282172 283630 HC_gene_7326_tx_5 1 + 282172 283630 . 2 242,1180 0,279 -chrXIV 282172 283630 HC_gene_7326_tx_6 1 + 282172 283630 . 2 236,1033 0,426 -chrXIV 282172 283630 HC_gene_7326_tx_7 1 + 282172 283630 . 2 143,939 0,520 -chrXIV 282172 283630 HC_gene_7326_tx_8 1 + 282172 283630 . 2 60,1147 0,312 -chrXIV 282172 283630 HC_gene_7326_tx_9 1 + 282172 283630 . 2 56,1302 0,157 -chrXIV 282172 283630 HC_gene_7326_tx_10 1 + 282172 283630 . 2 874,547 0,912 -chrXIV 282172 283630 HC_gene_7326_tx_11 1 + 282172 283630 . 2 89,1039 0,420 -chrXIV 282172 283630 HC_gene_7326_tx_12 1 + 282172 283630 . 2 887,528 0,931 -chrXIV 282172 283630 HC_gene_7326_tx_13 1 + 282172 283630 . 2 146,1180 0,279 -chrXIV 282172 283630 HC_gene_7326_tx_14 1 + 282172 283630 . 2 186,1153 0,306 -chrXIV 282172 283788 HC_gene_7326_tx_15 21 + 282172 283788 . 1 1617 0 -chrXIV 282172 283788 HC_gene_7326_tx_16 1 + 282172 283788 . 2 829,705 0,912 -chrXIV 282174 283630 HC_gene_7326_tx_17 1 + 282174 283630 . 2 303,793 0,664 -chrXIV 282182 283630 HC_gene_7326_tx_18 1 + 282182 283630 . 2 107,1300 0,149 -chrXIV 282270 283466 HC_gene_7326_tx_19 4 + 282270 283466 . 1 1197 0 -chrXIV 282270 283630 HC_gene_7326_tx_20 21 + 282270 283630 . 1 1361 0 -chrXIV 282270 283788 HC_gene_7326_tx_21 1 + 282270 283788 . 1 1519 0 -chrXIV 282375 283466 HC_gene_7326_tx_22 4 + 282375 283466 . 1 1092 0 -chrXIV 282375 283630 HC_gene_7326_tx_23 57 + 282375 283630 . 1 1256 0 -chrXIV 282375 283630 HC_gene_7326_tx_24 1 + 282375 283630 . 2 42,1093 0,163 -chrXIV 282462 283466 HC_gene_7326_tx_25 14 + 282462 283466 . 1 1005 0 -chrXIV 282462 283630 HC_gene_7326_tx_26 1 + 282462 283630 . 2 237,859 0,310 -chrXIV 282462 283630 HC_gene_7326_tx_27 182 + 282462 283630 . 1 1169 0 -chrXIV 282462 283630 HC_gene_7326_tx_28 1 + 282462 283630 . 2 584,547 0,622 -chrXIV 282462 283630 HC_gene_7326_tx_29 1 + 282462 283630 . 2 498,602 0,567 -chrXIV 282462 283630 HC_gene_7326_tx_30 1 + 282462 283630 . 2 704,143 0,1026 -chrXIV 282462 283788 HC_gene_7326_tx_31 3 + 282462 283788 . 1 1327 0 -chrXIV 282668 283466 HC_gene_7326_tx_32 6 + 282668 283466 . 1 799 0 -chrXIV 282668 283630 HC_gene_7326_tx_33 183 + 282668 283630 . 1 963 0 -chrXIV 282668 283630 HC_gene_7326_tx_34 1 + 282668 283630 . 2 772,143 0,820 -chrXIV 282668 283630 HC_gene_7326_tx_35 1 + 282668 283630 . 2 220,655 0,308 -chrXIV 282668 283630 HC_gene_7326_tx_36 1 + 282668 283630 . 2 181,655 0,308 -chrXIV 282668 283630 HC_gene_7326_tx_37 1 + 282668 283630 . 2 772,112 0,851 -chrXIV 282668 283788 HC_gene_7326_tx_38 2 + 282668 283788 . 1 1121 0 -chrXIV 282962 283466 HC_gene_7326_tx_39 5 + 282962 283466 . 1 505 0 -chrXIV 282962 283630 HC_gene_7326_tx_40 154 + 282962 283630 . 1 669 0 -chrXIV 282962 283788 HC_gene_7326_tx_41 3 + 282962 283788 . 1 827 0 -chrXIV 283729 284345 LC_gene_7644_tx_1 1 - 283729 284345 . 1 617 0 -chrXIV 284060 284279 HC_gene_7327_tx_1 1 + 284060 284279 . 1 220 0 -chrXIV 284065 284279 HC_gene_7327_tx_2 2 + 284065 284279 . 1 215 0 -chrXIV 284065 286046 HC_gene_7328_tx_1 65 + 284065 286046 . 1 1982 0 -chrXIV 284065 286046 HC_gene_7328_tx_2 1 + 284065 286046 . 2 1771,160 0,1822 -chrXIV 284065 286122 HC_gene_7328_tx_3 22 + 284065 286122 . 1 2058 0 -chrXIV 284065 286122 HC_gene_7328_tx_4 1 + 284065 286122 . 2 1898,49 0,2009 -chrXIV 284065 286122 HC_gene_7328_tx_5 1 + 284065 286122 . 2 517,1249 0,809 -chrXIV 284255 286046 HC_gene_7328_tx_6 7 + 284255 286046 . 1 1792 0 -chrXIV 284255 286046 HC_gene_7328_tx_7 1 + 284255 286046 . 2 78,782 0,1010 -chrXIV 284255 286046 HC_gene_7328_tx_8 1 + 284255 286046 . 2 1087,655 0,1137 -chrXIV 284255 286122 HC_gene_7328_tx_9 6 + 284255 286122 . 1 1868 0 -chrXIV 284719 286046 HC_gene_7328_tx_10 7 + 284719 286046 . 1 1328 0 -chrXIV 285284 285983 LC_gene_7645_tx_1 1 - 285284 285983 . 1 700 0 -chrXIV 286250 287678 HC_gene_7329_tx_1 21 + 286250 287678 . 1 1429 0 -chrXIV 286769 287678 HC_gene_7329_tx_2 3 + 286769 287678 . 1 910 0 -chrXIV 287556 289147 LC_gene_7646_tx_1 1 - 287556 289147 . 1 1592 0 -chrXIV 287778 289452 HC_gene_7330_tx_1 8 + 287778 289452 . 1 1675 0 -chrXIV 287778 291984 HC_gene_7330_tx_2 2 + 287778 291984 . 1 4207 0 -chrXIV 289304 291984 HC_gene_7331_tx_1 24 + 289304 291984 . 1 2681 0 -chrXIV 289304 291984 HC_gene_7331_tx_2 1 + 289304 291984 . 2 969,1253 0,1428 -chrXIV 289304 291984 HC_gene_7331_tx_3 1 + 289304 291984 . 2 1107,1285 0,1396 -chrXIV 289304 291984 HC_gene_7331_tx_4 1 + 289304 291984 . 2 741,1880 0,801 -chrXIV 289304 292156 HC_gene_7331_tx_5 5 + 289304 292156 . 1 2853 0 -chrXIV 289925 291984 HC_gene_7331_tx_6 1 + 289925 291984 . 2 1161,779 0,1281 -chrXIV 289925 291984 HC_gene_7331_tx_7 3 + 289925 291984 . 1 2060 0 -chrXIV 289925 292156 HC_gene_7331_tx_8 3 + 289925 292156 . 1 2232 0 -chrXIV 292065 292767 HC_gene_7647_tx_1 77 - 292065 292767 . 1 703 0 -chrXIV 292510 293143 MC_gene_7332_tx_1 1 + 292510 293143 . 1 634 0 -chrXIV 293032 295518 HC_gene_7648_tx_1 1 - 293032 295518 . 1 2487 0 -chrXIV 293032 295714 HC_gene_7648_tx_2 10 - 293032 295714 . 1 2683 0 -chrXIV 293032 295714 HC_gene_7648_tx_3 1 - 293032 295714 . 2 1364,827 0,1856 -chrXIV 295650 297641 HC_gene_7649_tx_1 1 - 295650 297641 . 1 1992 0 -chrXIV 295858 296531 HC_gene_7649_tx_4 9 - 295858 296531 . 1 674 0 -chrXIV 295858 297641 HC_gene_7649_tx_2 33 - 295858 297641 . 1 1784 0 -chrXIV 295858 297641 HC_gene_7649_tx_3 1 - 295858 297641 . 2 761,971 0,813 -chrXIV 298265 299674 HC_gene_7333_tx_1 43 + 298265 299674 . 1 1410 0 -chrXIV 298265 299674 HC_gene_7333_tx_2 1 + 298265 299674 . 2 186,1108 0,302 -chrXIV 298491 299674 HC_gene_7333_tx_3 4 + 298491 299674 . 1 1184 0 -chrXIV 298812 299330 LC_gene_7650_tx_1 1 - 298812 299330 . 1 519 0 -chrXIV 299191 299674 HC_gene_7333_tx_4 5 + 299191 299674 . 1 484 0 -chrXIV 299356 300842 HC_gene_7651_tx_1 1 - 299356 300842 . 1 1487 0 -chrXIV 299562 299827 HC_gene_7651_tx_5 12 - 299562 299827 . 1 266 0 -chrXIV 299562 300030 HC_gene_7651_tx_6 23 - 299562 300030 . 1 469 0 -chrXIV 299562 300842 HC_gene_7651_tx_2 85 - 299562 300842 . 1 1281 0 -chrXIV 299562 300842 HC_gene_7651_tx_3 1 - 299562 300842 . 2 1045,129 0,1152 -chrXIV 299562 300842 HC_gene_7651_tx_4 1 - 299562 300842 . 2 138,908 0,373 -chrXIV 300844 301672 HC_gene_7652_tx_1 1 - 300844 301672 . 1 829 0 -chrXIV 301117 301949 LC_gene_7334_tx_1 1 + 301117 301949 . 1 833 0 -chrXIV 302662 303443 HC_gene_7335_tx_1 4 + 302662 303443 . 1 782 0 -chrXIV 302662 303444 HC_gene_7335_tx_2 94 + 302662 303444 . 1 783 0 -chrXIV 302662 303445 HC_gene_7335_tx_3 196 + 302662 303445 . 1 784 0 -chrXIV 302662 303446 HC_gene_7335_tx_4 164 + 302662 303446 . 1 785 0 -chrXIV 302662 303447 HC_gene_7335_tx_5 112 + 302662 303447 . 1 786 0 -chrXIV 302662 303448 HC_gene_7335_tx_6 332 + 302662 303448 . 1 787 0 -chrXIV 302662 303449 HC_gene_7335_tx_7 26 + 302662 303449 . 1 788 0 -chrXIV 302662 303450 HC_gene_7335_tx_8 11 + 302662 303450 . 1 789 0 -chrXIV 302662 303451 HC_gene_7335_tx_9 11 + 302662 303451 . 1 790 0 -chrXIV 302662 303452 HC_gene_7335_tx_10 22 + 302662 303452 . 1 791 0 -chrXIV 302662 303453 HC_gene_7335_tx_11 13 + 302662 303453 . 1 792 0 -chrXIV 302662 303454 HC_gene_7335_tx_12 25 + 302662 303454 . 1 793 0 -chrXIV 302662 303455 HC_gene_7335_tx_13 27 + 302662 303455 . 1 794 0 -chrXIV 302662 303456 HC_gene_7335_tx_14 6 + 302662 303456 . 1 795 0 -chrXIV 302662 303457 HC_gene_7335_tx_15 28 + 302662 303457 . 1 796 0 -chrXIV 302662 303458 HC_gene_7335_tx_16 7 + 302662 303458 . 1 797 0 -chrXIV 302662 303459 HC_gene_7335_tx_17 3 + 302662 303459 . 1 798 0 -chrXIV 302662 303460 HC_gene_7335_tx_18 13 + 302662 303460 . 1 799 0 -chrXIV 302662 303461 HC_gene_7335_tx_19 25 + 302662 303461 . 1 800 0 -chrXIV 302662 303462 HC_gene_7335_tx_20 59 + 302662 303462 . 1 801 0 -chrXIV 302662 303463 HC_gene_7335_tx_21 6 + 302662 303463 . 1 802 0 -chrXIV 302662 303464 HC_gene_7335_tx_22 21 + 302662 303464 . 1 803 0 -chrXIV 302662 303465 HC_gene_7335_tx_23 3 + 302662 303465 . 1 804 0 -chrXIV 302662 303466 HC_gene_7335_tx_24 1 + 302662 303466 . 1 805 0 -chrXIV 302662 303467 HC_gene_7335_tx_25 72 + 302662 303467 . 1 806 0 -chrXIV 302662 303468 HC_gene_7335_tx_26 51 + 302662 303468 . 1 807 0 -chrXIV 302662 303468 HC_gene_7335_tx_27 1 + 302662 303468 . 2 721,39 0,768 -chrXIV 302662 303469 HC_gene_7335_tx_28 35 + 302662 303469 . 1 808 0 -chrXIV 302662 303470 HC_gene_7335_tx_29 1 + 302662 303470 . 1 809 0 -chrXIV 302662 303471 HC_gene_7335_tx_30 4 + 302662 303471 . 1 810 0 -chrXIV 302662 303472 HC_gene_7335_tx_31 2 + 302662 303472 . 1 811 0 -chrXIV 302662 303473 HC_gene_7335_tx_32 3 + 302662 303473 . 1 812 0 -chrXIV 302662 303474 HC_gene_7335_tx_33 6 + 302662 303474 . 1 813 0 -chrXIV 302662 303477 HC_gene_7335_tx_34 1 + 302662 303477 . 1 816 0 -chrXIV 302662 303478 HC_gene_7335_tx_35 1 + 302662 303478 . 1 817 0 -chrXIV 302662 303479 HC_gene_7335_tx_36 11 + 302662 303479 . 1 818 0 -chrXIV 302662 303481 HC_gene_7335_tx_37 1 + 302662 303481 . 1 820 0 -chrXIV 302662 303485 HC_gene_7335_tx_38 2 + 302662 303485 . 1 824 0 -chrXIV 302662 303486 HC_gene_7335_tx_39 1 + 302662 303486 . 1 825 0 -chrXIV 302662 303489 HC_gene_7335_tx_40 1 + 302662 303489 . 1 828 0 -chrXIV 302662 303494 HC_gene_7335_tx_41 3 + 302662 303494 . 1 833 0 -chrXIV 302662 303495 HC_gene_7335_tx_42 5 + 302662 303495 . 1 834 0 -chrXIV 302662 303497 HC_gene_7335_tx_43 8 + 302662 303497 . 1 836 0 -chrXIV 302662 303500 HC_gene_7335_tx_44 2 + 302662 303500 . 1 839 0 -chrXIV 302662 303503 HC_gene_7335_tx_45 1 + 302662 303503 . 1 842 0 -chrXIV 302662 303505 HC_gene_7335_tx_46 1 + 302662 303505 . 1 844 0 -chrXIV 302662 303515 HC_gene_7335_tx_47 1 + 302662 303515 . 1 854 0 -chrXIV 302662 303518 HC_gene_7335_tx_48 3 + 302662 303518 . 1 857 0 -chrXIV 302662 303520 HC_gene_7335_tx_49 2 + 302662 303520 . 1 859 0 -chrXIV 302662 303521 HC_gene_7335_tx_50 1 + 302662 303521 . 1 860 0 -chrXIV 302662 303522 HC_gene_7335_tx_51 2 + 302662 303522 . 1 861 0 -chrXIV 302662 303524 HC_gene_7335_tx_52 3 + 302662 303524 . 1 863 0 -chrXIV 302662 303525 HC_gene_7335_tx_53 2 + 302662 303525 . 1 864 0 -chrXIV 302662 303526 HC_gene_7335_tx_54 3 + 302662 303526 . 1 865 0 -chrXIV 302662 303527 HC_gene_7335_tx_55 2 + 302662 303527 . 1 866 0 -chrXIV 302662 303528 HC_gene_7335_tx_56 1 + 302662 303528 . 1 867 0 -chrXIV 302662 303530 HC_gene_7335_tx_57 1 + 302662 303530 . 1 869 0 -chrXIV 302662 303533 HC_gene_7335_tx_58 4 + 302662 303533 . 1 872 0 -chrXIV 302662 303534 HC_gene_7335_tx_59 15 + 302662 303534 . 1 873 0 -chrXIV 302662 303535 HC_gene_7335_tx_60 5 + 302662 303535 . 1 874 0 -chrXIV 302662 303536 HC_gene_7335_tx_61 1 + 302662 303536 . 1 875 0 -chrXIV 302662 303541 HC_gene_7335_tx_62 1 + 302662 303541 . 1 880 0 -chrXIV 302662 303542 HC_gene_7335_tx_63 1 + 302662 303542 . 1 881 0 -chrXIV 302662 303545 HC_gene_7335_tx_64 2 + 302662 303545 . 1 884 0 -chrXIV 302662 303546 HC_gene_7335_tx_65 1 + 302662 303546 . 1 885 0 -chrXIV 302662 303548 HC_gene_7335_tx_66 1 + 302662 303548 . 1 887 0 -chrXIV 302662 303553 HC_gene_7335_tx_67 6 + 302662 303553 . 1 892 0 -chrXIV 302662 303631 HC_gene_7335_tx_68 5 + 302662 303631 . 1 970 0 -chrXIV 302662 303631 HC_gene_7335_tx_69 1 + 302662 303631 . 2 709,168 0,802 -chrXIV 302816 303444 HC_gene_7335_tx_70 9 + 302816 303444 . 1 629 0 -chrXIV 302816 303445 HC_gene_7335_tx_71 16 + 302816 303445 . 1 630 0 -chrXIV 302816 303446 HC_gene_7335_tx_72 24 + 302816 303446 . 1 631 0 -chrXIV 302816 303447 HC_gene_7335_tx_73 14 + 302816 303447 . 1 632 0 -chrXIV 302816 303448 HC_gene_7335_tx_74 41 + 302816 303448 . 1 633 0 -chrXIV 302816 303449 HC_gene_7335_tx_75 1 + 302816 303449 . 1 634 0 -chrXIV 302816 303450 HC_gene_7335_tx_76 4 + 302816 303450 . 1 635 0 -chrXIV 302816 303451 HC_gene_7335_tx_77 1 + 302816 303451 . 1 636 0 -chrXIV 302816 303452 HC_gene_7335_tx_78 2 + 302816 303452 . 1 637 0 -chrXIV 302816 303454 HC_gene_7335_tx_79 4 + 302816 303454 . 1 639 0 -chrXIV 302816 303455 HC_gene_7335_tx_80 4 + 302816 303455 . 1 640 0 -chrXIV 302816 303456 HC_gene_7335_tx_81 1 + 302816 303456 . 1 641 0 -chrXIV 302816 303457 HC_gene_7335_tx_82 3 + 302816 303457 . 1 642 0 -chrXIV 302816 303459 HC_gene_7335_tx_83 1 + 302816 303459 . 1 644 0 -chrXIV 302816 303460 HC_gene_7335_tx_84 1 + 302816 303460 . 1 645 0 -chrXIV 302816 303461 HC_gene_7335_tx_85 3 + 302816 303461 . 1 646 0 -chrXIV 302816 303462 HC_gene_7335_tx_86 12 + 302816 303462 . 1 647 0 -chrXIV 302816 303463 HC_gene_7335_tx_87 1 + 302816 303463 . 1 648 0 -chrXIV 302816 303464 HC_gene_7335_tx_88 3 + 302816 303464 . 1 649 0 -chrXIV 302816 303465 HC_gene_7335_tx_89 1 + 302816 303465 . 1 650 0 -chrXIV 302816 303467 HC_gene_7335_tx_90 4 + 302816 303467 . 1 652 0 -chrXIV 302816 303467 HC_gene_7335_tx_91 1 + 302816 303467 . 2 71,351 0,301 -chrXIV 302816 303468 HC_gene_7335_tx_92 7 + 302816 303468 . 1 653 0 -chrXIV 302816 303469 HC_gene_7335_tx_93 4 + 302816 303469 . 1 654 0 -chrXIV 302816 303474 HC_gene_7335_tx_94 1 + 302816 303474 . 1 659 0 -chrXIV 302816 303485 HC_gene_7335_tx_95 1 + 302816 303485 . 1 670 0 -chrXIV 302816 303514 HC_gene_7335_tx_96 1 + 302816 303514 . 1 699 0 -chrXIV 302816 303519 HC_gene_7335_tx_97 1 + 302816 303519 . 1 704 0 -chrXIV 302816 303520 HC_gene_7335_tx_98 2 + 302816 303520 . 1 705 0 -chrXIV 302816 303526 HC_gene_7335_tx_99 1 + 302816 303526 . 1 711 0 -chrXIV 302816 303528 HC_gene_7335_tx_100 1 + 302816 303528 . 1 713 0 -chrXIV 302816 303534 HC_gene_7335_tx_101 1 + 302816 303534 . 1 719 0 -chrXIV 302816 303536 HC_gene_7335_tx_102 1 + 302816 303536 . 1 721 0 -chrXIV 302816 303546 HC_gene_7335_tx_103 1 + 302816 303546 . 1 731 0 -chrXIV 302816 303548 HC_gene_7335_tx_104 2 + 302816 303548 . 1 733 0 -chrXIV 302816 303550 HC_gene_7335_tx_105 1 + 302816 303550 . 1 735 0 -chrXIV 303013 303444 HC_gene_7335_tx_106 11 + 303013 303444 . 1 432 0 -chrXIV 303013 303445 HC_gene_7335_tx_107 23 + 303013 303445 . 1 433 0 -chrXIV 303013 303446 HC_gene_7335_tx_108 36 + 303013 303446 . 1 434 0 -chrXIV 303013 303447 HC_gene_7335_tx_109 17 + 303013 303447 . 1 435 0 -chrXIV 303013 303448 HC_gene_7335_tx_110 41 + 303013 303448 . 1 436 0 -chrXIV 303013 303449 HC_gene_7335_tx_111 7 + 303013 303449 . 1 437 0 -chrXIV 303013 303450 HC_gene_7335_tx_112 1 + 303013 303450 . 1 438 0 -chrXIV 303013 303451 HC_gene_7335_tx_113 2 + 303013 303451 . 1 439 0 -chrXIV 303013 303452 HC_gene_7335_tx_114 4 + 303013 303452 . 1 440 0 -chrXIV 303013 303453 HC_gene_7335_tx_115 3 + 303013 303453 . 1 441 0 -chrXIV 303013 303454 HC_gene_7335_tx_116 6 + 303013 303454 . 1 442 0 -chrXIV 303013 303455 HC_gene_7335_tx_117 7 + 303013 303455 . 1 443 0 -chrXIV 303013 303458 HC_gene_7335_tx_118 1 + 303013 303458 . 1 446 0 -chrXIV 303013 303460 HC_gene_7335_tx_119 3 + 303013 303460 . 1 448 0 -chrXIV 303013 303461 HC_gene_7335_tx_120 4 + 303013 303461 . 1 449 0 -chrXIV 303013 303462 HC_gene_7335_tx_121 6 + 303013 303462 . 1 450 0 -chrXIV 303013 303464 HC_gene_7335_tx_122 2 + 303013 303464 . 1 452 0 -chrXIV 303013 303466 HC_gene_7335_tx_123 2 + 303013 303466 . 1 454 0 -chrXIV 303013 303467 HC_gene_7335_tx_124 17 + 303013 303467 . 1 455 0 -chrXIV 303013 303468 HC_gene_7335_tx_125 10 + 303013 303468 . 1 456 0 -chrXIV 303013 303469 HC_gene_7335_tx_126 12 + 303013 303469 . 1 457 0 -chrXIV 303013 303474 HC_gene_7335_tx_127 1 + 303013 303474 . 1 462 0 -chrXIV 303013 303479 HC_gene_7335_tx_128 2 + 303013 303479 . 1 467 0 -chrXIV 303013 303481 HC_gene_7335_tx_129 1 + 303013 303481 . 1 469 0 -chrXIV 303013 303485 HC_gene_7335_tx_130 1 + 303013 303485 . 1 473 0 -chrXIV 303013 303486 HC_gene_7335_tx_131 1 + 303013 303486 . 1 474 0 -chrXIV 303013 303495 HC_gene_7335_tx_132 1 + 303013 303495 . 1 483 0 -chrXIV 303013 303505 HC_gene_7335_tx_133 1 + 303013 303505 . 1 493 0 -chrXIV 303013 303520 HC_gene_7335_tx_134 1 + 303013 303520 . 1 508 0 -chrXIV 303013 303521 HC_gene_7335_tx_135 1 + 303013 303521 . 1 509 0 -chrXIV 303013 303525 HC_gene_7335_tx_136 1 + 303013 303525 . 1 513 0 -chrXIV 303013 303533 HC_gene_7335_tx_137 1 + 303013 303533 . 1 521 0 -chrXIV 303013 303534 HC_gene_7335_tx_138 4 + 303013 303534 . 1 522 0 -chrXIV 303013 303546 HC_gene_7335_tx_139 1 + 303013 303546 . 1 534 0 -chrXIV 303070 303444 HC_gene_7335_tx_140 2 + 303070 303444 . 1 375 0 -chrXIV 303070 303445 HC_gene_7335_tx_141 2 + 303070 303445 . 1 376 0 -chrXIV 303070 303446 HC_gene_7335_tx_142 6 + 303070 303446 . 1 377 0 -chrXIV 303070 303447 HC_gene_7335_tx_143 1 + 303070 303447 . 1 378 0 -chrXIV 303070 303448 HC_gene_7335_tx_144 8 + 303070 303448 . 1 379 0 -chrXIV 303070 303450 HC_gene_7335_tx_145 1 + 303070 303450 . 1 381 0 -chrXIV 303070 303452 HC_gene_7335_tx_146 1 + 303070 303452 . 1 383 0 -chrXIV 303070 303455 HC_gene_7335_tx_147 1 + 303070 303455 . 1 386 0 -chrXIV 303070 303461 HC_gene_7335_tx_148 1 + 303070 303461 . 1 392 0 -chrXIV 303070 303462 HC_gene_7335_tx_149 2 + 303070 303462 . 1 393 0 -chrXIV 303070 303468 HC_gene_7335_tx_150 2 + 303070 303468 . 1 399 0 -chrXIV 303070 303485 HC_gene_7335_tx_151 1 + 303070 303485 . 1 416 0 -chrXIV 303070 303503 HC_gene_7335_tx_152 1 + 303070 303503 . 1 434 0 -chrXIV 303070 303528 HC_gene_7335_tx_153 1 + 303070 303528 . 1 459 0 -chrXIV 303142 303444 HC_gene_7335_tx_154 3 + 303142 303444 . 1 303 0 -chrXIV 303142 303445 HC_gene_7335_tx_155 26 + 303142 303445 . 1 304 0 -chrXIV 303142 303446 HC_gene_7335_tx_156 57 + 303142 303446 . 1 305 0 -chrXIV 303142 303447 HC_gene_7335_tx_157 15 + 303142 303447 . 1 306 0 -chrXIV 303142 303448 HC_gene_7335_tx_158 30 + 303142 303448 . 1 307 0 -chrXIV 303142 303449 HC_gene_7335_tx_159 6 + 303142 303449 . 1 308 0 -chrXIV 303142 303450 HC_gene_7335_tx_160 1 + 303142 303450 . 1 309 0 -chrXIV 303142 303452 HC_gene_7335_tx_161 3 + 303142 303452 . 1 311 0 -chrXIV 303142 303453 HC_gene_7335_tx_162 3 + 303142 303453 . 1 312 0 -chrXIV 303142 303454 HC_gene_7335_tx_163 3 + 303142 303454 . 1 313 0 -chrXIV 303142 303455 HC_gene_7335_tx_164 1 + 303142 303455 . 1 314 0 -chrXIV 303142 303456 HC_gene_7335_tx_165 1 + 303142 303456 . 1 315 0 -chrXIV 303142 303457 HC_gene_7335_tx_166 2 + 303142 303457 . 1 316 0 -chrXIV 303142 303458 HC_gene_7335_tx_167 1 + 303142 303458 . 1 317 0 -chrXIV 303142 303460 HC_gene_7335_tx_168 2 + 303142 303460 . 1 319 0 -chrXIV 303142 303461 HC_gene_7335_tx_169 3 + 303142 303461 . 1 320 0 -chrXIV 303142 303462 HC_gene_7335_tx_170 6 + 303142 303462 . 1 321 0 -chrXIV 303142 303463 HC_gene_7335_tx_171 1 + 303142 303463 . 1 322 0 -chrXIV 303142 303464 HC_gene_7335_tx_172 2 + 303142 303464 . 1 323 0 -chrXIV 303142 303465 HC_gene_7335_tx_173 1 + 303142 303465 . 1 324 0 -chrXIV 303142 303467 HC_gene_7335_tx_174 14 + 303142 303467 . 1 326 0 -chrXIV 303142 303468 HC_gene_7335_tx_175 7 + 303142 303468 . 1 327 0 -chrXIV 303142 303469 HC_gene_7335_tx_176 16 + 303142 303469 . 1 328 0 -chrXIV 303142 303472 HC_gene_7335_tx_177 1 + 303142 303472 . 1 331 0 -chrXIV 303142 303485 HC_gene_7335_tx_178 1 + 303142 303485 . 1 344 0 -chrXIV 303142 303524 HC_gene_7335_tx_179 1 + 303142 303524 . 1 383 0 -chrXIV 303142 303541 HC_gene_7335_tx_180 1 + 303142 303541 . 1 400 0 -chrXIV 303142 303553 HC_gene_7335_tx_181 1 + 303142 303553 . 1 412 0 -chrXIV 303220 303444 HC_gene_7335_tx_182 5 + 303220 303444 . 1 225 0 -chrXIV 303220 303445 HC_gene_7335_tx_183 11 + 303220 303445 . 1 226 0 -chrXIV 303220 303446 HC_gene_7335_tx_184 39 + 303220 303446 . 1 227 0 -chrXIV 303220 303447 HC_gene_7335_tx_185 11 + 303220 303447 . 1 228 0 -chrXIV 303220 303448 HC_gene_7335_tx_186 19 + 303220 303448 . 1 229 0 -chrXIV 303220 303449 HC_gene_7335_tx_187 1 + 303220 303449 . 1 230 0 -chrXIV 303220 303450 HC_gene_7335_tx_188 1 + 303220 303450 . 1 231 0 -chrXIV 303220 303452 HC_gene_7335_tx_189 1 + 303220 303452 . 1 233 0 -chrXIV 303220 303454 HC_gene_7335_tx_190 3 + 303220 303454 . 1 235 0 -chrXIV 303220 303455 HC_gene_7335_tx_191 1 + 303220 303455 . 1 236 0 -chrXIV 303220 303457 HC_gene_7335_tx_192 2 + 303220 303457 . 1 238 0 -chrXIV 303220 303458 HC_gene_7335_tx_193 2 + 303220 303458 . 1 239 0 -chrXIV 303220 303459 HC_gene_7335_tx_194 1 + 303220 303459 . 1 240 0 -chrXIV 303220 303460 HC_gene_7335_tx_195 1 + 303220 303460 . 1 241 0 -chrXIV 303220 303461 HC_gene_7335_tx_196 4 + 303220 303461 . 1 242 0 -chrXIV 303220 303462 HC_gene_7335_tx_197 5 + 303220 303462 . 1 243 0 -chrXIV 303220 303463 HC_gene_7335_tx_198 1 + 303220 303463 . 1 244 0 -chrXIV 303220 303464 HC_gene_7335_tx_199 2 + 303220 303464 . 1 245 0 -chrXIV 303220 303466 HC_gene_7335_tx_200 1 + 303220 303466 . 1 247 0 -chrXIV 303220 303467 HC_gene_7335_tx_201 2 + 303220 303467 . 1 248 0 -chrXIV 303220 303468 HC_gene_7335_tx_202 4 + 303220 303468 . 1 249 0 -chrXIV 303220 303469 HC_gene_7335_tx_203 10 + 303220 303469 . 1 250 0 -chrXIV 303220 303526 HC_gene_7335_tx_204 3 + 303220 303526 . 1 307 0 -chrXIV 303220 303528 HC_gene_7335_tx_205 1 + 303220 303528 . 1 309 0 -chrXIV 303220 303534 HC_gene_7335_tx_206 2 + 303220 303534 . 1 315 0 -chrXIV 303220 303536 HC_gene_7335_tx_207 1 + 303220 303536 . 1 317 0 -chrXIV 303384 304059 HC_gene_7653_tx_1 3 - 303384 304059 . 1 676 0 -chrXIV 303384 304665 HC_gene_7653_tx_6 16 - 303384 304665 . 1 1282 0 -chrXIV 303384 304665 HC_gene_7653_tx_7 1 - 303384 304665 . 2 1032,86 0,1196 -chrXIV 303478 304446 HC_gene_7653_tx_8 1 - 303478 304446 . 1 969 0 -chrXIV 303486 304059 HC_gene_7653_tx_2 1 - 303486 304059 . 1 574 0 -chrXIV 303496 304059 HC_gene_7653_tx_3 1 - 303496 304059 . 1 564 0 -chrXIV 303496 304665 HC_gene_7653_tx_9 2 - 303496 304665 . 1 1170 0 -chrXIV 303497 304059 HC_gene_7653_tx_4 1 - 303497 304059 . 1 563 0 -chrXIV 303497 304665 HC_gene_7653_tx_10 2 - 303497 304665 . 1 1169 0 -chrXIV 303501 304446 HC_gene_7653_tx_11 1 - 303501 304446 . 1 946 0 -chrXIV 303501 304665 HC_gene_7653_tx_12 2 - 303501 304665 . 1 1165 0 -chrXIV 303506 304665 HC_gene_7653_tx_13 1 - 303506 304665 . 2 874,111 0,1049 -chrXIV 303506 304665 HC_gene_7653_tx_14 1 - 303506 304665 . 1 1160 0 -chrXIV 303507 304665 HC_gene_7653_tx_15 2 - 303507 304665 . 1 1159 0 -chrXIV 303508 304665 HC_gene_7653_tx_16 1 - 303508 304665 . 1 1158 0 -chrXIV 303510 304665 HC_gene_7653_tx_17 1 - 303510 304665 . 1 1156 0 -chrXIV 303511 304665 HC_gene_7653_tx_18 1 - 303511 304665 . 1 1155 0 -chrXIV 303514 304665 HC_gene_7653_tx_19 1 - 303514 304665 . 1 1152 0 -chrXIV 303516 304665 HC_gene_7653_tx_20 3 - 303516 304665 . 1 1150 0 -chrXIV 303517 304446 HC_gene_7653_tx_21 1 - 303517 304446 . 1 930 0 -chrXIV 303519 304446 HC_gene_7653_tx_22 1 - 303519 304446 . 1 928 0 -chrXIV 303519 304665 HC_gene_7653_tx_23 1 - 303519 304665 . 1 1147 0 -chrXIV 303520 304059 HC_gene_7653_tx_5 1 - 303520 304059 . 1 540 0 -chrXIV 303520 304665 HC_gene_7653_tx_24 1 - 303520 304665 . 1 1146 0 -chrXIV 303521 304665 HC_gene_7653_tx_25 1 - 303521 304665 . 1 1145 0 -chrXIV 303522 304665 HC_gene_7653_tx_26 1 - 303522 304665 . 1 1144 0 -chrXIV 303523 304446 HC_gene_7653_tx_27 1 - 303523 304446 . 1 924 0 -chrXIV 303524 304665 HC_gene_7653_tx_28 1 - 303524 304665 . 1 1142 0 -chrXIV 303525 304665 HC_gene_7653_tx_29 2 - 303525 304665 . 1 1141 0 -chrXIV 303526 304665 HC_gene_7653_tx_30 3 - 303526 304665 . 1 1140 0 -chrXIV 303527 304446 HC_gene_7653_tx_31 2 - 303527 304446 . 1 920 0 -chrXIV 303527 304665 HC_gene_7653_tx_32 1 - 303527 304665 . 1 1139 0 -chrXIV 303528 304665 HC_gene_7653_tx_33 1 - 303528 304665 . 1 1138 0 -chrXIV 304056 304526 LC_gene_7336_tx_1 1 + 304056 304526 . 1 471 0 -chrXIV 304818 306953 HC_gene_7654_tx_1 1 - 304818 306953 . 1 2136 0 -chrXIV 304818 307160 HC_gene_7654_tx_2 12 - 304818 307160 . 1 2343 0 -chrXIV 307187 308320 HC_gene_7655_tx_1 1 - 307187 308320 . 1 1134 0 -chrXIV 307288 308062 HC_gene_7655_tx_7 13 - 307288 308062 . 1 775 0 -chrXIV 307288 308320 HC_gene_7655_tx_2 23 - 307288 308320 . 1 1033 0 -chrXIV 307288 308437 HC_gene_7655_tx_3 17 - 307288 308437 . 1 1150 0 -chrXIV 307288 308543 HC_gene_7655_tx_4 1 - 307288 308543 . 1 1256 0 -chrXIV 307288 308648 HC_gene_7655_tx_5 99 - 307288 308648 . 1 1361 0 -chrXIV 307288 308648 HC_gene_7655_tx_6 1 - 307288 308648 . 2 525,723 0,638 -chrXIV 307556 307979 LC_gene_7337_tx_1 1 + 307556 307979 . 1 424 0 -chrXIV 308859 309307 HC_gene_7656_tx_1 20 - 308859 309307 . 1 449 0 -chrXIV 308859 309406 HC_gene_7656_tx_2 12 - 308859 309406 . 1 548 0 -chrXIV 308859 309481 HC_gene_7656_tx_3 27 - 308859 309481 . 1 623 0 -chrXIV 308859 309626 HC_gene_7656_tx_4 19 - 308859 309626 . 1 768 0 -chrXIV 308859 309815 HC_gene_7656_tx_5 13 - 308859 309815 . 1 957 0 -chrXIV 308859 310098 HC_gene_7656_tx_6 87 - 308859 310098 . 1 1240 0 -chrXIV 309383 309758 LC_gene_7338_tx_1 1 + 309383 309758 . 1 376 0 -chrXIV 315444 316201 HC_gene_7339_tx_1 1 + 315444 316201 . 1 758 0 -chrXIV 316057 317202 HC_gene_7657_tx_1 2 - 316057 317202 . 1 1146 0 -chrXIV 316057 317632 HC_gene_7657_tx_2 4 - 316057 317632 . 1 1576 0 -chrXIV 316057 317778 HC_gene_7657_tx_3 35 - 316057 317778 . 1 1722 0 -chrXIV 316057 317778 HC_gene_7657_tx_4 2 - 316057 317778 . 2 664,948 0,774 -chrXIV 316057 317778 HC_gene_7657_tx_5 1 - 316057 317778 . 2 693,948 0,774 -chrXIV 316057 317778 HC_gene_7657_tx_6 1 - 316057 317778 . 2 714,962 0,760 -chrXIV 316057 317778 HC_gene_7657_tx_7 1 - 316057 317778 . 2 1358,300 0,1422 -chrXIV 317784 318851 HC_gene_7658_tx_1 1 - 317784 318851 . 1 1068 0 -chrXIV 317871 318405 HC_gene_7658_tx_4 5 - 317871 318405 . 1 535 0 -chrXIV 317871 318504 HC_gene_7658_tx_5 6 - 317871 318504 . 1 634 0 -chrXIV 317871 318851 HC_gene_7658_tx_2 53 - 317871 318851 . 1 981 0 -chrXIV 317981 318405 HC_gene_7658_tx_6 1 - 317981 318405 . 1 425 0 -chrXIV 317981 318851 HC_gene_7658_tx_3 3 - 317981 318851 . 1 871 0 -chrXIV 317996 319315 HC_gene_7340_tx_1 2 + 317996 319315 . 1 1320 0 -chrXIV 318650 319315 HC_gene_7340_tx_2 3 + 318650 319315 . 1 666 0 -chrXIV 318984 319315 HC_gene_7340_tx_3 8 + 318984 319315 . 1 332 0 -chrXIV 318984 319594 HC_gene_7340_tx_4 1 + 318984 319594 . 1 611 0 -chrXIV 319206 320360 HC_gene_7659_tx_1 3 - 319206 320360 . 1 1155 0 -chrXIV 319206 321263 HC_gene_7659_tx_3 2 - 319206 321263 . 1 2058 0 -chrXIV 319206 321716 HC_gene_7659_tx_4 19 - 319206 321716 . 1 2511 0 -chrXIV 319206 321716 HC_gene_7659_tx_5 1 - 319206 321716 . 2 2057,197 0,2314 -chrXIV 319342 320360 HC_gene_7659_tx_2 2 - 319342 320360 . 1 1019 0 -chrXIV 319342 321263 HC_gene_7659_tx_6 1 - 319342 321263 . 1 1922 0 -chrXIV 321908 322262 MC_gene_7341_tx_1 1 + 321908 322262 . 1 355 0 -chrXIV 322127 322626 HC_gene_7660_tx_1 11 - 322127 322626 . 1 500 0 -chrXIV 322127 323087 HC_gene_7660_tx_2 3 - 322127 323087 . 1 961 0 -chrXIV 322127 323272 HC_gene_7660_tx_3 5 - 322127 323272 . 1 1146 0 -chrXIV 322127 323453 HC_gene_7660_tx_4 4 - 322127 323453 . 1 1327 0 -chrXIV 322127 323576 HC_gene_7660_tx_5 41 - 322127 323576 . 1 1450 0 -chrXIV 322127 323576 HC_gene_7660_tx_6 1 - 322127 323576 . 2 574,819 0,631 -chrXIV 322127 323576 HC_gene_7660_tx_7 1 - 322127 323576 . 2 565,807 0,643 -chrXIV 322127 323576 HC_gene_7660_tx_8 1 - 322127 323576 . 2 718,668 0,782 -chrXIV 322127 323576 HC_gene_7660_tx_9 1 - 322127 323576 . 2 565,788 0,662 -chrXIV 322127 323576 HC_gene_7660_tx_10 1 - 322127 323576 . 2 376,1020 0,430 -chrXIV 322127 323576 HC_gene_7660_tx_11 1 - 322127 323576 . 2 578,807 0,643 -chrXIV 322127 323576 HC_gene_7660_tx_12 1 - 322127 323576 . 2 578,758 0,692 -chrXIV 323758 325205 HC_gene_7342_tx_1 10 + 323758 325205 . 1 1448 0 -chrXIV 323758 325274 HC_gene_7342_tx_2 3 + 323758 325274 . 1 1517 0 -chrXIV 324914 326498 HC_gene_7661_tx_1 3 - 324914 326498 . 1 1585 0 -chrXIV 325124 326498 HC_gene_7661_tx_2 21 - 325124 326498 . 1 1375 0 -chrXIV 325124 326498 HC_gene_7661_tx_3 1 - 325124 326498 . 2 363,958 0,417 -chrXIV 326236 326774 MC_gene_7343_tx_1 1 + 326236 326774 . 1 539 0 -chrXIV 326604 329271 HC_gene_7662_tx_1 6 - 326604 329271 . 1 2668 0 -chrXIV 326604 329678 HC_gene_7662_tx_2 1 - 326604 329678 . 1 3075 0 -chrXIV 326604 330139 HC_gene_7662_tx_3 3 - 326604 330139 . 1 3536 0 -chrXIV 330250 330828 HC_gene_7663_tx_1 7 - 330250 330828 . 1 579 0 -chrXIV 330311 330825 HC_gene_7344_tx_1 4 + 330311 330825 . 1 515 0 -chrXIV 330311 330984 HC_gene_7344_tx_2 28 + 330311 330984 . 1 674 0 -chrXIV 330968 332162 MC_gene_7664_tx_1 1 - 330968 332162 . 1 1195 0 -chrXIV 331304 332250 HC_gene_7345_tx_1 22 + 331304 332250 . 2 22,413 0,534 -chrXIV 331304 332250 HC_gene_7345_tx_2 64 + 331304 332250 . 1 947 0 -chrXIV 331823 332250 HC_gene_7345_tx_3 2408 + 331823 332250 . 1 428 0 -chrXIV 332425 335272 HC_gene_7346_tx_1 1 + 332425 335272 . 1 2848 0 -chrXIV 332425 335276 HC_gene_7346_tx_2 1 + 332425 335276 . 1 2852 0 -chrXIV 332425 335320 HC_gene_7346_tx_3 1 + 332425 335320 . 1 2896 0 -chrXIV 332627 335290 HC_gene_7346_tx_4 1 + 332627 335290 . 1 2664 0 -chrXIV 332995 335256 HC_gene_7346_tx_5 1 + 332995 335256 . 1 2262 0 -chrXIV 332995 335276 HC_gene_7346_tx_6 1 + 332995 335276 . 1 2282 0 -chrXIV 333149 335260 HC_gene_7346_tx_7 1 + 333149 335260 . 1 2112 0 -chrXIV 335166 335499 HC_gene_7665_tx_1 26 - 335166 335499 . 1 334 0 -chrXIV 335166 335993 HC_gene_7665_tx_2 4 - 335166 335993 . 1 828 0 -chrXIV 335166 336068 HC_gene_7665_tx_3 2 - 335166 336068 . 1 903 0 -chrXIV 335166 336220 HC_gene_7665_tx_4 5 - 335166 336220 . 1 1055 0 -chrXIV 335166 337760 HC_gene_7665_tx_5 6 - 335166 337760 . 1 2595 0 -chrXIV 335166 339369 HC_gene_7665_tx_6 1 - 335166 339369 . 1 4204 0 -chrXIV 335299 336565 HC_gene_7347_tx_1 1 + 335299 336565 . 1 1267 0 -chrXIV 335299 337840 HC_gene_7347_tx_3 4 + 335299 337840 . 1 2542 0 -chrXIV 335394 336565 HC_gene_7347_tx_2 2 + 335394 336565 . 1 1172 0 -chrXIV 336489 337840 HC_gene_7347_tx_4 568 + 336489 337840 . 1 1352 0 -chrXIV 336489 337840 HC_gene_7347_tx_5 1 + 336489 337840 . 2 768,502 0,850 -chrXIV 336489 337840 HC_gene_7347_tx_6 1 + 336489 337840 . 2 61,797 0,555 -chrXIV 336489 337840 HC_gene_7347_tx_7 1 + 336489 337840 . 2 225,1065 0,287 -chrXIV 336489 337840 HC_gene_7347_tx_8 1 + 336489 337840 . 2 1100,112 0,1240 -chrXIV 336489 337840 HC_gene_7347_tx_9 1 + 336489 337840 . 2 465,775 0,577 -chrXIV 336489 337840 HC_gene_7347_tx_10 1 + 336489 337840 . 2 79,878 0,474 -chrXIV 336489 337840 HC_gene_7347_tx_11 1 + 336489 337840 . 2 616,676 0,676 -chrXIV 336489 337840 HC_gene_7347_tx_12 1 + 336489 337840 . 2 78,732 0,620 -chrXIV 336489 337840 HC_gene_7347_tx_13 1 + 336489 337840 . 2 175,1117 0,235 -chrXIV 336489 337840 HC_gene_7347_tx_14 1 + 336489 337840 . 2 870,321 0,1031 -chrXIV 336489 337840 HC_gene_7347_tx_15 1 + 336489 337840 . 2 859,379 0,973 -chrXIV 336489 337840 HC_gene_7347_tx_16 1 + 336489 337840 . 2 573,713 0,639 -chrXIV 336489 337840 HC_gene_7347_tx_17 1 + 336489 337840 . 2 118,963 0,389 -chrXIV 336493 337760 HC_gene_7665_tx_7 3 - 336493 337760 . 1 1268 0 -chrXIV 336635 337840 HC_gene_7347_tx_18 29 + 336635 337840 . 1 1206 0 -chrXIV 336688 337840 HC_gene_7347_tx_19 84 + 336688 337840 . 1 1153 0 -chrXIV 336688 337840 HC_gene_7347_tx_20 1 + 336688 337840 . 2 41,878 0,275 -chrXIV 336688 337840 HC_gene_7347_tx_21 1 + 336688 337840 . 2 56,973 0,180 -chrXIV 336688 337840 HC_gene_7347_tx_22 1 + 336688 337840 . 2 164,894 0,259 -chrXIV 336688 337840 HC_gene_7347_tx_23 1 + 336688 337840 . 2 317,775 0,378 -chrXIV 336784 337840 HC_gene_7347_tx_24 90 + 336784 337840 . 1 1057 0 -chrXIV 336784 339185 HC_gene_7347_tx_26 1 + 336784 339185 . 1 2402 0 -chrXIV 336930 337840 HC_gene_7347_tx_25 85 + 336930 337840 . 1 911 0 -chrXIV 337151 337840 HC_gene_7347_tx_27 73 + 337151 337840 . 1 690 0 -chrXIV 337325 337840 HC_gene_7347_tx_28 68 + 337325 337840 . 1 516 0 -chrXIV 337511 337840 HC_gene_7347_tx_29 126 + 337511 337840 . 1 330 0 -chrXIV 337511 338091 HC_gene_7347_tx_30 1 + 337511 338091 . 1 581 0 -chrXIV 337684 339369 HC_gene_7665_tx_8 1 - 337684 339369 . 1 1686 0 -chrXIV 337929 339249 HC_gene_7665_tx_9 1 - 337929 339249 . 1 1321 0 -chrXIV 337929 339369 HC_gene_7665_tx_10 2 - 337929 339369 . 1 1441 0 -chrXIV 337995 339185 HC_gene_7347_tx_31 5 + 337995 339185 . 1 1191 0 -chrXIV 338016 339249 HC_gene_7665_tx_11 2 - 338016 339249 . 1 1234 0 -chrXIV 338016 339369 HC_gene_7665_tx_12 12 - 338016 339369 . 1 1354 0 -chrXIV 338016 339369 HC_gene_7665_tx_13 1 - 338016 339369 . 2 915,155 0,1199 -chrXIV 338274 339369 HC_gene_7665_tx_14 1 - 338274 339369 . 1 1096 0 -chrXIV 339575 340942 HC_gene_7348_tx_1 34 + 339575 340942 . 1 1368 0 -chrXIV 339575 340942 HC_gene_7348_tx_2 1 + 339575 340942 . 2 89,1183 0,185 -chrXIV 339575 340942 HC_gene_7348_tx_3 1 + 339575 340942 . 2 1035,253 0,1115 -chrXIV 339675 340942 HC_gene_7348_tx_4 1 + 339675 340942 . 1 1268 0 -chrXIV 339733 340942 HC_gene_7348_tx_5 5 + 339733 340942 . 1 1210 0 -chrXIV 340327 340942 HC_gene_7348_tx_6 148 + 340327 340942 . 1 616 0 -chrXIV 340327 341163 HC_gene_7348_tx_7 2 + 340327 341163 . 1 837 0 -chrXIV 340516 340942 HC_gene_7348_tx_8 29 + 340516 340942 . 1 427 0 -chrXIV 340856 342140 HC_gene_7666_tx_1 2 - 340856 342140 . 1 1285 0 -chrXIV 341003 341486 HC_gene_7666_tx_4 15 - 341003 341486 . 1 484 0 -chrXIV 341003 341752 HC_gene_7666_tx_5 9 - 341003 341752 . 1 750 0 -chrXIV 341003 342003 HC_gene_7666_tx_2 12 - 341003 342003 . 1 1001 0 -chrXIV 341003 342140 HC_gene_7666_tx_3 105 - 341003 342140 . 1 1138 0 -chrXIV 342400 343343 HC_gene_7349_tx_1 15 + 342400 343343 . 1 944 0 -chrXIV 342400 343512 HC_gene_7349_tx_2 33 + 342400 343512 . 1 1113 0 -chrXIV 342524 343343 HC_gene_7349_tx_3 4 + 342524 343343 . 1 820 0 -chrXIV 342524 343512 HC_gene_7349_tx_4 4 + 342524 343512 . 1 989 0 -chrXIV 342670 343343 HC_gene_7349_tx_5 4 + 342670 343343 . 1 674 0 -chrXIV 342670 343512 HC_gene_7349_tx_6 6 + 342670 343512 . 1 843 0 -chrXIV 343131 343343 HC_gene_7349_tx_7 1 + 343131 343343 . 1 213 0 -chrXIV 343131 343512 HC_gene_7349_tx_8 7 + 343131 343512 . 1 382 0 -chrXIV 343227 343512 HC_gene_7349_tx_9 3 + 343227 343512 . 1 286 0 -chrXIV 343337 343890 HC_gene_7667_tx_1 2 - 343337 343890 . 1 554 0 -chrXIV 343337 344172 HC_gene_7667_tx_4 1 - 343337 344172 . 1 836 0 -chrXIV 343337 344444 HC_gene_7667_tx_5 1 - 343337 344444 . 1 1108 0 -chrXIV 343337 345510 HC_gene_7667_tx_9 1 - 343337 345510 . 1 2174 0 -chrXIV 343407 343890 HC_gene_7667_tx_2 29 - 343407 343890 . 1 484 0 -chrXIV 343407 343944 HC_gene_7667_tx_3 20 - 343407 343944 . 1 538 0 -chrXIV 343407 344172 HC_gene_7667_tx_6 35 - 343407 344172 . 1 766 0 -chrXIV 343407 344267 HC_gene_7667_tx_7 12 - 343407 344267 . 1 861 0 -chrXIV 343407 344444 HC_gene_7667_tx_8 13 - 343407 344444 . 1 1038 0 -chrXIV 343407 345297 HC_gene_7667_tx_10 11 - 343407 345297 . 1 1891 0 -chrXIV 343407 345510 HC_gene_7667_tx_11 64 - 343407 345510 . 1 2104 0 -chrXIV 343407 345510 HC_gene_7667_tx_12 1 - 343407 345510 . 2 1162,879 0,1225 -chrXIV 343407 345510 HC_gene_7667_tx_13 1 - 343407 345510 . 2 1645,410 0,1694 -chrXIV 343407 345510 HC_gene_7667_tx_14 1 - 343407 345510 . 2 1136,879 0,1225 -chrXIV 343407 345510 HC_gene_7667_tx_15 1 - 343407 345510 . 2 947,625 0,1479 -chrXIV 343756 346377 LC_gene_7350_tx_1 1 + 343756 346377 . 1 2622 0 -chrXIV 345445 345850 HC_gene_7668_tx_1 27 - 345445 345850 . 1 406 0 -chrXIV 345445 345925 HC_gene_7668_tx_2 1 - 345445 345925 . 1 481 0 -chrXIV 345445 345940 HC_gene_7668_tx_3 1 - 345445 345940 . 1 496 0 -chrXIV 345445 345980 HC_gene_7668_tx_4 1 - 345445 345980 . 1 536 0 -chrXIV 345445 345981 HC_gene_7668_tx_5 1 - 345445 345981 . 1 537 0 -chrXIV 345445 345984 HC_gene_7668_tx_6 1 - 345445 345984 . 1 540 0 -chrXIV 345445 346013 HC_gene_7668_tx_7 1 - 345445 346013 . 1 569 0 -chrXIV 345445 346040 HC_gene_7668_tx_8 2 - 345445 346040 . 1 596 0 -chrXIV 345445 346041 HC_gene_7668_tx_9 1 - 345445 346041 . 1 597 0 -chrXIV 345445 346044 HC_gene_7668_tx_10 1 - 345445 346044 . 1 600 0 -chrXIV 345445 346059 HC_gene_7668_tx_11 1 - 345445 346059 . 1 615 0 -chrXIV 345445 346060 HC_gene_7668_tx_12 1 - 345445 346060 . 1 616 0 -chrXIV 345445 346063 HC_gene_7668_tx_13 2 - 345445 346063 . 1 619 0 -chrXIV 345445 346065 HC_gene_7668_tx_14 1 - 345445 346065 . 1 621 0 -chrXIV 345445 346066 HC_gene_7668_tx_15 1 - 345445 346066 . 1 622 0 -chrXIV 345445 346072 HC_gene_7668_tx_16 1 - 345445 346072 . 1 628 0 -chrXIV 345445 346073 HC_gene_7668_tx_17 1 - 345445 346073 . 1 629 0 -chrXIV 345445 346082 HC_gene_7668_tx_18 2 - 345445 346082 . 1 638 0 -chrXIV 345445 346083 HC_gene_7668_tx_19 1 - 345445 346083 . 1 639 0 -chrXIV 345445 346084 HC_gene_7668_tx_20 1 - 345445 346084 . 1 640 0 -chrXIV 345445 346096 HC_gene_7668_tx_21 220 - 345445 346096 . 1 652 0 -chrXIV 346300 347630 HC_gene_7351_tx_1 28 + 346300 347630 . 1 1331 0 -chrXIV 346300 347630 HC_gene_7351_tx_2 1 + 346300 347630 . 2 232,662 0,669 -chrXIV 347543 348100 HC_gene_7669_tx_1 13 - 347543 348100 . 1 558 0 -chrXIV 347543 348100 HC_gene_7669_tx_2 1 - 347543 348100 . 2 378,118 0,440 -chrXIV 347543 348575 HC_gene_7669_tx_3 72 - 347543 348575 . 1 1033 0 -chrXIV 347543 348575 HC_gene_7669_tx_4 1 - 347543 348575 . 2 386,587 0,446 -chrXIV 348004 349340 LC_gene_7352_tx_1 1 + 348004 349340 . 1 1337 0 -chrXIV 348999 349775 HC_gene_7670_tx_1 3 - 348999 349775 . 1 777 0 -chrXIV 349261 349660 HC_gene_7670_tx_2 44 - 349261 349660 . 1 400 0 -chrXIV 349261 349775 HC_gene_7670_tx_3 374 - 349261 349775 . 1 515 0 -chrXIV 349261 350492 HC_gene_7670_tx_4 3 - 349261 350492 . 1 1232 0 -chrXIV 349261 350683 HC_gene_7670_tx_5 16 - 349261 350683 . 1 1423 0 -chrXIV 349625 350668 HC_gene_7671_tx_1 1 - 349625 350668 . 1 1044 0 -chrXIV 349625 350683 HC_gene_7671_tx_2 5 - 349625 350683 . 1 1059 0 -chrXIV 349625 350714 HC_gene_7671_tx_3 1 - 349625 350714 . 1 1090 0 -chrXIV 349738 350492 HC_gene_7671_tx_4 1 - 349738 350492 . 1 755 0 -chrXIV 349738 350669 HC_gene_7671_tx_5 1 - 349738 350669 . 1 932 0 -chrXIV 349738 350683 HC_gene_7671_tx_6 30 - 349738 350683 . 1 946 0 -chrXIV 349738 350705 HC_gene_7671_tx_7 1 - 349738 350705 . 1 968 0 -chrXIV 349837 350492 HC_gene_7671_tx_8 1 - 349837 350492 . 1 656 0 -chrXIV 349837 350683 HC_gene_7671_tx_9 6 - 349837 350683 . 1 847 0 -chrXIV 350551 351461 HC_gene_7353_tx_1 1 + 350551 351461 . 1 911 0 -chrXIV 350824 351448 HC_gene_7672_tx_1 3 - 350824 351448 . 1 625 0 -chrXIV 350862 351461 HC_gene_7353_tx_2 178 + 350862 351461 . 2 96,408 0,192 -chrXIV 350862 351461 HC_gene_7353_tx_3 33 + 350862 351461 . 2 96,401 0,199 -chrXIV 350862 351461 HC_gene_7353_tx_4 1 + 350862 351461 . 2 96,284 0,316 -chrXIV 350862 351461 HC_gene_7353_tx_5 2 + 350862 351461 . 2 96,384 0,216 -chrXIV 350862 351461 HC_gene_7353_tx_6 1 + 350862 351461 . 2 109,389 0,211 -chrXIV 350862 351461 HC_gene_7353_tx_7 12 + 350862 351461 . 1 600 0 -chrXIV 350862 351461 HC_gene_7353_tx_8 1 + 350862 351461 . 2 96,411 0,189 -chrXIV 350862 351461 HC_gene_7353_tx_9 1 + 350862 351461 . 2 96,365 0,235 -chrXIV 350862 351461 HC_gene_7353_tx_10 1 + 350862 351461 . 2 84,401 0,199 -chrXIV 350945 351448 HC_gene_7672_tx_2 1 - 350945 351448 . 1 504 0 -chrXIV 351058 351461 HC_gene_7353_tx_11 95 + 351058 351461 . 1 404 0 -chrXIV 351168 351461 HC_gene_7353_tx_12 11 + 351168 351461 . 1 294 0 -chrXIV 351644 352344 HC_gene_7354_tx_1 11 + 351644 352344 . 1 701 0 -chrXIV 352372 352705 HC_gene_7355_tx_1 3 + 352372 352705 . 1 334 0 -chrXIV 352744 354062 HC_gene_7673_tx_1 10 - 352744 354062 . 1 1319 0 -chrXIV 352744 354346 HC_gene_7673_tx_2 8 - 352744 354346 . 1 1603 0 -chrXIV 352744 354943 HC_gene_7673_tx_3 1 - 352744 354943 . 1 2200 0 -chrXIV 352744 355158 HC_gene_7673_tx_4 14 - 352744 355158 . 1 2415 0 -chrXIV 352744 355158 HC_gene_7673_tx_5 1 - 352744 355158 . 2 1181,1182 0,1233 -chrXIV 352744 355158 HC_gene_7673_tx_6 1 - 352744 355158 . 2 1883,438 0,1977 -chrXIV 352744 355237 HC_gene_7673_tx_7 2 - 352744 355237 . 1 2494 0 -chrXIV 354313 355250 MC_gene_7356_tx_1 1 + 354313 355250 . 1 938 0 -chrXIV 354414 354726 MC_gene_7356_tx_2 1 + 354414 354726 . 1 313 0 -chrXIV 355864 356445 HC_gene_7357_tx_1 1 + 355864 356445 . 1 582 0 -chrXIV 355864 356450 HC_gene_7357_tx_2 2 + 355864 356450 . 1 587 0 -chrXIV 355864 356451 HC_gene_7357_tx_3 1 + 355864 356451 . 1 588 0 -chrXIV 355864 356455 HC_gene_7357_tx_4 1 + 355864 356455 . 1 592 0 -chrXIV 355864 356458 HC_gene_7357_tx_5 1 + 355864 356458 . 1 595 0 -chrXIV 355864 356460 HC_gene_7357_tx_6 1 + 355864 356460 . 1 597 0 -chrXIV 355864 356463 HC_gene_7357_tx_7 1 + 355864 356463 . 1 600 0 -chrXIV 355864 356466 HC_gene_7357_tx_8 4 + 355864 356466 . 1 603 0 -chrXIV 355864 356467 HC_gene_7357_tx_9 5 + 355864 356467 . 1 604 0 -chrXIV 355864 356468 HC_gene_7357_tx_10 5 + 355864 356468 . 1 605 0 -chrXIV 355864 356469 HC_gene_7357_tx_11 2 + 355864 356469 . 1 606 0 -chrXIV 355864 356471 HC_gene_7357_tx_12 2 + 355864 356471 . 1 608 0 -chrXIV 355864 356480 HC_gene_7357_tx_13 1 + 355864 356480 . 1 617 0 -chrXIV 355864 356484 HC_gene_7357_tx_14 1 + 355864 356484 . 1 621 0 -chrXIV 356354 356708 HC_gene_7674_tx_1 2 - 356354 356708 . 1 355 0 -chrXIV 356354 356881 HC_gene_7674_tx_2 32 - 356354 356881 . 1 528 0 -chrXIV 356531 357398 HC_gene_7358_tx_1 1 + 356531 357398 . 1 868 0 -chrXIV 357172 357463 HC_gene_7359_tx_1 1 + 357172 357463 . 1 292 0 -chrXIV 357172 357464 HC_gene_7359_tx_2 1 + 357172 357464 . 1 293 0 -chrXIV 357172 357466 HC_gene_7359_tx_3 1 + 357172 357466 . 1 295 0 -chrXIV 357172 357471 HC_gene_7359_tx_4 1 + 357172 357471 . 1 300 0 -chrXIV 357172 359032 HC_gene_7359_tx_5 7 + 357172 359032 . 1 1861 0 -chrXIV 357172 359032 HC_gene_7359_tx_6 1 + 357172 359032 . 2 480,759 0,1102 -chrXIV 357481 359032 HC_gene_7359_tx_7 8 + 357481 359032 . 1 1552 0 -chrXIV 358928 360638 MC_gene_7675_tx_1 1 - 358928 360638 . 1 1711 0 -chrXIV 359570 360695 HC_gene_7360_tx_1 183 + 359570 360695 . 1 1126 0 -chrXIV 359930 360695 HC_gene_7360_tx_2 25 + 359930 360695 . 1 766 0 -chrXIV 360598 362136 HC_gene_7676_tx_1 1 - 360598 362136 . 1 1539 0 -chrXIV 360598 365806 HC_gene_7676_tx_3 1 - 360598 365806 . 1 5209 0 -chrXIV 360729 361195 HC_gene_7676_tx_5 4 - 360729 361195 . 1 467 0 -chrXIV 360729 361297 HC_gene_7676_tx_6 2 - 360729 361297 . 1 569 0 -chrXIV 360729 361478 HC_gene_7676_tx_7 4 - 360729 361478 . 1 750 0 -chrXIV 360729 362136 HC_gene_7676_tx_2 2 - 360729 362136 . 1 1408 0 -chrXIV 360729 365806 HC_gene_7676_tx_4 4 - 360729 365806 . 1 5078 0 -chrXIV 361226 362079 MC_gene_7361_tx_1 1 + 361226 362079 . 1 854 0 -chrXIV 366013 366499 HC_gene_7362_tx_1 2 + 366013 366499 . 2 23,342 0,145 -chrXIV 366013 366499 HC_gene_7362_tx_2 4 + 366013 366499 . 1 487 0 -chrXIV 366013 366631 HC_gene_7362_tx_3 3 + 366013 366631 . 2 23,474 0,145 -chrXIV 366013 366631 HC_gene_7362_tx_4 9 + 366013 366631 . 1 619 0 -chrXIV 366144 366499 HC_gene_7362_tx_5 12 + 366144 366499 . 1 356 0 -chrXIV 366144 366631 HC_gene_7362_tx_6 81 + 366144 366631 . 1 488 0 -chrXIV 366216 366631 HC_gene_7362_tx_7 4 + 366216 366631 . 1 416 0 -chrXIV 366709 368484 HC_gene_7363_tx_1 117 + 366709 368484 . 1 1776 0 -chrXIV 366709 368484 HC_gene_7363_tx_2 1 + 366709 368484 . 2 591,900 0,876 -chrXIV 366865 368484 HC_gene_7363_tx_3 22 + 366865 368484 . 1 1620 0 -chrXIV 367392 368484 HC_gene_7363_tx_4 6 + 367392 368484 . 1 1093 0 -chrXIV 367457 368484 HC_gene_7363_tx_5 25 + 367457 368484 . 1 1028 0 -chrXIV 367457 368484 HC_gene_7363_tx_6 1 + 367457 368484 . 2 223,302 0,726 -chrXIV 367457 368484 HC_gene_7363_tx_7 1 + 367457 368484 . 2 332,643 0,385 -chrXIV 367559 368484 HC_gene_7363_tx_8 18 + 367559 368484 . 1 926 0 -chrXIV 367690 368484 HC_gene_7363_tx_9 26 + 367690 368484 . 1 795 0 -chrXIV 368375 369131 HC_gene_7677_tx_1 4 - 368375 369131 . 1 757 0 -chrXIV 368375 369131 HC_gene_7677_tx_2 1 - 368375 369131 . 2 486,191 0,566 -chrXIV 368375 369722 HC_gene_7677_tx_4 2 - 368375 369722 . 1 1348 0 -chrXIV 368375 369915 HC_gene_7677_tx_5 4 - 368375 369915 . 1 1541 0 -chrXIV 368375 370150 HC_gene_7677_tx_6 21 - 368375 370150 . 1 1776 0 -chrXIV 368375 370150 HC_gene_7677_tx_7 1 - 368375 370150 . 2 1594,108 0,1668 -chrXIV 368375 370150 HC_gene_7677_tx_8 1 - 368375 370150 . 2 792,531 0,1245 -chrXIV 368460 369131 HC_gene_7677_tx_3 2 - 368460 369131 . 1 672 0 -chrXIV 368460 369722 HC_gene_7677_tx_9 2 - 368460 369722 . 1 1263 0 -chrXIV 368460 369915 HC_gene_7677_tx_10 1 - 368460 369915 . 1 1456 0 -chrXIV 368460 370150 HC_gene_7677_tx_11 18 - 368460 370150 . 1 1691 0 -chrXIV 370358 371774 HC_gene_7364_tx_1 43 + 370358 371774 . 1 1417 0 -chrXIV 370566 371774 HC_gene_7364_tx_2 4 + 370566 371774 . 1 1209 0 -chrXIV 370767 371774 HC_gene_7364_tx_3 7 + 370767 371774 . 1 1008 0 -chrXIV 370767 371774 HC_gene_7364_tx_4 1 + 370767 371774 . 2 210,686 0,322 -chrXIV 370767 371774 HC_gene_7364_tx_5 1 + 370767 371774 . 2 349,564 0,444 -chrXIV 371003 371774 HC_gene_7364_tx_6 15 + 371003 371774 . 1 772 0 -chrXIV 371214 371774 HC_gene_7364_tx_7 19 + 371214 371774 . 1 561 0 -chrXIV 371281 371774 HC_gene_7364_tx_8 8 + 371281 371774 . 1 494 0 -chrXIV 371341 371774 HC_gene_7364_tx_9 4 + 371341 371774 . 1 434 0 -chrXIV 371401 372244 HC_gene_7678_tx_1 8 - 371401 372244 . 1 844 0 -chrXIV 371415 371774 HC_gene_7364_tx_10 14 + 371415 371774 . 1 360 0 -chrXIV 371500 371774 HC_gene_7364_tx_11 11 + 371500 371774 . 1 275 0 -chrXIV 371502 372244 HC_gene_7678_tx_2 11 - 371502 372244 . 1 743 0 -chrXIV 371687 371950 HC_gene_7678_tx_3 24 - 371687 371950 . 1 264 0 -chrXIV 371687 372027 HC_gene_7678_tx_4 88 - 371687 372027 . 1 341 0 -chrXIV 371687 372244 HC_gene_7678_tx_5 1755 - 371687 372244 . 1 558 0 -chrXIV 372372 372777 HC_gene_7679_tx_1 12 - 372372 372777 . 1 406 0 -chrXIV 372372 373309 HC_gene_7679_tx_2 16 - 372372 373309 . 1 938 0 -chrXIV 372372 373627 HC_gene_7679_tx_3 129 - 372372 373627 . 1 1256 0 -chrXIV 372465 374189 HC_gene_7365_tx_1 2 + 372465 374189 . 1 1725 0 -chrXIV 373549 374189 HC_gene_7365_tx_2 1 + 373549 374189 . 1 641 0 -chrXIV 373979 374622 HC_gene_7680_tx_1 1 - 373979 374622 . 1 644 0 -chrXIV 373979 374713 HC_gene_7680_tx_2 1 - 373979 374713 . 1 735 0 -chrXIV 373988 374329 HC_gene_7366_tx_1 3 + 373988 374329 . 1 342 0 -chrXIV 374056 374475 HC_gene_7680_tx_5 10 - 374056 374475 . 1 420 0 -chrXIV 374056 374622 HC_gene_7680_tx_3 4 - 374056 374622 . 1 567 0 -chrXIV 374056 374713 HC_gene_7680_tx_4 36 - 374056 374713 . 1 658 0 -chrXIV 375229 378580 HC_gene_7367_tx_1 1 + 375229 378580 . 2 2188,1071 0,2281 -chrXIV 375229 378580 HC_gene_7367_tx_2 12 + 375229 378580 . 1 3352 0 -chrXIV 375229 378580 HC_gene_7367_tx_3 1 + 375229 378580 . 2 121,2739 0,613 -chrXIV 375411 378580 HC_gene_7367_tx_4 2 + 375411 378580 . 1 3170 0 -chrXIV 375731 378403 LC_gene_7681_tx_1 1 - 375731 378403 . 1 2673 0 -chrXIV 376636 378580 HC_gene_7367_tx_5 4 + 376636 378580 . 1 1945 0 -chrXIV 377307 378580 HC_gene_7367_tx_6 7 + 377307 378580 . 1 1274 0 -chrXIV 378719 379454 HC_gene_7368_tx_1 95 + 378719 379454 . 1 736 0 -chrXIV 378719 379556 HC_gene_7368_tx_2 321 + 378719 379556 . 1 838 0 -chrXIV 379052 379454 HC_gene_7368_tx_3 13 + 379052 379454 . 1 403 0 -chrXIV 379052 379556 HC_gene_7368_tx_4 43 + 379052 379556 . 1 505 0 -chrXIV 379254 380680 HC_gene_7682_tx_1 2 - 379254 380680 . 1 1427 0 -chrXIV 379254 380874 HC_gene_7682_tx_2 2 - 379254 380874 . 2 1436,93 0,1528 -chrXIV 379345 380400 HC_gene_7682_tx_7 3 - 379345 380400 . 1 1056 0 -chrXIV 379345 380680 HC_gene_7682_tx_3 3 - 379345 380680 . 1 1336 0 -chrXIV 379345 380874 HC_gene_7682_tx_4 14 - 379345 380874 . 2 1345,93 0,1437 -chrXIV 379468 380400 HC_gene_7682_tx_8 16 - 379468 380400 . 1 933 0 -chrXIV 379468 380680 HC_gene_7682_tx_5 24 - 379468 380680 . 1 1213 0 -chrXIV 379468 380874 HC_gene_7682_tx_6 54 - 379468 380874 . 2 1222,93 0,1314 -chrXIV 380578 380958 LC_gene_7369_tx_1 1 + 380578 380958 . 1 381 0 -chrXIV 381111 381312 HC_gene_7370_tx_1 1 + 381111 381312 . 1 202 0 -chrXIV 381111 382341 HC_gene_7370_tx_2 2 + 381111 382341 . 1 1231 0 -chrXIV 381111 382341 HC_gene_7370_tx_3 1 + 381111 382341 . 2 684,480 0,751 -chrXIV 381225 382502 MC_gene_7683_tx_1 1 - 381225 382502 . 1 1278 0 -chrXIV 381285 382341 HC_gene_7370_tx_4 1 + 381285 382341 . 1 1057 0 -chrXIV 381285 382534 HC_gene_7370_tx_5 1 + 381285 382534 . 1 1250 0 -chrXIV 381420 382341 HC_gene_7370_tx_6 53 + 381420 382341 . 1 922 0 -chrXIV 381420 382534 HC_gene_7370_tx_7 9 + 381420 382534 . 1 1115 0 -chrXIV 382713 383784 MC_gene_7684_tx_1 1 - 382713 383784 . 1 1072 0 -chrXIV 383910 387003 HC_gene_7371_tx_1 2 + 383910 387003 . 1 3094 0 -chrXIV 383910 387077 HC_gene_7371_tx_2 3 + 383910 387077 . 1 3168 0 -chrXIV 384279 387003 HC_gene_7371_tx_3 1 + 384279 387003 . 1 2725 0 -chrXIV 384279 387077 HC_gene_7371_tx_4 1 + 384279 387077 . 1 2799 0 -chrXIV 387171 389734 HC_gene_7372_tx_1 4 + 387171 389734 . 1 2564 0 -chrXIV 389302 389734 HC_gene_7372_tx_2 3 + 389302 389734 . 1 433 0 -chrXIV 389970 392380 HC_gene_7685_tx_1 2 - 389970 392380 . 1 2411 0 -chrXIV 390047 392150 HC_gene_7685_tx_2 8 - 390047 392150 . 1 2104 0 -chrXIV 390047 392150 HC_gene_7685_tx_3 1 - 390047 392150 . 2 566,301 0,1803 -chrXIV 390047 392380 HC_gene_7685_tx_4 29 - 390047 392380 . 1 2334 0 -chrXIV 390047 392380 HC_gene_7685_tx_5 1 - 390047 392380 . 2 566,1117 0,1217 -chrXIV 390047 392380 HC_gene_7685_tx_6 1 - 390047 392380 . 2 1444,769 0,1565 -chrXIV 392852 394455 HC_gene_7373_tx_1 20 + 392852 394455 . 1 1604 0 -chrXIV 392852 394455 HC_gene_7373_tx_2 1 + 392852 394455 . 3 140,151,609 0,182,995 -chrXIV 392852 394608 HC_gene_7373_tx_3 10 + 392852 394608 . 1 1757 0 -chrXIV 392958 394331 LC_gene_7686_tx_1 1 - 392958 394331 . 1 1374 0 -chrXIV 393722 394455 HC_gene_7373_tx_4 19 + 393722 394455 . 1 734 0 -chrXIV 393722 394608 HC_gene_7373_tx_5 5 + 393722 394608 . 1 887 0 -chrXIV 393722 395121 HC_gene_7373_tx_6 1 + 393722 395121 . 1 1400 0 -chrXIV 394070 394455 HC_gene_7373_tx_7 8 + 394070 394455 . 1 386 0 -chrXIV 394070 394608 HC_gene_7373_tx_8 8 + 394070 394608 . 1 539 0 -chrXIV 394651 396093 HC_gene_7374_tx_1 1 + 394651 396093 . 1 1443 0 -chrXIV 394651 397795 HC_gene_7374_tx_2 24 + 394651 397795 . 1 3145 0 -chrXIV 394651 397795 HC_gene_7374_tx_3 1 + 394651 397795 . 2 1019,2063 0,1082 -chrXIV 394651 397795 HC_gene_7374_tx_4 1 + 394651 397795 . 2 1559,1529 0,1616 -chrXIV 394651 397795 HC_gene_7374_tx_5 1 + 394651 397795 . 2 1136,1940 0,1205 -chrXIV 394651 397795 HC_gene_7374_tx_6 1 + 394651 397795 . 2 1196,1890 0,1255 -chrXIV 394651 397795 HC_gene_7374_tx_7 1 + 394651 397795 . 2 1166,1913 0,1232 -chrXIV 394651 397905 HC_gene_7374_tx_8 1 + 394651 397905 . 2 576,2454 0,801 -chrXIV 394651 397967 HC_gene_7374_tx_9 1 + 394651 397967 . 1 3317 0 -chrXIV 395440 397795 HC_gene_7374_tx_10 3 + 395440 397795 . 1 2356 0 -chrXIV 395440 397905 HC_gene_7374_tx_11 1 + 395440 397905 . 2 1358,1054 0,1412 -chrXIV 396447 397795 HC_gene_7374_tx_12 10 + 396447 397795 . 1 1349 0 -chrXIV 396447 397905 HC_gene_7374_tx_13 1 + 396447 397905 . 1 1459 0 -chrXIV 397669 398340 HC_gene_7687_tx_1 27 - 397669 398340 . 1 672 0 -chrXIV 397815 398340 HC_gene_7687_tx_2 63 - 397815 398340 . 1 526 0 -chrXIV 398446 399010 HC_gene_7688_tx_1 27 - 398446 399010 . 1 565 0 -chrXIV 398446 399288 HC_gene_7688_tx_2 13 - 398446 399288 . 1 843 0 -chrXIV 398446 399415 HC_gene_7688_tx_3 20 - 398446 399415 . 1 970 0 -chrXIV 398446 399681 HC_gene_7688_tx_6 18 - 398446 399681 . 1 1236 0 -chrXIV 398446 399794 HC_gene_7688_tx_7 5 - 398446 399794 . 1 1349 0 -chrXIV 398446 399853 HC_gene_7688_tx_8 7 - 398446 399853 . 1 1408 0 -chrXIV 398446 400004 HC_gene_7688_tx_9 12 - 398446 400004 . 1 1559 0 -chrXIV 398446 400354 HC_gene_7688_tx_10 9 - 398446 400354 . 1 1909 0 -chrXIV 398446 400354 HC_gene_7688_tx_11 1 - 398446 400354 . 2 886,917 0,992 -chrXIV 398446 400465 HC_gene_7688_tx_12 9 - 398446 400465 . 1 2020 0 -chrXIV 398446 400465 HC_gene_7688_tx_13 1 - 398446 400465 . 2 1379,251 0,1769 -chrXIV 398446 400465 HC_gene_7688_tx_14 1 - 398446 400465 . 2 886,1028 0,992 -chrXIV 398446 400586 HC_gene_7688_tx_15 70 - 398446 400586 . 1 2141 0 -chrXIV 398446 400586 HC_gene_7688_tx_16 1 - 398446 400586 . 2 1275,323 0,1818 -chrXIV 398446 400586 HC_gene_7688_tx_17 1 - 398446 400586 . 2 1713,372 0,1769 -chrXIV 398446 400586 HC_gene_7688_tx_18 1 - 398446 400586 . 2 965,1125 0,1016 -chrXIV 398584 399010 HC_gene_7688_tx_30 3 - 398584 399010 . 1 427 0 -chrXIV 398584 399288 HC_gene_7688_tx_4 4 - 398584 399288 . 1 705 0 -chrXIV 398584 399415 HC_gene_7688_tx_5 3 - 398584 399415 . 1 832 0 -chrXIV 398584 399681 HC_gene_7688_tx_19 6 - 398584 399681 . 1 1098 0 -chrXIV 398584 399853 HC_gene_7688_tx_20 5 - 398584 399853 . 1 1270 0 -chrXIV 398584 400004 HC_gene_7688_tx_21 1 - 398584 400004 . 1 1421 0 -chrXIV 398584 400354 HC_gene_7688_tx_22 5 - 398584 400354 . 1 1771 0 -chrXIV 398584 400465 HC_gene_7688_tx_23 4 - 398584 400465 . 1 1882 0 -chrXIV 398584 400586 HC_gene_7688_tx_24 1 - 398584 400586 . 2 1324,540 0,1463 -chrXIV 398584 400586 HC_gene_7688_tx_25 11 - 398584 400586 . 1 2003 0 -chrXIV 398584 400586 HC_gene_7688_tx_26 1 - 398584 400586 . 2 799,1094 0,909 -chrXIV 398584 400586 HC_gene_7688_tx_27 1 - 398584 400586 . 2 820,1115 0,888 -chrXIV 398584 400586 HC_gene_7688_tx_28 1 - 398584 400586 . 2 769,1131 0,872 -chrXIV 398584 400586 HC_gene_7688_tx_29 1 - 398584 400586 . 2 850,1100 0,903 -chrXIV 401032 402613 HC_gene_7375_tx_1 23 + 401032 402613 . 1 1582 0 -chrXIV 401032 402972 HC_gene_7375_tx_2 1 + 401032 402972 . 1 1941 0 -chrXIV 402522 403052 HC_gene_7689_tx_1 21 - 402522 403052 . 1 531 0 -chrXIV 402522 403287 HC_gene_7689_tx_2 5 - 402522 403287 . 1 766 0 -chrXIV 402522 403442 HC_gene_7689_tx_3 4 - 402522 403442 . 1 921 0 -chrXIV 402522 403786 HC_gene_7689_tx_5 4 - 402522 403786 . 1 1265 0 -chrXIV 402522 403902 HC_gene_7689_tx_6 7 - 402522 403902 . 1 1381 0 -chrXIV 402522 404271 HC_gene_7689_tx_7 2 - 402522 404271 . 1 1750 0 -chrXIV 402522 404772 HC_gene_7689_tx_8 1 - 402522 404772 . 2 1795,43 0,2208 -chrXIV 402522 405165 HC_gene_7689_tx_9 1 - 402522 405165 . 1 2644 0 -chrXIV 402522 405606 HC_gene_7689_tx_10 9 - 402522 405606 . 1 3085 0 -chrXIV 402522 405606 HC_gene_7689_tx_11 1 - 402522 405606 . 2 1932,1078 0,2007 -chrXIV 402522 405606 HC_gene_7689_tx_12 1 - 402522 405606 . 2 2349,409 0,2676 -chrXIV 402590 403287 HC_gene_7689_tx_4 1 - 402590 403287 . 1 698 0 -chrXIV 406140 407813 MC_gene_7690_tx_1 1 - 406140 407813 . 1 1674 0 -chrXIV 407485 408105 HC_gene_7376_tx_1 3 + 407485 408105 . 1 621 0 -chrXIV 408280 410074 HC_gene_7377_tx_1 30 + 408280 410074 . 1 1795 0 -chrXIV 409957 412089 HC_gene_7691_tx_1 10 - 409957 412089 . 1 2133 0 -chrXIV 409957 412089 HC_gene_7691_tx_2 1 - 409957 412089 . 2 1366,163 0,1970 -chrXIV 410064 412089 HC_gene_7691_tx_3 6 - 410064 412089 . 1 2026 0 -chrXIV 411506 412089 HC_gene_7691_tx_4 1 - 411506 412089 . 1 584 0 -chrXIV 411662 412089 HC_gene_7691_tx_5 1 - 411662 412089 . 1 428 0 -chrXIV 412666 413235 MC_gene_7692_tx_1 1 - 412666 413235 . 1 570 0 -chrXIV 412725 413371 HC_gene_7378_tx_1 282 + 412725 413371 . 1 647 0 -chrXIV 412903 413371 HC_gene_7378_tx_2 40 + 412903 413371 . 1 469 0 -chrXIV 413597 415764 HC_gene_7379_tx_1 1 + 413597 415764 . 1 2168 0 -chrXIV 413597 415766 HC_gene_7379_tx_2 1 + 413597 415766 . 2 1450,668 0,1502 -chrXIV 413597 416422 HC_gene_7379_tx_3 15 + 413597 416422 . 2 1309,509 0,2317 -chrXIV 413597 416422 HC_gene_7379_tx_4 302 + 413597 416422 . 2 1315,509 0,2317 -chrXIV 413597 416422 HC_gene_7379_tx_5 1 + 413597 416422 . 2 666,509 0,2317 -chrXIV 413597 416422 HC_gene_7379_tx_6 1 + 413597 416422 . 3 868,398,509 0,917,2317 -chrXIV 413597 416422 HC_gene_7379_tx_7 1 + 413597 416422 . 3 1047,210,509 0,1105,2317 -chrXIV 413597 416422 HC_gene_7379_tx_8 1 + 413597 416422 . 3 1061,161,509 0,1154,2317 -chrXIV 413597 416422 HC_gene_7379_tx_9 1 + 413597 416422 . 3 1315,81,368 0,2317,2458 -chrXIV 413597 416422 HC_gene_7379_tx_10 1 + 413597 416422 . 3 1047,163,509 0,1152,2317 -chrXIV 413597 416422 HC_gene_7379_tx_11 1 + 413597 416422 . 2 1445,1327 0,1499 -chrXIV 413597 416422 HC_gene_7379_tx_12 1 + 413597 416422 . 3 1031,192,509 0,1123,2317 -chrXIV 413597 416422 HC_gene_7379_tx_13 1 + 413597 416422 . 3 606,519,509 0,796,2317 -chrXIV 413597 416422 HC_gene_7379_tx_14 1 + 413597 416422 . 2 1315,500 0,2326 -chrXIV 413597 416422 HC_gene_7379_tx_15 1 + 413597 416422 . 3 996,210,509 0,1099,2317 -chrXIV 413597 416422 HC_gene_7379_tx_16 1 + 413597 416422 . 3 490,723,509 0,592,2317 -chrXIV 413597 416422 HC_gene_7379_tx_17 1 + 413597 416422 . 3 310,723,509 0,592,2317 -chrXIV 413597 416422 HC_gene_7379_tx_18 1 + 413597 416422 . 3 1315,72,379 0,2317,2447 -chrXIV 413597 416422 HC_gene_7379_tx_19 1 + 413597 416422 . 3 1039,216,509 0,1099,2317 -chrXIV 413597 416422 HC_gene_7379_tx_20 1 + 413597 416422 . 3 193,1035,509 0,280,2317 -chrXIV 413597 416422 HC_gene_7379_tx_21 1 + 413597 416422 . 3 572,593,509 0,722,2317 -chrXIV 413597 416422 HC_gene_7379_tx_22 1 + 413597 416422 . 3 1315,72,381 0,2317,2445 -chrXIV 413597 416786 HC_gene_7379_tx_23 1 + 413597 416786 . 2 1315,873 0,2317 -chrXIV 413756 416422 HC_gene_7379_tx_24 33 + 413756 416422 . 2 1156,509 0,2158 -chrXIV 413756 416422 HC_gene_7379_tx_25 1 + 413756 416422 . 3 1156,375,74 0,2158,2593 -chrXIV 413756 416422 HC_gene_7379_tx_26 1 + 413756 416422 . 3 64,300,509 0,856,2158 -chrXIV 413756 416422 HC_gene_7379_tx_27 1 + 413756 416422 . 3 932,161,509 0,995,2158 -chrXIV 413756 416422 HC_gene_7379_tx_28 2 + 413756 416422 . 2 1150,509 0,2158 -chrXIV 413756 416422 HC_gene_7379_tx_29 1 + 413756 416422 . 3 1156,246,229 0,2158,2438 -chrXIV 413756 416422 HC_gene_7379_tx_30 1 + 413756 416422 . 3 795,239,509 0,917,2158 -chrXIV 413829 416422 HC_gene_7379_tx_31 18 + 413829 416422 . 2 1083,509 0,2085 -chrXIV 413829 416422 HC_gene_7379_tx_32 1 + 413829 416422 . 2 1059,477 0,2117 -chrXIV 414465 416422 HC_gene_7379_tx_33 29 + 414465 416422 . 2 447,509 0,1449 -chrXIV 414465 416422 HC_gene_7379_tx_34 1 + 414465 416422 . 1 1958 0 -chrXIV 414465 416422 HC_gene_7379_tx_35 1 + 414465 416422 . 2 441,509 0,1449 -chrXIV 414551 416422 HC_gene_7379_tx_36 40 + 414551 416422 . 2 361,509 0,1363 -chrXIV 414551 416422 HC_gene_7379_tx_37 2 + 414551 416422 . 2 355,509 0,1363 -chrXIV 414551 416422 HC_gene_7379_tx_38 1 + 414551 416422 . 1 1872 0 -chrXIV 414551 416422 HC_gene_7379_tx_39 1 + 414551 416422 . 2 313,509 0,1363 -chrXIV 414551 416786 HC_gene_7379_tx_40 1 + 414551 416786 . 2 361,873 0,1363 -chrXIV 414797 415698 HC_gene_7379_tx_46 1 + 414797 415698 . 1 902 0 -chrXIV 414797 415765 HC_gene_7379_tx_47 1 + 414797 415765 . 1 969 0 -chrXIV 414797 416422 HC_gene_7379_tx_41 50 + 414797 416422 . 2 115,509 0,1117 -chrXIV 414797 416422 HC_gene_7379_tx_42 1 + 414797 416422 . 2 109,509 0,1117 -chrXIV 414797 416422 HC_gene_7379_tx_43 1 + 414797 416422 . 2 168,489 0,1137 -chrXIV 414797 416422 HC_gene_7379_tx_44 1 + 414797 416422 . 2 262,1309 0,317 -chrXIV 414797 416422 HC_gene_7379_tx_45 1 + 414797 416422 . 2 250,1322 0,304 -chrXIV 415237 415764 HC_gene_7379_tx_48 6 + 415237 415764 . 1 528 0 -chrXIV 415237 415766 HC_gene_7379_tx_49 3 + 415237 415766 . 1 530 0 -chrXIV 415237 415767 HC_gene_7379_tx_50 1 + 415237 415767 . 1 531 0 -chrXIV 415237 415771 HC_gene_7379_tx_51 2 + 415237 415771 . 1 535 0 -chrXIV 415237 415776 HC_gene_7379_tx_52 1 + 415237 415776 . 1 540 0 -chrXIV 415237 415777 HC_gene_7379_tx_53 2 + 415237 415777 . 1 541 0 -chrXIV 415237 416422 HC_gene_7379_tx_54 1 + 415237 416422 . 1 1186 0 -chrXIV 415908 416422 HC_gene_7379_tx_55 105 + 415908 416422 . 1 515 0 -chrXIV 415908 416422 HC_gene_7379_tx_56 1 + 415908 416422 . 2 222,198 0,317 -chrXIV 415913 416422 HC_gene_7379_tx_57 1 + 415913 416422 . 1 510 0 -chrXIV 415919 416422 HC_gene_7379_tx_58 1 + 415919 416422 . 1 504 0 -chrXIV 416057 416422 HC_gene_7379_tx_59 88 + 416057 416422 . 1 366 0 -chrXIV 416456 416786 HC_gene_7379_tx_60 3 + 416456 416786 . 1 331 0 -chrXIV 416595 416786 HC_gene_7379_tx_61 10 + 416595 416786 . 1 192 0 -chrXIV 416595 416918 HC_gene_7379_tx_62 16 + 416595 416918 . 1 324 0 -chrXIV 416659 417311 HC_gene_7693_tx_1 176 - 416659 417311 . 1 653 0 -chrXIV 416659 417549 HC_gene_7693_tx_2 117 - 416659 417549 . 1 891 0 -chrXIV 417704 417995 HC_gene_7694_tx_1 50 - 417704 417995 . 1 292 0 -chrXIV 417704 418334 HC_gene_7694_tx_2 37 - 417704 418334 . 1 631 0 -chrXIV 417704 418527 HC_gene_7694_tx_3 364 - 417704 418527 . 1 824 0 -chrXIV 417812 418245 MC_gene_7380_tx_1 1 + 417812 418245 . 1 434 0 -chrXIV 418816 419016 HC_gene_7381_tx_1 3 + 418816 419016 . 1 201 0 -chrXIV 418867 419592 HC_gene_7695_tx_1 15 - 418867 419592 . 1 726 0 -chrXIV 418867 419861 HC_gene_7695_tx_2 69 - 418867 419861 . 1 995 0 -chrXIV 418867 419861 HC_gene_7695_tx_3 1 - 418867 419861 . 2 60,844 0,151 -chrXIV 418867 419861 HC_gene_7695_tx_4 1 - 418867 419861 . 2 65,870 0,125 -chrXIV 420094 421011 HC_gene_7382_tx_1 40 + 420094 421011 . 1 918 0 -chrXIV 420366 421011 HC_gene_7382_tx_2 2 + 420366 421011 . 1 646 0 -chrXIV 420822 424546 HC_gene_7696_tx_1 4 - 420822 424546 . 1 3725 0 -chrXIV 424777 425040 HC_gene_7697_tx_1 30 - 424777 425040 . 1 264 0 -chrXIV 424777 425350 HC_gene_7697_tx_2 81 - 424777 425350 . 1 574 0 -chrXIV 424777 425350 HC_gene_7697_tx_3 1 - 424777 425350 . 2 397,106 0,468 -chrXIV 424777 426387 HC_gene_7697_tx_4 10 - 424777 426387 . 1 1611 0 -chrXIV 424777 426454 HC_gene_7697_tx_5 17 - 424777 426454 . 1 1678 0 -chrXIV 424777 426578 HC_gene_7697_tx_6 18 - 424777 426578 . 1 1802 0 -chrXIV 424777 426880 HC_gene_7697_tx_7 215 - 424777 426880 . 1 2104 0 -chrXIV 424777 426880 HC_gene_7697_tx_8 1 - 424777 426880 . 2 772,853 0,1251 -chrXIV 424777 426880 HC_gene_7697_tx_9 1 - 424777 426880 . 2 853,1173 0,931 -chrXIV 424777 426880 HC_gene_7697_tx_10 1 - 424777 426880 . 2 1437,565 0,1539 -chrXIV 424777 426880 HC_gene_7697_tx_11 1 - 424777 426880 . 2 1050,994 0,1110 -chrXIV 424777 426880 HC_gene_7697_tx_12 1 - 424777 426880 . 2 819,1189 0,915 -chrXIV 424777 426880 HC_gene_7697_tx_13 1 - 424777 426880 . 2 910,1152 0,952 -chrXIV 424777 426880 HC_gene_7697_tx_14 1 - 424777 426880 . 2 823,1228 0,876 -chrXIV 424777 426880 HC_gene_7697_tx_15 1 - 424777 426880 . 2 519,426 0,1678 -chrXIV 424777 426880 HC_gene_7697_tx_16 1 - 424777 426880 . 2 547,1507 0,597 -chrXIV 424777 427226 HC_gene_7697_tx_17 3 - 424777 427226 . 1 2450 0 -chrXIV 424844 427115 MC_gene_7383_tx_1 1 + 424844 427115 . 2 1447,710 0,1562 -chrXIV 426838 427226 HC_gene_7697_tx_18 1 - 426838 427226 . 1 389 0 -chrXIV 426906 427226 HC_gene_7697_tx_19 1 - 426906 427226 . 1 321 0 -chrXIV 427584 429835 HC_gene_7384_tx_1 9 + 427584 429835 . 1 2252 0 -chrXIV 427584 429835 HC_gene_7384_tx_2 1 + 427584 429835 . 2 322,1751 0,501 -chrXIV 427689 429835 HC_gene_7384_tx_3 2 + 427689 429835 . 1 2147 0 -chrXIV 427755 429835 HC_gene_7384_tx_4 4 + 427755 429835 . 1 2081 0 -chrXIV 427755 429835 HC_gene_7384_tx_5 1 + 427755 429835 . 2 500,702 0,1379 -chrXIV 428052 429835 HC_gene_7384_tx_6 2 + 428052 429835 . 1 1784 0 -chrXIV 428052 429835 HC_gene_7384_tx_7 1 + 428052 429835 . 2 873,798 0,986 -chrXIV 430007 434602 HC_gene_7385_tx_1 2 + 430007 434602 . 1 4596 0 -chrXIV 433337 434602 HC_gene_7385_tx_2 1 + 433337 434602 . 2 69,885 0,381 -chrXIV 434120 434602 HC_gene_7386_tx_1 11 + 434120 434602 . 1 483 0 -chrXIV 434120 434673 HC_gene_7386_tx_2 1 + 434120 434673 . 1 554 0 -chrXIV 434207 434602 HC_gene_7386_tx_3 5 + 434207 434602 . 1 396 0 -chrXIV 434207 434673 HC_gene_7386_tx_4 1 + 434207 434673 . 1 467 0 -chrXIV 434467 435093 LC_gene_7698_tx_1 1 - 434467 435093 . 1 627 0 -chrXIV 434798 437200 HC_gene_7387_tx_1 1 + 434798 437200 . 1 2403 0 -chrXIV 434798 437339 HC_gene_7387_tx_2 8 + 434798 437339 . 1 2542 0 -chrXIV 434798 437339 HC_gene_7387_tx_3 1 + 434798 437339 . 2 284,1737 0,805 -chrXIV 434798 437427 HC_gene_7387_tx_4 2 + 434798 437427 . 1 2630 0 -chrXIV 437566 438459 HC_gene_7388_tx_1 128 + 437566 438459 . 1 894 0 -chrXIV 437640 438459 HC_gene_7388_tx_2 12 + 437640 438459 . 1 820 0 -chrXIV 437927 438459 HC_gene_7388_tx_3 15 + 437927 438459 . 1 533 0 -chrXIV 438217 438923 HC_gene_7699_tx_1 1 - 438217 438923 . 1 707 0 -chrXIV 438217 439115 HC_gene_7699_tx_3 1 - 438217 439115 . 1 899 0 -chrXIV 438217 439316 HC_gene_7699_tx_4 8 - 438217 439316 . 1 1100 0 -chrXIV 438217 439316 HC_gene_7699_tx_5 1 - 438217 439316 . 2 204,827 0,273 -chrXIV 438303 438668 HC_gene_7699_tx_8 7 - 438303 438668 . 1 366 0 -chrXIV 438303 438923 HC_gene_7699_tx_2 16 - 438303 438923 . 1 621 0 -chrXIV 438303 439115 HC_gene_7699_tx_6 9 - 438303 439115 . 1 813 0 -chrXIV 438303 439316 HC_gene_7699_tx_7 54 - 438303 439316 . 1 1014 0 -chrXIV 438585 439575 HC_gene_7389_tx_1 2 + 438585 439575 . 1 991 0 -chrXIV 439229 439575 HC_gene_7389_tx_2 1 + 439229 439575 . 1 347 0 -chrXIV 439481 439916 HC_gene_7700_tx_1 25 - 439481 439916 . 1 436 0 -chrXIV 439481 440045 HC_gene_7700_tx_3 73 - 439481 440045 . 1 565 0 -chrXIV 439481 440159 HC_gene_7700_tx_4 21 - 439481 440159 . 1 679 0 -chrXIV 439481 440368 HC_gene_7700_tx_7 46 - 439481 440368 . 1 888 0 -chrXIV 439481 440368 HC_gene_7700_tx_8 1 - 439481 440368 . 2 460,255 0,633 -chrXIV 439481 440653 HC_gene_7700_tx_10 207 - 439481 440653 . 1 1173 0 -chrXIV 439481 440653 HC_gene_7700_tx_11 1 - 439481 440653 . 2 975,87 0,1086 -chrXIV 439481 440653 HC_gene_7700_tx_12 1 - 439481 440653 . 2 470,63 0,1110 -chrXIV 439481 440653 HC_gene_7700_tx_13 1 - 439481 440653 . 2 981,112 0,1061 -chrXIV 439481 440653 HC_gene_7700_tx_14 1 - 439481 440653 . 2 61,1005 0,168 -chrXIV 439481 440653 HC_gene_7700_tx_15 1 - 439481 440653 . 2 416,705 0,468 -chrXIV 439481 441011 HC_gene_7700_tx_18 1 - 439481 441011 . 1 1531 0 -chrXIV 439553 439916 HC_gene_7700_tx_2 5 - 439553 439916 . 1 364 0 -chrXIV 439553 440045 HC_gene_7700_tx_5 24 - 439553 440045 . 1 493 0 -chrXIV 439553 440159 HC_gene_7700_tx_6 1 - 439553 440159 . 1 607 0 -chrXIV 439553 440368 HC_gene_7700_tx_9 9 - 439553 440368 . 1 816 0 -chrXIV 439553 440653 HC_gene_7700_tx_16 83 - 439553 440653 . 1 1101 0 -chrXIV 439553 440653 HC_gene_7700_tx_17 1 - 439553 440653 . 2 875,163 0,938 -chrXIV 439675 440211 LC_gene_7390_tx_1 1 + 439675 440211 . 1 537 0 -chrXIV 440778 441368 HC_gene_7391_tx_1 1 + 440778 441368 . 1 591 0 -chrXIV 440784 441368 HC_gene_7391_tx_2 4 + 440784 441368 . 1 585 0 -chrXIV 440937 441368 HC_gene_7391_tx_3 1 + 440937 441368 . 1 432 0 -chrXIV 440956 441368 HC_gene_7391_tx_4 3 + 440956 441368 . 1 413 0 -chrXIV 441118 441368 HC_gene_7391_tx_5 1 + 441118 441368 . 1 251 0 -chrXIV 441126 441368 HC_gene_7391_tx_6 1 + 441126 441368 . 1 243 0 -chrXIV 441132 441368 HC_gene_7391_tx_7 2 + 441132 441368 . 1 237 0 -chrXIV 441135 441368 HC_gene_7391_tx_8 1 + 441135 441368 . 1 234 0 -chrXIV 441146 441368 HC_gene_7391_tx_9 1 + 441146 441368 . 1 223 0 -chrXIV 441169 441853 HC_gene_7701_tx_1 3 - 441169 441853 . 1 685 0 -chrXIV 441169 442106 HC_gene_7701_tx_3 1 - 441169 442106 . 1 938 0 -chrXIV 441169 442218 HC_gene_7701_tx_4 1 - 441169 442218 . 1 1050 0 -chrXIV 441169 442350 HC_gene_7701_tx_5 1 - 441169 442350 . 1 1182 0 -chrXIV 441169 442423 HC_gene_7701_tx_6 1 - 441169 442423 . 1 1255 0 -chrXIV 441169 442471 HC_gene_7701_tx_7 1 - 441169 442471 . 1 1303 0 -chrXIV 441169 442472 HC_gene_7701_tx_8 2 - 441169 442472 . 1 1304 0 -chrXIV 441169 442486 HC_gene_7701_tx_9 1 - 441169 442486 . 1 1318 0 -chrXIV 441169 442491 HC_gene_7701_tx_10 13 - 441169 442491 . 1 1323 0 -chrXIV 441169 442491 HC_gene_7701_tx_11 1 - 441169 442491 . 2 898,328 0,995 -chrXIV 441169 442491 HC_gene_7701_tx_12 1 - 441169 442491 . 2 542,412 0,911 -chrXIV 441169 442497 HC_gene_7701_tx_13 1 - 441169 442497 . 1 1329 0 -chrXIV 441244 441853 HC_gene_7701_tx_2 3 - 441244 441853 . 1 610 0 -chrXIV 441244 442106 HC_gene_7701_tx_14 1 - 441244 442106 . 1 863 0 -chrXIV 441244 442491 HC_gene_7701_tx_15 11 - 441244 442491 . 1 1248 0 -chrXIV 441244 442491 HC_gene_7701_tx_16 1 - 441244 442491 . 2 507,693 0,555 -chrXIV 443024 443293 MC_gene_7392_tx_1 1 + 443024 443293 . 1 270 0 -chrXIV 443192 443811 HC_gene_7702_tx_1 170 - 443192 443811 . 1 620 0 -chrXIV 443192 444356 HC_gene_7702_tx_5 1024 - 443192 444356 . 2 635,185 0,980 -chrXIV 443192 444356 HC_gene_7702_tx_6 1 - 443192 444356 . 2 589,185 0,980 -chrXIV 443192 444356 HC_gene_7702_tx_7 50 - 443192 444356 . 1 1165 0 -chrXIV 443192 444356 HC_gene_7702_tx_8 1 - 443192 444356 . 3 123,432,185 0,203,980 -chrXIV 443192 444356 HC_gene_7702_tx_9 1 - 443192 444356 . 3 179,399,185 0,236,980 -chrXIV 443192 444356 HC_gene_7702_tx_10 1 - 443192 444356 . 2 169,174 0,991 -chrXIV 443192 444356 HC_gene_7702_tx_11 2 - 443192 444356 . 2 635,125 0,1040 -chrXIV 443192 444356 HC_gene_7702_tx_12 1 - 443192 444356 . 2 624,174 0,991 -chrXIV 443192 444356 HC_gene_7702_tx_13 1 - 443192 444356 . 2 624,183 0,982 -chrXIV 443192 444356 HC_gene_7702_tx_14 1 - 443192 444356 . 2 677,185 0,980 -chrXIV 443192 444356 HC_gene_7702_tx_15 1 - 443192 444356 . 2 513,109 0,1056 -chrXIV 443192 444356 HC_gene_7702_tx_16 1 - 443192 444356 . 2 635,158 0,1007 -chrXIV 443192 444356 HC_gene_7702_tx_17 1 - 443192 444356 . 2 635,196 0,969 -chrXIV 443192 444356 HC_gene_7702_tx_18 1 - 443192 444356 . 2 635,168 0,997 -chrXIV 443192 444356 HC_gene_7702_tx_19 1 - 443192 444356 . 2 624,185 0,980 -chrXIV 443192 444356 HC_gene_7702_tx_20 1 - 443192 444356 . 2 163,185 0,980 -chrXIV 443192 444356 HC_gene_7702_tx_21 2 - 443192 444356 . 2 635,175 0,990 -chrXIV 443192 444356 HC_gene_7702_tx_22 1 - 443192 444356 . 3 95,432,185 0,203,980 -chrXIV 443192 444356 HC_gene_7702_tx_23 1 - 443192 444356 . 3 72,513,185 0,122,980 -chrXIV 443192 444356 HC_gene_7702_tx_24 1 - 443192 444356 . 2 635,159 0,1006 -chrXIV 443192 444356 HC_gene_7702_tx_25 1 - 443192 444356 . 2 432,185 0,980 -chrXIV 443271 443811 HC_gene_7702_tx_2 1 - 443271 443811 . 1 541 0 -chrXIV 443272 444356 HC_gene_7702_tx_26 1 - 443272 444356 . 2 555,185 0,900 -chrXIV 443274 444356 HC_gene_7702_tx_27 1 - 443274 444356 . 2 544,185 0,898 -chrXIV 443274 444356 HC_gene_7702_tx_28 1 - 443274 444356 . 1 1083 0 -chrXIV 443274 444356 HC_gene_7702_tx_29 3 - 443274 444356 . 2 553,185 0,898 -chrXIV 443275 444356 HC_gene_7702_tx_30 1 - 443275 444356 . 1 1082 0 -chrXIV 443285 443811 HC_gene_7702_tx_3 2 - 443285 443811 . 1 527 0 -chrXIV 443285 444356 HC_gene_7702_tx_31 12 - 443285 444356 . 2 542,185 0,887 -chrXIV 443285 444356 HC_gene_7702_tx_32 1 - 443285 444356 . 1 1072 0 -chrXIV 443286 443811 HC_gene_7702_tx_4 2 - 443286 443811 . 1 526 0 -chrXIV 443286 444356 HC_gene_7702_tx_33 2 - 443286 444356 . 2 541,185 0,886 -chrXIV 443287 444356 HC_gene_7702_tx_34 1 - 443287 444356 . 2 540,185 0,885 -chrXIV 443297 444356 HC_gene_7702_tx_35 1 - 443297 444356 . 2 530,185 0,875 -chrXIV 443300 444356 HC_gene_7702_tx_36 11 - 443300 444356 . 2 527,185 0,872 -chrXIV 443300 444356 HC_gene_7702_tx_37 1 - 443300 444356 . 1 1057 0 -chrXIV 443301 444356 HC_gene_7702_tx_38 1 - 443301 444356 . 2 526,185 0,871 -chrXIV 443303 444356 HC_gene_7702_tx_39 2 - 443303 444356 . 2 524,185 0,869 -chrXIV 443304 444356 HC_gene_7702_tx_40 1 - 443304 444356 . 2 523,185 0,868 -chrXIV 443305 444356 HC_gene_7702_tx_41 4 - 443305 444356 . 2 522,185 0,867 -chrXIV 443306 444356 HC_gene_7702_tx_42 9 - 443306 444356 . 2 521,185 0,866 -chrXIV 443306 444356 HC_gene_7702_tx_43 1 - 443306 444356 . 1 1051 0 -chrXIV 444631 447051 HC_gene_7703_tx_1 1 - 444631 447051 . 1 2421 0 -chrXIV 444799 447051 HC_gene_7703_tx_2 4 - 444799 447051 . 1 2253 0 -chrXIV 444837 445650 HC_gene_7393_tx_1 4 + 444837 445650 . 1 814 0 -chrXIV 444837 445971 HC_gene_7393_tx_2 6 + 444837 445971 . 1 1135 0 -chrXIV 447337 449464 HC_gene_7394_tx_1 10 + 447337 449464 . 1 2128 0 -chrXIV 447337 449586 HC_gene_7394_tx_2 7 + 447337 449586 . 1 2250 0 -chrXIV 447579 449464 HC_gene_7394_tx_3 1 + 447579 449464 . 1 1886 0 -chrXIV 448268 449464 HC_gene_7394_tx_4 1 + 448268 449464 . 2 701,404 0,793 -chrXIV 448268 449586 HC_gene_7394_tx_5 3 + 448268 449586 . 1 1319 0 -chrXIV 448829 449464 HC_gene_7394_tx_6 3 + 448829 449464 . 1 636 0 -chrXIV 448829 449586 HC_gene_7394_tx_7 3 + 448829 449586 . 1 758 0 -chrXIV 449008 449464 HC_gene_7394_tx_8 5 + 449008 449464 . 1 457 0 -chrXIV 449008 449586 HC_gene_7394_tx_9 6 + 449008 449586 . 1 579 0 -chrXIV 449008 449586 HC_gene_7394_tx_10 1 + 449008 449586 . 2 332,121 0,458 -chrXIV 449410 450640 MC_gene_7704_tx_1 1 - 449410 450640 . 1 1231 0 -chrXIV 449810 450803 MC_gene_7395_tx_1 1 + 449810 450803 . 1 994 0 -chrXIV 450821 452295 MC_gene_7396_tx_1 1 + 450821 452295 . 1 1475 0 -chrXIV 450938 452013 LC_gene_7705_tx_1 1 - 450938 452013 . 1 1076 0 -chrXIV 451413 452259 MC_gene_7396_tx_2 1 + 451413 452259 . 1 847 0 -chrXIV 451482 452157 MC_gene_7396_tx_3 1 + 451482 452157 . 1 676 0 -chrXIV 452260 456223 HC_gene_7397_tx_1 6 + 452260 456223 . 1 3964 0 -chrXIV 452260 456223 HC_gene_7397_tx_2 1 + 452260 456223 . 2 3023,888 0,3076 -chrXIV 452260 456223 HC_gene_7397_tx_3 1 + 452260 456223 . 2 1756,1115 0,2849 -chrXIV 452260 456223 HC_gene_7397_tx_4 1 + 452260 456223 . 2 1816,1277 0,2687 -chrXIV 452260 456223 HC_gene_7397_tx_5 1 + 452260 456223 . 2 107,3510 0,454 -chrXIV 452260 456223 HC_gene_7397_tx_6 1 + 452260 456223 . 2 2577,1318 0,2646 -chrXIV 452260 456223 HC_gene_7397_tx_7 1 + 452260 456223 . 2 2577,1300 0,2664 -chrXIV 452260 456292 HC_gene_7397_tx_8 1 + 452260 456292 . 1 4033 0 -chrXIV 452260 456358 HC_gene_7397_tx_9 1 + 452260 456358 . 1 4099 0 -chrXIV 453000 456223 HC_gene_7397_tx_10 1 + 453000 456223 . 3 1064,179,1772 0,1185,1452 -chrXIV 453278 456223 HC_gene_7397_tx_11 4 + 453278 456223 . 1 2946 0 -chrXIV 453695 456223 HC_gene_7397_tx_12 3 + 453695 456223 . 1 2529 0 -chrXIV 453907 456223 HC_gene_7397_tx_13 1 + 453907 456223 . 1 2317 0 -chrXIV 454110 456223 HC_gene_7397_tx_14 1 + 454110 456223 . 2 277,1635 0,479 -chrXIV 454161 456223 HC_gene_7397_tx_15 3 + 454161 456223 . 1 2063 0 -chrXIV 454161 456223 HC_gene_7397_tx_16 1 + 454161 456223 . 2 900,892 0,1171 -chrXIV 454161 456292 HC_gene_7397_tx_17 1 + 454161 456292 . 1 2132 0 -chrXIV 454381 456223 HC_gene_7397_tx_18 2 + 454381 456223 . 1 1843 0 -chrXIV 454486 456223 HC_gene_7397_tx_19 2 + 454486 456223 . 1 1738 0 -chrXIV 454486 456358 HC_gene_7397_tx_20 1 + 454486 456358 . 1 1873 0 -chrXIV 454557 456223 HC_gene_7397_tx_21 14 + 454557 456223 . 1 1667 0 -chrXIV 454557 456223 HC_gene_7397_tx_22 1 + 454557 456223 . 2 477,983 0,684 -chrXIV 456420 457239 HC_gene_7398_tx_1 1 + 456420 457239 . 1 820 0 -chrXIV 456420 457241 HC_gene_7398_tx_2 1 + 456420 457241 . 1 822 0 -chrXIV 456420 457243 HC_gene_7398_tx_3 1 + 456420 457243 . 1 824 0 -chrXIV 456420 457245 HC_gene_7398_tx_4 1 + 456420 457245 . 1 826 0 -chrXIV 456420 457248 HC_gene_7398_tx_5 2 + 456420 457248 . 1 829 0 -chrXIV 456420 457249 HC_gene_7398_tx_6 1 + 456420 457249 . 1 830 0 -chrXIV 456420 457250 HC_gene_7398_tx_7 1 + 456420 457250 . 1 831 0 -chrXIV 456420 457251 HC_gene_7398_tx_8 1 + 456420 457251 . 1 832 0 -chrXIV 456420 457258 HC_gene_7398_tx_9 1 + 456420 457258 . 1 839 0 -chrXIV 456420 457277 HC_gene_7398_tx_10 3 + 456420 457277 . 1 858 0 -chrXIV 456420 457278 HC_gene_7398_tx_11 1 + 456420 457278 . 1 859 0 -chrXIV 456420 457279 HC_gene_7398_tx_12 1 + 456420 457279 . 1 860 0 -chrXIV 456420 457281 HC_gene_7398_tx_13 1 + 456420 457281 . 1 862 0 -chrXIV 456420 457287 HC_gene_7398_tx_14 1 + 456420 457287 . 1 868 0 -chrXIV 456420 457288 HC_gene_7398_tx_15 1 + 456420 457288 . 1 869 0 -chrXIV 456420 457291 HC_gene_7398_tx_16 1 + 456420 457291 . 1 872 0 -chrXIV 456420 457293 HC_gene_7398_tx_17 1 + 456420 457293 . 1 874 0 -chrXIV 456420 457296 HC_gene_7398_tx_18 1 + 456420 457296 . 1 877 0 -chrXIV 456420 457299 HC_gene_7398_tx_19 1 + 456420 457299 . 1 880 0 -chrXIV 456420 457301 HC_gene_7398_tx_20 6 + 456420 457301 . 1 882 0 -chrXIV 456420 457304 HC_gene_7398_tx_21 1 + 456420 457304 . 1 885 0 -chrXIV 456420 457309 HC_gene_7398_tx_22 4 + 456420 457309 . 1 890 0 -chrXIV 456420 457321 HC_gene_7398_tx_23 1 + 456420 457321 . 1 902 0 -chrXIV 456420 457526 HC_gene_7398_tx_24 35 + 456420 457526 . 1 1107 0 -chrXIV 457364 457685 MC_gene_7706_tx_1 1 - 457364 457685 . 1 322 0 -chrXIV 457631 462101 HC_gene_7399_tx_1 4 + 457631 462101 . 1 4471 0 -chrXIV 457631 462101 HC_gene_7399_tx_2 1 + 457631 462101 . 2 2191,2083 0,2388 -chrXIV 458566 462101 HC_gene_7399_tx_3 1 + 458566 462101 . 1 3536 0 -chrXIV 459149 459440 MC_gene_7707_tx_1 1 - 459149 459440 . 1 292 0 -chrXIV 459715 460164 HC_gene_7399_tx_4 2 + 459715 460164 . 1 450 0 -chrXIV 459715 460296 HC_gene_7399_tx_5 1 + 459715 460296 . 1 582 0 -chrXIV 459715 462101 HC_gene_7399_tx_6 5 + 459715 462101 . 1 2387 0 -chrXIV 459715 462351 HC_gene_7399_tx_7 1 + 459715 462351 . 2 789,722 0,1915 -chrXIV 459772 462351 HC_gene_7399_tx_8 1 + 459772 462351 . 1 2580 0 -chrXIV 460198 462101 HC_gene_7399_tx_9 4 + 460198 462101 . 1 1904 0 -chrXIV 460314 462101 HC_gene_7399_tx_10 8 + 460314 462101 . 1 1788 0 -chrXIV 460314 462351 HC_gene_7399_tx_11 1 + 460314 462351 . 1 2038 0 -chrXIV 460554 462101 HC_gene_7399_tx_12 4 + 460554 462101 . 1 1548 0 -chrXIV 460554 462351 HC_gene_7399_tx_13 1 + 460554 462351 . 1 1798 0 -chrXIV 460759 462101 HC_gene_7399_tx_14 5 + 460759 462101 . 1 1343 0 -chrXIV 460892 462351 HC_gene_7399_tx_15 1 + 460892 462351 . 1 1460 0 -chrXIV 460893 462101 HC_gene_7399_tx_16 12 + 460893 462101 . 1 1209 0 -chrXIV 460893 462351 HC_gene_7399_tx_17 2 + 460893 462351 . 1 1459 0 -chrXIV 460947 462101 HC_gene_7399_tx_18 5 + 460947 462101 . 1 1155 0 -chrXIV 460947 462351 HC_gene_7399_tx_19 1 + 460947 462351 . 1 1405 0 -chrXIV 461238 462101 HC_gene_7399_tx_20 22 + 461238 462101 . 1 864 0 -chrXIV 461238 462351 HC_gene_7399_tx_22 3 + 461238 462351 . 1 1114 0 -chrXIV 461349 462101 HC_gene_7399_tx_21 4 + 461349 462101 . 1 753 0 -chrXIV 461349 462351 HC_gene_7399_tx_23 1 + 461349 462351 . 1 1003 0 -chrXIV 461542 462351 HC_gene_7399_tx_24 1 + 461542 462351 . 1 810 0 -chrXIV 461554 462101 HC_gene_7399_tx_26 16 + 461554 462101 . 1 548 0 -chrXIV 461614 462101 HC_gene_7399_tx_27 8 + 461614 462101 . 1 488 0 -chrXIV 461614 462351 HC_gene_7399_tx_25 1 + 461614 462351 . 1 738 0 -chrXIV 462216 463864 MC_gene_7708_tx_1 1 - 462216 463864 . 1 1649 0 -chrXIV 462873 464986 MC_gene_7709_tx_1 1 - 462873 464986 . 1 2114 0 -chrXIV 464388 464651 HC_gene_7400_tx_1 1 + 464388 464651 . 1 264 0 -chrXIV 464708 465310 MC_gene_7710_tx_1 1 - 464708 465310 . 1 603 0 -chrXIV 465182 466141 HC_gene_7401_tx_1 3 + 465182 466141 . 1 960 0 -chrXIV 465265 466141 HC_gene_7401_tx_2 21 + 465265 466141 . 1 877 0 -chrXIV 465360 466141 HC_gene_7401_tx_3 9 + 465360 466141 . 1 782 0 -chrXIV 466031 466604 HC_gene_7711_tx_1 7 - 466031 466604 . 1 574 0 -chrXIV 466249 466688 HC_gene_7402_tx_1 1 + 466249 466688 . 1 440 0 -chrXIV 466249 466702 HC_gene_7402_tx_2 1 + 466249 466702 . 1 454 0 -chrXIV 466249 466703 HC_gene_7402_tx_3 1 + 466249 466703 . 1 455 0 -chrXIV 466249 466704 HC_gene_7402_tx_4 1 + 466249 466704 . 1 456 0 -chrXIV 466249 466709 HC_gene_7402_tx_5 1 + 466249 466709 . 1 461 0 -chrXIV 466249 466711 HC_gene_7402_tx_6 2 + 466249 466711 . 1 463 0 -chrXIV 466249 466713 HC_gene_7402_tx_7 1 + 466249 466713 . 1 465 0 -chrXIV 466249 466715 HC_gene_7402_tx_8 1 + 466249 466715 . 1 467 0 -chrXIV 466249 466718 HC_gene_7402_tx_9 1 + 466249 466718 . 1 470 0 -chrXIV 466249 466899 HC_gene_7402_tx_10 5 + 466249 466899 . 1 651 0 -chrXIV 466259 466899 HC_gene_7402_tx_11 1 + 466259 466899 . 1 641 0 -chrXIV 467470 467878 MC_gene_7403_tx_1 1 + 467470 467878 . 1 409 0 -chrXIV 468465 469924 HC_gene_7404_tx_1 8 + 468465 469924 . 1 1460 0 -chrXIV 468465 470060 HC_gene_7404_tx_2 4 + 468465 470060 . 1 1596 0 -chrXIV 468919 469924 HC_gene_7404_tx_3 12 + 468919 469924 . 1 1006 0 -chrXIV 468919 470060 HC_gene_7404_tx_4 3 + 468919 470060 . 1 1142 0 -chrXIV 469041 469924 HC_gene_7404_tx_5 13 + 469041 469924 . 1 884 0 -chrXIV 469041 470060 HC_gene_7404_tx_6 1 + 469041 470060 . 1 1020 0 -chrXIV 469041 470060 HC_gene_7404_tx_7 1 + 469041 470060 . 2 164,798 0,222 -chrXIV 469270 469924 HC_gene_7404_tx_8 12 + 469270 469924 . 1 655 0 -chrXIV 469270 470060 HC_gene_7404_tx_9 4 + 469270 470060 . 1 791 0 -chrXIV 469375 469924 HC_gene_7404_tx_10 23 + 469375 469924 . 1 550 0 -chrXIV 469375 470060 HC_gene_7404_tx_11 3 + 469375 470060 . 1 686 0 -chrXIV 469535 469924 HC_gene_7404_tx_12 24 + 469535 469924 . 1 390 0 -chrXIV 469535 470060 HC_gene_7404_tx_13 6 + 469535 470060 . 1 526 0 -chrXIV 469627 469924 HC_gene_7404_tx_15 6 + 469627 469924 . 1 298 0 -chrXIV 469627 470060 HC_gene_7404_tx_14 3 + 469627 470060 . 1 434 0 -chrXIV 469724 469924 HC_gene_7404_tx_16 6 + 469724 469924 . 1 201 0 -chrXIV 469724 470060 HC_gene_7404_tx_17 4 + 469724 470060 . 1 337 0 -chrXIV 469724 470145 HC_gene_7404_tx_18 1 + 469724 470145 . 1 422 0 -chrXIV 469813 470490 HC_gene_7712_tx_1 3 - 469813 470490 . 1 678 0 -chrXIV 469813 470579 HC_gene_7712_tx_2 3 - 469813 470579 . 1 767 0 -chrXIV 469813 470913 HC_gene_7712_tx_6 1 - 469813 470913 . 1 1101 0 -chrXIV 469813 471157 HC_gene_7712_tx_7 10 - 469813 471157 . 1 1345 0 -chrXIV 469879 470490 HC_gene_7712_tx_3 2 - 469879 470490 . 1 612 0 -chrXIV 469879 471157 HC_gene_7712_tx_8 1 - 469879 471157 . 1 1279 0 -chrXIV 469974 470490 HC_gene_7712_tx_4 19 - 469974 470490 . 1 517 0 -chrXIV 469974 470579 HC_gene_7712_tx_5 17 - 469974 470579 . 1 606 0 -chrXIV 469974 470821 HC_gene_7712_tx_9 10 - 469974 470821 . 1 848 0 -chrXIV 469974 470913 HC_gene_7712_tx_10 10 - 469974 470913 . 1 940 0 -chrXIV 469974 471157 HC_gene_7712_tx_11 92 - 469974 471157 . 1 1184 0 -chrXIV 471366 473115 HC_gene_7405_tx_1 21 + 471366 473115 . 1 1750 0 -chrXIV 472582 473115 HC_gene_7405_tx_2 4 + 472582 473115 . 1 534 0 -chrXIV 472937 473135 MC_gene_7713_tx_1 1 - 472937 473135 . 1 199 0 -chrXIV 472998 473553 MC_gene_7714_tx_1 1 - 472998 473553 . 1 556 0 -chrXIV 473358 476097 HC_gene_7406_tx_1 7 + 473358 476097 . 1 2740 0 -chrXIV 473358 476097 HC_gene_7406_tx_2 1 + 473358 476097 . 2 2172,525 0,2215 -chrXIV 473358 476163 HC_gene_7406_tx_3 1 + 473358 476163 . 1 2806 0 -chrXIV 476000 476414 HC_gene_7715_tx_1 13 - 476000 476414 . 1 415 0 -chrXIV 476000 476523 HC_gene_7715_tx_3 15 - 476000 476523 . 1 524 0 -chrXIV 476000 476659 HC_gene_7715_tx_4 128 - 476000 476659 . 1 660 0 -chrXIV 476068 476414 HC_gene_7715_tx_2 3 - 476068 476414 . 1 347 0 -chrXIV 476068 476659 HC_gene_7715_tx_5 7 - 476068 476659 . 1 592 0 -chrXIV 476832 477041 HC_gene_7716_tx_1 6 - 476832 477041 . 1 210 0 -chrXIV 476832 477186 HC_gene_7716_tx_2 7 - 476832 477186 . 1 355 0 -chrXIV 476832 478035 HC_gene_7716_tx_3 12 - 476832 478035 . 1 1204 0 -chrXIV 476832 478185 HC_gene_7716_tx_4 47 - 476832 478185 . 1 1354 0 -chrXIV 477038 478206 LC_gene_7407_tx_1 1 + 477038 478206 . 2 699,415 0,754 -chrXIV 478387 478764 HC_gene_7717_tx_1 82 - 478387 478764 . 1 378 0 -chrXIV 478387 479206 HC_gene_7717_tx_2 964 - 478387 479206 . 1 820 0 -chrXIV 478387 479358 HC_gene_7717_tx_3 7 - 478387 479358 . 1 972 0 -chrXIV 478531 479120 LC_gene_7408_tx_1 1 + 478531 479120 . 1 590 0 -chrXIV 479419 480874 MC_gene_7718_tx_1 1 - 479419 480874 . 1 1456 0 -chrXIV 479499 481081 HC_gene_7409_tx_1 2 + 479499 481081 . 1 1583 0 -chrXIV 479499 481144 HC_gene_7409_tx_2 2 + 479499 481144 . 1 1646 0 -chrXIV 479499 481279 HC_gene_7409_tx_3 1 + 479499 481279 . 1 1781 0 -chrXIV 479585 481081 HC_gene_7409_tx_4 1 + 479585 481081 . 1 1497 0 -chrXIV 479597 481081 HC_gene_7409_tx_5 1 + 479597 481081 . 1 1485 0 -chrXIV 479758 481081 HC_gene_7409_tx_6 12 + 479758 481081 . 1 1324 0 -chrXIV 479758 481144 HC_gene_7409_tx_7 13 + 479758 481144 . 1 1387 0 -chrXIV 479758 481144 HC_gene_7409_tx_8 1 + 479758 481144 . 2 206,1130 0,257 -chrXIV 479758 481279 HC_gene_7409_tx_9 18 + 479758 481279 . 1 1522 0 -chrXIV 479771 481279 HC_gene_7409_tx_10 1 + 479771 481279 . 1 1509 0 -chrXIV 479772 481081 HC_gene_7409_tx_11 1 + 479772 481081 . 1 1310 0 -chrXIV 479778 481279 HC_gene_7409_tx_12 1 + 479778 481279 . 1 1502 0 -chrXIV 479844 481144 HC_gene_7409_tx_13 1 + 479844 481144 . 1 1301 0 -chrXIV 479844 481279 HC_gene_7409_tx_14 2 + 479844 481279 . 1 1436 0 -chrXIV 479919 481081 HC_gene_7409_tx_15 1 + 479919 481081 . 1 1163 0 -chrXIV 479919 481144 HC_gene_7409_tx_16 1 + 479919 481144 . 1 1226 0 -chrXIV 479919 481279 HC_gene_7409_tx_17 1 + 479919 481279 . 1 1361 0 -chrXIV 479919 481279 HC_gene_7409_tx_18 1 + 479919 481279 . 2 999,301 0,1060 -chrXIV 481050 481904 LC_gene_7719_tx_1 1 - 481050 481904 . 1 855 0 -chrXIV 481107 483021 HC_gene_7410_tx_1 1 + 481107 483021 . 1 1915 0 -chrXIV 481281 483021 HC_gene_7410_tx_2 19 + 481281 483021 . 1 1741 0 -chrXIV 481281 483021 HC_gene_7410_tx_3 1 + 481281 483021 . 2 708,750 0,991 -chrXIV 481281 483021 HC_gene_7410_tx_4 1 + 481281 483021 . 2 977,694 0,1047 -chrXIV 481818 483021 HC_gene_7410_tx_5 1 + 481818 483021 . 1 1204 0 -chrXIV 482445 483021 HC_gene_7410_tx_6 5 + 482445 483021 . 1 577 0 -chrXIV 482866 483112 HC_gene_7720_tx_1 7 - 482866 483112 . 1 247 0 -chrXIV 483297 485409 HC_gene_7411_tx_1 3 + 483297 485409 . 1 2113 0 -chrXIV 483405 485409 HC_gene_7411_tx_2 1 + 483405 485409 . 3 623,222,645 0,867,1360 -chrXIV 483554 485409 HC_gene_7411_tx_3 6 + 483554 485409 . 1 1856 0 -chrXIV 483708 485409 HC_gene_7411_tx_4 2 + 483708 485409 . 1 1702 0 -chrXIV 483803 485231 LC_gene_7721_tx_1 1 - 483803 485231 . 1 1429 0 -chrXIV 485529 486588 HC_gene_7412_tx_1 81 + 485529 486588 . 1 1060 0 -chrXIV 485529 486747 HC_gene_7412_tx_2 2 + 485529 486747 . 1 1219 0 -chrXIV 486401 487335 HC_gene_7722_tx_1 1 - 486401 487335 . 1 935 0 -chrXIV 486401 488171 HC_gene_7722_tx_2 4 - 486401 488171 . 1 1771 0 -chrXIV 486608 487335 HC_gene_7722_tx_5 3 - 486608 487335 . 1 728 0 -chrXIV 486608 487500 HC_gene_7722_tx_6 3 - 486608 487500 . 1 893 0 -chrXIV 486608 488171 HC_gene_7722_tx_3 26 - 486608 488171 . 1 1564 0 -chrXIV 486700 487335 HC_gene_7722_tx_7 1 - 486700 487335 . 1 636 0 -chrXIV 486700 488171 HC_gene_7722_tx_4 4 - 486700 488171 . 1 1472 0 -chrXIV 486716 487901 LC_gene_7413_tx_1 1 + 486716 487901 . 1 1186 0 -chrXIV 488381 490215 HC_gene_7414_tx_1 12 + 488381 490215 . 1 1835 0 -chrXIV 488381 490215 HC_gene_7414_tx_2 1 + 488381 490215 . 2 860,852 0,983 -chrXIV 488720 490110 LC_gene_7723_tx_1 1 - 488720 490110 . 1 1391 0 -chrXIV 488823 490215 HC_gene_7414_tx_3 4 + 488823 490215 . 1 1393 0 -chrXIV 489703 490215 HC_gene_7414_tx_4 6 + 489703 490215 . 1 513 0 -chrXIV 490173 491239 HC_gene_7724_tx_1 4 - 490173 491239 . 1 1067 0 -chrXIV 490295 491324 HC_gene_7415_tx_1 30 + 490295 491324 . 1 1030 0 -chrXIV 490886 491324 HC_gene_7415_tx_2 2 + 490886 491324 . 1 439 0 -chrXIV 491491 493128 HC_gene_7416_tx_1 196 + 491491 493128 . 1 1638 0 -chrXIV 491491 493128 HC_gene_7416_tx_2 1 + 491491 493128 . 2 921,615 0,1023 -chrXIV 491491 493128 HC_gene_7416_tx_3 1 + 491491 493128 . 2 239,893 0,745 -chrXIV 491491 493128 HC_gene_7416_tx_4 1 + 491491 493128 . 2 741,822 0,816 -chrXIV 491491 493128 HC_gene_7416_tx_5 1 + 491491 493128 . 2 771,810 0,828 -chrXIV 491491 493128 HC_gene_7416_tx_6 1 + 491491 493128 . 2 458,549 0,1089 -chrXIV 492035 493014 LC_gene_7725_tx_1 1 - 492035 493014 . 1 980 0 -chrXIV 493313 493686 HC_gene_7417_tx_1 530 + 493313 493686 . 1 374 0 -chrXIV 493424 494203 HC_gene_7726_tx_1 1 - 493424 494203 . 1 780 0 -chrXIV 493424 495017 HC_gene_7726_tx_2 1 - 493424 495017 . 2 1101,44 0,1550 -chrXIV 493606 494203 HC_gene_7726_tx_46 37 - 493606 494203 . 1 598 0 -chrXIV 493606 495017 HC_gene_7726_tx_3 8 - 493606 495017 . 1 1412 0 -chrXIV 493606 495017 HC_gene_7726_tx_4 11 - 493606 495017 . 2 919,44 0,1368 -chrXIV 493761 494207 LC_gene_7418_tx_1 1 + 493761 494207 . 1 447 0 -chrXIV 493774 494203 HC_gene_7726_tx_47 90 - 493774 494203 . 1 430 0 -chrXIV 493774 495017 HC_gene_7726_tx_5 25 - 493774 495017 . 2 751,44 0,1200 -chrXIV 493776 494203 HC_gene_7726_tx_48 1 - 493776 494203 . 1 428 0 -chrXIV 493777 494203 HC_gene_7726_tx_49 6 - 493777 494203 . 1 427 0 -chrXIV 493778 494203 HC_gene_7726_tx_50 24 - 493778 494203 . 1 426 0 -chrXIV 493778 495017 HC_gene_7726_tx_6 3 - 493778 495017 . 2 747,44 0,1196 -chrXIV 493778 495017 HC_gene_7726_tx_7 1 - 493778 495017 . 1 1240 0 -chrXIV 493779 494203 HC_gene_7726_tx_51 16 - 493779 494203 . 1 425 0 -chrXIV 493779 495017 HC_gene_7726_tx_8 1 - 493779 495017 . 1 1239 0 -chrXIV 493779 495017 HC_gene_7726_tx_9 6 - 493779 495017 . 2 746,44 0,1195 -chrXIV 493780 494203 HC_gene_7726_tx_52 21 - 493780 494203 . 1 424 0 -chrXIV 493780 495017 HC_gene_7726_tx_10 7 - 493780 495017 . 2 745,44 0,1194 -chrXIV 493782 494203 HC_gene_7726_tx_53 2 - 493782 494203 . 1 422 0 -chrXIV 493783 494203 HC_gene_7726_tx_54 7 - 493783 494203 . 1 421 0 -chrXIV 493783 495017 HC_gene_7726_tx_11 2 - 493783 495017 . 2 742,44 0,1191 -chrXIV 493784 494203 HC_gene_7726_tx_55 25 - 493784 494203 . 1 420 0 -chrXIV 493784 495017 HC_gene_7726_tx_12 4 - 493784 495017 . 2 741,44 0,1190 -chrXIV 493785 494203 HC_gene_7726_tx_56 125 - 493785 494203 . 1 419 0 -chrXIV 493785 495017 HC_gene_7726_tx_13 40 - 493785 495017 . 2 740,44 0,1189 -chrXIV 493785 495017 HC_gene_7726_tx_14 1 - 493785 495017 . 2 735,44 0,1189 -chrXIV 493785 495017 HC_gene_7726_tx_15 1 - 493785 495017 . 1 1233 0 -chrXIV 493786 494203 HC_gene_7726_tx_57 42 - 493786 494203 . 1 418 0 -chrXIV 493786 495017 HC_gene_7726_tx_16 10 - 493786 495017 . 2 739,44 0,1188 -chrXIV 493787 494203 HC_gene_7726_tx_58 36 - 493787 494203 . 1 417 0 -chrXIV 493787 495017 HC_gene_7726_tx_17 13 - 493787 495017 . 2 738,44 0,1187 -chrXIV 493787 495017 HC_gene_7726_tx_18 1 - 493787 495017 . 2 704,48 0,1183 -chrXIV 493788 494203 HC_gene_7726_tx_59 15 - 493788 494203 . 1 416 0 -chrXIV 493788 495017 HC_gene_7726_tx_19 5 - 493788 495017 . 2 737,44 0,1186 -chrXIV 493789 494203 HC_gene_7726_tx_60 20 - 493789 494203 . 1 415 0 -chrXIV 493789 495017 HC_gene_7726_tx_20 9 - 493789 495017 . 2 736,44 0,1185 -chrXIV 493790 494203 HC_gene_7726_tx_61 1 - 493790 494203 . 1 414 0 -chrXIV 493791 494203 HC_gene_7726_tx_62 34 - 493791 494203 . 1 413 0 -chrXIV 493791 495017 HC_gene_7726_tx_21 3 - 493791 495017 . 1 1227 0 -chrXIV 493791 495017 HC_gene_7726_tx_22 16 - 493791 495017 . 2 734,44 0,1183 -chrXIV 493792 494203 HC_gene_7726_tx_63 8 - 493792 494203 . 1 412 0 -chrXIV 493792 495017 HC_gene_7726_tx_23 1 - 493792 495017 . 3 43,608,44 0,125,1182 -chrXIV 493792 495017 HC_gene_7726_tx_24 3 - 493792 495017 . 2 733,44 0,1182 -chrXIV 493792 495017 HC_gene_7726_tx_25 1 - 493792 495017 . 3 43,320,44 0,413,1182 -chrXIV 493793 494203 HC_gene_7726_tx_64 22 - 493793 494203 . 1 411 0 -chrXIV 493793 495017 HC_gene_7726_tx_26 8 - 493793 495017 . 2 732,44 0,1181 -chrXIV 493794 494203 HC_gene_7726_tx_65 65 - 493794 494203 . 1 410 0 -chrXIV 493794 494203 HC_gene_7726_tx_66 1 - 493794 494203 . 2 88,266 0,144 -chrXIV 493794 495017 HC_gene_7726_tx_27 23 - 493794 495017 . 2 731,44 0,1180 -chrXIV 493796 494203 HC_gene_7726_tx_67 48 - 493796 494203 . 1 408 0 -chrXIV 493796 495017 HC_gene_7726_tx_28 1 - 493796 495017 . 1 1222 0 -chrXIV 493796 495017 HC_gene_7726_tx_29 13 - 493796 495017 . 2 729,44 0,1178 -chrXIV 493797 494203 HC_gene_7726_tx_68 49 - 493797 494203 . 1 407 0 -chrXIV 493797 495017 HC_gene_7726_tx_30 2 - 493797 495017 . 1 1221 0 -chrXIV 493797 495017 HC_gene_7726_tx_31 11 - 493797 495017 . 2 728,44 0,1177 -chrXIV 493797 495017 HC_gene_7726_tx_32 1 - 493797 495017 . 3 38,597,44 0,131,1177 -chrXIV 493798 494203 HC_gene_7726_tx_69 157 - 493798 494203 . 1 406 0 -chrXIV 493798 494525 HC_gene_7726_tx_77 1 - 493798 494525 . 2 422,229 0,499 -chrXIV 493798 495017 HC_gene_7726_tx_33 3 - 493798 495017 . 1 1220 0 -chrXIV 493798 495017 HC_gene_7726_tx_34 1 - 493798 495017 . 2 710,48 0,1172 -chrXIV 493798 495017 HC_gene_7726_tx_35 45 - 493798 495017 . 2 727,44 0,1176 -chrXIV 493799 494203 HC_gene_7726_tx_70 7 - 493799 494203 . 1 405 0 -chrXIV 493799 495017 HC_gene_7726_tx_36 4 - 493799 495017 . 2 726,44 0,1175 -chrXIV 493799 495017 HC_gene_7726_tx_37 1 - 493799 495017 . 1 1219 0 -chrXIV 493800 494203 HC_gene_7726_tx_71 12 - 493800 494203 . 1 404 0 -chrXIV 493800 494203 HC_gene_7726_tx_72 1 - 493800 494203 . 2 211,131 0,273 -chrXIV 493800 495017 HC_gene_7726_tx_38 1 - 493800 495017 . 1 1218 0 -chrXIV 493800 495017 HC_gene_7726_tx_39 2 - 493800 495017 . 2 725,44 0,1174 -chrXIV 493801 494203 HC_gene_7726_tx_73 29 - 493801 494203 . 1 403 0 -chrXIV 493801 495017 HC_gene_7726_tx_40 5 - 493801 495017 . 2 724,44 0,1173 -chrXIV 493802 494203 HC_gene_7726_tx_74 42 - 493802 494203 . 1 402 0 -chrXIV 493802 495017 HC_gene_7726_tx_41 12 - 493802 495017 . 2 723,44 0,1172 -chrXIV 493802 495017 HC_gene_7726_tx_42 1 - 493802 495017 . 2 723,48 0,1168 -chrXIV 493803 494203 HC_gene_7726_tx_75 62 - 493803 494203 . 1 401 0 -chrXIV 493803 495017 HC_gene_7726_tx_43 2 - 493803 495017 . 1 1215 0 -chrXIV 493803 495017 HC_gene_7726_tx_44 20 - 493803 495017 . 2 722,44 0,1171 -chrXIV 493804 494203 HC_gene_7726_tx_76 16 - 493804 494203 . 1 400 0 -chrXIV 493804 495017 HC_gene_7726_tx_45 6 - 493804 495017 . 2 721,44 0,1170 -chrXIV 495411 495660 MC_gene_7419_tx_1 1 + 495411 495660 . 1 250 0 -chrXIV 495530 496174 HC_gene_7727_tx_1 6 - 495530 496174 . 1 645 0 -chrXIV 495530 496815 HC_gene_7727_tx_2 3 - 495530 496815 . 1 1286 0 -chrXIV 495530 497536 HC_gene_7727_tx_3 1 - 495530 497536 . 1 2007 0 -chrXIV 495530 498469 HC_gene_7727_tx_4 3 - 495530 498469 . 1 2940 0 -chrXIV 499647 500486 HC_gene_7420_tx_1 933 + 499647 500486 . 1 840 0 -chrXIV 500304 500718 MC_gene_7728_tx_1 1 - 500304 500718 . 1 415 0 -chrXIV 500854 502838 HC_gene_7729_tx_1 1 - 500854 502838 . 1 1985 0 -chrXIV 500931 501194 HC_gene_7421_tx_1 2 + 500931 501194 . 1 264 0 -chrXIV 500972 502838 HC_gene_7729_tx_2 1 - 500972 502838 . 1 1867 0 -chrXIV 501484 502974 HC_gene_7422_tx_1 43 + 501484 502974 . 1 1491 0 -chrXIV 501484 503170 HC_gene_7422_tx_2 1 + 501484 503170 . 1 1687 0 -chrXIV 501610 502974 HC_gene_7422_tx_3 32 + 501610 502974 . 1 1365 0 -chrXIV 502287 502974 HC_gene_7422_tx_4 54 + 502287 502974 . 1 688 0 -chrXIV 502581 502974 HC_gene_7422_tx_5 106 + 502581 502974 . 1 394 0 -chrXIV 502581 503170 HC_gene_7422_tx_6 1 + 502581 503170 . 1 590 0 -chrXIV 502581 503608 HC_gene_7422_tx_7 1 + 502581 503608 . 1 1028 0 -chrXIV 502715 502974 HC_gene_7422_tx_8 37 + 502715 502974 . 1 260 0 -chrXIV 502715 503170 HC_gene_7422_tx_9 1 + 502715 503170 . 1 456 0 -chrXIV 503580 504026 LC_gene_7730_tx_1 1 - 503580 504026 . 1 447 0 -chrXIV 503630 505667 HC_gene_7423_tx_1 23 + 503630 505667 . 1 2038 0 -chrXIV 503630 505667 HC_gene_7423_tx_2 1 + 503630 505667 . 2 1195,755 0,1283 -chrXIV 503630 505667 HC_gene_7423_tx_3 1 + 503630 505667 . 2 691,1024 0,1014 -chrXIV 504480 505667 HC_gene_7423_tx_4 17 + 504480 505667 . 1 1188 0 -chrXIV 504480 505667 HC_gene_7423_tx_5 1 + 504480 505667 . 2 134,813 0,375 -chrXIV 504888 505667 HC_gene_7423_tx_6 18 + 504888 505667 . 1 780 0 -chrXIV 504975 505667 HC_gene_7423_tx_7 9 + 504975 505667 . 1 693 0 -chrXIV 505499 506199 HC_gene_7731_tx_1 2 - 505499 506199 . 1 701 0 -chrXIV 505499 506544 HC_gene_7731_tx_2 1 - 505499 506544 . 1 1046 0 -chrXIV 505499 506647 HC_gene_7731_tx_3 1 - 505499 506647 . 1 1149 0 -chrXIV 505499 506854 HC_gene_7731_tx_4 1 - 505499 506854 . 1 1356 0 -chrXIV 505499 507290 HC_gene_7731_tx_11 2 - 505499 507290 . 1 1792 0 -chrXIV 505721 506199 HC_gene_7731_tx_28 168 - 505721 506199 . 1 479 0 -chrXIV 505721 506199 HC_gene_7731_tx_29 1 - 505721 506199 . 2 288,145 0,334 -chrXIV 505721 506397 HC_gene_7731_tx_5 52 - 505721 506397 . 1 677 0 -chrXIV 505721 506544 HC_gene_7731_tx_6 30 - 505721 506544 . 1 824 0 -chrXIV 505721 506544 HC_gene_7731_tx_7 1 - 505721 506544 . 2 656,114 0,710 -chrXIV 505721 506647 HC_gene_7731_tx_8 104 - 505721 506647 . 1 927 0 -chrXIV 505721 506761 HC_gene_7731_tx_9 8 - 505721 506761 . 1 1041 0 -chrXIV 505721 506854 HC_gene_7731_tx_10 44 - 505721 506854 . 1 1134 0 -chrXIV 505721 507143 HC_gene_7731_tx_12 31 - 505721 507143 . 1 1423 0 -chrXIV 505721 507143 HC_gene_7731_tx_13 1 - 505721 507143 . 2 479,844 0,579 -chrXIV 505721 507143 HC_gene_7731_tx_14 1 - 505721 507143 . 2 932,327 0,1096 -chrXIV 505721 507290 HC_gene_7731_tx_15 387 - 505721 507290 . 1 1570 0 -chrXIV 505721 507290 HC_gene_7731_tx_16 1 - 505721 507290 . 2 52,1391 0,179 -chrXIV 505721 507290 HC_gene_7731_tx_17 1 - 505721 507290 . 2 95,1380 0,190 -chrXIV 505721 507290 HC_gene_7731_tx_18 1 - 505721 507290 . 2 170,1355 0,215 -chrXIV 505721 507290 HC_gene_7731_tx_19 1 - 505721 507290 . 2 495,991 0,579 -chrXIV 505721 507290 HC_gene_7731_tx_20 1 - 505721 507290 . 2 102,1391 0,179 -chrXIV 505721 507290 HC_gene_7731_tx_21 1 - 505721 507290 . 2 739,118 0,1452 -chrXIV 505721 507290 HC_gene_7731_tx_22 1 - 505721 507290 . 2 971,464 0,1106 -chrXIV 505721 507290 HC_gene_7731_tx_23 1 - 505721 507290 . 2 626,872 0,698 -chrXIV 505721 507290 HC_gene_7731_tx_24 1 - 505721 507290 . 2 578,926 0,644 -chrXIV 505721 507290 HC_gene_7731_tx_25 1 - 505721 507290 . 2 78,1427 0,143 -chrXIV 505721 507290 HC_gene_7731_tx_26 1 - 505721 507290 . 2 626,893 0,677 -chrXIV 505721 507290 HC_gene_7731_tx_27 1 - 505721 507290 . 2 115,1394 0,176 -chrXIV 507643 508747 HC_gene_7424_tx_1 7 + 507643 508747 . 1 1105 0 -chrXIV 507795 508747 HC_gene_7424_tx_2 18 + 507795 508747 . 1 953 0 -chrXIV 508123 508747 HC_gene_7424_tx_3 7 + 508123 508747 . 1 625 0 -chrXIV 508473 510242 HC_gene_7732_tx_1 5 - 508473 510242 . 1 1770 0 -chrXIV 508570 510242 HC_gene_7732_tx_2 1 - 508570 510242 . 2 63,802 0,871 -chrXIV 508660 510242 HC_gene_7732_tx_3 35 - 508660 510242 . 1 1583 0 -chrXIV 510500 512508 HC_gene_7425_tx_1 79 + 510500 512508 . 1 2009 0 -chrXIV 510500 512508 HC_gene_7425_tx_2 1 + 510500 512508 . 2 1100,813 0,1196 -chrXIV 510500 512508 HC_gene_7425_tx_3 1 + 510500 512508 . 2 1060,838 0,1171 -chrXIV 510500 512508 HC_gene_7425_tx_4 1 + 510500 512508 . 2 1103,782 0,1227 -chrXIV 510500 512508 HC_gene_7425_tx_5 1 + 510500 512508 . 2 1100,841 0,1168 -chrXIV 510500 512508 HC_gene_7425_tx_6 1 + 510500 512508 . 2 1109,824 0,1185 -chrXIV 510500 512508 HC_gene_7425_tx_7 1 + 510500 512508 . 2 1013,900 0,1109 -chrXIV 510500 512508 HC_gene_7425_tx_8 1 + 510500 512508 . 2 1060,887 0,1122 -chrXIV 510500 512508 HC_gene_7425_tx_9 1 + 510500 512508 . 2 1133,796 0,1213 -chrXIV 510500 512508 HC_gene_7425_tx_10 1 + 510500 512508 . 2 730,1223 0,786 -chrXIV 510500 512508 HC_gene_7425_tx_11 1 + 510500 512508 . 2 811,525 0,1484 -chrXIV 510591 512508 HC_gene_7425_tx_12 12 + 510591 512508 . 1 1918 0 -chrXIV 510727 512508 HC_gene_7425_tx_13 16 + 510727 512508 . 1 1782 0 -chrXIV 510898 512508 HC_gene_7425_tx_14 4 + 510898 512508 . 1 1611 0 -chrXIV 511277 512508 HC_gene_7425_tx_15 4 + 511277 512508 . 1 1232 0 -chrXIV 512558 512799 HC_gene_7733_tx_1 11 - 512558 512799 . 1 242 0 -chrXIV 512558 513578 HC_gene_7733_tx_2 15 - 512558 513578 . 1 1021 0 -chrXIV 512558 513894 HC_gene_7733_tx_4 4 - 512558 513894 . 1 1337 0 -chrXIV 512558 513965 HC_gene_7733_tx_5 8 - 512558 513965 . 1 1408 0 -chrXIV 512558 513965 HC_gene_7733_tx_6 1 - 512558 513965 . 2 1107,253 0,1155 -chrXIV 512558 514449 HC_gene_7733_tx_8 3 - 512558 514449 . 1 1892 0 -chrXIV 512558 514952 HC_gene_7733_tx_9 15 - 512558 514952 . 1 2395 0 -chrXIV 512558 514952 HC_gene_7733_tx_10 1 - 512558 514952 . 2 1412,742 0,1653 -chrXIV 512719 513578 HC_gene_7733_tx_3 2 - 512719 513578 . 1 860 0 -chrXIV 512719 513894 HC_gene_7733_tx_7 1 - 512719 513894 . 1 1176 0 -chrXIV 512719 514952 HC_gene_7733_tx_11 1 - 512719 514952 . 1 2234 0 -chrXIV 515171 516185 HC_gene_7734_tx_1 1 - 515171 516185 . 1 1015 0 -chrXIV 515180 516093 HC_gene_7426_tx_1 11 + 515180 516093 . 1 914 0 -chrXIV 515346 516301 HC_gene_7735_tx_1 2 - 515346 516301 . 1 956 0 -chrXIV 515346 516781 HC_gene_7735_tx_2 3 - 515346 516781 . 1 1436 0 -chrXIV 515656 516185 HC_gene_7735_tx_3 11 - 515656 516185 . 1 530 0 -chrXIV 515656 516301 HC_gene_7735_tx_4 10 - 515656 516301 . 1 646 0 -chrXIV 515656 516379 HC_gene_7735_tx_5 4 - 515656 516379 . 1 724 0 -chrXIV 515656 516781 HC_gene_7735_tx_6 37 - 515656 516781 . 1 1126 0 -chrXIV 515724 516781 HC_gene_7735_tx_7 2 - 515724 516781 . 1 1058 0 -chrXIV 517153 518012 HC_gene_7427_tx_1 142 + 517153 518012 . 1 860 0 -chrXIV 517153 518012 HC_gene_7427_tx_2 1 + 517153 518012 . 2 144,656 0,204 -chrXIV 517153 518012 HC_gene_7427_tx_3 1 + 517153 518012 . 2 759,51 0,809 -chrXIV 517153 518108 HC_gene_7427_tx_4 1 + 517153 518108 . 1 956 0 -chrXIV 517387 518012 HC_gene_7427_tx_5 11 + 517387 518012 . 1 626 0 -chrXIV 517571 518012 HC_gene_7427_tx_6 16 + 517571 518012 . 1 442 0 -chrXIV 517932 518391 HC_gene_7736_tx_1 124 - 517932 518391 . 1 460 0 -chrXIV 517932 518532 HC_gene_7736_tx_2 202 - 517932 518532 . 1 601 0 -chrXIV 517932 518637 HC_gene_7736_tx_3 179 - 517932 518637 . 1 706 0 -chrXIV 517932 518885 HC_gene_7736_tx_4 1472 - 517932 518885 . 1 954 0 -chrXIV 517932 519146 HC_gene_7736_tx_5 8 - 517932 519146 . 1 1215 0 -chrXIV 519282 520160 MC_gene_7737_tx_1 1 - 519282 520160 . 1 879 0 -chrXIV 519705 525022 MC_gene_7428_tx_1 1 + 519705 525022 . 1 5318 0 -chrXIV 520511 525048 MC_gene_7428_tx_2 1 + 520511 525048 . 1 4538 0 -chrXIV 521565 524967 MC_gene_7428_tx_3 1 + 521565 524967 . 1 3403 0 -chrXIV 522191 525019 MC_gene_7428_tx_4 1 + 522191 525019 . 1 2829 0 -chrXIV 523355 525601 MC_gene_7429_tx_1 1 + 523355 525601 . 1 2247 0 -chrXIV 523603 525066 MC_gene_7429_tx_2 1 + 523603 525066 . 1 1464 0 -chrXIV 524713 525320 LC_gene_7738_tx_1 1 - 524713 525320 . 1 608 0 -chrXIV 525528 525824 HC_gene_7739_tx_1 2 - 525528 525824 . 1 297 0 -chrXIV 526029 529809 HC_gene_7430_tx_1 1 + 526029 529809 . 1 3781 0 -chrXIV 526029 529824 HC_gene_7430_tx_2 1 + 526029 529824 . 1 3796 0 -chrXIV 526029 529831 HC_gene_7430_tx_3 1 + 526029 529831 . 2 299,2745 0,1058 -chrXIV 526052 529845 HC_gene_7430_tx_4 1 + 526052 529845 . 1 3794 0 -chrXIV 526062 529835 HC_gene_7430_tx_5 1 + 526062 529835 . 1 3774 0 -chrXIV 527430 529539 MC_gene_7740_tx_1 1 - 527430 529539 . 1 2110 0 -chrXIV 529748 531460 LC_gene_7741_tx_1 1 - 529748 531460 . 1 1713 0 -chrXIV 529831 531539 HC_gene_7431_tx_1 18 + 529831 531539 . 1 1709 0 -chrXIV 529831 531664 HC_gene_7431_tx_2 3 + 529831 531664 . 1 1834 0 -chrXIV 530306 531539 HC_gene_7431_tx_3 6 + 530306 531539 . 1 1234 0 -chrXIV 531613 532519 MC_gene_7742_tx_1 1 - 531613 532519 . 1 907 0 -chrXIV 531690 532444 HC_gene_7432_tx_1 261 + 531690 532444 . 1 755 0 -chrXIV 531839 532444 HC_gene_7432_tx_2 23 + 531839 532444 . 1 606 0 -chrXIV 531994 532444 HC_gene_7432_tx_3 23 + 531994 532444 . 1 451 0 -chrXIV 532072 532444 HC_gene_7432_tx_4 18 + 532072 532444 . 1 373 0 -chrXIV 532652 533913 HC_gene_7433_tx_1 20 + 532652 533913 . 1 1262 0 -chrXIV 532652 534093 HC_gene_7433_tx_2 16 + 532652 534093 . 1 1442 0 -chrXIV 534009 534780 HC_gene_7743_tx_1 8 - 534009 534780 . 1 772 0 -chrXIV 534009 534839 HC_gene_7743_tx_2 13 - 534009 534839 . 1 831 0 -chrXIV 534009 535002 HC_gene_7743_tx_3 13 - 534009 535002 . 1 994 0 -chrXIV 534009 535002 HC_gene_7743_tx_4 7 - 534009 535002 . 2 866,37 0,957 -chrXIV 534009 535002 HC_gene_7743_tx_5 1 - 534009 535002 . 2 240,692 0,302 -chrXIV 535093 537216 HC_gene_7744_tx_1 1 - 535093 537216 . 2 1182,639 0,1485 -chrXIV 535093 537216 HC_gene_7744_tx_2 1 - 535093 537216 . 1 2124 0 -chrXIV 535093 537929 HC_gene_7744_tx_3 7 - 535093 537929 . 1 2837 0 -chrXIV 535199 535486 MC_gene_7434_tx_1 1 + 535199 535486 . 1 288 0 -chrXIV 538154 539920 HC_gene_7435_tx_1 29 + 538154 539920 . 1 1767 0 -chrXIV 538154 539920 HC_gene_7435_tx_2 1 + 538154 539920 . 2 854,863 0,904 -chrXIV 538154 539920 HC_gene_7435_tx_3 1 + 538154 539920 . 2 1031,661 0,1106 -chrXIV 538154 539920 HC_gene_7435_tx_4 1 + 538154 539920 . 2 98,1055 0,712 -chrXIV 539822 541675 HC_gene_7745_tx_1 2 - 539822 541675 . 1 1854 0 -chrXIV 539822 541911 HC_gene_7745_tx_2 13 - 539822 541911 . 1 2090 0 -chrXIV 539822 541911 HC_gene_7745_tx_3 1 - 539822 541911 . 2 861,1165 0,925 -chrXIV 539822 542059 HC_gene_7745_tx_4 2 - 539822 542059 . 1 2238 0 -chrXIV 542113 542977 HC_gene_7436_tx_1 15 + 542113 542977 . 1 865 0 -chrXIV 542119 542780 HC_gene_7746_tx_1 6 - 542119 542780 . 1 662 0 -chrXIV 542119 543135 HC_gene_7746_tx_3 1 - 542119 543135 . 1 1017 0 -chrXIV 542211 542780 HC_gene_7746_tx_2 1 - 542211 542780 . 1 570 0 -chrXIV 542211 543135 HC_gene_7746_tx_4 2 - 542211 543135 . 1 925 0 -chrXIV 542305 542977 HC_gene_7436_tx_2 74 + 542305 542977 . 1 673 0 -chrXIV 542318 542977 HC_gene_7436_tx_3 1 + 542318 542977 . 1 660 0 -chrXIV 543009 545061 HC_gene_7437_tx_1 12 + 543009 545061 . 1 2053 0 -chrXIV 543009 545185 HC_gene_7437_tx_2 7 + 543009 545185 . 1 2177 0 -chrXIV 543304 545061 HC_gene_7437_tx_3 6 + 543304 545061 . 1 1758 0 -chrXIV 543304 545185 HC_gene_7437_tx_4 1 + 543304 545185 . 1 1882 0 -chrXIV 543535 545061 HC_gene_7437_tx_5 2 + 543535 545061 . 1 1527 0 -chrXIV 543535 545185 HC_gene_7437_tx_6 2 + 543535 545185 . 1 1651 0 -chrXIV 543902 545061 HC_gene_7437_tx_7 2 + 543902 545061 . 1 1160 0 -chrXIV 543902 545185 HC_gene_7437_tx_8 4 + 543902 545185 . 1 1284 0 -chrXIV 544258 545061 HC_gene_7437_tx_9 3 + 544258 545061 . 1 804 0 -chrXIV 544258 545185 HC_gene_7437_tx_10 4 + 544258 545185 . 1 928 0 -chrXIV 544974 546027 HC_gene_7747_tx_1 3 - 544974 546027 . 1 1054 0 -chrXIV 545204 546046 HC_gene_7438_tx_1 205 + 545204 546046 . 2 88,676 0,167 -chrXIV 545204 546046 HC_gene_7438_tx_2 10 + 545204 546046 . 1 843 0 -chrXIV 545204 546046 HC_gene_7438_tx_3 14 + 545204 546046 . 2 95,659 0,184 -chrXIV 545204 546046 HC_gene_7438_tx_4 1 + 545204 546046 . 3 88,301,236 0,167,607 -chrXIV 545204 546046 HC_gene_7438_tx_5 5 + 545204 546046 . 2 95,666 0,177 -chrXIV 545204 546046 HC_gene_7438_tx_6 1 + 545204 546046 . 2 66,429 0,414 -chrXIV 545204 546046 HC_gene_7438_tx_7 1 + 545204 546046 . 4 88,84,202,207 0,167,312,636 -chrXIV 546037 546389 MC_gene_7748_tx_1 1 - 546037 546389 . 1 353 0 -chrXIV 546257 546682 HC_gene_7439_tx_1 4 + 546257 546682 . 1 426 0 -chrXIV 546257 546736 HC_gene_7439_tx_2 1 + 546257 546736 . 1 480 0 -chrXIV 546818 547659 MC_gene_7749_tx_1 1 - 546818 547659 . 1 842 0 -chrXIV 546880 547423 MC_gene_7749_tx_2 1 - 546880 547423 . 1 544 0 -chrXIV 547945 549394 HC_gene_7440_tx_1 4 + 547945 549394 . 1 1450 0 -chrXIV 548010 549394 HC_gene_7440_tx_2 11 + 548010 549394 . 1 1385 0 -chrXIV 548424 549394 HC_gene_7440_tx_3 2 + 548424 549394 . 1 971 0 -chrXIV 549281 552029 HC_gene_7750_tx_1 3 - 549281 552029 . 1 2749 0 -chrXIV 549281 552029 HC_gene_7750_tx_2 1 - 549281 552029 . 2 1429,462 0,2287 -chrXIV 549372 551949 HC_gene_7750_tx_3 1 - 549372 551949 . 2 1134,1348 0,1230 -chrXIV 549372 552029 HC_gene_7750_tx_4 1 - 549372 552029 . 2 1110,1456 0,1202 -chrXIV 549372 552029 HC_gene_7750_tx_5 2 - 549372 552029 . 1 2658 0 -chrXIV 552134 552597 LC_gene_7751_tx_1 1 - 552134 552597 . 1 464 0 -chrXIV 552235 553267 MC_gene_7441_tx_1 1 + 552235 553267 . 1 1033 0 -chrXIV 552362 553124 MC_gene_7441_tx_2 1 + 552362 553124 . 1 763 0 -chrXIV 553334 554904 HC_gene_7442_tx_1 19 + 553334 554904 . 1 1571 0 -chrXIV 553334 554904 HC_gene_7442_tx_2 1 + 553334 554904 . 2 855,657 0,914 -chrXIV 553334 554904 HC_gene_7442_tx_3 1 + 553334 554904 . 2 832,673 0,898 -chrXIV 553558 554904 HC_gene_7442_tx_4 4 + 553558 554904 . 1 1347 0 -chrXIV 554382 554818 LC_gene_7752_tx_1 1 - 554382 554818 . 1 437 0 -chrXIV 554931 555494 MC_gene_7753_tx_1 1 - 554931 555494 . 1 564 0 -chrXIV 555006 556886 HC_gene_7443_tx_1 1 + 555006 556886 . 1 1881 0 -chrXIV 555029 556886 HC_gene_7443_tx_2 21 + 555029 556886 . 1 1858 0 -chrXIV 555029 556886 HC_gene_7443_tx_3 1 + 555029 556886 . 2 182,727 0,1131 -chrXIV 555033 556886 HC_gene_7443_tx_4 2 + 555033 556886 . 1 1854 0 -chrXIV 555834 556886 HC_gene_7443_tx_5 2 + 555834 556886 . 1 1053 0 -chrXIV 555951 556886 HC_gene_7443_tx_6 11 + 555951 556886 . 1 936 0 -chrXIV 555951 556886 HC_gene_7443_tx_7 1 + 555951 556886 . 2 66,687 0,249 -chrXIV 555951 556886 HC_gene_7443_tx_8 1 + 555951 556886 . 2 600,248 0,688 -chrXIV 556353 556886 HC_gene_7443_tx_9 3 + 556353 556886 . 1 534 0 -chrXIV 556431 556886 HC_gene_7443_tx_10 21 + 556431 556886 . 1 456 0 -chrXIV 556621 556886 HC_gene_7443_tx_11 11 + 556621 556886 . 1 266 0 -chrXIV 557019 557671 HC_gene_7444_tx_1 6 + 557019 557671 . 1 653 0 -chrXIV 557019 557886 HC_gene_7444_tx_2 38 + 557019 557886 . 2 592,202 0,666 -chrXIV 557019 557886 HC_gene_7444_tx_3 12 + 557019 557886 . 1 868 0 -chrXIV 557019 557886 HC_gene_7444_tx_4 1 + 557019 557886 . 2 556,202 0,666 -chrXIV 557019 557886 HC_gene_7444_tx_5 1 + 557019 557886 . 2 592,188 0,680 -chrXIV 557019 557886 HC_gene_7444_tx_6 1 + 557019 557886 . 2 596,202 0,666 -chrXIV 557019 557886 HC_gene_7444_tx_7 1 + 557019 557886 . 2 560,202 0,666 -chrXIV 557019 557886 HC_gene_7444_tx_8 1 + 557019 557886 . 2 193,202 0,666 -chrXIV 557027 557886 HC_gene_7444_tx_9 1 + 557027 557886 . 3 162,325,202 0,259,658 -chrXIV 557174 557671 HC_gene_7444_tx_13 4 + 557174 557671 . 1 498 0 -chrXIV 557174 557886 HC_gene_7444_tx_10 3 + 557174 557886 . 2 437,202 0,511 -chrXIV 557174 557886 HC_gene_7444_tx_11 1 + 557174 557886 . 1 713 0 -chrXIV 557174 557886 HC_gene_7444_tx_12 1 + 557174 557886 . 2 377,202 0,511 -chrXIV 557798 557979 HC_gene_7754_tx_1 13 - 557798 557979 . 1 182 0 -chrXIV 557798 558177 HC_gene_7754_tx_2 41 - 557798 558177 . 1 380 0 -chrXIV 557798 558451 HC_gene_7754_tx_3 46 - 557798 558451 . 1 654 0 -chrXIV 557798 558571 HC_gene_7754_tx_4 38 - 557798 558571 . 1 774 0 -chrXIV 557798 558571 HC_gene_7754_tx_5 1 - 557798 558571 . 2 35,377 0,397 -chrXIV 557798 558626 HC_gene_7754_tx_6 7 - 557798 558626 . 1 829 0 -chrXIV 557798 558733 HC_gene_7754_tx_7 61 - 557798 558733 . 1 936 0 -chrXIV 557798 558952 HC_gene_7754_tx_8 38 - 557798 558952 . 1 1155 0 -chrXIV 557798 558952 HC_gene_7754_tx_9 1 - 557798 558952 . 2 92,890 0,265 -chrXIV 557798 559012 HC_gene_7754_tx_10 3 - 557798 559012 . 1 1215 0 -chrXIV 557798 559085 HC_gene_7754_tx_11 1 - 557798 559085 . 2 66,1116 0,172 -chrXIV 557798 559105 HC_gene_7754_tx_12 1 - 557798 559105 . 2 62,1142 0,166 -chrXIV 557798 559105 HC_gene_7754_tx_13 1 - 557798 559105 . 2 49,1139 0,169 -chrXIV 557798 559106 HC_gene_7754_tx_14 1 - 557798 559106 . 2 49,1132 0,177 -chrXIV 557798 559108 HC_gene_7754_tx_15 242 - 557798 559108 . 1 1311 0 -chrXIV 557798 559108 HC_gene_7754_tx_16 1 - 557798 559108 . 2 442,774 0,537 -chrXIV 557798 559108 HC_gene_7754_tx_17 1 - 557798 559108 . 2 1008,61 0,1250 -chrXIV 557798 559108 HC_gene_7754_tx_18 1 - 557798 559108 . 2 450,775 0,536 -chrXIV 557798 559108 HC_gene_7754_tx_19 1 - 557798 559108 . 2 115,1061 0,250 -chrXIV 557798 559108 HC_gene_7754_tx_20 1 - 557798 559108 . 2 61,1103 0,208 -chrXIV 557798 559108 HC_gene_7754_tx_21 1 - 557798 559108 . 2 53,1178 0,133 -chrXIV 557798 559112 HC_gene_7754_tx_22 1 - 557798 559112 . 2 848,393 0,922 -chrXIV 557798 559205 HC_gene_7754_tx_23 1 - 557798 559205 . 1 1408 0 -chrXIV 557888 559108 HC_gene_7754_tx_24 2 - 557888 559108 . 1 1221 0 -chrXIV 559039 559336 HC_gene_7445_tx_1 2 + 559039 559336 . 1 298 0 -chrXIV 559665 560537 HC_gene_7446_tx_1 3 + 559665 560537 . 1 873 0 -chrXIV 559665 560650 HC_gene_7446_tx_2 9 + 559665 560650 . 1 986 0 -chrXIV 559762 560537 HC_gene_7446_tx_3 42 + 559762 560537 . 1 776 0 -chrXIV 559762 560650 HC_gene_7446_tx_4 34 + 559762 560650 . 1 889 0 -chrXIV 559953 560537 HC_gene_7446_tx_5 10 + 559953 560537 . 1 585 0 -chrXIV 559953 560650 HC_gene_7446_tx_6 3 + 559953 560650 . 1 698 0 -chrXIV 560156 560537 HC_gene_7446_tx_7 28 + 560156 560537 . 1 382 0 -chrXIV 560156 560650 HC_gene_7446_tx_8 75 + 560156 560650 . 1 495 0 -chrXIV 560298 560650 HC_gene_7446_tx_9 16 + 560298 560650 . 1 353 0 -chrXIV 561285 563282 MC_gene_7755_tx_1 1 - 561285 563282 . 1 1998 0 -chrXIV 561402 562222 MC_gene_7447_tx_1 1 + 561402 562222 . 1 821 0 -chrXIV 562113 565603 MC_gene_7756_tx_1 1 - 562113 565603 . 1 3491 0 -chrXIV 562123 567729 MC_gene_7757_tx_1 1 - 562123 567729 . 1 5607 0 -chrXIV 566748 567854 LC_gene_7448_tx_1 1 + 566748 567854 . 1 1107 0 -chrXIV 568313 568824 HC_gene_7758_tx_1 12 - 568313 568824 . 1 512 0 -chrXIV 568313 569358 HC_gene_7758_tx_2 6 - 568313 569358 . 1 1046 0 -chrXIV 568313 569751 HC_gene_7758_tx_3 27 - 568313 569751 . 1 1439 0 -chrXIV 568404 569771 MC_gene_7449_tx_1 1 + 568404 569771 . 2 875,427 0,941 -chrXIV 570412 574127 MC_gene_7759_tx_1 1 - 570412 574127 . 1 3716 0 -chrXIV 571847 572506 LC_gene_7450_tx_1 1 + 571847 572506 . 1 660 0 -chrXIV 572345 573073 MC_gene_7759_tx_2 1 - 572345 573073 . 1 729 0 -chrXIV 572875 573963 MC_gene_7451_tx_1 1 + 572875 573963 . 1 1089 0 -chrXIV 574378 575414 HC_gene_7452_tx_1 36 + 574378 575414 . 1 1037 0 -chrXIV 574378 575483 HC_gene_7452_tx_2 3 + 574378 575483 . 1 1106 0 -chrXIV 574378 575645 HC_gene_7452_tx_3 3 + 574378 575645 . 1 1268 0 -chrXIV 574378 575645 HC_gene_7452_tx_4 1 + 574378 575645 . 2 962,127 0,1141 -chrXIV 574378 576666 HC_gene_7452_tx_5 1 + 574378 576666 . 2 1046,1065 0,1224 -chrXIV 574887 575414 HC_gene_7452_tx_6 4 + 574887 575414 . 1 528 0 -chrXIV 574887 575645 HC_gene_7452_tx_7 1 + 574887 575645 . 1 759 0 -chrXIV 574887 576666 HC_gene_7452_tx_8 1 + 574887 576666 . 1 1780 0 -chrXIV 575381 575627 HC_gene_7760_tx_1 121 - 575381 575627 . 1 247 0 -chrXIV 575381 575869 HC_gene_7760_tx_2 248 - 575381 575869 . 1 489 0 -chrXIV 575381 576067 HC_gene_7760_tx_3 2161 - 575381 576067 . 1 687 0 -chrXIV 575524 576067 HC_gene_7760_tx_4 4 - 575524 576067 . 1 544 0 -chrXIV 575525 576067 HC_gene_7760_tx_5 4 - 575525 576067 . 1 543 0 -chrXIV 575526 576067 HC_gene_7760_tx_6 2 - 575526 576067 . 1 542 0 -chrXIV 575527 576067 HC_gene_7760_tx_7 3 - 575527 576067 . 1 541 0 -chrXIV 575528 576067 HC_gene_7760_tx_8 3 - 575528 576067 . 1 540 0 -chrXIV 575536 576067 HC_gene_7760_tx_9 3 - 575536 576067 . 1 532 0 -chrXIV 575545 576067 HC_gene_7760_tx_10 2 - 575545 576067 . 1 523 0 -chrXIV 575548 576067 HC_gene_7760_tx_11 4 - 575548 576067 . 1 520 0 -chrXIV 575554 576067 HC_gene_7760_tx_12 3 - 575554 576067 . 1 514 0 -chrXIV 575558 576067 HC_gene_7760_tx_13 2 - 575558 576067 . 1 510 0 -chrXIV 576696 577216 HC_gene_7453_tx_1 2694 + 576696 577216 . 1 521 0 -chrXIV 577094 578822 HC_gene_7761_tx_1 19 - 577094 578822 . 1 1729 0 -chrXIV 577094 578822 HC_gene_7761_tx_2 1 - 577094 578822 . 3 909,132,185 0,1330,1544 -chrXIV 579210 579439 HC_gene_7762_tx_1 4 - 579210 579439 . 1 230 0 -chrXIV 579420 581731 HC_gene_7454_tx_1 8 + 579420 581731 . 1 2312 0 -chrXIV 579672 581731 HC_gene_7454_tx_2 5 + 579672 581731 . 1 2060 0 -chrXIV 579672 581731 HC_gene_7454_tx_3 1 + 579672 581731 . 2 225,1242 0,818 -chrXIV 581886 583526 HC_gene_7455_tx_1 23 + 581886 583526 . 1 1641 0 -chrXIV 581886 583526 HC_gene_7455_tx_2 1 + 581886 583526 . 2 278,952 0,689 -chrXIV 581886 583803 HC_gene_7455_tx_3 1 + 581886 583803 . 1 1918 0 -chrXIV 582302 583182 LC_gene_7763_tx_1 1 - 582302 583182 . 1 881 0 -chrXIV 583348 585395 HC_gene_7764_tx_1 3 - 583348 585395 . 1 2048 0 -chrXIV 583620 585216 HC_gene_7764_tx_2 1 - 583620 585216 . 1 1597 0 -chrXIV 583620 585395 HC_gene_7764_tx_3 9 - 583620 585395 . 1 1776 0 -chrXIV 583620 585395 HC_gene_7764_tx_4 1 - 583620 585395 . 2 690,994 0,782 -chrXIV 583620 585395 HC_gene_7764_tx_5 1 - 583620 585395 . 2 254,1425 0,351 -chrXIV 585586 585930 HC_gene_7456_tx_1 42 + 585586 585930 . 1 345 0 -chrXIV 585586 586263 HC_gene_7456_tx_2 2 + 585586 586263 . 1 678 0 -chrXIV 585586 586333 HC_gene_7456_tx_3 4 + 585586 586333 . 1 748 0 -chrXIV 585667 585930 HC_gene_7456_tx_4 1 + 585667 585930 . 1 264 0 -chrXIV 586141 586589 HC_gene_7765_tx_1 1 - 586141 586589 . 1 449 0 -chrXIV 586141 586867 HC_gene_7765_tx_2 6 - 586141 586867 . 1 727 0 -chrXIV 586311 586867 HC_gene_7765_tx_3 4 - 586311 586867 . 1 557 0 -chrXIV 586313 586867 HC_gene_7765_tx_4 2 - 586313 586867 . 1 555 0 -chrXIV 586314 586867 HC_gene_7765_tx_5 1 - 586314 586867 . 1 554 0 -chrXIV 586315 586867 HC_gene_7765_tx_6 2 - 586315 586867 . 1 553 0 -chrXIV 586321 586867 HC_gene_7765_tx_7 4 - 586321 586867 . 1 547 0 -chrXIV 586323 586867 HC_gene_7765_tx_8 1 - 586323 586867 . 1 545 0 -chrXIV 586325 586867 HC_gene_7765_tx_9 2 - 586325 586867 . 1 543 0 -chrXIV 586326 586867 HC_gene_7765_tx_10 2 - 586326 586867 . 1 542 0 -chrXIV 586327 586867 HC_gene_7765_tx_11 2 - 586327 586867 . 1 541 0 -chrXIV 586328 586867 HC_gene_7765_tx_12 14 - 586328 586867 . 1 540 0 -chrXIV 586329 586867 HC_gene_7765_tx_13 1 - 586329 586867 . 1 539 0 -chrXIV 586330 586589 HC_gene_7765_tx_66 2 - 586330 586589 . 1 260 0 -chrXIV 586330 586867 HC_gene_7765_tx_14 15 - 586330 586867 . 1 538 0 -chrXIV 586331 586589 HC_gene_7765_tx_67 2 - 586331 586589 . 1 259 0 -chrXIV 586331 586867 HC_gene_7765_tx_15 33 - 586331 586867 . 1 537 0 -chrXIV 586334 586589 HC_gene_7765_tx_68 2 - 586334 586589 . 1 256 0 -chrXIV 586334 586867 HC_gene_7765_tx_16 20 - 586334 586867 . 1 534 0 -chrXIV 586335 586867 HC_gene_7765_tx_17 1 - 586335 586867 . 1 533 0 -chrXIV 586336 586867 HC_gene_7765_tx_18 2 - 586336 586867 . 1 532 0 -chrXIV 586337 586867 HC_gene_7765_tx_19 4 - 586337 586867 . 1 531 0 -chrXIV 586338 586589 HC_gene_7765_tx_69 1 - 586338 586589 . 1 252 0 -chrXIV 586338 586867 HC_gene_7765_tx_20 5 - 586338 586867 . 1 530 0 -chrXIV 586339 586867 HC_gene_7765_tx_21 3 - 586339 586867 . 1 529 0 -chrXIV 586341 586867 HC_gene_7765_tx_22 2 - 586341 586867 . 1 527 0 -chrXIV 586342 586589 HC_gene_7765_tx_70 1 - 586342 586589 . 1 248 0 -chrXIV 586342 586867 HC_gene_7765_tx_23 7 - 586342 586867 . 1 526 0 -chrXIV 586343 586589 HC_gene_7765_tx_71 1 - 586343 586589 . 1 247 0 -chrXIV 586343 586867 HC_gene_7765_tx_24 8 - 586343 586867 . 1 525 0 -chrXIV 586346 586867 HC_gene_7765_tx_25 3 - 586346 586867 . 1 522 0 -chrXIV 586347 586867 HC_gene_7765_tx_26 10 - 586347 586867 . 1 521 0 -chrXIV 586348 586867 HC_gene_7765_tx_27 1 - 586348 586867 . 1 520 0 -chrXIV 586351 586867 HC_gene_7765_tx_28 2 - 586351 586867 . 1 517 0 -chrXIV 586354 586867 HC_gene_7765_tx_29 2 - 586354 586867 . 1 514 0 -chrXIV 586356 586867 HC_gene_7765_tx_30 3 - 586356 586867 . 1 512 0 -chrXIV 586357 586867 HC_gene_7765_tx_31 1 - 586357 586867 . 2 367,83 0,428 -chrXIV 586358 586867 HC_gene_7765_tx_32 2 - 586358 586867 . 1 510 0 -chrXIV 586359 586867 HC_gene_7765_tx_33 4 - 586359 586867 . 1 509 0 -chrXIV 586360 586867 HC_gene_7765_tx_34 5 - 586360 586867 . 1 508 0 -chrXIV 586361 586867 HC_gene_7765_tx_35 1 - 586361 586867 . 1 507 0 -chrXIV 586362 586867 HC_gene_7765_tx_36 8 - 586362 586867 . 1 506 0 -chrXIV 586363 586867 HC_gene_7765_tx_37 1 - 586363 586867 . 1 505 0 -chrXIV 586364 586867 HC_gene_7765_tx_38 2 - 586364 586867 . 1 504 0 -chrXIV 586365 586589 HC_gene_7765_tx_72 1 - 586365 586589 . 1 225 0 -chrXIV 586365 586867 HC_gene_7765_tx_39 6 - 586365 586867 . 1 503 0 -chrXIV 586366 586867 HC_gene_7765_tx_40 7 - 586366 586867 . 1 502 0 -chrXIV 586367 586867 HC_gene_7765_tx_41 2 - 586367 586867 . 1 501 0 -chrXIV 586369 586867 HC_gene_7765_tx_42 1 - 586369 586867 . 1 499 0 -chrXIV 586370 586867 HC_gene_7765_tx_43 2 - 586370 586867 . 1 498 0 -chrXIV 586371 586867 HC_gene_7765_tx_44 1 - 586371 586867 . 1 497 0 -chrXIV 586372 586867 HC_gene_7765_tx_45 4 - 586372 586867 . 1 496 0 -chrXIV 586373 586867 HC_gene_7765_tx_46 3 - 586373 586867 . 1 495 0 -chrXIV 586373 586867 HC_gene_7765_tx_47 1 - 586373 586867 . 2 37,395 0,100 -chrXIV 586374 586867 HC_gene_7765_tx_48 2 - 586374 586867 . 1 494 0 -chrXIV 586376 586867 HC_gene_7765_tx_49 3 - 586376 586867 . 1 492 0 -chrXIV 586378 586867 HC_gene_7765_tx_50 1 - 586378 586867 . 1 490 0 -chrXIV 586380 586867 HC_gene_7765_tx_51 3 - 586380 586867 . 1 488 0 -chrXIV 586382 586867 HC_gene_7765_tx_52 1 - 586382 586867 . 1 486 0 -chrXIV 586385 586589 HC_gene_7765_tx_73 1 - 586385 586589 . 1 205 0 -chrXIV 586385 586867 HC_gene_7765_tx_53 2 - 586385 586867 . 1 483 0 -chrXIV 586389 586867 HC_gene_7765_tx_54 1 - 586389 586867 . 1 479 0 -chrXIV 586390 586867 HC_gene_7765_tx_55 2 - 586390 586867 . 1 478 0 -chrXIV 586393 586867 HC_gene_7765_tx_56 1 - 586393 586867 . 1 475 0 -chrXIV 586394 586867 HC_gene_7765_tx_57 1 - 586394 586867 . 1 474 0 -chrXIV 586398 586867 HC_gene_7765_tx_58 1 - 586398 586867 . 1 470 0 -chrXIV 586402 586867 HC_gene_7765_tx_59 1 - 586402 586867 . 1 466 0 -chrXIV 586406 586867 HC_gene_7765_tx_60 1 - 586406 586867 . 1 462 0 -chrXIV 586408 586867 HC_gene_7765_tx_61 3 - 586408 586867 . 1 460 0 -chrXIV 586409 586867 HC_gene_7765_tx_62 1 - 586409 586867 . 1 459 0 -chrXIV 586411 586867 HC_gene_7765_tx_63 1 - 586411 586867 . 1 457 0 -chrXIV 586412 586867 HC_gene_7765_tx_64 4 - 586412 586867 . 1 456 0 -chrXIV 586414 586867 HC_gene_7765_tx_65 1 - 586414 586867 . 1 454 0 -chrXIV 587003 587706 HC_gene_7766_tx_1 14 - 587003 587706 . 1 704 0 -chrXIV 587003 587869 HC_gene_7766_tx_2 89 - 587003 587869 . 1 867 0 -chrXIV 587685 588258 HC_gene_7457_tx_1 3 + 587685 588258 . 1 574 0 -chrXIV 587896 588258 HC_gene_7458_tx_1 25 + 587896 588258 . 1 363 0 -chrXIV 587896 588327 HC_gene_7458_tx_2 1 + 587896 588327 . 1 432 0 -chrXIV 587970 591210 HC_gene_7767_tx_1 1 - 587970 591210 . 1 3241 0 -chrXIV 588039 591210 HC_gene_7767_tx_2 1 - 588039 591210 . 1 3172 0 -chrXIV 588189 591210 HC_gene_7767_tx_3 8 - 588189 591210 . 1 3022 0 -chrXIV 591301 592925 HC_gene_7768_tx_1 53 - 591301 592925 . 1 1625 0 -chrXIV 591301 592925 HC_gene_7768_tx_2 1 - 591301 592925 . 2 839,711 0,914 -chrXIV 593158 595572 HC_gene_7459_tx_1 1 + 593158 595572 . 2 207,1166 0,1249 -chrXIV 593181 595572 HC_gene_7459_tx_2 1 + 593181 595572 . 1 2392 0 -chrXIV 593348 596861 HC_gene_7460_tx_1 1 + 593348 596861 . 1 3514 0 -chrXIV 595349 598155 MC_gene_7769_tx_1 1 - 595349 598155 . 1 2807 0 -chrXIV 595430 597596 MC_gene_7769_tx_2 1 - 595430 597596 . 1 2167 0 -chrXIV 595482 597277 MC_gene_7769_tx_3 1 - 595482 597277 . 1 1796 0 -chrXIV 597950 599915 HC_gene_7461_tx_1 1 + 597950 599915 . 1 1966 0 -chrXIV 599741 601038 LC_gene_7770_tx_1 1 - 599741 601038 . 1 1298 0 -chrXIV 600874 601957 MC_gene_7462_tx_1 1 + 600874 601957 . 1 1084 0 -chrXIV 602467 603035 LC_gene_7771_tx_1 1 - 602467 603035 . 1 569 0 -chrXIV 602857 604575 HC_gene_7463_tx_1 29 + 602857 604575 . 1 1719 0 -chrXIV 602857 604575 HC_gene_7463_tx_2 1 + 602857 604575 . 2 1544,98 0,1621 -chrXIV 602857 604575 HC_gene_7463_tx_3 1 + 602857 604575 . 2 62,1303 0,416 -chrXIV 602857 604763 HC_gene_7463_tx_4 143 + 602857 604763 . 1 1907 0 -chrXIV 602857 604763 HC_gene_7463_tx_5 1 + 602857 604763 . 2 510,1293 0,614 -chrXIV 602857 604763 HC_gene_7463_tx_6 1 + 602857 604763 . 2 334,923 0,984 -chrXIV 602857 604763 HC_gene_7463_tx_7 1 + 602857 604763 . 2 1721,63 0,1844 -chrXIV 602857 604763 HC_gene_7463_tx_8 1 + 602857 604763 . 2 811,1014 0,893 -chrXIV 602893 604575 HC_gene_7463_tx_9 1 + 602893 604575 . 2 636,961 0,722 -chrXIV 603067 604575 HC_gene_7463_tx_10 6 + 603067 604575 . 1 1509 0 -chrXIV 603067 604763 HC_gene_7463_tx_11 38 + 603067 604763 . 1 1697 0 -chrXIV 603067 604763 HC_gene_7463_tx_12 1 + 603067 604763 . 2 1020,479 0,1218 -chrXIV 603067 604763 HC_gene_7463_tx_13 1 + 603067 604763 . 2 353,1041 0,656 -chrXIV 603523 604575 HC_gene_7463_tx_14 6 + 603523 604575 . 1 1053 0 -chrXIV 603523 604763 HC_gene_7463_tx_15 25 + 603523 604763 . 1 1241 0 -chrXIV 603602 604575 HC_gene_7463_tx_16 5 + 603602 604575 . 1 974 0 -chrXIV 603602 604763 HC_gene_7463_tx_17 28 + 603602 604763 . 1 1162 0 -chrXIV 603602 604763 HC_gene_7463_tx_18 1 + 603602 604763 . 2 976,50 0,1112 -chrXIV 603602 604763 HC_gene_7463_tx_19 1 + 603602 604763 . 2 139,938 0,224 -chrXIV 603690 604575 HC_gene_7463_tx_20 5 + 603690 604575 . 1 886 0 -chrXIV 603690 604763 HC_gene_7463_tx_21 20 + 603690 604763 . 1 1074 0 -chrXIV 603813 604575 HC_gene_7463_tx_22 5 + 603813 604575 . 1 763 0 -chrXIV 603813 604763 HC_gene_7463_tx_23 43 + 603813 604763 . 1 951 0 -chrXIV 604137 604575 HC_gene_7463_tx_24 18 + 604137 604575 . 1 439 0 -chrXIV 604137 604763 HC_gene_7463_tx_25 130 + 604137 604763 . 1 627 0 -chrXIV 604189 604671 MC_gene_7772_tx_1 1 - 604189 604671 . 1 483 0 -chrXIV 604464 604763 HC_gene_7463_tx_26 25 + 604464 604763 . 1 300 0 -chrXIV 604677 605005 HC_gene_7773_tx_1 3 - 604677 605005 . 1 329 0 -chrXIV 604966 605788 HC_gene_7464_tx_1 3 + 604966 605788 . 1 823 0 -chrXIV 605233 605730 MC_gene_7774_tx_1 1 - 605233 605730 . 1 498 0 -chrXIV 605330 605788 HC_gene_7464_tx_2 325 + 605330 605788 . 1 459 0 -chrXIV 605471 605788 HC_gene_7464_tx_3 26 + 605471 605788 . 1 318 0 -chrXIV 605532 605885 MC_gene_7775_tx_1 1 - 605532 605885 . 1 354 0 -chrXIV 605671 606343 MC_gene_7776_tx_1 1 - 605671 606343 . 1 673 0 -chrXIV 606552 609526 HC_gene_7465_tx_1 1 + 606552 609526 . 2 2155,753 0,2222 -chrXIV 607322 608015 LC_gene_7777_tx_1 1 - 607322 608015 . 1 694 0 -chrXIV 610413 611174 HC_gene_7778_tx_1 1 - 610413 611174 . 1 762 0 -chrXIV 610969 611846 HC_gene_7466_tx_1 6 + 610969 611846 . 1 878 0 -chrXIV 610969 611957 HC_gene_7466_tx_2 1 + 610969 611957 . 1 989 0 -chrXIV 611173 611846 HC_gene_7466_tx_3 5 + 611173 611846 . 1 674 0 -chrXIV 611350 611846 HC_gene_7466_tx_4 2 + 611350 611846 . 2 152,248 0,249 -chrXIV 611350 611846 HC_gene_7466_tx_5 6 + 611350 611846 . 1 497 0 -chrXIV 611350 611957 HC_gene_7466_tx_6 1 + 611350 611957 . 1 608 0 -chrXIV 611743 613089 HC_gene_7779_tx_1 4 - 611743 613089 . 1 1347 0 -chrXIV 611743 613191 HC_gene_7779_tx_2 12 - 611743 613191 . 1 1449 0 -chrXIV 611743 613445 HC_gene_7779_tx_3 4 - 611743 613445 . 1 1703 0 -chrXIV 612106 613191 HC_gene_7779_tx_4 4 - 612106 613191 . 1 1086 0 -chrXIV 613595 614512 HC_gene_7467_tx_1 324 + 613595 614512 . 1 918 0 -chrXIV 613755 614512 HC_gene_7467_tx_2 30 + 613755 614512 . 1 758 0 -chrXIV 613894 614512 HC_gene_7467_tx_3 35 + 613894 614512 . 1 619 0 -chrXIV 614059 614512 HC_gene_7467_tx_4 46 + 614059 614512 . 1 454 0 -chrXIV 614387 615487 MC_gene_7780_tx_1 1 - 614387 615487 . 1 1101 0 -chrXIV 614786 616667 HC_gene_7468_tx_1 1 + 614786 616667 . 1 1882 0 -chrXIV 615147 615668 MC_gene_7781_tx_1 1 - 615147 615668 . 1 522 0 -chrXIV 615303 615992 MC_gene_7782_tx_1 1 - 615303 615992 . 1 690 0 -chrXIV 615312 616943 HC_gene_7468_tx_2 1 + 615312 616943 . 2 407,1132 0,500 -chrXIV 615525 616943 HC_gene_7468_tx_3 1 + 615525 616943 . 1 1419 0 -chrXIV 615836 616235 HC_gene_7468_tx_4 1 + 615836 616235 . 1 400 0 -chrXIV 615836 616667 HC_gene_7468_tx_5 1 + 615836 616667 . 2 231,255 0,577 -chrXIV 615836 616667 HC_gene_7468_tx_6 1 + 615836 616667 . 1 832 0 -chrXIV 615836 616943 HC_gene_7468_tx_7 8 + 615836 616943 . 1 1108 0 -chrXIV 616170 618267 HC_gene_7783_tx_1 11 - 616170 618267 . 1 2098 0 -chrXIV 616170 618267 HC_gene_7783_tx_2 1 - 616170 618267 . 2 1269,243 0,1855 -chrXIV 618452 618689 HC_gene_7784_tx_1 32 - 618452 618689 . 1 238 0 -chrXIV 618452 618834 HC_gene_7784_tx_2 80 - 618452 618834 . 1 383 0 -chrXIV 618452 618935 HC_gene_7784_tx_3 66 - 618452 618935 . 1 484 0 -chrXIV 618452 619125 HC_gene_7784_tx_4 115 - 618452 619125 . 1 674 0 -chrXIV 618452 619280 HC_gene_7784_tx_5 31 - 618452 619280 . 1 829 0 -chrXIV 618522 619635 LC_gene_7469_tx_1 1 + 618522 619635 . 1 1114 0 -chrXIV 619548 619693 HC_gene_7785_tx_1 1 - 619548 619693 . 1 146 0 -chrXIV 620056 621045 HC_gene_7470_tx_1 1 + 620056 621045 . 1 990 0 -chrXIV 620056 621050 HC_gene_7470_tx_2 2 + 620056 621050 . 1 995 0 -chrXIV 620056 621076 HC_gene_7470_tx_3 1 + 620056 621076 . 1 1021 0 -chrXIV 620056 621077 HC_gene_7470_tx_4 1 + 620056 621077 . 1 1022 0 -chrXIV 620056 621087 HC_gene_7470_tx_5 1 + 620056 621087 . 1 1032 0 -chrXIV 620056 621109 HC_gene_7470_tx_6 1 + 620056 621109 . 1 1054 0 -chrXIV 620056 621174 HC_gene_7470_tx_7 5 + 620056 621174 . 1 1119 0 -chrXIV 620056 621273 HC_gene_7470_tx_8 42 + 620056 621273 . 1 1218 0 -chrXIV 621145 621591 HC_gene_7786_tx_1 7 - 621145 621591 . 1 447 0 -chrXIV 621145 621734 HC_gene_7786_tx_2 4 - 621145 621734 . 1 590 0 -chrXIV 621145 621822 HC_gene_7786_tx_3 4 - 621145 621822 . 1 678 0 -chrXIV 621145 621953 HC_gene_7786_tx_4 5 - 621145 621953 . 1 809 0 -chrXIV 621145 622046 HC_gene_7786_tx_5 2 - 621145 622046 . 1 902 0 -chrXIV 621145 622268 HC_gene_7786_tx_6 2 - 621145 622268 . 1 1124 0 -chrXIV 621145 622473 HC_gene_7786_tx_7 13 - 621145 622473 . 1 1329 0 -chrXIV 621235 621591 HC_gene_7786_tx_15 9 - 621235 621591 . 1 357 0 -chrXIV 621235 621734 HC_gene_7786_tx_8 9 - 621235 621734 . 1 500 0 -chrXIV 621235 621822 HC_gene_7786_tx_9 10 - 621235 621822 . 1 588 0 -chrXIV 621235 621953 HC_gene_7786_tx_10 11 - 621235 621953 . 1 719 0 -chrXIV 621235 622046 HC_gene_7786_tx_11 9 - 621235 622046 . 1 812 0 -chrXIV 621235 622268 HC_gene_7786_tx_12 4 - 621235 622268 . 1 1034 0 -chrXIV 621235 622370 HC_gene_7786_tx_13 3 - 621235 622370 . 1 1136 0 -chrXIV 621235 622473 HC_gene_7786_tx_14 48 - 621235 622473 . 1 1239 0 -chrXIV 621735 622370 HC_gene_7787_tx_1 1 - 621735 622370 . 1 636 0 -chrXIV 621735 622438 HC_gene_7787_tx_2 1 - 621735 622438 . 1 704 0 -chrXIV 621735 622458 HC_gene_7787_tx_3 2 - 621735 622458 . 1 724 0 -chrXIV 621735 622473 HC_gene_7787_tx_4 7 - 621735 622473 . 1 739 0 -chrXIV 621735 622475 HC_gene_7787_tx_5 1 - 621735 622475 . 1 741 0 -chrXIV 621735 622660 HC_gene_7787_tx_6 1 - 621735 622660 . 1 926 0 -chrXIV 622878 623763 HC_gene_7471_tx_1 1 + 622878 623763 . 1 886 0 -chrXIV 622878 623767 HC_gene_7471_tx_2 1 + 622878 623767 . 1 890 0 -chrXIV 622878 624686 HC_gene_7471_tx_3 1 + 622878 624686 . 2 991,732 0,1077 -chrXIV 622878 624686 HC_gene_7471_tx_4 3 + 622878 624686 . 1 1809 0 -chrXIV 622878 624686 HC_gene_7471_tx_5 3 + 622878 624686 . 2 67,1400 0,409 -chrXIV 622878 624764 HC_gene_7471_tx_6 30 + 622878 624764 . 2 67,1478 0,409 -chrXIV 622878 624764 HC_gene_7471_tx_7 22 + 622878 624764 . 1 1887 0 -chrXIV 623307 624686 HC_gene_7471_tx_8 3 + 623307 624686 . 1 1380 0 -chrXIV 623307 624764 HC_gene_7471_tx_9 10 + 623307 624764 . 1 1458 0 -chrXIV 623307 624764 HC_gene_7471_tx_10 1 + 623307 624764 . 2 269,643 0,815 -chrXIV 623400 623761 HC_gene_7471_tx_21 1 + 623400 623761 . 1 362 0 -chrXIV 623400 624686 HC_gene_7471_tx_11 3 + 623400 624686 . 1 1287 0 -chrXIV 623400 624764 HC_gene_7471_tx_12 1 + 623400 624764 . 2 683,643 0,722 -chrXIV 623400 624764 HC_gene_7471_tx_13 16 + 623400 624764 . 1 1365 0 -chrXIV 623400 624764 HC_gene_7471_tx_14 1 + 623400 624764 . 2 772,500 0,865 -chrXIV 623454 624686 HC_gene_7471_tx_15 1 + 623454 624686 . 1 1233 0 -chrXIV 623454 624764 HC_gene_7471_tx_16 5 + 623454 624764 . 1 1311 0 -chrXIV 623546 624686 HC_gene_7471_tx_17 1 + 623546 624686 . 1 1141 0 -chrXIV 623546 624764 HC_gene_7471_tx_18 5 + 623546 624764 . 1 1219 0 -chrXIV 623641 624686 HC_gene_7471_tx_19 5 + 623641 624686 . 1 1046 0 -chrXIV 623641 624764 HC_gene_7471_tx_20 18 + 623641 624764 . 1 1124 0 -chrXIV 624209 625862 HC_gene_7788_tx_1 2 - 624209 625862 . 1 1654 0 -chrXIV 624533 625688 HC_gene_7788_tx_2 5 - 624533 625688 . 1 1156 0 -chrXIV 624533 625862 HC_gene_7788_tx_3 19 - 624533 625862 . 1 1330 0 -chrXIV 624533 625862 HC_gene_7788_tx_4 1 - 624533 625862 . 2 793,279 0,1051 -chrXIV 624533 625862 HC_gene_7788_tx_5 1 - 624533 625862 . 2 1045,222 0,1108 -chrXIV 624654 625862 HC_gene_7788_tx_6 4 - 624654 625862 . 1 1209 0 -chrXIV 624872 625357 MC_gene_7472_tx_1 1 + 624872 625357 . 1 486 0 -chrXIV 625465 626182 MC_gene_7473_tx_1 1 + 625465 626182 . 1 718 0 -chrXIV 625911 626510 HC_gene_7789_tx_1 3 - 625911 626510 . 1 600 0 -chrXIV 625911 627178 HC_gene_7789_tx_3 6 - 625911 627178 . 1 1268 0 -chrXIV 625911 627178 HC_gene_7789_tx_4 1 - 625911 627178 . 2 640,271 0,997 -chrXIV 625989 626370 HC_gene_7789_tx_13 31 - 625989 626370 . 1 382 0 -chrXIV 625989 626510 HC_gene_7789_tx_2 65 - 625989 626510 . 1 522 0 -chrXIV 625989 626950 HC_gene_7789_tx_5 31 - 625989 626950 . 1 962 0 -chrXIV 625989 627021 HC_gene_7789_tx_6 43 - 625989 627021 . 1 1033 0 -chrXIV 625989 627080 HC_gene_7789_tx_7 4 - 625989 627080 . 1 1092 0 -chrXIV 625989 627166 HC_gene_7789_tx_8 1 - 625989 627166 . 2 795,223 0,955 -chrXIV 625989 627178 HC_gene_7789_tx_9 238 - 625989 627178 . 1 1190 0 -chrXIV 625989 627178 HC_gene_7789_tx_10 1 - 625989 627178 . 2 680,415 0,775 -chrXIV 625989 627178 HC_gene_7789_tx_11 1 - 625989 627178 . 2 427,700 0,490 -chrXIV 625989 627178 HC_gene_7789_tx_12 1 - 625989 627178 . 2 683,436 0,754 -chrXIV 627392 628689 HC_gene_7474_tx_1 52 + 627392 628689 . 1 1298 0 -chrXIV 627392 628689 HC_gene_7474_tx_2 1 + 627392 628689 . 2 332,644 0,654 -chrXIV 629178 629631 HC_gene_7475_tx_1 6 + 629178 629631 . 1 454 0 -chrXIV 629261 629631 HC_gene_7475_tx_2 14 + 629261 629631 . 1 371 0 -chrXIV 629428 630010 HC_gene_7790_tx_1 20 - 629428 630010 . 1 583 0 -chrXIV 629428 630194 HC_gene_7790_tx_3 49 - 629428 630194 . 1 767 0 -chrXIV 629428 630281 HC_gene_7790_tx_4 3 - 629428 630281 . 1 854 0 -chrXIV 629428 630356 HC_gene_7790_tx_5 14 - 629428 630356 . 1 929 0 -chrXIV 629428 630407 HC_gene_7790_tx_6 24 - 629428 630407 . 1 980 0 -chrXIV 629428 630407 HC_gene_7790_tx_7 1 - 629428 630407 . 2 171,759 0,221 -chrXIV 629428 630701 HC_gene_7790_tx_12 11 - 629428 630701 . 1 1274 0 -chrXIV 629428 631016 HC_gene_7790_tx_13 6 - 629428 631016 . 1 1589 0 -chrXIV 629428 631161 HC_gene_7790_tx_14 106 - 629428 631161 . 1 1734 0 -chrXIV 629428 631161 HC_gene_7790_tx_15 1 - 629428 631161 . 2 834,842 0,892 -chrXIV 629428 631161 HC_gene_7790_tx_16 1 - 629428 631161 . 2 722,619 0,1115 -chrXIV 629501 630010 HC_gene_7790_tx_2 23 - 629501 630010 . 1 510 0 -chrXIV 629501 630194 HC_gene_7790_tx_8 53 - 629501 630194 . 1 694 0 -chrXIV 629501 630281 HC_gene_7790_tx_9 4 - 629501 630281 . 1 781 0 -chrXIV 629501 630356 HC_gene_7790_tx_10 6 - 629501 630356 . 1 856 0 -chrXIV 629501 630407 HC_gene_7790_tx_11 29 - 629501 630407 . 1 907 0 -chrXIV 629501 630701 HC_gene_7790_tx_17 20 - 629501 630701 . 1 1201 0 -chrXIV 629501 631016 HC_gene_7790_tx_18 9 - 629501 631016 . 1 1516 0 -chrXIV 629501 631161 HC_gene_7790_tx_19 96 - 629501 631161 . 1 1661 0 -chrXIV 629501 631161 HC_gene_7790_tx_20 1 - 629501 631161 . 2 562,1022 0,639 -chrXIV 629501 631161 HC_gene_7790_tx_21 1 - 629501 631161 . 2 1007,356 0,1305 -chrXIV 629501 631161 HC_gene_7790_tx_22 1 - 629501 631161 . 2 300,1307 0,354 -chrXIV 629501 631161 HC_gene_7790_tx_23 1 - 629501 631161 . 2 1414,181 0,1480 -chrXIV 629501 631161 HC_gene_7790_tx_24 1 - 629501 631161 . 2 696,842 0,819 -chrXIV 631040 631161 HC_gene_7791_tx_1 2 - 631040 631161 . 1 122 0 -chrXIV 631040 631191 HC_gene_7791_tx_2 1 - 631040 631191 . 1 152 0 -chrXIV 631332 631654 MC_gene_7476_tx_1 1 + 631332 631654 . 1 323 0 -chrXIV 631825 632263 MC_gene_7477_tx_1 1 + 631825 632263 . 1 439 0 -chrXIV 632859 633523 HC_gene_7792_tx_1 2 - 632859 633523 . 1 665 0 -chrXIV 632859 633897 HC_gene_7792_tx_2 1 - 632859 633897 . 1 1039 0 -chrXIV 632863 633882 HC_gene_7478_tx_1 3 + 632863 633882 . 1 1020 0 -chrXIV 632863 634005 HC_gene_7478_tx_2 7 + 632863 634005 . 1 1143 0 -chrXIV 632863 634081 HC_gene_7478_tx_3 6 + 632863 634081 . 1 1219 0 -chrXIV 633799 634005 HC_gene_7478_tx_4 1 + 633799 634005 . 1 207 0 -chrXIV 633799 634081 HC_gene_7478_tx_5 1 + 633799 634081 . 1 283 0 -chrXIV 633883 635304 HC_gene_7793_tx_1 1 - 633883 635304 . 1 1422 0 -chrXIV 633883 635329 HC_gene_7793_tx_2 1 - 633883 635329 . 1 1447 0 -chrXIV 634242 635327 HC_gene_7793_tx_3 26 - 634242 635327 . 1 1086 0 -chrXIV 635415 635717 HC_gene_7794_tx_1 11 - 635415 635717 . 1 303 0 -chrXIV 635469 636799 HC_gene_7479_tx_1 4 + 635469 636799 . 1 1331 0 -chrXIV 635826 636741 HC_gene_7795_tx_1 10 - 635826 636741 . 1 916 0 -chrXIV 635916 636614 HC_gene_7479_tx_2 1 + 635916 636614 . 2 171,433 0,266 -chrXIV 635916 636614 HC_gene_7479_tx_3 1 + 635916 636614 . 1 699 0 -chrXIV 635916 636799 HC_gene_7479_tx_4 14 + 635916 636799 . 1 884 0 -chrXIV 636211 636799 HC_gene_7479_tx_5 6 + 636211 636799 . 1 589 0 -chrXIV 636964 638983 HC_gene_7480_tx_1 18 + 636964 638983 . 1 2020 0 -chrXIV 636964 638983 HC_gene_7480_tx_2 1 + 636964 638983 . 2 957,886 0,1134 -chrXIV 636964 638983 HC_gene_7480_tx_3 1 + 636964 638983 . 2 1052,921 0,1099 -chrXIV 638272 638983 HC_gene_7480_tx_4 12 + 638272 638983 . 1 712 0 -chrXIV 638876 639551 HC_gene_7796_tx_1 3 - 638876 639551 . 1 676 0 -chrXIV 638876 639748 HC_gene_7796_tx_2 2 - 638876 639748 . 1 873 0 -chrXIV 638876 640021 HC_gene_7796_tx_3 7 - 638876 640021 . 1 1146 0 -chrXIV 638876 640173 HC_gene_7796_tx_4 23 - 638876 640173 . 1 1298 0 -chrXIV 638876 640173 HC_gene_7796_tx_5 1 - 638876 640173 . 2 80,905 0,393 -chrXIV 640072 641861 LC_gene_7797_tx_1 1 - 640072 641861 . 1 1790 0 -chrXIV 640364 641378 HC_gene_7481_tx_1 2 + 640364 641378 . 1 1015 0 -chrXIV 640364 642628 HC_gene_7481_tx_2 11 + 640364 642628 . 1 2265 0 -chrXIV 640364 643627 HC_gene_7481_tx_4 1 + 640364 643627 . 3 72,338,2496 0,187,768 -chrXIV 640462 642628 HC_gene_7481_tx_3 1 + 640462 642628 . 1 2167 0 -chrXIV 641657 642628 HC_gene_7481_tx_5 8 + 641657 642628 . 1 972 0 -chrXIV 642304 642628 HC_gene_7481_tx_6 4 + 642304 642628 . 1 325 0 -chrXIV 642542 643627 HC_gene_7481_tx_7 1 + 642542 643627 . 1 1086 0 -chrXIV 642555 643524 MC_gene_7798_tx_1 1 - 642555 643524 . 1 970 0 -chrXIV 642635 643520 HC_gene_7481_tx_8 5 + 642635 643520 . 1 886 0 -chrXIV 642635 643627 HC_gene_7481_tx_9 26 + 642635 643627 . 1 993 0 -chrXIV 643701 644273 HC_gene_7482_tx_1 58 + 643701 644273 . 1 573 0 -chrXIV 643905 644273 HC_gene_7482_tx_2 5 + 643905 644273 . 1 369 0 -chrXIV 644147 646969 HC_gene_7799_tx_1 8 - 644147 646969 . 1 2823 0 -chrXIV 644654 645551 LC_gene_7483_tx_1 1 + 644654 645551 . 1 898 0 -chrXIV 647339 649016 HC_gene_7484_tx_1 19 + 647339 649016 . 1 1678 0 -chrXIV 647339 649016 HC_gene_7484_tx_2 1 + 647339 649016 . 2 826,683 0,995 -chrXIV 647906 649016 HC_gene_7484_tx_3 2 + 647906 649016 . 1 1111 0 -chrXIV 648928 651744 HC_gene_7800_tx_1 24 - 648928 651744 . 1 2817 0 -chrXIV 648928 651744 HC_gene_7800_tx_2 1 - 648928 651744 . 2 2007,292 0,2525 -chrXIV 648928 651744 HC_gene_7800_tx_3 1 - 648928 651744 . 2 330,2447 0,370 -chrXIV 648928 651744 HC_gene_7800_tx_4 1 - 648928 651744 . 2 510,2006 0,811 -chrXIV 648928 651744 HC_gene_7800_tx_5 1 - 648928 651744 . 2 1312,1247 0,1570 -chrXIV 652161 652443 HC_gene_7485_tx_1 1 + 652161 652443 . 1 283 0 -chrXIV 652334 653149 HC_gene_7801_tx_1 5 - 652334 653149 . 1 816 0 -chrXIV 652413 653273 HC_gene_7486_tx_1 51 + 652413 653273 . 1 861 0 -chrXIV 652413 653273 HC_gene_7486_tx_2 1 + 652413 653273 . 2 720,74 0,787 -chrXIV 652542 653273 HC_gene_7486_tx_3 5 + 652542 653273 . 1 732 0 -chrXIV 652802 653273 HC_gene_7486_tx_4 3 + 652802 653273 . 1 472 0 -chrXIV 653379 654648 HC_gene_7487_tx_1 46 + 653379 654648 . 1 1270 0 -chrXIV 654566 655055 HC_gene_7802_tx_1 48 - 654566 655055 . 1 490 0 -chrXIV 654566 655305 HC_gene_7802_tx_2 36 - 654566 655305 . 1 740 0 -chrXIV 654566 655383 HC_gene_7802_tx_3 35 - 654566 655383 . 1 818 0 -chrXIV 660778 661396 MC_gene_7803_tx_1 1 - 660778 661396 . 1 619 0 -chrXIV 661435 661650 HC_gene_7804_tx_1 1 - 661435 661650 . 1 216 0 -chrXIV 661435 661909 HC_gene_7804_tx_2 4 - 661435 661909 . 1 475 0 -chrXIV 661665 662399 HC_gene_7805_tx_1 2 - 661665 662399 . 1 735 0 -chrXIV 662312 663733 HC_gene_7488_tx_1 3 + 662312 663733 . 1 1422 0 -chrXIV 662312 663855 HC_gene_7488_tx_2 2 + 662312 663855 . 1 1544 0 -chrXIV 662312 663855 HC_gene_7488_tx_3 1 + 662312 663855 . 2 131,1299 0,245 -chrXIV 662485 663855 HC_gene_7488_tx_4 1 + 662485 663855 . 1 1371 0 -chrXIV 662693 663733 HC_gene_7488_tx_5 100 + 662693 663733 . 1 1041 0 -chrXIV 662693 663855 HC_gene_7488_tx_6 85 + 662693 663855 . 1 1163 0 -chrXIV 662693 663855 HC_gene_7488_tx_7 1 + 662693 663855 . 2 693,398 0,765 -chrXIV 662847 663733 HC_gene_7488_tx_8 8 + 662847 663733 . 1 887 0 -chrXIV 662847 663855 HC_gene_7488_tx_9 29 + 662847 663855 . 1 1009 0 -chrXIV 662847 663855 HC_gene_7488_tx_10 1 + 662847 663855 . 2 720,205 0,804 -chrXIV 663060 663733 HC_gene_7488_tx_11 9 + 663060 663733 . 1 674 0 -chrXIV 663060 663855 HC_gene_7488_tx_12 13 + 663060 663855 . 1 796 0 -chrXIV 663112 663733 HC_gene_7488_tx_13 12 + 663112 663733 . 1 622 0 -chrXIV 663112 663855 HC_gene_7488_tx_14 14 + 663112 663855 . 1 744 0 -chrXIV 663209 663621 LC_gene_7806_tx_1 1 - 663209 663621 . 1 413 0 -chrXIV 663250 663733 HC_gene_7488_tx_16 6 + 663250 663733 . 1 484 0 -chrXIV 663250 663855 HC_gene_7488_tx_15 13 + 663250 663855 . 1 606 0 -chrXIV 663453 663733 HC_gene_7488_tx_17 3 + 663453 663733 . 1 281 0 -chrXIV 663453 663855 HC_gene_7488_tx_18 27 + 663453 663855 . 1 403 0 -chrXIV 663761 664501 MC_gene_7807_tx_1 1 - 663761 664501 . 1 741 0 -chrXIV 664248 665074 HC_gene_7489_tx_1 201 + 664248 665074 . 1 827 0 -chrXIV 664489 665074 HC_gene_7489_tx_2 15 + 664489 665074 . 1 586 0 -chrXIV 665296 666346 HC_gene_7490_tx_1 1 + 665296 666346 . 1 1051 0 -chrXIV 665296 667328 HC_gene_7490_tx_2 6 + 665296 667328 . 1 2033 0 -chrXIV 665296 667412 HC_gene_7490_tx_3 8 + 665296 667412 . 1 2117 0 -chrXIV 665445 667328 HC_gene_7490_tx_4 2 + 665445 667328 . 1 1884 0 -chrXIV 665445 667412 HC_gene_7490_tx_5 2 + 665445 667412 . 1 1968 0 -chrXIV 665816 667412 HC_gene_7490_tx_6 1 + 665816 667412 . 1 1597 0 -chrXIV 665943 667328 HC_gene_7490_tx_7 2 + 665943 667328 . 1 1386 0 -chrXIV 665943 667412 HC_gene_7490_tx_8 4 + 665943 667412 . 1 1470 0 -chrXIV 666636 667328 HC_gene_7490_tx_9 8 + 666636 667328 . 1 693 0 -chrXIV 666636 667412 HC_gene_7490_tx_10 7 + 666636 667412 . 1 777 0 -chrXIV 667294 668138 MC_gene_7808_tx_1 1 - 667294 668138 . 1 845 0 -chrXIV 667340 667806 MC_gene_7808_tx_2 1 - 667340 667806 . 1 467 0 -chrXIV 668328 669505 LC_gene_7809_tx_1 1 - 668328 669505 . 1 1178 0 -chrXIV 668349 669799 HC_gene_7491_tx_1 153 + 668349 669799 . 1 1451 0 -chrXIV 669040 669799 HC_gene_7491_tx_2 13 + 669040 669799 . 1 760 0 -chrXIV 669093 669799 HC_gene_7491_tx_3 39 + 669093 669799 . 1 707 0 -chrXIV 669169 669799 HC_gene_7491_tx_4 43 + 669169 669799 . 1 631 0 -chrXIV 669448 670031 HC_gene_7810_tx_1 2 - 669448 670031 . 1 584 0 -chrXIV 669448 670219 HC_gene_7810_tx_3 8 - 669448 670219 . 1 772 0 -chrXIV 669560 670031 HC_gene_7810_tx_2 1 - 669560 670031 . 1 472 0 -chrXIV 669560 670219 HC_gene_7810_tx_4 1 - 669560 670219 . 1 660 0 -chrXIV 669657 670031 HC_gene_7810_tx_6 12 - 669657 670031 . 1 375 0 -chrXIV 669657 670219 HC_gene_7810_tx_5 108 - 669657 670219 . 1 563 0 -chrXIV 670377 672218 HC_gene_7492_tx_1 6 + 670377 672218 . 1 1842 0 -chrXIV 670377 672218 HC_gene_7492_tx_2 1 + 670377 672218 . 2 287,1245 0,597 -chrXIV 670377 672218 HC_gene_7492_tx_3 1 + 670377 672218 . 2 921,871 0,971 -chrXIV 671272 672218 HC_gene_7492_tx_4 4 + 671272 672218 . 1 947 0 -chrXIV 672106 672495 MC_gene_7811_tx_1 1 - 672106 672495 . 1 390 0 -chrXIV 672392 672978 HC_gene_7493_tx_1 15 + 672392 672978 . 1 587 0 -chrXIV 672392 673091 HC_gene_7493_tx_2 69 + 672392 673091 . 1 700 0 -chrXIV 672405 673091 HC_gene_7493_tx_3 1 + 672405 673091 . 2 116,485 0,202 -chrXIV 672519 672978 HC_gene_7493_tx_4 1 + 672519 672978 . 1 460 0 -chrXIV 672519 673091 HC_gene_7493_tx_5 9 + 672519 673091 . 1 573 0 -chrXIV 672741 673091 HC_gene_7493_tx_6 13 + 672741 673091 . 1 351 0 -chrXIV 672939 674709 HC_gene_7812_tx_1 40 - 672939 674709 . 1 1771 0 -chrXIV 672939 674709 HC_gene_7812_tx_2 1 - 672939 674709 . 2 825,852 0,919 -chrXIV 672939 674709 HC_gene_7812_tx_3 1 - 672939 674709 . 2 749,939 0,832 -chrXIV 673061 674709 HC_gene_7812_tx_4 5 - 673061 674709 . 1 1649 0 -chrXIV 674908 676139 HC_gene_7494_tx_1 37 + 674908 676139 . 1 1232 0 -chrXIV 674913 676139 HC_gene_7494_tx_2 1 + 674913 676139 . 1 1227 0 -chrXIV 675077 676139 HC_gene_7494_tx_3 7 + 675077 676139 . 1 1063 0 -chrXIV 676093 677195 HC_gene_7495_tx_1 54 + 676093 677195 . 1 1103 0 -chrXIV 676460 677195 HC_gene_7495_tx_2 10 + 676460 677195 . 1 736 0 -chrXIV 676697 677195 HC_gene_7495_tx_3 15 + 676697 677195 . 1 499 0 -chrXIV 676971 678518 HC_gene_7813_tx_1 2 - 676971 678518 . 1 1548 0 -chrXIV 677108 677813 HC_gene_7813_tx_5 8 - 677108 677813 . 1 706 0 -chrXIV 677108 678518 HC_gene_7813_tx_2 66 - 677108 678518 . 1 1411 0 -chrXIV 677108 678518 HC_gene_7813_tx_3 1 - 677108 678518 . 2 557,787 0,624 -chrXIV 677108 678518 HC_gene_7813_tx_4 1 - 677108 678518 . 2 396,137 0,1274 -chrXIV 677589 678610 LC_gene_7496_tx_1 1 + 677589 678610 . 1 1022 0 -chrXIV 678740 680527 HC_gene_7497_tx_1 27 + 678740 680527 . 1 1788 0 -chrXIV 678740 680693 HC_gene_7497_tx_2 1 + 678740 680693 . 1 1954 0 -chrXIV 679613 680527 HC_gene_7497_tx_3 8 + 679613 680527 . 1 915 0 -chrXIV 679613 680693 HC_gene_7497_tx_4 1 + 679613 680693 . 1 1081 0 -chrXIV 679985 680527 HC_gene_7497_tx_5 10 + 679985 680527 . 1 543 0 -chrXIV 680069 680527 HC_gene_7497_tx_6 2 + 680069 680527 . 1 459 0 -chrXIV 680069 680693 HC_gene_7497_tx_7 1 + 680069 680693 . 1 625 0 -chrXIV 680581 685714 HC_gene_7814_tx_1 3 - 680581 685714 . 1 5134 0 -chrXIV 685904 687091 HC_gene_7498_tx_1 2 + 685904 687091 . 1 1188 0 -chrXIV 685904 687167 HC_gene_7498_tx_2 7 + 685904 687167 . 1 1264 0 -chrXIV 685904 687252 HC_gene_7498_tx_3 30 + 685904 687252 . 1 1349 0 -chrXIV 685904 687252 HC_gene_7498_tx_4 1 + 685904 687252 . 2 480,801 0,548 -chrXIV 685904 687252 HC_gene_7498_tx_5 1 + 685904 687252 . 2 893,382 0,967 -chrXIV 687139 687502 HC_gene_7815_tx_1 128 - 687139 687502 . 1 364 0 -chrXIV 687139 687644 HC_gene_7815_tx_2 2 - 687139 687644 . 1 506 0 -chrXIV 687628 690071 HC_gene_7499_tx_1 6 + 687628 690071 . 1 2444 0 -chrXIV 687628 690071 HC_gene_7499_tx_2 1 + 687628 690071 . 2 2299,73 0,2371 -chrXIV 690141 690701 LC_gene_7816_tx_1 1 - 690141 690701 . 1 561 0 -chrXIV 690217 691560 HC_gene_7500_tx_1 32 + 690217 691560 . 1 1344 0 -chrXIV 690217 691560 HC_gene_7500_tx_2 1 + 690217 691560 . 2 301,775 0,569 -chrXIV 690521 691560 HC_gene_7500_tx_3 7 + 690521 691560 . 1 1040 0 -chrXIV 691289 691560 HC_gene_7500_tx_4 2 + 691289 691560 . 1 272 0 -chrXIV 691542 691949 MC_gene_7817_tx_1 1 - 691542 691949 . 1 408 0 -chrXIV 692267 692960 HC_gene_7501_tx_1 11 + 692267 692960 . 1 694 0 -chrXIV 692360 692960 HC_gene_7501_tx_2 22 + 692360 692960 . 1 601 0 -chrXIV 692488 692960 HC_gene_7501_tx_3 220 + 692488 692960 . 1 473 0 -chrXIV 692606 692960 HC_gene_7501_tx_4 22 + 692606 692960 . 1 355 0 -chrXIV 692711 692960 HC_gene_7501_tx_5 18 + 692711 692960 . 1 250 0 -chrXIV 692854 693522 HC_gene_7818_tx_1 1 - 692854 693522 . 1 669 0 -chrXIV 692854 693579 HC_gene_7818_tx_2 1 - 692854 693579 . 1 726 0 -chrXIV 692854 693876 HC_gene_7818_tx_3 1 - 692854 693876 . 1 1023 0 -chrXIV 692854 694056 HC_gene_7818_tx_4 9 - 692854 694056 . 1 1203 0 -chrXIV 694208 694527 HC_gene_7819_tx_1 30 - 694208 694527 . 1 320 0 -chrXIV 694208 694833 HC_gene_7819_tx_2 259 - 694208 694833 . 1 626 0 -chrXIV 694937 695252 HC_gene_7820_tx_1 21 - 694937 695252 . 1 316 0 -chrXIV 694937 695344 HC_gene_7820_tx_2 168 - 694937 695344 . 1 408 0 -chrXIV 695590 697638 HC_gene_7502_tx_1 10 + 695590 697638 . 1 2049 0 -chrXIV 697550 699028 HC_gene_7821_tx_1 3 - 697550 699028 . 1 1479 0 -chrXIV 697550 699479 HC_gene_7821_tx_2 19 - 697550 699479 . 1 1930 0 -chrXIV 697550 699479 HC_gene_7821_tx_3 1 - 697550 699479 . 3 706,135,951 0,799,979 -chrXIV 697550 699479 HC_gene_7821_tx_4 1 - 697550 699479 . 2 1409,284 0,1646 -chrXIV 699684 700526 HC_gene_7503_tx_1 5 + 699684 700526 . 1 843 0 -chrXIV 699684 700537 HC_gene_7503_tx_2 1 + 699684 700537 . 1 854 0 -chrXIV 699684 700549 HC_gene_7503_tx_3 1 + 699684 700549 . 1 866 0 -chrXIV 699684 700591 HC_gene_7503_tx_4 1 + 699684 700591 . 1 908 0 -chrXIV 699978 700526 HC_gene_7503_tx_5 1 + 699978 700526 . 1 549 0 -chrXIV 700368 701684 HC_gene_7822_tx_1 1 - 700368 701684 . 1 1317 0 -chrXIV 700500 700975 HC_gene_7822_tx_3 10 - 700500 700975 . 1 476 0 -chrXIV 700500 701684 HC_gene_7822_tx_2 41 - 700500 701684 . 1 1185 0 -chrXIV 701881 703249 HC_gene_7504_tx_1 100 + 701881 703249 . 1 1369 0 -chrXIV 701881 703249 HC_gene_7504_tx_2 1 + 701881 703249 . 2 1192,56 0,1313 -chrXIV 701881 703379 HC_gene_7504_tx_3 2 + 701881 703379 . 1 1499 0 -chrXIV 701881 703433 HC_gene_7504_tx_4 9 + 701881 703433 . 1 1553 0 -chrXIV 701956 703249 HC_gene_7504_tx_5 9 + 701956 703249 . 1 1294 0 -chrXIV 702257 702462 LC_gene_7823_tx_1 1 - 702257 702462 . 1 206 0 -chrXIV 702508 703249 HC_gene_7504_tx_6 16 + 702508 703249 . 1 742 0 -chrXIV 702894 703249 HC_gene_7504_tx_7 15 + 702894 703249 . 1 356 0 -chrXIV 702894 703433 HC_gene_7504_tx_8 1 + 702894 703433 . 1 540 0 -chrXIV 703581 705943 HC_gene_7505_tx_1 1 + 703581 705943 . 1 2363 0 -chrXIV 703657 705943 HC_gene_7505_tx_2 47 + 703657 705943 . 1 2287 0 -chrXIV 703657 705943 HC_gene_7505_tx_3 1 + 703657 705943 . 2 261,1385 0,902 -chrXIV 703657 705943 HC_gene_7505_tx_4 1 + 703657 705943 . 2 223,1718 0,569 -chrXIV 703657 705943 HC_gene_7505_tx_5 1 + 703657 705943 . 3 65,8,734 0,740,1553 -chrXIV 703657 705943 HC_gene_7505_tx_6 1 + 703657 705943 . 2 353,1280 0,1007 -chrXIV 703657 705943 HC_gene_7505_tx_7 1 + 703657 705943 . 2 259,1385 0,902 -chrXIV 703657 705943 HC_gene_7505_tx_8 1 + 703657 705943 . 2 288,1358 0,929 -chrXIV 703657 705943 HC_gene_7505_tx_9 1 + 703657 705943 . 2 409,902 0,1385 -chrXIV 703657 705943 HC_gene_7505_tx_10 1 + 703657 705943 . 2 923,1079 0,1208 -chrXIV 703657 705943 HC_gene_7505_tx_11 1 + 703657 705943 . 2 292,1198 0,1089 -chrXIV 703657 705943 HC_gene_7505_tx_12 1 + 703657 705943 . 2 531,1248 0,1039 -chrXIV 703657 705943 HC_gene_7505_tx_13 1 + 703657 705943 . 2 145,1217 0,1070 -chrXIV 703657 705943 HC_gene_7505_tx_14 1 + 703657 705943 . 2 1435,806 0,1481 -chrXIV 703657 705943 HC_gene_7505_tx_15 1 + 703657 705943 . 2 132,1841 0,446 -chrXIV 703657 705943 HC_gene_7505_tx_16 1 + 703657 705943 . 2 328,1400 0,887 -chrXIV 703657 705943 HC_gene_7505_tx_17 1 + 703657 705943 . 2 407,1028 0,1259 -chrXIV 703745 705943 HC_gene_7505_tx_18 2 + 703745 705943 . 1 2199 0 -chrXIV 703920 705943 HC_gene_7505_tx_19 1 + 703920 705943 . 2 29,1385 0,639 -chrXIV 703920 705943 HC_gene_7505_tx_20 6 + 703920 705943 . 1 2024 0 -chrXIV 704167 705943 HC_gene_7505_tx_21 13 + 704167 705943 . 1 1777 0 -chrXIV 705874 707741 LC_gene_7824_tx_1 1 - 705874 707741 . 1 1868 0 -chrXIV 706113 707653 HC_gene_7506_tx_1 8 + 706113 707653 . 1 1541 0 -chrXIV 707775 708339 HC_gene_7507_tx_1 175 + 707775 708339 . 1 565 0 -chrXIV 707945 708339 HC_gene_7507_tx_2 26 + 707945 708339 . 1 395 0 -chrXIV 709215 711415 HC_gene_7508_tx_1 3 + 709215 711415 . 1 2201 0 -chrXIV 709215 711415 HC_gene_7508_tx_2 1 + 709215 711415 . 2 295,510 0,1691 -chrXIV 710634 711322 HC_gene_7508_tx_3 1 + 710634 711322 . 1 689 0 -chrXIV 710634 711415 HC_gene_7508_tx_4 5 + 710634 711415 . 1 782 0 -chrXIV 711303 712979 LC_gene_7825_tx_1 1 - 711303 712979 . 3 626,761,66 0,673,1611 -chrXIV 711602 713000 HC_gene_7509_tx_1 19 + 711602 713000 . 1 1399 0 -chrXIV 712931 713314 HC_gene_7826_tx_1 37 - 712931 713314 . 1 384 0 -chrXIV 712931 713380 HC_gene_7826_tx_2 2 - 712931 713380 . 1 450 0 -chrXIV 712931 713442 HC_gene_7826_tx_3 7 - 712931 713442 . 1 512 0 -chrXIV 712931 713686 HC_gene_7826_tx_4 45 - 712931 713686 . 1 756 0 -chrXIV 712931 713686 HC_gene_7826_tx_5 1 - 712931 713686 . 2 533,123 0,633 -chrXIV 712931 713866 HC_gene_7826_tx_6 2 - 712931 713866 . 1 936 0 -chrXIV 712931 714151 HC_gene_7826_tx_7 1 - 712931 714151 . 1 1221 0 -chrXIV 712931 714284 HC_gene_7826_tx_8 1 - 712931 714284 . 1 1354 0 -chrXIV 712931 714284 HC_gene_7826_tx_9 1 - 712931 714284 . 2 1037,189 0,1165 -chrXIV 712931 714439 HC_gene_7826_tx_10 1 - 712931 714439 . 1 1509 0 -chrXIV 712931 715428 HC_gene_7826_tx_11 3 - 712931 715428 . 1 2498 0 -chrXIV 713412 713847 LC_gene_7510_tx_1 1 + 713412 713847 . 1 436 0 -chrXIV 713922 715428 HC_gene_7826_tx_12 1 - 713922 715428 . 2 58,1372 0,135 -chrXIV 713937 715428 HC_gene_7826_tx_13 1 - 713937 715428 . 2 43,1372 0,120 -chrXIV 713985 714151 HC_gene_7826_tx_21 54 - 713985 714151 . 1 167 0 -chrXIV 713985 714284 HC_gene_7826_tx_22 94 - 713985 714284 . 1 300 0 -chrXIV 713985 714439 HC_gene_7826_tx_23 161 - 713985 714439 . 1 455 0 -chrXIV 713985 714623 HC_gene_7826_tx_24 70 - 713985 714623 . 1 639 0 -chrXIV 713985 715428 HC_gene_7826_tx_14 435 - 713985 715428 . 1 1444 0 -chrXIV 713985 715428 HC_gene_7826_tx_15 1 - 713985 715428 . 2 30,1353 0,91 -chrXIV 713985 715428 HC_gene_7826_tx_16 1 - 713985 715428 . 2 380,1013 0,431 -chrXIV 713985 715428 HC_gene_7826_tx_17 1 - 713985 715428 . 3 251,497,232 0,401,1212 -chrXIV 713985 715428 HC_gene_7826_tx_18 1 - 713985 715428 . 2 1054,273 0,1171 -chrXIV 713985 715428 HC_gene_7826_tx_19 1 - 713985 715428 . 2 761,498 0,946 -chrXIV 713985 715428 HC_gene_7826_tx_20 1 - 713985 715428 . 3 675,74,247 0,1012,1197 -chrXIV 713985 715850 HC_gene_7826_tx_25 1 - 713985 715850 . 1 1866 0 -chrXIV 715365 715850 HC_gene_7827_tx_1 8 - 715365 715850 . 1 486 0 -chrXIV 715365 715936 HC_gene_7827_tx_2 4 - 715365 715936 . 1 572 0 -chrXIV 716115 716411 HC_gene_7511_tx_1 140 + 716115 716411 . 1 297 0 -chrXIV 716115 716540 HC_gene_7511_tx_2 19 + 716115 716540 . 1 426 0 -chrXIV 716317 716701 HC_gene_7828_tx_1 32 - 716317 716701 . 1 385 0 -chrXIV 716317 716785 HC_gene_7828_tx_2 37 - 716317 716785 . 1 469 0 -chrXIV 716317 717082 HC_gene_7828_tx_3 12 - 716317 717082 . 1 766 0 -chrXIV 716317 717155 HC_gene_7828_tx_4 12 - 716317 717155 . 1 839 0 -chrXIV 718588 719073 HC_gene_7829_tx_1 1 - 718588 719073 . 1 486 0 -chrXIV 718592 719073 HC_gene_7829_tx_2 1 - 718592 719073 . 1 482 0 -chrXIV 718597 719073 HC_gene_7829_tx_3 4 - 718597 719073 . 1 477 0 -chrXIV 718620 719061 HC_gene_7829_tx_4 1 - 718620 719061 . 1 442 0 -chrXIV 718622 719063 HC_gene_7829_tx_5 1 - 718622 719063 . 1 442 0 -chrXIV 718624 719021 HC_gene_7829_tx_6 1 - 718624 719021 . 1 398 0 -chrXIV 719154 720705 HC_gene_7830_tx_1 1 - 719154 720705 . 1 1552 0 -chrXIV 719239 719650 HC_gene_7830_tx_8 5 - 719239 719650 . 1 412 0 -chrXIV 719239 720268 HC_gene_7830_tx_2 8 - 719239 720268 . 1 1030 0 -chrXIV 719239 720345 HC_gene_7830_tx_3 6 - 719239 720345 . 1 1107 0 -chrXIV 719239 720539 HC_gene_7830_tx_4 3 - 719239 720539 . 1 1301 0 -chrXIV 719239 720620 HC_gene_7830_tx_5 6 - 719239 720620 . 1 1382 0 -chrXIV 719239 720705 HC_gene_7830_tx_6 44 - 719239 720705 . 1 1467 0 -chrXIV 719239 720725 HC_gene_7830_tx_7 1 - 719239 720725 . 2 162,399 0,1088 -chrXIV 719515 720747 LC_gene_7512_tx_1 1 + 719515 720747 . 1 1233 0 -chrXIV 720932 721559 HC_gene_7831_tx_1 35 - 720932 721559 . 1 628 0 -chrXIV 720932 723156 HC_gene_7831_tx_2 1 - 720932 723156 . 2 694,815 0,1410 -chrXIV 720932 723156 HC_gene_7831_tx_3 1 - 720932 723156 . 2 973,1071 0,1154 -chrXIV 720932 723156 HC_gene_7831_tx_4 115 - 720932 723156 . 2 839,854 0,1371 -chrXIV 720932 723156 HC_gene_7831_tx_5 4 - 720932 723156 . 1 2225 0 -chrXIV 720932 723156 HC_gene_7831_tx_6 18 - 720932 723156 . 2 835,854 0,1371 -chrXIV 720932 723156 HC_gene_7831_tx_7 1 - 720932 723156 . 3 544,232,854 0,607,1371 -chrXIV 720932 723156 HC_gene_7831_tx_8 1 - 720932 723156 . 2 845,840 0,1385 -chrXIV 720932 723156 HC_gene_7831_tx_9 1 - 720932 723156 . 2 727,844 0,1381 -chrXIV 720932 723156 HC_gene_7831_tx_10 1 - 720932 723156 . 2 1023,1100 0,1125 -chrXIV 720932 723156 HC_gene_7831_tx_11 1 - 720932 723156 . 2 760,828 0,1397 -chrXIV 720932 723156 HC_gene_7831_tx_12 1 - 720932 723156 . 2 746,854 0,1371 -chrXIV 720932 723156 HC_gene_7831_tx_13 1 - 720932 723156 . 2 792,854 0,1371 -chrXIV 720932 723156 HC_gene_7831_tx_14 1 - 720932 723156 . 2 835,848 0,1377 -chrXIV 720932 723156 HC_gene_7831_tx_15 1 - 720932 723156 . 2 799,854 0,1371 -chrXIV 720932 723156 HC_gene_7831_tx_16 1 - 720932 723156 . 2 809,826 0,1399 -chrXIV 720932 723156 HC_gene_7831_tx_17 1 - 720932 723156 . 2 746,826 0,1399 -chrXIV 720932 723156 HC_gene_7831_tx_18 1 - 720932 723156 . 2 788,798 0,1427 -chrXIV 720932 723156 HC_gene_7831_tx_19 2 - 720932 723156 . 2 777,863 0,1362 -chrXIV 720932 723156 HC_gene_7831_tx_20 1 - 720932 723156 . 2 823,844 0,1381 -chrXIV 720932 723156 HC_gene_7831_tx_21 1 - 720932 723156 . 2 788,863 0,1362 -chrXIV 720932 723156 HC_gene_7831_tx_22 1 - 720932 723156 . 2 801,844 0,1381 -chrXIV 720932 723156 HC_gene_7831_tx_23 1 - 720932 723156 . 3 839,146,622 0,1371,1603 -chrXIV 720932 723156 HC_gene_7831_tx_24 1 - 720932 723156 . 2 839,826 0,1399 -chrXIV 720932 723156 HC_gene_7831_tx_25 1 - 720932 723156 . 2 694,828 0,1397 -chrXIV 722294 723156 HC_gene_7831_tx_26 3 - 722294 723156 . 1 863 0 -chrXIV 723192 723962 HC_gene_7832_tx_1 3 - 723192 723962 . 1 771 0 -chrXIV 723192 724323 HC_gene_7832_tx_3 1 - 723192 724323 . 1 1132 0 -chrXIV 723192 724334 HC_gene_7832_tx_4 9 - 723192 724334 . 1 1143 0 -chrXIV 723301 723962 HC_gene_7832_tx_2 13 - 723301 723962 . 1 662 0 -chrXIV 723301 724334 HC_gene_7832_tx_5 70 - 723301 724334 . 1 1034 0 -chrXIV 723474 723881 LC_gene_7513_tx_1 1 + 723474 723881 . 1 408 0 -chrXIV 724498 726012 HC_gene_7514_tx_1 9 + 724498 726012 . 1 1515 0 -chrXIV 725138 725967 LC_gene_7833_tx_1 1 - 725138 725967 . 1 830 0 -chrXIV 726469 727526 MC_gene_7515_tx_1 1 + 726469 727526 . 1 1058 0 -chrXIV 726629 727226 HC_gene_7834_tx_1 1 - 726629 727226 . 1 598 0 -chrXIV 727357 727732 HC_gene_7835_tx_1 11 - 727357 727732 . 1 376 0 -chrXIV 727357 728266 HC_gene_7835_tx_2 2 - 727357 728266 . 1 910 0 -chrXIV 727747 728327 HC_gene_7516_tx_1 1 + 727747 728327 . 1 581 0 -chrXIV 728208 729300 HC_gene_7836_tx_1 9 - 728208 729300 . 1 1093 0 -chrXIV 728208 730630 HC_gene_7836_tx_2 18 - 728208 730630 . 1 2423 0 -chrXIV 728417 729301 MC_gene_7517_tx_1 1 + 728417 729301 . 1 885 0 -chrXIV 728605 730630 HC_gene_7836_tx_3 1 - 728605 730630 . 1 2026 0 -chrXIV 731319 733349 HC_gene_7518_tx_1 3 + 731319 733349 . 1 2031 0 -chrXIV 733230 734082 HC_gene_7837_tx_1 4 - 733230 734082 . 1 853 0 -chrXIV 733230 736081 HC_gene_7837_tx_2 1 - 733230 736081 . 1 2852 0 -chrXIV 734414 735853 HC_gene_7519_tx_1 3 + 734414 735853 . 1 1440 0 -chrXIV 735935 736443 LC_gene_7520_tx_1 1 + 735935 736443 . 1 509 0 -chrXIV 736295 736908 MC_gene_7838_tx_1 1 - 736295 736908 . 1 614 0 -chrXIV 736749 738582 HC_gene_7521_tx_1 4 + 736749 738582 . 1 1834 0 -chrXIV 736749 738779 HC_gene_7521_tx_2 3 + 736749 738779 . 1 2031 0 -chrXIV 737057 738582 HC_gene_7521_tx_3 4 + 737057 738582 . 1 1526 0 -chrXIV 737057 738779 HC_gene_7521_tx_4 1 + 737057 738779 . 1 1723 0 -chrXIV 739576 740032 MC_gene_7522_tx_1 1 + 739576 740032 . 1 457 0 -chrXIV 740040 741904 MC_gene_7839_tx_1 1 - 740040 741904 . 1 1865 0 -chrXIV 740091 742175 HC_gene_7523_tx_1 1 + 740091 742175 . 1 2085 0 -chrXIV 740227 742191 MC_gene_7840_tx_1 1 - 740227 742191 . 1 1965 0 -chrXIV 740909 742187 MC_gene_7840_tx_2 1 - 740909 742187 . 1 1279 0 -chrXIV 742321 743627 HC_gene_7841_tx_1 1 - 742321 743627 . 1 1307 0 -chrXIV 742349 742652 HC_gene_7524_tx_1 10 + 742349 742652 . 1 304 0 -chrXIV 742558 743627 HC_gene_7841_tx_2 71 - 742558 743627 . 1 1070 0 -chrXIV 742558 743627 HC_gene_7841_tx_3 1 - 742558 743627 . 2 571,458 0,612 -chrXIV 743810 746385 HC_gene_7525_tx_1 1 + 743810 746385 . 1 2576 0 -chrXIV 744137 745808 MC_gene_7842_tx_1 1 - 744137 745808 . 2 1473,142 0,1530 -chrXIV 746192 746733 MC_gene_7843_tx_1 1 - 746192 746733 . 1 542 0 -chrXIV 746799 749733 MC_gene_7526_tx_1 1 + 746799 749733 . 2 1467,1382 0,1553 -chrXIV 746867 749388 MC_gene_7526_tx_2 1 + 746867 749388 . 1 2522 0 -chrXIV 748888 750020 HC_gene_7844_tx_1 4 - 748888 750020 . 1 1133 0 -chrXIV 748954 750359 MC_gene_7527_tx_1 1 + 748954 750359 . 1 1406 0 -chrXIV 750281 755086 HC_gene_7845_tx_1 2 - 750281 755086 . 1 4806 0 -chrXIV 750281 755086 HC_gene_7845_tx_2 1 - 750281 755086 . 2 2233,2494 0,2312 -chrXIV 752137 755086 HC_gene_7845_tx_3 1 - 752137 755086 . 1 2950 0 -chrXIV 755295 755736 HC_gene_7528_tx_1 1 + 755295 755736 . 1 442 0 -chrXIV 755668 756192 HC_gene_7846_tx_1 11 - 755668 756192 . 1 525 0 -chrXIV 755668 758178 HC_gene_7846_tx_2 3 - 755668 758178 . 1 2511 0 -chrXIV 755668 758554 HC_gene_7846_tx_3 2 - 755668 758554 . 1 2887 0 -chrXIV 755668 758962 HC_gene_7846_tx_4 2 - 755668 758962 . 1 3295 0 -chrXIV 755668 759146 HC_gene_7846_tx_5 5 - 755668 759146 . 1 3479 0 -chrXIV 758363 759323 MC_gene_7529_tx_1 1 + 758363 759323 . 1 961 0 -chrXIV 759805 762829 HC_gene_7847_tx_1 6 - 759805 762829 . 1 3025 0 -chrXIV 759976 760817 MC_gene_7530_tx_1 1 + 759976 760817 . 1 842 0 -chrXIV 762596 762829 HC_gene_7847_tx_2 5 - 762596 762829 . 1 234 0 -chrXIV 762596 763082 HC_gene_7847_tx_3 1 - 762596 763082 . 1 487 0 -chrXIV 762596 763875 HC_gene_7847_tx_4 1 - 762596 763875 . 1 1280 0 -chrXIV 763389 763912 HC_gene_7531_tx_1 2 + 763389 763912 . 1 524 0 -chrXIV 764438 764977 MC_gene_7532_tx_1 1 + 764438 764977 . 1 540 0 -chrXIV 764703 769381 HC_gene_7848_tx_1 1 - 764703 769381 . 2 1159,3474 0,1205 -chrXIV 769198 770150 MC_gene_7533_tx_1 1 + 769198 770150 . 1 953 0 -chrXIV 769510 770205 MC_gene_7534_tx_1 1 + 769510 770205 . 1 696 0 -chrXIV 769733 770257 MC_gene_7535_tx_1 1 + 769733 770257 . 1 525 0 -chrXIV 770188 771507 MC_gene_7849_tx_1 1 - 770188 771507 . 1 1320 0 -chrXIV 770192 771718 MC_gene_7849_tx_2 1 - 770192 771718 . 1 1527 0 -chrXIV 770261 771611 MC_gene_7536_tx_1 1 + 770261 771611 . 1 1351 0 -chrXIV 770334 771857 MC_gene_7849_tx_3 1 - 770334 771857 . 1 1524 0 -chrXIV 771763 774430 LC_gene_7537_tx_1 1 + 771763 774430 . 1 2668 0 -chrXIV 773808 774466 MC_gene_7850_tx_1 1 - 773808 774466 . 1 659 0 -chrXIV 774659 776301 MC_gene_7851_tx_1 1 - 774659 776301 . 1 1643 0 -chrXIV 774675 775178 LC_gene_7538_tx_1 1 + 774675 775178 . 1 504 0 -chrXIV 774676 776371 MC_gene_7851_tx_2 1 - 774676 776371 . 1 1696 0 -chrXIV 775881 777319 LC_gene_7539_tx_1 1 + 775881 777319 . 1 1439 0 -chrXIV 777275 779232 MC_gene_7852_tx_1 1 - 777275 779232 . 1 1958 0 -chrXIV 777372 778020 MC_gene_7852_tx_2 1 - 777372 778020 . 1 649 0 -chrXIV 777440 778102 MC_gene_7852_tx_3 1 - 777440 778102 . 1 663 0 -chrXIV 777759 779178 MC_gene_7852_tx_4 1 - 777759 779178 . 1 1420 0 -chrXIV 779129 780204 HC_gene_7540_tx_1 1 + 779129 780204 . 1 1076 0 -chrXIV 779219 779763 HC_gene_7853_tx_1 2 - 779219 779763 . 1 545 0 -chrXIV 779906 780204 HC_gene_7540_tx_2 6 + 779906 780204 . 1 299 0 -chrXIV 781707 782419 MC_gene_7541_tx_1 1 + 781707 782419 . 1 713 0 -chrXV 1569 2180 MC_gene_8302_tx_1 1 - 1569 2180 . 1 612 0 -chrXV 2684 3055 MC_gene_7854_tx_1 1 + 2684 3055 . 1 372 0 -chrXV 2934 3447 MC_gene_8303_tx_1 1 - 2934 3447 . 1 514 0 -chrXV 3043 3873 MC_gene_8304_tx_1 1 - 3043 3873 . 1 831 0 -chrXV 3275 4051 MC_gene_7855_tx_1 1 + 3275 4051 . 1 777 0 -chrXV 3919 5158 HC_gene_8305_tx_1 1 - 3919 5158 . 1 1240 0 -chrXV 4016 5331 HC_gene_8305_tx_2 2 - 4016 5331 . 1 1316 0 -chrXV 4148 5596 LC_gene_7856_tx_1 1 + 4148 5596 . 1 1449 0 -chrXV 5416 5695 HC_gene_8306_tx_1 17 - 5416 5695 . 1 280 0 -chrXV 5416 6889 HC_gene_8306_tx_2 16 - 5416 6889 . 1 1474 0 -chrXV 5931 8228 HC_gene_7857_tx_1 6 + 5931 8228 . 1 2298 0 -chrXV 7030 8228 HC_gene_7857_tx_2 24 + 7030 8228 . 1 1199 0 -chrXV 8293 8632 HC_gene_8307_tx_1 5 - 8293 8632 . 1 340 0 -chrXV 8890 9102 HC_gene_7858_tx_1 14 + 8890 9102 . 1 213 0 -chrXV 8890 10456 HC_gene_7858_tx_2 4 + 8890 10456 . 1 1567 0 -chrXV 8890 10537 HC_gene_7858_tx_3 1 + 8890 10537 . 1 1648 0 -chrXV 8946 9688 MC_gene_8308_tx_1 1 - 8946 9688 . 1 743 0 -chrXV 13307 13965 LC_gene_8309_tx_1 1 - 13307 13965 . 1 659 0 -chrXV 14103 14869 MC_gene_7859_tx_1 1 + 14103 14869 . 1 767 0 -chrXV 14580 15538 HC_gene_8310_tx_1 1 - 14580 15538 . 1 959 0 -chrXV 14674 14988 HC_gene_8310_tx_4 13 - 14674 14988 . 1 315 0 -chrXV 14674 15538 HC_gene_8310_tx_2 3 - 14674 15538 . 1 865 0 -chrXV 14674 15595 HC_gene_8310_tx_3 10 - 14674 15595 . 1 922 0 -chrXV 14950 15400 HC_gene_7860_tx_1 2 + 14950 15400 . 1 451 0 -chrXV 15420 16618 HC_gene_8311_tx_1 2 - 15420 16618 . 1 1199 0 -chrXV 15557 16618 HC_gene_8311_tx_2 1 - 15557 16618 . 1 1062 0 -chrXV 15750 16528 HC_gene_7861_tx_1 2 + 15750 16528 . 1 779 0 -chrXV 15750 16849 HC_gene_7861_tx_2 1 + 15750 16849 . 1 1100 0 -chrXV 16718 17722 HC_gene_8312_tx_1 1 - 16718 17722 . 1 1005 0 -chrXV 16718 17815 HC_gene_8312_tx_2 1 - 16718 17815 . 1 1098 0 -chrXV 16718 18027 HC_gene_8312_tx_3 1 - 16718 18027 . 1 1310 0 -chrXV 16827 17815 HC_gene_8312_tx_4 2 - 16827 17815 . 1 989 0 -chrXV 17009 18027 HC_gene_8312_tx_5 1 - 17009 18027 . 1 1019 0 -chrXV 17080 17815 HC_gene_8312_tx_6 2 - 17080 17815 . 1 736 0 -chrXV 17081 17815 HC_gene_8312_tx_7 1 - 17081 17815 . 1 735 0 -chrXV 17090 17602 HC_gene_8312_tx_13 1 - 17090 17602 . 1 513 0 -chrXV 17094 17815 HC_gene_8312_tx_8 1 - 17094 17815 . 1 722 0 -chrXV 17097 17815 HC_gene_8312_tx_9 1 - 17097 17815 . 1 719 0 -chrXV 17106 17602 HC_gene_8312_tx_14 1 - 17106 17602 . 1 497 0 -chrXV 17106 17815 HC_gene_8312_tx_10 2 - 17106 17815 . 1 710 0 -chrXV 17110 17602 HC_gene_8312_tx_15 1 - 17110 17602 . 1 493 0 -chrXV 17216 17602 HC_gene_8312_tx_16 4 - 17216 17602 . 1 387 0 -chrXV 17216 17722 HC_gene_8312_tx_11 3 - 17216 17722 . 1 507 0 -chrXV 17216 17815 HC_gene_8312_tx_12 23 - 17216 17815 . 1 600 0 -chrXV 17216 18027 HC_gene_8312_tx_17 10 - 17216 18027 . 1 812 0 -chrXV 17946 18219 MC_gene_7862_tx_1 1 + 17946 18219 . 1 274 0 -chrXV 18130 18740 MC_gene_7863_tx_1 1 + 18130 18740 . 1 611 0 -chrXV 19154 20233 HC_gene_8313_tx_1 2 - 19154 20233 . 1 1080 0 -chrXV 19154 20644 HC_gene_8313_tx_2 4 - 19154 20644 . 1 1491 0 -chrXV 19154 21091 HC_gene_8313_tx_4 3 - 19154 21091 . 1 1938 0 -chrXV 19154 21334 HC_gene_8313_tx_5 9 - 19154 21334 . 1 2181 0 -chrXV 19154 21334 HC_gene_8313_tx_6 1 - 19154 21334 . 2 1124,297 0,1884 -chrXV 19154 21334 HC_gene_8313_tx_7 1 - 19154 21334 . 2 856,1241 0,940 -chrXV 19375 20233 HC_gene_8313_tx_10 14 - 19375 20233 . 1 859 0 -chrXV 19375 20644 HC_gene_8313_tx_3 5 - 19375 20644 . 1 1270 0 -chrXV 19375 21091 HC_gene_8313_tx_8 5 - 19375 21091 . 1 1717 0 -chrXV 19375 21334 HC_gene_8313_tx_9 61 - 19375 21334 . 1 1960 0 -chrXV 20095 21531 MC_gene_7864_tx_1 1 + 20095 21531 . 1 1437 0 -chrXV 21857 22139 HC_gene_7865_tx_1 2 + 21857 22139 . 1 283 0 -chrXV 21857 22311 HC_gene_7865_tx_2 3 + 21857 22311 . 1 455 0 -chrXV 22316 23045 MC_gene_8314_tx_1 1 - 22316 23045 . 1 730 0 -chrXV 22427 24682 MC_gene_8315_tx_1 1 - 22427 24682 . 1 2256 0 -chrXV 24346 26955 MC_gene_8316_tx_1 1 - 24346 26955 . 1 2610 0 -chrXV 24684 26693 MC_gene_8316_tx_2 1 - 24684 26693 . 1 2010 0 -chrXV 27019 27576 MC_gene_8317_tx_1 1 - 27019 27576 . 1 558 0 -chrXV 28463 33840 HC_gene_7866_tx_1 1 + 28463 33840 . 1 5378 0 -chrXV 28547 33231 HC_gene_7866_tx_2 1 + 28547 33231 . 2 2388,1941 0,2744 -chrXV 28573 29605 MC_gene_8318_tx_1 1 - 28573 29605 . 1 1033 0 -chrXV 28579 31684 MC_gene_8319_tx_1 1 - 28579 31684 . 1 3106 0 -chrXV 28583 29701 MC_gene_8318_tx_2 1 - 28583 29701 . 1 1119 0 -chrXV 29453 33526 HC_gene_7866_tx_3 1 + 29453 33526 . 1 4074 0 -chrXV 29728 33728 HC_gene_7866_tx_4 1 + 29728 33728 . 1 4001 0 -chrXV 29927 33238 HC_gene_7866_tx_5 1 + 29927 33238 . 1 3312 0 -chrXV 29927 33526 HC_gene_7866_tx_6 1 + 29927 33526 . 2 1833,1686 0,1914 -chrXV 29987 32866 HC_gene_7866_tx_7 1 + 29987 32866 . 1 2880 0 -chrXV 29987 33611 HC_gene_7866_tx_8 1 + 29987 33611 . 1 3625 0 -chrXV 30250 32183 HC_gene_7866_tx_18 1 + 30250 32183 . 1 1934 0 -chrXV 30250 33611 HC_gene_7866_tx_9 1 + 30250 33611 . 2 1594,1180 0,2182 -chrXV 30513 33228 HC_gene_7866_tx_10 1 + 30513 33228 . 1 2716 0 -chrXV 30573 32183 HC_gene_7866_tx_19 1 + 30573 32183 . 1 1611 0 -chrXV 30696 33840 HC_gene_7866_tx_11 2 + 30696 33840 . 1 3145 0 -chrXV 30827 33611 HC_gene_7866_tx_12 1 + 30827 33611 . 1 2785 0 -chrXV 31088 33526 HC_gene_7866_tx_13 2 + 31088 33526 . 1 2439 0 -chrXV 31152 33611 HC_gene_7866_tx_14 1 + 31152 33611 . 2 171,2070 0,390 -chrXV 31229 32183 HC_gene_7866_tx_20 1 + 31229 32183 . 1 955 0 -chrXV 31229 33526 HC_gene_7866_tx_15 1 + 31229 33526 . 1 2298 0 -chrXV 31229 33611 HC_gene_7866_tx_16 1 + 31229 33611 . 1 2383 0 -chrXV 31229 33840 HC_gene_7866_tx_17 1 + 31229 33840 . 1 2612 0 -chrXV 32330 33235 HC_gene_7866_tx_21 1 + 32330 33235 . 1 906 0 -chrXV 32330 33526 HC_gene_7866_tx_22 1 + 32330 33526 . 1 1197 0 -chrXV 32330 33611 HC_gene_7866_tx_23 2 + 32330 33611 . 1 1282 0 -chrXV 32330 33728 HC_gene_7866_tx_24 1 + 32330 33728 . 1 1399 0 -chrXV 32330 33840 HC_gene_7866_tx_25 1 + 32330 33840 . 1 1511 0 -chrXV 34382 35505 HC_gene_7867_tx_1 6 + 34382 35505 . 1 1124 0 -chrXV 34509 35644 HC_gene_8320_tx_1 2 - 34509 35644 . 1 1136 0 -chrXV 36034 38730 HC_gene_7868_tx_1 2 + 36034 38730 . 1 2697 0 -chrXV 36749 38613 HC_gene_8321_tx_1 1 - 36749 38613 . 1 1865 0 -chrXV 38788 38984 HC_gene_7869_tx_1 1 + 38788 38984 . 1 197 0 -chrXV 38788 39064 HC_gene_7869_tx_2 2 + 38788 39064 . 1 277 0 -chrXV 38858 39656 HC_gene_8322_tx_1 4 - 38858 39656 . 1 799 0 -chrXV 38858 40216 HC_gene_8322_tx_3 1 - 38858 40216 . 1 1359 0 -chrXV 38992 39656 HC_gene_8322_tx_2 1 - 38992 39656 . 1 665 0 -chrXV 39858 40813 HC_gene_7870_tx_1 3 + 39858 40813 . 1 956 0 -chrXV 40681 43116 MC_gene_8323_tx_1 1 - 40681 43116 . 1 2436 0 -chrXV 40989 42737 HC_gene_7871_tx_1 1 + 40989 42737 . 1 1749 0 -chrXV 42496 43339 MC_gene_8324_tx_1 1 - 42496 43339 . 1 844 0 -chrXV 43433 44714 MC_gene_8325_tx_1 1 - 43433 44714 . 1 1282 0 -chrXV 43570 44401 MC_gene_8325_tx_2 1 - 43570 44401 . 1 832 0 -chrXV 43673 44783 HC_gene_7872_tx_1 108 + 43673 44783 . 1 1111 0 -chrXV 43907 44783 HC_gene_7872_tx_2 14 + 43907 44783 . 1 877 0 -chrXV 44055 44783 HC_gene_7872_tx_3 14 + 44055 44783 . 1 729 0 -chrXV 44158 44783 HC_gene_7872_tx_4 11 + 44158 44783 . 1 626 0 -chrXV 44918 45754 HC_gene_7873_tx_1 44 + 44918 45754 . 1 837 0 -chrXV 44918 45754 HC_gene_7873_tx_2 1 + 44918 45754 . 2 194,590 0,247 -chrXV 45127 45754 HC_gene_7873_tx_3 30 + 45127 45754 . 1 628 0 -chrXV 45648 46169 HC_gene_8326_tx_1 4 - 45648 46169 . 1 522 0 -chrXV 45648 47618 HC_gene_8326_tx_2 9 - 45648 47618 . 1 1971 0 -chrXV 45862 47255 LC_gene_7874_tx_1 1 + 45862 47255 . 1 1394 0 -chrXV 47786 48665 HC_gene_8327_tx_1 90 - 47786 48665 . 1 880 0 -chrXV 47786 48665 HC_gene_8327_tx_2 1 - 47786 48665 . 2 607,226 0,654 -chrXV 48850 49510 HC_gene_7875_tx_1 59 + 48850 49510 . 1 661 0 -chrXV 49437 49910 HC_gene_8328_tx_1 37 - 49437 49910 . 1 474 0 -chrXV 49437 50067 HC_gene_8328_tx_2 6 - 49437 50067 . 1 631 0 -chrXV 49437 50138 HC_gene_8328_tx_3 12 - 49437 50138 . 1 702 0 -chrXV 49437 50222 HC_gene_8328_tx_4 8 - 49437 50222 . 1 786 0 -chrXV 49437 50461 HC_gene_8328_tx_5 11 - 49437 50461 . 1 1025 0 -chrXV 49437 51096 HC_gene_8328_tx_6 3 - 49437 51096 . 1 1660 0 -chrXV 49437 51228 HC_gene_8328_tx_7 3 - 49437 51228 . 1 1792 0 -chrXV 49437 51622 HC_gene_8328_tx_8 2 - 49437 51622 . 1 2186 0 -chrXV 49437 52839 HC_gene_8328_tx_9 13 - 49437 52839 . 1 3403 0 -chrXV 49437 52839 HC_gene_8328_tx_10 1 - 49437 52839 . 2 504,2848 0,555 -chrXV 49437 52839 HC_gene_8328_tx_11 1 - 49437 52839 . 2 2314,240 0,3163 -chrXV 49437 52839 HC_gene_8328_tx_12 1 - 49437 52839 . 2 872,2479 0,924 -chrXV 52971 54427 LC_gene_8329_tx_1 1 - 52971 54427 . 1 1457 0 -chrXV 53075 54593 HC_gene_7876_tx_1 37 + 53075 54593 . 1 1519 0 -chrXV 53075 54593 HC_gene_7876_tx_2 1 + 53075 54593 . 2 418,947 0,572 -chrXV 53367 54593 HC_gene_7876_tx_3 5 + 53367 54593 . 1 1227 0 -chrXV 53609 54593 HC_gene_7876_tx_4 1 + 53609 54593 . 2 256,539 0,446 -chrXV 53609 54593 HC_gene_7876_tx_5 5 + 53609 54593 . 1 985 0 -chrXV 54522 54871 HC_gene_8330_tx_1 55 - 54522 54871 . 1 350 0 -chrXV 54522 54990 HC_gene_8330_tx_2 42 - 54522 54990 . 1 469 0 -chrXV 54522 55148 HC_gene_8330_tx_4 329 - 54522 55148 . 1 627 0 -chrXV 54605 54990 HC_gene_8330_tx_3 5 - 54605 54990 . 1 386 0 -chrXV 54605 55148 HC_gene_8330_tx_5 80 - 54605 55148 . 1 544 0 -chrXV 55544 56345 HC_gene_7877_tx_1 77 + 55544 56345 . 1 802 0 -chrXV 55678 56345 HC_gene_7877_tx_2 20 + 55678 56345 . 1 668 0 -chrXV 55985 56345 HC_gene_7877_tx_3 14 + 55985 56345 . 1 361 0 -chrXV 56423 60118 HC_gene_7878_tx_1 1 + 56423 60118 . 2 1368,2275 0,1421 -chrXV 56423 60118 HC_gene_7878_tx_2 1 + 56423 60118 . 1 3696 0 -chrXV 57852 60096 LC_gene_8331_tx_1 1 - 57852 60096 . 1 2245 0 -chrXV 58710 60118 HC_gene_7878_tx_3 86 + 58710 60118 . 1 1409 0 -chrXV 58710 60118 HC_gene_7878_tx_4 1 + 58710 60118 . 2 701,135 0,1274 -chrXV 58929 60118 HC_gene_7878_tx_5 10 + 58929 60118 . 1 1190 0 -chrXV 59094 60118 HC_gene_7878_tx_6 11 + 59094 60118 . 1 1025 0 -chrXV 60294 60688 HC_gene_8332_tx_1 114 - 60294 60688 . 1 395 0 -chrXV 60294 60851 HC_gene_8332_tx_2 89 - 60294 60851 . 1 558 0 -chrXV 60294 61084 HC_gene_8332_tx_3 676 - 60294 61084 . 1 791 0 -chrXV 61280 65125 HC_gene_8333_tx_1 1 - 61280 65125 . 2 2141,1296 0,2550 -chrXV 61280 65380 HC_gene_8333_tx_2 2 - 61280 65380 . 1 4101 0 -chrXV 61350 61762 LC_gene_7879_tx_1 1 + 61350 61762 . 1 413 0 -chrXV 65564 66124 HC_gene_7880_tx_1 4 + 65564 66124 . 1 561 0 -chrXV 65564 66197 HC_gene_7880_tx_2 1 + 65564 66197 . 1 634 0 -chrXV 65564 67326 HC_gene_7880_tx_3 25 + 65564 67326 . 1 1763 0 -chrXV 65564 67326 HC_gene_7880_tx_4 1 + 65564 67326 . 2 953,729 0,1034 -chrXV 65564 67326 HC_gene_7880_tx_5 1 + 65564 67326 . 2 481,1178 0,585 -chrXV 65804 66124 HC_gene_7880_tx_9 1 + 65804 66124 . 1 321 0 -chrXV 65804 66662 HC_gene_7880_tx_10 1 + 65804 66662 . 1 859 0 -chrXV 65804 67326 HC_gene_7880_tx_6 2 + 65804 67326 . 1 1523 0 -chrXV 65958 67208 HC_gene_7880_tx_7 1 + 65958 67208 . 1 1251 0 -chrXV 65958 67326 HC_gene_7880_tx_8 2 + 65958 67326 . 1 1369 0 -chrXV 67091 68976 HC_gene_8334_tx_1 4 - 67091 68976 . 1 1886 0 -chrXV 67225 67541 HC_gene_8334_tx_10 38 - 67225 67541 . 1 317 0 -chrXV 67225 68748 HC_gene_8334_tx_2 11 - 67225 68748 . 1 1524 0 -chrXV 67225 68976 HC_gene_8334_tx_3 150 - 67225 68976 . 1 1752 0 -chrXV 67225 68976 HC_gene_8334_tx_4 1 - 67225 68976 . 2 1300,208 0,1544 -chrXV 67225 68976 HC_gene_8334_tx_5 1 - 67225 68976 . 2 1437,208 0,1544 -chrXV 67225 68976 HC_gene_8334_tx_6 1 - 67225 68976 . 2 934,754 0,998 -chrXV 67225 68976 HC_gene_8334_tx_7 1 - 67225 68976 . 2 515,1040 0,712 -chrXV 67225 68976 HC_gene_8334_tx_8 1 - 67225 68976 . 2 801,886 0,866 -chrXV 67225 68976 HC_gene_8334_tx_9 1 - 67225 68976 . 2 275,1171 0,581 -chrXV 69213 70056 HC_gene_8335_tx_1 23 - 69213 70056 . 1 844 0 -chrXV 69402 69746 MC_gene_7881_tx_1 1 + 69402 69746 . 1 345 0 -chrXV 70290 70860 HC_gene_7882_tx_1 7 + 70290 70860 . 1 571 0 -chrXV 70290 71062 HC_gene_7882_tx_2 137 + 70290 71062 . 1 773 0 -chrXV 70581 71062 HC_gene_7882_tx_3 20 + 70581 71062 . 1 482 0 -chrXV 71544 72302 HC_gene_8336_tx_1 1 - 71544 72302 . 1 759 0 -chrXV 71666 72302 HC_gene_8336_tx_2 3 - 71666 72302 . 1 637 0 -chrXV 72437 72777 HC_gene_7883_tx_1 2 + 72437 72777 . 1 341 0 -chrXV 73025 73758 MC_gene_7884_tx_1 1 + 73025 73758 . 1 734 0 -chrXV 73445 73897 HC_gene_8337_tx_1 2 - 73445 73897 . 1 453 0 -chrXV 73514 73897 HC_gene_8337_tx_2 1 - 73514 73897 . 1 384 0 -chrXV 74170 77352 HC_gene_7885_tx_1 1 + 74170 77352 . 2 52,1818 0,1365 -chrXV 74170 77352 HC_gene_7885_tx_2 3 + 74170 77352 . 1 3183 0 -chrXV 74170 77352 HC_gene_7885_tx_3 1 + 74170 77352 . 2 2408,638 0,2545 -chrXV 76704 77352 HC_gene_7885_tx_4 10 + 76704 77352 . 1 649 0 -chrXV 77263 77762 MC_gene_8338_tx_1 1 - 77263 77762 . 1 500 0 -chrXV 77533 78265 HC_gene_7886_tx_1 338 + 77533 78265 . 1 733 0 -chrXV 77698 78265 HC_gene_7886_tx_2 37 + 77698 78265 . 1 568 0 -chrXV 77820 78265 HC_gene_7886_tx_3 56 + 77820 78265 . 1 446 0 -chrXV 78144 78407 HC_gene_8339_tx_1 15 - 78144 78407 . 1 264 0 -chrXV 78312 79702 LC_gene_7887_tx_1 1 + 78312 79702 . 1 1391 0 -chrXV 79491 79812 MC_gene_8340_tx_1 1 - 79491 79812 . 1 322 0 -chrXV 80326 81272 HC_gene_7888_tx_1 81 + 80326 81272 . 2 35,498 0,449 -chrXV 80326 81272 HC_gene_7888_tx_2 59 + 80326 81272 . 2 44,488 0,459 -chrXV 80326 81272 HC_gene_7888_tx_3 55 + 80326 81272 . 1 947 0 -chrXV 80828 81272 HC_gene_7888_tx_4 2196 + 80828 81272 . 1 445 0 -chrXV 81378 82997 MC_gene_8341_tx_1 1 - 81378 82997 . 1 1620 0 -chrXV 81542 83098 MC_gene_8341_tx_2 1 - 81542 83098 . 1 1557 0 -chrXV 81544 81972 MC_gene_8341_tx_4 1 - 81544 81972 . 1 429 0 -chrXV 81546 81824 MC_gene_8341_tx_5 1 - 81546 81824 . 1 279 0 -chrXV 81546 82842 MC_gene_8341_tx_3 1 - 81546 82842 . 1 1297 0 -chrXV 82554 83057 LC_gene_7889_tx_1 1 + 82554 83057 . 1 504 0 -chrXV 83480 83822 HC_gene_7890_tx_1 8 + 83480 83822 . 1 343 0 -chrXV 83480 85291 HC_gene_7890_tx_2 1 + 83480 85291 . 1 1812 0 -chrXV 83728 84395 LC_gene_8342_tx_1 1 - 83728 84395 . 1 668 0 -chrXV 83789 85291 HC_gene_7890_tx_3 30 + 83789 85291 . 1 1503 0 -chrXV 83789 85387 HC_gene_7890_tx_4 7 + 83789 85387 . 1 1599 0 -chrXV 83992 85291 HC_gene_7890_tx_5 6 + 83992 85291 . 1 1300 0 -chrXV 83992 85387 HC_gene_7890_tx_6 2 + 83992 85387 . 1 1396 0 -chrXV 84655 85291 HC_gene_7890_tx_7 6 + 84655 85291 . 1 637 0 -chrXV 84655 85387 HC_gene_7890_tx_8 1 + 84655 85387 . 1 733 0 -chrXV 85203 86785 HC_gene_8343_tx_1 1 - 85203 86785 . 1 1583 0 -chrXV 85298 86546 HC_gene_8343_tx_2 3 - 85298 86546 . 1 1249 0 -chrXV 85298 86785 HC_gene_8343_tx_3 18 - 85298 86785 . 1 1488 0 -chrXV 85298 86785 HC_gene_8343_tx_4 1 - 85298 86785 . 2 704,494 0,994 -chrXV 85360 86546 HC_gene_8343_tx_5 3 - 85360 86546 . 1 1187 0 -chrXV 85360 86785 HC_gene_8343_tx_6 59 - 85360 86785 . 1 1426 0 -chrXV 85360 86785 HC_gene_8343_tx_7 1 - 85360 86785 . 2 555,802 0,624 -chrXV 85360 86785 HC_gene_8343_tx_8 1 - 85360 86785 . 2 779,351 0,1075 -chrXV 85360 86785 HC_gene_8343_tx_9 1 - 85360 86785 . 2 610,770 0,656 -chrXV 85360 86785 HC_gene_8343_tx_10 1 - 85360 86785 . 2 160,1207 0,219 -chrXV 87477 87787 HC_gene_7891_tx_1 1 + 87477 87787 . 1 311 0 -chrXV 87477 87788 HC_gene_7891_tx_2 1 + 87477 87788 . 1 312 0 -chrXV 87477 87789 HC_gene_7891_tx_3 3 + 87477 87789 . 1 313 0 -chrXV 87477 87793 HC_gene_7891_tx_4 2 + 87477 87793 . 1 317 0 -chrXV 87477 87795 HC_gene_7891_tx_5 2 + 87477 87795 . 1 319 0 -chrXV 87477 87796 HC_gene_7891_tx_6 1 + 87477 87796 . 1 320 0 -chrXV 87477 87797 HC_gene_7891_tx_7 1 + 87477 87797 . 1 321 0 -chrXV 87477 87801 HC_gene_7891_tx_8 3 + 87477 87801 . 1 325 0 -chrXV 87477 87803 HC_gene_7891_tx_9 3 + 87477 87803 . 1 327 0 -chrXV 87477 87804 HC_gene_7891_tx_10 1 + 87477 87804 . 1 328 0 -chrXV 87477 87805 HC_gene_7891_tx_11 8 + 87477 87805 . 1 329 0 -chrXV 87477 87806 HC_gene_7891_tx_12 1 + 87477 87806 . 1 330 0 -chrXV 87477 87807 HC_gene_7891_tx_13 8 + 87477 87807 . 1 331 0 -chrXV 87477 87808 HC_gene_7891_tx_14 1 + 87477 87808 . 1 332 0 -chrXV 87477 87810 HC_gene_7891_tx_15 3 + 87477 87810 . 1 334 0 -chrXV 87477 87812 HC_gene_7891_tx_16 1 + 87477 87812 . 1 336 0 -chrXV 87477 87816 HC_gene_7891_tx_17 1 + 87477 87816 . 1 340 0 -chrXV 87477 87818 HC_gene_7891_tx_18 1 + 87477 87818 . 1 342 0 -chrXV 87477 87820 HC_gene_7891_tx_19 3 + 87477 87820 . 1 344 0 -chrXV 87477 87822 HC_gene_7891_tx_20 1 + 87477 87822 . 1 346 0 -chrXV 87477 87823 HC_gene_7891_tx_21 1 + 87477 87823 . 1 347 0 -chrXV 87477 87824 HC_gene_7891_tx_22 1 + 87477 87824 . 1 348 0 -chrXV 87477 87825 HC_gene_7891_tx_23 2 + 87477 87825 . 1 349 0 -chrXV 87477 87827 HC_gene_7891_tx_24 1 + 87477 87827 . 1 351 0 -chrXV 87477 87829 HC_gene_7891_tx_25 4 + 87477 87829 . 1 353 0 -chrXV 87477 87830 HC_gene_7891_tx_26 1 + 87477 87830 . 1 354 0 -chrXV 87477 87832 HC_gene_7891_tx_27 1 + 87477 87832 . 1 356 0 -chrXV 87477 87833 HC_gene_7891_tx_28 1 + 87477 87833 . 1 357 0 -chrXV 87477 87834 HC_gene_7891_tx_29 3 + 87477 87834 . 1 358 0 -chrXV 87477 87835 HC_gene_7891_tx_30 2 + 87477 87835 . 1 359 0 -chrXV 87477 87836 HC_gene_7891_tx_31 1 + 87477 87836 . 1 360 0 -chrXV 87477 87837 HC_gene_7891_tx_32 2 + 87477 87837 . 1 361 0 -chrXV 87477 87838 HC_gene_7891_tx_33 1 + 87477 87838 . 1 362 0 -chrXV 87477 87844 HC_gene_7891_tx_34 1 + 87477 87844 . 1 368 0 -chrXV 87477 87846 HC_gene_7891_tx_35 1 + 87477 87846 . 1 370 0 -chrXV 87477 87847 HC_gene_7891_tx_36 2 + 87477 87847 . 1 371 0 -chrXV 87477 87849 HC_gene_7891_tx_37 1 + 87477 87849 . 1 373 0 -chrXV 87477 87850 HC_gene_7891_tx_38 1 + 87477 87850 . 1 374 0 -chrXV 87477 87851 HC_gene_7891_tx_39 4 + 87477 87851 . 1 375 0 -chrXV 87477 87854 HC_gene_7891_tx_40 2 + 87477 87854 . 1 378 0 -chrXV 87477 87855 HC_gene_7891_tx_41 1 + 87477 87855 . 1 379 0 -chrXV 87477 87858 HC_gene_7891_tx_42 4 + 87477 87858 . 1 382 0 -chrXV 87477 87860 HC_gene_7891_tx_43 1 + 87477 87860 . 1 384 0 -chrXV 87477 87861 HC_gene_7891_tx_44 3 + 87477 87861 . 1 385 0 -chrXV 87477 87864 HC_gene_7891_tx_45 1 + 87477 87864 . 1 388 0 -chrXV 87477 87865 HC_gene_7891_tx_46 1 + 87477 87865 . 1 389 0 -chrXV 87477 87872 HC_gene_7891_tx_47 1 + 87477 87872 . 1 396 0 -chrXV 87477 87875 HC_gene_7891_tx_48 1 + 87477 87875 . 1 399 0 -chrXV 87477 87876 HC_gene_7891_tx_49 1 + 87477 87876 . 1 400 0 -chrXV 87477 87878 HC_gene_7891_tx_50 1 + 87477 87878 . 1 402 0 -chrXV 87477 88049 HC_gene_7891_tx_51 3 + 87477 88049 . 1 573 0 -chrXV 87477 88051 HC_gene_7891_tx_52 1 + 87477 88051 . 1 575 0 -chrXV 87477 88052 HC_gene_7891_tx_53 1 + 87477 88052 . 1 576 0 -chrXV 87477 88054 HC_gene_7891_tx_54 1 + 87477 88054 . 1 578 0 -chrXV 87477 88055 HC_gene_7891_tx_55 3 + 87477 88055 . 1 579 0 -chrXV 87477 88056 HC_gene_7891_tx_56 1 + 87477 88056 . 1 580 0 -chrXV 87477 88059 HC_gene_7891_tx_57 3 + 87477 88059 . 1 583 0 -chrXV 87477 88061 HC_gene_7891_tx_58 1 + 87477 88061 . 1 585 0 -chrXV 87477 88074 HC_gene_7891_tx_59 2 + 87477 88074 . 1 598 0 -chrXV 87477 88076 HC_gene_7891_tx_60 1 + 87477 88076 . 1 600 0 -chrXV 87477 88078 HC_gene_7891_tx_61 2 + 87477 88078 . 1 602 0 -chrXV 87477 88081 HC_gene_7891_tx_62 1 + 87477 88081 . 1 605 0 -chrXV 87477 88082 HC_gene_7891_tx_63 1 + 87477 88082 . 1 606 0 -chrXV 87591 87801 HC_gene_7891_tx_64 1 + 87591 87801 . 1 211 0 -chrXV 87591 87845 HC_gene_7891_tx_65 1 + 87591 87845 . 1 255 0 -chrXV 87694 88060 HC_gene_7891_tx_66 1 + 87694 88060 . 1 367 0 -chrXV 88445 89588 HC_gene_7892_tx_1 24 + 88445 89588 . 1 1144 0 -chrXV 88642 89588 HC_gene_7892_tx_2 30 + 88642 89588 . 1 947 0 -chrXV 88873 89588 HC_gene_7892_tx_3 14 + 88873 89588 . 1 716 0 -chrXV 88929 89588 HC_gene_7892_tx_4 38 + 88929 89588 . 1 660 0 -chrXV 89078 89588 HC_gene_7892_tx_5 31 + 89078 89588 . 1 511 0 -chrXV 89492 90854 HC_gene_8344_tx_1 8 - 89492 90854 . 1 1363 0 -chrXV 89492 91456 HC_gene_8344_tx_2 19 - 89492 91456 . 1 1965 0 -chrXV 89492 91456 HC_gene_8344_tx_3 1 - 89492 91456 . 2 694,1220 0,745 -chrXV 89492 91669 HC_gene_8344_tx_4 1 - 89492 91669 . 1 2178 0 -chrXV 90867 91572 MC_gene_7893_tx_1 1 + 90867 91572 . 1 706 0 -chrXV 91652 92044 HC_gene_7894_tx_1 1 + 91652 92044 . 1 393 0 -chrXV 91939 92201 HC_gene_8345_tx_1 102 - 91939 92201 . 1 263 0 -chrXV 91939 92308 HC_gene_8345_tx_2 225 - 91939 92308 . 1 370 0 -chrXV 91939 92438 HC_gene_8345_tx_3 1343 - 91939 92438 . 1 500 0 -chrXV 91939 92871 HC_gene_8345_tx_4 249 - 91939 92871 . 2 502,41 0,892 -chrXV 91939 92871 HC_gene_8345_tx_5 55 - 91939 92871 . 1 933 0 -chrXV 91939 92871 HC_gene_8345_tx_6 8 - 91939 92871 . 2 502,45 0,888 -chrXV 92072 92425 LC_gene_7895_tx_1 1 + 92072 92425 . 1 354 0 -chrXV 93304 93805 HC_gene_8346_tx_1 1159 - 93304 93805 . 1 502 0 -chrXV 93304 94420 HC_gene_8346_tx_2 3279 - 93304 94420 . 2 540,130 0,987 -chrXV 93304 94420 HC_gene_8346_tx_3 7 - 93304 94420 . 2 540,121 0,996 -chrXV 93304 94420 HC_gene_8346_tx_4 78 - 93304 94420 . 1 1117 0 -chrXV 93304 94420 HC_gene_8346_tx_5 51 - 93304 94420 . 2 533,122 0,995 -chrXV 93304 94420 HC_gene_8346_tx_6 52 - 93304 94420 . 2 533,137 0,980 -chrXV 93304 94420 HC_gene_8346_tx_7 37 - 93304 94420 . 2 533,127 0,990 -chrXV 93304 94420 HC_gene_8346_tx_8 29 - 93304 94420 . 2 540,134 0,983 -chrXV 93304 94420 HC_gene_8346_tx_9 5 - 93304 94420 . 2 533,138 0,979 -chrXV 93304 94420 HC_gene_8346_tx_10 17 - 93304 94420 . 2 540,122 0,995 -chrXV 93304 94420 HC_gene_8346_tx_11 6 - 93304 94420 . 2 533,129 0,988 -chrXV 93304 94420 HC_gene_8346_tx_12 13 - 93304 94420 . 2 533,118 0,999 -chrXV 93304 94420 HC_gene_8346_tx_13 5 - 93304 94420 . 2 514,130 0,987 -chrXV 93304 94420 HC_gene_8346_tx_14 5 - 93304 94420 . 2 533,136 0,981 -chrXV 94158 94420 HC_gene_8346_tx_15 31 - 94158 94420 . 1 263 0 -chrXV 94707 96430 HC_gene_8347_tx_1 58 - 94707 96430 . 1 1724 0 -chrXV 94707 96430 HC_gene_8347_tx_2 1 - 94707 96430 . 2 706,966 0,758 -chrXV 94707 96430 HC_gene_8347_tx_3 1 - 94707 96430 . 2 1223,200 0,1524 -chrXV 94707 96430 HC_gene_8347_tx_4 1 - 94707 96430 . 2 537,580 0,1144 -chrXV 94832 96430 HC_gene_8347_tx_5 29 - 94832 96430 . 1 1599 0 -chrXV 94832 96430 HC_gene_8347_tx_6 1 - 94832 96430 . 2 558,76 0,1523 -chrXV 94832 96430 HC_gene_8347_tx_7 1 - 94832 96430 . 2 373,1163 0,436 -chrXV 94832 96430 HC_gene_8347_tx_8 1 - 94832 96430 . 2 581,469 0,1130 -chrXV 96598 97383 MC_gene_8348_tx_1 1 - 96598 97383 . 1 786 0 -chrXV 96652 97058 HC_gene_7896_tx_1 2 + 96652 97058 . 1 407 0 -chrXV 96652 97059 HC_gene_7896_tx_2 1 + 96652 97059 . 1 408 0 -chrXV 96652 97060 HC_gene_7896_tx_3 2 + 96652 97060 . 1 409 0 -chrXV 96652 97061 HC_gene_7896_tx_4 1 + 96652 97061 . 1 410 0 -chrXV 96652 97069 HC_gene_7896_tx_5 1 + 96652 97069 . 1 418 0 -chrXV 96652 97078 HC_gene_7896_tx_6 1 + 96652 97078 . 1 427 0 -chrXV 96652 97087 HC_gene_7896_tx_7 1 + 96652 97087 . 1 436 0 -chrXV 96652 97090 HC_gene_7896_tx_8 1 + 96652 97090 . 1 439 0 -chrXV 96652 97096 HC_gene_7896_tx_9 2 + 96652 97096 . 1 445 0 -chrXV 96652 97098 HC_gene_7896_tx_10 1 + 96652 97098 . 1 447 0 -chrXV 96652 97099 HC_gene_7896_tx_11 1 + 96652 97099 . 1 448 0 -chrXV 96652 97101 HC_gene_7896_tx_12 3 + 96652 97101 . 1 450 0 -chrXV 96652 97103 HC_gene_7896_tx_13 2 + 96652 97103 . 1 452 0 -chrXV 96652 97105 HC_gene_7896_tx_14 4 + 96652 97105 . 1 454 0 -chrXV 96652 97106 HC_gene_7896_tx_15 4 + 96652 97106 . 1 455 0 -chrXV 96652 97107 HC_gene_7896_tx_16 2 + 96652 97107 . 1 456 0 -chrXV 96652 97131 HC_gene_7896_tx_17 1 + 96652 97131 . 1 480 0 -chrXV 96652 97145 HC_gene_7896_tx_18 1 + 96652 97145 . 1 494 0 -chrXV 96652 97152 HC_gene_7896_tx_19 1 + 96652 97152 . 1 501 0 -chrXV 96652 97155 HC_gene_7896_tx_20 1 + 96652 97155 . 1 504 0 -chrXV 96652 97157 HC_gene_7896_tx_21 1 + 96652 97157 . 1 506 0 -chrXV 96652 97158 HC_gene_7896_tx_22 1 + 96652 97158 . 1 507 0 -chrXV 96652 97159 HC_gene_7896_tx_23 1 + 96652 97159 . 1 508 0 -chrXV 96652 97160 HC_gene_7896_tx_24 1 + 96652 97160 . 1 509 0 -chrXV 96652 97161 HC_gene_7896_tx_25 1 + 96652 97161 . 1 510 0 -chrXV 96652 97163 HC_gene_7896_tx_26 1 + 96652 97163 . 1 512 0 -chrXV 96652 97261 HC_gene_7896_tx_27 25 + 96652 97261 . 1 610 0 -chrXV 96652 97261 HC_gene_7896_tx_28 1 + 96652 97261 . 2 304,231 0,379 -chrXV 96652 97315 HC_gene_7896_tx_29 5 + 96652 97315 . 1 664 0 -chrXV 96652 97368 HC_gene_7896_tx_30 9 + 96652 97368 . 1 717 0 -chrXV 97513 99132 HC_gene_7897_tx_1 1 + 97513 99132 . 2 752,821 0,799 -chrXV 97513 99151 HC_gene_7897_tx_2 1 + 97513 99151 . 1 1639 0 -chrXV 97513 99584 HC_gene_7897_tx_3 2 + 97513 99584 . 1 2072 0 -chrXV 99677 101264 HC_gene_7898_tx_1 10 + 99677 101264 . 1 1588 0 -chrXV 99889 100581 LC_gene_8349_tx_1 1 - 99889 100581 . 1 693 0 -chrXV 100088 101264 HC_gene_7898_tx_2 2 + 100088 101264 . 1 1177 0 -chrXV 100819 101301 HC_gene_8350_tx_1 5 - 100819 101301 . 1 483 0 -chrXV 101027 101301 HC_gene_8350_tx_2 3 - 101027 101301 . 1 275 0 -chrXV 101027 101432 HC_gene_8350_tx_3 2 - 101027 101432 . 1 406 0 -chrXV 101481 101764 HC_gene_7899_tx_1 21 + 101481 101764 . 1 284 0 -chrXV 102887 103350 HC_gene_7900_tx_1 6 + 102887 103350 . 1 464 0 -chrXV 102952 103350 HC_gene_7900_tx_2 13 + 102952 103350 . 1 399 0 -chrXV 103275 103580 HC_gene_8351_tx_1 1 - 103275 103580 . 1 306 0 -chrXV 103275 103943 HC_gene_8351_tx_2 9 - 103275 103943 . 1 669 0 -chrXV 104296 106383 HC_gene_7901_tx_1 8 + 104296 106383 . 1 2088 0 -chrXV 104609 106383 HC_gene_7901_tx_2 3 + 104609 106383 . 1 1775 0 -chrXV 104779 106383 HC_gene_7901_tx_3 1 + 104779 106383 . 2 964,596 0,1009 -chrXV 104779 106383 HC_gene_7901_tx_4 2 + 104779 106383 . 1 1605 0 -chrXV 104814 106052 LC_gene_8352_tx_1 1 - 104814 106052 . 1 1239 0 -chrXV 104967 106383 HC_gene_7901_tx_5 1 + 104967 106383 . 1 1417 0 -chrXV 104967 106383 HC_gene_7901_tx_6 1 + 104967 106383 . 2 755,618 0,799 -chrXV 106279 106716 MC_gene_8353_tx_1 1 - 106279 106716 . 1 438 0 -chrXV 106429 108286 HC_gene_7902_tx_1 1 + 106429 108286 . 2 619,1165 0,693 -chrXV 106528 108286 HC_gene_7902_tx_2 28 + 106528 108286 . 1 1759 0 -chrXV 106528 108286 HC_gene_7902_tx_3 1 + 106528 108286 . 2 999,710 0,1049 -chrXV 106528 108286 HC_gene_7902_tx_4 1 + 106528 108286 . 2 888,692 0,1067 -chrXV 106528 108286 HC_gene_7902_tx_5 1 + 106528 108286 . 2 253,926 0,833 -chrXV 106644 108286 HC_gene_7902_tx_6 1 + 106644 108286 . 1 1643 0 -chrXV 107574 108286 HC_gene_7902_tx_7 16 + 107574 108286 . 1 713 0 -chrXV 108084 108772 HC_gene_8354_tx_1 1 - 108084 108772 . 1 689 0 -chrXV 108084 108946 HC_gene_8354_tx_3 5 - 108084 108946 . 1 863 0 -chrXV 108186 108772 HC_gene_8354_tx_2 23 - 108186 108772 . 1 587 0 -chrXV 108186 108946 HC_gene_8354_tx_4 157 - 108186 108946 . 1 761 0 -chrXV 108186 108946 HC_gene_8354_tx_5 1 - 108186 108946 . 2 529,144 0,617 -chrXV 108186 108946 HC_gene_8354_tx_6 1 - 108186 108946 . 2 399,233 0,528 -chrXV 108186 108946 HC_gene_8354_tx_7 1 - 108186 108946 . 2 595,111 0,650 -chrXV 108186 108946 HC_gene_8354_tx_8 1 - 108186 108946 . 2 552,144 0,617 -chrXV 108186 108946 HC_gene_8354_tx_9 1 - 108186 108946 . 3 184,196,233 0,254,528 -chrXV 108186 108946 HC_gene_8354_tx_10 1 - 108186 108946 . 2 277,307 0,454 -chrXV 109163 110040 HC_gene_7903_tx_1 35 + 109163 110040 . 1 878 0 -chrXV 109163 110165 HC_gene_7903_tx_2 5 + 109163 110165 . 1 1003 0 -chrXV 110240 110794 HC_gene_7904_tx_1 50 + 110240 110794 . 1 555 0 -chrXV 110240 110794 HC_gene_7904_tx_2 1 + 110240 110794 . 2 166,338 0,217 -chrXV 110240 110795 HC_gene_7904_tx_3 29 + 110240 110795 . 1 556 0 -chrXV 110240 110796 HC_gene_7904_tx_4 25 + 110240 110796 . 1 557 0 -chrXV 110240 110797 HC_gene_7904_tx_5 98 + 110240 110797 . 1 558 0 -chrXV 110240 110798 HC_gene_7904_tx_6 55 + 110240 110798 . 1 559 0 -chrXV 110240 110799 HC_gene_7904_tx_7 33 + 110240 110799 . 1 560 0 -chrXV 110240 110800 HC_gene_7904_tx_8 92 + 110240 110800 . 1 561 0 -chrXV 110240 110800 HC_gene_7904_tx_9 1 + 110240 110800 . 2 424,66 0,495 -chrXV 110240 110801 HC_gene_7904_tx_10 63 + 110240 110801 . 1 562 0 -chrXV 110240 110802 HC_gene_7904_tx_11 21 + 110240 110802 . 1 563 0 -chrXV 110240 110803 HC_gene_7904_tx_12 127 + 110240 110803 . 1 564 0 -chrXV 110240 110803 HC_gene_7904_tx_13 1 + 110240 110803 . 2 424,36 0,528 -chrXV 110240 110804 HC_gene_7904_tx_14 65 + 110240 110804 . 1 565 0 -chrXV 110240 110805 HC_gene_7904_tx_15 30 + 110240 110805 . 1 566 0 -chrXV 110240 110806 HC_gene_7904_tx_16 119 + 110240 110806 . 1 567 0 -chrXV 110240 110807 HC_gene_7904_tx_17 52 + 110240 110807 . 1 568 0 -chrXV 110240 110807 HC_gene_7904_tx_18 1 + 110240 110807 . 2 382,73 0,495 -chrXV 110240 110808 HC_gene_7904_tx_19 24 + 110240 110808 . 1 569 0 -chrXV 110240 110809 HC_gene_7904_tx_20 112 + 110240 110809 . 1 570 0 -chrXV 110240 110810 HC_gene_7904_tx_21 56 + 110240 110810 . 1 571 0 -chrXV 110240 110811 HC_gene_7904_tx_22 26 + 110240 110811 . 1 572 0 -chrXV 110240 110812 HC_gene_7904_tx_23 89 + 110240 110812 . 1 573 0 -chrXV 110240 110813 HC_gene_7904_tx_24 45 + 110240 110813 . 1 574 0 -chrXV 110240 110813 HC_gene_7904_tx_25 1 + 110240 110813 . 2 434,46 0,528 -chrXV 110240 110814 HC_gene_7904_tx_26 19 + 110240 110814 . 1 575 0 -chrXV 110240 110815 HC_gene_7904_tx_27 73 + 110240 110815 . 1 576 0 -chrXV 110240 110815 HC_gene_7904_tx_28 1 + 110240 110815 . 2 61,435 0,141 -chrXV 110240 110816 HC_gene_7904_tx_29 43 + 110240 110816 . 1 577 0 -chrXV 110240 110816 HC_gene_7904_tx_30 1 + 110240 110816 . 2 483,45 0,532 -chrXV 110240 110817 HC_gene_7904_tx_31 7 + 110240 110817 . 1 578 0 -chrXV 110240 110818 HC_gene_7904_tx_32 53 + 110240 110818 . 1 579 0 -chrXV 110240 110819 HC_gene_7904_tx_33 17 + 110240 110819 . 1 580 0 -chrXV 110240 110820 HC_gene_7904_tx_34 28 + 110240 110820 . 1 581 0 -chrXV 110240 110821 HC_gene_7904_tx_35 2 + 110240 110821 . 1 582 0 -chrXV 110240 110822 HC_gene_7904_tx_36 2 + 110240 110822 . 1 583 0 -chrXV 110240 110823 HC_gene_7904_tx_37 27 + 110240 110823 . 1 584 0 -chrXV 110240 110824 HC_gene_7904_tx_38 2 + 110240 110824 . 1 585 0 -chrXV 110240 110825 HC_gene_7904_tx_39 2 + 110240 110825 . 1 586 0 -chrXV 110240 110826 HC_gene_7904_tx_40 22 + 110240 110826 . 1 587 0 -chrXV 110240 110827 HC_gene_7904_tx_41 2 + 110240 110827 . 1 588 0 -chrXV 110240 110827 HC_gene_7904_tx_42 1 + 110240 110827 . 2 414,36 0,552 -chrXV 110240 110828 HC_gene_7904_tx_43 2 + 110240 110828 . 1 589 0 -chrXV 110240 110829 HC_gene_7904_tx_44 19 + 110240 110829 . 1 590 0 -chrXV 110240 110829 HC_gene_7904_tx_45 1 + 110240 110829 . 2 440,38 0,552 -chrXV 110240 110830 HC_gene_7904_tx_46 2 + 110240 110830 . 1 591 0 -chrXV 110240 110832 HC_gene_7904_tx_47 3 + 110240 110832 . 1 593 0 -chrXV 110240 110835 HC_gene_7904_tx_48 5 + 110240 110835 . 1 596 0 -chrXV 110240 110835 HC_gene_7904_tx_49 1 + 110240 110835 . 2 434,68 0,528 -chrXV 110240 110838 HC_gene_7904_tx_50 3 + 110240 110838 . 1 599 0 -chrXV 110240 110841 HC_gene_7904_tx_51 2 + 110240 110841 . 1 602 0 -chrXV 110240 110842 HC_gene_7904_tx_52 8 + 110240 110842 . 1 603 0 -chrXV 110240 110842 HC_gene_7904_tx_53 1 + 110240 110842 . 2 373,175 0,428 -chrXV 110240 110843 HC_gene_7904_tx_54 2 + 110240 110843 . 1 604 0 -chrXV 110240 110844 HC_gene_7904_tx_55 1 + 110240 110844 . 1 605 0 -chrXV 110240 110846 HC_gene_7904_tx_56 1 + 110240 110846 . 1 607 0 -chrXV 110240 110849 HC_gene_7904_tx_57 1 + 110240 110849 . 1 610 0 -chrXV 110240 110852 HC_gene_7904_tx_58 3 + 110240 110852 . 1 613 0 -chrXV 110240 110853 HC_gene_7904_tx_59 1 + 110240 110853 . 1 614 0 -chrXV 110240 110854 HC_gene_7904_tx_60 5 + 110240 110854 . 1 615 0 -chrXV 110240 110856 HC_gene_7904_tx_61 1 + 110240 110856 . 1 617 0 -chrXV 110240 110857 HC_gene_7904_tx_62 2 + 110240 110857 . 1 618 0 -chrXV 110240 110858 HC_gene_7904_tx_63 1 + 110240 110858 . 1 619 0 -chrXV 110240 110859 HC_gene_7904_tx_64 1 + 110240 110859 . 1 620 0 -chrXV 110240 110860 HC_gene_7904_tx_65 1 + 110240 110860 . 1 621 0 -chrXV 110240 110861 HC_gene_7904_tx_66 1 + 110240 110861 . 1 622 0 -chrXV 110240 110863 HC_gene_7904_tx_67 3 + 110240 110863 . 1 624 0 -chrXV 110240 110864 HC_gene_7904_tx_68 1 + 110240 110864 . 1 625 0 -chrXV 110240 110867 HC_gene_7904_tx_69 1 + 110240 110867 . 1 628 0 -chrXV 110240 110870 HC_gene_7904_tx_70 1 + 110240 110870 . 1 631 0 -chrXV 110240 110876 HC_gene_7904_tx_71 1 + 110240 110876 . 1 637 0 -chrXV 111209 111891 HC_gene_8355_tx_1 88 - 111209 111891 . 1 683 0 -chrXV 111209 111891 HC_gene_8355_tx_2 1 - 111209 111891 . 2 216,344 0,339 -chrXV 112044 113210 HC_gene_7905_tx_1 12 + 112044 113210 . 1 1167 0 -chrXV 112044 113499 HC_gene_7905_tx_2 6 + 112044 113499 . 1 1456 0 -chrXV 112241 113210 HC_gene_7905_tx_3 2 + 112241 113210 . 1 970 0 -chrXV 114004 115259 HC_gene_8356_tx_1 1 - 114004 115259 . 1 1256 0 -chrXV 114004 115368 HC_gene_8356_tx_2 4 - 114004 115368 . 1 1365 0 -chrXV 114004 115368 HC_gene_8356_tx_3 1 - 114004 115368 . 2 1062,200 0,1165 -chrXV 114004 116085 HC_gene_8356_tx_4 12 - 114004 116085 . 1 2082 0 -chrXV 114004 116085 HC_gene_8356_tx_5 1 - 114004 116085 . 2 1053,953 0,1129 -chrXV 115108 115734 LC_gene_7906_tx_1 1 + 115108 115734 . 1 627 0 -chrXV 115699 116085 HC_gene_8356_tx_6 1 - 115699 116085 . 1 387 0 -chrXV 115931 117518 MC_gene_8357_tx_1 1 - 115931 117518 . 1 1588 0 -chrXV 115991 117976 MC_gene_8358_tx_1 1 - 115991 117976 . 1 1986 0 -chrXV 116382 116928 LC_gene_7907_tx_1 1 + 116382 116928 . 1 547 0 -chrXV 117690 118085 MC_gene_7908_tx_1 1 + 117690 118085 . 1 396 0 -chrXV 117985 123588 MC_gene_7909_tx_1 1 + 117985 123588 . 1 5604 0 -chrXV 120109 123607 MC_gene_7910_tx_1 1 + 120109 123607 . 1 3499 0 -chrXV 122867 123836 MC_gene_8359_tx_1 1 - 122867 123836 . 1 970 0 -chrXV 123830 125273 HC_gene_7911_tx_1 1 + 123830 125273 . 1 1444 0 -chrXV 123830 125995 HC_gene_7911_tx_2 24 + 123830 125995 . 1 2166 0 -chrXV 123830 125995 HC_gene_7911_tx_3 1 + 123830 125995 . 2 719,1369 0,797 -chrXV 124011 125995 HC_gene_7911_tx_4 3 + 124011 125995 . 1 1985 0 -chrXV 124122 125638 HC_gene_7911_tx_5 1 + 124122 125638 . 1 1517 0 -chrXV 124122 125995 HC_gene_7911_tx_6 6 + 124122 125995 . 1 1874 0 -chrXV 124122 125995 HC_gene_7911_tx_7 1 + 124122 125995 . 2 1002,808 0,1066 -chrXV 124484 125645 HC_gene_7911_tx_10 1 + 124484 125645 . 1 1162 0 -chrXV 124484 125995 HC_gene_7911_tx_8 5 + 124484 125995 . 1 1512 0 -chrXV 124638 125644 HC_gene_7911_tx_11 1 + 124638 125644 . 1 1007 0 -chrXV 124638 125995 HC_gene_7911_tx_9 7 + 124638 125995 . 1 1358 0 -chrXV 125399 125995 HC_gene_7911_tx_12 7 + 125399 125995 . 1 597 0 -chrXV 125505 125995 HC_gene_7911_tx_13 14 + 125505 125995 . 1 491 0 -chrXV 125714 125995 HC_gene_7911_tx_14 14 + 125714 125995 . 1 282 0 -chrXV 125769 125995 HC_gene_7911_tx_15 4 + 125769 125995 . 1 227 0 -chrXV 125887 126708 HC_gene_8360_tx_1 69 - 125887 126708 . 1 822 0 -chrXV 126906 127949 HC_gene_8361_tx_1 69 - 126906 127949 . 1 1044 0 -chrXV 126906 128318 HC_gene_8361_tx_2 2 - 126906 128318 . 1 1413 0 -chrXV 127438 127949 HC_gene_8361_tx_3 8 - 127438 127949 . 1 512 0 -chrXV 128069 128473 LC_gene_7912_tx_1 1 + 128069 128473 . 1 405 0 -chrXV 129018 132588 HC_gene_7913_tx_1 4 + 129018 132588 . 1 3571 0 -chrXV 130677 131618 LC_gene_8362_tx_1 1 - 130677 131618 . 1 942 0 -chrXV 131012 132588 HC_gene_7913_tx_2 1 + 131012 132588 . 1 1577 0 -chrXV 132461 133182 HC_gene_8363_tx_1 18 - 132461 133182 . 1 722 0 -chrXV 132461 135903 HC_gene_8363_tx_2 1 - 132461 135903 . 2 2923,234 0,3209 -chrXV 132461 135903 HC_gene_8363_tx_3 15 - 132461 135903 . 1 3443 0 -chrXV 132461 135903 HC_gene_8363_tx_4 1 - 132461 135903 . 2 78,3281 0,162 -chrXV 136033 136487 HC_gene_7914_tx_1 15 + 136033 136487 . 1 455 0 -chrXV 136417 136849 HC_gene_8364_tx_1 49 - 136417 136849 . 1 433 0 -chrXV 136417 137023 HC_gene_8364_tx_2 25 - 136417 137023 . 1 607 0 -chrXV 136417 137184 HC_gene_8364_tx_3 30 - 136417 137184 . 1 768 0 -chrXV 136417 137752 HC_gene_8364_tx_4 19 - 136417 137752 . 1 1336 0 -chrXV 136417 137851 HC_gene_8364_tx_5 164 - 136417 137851 . 1 1435 0 -chrXV 137355 138092 MC_gene_7915_tx_1 1 + 137355 138092 . 1 738 0 -chrXV 137988 138610 HC_gene_8365_tx_1 5 - 137988 138610 . 1 623 0 -chrXV 137988 138909 HC_gene_8365_tx_2 3 - 137988 138909 . 1 922 0 -chrXV 137988 139075 HC_gene_8365_tx_3 36 - 137988 139075 . 1 1088 0 -chrXV 139159 141381 HC_gene_8366_tx_1 4 - 139159 141381 . 1 2223 0 -chrXV 141353 142613 HC_gene_8367_tx_1 1 - 141353 142613 . 1 1261 0 -chrXV 141537 142613 HC_gene_8367_tx_2 37 - 141537 142613 . 1 1077 0 -chrXV 142599 143985 LC_gene_8368_tx_1 1 - 142599 143985 . 1 1387 0 -chrXV 142792 143795 HC_gene_7916_tx_1 69 + 142792 143795 . 1 1004 0 -chrXV 142792 143795 HC_gene_7916_tx_2 1 + 142792 143795 . 2 86,867 0,137 -chrXV 142792 143990 HC_gene_7916_tx_3 1 + 142792 143990 . 1 1199 0 -chrXV 142792 144090 HC_gene_7916_tx_4 1 + 142792 144090 . 1 1299 0 -chrXV 143032 143795 HC_gene_7916_tx_5 9 + 143032 143795 . 1 764 0 -chrXV 144162 145175 HC_gene_7917_tx_1 161 + 144162 145175 . 1 1014 0 -chrXV 144162 145175 HC_gene_7917_tx_2 1 + 144162 145175 . 2 91,870 0,144 -chrXV 144162 145175 HC_gene_7917_tx_3 1 + 144162 145175 . 2 113,792 0,222 -chrXV 144162 145288 HC_gene_7917_tx_4 10 + 144162 145288 . 1 1127 0 -chrXV 144338 145175 HC_gene_7917_tx_5 15 + 144338 145175 . 1 838 0 -chrXV 145075 146154 LC_gene_8369_tx_1 1 - 145075 146154 . 1 1080 0 -chrXV 147370 150306 HC_gene_7918_tx_1 1 + 147370 150306 . 1 2937 0 -chrXV 147370 150376 HC_gene_7918_tx_2 10 + 147370 150376 . 1 3007 0 -chrXV 150296 153524 HC_gene_8370_tx_1 6 - 150296 153524 . 1 3229 0 -chrXV 150296 153524 HC_gene_8370_tx_2 1 - 150296 153524 . 2 2148,964 0,2265 -chrXV 150927 151894 LC_gene_7919_tx_1 1 + 150927 151894 . 1 968 0 -chrXV 153364 153831 LC_gene_7920_tx_1 1 + 153364 153831 . 1 468 0 -chrXV 153560 154269 HC_gene_8371_tx_1 1 - 153560 154269 . 1 710 0 -chrXV 153712 154269 HC_gene_8371_tx_2 7 - 153712 154269 . 1 558 0 -chrXV 153712 154768 HC_gene_8371_tx_3 67 - 153712 154768 . 1 1057 0 -chrXV 153712 154768 HC_gene_8371_tx_4 1 - 153712 154768 . 2 796,127 0,930 -chrXV 154518 154768 HC_gene_8371_tx_5 1 - 154518 154768 . 1 251 0 -chrXV 154910 155128 MC_gene_7921_tx_1 1 + 154910 155128 . 1 219 0 -chrXV 154994 155568 HC_gene_8372_tx_1 8 - 154994 155568 . 1 575 0 -chrXV 154994 155893 HC_gene_8372_tx_2 1 - 154994 155893 . 1 900 0 -chrXV 154994 157025 HC_gene_8372_tx_3 1 - 154994 157025 . 1 2032 0 -chrXV 154994 158913 HC_gene_8372_tx_5 3 - 154994 158913 . 1 3920 0 -chrXV 155198 155568 HC_gene_8372_tx_6 3 - 155198 155568 . 1 371 0 -chrXV 155198 155893 HC_gene_8372_tx_8 3 - 155198 155893 . 1 696 0 -chrXV 155198 156569 HC_gene_8372_tx_10 2 - 155198 156569 . 1 1372 0 -chrXV 155198 158040 HC_gene_8372_tx_12 2 - 155198 158040 . 1 2843 0 -chrXV 155253 155568 HC_gene_8372_tx_7 5 - 155253 155568 . 1 316 0 -chrXV 155253 155893 HC_gene_8372_tx_9 4 - 155253 155893 . 1 641 0 -chrXV 155253 156569 HC_gene_8372_tx_11 1 - 155253 156569 . 1 1317 0 -chrXV 155253 157025 HC_gene_8372_tx_4 2 - 155253 157025 . 1 1773 0 -chrXV 155253 158040 HC_gene_8372_tx_13 1 - 155253 158040 . 1 2788 0 -chrXV 159116 159582 HC_gene_7922_tx_1 144 + 159116 159582 . 1 467 0 -chrXV 159455 160050 HC_gene_8373_tx_1 6151 - 159455 160050 . 1 596 0 -chrXV 159455 160633 HC_gene_8373_tx_2 11831 - 159455 160633 . 1 1179 0 -chrXV 161456 162424 MC_gene_7923_tx_1 1 + 161456 162424 . 1 969 0 -chrXV 163307 165479 MC_gene_7924_tx_1 1 + 163307 165479 . 1 2173 0 -chrXV 165615 167070 HC_gene_7925_tx_1 10 + 165615 167070 . 1 1456 0 -chrXV 167570 167860 HC_gene_8374_tx_1 4 - 167570 167860 . 1 291 0 -chrXV 167969 168893 LC_gene_8375_tx_1 1 - 167969 168893 . 1 925 0 -chrXV 168418 170081 HC_gene_7926_tx_1 5 + 168418 170081 . 1 1664 0 -chrXV 168667 170081 HC_gene_7926_tx_2 37 + 168667 170081 . 1 1415 0 -chrXV 168994 170081 HC_gene_7926_tx_3 2 + 168994 170081 . 1 1088 0 -chrXV 168994 170081 HC_gene_7926_tx_4 1 + 168994 170081 . 2 901,63 0,1025 -chrXV 169087 170081 HC_gene_7926_tx_5 6 + 169087 170081 . 1 995 0 -chrXV 169450 170001 MC_gene_8376_tx_1 1 - 169450 170001 . 1 552 0 -chrXV 169959 170937 MC_gene_8377_tx_1 1 - 169959 170937 . 1 979 0 -chrXV 170325 170604 LC_gene_7927_tx_1 1 + 170325 170604 . 1 280 0 -chrXV 173152 180391 HC_gene_7928_tx_1 1 + 173152 180391 . 2 2021,5166 0,2074 -chrXV 175421 175837 LC_gene_8378_tx_1 1 - 175421 175837 . 1 417 0 -chrXV 180281 181472 HC_gene_8379_tx_1 10 - 180281 181472 . 1 1192 0 -chrXV 180399 181472 HC_gene_8379_tx_2 58 - 180399 181472 . 1 1074 0 -chrXV 181667 184194 HC_gene_7929_tx_1 1 + 181667 184194 . 2 1286,1147 0,1381 -chrXV 181667 184254 HC_gene_7929_tx_2 1 + 181667 184254 . 1 2588 0 -chrXV 181667 185296 HC_gene_7929_tx_3 1 + 181667 185296 . 1 3630 0 -chrXV 185107 185534 LC_gene_8380_tx_1 1 - 185107 185534 . 1 428 0 -chrXV 185404 185781 HC_gene_7930_tx_1 672 + 185404 185781 . 1 378 0 -chrXV 185585 186157 HC_gene_8381_tx_1 1 - 185585 186157 . 1 573 0 -chrXV 185585 186732 HC_gene_8381_tx_3 1 - 185585 186732 . 1 1148 0 -chrXV 185656 186157 HC_gene_8381_tx_2 1 - 185656 186157 . 1 502 0 -chrXV 185656 186328 HC_gene_8381_tx_9 1 - 185656 186328 . 1 673 0 -chrXV 185656 186603 HC_gene_8381_tx_4 2 - 185656 186603 . 1 948 0 -chrXV 185656 186732 HC_gene_8381_tx_5 10 - 185656 186732 . 1 1077 0 -chrXV 185774 186157 HC_gene_8381_tx_11 19 - 185774 186157 . 1 384 0 -chrXV 185774 186328 HC_gene_8381_tx_10 41 - 185774 186328 . 1 555 0 -chrXV 185774 186603 HC_gene_8381_tx_6 38 - 185774 186603 . 1 830 0 -chrXV 185774 186732 HC_gene_8381_tx_7 193 - 185774 186732 . 1 959 0 -chrXV 185774 186732 HC_gene_8381_tx_8 1 - 185774 186732 . 2 731,127 0,832 -chrXV 187001 189533 HC_gene_7931_tx_1 5 + 187001 189533 . 1 2533 0 -chrXV 187001 189533 HC_gene_7931_tx_2 1 + 187001 189533 . 2 537,1771 0,762 -chrXV 187001 189678 HC_gene_7931_tx_3 1 + 187001 189678 . 1 2678 0 -chrXV 188381 189533 HC_gene_7931_tx_4 2 + 188381 189533 . 1 1153 0 -chrXV 188632 189533 HC_gene_7931_tx_5 5 + 188632 189533 . 1 902 0 -chrXV 189212 193348 HC_gene_8382_tx_1 1 - 189212 193348 . 1 4137 0 -chrXV 189212 193626 HC_gene_8382_tx_2 2 - 189212 193626 . 1 4415 0 -chrXV 189383 193348 HC_gene_8382_tx_3 1 - 189383 193348 . 1 3966 0 -chrXV 189383 193626 HC_gene_8382_tx_4 1 - 189383 193626 . 1 4244 0 -chrXV 189383 193626 HC_gene_8382_tx_5 1 - 189383 193626 . 2 2737,1400 0,2844 -chrXV 193216 193657 LC_gene_7932_tx_1 1 + 193216 193657 . 1 442 0 -chrXV 193779 194834 HC_gene_8383_tx_1 33 - 193779 194834 . 1 1056 0 -chrXV 194947 196419 HC_gene_7933_tx_1 13 + 194947 196419 . 1 1473 0 -chrXV 194947 196419 HC_gene_7933_tx_2 1 + 194947 196419 . 2 300,876 0,597 -chrXV 195221 196419 HC_gene_7933_tx_3 4 + 195221 196419 . 1 1199 0 -chrXV 196508 197107 HC_gene_7934_tx_1 105 + 196508 197107 . 1 600 0 -chrXV 196610 197107 HC_gene_7934_tx_2 15 + 196610 197107 . 1 498 0 -chrXV 196961 197826 HC_gene_8384_tx_1 6 - 196961 197826 . 1 866 0 -chrXV 196961 198080 HC_gene_8384_tx_2 2 - 196961 198080 . 1 1120 0 -chrXV 196961 198131 HC_gene_8384_tx_3 6 - 196961 198131 . 1 1171 0 -chrXV 196961 198448 HC_gene_8384_tx_4 2 - 196961 198448 . 1 1488 0 -chrXV 196961 198754 HC_gene_8384_tx_5 22 - 196961 198754 . 1 1794 0 -chrXV 196961 198754 HC_gene_8384_tx_6 1 - 196961 198754 . 2 1215,505 0,1289 -chrXV 198924 200317 HC_gene_7935_tx_1 11 + 198924 200317 . 1 1394 0 -chrXV 198924 200450 HC_gene_7935_tx_2 13 + 198924 200450 . 1 1527 0 -chrXV 198924 201098 HC_gene_7935_tx_5 1 + 198924 201098 . 1 2175 0 -chrXV 199043 200317 HC_gene_7935_tx_3 1 + 199043 200317 . 1 1275 0 -chrXV 199043 200450 HC_gene_7935_tx_4 2 + 199043 200450 . 1 1408 0 -chrXV 200113 200565 HC_gene_8385_tx_1 14 - 200113 200565 . 1 453 0 -chrXV 200113 200565 HC_gene_8385_tx_2 1 - 200113 200565 . 2 295,90 0,363 -chrXV 200113 201822 HC_gene_8385_tx_3 22 - 200113 201822 . 1 1710 0 -chrXV 200113 202271 HC_gene_8385_tx_5 2 - 200113 202271 . 1 2159 0 -chrXV 200113 202569 HC_gene_8385_tx_6 10 - 200113 202569 . 1 2457 0 -chrXV 200113 202569 HC_gene_8385_tx_7 1 - 200113 202569 . 3 214,654,1410 0,295,1047 -chrXV 200113 202569 HC_gene_8385_tx_8 1 - 200113 202569 . 2 893,702 0,1755 -chrXV 200215 200565 HC_gene_8385_tx_12 7 - 200215 200565 . 1 351 0 -chrXV 200215 201822 HC_gene_8385_tx_4 10 - 200215 201822 . 1 1608 0 -chrXV 200215 202569 HC_gene_8385_tx_9 3 - 200215 202569 . 1 2355 0 -chrXV 200215 202569 HC_gene_8385_tx_10 1 - 200215 202569 . 2 1574,220 0,2135 -chrXV 200381 202569 HC_gene_8385_tx_11 2 - 200381 202569 . 1 2189 0 -chrXV 202053 202714 MC_gene_7936_tx_1 1 + 202053 202714 . 1 662 0 -chrXV 202629 204101 HC_gene_8386_tx_1 5 - 202629 204101 . 1 1473 0 -chrXV 202629 204523 HC_gene_8386_tx_2 1 - 202629 204523 . 2 1167,661 0,1234 -chrXV 202629 204523 HC_gene_8386_tx_3 18 - 202629 204523 . 1 1895 0 -chrXV 202713 204568 LC_gene_7937_tx_1 1 + 202713 204568 . 1 1856 0 -chrXV 204661 205495 HC_gene_8387_tx_1 2 - 204661 205495 . 1 835 0 -chrXV 204661 205573 HC_gene_8387_tx_2 2 - 204661 205573 . 1 913 0 -chrXV 204661 205918 HC_gene_8387_tx_3 15 - 204661 205918 . 1 1258 0 -chrXV 204685 205162 LC_gene_7938_tx_1 1 + 204685 205162 . 1 478 0 -chrXV 206002 206569 HC_gene_8388_tx_1 28 - 206002 206569 . 1 568 0 -chrXV 206002 206698 HC_gene_8388_tx_2 18 - 206002 206698 . 1 697 0 -chrXV 206002 207198 HC_gene_8388_tx_3 134 - 206002 207198 . 1 1197 0 -chrXV 206002 207198 HC_gene_8388_tx_4 1 - 206002 207198 . 2 99,364 0,833 -chrXV 206002 207198 HC_gene_8388_tx_5 1 - 206002 207198 . 2 602,382 0,815 -chrXV 206121 206371 LC_gene_7939_tx_1 1 + 206121 206371 . 1 251 0 -chrXV 206947 207517 LC_gene_7940_tx_1 1 + 206947 207517 . 1 571 0 -chrXV 207339 210339 HC_gene_8389_tx_1 4 - 207339 210339 . 1 3001 0 -chrXV 208231 209457 LC_gene_7941_tx_1 1 + 208231 209457 . 1 1227 0 -chrXV 210440 211385 HC_gene_8390_tx_1 13 - 210440 211385 . 1 946 0 -chrXV 210440 211695 HC_gene_8390_tx_2 6 - 210440 211695 . 1 1256 0 -chrXV 210440 211752 HC_gene_8390_tx_3 6 - 210440 211752 . 1 1313 0 -chrXV 210440 212006 HC_gene_8390_tx_4 79 - 210440 212006 . 1 1567 0 -chrXV 210440 212006 HC_gene_8390_tx_5 1 - 210440 212006 . 2 1263,212 0,1355 -chrXV 210440 212006 HC_gene_8390_tx_6 1 - 210440 212006 . 2 647,865 0,702 -chrXV 212210 213899 HC_gene_7942_tx_1 112 + 212210 213899 . 1 1690 0 -chrXV 212210 213899 HC_gene_7942_tx_2 1 + 212210 213899 . 2 881,765 0,925 -chrXV 212210 213899 HC_gene_7942_tx_3 1 + 212210 213899 . 2 745,608 0,1082 -chrXV 212210 213899 HC_gene_7942_tx_4 1 + 212210 213899 . 2 994,640 0,1050 -chrXV 212502 213899 HC_gene_7942_tx_5 19 + 212502 213899 . 1 1398 0 -chrXV 213443 213899 HC_gene_7942_tx_6 30 + 213443 213899 . 1 457 0 -chrXV 213732 214450 HC_gene_8391_tx_1 9 - 213732 214450 . 1 719 0 -chrXV 213732 215228 HC_gene_8391_tx_2 3 - 213732 215228 . 1 1497 0 -chrXV 213732 216204 HC_gene_8391_tx_3 14 - 213732 216204 . 1 2473 0 -chrXV 213732 216204 HC_gene_8391_tx_4 1 - 213732 216204 . 2 780,1278 0,1195 -chrXV 213732 216204 HC_gene_8391_tx_5 1 - 213732 216204 . 2 971,1394 0,1079 -chrXV 213732 216982 HC_gene_8391_tx_6 1 - 213732 216982 . 1 3251 0 -chrXV 216624 217152 MC_gene_7943_tx_1 1 + 216624 217152 . 1 529 0 -chrXV 217018 218457 LC_gene_8392_tx_1 1 - 217018 218457 . 1 1440 0 -chrXV 217157 218696 HC_gene_7944_tx_1 96 + 217157 218696 . 1 1540 0 -chrXV 217157 218696 HC_gene_7944_tx_2 1 + 217157 218696 . 2 1315,74 0,1466 -chrXV 217157 218696 HC_gene_7944_tx_3 1 + 217157 218696 . 2 133,967 0,573 -chrXV 217259 218696 HC_gene_7944_tx_4 16 + 217259 218696 . 1 1438 0 -chrXV 217408 218696 HC_gene_7944_tx_5 12 + 217408 218696 . 1 1289 0 -chrXV 217408 218696 HC_gene_7944_tx_6 1 + 217408 218696 . 2 61,817 0,472 -chrXV 217486 218696 HC_gene_7944_tx_7 4 + 217486 218696 . 1 1211 0 -chrXV 218053 218696 HC_gene_7944_tx_8 19 + 218053 218696 . 1 644 0 -chrXV 218197 218696 HC_gene_7944_tx_9 14 + 218197 218696 . 1 500 0 -chrXV 218507 218687 MC_gene_8393_tx_1 1 - 218507 218687 . 1 181 0 -chrXV 219138 220616 HC_gene_7945_tx_1 920 + 219138 220616 . 1 1479 0 -chrXV 219138 220616 HC_gene_7945_tx_2 1 + 219138 220616 . 2 811,617 0,862 -chrXV 219138 220616 HC_gene_7945_tx_3 1 + 219138 220616 . 2 1371,48 0,1431 -chrXV 219138 220616 HC_gene_7945_tx_4 1 + 219138 220616 . 2 228,979 0,500 -chrXV 219138 220616 HC_gene_7945_tx_5 1 + 219138 220616 . 2 77,1322 0,157 -chrXV 219138 220616 HC_gene_7945_tx_6 1 + 219138 220616 . 2 386,1053 0,426 -chrXV 219138 220616 HC_gene_7945_tx_7 1 + 219138 220616 . 2 75,1333 0,146 -chrXV 219138 220616 HC_gene_7945_tx_8 1 + 219138 220616 . 2 1377,54 0,1425 -chrXV 219138 220616 HC_gene_7945_tx_9 1 + 219138 220616 . 2 805,603 0,876 -chrXV 219138 220616 HC_gene_7945_tx_10 1 + 219138 220616 . 2 1359,54 0,1425 -chrXV 219138 220616 HC_gene_7945_tx_11 1 + 219138 220616 . 2 677,134 0,1345 -chrXV 219138 220616 HC_gene_7945_tx_12 1 + 219138 220616 . 2 265,814 0,665 -chrXV 219138 220616 HC_gene_7945_tx_13 1 + 219138 220616 . 2 842,490 0,989 -chrXV 219138 220616 HC_gene_7945_tx_14 1 + 219138 220616 . 2 794,589 0,890 -chrXV 219138 220616 HC_gene_7945_tx_15 1 + 219138 220616 . 2 811,578 0,901 -chrXV 219138 220616 HC_gene_7945_tx_16 1 + 219138 220616 . 2 829,589 0,890 -chrXV 219138 220616 HC_gene_7945_tx_17 1 + 219138 220616 . 2 886,545 0,934 -chrXV 219138 220616 HC_gene_7945_tx_18 1 + 219138 220616 . 2 811,625 0,854 -chrXV 219138 220616 HC_gene_7945_tx_19 1 + 219138 220616 . 2 829,603 0,876 -chrXV 219138 220616 HC_gene_7945_tx_20 1 + 219138 220616 . 2 959,451 0,1028 -chrXV 219140 220177 HC_gene_8394_tx_1 1 - 219140 220177 . 1 1038 0 -chrXV 219140 220559 HC_gene_8394_tx_2 5 - 219140 220559 . 1 1420 0 -chrXV 220739 223050 HC_gene_7946_tx_1 25 + 220739 223050 . 1 2312 0 -chrXV 221273 223050 HC_gene_7946_tx_2 6 + 221273 223050 . 1 1778 0 -chrXV 222490 223050 HC_gene_7946_tx_3 14 + 222490 223050 . 1 561 0 -chrXV 223188 224216 HC_gene_7947_tx_1 2 + 223188 224216 . 1 1029 0 -chrXV 223188 224353 HC_gene_7947_tx_2 46 + 223188 224353 . 1 1166 0 -chrXV 223494 224353 HC_gene_7947_tx_3 3 + 223494 224353 . 1 860 0 -chrXV 224321 225626 HC_gene_8395_tx_1 7 - 224321 225626 . 1 1306 0 -chrXV 224321 226123 HC_gene_8395_tx_2 4 - 224321 226123 . 1 1803 0 -chrXV 225676 226565 MC_gene_7948_tx_1 1 + 225676 226565 . 1 890 0 -chrXV 226078 226478 HC_gene_8396_tx_1 1 - 226078 226478 . 1 401 0 -chrXV 226078 226490 HC_gene_8396_tx_2 3 - 226078 226490 . 1 413 0 -chrXV 226810 227491 MC_gene_7949_tx_1 1 + 226810 227491 . 1 682 0 -chrXV 227093 227628 LC_gene_8397_tx_1 1 - 227093 227628 . 1 536 0 -chrXV 227659 228267 MC_gene_7950_tx_1 1 + 227659 228267 . 1 609 0 -chrXV 227870 228406 LC_gene_8398_tx_1 1 - 227870 228406 . 1 537 0 -chrXV 228534 229914 HC_gene_7951_tx_1 1 + 228534 229914 . 2 32,875 0,506 -chrXV 228565 229914 HC_gene_7951_tx_2 39 + 228565 229914 . 1 1350 0 -chrXV 228565 229914 HC_gene_7951_tx_3 1 + 228565 229914 . 2 258,1021 0,329 -chrXV 228565 229914 HC_gene_7951_tx_4 1 + 228565 229914 . 2 439,814 0,536 -chrXV 228565 229914 HC_gene_7951_tx_5 1 + 228565 229914 . 2 208,1071 0,279 -chrXV 228565 229914 HC_gene_7951_tx_6 1 + 228565 229914 . 2 587,690 0,660 -chrXV 228565 229914 HC_gene_7951_tx_7 1 + 228565 229914 . 2 485,729 0,621 -chrXV 229106 229914 HC_gene_7951_tx_8 3 + 229106 229914 . 1 809 0 -chrXV 229193 229914 HC_gene_7951_tx_9 8 + 229193 229914 . 1 722 0 -chrXV 230075 231321 HC_gene_7952_tx_1 1 + 230075 231321 . 1 1247 0 -chrXV 230168 231321 HC_gene_7952_tx_2 17 + 230168 231321 . 1 1154 0 -chrXV 230168 231428 HC_gene_7952_tx_3 12 + 230168 231428 . 1 1261 0 -chrXV 230168 231428 HC_gene_7952_tx_4 1 + 230168 231428 . 2 883,279 0,982 -chrXV 230402 231321 HC_gene_7952_tx_5 1 + 230402 231321 . 1 920 0 -chrXV 230402 231428 HC_gene_7952_tx_6 3 + 230402 231428 . 1 1027 0 -chrXV 230739 231321 HC_gene_7952_tx_7 3 + 230739 231321 . 1 583 0 -chrXV 230739 231428 HC_gene_7952_tx_8 2 + 230739 231428 . 1 690 0 -chrXV 231287 231590 HC_gene_8399_tx_1 20 - 231287 231590 . 1 304 0 -chrXV 231287 231669 HC_gene_8399_tx_2 12 - 231287 231669 . 1 383 0 -chrXV 231287 231789 HC_gene_8399_tx_3 225 - 231287 231789 . 1 503 0 -chrXV 231287 231925 HC_gene_8399_tx_4 4 - 231287 231925 . 1 639 0 -chrXV 231849 233651 HC_gene_8400_tx_1 2 - 231849 233651 . 1 1803 0 -chrXV 232315 233243 HC_gene_8400_tx_2 8 - 232315 233243 . 1 929 0 -chrXV 232315 233563 HC_gene_8400_tx_3 5 - 232315 233563 . 1 1249 0 -chrXV 232315 233651 HC_gene_8400_tx_4 55 - 232315 233651 . 1 1337 0 -chrXV 232396 233843 HC_gene_7953_tx_1 1 + 232396 233843 . 1 1448 0 -chrXV 233747 234114 MC_gene_8401_tx_1 1 - 233747 234114 . 1 368 0 -chrXV 234276 234633 MC_gene_7954_tx_1 1 + 234276 234633 . 1 358 0 -chrXV 234749 234917 HC_gene_7955_tx_1 1 + 234749 234917 . 1 169 0 -chrXV 234763 237591 LC_gene_8402_tx_1 1 - 234763 237591 . 1 2829 0 -chrXV 236719 238410 HC_gene_7956_tx_1 7 + 236719 238410 . 1 1692 0 -chrXV 236855 238410 HC_gene_7956_tx_2 4 + 236855 238410 . 1 1556 0 -chrXV 238067 238410 HC_gene_7956_tx_3 10 + 238067 238410 . 1 344 0 -chrXV 238128 238410 HC_gene_7956_tx_4 3 + 238128 238410 . 1 283 0 -chrXV 238573 240206 HC_gene_7957_tx_1 92 + 238573 240206 . 1 1634 0 -chrXV 238573 240206 HC_gene_7957_tx_2 1 + 238573 240206 . 2 1100,438 0,1196 -chrXV 238573 240206 HC_gene_7957_tx_3 1 + 238573 240206 . 2 692,836 0,798 -chrXV 239093 240206 HC_gene_7957_tx_4 9 + 239093 240206 . 1 1114 0 -chrXV 239461 240206 HC_gene_7957_tx_5 16 + 239461 240206 . 1 746 0 -chrXV 239461 240206 HC_gene_7957_tx_6 1 + 239461 240206 . 2 257,418 0,328 -chrXV 239619 240206 HC_gene_7957_tx_7 14 + 239619 240206 . 1 588 0 -chrXV 240062 240644 HC_gene_8403_tx_1 1 - 240062 240644 . 1 583 0 -chrXV 240062 240995 HC_gene_8403_tx_3 1 - 240062 240995 . 1 934 0 -chrXV 240062 241111 HC_gene_8403_tx_4 1 - 240062 241111 . 2 886,86 0,964 -chrXV 240062 241359 HC_gene_8403_tx_5 3 - 240062 241359 . 2 886,334 0,964 -chrXV 240130 240644 HC_gene_8403_tx_2 1 - 240130 240644 . 1 515 0 -chrXV 240130 240798 HC_gene_8403_tx_14 2 - 240130 240798 . 1 669 0 -chrXV 240130 240995 HC_gene_8403_tx_6 4 - 240130 240995 . 1 866 0 -chrXV 240130 241111 HC_gene_8403_tx_7 10 - 240130 241111 . 2 818,86 0,896 -chrXV 240130 241111 HC_gene_8403_tx_8 1 - 240130 241111 . 1 982 0 -chrXV 240130 241111 HC_gene_8403_tx_9 1 - 240130 241111 . 2 818,90 0,892 -chrXV 240130 241359 HC_gene_8403_tx_10 31 - 240130 241359 . 2 818,334 0,896 -chrXV 240130 241359 HC_gene_8403_tx_11 1 - 240130 241359 . 2 818,187 0,1043 -chrXV 240130 241359 HC_gene_8403_tx_12 1 - 240130 241359 . 1 1230 0 -chrXV 240130 241359 HC_gene_8403_tx_13 1 - 240130 241359 . 2 818,182 0,1048 -chrXV 241508 242756 MC_gene_8404_tx_1 1 - 241508 242756 . 1 1249 0 -chrXV 241705 242856 HC_gene_7958_tx_1 2 + 241705 242856 . 1 1152 0 -chrXV 243053 246932 HC_gene_7959_tx_1 5 + 243053 246932 . 1 3880 0 -chrXV 243053 246932 HC_gene_7959_tx_2 1 + 243053 246932 . 2 2696,1080 0,2800 -chrXV 243201 246932 HC_gene_7959_tx_3 1 + 243201 246932 . 1 3732 0 -chrXV 243434 246932 HC_gene_7959_tx_4 3 + 243434 246932 . 1 3499 0 -chrXV 245600 246932 HC_gene_7959_tx_5 2 + 245600 246932 . 1 1333 0 -chrXV 247099 248366 HC_gene_7960_tx_1 17 + 247099 248366 . 1 1268 0 -chrXV 247099 248366 HC_gene_7960_tx_2 1 + 247099 248366 . 2 774,424 0,844 -chrXV 247468 247855 LC_gene_8405_tx_1 1 - 247468 247855 . 1 388 0 -chrXV 248285 249618 HC_gene_8406_tx_1 28 - 248285 249618 . 1 1334 0 -chrXV 248285 249618 HC_gene_8406_tx_2 1 - 248285 249618 . 2 523,742 0,592 -chrXV 249765 251131 HC_gene_7961_tx_1 17 + 249765 251131 . 1 1367 0 -chrXV 250171 250579 MC_gene_8407_tx_1 1 - 250171 250579 . 1 409 0 -chrXV 251107 251685 HC_gene_8408_tx_1 22 - 251107 251685 . 1 579 0 -chrXV 251107 252366 HC_gene_8408_tx_2 11 - 251107 252366 . 1 1260 0 -chrXV 251107 252494 HC_gene_8408_tx_3 1 - 251107 252494 . 1 1388 0 -chrXV 251107 252694 HC_gene_8408_tx_4 50 - 251107 252694 . 1 1588 0 -chrXV 251107 252694 HC_gene_8408_tx_5 1 - 251107 252694 . 2 64,890 0,698 -chrXV 251107 252694 HC_gene_8408_tx_6 1 - 251107 252694 . 2 555,952 0,636 -chrXV 251107 252694 HC_gene_8408_tx_7 1 - 251107 252694 . 2 619,919 0,669 -chrXV 251107 252694 HC_gene_8408_tx_8 1 - 251107 252694 . 2 617,568 0,1020 -chrXV 252983 253279 LC_gene_7962_tx_1 1 + 252983 253279 . 1 297 0 -chrXV 253024 253283 HC_gene_8409_tx_1 248 - 253024 253283 . 1 260 0 -chrXV 253024 253522 HC_gene_8409_tx_2 281 - 253024 253522 . 1 499 0 -chrXV 253024 253615 HC_gene_8409_tx_3 5200 - 253024 253615 . 1 592 0 -chrXV 254268 254804 HC_gene_7963_tx_1 4384 + 254268 254804 . 1 537 0 -chrXV 254707 255086 HC_gene_8410_tx_1 1 - 254707 255086 . 1 380 0 -chrXV 254731 255086 HC_gene_8410_tx_2 2 - 254731 255086 . 1 356 0 -chrXV 254734 255086 HC_gene_8410_tx_3 1 - 254734 255086 . 1 353 0 -chrXV 254735 255086 HC_gene_8410_tx_4 5 - 254735 255086 . 1 352 0 -chrXV 254736 255086 HC_gene_8410_tx_5 7 - 254736 255086 . 1 351 0 -chrXV 254737 255086 HC_gene_8410_tx_6 2 - 254737 255086 . 1 350 0 -chrXV 254743 255086 HC_gene_8410_tx_7 12 - 254743 255086 . 1 344 0 -chrXV 255305 256249 HC_gene_7964_tx_1 180 + 255305 256249 . 1 945 0 -chrXV 255423 256249 HC_gene_7964_tx_2 17 + 255423 256249 . 1 827 0 -chrXV 255846 256249 HC_gene_7964_tx_3 55 + 255846 256249 . 1 404 0 -chrXV 255938 256249 HC_gene_7964_tx_4 23 + 255938 256249 . 1 312 0 -chrXV 256077 256583 LC_gene_8411_tx_1 1 - 256077 256583 . 1 507 0 -chrXV 256351 256648 HC_gene_7965_tx_1 5 + 256351 256648 . 1 298 0 -chrXV 256351 256750 HC_gene_7965_tx_2 1 + 256351 256750 . 1 400 0 -chrXV 257541 259181 HC_gene_7966_tx_1 3 + 257541 259181 . 1 1641 0 -chrXV 257982 259181 HC_gene_7966_tx_2 4 + 257982 259181 . 1 1200 0 -chrXV 258448 259181 HC_gene_7966_tx_3 5 + 258448 259181 . 1 734 0 -chrXV 258737 259181 HC_gene_7966_tx_4 20 + 258737 259181 . 1 445 0 -chrXV 259016 259645 MC_gene_8412_tx_1 1 - 259016 259645 . 1 630 0 -chrXV 259344 259689 HC_gene_7967_tx_1 6 + 259344 259689 . 1 346 0 -chrXV 259402 259689 HC_gene_7967_tx_2 8 + 259402 259689 . 1 288 0 -chrXV 259895 263302 HC_gene_7968_tx_1 2 + 259895 263302 . 1 3408 0 -chrXV 260704 263302 HC_gene_7968_tx_2 1 + 260704 263302 . 1 2599 0 -chrXV 263416 265255 HC_gene_7969_tx_1 17 + 263416 265255 . 1 1840 0 -chrXV 263766 264347 LC_gene_8413_tx_1 1 - 263766 264347 . 1 582 0 -chrXV 265365 266214 HC_gene_7970_tx_1 16 + 265365 266214 . 1 850 0 -chrXV 265365 266273 HC_gene_7970_tx_2 11 + 265365 266273 . 1 909 0 -chrXV 265768 266214 HC_gene_7970_tx_3 2 + 265768 266214 . 1 447 0 -chrXV 265768 266273 HC_gene_7970_tx_4 1 + 265768 266273 . 1 506 0 -chrXV 266121 267432 HC_gene_8414_tx_1 2 - 266121 267432 . 1 1312 0 -chrXV 266121 267582 HC_gene_8414_tx_2 17 - 266121 267582 . 1 1462 0 -chrXV 266121 267582 HC_gene_8414_tx_3 1 - 266121 267582 . 2 804,513 0,949 -chrXV 266732 267427 MC_gene_7971_tx_1 1 + 266732 267427 . 1 696 0 -chrXV 267778 267924 MC_gene_8415_tx_1 1 - 267778 267924 . 1 147 0 -chrXV 267827 268208 HC_gene_7972_tx_1 2 + 267827 268208 . 1 382 0 -chrXV 267913 269837 HC_gene_7973_tx_1 1 + 267913 269837 . 1 1925 0 -chrXV 268136 269837 HC_gene_7973_tx_2 135 + 268136 269837 . 1 1702 0 -chrXV 268136 269837 HC_gene_7973_tx_3 1 + 268136 269837 . 2 119,986 0,716 -chrXV 268136 269837 HC_gene_7973_tx_4 1 + 268136 269837 . 2 1159,299 0,1403 -chrXV 268136 269837 HC_gene_7973_tx_5 1 + 268136 269837 . 2 661,979 0,723 -chrXV 268142 269837 HC_gene_7973_tx_6 1 + 268142 269837 . 2 1183,329 0,1367 -chrXV 268176 269837 HC_gene_7973_tx_7 1 + 268176 269837 . 2 886,491 0,1171 -chrXV 268432 269837 HC_gene_7973_tx_8 21 + 268432 269837 . 1 1406 0 -chrXV 268432 269837 HC_gene_7973_tx_9 1 + 268432 269837 . 2 845,491 0,915 -chrXV 269061 269837 HC_gene_7973_tx_10 41 + 269061 269837 . 1 777 0 -chrXV 269061 269837 HC_gene_7973_tx_11 1 + 269061 269837 . 2 162,491 0,286 -chrXV 269317 269837 HC_gene_7973_tx_12 26 + 269317 269837 . 1 521 0 -chrXV 269716 271588 HC_gene_8416_tx_1 12 - 269716 271588 . 1 1873 0 -chrXV 269716 271588 HC_gene_8416_tx_2 1 - 269716 271588 . 2 835,964 0,909 -chrXV 270886 271875 LC_gene_7974_tx_1 1 + 270886 271875 . 1 990 0 -chrXV 271805 272333 HC_gene_8417_tx_1 18 - 271805 272333 . 1 529 0 -chrXV 271805 272398 HC_gene_8417_tx_2 7 - 271805 272398 . 1 594 0 -chrXV 271805 272398 HC_gene_8417_tx_3 1 - 271805 272398 . 2 439,49 0,545 -chrXV 271805 272531 HC_gene_8417_tx_4 8 - 271805 272531 . 1 727 0 -chrXV 271805 272617 HC_gene_8417_tx_5 19 - 271805 272617 . 1 813 0 -chrXV 271805 272740 HC_gene_8417_tx_6 6 - 271805 272740 . 1 936 0 -chrXV 271805 273728 HC_gene_8417_tx_7 28 - 271805 273728 . 1 1924 0 -chrXV 271805 273728 HC_gene_8417_tx_8 1 - 271805 273728 . 2 962,841 0,1083 -chrXV 273919 274330 HC_gene_8418_tx_1 1 - 273919 274330 . 1 412 0 -chrXV 273919 274332 HC_gene_8418_tx_2 1 - 273919 274332 . 1 414 0 -chrXV 273919 274341 HC_gene_8418_tx_3 1 - 273919 274341 . 1 423 0 -chrXV 273919 274346 HC_gene_8418_tx_4 1 - 273919 274346 . 1 428 0 -chrXV 273919 274356 HC_gene_8418_tx_5 1 - 273919 274356 . 1 438 0 -chrXV 273919 274365 HC_gene_8418_tx_6 177 - 273919 274365 . 1 447 0 -chrXV 273919 274365 HC_gene_8418_tx_7 1 - 273919 274365 . 2 253,97 0,350 -chrXV 273919 274365 HC_gene_8418_tx_8 1 - 273919 274365 . 2 242,42 0,405 -chrXV 273919 274370 HC_gene_8418_tx_9 1 - 273919 274370 . 1 452 0 -chrXV 274894 276979 HC_gene_7975_tx_1 11 + 274894 276979 . 1 2086 0 -chrXV 277264 277652 MC_gene_7976_tx_1 1 + 277264 277652 . 1 389 0 -chrXV 277744 278149 LC_gene_8419_tx_1 1 - 277744 278149 . 1 406 0 -chrXV 278055 280274 HC_gene_7977_tx_1 1 + 278055 280274 . 2 1194,800 0,1420 -chrXV 278055 280274 HC_gene_7977_tx_2 8 + 278055 280274 . 1 2220 0 -chrXV 278412 280274 HC_gene_7977_tx_3 2 + 278412 280274 . 1 1863 0 -chrXV 280167 280851 HC_gene_8420_tx_1 27 - 280167 280851 . 1 685 0 -chrXV 280167 280958 HC_gene_8420_tx_2 7 - 280167 280958 . 1 792 0 -chrXV 280167 281126 HC_gene_8420_tx_3 6 - 280167 281126 . 1 960 0 -chrXV 280167 281529 HC_gene_8420_tx_4 71 - 280167 281529 . 1 1363 0 -chrXV 280167 281529 HC_gene_8420_tx_5 1 - 280167 281529 . 2 355,947 0,416 -chrXV 280167 281529 HC_gene_8420_tx_6 1 - 280167 281529 . 2 830,430 0,933 -chrXV 280167 281529 HC_gene_8420_tx_7 1 - 280167 281529 . 2 285,997 0,366 -chrXV 281661 281970 HC_gene_7978_tx_1 2 + 281661 281970 . 1 310 0 -chrXV 281661 282049 HC_gene_7978_tx_2 7 + 281661 282049 . 1 389 0 -chrXV 281661 282328 HC_gene_7978_tx_3 1 + 281661 282328 . 1 668 0 -chrXV 282302 283326 HC_gene_8421_tx_1 6 - 282302 283326 . 1 1025 0 -chrXV 282302 285480 HC_gene_8421_tx_2 22 - 282302 285480 . 1 3179 0 -chrXV 282302 285480 HC_gene_8421_tx_3 1 - 282302 285480 . 2 1867,1272 0,1907 -chrXV 282302 285480 HC_gene_8421_tx_4 1 - 282302 285480 . 2 1867,1250 0,1929 -chrXV 282302 285480 HC_gene_8421_tx_5 1 - 282302 285480 . 2 1421,1713 0,1466 -chrXV 285607 286070 LC_gene_8422_tx_1 1 - 285607 286070 . 1 464 0 -chrXV 286046 288045 HC_gene_7979_tx_1 52 + 286046 288045 . 1 2000 0 -chrXV 286046 288045 HC_gene_7979_tx_2 1 + 286046 288045 . 2 834,915 0,1085 -chrXV 286219 288045 HC_gene_7979_tx_3 7 + 286219 288045 . 1 1827 0 -chrXV 286219 288045 HC_gene_7979_tx_4 1 + 286219 288045 . 2 592,1180 0,647 -chrXV 287355 288045 HC_gene_7979_tx_5 23 + 287355 288045 . 1 691 0 -chrXV 288755 290777 HC_gene_7980_tx_1 13 + 288755 290777 . 1 2023 0 -chrXV 288755 290777 HC_gene_7980_tx_2 1 + 288755 290777 . 3 622,806,337 0,757,1686 -chrXV 290209 290662 HC_gene_7980_tx_3 2 + 290209 290662 . 1 454 0 -chrXV 290209 290777 HC_gene_7980_tx_4 10 + 290209 290777 . 1 569 0 -chrXV 290695 291296 HC_gene_8423_tx_1 10 - 290695 291296 . 1 602 0 -chrXV 290695 291413 HC_gene_8423_tx_2 10 - 290695 291413 . 1 719 0 -chrXV 290695 291636 HC_gene_8423_tx_3 5 - 290695 291636 . 1 942 0 -chrXV 290695 291812 HC_gene_8423_tx_4 8 - 290695 291812 . 1 1118 0 -chrXV 290695 292123 HC_gene_8423_tx_5 39 - 290695 292123 . 1 1429 0 -chrXV 290695 292123 HC_gene_8423_tx_6 1 - 290695 292123 . 2 1194,161 0,1268 -chrXV 290695 292123 HC_gene_8423_tx_7 1 - 290695 292123 . 2 1134,132 0,1297 -chrXV 291533 291812 HC_gene_8423_tx_8 1 - 291533 291812 . 1 280 0 -chrXV 292441 294788 HC_gene_7981_tx_1 6 + 292441 294788 . 1 2348 0 -chrXV 292587 294150 LC_gene_8424_tx_1 1 - 292587 294150 . 1 1564 0 -chrXV 294707 294946 HC_gene_8425_tx_1 10 - 294707 294946 . 1 240 0 -chrXV 294707 295051 HC_gene_8425_tx_2 30 - 294707 295051 . 1 345 0 -chrXV 294707 295051 HC_gene_8425_tx_3 1 - 294707 295051 . 2 230,62 0,283 -chrXV 294707 295511 HC_gene_8425_tx_4 7 - 294707 295511 . 1 805 0 -chrXV 294707 295610 HC_gene_8425_tx_5 5 - 294707 295610 . 1 904 0 -chrXV 294707 295766 HC_gene_8425_tx_6 7 - 294707 295766 . 1 1060 0 -chrXV 294707 295867 HC_gene_8425_tx_7 2 - 294707 295867 . 1 1161 0 -chrXV 294707 295989 HC_gene_8425_tx_8 3 - 294707 295989 . 1 1283 0 -chrXV 294707 296143 HC_gene_8425_tx_9 43 - 294707 296143 . 1 1437 0 -chrXV 294707 296143 HC_gene_8425_tx_10 1 - 294707 296143 . 2 590,782 0,655 -chrXV 294707 296143 HC_gene_8425_tx_11 1 - 294707 296143 . 2 211,1078 0,359 -chrXV 296389 296758 MC_gene_8426_tx_1 1 - 296389 296758 . 1 370 0 -chrXV 296411 298918 HC_gene_7982_tx_1 1 + 296411 298918 . 1 2508 0 -chrXV 297749 299145 LC_gene_8427_tx_1 1 - 297749 299145 . 1 1397 0 -chrXV 299407 300231 MC_gene_8428_tx_1 1 - 299407 300231 . 1 825 0 -chrXV 299537 300191 HC_gene_7983_tx_1 25 + 299537 300191 . 1 655 0 -chrXV 299537 300308 HC_gene_7983_tx_2 31 + 299537 300308 . 1 772 0 -chrXV 299628 300191 HC_gene_7983_tx_3 1 + 299628 300191 . 1 564 0 -chrXV 299727 300191 HC_gene_7983_tx_4 5 + 299727 300191 . 1 465 0 -chrXV 299727 300308 HC_gene_7983_tx_5 8 + 299727 300308 . 1 582 0 -chrXV 300149 300461 MC_gene_8429_tx_1 1 - 300149 300461 . 1 313 0 -chrXV 301099 301325 MC_gene_7984_tx_1 1 + 301099 301325 . 1 227 0 -chrXV 301260 303194 HC_gene_8430_tx_1 15 - 301260 303194 . 1 1935 0 -chrXV 303417 303662 HC_gene_8431_tx_1 4 - 303417 303662 . 1 246 0 -chrXV 303417 303726 HC_gene_8431_tx_2 29 - 303417 303726 . 1 310 0 -chrXV 303417 303961 HC_gene_8431_tx_3 24 - 303417 303961 . 1 545 0 -chrXV 303417 304068 HC_gene_8431_tx_4 213 - 303417 304068 . 1 652 0 -chrXV 303417 304361 HC_gene_8431_tx_5 10 - 303417 304361 . 1 945 0 -chrXV 303418 305284 HC_gene_7985_tx_1 2 + 303418 305284 . 1 1867 0 -chrXV 303418 305422 HC_gene_7985_tx_2 2 + 303418 305422 . 1 2005 0 -chrXV 303418 305586 HC_gene_7985_tx_3 1 + 303418 305586 . 1 2169 0 -chrXV 304601 305284 HC_gene_7985_tx_4 4 + 304601 305284 . 1 684 0 -chrXV 304601 305422 HC_gene_7985_tx_5 4 + 304601 305422 . 1 822 0 -chrXV 304601 305586 HC_gene_7985_tx_6 1 + 304601 305586 . 1 986 0 -chrXV 304601 307688 HC_gene_7985_tx_7 2 + 304601 307688 . 1 3088 0 -chrXV 305177 307688 HC_gene_7985_tx_8 1 + 305177 307688 . 1 2512 0 -chrXV 305318 305895 HC_gene_7985_tx_13 3 + 305318 305895 . 1 578 0 -chrXV 305318 307688 HC_gene_7985_tx_9 32 + 305318 307688 . 1 2371 0 -chrXV 305318 307688 HC_gene_7985_tx_10 1 + 305318 307688 . 2 1508,528 0,1843 -chrXV 305318 307688 HC_gene_7985_tx_11 1 + 305318 307688 . 2 1736,571 0,1800 -chrXV 305496 307688 HC_gene_7985_tx_12 3 + 305496 307688 . 1 2193 0 -chrXV 307113 307688 HC_gene_7985_tx_14 17 + 307113 307688 . 1 576 0 -chrXV 307286 307675 MC_gene_8432_tx_1 1 - 307286 307675 . 1 390 0 -chrXV 307882 309145 HC_gene_7986_tx_1 68 + 307882 309145 . 1 1264 0 -chrXV 307882 309145 HC_gene_7986_tx_2 1 + 307882 309145 . 2 1153,48 0,1216 -chrXV 307882 309145 HC_gene_7986_tx_3 1 + 307882 309145 . 2 402,336 0,928 -chrXV 307882 309145 HC_gene_7986_tx_4 1 + 307882 309145 . 2 849,346 0,918 -chrXV 307882 309255 HC_gene_7986_tx_5 3 + 307882 309255 . 1 1374 0 -chrXV 308428 309145 HC_gene_7986_tx_6 10 + 308428 309145 . 1 718 0 -chrXV 309068 310190 HC_gene_8433_tx_1 6 - 309068 310190 . 1 1123 0 -chrXV 309068 310190 HC_gene_8433_tx_2 1 - 309068 310190 . 2 211,747 0,376 -chrXV 309068 310335 HC_gene_8433_tx_3 1 - 309068 310335 . 1 1268 0 -chrXV 309256 310190 HC_gene_8433_tx_4 1 - 309256 310190 . 1 935 0 -chrXV 309257 310190 HC_gene_8433_tx_5 1 - 309257 310190 . 1 934 0 -chrXV 309260 310190 HC_gene_8433_tx_6 1 - 309260 310190 . 1 931 0 -chrXV 309261 310190 HC_gene_8433_tx_7 1 - 309261 310190 . 1 930 0 -chrXV 309479 310006 LC_gene_7987_tx_1 1 + 309479 310006 . 1 528 0 -chrXV 310272 311095 HC_gene_7988_tx_1 47 + 310272 311095 . 1 824 0 -chrXV 310486 311095 HC_gene_7988_tx_2 5 + 310486 311095 . 1 610 0 -chrXV 310828 312453 HC_gene_8434_tx_1 7 - 310828 312453 . 1 1626 0 -chrXV 310981 312453 HC_gene_8434_tx_2 44 - 310981 312453 . 1 1473 0 -chrXV 310981 312453 HC_gene_8434_tx_3 1 - 310981 312453 . 2 893,454 0,1019 -chrXV 310981 312453 HC_gene_8434_tx_4 1 - 310981 312453 . 2 1019,125 0,1348 -chrXV 310981 312453 HC_gene_8434_tx_5 1 - 310981 312453 . 2 506,593 0,880 -chrXV 311383 313482 LC_gene_7989_tx_1 1 + 311383 313482 . 1 2100 0 -chrXV 312946 313620 HC_gene_8435_tx_1 4 - 312946 313620 . 1 675 0 -chrXV 312946 313694 HC_gene_8435_tx_2 15 - 312946 313694 . 1 749 0 -chrXV 312946 314282 HC_gene_8435_tx_3 4 - 312946 314282 . 1 1337 0 -chrXV 312946 314910 HC_gene_8435_tx_4 3 - 312946 314910 . 1 1965 0 -chrXV 312946 315061 HC_gene_8435_tx_5 4 - 312946 315061 . 1 2116 0 -chrXV 312946 315291 HC_gene_8435_tx_6 1 - 312946 315291 . 2 1434,261 0,2085 -chrXV 312946 315291 HC_gene_8435_tx_7 2 - 312946 315291 . 1 2346 0 -chrXV 312946 315514 HC_gene_8435_tx_8 16 - 312946 315514 . 1 2569 0 -chrXV 312946 315514 HC_gene_8435_tx_9 1 - 312946 315514 . 2 1955,568 0,2001 -chrXV 315276 315851 HC_gene_7990_tx_1 5 + 315276 315851 . 1 576 0 -chrXV 315761 315937 HC_gene_8436_tx_1 7 - 315761 315937 . 1 177 0 -chrXV 315761 316050 HC_gene_8436_tx_2 6 - 315761 316050 . 1 290 0 -chrXV 315761 316131 HC_gene_8436_tx_3 10 - 315761 316131 . 1 371 0 -chrXV 315761 316213 HC_gene_8436_tx_4 307 - 315761 316213 . 1 453 0 -chrXV 315761 316462 HC_gene_8436_tx_5 3 - 315761 316462 . 1 702 0 -chrXV 316718 321669 HC_gene_7991_tx_1 2 + 316718 321669 . 1 4952 0 -chrXV 317944 321669 HC_gene_7991_tx_2 1 + 317944 321669 . 1 3726 0 -chrXV 319318 321669 HC_gene_7991_tx_3 1 + 319318 321669 . 1 2352 0 -chrXV 319318 321669 HC_gene_7991_tx_4 1 + 319318 321669 . 2 1287,1010 0,1342 -chrXV 319564 321669 HC_gene_7991_tx_5 1 + 319564 321669 . 2 1362,690 0,1416 -chrXV 319564 321669 HC_gene_7991_tx_6 1 + 319564 321669 . 2 923,1120 0,986 -chrXV 319564 321669 HC_gene_7991_tx_7 3 + 319564 321669 . 1 2106 0 -chrXV 320245 321669 HC_gene_7991_tx_8 3 + 320245 321669 . 1 1425 0 -chrXV 321162 321669 HC_gene_7991_tx_9 26 + 321162 321669 . 1 508 0 -chrXV 321243 321669 HC_gene_7991_tx_10 18 + 321243 321669 . 1 427 0 -chrXV 321754 323003 HC_gene_8437_tx_1 32 - 321754 323003 . 1 1250 0 -chrXV 321754 323003 HC_gene_8437_tx_2 1 - 321754 323003 . 2 64,1139 0,111 -chrXV 322383 323439 MC_gene_7992_tx_1 1 + 322383 323439 . 1 1057 0 -chrXV 323204 324216 MC_gene_7993_tx_1 1 + 323204 324216 . 1 1013 0 -chrXV 323343 323992 HC_gene_8438_tx_1 20 - 323343 323992 . 1 650 0 -chrXV 323343 324372 HC_gene_8438_tx_2 125 - 323343 324372 . 1 1030 0 -chrXV 323343 324637 HC_gene_8438_tx_3 6 - 323343 324637 . 1 1295 0 -chrXV 324603 325215 HC_gene_7994_tx_1 4 + 324603 325215 . 1 613 0 -chrXV 324603 326270 HC_gene_7994_tx_2 1 + 324603 326270 . 1 1668 0 -chrXV 324646 325699 MC_gene_8439_tx_1 1 - 324646 325699 . 1 1054 0 -chrXV 324804 325123 HC_gene_7994_tx_6 3 + 324804 325123 . 1 320 0 -chrXV 324804 325215 HC_gene_7994_tx_7 6 + 324804 325215 . 1 412 0 -chrXV 324804 326270 HC_gene_7994_tx_3 18 + 324804 326270 . 1 1467 0 -chrXV 324934 326270 HC_gene_7994_tx_4 1 + 324934 326270 . 1 1337 0 -chrXV 325163 326270 HC_gene_7994_tx_5 5 + 325163 326270 . 1 1108 0 -chrXV 326166 326455 HC_gene_8440_tx_1 68 - 326166 326455 . 1 290 0 -chrXV 326791 329106 HC_gene_7995_tx_1 33 + 326791 329106 . 1 2316 0 -chrXV 326791 329106 HC_gene_7995_tx_2 1 + 326791 329106 . 2 1100,1167 0,1149 -chrXV 328940 329147 MC_gene_8441_tx_1 1 - 328940 329147 . 1 208 0 -chrXV 329376 331125 HC_gene_7996_tx_1 37 + 329376 331125 . 1 1750 0 -chrXV 329376 331125 HC_gene_7996_tx_2 1 + 329376 331125 . 2 998,141 0,1609 -chrXV 329376 331475 HC_gene_7996_tx_3 12 + 329376 331475 . 1 2100 0 -chrXV 329393 331475 HC_gene_7996_tx_4 2 + 329393 331475 . 1 2083 0 -chrXV 329406 331125 HC_gene_7996_tx_5 1 + 329406 331125 . 2 357,1275 0,445 -chrXV 329751 331125 HC_gene_7996_tx_6 4 + 329751 331125 . 1 1375 0 -chrXV 329911 331125 HC_gene_7996_tx_7 13 + 329911 331125 . 1 1215 0 -chrXV 329911 331475 HC_gene_7996_tx_9 1 + 329911 331475 . 1 1565 0 -chrXV 330085 331125 HC_gene_7996_tx_8 6 + 330085 331125 . 1 1041 0 -chrXV 330085 331475 HC_gene_7996_tx_10 2 + 330085 331475 . 1 1391 0 -chrXV 330324 331125 HC_gene_7996_tx_12 12 + 330324 331125 . 1 802 0 -chrXV 330324 331475 HC_gene_7996_tx_11 6 + 330324 331475 . 1 1152 0 -chrXV 330647 331125 HC_gene_7996_tx_13 8 + 330647 331125 . 1 479 0 -chrXV 330647 331475 HC_gene_7996_tx_14 3 + 330647 331475 . 1 829 0 -chrXV 331149 331624 HC_gene_8442_tx_1 4 - 331149 331624 . 1 476 0 -chrXV 331424 333083 HC_gene_7997_tx_1 4 + 331424 333083 . 1 1660 0 -chrXV 332108 333083 HC_gene_7997_tx_2 4 + 332108 333083 . 1 976 0 -chrXV 332279 333353 HC_gene_8443_tx_1 1 - 332279 333353 . 1 1075 0 -chrXV 332327 333083 HC_gene_7997_tx_3 6 + 332327 333083 . 1 757 0 -chrXV 332327 333169 HC_gene_7997_tx_4 2 + 332327 333169 . 1 843 0 -chrXV 332828 333083 HC_gene_7997_tx_5 7 + 332828 333083 . 1 256 0 -chrXV 332991 333353 HC_gene_8443_tx_2 1 - 332991 333353 . 1 363 0 -chrXV 333542 334557 HC_gene_7998_tx_1 89 + 333542 334557 . 1 1016 0 -chrXV 333542 334639 HC_gene_7998_tx_2 2 + 333542 334639 . 1 1098 0 -chrXV 334100 334557 HC_gene_7998_tx_3 21 + 334100 334557 . 1 458 0 -chrXV 334398 334879 HC_gene_8444_tx_1 9 - 334398 334879 . 1 482 0 -chrXV 334398 335144 HC_gene_8444_tx_2 6 - 334398 335144 . 1 747 0 -chrXV 334398 336426 HC_gene_8444_tx_3 1 - 334398 336426 . 1 2029 0 -chrXV 335343 336453 MC_gene_7999_tx_1 1 + 335343 336453 . 1 1111 0 -chrXV 336614 337421 MC_gene_8000_tx_1 1 + 336614 337421 . 1 808 0 -chrXV 337577 338791 MC_gene_8001_tx_1 1 + 337577 338791 . 1 1215 0 -chrXV 337591 338000 HC_gene_8445_tx_1 16 - 337591 338000 . 1 410 0 -chrXV 337591 338151 HC_gene_8445_tx_2 7 - 337591 338151 . 1 561 0 -chrXV 337591 338439 HC_gene_8445_tx_3 6 - 337591 338439 . 1 849 0 -chrXV 337591 338662 HC_gene_8445_tx_4 99 - 337591 338662 . 1 1072 0 -chrXV 337591 339195 HC_gene_8445_tx_6 1 - 337591 339195 . 1 1605 0 -chrXV 337591 339377 HC_gene_8445_tx_7 1 - 337591 339377 . 1 1787 0 -chrXV 337755 338709 MC_gene_8001_tx_2 1 + 337755 338709 . 1 955 0 -chrXV 337759 338662 HC_gene_8445_tx_5 1 - 337759 338662 . 1 904 0 -chrXV 338624 339060 HC_gene_8445_tx_8 1 - 338624 339060 . 1 437 0 -chrXV 338624 339550 HC_gene_8445_tx_9 1 - 338624 339550 . 1 927 0 -chrXV 338624 339691 HC_gene_8445_tx_10 1 - 338624 339691 . 1 1068 0 -chrXV 338624 339982 HC_gene_8445_tx_11 1 - 338624 339982 . 2 337,938 0,421 -chrXV 338624 339984 HC_gene_8445_tx_12 3 - 338624 339984 . 1 1361 0 -chrXV 338841 339060 HC_gene_8445_tx_20 60 - 338841 339060 . 1 220 0 -chrXV 338841 339195 HC_gene_8445_tx_21 166 - 338841 339195 . 1 355 0 -chrXV 338841 339377 HC_gene_8445_tx_22 159 - 338841 339377 . 1 537 0 -chrXV 338841 339550 HC_gene_8445_tx_23 48 - 338841 339550 . 1 710 0 -chrXV 338841 339691 HC_gene_8445_tx_24 70 - 338841 339691 . 1 851 0 -chrXV 338841 339984 HC_gene_8445_tx_13 470 - 338841 339984 . 1 1144 0 -chrXV 338841 339984 HC_gene_8445_tx_14 1 - 338841 339984 . 2 898,42 0,1102 -chrXV 338841 339984 HC_gene_8445_tx_15 1 - 338841 339984 . 2 369,556 0,588 -chrXV 338841 339984 HC_gene_8445_tx_16 1 - 338841 339984 . 2 53,1033 0,111 -chrXV 338841 339984 HC_gene_8445_tx_17 1 - 338841 339984 . 2 180,759 0,385 -chrXV 338841 339984 HC_gene_8445_tx_18 1 - 338841 339984 . 2 660,217 0,927 -chrXV 338841 340032 HC_gene_8445_tx_19 1 - 338841 340032 . 2 784,358 0,834 -chrXV 338917 339467 LC_gene_8002_tx_1 1 + 338917 339467 . 1 551 0 -chrXV 340962 342037 HC_gene_8446_tx_1 10 - 340962 342037 . 1 1076 0 -chrXV 340962 342116 HC_gene_8446_tx_2 7 - 340962 342116 . 1 1155 0 -chrXV 340962 342632 HC_gene_8446_tx_3 76 - 340962 342632 . 1 1671 0 -chrXV 342879 345930 HC_gene_8003_tx_1 1 + 342879 345930 . 1 3052 0 -chrXV 342999 343375 MC_gene_8447_tx_1 1 - 342999 343375 . 1 377 0 -chrXV 343646 345930 HC_gene_8003_tx_2 2 + 343646 345930 . 1 2285 0 -chrXV 343813 345930 HC_gene_8003_tx_3 1 + 343813 345930 . 1 2118 0 -chrXV 344290 345930 HC_gene_8003_tx_4 5 + 344290 345930 . 1 1641 0 -chrXV 344290 345930 HC_gene_8003_tx_5 1 + 344290 345930 . 2 325,1136 0,505 -chrXV 346127 347315 HC_gene_8448_tx_1 1 - 346127 347315 . 2 889,246 0,943 -chrXV 346127 347315 HC_gene_8448_tx_2 21 - 346127 347315 . 1 1189 0 -chrXV 346127 348141 HC_gene_8448_tx_3 1 - 346127 348141 . 1 2015 0 -chrXV 348322 349063 MC_gene_8004_tx_1 1 + 348322 349063 . 1 742 0 -chrXV 348705 349202 MC_gene_8005_tx_1 1 + 348705 349202 . 1 498 0 -chrXV 348985 349565 HC_gene_8449_tx_1 8 - 348985 349565 . 1 581 0 -chrXV 348985 349630 HC_gene_8449_tx_2 30 - 348985 349630 . 1 646 0 -chrXV 349841 353929 HC_gene_8006_tx_1 3 + 349841 353929 . 1 4089 0 -chrXV 353856 354108 MC_gene_8450_tx_1 1 - 353856 354108 . 1 253 0 -chrXV 354381 355140 LC_gene_8007_tx_1 1 + 354381 355140 . 1 760 0 -chrXV 355271 355808 MC_gene_8451_tx_1 1 - 355271 355808 . 1 538 0 -chrXV 355849 356350 MC_gene_8008_tx_1 1 + 355849 356350 . 1 502 0 -chrXV 356145 357204 HC_gene_8452_tx_1 19 - 356145 357204 . 1 1060 0 -chrXV 356491 357294 HC_gene_8009_tx_1 15 + 356491 357294 . 1 804 0 -chrXV 356491 357294 HC_gene_8009_tx_2 1 + 356491 357294 . 2 281,459 0,345 -chrXV 356736 357294 HC_gene_8009_tx_3 1 + 356736 357294 . 1 559 0 -chrXV 357415 360250 HC_gene_8010_tx_1 10 + 357415 360250 . 1 2836 0 -chrXV 357415 360444 HC_gene_8010_tx_2 14 + 357415 360444 . 1 3030 0 -chrXV 357639 360250 HC_gene_8010_tx_3 3 + 357639 360250 . 1 2612 0 -chrXV 357639 360444 HC_gene_8010_tx_4 2 + 357639 360444 . 1 2806 0 -chrXV 357884 360250 HC_gene_8010_tx_5 1 + 357884 360250 . 1 2367 0 -chrXV 357884 360444 HC_gene_8010_tx_6 6 + 357884 360444 . 1 2561 0 -chrXV 358207 360250 HC_gene_8010_tx_7 3 + 358207 360250 . 1 2044 0 -chrXV 358207 360444 HC_gene_8010_tx_8 4 + 358207 360444 . 1 2238 0 -chrXV 358331 359525 HC_gene_8010_tx_11 1 + 358331 359525 . 1 1195 0 -chrXV 358331 360250 HC_gene_8010_tx_9 1 + 358331 360250 . 1 1920 0 -chrXV 358331 360444 HC_gene_8010_tx_10 3 + 358331 360444 . 1 2114 0 -chrXV 359283 360250 HC_gene_8010_tx_12 4 + 359283 360250 . 1 968 0 -chrXV 359283 360444 HC_gene_8010_tx_13 11 + 359283 360444 . 1 1162 0 -chrXV 359650 360250 HC_gene_8010_tx_14 4 + 359650 360250 . 1 601 0 -chrXV 359650 360444 HC_gene_8010_tx_16 18 + 359650 360444 . 1 795 0 -chrXV 359650 360444 HC_gene_8010_tx_17 1 + 359650 360444 . 2 326,370 0,425 -chrXV 359770 360250 HC_gene_8010_tx_15 7 + 359770 360250 . 1 481 0 -chrXV 359770 360444 HC_gene_8010_tx_18 18 + 359770 360444 . 1 675 0 -chrXV 360183 360538 HC_gene_8453_tx_1 1 - 360183 360538 . 1 356 0 -chrXV 360183 360907 HC_gene_8453_tx_2 1 - 360183 360907 . 1 725 0 -chrXV 360183 361139 HC_gene_8453_tx_4 4 - 360183 361139 . 1 957 0 -chrXV 360300 360538 HC_gene_8453_tx_6 4 - 360300 360538 . 1 239 0 -chrXV 360300 360694 HC_gene_8453_tx_7 14 - 360300 360694 . 1 395 0 -chrXV 360300 360907 HC_gene_8453_tx_3 7 - 360300 360907 . 1 608 0 -chrXV 360300 361139 HC_gene_8453_tx_5 82 - 360300 361139 . 1 840 0 -chrXV 361379 364005 HC_gene_8011_tx_1 1 + 361379 364005 . 2 1335,1180 0,1447 -chrXV 361379 364005 HC_gene_8011_tx_2 1 + 361379 364005 . 1 2627 0 -chrXV 361379 364005 HC_gene_8011_tx_3 1 + 361379 364005 . 2 198,2331 0,296 -chrXV 361379 364005 HC_gene_8011_tx_4 1 + 361379 364005 . 2 1343,1125 0,1502 -chrXV 361761 364005 HC_gene_8011_tx_5 3 + 361761 364005 . 1 2245 0 -chrXV 363456 364002 MC_gene_8454_tx_1 1 - 363456 364002 . 1 547 0 -chrXV 363888 366189 MC_gene_8455_tx_1 1 - 363888 366189 . 1 2302 0 -chrXV 364321 366065 HC_gene_8012_tx_1 1 + 364321 366065 . 1 1745 0 -chrXV 365337 366065 HC_gene_8012_tx_2 1 + 365337 366065 . 1 729 0 -chrXV 365922 367493 MC_gene_8456_tx_1 1 - 365922 367493 . 1 1572 0 -chrXV 366422 367063 HC_gene_8013_tx_1 3 + 366422 367063 . 1 642 0 -chrXV 366731 367063 HC_gene_8013_tx_2 4 + 366731 367063 . 1 333 0 -chrXV 367008 367660 MC_gene_8457_tx_1 1 - 367008 367660 . 1 653 0 -chrXV 368023 369208 MC_gene_8014_tx_1 1 + 368023 369208 . 1 1186 0 -chrXV 368714 369380 HC_gene_8458_tx_1 2 - 368714 369380 . 1 667 0 -chrXV 368714 369468 HC_gene_8458_tx_2 5 - 368714 369468 . 1 755 0 -chrXV 369623 370537 HC_gene_8015_tx_1 11 + 369623 370537 . 1 915 0 -chrXV 369623 370537 HC_gene_8015_tx_2 1 + 369623 370537 . 2 168,610 0,305 -chrXV 370096 370537 HC_gene_8015_tx_3 1 + 370096 370537 . 1 442 0 -chrXV 370408 370662 HC_gene_8459_tx_1 47 - 370408 370662 . 1 255 0 -chrXV 370408 370883 HC_gene_8459_tx_2 1292 - 370408 370883 . 1 476 0 -chrXV 371102 371354 HC_gene_8460_tx_1 29 - 371102 371354 . 1 253 0 -chrXV 371170 371685 HC_gene_8016_tx_1 1 + 371170 371685 . 1 516 0 -chrXV 371170 372132 HC_gene_8016_tx_2 1 + 371170 372132 . 1 963 0 -chrXV 371170 372133 HC_gene_8016_tx_3 1 + 371170 372133 . 1 964 0 -chrXV 371170 372144 HC_gene_8016_tx_4 1 + 371170 372144 . 1 975 0 -chrXV 371190 371354 HC_gene_8460_tx_2 4 - 371190 371354 . 1 165 0 -chrXV 371625 372058 MC_gene_8461_tx_1 1 - 371625 372058 . 1 434 0 -chrXV 371638 371685 HC_gene_8016_tx_5 3 + 371638 371685 . 1 48 0 -chrXV 371638 372132 HC_gene_8016_tx_6 11 + 371638 372132 . 1 495 0 -chrXV 371638 372133 HC_gene_8016_tx_7 1 + 371638 372133 . 1 496 0 -chrXV 371638 372134 HC_gene_8016_tx_8 1 + 371638 372134 . 1 497 0 -chrXV 371638 372136 HC_gene_8016_tx_9 1 + 371638 372136 . 1 499 0 -chrXV 371638 372138 HC_gene_8016_tx_10 1 + 371638 372138 . 1 501 0 -chrXV 371638 372142 HC_gene_8016_tx_11 3 + 371638 372142 . 1 505 0 -chrXV 371638 372143 HC_gene_8016_tx_12 14 + 371638 372143 . 1 506 0 -chrXV 371638 372144 HC_gene_8016_tx_13 16 + 371638 372144 . 1 507 0 -chrXV 371638 372145 HC_gene_8016_tx_14 4 + 371638 372145 . 1 508 0 -chrXV 371638 372147 HC_gene_8016_tx_15 1 + 371638 372147 . 1 510 0 -chrXV 371638 372148 HC_gene_8016_tx_16 3 + 371638 372148 . 1 511 0 -chrXV 371638 372149 HC_gene_8016_tx_17 3 + 371638 372149 . 1 512 0 -chrXV 371638 372151 HC_gene_8016_tx_18 1 + 371638 372151 . 1 514 0 -chrXV 371638 372152 HC_gene_8016_tx_19 3 + 371638 372152 . 1 515 0 -chrXV 371638 372160 HC_gene_8016_tx_20 3 + 371638 372160 . 1 523 0 -chrXV 371638 372162 HC_gene_8016_tx_21 5 + 371638 372162 . 1 525 0 -chrXV 371638 372163 HC_gene_8016_tx_22 2 + 371638 372163 . 1 526 0 -chrXV 371638 372492 HC_gene_8016_tx_23 2 + 371638 372492 . 1 855 0 -chrXV 372252 373112 HC_gene_8462_tx_1 2 - 372252 373112 . 1 861 0 -chrXV 372402 373112 HC_gene_8462_tx_2 2 - 372402 373112 . 1 711 0 -chrXV 372402 373464 HC_gene_8462_tx_4 11 - 372402 373464 . 1 1063 0 -chrXV 372454 373112 HC_gene_8462_tx_3 1 - 372454 373112 . 1 659 0 -chrXV 372454 373464 HC_gene_8462_tx_5 12 - 372454 373464 . 1 1011 0 -chrXV 372559 373464 HC_gene_8462_tx_6 1 - 372559 373464 . 1 906 0 -chrXV 372643 373112 HC_gene_8462_tx_9 34 - 372643 373112 . 1 470 0 -chrXV 372643 373464 HC_gene_8462_tx_7 188 - 372643 373464 . 1 822 0 -chrXV 372643 373464 HC_gene_8462_tx_8 1 - 372643 373464 . 2 267,421 0,401 -chrXV 373586 375888 HC_gene_8463_tx_1 1 - 373586 375888 . 1 2303 0 -chrXV 373679 374133 HC_gene_8463_tx_3 2 - 373679 374133 . 1 455 0 -chrXV 373679 375888 HC_gene_8463_tx_2 6 - 373679 375888 . 1 2210 0 -chrXV 374421 374835 MC_gene_8017_tx_1 1 + 374421 374835 . 1 415 0 -chrXV 375417 376049 MC_gene_8018_tx_1 1 + 375417 376049 . 1 633 0 -chrXV 375958 377113 HC_gene_8464_tx_1 2 - 375958 377113 . 1 1156 0 -chrXV 375958 377575 HC_gene_8464_tx_2 1 - 375958 377575 . 1 1618 0 -chrXV 375958 377633 HC_gene_8464_tx_3 1 - 375958 377633 . 1 1676 0 -chrXV 375958 377785 HC_gene_8464_tx_4 9 - 375958 377785 . 1 1828 0 -chrXV 375958 377874 HC_gene_8464_tx_5 2 - 375958 377874 . 1 1917 0 -chrXV 378074 379031 LC_gene_8465_tx_1 1 - 378074 379031 . 1 958 0 -chrXV 378142 379654 HC_gene_8019_tx_1 1 + 378142 379654 . 1 1513 0 -chrXV 378142 379680 HC_gene_8019_tx_2 1 + 378142 379680 . 1 1539 0 -chrXV 378142 379701 HC_gene_8019_tx_3 2 + 378142 379701 . 1 1560 0 -chrXV 378142 379710 HC_gene_8019_tx_4 1 + 378142 379710 . 1 1569 0 -chrXV 378142 379714 HC_gene_8019_tx_5 3 + 378142 379714 . 1 1573 0 -chrXV 378142 379715 HC_gene_8019_tx_6 3 + 378142 379715 . 1 1574 0 -chrXV 378142 379716 HC_gene_8019_tx_7 3 + 378142 379716 . 1 1575 0 -chrXV 378142 379727 HC_gene_8019_tx_8 1 + 378142 379727 . 1 1586 0 -chrXV 378142 379886 HC_gene_8019_tx_9 1 + 378142 379886 . 1 1745 0 -chrXV 378142 380990 HC_gene_8019_tx_10 1 + 378142 380990 . 1 2849 0 -chrXV 379802 380871 HC_gene_8019_tx_11 2 + 379802 380871 . 1 1070 0 -chrXV 379802 380990 HC_gene_8019_tx_12 18 + 379802 380990 . 1 1189 0 -chrXV 379811 380990 HC_gene_8019_tx_13 1 + 379811 380990 . 1 1180 0 -chrXV 380191 380707 MC_gene_8466_tx_1 1 - 380191 380707 . 2 184,258 0,259 -chrXV 381002 382912 HC_gene_8020_tx_1 136 + 381002 382912 . 1 1911 0 -chrXV 381002 382912 HC_gene_8020_tx_2 1 + 381002 382912 . 2 969,864 0,1047 -chrXV 381002 382912 HC_gene_8020_tx_3 1 + 381002 382912 . 2 1012,842 0,1069 -chrXV 381002 382912 HC_gene_8020_tx_4 1 + 381002 382912 . 2 535,1321 0,590 -chrXV 381002 382912 HC_gene_8020_tx_5 1 + 381002 382912 . 2 220,1604 0,307 -chrXV 381279 382912 HC_gene_8020_tx_6 2 + 381279 382912 . 1 1634 0 -chrXV 381332 382912 HC_gene_8020_tx_7 8 + 381332 382912 . 1 1581 0 -chrXV 381631 382912 HC_gene_8020_tx_8 18 + 381631 382912 . 1 1282 0 -chrXV 382217 382912 HC_gene_8020_tx_9 13 + 382217 382912 . 1 696 0 -chrXV 382347 382912 HC_gene_8020_tx_10 28 + 382347 382912 . 1 566 0 -chrXV 382463 382912 HC_gene_8020_tx_11 37 + 382463 382912 . 1 450 0 -chrXV 383206 384079 HC_gene_8467_tx_1 4 - 383206 384079 . 1 874 0 -chrXV 383206 384509 HC_gene_8467_tx_3 10 - 383206 384509 . 1 1304 0 -chrXV 383330 384079 HC_gene_8467_tx_2 1 - 383330 384079 . 1 750 0 -chrXV 383330 384509 HC_gene_8467_tx_4 2 - 383330 384509 . 1 1180 0 -chrXV 385182 386372 HC_gene_8021_tx_1 3 + 385182 386372 . 1 1191 0 -chrXV 385248 386511 HC_gene_8021_tx_2 1 + 385248 386511 . 1 1264 0 -chrXV 385527 386511 HC_gene_8021_tx_3 2 + 385527 386511 . 1 985 0 -chrXV 385728 386375 MC_gene_8468_tx_1 1 - 385728 386375 . 1 648 0 -chrXV 386722 389508 HC_gene_8022_tx_1 2 + 386722 389508 . 1 2787 0 -chrXV 386722 389513 HC_gene_8022_tx_2 1 + 386722 389513 . 1 2792 0 -chrXV 386722 389515 HC_gene_8022_tx_3 1 + 386722 389515 . 1 2794 0 -chrXV 386722 389540 HC_gene_8022_tx_4 1 + 386722 389540 . 1 2819 0 -chrXV 386722 389541 HC_gene_8022_tx_5 1 + 386722 389541 . 1 2820 0 -chrXV 386722 389569 HC_gene_8022_tx_6 1 + 386722 389569 . 1 2848 0 -chrXV 389083 389521 HC_gene_8022_tx_7 2 + 389083 389521 . 1 439 0 -chrXV 389083 389522 HC_gene_8022_tx_8 2 + 389083 389522 . 1 440 0 -chrXV 389083 389534 HC_gene_8022_tx_9 3 + 389083 389534 . 1 452 0 -chrXV 389188 389496 HC_gene_8023_tx_1 1 + 389188 389496 . 1 309 0 -chrXV 389188 389505 HC_gene_8023_tx_2 1 + 389188 389505 . 1 318 0 -chrXV 389188 389508 HC_gene_8023_tx_3 1 + 389188 389508 . 1 321 0 -chrXV 389188 389512 HC_gene_8023_tx_4 1 + 389188 389512 . 1 325 0 -chrXV 389188 389513 HC_gene_8023_tx_5 1 + 389188 389513 . 1 326 0 -chrXV 389188 389515 HC_gene_8023_tx_6 2 + 389188 389515 . 1 328 0 -chrXV 389188 389517 HC_gene_8023_tx_7 1 + 389188 389517 . 1 330 0 -chrXV 389188 389521 HC_gene_8023_tx_8 5 + 389188 389521 . 1 334 0 -chrXV 389188 389522 HC_gene_8023_tx_9 1 + 389188 389522 . 1 335 0 -chrXV 389188 389527 HC_gene_8023_tx_10 1 + 389188 389527 . 1 340 0 -chrXV 389188 389530 HC_gene_8023_tx_11 1 + 389188 389530 . 1 343 0 -chrXV 389188 389534 HC_gene_8023_tx_12 18 + 389188 389534 . 1 347 0 -chrXV 389188 389535 HC_gene_8023_tx_13 1 + 389188 389535 . 1 348 0 -chrXV 389188 389536 HC_gene_8023_tx_14 3 + 389188 389536 . 1 349 0 -chrXV 389188 389539 HC_gene_8023_tx_15 1 + 389188 389539 . 1 352 0 -chrXV 389188 389541 HC_gene_8023_tx_16 1 + 389188 389541 . 1 354 0 -chrXV 389188 389542 HC_gene_8023_tx_17 1 + 389188 389542 . 1 355 0 -chrXV 389188 389544 HC_gene_8023_tx_18 1 + 389188 389544 . 1 357 0 -chrXV 389188 389547 HC_gene_8023_tx_19 1 + 389188 389547 . 1 360 0 -chrXV 389188 389548 HC_gene_8023_tx_20 1 + 389188 389548 . 1 361 0 -chrXV 389188 389553 HC_gene_8023_tx_21 2 + 389188 389553 . 1 366 0 -chrXV 389188 389554 HC_gene_8023_tx_22 1 + 389188 389554 . 1 367 0 -chrXV 389188 389556 HC_gene_8023_tx_23 2 + 389188 389556 . 1 369 0 -chrXV 389188 389559 HC_gene_8023_tx_24 1 + 389188 389559 . 1 372 0 -chrXV 389188 389565 HC_gene_8023_tx_25 1 + 389188 389565 . 1 378 0 -chrXV 389188 389569 HC_gene_8023_tx_26 1 + 389188 389569 . 1 382 0 -chrXV 389188 389586 HC_gene_8023_tx_27 2 + 389188 389586 . 1 399 0 -chrXV 389188 389591 HC_gene_8023_tx_28 2 + 389188 389591 . 1 404 0 -chrXV 389188 389592 HC_gene_8023_tx_29 1 + 389188 389592 . 1 405 0 -chrXV 389188 389593 HC_gene_8023_tx_30 1 + 389188 389593 . 1 406 0 -chrXV 389188 389598 HC_gene_8023_tx_31 1 + 389188 389598 . 1 411 0 -chrXV 389188 389601 HC_gene_8023_tx_32 2 + 389188 389601 . 1 414 0 -chrXV 389188 390103 HC_gene_8023_tx_33 1 + 389188 390103 . 1 916 0 -chrXV 389523 391376 MC_gene_8469_tx_1 1 - 389523 391376 . 1 1854 0 -chrXV 389617 391374 HC_gene_8024_tx_1 1 + 389617 391374 . 1 1758 0 -chrXV 389672 391279 MC_gene_8469_tx_2 1 - 389672 391279 . 1 1608 0 -chrXV 392305 393144 MC_gene_8025_tx_1 1 + 392305 393144 . 1 840 0 -chrXV 392347 394639 HC_gene_8470_tx_1 9 - 392347 394639 . 1 2293 0 -chrXV 392347 394639 HC_gene_8470_tx_2 1 - 392347 394639 . 2 932,1265 0,1028 -chrXV 392347 394639 HC_gene_8470_tx_3 1 - 392347 394639 . 2 1720,432 0,1861 -chrXV 393715 394189 MC_gene_8026_tx_1 1 + 393715 394189 . 1 475 0 -chrXV 394730 397134 HC_gene_8471_tx_1 2 - 394730 397134 . 1 2405 0 -chrXV 394730 397341 HC_gene_8471_tx_2 9 - 394730 397341 . 1 2612 0 -chrXV 394819 395401 HC_gene_8471_tx_4 1 - 394819 395401 . 1 583 0 -chrXV 394819 397341 HC_gene_8471_tx_3 1 - 394819 397341 . 1 2523 0 -chrXV 396512 397824 LC_gene_8027_tx_1 1 + 396512 397824 . 1 1313 0 -chrXV 397240 400106 HC_gene_8472_tx_1 1 - 397240 400106 . 1 2867 0 -chrXV 397240 400106 HC_gene_8472_tx_2 1 - 397240 400106 . 2 215,2533 0,334 -chrXV 397527 399900 HC_gene_8472_tx_3 2 - 397527 399900 . 1 2374 0 -chrXV 397527 400106 HC_gene_8472_tx_4 5 - 397527 400106 . 1 2580 0 -chrXV 399098 400106 HC_gene_8472_tx_5 2 - 399098 400106 . 1 1009 0 -chrXV 400144 401405 HC_gene_8473_tx_1 1 - 400144 401405 . 1 1262 0 -chrXV 400288 401405 HC_gene_8473_tx_2 1 - 400288 401405 . 1 1118 0 -chrXV 400288 401740 HC_gene_8473_tx_3 1 - 400288 401740 . 1 1453 0 -chrXV 400344 401285 HC_gene_8028_tx_1 52 + 400344 401285 . 1 942 0 -chrXV 400529 401285 HC_gene_8028_tx_2 9 + 400529 401285 . 1 757 0 -chrXV 400700 401285 HC_gene_8028_tx_3 9 + 400700 401285 . 1 586 0 -chrXV 400986 401405 HC_gene_8473_tx_4 4 - 400986 401405 . 1 420 0 -chrXV 401531 402739 HC_gene_8029_tx_1 22 + 401531 402739 . 1 1209 0 -chrXV 401671 402739 HC_gene_8029_tx_2 5 + 401671 402739 . 1 1069 0 -chrXV 402016 402681 HC_gene_8029_tx_3 2 + 402016 402681 . 1 666 0 -chrXV 402016 402739 HC_gene_8029_tx_4 2 + 402016 402739 . 1 724 0 -chrXV 402663 405440 HC_gene_8474_tx_1 13 - 402663 405440 . 1 2778 0 -chrXV 404668 405440 HC_gene_8474_tx_2 1 - 404668 405440 . 1 773 0 -chrXV 404935 405440 HC_gene_8474_tx_3 2 - 404935 405440 . 1 506 0 -chrXV 405601 406799 HC_gene_8030_tx_1 76 + 405601 406799 . 1 1199 0 -chrXV 405601 406799 HC_gene_8030_tx_2 1 + 405601 406799 . 2 727,425 0,774 -chrXV 405601 406799 HC_gene_8030_tx_3 1 + 405601 406799 . 2 1120,37 0,1162 -chrXV 405601 406799 HC_gene_8030_tx_4 1 + 405601 406799 . 2 607,468 0,731 -chrXV 405601 406799 HC_gene_8030_tx_5 1 + 405601 406799 . 2 119,994 0,205 -chrXV 405613 406799 HC_gene_8030_tx_6 2 + 405613 406799 . 1 1187 0 -chrXV 405617 406799 HC_gene_8030_tx_7 1 + 405617 406799 . 1 1183 0 -chrXV 405625 406799 HC_gene_8030_tx_8 1 + 405625 406799 . 1 1175 0 -chrXV 405627 406799 HC_gene_8030_tx_9 1 + 405627 406799 . 1 1173 0 -chrXV 405628 406799 HC_gene_8030_tx_10 1 + 405628 406799 . 1 1172 0 -chrXV 405629 406799 HC_gene_8030_tx_11 1 + 405629 406799 . 1 1171 0 -chrXV 405633 406799 HC_gene_8030_tx_12 3 + 405633 406799 . 1 1167 0 -chrXV 405636 406799 HC_gene_8030_tx_13 1 + 405636 406799 . 1 1164 0 -chrXV 405639 406799 HC_gene_8030_tx_14 1 + 405639 406799 . 1 1161 0 -chrXV 405643 406799 HC_gene_8030_tx_15 1 + 405643 406799 . 1 1157 0 -chrXV 405773 406799 HC_gene_8030_tx_16 11 + 405773 406799 . 1 1027 0 -chrXV 406094 406799 HC_gene_8030_tx_17 9 + 406094 406799 . 1 706 0 -chrXV 406220 406799 HC_gene_8030_tx_18 9 + 406220 406799 . 1 580 0 -chrXV 406459 406799 HC_gene_8030_tx_19 16 + 406459 406799 . 1 341 0 -chrXV 406691 408134 HC_gene_8475_tx_1 6 - 406691 408134 . 1 1444 0 -chrXV 406837 408143 HC_gene_8031_tx_1 1 + 406837 408143 . 1 1307 0 -chrXV 406837 408266 HC_gene_8031_tx_2 1 + 406837 408266 . 1 1430 0 -chrXV 407077 408143 HC_gene_8031_tx_3 1 + 407077 408143 . 1 1067 0 -chrXV 407077 408266 HC_gene_8031_tx_4 25 + 407077 408266 . 1 1190 0 -chrXV 407887 408134 HC_gene_8475_tx_2 123 - 407887 408134 . 1 248 0 -chrXV 408372 409711 HC_gene_8032_tx_1 35 + 408372 409711 . 1 1340 0 -chrXV 408372 409711 HC_gene_8032_tx_2 1 + 408372 409711 . 2 852,359 0,981 -chrXV 408372 409711 HC_gene_8032_tx_3 1 + 408372 409711 . 2 146,1103 0,237 -chrXV 408621 409711 HC_gene_8032_tx_4 8 + 408621 409711 . 1 1091 0 -chrXV 408701 409711 HC_gene_8032_tx_5 1 + 408701 409711 . 1 1011 0 -chrXV 408801 409711 HC_gene_8032_tx_6 8 + 408801 409711 . 1 911 0 -chrXV 409044 409711 HC_gene_8032_tx_7 9 + 409044 409711 . 1 668 0 -chrXV 409147 409711 HC_gene_8032_tx_8 5 + 409147 409711 . 1 565 0 -chrXV 409304 409711 HC_gene_8032_tx_9 10 + 409304 409711 . 1 408 0 -chrXV 409606 410010 HC_gene_8476_tx_1 6 - 409606 410010 . 1 405 0 -chrXV 409773 410010 HC_gene_8476_tx_2 30 - 409773 410010 . 1 238 0 -chrXV 409773 410130 HC_gene_8476_tx_3 1 - 409773 410130 . 1 358 0 -chrXV 410465 412377 HC_gene_8033_tx_1 16 + 410465 412377 . 1 1913 0 -chrXV 410465 412377 HC_gene_8033_tx_2 1 + 410465 412377 . 2 1018,777 0,1136 -chrXV 410465 412377 HC_gene_8033_tx_3 1 + 410465 412377 . 2 958,879 0,1034 -chrXV 410465 412377 HC_gene_8033_tx_4 1 + 410465 412377 . 2 936,870 0,1043 -chrXV 410465 412489 HC_gene_8033_tx_5 27 + 410465 412489 . 1 2025 0 -chrXV 410465 412489 HC_gene_8033_tx_6 1 + 410465 412489 . 2 338,1533 0,492 -chrXV 410684 412377 HC_gene_8033_tx_7 4 + 410684 412377 . 1 1694 0 -chrXV 410684 412489 HC_gene_8033_tx_8 4 + 410684 412489 . 1 1806 0 -chrXV 410684 412489 HC_gene_8033_tx_9 1 + 410684 412489 . 2 181,1369 0,437 -chrXV 411791 412377 HC_gene_8033_tx_10 6 + 411791 412377 . 1 587 0 -chrXV 411791 412489 HC_gene_8033_tx_11 12 + 411791 412489 . 1 699 0 -chrXV 412155 412486 MC_gene_8477_tx_1 1 - 412155 412486 . 1 332 0 -chrXV 412760 413709 HC_gene_8034_tx_1 36 + 412760 413709 . 1 950 0 -chrXV 412851 413709 HC_gene_8034_tx_2 10 + 412851 413709 . 1 859 0 -chrXV 413555 414064 MC_gene_8478_tx_1 1 - 413555 414064 . 1 510 0 -chrXV 413831 414192 HC_gene_8035_tx_1 39 + 413831 414192 . 1 362 0 -chrXV 413831 414193 HC_gene_8035_tx_2 3 + 413831 414193 . 1 363 0 -chrXV 413831 414194 HC_gene_8035_tx_3 29 + 413831 414194 . 1 364 0 -chrXV 413831 414195 HC_gene_8035_tx_4 4 + 413831 414195 . 1 365 0 -chrXV 413831 414196 HC_gene_8035_tx_5 13 + 413831 414196 . 1 366 0 -chrXV 413831 414197 HC_gene_8035_tx_6 6 + 413831 414197 . 1 367 0 -chrXV 413831 414198 HC_gene_8035_tx_7 30 + 413831 414198 . 1 368 0 -chrXV 413831 414199 HC_gene_8035_tx_8 1 + 413831 414199 . 1 369 0 -chrXV 413831 414200 HC_gene_8035_tx_9 2 + 413831 414200 . 1 370 0 -chrXV 413831 414201 HC_gene_8035_tx_10 18 + 413831 414201 . 1 371 0 -chrXV 413831 414202 HC_gene_8035_tx_11 1 + 413831 414202 . 1 372 0 -chrXV 413831 414203 HC_gene_8035_tx_12 4 + 413831 414203 . 1 373 0 -chrXV 413831 414204 HC_gene_8035_tx_13 9 + 413831 414204 . 1 374 0 -chrXV 413831 414205 HC_gene_8035_tx_14 10 + 413831 414205 . 1 375 0 -chrXV 413831 414206 HC_gene_8035_tx_15 6 + 413831 414206 . 1 376 0 -chrXV 413831 414207 HC_gene_8035_tx_16 2 + 413831 414207 . 1 377 0 -chrXV 413831 414208 HC_gene_8035_tx_17 9 + 413831 414208 . 1 378 0 -chrXV 413831 414209 HC_gene_8035_tx_18 1 + 413831 414209 . 1 379 0 -chrXV 413831 414211 HC_gene_8035_tx_19 4 + 413831 414211 . 1 381 0 -chrXV 413831 414214 HC_gene_8035_tx_20 1 + 413831 414214 . 1 384 0 -chrXV 413831 414218 HC_gene_8035_tx_21 2 + 413831 414218 . 1 388 0 -chrXV 413831 414220 HC_gene_8035_tx_22 4 + 413831 414220 . 1 390 0 -chrXV 413831 414221 HC_gene_8035_tx_23 1 + 413831 414221 . 1 391 0 -chrXV 413831 414222 HC_gene_8035_tx_24 1 + 413831 414222 . 1 392 0 -chrXV 413831 414225 HC_gene_8035_tx_25 1 + 413831 414225 . 1 395 0 -chrXV 413831 414226 HC_gene_8035_tx_26 3 + 413831 414226 . 1 396 0 -chrXV 413831 414229 HC_gene_8035_tx_27 1 + 413831 414229 . 1 399 0 -chrXV 413831 414230 HC_gene_8035_tx_28 1 + 413831 414230 . 1 400 0 -chrXV 413831 414231 HC_gene_8035_tx_29 1 + 413831 414231 . 1 401 0 -chrXV 413831 414232 HC_gene_8035_tx_30 2 + 413831 414232 . 1 402 0 -chrXV 413831 414236 HC_gene_8035_tx_31 2 + 413831 414236 . 1 406 0 -chrXV 413831 414238 HC_gene_8035_tx_32 17 + 413831 414238 . 1 408 0 -chrXV 413831 414239 HC_gene_8035_tx_33 2 + 413831 414239 . 1 409 0 -chrXV 413831 414241 HC_gene_8035_tx_34 1 + 413831 414241 . 1 411 0 -chrXV 413831 414243 HC_gene_8035_tx_35 2 + 413831 414243 . 1 413 0 -chrXV 413831 414244 HC_gene_8035_tx_36 2 + 413831 414244 . 1 414 0 -chrXV 413831 414246 HC_gene_8035_tx_37 5 + 413831 414246 . 1 416 0 -chrXV 413831 414256 HC_gene_8035_tx_38 1 + 413831 414256 . 1 426 0 -chrXV 413831 414264 HC_gene_8035_tx_39 3 + 413831 414264 . 1 434 0 -chrXV 413831 414265 HC_gene_8035_tx_40 1 + 413831 414265 . 1 435 0 -chrXV 413831 414273 HC_gene_8035_tx_41 1 + 413831 414273 . 1 443 0 -chrXV 413831 414286 HC_gene_8035_tx_42 4 + 413831 414286 . 1 456 0 -chrXV 413831 414288 HC_gene_8035_tx_43 1 + 413831 414288 . 1 458 0 -chrXV 413831 414293 HC_gene_8035_tx_44 1 + 413831 414293 . 1 463 0 -chrXV 413831 414312 HC_gene_8035_tx_45 1 + 413831 414312 . 1 482 0 -chrXV 413831 414316 HC_gene_8035_tx_46 2 + 413831 414316 . 1 486 0 -chrXV 413831 414325 HC_gene_8035_tx_47 1 + 413831 414325 . 1 495 0 -chrXV 413831 414328 HC_gene_8035_tx_48 2 + 413831 414328 . 1 498 0 -chrXV 413831 414329 HC_gene_8035_tx_49 2 + 413831 414329 . 1 499 0 -chrXV 413831 414331 HC_gene_8035_tx_50 1 + 413831 414331 . 1 501 0 -chrXV 413831 414334 HC_gene_8035_tx_51 1 + 413831 414334 . 1 504 0 -chrXV 413831 414346 HC_gene_8035_tx_52 2 + 413831 414346 . 1 516 0 -chrXV 413831 414348 HC_gene_8035_tx_53 1 + 413831 414348 . 1 518 0 -chrXV 413831 414353 HC_gene_8035_tx_54 2 + 413831 414353 . 1 523 0 -chrXV 413831 414481 HC_gene_8035_tx_55 37 + 413831 414481 . 1 651 0 -chrXV 414378 415069 HC_gene_8479_tx_1 24 - 414378 415069 . 1 692 0 -chrXV 414378 415162 HC_gene_8479_tx_2 18 - 414378 415162 . 1 785 0 -chrXV 414378 415591 HC_gene_8479_tx_3 20 - 414378 415591 . 1 1214 0 -chrXV 414378 415685 HC_gene_8479_tx_4 9 - 414378 415685 . 1 1308 0 -chrXV 414378 415685 HC_gene_8479_tx_5 1 - 414378 415685 . 2 514,696 0,612 -chrXV 414378 415940 HC_gene_8479_tx_6 106 - 414378 415940 . 1 1563 0 -chrXV 414378 415940 HC_gene_8479_tx_7 1 - 414378 415940 . 2 422,296 0,1267 -chrXV 414378 415940 HC_gene_8479_tx_8 1 - 414378 415940 . 2 741,764 0,799 -chrXV 414378 415940 HC_gene_8479_tx_9 1 - 414378 415940 . 2 736,763 0,800 -chrXV 416176 417684 HC_gene_8480_tx_1 16 - 416176 417684 . 1 1509 0 -chrXV 416176 417821 HC_gene_8480_tx_2 50 - 416176 417821 . 1 1646 0 -chrXV 417943 418524 MC_gene_8036_tx_1 1 + 417943 418524 . 1 582 0 -chrXV 418167 418633 MC_gene_8037_tx_1 1 + 418167 418633 . 1 467 0 -chrXV 418397 420260 HC_gene_8481_tx_1 1 - 418397 420260 . 1 1864 0 -chrXV 418397 420484 HC_gene_8481_tx_2 2 - 418397 420484 . 1 2088 0 -chrXV 418397 421350 HC_gene_8481_tx_5 1 - 418397 421350 . 1 2954 0 -chrXV 418397 421709 HC_gene_8481_tx_6 1 - 418397 421709 . 1 3313 0 -chrXV 418537 418922 HC_gene_8481_tx_9 13 - 418537 418922 . 1 386 0 -chrXV 418537 420260 HC_gene_8481_tx_3 5 - 418537 420260 . 1 1724 0 -chrXV 418537 420484 HC_gene_8481_tx_4 3 - 418537 420484 . 1 1948 0 -chrXV 418537 421350 HC_gene_8481_tx_7 1 - 418537 421350 . 1 2814 0 -chrXV 418537 421709 HC_gene_8481_tx_8 9 - 418537 421709 . 1 3173 0 -chrXV 421887 422238 MC_gene_8038_tx_1 1 + 421887 422238 . 1 352 0 -chrXV 422417 424794 HC_gene_8039_tx_1 2 + 422417 424794 . 1 2378 0 -chrXV 422473 423918 HC_gene_8482_tx_1 69 - 422473 423918 . 1 1446 0 -chrXV 422585 424794 HC_gene_8039_tx_2 1 + 422585 424794 . 1 2210 0 -chrXV 422598 423918 HC_gene_8482_tx_2 10 - 422598 423918 . 1 1321 0 -chrXV 424004 424549 MC_gene_8483_tx_1 1 - 424004 424549 . 1 546 0 -chrXV 424674 425194 HC_gene_8484_tx_1 35 - 424674 425194 . 1 521 0 -chrXV 424674 425381 HC_gene_8484_tx_2 34 - 424674 425381 . 1 708 0 -chrXV 424674 426028 HC_gene_8484_tx_3 9 - 424674 426028 . 1 1355 0 -chrXV 424674 426028 HC_gene_8484_tx_4 1 - 424674 426028 . 2 771,174 0,1181 -chrXV 424674 426028 HC_gene_8484_tx_5 1 - 424674 426028 . 2 118,1159 0,196 -chrXV 424674 426127 HC_gene_8484_tx_6 148 - 424674 426127 . 1 1454 0 -chrXV 424674 426127 HC_gene_8484_tx_7 1 - 424674 426127 . 2 511,877 0,577 -chrXV 424674 426134 HC_gene_8484_tx_8 1 - 424674 426134 . 2 651,762 0,699 -chrXV 424674 426243 HC_gene_8484_tx_9 1 - 424674 426243 . 1 1570 0 -chrXV 424674 426305 HC_gene_8484_tx_10 1 - 424674 426305 . 1 1632 0 -chrXV 424814 425030 HC_gene_8040_tx_1 11 + 424814 425030 . 1 217 0 -chrXV 425456 426123 LC_gene_8041_tx_1 1 + 425456 426123 . 1 668 0 -chrXV 426337 426945 HC_gene_8485_tx_1 3 - 426337 426945 . 1 609 0 -chrXV 426337 427013 HC_gene_8485_tx_2 1 - 426337 427013 . 1 677 0 -chrXV 426337 427350 HC_gene_8485_tx_3 4 - 426337 427350 . 1 1014 0 -chrXV 426503 426945 HC_gene_8485_tx_11 39 - 426503 426945 . 1 443 0 -chrXV 426503 427013 HC_gene_8485_tx_12 79 - 426503 427013 . 1 511 0 -chrXV 426503 427350 HC_gene_8485_tx_4 185 - 426503 427350 . 1 848 0 -chrXV 426503 427350 HC_gene_8485_tx_5 1 - 426503 427350 . 2 27,674 0,174 -chrXV 426503 427350 HC_gene_8485_tx_6 1 - 426503 427350 . 2 259,364 0,484 -chrXV 426503 427350 HC_gene_8485_tx_7 1 - 426503 427350 . 2 311,400 0,448 -chrXV 426503 427350 HC_gene_8485_tx_8 1 - 426503 427350 . 2 254,264 0,584 -chrXV 426503 427350 HC_gene_8485_tx_9 1 - 426503 427350 . 2 51,735 0,113 -chrXV 426613 426945 HC_gene_8485_tx_13 4 - 426613 426945 . 1 333 0 -chrXV 426613 427013 HC_gene_8485_tx_14 16 - 426613 427013 . 1 401 0 -chrXV 426613 427350 HC_gene_8485_tx_10 44 - 426613 427350 . 1 738 0 -chrXV 426620 427122 MC_gene_8042_tx_1 1 + 426620 427122 . 1 503 0 -chrXV 427634 427846 HC_gene_8043_tx_1 10 + 427634 427846 . 1 213 0 -chrXV 427753 428147 HC_gene_8486_tx_1 18 - 427753 428147 . 1 395 0 -chrXV 427753 428147 HC_gene_8486_tx_2 1 - 427753 428147 . 2 135,212 0,183 -chrXV 427753 428326 HC_gene_8486_tx_3 4 - 427753 428326 . 1 574 0 -chrXV 427753 428897 HC_gene_8486_tx_4 3 - 427753 428897 . 1 1145 0 -chrXV 427753 429077 HC_gene_8486_tx_5 2 - 427753 429077 . 1 1325 0 -chrXV 427753 429541 HC_gene_8486_tx_6 1 - 427753 429541 . 1 1789 0 -chrXV 427753 429984 HC_gene_8486_tx_7 1 - 427753 429984 . 2 1058,1090 0,1142 -chrXV 427753 429999 HC_gene_8486_tx_8 4 - 427753 429999 . 1 2247 0 -chrXV 430188 430596 HC_gene_8487_tx_1 18 - 430188 430596 . 1 409 0 -chrXV 430188 431248 HC_gene_8487_tx_2 19 - 430188 431248 . 1 1061 0 -chrXV 430188 431377 HC_gene_8487_tx_3 1 - 430188 431377 . 2 524,624 0,566 -chrXV 430188 431377 HC_gene_8487_tx_4 8 - 430188 431377 . 1 1190 0 -chrXV 430188 431596 HC_gene_8487_tx_5 4 - 430188 431596 . 1 1409 0 -chrXV 430188 431704 HC_gene_8487_tx_6 70 - 430188 431704 . 1 1517 0 -chrXV 430188 431704 HC_gene_8487_tx_7 1 - 430188 431704 . 2 1076,173 0,1344 -chrXV 432118 433456 HC_gene_8044_tx_1 33 + 432118 433456 . 1 1339 0 -chrXV 432430 433456 HC_gene_8044_tx_2 3 + 432430 433456 . 1 1027 0 -chrXV 432607 433246 LC_gene_8488_tx_1 1 - 432607 433246 . 1 640 0 -chrXV 433356 435581 HC_gene_8489_tx_1 1 - 433356 435581 . 1 2226 0 -chrXV 433356 436486 HC_gene_8489_tx_3 3 - 433356 436486 . 1 3131 0 -chrXV 433443 435581 HC_gene_8489_tx_2 4 - 433443 435581 . 1 2139 0 -chrXV 433443 436486 HC_gene_8489_tx_4 3 - 433443 436486 . 1 3044 0 -chrXV 435887 436574 HC_gene_8045_tx_1 2 + 435887 436574 . 1 688 0 -chrXV 436879 437198 HC_gene_8490_tx_1 1 - 436879 437198 . 1 320 0 -chrXV 437006 437198 HC_gene_8490_tx_2 1 - 437006 437198 . 1 193 0 -chrXV 437336 438394 MC_gene_8046_tx_1 1 + 437336 438394 . 1 1059 0 -chrXV 438644 438913 MC_gene_8047_tx_1 1 + 438644 438913 . 1 270 0 -chrXV 438847 439875 HC_gene_8491_tx_1 2 - 438847 439875 . 1 1029 0 -chrXV 438847 440294 HC_gene_8491_tx_2 15 - 438847 440294 . 1 1448 0 -chrXV 438847 441191 HC_gene_8491_tx_3 9 - 438847 441191 . 1 2345 0 -chrXV 439551 440294 HC_gene_8491_tx_4 1 - 439551 440294 . 1 744 0 -chrXV 439551 441191 HC_gene_8491_tx_5 1 - 439551 441191 . 1 1641 0 -chrXV 440140 441191 HC_gene_8491_tx_6 5 - 440140 441191 . 1 1052 0 -chrXV 440244 440910 HC_gene_8491_tx_8 2 - 440244 440910 . 1 667 0 -chrXV 440244 441191 HC_gene_8491_tx_7 2 - 440244 441191 . 1 948 0 -chrXV 440582 441136 LC_gene_8048_tx_1 1 + 440582 441136 . 1 555 0 -chrXV 441312 442766 HC_gene_8049_tx_1 1 + 441312 442766 . 1 1455 0 -chrXV 441405 442766 HC_gene_8049_tx_2 90 + 441405 442766 . 1 1362 0 -chrXV 441405 442766 HC_gene_8049_tx_3 1 + 441405 442766 . 2 107,1017 0,345 -chrXV 441405 442766 HC_gene_8049_tx_4 1 + 441405 442766 . 2 139,1185 0,177 -chrXV 441405 442766 HC_gene_8049_tx_5 1 + 441405 442766 . 2 518,170 0,1192 -chrXV 441666 442766 HC_gene_8049_tx_6 38 + 441666 442766 . 1 1101 0 -chrXV 441666 442766 HC_gene_8049_tx_7 1 + 441666 442766 . 2 256,530 0,571 -chrXV 442646 443079 HC_gene_8492_tx_1 2 - 442646 443079 . 1 434 0 -chrXV 442646 443250 HC_gene_8492_tx_2 9 - 442646 443250 . 1 605 0 -chrXV 442646 443575 HC_gene_8492_tx_3 26 - 442646 443575 . 1 930 0 -chrXV 442646 443713 HC_gene_8492_tx_4 6 - 442646 443713 . 1 1068 0 -chrXV 443460 443935 LC_gene_8050_tx_1 1 + 443460 443935 . 1 476 0 -chrXV 444137 444628 HC_gene_8051_tx_1 18 + 444137 444628 . 1 492 0 -chrXV 444145 444628 HC_gene_8051_tx_2 1 + 444145 444628 . 1 484 0 -chrXV 444663 445969 HC_gene_8052_tx_1 3002 + 444663 445969 . 1 1307 0 -chrXV 444663 446077 HC_gene_8052_tx_2 12 + 444663 446077 . 1 1415 0 -chrXV 444977 445969 HC_gene_8052_tx_3 840 + 444977 445969 . 1 993 0 -chrXV 445070 445969 HC_gene_8052_tx_4 514 + 445070 445969 . 1 900 0 -chrXV 445241 445969 HC_gene_8052_tx_5 82 + 445241 445969 . 1 729 0 -chrXV 445353 445969 HC_gene_8052_tx_6 1424 + 445353 445969 . 1 617 0 -chrXV 445353 447068 HC_gene_8053_tx_1 1 + 445353 447068 . 1 1716 0 -chrXV 445994 446788 HC_gene_8493_tx_1 15 - 445994 446788 . 1 795 0 -chrXV 446873 448318 HC_gene_8494_tx_1 1 - 446873 448318 . 1 1446 0 -chrXV 447092 448318 HC_gene_8494_tx_2 1 - 447092 448318 . 1 1227 0 -chrXV 447197 448899 HC_gene_8054_tx_1 93 + 447197 448899 . 1 1703 0 -chrXV 447197 448899 HC_gene_8054_tx_2 1 + 447197 448899 . 2 1519,82 0,1621 -chrXV 447197 448899 HC_gene_8054_tx_3 1 + 447197 448899 . 3 654,362,279 0,961,1424 -chrXV 447197 448899 HC_gene_8054_tx_4 1 + 447197 448899 . 2 666,781 0,922 -chrXV 447555 448899 HC_gene_8054_tx_5 15 + 447555 448899 . 1 1345 0 -chrXV 448153 448899 HC_gene_8054_tx_6 19 + 448153 448899 . 1 747 0 -chrXV 448297 448899 HC_gene_8054_tx_7 21 + 448297 448899 . 1 603 0 -chrXV 448467 448899 HC_gene_8054_tx_8 20 + 448467 448899 . 1 433 0 -chrXV 448502 448778 LC_gene_8495_tx_1 1 - 448502 448778 . 1 277 0 -chrXV 448795 449835 MC_gene_8496_tx_1 1 - 448795 449835 . 1 1041 0 -chrXV 449224 451498 HC_gene_8055_tx_1 1 + 449224 451498 . 1 2275 0 -chrXV 449320 451498 HC_gene_8055_tx_2 10 + 449320 451498 . 1 2179 0 -chrXV 449320 451498 HC_gene_8055_tx_3 1 + 449320 451498 . 2 579,1217 0,962 -chrXV 449320 451602 HC_gene_8055_tx_4 3 + 449320 451602 . 1 2283 0 -chrXV 449320 451705 HC_gene_8055_tx_5 4 + 449320 451705 . 1 2386 0 -chrXV 449671 451498 HC_gene_8055_tx_6 3 + 449671 451498 . 1 1828 0 -chrXV 450590 451498 HC_gene_8055_tx_7 4 + 450590 451498 . 1 909 0 -chrXV 450590 451602 HC_gene_8055_tx_8 2 + 450590 451602 . 1 1013 0 -chrXV 450590 451705 HC_gene_8055_tx_9 2 + 450590 451705 . 1 1116 0 -chrXV 451650 452192 HC_gene_8497_tx_1 12 - 451650 452192 . 1 543 0 -chrXV 451650 452523 HC_gene_8497_tx_2 15 - 451650 452523 . 1 874 0 -chrXV 451650 452925 HC_gene_8497_tx_4 8 - 451650 452925 . 1 1276 0 -chrXV 451650 453105 HC_gene_8497_tx_5 3 - 451650 453105 . 1 1456 0 -chrXV 451650 453259 HC_gene_8497_tx_6 2 - 451650 453259 . 1 1610 0 -chrXV 451650 453504 HC_gene_8497_tx_7 42 - 451650 453504 . 1 1855 0 -chrXV 451768 452192 HC_gene_8497_tx_11 2 - 451768 452192 . 1 425 0 -chrXV 451768 452523 HC_gene_8497_tx_3 1 - 451768 452523 . 1 756 0 -chrXV 451768 452925 HC_gene_8497_tx_8 1 - 451768 452925 . 1 1158 0 -chrXV 451768 453259 HC_gene_8497_tx_9 1 - 451768 453259 . 1 1492 0 -chrXV 451768 453504 HC_gene_8497_tx_10 8 - 451768 453504 . 1 1737 0 -chrXV 453667 454956 LC_gene_8498_tx_1 1 - 453667 454956 . 1 1290 0 -chrXV 453690 455921 HC_gene_8056_tx_1 20 + 453690 455921 . 1 2232 0 -chrXV 453690 455921 HC_gene_8056_tx_2 1 + 453690 455921 . 2 2087,95 0,2137 -chrXV 454125 455921 HC_gene_8056_tx_3 1 + 454125 455921 . 1 1797 0 -chrXV 455838 457881 HC_gene_8499_tx_1 2 - 455838 457881 . 1 2044 0 -chrXV 455838 457965 HC_gene_8499_tx_2 10 - 455838 457965 . 1 2128 0 -chrXV 458165 460049 MC_gene_8057_tx_1 1 + 458165 460049 . 1 1885 0 -chrXV 458737 458970 HC_gene_8500_tx_1 7 - 458737 458970 . 1 234 0 -chrXV 458737 460641 HC_gene_8500_tx_2 1 - 458737 460641 . 1 1905 0 -chrXV 458737 461385 HC_gene_8500_tx_3 5 - 458737 461385 . 1 2649 0 -chrXV 458737 461746 HC_gene_8500_tx_4 2 - 458737 461746 . 1 3010 0 -chrXV 459262 460641 HC_gene_8500_tx_7 1 - 459262 460641 . 1 1380 0 -chrXV 459262 461385 HC_gene_8500_tx_5 6 - 459262 461385 . 1 2124 0 -chrXV 459262 461746 HC_gene_8500_tx_6 3 - 459262 461746 . 1 2485 0 -chrXV 462200 463394 LC_gene_8501_tx_1 1 - 462200 463394 . 1 1195 0 -chrXV 463086 463951 MC_gene_8058_tx_1 1 + 463086 463951 . 1 866 0 -chrXV 463840 464185 MC_gene_8502_tx_1 1 - 463840 464185 . 1 346 0 -chrXV 464693 466341 LC_gene_8503_tx_1 1 - 464693 466341 . 1 1649 0 -chrXV 464703 466674 HC_gene_8059_tx_1 8 + 464703 466674 . 1 1972 0 -chrXV 465937 466674 HC_gene_8059_tx_2 4 + 465937 466674 . 1 738 0 -chrXV 466174 466674 HC_gene_8059_tx_3 4 + 466174 466674 . 1 501 0 -chrXV 466459 467622 HC_gene_8504_tx_1 9 - 466459 467622 . 1 1164 0 -chrXV 466459 467622 HC_gene_8504_tx_2 1 - 466459 467622 . 2 682,178 0,986 -chrXV 466567 467622 HC_gene_8504_tx_3 51 - 466567 467622 . 1 1056 0 -chrXV 466567 467622 HC_gene_8504_tx_4 1 - 466567 467622 . 2 433,384 0,672 -chrXV 468179 469307 HC_gene_8060_tx_1 37 + 468179 469307 . 1 1129 0 -chrXV 468179 469307 HC_gene_8060_tx_2 1 + 468179 469307 . 2 354,696 0,433 -chrXV 469284 471658 HC_gene_8505_tx_1 8 - 469284 471658 . 1 2375 0 -chrXV 471860 472750 HC_gene_8061_tx_1 3 + 471860 472750 . 1 891 0 -chrXV 471860 473439 HC_gene_8061_tx_2 11 + 471860 473439 . 1 1580 0 -chrXV 472686 473439 HC_gene_8061_tx_3 246 + 472686 473439 . 1 754 0 -chrXV 472686 473439 HC_gene_8061_tx_4 2 + 472686 473439 . 2 123,525 0,229 -chrXV 472935 473439 HC_gene_8061_tx_5 33 + 472935 473439 . 1 505 0 -chrXV 473095 473439 HC_gene_8061_tx_6 36 + 473095 473439 . 1 345 0 -chrXV 473324 474452 HC_gene_8506_tx_1 44 - 473324 474452 . 1 1129 0 -chrXV 473405 474452 HC_gene_8506_tx_2 17 - 473405 474452 . 1 1048 0 -chrXV 473405 474452 HC_gene_8506_tx_3 1 - 473405 474452 . 2 795,196 0,852 -chrXV 474592 475464 HC_gene_8062_tx_1 2 + 474592 475464 . 1 873 0 -chrXV 476261 476833 HC_gene_8063_tx_1 3 + 476261 476833 . 1 573 0 -chrXV 476261 476967 HC_gene_8063_tx_2 6 + 476261 476967 . 1 707 0 -chrXV 476261 477181 HC_gene_8063_tx_3 1 + 476261 477181 . 1 921 0 -chrXV 476852 479243 HC_gene_8507_tx_1 11 - 476852 479243 . 1 2392 0 -chrXV 476852 479243 HC_gene_8507_tx_2 1 - 476852 479243 . 2 1589,680 0,1712 -chrXV 476852 479243 HC_gene_8507_tx_3 1 - 476852 479243 . 2 1263,150 0,2242 -chrXV 478220 479342 MC_gene_8064_tx_1 1 + 478220 479342 . 1 1123 0 -chrXV 479325 479816 MC_gene_8508_tx_1 1 - 479325 479816 . 1 492 0 -chrXV 479457 481259 HC_gene_8065_tx_1 4 + 479457 481259 . 1 1803 0 -chrXV 479457 481811 HC_gene_8065_tx_2 16 + 479457 481811 . 1 2355 0 -chrXV 479457 481811 HC_gene_8065_tx_3 1 + 479457 481811 . 2 1018,1238 0,1117 -chrXV 480258 481811 HC_gene_8065_tx_4 1 + 480258 481811 . 1 1554 0 -chrXV 480566 481811 HC_gene_8065_tx_5 4 + 480566 481811 . 1 1246 0 -chrXV 481729 483149 LC_gene_8509_tx_1 1 - 481729 483149 . 1 1421 0 -chrXV 481972 483206 HC_gene_8066_tx_1 75 + 481972 483206 . 1 1235 0 -chrXV 481972 483206 HC_gene_8066_tx_2 1 + 481972 483206 . 2 133,920 0,315 -chrXV 481972 483206 HC_gene_8066_tx_3 1 + 481972 483206 . 2 129,1053 0,182 -chrXV 482075 483206 HC_gene_8066_tx_4 5 + 482075 483206 . 1 1132 0 -chrXV 482250 483206 HC_gene_8066_tx_5 20 + 482250 483206 . 1 957 0 -chrXV 482250 483206 HC_gene_8066_tx_6 1 + 482250 483206 . 2 566,300 0,657 -chrXV 482321 483206 HC_gene_8066_tx_7 3 + 482321 483206 . 1 886 0 -chrXV 482373 483206 HC_gene_8066_tx_8 24 + 482373 483206 . 1 834 0 -chrXV 483115 483461 HC_gene_8510_tx_1 37 - 483115 483461 . 1 347 0 -chrXV 483115 484166 HC_gene_8510_tx_2 6 - 483115 484166 . 1 1052 0 -chrXV 483115 485589 HC_gene_8510_tx_3 2 - 483115 485589 . 1 2475 0 -chrXV 483115 485589 HC_gene_8510_tx_4 1 - 483115 485589 . 2 2050,290 0,2185 -chrXV 483115 486427 HC_gene_8510_tx_5 1 - 483115 486427 . 1 3313 0 -chrXV 483115 486427 HC_gene_8510_tx_6 1 - 483115 486427 . 2 756,1938 0,1375 -chrXV 483115 486758 HC_gene_8510_tx_7 1 - 483115 486758 . 1 3644 0 -chrXV 483115 486977 HC_gene_8510_tx_8 13 - 483115 486977 . 1 3863 0 -chrXV 483115 486977 HC_gene_8510_tx_9 1 - 483115 486977 . 2 2800,252 0,3611 -chrXV 487634 489853 HC_gene_8067_tx_1 24 + 487634 489853 . 1 2220 0 -chrXV 487634 489853 HC_gene_8067_tx_2 1 + 487634 489853 . 2 415,1697 0,523 -chrXV 487853 489853 HC_gene_8067_tx_3 6 + 487853 489853 . 1 2001 0 -chrXV 487921 489853 HC_gene_8067_tx_4 3 + 487921 489853 . 1 1933 0 -chrXV 489332 489853 HC_gene_8067_tx_5 10 + 489332 489853 . 1 522 0 -chrXV 489935 490442 HC_gene_8511_tx_1 16 - 489935 490442 . 1 508 0 -chrXV 489935 490525 HC_gene_8511_tx_2 12 - 489935 490525 . 1 591 0 -chrXV 489935 490634 HC_gene_8511_tx_3 2 - 489935 490634 . 1 700 0 -chrXV 489935 490851 HC_gene_8511_tx_9 37 - 489935 490851 . 1 917 0 -chrXV 489991 490590 LC_gene_8068_tx_1 1 + 489991 490590 . 1 600 0 -chrXV 490001 490442 HC_gene_8511_tx_4 39 - 490001 490442 . 1 442 0 -chrXV 490001 490525 HC_gene_8511_tx_5 28 - 490001 490525 . 1 525 0 -chrXV 490001 490634 HC_gene_8511_tx_6 17 - 490001 490634 . 1 634 0 -chrXV 490001 490634 HC_gene_8511_tx_7 1 - 490001 490634 . 2 404,188 0,446 -chrXV 490001 490634 HC_gene_8511_tx_8 1 - 490001 490634 . 2 504,70 0,564 -chrXV 490001 490851 HC_gene_8511_tx_10 171 - 490001 490851 . 1 851 0 -chrXV 490001 490851 HC_gene_8511_tx_11 1 - 490001 490851 . 2 528,108 0,743 -chrXV 490001 490851 HC_gene_8511_tx_12 1 - 490001 490851 . 2 359,435 0,416 -chrXV 490001 490851 HC_gene_8511_tx_13 1 - 490001 490851 . 2 476,297 0,554 -chrXV 491039 491473 HC_gene_8512_tx_1 7 - 491039 491473 . 1 435 0 -chrXV 491039 492646 HC_gene_8512_tx_2 1 - 491039 492646 . 1 1608 0 -chrXV 491039 492967 HC_gene_8512_tx_3 8 - 491039 492967 . 1 1929 0 -chrXV 491039 492967 HC_gene_8512_tx_4 1 - 491039 492967 . 2 586,223 0,1706 -chrXV 491395 493027 MC_gene_8069_tx_1 1 + 491395 493027 . 1 1633 0 -chrXV 493080 494536 HC_gene_8070_tx_1 2 + 493080 494536 . 1 1457 0 -chrXV 493370 494536 HC_gene_8070_tx_2 1 + 493370 494536 . 2 289,798 0,369 -chrXV 493370 494536 HC_gene_8070_tx_3 44 + 493370 494536 . 1 1167 0 -chrXV 493370 494928 HC_gene_8070_tx_4 10 + 493370 494928 . 1 1559 0 -chrXV 493370 494928 HC_gene_8070_tx_5 1 + 493370 494928 . 2 628,796 0,763 -chrXV 493588 494465 MC_gene_8513_tx_1 1 - 493588 494465 . 1 878 0 -chrXV 493686 494536 HC_gene_8070_tx_6 15 + 493686 494536 . 1 851 0 -chrXV 493686 494928 HC_gene_8070_tx_7 1 + 493686 494928 . 1 1243 0 -chrXV 493703 494162 MC_gene_8513_tx_2 1 - 493703 494162 . 1 460 0 -chrXV 494066 494536 HC_gene_8070_tx_8 12 + 494066 494536 . 1 471 0 -chrXV 494066 494928 HC_gene_8070_tx_9 1 + 494066 494928 . 2 299,163 0,700 -chrXV 494066 494928 HC_gene_8070_tx_10 1 + 494066 494928 . 1 863 0 -chrXV 494268 495660 MC_gene_8514_tx_1 1 - 494268 495660 . 1 1393 0 -chrXV 494579 494928 HC_gene_8070_tx_11 4 + 494579 494928 . 1 350 0 -chrXV 494776 494928 HC_gene_8070_tx_12 1 + 494776 494928 . 1 153 0 -chrXV 494916 497102 MC_gene_8515_tx_1 1 - 494916 497102 . 1 2187 0 -chrXV 494929 497170 HC_gene_8071_tx_1 14 + 494929 497170 . 1 2242 0 -chrXV 495392 497170 HC_gene_8071_tx_2 1 + 495392 497170 . 1 1779 0 -chrXV 495519 497170 HC_gene_8071_tx_3 3 + 495519 497170 . 1 1652 0 -chrXV 497431 501031 LC_gene_8516_tx_1 1 - 497431 501031 . 1 3601 0 -chrXV 497432 498897 LC_gene_8072_tx_1 1 + 497432 498897 . 1 1466 0 -chrXV 501410 502482 HC_gene_8517_tx_1 4 - 501410 502482 . 1 1073 0 -chrXV 502696 503546 HC_gene_8073_tx_1 67 + 502696 503546 . 1 851 0 -chrXV 502696 503546 HC_gene_8073_tx_2 1 + 502696 503546 . 2 184,314 0,537 -chrXV 502696 503663 HC_gene_8073_tx_3 2 + 502696 503663 . 1 968 0 -chrXV 502853 503856 HC_gene_8518_tx_1 1 - 502853 503856 . 1 1004 0 -chrXV 502853 503965 HC_gene_8518_tx_2 4 - 502853 503965 . 1 1113 0 -chrXV 502853 504399 HC_gene_8518_tx_3 7 - 502853 504399 . 1 1547 0 -chrXV 502926 503546 HC_gene_8073_tx_4 7 + 502926 503546 . 1 621 0 -chrXV 502926 503663 HC_gene_8073_tx_5 1 + 502926 503663 . 1 738 0 -chrXV 502990 504399 HC_gene_8518_tx_4 2 - 502990 504399 . 1 1410 0 -chrXV 502994 503546 HC_gene_8073_tx_6 9 + 502994 503546 . 1 553 0 -chrXV 503133 504399 HC_gene_8518_tx_5 1 - 503133 504399 . 1 1267 0 -chrXV 503432 503856 HC_gene_8518_tx_6 27 - 503432 503856 . 1 425 0 -chrXV 503432 503965 HC_gene_8518_tx_7 27 - 503432 503965 . 1 534 0 -chrXV 503432 504399 HC_gene_8518_tx_8 174 - 503432 504399 . 1 968 0 -chrXV 503432 504399 HC_gene_8518_tx_9 1 - 503432 504399 . 2 546,261 0,707 -chrXV 504742 505185 HC_gene_8074_tx_1 4 + 504742 505185 . 1 444 0 -chrXV 504808 505420 LC_gene_8519_tx_1 1 - 504808 505420 . 1 613 0 -chrXV 505685 506304 LC_gene_8520_tx_1 1 - 505685 506304 . 1 620 0 -chrXV 505765 506793 HC_gene_8075_tx_1 3 + 505765 506793 . 2 173,455 0,574 -chrXV 505765 506794 HC_gene_8075_tx_2 5 + 505765 506794 . 2 173,456 0,574 -chrXV 505765 506795 HC_gene_8075_tx_3 7 + 505765 506795 . 2 173,457 0,574 -chrXV 505765 506796 HC_gene_8075_tx_4 24 + 505765 506796 . 2 173,458 0,574 -chrXV 505765 506797 HC_gene_8075_tx_5 4 + 505765 506797 . 2 173,459 0,574 -chrXV 505765 506797 HC_gene_8075_tx_6 1 + 505765 506797 . 1 1033 0 -chrXV 505765 506798 HC_gene_8075_tx_7 9 + 505765 506798 . 2 173,460 0,574 -chrXV 505765 506799 HC_gene_8075_tx_8 2 + 505765 506799 . 2 173,461 0,574 -chrXV 505765 506800 HC_gene_8075_tx_9 5 + 505765 506800 . 2 173,462 0,574 -chrXV 505765 506801 HC_gene_8075_tx_10 19 + 505765 506801 . 2 173,463 0,574 -chrXV 505765 506802 HC_gene_8075_tx_11 7 + 505765 506802 . 2 173,464 0,574 -chrXV 505765 506802 HC_gene_8075_tx_12 1 + 505765 506802 . 1 1038 0 -chrXV 505765 506803 HC_gene_8075_tx_13 6 + 505765 506803 . 2 173,465 0,574 -chrXV 505765 506804 HC_gene_8075_tx_14 2 + 505765 506804 . 2 173,466 0,574 -chrXV 505765 506805 HC_gene_8075_tx_15 1 + 505765 506805 . 2 160,467 0,574 -chrXV 505765 506806 HC_gene_8075_tx_16 10 + 505765 506806 . 2 173,468 0,574 -chrXV 505765 506807 HC_gene_8075_tx_17 1 + 505765 506807 . 2 173,469 0,574 -chrXV 505765 506808 HC_gene_8075_tx_18 8 + 505765 506808 . 2 173,470 0,574 -chrXV 505765 506809 HC_gene_8075_tx_19 8 + 505765 506809 . 2 173,471 0,574 -chrXV 505765 506810 HC_gene_8075_tx_20 9 + 505765 506810 . 2 173,472 0,574 -chrXV 505765 506811 HC_gene_8075_tx_21 1 + 505765 506811 . 2 173,473 0,574 -chrXV 505765 506812 HC_gene_8075_tx_22 12 + 505765 506812 . 2 173,474 0,574 -chrXV 505765 506812 HC_gene_8075_tx_23 2 + 505765 506812 . 1 1048 0 -chrXV 505765 506813 HC_gene_8075_tx_24 67 + 505765 506813 . 2 173,475 0,574 -chrXV 505765 506813 HC_gene_8075_tx_25 2 + 505765 506813 . 1 1049 0 -chrXV 505765 506814 HC_gene_8075_tx_26 4 + 505765 506814 . 2 173,476 0,574 -chrXV 505765 506815 HC_gene_8075_tx_27 3 + 505765 506815 . 2 173,477 0,574 -chrXV 505765 506815 HC_gene_8075_tx_28 1 + 505765 506815 . 1 1051 0 -chrXV 505765 506816 HC_gene_8075_tx_29 16 + 505765 506816 . 2 173,478 0,574 -chrXV 505765 506817 HC_gene_8075_tx_30 15 + 505765 506817 . 2 173,479 0,574 -chrXV 505765 506817 HC_gene_8075_tx_31 1 + 505765 506817 . 2 173,433 0,620 -chrXV 505765 506818 HC_gene_8075_tx_32 22 + 505765 506818 . 2 173,480 0,574 -chrXV 505765 506818 HC_gene_8075_tx_33 1 + 505765 506818 . 1 1054 0 -chrXV 505765 506819 HC_gene_8075_tx_34 13 + 505765 506819 . 2 173,481 0,574 -chrXV 505765 506820 HC_gene_8075_tx_35 49 + 505765 506820 . 2 173,482 0,574 -chrXV 505765 506820 HC_gene_8075_tx_36 3 + 505765 506820 . 1 1056 0 -chrXV 505765 506821 HC_gene_8075_tx_37 65 + 505765 506821 . 2 173,483 0,574 -chrXV 505765 506821 HC_gene_8075_tx_38 1 + 505765 506821 . 2 173,469 0,588 -chrXV 505765 506821 HC_gene_8075_tx_39 1 + 505765 506821 . 1 1057 0 -chrXV 505765 506822 HC_gene_8075_tx_40 21 + 505765 506822 . 2 173,484 0,574 -chrXV 505765 506823 HC_gene_8075_tx_41 14 + 505765 506823 . 2 173,485 0,574 -chrXV 505765 506824 HC_gene_8075_tx_42 31 + 505765 506824 . 2 173,486 0,574 -chrXV 505765 506824 HC_gene_8075_tx_43 1 + 505765 506824 . 1 1060 0 -chrXV 505765 506825 HC_gene_8075_tx_44 7 + 505765 506825 . 2 173,487 0,574 -chrXV 505765 506826 HC_gene_8075_tx_45 12 + 505765 506826 . 2 173,488 0,574 -chrXV 505765 506826 HC_gene_8075_tx_46 2 + 505765 506826 . 1 1062 0 -chrXV 505765 506827 HC_gene_8075_tx_47 1 + 505765 506827 . 2 173,489 0,574 -chrXV 505765 506828 HC_gene_8075_tx_48 7 + 505765 506828 . 2 173,490 0,574 -chrXV 505765 506829 HC_gene_8075_tx_49 6 + 505765 506829 . 2 173,491 0,574 -chrXV 505765 506830 HC_gene_8075_tx_50 2 + 505765 506830 . 2 173,492 0,574 -chrXV 505765 506831 HC_gene_8075_tx_51 2 + 505765 506831 . 2 173,493 0,574 -chrXV 505765 506832 HC_gene_8075_tx_52 10 + 505765 506832 . 2 173,494 0,574 -chrXV 505765 506832 HC_gene_8075_tx_53 1 + 505765 506832 . 2 160,494 0,574 -chrXV 505765 506833 HC_gene_8075_tx_54 16 + 505765 506833 . 2 173,495 0,574 -chrXV 505765 506833 HC_gene_8075_tx_55 1 + 505765 506833 . 1 1069 0 -chrXV 505765 506835 HC_gene_8075_tx_56 12 + 505765 506835 . 2 173,497 0,574 -chrXV 505765 506837 HC_gene_8075_tx_57 7 + 505765 506837 . 2 173,499 0,574 -chrXV 505765 506838 HC_gene_8075_tx_58 7 + 505765 506838 . 2 173,500 0,574 -chrXV 505765 506838 HC_gene_8075_tx_59 1 + 505765 506838 . 3 173,348,38 0,574,1036 -chrXV 505765 506839 HC_gene_8075_tx_60 2 + 505765 506839 . 2 173,501 0,574 -chrXV 505765 506840 HC_gene_8075_tx_61 24 + 505765 506840 . 2 173,502 0,574 -chrXV 505765 506840 HC_gene_8075_tx_62 1 + 505765 506840 . 3 173,415,40 0,574,1036 -chrXV 505765 506841 HC_gene_8075_tx_63 36 + 505765 506841 . 2 173,503 0,574 -chrXV 505765 506841 HC_gene_8075_tx_64 1 + 505765 506841 . 1 1077 0 -chrXV 505765 506842 HC_gene_8075_tx_65 1 + 505765 506842 . 2 173,504 0,574 -chrXV 505765 506843 HC_gene_8075_tx_66 10 + 505765 506843 . 2 173,505 0,574 -chrXV 505765 506844 HC_gene_8075_tx_67 30 + 505765 506844 . 2 173,506 0,574 -chrXV 505765 506844 HC_gene_8075_tx_68 3 + 505765 506844 . 1 1080 0 -chrXV 505765 506845 HC_gene_8075_tx_69 26 + 505765 506845 . 2 173,507 0,574 -chrXV 505765 506845 HC_gene_8075_tx_70 1 + 505765 506845 . 2 173,491 0,590 -chrXV 505765 506845 HC_gene_8075_tx_71 1 + 505765 506845 . 2 173,486 0,595 -chrXV 505765 506845 HC_gene_8075_tx_72 2 + 505765 506845 . 1 1081 0 -chrXV 505765 506846 HC_gene_8075_tx_73 2 + 505765 506846 . 2 173,508 0,574 -chrXV 505765 506847 HC_gene_8075_tx_74 2 + 505765 506847 . 2 173,509 0,574 -chrXV 505765 506850 HC_gene_8075_tx_75 24 + 505765 506850 . 2 173,512 0,574 -chrXV 505765 506850 HC_gene_8075_tx_76 1 + 505765 506850 . 1 1086 0 -chrXV 505765 506851 HC_gene_8075_tx_77 10 + 505765 506851 . 2 173,513 0,574 -chrXV 505765 506852 HC_gene_8075_tx_78 57 + 505765 506852 . 2 173,514 0,574 -chrXV 505765 506852 HC_gene_8075_tx_79 1 + 505765 506852 . 2 160,514 0,574 -chrXV 505765 506853 HC_gene_8075_tx_80 23 + 505765 506853 . 2 173,515 0,574 -chrXV 505765 506854 HC_gene_8075_tx_81 60 + 505765 506854 . 2 173,516 0,574 -chrXV 505765 506854 HC_gene_8075_tx_82 2 + 505765 506854 . 1 1090 0 -chrXV 505765 506854 HC_gene_8075_tx_83 1 + 505765 506854 . 2 160,516 0,574 -chrXV 505765 506855 HC_gene_8075_tx_84 2 + 505765 506855 . 2 173,517 0,574 -chrXV 505765 506856 HC_gene_8075_tx_85 11 + 505765 506856 . 2 173,518 0,574 -chrXV 505765 506857 HC_gene_8075_tx_86 60 + 505765 506857 . 2 173,519 0,574 -chrXV 505765 506857 HC_gene_8075_tx_87 1 + 505765 506857 . 1 1093 0 -chrXV 505765 506858 HC_gene_8075_tx_88 60 + 505765 506858 . 2 173,520 0,574 -chrXV 505765 506858 HC_gene_8075_tx_89 3 + 505765 506858 . 1 1094 0 -chrXV 505765 506858 HC_gene_8075_tx_90 1 + 505765 506858 . 3 173,415,54 0,574,1040 -chrXV 505765 506859 HC_gene_8075_tx_91 224 + 505765 506859 . 2 173,521 0,574 -chrXV 505765 506859 HC_gene_8075_tx_92 1 + 505765 506859 . 2 173,500 0,595 -chrXV 505765 506859 HC_gene_8075_tx_93 6 + 505765 506859 . 1 1095 0 -chrXV 505765 506859 HC_gene_8075_tx_94 1 + 505765 506859 . 2 173,502 0,593 -chrXV 505765 506860 HC_gene_8075_tx_95 523 + 505765 506860 . 2 173,522 0,574 -chrXV 505765 506860 HC_gene_8075_tx_96 5 + 505765 506860 . 1 1096 0 -chrXV 505765 506860 HC_gene_8075_tx_97 1 + 505765 506860 . 2 173,514 0,582 -chrXV 505765 506860 HC_gene_8075_tx_98 1 + 505765 506860 . 2 173,513 0,583 -chrXV 505765 506860 HC_gene_8075_tx_99 1 + 505765 506860 . 2 160,522 0,574 -chrXV 505765 506860 HC_gene_8075_tx_100 1 + 505765 506860 . 2 135,516 0,580 -chrXV 505765 506860 HC_gene_8075_tx_101 1 + 505765 506860 . 3 173,265,147 0,574,949 -chrXV 505765 506860 HC_gene_8075_tx_102 1 + 505765 506860 . 2 173,508 0,588 -chrXV 505765 506861 HC_gene_8075_tx_103 255 + 505765 506861 . 2 173,523 0,574 -chrXV 505765 506861 HC_gene_8075_tx_104 2 + 505765 506861 . 2 173,515 0,582 -chrXV 505765 506861 HC_gene_8075_tx_105 1 + 505765 506861 . 3 173,415,61 0,574,1036 -chrXV 505765 506861 HC_gene_8075_tx_106 1 + 505765 506861 . 1 1097 0 -chrXV 505765 506861 HC_gene_8075_tx_107 1 + 505765 506861 . 3 174,338,53 0,580,1044 -chrXV 505765 506861 HC_gene_8075_tx_108 1 + 505765 506861 . 2 173,514 0,583 -chrXV 505765 506862 HC_gene_8075_tx_109 6 + 505765 506862 . 2 173,524 0,574 -chrXV 505765 506863 HC_gene_8075_tx_110 9 + 505765 506863 . 2 173,525 0,574 -chrXV 505765 506864 HC_gene_8075_tx_111 10 + 505765 506864 . 2 173,526 0,574 -chrXV 505765 506865 HC_gene_8075_tx_112 13 + 505765 506865 . 2 173,527 0,574 -chrXV 505765 506866 HC_gene_8075_tx_113 26 + 505765 506866 . 2 173,528 0,574 -chrXV 505765 506867 HC_gene_8075_tx_114 3 + 505765 506867 . 2 173,529 0,574 -chrXV 505765 506869 HC_gene_8075_tx_115 1 + 505765 506869 . 2 173,531 0,574 -chrXV 505765 506873 HC_gene_8075_tx_116 1 + 505765 506873 . 2 173,535 0,574 -chrXV 505765 506878 HC_gene_8075_tx_117 2 + 505765 506878 . 2 173,540 0,574 -chrXV 505765 506879 HC_gene_8075_tx_118 3 + 505765 506879 . 2 173,541 0,574 -chrXV 505765 506881 HC_gene_8075_tx_119 1 + 505765 506881 . 2 173,543 0,574 -chrXV 505765 506887 HC_gene_8075_tx_120 10 + 505765 506887 . 2 173,549 0,574 -chrXV 505765 506888 HC_gene_8075_tx_121 1 + 505765 506888 . 2 173,550 0,574 -chrXV 505765 506889 HC_gene_8075_tx_122 3 + 505765 506889 . 2 173,551 0,574 -chrXV 505765 506891 HC_gene_8075_tx_123 2 + 505765 506891 . 2 173,553 0,574 -chrXV 505765 506893 HC_gene_8075_tx_124 1 + 505765 506893 . 2 173,555 0,574 -chrXV 505765 506895 HC_gene_8075_tx_125 1 + 505765 506895 . 2 160,557 0,574 -chrXV 505765 506896 HC_gene_8075_tx_126 1 + 505765 506896 . 2 173,558 0,574 -chrXV 505902 506798 HC_gene_8075_tx_127 1 + 505902 506798 . 2 36,460 0,437 -chrXV 505902 506811 HC_gene_8075_tx_128 1 + 505902 506811 . 2 36,473 0,437 -chrXV 505902 506821 HC_gene_8075_tx_129 1 + 505902 506821 . 1 920 0 -chrXV 505902 506828 HC_gene_8075_tx_130 1 + 505902 506828 . 2 36,490 0,437 -chrXV 505902 506850 HC_gene_8075_tx_131 1 + 505902 506850 . 2 36,512 0,437 -chrXV 505902 506853 HC_gene_8075_tx_132 1 + 505902 506853 . 2 36,515 0,437 -chrXV 505902 506859 HC_gene_8075_tx_133 2 + 505902 506859 . 2 36,521 0,437 -chrXV 505902 506860 HC_gene_8075_tx_134 6 + 505902 506860 . 2 36,522 0,437 -chrXV 505902 506860 HC_gene_8075_tx_135 1 + 505902 506860 . 1 959 0 -chrXV 505902 506861 HC_gene_8075_tx_136 1 + 505902 506861 . 2 36,523 0,437 -chrXV 506354 506793 HC_gene_8075_tx_137 1 + 506354 506793 . 1 440 0 -chrXV 506354 506794 HC_gene_8075_tx_138 1 + 506354 506794 . 1 441 0 -chrXV 506354 506795 HC_gene_8075_tx_139 1 + 506354 506795 . 1 442 0 -chrXV 506354 506796 HC_gene_8075_tx_140 2 + 506354 506796 . 1 443 0 -chrXV 506354 506800 HC_gene_8075_tx_141 1 + 506354 506800 . 1 447 0 -chrXV 506354 506801 HC_gene_8075_tx_142 3 + 506354 506801 . 1 448 0 -chrXV 506354 506802 HC_gene_8075_tx_143 2 + 506354 506802 . 1 449 0 -chrXV 506354 506803 HC_gene_8075_tx_144 1 + 506354 506803 . 1 450 0 -chrXV 506354 506805 HC_gene_8075_tx_145 1 + 506354 506805 . 1 452 0 -chrXV 506354 506808 HC_gene_8075_tx_146 2 + 506354 506808 . 1 455 0 -chrXV 506354 506809 HC_gene_8075_tx_147 1 + 506354 506809 . 1 456 0 -chrXV 506354 506810 HC_gene_8075_tx_148 2 + 506354 506810 . 1 457 0 -chrXV 506354 506811 HC_gene_8075_tx_149 2 + 506354 506811 . 1 458 0 -chrXV 506354 506813 HC_gene_8075_tx_150 6 + 506354 506813 . 1 460 0 -chrXV 506354 506816 HC_gene_8075_tx_151 1 + 506354 506816 . 1 463 0 -chrXV 506354 506817 HC_gene_8075_tx_152 4 + 506354 506817 . 1 464 0 -chrXV 506354 506818 HC_gene_8075_tx_153 1 + 506354 506818 . 1 465 0 -chrXV 506354 506819 HC_gene_8075_tx_154 1 + 506354 506819 . 1 466 0 -chrXV 506354 506820 HC_gene_8075_tx_155 7 + 506354 506820 . 1 467 0 -chrXV 506354 506821 HC_gene_8075_tx_156 6 + 506354 506821 . 1 468 0 -chrXV 506354 506822 HC_gene_8075_tx_157 6 + 506354 506822 . 1 469 0 -chrXV 506354 506823 HC_gene_8075_tx_158 2 + 506354 506823 . 1 470 0 -chrXV 506354 506824 HC_gene_8075_tx_159 4 + 506354 506824 . 1 471 0 -chrXV 506354 506826 HC_gene_8075_tx_160 1 + 506354 506826 . 1 473 0 -chrXV 506354 506827 HC_gene_8075_tx_161 1 + 506354 506827 . 1 474 0 -chrXV 506354 506832 HC_gene_8075_tx_162 2 + 506354 506832 . 1 479 0 -chrXV 506354 506833 HC_gene_8075_tx_163 2 + 506354 506833 . 1 480 0 -chrXV 506354 506838 HC_gene_8075_tx_164 1 + 506354 506838 . 1 485 0 -chrXV 506354 506840 HC_gene_8075_tx_165 4 + 506354 506840 . 1 487 0 -chrXV 506354 506841 HC_gene_8075_tx_166 9 + 506354 506841 . 1 488 0 -chrXV 506354 506843 HC_gene_8075_tx_167 1 + 506354 506843 . 1 490 0 -chrXV 506354 506844 HC_gene_8075_tx_168 4 + 506354 506844 . 1 491 0 -chrXV 506354 506845 HC_gene_8075_tx_169 2 + 506354 506845 . 1 492 0 -chrXV 506354 506850 HC_gene_8075_tx_170 3 + 506354 506850 . 1 497 0 -chrXV 506354 506851 HC_gene_8075_tx_171 2 + 506354 506851 . 1 498 0 -chrXV 506354 506852 HC_gene_8075_tx_172 6 + 506354 506852 . 1 499 0 -chrXV 506354 506853 HC_gene_8075_tx_173 2 + 506354 506853 . 1 500 0 -chrXV 506354 506854 HC_gene_8075_tx_174 10 + 506354 506854 . 1 501 0 -chrXV 506354 506856 HC_gene_8075_tx_175 2 + 506354 506856 . 1 503 0 -chrXV 506354 506857 HC_gene_8075_tx_176 11 + 506354 506857 . 1 504 0 -chrXV 506354 506858 HC_gene_8075_tx_177 5 + 506354 506858 . 1 505 0 -chrXV 506354 506859 HC_gene_8075_tx_178 28 + 506354 506859 . 1 506 0 -chrXV 506354 506860 HC_gene_8075_tx_179 69 + 506354 506860 . 1 507 0 -chrXV 506354 506861 HC_gene_8075_tx_180 53 + 506354 506861 . 1 508 0 -chrXV 506354 506862 HC_gene_8075_tx_181 2 + 506354 506862 . 1 509 0 -chrXV 506354 506863 HC_gene_8075_tx_182 2 + 506354 506863 . 1 510 0 -chrXV 506354 506865 HC_gene_8075_tx_183 4 + 506354 506865 . 1 512 0 -chrXV 506354 506866 HC_gene_8075_tx_184 3 + 506354 506866 . 1 513 0 -chrXV 506354 506892 HC_gene_8075_tx_185 1 + 506354 506892 . 1 539 0 -chrXV 506748 507226 HC_gene_8521_tx_1 2 - 506748 507226 . 1 479 0 -chrXV 506748 507389 HC_gene_8521_tx_2 2 - 506748 507389 . 1 642 0 -chrXV 506748 507540 HC_gene_8521_tx_3 16 - 506748 507540 . 1 793 0 -chrXV 506870 507226 HC_gene_8521_tx_6 5 - 506870 507226 . 1 357 0 -chrXV 506870 507389 HC_gene_8521_tx_4 9 - 506870 507389 . 1 520 0 -chrXV 506870 507540 HC_gene_8521_tx_5 56 - 506870 507540 . 1 671 0 -chrXV 507047 507976 MC_gene_8076_tx_1 1 + 507047 507976 . 1 930 0 -chrXV 507725 508498 HC_gene_8522_tx_1 1 - 507725 508498 . 1 774 0 -chrXV 507730 509273 MC_gene_8077_tx_1 1 + 507730 509273 . 1 1544 0 -chrXV 507805 508498 HC_gene_8522_tx_2 7 - 507805 508498 . 1 694 0 -chrXV 507805 511238 HC_gene_8523_tx_1 7 - 507805 511238 . 1 3434 0 -chrXV 507805 511238 HC_gene_8523_tx_2 1 - 507805 511238 . 2 2587,609 0,2825 -chrXV 509471 510464 LC_gene_8078_tx_1 1 + 509471 510464 . 1 994 0 -chrXV 511707 513100 HC_gene_8079_tx_1 149 + 511707 513100 . 1 1394 0 -chrXV 511707 513194 HC_gene_8079_tx_2 5 + 511707 513194 . 1 1488 0 -chrXV 512077 513100 HC_gene_8079_tx_3 31 + 512077 513100 . 1 1024 0 -chrXV 512756 513100 HC_gene_8079_tx_4 25 + 512756 513100 . 1 345 0 -chrXV 512756 513194 HC_gene_8079_tx_5 2 + 512756 513194 . 1 439 0 -chrXV 513015 514316 HC_gene_8524_tx_1 1 - 513015 514316 . 1 1302 0 -chrXV 513202 514994 LC_gene_8080_tx_1 1 + 513202 514994 . 1 1793 0 -chrXV 514940 515645 LC_gene_8525_tx_1 1 - 514940 515645 . 1 706 0 -chrXV 515169 516393 HC_gene_8081_tx_1 138 + 515169 516393 . 1 1225 0 -chrXV 515243 516393 HC_gene_8081_tx_2 9 + 515243 516393 . 1 1151 0 -chrXV 515761 516393 HC_gene_8081_tx_3 26 + 515761 516393 . 1 633 0 -chrXV 516359 516667 HC_gene_8526_tx_1 31 - 516359 516667 . 1 309 0 -chrXV 516359 516865 HC_gene_8526_tx_2 288 - 516359 516865 . 1 507 0 -chrXV 516359 517261 HC_gene_8526_tx_5 17 - 516359 517261 . 1 903 0 -chrXV 516359 517423 HC_gene_8526_tx_6 4 - 516359 517423 . 1 1065 0 -chrXV 516430 516865 HC_gene_8526_tx_3 10 - 516430 516865 . 1 436 0 -chrXV 516430 517261 HC_gene_8526_tx_7 3 - 516430 517261 . 1 832 0 -chrXV 516490 516865 HC_gene_8526_tx_4 2 - 516490 516865 . 1 376 0 -chrXV 517452 518923 HC_gene_8082_tx_1 16 + 517452 518923 . 1 1472 0 -chrXV 517452 519020 HC_gene_8082_tx_2 2 + 517452 519020 . 1 1569 0 -chrXV 517625 518923 HC_gene_8082_tx_3 8 + 517625 518923 . 1 1299 0 -chrXV 517625 519046 HC_gene_8082_tx_4 1 + 517625 519046 . 1 1422 0 -chrXV 517625 520081 HC_gene_8082_tx_5 3 + 517625 520081 . 1 2457 0 -chrXV 517625 520081 HC_gene_8082_tx_6 1 + 517625 520081 . 2 1262,1144 0,1313 -chrXV 517958 518547 HC_gene_8082_tx_7 1 + 517958 518547 . 1 590 0 -chrXV 517958 518923 HC_gene_8082_tx_8 1 + 517958 518923 . 1 966 0 -chrXV 518011 518923 HC_gene_8082_tx_9 7 + 518011 518923 . 1 913 0 -chrXV 518164 518923 HC_gene_8082_tx_10 3 + 518164 518923 . 1 760 0 -chrXV 518164 519020 HC_gene_8082_tx_11 1 + 518164 519020 . 1 857 0 -chrXV 519026 520081 HC_gene_8083_tx_1 34 + 519026 520081 . 1 1056 0 -chrXV 519026 520232 HC_gene_8083_tx_2 4 + 519026 520232 . 1 1207 0 -chrXV 519026 520362 HC_gene_8083_tx_3 2 + 519026 520362 . 1 1337 0 -chrXV 519246 520081 HC_gene_8083_tx_4 9 + 519246 520081 . 1 836 0 -chrXV 519246 520232 HC_gene_8083_tx_5 1 + 519246 520232 . 1 987 0 -chrXV 519624 520428 MC_gene_8527_tx_1 1 - 519624 520428 . 1 805 0 -chrXV 521074 522628 HC_gene_8084_tx_1 34 + 521074 522628 . 1 1555 0 -chrXV 521074 522628 HC_gene_8084_tx_2 1 + 521074 522628 . 2 206,1306 0,249 -chrXV 521074 522693 HC_gene_8084_tx_3 8 + 521074 522693 . 1 1620 0 -chrXV 521258 522650 MC_gene_8528_tx_1 1 - 521258 522650 . 1 1393 0 -chrXV 521466 522615 MC_gene_8528_tx_2 1 - 521466 522615 . 1 1150 0 -chrXV 522334 522615 MC_gene_8528_tx_3 1 - 522334 522615 . 1 282 0 -chrXV 522949 524933 HC_gene_8085_tx_1 39 + 522949 524933 . 1 1985 0 -chrXV 522949 525005 HC_gene_8085_tx_2 36 + 522949 525005 . 1 2057 0 -chrXV 522949 525005 HC_gene_8085_tx_3 1 + 522949 525005 . 2 699,243 0,1814 -chrXV 523167 524933 HC_gene_8085_tx_4 2 + 523167 524933 . 1 1767 0 -chrXV 523167 525005 HC_gene_8085_tx_5 2 + 523167 525005 . 1 1839 0 -chrXV 523541 524933 HC_gene_8085_tx_6 1 + 523541 524933 . 1 1393 0 -chrXV 523541 525005 HC_gene_8085_tx_7 5 + 523541 525005 . 1 1465 0 -chrXV 523871 524933 HC_gene_8085_tx_8 11 + 523871 524933 . 1 1063 0 -chrXV 523871 525005 HC_gene_8085_tx_9 12 + 523871 525005 . 1 1135 0 -chrXV 524367 524842 LC_gene_8529_tx_1 1 - 524367 524842 . 1 476 0 -chrXV 525176 526798 HC_gene_8086_tx_1 1 + 525176 526798 . 1 1623 0 -chrXV 525176 527237 HC_gene_8086_tx_2 2 + 525176 527237 . 1 2062 0 -chrXV 527770 528777 HC_gene_8087_tx_1 7 + 527770 528777 . 1 1008 0 -chrXV 527938 528777 HC_gene_8087_tx_2 4 + 527938 528777 . 1 840 0 -chrXV 528772 529313 MC_gene_8530_tx_1 1 - 528772 529313 . 1 542 0 -chrXV 528857 530307 HC_gene_8088_tx_1 22 + 528857 530307 . 1 1451 0 -chrXV 528857 530307 HC_gene_8088_tx_2 1 + 528857 530307 . 2 859,531 0,920 -chrXV 529649 530307 HC_gene_8088_tx_3 5 + 529649 530307 . 1 659 0 -chrXV 529942 530282 LC_gene_8531_tx_1 1 - 529942 530282 . 1 341 0 -chrXV 530396 531280 HC_gene_8089_tx_1 4 + 530396 531280 . 1 885 0 -chrXV 530396 531458 HC_gene_8089_tx_2 1 + 530396 531458 . 1 1063 0 -chrXV 530405 531446 HC_gene_8089_tx_3 1 + 530405 531446 . 1 1042 0 -chrXV 530406 531452 HC_gene_8089_tx_4 1 + 530406 531452 . 1 1047 0 -chrXV 530416 531443 HC_gene_8089_tx_5 1 + 530416 531443 . 1 1028 0 -chrXV 530432 531454 HC_gene_8089_tx_6 1 + 530432 531454 . 1 1023 0 -chrXV 530600 531249 MC_gene_8532_tx_1 1 - 530600 531249 . 1 650 0 -chrXV 530762 531443 HC_gene_8089_tx_7 1 + 530762 531443 . 1 682 0 -chrXV 531435 533845 HC_gene_8090_tx_1 10 + 531435 533845 . 1 2411 0 -chrXV 532264 533845 HC_gene_8090_tx_2 1 + 532264 533845 . 1 1582 0 -chrXV 533957 537039 HC_gene_8091_tx_1 1 + 533957 537039 . 1 3083 0 -chrXV 533957 537138 HC_gene_8091_tx_2 1 + 533957 537138 . 2 1610,1462 0,1720 -chrXV 533957 537138 HC_gene_8091_tx_3 4 + 533957 537138 . 1 3182 0 -chrXV 534116 537039 HC_gene_8091_tx_4 1 + 534116 537039 . 1 2924 0 -chrXV 534116 537138 HC_gene_8091_tx_5 1 + 534116 537138 . 1 3023 0 -chrXV 534116 537138 HC_gene_8091_tx_6 1 + 534116 537138 . 2 550,2109 0,914 -chrXV 534178 537138 HC_gene_8091_tx_7 2 + 534178 537138 . 1 2961 0 -chrXV 534378 537138 HC_gene_8091_tx_8 1 + 534378 537138 . 1 2761 0 -chrXV 535022 537138 HC_gene_8091_tx_9 1 + 535022 537138 . 2 578,1479 0,638 -chrXV 535022 537138 HC_gene_8091_tx_10 1 + 535022 537138 . 1 2117 0 -chrXV 535114 537039 HC_gene_8091_tx_11 1 + 535114 537039 . 1 1926 0 -chrXV 535114 537138 HC_gene_8091_tx_12 2 + 535114 537138 . 1 2025 0 -chrXV 535669 537146 MC_gene_8533_tx_1 1 - 535669 537146 . 1 1478 0 -chrXV 535671 537138 HC_gene_8091_tx_13 2 + 535671 537138 . 1 1468 0 -chrXV 536323 537138 HC_gene_8091_tx_14 5 + 536323 537138 . 1 816 0 -chrXV 537367 538575 HC_gene_8092_tx_1 2 + 537367 538575 . 1 1209 0 -chrXV 537367 538661 HC_gene_8092_tx_2 4 + 537367 538661 . 1 1295 0 -chrXV 537418 538575 HC_gene_8092_tx_3 1 + 537418 538575 . 1 1158 0 -chrXV 538192 538661 HC_gene_8092_tx_4 6 + 538192 538661 . 1 470 0 -chrXV 538290 539517 HC_gene_8534_tx_1 2 - 538290 539517 . 1 1228 0 -chrXV 538564 539315 HC_gene_8534_tx_2 8 - 538564 539315 . 1 752 0 -chrXV 538564 539517 HC_gene_8534_tx_3 56 - 538564 539517 . 1 954 0 -chrXV 538564 539517 HC_gene_8534_tx_4 1 - 538564 539517 . 2 696,133 0,821 -chrXV 538564 539517 HC_gene_8534_tx_5 1 - 538564 539517 . 2 586,313 0,641 -chrXV 539624 541288 MC_gene_8535_tx_1 1 - 539624 541288 . 1 1665 0 -chrXV 541732 543970 HC_gene_8536_tx_1 1 - 541732 543970 . 1 2239 0 -chrXV 542417 544360 HC_gene_8537_tx_1 2 - 542417 544360 . 1 1944 0 -chrXV 544969 546471 HC_gene_8093_tx_1 148 + 544969 546471 . 1 1503 0 -chrXV 544969 546471 HC_gene_8093_tx_2 1 + 544969 546471 . 2 835,624 0,879 -chrXV 544969 546471 HC_gene_8093_tx_3 1 + 544969 546471 . 2 409,965 0,538 -chrXV 544969 546471 HC_gene_8093_tx_4 1 + 544969 546471 . 2 340,638 0,865 -chrXV 544969 546471 HC_gene_8093_tx_5 1 + 544969 546471 . 2 709,668 0,835 -chrXV 544969 546471 HC_gene_8093_tx_6 1 + 544969 546471 . 2 300,443 0,1060 -chrXV 544969 546471 HC_gene_8093_tx_7 1 + 544969 546471 . 2 810,620 0,883 -chrXV 544998 546471 HC_gene_8093_tx_8 1 + 544998 546471 . 2 298,729 0,745 -chrXV 545072 546471 HC_gene_8093_tx_9 10 + 545072 546471 . 1 1400 0 -chrXV 545072 546471 HC_gene_8093_tx_10 1 + 545072 546471 . 2 1303,26 0,1374 -chrXV 545281 546471 HC_gene_8093_tx_11 6 + 545281 546471 . 1 1191 0 -chrXV 545338 546471 HC_gene_8093_tx_12 22 + 545338 546471 . 1 1134 0 -chrXV 545338 546471 HC_gene_8093_tx_13 1 + 545338 546471 . 2 133,686 0,448 -chrXV 545425 546471 HC_gene_8093_tx_14 11 + 545425 546471 . 1 1047 0 -chrXV 545540 546471 HC_gene_8093_tx_15 15 + 545540 546471 . 1 932 0 -chrXV 545806 546471 HC_gene_8093_tx_16 34 + 545806 546471 . 1 666 0 -chrXV 545872 546471 HC_gene_8093_tx_17 20 + 545872 546471 . 1 600 0 -chrXV 545969 546471 HC_gene_8093_tx_18 50 + 545969 546471 . 1 503 0 -chrXV 546697 548740 HC_gene_8094_tx_1 14 + 546697 548740 . 1 2044 0 -chrXV 546697 548740 HC_gene_8094_tx_2 1 + 546697 548740 . 2 86,1624 0,420 -chrXV 546697 548740 HC_gene_8094_tx_3 1 + 546697 548740 . 2 308,1487 0,557 -chrXV 547118 548740 HC_gene_8094_tx_4 3 + 547118 548740 . 1 1623 0 -chrXV 547118 548740 HC_gene_8094_tx_5 1 + 547118 548740 . 2 1205,306 0,1317 -chrXV 547605 548965 HC_gene_8538_tx_1 3 - 547605 548965 . 1 1361 0 -chrXV 547751 548914 HC_gene_8538_tx_2 3 - 547751 548914 . 1 1164 0 -chrXV 547751 548965 HC_gene_8538_tx_3 3 - 547751 548965 . 1 1215 0 -chrXV 547751 549142 HC_gene_8538_tx_4 2 - 547751 549142 . 1 1392 0 -chrXV 547751 550271 HC_gene_8538_tx_5 3 - 547751 550271 . 1 2521 0 -chrXV 548235 548740 HC_gene_8094_tx_6 12 + 548235 548740 . 1 506 0 -chrXV 548448 550611 HC_gene_8538_tx_6 1 - 548448 550611 . 1 2164 0 -chrXV 548458 548965 HC_gene_8538_tx_10 1 - 548458 548965 . 1 508 0 -chrXV 548459 550271 HC_gene_8538_tx_7 1 - 548459 550271 . 1 1813 0 -chrXV 548467 548914 HC_gene_8538_tx_11 1 - 548467 548914 . 1 448 0 -chrXV 548470 550271 HC_gene_8538_tx_8 1 - 548470 550271 . 1 1802 0 -chrXV 548472 549142 HC_gene_8538_tx_17 1 - 548472 549142 . 1 671 0 -chrXV 548475 548914 HC_gene_8538_tx_12 1 - 548475 548914 . 1 440 0 -chrXV 548475 548965 HC_gene_8538_tx_13 1 - 548475 548965 . 1 491 0 -chrXV 548485 548965 HC_gene_8538_tx_14 1 - 548485 548965 . 1 481 0 -chrXV 548551 548914 HC_gene_8538_tx_15 4 - 548551 548914 . 1 364 0 -chrXV 548551 548965 HC_gene_8538_tx_16 5 - 548551 548965 . 1 415 0 -chrXV 548551 549142 HC_gene_8538_tx_18 6 - 548551 549142 . 1 592 0 -chrXV 548551 550271 HC_gene_8538_tx_9 24 - 548551 550271 . 1 1721 0 -chrXV 549083 549745 MC_gene_8095_tx_1 1 + 549083 549745 . 1 663 0 -chrXV 550033 550265 MC_gene_8096_tx_1 1 + 550033 550265 . 1 233 0 -chrXV 550486 552199 HC_gene_8097_tx_1 16 + 550486 552199 . 1 1714 0 -chrXV 550949 552199 HC_gene_8097_tx_2 5 + 550949 552199 . 1 1251 0 -chrXV 551068 552199 HC_gene_8097_tx_3 60 + 551068 552199 . 1 1132 0 -chrXV 551412 552199 HC_gene_8097_tx_4 12 + 551412 552199 . 1 788 0 -chrXV 551412 552199 HC_gene_8097_tx_5 1 + 551412 552199 . 2 574,136 0,652 -chrXV 552111 552422 HC_gene_8539_tx_1 234 - 552111 552422 . 1 312 0 -chrXV 552111 552679 HC_gene_8539_tx_2 854 - 552111 552679 . 1 569 0 -chrXV 552111 552905 HC_gene_8539_tx_3 55 - 552111 552905 . 1 795 0 -chrXV 552111 552905 HC_gene_8539_tx_4 85 - 552111 552905 . 2 555,31 0,764 -chrXV 552558 553179 MC_gene_8098_tx_1 1 + 552558 553179 . 1 622 0 -chrXV 552969 553325 HC_gene_8540_tx_1 1 - 552969 553325 . 1 357 0 -chrXV 552969 553376 HC_gene_8540_tx_2 3 - 552969 553376 . 1 408 0 -chrXV 552969 553533 HC_gene_8540_tx_3 4 - 552969 553533 . 1 565 0 -chrXV 552969 553727 HC_gene_8540_tx_4 1 - 552969 553727 . 2 426,277 0,482 -chrXV 552969 553815 HC_gene_8540_tx_5 2 - 552969 553815 . 1 847 0 -chrXV 552969 554228 HC_gene_8540_tx_8 2 - 552969 554228 . 1 1260 0 -chrXV 552969 554512 HC_gene_8540_tx_9 1 - 552969 554512 . 1 1544 0 -chrXV 552969 554630 HC_gene_8540_tx_10 4 - 552969 554630 . 1 1662 0 -chrXV 552969 554794 HC_gene_8540_tx_11 1 - 552969 554794 . 1 1826 0 -chrXV 553106 553325 HC_gene_8540_tx_25 4 - 553106 553325 . 1 220 0 -chrXV 553106 553376 HC_gene_8540_tx_26 8 - 553106 553376 . 1 271 0 -chrXV 553106 553474 HC_gene_8540_tx_27 8 - 553106 553474 . 1 369 0 -chrXV 553106 553533 HC_gene_8540_tx_28 36 - 553106 553533 . 1 428 0 -chrXV 553106 553727 HC_gene_8540_tx_6 23 - 553106 553727 . 1 622 0 -chrXV 553106 553815 HC_gene_8540_tx_7 11 - 553106 553815 . 1 710 0 -chrXV 553106 554228 HC_gene_8540_tx_12 10 - 553106 554228 . 1 1123 0 -chrXV 553106 554293 HC_gene_8540_tx_13 6 - 553106 554293 . 1 1188 0 -chrXV 553106 554293 HC_gene_8540_tx_14 1 - 553106 554293 . 2 527,132 0,1056 -chrXV 553106 554512 HC_gene_8540_tx_15 9 - 553106 554512 . 1 1407 0 -chrXV 553106 554512 HC_gene_8540_tx_16 1 - 553106 554512 . 2 1108,216 0,1191 -chrXV 553106 554609 HC_gene_8540_tx_17 1 - 553106 554609 . 2 539,883 0,621 -chrXV 553106 554630 HC_gene_8540_tx_18 61 - 553106 554630 . 1 1525 0 -chrXV 553106 554630 HC_gene_8540_tx_19 1 - 553106 554630 . 2 1373,67 0,1458 -chrXV 553106 554630 HC_gene_8540_tx_20 1 - 553106 554630 . 2 683,798 0,727 -chrXV 553106 554630 HC_gene_8540_tx_21 1 - 553106 554630 . 2 1082,49 0,1476 -chrXV 553106 554630 HC_gene_8540_tx_22 1 - 553106 554630 . 2 502,953 0,572 -chrXV 553106 554630 HC_gene_8540_tx_23 1 - 553106 554630 . 2 1388,83 0,1442 -chrXV 553106 554794 HC_gene_8540_tx_24 1 - 553106 554794 . 1 1689 0 -chrXV 553165 553816 MC_gene_8099_tx_1 1 + 553165 553816 . 1 652 0 -chrXV 554743 555256 HC_gene_8541_tx_1 12 - 554743 555256 . 1 514 0 -chrXV 554743 555454 HC_gene_8541_tx_2 16 - 554743 555454 . 1 712 0 -chrXV 554743 556181 HC_gene_8541_tx_3 4 - 554743 556181 . 1 1439 0 -chrXV 554743 556181 HC_gene_8541_tx_4 1 - 554743 556181 . 2 1090,210 0,1229 -chrXV 554743 556297 HC_gene_8541_tx_5 6 - 554743 556297 . 1 1555 0 -chrXV 554743 557046 HC_gene_8541_tx_6 2 - 554743 557046 . 1 2304 0 -chrXV 554743 557046 HC_gene_8541_tx_7 1 - 554743 557046 . 2 1153,642 0,1662 -chrXV 554743 557796 HC_gene_8541_tx_8 1 - 554743 557796 . 1 3054 0 -chrXV 554743 558337 HC_gene_8541_tx_9 1 - 554743 558337 . 1 3595 0 -chrXV 554743 558750 HC_gene_8541_tx_10 6 - 554743 558750 . 1 4008 0 -chrXV 556746 557061 MC_gene_8100_tx_1 1 + 556746 557061 . 1 316 0 -chrXV 558785 559776 HC_gene_8542_tx_1 2 - 558785 559776 . 1 992 0 -chrXV 558890 559348 HC_gene_8542_tx_3 5 - 558890 559348 . 1 459 0 -chrXV 558890 559776 HC_gene_8542_tx_2 54 - 558890 559776 . 1 887 0 -chrXV 559838 560611 HC_gene_8543_tx_1 6 - 559838 560611 . 1 774 0 -chrXV 559838 560701 HC_gene_8543_tx_2 39 - 559838 560701 . 1 864 0 -chrXV 559893 560701 HC_gene_8543_tx_3 15 - 559893 560701 . 1 809 0 -chrXV 559934 564369 HC_gene_8101_tx_1 2 + 559934 564369 . 1 4436 0 -chrXV 560903 564369 HC_gene_8101_tx_2 5 + 560903 564369 . 1 3467 0 -chrXV 561131 564369 HC_gene_8101_tx_3 2 + 561131 564369 . 1 3239 0 -chrXV 562827 564369 HC_gene_8101_tx_4 3 + 562827 564369 . 1 1543 0 -chrXV 564398 565402 HC_gene_8544_tx_1 9 - 564398 565402 . 1 1005 0 -chrXV 564398 565402 HC_gene_8544_tx_2 1 - 564398 565402 . 2 51,912 0,93 -chrXV 564398 565587 HC_gene_8544_tx_3 15 - 564398 565587 . 1 1190 0 -chrXV 564398 566089 HC_gene_8544_tx_4 17 - 564398 566089 . 1 1692 0 -chrXV 564398 566089 HC_gene_8544_tx_5 1 - 564398 566089 . 2 677,852 0,840 -chrXV 564398 566209 HC_gene_8544_tx_6 98 - 564398 566209 . 1 1812 0 -chrXV 564398 566209 HC_gene_8544_tx_7 1 - 564398 566209 . 2 726,993 0,819 -chrXV 564398 566209 HC_gene_8544_tx_8 2 - 564398 566209 . 2 753,1018 0,794 -chrXV 564398 566209 HC_gene_8544_tx_9 1 - 564398 566209 . 2 743,847 0,965 -chrXV 566678 569637 HC_gene_8545_tx_1 5 - 566678 569637 . 1 2960 0 -chrXV 567445 569637 HC_gene_8545_tx_2 1 - 567445 569637 . 1 2193 0 -chrXV 567831 569637 HC_gene_8545_tx_3 1 - 567831 569637 . 1 1807 0 -chrXV 569797 570424 LC_gene_8102_tx_1 1 + 569797 570424 . 1 628 0 -chrXV 569819 570866 HC_gene_8546_tx_1 102 - 569819 570866 . 1 1048 0 -chrXV 570625 571448 MC_gene_8103_tx_1 1 + 570625 571448 . 1 824 0 -chrXV 571077 571792 MC_gene_8103_tx_2 1 + 571077 571792 . 1 716 0 -chrXV 571183 571356 MC_gene_8103_tx_3 1 + 571183 571356 . 1 174 0 -chrXV 571183 572178 MC_gene_8103_tx_4 1 + 571183 572178 . 1 996 0 -chrXV 572125 572712 HC_gene_8547_tx_1 3 - 572125 572712 . 1 588 0 -chrXV 572125 572920 HC_gene_8547_tx_2 39 - 572125 572920 . 1 796 0 -chrXV 572125 572920 HC_gene_8547_tx_3 1 - 572125 572920 . 2 203,386 0,410 -chrXV 573104 574880 HC_gene_8104_tx_1 28 + 573104 574880 . 1 1777 0 -chrXV 573104 574880 HC_gene_8104_tx_2 1 + 573104 574880 . 2 183,1533 0,244 -chrXV 573302 574880 HC_gene_8104_tx_3 3 + 573302 574880 . 1 1579 0 -chrXV 573302 574880 HC_gene_8104_tx_4 1 + 573302 574880 . 2 877,558 0,1021 -chrXV 574369 574782 LC_gene_8548_tx_1 1 - 574369 574782 . 1 414 0 -chrXV 575059 577798 HC_gene_8105_tx_1 158 + 575059 577798 . 1 2740 0 -chrXV 575059 577798 HC_gene_8105_tx_2 1 + 575059 577798 . 2 541,1879 0,861 -chrXV 575059 577798 HC_gene_8105_tx_3 1 + 575059 577798 . 2 1390,1218 0,1522 -chrXV 575059 577798 HC_gene_8105_tx_4 1 + 575059 577798 . 2 1246,1124 0,1616 -chrXV 575059 577798 HC_gene_8105_tx_5 1 + 575059 577798 . 2 1379,1273 0,1467 -chrXV 575059 577798 HC_gene_8105_tx_6 1 + 575059 577798 . 2 1401,1273 0,1467 -chrXV 575059 577798 HC_gene_8105_tx_7 1 + 575059 577798 . 2 719,1809 0,931 -chrXV 575059 577798 HC_gene_8105_tx_8 1 + 575059 577798 . 2 1531,1142 0,1598 -chrXV 575059 577945 HC_gene_8105_tx_9 4 + 575059 577945 . 1 2887 0 -chrXV 575498 577798 HC_gene_8105_tx_10 23 + 575498 577798 . 1 2301 0 -chrXV 576735 577798 HC_gene_8105_tx_11 63 + 576735 577798 . 1 1064 0 -chrXV 576735 577798 HC_gene_8105_tx_12 1 + 576735 577798 . 2 144,818 0,246 -chrXV 576735 577945 HC_gene_8105_tx_13 3 + 576735 577945 . 1 1211 0 -chrXV 577205 577798 HC_gene_8105_tx_14 136 + 577205 577798 . 1 594 0 -chrXV 577205 577945 HC_gene_8105_tx_15 1 + 577205 577945 . 1 741 0 -chrXV 577433 577944 MC_gene_8549_tx_1 1 - 577433 577944 . 1 512 0 -chrXV 578236 578406 HC_gene_8106_tx_1 1 + 578236 578406 . 1 171 0 -chrXV 578459 578619 HC_gene_8107_tx_1 1 + 578459 578619 . 1 161 0 -chrXV 578526 579029 MC_gene_8550_tx_1 1 - 578526 579029 . 1 504 0 -chrXV 579062 580164 MC_gene_8108_tx_1 1 + 579062 580164 . 1 1103 0 -chrXV 579070 579698 HC_gene_8551_tx_1 1 - 579070 579698 . 1 629 0 -chrXV 580154 581631 HC_gene_8109_tx_1 365 + 580154 581631 . 1 1478 0 -chrXV 580288 581631 HC_gene_8109_tx_2 21 + 580288 581631 . 1 1344 0 -chrXV 580713 581631 HC_gene_8109_tx_3 44 + 580713 581631 . 1 919 0 -chrXV 580794 581631 HC_gene_8109_tx_4 46 + 580794 581631 . 1 838 0 -chrXV 580887 581631 HC_gene_8109_tx_5 47 + 580887 581631 . 1 745 0 -chrXV 580978 581631 HC_gene_8109_tx_6 33 + 580978 581631 . 1 654 0 -chrXV 581685 583715 HC_gene_8552_tx_1 4 - 581685 583715 . 1 2031 0 -chrXV 581685 584014 HC_gene_8552_tx_2 10 - 581685 584014 . 1 2330 0 -chrXV 581685 584413 HC_gene_8552_tx_3 2 - 581685 584413 . 1 2729 0 -chrXV 584235 584413 HC_gene_8552_tx_4 3 - 584235 584413 . 1 179 0 -chrXV 584235 584759 HC_gene_8552_tx_5 15 - 584235 584759 . 1 525 0 -chrXV 584235 585176 HC_gene_8552_tx_6 7 - 584235 585176 . 1 942 0 -chrXV 584235 586390 HC_gene_8552_tx_7 17 - 584235 586390 . 1 2156 0 -chrXV 584269 586837 MC_gene_8110_tx_1 1 + 584269 586837 . 1 2569 0 -chrXV 586648 589747 HC_gene_8111_tx_1 2 + 586648 589747 . 1 3100 0 -chrXV 587752 589747 HC_gene_8111_tx_2 1 + 587752 589747 . 2 364,1420 0,576 -chrXV 587936 589747 HC_gene_8111_tx_3 2 + 587936 589747 . 1 1812 0 -chrXV 589405 589747 HC_gene_8111_tx_4 3 + 589405 589747 . 1 343 0 -chrXV 589649 592609 HC_gene_8553_tx_1 8 - 589649 592609 . 1 2961 0 -chrXV 589649 592609 HC_gene_8553_tx_2 1 - 589649 592609 . 2 1702,1173 0,1788 -chrXV 589794 592609 HC_gene_8553_tx_3 1 - 589794 592609 . 1 2816 0 -chrXV 592863 594272 HC_gene_8112_tx_1 159 + 592863 594272 . 1 1410 0 -chrXV 593007 594272 HC_gene_8112_tx_2 26 + 593007 594272 . 1 1266 0 -chrXV 593252 594272 HC_gene_8112_tx_3 12 + 593252 594272 . 1 1021 0 -chrXV 593336 594272 HC_gene_8112_tx_4 21 + 593336 594272 . 1 937 0 -chrXV 593436 594272 HC_gene_8112_tx_5 24 + 593436 594272 . 1 837 0 -chrXV 594217 594405 MC_gene_8554_tx_1 1 - 594217 594405 . 1 189 0 -chrXV 594580 595026 LC_gene_8113_tx_1 1 + 594580 595026 . 1 447 0 -chrXV 594682 595610 MC_gene_8555_tx_1 1 - 594682 595610 . 1 929 0 -chrXV 594801 595619 MC_gene_8555_tx_2 1 - 594801 595619 . 1 819 0 -chrXV 597221 600766 HC_gene_8114_tx_1 1 + 597221 600766 . 2 367,2133 0,1413 -chrXV 597221 600766 HC_gene_8114_tx_2 4 + 597221 600766 . 1 3546 0 -chrXV 600872 602417 HC_gene_8556_tx_1 1 - 600872 602417 . 1 1546 0 -chrXV 601137 602417 HC_gene_8556_tx_2 10 - 601137 602417 . 1 1281 0 -chrXV 601362 602417 HC_gene_8556_tx_3 36 - 601362 602417 . 1 1056 0 -chrXV 601362 602417 HC_gene_8556_tx_4 1 - 601362 602417 . 2 557,414 0,642 -chrXV 602549 605094 HC_gene_8557_tx_1 7 - 602549 605094 . 1 2546 0 -chrXV 602549 605094 HC_gene_8557_tx_2 1 - 602549 605094 . 2 940,1507 0,1039 -chrXV 602549 605094 HC_gene_8557_tx_3 1 - 602549 605094 . 3 973,728,680 0,1015,1866 -chrXV 602710 603173 LC_gene_8115_tx_1 1 + 602710 603173 . 1 464 0 -chrXV 605262 605761 HC_gene_8558_tx_1 35 - 605262 605761 . 1 500 0 -chrXV 605262 605942 HC_gene_8558_tx_2 37 - 605262 605942 . 1 681 0 -chrXV 605262 605999 HC_gene_8558_tx_3 14 - 605262 605999 . 1 738 0 -chrXV 605262 606193 HC_gene_8558_tx_4 201 - 605262 606193 . 1 932 0 -chrXV 606360 608540 LC_gene_8559_tx_1 1 - 606360 608540 . 1 2181 0 -chrXV 606581 608649 HC_gene_8116_tx_1 25 + 606581 608649 . 1 2069 0 -chrXV 606581 608649 HC_gene_8116_tx_2 1 + 606581 608649 . 2 305,1578 0,491 -chrXV 607343 608649 HC_gene_8116_tx_3 3 + 607343 608649 . 1 1307 0 -chrXV 608562 608854 HC_gene_8560_tx_1 38 - 608562 608854 . 1 293 0 -chrXV 608562 608986 HC_gene_8560_tx_2 8 - 608562 608986 . 1 425 0 -chrXV 608562 609220 HC_gene_8560_tx_3 58 - 608562 609220 . 1 659 0 -chrXV 608787 609306 LC_gene_8117_tx_1 1 + 608787 609306 . 1 520 0 -chrXV 609421 610667 HC_gene_8561_tx_1 1 - 609421 610667 . 1 1247 0 -chrXV 609421 611054 HC_gene_8561_tx_5 1 - 609421 611054 . 1 1634 0 -chrXV 609421 611433 HC_gene_8561_tx_6 3 - 609421 611433 . 1 2013 0 -chrXV 609512 611054 HC_gene_8561_tx_7 1 - 609512 611054 . 1 1543 0 -chrXV 609512 611433 HC_gene_8561_tx_8 1 - 609512 611433 . 1 1922 0 -chrXV 609519 610667 HC_gene_8561_tx_2 1 - 609519 610667 . 1 1149 0 -chrXV 609519 611054 HC_gene_8561_tx_9 1 - 609519 611054 . 1 1536 0 -chrXV 609520 611433 HC_gene_8561_tx_10 2 - 609520 611433 . 1 1914 0 -chrXV 609531 610667 HC_gene_8561_tx_3 1 - 609531 610667 . 1 1137 0 -chrXV 609538 611433 HC_gene_8561_tx_11 1 - 609538 611433 . 1 1896 0 -chrXV 609550 611433 HC_gene_8561_tx_12 1 - 609550 611433 . 1 1884 0 -chrXV 609555 610667 HC_gene_8561_tx_4 1 - 609555 610667 . 1 1113 0 -chrXV 611588 611900 LC_gene_8118_tx_1 1 + 611588 611900 . 1 313 0 -chrXV 611971 612598 HC_gene_8119_tx_1 138 + 611971 612598 . 1 628 0 -chrXV 612077 612598 HC_gene_8119_tx_2 7 + 612077 612598 . 1 522 0 -chrXV 612157 612598 HC_gene_8119_tx_3 16 + 612157 612598 . 1 442 0 -chrXV 612488 613074 HC_gene_8562_tx_1 2 - 612488 613074 . 1 587 0 -chrXV 612488 613312 HC_gene_8562_tx_2 3 - 612488 613312 . 1 825 0 -chrXV 612488 613467 HC_gene_8562_tx_3 2 - 612488 613467 . 1 980 0 -chrXV 612488 616950 HC_gene_8562_tx_7 1 - 612488 616950 . 1 4463 0 -chrXV 612576 613467 HC_gene_8562_tx_4 2 - 612576 613467 . 1 892 0 -chrXV 612576 614781 HC_gene_8562_tx_8 1 - 612576 614781 . 1 2206 0 -chrXV 612576 615113 HC_gene_8562_tx_9 1 - 612576 615113 . 1 2538 0 -chrXV 612576 616185 HC_gene_8562_tx_10 1 - 612576 616185 . 1 3610 0 -chrXV 612576 616950 HC_gene_8562_tx_11 2 - 612576 616950 . 1 4375 0 -chrXV 612657 613074 HC_gene_8562_tx_28 17 - 612657 613074 . 1 418 0 -chrXV 612657 613168 HC_gene_8562_tx_29 12 - 612657 613168 . 1 512 0 -chrXV 612657 613312 HC_gene_8562_tx_5 15 - 612657 613312 . 1 656 0 -chrXV 612657 613467 HC_gene_8562_tx_6 10 - 612657 613467 . 1 811 0 -chrXV 612657 614724 HC_gene_8562_tx_12 5 - 612657 614724 . 1 2068 0 -chrXV 612657 614781 HC_gene_8562_tx_13 5 - 612657 614781 . 1 2125 0 -chrXV 612657 615113 HC_gene_8562_tx_14 3 - 612657 615113 . 1 2457 0 -chrXV 612657 615113 HC_gene_8562_tx_15 1 - 612657 615113 . 2 1049,1350 0,1107 -chrXV 612657 615711 HC_gene_8562_tx_16 2 - 612657 615711 . 1 3055 0 -chrXV 612657 616547 HC_gene_8562_tx_17 1 - 612657 616547 . 2 2627,1179 0,2712 -chrXV 612657 616547 HC_gene_8562_tx_18 1 - 612657 616547 . 1 3891 0 -chrXV 612657 616791 HC_gene_8562_tx_19 1 - 612657 616791 . 1 4135 0 -chrXV 612657 616950 HC_gene_8562_tx_20 9 - 612657 616950 . 1 4294 0 -chrXV 612657 616950 HC_gene_8562_tx_21 1 - 612657 616950 . 2 2742,1453 0,2841 -chrXV 612896 613168 HC_gene_8562_tx_30 1 - 612896 613168 . 1 273 0 -chrXV 612897 613168 HC_gene_8562_tx_31 1 - 612897 613168 . 1 272 0 -chrXV 612898 616950 HC_gene_8562_tx_22 1 - 612898 616950 . 1 4053 0 -chrXV 612899 616950 HC_gene_8562_tx_23 1 - 612899 616950 . 1 4052 0 -chrXV 612927 613168 HC_gene_8562_tx_32 1 - 612927 613168 . 1 242 0 -chrXV 612927 614781 HC_gene_8562_tx_24 1 - 612927 614781 . 1 1855 0 -chrXV 612928 613467 HC_gene_8562_tx_34 1 - 612928 613467 . 1 540 0 -chrXV 612929 616791 HC_gene_8562_tx_25 1 - 612929 616791 . 1 3863 0 -chrXV 612932 613467 HC_gene_8562_tx_35 1 - 612932 613467 . 1 536 0 -chrXV 612939 613168 HC_gene_8562_tx_33 1 - 612939 613168 . 1 230 0 -chrXV 612939 613467 HC_gene_8562_tx_36 1 - 612939 613467 . 1 529 0 -chrXV 612939 615113 HC_gene_8562_tx_26 2 - 612939 615113 . 1 2175 0 -chrXV 612939 616547 HC_gene_8562_tx_27 1 - 612939 616547 . 1 3609 0 -chrXV 617134 617341 HC_gene_8563_tx_1 4 - 617134 617341 . 1 208 0 -chrXV 617180 618111 HC_gene_8120_tx_1 1 + 617180 618111 . 1 932 0 -chrXV 617247 617341 HC_gene_8563_tx_2 1 - 617247 617341 . 1 95 0 -chrXV 617247 618330 HC_gene_8563_tx_3 2 - 617247 618330 . 1 1084 0 -chrXV 617247 618453 HC_gene_8563_tx_4 3 - 617247 618453 . 1 1207 0 -chrXV 617247 618876 HC_gene_8563_tx_7 6 - 617247 618876 . 1 1630 0 -chrXV 617351 618330 HC_gene_8563_tx_5 5 - 617351 618330 . 1 980 0 -chrXV 617351 618453 HC_gene_8563_tx_6 8 - 617351 618453 . 1 1103 0 -chrXV 617351 618838 HC_gene_8563_tx_8 1 - 617351 618838 . 1 1488 0 -chrXV 617351 618876 HC_gene_8563_tx_9 25 - 617351 618876 . 1 1526 0 -chrXV 617351 619060 HC_gene_8563_tx_10 1 - 617351 619060 . 1 1710 0 -chrXV 617896 618330 HC_gene_8563_tx_11 1 - 617896 618330 . 1 435 0 -chrXV 617898 618876 HC_gene_8563_tx_12 1 - 617898 618876 . 1 979 0 -chrXV 618034 618330 HC_gene_8563_tx_15 8 - 618034 618330 . 1 297 0 -chrXV 618034 618453 HC_gene_8563_tx_16 13 - 618034 618453 . 1 420 0 -chrXV 618034 618876 HC_gene_8563_tx_13 51 - 618034 618876 . 1 843 0 -chrXV 618034 619060 HC_gene_8563_tx_14 4 - 618034 619060 . 1 1027 0 -chrXV 618307 618876 HC_gene_8563_tx_17 5 - 618307 618876 . 1 570 0 -chrXV 618307 618889 HC_gene_8563_tx_18 1 - 618307 618889 . 1 583 0 -chrXV 618690 624490 HC_gene_8121_tx_1 1 + 618690 624490 . 1 5801 0 -chrXV 618830 624490 HC_gene_8121_tx_2 1 + 618830 624490 . 2 4592,1020 0,4641 -chrXV 619671 623062 HC_gene_8121_tx_3 1 + 619671 623062 . 1 3392 0 -chrXV 619671 623064 HC_gene_8121_tx_4 1 + 619671 623064 . 1 3394 0 -chrXV 619671 623071 HC_gene_8121_tx_5 1 + 619671 623071 . 1 3401 0 -chrXV 619671 623073 HC_gene_8121_tx_6 1 + 619671 623073 . 1 3403 0 -chrXV 619671 623076 HC_gene_8121_tx_7 1 + 619671 623076 . 1 3406 0 -chrXV 619671 623506 HC_gene_8121_tx_8 3 + 619671 623506 . 1 3836 0 -chrXV 619671 624257 HC_gene_8121_tx_9 1 + 619671 624257 . 1 4587 0 -chrXV 619671 624490 HC_gene_8121_tx_10 85 + 619671 624490 . 1 4820 0 -chrXV 619671 624490 HC_gene_8121_tx_11 1 + 619671 624490 . 2 1622,3121 0,1699 -chrXV 619671 624490 HC_gene_8121_tx_12 1 + 619671 624490 . 2 1655,3083 0,1737 -chrXV 619671 624490 HC_gene_8121_tx_13 1 + 619671 624490 . 2 3828,917 0,3903 -chrXV 619671 624490 HC_gene_8121_tx_14 1 + 619671 624490 . 2 1690,3002 0,1818 -chrXV 619671 624490 HC_gene_8121_tx_15 1 + 619671 624490 . 2 3683,1028 0,3792 -chrXV 619671 624490 HC_gene_8121_tx_16 1 + 619671 624490 . 2 2535,1861 0,2959 -chrXV 619671 624490 HC_gene_8121_tx_17 1 + 619671 624490 . 2 3651,1107 0,3713 -chrXV 619671 624490 HC_gene_8121_tx_18 1 + 619671 624490 . 3 512,1776,2014 0,593,2806 -chrXV 619671 624490 HC_gene_8121_tx_19 1 + 619671 624490 . 2 3789,917 0,3903 -chrXV 619671 624490 HC_gene_8121_tx_20 1 + 619671 624490 . 2 1646,3061 0,1759 -chrXV 619685 623506 HC_gene_8121_tx_21 1 + 619685 623506 . 1 3822 0 -chrXV 619849 623506 HC_gene_8121_tx_22 2 + 619849 623506 . 1 3658 0 -chrXV 619849 624490 HC_gene_8121_tx_23 10 + 619849 624490 . 1 4642 0 -chrXV 619849 624490 HC_gene_8121_tx_24 1 + 619849 624490 . 2 1147,2980 0,1662 -chrXV 619983 624490 HC_gene_8121_tx_25 16 + 619983 624490 . 1 4508 0 -chrXV 619983 624490 HC_gene_8121_tx_26 1 + 619983 624490 . 3 756,2483,1107 0,864,3401 -chrXV 620072 623506 HC_gene_8121_tx_27 1 + 620072 623506 . 2 1611,1729 0,1706 -chrXV 620072 623506 HC_gene_8121_tx_28 1 + 620072 623506 . 1 3435 0 -chrXV 620072 624490 HC_gene_8121_tx_29 15 + 620072 624490 . 1 4419 0 -chrXV 620072 624490 HC_gene_8121_tx_30 1 + 620072 624490 . 2 1934,594 0,3825 -chrXV 620072 624490 HC_gene_8121_tx_31 1 + 620072 624490 . 2 3458,882 0,3537 -chrXV 620549 624490 HC_gene_8121_tx_32 19 + 620549 624490 . 1 3942 0 -chrXV 620549 624490 HC_gene_8121_tx_33 1 + 620549 624490 . 2 1312,2509 0,1433 -chrXV 620549 624490 HC_gene_8121_tx_34 1 + 620549 624490 . 2 475,3152 0,790 -chrXV 620549 624490 HC_gene_8121_tx_35 1 + 620549 624490 . 2 195,3083 0,859 -chrXV 620852 623506 HC_gene_8121_tx_105 1 + 620852 623506 . 1 2655 0 -chrXV 620852 624490 HC_gene_8121_tx_36 24 + 620852 624490 . 1 3639 0 -chrXV 620852 624490 HC_gene_8121_tx_37 1 + 620852 624490 . 2 2543,1041 0,2598 -chrXV 621053 623066 HC_gene_8121_tx_106 1 + 621053 623066 . 1 2014 0 -chrXV 621053 623072 HC_gene_8121_tx_107 1 + 621053 623072 . 1 2020 0 -chrXV 621053 624490 HC_gene_8121_tx_38 23 + 621053 624490 . 1 3438 0 -chrXV 621053 624490 HC_gene_8121_tx_39 1 + 621053 624490 . 2 1998,1366 0,2072 -chrXV 621053 624490 HC_gene_8121_tx_40 1 + 621053 624490 . 2 1322,1883 0,1555 -chrXV 621053 624490 HC_gene_8121_tx_41 1 + 621053 624490 . 2 1053,2232 0,1206 -chrXV 621053 624490 HC_gene_8121_tx_42 1 + 621053 624490 . 2 1517,1356 0,2082 -chrXV 621402 623062 HC_gene_8121_tx_108 1 + 621402 623062 . 1 1661 0 -chrXV 621402 623506 HC_gene_8121_tx_109 3 + 621402 623506 . 1 2105 0 -chrXV 621402 623506 HC_gene_8121_tx_110 1 + 621402 623506 . 2 1133,899 0,1206 -chrXV 621402 624490 HC_gene_8121_tx_43 17 + 621402 624490 . 1 3089 0 -chrXV 621402 624490 HC_gene_8121_tx_44 1 + 621402 624490 . 2 753,1889 0,1200 -chrXV 621402 624490 HC_gene_8121_tx_45 1 + 621402 624490 . 2 396,1820 0,1269 -chrXV 621482 623506 HC_gene_8121_tx_111 1 + 621482 623506 . 1 2025 0 -chrXV 621482 624490 HC_gene_8121_tx_46 38 + 621482 624490 . 1 3009 0 -chrXV 621482 624490 HC_gene_8121_tx_47 1 + 621482 624490 . 2 1609,868 0,2141 -chrXV 621482 624490 HC_gene_8121_tx_48 1 + 621482 624490 . 2 2152,762 0,2247 -chrXV 621482 624490 HC_gene_8121_tx_49 1 + 621482 624490 . 2 1541,1356 0,1653 -chrXV 621737 623506 HC_gene_8121_tx_112 6 + 621737 623506 . 1 1770 0 -chrXV 621737 624257 HC_gene_8121_tx_50 1 + 621737 624257 . 1 2521 0 -chrXV 621737 624490 HC_gene_8121_tx_51 52 + 621737 624490 . 1 2754 0 -chrXV 621737 624490 HC_gene_8121_tx_52 1 + 621737 624490 . 2 1673,585 0,2169 -chrXV 621737 624490 HC_gene_8121_tx_53 1 + 621737 624490 . 2 2411,163 0,2591 -chrXV 621737 624490 HC_gene_8121_tx_54 1 + 621737 624490 . 2 1785,762 0,1992 -chrXV 621737 624490 HC_gene_8121_tx_55 1 + 621737 624490 . 2 720,527 0,2227 -chrXV 621737 624490 HC_gene_8121_tx_56 1 + 621737 624490 . 2 420,2292 0,462 -chrXV 621883 623067 HC_gene_8121_tx_117 1 + 621883 623067 . 1 1185 0 -chrXV 621883 623071 HC_gene_8121_tx_118 1 + 621883 623071 . 1 1189 0 -chrXV 621883 623506 HC_gene_8121_tx_113 6 + 621883 623506 . 1 1624 0 -chrXV 621883 623506 HC_gene_8121_tx_114 1 + 621883 623506 . 2 265,1030 0,594 -chrXV 621883 624490 HC_gene_8121_tx_57 58 + 621883 624490 . 1 2608 0 -chrXV 621883 624490 HC_gene_8121_tx_58 1 + 621883 624490 . 2 2023,527 0,2081 -chrXV 621883 624490 HC_gene_8121_tx_59 1 + 621883 624490 . 3 507,346,1041 0,1060,1567 -chrXV 622106 623082 HC_gene_8121_tx_119 1 + 622106 623082 . 1 977 0 -chrXV 622106 623506 HC_gene_8121_tx_115 4 + 622106 623506 . 1 1401 0 -chrXV 622106 624490 HC_gene_8121_tx_60 74 + 622106 624490 . 1 2385 0 -chrXV 622106 624490 HC_gene_8121_tx_61 1 + 622106 624490 . 2 390,1801 0,584 -chrXV 622106 624490 HC_gene_8121_tx_62 1 + 622106 624490 . 2 1271,1019 0,1366 -chrXV 622106 624490 HC_gene_8121_tx_63 1 + 622106 624490 . 2 1239,1032 0,1353 -chrXV 622106 624490 HC_gene_8121_tx_64 1 + 622106 624490 . 2 1248,1024 0,1361 -chrXV 622106 624490 HC_gene_8121_tx_65 1 + 622106 624490 . 2 1239,1076 0,1309 -chrXV 622106 624490 HC_gene_8121_tx_66 2 + 622106 624490 . 2 1316,1007 0,1378 -chrXV 622106 624490 HC_gene_8121_tx_67 1 + 622106 624490 . 2 1239,1049 0,1336 -chrXV 622106 624490 HC_gene_8121_tx_68 1 + 622106 624490 . 2 1248,1020 0,1365 -chrXV 622341 623062 HC_gene_8121_tx_120 1 + 622341 623062 . 1 722 0 -chrXV 622341 623071 HC_gene_8121_tx_121 1 + 622341 623071 . 1 731 0 -chrXV 622341 623506 HC_gene_8121_tx_116 1 + 622341 623506 . 1 1166 0 -chrXV 622341 624490 HC_gene_8121_tx_69 75 + 622341 624490 . 1 2150 0 -chrXV 622341 624490 HC_gene_8121_tx_70 1 + 622341 624490 . 2 1380,585 0,1565 -chrXV 622341 624490 HC_gene_8121_tx_71 1 + 622341 624490 . 2 1154,948 0,1202 -chrXV 622341 624490 HC_gene_8121_tx_72 1 + 622341 624490 . 2 1022,1041 0,1109 -chrXV 622341 624490 HC_gene_8121_tx_73 1 + 622341 624490 . 2 1081,934 0,1216 -chrXV 622597 623071 HC_gene_8121_tx_122 1 + 622597 623071 . 1 475 0 -chrXV 622597 624490 HC_gene_8121_tx_74 73 + 622597 624490 . 1 1894 0 -chrXV 622597 624490 HC_gene_8121_tx_75 1 + 622597 624490 . 2 455,1049 0,845 -chrXV 622597 624490 HC_gene_8121_tx_76 1 + 622597 624490 . 2 47,1297 0,597 -chrXV 622597 624490 HC_gene_8121_tx_77 1 + 622597 624490 . 2 597,1107 0,787 -chrXV 622597 624490 HC_gene_8121_tx_78 1 + 622597 624490 . 2 1088,739 0,1155 -chrXV 622597 624490 HC_gene_8121_tx_79 1 + 622597 624490 . 2 455,1060 0,834 -chrXV 622597 624490 HC_gene_8121_tx_80 1 + 622597 624490 . 2 276,1117 0,777 -chrXV 622597 624490 HC_gene_8121_tx_81 1 + 622597 624490 . 2 996,834 0,1060 -chrXV 622597 624490 HC_gene_8121_tx_82 1 + 622597 624490 . 2 486,1314 0,580 -chrXV 622597 624729 HC_gene_8121_tx_83 1 + 622597 624729 . 1 2133 0 -chrXV 622726 623062 HC_gene_8121_tx_123 1 + 622726 623062 . 1 337 0 -chrXV 622726 624490 HC_gene_8121_tx_84 73 + 622726 624490 . 1 1765 0 -chrXV 622726 624490 HC_gene_8121_tx_85 1 + 622726 624490 . 2 74,1198 0,567 -chrXV 622726 624490 HC_gene_8121_tx_86 1 + 622726 624490 . 2 138,646 0,1119 -chrXV 622726 624490 HC_gene_8121_tx_87 1 + 622726 624490 . 2 1022,661 0,1104 -chrXV 622843 623062 HC_gene_8121_tx_124 1 + 622843 623062 . 1 220 0 -chrXV 622843 624490 HC_gene_8121_tx_88 101 + 622843 624490 . 1 1648 0 -chrXV 623101 623506 HC_gene_8121_tx_125 11 + 623101 623506 . 1 406 0 -chrXV 623101 624253 HC_gene_8121_tx_89 1 + 623101 624253 . 1 1153 0 -chrXV 623101 624490 HC_gene_8121_tx_90 125 + 623101 624490 . 1 1390 0 -chrXV 623101 624490 HC_gene_8121_tx_91 1 + 623101 624490 . 2 733,488 0,902 -chrXV 623101 624490 HC_gene_8121_tx_92 1 + 623101 624490 . 2 222,429 0,961 -chrXV 623101 624490 HC_gene_8121_tx_93 1 + 623101 624490 . 2 681,325 0,1065 -chrXV 623102 623506 HC_gene_8121_tx_126 1 + 623102 623506 . 1 405 0 -chrXV 623297 623506 HC_gene_8121_tx_127 2 + 623297 623506 . 1 210 0 -chrXV 623297 624257 HC_gene_8121_tx_94 1 + 623297 624257 . 1 961 0 -chrXV 623297 624490 HC_gene_8121_tx_95 105 + 623297 624490 . 1 1194 0 -chrXV 623297 624490 HC_gene_8121_tx_96 1 + 623297 624490 . 2 471,585 0,609 -chrXV 623297 624490 HC_gene_8121_tx_97 1 + 623297 624490 . 2 113,325 0,869 -chrXV 623461 624490 HC_gene_8121_tx_98 178 + 623461 624490 . 1 1030 0 -chrXV 623461 624729 HC_gene_8121_tx_99 1 + 623461 624729 . 1 1269 0 -chrXV 623536 624490 HC_gene_8121_tx_100 134 + 623536 624490 . 1 955 0 -chrXV 623646 624257 HC_gene_8121_tx_128 1 + 623646 624257 . 1 612 0 -chrXV 623646 624490 HC_gene_8121_tx_101 137 + 623646 624490 . 1 845 0 -chrXV 623727 624490 HC_gene_8121_tx_102 93 + 623727 624490 . 1 764 0 -chrXV 623727 624490 HC_gene_8121_tx_103 1 + 623727 624490 . 2 338,305 0,459 -chrXV 623812 624490 HC_gene_8121_tx_104 252 + 623812 624490 . 1 679 0 -chrXV 624678 626645 HC_gene_8122_tx_1 11 + 624678 626645 . 1 1968 0 -chrXV 624678 626645 HC_gene_8122_tx_2 1 + 624678 626645 . 2 950,862 0,1106 -chrXV 624678 626645 HC_gene_8122_tx_3 1 + 624678 626645 . 2 991,866 0,1102 -chrXV 624678 626645 HC_gene_8122_tx_4 1 + 624678 626645 . 2 299,1279 0,689 -chrXV 626540 627367 HC_gene_8564_tx_1 8 - 626540 627367 . 1 828 0 -chrXV 626540 627437 HC_gene_8564_tx_2 3 - 626540 627437 . 1 898 0 -chrXV 626540 627437 HC_gene_8564_tx_3 1 - 626540 627437 . 2 83,742 0,156 -chrXV 626540 627492 HC_gene_8564_tx_4 4 - 626540 627492 . 1 953 0 -chrXV 626540 627588 HC_gene_8564_tx_5 5 - 626540 627588 . 1 1049 0 -chrXV 626540 628002 HC_gene_8564_tx_6 39 - 626540 628002 . 1 1463 0 -chrXV 628106 630618 HC_gene_8565_tx_1 3 - 628106 630618 . 1 2513 0 -chrXV 628201 630618 HC_gene_8565_tx_2 4 - 628201 630618 . 1 2418 0 -chrXV 628440 629263 LC_gene_8123_tx_1 1 + 628440 629263 . 1 824 0 -chrXV 630647 631007 LC_gene_8124_tx_1 1 + 630647 631007 . 1 361 0 -chrXV 630827 631161 HC_gene_8566_tx_1 29 - 630827 631161 . 1 335 0 -chrXV 630827 631301 HC_gene_8566_tx_2 5 - 630827 631301 . 1 475 0 -chrXV 630827 631360 HC_gene_8566_tx_3 14 - 630827 631360 . 1 534 0 -chrXV 630827 631526 HC_gene_8566_tx_5 12 - 630827 631526 . 1 700 0 -chrXV 630827 631651 HC_gene_8566_tx_6 8 - 630827 631651 . 1 825 0 -chrXV 630827 631704 HC_gene_8566_tx_7 6 - 630827 631704 . 1 878 0 -chrXV 630827 631817 HC_gene_8566_tx_8 179 - 630827 631817 . 1 991 0 -chrXV 630910 631161 HC_gene_8566_tx_13 29 - 630910 631161 . 1 252 0 -chrXV 630910 631360 HC_gene_8566_tx_4 15 - 630910 631360 . 1 451 0 -chrXV 630910 631526 HC_gene_8566_tx_9 18 - 630910 631526 . 1 617 0 -chrXV 630910 631651 HC_gene_8566_tx_10 11 - 630910 631651 . 1 742 0 -chrXV 630910 631704 HC_gene_8566_tx_11 10 - 630910 631704 . 1 795 0 -chrXV 630910 631817 HC_gene_8566_tx_12 142 - 630910 631817 . 1 908 0 -chrXV 631360 632144 LC_gene_8125_tx_1 1 + 631360 632144 . 1 785 0 -chrXV 632148 633163 HC_gene_8126_tx_1 46 + 632148 633163 . 1 1016 0 -chrXV 632148 633270 HC_gene_8126_tx_2 3 + 632148 633270 . 1 1123 0 -chrXV 632291 633163 HC_gene_8126_tx_3 5 + 632291 633163 . 1 873 0 -chrXV 632291 633270 HC_gene_8126_tx_4 1 + 632291 633270 . 1 980 0 -chrXV 632467 633611 HC_gene_8567_tx_1 2 - 632467 633611 . 1 1145 0 -chrXV 632509 633163 HC_gene_8126_tx_5 13 + 632509 633163 . 1 655 0 -chrXV 632509 633270 HC_gene_8126_tx_6 1 + 632509 633270 . 1 762 0 -chrXV 632695 633611 HC_gene_8567_tx_2 2 - 632695 633611 . 1 917 0 -chrXV 633035 633487 HC_gene_8567_tx_3 21 - 633035 633487 . 1 453 0 -chrXV 633035 633611 HC_gene_8567_tx_4 187 - 633035 633611 . 1 577 0 -chrXV 633155 633611 HC_gene_8567_tx_5 24 - 633155 633611 . 1 457 0 -chrXV 633782 636843 HC_gene_8127_tx_1 5 + 633782 636843 . 1 3062 0 -chrXV 633782 636843 HC_gene_8127_tx_2 1 + 633782 636843 . 2 2274,689 0,2373 -chrXV 634026 636767 LC_gene_8568_tx_1 1 - 634026 636767 . 1 2742 0 -chrXV 636349 636843 HC_gene_8127_tx_3 9 + 636349 636843 . 1 495 0 -chrXV 636817 637947 HC_gene_8569_tx_1 2 - 636817 637947 . 1 1131 0 -chrXV 636817 638385 HC_gene_8569_tx_2 2 - 636817 638385 . 1 1569 0 -chrXV 636817 638623 HC_gene_8569_tx_3 3 - 636817 638623 . 1 1807 0 -chrXV 637025 638851 MC_gene_8128_tx_1 1 + 637025 638851 . 1 1827 0 -chrXV 638699 642181 HC_gene_8570_tx_1 1 - 638699 642181 . 1 3483 0 -chrXV 639161 639433 MC_gene_8129_tx_1 1 + 639161 639433 . 1 273 0 -chrXV 639406 642181 HC_gene_8571_tx_1 4 - 639406 642181 . 1 2776 0 -chrXV 639406 642181 HC_gene_8571_tx_2 1 - 639406 642181 . 2 1300,1265 0,1511 -chrXV 639406 642500 HC_gene_8571_tx_3 1 - 639406 642500 . 1 3095 0 -chrXV 640153 640700 MC_gene_8130_tx_1 1 + 640153 640700 . 1 548 0 -chrXV 642703 643383 HC_gene_8131_tx_1 114 + 642703 643383 . 1 681 0 -chrXV 642703 643556 HC_gene_8131_tx_2 5 + 642703 643556 . 1 854 0 -chrXV 642988 643383 HC_gene_8131_tx_3 9 + 642988 643383 . 1 396 0 -chrXV 643176 643772 HC_gene_8572_tx_1 20 - 643176 643772 . 1 597 0 -chrXV 643176 643893 HC_gene_8572_tx_2 19 - 643176 643893 . 1 718 0 -chrXV 643176 644125 HC_gene_8572_tx_3 26 - 643176 644125 . 1 950 0 -chrXV 643176 644353 HC_gene_8572_tx_4 123 - 643176 644353 . 1 1178 0 -chrXV 644523 646994 HC_gene_8132_tx_1 1 + 644523 646994 . 1 2472 0 -chrXV 644523 647007 HC_gene_8132_tx_2 1 + 644523 647007 . 2 1231,1177 0,1308 -chrXV 644523 647026 HC_gene_8132_tx_3 1 + 644523 647026 . 1 2504 0 -chrXV 644523 647029 HC_gene_8132_tx_4 1 + 644523 647029 . 1 2507 0 -chrXV 644523 647036 HC_gene_8132_tx_5 1 + 644523 647036 . 1 2514 0 -chrXV 644523 647041 HC_gene_8132_tx_6 1 + 644523 647041 . 1 2519 0 -chrXV 644523 647042 HC_gene_8132_tx_7 2 + 644523 647042 . 1 2520 0 -chrXV 644523 647045 HC_gene_8132_tx_8 1 + 644523 647045 . 2 1418,1024 0,1499 -chrXV 644523 647048 HC_gene_8132_tx_9 1 + 644523 647048 . 1 2526 0 -chrXV 644523 647050 HC_gene_8132_tx_10 1 + 644523 647050 . 1 2528 0 -chrXV 644523 647052 HC_gene_8132_tx_11 1 + 644523 647052 . 1 2530 0 -chrXV 644523 647053 HC_gene_8132_tx_12 1 + 644523 647053 . 1 2531 0 -chrXV 644523 647054 HC_gene_8132_tx_13 1 + 644523 647054 . 1 2532 0 -chrXV 644523 647057 HC_gene_8132_tx_14 1 + 644523 647057 . 1 2535 0 -chrXV 644523 647061 HC_gene_8132_tx_15 1 + 644523 647061 . 1 2539 0 -chrXV 644523 647064 HC_gene_8132_tx_16 1 + 644523 647064 . 1 2542 0 -chrXV 644523 647065 HC_gene_8132_tx_17 3 + 644523 647065 . 1 2543 0 -chrXV 644523 647070 HC_gene_8132_tx_18 1 + 644523 647070 . 1 2548 0 -chrXV 644523 647158 HC_gene_8132_tx_19 2 + 644523 647158 . 1 2636 0 -chrXV 644796 646989 HC_gene_8132_tx_20 1 + 644796 646989 . 1 2194 0 -chrXV 644796 647045 HC_gene_8132_tx_21 1 + 644796 647045 . 1 2250 0 -chrXV 644932 647040 HC_gene_8132_tx_22 1 + 644932 647040 . 1 2109 0 -chrXV 644932 647041 HC_gene_8132_tx_23 2 + 644932 647041 . 1 2110 0 -chrXV 646981 648541 HC_gene_8573_tx_1 24 - 646981 648541 . 1 1561 0 -chrXV 648626 649020 HC_gene_8574_tx_1 5 - 648626 649020 . 1 395 0 -chrXV 648652 649020 HC_gene_8574_tx_2 5 - 648652 649020 . 1 369 0 -chrXV 648657 649020 HC_gene_8574_tx_3 6 - 648657 649020 . 1 364 0 -chrXV 648658 649020 HC_gene_8574_tx_4 8 - 648658 649020 . 1 363 0 -chrXV 648661 649020 HC_gene_8574_tx_5 5 - 648661 649020 . 1 360 0 -chrXV 648662 649020 HC_gene_8574_tx_6 15 - 648662 649020 . 1 359 0 -chrXV 648664 649020 HC_gene_8574_tx_7 34 - 648664 649020 . 1 357 0 -chrXV 648667 649020 HC_gene_8574_tx_8 14 - 648667 649020 . 1 354 0 -chrXV 648668 649020 HC_gene_8574_tx_9 12 - 648668 649020 . 1 353 0 -chrXV 648669 649020 HC_gene_8574_tx_10 16 - 648669 649020 . 1 352 0 -chrXV 648670 649020 HC_gene_8574_tx_11 30 - 648670 649020 . 1 351 0 -chrXV 648671 649020 HC_gene_8574_tx_12 1393 - 648671 649020 . 1 350 0 -chrXV 648672 649020 HC_gene_8574_tx_13 18 - 648672 649020 . 1 349 0 -chrXV 648673 649020 HC_gene_8574_tx_14 11 - 648673 649020 . 1 348 0 -chrXV 648674 649020 HC_gene_8574_tx_15 296 - 648674 649020 . 1 347 0 -chrXV 648675 649020 HC_gene_8574_tx_16 70 - 648675 649020 . 1 346 0 -chrXV 648676 649020 HC_gene_8574_tx_17 66 - 648676 649020 . 1 345 0 -chrXV 648677 649020 HC_gene_8574_tx_18 126 - 648677 649020 . 1 344 0 -chrXV 648678 649020 HC_gene_8574_tx_19 42 - 648678 649020 . 1 343 0 -chrXV 648679 649020 HC_gene_8574_tx_20 142 - 648679 649020 . 1 342 0 -chrXV 648680 649020 HC_gene_8574_tx_21 419 - 648680 649020 . 1 341 0 -chrXV 648681 649020 HC_gene_8574_tx_22 106 - 648681 649020 . 1 340 0 -chrXV 648682 649020 HC_gene_8574_tx_23 564 - 648682 649020 . 1 339 0 -chrXV 648683 649020 HC_gene_8574_tx_24 630 - 648683 649020 . 1 338 0 -chrXV 648684 649020 HC_gene_8574_tx_25 102 - 648684 649020 . 1 337 0 -chrXV 648685 649020 HC_gene_8574_tx_26 84 - 648685 649020 . 1 336 0 -chrXV 648686 649020 HC_gene_8574_tx_27 81 - 648686 649020 . 1 335 0 -chrXV 648687 649020 HC_gene_8574_tx_28 94 - 648687 649020 . 1 334 0 -chrXV 648688 649020 HC_gene_8574_tx_29 15 - 648688 649020 . 1 333 0 -chrXV 648689 649020 HC_gene_8574_tx_30 219 - 648689 649020 . 1 332 0 -chrXV 648690 649020 HC_gene_8574_tx_31 158 - 648690 649020 . 1 331 0 -chrXV 648691 649020 HC_gene_8574_tx_32 78 - 648691 649020 . 1 330 0 -chrXV 648692 649020 HC_gene_8574_tx_33 99 - 648692 649020 . 1 329 0 -chrXV 648693 649020 HC_gene_8574_tx_34 50 - 648693 649020 . 1 328 0 -chrXV 648694 649020 HC_gene_8574_tx_35 21 - 648694 649020 . 1 327 0 -chrXV 648695 649020 HC_gene_8574_tx_36 11 - 648695 649020 . 1 326 0 -chrXV 648696 649020 HC_gene_8574_tx_37 37 - 648696 649020 . 1 325 0 -chrXV 648697 649020 HC_gene_8574_tx_38 33 - 648697 649020 . 1 324 0 -chrXV 648698 649020 HC_gene_8574_tx_39 46 - 648698 649020 . 1 323 0 -chrXV 648699 649020 HC_gene_8574_tx_40 15 - 648699 649020 . 1 322 0 -chrXV 649274 651842 HC_gene_8133_tx_1 1 + 649274 651842 . 2 1247,1224 0,1345 -chrXV 649274 651842 HC_gene_8133_tx_2 76 + 649274 651842 . 1 2569 0 -chrXV 649274 651842 HC_gene_8133_tx_3 2 + 649274 651842 . 2 1341,1179 0,1390 -chrXV 649274 651842 HC_gene_8133_tx_4 1 + 649274 651842 . 2 1349,1143 0,1426 -chrXV 649274 651842 HC_gene_8133_tx_5 1 + 649274 651842 . 2 1307,1179 0,1390 -chrXV 649274 651842 HC_gene_8133_tx_6 1 + 649274 651842 . 2 861,782 0,1787 -chrXV 649274 651842 HC_gene_8133_tx_7 1 + 649274 651842 . 3 236,1198,921 0,382,1648 -chrXV 649274 651842 HC_gene_8133_tx_8 1 + 649274 651842 . 2 2052,455 0,2114 -chrXV 649274 651842 HC_gene_8133_tx_9 1 + 649274 651842 . 2 1341,1164 0,1405 -chrXV 649274 651842 HC_gene_8133_tx_10 1 + 649274 651842 . 2 1270,1162 0,1407 -chrXV 649274 651842 HC_gene_8133_tx_11 1 + 649274 651842 . 2 1341,1106 0,1463 -chrXV 649274 651842 HC_gene_8133_tx_12 1 + 649274 651842 . 2 1311,1126 0,1443 -chrXV 649274 651842 HC_gene_8133_tx_13 2 + 649274 651842 . 2 1341,1177 0,1392 -chrXV 649274 651842 HC_gene_8133_tx_14 1 + 649274 651842 . 2 1327,1122 0,1447 -chrXV 649274 651842 HC_gene_8133_tx_15 1 + 649274 651842 . 2 1224,1199 0,1370 -chrXV 649274 651931 HC_gene_8133_tx_16 2 + 649274 651931 . 1 2658 0 -chrXV 649460 651842 HC_gene_8133_tx_17 12 + 649460 651842 . 1 2383 0 -chrXV 649618 651842 HC_gene_8133_tx_18 17 + 649618 651842 . 1 2225 0 -chrXV 649618 651842 HC_gene_8133_tx_19 1 + 649618 651842 . 2 1559,604 0,1621 -chrXV 649776 651842 HC_gene_8133_tx_20 13 + 649776 651842 . 1 2067 0 -chrXV 650050 651842 HC_gene_8133_tx_21 24 + 650050 651842 . 1 1793 0 -chrXV 650404 651842 HC_gene_8133_tx_22 1 + 650404 651842 . 2 817,552 0,887 -chrXV 650404 651842 HC_gene_8133_tx_23 10 + 650404 651842 . 1 1439 0 -chrXV 650548 651842 HC_gene_8133_tx_24 17 + 650548 651842 . 1 1295 0 -chrXV 651823 653953 HC_gene_8575_tx_1 27 - 651823 653953 . 1 2131 0 -chrXV 651823 653953 HC_gene_8575_tx_2 1 - 651823 653953 . 2 781,1231 0,900 -chrXV 654165 656257 HC_gene_8134_tx_1 1 + 654165 656257 . 2 1131,910 0,1183 -chrXV 657157 658491 MC_gene_8576_tx_1 1 - 657157 658491 . 1 1335 0 -chrXV 657236 658437 HC_gene_8135_tx_1 33 + 657236 658437 . 1 1202 0 -chrXV 657550 658437 HC_gene_8135_tx_2 9 + 657550 658437 . 1 888 0 -chrXV 657901 658437 HC_gene_8135_tx_3 5 + 657901 658437 . 1 537 0 -chrXV 658632 659719 HC_gene_8136_tx_1 37 + 658632 659719 . 1 1088 0 -chrXV 658632 659790 HC_gene_8136_tx_2 1 + 658632 659790 . 1 1159 0 -chrXV 658981 659719 HC_gene_8136_tx_3 3 + 658981 659719 . 1 739 0 -chrXV 659317 659719 HC_gene_8136_tx_4 11 + 659317 659719 . 1 403 0 -chrXV 659317 659790 HC_gene_8136_tx_5 1 + 659317 659790 . 1 474 0 -chrXV 659651 660123 HC_gene_8577_tx_1 19 - 659651 660123 . 1 473 0 -chrXV 659651 660239 HC_gene_8577_tx_2 7 - 659651 660239 . 1 589 0 -chrXV 659651 660297 HC_gene_8577_tx_3 23 - 659651 660297 . 1 647 0 -chrXV 659651 660489 HC_gene_8577_tx_4 7 - 659651 660489 . 1 839 0 -chrXV 659651 661757 HC_gene_8577_tx_5 52 - 659651 661757 . 1 2107 0 -chrXV 659651 661757 HC_gene_8577_tx_6 1 - 659651 661757 . 2 945,1101 0,1006 -chrXV 659651 661757 HC_gene_8577_tx_7 1 - 659651 661757 . 2 1760,219 0,1888 -chrXV 659651 661757 HC_gene_8577_tx_8 1 - 659651 661757 . 2 1572,479 0,1628 -chrXV 659651 661953 HC_gene_8577_tx_9 1 - 659651 661953 . 1 2303 0 -chrXV 659651 662012 HC_gene_8577_tx_10 2 - 659651 662012 . 1 2362 0 -chrXV 659651 662151 HC_gene_8577_tx_11 5 - 659651 662151 . 1 2501 0 -chrXV 662289 663652 HC_gene_8137_tx_1 10 + 662289 663652 . 1 1364 0 -chrXV 662289 663715 HC_gene_8137_tx_2 59 + 662289 663715 . 1 1427 0 -chrXV 662307 662726 MC_gene_8578_tx_1 1 - 662307 662726 . 1 420 0 -chrXV 662519 663715 HC_gene_8137_tx_3 5 + 662519 663715 . 1 1197 0 -chrXV 662701 663715 HC_gene_8137_tx_4 7 + 662701 663715 . 1 1015 0 -chrXV 662802 663715 HC_gene_8137_tx_5 7 + 662802 663715 . 1 914 0 -chrXV 662982 663652 HC_gene_8137_tx_6 4 + 662982 663652 . 1 671 0 -chrXV 662982 663715 HC_gene_8137_tx_7 19 + 662982 663715 . 1 734 0 -chrXV 663636 664524 HC_gene_8579_tx_1 1 - 663636 664524 . 1 889 0 -chrXV 664029 664524 HC_gene_8579_tx_2 3 - 664029 664524 . 1 496 0 -chrXV 664671 665587 MC_gene_8138_tx_1 1 + 664671 665587 . 1 917 0 -chrXV 664956 665535 HC_gene_8580_tx_1 13 - 664956 665535 . 1 580 0 -chrXV 665635 666640 MC_gene_8581_tx_1 1 - 665635 666640 . 1 1006 0 -chrXV 665662 667224 MC_gene_8582_tx_1 1 - 665662 667224 . 1 1563 0 -chrXV 666496 667603 LC_gene_8139_tx_1 1 + 666496 667603 . 1 1108 0 -chrXV 667519 668386 HC_gene_8583_tx_1 3 - 667519 668386 . 1 868 0 -chrXV 667519 668494 HC_gene_8583_tx_2 1 - 667519 668494 . 1 976 0 -chrXV 667519 670593 HC_gene_8583_tx_3 4 - 667519 670593 . 1 3075 0 -chrXV 667870 668424 HC_gene_8140_tx_1 3 + 667870 668424 . 1 555 0 -chrXV 667870 668970 HC_gene_8140_tx_2 2 + 667870 668970 . 1 1101 0 -chrXV 667870 669418 HC_gene_8140_tx_3 1 + 667870 669418 . 1 1549 0 -chrXV 667870 670633 HC_gene_8140_tx_4 1 + 667870 670633 . 2 1430,1258 0,1506 -chrXV 671327 672441 HC_gene_8584_tx_1 11 - 671327 672441 . 1 1115 0 -chrXV 671327 672441 HC_gene_8584_tx_2 1 - 671327 672441 . 2 378,211 0,904 -chrXV 671579 672441 HC_gene_8584_tx_3 29 - 671579 672441 . 1 863 0 -chrXV 672615 673730 MC_gene_8141_tx_1 1 + 672615 673730 . 1 1116 0 -chrXV 673188 673723 MC_gene_8585_tx_1 1 - 673188 673723 . 1 536 0 -chrXV 674099 675184 HC_gene_8586_tx_1 3 - 674099 675184 . 1 1086 0 -chrXV 674099 675677 HC_gene_8586_tx_4 6 - 674099 675677 . 1 1579 0 -chrXV 674099 675677 HC_gene_8586_tx_5 1 - 674099 675677 . 2 1095,210 0,1369 -chrXV 674183 675184 HC_gene_8586_tx_2 3 - 674183 675184 . 1 1002 0 -chrXV 674183 675677 HC_gene_8586_tx_6 6 - 674183 675677 . 1 1495 0 -chrXV 674299 675184 HC_gene_8586_tx_3 1 - 674299 675184 . 1 886 0 -chrXV 675436 675910 HC_gene_8142_tx_1 1 + 675436 675910 . 1 475 0 -chrXV 675446 675910 HC_gene_8142_tx_2 22 + 675446 675910 . 1 465 0 -chrXV 675457 675910 HC_gene_8142_tx_3 1 + 675457 675910 . 1 454 0 -chrXV 675462 675910 HC_gene_8142_tx_4 1 + 675462 675910 . 1 449 0 -chrXV 675733 677845 LC_gene_8587_tx_1 1 - 675733 677845 . 2 1608,400 0,1713 -chrXV 677090 677973 HC_gene_8143_tx_1 7 + 677090 677973 . 1 884 0 -chrXV 677852 678390 HC_gene_8588_tx_1 20 - 677852 678390 . 1 539 0 -chrXV 678121 678321 HC_gene_8588_tx_2 91 - 678121 678321 . 1 201 0 -chrXV 678121 678390 HC_gene_8588_tx_3 3632 - 678121 678390 . 1 270 0 -chrXV 678121 678814 HC_gene_8588_tx_4 72 - 678121 678814 . 1 694 0 -chrXV 678121 678814 HC_gene_8588_tx_5 62 - 678121 678814 . 2 259,24 0,670 -chrXV 679124 680435 LC_gene_8589_tx_1 1 - 679124 680435 . 1 1312 0 -chrXV 679307 680642 HC_gene_8144_tx_1 202 + 679307 680642 . 1 1336 0 -chrXV 679307 681407 HC_gene_8144_tx_2 4 + 679307 681407 . 1 2101 0 -chrXV 679672 680642 HC_gene_8144_tx_3 37 + 679672 680642 . 1 971 0 -chrXV 679831 680642 HC_gene_8144_tx_4 34 + 679831 680642 . 1 812 0 -chrXV 680027 680642 HC_gene_8144_tx_5 81 + 680027 680642 . 1 616 0 -chrXV 680234 680642 HC_gene_8144_tx_6 51 + 680234 680642 . 1 409 0 -chrXV 680567 681011 HC_gene_8590_tx_1 2 - 680567 681011 . 1 445 0 -chrXV 681112 681407 HC_gene_8144_tx_7 11 + 681112 681407 . 1 296 0 -chrXV 681402 681866 HC_gene_8591_tx_1 13 - 681402 681866 . 1 465 0 -chrXV 681402 682165 HC_gene_8591_tx_2 154 - 681402 682165 . 1 764 0 -chrXV 681486 682177 HC_gene_8145_tx_1 11 + 681486 682177 . 1 692 0 -chrXV 681486 682177 HC_gene_8145_tx_2 1 + 681486 682177 . 2 27,573 0,119 -chrXV 681486 682228 HC_gene_8145_tx_3 1 + 681486 682228 . 1 743 0 -chrXV 682429 683719 HC_gene_8146_tx_1 2 + 682429 683719 . 1 1291 0 -chrXV 682798 683616 MC_gene_8592_tx_1 1 - 682798 683616 . 1 819 0 -chrXV 683030 683654 HC_gene_8146_tx_2 2 + 683030 683654 . 1 625 0 -chrXV 683960 685464 HC_gene_8147_tx_1 173 + 683960 685464 . 1 1505 0 -chrXV 683960 685464 HC_gene_8147_tx_2 1 + 683960 685464 . 2 1398,62 0,1443 -chrXV 683960 685464 HC_gene_8147_tx_3 1 + 683960 685464 . 2 1001,438 0,1067 -chrXV 683960 685565 HC_gene_8147_tx_4 12 + 683960 685565 . 1 1606 0 -chrXV 683960 685565 HC_gene_8147_tx_5 1 + 683960 685565 . 2 296,1078 0,528 -chrXV 684210 685464 HC_gene_8147_tx_6 27 + 684210 685464 . 1 1255 0 -chrXV 684699 685464 HC_gene_8147_tx_7 30 + 684699 685464 . 1 766 0 -chrXV 684699 685565 HC_gene_8147_tx_8 2 + 684699 685565 . 1 867 0 -chrXV 684846 685464 HC_gene_8147_tx_9 41 + 684846 685464 . 1 619 0 -chrXV 684846 685464 HC_gene_8147_tx_10 1 + 684846 685464 . 3 169,174,173 0,220,446 -chrXV 684846 685565 HC_gene_8147_tx_11 4 + 684846 685565 . 1 720 0 -chrXV 684877 685474 LC_gene_8593_tx_1 1 - 684877 685474 . 1 598 0 -chrXV 685681 689311 HC_gene_8148_tx_1 8 + 685681 689311 . 1 3631 0 -chrXV 689155 689386 MC_gene_8594_tx_1 1 - 689155 689386 . 1 232 0 -chrXV 689589 690154 HC_gene_8149_tx_1 92 + 689589 690154 . 1 566 0 -chrXV 689589 690362 HC_gene_8149_tx_2 6 + 689589 690362 . 1 774 0 -chrXV 689589 692190 HC_gene_8149_tx_3 2 + 689589 692190 . 1 2602 0 -chrXV 689852 690154 HC_gene_8149_tx_4 8 + 689852 690154 . 1 303 0 -chrXV 690086 690349 HC_gene_8595_tx_1 11 - 690086 690349 . 1 264 0 -chrXV 690743 692190 HC_gene_8596_tx_1 1 - 690743 692190 . 1 1448 0 -chrXV 694438 698018 HC_gene_8150_tx_1 1 + 694438 698018 . 1 3581 0 -chrXV 694973 698188 HC_gene_8150_tx_2 1 + 694973 698188 . 2 275,2848 0,368 -chrXV 695874 698188 HC_gene_8150_tx_3 1 + 695874 698188 . 1 2315 0 -chrXV 696603 697508 HC_gene_8150_tx_4 1 + 696603 697508 . 1 906 0 -chrXV 696603 697520 HC_gene_8150_tx_5 1 + 696603 697520 . 1 918 0 -chrXV 696603 697531 HC_gene_8150_tx_6 1 + 696603 697531 . 1 929 0 -chrXV 696603 697536 HC_gene_8150_tx_7 1 + 696603 697536 . 1 934 0 -chrXV 696694 697440 HC_gene_8150_tx_8 1 + 696694 697440 . 1 747 0 -chrXV 696694 697509 HC_gene_8150_tx_9 1 + 696694 697509 . 1 816 0 -chrXV 696694 697519 HC_gene_8150_tx_10 1 + 696694 697519 . 1 826 0 -chrXV 696694 697536 HC_gene_8150_tx_11 1 + 696694 697536 . 1 843 0 -chrXV 696694 698188 HC_gene_8150_tx_12 2 + 696694 698188 . 1 1495 0 -chrXV 698005 701685 HC_gene_8597_tx_1 1 - 698005 701685 . 1 3681 0 -chrXV 701095 701685 HC_gene_8597_tx_2 4 - 701095 701685 . 1 591 0 -chrXV 701095 702202 HC_gene_8597_tx_3 1 - 701095 702202 . 1 1108 0 -chrXV 701220 701612 LC_gene_8151_tx_1 1 + 701220 701612 . 1 393 0 -chrXV 701782 702948 HC_gene_8152_tx_1 6 + 701782 702948 . 1 1167 0 -chrXV 703558 705472 MC_gene_8598_tx_1 1 - 703558 705472 . 1 1915 0 -chrXV 703659 709772 MC_gene_8598_tx_2 1 - 703659 709772 . 1 6114 0 -chrXV 703669 704440 MC_gene_8153_tx_1 1 + 703669 704440 . 1 772 0 -chrXV 703896 704902 MC_gene_8598_tx_4 1 - 703896 704902 . 1 1007 0 -chrXV 704104 709760 MC_gene_8598_tx_3 1 - 704104 709760 . 1 5657 0 -chrXV 709249 710122 MC_gene_8154_tx_1 1 + 709249 710122 . 1 874 0 -chrXV 710389 711268 HC_gene_8155_tx_1 1 + 710389 711268 . 1 880 0 -chrXV 710389 711332 HC_gene_8155_tx_2 1 + 710389 711332 . 1 944 0 -chrXV 710389 711339 HC_gene_8155_tx_3 1 + 710389 711339 . 1 951 0 -chrXV 710389 711691 HC_gene_8155_tx_4 12 + 710389 711691 . 1 1303 0 -chrXV 710389 711691 HC_gene_8155_tx_5 1 + 710389 711691 . 2 775,469 0,834 -chrXV 710389 711691 HC_gene_8155_tx_6 1 + 710389 711691 . 2 432,739 0,564 -chrXV 711309 712613 HC_gene_8599_tx_1 1 - 711309 712613 . 1 1305 0 -chrXV 711363 711990 HC_gene_8599_tx_14 9 - 711363 711990 . 1 628 0 -chrXV 711363 712204 HC_gene_8599_tx_2 21 - 711363 712204 . 1 842 0 -chrXV 711363 712399 HC_gene_8599_tx_3 6 - 711363 712399 . 1 1037 0 -chrXV 711363 712460 HC_gene_8599_tx_4 2 - 711363 712460 . 1 1098 0 -chrXV 711363 712613 HC_gene_8599_tx_5 21 - 711363 712613 . 1 1251 0 -chrXV 711363 712613 HC_gene_8599_tx_6 1 - 711363 712613 . 2 215,667 0,584 -chrXV 711363 712613 HC_gene_8599_tx_7 1 - 711363 712613 . 2 1075,116 0,1135 -chrXV 711592 711990 HC_gene_8599_tx_15 19 - 711592 711990 . 1 399 0 -chrXV 711592 712204 HC_gene_8599_tx_16 49 - 711592 712204 . 1 613 0 -chrXV 711592 712204 HC_gene_8599_tx_17 1 - 711592 712204 . 2 140,411 0,202 -chrXV 711592 712399 HC_gene_8599_tx_8 28 - 711592 712399 . 1 808 0 -chrXV 711592 712399 HC_gene_8599_tx_9 1 - 711592 712399 . 2 612,136 0,672 -chrXV 711592 712460 HC_gene_8599_tx_10 7 - 711592 712460 . 1 869 0 -chrXV 711592 712613 HC_gene_8599_tx_11 64 - 711592 712613 . 1 1022 0 -chrXV 711592 712613 HC_gene_8599_tx_12 1 - 711592 712613 . 2 551,361 0,661 -chrXV 711592 712613 HC_gene_8599_tx_13 1 - 711592 712613 . 2 291,667 0,355 -chrXV 712109 712763 HC_gene_8156_tx_1 1 + 712109 712763 . 1 655 0 -chrXV 712795 715558 HC_gene_8157_tx_1 10 + 712795 715558 . 1 2764 0 -chrXV 713440 715558 HC_gene_8157_tx_2 1 + 713440 715558 . 1 2119 0 -chrXV 713732 715558 HC_gene_8157_tx_3 1 + 713732 715558 . 1 1827 0 -chrXV 713984 715558 HC_gene_8157_tx_4 5 + 713984 715558 . 1 1575 0 -chrXV 714512 715558 HC_gene_8157_tx_5 3 + 714512 715558 . 1 1047 0 -chrXV 715374 715913 HC_gene_8600_tx_1 1 - 715374 715913 . 1 540 0 -chrXV 715374 716869 HC_gene_8600_tx_3 7 - 715374 716869 . 1 1496 0 -chrXV 715472 715913 HC_gene_8600_tx_2 7 - 715472 715913 . 1 442 0 -chrXV 715472 716381 HC_gene_8600_tx_7 13 - 715472 716381 . 1 910 0 -chrXV 715472 716869 HC_gene_8600_tx_4 46 - 715472 716869 . 1 1398 0 -chrXV 715472 716869 HC_gene_8600_tx_5 1 - 715472 716869 . 2 552,751 0,647 -chrXV 715472 716869 HC_gene_8600_tx_6 1 - 715472 716869 . 2 1130,117 0,1281 -chrXV 717070 718460 HC_gene_8158_tx_1 102 + 717070 718460 . 1 1391 0 -chrXV 717070 718536 HC_gene_8158_tx_2 20 + 717070 718536 . 1 1467 0 -chrXV 718428 718940 HC_gene_8601_tx_1 48 - 718428 718940 . 1 513 0 -chrXV 718428 719105 HC_gene_8601_tx_2 33 - 718428 719105 . 1 678 0 -chrXV 718428 719254 HC_gene_8601_tx_3 30 - 718428 719254 . 1 827 0 -chrXV 718428 719336 HC_gene_8601_tx_4 6 - 718428 719336 . 1 909 0 -chrXV 718428 719404 HC_gene_8601_tx_5 27 - 718428 719404 . 1 977 0 -chrXV 718428 719620 HC_gene_8601_tx_6 32 - 718428 719620 . 1 1193 0 -chrXV 718428 719774 HC_gene_8601_tx_7 22 - 718428 719774 . 1 1347 0 -chrXV 718428 719962 HC_gene_8601_tx_8 14 - 718428 719962 . 1 1535 0 -chrXV 718428 720245 HC_gene_8601_tx_9 167 - 718428 720245 . 1 1818 0 -chrXV 718428 720245 HC_gene_8601_tx_10 1 - 718428 720245 . 3 1086,361,90 0,1145,1728 -chrXV 718428 720245 HC_gene_8601_tx_11 1 - 718428 720245 . 2 746,991 0,827 -chrXV 718428 720245 HC_gene_8601_tx_12 1 - 718428 720245 . 2 82,1672 0,146 -chrXV 718428 720245 HC_gene_8601_tx_13 1 - 718428 720245 . 2 1525,91 0,1727 -chrXV 718428 720245 HC_gene_8601_tx_14 1 - 718428 720245 . 2 1638,126 0,1692 -chrXV 718428 720245 HC_gene_8601_tx_15 1 - 718428 720245 . 2 1201,274 0,1544 -chrXV 718428 720245 HC_gene_8601_tx_16 1 - 718428 720245 . 2 1307,400 0,1418 -chrXV 718428 720245 HC_gene_8601_tx_17 2 - 718428 720245 . 2 115,1619 0,199 -chrXV 718428 720245 HC_gene_8601_tx_18 1 - 718428 720245 . 2 104,1600 0,218 -chrXV 718428 720245 HC_gene_8601_tx_19 1 - 718428 720245 . 2 142,1619 0,199 -chrXV 718428 720245 HC_gene_8601_tx_20 1 - 718428 720245 . 2 115,1636 0,182 -chrXV 718525 719774 HC_gene_8601_tx_21 1 - 718525 719774 . 1 1250 0 -chrXV 720217 720548 MC_gene_8159_tx_1 1 + 720217 720548 . 1 332 0 -chrXV 720336 721727 HC_gene_8602_tx_1 20 - 720336 721727 . 1 1392 0 -chrXV 720336 721727 HC_gene_8602_tx_2 1 - 720336 721727 . 2 460,884 0,508 -chrXV 720336 721727 HC_gene_8602_tx_3 1 - 720336 721727 . 2 576,754 0,638 -chrXV 720422 721727 HC_gene_8602_tx_4 27 - 720422 721727 . 1 1306 0 -chrXV 720422 721727 HC_gene_8602_tx_5 1 - 720422 721727 . 2 483,728 0,578 -chrXV 721808 722604 LC_gene_8603_tx_1 1 - 721808 722604 . 2 468,144 0,653 -chrXV 721922 722745 HC_gene_8160_tx_1 36 + 721922 722745 . 2 354,285 0,539 -chrXV 721922 722745 HC_gene_8160_tx_2 75 + 721922 722745 . 2 331,303 0,521 -chrXV 721922 722745 HC_gene_8160_tx_3 26 + 721922 722745 . 2 340,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_4 1 + 721922 722745 . 2 319,307 0,517 -chrXV 721922 722745 HC_gene_8160_tx_5 49 + 721922 722745 . 2 334,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_6 21 + 721922 722745 . 2 325,303 0,521 -chrXV 721922 722745 HC_gene_8160_tx_7 1 + 721922 722745 . 2 328,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_8 8 + 721922 722745 . 2 331,302 0,522 -chrXV 721922 722745 HC_gene_8160_tx_9 63 + 721922 722745 . 2 335,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_10 25 + 721922 722745 . 2 342,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_11 3 + 721922 722745 . 2 335,288 0,536 -chrXV 721922 722745 HC_gene_8160_tx_12 20 + 721922 722745 . 2 325,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_13 25 + 721922 722745 . 2 336,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_14 2 + 721922 722745 . 2 342,288 0,536 -chrXV 721922 722745 HC_gene_8160_tx_15 4 + 721922 722745 . 2 331,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_16 4 + 721922 722745 . 2 325,306 0,518 -chrXV 721922 722745 HC_gene_8160_tx_17 1 + 721922 722745 . 2 336,303 0,521 -chrXV 721922 722745 HC_gene_8160_tx_18 1 + 721922 722745 . 2 333,288 0,536 -chrXV 721922 722745 HC_gene_8160_tx_19 5 + 721922 722745 . 2 319,311 0,513 -chrXV 721922 722745 HC_gene_8160_tx_20 23 + 721922 722745 . 2 337,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_21 19 + 721922 722745 . 2 338,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_22 61 + 721922 722745 . 2 345,279 0,545 -chrXV 721922 722745 HC_gene_8160_tx_23 1 + 721922 722745 . 2 271,343 0,481 -chrXV 721922 722745 HC_gene_8160_tx_24 4 + 721922 722745 . 2 332,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_25 20 + 721922 722745 . 2 331,301 0,523 -chrXV 721922 722745 HC_gene_8160_tx_26 5 + 721922 722745 . 2 333,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_27 8 + 721922 722745 . 2 339,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_28 6 + 721922 722745 . 2 345,272 0,552 -chrXV 721922 722745 HC_gene_8160_tx_29 5 + 721922 722745 . 2 354,288 0,536 -chrXV 721922 722745 HC_gene_8160_tx_30 4 + 721922 722745 . 2 343,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_31 4 + 721922 722745 . 2 325,307 0,517 -chrXV 721922 722745 HC_gene_8160_tx_32 3 + 721922 722745 . 2 340,288 0,536 -chrXV 721922 722745 HC_gene_8160_tx_33 2 + 721922 722745 . 2 330,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_34 6 + 721922 722745 . 2 333,303 0,521 -chrXV 721922 722745 HC_gene_8160_tx_35 1 + 721922 722745 . 2 308,328 0,496 -chrXV 721922 722745 HC_gene_8160_tx_36 2 + 721922 722745 . 2 341,285 0,539 -chrXV 721922 722745 HC_gene_8160_tx_37 2 + 721922 722745 . 2 336,285 0,539 -chrXV 721922 722745 HC_gene_8160_tx_38 1 + 721922 722745 . 3 325,97,112 0,521,712 -chrXV 721922 722745 HC_gene_8160_tx_39 1 + 721922 722745 . 2 325,310 0,514 -chrXV 721922 722745 HC_gene_8160_tx_40 1 + 721922 722745 . 2 363,234 0,590 -chrXV 721922 722745 HC_gene_8160_tx_41 1 + 721922 722745 . 2 321,310 0,514 -chrXV 721922 722745 HC_gene_8160_tx_42 1 + 721922 722745 . 2 319,306 0,518 -chrXV 721922 722745 HC_gene_8160_tx_43 1 + 721922 722745 . 2 337,285 0,539 -chrXV 721922 722745 HC_gene_8160_tx_44 1 + 721922 722745 . 2 331,298 0,526 -chrXV 721922 722745 HC_gene_8160_tx_45 3 + 721922 722745 . 2 321,311 0,513 -chrXV 721922 722745 HC_gene_8160_tx_46 1 + 721922 722745 . 2 331,305 0,519 -chrXV 721922 722745 HC_gene_8160_tx_47 6 + 721922 722745 . 2 341,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_48 1 + 721922 722745 . 2 308,314 0,510 -chrXV 721922 722745 HC_gene_8160_tx_49 2 + 721922 722745 . 2 335,285 0,539 -chrXV 721922 722745 HC_gene_8160_tx_50 2 + 721922 722745 . 2 338,288 0,536 -chrXV 721922 722745 HC_gene_8160_tx_51 1 + 721922 722745 . 2 336,288 0,536 -chrXV 721922 722745 HC_gene_8160_tx_52 1 + 721922 722745 . 2 301,325 0,499 -chrXV 721922 722745 HC_gene_8160_tx_53 3 + 721922 722745 . 2 345,290 0,534 -chrXV 721922 722745 HC_gene_8160_tx_54 2 + 721922 722745 . 2 334,288 0,536 -chrXV 721922 722745 HC_gene_8160_tx_55 1 + 721922 722745 . 2 319,313 0,511 -chrXV 721922 722745 HC_gene_8160_tx_56 1 + 721922 722745 . 2 308,317 0,507 -chrXV 721922 722745 HC_gene_8160_tx_57 2 + 721922 722745 . 2 337,288 0,536 -chrXV 721922 722745 HC_gene_8160_tx_58 1 + 721922 722745 . 2 345,289 0,535 -chrXV 721922 722745 HC_gene_8160_tx_59 1 + 721922 722745 . 2 340,285 0,539 -chrXV 721922 722745 HC_gene_8160_tx_60 2 + 721922 722745 . 2 326,308 0,516 -chrXV 721922 722745 HC_gene_8160_tx_61 1 + 721922 722745 . 2 329,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_62 1 + 721922 722745 . 2 186,295 0,529 -chrXV 721922 722745 HC_gene_8160_tx_63 1 + 721922 722745 . 2 345,291 0,533 -chrXV 721922 722745 HC_gene_8160_tx_64 1 + 721922 722745 . 3 331,157,96 0,521,728 -chrXV 721922 722745 HC_gene_8160_tx_65 1 + 721922 722745 . 2 321,312 0,512 -chrXV 721922 722745 HC_gene_8160_tx_66 3 + 721922 722745 . 2 343,288 0,536 -chrXV 721922 722745 HC_gene_8160_tx_67 1 + 721922 722745 . 2 301,317 0,507 -chrXV 721922 722745 HC_gene_8160_tx_68 1 + 721922 722745 . 2 325,308 0,516 -chrXV 721922 722745 HC_gene_8160_tx_69 1 + 721922 722745 . 2 331,288 0,536 -chrXV 721922 722745 HC_gene_8160_tx_70 1 + 721922 722745 . 2 319,279 0,545 -chrXV 721922 722745 HC_gene_8160_tx_71 1 + 721922 722745 . 2 345,286 0,538 -chrXV 721922 722745 HC_gene_8160_tx_72 1 + 721922 722745 . 2 325,309 0,515 -chrXV 721922 722745 HC_gene_8160_tx_73 1 + 721922 722745 . 2 322,312 0,512 -chrXV 722021 722745 HC_gene_8160_tx_74 1 + 722021 722745 . 2 234,288 0,437 -chrXV 722021 722745 HC_gene_8160_tx_75 6 + 722021 722745 . 2 236,295 0,430 -chrXV 722021 722745 HC_gene_8160_tx_76 1 + 722021 722745 . 2 226,288 0,437 -chrXV 722021 722745 HC_gene_8160_tx_77 8 + 722021 722745 . 2 235,295 0,430 -chrXV 722021 722745 HC_gene_8160_tx_78 6 + 722021 722745 . 2 226,295 0,430 -chrXV 722021 722745 HC_gene_8160_tx_79 6 + 722021 722745 . 2 232,303 0,422 -chrXV 722021 722745 HC_gene_8160_tx_80 3 + 722021 722745 . 2 241,295 0,430 -chrXV 722021 722745 HC_gene_8160_tx_81 1 + 722021 722745 . 2 220,313 0,412 -chrXV 722021 722745 HC_gene_8160_tx_82 3 + 722021 722745 . 2 234,295 0,430 -chrXV 722021 722745 HC_gene_8160_tx_83 7 + 722021 722745 . 2 246,279 0,446 -chrXV 722021 722745 HC_gene_8160_tx_84 4 + 722021 722745 . 2 243,295 0,430 -chrXV 722021 722745 HC_gene_8160_tx_85 1 + 722021 722745 . 2 232,272 0,453 -chrXV 722021 722745 HC_gene_8160_tx_86 1 + 722021 722745 . 2 239,288 0,437 -chrXV 722021 722745 HC_gene_8160_tx_87 1 + 722021 722745 . 2 234,303 0,422 -chrXV 722021 722745 HC_gene_8160_tx_88 1 + 722021 722745 . 2 209,317 0,408 -chrXV 722021 722745 HC_gene_8160_tx_89 2 + 722021 722745 . 2 237,295 0,430 -chrXV 722021 722745 HC_gene_8160_tx_90 3 + 722021 722745 . 2 226,303 0,422 -chrXV 722021 722745 HC_gene_8160_tx_91 2 + 722021 722745 . 2 255,285 0,440 -chrXV 722021 722745 HC_gene_8160_tx_92 1 + 722021 722745 . 2 246,289 0,436 -chrXV 722021 722745 HC_gene_8160_tx_93 1 + 722021 722745 . 2 233,295 0,430 -chrXV 722021 722745 HC_gene_8160_tx_94 1 + 722021 722745 . 2 235,303 0,422 -chrXV 722021 722745 HC_gene_8160_tx_95 1 + 722021 722745 . 2 239,295 0,430 -chrXV 722891 724983 HC_gene_8161_tx_1 10 + 722891 724983 . 1 2093 0 -chrXV 722891 725325 HC_gene_8161_tx_2 30 + 722891 725325 . 1 2435 0 -chrXV 722891 725325 HC_gene_8161_tx_3 1 + 722891 725325 . 2 1196,1135 0,1300 -chrXV 722891 725325 HC_gene_8161_tx_4 1 + 722891 725325 . 2 580,295 0,2140 -chrXV 722891 725447 HC_gene_8161_tx_5 154 + 722891 725447 . 1 2557 0 -chrXV 722891 725447 HC_gene_8161_tx_6 1 + 722891 725447 . 2 950,1428 0,1129 -chrXV 722891 725447 HC_gene_8161_tx_7 1 + 722891 725447 . 2 1362,1147 0,1410 -chrXV 722891 725447 HC_gene_8161_tx_8 1 + 722891 725447 . 2 417,2049 0,508 -chrXV 722891 725447 HC_gene_8161_tx_9 1 + 722891 725447 . 2 1368,1131 0,1426 -chrXV 722891 725447 HC_gene_8161_tx_10 1 + 722891 725447 . 2 1951,534 0,2023 -chrXV 722891 725447 HC_gene_8161_tx_11 1 + 722891 725447 . 2 1758,417 0,2140 -chrXV 722891 725447 HC_gene_8161_tx_12 1 + 722891 725447 . 2 1389,1127 0,1430 -chrXV 722891 725602 HC_gene_8161_tx_13 2 + 722891 725602 . 1 2712 0 -chrXV 722891 725602 HC_gene_8161_tx_14 1 + 722891 725602 . 2 1482,1169 0,1543 -chrXV 723046 725325 HC_gene_8161_tx_15 1 + 723046 725325 . 1 2280 0 -chrXV 723046 725447 HC_gene_8161_tx_16 10 + 723046 725447 . 1 2402 0 -chrXV 723046 725447 HC_gene_8161_tx_17 1 + 723046 725447 . 2 1333,1025 0,1377 -chrXV 723166 724983 HC_gene_8161_tx_18 7 + 723166 724983 . 1 1818 0 -chrXV 723166 725325 HC_gene_8161_tx_19 6 + 723166 725325 . 1 2160 0 -chrXV 723166 725325 HC_gene_8161_tx_20 1 + 723166 725325 . 2 130,1250 0,910 -chrXV 723166 725325 HC_gene_8161_tx_21 1 + 723166 725325 . 2 669,434 0,1726 -chrXV 723166 725325 HC_gene_8161_tx_22 1 + 723166 725325 . 2 419,1033 0,1127 -chrXV 723166 725447 HC_gene_8161_tx_23 22 + 723166 725447 . 1 2282 0 -chrXV 723166 725447 HC_gene_8161_tx_24 1 + 723166 725447 . 2 599,1236 0,1046 -chrXV 723317 725325 HC_gene_8161_tx_25 3 + 723317 725325 . 1 2009 0 -chrXV 723317 725325 HC_gene_8161_tx_26 1 + 723317 725325 . 2 145,1135 0,874 -chrXV 723317 725447 HC_gene_8161_tx_27 11 + 723317 725447 . 1 2131 0 -chrXV 723317 725447 HC_gene_8161_tx_28 1 + 723317 725447 . 2 145,1877 0,254 -chrXV 723493 724983 HC_gene_8161_tx_29 2 + 723493 724983 . 1 1491 0 -chrXV 723493 725325 HC_gene_8161_tx_30 1 + 723493 725325 . 1 1833 0 -chrXV 723493 725447 HC_gene_8161_tx_31 23 + 723493 725447 . 1 1955 0 -chrXV 723787 724983 HC_gene_8161_tx_32 1 + 723787 724983 . 1 1197 0 -chrXV 723787 725325 HC_gene_8161_tx_33 2 + 723787 725325 . 1 1539 0 -chrXV 723787 725447 HC_gene_8161_tx_34 24 + 723787 725447 . 1 1661 0 -chrXV 723787 725447 HC_gene_8161_tx_35 1 + 723787 725447 . 2 950,505 0,1156 -chrXV 723787 725447 HC_gene_8161_tx_36 1 + 723787 725447 . 2 125,1155 0,506 -chrXV 723787 725447 HC_gene_8161_tx_37 1 + 723787 725447 . 2 892,665 0,996 -chrXV 723890 724983 HC_gene_8161_tx_38 2 + 723890 724983 . 1 1094 0 -chrXV 723890 725325 HC_gene_8161_tx_39 1 + 723890 725325 . 1 1436 0 -chrXV 723890 725447 HC_gene_8161_tx_40 1 + 723890 725447 . 2 789,650 0,908 -chrXV 723890 725447 HC_gene_8161_tx_41 20 + 723890 725447 . 1 1558 0 -chrXV 723890 725447 HC_gene_8161_tx_42 1 + 723890 725447 . 2 613,753 0,805 -chrXV 723890 725447 HC_gene_8161_tx_43 1 + 723890 725447 . 2 741,716 0,842 -chrXV 723890 725602 HC_gene_8161_tx_44 1 + 723890 725602 . 1 1713 0 -chrXV 724007 724983 HC_gene_8161_tx_45 1 + 724007 724983 . 1 977 0 -chrXV 724007 725325 HC_gene_8161_tx_46 3 + 724007 725325 . 1 1319 0 -chrXV 724007 725447 HC_gene_8161_tx_47 19 + 724007 725447 . 1 1441 0 -chrXV 724007 725447 HC_gene_8161_tx_48 1 + 724007 725447 . 2 730,650 0,791 -chrXV 724007 725447 HC_gene_8161_tx_49 1 + 724007 725447 . 2 337,716 0,725 -chrXV 724007 725602 HC_gene_8161_tx_50 1 + 724007 725602 . 1 1596 0 -chrXV 724108 724983 HC_gene_8161_tx_51 2 + 724108 724983 . 1 876 0 -chrXV 724108 725325 HC_gene_8161_tx_52 3 + 724108 725325 . 1 1218 0 -chrXV 724108 725447 HC_gene_8161_tx_53 25 + 724108 725447 . 1 1340 0 -chrXV 724231 724983 HC_gene_8161_tx_54 4 + 724231 724983 . 1 753 0 -chrXV 724231 725447 HC_gene_8161_tx_55 13 + 724231 725447 . 1 1217 0 -chrXV 724295 724983 HC_gene_8161_tx_56 7 + 724295 724983 . 1 689 0 -chrXV 724295 725325 HC_gene_8161_tx_57 4 + 724295 725325 . 1 1031 0 -chrXV 724295 725447 HC_gene_8161_tx_58 45 + 724295 725447 . 1 1153 0 -chrXV 724390 724983 HC_gene_8161_tx_59 3 + 724390 724983 . 1 594 0 -chrXV 724390 725325 HC_gene_8161_tx_60 5 + 724390 725325 . 1 936 0 -chrXV 724390 725447 HC_gene_8161_tx_61 29 + 724390 725447 . 1 1058 0 -chrXV 724390 725602 HC_gene_8161_tx_62 1 + 724390 725602 . 1 1213 0 -chrXV 724549 724983 HC_gene_8161_tx_72 2 + 724549 724983 . 1 435 0 -chrXV 724549 725325 HC_gene_8161_tx_63 2 + 724549 725325 . 1 777 0 -chrXV 724549 725447 HC_gene_8161_tx_64 45 + 724549 725447 . 1 899 0 -chrXV 724606 724983 HC_gene_8161_tx_73 1 + 724606 724983 . 1 378 0 -chrXV 724606 725325 HC_gene_8161_tx_65 1 + 724606 725325 . 1 720 0 -chrXV 724606 725447 HC_gene_8161_tx_66 15 + 724606 725447 . 1 842 0 -chrXV 724606 725602 HC_gene_8161_tx_67 1 + 724606 725602 . 1 997 0 -chrXV 724747 725325 HC_gene_8161_tx_68 7 + 724747 725325 . 1 579 0 -chrXV 724747 725447 HC_gene_8161_tx_69 42 + 724747 725447 . 1 701 0 -chrXV 724747 725602 HC_gene_8161_tx_70 1 + 724747 725602 . 1 856 0 -chrXV 724887 725325 HC_gene_8161_tx_74 20 + 724887 725325 . 1 439 0 -chrXV 724887 725447 HC_gene_8161_tx_71 124 + 724887 725447 . 1 561 0 -chrXV 725079 725325 HC_gene_8161_tx_75 4 + 725079 725325 . 1 247 0 -chrXV 725079 725447 HC_gene_8161_tx_76 38 + 725079 725447 . 1 369 0 -chrXV 725079 725602 HC_gene_8161_tx_77 1 + 725079 725602 . 1 524 0 -chrXV 725441 727243 HC_gene_8604_tx_1 11 - 725441 727243 . 1 1803 0 -chrXV 727482 729727 HC_gene_8162_tx_1 40 + 727482 729727 . 1 2246 0 -chrXV 727482 729727 HC_gene_8162_tx_2 1 + 727482 729727 . 2 1049,1130 0,1116 -chrXV 727482 729727 HC_gene_8162_tx_3 1 + 727482 729727 . 2 1218,969 0,1277 -chrXV 727482 729727 HC_gene_8162_tx_4 1 + 727482 729727 . 2 1218,905 0,1341 -chrXV 727482 729727 HC_gene_8162_tx_5 1 + 727482 729727 . 2 1218,962 0,1284 -chrXV 727482 729727 HC_gene_8162_tx_6 1 + 727482 729727 . 2 1042,1019 0,1227 -chrXV 727482 729788 HC_gene_8162_tx_7 6 + 727482 729788 . 1 2307 0 -chrXV 727502 729727 HC_gene_8162_tx_8 1 + 727502 729727 . 2 1740,370 0,1856 -chrXV 727641 729727 HC_gene_8162_tx_9 4 + 727641 729727 . 1 2087 0 -chrXV 727704 729727 HC_gene_8162_tx_10 3 + 727704 729727 . 1 2024 0 -chrXV 727704 729788 HC_gene_8162_tx_11 1 + 727704 729788 . 1 2085 0 -chrXV 727843 729727 HC_gene_8162_tx_12 6 + 727843 729727 . 1 1885 0 -chrXV 727843 729788 HC_gene_8162_tx_13 1 + 727843 729788 . 1 1946 0 -chrXV 727843 729860 HC_gene_8162_tx_14 1 + 727843 729860 . 1 2018 0 -chrXV 728953 729727 HC_gene_8162_tx_15 19 + 728953 729727 . 1 775 0 -chrXV 728953 729788 HC_gene_8162_tx_16 3 + 728953 729788 . 1 836 0 -chrXV 729227 729727 HC_gene_8162_tx_17 26 + 729227 729727 . 1 501 0 -chrXV 729227 729788 HC_gene_8162_tx_18 2 + 729227 729788 . 1 562 0 -chrXV 729281 729727 HC_gene_8162_tx_19 10 + 729281 729727 . 1 447 0 -chrXV 729281 729788 HC_gene_8162_tx_20 2 + 729281 729788 . 1 508 0 -chrXV 729834 730962 HC_gene_8605_tx_1 8 - 729834 730962 . 1 1129 0 -chrXV 729834 733497 HC_gene_8605_tx_2 15 - 729834 733497 . 1 3664 0 -chrXV 729834 733497 HC_gene_8605_tx_3 1 - 729834 733497 . 3 998,1383,650 0,1334,3014 -chrXV 729834 733497 HC_gene_8605_tx_4 1 - 729834 733497 . 2 2243,1346 0,2318 -chrXV 729834 733497 HC_gene_8605_tx_5 1 - 729834 733497 . 2 313,3245 0,419 -chrXV 733758 736306 HC_gene_8163_tx_1 7 + 733758 736306 . 1 2549 0 -chrXV 733758 736306 HC_gene_8163_tx_2 1 + 733758 736306 . 2 320,1243 0,1306 -chrXV 733951 736306 HC_gene_8163_tx_3 2 + 733951 736306 . 1 2356 0 -chrXV 734935 736306 HC_gene_8163_tx_4 5 + 734935 736306 . 1 1372 0 -chrXV 736296 736787 HC_gene_8606_tx_1 36 - 736296 736787 . 1 492 0 -chrXV 736296 736931 HC_gene_8606_tx_2 33 - 736296 736931 . 1 636 0 -chrXV 736296 736931 HC_gene_8606_tx_3 1 - 736296 736931 . 2 407,178 0,458 -chrXV 736296 737235 HC_gene_8606_tx_4 25 - 736296 737235 . 1 940 0 -chrXV 736296 737399 HC_gene_8606_tx_5 18 - 736296 737399 . 1 1104 0 -chrXV 736296 737878 HC_gene_8606_tx_6 125 - 736296 737878 . 1 1583 0 -chrXV 736296 737878 HC_gene_8606_tx_7 1 - 736296 737878 . 2 629,850 0,733 -chrXV 736296 737878 HC_gene_8606_tx_8 2 - 736296 737878 . 2 655,837 0,746 -chrXV 736296 737878 HC_gene_8606_tx_9 1 - 736296 737878 . 2 647,834 0,749 -chrXV 736296 737878 HC_gene_8606_tx_10 1 - 736296 737878 . 2 487,213 0,1370 -chrXV 736296 737878 HC_gene_8606_tx_11 1 - 736296 737878 . 2 969,423 0,1160 -chrXV 736296 737878 HC_gene_8606_tx_12 1 - 736296 737878 . 2 959,559 0,1024 -chrXV 738280 738830 HC_gene_8164_tx_1 421 + 738280 738830 . 1 551 0 -chrXV 738817 741772 HC_gene_8607_tx_1 10 - 738817 741772 . 1 2956 0 -chrXV 742035 742635 MC_gene_8608_tx_1 1 - 742035 742635 . 1 601 0 -chrXV 742773 744347 HC_gene_8165_tx_1 1 + 742773 744347 . 2 30,1347 0,228 -chrXV 742798 743828 HC_gene_8165_tx_32 4 + 742798 743828 . 1 1031 0 -chrXV 742798 744292 HC_gene_8165_tx_2 1 + 742798 744292 . 1 1495 0 -chrXV 742798 744297 HC_gene_8165_tx_3 2 + 742798 744297 . 1 1500 0 -chrXV 742798 744299 HC_gene_8165_tx_4 1 + 742798 744299 . 1 1502 0 -chrXV 742798 744301 HC_gene_8165_tx_5 3 + 742798 744301 . 1 1504 0 -chrXV 742798 744301 HC_gene_8165_tx_6 1 + 742798 744301 . 2 861,580 0,924 -chrXV 742798 744305 HC_gene_8165_tx_7 3 + 742798 744305 . 1 1508 0 -chrXV 742798 744306 HC_gene_8165_tx_8 7 + 742798 744306 . 1 1509 0 -chrXV 742798 744307 HC_gene_8165_tx_9 6 + 742798 744307 . 1 1510 0 -chrXV 742798 744315 HC_gene_8165_tx_10 1 + 742798 744315 . 1 1518 0 -chrXV 742798 744317 HC_gene_8165_tx_11 1 + 742798 744317 . 1 1520 0 -chrXV 742798 744318 HC_gene_8165_tx_12 1 + 742798 744318 . 1 1521 0 -chrXV 742798 744319 HC_gene_8165_tx_13 2 + 742798 744319 . 1 1522 0 -chrXV 742798 744320 HC_gene_8165_tx_14 1 + 742798 744320 . 1 1523 0 -chrXV 742798 744321 HC_gene_8165_tx_15 2 + 742798 744321 . 1 1524 0 -chrXV 742798 744322 HC_gene_8165_tx_16 2 + 742798 744322 . 1 1525 0 -chrXV 742798 744326 HC_gene_8165_tx_17 5 + 742798 744326 . 1 1529 0 -chrXV 742798 744327 HC_gene_8165_tx_18 2 + 742798 744327 . 1 1530 0 -chrXV 742798 744331 HC_gene_8165_tx_19 2 + 742798 744331 . 1 1534 0 -chrXV 742798 744332 HC_gene_8165_tx_20 3 + 742798 744332 . 1 1535 0 -chrXV 742798 744333 HC_gene_8165_tx_21 1 + 742798 744333 . 1 1536 0 -chrXV 742798 744337 HC_gene_8165_tx_22 3 + 742798 744337 . 1 1540 0 -chrXV 742798 744340 HC_gene_8165_tx_23 4 + 742798 744340 . 1 1543 0 -chrXV 742798 744340 HC_gene_8165_tx_24 1 + 742798 744340 . 2 861,619 0,924 -chrXV 742798 744347 HC_gene_8165_tx_25 1 + 742798 744347 . 1 1550 0 -chrXV 742798 744348 HC_gene_8165_tx_26 7 + 742798 744348 . 1 1551 0 -chrXV 742798 744350 HC_gene_8165_tx_27 1 + 742798 744350 . 2 866,615 0,938 -chrXV 742798 744350 HC_gene_8165_tx_28 1 + 742798 744350 . 1 1553 0 -chrXV 742798 744352 HC_gene_8165_tx_29 1 + 742798 744352 . 1 1555 0 -chrXV 742798 744353 HC_gene_8165_tx_30 1 + 742798 744353 . 1 1556 0 -chrXV 742798 744355 HC_gene_8165_tx_31 1 + 742798 744355 . 1 1558 0 -chrXV 742798 745590 HC_gene_8165_tx_33 1 + 742798 745590 . 2 1017,1716 0,1077 -chrXV 744044 745379 HC_gene_8609_tx_1 4 - 744044 745379 . 1 1336 0 -chrXV 744189 745293 HC_gene_8609_tx_2 3 - 744189 745293 . 1 1105 0 -chrXV 744189 745379 HC_gene_8609_tx_3 17 - 744189 745379 . 1 1191 0 -chrXV 745509 746144 LC_gene_8610_tx_1 1 - 745509 746144 . 1 636 0 -chrXV 746406 746987 HC_gene_8611_tx_1 1 - 746406 746987 . 1 582 0 -chrXV 746406 747168 HC_gene_8611_tx_2 2 - 746406 747168 . 1 763 0 -chrXV 746406 747324 HC_gene_8611_tx_3 8 - 746406 747324 . 1 919 0 -chrXV 746406 747910 HC_gene_8611_tx_5 1 - 746406 747910 . 1 1505 0 -chrXV 746577 746987 HC_gene_8611_tx_6 17 - 746577 746987 . 1 411 0 -chrXV 746577 747168 HC_gene_8611_tx_7 3 - 746577 747168 . 1 592 0 -chrXV 746577 747324 HC_gene_8611_tx_4 94 - 746577 747324 . 1 748 0 -chrXV 746577 749039 HC_gene_8611_tx_8 3 - 746577 749039 . 1 2463 0 -chrXV 747421 747910 HC_gene_8611_tx_9 17 - 747421 747910 . 1 490 0 -chrXV 747421 748109 HC_gene_8611_tx_10 1 - 747421 748109 . 1 689 0 -chrXV 747421 748332 HC_gene_8611_tx_11 4 - 747421 748332 . 1 912 0 -chrXV 747421 748801 HC_gene_8611_tx_12 5 - 747421 748801 . 1 1381 0 -chrXV 747421 749039 HC_gene_8611_tx_13 31 - 747421 749039 . 1 1619 0 -chrXV 749196 750722 HC_gene_8166_tx_1 3 + 749196 750722 . 1 1527 0 -chrXV 749196 752139 HC_gene_8166_tx_2 18 + 749196 752139 . 1 2944 0 -chrXV 749378 752139 HC_gene_8166_tx_3 1 + 749378 752139 . 2 1215,1458 0,1304 -chrXV 749378 752139 HC_gene_8166_tx_4 3 + 749378 752139 . 1 2762 0 -chrXV 750020 752139 HC_gene_8166_tx_5 3 + 750020 752139 . 1 2120 0 -chrXV 750020 752139 HC_gene_8166_tx_6 1 + 750020 752139 . 2 1104,941 0,1179 -chrXV 750607 752139 HC_gene_8166_tx_7 5 + 750607 752139 . 1 1533 0 -chrXV 751312 752139 HC_gene_8166_tx_8 12 + 751312 752139 . 1 828 0 -chrXV 751312 752139 HC_gene_8166_tx_9 1 + 751312 752139 . 2 104,449 0,379 -chrXV 751871 752798 HC_gene_8612_tx_1 7 - 751871 752798 . 1 928 0 -chrXV 751871 753116 HC_gene_8612_tx_2 5 - 751871 753116 . 1 1246 0 -chrXV 751871 753451 HC_gene_8612_tx_3 5 - 751871 753451 . 1 1581 0 -chrXV 751871 754681 HC_gene_8612_tx_5 1 - 751871 754681 . 1 2811 0 -chrXV 751871 755066 HC_gene_8612_tx_6 6 - 751871 755066 . 1 3196 0 -chrXV 752054 753451 HC_gene_8612_tx_4 2 - 752054 753451 . 1 1398 0 -chrXV 752054 755066 HC_gene_8612_tx_7 1 - 752054 755066 . 3 112,1294,1445 0,180,1568 -chrXV 755320 756298 HC_gene_8167_tx_1 64 + 755320 756298 . 1 979 0 -chrXV 755320 756390 HC_gene_8167_tx_2 4 + 755320 756390 . 1 1071 0 -chrXV 755323 756298 HC_gene_8167_tx_3 1 + 755323 756298 . 2 231,450 0,526 -chrXV 755537 756298 HC_gene_8167_tx_4 11 + 755537 756298 . 1 762 0 -chrXV 755537 756390 HC_gene_8167_tx_5 1 + 755537 756390 . 1 854 0 -chrXV 755769 756298 HC_gene_8167_tx_6 26 + 755769 756298 . 1 530 0 -chrXV 755769 756390 HC_gene_8167_tx_7 5 + 755769 756390 . 1 622 0 -chrXV 755843 756298 HC_gene_8167_tx_8 4 + 755843 756298 . 1 456 0 -chrXV 756303 757072 HC_gene_8613_tx_1 14 - 756303 757072 . 1 770 0 -chrXV 756303 757500 HC_gene_8613_tx_2 10 - 756303 757500 . 1 1198 0 -chrXV 756303 757620 HC_gene_8613_tx_3 87 - 756303 757620 . 1 1318 0 -chrXV 756303 757620 HC_gene_8613_tx_4 1 - 756303 757620 . 2 829,399 0,919 -chrXV 756303 757620 HC_gene_8613_tx_5 1 - 756303 757620 . 2 566,318 0,1000 -chrXV 757874 758346 HC_gene_8168_tx_1 1 + 757874 758346 . 1 473 0 -chrXV 757880 758346 HC_gene_8168_tx_2 123 + 757880 758346 . 1 467 0 -chrXV 757880 759289 HC_gene_8169_tx_1 33 + 757880 759289 . 1 1410 0 -chrXV 757882 758346 HC_gene_8168_tx_3 2 + 757882 758346 . 1 465 0 -chrXV 757891 758346 HC_gene_8168_tx_4 2 + 757891 758346 . 1 456 0 -chrXV 757892 758346 HC_gene_8168_tx_5 1 + 757892 758346 . 1 455 0 -chrXV 757893 758346 HC_gene_8168_tx_6 1 + 757893 758346 . 1 454 0 -chrXV 758301 759289 HC_gene_8169_tx_2 31 + 758301 759289 . 1 989 0 -chrXV 758301 759289 HC_gene_8169_tx_3 1 + 758301 759289 . 2 324,590 0,399 -chrXV 758459 759289 HC_gene_8169_tx_4 7 + 758459 759289 . 1 831 0 -chrXV 758466 758932 LC_gene_8614_tx_1 1 - 758466 758932 . 1 467 0 -chrXV 758550 759289 HC_gene_8169_tx_5 10 + 758550 759289 . 1 740 0 -chrXV 759237 759530 HC_gene_8615_tx_1 67 - 759237 759530 . 1 294 0 -chrXV 759739 760806 HC_gene_8170_tx_1 17 + 759739 760806 . 1 1068 0 -chrXV 759739 760863 HC_gene_8170_tx_2 3 + 759739 760863 . 1 1125 0 -chrXV 759996 760806 HC_gene_8170_tx_3 3 + 759996 760806 . 1 811 0 -chrXV 759996 760863 HC_gene_8170_tx_4 1 + 759996 760863 . 1 868 0 -chrXV 760682 761286 HC_gene_8616_tx_1 402 - 760682 761286 . 1 605 0 -chrXV 760682 761286 HC_gene_8616_tx_2 1 - 760682 761286 . 2 45,471 0,134 -chrXV 760682 761286 HC_gene_8616_tx_3 1 - 760682 761286 . 2 460,89 0,516 -chrXV 760682 761286 HC_gene_8616_tx_4 1 - 760682 761286 . 2 468,89 0,516 -chrXV 760682 761286 HC_gene_8616_tx_5 1 - 760682 761286 . 2 299,262 0,343 -chrXV 760682 761286 HC_gene_8616_tx_6 1 - 760682 761286 . 2 430,109 0,496 -chrXV 761477 761824 HC_gene_8617_tx_1 15 - 761477 761824 . 1 348 0 -chrXV 761477 762105 HC_gene_8617_tx_2 115 - 761477 762105 . 1 629 0 -chrXV 761494 761802 LC_gene_8171_tx_1 1 + 761494 761802 . 1 309 0 -chrXV 761913 762823 LC_gene_8172_tx_1 1 + 761913 762823 . 1 911 0 -chrXV 762824 766729 HC_gene_8173_tx_1 1 + 762824 766729 . 1 3906 0 -chrXV 763115 766729 HC_gene_8173_tx_2 1 + 763115 766729 . 1 3615 0 -chrXV 763352 766729 HC_gene_8173_tx_3 1 + 763352 766729 . 2 2588,720 0,2658 -chrXV 763352 766729 HC_gene_8173_tx_4 2 + 763352 766729 . 1 3378 0 -chrXV 763520 766729 HC_gene_8173_tx_5 3 + 763520 766729 . 1 3210 0 -chrXV 766631 767998 HC_gene_8618_tx_1 6 - 766631 767998 . 1 1368 0 -chrXV 766739 767813 HC_gene_8618_tx_2 4 - 766739 767813 . 1 1075 0 -chrXV 766739 767998 HC_gene_8618_tx_3 33 - 766739 767998 . 1 1260 0 -chrXV 768361 769933 HC_gene_8174_tx_1 1 + 768361 769933 . 1 1573 0 -chrXV 768361 770085 HC_gene_8174_tx_2 15 + 768361 770085 . 1 1725 0 -chrXV 768373 770085 HC_gene_8174_tx_3 1 + 768373 770085 . 1 1713 0 -chrXV 768388 770085 HC_gene_8174_tx_4 1 + 768388 770085 . 1 1698 0 -chrXV 769344 770085 HC_gene_8174_tx_5 6 + 769344 770085 . 1 742 0 -chrXV 769522 769898 LC_gene_8619_tx_1 1 - 769522 769898 . 1 377 0 -chrXV 769667 770085 HC_gene_8174_tx_6 15 + 769667 770085 . 1 419 0 -chrXV 769911 770330 HC_gene_8620_tx_1 4 - 769911 770330 . 1 420 0 -chrXV 770016 770549 HC_gene_8175_tx_1 7 + 770016 770549 . 1 534 0 -chrXV 770700 772206 MC_gene_8621_tx_1 1 - 770700 772206 . 1 1507 0 -chrXV 770748 772304 HC_gene_8176_tx_1 252 + 770748 772304 . 1 1557 0 -chrXV 770748 772304 HC_gene_8176_tx_2 1 + 770748 772304 . 2 262,824 0,733 -chrXV 770748 772304 HC_gene_8176_tx_3 1 + 770748 772304 . 2 858,432 0,1125 -chrXV 770748 772304 HC_gene_8176_tx_4 1 + 770748 772304 . 2 1076,443 0,1114 -chrXV 770748 772304 HC_gene_8176_tx_5 1 + 770748 772304 . 2 1013,489 0,1068 -chrXV 770748 772304 HC_gene_8176_tx_6 1 + 770748 772304 . 2 136,753 0,804 -chrXV 771113 772304 HC_gene_8176_tx_7 1 + 771113 772304 . 2 438,594 0,598 -chrXV 771113 772304 HC_gene_8176_tx_8 10 + 771113 772304 . 1 1192 0 -chrXV 771187 772304 HC_gene_8176_tx_9 33 + 771187 772304 . 1 1118 0 -chrXV 771187 772304 HC_gene_8176_tx_10 1 + 771187 772304 . 2 330,579 0,539 -chrXV 771436 772304 HC_gene_8176_tx_11 35 + 771436 772304 . 1 869 0 -chrXV 771577 772304 HC_gene_8176_tx_12 36 + 771577 772304 . 1 728 0 -chrXV 771577 772304 HC_gene_8176_tx_13 1 + 771577 772304 . 2 211,468 0,260 -chrXV 771694 772304 HC_gene_8176_tx_14 87 + 771694 772304 . 1 611 0 -chrXV 771844 772304 HC_gene_8176_tx_15 73 + 771844 772304 . 1 461 0 -chrXV 771976 772304 HC_gene_8176_tx_16 61 + 771976 772304 . 1 329 0 -chrXV 772235 772429 MC_gene_8622_tx_1 1 - 772235 772429 . 1 195 0 -chrXV 772459 774327 HC_gene_8177_tx_1 34 + 772459 774327 . 1 1869 0 -chrXV 772459 774327 HC_gene_8177_tx_2 1 + 772459 774327 . 2 943,824 0,1045 -chrXV 772723 774327 HC_gene_8177_tx_3 3 + 772723 774327 . 1 1605 0 -chrXV 774468 775419 HC_gene_8178_tx_1 200 + 774468 775419 . 1 952 0 -chrXV 774468 775419 HC_gene_8178_tx_2 1 + 774468 775419 . 2 827,79 0,873 -chrXV 774468 775419 HC_gene_8178_tx_3 1 + 774468 775419 . 2 33,693 0,259 -chrXV 774468 775419 HC_gene_8178_tx_4 1 + 774468 775419 . 2 711,195 0,757 -chrXV 774468 775419 HC_gene_8178_tx_5 1 + 774468 775419 . 2 815,70 0,882 -chrXV 774468 775419 HC_gene_8178_tx_6 1 + 774468 775419 . 2 788,79 0,873 -chrXV 774603 775419 HC_gene_8178_tx_7 23 + 774603 775419 . 1 817 0 -chrXV 774603 775419 HC_gene_8178_tx_8 1 + 774603 775419 . 2 93,560 0,257 -chrXV 774603 775419 HC_gene_8178_tx_9 1 + 774603 775419 . 2 680,79 0,738 -chrXV 774798 775419 HC_gene_8178_tx_10 27 + 774798 775419 . 1 622 0 -chrXV 774798 775419 HC_gene_8178_tx_11 1 + 774798 775419 . 2 481,79 0,543 -chrXV 775028 775419 HC_gene_8178_tx_12 54 + 775028 775419 . 1 392 0 -chrXV 775387 775683 LC_gene_8623_tx_1 1 - 775387 775683 . 1 297 0 -chrXV 775667 778317 HC_gene_8179_tx_1 9 + 775667 778317 . 1 2651 0 -chrXV 775667 778317 HC_gene_8179_tx_2 1 + 775667 778317 . 2 1811,653 0,1998 -chrXV 778443 778778 HC_gene_8624_tx_1 117 - 778443 778778 . 1 336 0 -chrXV 778443 779424 HC_gene_8624_tx_2 330 - 778443 779424 . 2 417,38 0,944 -chrXV 778443 779424 HC_gene_8624_tx_3 39 - 778443 779424 . 1 982 0 -chrXV 778443 779424 HC_gene_8624_tx_4 3 - 778443 779424 . 2 405,38 0,944 -chrXV 778443 779424 HC_gene_8624_tx_5 3 - 778443 779424 . 2 417,172 0,810 -chrXV 778443 779424 HC_gene_8624_tx_6 4 - 778443 779424 . 2 397,54 0,928 -chrXV 778443 779424 HC_gene_8624_tx_7 2 - 778443 779424 . 2 412,23 0,959 -chrXV 779985 781551 MC_gene_8625_tx_1 1 - 779985 781551 . 1 1567 0 -chrXV 780105 780526 HC_gene_8180_tx_1 9 + 780105 780526 . 1 422 0 -chrXV 780105 780599 HC_gene_8180_tx_2 93 + 780105 780599 . 1 495 0 -chrXV 780343 780526 HC_gene_8180_tx_3 4 + 780343 780526 . 1 184 0 -chrXV 780343 780599 HC_gene_8180_tx_4 18 + 780343 780599 . 1 257 0 -chrXV 780891 781612 HC_gene_8181_tx_1 77 + 780891 781612 . 1 722 0 -chrXV 780891 781612 HC_gene_8181_tx_2 1 + 780891 781612 . 2 593,68 0,654 -chrXV 780891 781612 HC_gene_8181_tx_3 1 + 780891 781612 . 2 114,421 0,301 -chrXV 781893 783335 MC_gene_8182_tx_1 1 + 781893 783335 . 2 320,760 0,683 -chrXV 783265 784401 HC_gene_8626_tx_1 1 - 783265 784401 . 1 1137 0 -chrXV 783669 784224 HC_gene_8183_tx_1 5 + 783669 784224 . 1 556 0 -chrXV 783669 784683 HC_gene_8183_tx_2 21 + 783669 784683 . 1 1015 0 -chrXV 783669 784757 HC_gene_8183_tx_3 2 + 783669 784757 . 1 1089 0 -chrXV 783921 784224 HC_gene_8183_tx_4 2 + 783921 784224 . 1 304 0 -chrXV 783921 784683 HC_gene_8183_tx_5 9 + 783921 784683 . 1 763 0 -chrXV 783921 784757 HC_gene_8183_tx_6 2 + 783921 784757 . 1 837 0 -chrXV 784121 784401 HC_gene_8626_tx_2 1 - 784121 784401 . 1 281 0 -chrXV 784710 786935 HC_gene_8184_tx_1 3 + 784710 786935 . 1 2226 0 -chrXV 784803 786935 HC_gene_8184_tx_2 46 + 784803 786935 . 1 2133 0 -chrXV 784803 786935 HC_gene_8184_tx_3 1 + 784803 786935 . 2 1460,385 0,1748 -chrXV 784909 786935 HC_gene_8184_tx_4 2 + 784909 786935 . 1 2027 0 -chrXV 785011 786935 HC_gene_8184_tx_5 5 + 785011 786935 . 1 1925 0 -chrXV 785130 786935 HC_gene_8184_tx_6 3 + 785130 786935 . 1 1806 0 -chrXV 785296 786935 HC_gene_8184_tx_7 9 + 785296 786935 . 1 1640 0 -chrXV 785377 786935 HC_gene_8184_tx_8 1 + 785377 786935 . 2 666,682 0,877 -chrXV 785377 786935 HC_gene_8184_tx_9 1 + 785377 786935 . 2 939,577 0,982 -chrXV 785377 786935 HC_gene_8184_tx_10 1 + 785377 786935 . 1 1559 0 -chrXV 785428 786935 HC_gene_8184_tx_11 16 + 785428 786935 . 1 1508 0 -chrXV 785777 786935 HC_gene_8184_tx_12 11 + 785777 786935 . 1 1159 0 -chrXV 785948 786935 HC_gene_8184_tx_13 23 + 785948 786935 . 1 988 0 -chrXV 785992 786924 MC_gene_8627_tx_1 1 - 785992 786924 . 1 933 0 -chrXV 786186 786935 HC_gene_8184_tx_14 18 + 786186 786935 . 1 750 0 -chrXV 786478 786935 HC_gene_8184_tx_15 19 + 786478 786935 . 1 458 0 -chrXV 787161 788786 HC_gene_8185_tx_1 36 + 787161 788786 . 1 1626 0 -chrXV 787161 788786 HC_gene_8185_tx_2 1 + 787161 788786 . 2 275,904 0,722 -chrXV 787161 788897 HC_gene_8185_tx_3 12 + 787161 788897 . 1 1737 0 -chrXV 787383 788786 HC_gene_8185_tx_4 8 + 787383 788786 . 1 1404 0 -chrXV 787383 788897 HC_gene_8185_tx_5 2 + 787383 788897 . 1 1515 0 -chrXV 788060 788786 HC_gene_8185_tx_6 3 + 788060 788786 . 1 727 0 -chrXV 788060 788897 HC_gene_8185_tx_7 1 + 788060 788897 . 1 838 0 -chrXV 788781 789826 MC_gene_8628_tx_1 1 - 788781 789826 . 1 1046 0 -chrXV 789397 790925 LC_gene_8186_tx_1 1 + 789397 790925 . 1 1529 0 -chrXV 789921 790641 HC_gene_8629_tx_1 12 - 789921 790641 . 1 721 0 -chrXV 789921 791449 HC_gene_8629_tx_2 8 - 789921 791449 . 1 1529 0 -chrXV 789921 791947 HC_gene_8629_tx_4 9 - 789921 791947 . 1 2027 0 -chrXV 789921 792069 HC_gene_8629_tx_5 5 - 789921 792069 . 1 2149 0 -chrXV 789921 792138 HC_gene_8629_tx_6 1 - 789921 792138 . 1 2218 0 -chrXV 789921 792281 HC_gene_8629_tx_7 40 - 789921 792281 . 1 2361 0 -chrXV 789921 792281 HC_gene_8629_tx_8 1 - 789921 792281 . 2 1755,266 0,2095 -chrXV 789921 792281 HC_gene_8629_tx_9 1 - 789921 792281 . 2 1011,1267 0,1094 -chrXV 789921 792281 HC_gene_8629_tx_10 1 - 789921 792281 . 2 1011,1285 0,1076 -chrXV 789921 792281 HC_gene_8629_tx_11 1 - 789921 792281 . 2 1075,1193 0,1168 -chrXV 789921 792281 HC_gene_8629_tx_12 1 - 789921 792281 . 2 1087,1213 0,1148 -chrXV 789921 792281 HC_gene_8629_tx_13 2 - 789921 792281 . 2 1075,1202 0,1159 -chrXV 790144 790641 HC_gene_8629_tx_18 1 - 790144 790641 . 1 498 0 -chrXV 790144 791449 HC_gene_8629_tx_3 3 - 790144 791449 . 1 1306 0 -chrXV 790144 792069 HC_gene_8629_tx_14 1 - 790144 792069 . 2 869,990 0,936 -chrXV 790144 792069 HC_gene_8629_tx_15 1 - 790144 792069 . 1 1926 0 -chrXV 790144 792138 HC_gene_8629_tx_16 1 - 790144 792138 . 1 1995 0 -chrXV 790144 792281 HC_gene_8629_tx_17 6 - 790144 792281 . 1 2138 0 -chrXV 791376 792281 HC_gene_8629_tx_19 1 - 791376 792281 . 1 906 0 -chrXV 792493 793977 HC_gene_8187_tx_1 26 + 792493 793977 . 1 1485 0 -chrXV 792493 793977 HC_gene_8187_tx_2 1 + 792493 793977 . 2 878,522 0,963 -chrXV 792493 794045 HC_gene_8187_tx_3 4 + 792493 794045 . 1 1553 0 -chrXV 792493 794045 HC_gene_8187_tx_4 1 + 792493 794045 . 2 875,615 0,938 -chrXV 793959 795364 HC_gene_8630_tx_1 34 - 793959 795364 . 1 1406 0 -chrXV 793959 795582 HC_gene_8630_tx_2 7 - 793959 795582 . 1 1624 0 -chrXV 793959 795582 HC_gene_8630_tx_3 1 - 793959 795582 . 2 899,311 0,1313 -chrXV 793959 795770 HC_gene_8630_tx_4 1 - 793959 795770 . 1 1812 0 -chrXV 793959 796854 HC_gene_8630_tx_5 1 - 793959 796854 . 1 2896 0 -chrXV 795164 795801 LC_gene_8188_tx_1 1 + 795164 795801 . 1 638 0 -chrXV 795706 796653 HC_gene_8631_tx_1 9 - 795706 796653 . 1 948 0 -chrXV 795706 796724 HC_gene_8631_tx_2 15 - 795706 796724 . 1 1019 0 -chrXV 795706 796853 HC_gene_8631_tx_3 1 - 795706 796853 . 1 1148 0 -chrXV 795706 796854 HC_gene_8631_tx_4 126 - 795706 796854 . 1 1149 0 -chrXV 795706 796854 HC_gene_8631_tx_5 1 - 795706 796854 . 3 553,218,197 0,612,952 -chrXV 795706 796855 HC_gene_8631_tx_6 1 - 795706 796855 . 1 1150 0 -chrXV 797049 798386 LC_gene_8632_tx_1 1 - 797049 798386 . 1 1338 0 -chrXV 797292 798445 HC_gene_8189_tx_1 2 + 797292 798445 . 1 1154 0 -chrXV 797292 798535 HC_gene_8189_tx_2 3 + 797292 798535 . 1 1244 0 -chrXV 797437 798535 HC_gene_8189_tx_3 1 + 797437 798535 . 2 312,752 0,347 -chrXV 797442 798445 HC_gene_8189_tx_4 407 + 797442 798445 . 1 1004 0 -chrXV 797442 798445 HC_gene_8189_tx_5 1 + 797442 798445 . 2 371,579 0,425 -chrXV 797442 798445 HC_gene_8189_tx_6 1 + 797442 798445 . 2 83,559 0,445 -chrXV 797442 798445 HC_gene_8189_tx_7 1 + 797442 798445 . 2 371,559 0,445 -chrXV 797442 798535 HC_gene_8189_tx_8 466 + 797442 798535 . 1 1094 0 -chrXV 797442 798535 HC_gene_8189_tx_9 1 + 797442 798535 . 2 388,612 0,482 -chrXV 797442 798535 HC_gene_8189_tx_10 1 + 797442 798535 . 2 280,705 0,389 -chrXV 797442 798535 HC_gene_8189_tx_11 1 + 797442 798535 . 2 512,510 0,584 -chrXV 797442 798535 HC_gene_8189_tx_12 1 + 797442 798535 . 2 211,677 0,417 -chrXV 797442 798535 HC_gene_8189_tx_13 1 + 797442 798535 . 2 69,982 0,112 -chrXV 797442 798535 HC_gene_8189_tx_14 1 + 797442 798535 . 2 94,930 0,164 -chrXV 797442 798535 HC_gene_8189_tx_15 1 + 797442 798535 . 2 94,925 0,169 -chrXV 797442 798535 HC_gene_8189_tx_16 1 + 797442 798535 . 2 72,677 0,417 -chrXV 797442 798535 HC_gene_8189_tx_17 1 + 797442 798535 . 2 771,234 0,860 -chrXV 797442 798695 HC_gene_8189_tx_18 23 + 797442 798695 . 1 1254 0 -chrXV 797442 798695 HC_gene_8189_tx_19 1 + 797442 798695 . 2 72,865 0,389 -chrXV 797442 798695 HC_gene_8189_tx_20 1 + 797442 798695 . 2 1077,113 0,1141 -chrXV 797564 798445 HC_gene_8189_tx_21 37 + 797564 798445 . 1 882 0 -chrXV 797564 798535 HC_gene_8189_tx_22 43 + 797564 798535 . 1 972 0 -chrXV 797564 798695 HC_gene_8189_tx_23 4 + 797564 798695 . 1 1132 0 -chrXV 797732 798445 HC_gene_8189_tx_24 56 + 797732 798445 . 1 714 0 -chrXV 797732 798535 HC_gene_8189_tx_25 55 + 797732 798535 . 1 804 0 -chrXV 797732 798695 HC_gene_8189_tx_26 4 + 797732 798695 . 1 964 0 -chrXV 797904 798445 HC_gene_8189_tx_29 132 + 797904 798445 . 1 542 0 -chrXV 797904 798535 HC_gene_8189_tx_30 155 + 797904 798535 . 1 632 0 -chrXV 797904 798695 HC_gene_8189_tx_27 10 + 797904 798695 . 1 792 0 -chrXV 797962 798445 HC_gene_8189_tx_31 35 + 797962 798445 . 1 484 0 -chrXV 797962 798535 HC_gene_8189_tx_32 51 + 797962 798535 . 1 574 0 -chrXV 797962 798535 HC_gene_8189_tx_33 1 + 797962 798535 . 2 240,291 0,283 -chrXV 797962 798695 HC_gene_8189_tx_28 5 + 797962 798695 . 1 734 0 -chrXV 798516 800742 HC_gene_8633_tx_1 1 - 798516 800742 . 1 2227 0 -chrXV 798618 800742 HC_gene_8633_tx_2 6 - 798618 800742 . 1 2125 0 -chrXV 800944 802351 HC_gene_8634_tx_1 21 - 800944 802351 . 1 1408 0 -chrXV 800944 802351 HC_gene_8634_tx_2 1 - 800944 802351 . 2 706,509 0,899 -chrXV 802454 803410 HC_gene_8635_tx_1 7 - 802454 803410 . 1 957 0 -chrXV 802454 803488 HC_gene_8635_tx_2 110 - 802454 803488 . 1 1035 0 -chrXV 802525 803008 LC_gene_8190_tx_1 1 + 802525 803008 . 1 484 0 -chrXV 803634 804305 HC_gene_8191_tx_1 123 + 803634 804305 . 1 672 0 -chrXV 803634 804305 HC_gene_8191_tx_2 1 + 803634 804305 . 2 562,52 0,620 -chrXV 803634 804305 HC_gene_8191_tx_3 1 + 803634 804305 . 2 573,52 0,620 -chrXV 803747 804305 HC_gene_8191_tx_4 16 + 803747 804305 . 1 559 0 -chrXV 803817 804305 HC_gene_8191_tx_5 11 + 803817 804305 . 1 489 0 -chrXV 804201 804875 MC_gene_8636_tx_1 1 - 804201 804875 . 1 675 0 -chrXV 804357 804935 HC_gene_8192_tx_1 17 + 804357 804935 . 1 579 0 -chrXV 804357 805028 HC_gene_8192_tx_2 155 + 804357 805028 . 1 672 0 -chrXV 804357 805104 HC_gene_8192_tx_3 1 + 804357 805104 . 1 748 0 -chrXV 804593 804935 HC_gene_8192_tx_4 1 + 804593 804935 . 1 343 0 -chrXV 804593 805028 HC_gene_8192_tx_5 21 + 804593 805028 . 1 436 0 -chrXV 804912 805491 HC_gene_8637_tx_1 20 - 804912 805491 . 1 580 0 -chrXV 804912 805882 HC_gene_8637_tx_2 11 - 804912 805882 . 1 971 0 -chrXV 804912 806267 HC_gene_8637_tx_3 8 - 804912 806267 . 1 1356 0 -chrXV 804912 806352 HC_gene_8637_tx_4 4 - 804912 806352 . 1 1441 0 -chrXV 804912 806950 HC_gene_8637_tx_5 10 - 804912 806950 . 1 2039 0 -chrXV 804912 806950 HC_gene_8637_tx_6 1 - 804912 806950 . 2 1708,218 0,1821 -chrXV 804912 807044 HC_gene_8637_tx_7 63 - 804912 807044 . 1 2133 0 -chrXV 804912 807044 HC_gene_8637_tx_8 1 - 804912 807044 . 2 961,1124 0,1009 -chrXV 804912 807044 HC_gene_8637_tx_9 1 - 804912 807044 . 2 1029,967 0,1166 -chrXV 804912 807044 HC_gene_8637_tx_10 1 - 804912 807044 . 2 709,1336 0,797 -chrXV 808183 809470 HC_gene_8638_tx_1 2 - 808183 809470 . 1 1288 0 -chrXV 808183 809521 HC_gene_8638_tx_2 1 - 808183 809521 . 2 526,503 0,836 -chrXV 808183 810848 HC_gene_8638_tx_3 17 - 808183 810848 . 1 2666 0 -chrXV 810973 811561 HC_gene_8193_tx_1 146 + 810973 811561 . 1 589 0 -chrXV 810973 811561 HC_gene_8193_tx_2 1 + 810973 811561 . 2 110,345 0,244 -chrXV 810973 811561 HC_gene_8193_tx_3 1 + 810973 811561 . 2 63,449 0,140 -chrXV 810978 811561 HC_gene_8193_tx_4 1 + 810978 811561 . 2 113,412 0,172 -chrXV 811089 811561 HC_gene_8193_tx_5 7 + 811089 811561 . 1 473 0 -chrXV 811165 811561 HC_gene_8193_tx_6 20 + 811165 811561 . 1 397 0 -chrXV 811265 811561 HC_gene_8193_tx_7 34 + 811265 811561 . 1 297 0 -chrXV 811445 811841 HC_gene_8639_tx_1 3 - 811445 811841 . 1 397 0 -chrXV 811662 812298 HC_gene_8194_tx_1 1 + 811662 812298 . 1 637 0 -chrXV 811662 812302 HC_gene_8194_tx_2 1 + 811662 812302 . 1 641 0 -chrXV 811662 812308 HC_gene_8194_tx_3 1 + 811662 812308 . 1 647 0 -chrXV 811662 812333 HC_gene_8194_tx_4 2 + 811662 812333 . 1 672 0 -chrXV 811662 812414 HC_gene_8194_tx_5 18 + 811662 812414 . 1 753 0 -chrXV 811662 813395 HC_gene_8194_tx_6 1 + 811662 813395 . 1 1734 0 -chrXV 811955 813738 HC_gene_8640_tx_1 3 - 811955 813738 . 1 1784 0 -chrXV 812177 812592 HC_gene_8640_tx_17 5 - 812177 812592 . 1 416 0 -chrXV 812177 812790 HC_gene_8640_tx_18 8 - 812177 812790 . 1 614 0 -chrXV 812177 812937 HC_gene_8640_tx_19 2 - 812177 812937 . 1 761 0 -chrXV 812177 813008 HC_gene_8640_tx_20 4 - 812177 813008 . 1 832 0 -chrXV 812177 813059 HC_gene_8640_tx_21 2 - 812177 813059 . 1 883 0 -chrXV 812177 813279 HC_gene_8640_tx_22 3 - 812177 813279 . 1 1103 0 -chrXV 812177 813337 HC_gene_8640_tx_23 1 - 812177 813337 . 1 1161 0 -chrXV 812177 813738 HC_gene_8640_tx_2 23 - 812177 813738 . 1 1562 0 -chrXV 812177 813738 HC_gene_8640_tx_3 1 - 812177 813738 . 2 572,892 0,670 -chrXV 812177 813738 HC_gene_8640_tx_4 1 - 812177 813738 . 2 691,768 0,794 -chrXV 812177 813738 HC_gene_8640_tx_5 1 - 812177 813738 . 2 162,876 0,686 -chrXV 812317 812592 HC_gene_8640_tx_44 5 - 812317 812592 . 1 276 0 -chrXV 812317 812790 HC_gene_8640_tx_47 2 - 812317 812790 . 1 474 0 -chrXV 812317 812937 HC_gene_8640_tx_24 3 - 812317 812937 . 1 621 0 -chrXV 812317 813008 HC_gene_8640_tx_25 2 - 812317 813008 . 1 692 0 -chrXV 812317 813059 HC_gene_8640_tx_26 2 - 812317 813059 . 1 743 0 -chrXV 812317 813279 HC_gene_8640_tx_27 3 - 812317 813279 . 1 963 0 -chrXV 812317 813337 HC_gene_8640_tx_28 1 - 812317 813337 . 1 1021 0 -chrXV 812317 813738 HC_gene_8640_tx_6 22 - 812317 813738 . 1 1422 0 -chrXV 812317 813738 HC_gene_8640_tx_7 1 - 812317 813738 . 2 559,799 0,623 -chrXV 812318 813738 HC_gene_8640_tx_8 2 - 812318 813738 . 1 1421 0 -chrXV 812319 813279 HC_gene_8640_tx_29 1 - 812319 813279 . 1 961 0 -chrXV 812319 813738 HC_gene_8640_tx_9 2 - 812319 813738 . 1 1420 0 -chrXV 812320 813337 HC_gene_8640_tx_30 1 - 812320 813337 . 1 1018 0 -chrXV 812320 813738 HC_gene_8640_tx_10 4 - 812320 813738 . 1 1419 0 -chrXV 812321 812592 HC_gene_8640_tx_45 1 - 812321 812592 . 1 272 0 -chrXV 812321 812790 HC_gene_8640_tx_48 1 - 812321 812790 . 1 470 0 -chrXV 812321 812937 HC_gene_8640_tx_31 1 - 812321 812937 . 1 617 0 -chrXV 812321 813738 HC_gene_8640_tx_11 6 - 812321 813738 . 1 1418 0 -chrXV 812321 813738 HC_gene_8640_tx_12 1 - 812321 813738 . 2 458,700 0,718 -chrXV 812322 812592 HC_gene_8640_tx_46 3 - 812322 812592 . 1 271 0 -chrXV 812322 812790 HC_gene_8640_tx_49 5 - 812322 812790 . 1 469 0 -chrXV 812322 812937 HC_gene_8640_tx_32 3 - 812322 812937 . 1 616 0 -chrXV 812322 813008 HC_gene_8640_tx_33 3 - 812322 813008 . 1 687 0 -chrXV 812322 813059 HC_gene_8640_tx_34 5 - 812322 813059 . 1 738 0 -chrXV 812322 813279 HC_gene_8640_tx_35 3 - 812322 813279 . 1 958 0 -chrXV 812322 813337 HC_gene_8640_tx_36 2 - 812322 813337 . 1 1016 0 -chrXV 812322 813738 HC_gene_8640_tx_13 32 - 812322 813738 . 1 1417 0 -chrXV 812322 813738 HC_gene_8640_tx_14 1 - 812322 813738 . 2 564,759 0,658 -chrXV 812324 812790 HC_gene_8640_tx_50 1 - 812324 812790 . 1 467 0 -chrXV 812324 813738 HC_gene_8640_tx_15 3 - 812324 813738 . 1 1415 0 -chrXV 812325 812790 HC_gene_8640_tx_51 1 - 812325 812790 . 1 466 0 -chrXV 812325 812937 HC_gene_8640_tx_37 1 - 812325 812937 . 1 613 0 -chrXV 812325 813059 HC_gene_8640_tx_38 1 - 812325 813059 . 1 735 0 -chrXV 812325 813337 HC_gene_8640_tx_39 1 - 812325 813337 . 1 1013 0 -chrXV 812325 813738 HC_gene_8640_tx_16 4 - 812325 813738 . 1 1414 0 -chrXV 812326 813279 HC_gene_8640_tx_40 1 - 812326 813279 . 1 954 0 -chrXV 812327 812937 HC_gene_8640_tx_41 1 - 812327 812937 . 1 611 0 -chrXV 812327 813008 HC_gene_8640_tx_42 1 - 812327 813008 . 1 682 0 -chrXV 812327 813059 HC_gene_8640_tx_43 1 - 812327 813059 . 1 733 0 -chrXV 813932 815785 HC_gene_8195_tx_1 1 + 813932 815785 . 1 1854 0 -chrXV 813932 815793 HC_gene_8195_tx_2 1 + 813932 815793 . 1 1862 0 -chrXV 813932 815796 HC_gene_8195_tx_3 1 + 813932 815796 . 1 1865 0 -chrXV 813932 815801 HC_gene_8195_tx_4 1 + 813932 815801 . 1 1870 0 -chrXV 813932 815804 HC_gene_8195_tx_5 1 + 813932 815804 . 1 1873 0 -chrXV 813932 815805 HC_gene_8195_tx_6 1 + 813932 815805 . 1 1874 0 -chrXV 813932 815807 HC_gene_8195_tx_7 1 + 813932 815807 . 1 1876 0 -chrXV 813932 815809 HC_gene_8195_tx_8 1 + 813932 815809 . 1 1878 0 -chrXV 813932 815820 HC_gene_8195_tx_9 1 + 813932 815820 . 2 1042,772 0,1117 -chrXV 813932 815820 HC_gene_8195_tx_10 1 + 813932 815820 . 1 1889 0 -chrXV 813932 815824 HC_gene_8195_tx_11 1 + 813932 815824 . 1 1893 0 -chrXV 813932 815832 HC_gene_8195_tx_12 1 + 813932 815832 . 1 1901 0 -chrXV 813932 815835 HC_gene_8195_tx_13 1 + 813932 815835 . 1 1904 0 -chrXV 813932 815844 HC_gene_8195_tx_14 1 + 813932 815844 . 1 1913 0 -chrXV 813932 815847 HC_gene_8195_tx_15 1 + 813932 815847 . 1 1916 0 -chrXV 813932 815852 HC_gene_8195_tx_16 3 + 813932 815852 . 1 1921 0 -chrXV 813932 815853 HC_gene_8195_tx_17 1 + 813932 815853 . 1 1922 0 -chrXV 813932 815859 HC_gene_8195_tx_18 1 + 813932 815859 . 1 1928 0 -chrXV 813932 815860 HC_gene_8195_tx_19 1 + 813932 815860 . 2 1016,860 0,1069 -chrXV 813932 815861 HC_gene_8195_tx_20 1 + 813932 815861 . 1 1930 0 -chrXV 813932 815862 HC_gene_8195_tx_21 2 + 813932 815862 . 1 1931 0 -chrXV 813932 815865 HC_gene_8195_tx_22 1 + 813932 815865 . 1 1934 0 -chrXV 813932 815873 HC_gene_8195_tx_23 1 + 813932 815873 . 1 1942 0 -chrXV 813932 815881 HC_gene_8195_tx_24 3 + 813932 815881 . 1 1950 0 -chrXV 813932 815885 HC_gene_8195_tx_25 1 + 813932 815885 . 1 1954 0 -chrXV 813932 815890 HC_gene_8195_tx_26 1 + 813932 815890 . 1 1959 0 -chrXV 813932 815891 HC_gene_8195_tx_27 1 + 813932 815891 . 1 1960 0 -chrXV 813932 815904 HC_gene_8195_tx_28 1 + 813932 815904 . 1 1973 0 -chrXV 813932 815905 HC_gene_8195_tx_29 1 + 813932 815905 . 1 1974 0 -chrXV 813932 815910 HC_gene_8195_tx_30 1 + 813932 815910 . 2 1028,845 0,1134 -chrXV 813932 815910 HC_gene_8195_tx_31 1 + 813932 815910 . 1 1979 0 -chrXV 813932 815916 HC_gene_8195_tx_32 1 + 813932 815916 . 1 1985 0 -chrXV 813932 815918 HC_gene_8195_tx_33 3 + 813932 815918 . 1 1987 0 -chrXV 813932 815919 HC_gene_8195_tx_34 1 + 813932 815919 . 1 1988 0 -chrXV 813932 815921 HC_gene_8195_tx_35 3 + 813932 815921 . 1 1990 0 -chrXV 813932 815922 HC_gene_8195_tx_36 1 + 813932 815922 . 1 1991 0 -chrXV 813932 815930 HC_gene_8195_tx_37 1 + 813932 815930 . 1 1999 0 -chrXV 813932 816186 HC_gene_8195_tx_38 2 + 813932 816186 . 1 2255 0 -chrXV 814479 815785 HC_gene_8195_tx_39 1 + 814479 815785 . 1 1307 0 -chrXV 814479 815805 HC_gene_8195_tx_40 1 + 814479 815805 . 1 1327 0 -chrXV 814479 815811 HC_gene_8195_tx_41 1 + 814479 815811 . 1 1333 0 -chrXV 814479 815836 HC_gene_8195_tx_42 1 + 814479 815836 . 1 1358 0 -chrXV 814479 815847 HC_gene_8195_tx_43 1 + 814479 815847 . 1 1369 0 -chrXV 814479 815881 HC_gene_8195_tx_44 1 + 814479 815881 . 1 1403 0 -chrXV 814479 815918 HC_gene_8195_tx_45 1 + 814479 815918 . 1 1440 0 -chrXV 814479 816186 HC_gene_8195_tx_46 1 + 814479 816186 . 1 1708 0 -chrXV 815494 815793 HC_gene_8195_tx_47 1 + 815494 815793 . 1 300 0 -chrXV 815494 815795 HC_gene_8195_tx_48 1 + 815494 815795 . 1 302 0 -chrXV 815494 815803 HC_gene_8195_tx_49 1 + 815494 815803 . 1 310 0 -chrXV 815494 815813 HC_gene_8195_tx_50 1 + 815494 815813 . 1 320 0 -chrXV 815494 815815 HC_gene_8195_tx_51 2 + 815494 815815 . 1 322 0 -chrXV 815494 815823 HC_gene_8195_tx_52 1 + 815494 815823 . 1 330 0 -chrXV 815494 815845 HC_gene_8195_tx_53 2 + 815494 815845 . 1 352 0 -chrXV 815494 815848 HC_gene_8195_tx_54 1 + 815494 815848 . 1 355 0 -chrXV 815494 815862 HC_gene_8195_tx_55 1 + 815494 815862 . 1 369 0 -chrXV 815494 815865 HC_gene_8195_tx_56 1 + 815494 815865 . 1 372 0 -chrXV 815494 815873 HC_gene_8195_tx_57 1 + 815494 815873 . 1 380 0 -chrXV 815494 815881 HC_gene_8195_tx_58 1 + 815494 815881 . 1 388 0 -chrXV 815494 815883 HC_gene_8195_tx_59 1 + 815494 815883 . 1 390 0 -chrXV 815494 815889 HC_gene_8195_tx_60 1 + 815494 815889 . 1 396 0 -chrXV 815494 815896 HC_gene_8195_tx_61 1 + 815494 815896 . 1 403 0 -chrXV 815494 815897 HC_gene_8195_tx_62 1 + 815494 815897 . 1 404 0 -chrXV 815494 815904 HC_gene_8195_tx_63 2 + 815494 815904 . 1 411 0 -chrXV 815494 815906 HC_gene_8195_tx_64 2 + 815494 815906 . 1 413 0 -chrXV 815494 815911 HC_gene_8195_tx_65 1 + 815494 815911 . 1 418 0 -chrXV 815494 815916 HC_gene_8195_tx_66 1 + 815494 815916 . 1 423 0 -chrXV 815494 815918 HC_gene_8195_tx_67 1 + 815494 815918 . 1 425 0 -chrXV 815494 815919 HC_gene_8195_tx_68 1 + 815494 815919 . 1 426 0 -chrXV 815494 815921 HC_gene_8195_tx_69 1 + 815494 815921 . 1 428 0 -chrXV 815494 815922 HC_gene_8195_tx_70 1 + 815494 815922 . 1 429 0 -chrXV 815494 815939 HC_gene_8195_tx_71 1 + 815494 815939 . 1 446 0 -chrXV 815691 817049 HC_gene_8641_tx_1 2 - 815691 817049 . 1 1359 0 -chrXV 815774 816252 HC_gene_8641_tx_4 35 - 815774 816252 . 1 479 0 -chrXV 815774 816379 HC_gene_8641_tx_5 24 - 815774 816379 . 1 606 0 -chrXV 815774 816444 HC_gene_8641_tx_6 12 - 815774 816444 . 1 671 0 -chrXV 815774 816834 HC_gene_8641_tx_2 19 - 815774 816834 . 1 1061 0 -chrXV 815774 817049 HC_gene_8641_tx_3 199 - 815774 817049 . 1 1276 0 -chrXV 817229 818449 HC_gene_8196_tx_1 62 + 817229 818449 . 1 1221 0 -chrXV 817229 818449 HC_gene_8196_tx_2 1 + 817229 818449 . 2 393,771 0,450 -chrXV 817229 818449 HC_gene_8196_tx_3 1 + 817229 818449 . 2 600,518 0,703 -chrXV 817229 818449 HC_gene_8196_tx_4 1 + 817229 818449 . 2 488,642 0,579 -chrXV 818006 818449 HC_gene_8196_tx_5 18 + 818006 818449 . 1 444 0 -chrXV 818033 818285 LC_gene_8642_tx_1 1 - 818033 818285 . 1 253 0 -chrXV 818642 820197 HC_gene_8197_tx_1 1 + 818642 820197 . 1 1556 0 -chrXV 818642 820214 HC_gene_8197_tx_2 1 + 818642 820214 . 1 1573 0 -chrXV 818642 820256 HC_gene_8197_tx_3 1 + 818642 820256 . 1 1615 0 -chrXV 818642 820293 HC_gene_8197_tx_4 1 + 818642 820293 . 1 1652 0 -chrXV 818642 820294 HC_gene_8197_tx_5 1 + 818642 820294 . 1 1653 0 -chrXV 818642 820346 HC_gene_8197_tx_6 1 + 818642 820346 . 1 1705 0 -chrXV 818718 820332 HC_gene_8197_tx_7 1 + 818718 820332 . 1 1615 0 -chrXV 818718 820355 HC_gene_8197_tx_8 1 + 818718 820355 . 1 1638 0 -chrXV 818807 820010 HC_gene_8197_tx_9 1 + 818807 820010 . 1 1204 0 -chrXV 818807 820011 HC_gene_8197_tx_10 1 + 818807 820011 . 1 1205 0 -chrXV 818807 820021 HC_gene_8197_tx_11 1 + 818807 820021 . 1 1215 0 -chrXV 818807 820187 HC_gene_8197_tx_12 1 + 818807 820187 . 1 1381 0 -chrXV 818807 820206 HC_gene_8197_tx_13 1 + 818807 820206 . 1 1400 0 -chrXV 818807 820207 HC_gene_8197_tx_14 1 + 818807 820207 . 1 1401 0 -chrXV 818807 820215 HC_gene_8197_tx_15 1 + 818807 820215 . 1 1409 0 -chrXV 818807 820217 HC_gene_8197_tx_16 1 + 818807 820217 . 1 1411 0 -chrXV 818807 820222 HC_gene_8197_tx_17 1 + 818807 820222 . 1 1416 0 -chrXV 818807 820223 HC_gene_8197_tx_18 1 + 818807 820223 . 1 1417 0 -chrXV 818807 820224 HC_gene_8197_tx_19 1 + 818807 820224 . 1 1418 0 -chrXV 818807 820228 HC_gene_8197_tx_20 3 + 818807 820228 . 1 1422 0 -chrXV 818807 820228 HC_gene_8197_tx_21 1 + 818807 820228 . 2 273,1028 0,394 -chrXV 818807 820235 HC_gene_8197_tx_22 2 + 818807 820235 . 1 1429 0 -chrXV 818807 820241 HC_gene_8197_tx_23 1 + 818807 820241 . 1 1435 0 -chrXV 818807 820248 HC_gene_8197_tx_24 1 + 818807 820248 . 1 1442 0 -chrXV 818807 820249 HC_gene_8197_tx_25 1 + 818807 820249 . 1 1443 0 -chrXV 818807 820253 HC_gene_8197_tx_26 1 + 818807 820253 . 1 1447 0 -chrXV 818807 820263 HC_gene_8197_tx_27 1 + 818807 820263 . 1 1457 0 -chrXV 818807 820287 HC_gene_8197_tx_28 1 + 818807 820287 . 1 1481 0 -chrXV 818807 820294 HC_gene_8197_tx_29 1 + 818807 820294 . 1 1488 0 -chrXV 818807 820295 HC_gene_8197_tx_30 3 + 818807 820295 . 1 1489 0 -chrXV 818807 820330 HC_gene_8197_tx_31 1 + 818807 820330 . 1 1524 0 -chrXV 818807 820333 HC_gene_8197_tx_32 1 + 818807 820333 . 1 1527 0 -chrXV 818807 820334 HC_gene_8197_tx_33 1 + 818807 820334 . 2 167,1258 0,270 -chrXV 818807 820334 HC_gene_8197_tx_34 1 + 818807 820334 . 1 1528 0 -chrXV 818807 820341 HC_gene_8197_tx_35 1 + 818807 820341 . 1 1535 0 -chrXV 818807 820343 HC_gene_8197_tx_36 3 + 818807 820343 . 1 1537 0 -chrXV 818807 820346 HC_gene_8197_tx_37 1 + 818807 820346 . 1 1540 0 -chrXV 818807 820353 HC_gene_8197_tx_38 1 + 818807 820353 . 1 1547 0 -chrXV 818807 820355 HC_gene_8197_tx_39 1 + 818807 820355 . 1 1549 0 -chrXV 818807 820806 HC_gene_8197_tx_46 2 + 818807 820806 . 1 2000 0 -chrXV 818819 820271 HC_gene_8197_tx_40 1 + 818819 820271 . 1 1453 0 -chrXV 818827 820274 HC_gene_8197_tx_41 2 + 818827 820274 . 1 1448 0 -chrXV 818828 820275 HC_gene_8197_tx_42 1 + 818828 820275 . 1 1448 0 -chrXV 818836 820274 HC_gene_8197_tx_43 1 + 818836 820274 . 1 1439 0 -chrXV 818841 820271 HC_gene_8197_tx_44 1 + 818841 820271 . 1 1431 0 -chrXV 818863 820273 HC_gene_8197_tx_45 1 + 818863 820273 . 1 1411 0 -chrXV 819117 820017 HC_gene_8197_tx_47 1 + 819117 820017 . 1 901 0 -chrXV 819117 820207 HC_gene_8197_tx_48 1 + 819117 820207 . 1 1091 0 -chrXV 819117 820224 HC_gene_8197_tx_49 1 + 819117 820224 . 2 731,332 0,776 -chrXV 819117 820233 HC_gene_8197_tx_50 1 + 819117 820233 . 1 1117 0 -chrXV 819117 820344 HC_gene_8197_tx_51 1 + 819117 820344 . 1 1228 0 -chrXV 820265 820746 LC_gene_8643_tx_1 1 - 820265 820746 . 1 482 0 -chrXV 820267 820806 HC_gene_8197_tx_52 1 + 820267 820806 . 1 540 0 -chrXV 820267 821034 HC_gene_8197_tx_53 2 + 820267 821034 . 1 768 0 -chrXV 820420 820806 HC_gene_8197_tx_62 72 + 820420 820806 . 1 387 0 -chrXV 820420 820806 HC_gene_8197_tx_63 1 + 820420 820806 . 2 142,166 0,221 -chrXV 820420 821034 HC_gene_8197_tx_54 181 + 820420 821034 . 1 615 0 -chrXV 820420 821034 HC_gene_8197_tx_55 1 + 820420 821034 . 2 79,430 0,185 -chrXV 820435 821034 HC_gene_8197_tx_56 1 + 820435 821034 . 1 600 0 -chrXV 820440 821034 HC_gene_8197_tx_57 1 + 820440 821034 . 1 595 0 -chrXV 820449 821034 HC_gene_8197_tx_58 2 + 820449 821034 . 1 586 0 -chrXV 820452 821034 HC_gene_8197_tx_59 1 + 820452 821034 . 1 583 0 -chrXV 820453 821034 HC_gene_8197_tx_60 1 + 820453 821034 . 1 582 0 -chrXV 820510 821034 HC_gene_8197_tx_61 10 + 820510 821034 . 1 525 0 -chrXV 820927 821339 HC_gene_8644_tx_1 3 - 820927 821339 . 1 413 0 -chrXV 820997 822356 HC_gene_8198_tx_1 17 + 820997 822356 . 1 1360 0 -chrXV 820997 822465 HC_gene_8198_tx_2 1 + 820997 822465 . 1 1469 0 -chrXV 822390 823019 HC_gene_8645_tx_1 46 - 822390 823019 . 1 630 0 -chrXV 822390 823366 HC_gene_8645_tx_2 17 - 822390 823366 . 1 977 0 -chrXV 822390 823476 HC_gene_8645_tx_3 16 - 822390 823476 . 1 1087 0 -chrXV 822390 823476 HC_gene_8645_tx_4 1 - 822390 823476 . 2 887,136 0,951 -chrXV 822390 824484 HC_gene_8645_tx_5 1 - 822390 824484 . 2 594,706 0,1389 -chrXV 822390 824484 HC_gene_8645_tx_6 1 - 822390 824484 . 2 1333,653 0,1442 -chrXV 822390 824708 HC_gene_8645_tx_7 4 - 822390 824708 . 1 2319 0 -chrXV 822390 825025 HC_gene_8645_tx_8 23 - 822390 825025 . 1 2636 0 -chrXV 822390 825025 HC_gene_8645_tx_9 1 - 822390 825025 . 2 1425,940 0,1696 -chrXV 822390 825025 HC_gene_8645_tx_10 1 - 822390 825025 . 2 1090,694 0,1942 -chrXV 822390 825030 HC_gene_8645_tx_11 1 - 822390 825030 . 2 2224,329 0,2312 -chrXV 822390 825061 HC_gene_8645_tx_12 1 - 822390 825061 . 2 1756,360 0,2312 -chrXV 822390 825282 HC_gene_8645_tx_13 1 - 822390 825282 . 2 829,1961 0,932 -chrXV 822390 825282 HC_gene_8645_tx_14 3 - 822390 825282 . 1 2893 0 -chrXV 822390 825432 HC_gene_8645_tx_15 1 - 822390 825432 . 1 3043 0 -chrXV 822390 825432 HC_gene_8645_tx_16 1 - 822390 825432 . 2 1150,1619 0,1424 -chrXV 824541 824915 MC_gene_8199_tx_1 1 + 824541 824915 . 1 375 0 -chrXV 825271 825443 MC_gene_8200_tx_1 1 + 825271 825443 . 1 173 0 -chrXV 826308 827802 HC_gene_8201_tx_1 1 + 826308 827802 . 1 1495 0 -chrXV 826308 828040 HC_gene_8201_tx_2 5 + 826308 828040 . 1 1733 0 -chrXV 826432 828040 HC_gene_8201_tx_3 1 + 826432 828040 . 1 1609 0 -chrXV 826649 830736 HC_gene_8646_tx_1 1 - 826649 830736 . 1 4088 0 -chrXV 827923 828654 HC_gene_8646_tx_2 34 - 827923 828654 . 1 732 0 -chrXV 827923 828771 HC_gene_8646_tx_3 33 - 827923 828771 . 1 849 0 -chrXV 827923 828944 HC_gene_8646_tx_4 23 - 827923 828944 . 1 1022 0 -chrXV 827923 829041 HC_gene_8646_tx_5 30 - 827923 829041 . 1 1119 0 -chrXV 827923 829770 HC_gene_8646_tx_6 17 - 827923 829770 . 1 1848 0 -chrXV 827923 829890 HC_gene_8646_tx_7 14 - 827923 829890 . 1 1968 0 -chrXV 827923 830056 HC_gene_8646_tx_8 12 - 827923 830056 . 1 2134 0 -chrXV 827923 830111 HC_gene_8646_tx_9 7 - 827923 830111 . 1 2189 0 -chrXV 827923 830111 HC_gene_8646_tx_10 1 - 827923 830111 . 2 975,1131 0,1058 -chrXV 827923 830318 HC_gene_8646_tx_11 1 - 827923 830318 . 2 951,1330 0,1066 -chrXV 827923 830318 HC_gene_8646_tx_12 12 - 827923 830318 . 1 2396 0 -chrXV 827923 830318 HC_gene_8646_tx_13 1 - 827923 830318 . 2 955,1330 0,1066 -chrXV 827923 830318 HC_gene_8646_tx_14 1 - 827923 830318 . 2 1114,1218 0,1178 -chrXV 827923 830465 HC_gene_8646_tx_15 15 - 827923 830465 . 1 2543 0 -chrXV 827923 830465 HC_gene_8646_tx_16 1 - 827923 830465 . 2 1097,1398 0,1145 -chrXV 827923 830570 HC_gene_8646_tx_17 4 - 827923 830570 . 1 2648 0 -chrXV 827923 830736 HC_gene_8646_tx_18 127 - 827923 830736 . 1 2814 0 -chrXV 827923 830736 HC_gene_8646_tx_19 1 - 827923 830736 . 2 1449,1088 0,1726 -chrXV 827923 830736 HC_gene_8646_tx_20 1 - 827923 830736 . 2 1998,768 0,2046 -chrXV 827923 830736 HC_gene_8646_tx_21 1 - 827923 830736 . 2 1195,1435 0,1379 -chrXV 830923 831417 HC_gene_8647_tx_1 31 - 830923 831417 . 1 495 0 -chrXV 830923 831976 HC_gene_8647_tx_2 9 - 830923 831976 . 1 1054 0 -chrXV 830923 832112 HC_gene_8647_tx_3 142 - 830923 832112 . 1 1190 0 -chrXV 831137 832293 LC_gene_8202_tx_1 1 + 831137 832293 . 1 1157 0 -chrXV 832332 832587 HC_gene_8203_tx_1 33 + 832332 832587 . 1 256 0 -chrXV 832789 834277 HC_gene_8204_tx_1 75 + 832789 834277 . 1 1489 0 -chrXV 832789 834444 HC_gene_8204_tx_2 1 + 832789 834444 . 1 1656 0 -chrXV 833203 834277 HC_gene_8204_tx_3 10 + 833203 834277 . 1 1075 0 -chrXV 833655 834090 LC_gene_8648_tx_1 1 - 833655 834090 . 1 436 0 -chrXV 834183 836516 MC_gene_8649_tx_1 1 - 834183 836516 . 1 2334 0 -chrXV 834234 835073 MC_gene_8649_tx_6 1 - 834234 835073 . 1 840 0 -chrXV 834238 835917 MC_gene_8649_tx_2 1 - 834238 835917 . 1 1680 0 -chrXV 834257 835697 MC_gene_8649_tx_3 1 - 834257 835697 . 1 1441 0 -chrXV 834285 836220 MC_gene_8649_tx_4 1 - 834285 836220 . 1 1936 0 -chrXV 834291 836389 MC_gene_8649_tx_5 1 - 834291 836389 . 1 2099 0 -chrXV 834323 835374 MC_gene_8649_tx_7 1 - 834323 835374 . 1 1052 0 -chrXV 836251 836630 MC_gene_8650_tx_1 1 - 836251 836630 . 1 380 0 -chrXV 836351 837039 MC_gene_8651_tx_1 1 - 836351 837039 . 1 689 0 -chrXV 837083 837694 HC_gene_8205_tx_1 12 + 837083 837694 . 1 612 0 -chrXV 837239 837694 HC_gene_8205_tx_2 1 + 837239 837694 . 1 456 0 -chrXV 837276 837694 HC_gene_8205_tx_3 6 + 837276 837694 . 1 419 0 -chrXV 837383 837694 HC_gene_8205_tx_4 1 + 837383 837694 . 1 312 0 -chrXV 837475 837694 HC_gene_8205_tx_5 4 + 837475 837694 . 1 220 0 -chrXV 837599 838148 HC_gene_8652_tx_1 10 - 837599 838148 . 1 550 0 -chrXV 837673 839120 HC_gene_8206_tx_1 16 + 837673 839120 . 1 1448 0 -chrXV 837673 839222 HC_gene_8206_tx_2 7 + 837673 839222 . 1 1550 0 -chrXV 837673 839222 HC_gene_8206_tx_3 1 + 837673 839222 . 2 62,1402 0,148 -chrXV 837673 839460 HC_gene_8206_tx_4 3 + 837673 839460 . 1 1788 0 -chrXV 837785 838148 HC_gene_8652_tx_2 4 - 837785 838148 . 1 364 0 -chrXV 837900 839120 HC_gene_8206_tx_5 4 + 837900 839120 . 1 1221 0 -chrXV 837900 839222 HC_gene_8206_tx_6 1 + 837900 839222 . 1 1323 0 -chrXV 837979 839120 HC_gene_8206_tx_7 2 + 837979 839120 . 1 1142 0 -chrXV 838302 839120 HC_gene_8206_tx_8 12 + 838302 839120 . 1 819 0 -chrXV 838302 839222 HC_gene_8206_tx_9 5 + 838302 839222 . 1 921 0 -chrXV 838946 841078 HC_gene_8653_tx_1 12 - 838946 841078 . 1 2133 0 -chrXV 838946 841078 HC_gene_8653_tx_2 1 - 838946 841078 . 2 1595,363 0,1770 -chrXV 841272 841911 HC_gene_8207_tx_1 411 + 841272 841911 . 1 640 0 -chrXV 841272 841984 HC_gene_8207_tx_2 4 + 841272 841984 . 1 713 0 -chrXV 841281 842183 HC_gene_8654_tx_1 3 - 841281 842183 . 1 903 0 -chrXV 841842 842183 HC_gene_8654_tx_2 94 - 841842 842183 . 1 342 0 -chrXV 842403 842671 HC_gene_8208_tx_1 1 + 842403 842671 . 1 269 0 -chrXV 842403 842673 HC_gene_8208_tx_2 2 + 842403 842673 . 1 271 0 -chrXV 842403 842674 HC_gene_8208_tx_3 3 + 842403 842674 . 1 272 0 -chrXV 842403 842680 HC_gene_8208_tx_4 1 + 842403 842680 . 1 278 0 -chrXV 842403 842689 HC_gene_8208_tx_5 1 + 842403 842689 . 1 287 0 -chrXV 842403 842690 HC_gene_8208_tx_6 1 + 842403 842690 . 1 288 0 -chrXV 842811 843798 HC_gene_8209_tx_1 23 + 842811 843798 . 1 988 0 -chrXV 843624 844754 HC_gene_8655_tx_1 29 - 843624 844754 . 1 1131 0 -chrXV 843803 845010 MC_gene_8210_tx_1 1 + 843803 845010 . 1 1208 0 -chrXV 844795 845423 HC_gene_8656_tx_1 2 - 844795 845423 . 1 629 0 -chrXV 844795 845804 HC_gene_8656_tx_3 7 - 844795 845804 . 1 1010 0 -chrXV 844868 845423 HC_gene_8656_tx_2 9 - 844868 845423 . 1 556 0 -chrXV 844868 845804 HC_gene_8656_tx_4 80 - 844868 845804 . 1 937 0 -chrXV 844900 845131 MC_gene_8211_tx_1 1 + 844900 845131 . 1 232 0 -chrXV 844963 845760 MC_gene_8212_tx_1 1 + 844963 845760 . 1 798 0 -chrXV 846174 846546 HC_gene_8657_tx_1 27 - 846174 846546 . 1 373 0 -chrXV 846174 846735 HC_gene_8657_tx_2 28 - 846174 846735 . 1 562 0 -chrXV 846174 847050 HC_gene_8657_tx_3 14 - 846174 847050 . 1 877 0 -chrXV 846174 847050 HC_gene_8657_tx_4 1 - 846174 847050 . 2 545,289 0,588 -chrXV 846174 847136 HC_gene_8657_tx_5 1 - 846174 847136 . 2 399,418 0,545 -chrXV 846174 847158 HC_gene_8657_tx_6 126 - 846174 847158 . 1 985 0 -chrXV 846174 847158 HC_gene_8657_tx_7 1 - 846174 847158 . 2 754,59 0,926 -chrXV 846174 847158 HC_gene_8657_tx_8 1 - 846174 847158 . 2 368,563 0,422 -chrXV 846174 847158 HC_gene_8657_tx_9 1 - 846174 847158 . 2 462,323 0,662 -chrXV 846174 847158 HC_gene_8657_tx_10 1 - 846174 847158 . 2 823,108 0,877 -chrXV 846518 847142 HC_gene_8657_tx_11 1 - 846518 847142 . 1 625 0 -chrXV 846518 847156 HC_gene_8657_tx_12 1 - 846518 847156 . 1 639 0 -chrXV 847388 848313 HC_gene_8213_tx_1 178 + 847388 848313 . 1 926 0 -chrXV 847617 848313 HC_gene_8213_tx_2 33 + 847617 848313 . 1 697 0 -chrXV 847749 848313 HC_gene_8213_tx_3 18 + 847749 848313 . 1 565 0 -chrXV 848430 849495 HC_gene_8214_tx_1 1 + 848430 849495 . 1 1066 0 -chrXV 848430 849512 HC_gene_8214_tx_2 1 + 848430 849512 . 1 1083 0 -chrXV 848430 849517 HC_gene_8214_tx_3 1 + 848430 849517 . 1 1088 0 -chrXV 848430 849600 HC_gene_8214_tx_4 4 + 848430 849600 . 1 1171 0 -chrXV 848875 849413 HC_gene_8658_tx_1 3 - 848875 849413 . 1 539 0 -chrXV 848875 850059 HC_gene_8658_tx_2 2 - 848875 850059 . 1 1185 0 -chrXV 848987 849413 HC_gene_8658_tx_4 5 - 848987 849413 . 1 427 0 -chrXV 848987 850059 HC_gene_8658_tx_3 1 - 848987 850059 . 1 1073 0 -chrXV 849625 850109 HC_gene_8215_tx_1 19 + 849625 850109 . 1 485 0 -chrXV 849625 850110 HC_gene_8215_tx_2 6 + 849625 850110 . 1 486 0 -chrXV 849625 850111 HC_gene_8215_tx_3 8 + 849625 850111 . 1 487 0 -chrXV 849625 850112 HC_gene_8215_tx_4 21 + 849625 850112 . 1 488 0 -chrXV 849625 850113 HC_gene_8215_tx_5 13 + 849625 850113 . 1 489 0 -chrXV 849625 850114 HC_gene_8215_tx_6 20 + 849625 850114 . 1 490 0 -chrXV 849625 850115 HC_gene_8215_tx_7 66 + 849625 850115 . 1 491 0 -chrXV 849625 850116 HC_gene_8215_tx_8 20 + 849625 850116 . 1 492 0 -chrXV 849625 850117 HC_gene_8215_tx_9 12 + 849625 850117 . 1 493 0 -chrXV 849625 850118 HC_gene_8215_tx_10 60 + 849625 850118 . 1 494 0 -chrXV 849625 850119 HC_gene_8215_tx_11 11 + 849625 850119 . 1 495 0 -chrXV 849625 850120 HC_gene_8215_tx_12 13 + 849625 850120 . 1 496 0 -chrXV 849625 850120 HC_gene_8215_tx_13 1 + 849625 850120 . 2 162,289 0,207 -chrXV 849625 850121 HC_gene_8215_tx_14 26 + 849625 850121 . 1 497 0 -chrXV 849625 850122 HC_gene_8215_tx_15 2 + 849625 850122 . 1 498 0 -chrXV 849625 850123 HC_gene_8215_tx_16 98 + 849625 850123 . 1 499 0 -chrXV 849625 850124 HC_gene_8215_tx_17 2 + 849625 850124 . 1 500 0 -chrXV 849625 850125 HC_gene_8215_tx_18 30 + 849625 850125 . 1 501 0 -chrXV 849625 850126 HC_gene_8215_tx_19 3 + 849625 850126 . 1 502 0 -chrXV 849625 850127 HC_gene_8215_tx_20 2 + 849625 850127 . 1 503 0 -chrXV 849625 850128 HC_gene_8215_tx_21 1 + 849625 850128 . 1 504 0 -chrXV 849625 850129 HC_gene_8215_tx_22 14 + 849625 850129 . 1 505 0 -chrXV 849625 850130 HC_gene_8215_tx_23 6 + 849625 850130 . 1 506 0 -chrXV 849625 850131 HC_gene_8215_tx_24 2 + 849625 850131 . 1 507 0 -chrXV 849625 850132 HC_gene_8215_tx_25 11 + 849625 850132 . 1 508 0 -chrXV 849625 850135 HC_gene_8215_tx_26 3 + 849625 850135 . 1 511 0 -chrXV 849625 850136 HC_gene_8215_tx_27 9 + 849625 850136 . 1 512 0 -chrXV 849625 850140 HC_gene_8215_tx_28 2 + 849625 850140 . 1 516 0 -chrXV 849625 850143 HC_gene_8215_tx_29 2 + 849625 850143 . 1 519 0 -chrXV 849625 850144 HC_gene_8215_tx_30 3 + 849625 850144 . 1 520 0 -chrXV 849625 850145 HC_gene_8215_tx_31 1 + 849625 850145 . 1 521 0 -chrXV 849625 850149 HC_gene_8215_tx_32 4 + 849625 850149 . 1 525 0 -chrXV 849625 850153 HC_gene_8215_tx_33 2 + 849625 850153 . 1 529 0 -chrXV 849625 850154 HC_gene_8215_tx_34 1 + 849625 850154 . 1 530 0 -chrXV 849625 850155 HC_gene_8215_tx_35 2 + 849625 850155 . 1 531 0 -chrXV 849625 850156 HC_gene_8215_tx_36 1 + 849625 850156 . 1 532 0 -chrXV 849625 850159 HC_gene_8215_tx_37 1 + 849625 850159 . 1 535 0 -chrXV 849625 850160 HC_gene_8215_tx_38 2 + 849625 850160 . 1 536 0 -chrXV 849625 850162 HC_gene_8215_tx_39 2 + 849625 850162 . 1 538 0 -chrXV 849625 850167 HC_gene_8215_tx_40 1 + 849625 850167 . 1 543 0 -chrXV 849625 850168 HC_gene_8215_tx_41 4 + 849625 850168 . 1 544 0 -chrXV 849625 850169 HC_gene_8215_tx_42 1 + 849625 850169 . 1 545 0 -chrXV 849625 850174 HC_gene_8215_tx_43 2 + 849625 850174 . 1 550 0 -chrXV 849625 850175 HC_gene_8215_tx_44 1 + 849625 850175 . 1 551 0 -chrXV 849625 850178 HC_gene_8215_tx_45 1 + 849625 850178 . 1 554 0 -chrXV 849625 850180 HC_gene_8215_tx_46 5 + 849625 850180 . 1 556 0 -chrXV 849625 850181 HC_gene_8215_tx_47 2 + 849625 850181 . 1 557 0 -chrXV 849625 850187 HC_gene_8215_tx_48 1 + 849625 850187 . 1 563 0 -chrXV 849625 850189 HC_gene_8215_tx_49 1 + 849625 850189 . 1 565 0 -chrXV 849625 850192 HC_gene_8215_tx_50 2 + 849625 850192 . 1 568 0 -chrXV 849625 850193 HC_gene_8215_tx_51 3 + 849625 850193 . 1 569 0 -chrXV 849625 850194 HC_gene_8215_tx_52 3 + 849625 850194 . 1 570 0 -chrXV 849625 850195 HC_gene_8215_tx_53 2 + 849625 850195 . 1 571 0 -chrXV 849625 850200 HC_gene_8215_tx_54 1 + 849625 850200 . 1 576 0 -chrXV 849625 850201 HC_gene_8215_tx_55 1 + 849625 850201 . 1 577 0 -chrXV 849625 850203 HC_gene_8215_tx_56 1 + 849625 850203 . 1 579 0 -chrXV 849625 850206 HC_gene_8215_tx_57 1 + 849625 850206 . 1 582 0 -chrXV 849625 850207 HC_gene_8215_tx_58 1 + 849625 850207 . 1 583 0 -chrXV 849625 850208 HC_gene_8215_tx_59 2 + 849625 850208 . 1 584 0 -chrXV 849625 850213 HC_gene_8215_tx_60 4 + 849625 850213 . 1 589 0 -chrXV 849625 850215 HC_gene_8215_tx_61 2 + 849625 850215 . 1 591 0 -chrXV 849625 850219 HC_gene_8215_tx_62 1 + 849625 850219 . 1 595 0 -chrXV 849625 850220 HC_gene_8215_tx_63 3 + 849625 850220 . 1 596 0 -chrXV 849625 850224 HC_gene_8215_tx_64 4 + 849625 850224 . 1 600 0 -chrXV 849625 850225 HC_gene_8215_tx_65 1 + 849625 850225 . 1 601 0 -chrXV 849625 850226 HC_gene_8215_tx_66 1 + 849625 850226 . 1 602 0 -chrXV 849625 850227 HC_gene_8215_tx_67 4 + 849625 850227 . 1 603 0 -chrXV 849758 850109 HC_gene_8215_tx_68 2 + 849758 850109 . 1 352 0 -chrXV 849758 850110 HC_gene_8215_tx_69 1 + 849758 850110 . 1 353 0 -chrXV 849758 850111 HC_gene_8215_tx_70 1 + 849758 850111 . 1 354 0 -chrXV 849758 850112 HC_gene_8215_tx_71 1 + 849758 850112 . 1 355 0 -chrXV 849758 850113 HC_gene_8215_tx_72 1 + 849758 850113 . 1 356 0 -chrXV 849758 850114 HC_gene_8215_tx_73 1 + 849758 850114 . 1 357 0 -chrXV 849758 850115 HC_gene_8215_tx_74 3 + 849758 850115 . 1 358 0 -chrXV 849758 850116 HC_gene_8215_tx_75 2 + 849758 850116 . 1 359 0 -chrXV 849758 850118 HC_gene_8215_tx_76 8 + 849758 850118 . 1 361 0 -chrXV 849758 850120 HC_gene_8215_tx_77 1 + 849758 850120 . 1 363 0 -chrXV 849758 850121 HC_gene_8215_tx_78 1 + 849758 850121 . 1 364 0 -chrXV 849758 850123 HC_gene_8215_tx_79 13 + 849758 850123 . 1 366 0 -chrXV 849758 850124 HC_gene_8215_tx_80 1 + 849758 850124 . 1 367 0 -chrXV 849758 850125 HC_gene_8215_tx_81 3 + 849758 850125 . 1 368 0 -chrXV 849758 850136 HC_gene_8215_tx_82 3 + 849758 850136 . 1 379 0 -chrXV 849758 850146 HC_gene_8215_tx_83 1 + 849758 850146 . 1 389 0 -chrXV 849758 850157 HC_gene_8215_tx_84 2 + 849758 850157 . 1 400 0 -chrXV 849758 850200 HC_gene_8215_tx_85 1 + 849758 850200 . 1 443 0 -chrXV 849758 850224 HC_gene_8215_tx_86 1 + 849758 850224 . 1 467 0 -chrXV 849845 850114 HC_gene_8215_tx_87 1 + 849845 850114 . 1 270 0 -chrXV 849845 850118 HC_gene_8215_tx_88 1 + 849845 850118 . 1 274 0 -chrXV 849845 850122 HC_gene_8215_tx_89 1 + 849845 850122 . 1 278 0 -chrXV 849845 850123 HC_gene_8215_tx_90 4 + 849845 850123 . 1 279 0 -chrXV 849845 850124 HC_gene_8215_tx_91 1 + 849845 850124 . 1 280 0 -chrXV 849845 850125 HC_gene_8215_tx_92 1 + 849845 850125 . 1 281 0 -chrXV 849845 850167 HC_gene_8215_tx_93 1 + 849845 850167 . 1 323 0 -chrXV 849845 850173 HC_gene_8215_tx_94 1 + 849845 850173 . 1 329 0 -chrXV 849845 850193 HC_gene_8215_tx_95 1 + 849845 850193 . 1 349 0 -chrXV 849948 850118 HC_gene_8215_tx_96 1 + 849948 850118 . 1 171 0 -chrXV 849948 850123 HC_gene_8215_tx_97 2 + 849948 850123 . 1 176 0 -chrXV 849948 850125 HC_gene_8215_tx_98 1 + 849948 850125 . 1 178 0 -chrXV 849948 850137 HC_gene_8215_tx_99 1 + 849948 850137 . 1 190 0 -chrXV 849948 850149 HC_gene_8215_tx_100 1 + 849948 850149 . 1 202 0 -chrXV 849948 850174 HC_gene_8215_tx_101 1 + 849948 850174 . 1 227 0 -chrXV 849948 850175 HC_gene_8215_tx_102 1 + 849948 850175 . 1 228 0 -chrXV 849948 850178 HC_gene_8215_tx_103 1 + 849948 850178 . 1 231 0 -chrXV 849948 850194 HC_gene_8215_tx_104 1 + 849948 850194 . 1 247 0 -chrXV 849948 850195 HC_gene_8215_tx_105 1 + 849948 850195 . 1 248 0 -chrXV 850256 850818 HC_gene_8216_tx_1 150 + 850256 850818 . 1 563 0 -chrXV 850256 850932 HC_gene_8216_tx_2 124 + 850256 850932 . 1 677 0 -chrXV 850857 851872 HC_gene_8659_tx_1 72 - 850857 851872 . 1 1016 0 -chrXV 850857 851872 HC_gene_8659_tx_2 1 - 850857 851872 . 2 611,316 0,700 -chrXV 850857 851872 HC_gene_8659_tx_3 1 - 850857 851872 . 2 80,895 0,121 -chrXV 850857 851872 HC_gene_8659_tx_4 1 - 850857 851872 . 2 670,286 0,730 -chrXV 852036 853111 HC_gene_8660_tx_1 31 - 852036 853111 . 1 1076 0 -chrXV 852036 853111 HC_gene_8660_tx_2 1 - 852036 853111 . 2 678,225 0,851 -chrXV 852036 853902 HC_gene_8660_tx_3 2 - 852036 853902 . 1 1867 0 -chrXV 853042 853902 HC_gene_8661_tx_1 2 - 853042 853902 . 1 861 0 -chrXV 853042 854032 HC_gene_8661_tx_2 1 - 853042 854032 . 1 991 0 -chrXV 853364 854201 HC_gene_8217_tx_1 24 + 853364 854201 . 1 838 0 -chrXV 854478 854786 LC_gene_8662_tx_1 1 - 854478 854786 . 1 309 0 -chrXV 854499 854961 HC_gene_8218_tx_1 81 + 854499 854961 . 1 463 0 -chrXV 854499 855040 HC_gene_8218_tx_2 137 + 854499 855040 . 1 542 0 -chrXV 855078 856208 HC_gene_8663_tx_1 5 - 855078 856208 . 1 1131 0 -chrXV 855078 856753 HC_gene_8663_tx_2 4 - 855078 856753 . 1 1676 0 -chrXV 861003 863281 HC_gene_8219_tx_1 1 + 861003 863281 . 1 2279 0 -chrXV 861003 865672 HC_gene_8219_tx_2 3 + 861003 865672 . 1 4670 0 -chrXV 865574 866547 HC_gene_8664_tx_1 39 - 865574 866547 . 1 974 0 -chrXV 865574 866547 HC_gene_8664_tx_2 1 - 865574 866547 . 2 365,119 0,855 -chrXV 866417 866674 MC_gene_8220_tx_1 1 + 866417 866674 . 1 258 0 -chrXV 867070 868015 HC_gene_8221_tx_1 2709 + 867070 868015 . 2 80,429 0,517 -chrXV 867070 868015 HC_gene_8221_tx_2 7 + 867070 868015 . 2 65,429 0,517 -chrXV 867070 868015 HC_gene_8221_tx_3 269 + 867070 868015 . 2 80,426 0,520 -chrXV 867070 868015 HC_gene_8221_tx_4 62 + 867070 868015 . 1 946 0 -chrXV 867070 868015 HC_gene_8221_tx_5 47 + 867070 868015 . 2 69,431 0,515 -chrXV 867070 868015 HC_gene_8221_tx_6 3 + 867070 868015 . 2 62,431 0,515 -chrXV 867070 868015 HC_gene_8221_tx_7 4 + 867070 868015 . 2 80,476 0,470 -chrXV 867070 868015 HC_gene_8221_tx_8 10 + 867070 868015 . 2 63,431 0,515 -chrXV 867070 868015 HC_gene_8221_tx_9 4 + 867070 868015 . 2 80,409 0,537 -chrXV 867070 868119 HC_gene_8221_tx_10 11 + 867070 868119 . 2 80,533 0,517 -chrXV 867347 868015 HC_gene_8221_tx_11 8 + 867347 868015 . 1 669 0 -chrXV 867590 868015 HC_gene_8221_tx_12 771 + 867590 868015 . 1 426 0 -chrXV 867590 868119 HC_gene_8221_tx_13 3 + 867590 868119 . 1 530 0 -chrXV 867922 868340 LC_gene_8665_tx_1 1 - 867922 868340 . 1 419 0 -chrXV 868294 869101 HC_gene_8222_tx_1 140 + 868294 869101 . 1 808 0 -chrXV 868476 869101 HC_gene_8222_tx_2 13 + 868476 869101 . 1 626 0 -chrXV 868574 869101 HC_gene_8222_tx_3 17 + 868574 869101 . 1 528 0 -chrXV 868682 869101 HC_gene_8222_tx_4 54 + 868682 869101 . 1 420 0 -chrXV 868990 869597 HC_gene_8666_tx_1 8 - 868990 869597 . 1 608 0 -chrXV 869141 870127 HC_gene_8223_tx_1 14 + 869141 870127 . 1 987 0 -chrXV 869145 870127 HC_gene_8223_tx_2 1 + 869145 870127 . 1 983 0 -chrXV 869147 870127 HC_gene_8223_tx_3 1 + 869147 870127 . 1 981 0 -chrXV 869152 870127 HC_gene_8223_tx_4 1 + 869152 870127 . 1 976 0 -chrXV 869165 870127 HC_gene_8223_tx_5 1 + 869165 870127 . 1 963 0 -chrXV 869754 870127 HC_gene_8223_tx_6 1 + 869754 870127 . 1 374 0 -chrXV 869785 870127 HC_gene_8223_tx_7 14 + 869785 870127 . 1 343 0 -chrXV 869789 870127 HC_gene_8223_tx_8 1 + 869789 870127 . 1 339 0 -chrXV 869805 870127 HC_gene_8223_tx_9 1 + 869805 870127 . 1 323 0 -chrXV 869822 870127 HC_gene_8223_tx_10 1 + 869822 870127 . 1 306 0 -chrXV 869851 870127 HC_gene_8223_tx_11 1 + 869851 870127 . 1 277 0 -chrXV 870104 870821 HC_gene_8224_tx_1 5 + 870104 870821 . 1 718 0 -chrXV 870104 870821 HC_gene_8224_tx_2 1 + 870104 870821 . 2 442,201 0,517 -chrXV 870104 874255 HC_gene_8224_tx_3 1 + 870104 874255 . 2 240,3630 0,522 -chrXV 870104 874255 HC_gene_8224_tx_4 1 + 870104 874255 . 2 3066,980 0,3172 -chrXV 870104 874255 HC_gene_8224_tx_5 1 + 870104 874255 . 2 1431,2660 0,1492 -chrXV 870104 874255 HC_gene_8224_tx_6 1 + 870104 874255 . 1 4152 0 -chrXV 870126 870687 LC_gene_8667_tx_1 1 - 870126 870687 . 1 562 0 -chrXV 873977 875348 HC_gene_8668_tx_1 1 - 873977 875348 . 1 1372 0 -chrXV 874386 875348 HC_gene_8668_tx_2 19 - 874386 875348 . 1 963 0 -chrXV 874425 874998 HC_gene_8225_tx_1 3 + 874425 874998 . 1 574 0 -chrXV 874461 875348 HC_gene_8668_tx_3 14 - 874461 875348 . 1 888 0 -chrXV 875042 877118 LC_gene_8226_tx_1 1 + 875042 877118 . 1 2077 0 -chrXV 876391 877340 HC_gene_8669_tx_1 2 - 876391 877340 . 1 950 0 -chrXV 876391 877730 HC_gene_8669_tx_2 3 - 876391 877730 . 1 1340 0 -chrXV 876524 877730 HC_gene_8669_tx_3 2 - 876524 877730 . 1 1207 0 -chrXV 876994 877340 HC_gene_8669_tx_4 58 - 876994 877340 . 1 347 0 -chrXV 876994 877571 HC_gene_8669_tx_5 111 - 876994 877571 . 1 578 0 -chrXV 876994 877730 HC_gene_8669_tx_6 671 - 876994 877730 . 1 737 0 -chrXV 878070 880736 HC_gene_8227_tx_1 4 + 878070 880736 . 1 2667 0 -chrXV 878390 880736 HC_gene_8227_tx_2 13 + 878390 880736 . 1 2347 0 -chrXV 878390 880736 HC_gene_8227_tx_3 1 + 878390 880736 . 2 1211,1064 0,1283 -chrXV 878390 880736 HC_gene_8227_tx_4 1 + 878390 880736 . 2 1104,1163 0,1184 -chrXV 878390 880810 HC_gene_8227_tx_5 1 + 878390 880810 . 1 2421 0 -chrXV 878835 880736 HC_gene_8227_tx_6 1 + 878835 880736 . 1 1902 0 -chrXV 879098 880736 HC_gene_8227_tx_7 4 + 879098 880736 . 1 1639 0 -chrXV 880140 880489 LC_gene_8670_tx_1 1 - 880140 880489 . 1 350 0 -chrXV 880987 882582 HC_gene_8228_tx_1 6 + 880987 882582 . 1 1596 0 -chrXV 880987 882582 HC_gene_8228_tx_2 1 + 880987 882582 . 2 734,769 0,827 -chrXV 880987 882725 HC_gene_8228_tx_3 6 + 880987 882725 . 1 1739 0 -chrXV 881074 881950 MC_gene_8671_tx_1 1 - 881074 881950 . 1 877 0 -chrXV 882666 884112 MC_gene_8672_tx_1 1 - 882666 884112 . 1 1447 0 -chrXV 882778 884210 HC_gene_8229_tx_1 280 + 882778 884210 . 1 1433 0 -chrXV 882778 884210 HC_gene_8229_tx_2 1 + 882778 884210 . 2 160,809 0,624 -chrXV 882778 884210 HC_gene_8229_tx_3 1 + 882778 884210 . 2 700,667 0,766 -chrXV 882778 884210 HC_gene_8229_tx_4 1 + 882778 884210 . 2 802,572 0,861 -chrXV 882778 884210 HC_gene_8229_tx_5 1 + 882778 884210 . 2 288,665 0,768 -chrXV 882778 884210 HC_gene_8229_tx_6 1 + 882778 884210 . 2 201,1047 0,386 -chrXV 882778 884210 HC_gene_8229_tx_7 1 + 882778 884210 . 2 260,1114 0,319 -chrXV 882778 884364 HC_gene_8229_tx_8 6 + 882778 884364 . 1 1587 0 -chrXV 883254 884210 HC_gene_8229_tx_9 63 + 883254 884210 . 1 957 0 -chrXV 884411 885580 HC_gene_8230_tx_1 1 + 884411 885580 . 1 1170 0 -chrXV 886222 887966 HC_gene_8231_tx_1 1 + 886222 887966 . 1 1745 0 -chrXV 887289 887966 HC_gene_8231_tx_2 2 + 887289 887966 . 1 678 0 -chrXV 887343 887966 HC_gene_8231_tx_3 1 + 887343 887966 . 1 624 0 -chrXV 887892 888752 HC_gene_8673_tx_1 14 - 887892 888752 . 1 861 0 -chrXV 888171 888752 HC_gene_8673_tx_2 69 - 888171 888752 . 1 582 0 -chrXV 888171 888752 HC_gene_8673_tx_3 1 - 888171 888752 . 2 79,239 0,343 -chrXV 888348 888752 HC_gene_8673_tx_4 1 - 888348 888752 . 1 405 0 -chrXV 888354 888752 HC_gene_8673_tx_5 1 - 888354 888752 . 1 399 0 -chrXV 888360 888752 HC_gene_8673_tx_6 1 - 888360 888752 . 1 393 0 -chrXV 888361 888752 HC_gene_8673_tx_7 2 - 888361 888752 . 1 392 0 -chrXV 888362 888752 HC_gene_8673_tx_8 1 - 888362 888752 . 1 391 0 -chrXV 888364 888752 HC_gene_8673_tx_9 3 - 888364 888752 . 1 389 0 -chrXV 888956 889699 HC_gene_8232_tx_1 5 + 888956 889699 . 1 744 0 -chrXV 888956 889839 HC_gene_8232_tx_2 40 + 888956 889839 . 1 884 0 -chrXV 888956 889972 HC_gene_8232_tx_3 2 + 888956 889972 . 1 1017 0 -chrXV 888956 890426 HC_gene_8232_tx_4 1 + 888956 890426 . 1 1471 0 -chrXV 888956 891493 HC_gene_8232_tx_5 1 + 888956 891493 . 1 2538 0 -chrXV 888956 891661 HC_gene_8232_tx_6 1 + 888956 891661 . 1 2706 0 -chrXV 889151 889839 HC_gene_8232_tx_8 10 + 889151 889839 . 1 689 0 -chrXV 889151 891493 HC_gene_8232_tx_7 1 + 889151 891493 . 1 2343 0 -chrXV 889762 891544 HC_gene_8674_tx_1 55 - 889762 891544 . 1 1783 0 -chrXV 889762 891544 HC_gene_8674_tx_2 1 - 889762 891544 . 2 1492,134 0,1649 -chrXV 889762 891544 HC_gene_8674_tx_3 1 - 889762 891544 . 2 265,1066 0,717 -chrXV 889762 891544 HC_gene_8674_tx_4 1 - 889762 891544 . 2 904,809 0,974 -chrXV 891550 892259 HC_gene_8675_tx_1 1 - 891550 892259 . 1 710 0 -chrXV 891938 892698 MC_gene_8233_tx_1 1 + 891938 892698 . 1 761 0 -chrXV 892625 893993 HC_gene_8676_tx_1 6 - 892625 893993 . 1 1369 0 -chrXV 892625 894265 HC_gene_8676_tx_2 20 - 892625 894265 . 1 1641 0 -chrXV 892625 894265 HC_gene_8676_tx_3 1 - 892625 894265 . 2 852,729 0,912 -chrXV 892625 896416 HC_gene_8676_tx_4 2 - 892625 896416 . 1 3792 0 -chrXV 892625 896489 HC_gene_8676_tx_5 1 - 892625 896489 . 1 3865 0 -chrXV 892788 894229 LC_gene_8234_tx_1 1 + 892788 894229 . 1 1442 0 -chrXV 894083 896246 HC_gene_8676_tx_6 1 - 894083 896246 . 1 2164 0 -chrXV 894484 896489 HC_gene_8676_tx_7 4 - 894484 896489 . 1 2006 0 -chrXV 894742 895608 LC_gene_8235_tx_1 1 + 894742 895608 . 1 867 0 -chrXV 896562 897085 HC_gene_8677_tx_1 262 - 896562 897085 . 1 524 0 -chrXV 896562 897085 HC_gene_8677_tx_2 1 - 896562 897085 . 2 41,452 0,72 -chrXV 896562 897085 HC_gene_8677_tx_3 1 - 896562 897085 . 2 310,108 0,416 -chrXV 896562 897394 HC_gene_8677_tx_32 6 - 896562 897394 . 1 833 0 -chrXV 896562 897394 HC_gene_8677_tx_33 1 - 896562 897394 . 2 660,110 0,723 -chrXV 896562 897472 HC_gene_8677_tx_34 35 - 896562 897472 . 1 911 0 -chrXV 896562 897472 HC_gene_8677_tx_35 1 - 896562 897472 . 2 41,822 0,89 -chrXV 896562 897472 HC_gene_8677_tx_36 1 - 896562 897472 . 2 280,595 0,316 -chrXV 896562 897472 HC_gene_8677_tx_37 1 - 896562 897472 . 2 838,22 0,889 -chrXV 896562 898388 HC_gene_8677_tx_58 155 - 896562 898388 . 1 1827 0 -chrXV 896562 898388 HC_gene_8677_tx_59 1 - 896562 898388 . 2 595,989 0,838 -chrXV 896562 898388 HC_gene_8677_tx_60 1 - 896562 898388 . 2 720,296 0,1531 -chrXV 896562 898388 HC_gene_8677_tx_61 1 - 896562 898388 . 2 690,1085 0,742 -chrXV 896562 898388 HC_gene_8677_tx_62 1 - 896562 898388 . 2 889,728 0,1099 -chrXV 896647 897085 HC_gene_8677_tx_4 1 - 896647 897085 . 1 439 0 -chrXV 896653 898388 HC_gene_8677_tx_63 1 - 896653 898388 . 1 1736 0 -chrXV 896654 897085 HC_gene_8677_tx_5 2 - 896654 897085 . 1 432 0 -chrXV 896654 897472 HC_gene_8677_tx_38 1 - 896654 897472 . 1 819 0 -chrXV 896654 898388 HC_gene_8677_tx_64 2 - 896654 898388 . 1 1735 0 -chrXV 896655 897085 HC_gene_8677_tx_6 3 - 896655 897085 . 1 431 0 -chrXV 896656 897085 HC_gene_8677_tx_7 4 - 896656 897085 . 1 430 0 -chrXV 896656 898388 HC_gene_8677_tx_65 3 - 896656 898388 . 1 1733 0 -chrXV 896657 897085 HC_gene_8677_tx_8 8 - 896657 897085 . 1 429 0 -chrXV 896657 897472 HC_gene_8677_tx_39 2 - 896657 897472 . 1 816 0 -chrXV 896657 898388 HC_gene_8677_tx_66 6 - 896657 898388 . 1 1732 0 -chrXV 896658 897085 HC_gene_8677_tx_9 2 - 896658 897085 . 1 428 0 -chrXV 896658 897472 HC_gene_8677_tx_40 2 - 896658 897472 . 1 815 0 -chrXV 896658 898388 HC_gene_8677_tx_67 1 - 896658 898388 . 1 1731 0 -chrXV 896659 897085 HC_gene_8677_tx_10 7 - 896659 897085 . 1 427 0 -chrXV 896659 897472 HC_gene_8677_tx_41 2 - 896659 897472 . 1 814 0 -chrXV 896659 898388 HC_gene_8677_tx_68 1 - 896659 898388 . 1 1730 0 -chrXV 896660 897085 HC_gene_8677_tx_11 1 - 896660 897085 . 1 426 0 -chrXV 896660 898388 HC_gene_8677_tx_69 3 - 896660 898388 . 1 1729 0 -chrXV 896661 897085 HC_gene_8677_tx_12 3 - 896661 897085 . 1 425 0 -chrXV 896661 897472 HC_gene_8677_tx_42 1 - 896661 897472 . 1 812 0 -chrXV 896661 898388 HC_gene_8677_tx_70 2 - 896661 898388 . 1 1728 0 -chrXV 896662 897085 HC_gene_8677_tx_13 7 - 896662 897085 . 1 424 0 -chrXV 896662 897472 HC_gene_8677_tx_43 2 - 896662 897472 . 1 811 0 -chrXV 896662 898388 HC_gene_8677_tx_71 9 - 896662 898388 . 1 1727 0 -chrXV 896663 897085 HC_gene_8677_tx_14 3 - 896663 897085 . 1 423 0 -chrXV 896663 897472 HC_gene_8677_tx_44 1 - 896663 897472 . 1 810 0 -chrXV 896663 898388 HC_gene_8677_tx_72 1 - 896663 898388 . 1 1726 0 -chrXV 896664 897085 HC_gene_8677_tx_15 1 - 896664 897085 . 1 422 0 -chrXV 896664 898388 HC_gene_8677_tx_73 3 - 896664 898388 . 1 1725 0 -chrXV 896665 897085 HC_gene_8677_tx_16 1 - 896665 897085 . 1 421 0 -chrXV 896665 898388 HC_gene_8677_tx_74 3 - 896665 898388 . 1 1724 0 -chrXV 896666 897085 HC_gene_8677_tx_17 3 - 896666 897085 . 1 420 0 -chrXV 896666 898388 HC_gene_8677_tx_75 3 - 896666 898388 . 1 1723 0 -chrXV 896667 897085 HC_gene_8677_tx_18 1 - 896667 897085 . 1 419 0 -chrXV 896667 898388 HC_gene_8677_tx_76 6 - 896667 898388 . 1 1722 0 -chrXV 896668 897085 HC_gene_8677_tx_19 2 - 896668 897085 . 1 418 0 -chrXV 896668 897472 HC_gene_8677_tx_45 2 - 896668 897472 . 1 805 0 -chrXV 896668 898388 HC_gene_8677_tx_77 3 - 896668 898388 . 1 1721 0 -chrXV 896669 897085 HC_gene_8677_tx_20 3 - 896669 897085 . 1 417 0 -chrXV 896669 898388 HC_gene_8677_tx_78 5 - 896669 898388 . 1 1720 0 -chrXV 896670 897394 HC_gene_8677_tx_46 1 - 896670 897394 . 1 725 0 -chrXV 896671 898388 HC_gene_8677_tx_79 3 - 896671 898388 . 1 1718 0 -chrXV 896672 897085 HC_gene_8677_tx_21 3 - 896672 897085 . 1 414 0 -chrXV 896672 897394 HC_gene_8677_tx_47 1 - 896672 897394 . 1 723 0 -chrXV 896672 897472 HC_gene_8677_tx_48 2 - 896672 897472 . 1 801 0 -chrXV 896672 898388 HC_gene_8677_tx_80 7 - 896672 898388 . 1 1717 0 -chrXV 896673 897085 HC_gene_8677_tx_22 1 - 896673 897085 . 1 413 0 -chrXV 896673 897472 HC_gene_8677_tx_49 1 - 896673 897472 . 1 800 0 -chrXV 896673 898388 HC_gene_8677_tx_81 3 - 896673 898388 . 1 1716 0 -chrXV 896674 897085 HC_gene_8677_tx_23 1 - 896674 897085 . 1 412 0 -chrXV 896676 898388 HC_gene_8677_tx_82 1 - 896676 898388 . 1 1713 0 -chrXV 896677 898388 HC_gene_8677_tx_83 1 - 896677 898388 . 1 1712 0 -chrXV 896678 898388 HC_gene_8677_tx_84 1 - 896678 898388 . 1 1711 0 -chrXV 896679 897085 HC_gene_8677_tx_24 1 - 896679 897085 . 2 158,213 0,194 -chrXV 896679 897085 HC_gene_8677_tx_25 3 - 896679 897085 . 1 407 0 -chrXV 896679 897394 HC_gene_8677_tx_50 1 - 896679 897394 . 1 716 0 -chrXV 896679 897472 HC_gene_8677_tx_51 4 - 896679 897472 . 1 794 0 -chrXV 896679 898388 HC_gene_8677_tx_85 5 - 896679 898388 . 1 1710 0 -chrXV 896680 897085 HC_gene_8677_tx_26 3 - 896680 897085 . 1 406 0 -chrXV 896680 897394 HC_gene_8677_tx_52 1 - 896680 897394 . 1 715 0 -chrXV 896680 897472 HC_gene_8677_tx_53 1 - 896680 897472 . 1 793 0 -chrXV 896680 898388 HC_gene_8677_tx_86 4 - 896680 898388 . 1 1709 0 -chrXV 896681 897394 HC_gene_8677_tx_54 1 - 896681 897394 . 1 714 0 -chrXV 896681 897472 HC_gene_8677_tx_55 2 - 896681 897472 . 1 792 0 -chrXV 896681 898388 HC_gene_8677_tx_87 6 - 896681 898388 . 1 1708 0 -chrXV 896682 898388 HC_gene_8677_tx_88 1 - 896682 898388 . 1 1707 0 -chrXV 896688 897085 HC_gene_8677_tx_27 1 - 896688 897085 . 1 398 0 -chrXV 896690 897085 HC_gene_8677_tx_28 1 - 896690 897085 . 1 396 0 -chrXV 896690 898388 HC_gene_8677_tx_89 1 - 896690 898388 . 1 1699 0 -chrXV 896691 898388 HC_gene_8677_tx_90 1 - 896691 898388 . 1 1698 0 -chrXV 896692 898388 HC_gene_8677_tx_91 1 - 896692 898388 . 1 1697 0 -chrXV 896694 897085 HC_gene_8677_tx_29 1 - 896694 897085 . 1 392 0 -chrXV 896696 898388 HC_gene_8677_tx_92 2 - 896696 898388 . 1 1693 0 -chrXV 896699 897085 HC_gene_8677_tx_30 1 - 896699 897085 . 1 387 0 -chrXV 896708 897085 HC_gene_8677_tx_31 1 - 896708 897085 . 1 378 0 -chrXV 896708 897472 HC_gene_8677_tx_56 1 - 896708 897472 . 1 765 0 -chrXV 896708 898388 HC_gene_8677_tx_93 1 - 896708 898388 . 1 1681 0 -chrXV 896709 898388 HC_gene_8677_tx_94 1 - 896709 898388 . 1 1680 0 -chrXV 896711 898388 HC_gene_8677_tx_95 1 - 896711 898388 . 1 1678 0 -chrXV 896713 897472 HC_gene_8677_tx_57 1 - 896713 897472 . 1 760 0 -chrXV 896716 898388 HC_gene_8677_tx_96 1 - 896716 898388 . 1 1673 0 -chrXV 898645 898941 HC_gene_8236_tx_1 8 + 898645 898941 . 1 297 0 -chrXV 898846 899986 HC_gene_8678_tx_1 73 - 898846 899986 . 1 1141 0 -chrXV 898979 899986 HC_gene_8678_tx_2 8 - 898979 899986 . 1 1008 0 -chrXV 900150 900618 HC_gene_8679_tx_1 3261 - 900150 900618 . 1 469 0 -chrXV 900150 901221 HC_gene_8679_tx_2 47 - 900150 901221 . 1 1072 0 -chrXV 900150 901221 HC_gene_8679_tx_3 72 - 900150 901221 . 2 618,28 0,1044 -chrXV 901641 903277 HC_gene_8680_tx_1 1 - 901641 903277 . 1 1637 0 -chrXV 901693 902386 HC_gene_8680_tx_2 1 - 901693 902386 . 1 694 0 -chrXV 901811 902386 HC_gene_8680_tx_3 1 - 901811 902386 . 1 576 0 -chrXV 903982 904468 MC_gene_8237_tx_1 1 + 903982 904468 . 1 487 0 -chrXV 904497 905543 LC_gene_8681_tx_1 1 - 904497 905543 . 1 1047 0 -chrXV 904673 906065 HC_gene_8238_tx_1 5 + 904673 906065 . 1 1393 0 -chrXV 904673 906212 HC_gene_8238_tx_2 88 + 904673 906212 . 1 1540 0 -chrXV 904673 906212 HC_gene_8238_tx_3 1 + 904673 906212 . 2 596,590 0,950 -chrXV 906092 907389 HC_gene_8682_tx_1 2 - 906092 907389 . 1 1298 0 -chrXV 906092 907605 HC_gene_8682_tx_2 2 - 906092 907605 . 1 1514 0 -chrXV 906092 907675 HC_gene_8682_tx_3 23 - 906092 907675 . 1 1584 0 -chrXV 906092 908204 HC_gene_8682_tx_5 2 - 906092 908204 . 1 2113 0 -chrXV 906176 907675 HC_gene_8682_tx_4 1 - 906176 907675 . 1 1500 0 -chrXV 906526 907389 HC_gene_8682_tx_6 1 - 906526 907389 . 1 864 0 -chrXV 906526 907675 HC_gene_8682_tx_7 1 - 906526 907675 . 1 1150 0 -chrXV 907960 908347 MC_gene_8239_tx_1 1 + 907960 908347 . 1 388 0 -chrXV 908799 911662 HC_gene_8683_tx_1 1 - 908799 911662 . 1 2864 0 -chrXV 909313 911690 HC_gene_8240_tx_1 18 + 909313 911690 . 1 2378 0 -chrXV 909313 911690 HC_gene_8240_tx_2 1 + 909313 911690 . 2 2170,83 0,2295 -chrXV 909424 911690 HC_gene_8240_tx_3 1 + 909424 911690 . 1 2267 0 -chrXV 909527 911690 HC_gene_8240_tx_4 3 + 909527 911690 . 1 2164 0 -chrXV 909833 911690 HC_gene_8240_tx_5 5 + 909833 911690 . 1 1858 0 -chrXV 910211 911690 HC_gene_8240_tx_6 6 + 910211 911690 . 1 1480 0 -chrXV 910570 911690 HC_gene_8240_tx_7 4 + 910570 911690 . 1 1121 0 -chrXV 910642 911690 HC_gene_8240_tx_8 1 + 910642 911690 . 2 876,92 0,957 -chrXV 910642 911690 HC_gene_8240_tx_9 4 + 910642 911690 . 1 1049 0 -chrXV 910853 911690 HC_gene_8240_tx_10 14 + 910853 911690 . 1 838 0 -chrXV 910853 911690 HC_gene_8240_tx_11 1 + 910853 911690 . 2 399,324 0,514 -chrXV 910936 911690 HC_gene_8240_tx_12 13 + 910936 911690 . 1 755 0 -chrXV 911029 911690 HC_gene_8240_tx_13 5 + 911029 911690 . 1 662 0 -chrXV 911029 911786 HC_gene_8240_tx_14 1 + 911029 911786 . 1 758 0 -chrXV 911356 911690 HC_gene_8240_tx_15 11 + 911356 911690 . 1 335 0 -chrXV 911356 911786 HC_gene_8240_tx_16 1 + 911356 911786 . 1 431 0 -chrXV 911629 911916 HC_gene_8684_tx_1 1 - 911629 911916 . 1 288 0 -chrXV 911629 912515 HC_gene_8684_tx_2 9 - 911629 912515 . 1 887 0 -chrXV 912347 913599 HC_gene_8241_tx_1 2 + 912347 913599 . 1 1253 0 -chrXV 912601 913599 HC_gene_8241_tx_2 1 + 912601 913599 . 1 999 0 -chrXV 912784 913599 HC_gene_8241_tx_3 25 + 912784 913599 . 1 816 0 -chrXV 912784 913853 HC_gene_8242_tx_1 1 + 912784 913853 . 1 1070 0 -chrXV 912784 914068 HC_gene_8242_tx_2 6 + 912784 914068 . 1 1285 0 -chrXV 913524 915202 HC_gene_8685_tx_1 40 - 913524 915202 . 1 1679 0 -chrXV 913524 915202 HC_gene_8685_tx_2 1 - 913524 915202 . 2 860,769 0,910 -chrXV 913524 915202 HC_gene_8685_tx_3 1 - 913524 915202 . 2 48,1572 0,107 -chrXV 913524 915202 HC_gene_8685_tx_4 1 - 913524 915202 . 2 693,880 0,799 -chrXV 915951 918324 HC_gene_8243_tx_1 18 + 915951 918324 . 1 2374 0 -chrXV 915951 918324 HC_gene_8243_tx_2 1 + 915951 918324 . 2 1351,728 0,1646 -chrXV 918446 919329 HC_gene_8686_tx_1 12 - 918446 919329 . 1 884 0 -chrXV 918446 920118 HC_gene_8686_tx_2 4 - 918446 920118 . 1 1673 0 -chrXV 918446 921315 HC_gene_8686_tx_3 10 - 918446 921315 . 1 2870 0 -chrXV 921057 922686 HC_gene_8687_tx_1 1 - 921057 922686 . 1 1630 0 -chrXV 921057 922925 HC_gene_8687_tx_2 1 - 921057 922925 . 1 1869 0 -chrXV 921319 922085 HC_gene_8687_tx_111 1 - 921319 922085 . 1 767 0 -chrXV 921319 922925 HC_gene_8687_tx_3 6 - 921319 922925 . 1 1607 0 -chrXV 921319 922925 HC_gene_8687_tx_4 1 - 921319 922925 . 2 1346,177 0,1430 -chrXV 921393 922085 HC_gene_8687_tx_112 1 - 921393 922085 . 1 693 0 -chrXV 921393 922925 HC_gene_8687_tx_5 1 - 921393 922925 . 1 1533 0 -chrXV 921394 922925 HC_gene_8687_tx_6 1 - 921394 922925 . 1 1532 0 -chrXV 921395 922925 HC_gene_8687_tx_7 1 - 921395 922925 . 1 1531 0 -chrXV 921396 922085 HC_gene_8687_tx_113 1 - 921396 922085 . 1 690 0 -chrXV 921400 922925 HC_gene_8687_tx_8 1 - 921400 922925 . 1 1526 0 -chrXV 921403 921785 HC_gene_8687_tx_141 2 - 921403 921785 . 1 383 0 -chrXV 921403 922085 HC_gene_8687_tx_114 2 - 921403 922085 . 1 683 0 -chrXV 921403 922374 HC_gene_8687_tx_9 1 - 921403 922374 . 1 972 0 -chrXV 921403 922686 HC_gene_8687_tx_10 1 - 921403 922686 . 1 1284 0 -chrXV 921403 922925 HC_gene_8687_tx_11 5 - 921403 922925 . 1 1523 0 -chrXV 921406 921785 HC_gene_8687_tx_142 1 - 921406 921785 . 1 380 0 -chrXV 921407 921785 HC_gene_8687_tx_143 1 - 921407 921785 . 1 379 0 -chrXV 921407 922374 HC_gene_8687_tx_12 1 - 921407 922374 . 1 968 0 -chrXV 921407 922464 HC_gene_8687_tx_13 1 - 921407 922464 . 1 1058 0 -chrXV 921407 922686 HC_gene_8687_tx_14 3 - 921407 922686 . 1 1280 0 -chrXV 921407 922925 HC_gene_8687_tx_15 1 - 921407 922925 . 1 1519 0 -chrXV 921409 922557 HC_gene_8687_tx_16 1 - 921409 922557 . 1 1149 0 -chrXV 921412 922557 HC_gene_8687_tx_17 1 - 921412 922557 . 1 1146 0 -chrXV 921413 921785 HC_gene_8687_tx_144 1 - 921413 921785 . 1 373 0 -chrXV 921413 922158 HC_gene_8687_tx_115 1 - 921413 922158 . 1 746 0 -chrXV 921415 922925 HC_gene_8687_tx_18 1 - 921415 922925 . 1 1511 0 -chrXV 921416 922374 HC_gene_8687_tx_19 1 - 921416 922374 . 1 959 0 -chrXV 921421 922925 HC_gene_8687_tx_20 1 - 921421 922925 . 1 1505 0 -chrXV 921423 922925 HC_gene_8687_tx_21 1 - 921423 922925 . 1 1503 0 -chrXV 921424 921785 HC_gene_8687_tx_145 1 - 921424 921785 . 1 362 0 -chrXV 921424 922158 HC_gene_8687_tx_116 1 - 921424 922158 . 1 735 0 -chrXV 921424 922686 HC_gene_8687_tx_22 1 - 921424 922686 . 1 1263 0 -chrXV 921424 922925 HC_gene_8687_tx_23 1 - 921424 922925 . 1 1502 0 -chrXV 921424 922925 HC_gene_8687_tx_24 1 - 921424 922925 . 2 610,831 0,671 -chrXV 921425 921785 HC_gene_8687_tx_146 1 - 921425 921785 . 1 361 0 -chrXV 921425 922085 HC_gene_8687_tx_117 1 - 921425 922085 . 1 661 0 -chrXV 921425 922158 HC_gene_8687_tx_118 1 - 921425 922158 . 1 734 0 -chrXV 921425 922925 HC_gene_8687_tx_25 1 - 921425 922925 . 1 1501 0 -chrXV 921426 922085 HC_gene_8687_tx_119 2 - 921426 922085 . 1 660 0 -chrXV 921426 922557 HC_gene_8687_tx_26 1 - 921426 922557 . 1 1132 0 -chrXV 921426 922925 HC_gene_8687_tx_27 7 - 921426 922925 . 1 1500 0 -chrXV 921431 922158 HC_gene_8687_tx_120 1 - 921431 922158 . 1 728 0 -chrXV 921431 922374 HC_gene_8687_tx_28 1 - 921431 922374 . 1 944 0 -chrXV 921431 922925 HC_gene_8687_tx_29 3 - 921431 922925 . 1 1495 0 -chrXV 921433 922925 HC_gene_8687_tx_30 3 - 921433 922925 . 1 1493 0 -chrXV 921434 922085 HC_gene_8687_tx_121 1 - 921434 922085 . 1 652 0 -chrXV 921434 922925 HC_gene_8687_tx_31 1 - 921434 922925 . 1 1492 0 -chrXV 921435 922158 HC_gene_8687_tx_122 1 - 921435 922158 . 1 724 0 -chrXV 921435 922925 HC_gene_8687_tx_32 1 - 921435 922925 . 1 1491 0 -chrXV 921436 922085 HC_gene_8687_tx_123 2 - 921436 922085 . 1 650 0 -chrXV 921436 922158 HC_gene_8687_tx_124 1 - 921436 922158 . 1 723 0 -chrXV 921436 922464 HC_gene_8687_tx_33 1 - 921436 922464 . 1 1029 0 -chrXV 921436 922686 HC_gene_8687_tx_34 2 - 921436 922686 . 1 1251 0 -chrXV 921436 922925 HC_gene_8687_tx_35 5 - 921436 922925 . 1 1490 0 -chrXV 921437 921785 HC_gene_8687_tx_147 1 - 921437 921785 . 1 349 0 -chrXV 921437 922925 HC_gene_8687_tx_36 1 - 921437 922925 . 1 1489 0 -chrXV 921438 922925 HC_gene_8687_tx_37 1 - 921438 922925 . 1 1488 0 -chrXV 921440 922925 HC_gene_8687_tx_38 1 - 921440 922925 . 1 1486 0 -chrXV 921443 922085 HC_gene_8687_tx_125 1 - 921443 922085 . 1 643 0 -chrXV 921443 922158 HC_gene_8687_tx_126 1 - 921443 922158 . 1 716 0 -chrXV 921444 922686 HC_gene_8687_tx_39 1 - 921444 922686 . 1 1243 0 -chrXV 921444 922925 HC_gene_8687_tx_40 2 - 921444 922925 . 1 1482 0 -chrXV 921445 922085 HC_gene_8687_tx_127 1 - 921445 922085 . 1 641 0 -chrXV 921445 922925 HC_gene_8687_tx_41 2 - 921445 922925 . 1 1481 0 -chrXV 921446 921785 HC_gene_8687_tx_148 1 - 921446 921785 . 1 340 0 -chrXV 921446 922925 HC_gene_8687_tx_42 1 - 921446 922925 . 1 1480 0 -chrXV 921448 922925 HC_gene_8687_tx_43 1 - 921448 922925 . 1 1478 0 -chrXV 921449 921785 HC_gene_8687_tx_149 1 - 921449 921785 . 1 337 0 -chrXV 921449 922374 HC_gene_8687_tx_44 1 - 921449 922374 . 1 926 0 -chrXV 921449 922557 HC_gene_8687_tx_45 2 - 921449 922557 . 1 1109 0 -chrXV 921449 922925 HC_gene_8687_tx_46 6 - 921449 922925 . 1 1477 0 -chrXV 921450 921785 HC_gene_8687_tx_150 3 - 921450 921785 . 1 336 0 -chrXV 921450 922085 HC_gene_8687_tx_128 1 - 921450 922085 . 1 636 0 -chrXV 921450 922158 HC_gene_8687_tx_129 1 - 921450 922158 . 1 709 0 -chrXV 921450 922557 HC_gene_8687_tx_47 1 - 921450 922557 . 1 1108 0 -chrXV 921450 922925 HC_gene_8687_tx_48 3 - 921450 922925 . 1 1476 0 -chrXV 921451 921785 HC_gene_8687_tx_151 1 - 921451 921785 . 1 335 0 -chrXV 921451 922158 HC_gene_8687_tx_130 1 - 921451 922158 . 1 708 0 -chrXV 921451 922557 HC_gene_8687_tx_49 1 - 921451 922557 . 1 1107 0 -chrXV 921451 922686 HC_gene_8687_tx_50 1 - 921451 922686 . 1 1236 0 -chrXV 921451 922925 HC_gene_8687_tx_51 3 - 921451 922925 . 1 1475 0 -chrXV 921453 921785 HC_gene_8687_tx_152 2 - 921453 921785 . 1 333 0 -chrXV 921453 922925 HC_gene_8687_tx_52 2 - 921453 922925 . 1 1473 0 -chrXV 921455 922464 HC_gene_8687_tx_53 1 - 921455 922464 . 1 1010 0 -chrXV 921457 922085 HC_gene_8687_tx_131 1 - 921457 922085 . 1 629 0 -chrXV 921457 922686 HC_gene_8687_tx_54 1 - 921457 922686 . 1 1230 0 -chrXV 921457 922925 HC_gene_8687_tx_55 4 - 921457 922925 . 1 1469 0 -chrXV 921458 922686 HC_gene_8687_tx_56 1 - 921458 922686 . 1 1229 0 -chrXV 921458 922925 HC_gene_8687_tx_57 9 - 921458 922925 . 1 1468 0 -chrXV 921459 921785 HC_gene_8687_tx_153 1 - 921459 921785 . 1 327 0 -chrXV 921459 922464 HC_gene_8687_tx_58 1 - 921459 922464 . 1 1006 0 -chrXV 921459 922557 HC_gene_8687_tx_59 1 - 921459 922557 . 1 1099 0 -chrXV 921459 922925 HC_gene_8687_tx_60 2 - 921459 922925 . 1 1467 0 -chrXV 921460 922464 HC_gene_8687_tx_61 2 - 921460 922464 . 1 1005 0 -chrXV 921460 922557 HC_gene_8687_tx_62 1 - 921460 922557 . 1 1098 0 -chrXV 921460 922686 HC_gene_8687_tx_63 1 - 921460 922686 . 1 1227 0 -chrXV 921460 922925 HC_gene_8687_tx_64 2 - 921460 922925 . 1 1466 0 -chrXV 921461 922925 HC_gene_8687_tx_65 1 - 921461 922925 . 1 1465 0 -chrXV 921462 922925 HC_gene_8687_tx_66 1 - 921462 922925 . 1 1464 0 -chrXV 921463 921785 HC_gene_8687_tx_154 1 - 921463 921785 . 1 323 0 -chrXV 921463 922085 HC_gene_8687_tx_132 1 - 921463 922085 . 1 623 0 -chrXV 921463 922158 HC_gene_8687_tx_133 2 - 921463 922158 . 1 696 0 -chrXV 921463 922374 HC_gene_8687_tx_67 1 - 921463 922374 . 1 912 0 -chrXV 921463 922686 HC_gene_8687_tx_68 2 - 921463 922686 . 1 1224 0 -chrXV 921463 922925 HC_gene_8687_tx_69 6 - 921463 922925 . 1 1463 0 -chrXV 921464 922374 HC_gene_8687_tx_70 1 - 921464 922374 . 1 911 0 -chrXV 921464 922925 HC_gene_8687_tx_71 1 - 921464 922925 . 1 1462 0 -chrXV 921465 921785 HC_gene_8687_tx_155 3 - 921465 921785 . 1 321 0 -chrXV 921465 922085 HC_gene_8687_tx_134 4 - 921465 922085 . 1 621 0 -chrXV 921465 922557 HC_gene_8687_tx_72 2 - 921465 922557 . 1 1093 0 -chrXV 921465 922925 HC_gene_8687_tx_73 5 - 921465 922925 . 1 1461 0 -chrXV 921466 921785 HC_gene_8687_tx_156 1 - 921466 921785 . 1 320 0 -chrXV 921466 922925 HC_gene_8687_tx_74 1 - 921466 922925 . 1 1460 0 -chrXV 921467 921785 HC_gene_8687_tx_157 4 - 921467 921785 . 1 319 0 -chrXV 921467 922085 HC_gene_8687_tx_135 4 - 921467 922085 . 1 619 0 -chrXV 921467 922158 HC_gene_8687_tx_136 2 - 921467 922158 . 1 692 0 -chrXV 921467 922374 HC_gene_8687_tx_75 1 - 921467 922374 . 1 908 0 -chrXV 921467 922464 HC_gene_8687_tx_76 3 - 921467 922464 . 1 998 0 -chrXV 921467 922557 HC_gene_8687_tx_77 3 - 921467 922557 . 1 1091 0 -chrXV 921467 922686 HC_gene_8687_tx_78 4 - 921467 922686 . 1 1220 0 -chrXV 921467 922925 HC_gene_8687_tx_79 12 - 921467 922925 . 1 1459 0 -chrXV 921468 922557 HC_gene_8687_tx_80 1 - 921468 922557 . 2 368,607 0,483 -chrXV 921470 921785 HC_gene_8687_tx_158 1 - 921470 921785 . 1 316 0 -chrXV 921470 922557 HC_gene_8687_tx_81 1 - 921470 922557 . 1 1088 0 -chrXV 921470 922925 HC_gene_8687_tx_82 5 - 921470 922925 . 1 1456 0 -chrXV 921471 921785 HC_gene_8687_tx_159 1 - 921471 921785 . 1 315 0 -chrXV 921471 922085 HC_gene_8687_tx_137 1 - 921471 922085 . 1 615 0 -chrXV 921471 922374 HC_gene_8687_tx_83 1 - 921471 922374 . 1 904 0 -chrXV 921471 922464 HC_gene_8687_tx_84 1 - 921471 922464 . 1 994 0 -chrXV 921471 922557 HC_gene_8687_tx_85 1 - 921471 922557 . 1 1087 0 -chrXV 921471 922686 HC_gene_8687_tx_86 1 - 921471 922686 . 1 1216 0 -chrXV 921471 922925 HC_gene_8687_tx_87 4 - 921471 922925 . 1 1455 0 -chrXV 921471 922925 HC_gene_8687_tx_88 1 - 921471 922925 . 2 548,822 0,633 -chrXV 921472 922925 HC_gene_8687_tx_89 1 - 921472 922925 . 1 1454 0 -chrXV 921476 922464 HC_gene_8687_tx_90 1 - 921476 922464 . 1 989 0 -chrXV 921476 922925 HC_gene_8687_tx_91 2 - 921476 922925 . 1 1450 0 -chrXV 921478 921785 HC_gene_8687_tx_160 1 - 921478 921785 . 1 308 0 -chrXV 921478 922557 HC_gene_8687_tx_92 1 - 921478 922557 . 1 1080 0 -chrXV 921478 922925 HC_gene_8687_tx_93 2 - 921478 922925 . 1 1448 0 -chrXV 921480 922925 HC_gene_8687_tx_94 2 - 921480 922925 . 1 1446 0 -chrXV 921481 922686 HC_gene_8687_tx_95 1 - 921481 922686 . 1 1206 0 -chrXV 921482 922374 HC_gene_8687_tx_96 1 - 921482 922374 . 1 893 0 -chrXV 921483 921785 HC_gene_8687_tx_161 1 - 921483 921785 . 1 303 0 -chrXV 921484 922374 HC_gene_8687_tx_97 1 - 921484 922374 . 1 891 0 -chrXV 921486 922686 HC_gene_8687_tx_98 1 - 921486 922686 . 1 1201 0 -chrXV 921486 922925 HC_gene_8687_tx_99 2 - 921486 922925 . 1 1440 0 -chrXV 921487 922925 HC_gene_8687_tx_100 2 - 921487 922925 . 1 1439 0 -chrXV 921489 922925 HC_gene_8687_tx_101 1 - 921489 922925 . 1 1437 0 -chrXV 921490 921785 HC_gene_8687_tx_162 2 - 921490 921785 . 1 296 0 -chrXV 921490 922085 HC_gene_8687_tx_138 1 - 921490 922085 . 1 596 0 -chrXV 921490 922925 HC_gene_8687_tx_102 5 - 921490 922925 . 1 1436 0 -chrXV 921494 922925 HC_gene_8687_tx_103 4 - 921494 922925 . 1 1432 0 -chrXV 921495 922557 HC_gene_8687_tx_104 1 - 921495 922557 . 1 1063 0 -chrXV 921495 922925 HC_gene_8687_tx_105 1 - 921495 922925 . 1 1431 0 -chrXV 921498 921785 HC_gene_8687_tx_163 1 - 921498 921785 . 1 288 0 -chrXV 921498 922374 HC_gene_8687_tx_106 1 - 921498 922374 . 1 877 0 -chrXV 921498 922557 HC_gene_8687_tx_107 1 - 921498 922557 . 1 1060 0 -chrXV 921498 922925 HC_gene_8687_tx_108 1 - 921498 922925 . 1 1428 0 -chrXV 921499 922464 HC_gene_8687_tx_109 1 - 921499 922464 . 1 966 0 -chrXV 921500 922085 HC_gene_8687_tx_139 2 - 921500 922085 . 1 586 0 -chrXV 921500 922158 HC_gene_8687_tx_140 1 - 921500 922158 . 1 659 0 -chrXV 921500 922925 HC_gene_8687_tx_110 2 - 921500 922925 . 1 1426 0 -chrXV 923076 923185 MC_gene_8244_tx_1 1 + 923076 923185 . 1 110 0 -chrXV 923095 925045 HC_gene_8688_tx_1 1 - 923095 925045 . 1 1951 0 -chrXV 923095 925185 HC_gene_8688_tx_2 1 - 923095 925185 . 1 2091 0 -chrXV 923101 925185 HC_gene_8688_tx_3 1 - 923101 925185 . 1 2085 0 -chrXV 923252 925045 HC_gene_8688_tx_4 1 - 923252 925045 . 1 1794 0 -chrXV 923301 923976 LC_gene_8245_tx_1 1 + 923301 923976 . 1 676 0 -chrXV 925540 930816 HC_gene_8246_tx_1 8 + 925540 930816 . 1 5277 0 -chrXV 925540 930816 HC_gene_8246_tx_2 1 + 925540 930816 . 2 3886,1304 0,3973 -chrXV 925540 930816 HC_gene_8246_tx_3 1 + 925540 930816 . 2 3967,1211 0,4066 -chrXV 925540 930816 HC_gene_8246_tx_4 1 + 925540 930816 . 3 185,2008,2929 0,280,2348 -chrXV 926954 930816 HC_gene_8246_tx_5 1 + 926954 930816 . 2 2809,998 0,2865 -chrXV 926954 930816 HC_gene_8246_tx_6 1 + 926954 930816 . 1 3863 0 -chrXV 928252 930816 HC_gene_8246_tx_7 3 + 928252 930816 . 1 2565 0 -chrXV 928408 930816 HC_gene_8246_tx_8 7 + 928408 930816 . 1 2409 0 -chrXV 928508 930816 HC_gene_8246_tx_9 3 + 928508 930816 . 1 2309 0 -chrXV 928593 930816 HC_gene_8246_tx_10 2 + 928593 930816 . 1 2224 0 -chrXV 928593 930816 HC_gene_8246_tx_11 1 + 928593 930816 . 2 1614,448 0,1776 -chrXV 928593 930816 HC_gene_8246_tx_12 1 + 928593 930816 . 2 1068,1080 0,1144 -chrXV 929741 930816 HC_gene_8246_tx_13 7 + 929741 930816 . 1 1076 0 -chrXV 929875 930219 LC_gene_8689_tx_1 1 - 929875 930219 . 1 345 0 -chrXV 930047 930816 HC_gene_8246_tx_14 18 + 930047 930816 . 1 770 0 -chrXV 930160 930816 HC_gene_8246_tx_15 25 + 930160 930816 . 1 657 0 -chrXV 930261 930816 HC_gene_8246_tx_16 19 + 930261 930816 . 1 556 0 -chrXV 930571 930816 HC_gene_8246_tx_17 13 + 930571 930816 . 1 246 0 -chrXV 930594 930922 HC_gene_8690_tx_1 73 - 930594 930922 . 1 329 0 -chrXV 930594 931164 HC_gene_8690_tx_2 530 - 930594 931164 . 1 571 0 -chrXV 930594 931164 HC_gene_8690_tx_3 2 - 930594 931164 . 2 344,129 0,442 -chrXV 931228 931730 MC_gene_8247_tx_1 1 + 931228 931730 . 1 503 0 -chrXV 932311 936650 MC_gene_8248_tx_1 1 + 932311 936650 . 1 4340 0 -chrXV 933179 936569 MC_gene_8248_tx_2 1 + 933179 936569 . 1 3391 0 -chrXV 933211 933770 MC_gene_8248_tx_4 1 + 933211 933770 . 1 560 0 -chrXV 933426 936725 MC_gene_8248_tx_3 1 + 933426 936725 . 1 3300 0 -chrXV 936627 937089 HC_gene_8691_tx_1 11 - 936627 937089 . 1 463 0 -chrXV 936627 937312 HC_gene_8691_tx_2 5 - 936627 937312 . 1 686 0 -chrXV 936627 937579 HC_gene_8691_tx_3 2 - 936627 937579 . 1 953 0 -chrXV 936627 937700 HC_gene_8691_tx_4 2 - 936627 937700 . 1 1074 0 -chrXV 936627 937908 HC_gene_8691_tx_5 1 - 936627 937908 . 2 443,198 0,1084 -chrXV 936627 938079 HC_gene_8691_tx_6 4 - 936627 938079 . 1 1453 0 -chrXV 936627 939418 HC_gene_8691_tx_7 5 - 936627 939418 . 1 2792 0 -chrXV 936627 939418 HC_gene_8691_tx_8 1 - 936627 939418 . 2 860,1003 0,1789 -chrXV 937349 939661 LC_gene_8249_tx_1 1 + 937349 939661 . 1 2313 0 -chrXV 939547 940014 MC_gene_8692_tx_1 1 - 939547 940014 . 1 468 0 -chrXV 939551 940180 MC_gene_8693_tx_1 1 - 939551 940180 . 1 630 0 -chrXV 940332 940954 MC_gene_8694_tx_1 1 - 940332 940954 . 1 623 0 -chrXV 943624 944427 HC_gene_8250_tx_1 551 + 943624 944427 . 1 804 0 -chrXV 943773 944427 HC_gene_8250_tx_2 36 + 943773 944427 . 1 655 0 -chrXV 943892 944362 LC_gene_8695_tx_1 1 - 943892 944362 . 1 471 0 -chrXV 943911 944427 HC_gene_8250_tx_3 110 + 943911 944427 . 1 517 0 -chrXV 944139 944427 HC_gene_8250_tx_4 42 + 944139 944427 . 1 289 0 -chrXV 944564 946176 HC_gene_8251_tx_1 5 + 944564 946176 . 1 1613 0 -chrXV 946005 946637 HC_gene_8696_tx_1 11 - 946005 946637 . 1 633 0 -chrXV 946005 946739 HC_gene_8696_tx_2 12 - 946005 946739 . 1 735 0 -chrXV 946005 946949 HC_gene_8696_tx_6 9 - 946005 946949 . 1 945 0 -chrXV 946005 947723 HC_gene_8696_tx_8 2 - 946005 947723 . 1 1719 0 -chrXV 946005 947789 HC_gene_8696_tx_9 2 - 946005 947789 . 1 1785 0 -chrXV 946005 947867 HC_gene_8696_tx_10 2 - 946005 947867 . 1 1863 0 -chrXV 946005 947929 HC_gene_8696_tx_11 1 - 946005 947929 . 1 1925 0 -chrXV 946005 948209 HC_gene_8696_tx_12 3 - 946005 948209 . 1 2205 0 -chrXV 946005 948370 HC_gene_8696_tx_13 3 - 946005 948370 . 1 2366 0 -chrXV 946005 948580 HC_gene_8696_tx_14 1 - 946005 948580 . 2 1057,1423 0,1153 -chrXV 946005 948580 HC_gene_8696_tx_15 1 - 946005 948580 . 1 2576 0 -chrXV 946005 948679 HC_gene_8696_tx_16 1 - 946005 948679 . 1 2675 0 -chrXV 946005 948892 HC_gene_8696_tx_17 1 - 946005 948892 . 2 1303,1518 0,1370 -chrXV 946005 949216 HC_gene_8696_tx_18 13 - 946005 949216 . 1 3212 0 -chrXV 946005 949216 HC_gene_8696_tx_19 1 - 946005 949216 . 2 414,2688 0,524 -chrXV 946005 949216 HC_gene_8696_tx_20 1 - 946005 949216 . 2 735,2022 0,1190 -chrXV 946085 946637 HC_gene_8696_tx_3 50 - 946085 946637 . 1 553 0 -chrXV 946085 946637 HC_gene_8696_tx_4 1 - 946085 946637 . 2 73,402 0,151 -chrXV 946085 946739 HC_gene_8696_tx_5 29 - 946085 946739 . 1 655 0 -chrXV 946085 946949 HC_gene_8696_tx_7 39 - 946085 946949 . 1 865 0 -chrXV 946085 947723 HC_gene_8696_tx_21 9 - 946085 947723 . 1 1639 0 -chrXV 946085 947789 HC_gene_8696_tx_22 2 - 946085 947789 . 1 1705 0 -chrXV 946085 947789 HC_gene_8696_tx_23 1 - 946085 947789 . 2 1316,278 0,1427 -chrXV 946085 947867 HC_gene_8696_tx_24 11 - 946085 947867 . 1 1783 0 -chrXV 946085 947929 HC_gene_8696_tx_25 10 - 946085 947929 . 1 1845 0 -chrXV 946085 948209 HC_gene_8696_tx_26 12 - 946085 948209 . 1 2125 0 -chrXV 946085 948209 HC_gene_8696_tx_27 1 - 946085 948209 . 2 1553,406 0,1719 -chrXV 946085 948209 HC_gene_8696_tx_28 1 - 946085 948209 . 2 847,1229 0,896 -chrXV 946085 948370 HC_gene_8696_tx_29 12 - 946085 948370 . 1 2286 0 -chrXV 946085 948509 HC_gene_8696_tx_30 2 - 946085 948509 . 1 2425 0 -chrXV 946085 948580 HC_gene_8696_tx_31 10 - 946085 948580 . 1 2496 0 -chrXV 946085 948679 HC_gene_8696_tx_32 4 - 946085 948679 . 1 2595 0 -chrXV 946085 948793 HC_gene_8696_tx_33 1 - 946085 948793 . 2 57,2582 0,127 -chrXV 946085 948793 HC_gene_8696_tx_34 1 - 946085 948793 . 2 1231,1341 0,1368 -chrXV 946085 948793 HC_gene_8696_tx_35 3 - 946085 948793 . 1 2709 0 -chrXV 946085 948892 HC_gene_8696_tx_36 1 - 946085 948892 . 2 2275,300 0,2508 -chrXV 946085 948892 HC_gene_8696_tx_37 1 - 946085 948892 . 2 936,1261 0,1547 -chrXV 946085 948892 HC_gene_8696_tx_38 3 - 946085 948892 . 1 2808 0 -chrXV 946085 948892 HC_gene_8696_tx_39 1 - 946085 948892 . 2 1217,1518 0,1290 -chrXV 946085 949216 HC_gene_8696_tx_40 48 - 946085 949216 . 1 3132 0 -chrXV 946085 949216 HC_gene_8696_tx_41 1 - 946085 949216 . 2 1201,1805 0,1327 -chrXV 946085 949216 HC_gene_8696_tx_42 1 - 946085 949216 . 2 1204,1877 0,1255 -chrXV 946085 949216 HC_gene_8696_tx_43 1 - 946085 949216 . 2 1766,1287 0,1845 -chrXV 946085 949216 HC_gene_8696_tx_44 1 - 946085 949216 . 2 63,2939 0,193 -chrXV 946085 949216 HC_gene_8696_tx_45 1 - 946085 949216 . 2 1002,2022 0,1110 -chrXV 949753 953992 HC_gene_8252_tx_1 1 + 949753 953992 . 2 4118,26 0,4214 -chrXV 952265 953675 LC_gene_8697_tx_1 1 - 952265 953675 . 1 1411 0 -chrXV 954211 956903 HC_gene_8253_tx_1 1 + 954211 956903 . 2 1370,528 0,2165 -chrXV 954211 956903 HC_gene_8253_tx_2 3 + 954211 956903 . 1 2693 0 -chrXV 954211 956903 HC_gene_8253_tx_3 1 + 954211 956903 . 2 1492,1120 0,1573 -chrXV 954211 956903 HC_gene_8253_tx_4 1 + 954211 956903 . 2 1370,1073 0,1620 -chrXV 954315 956903 HC_gene_8253_tx_5 11 + 954315 956903 . 1 2589 0 -chrXV 954315 956903 HC_gene_8253_tx_6 1 + 954315 956903 . 2 906,1617 0,972 -chrXV 954315 956903 HC_gene_8253_tx_7 1 + 954315 956903 . 2 2459,84 0,2505 -chrXV 956804 957689 LC_gene_8698_tx_1 1 - 956804 957689 . 1 886 0 -chrXV 956834 958243 HC_gene_8254_tx_1 20 + 956834 958243 . 1 1410 0 -chrXV 958139 960201 HC_gene_8699_tx_1 2 - 958139 960201 . 1 2063 0 -chrXV 958393 960283 MC_gene_8255_tx_1 1 + 958393 960283 . 1 1891 0 -chrXV 958989 960201 HC_gene_8699_tx_2 1 - 958989 960201 . 1 1213 0 -chrXV 959002 959947 HC_gene_8699_tx_61 1 - 959002 959947 . 1 946 0 -chrXV 959002 960201 HC_gene_8699_tx_3 1 - 959002 960201 . 1 1200 0 -chrXV 959017 959947 HC_gene_8699_tx_62 1 - 959017 959947 . 1 931 0 -chrXV 959017 960201 HC_gene_8699_tx_4 5 - 959017 960201 . 1 1185 0 -chrXV 959020 960201 HC_gene_8699_tx_5 1 - 959020 960201 . 1 1182 0 -chrXV 959024 960201 HC_gene_8699_tx_6 1 - 959024 960201 . 1 1178 0 -chrXV 959025 960201 HC_gene_8699_tx_7 1 - 959025 960201 . 1 1177 0 -chrXV 959027 960201 HC_gene_8699_tx_8 4 - 959027 960201 . 1 1175 0 -chrXV 959028 960201 HC_gene_8699_tx_9 2 - 959028 960201 . 1 1174 0 -chrXV 959029 959444 HC_gene_8699_tx_70 1 - 959029 959444 . 1 416 0 -chrXV 959029 960201 HC_gene_8699_tx_10 4 - 959029 960201 . 1 1173 0 -chrXV 959030 959947 HC_gene_8699_tx_63 1 - 959030 959947 . 1 918 0 -chrXV 959032 959444 HC_gene_8699_tx_71 1 - 959032 959444 . 1 413 0 -chrXV 959032 960201 HC_gene_8699_tx_11 3 - 959032 960201 . 1 1170 0 -chrXV 959033 960201 HC_gene_8699_tx_12 4 - 959033 960201 . 1 1169 0 -chrXV 959034 959444 HC_gene_8699_tx_72 1 - 959034 959444 . 1 411 0 -chrXV 959034 959947 HC_gene_8699_tx_64 1 - 959034 959947 . 1 914 0 -chrXV 959034 960201 HC_gene_8699_tx_13 4 - 959034 960201 . 1 1168 0 -chrXV 959037 959444 HC_gene_8699_tx_73 1 - 959037 959444 . 1 408 0 -chrXV 959037 960201 HC_gene_8699_tx_14 1 - 959037 960201 . 1 1165 0 -chrXV 959039 959444 HC_gene_8699_tx_74 2 - 959039 959444 . 1 406 0 -chrXV 959039 960201 HC_gene_8699_tx_15 4 - 959039 960201 . 1 1163 0 -chrXV 959040 960201 HC_gene_8699_tx_16 5 - 959040 960201 . 1 1162 0 -chrXV 959041 960201 HC_gene_8699_tx_17 1 - 959041 960201 . 1 1161 0 -chrXV 959042 960201 HC_gene_8699_tx_18 3 - 959042 960201 . 1 1160 0 -chrXV 959043 959444 HC_gene_8699_tx_75 1 - 959043 959444 . 1 402 0 -chrXV 959043 960201 HC_gene_8699_tx_19 2 - 959043 960201 . 1 1159 0 -chrXV 959044 960201 HC_gene_8699_tx_20 1 - 959044 960201 . 1 1158 0 -chrXV 959045 960201 HC_gene_8699_tx_21 1 - 959045 960201 . 1 1157 0 -chrXV 959046 959444 HC_gene_8699_tx_76 2 - 959046 959444 . 1 399 0 -chrXV 959048 960201 HC_gene_8699_tx_22 1 - 959048 960201 . 1 1154 0 -chrXV 959049 960201 HC_gene_8699_tx_23 2 - 959049 960201 . 1 1153 0 -chrXV 959050 960201 HC_gene_8699_tx_24 3 - 959050 960201 . 1 1152 0 -chrXV 959054 960201 HC_gene_8699_tx_25 1 - 959054 960201 . 1 1148 0 -chrXV 959056 960201 HC_gene_8699_tx_26 1 - 959056 960201 . 1 1146 0 -chrXV 959057 960201 HC_gene_8699_tx_27 1 - 959057 960201 . 1 1145 0 -chrXV 959058 960201 HC_gene_8699_tx_28 1 - 959058 960201 . 1 1144 0 -chrXV 959060 960201 HC_gene_8699_tx_29 1 - 959060 960201 . 1 1142 0 -chrXV 959061 960201 HC_gene_8699_tx_30 5 - 959061 960201 . 1 1141 0 -chrXV 959062 959444 HC_gene_8699_tx_77 1 - 959062 959444 . 1 383 0 -chrXV 959062 960201 HC_gene_8699_tx_31 2 - 959062 960201 . 1 1140 0 -chrXV 959063 960201 HC_gene_8699_tx_32 3 - 959063 960201 . 1 1139 0 -chrXV 959064 960201 HC_gene_8699_tx_33 2 - 959064 960201 . 1 1138 0 -chrXV 959067 959947 HC_gene_8699_tx_65 1 - 959067 959947 . 1 881 0 -chrXV 959067 960201 HC_gene_8699_tx_34 1 - 959067 960201 . 1 1135 0 -chrXV 959071 959444 HC_gene_8699_tx_78 1 - 959071 959444 . 1 374 0 -chrXV 959071 960201 HC_gene_8699_tx_35 2 - 959071 960201 . 1 1131 0 -chrXV 959072 960201 HC_gene_8699_tx_36 2 - 959072 960201 . 1 1130 0 -chrXV 959073 960201 HC_gene_8699_tx_37 1 - 959073 960201 . 1 1129 0 -chrXV 959078 960201 HC_gene_8699_tx_38 1 - 959078 960201 . 1 1124 0 -chrXV 959080 959947 HC_gene_8699_tx_66 2 - 959080 959947 . 1 868 0 -chrXV 959080 960201 HC_gene_8699_tx_39 4 - 959080 960201 . 1 1122 0 -chrXV 959081 960201 HC_gene_8699_tx_40 1 - 959081 960201 . 1 1121 0 -chrXV 959082 959444 HC_gene_8699_tx_79 2 - 959082 959444 . 1 363 0 -chrXV 959082 959947 HC_gene_8699_tx_67 2 - 959082 959947 . 1 866 0 -chrXV 959082 960201 HC_gene_8699_tx_41 5 - 959082 960201 . 1 1120 0 -chrXV 959083 959444 HC_gene_8699_tx_80 1 - 959083 959444 . 1 362 0 -chrXV 959083 960201 HC_gene_8699_tx_42 2 - 959083 960201 . 1 1119 0 -chrXV 959084 960201 HC_gene_8699_tx_43 1 - 959084 960201 . 1 1118 0 -chrXV 959086 960201 HC_gene_8699_tx_44 1 - 959086 960201 . 1 1116 0 -chrXV 959088 959444 HC_gene_8699_tx_81 2 - 959088 959444 . 1 357 0 -chrXV 959088 959947 HC_gene_8699_tx_68 1 - 959088 959947 . 1 860 0 -chrXV 959088 960201 HC_gene_8699_tx_45 4 - 959088 960201 . 1 1114 0 -chrXV 959089 959444 HC_gene_8699_tx_82 1 - 959089 959444 . 1 356 0 -chrXV 959089 960201 HC_gene_8699_tx_46 2 - 959089 960201 . 1 1113 0 -chrXV 959090 960201 HC_gene_8699_tx_47 3 - 959090 960201 . 1 1112 0 -chrXV 959092 960201 HC_gene_8699_tx_48 3 - 959092 960201 . 1 1110 0 -chrXV 959093 959444 HC_gene_8699_tx_83 1 - 959093 959444 . 1 352 0 -chrXV 959093 960201 HC_gene_8699_tx_49 2 - 959093 960201 . 1 1109 0 -chrXV 959094 959444 HC_gene_8699_tx_84 2 - 959094 959444 . 1 351 0 -chrXV 959094 960201 HC_gene_8699_tx_50 2 - 959094 960201 . 1 1108 0 -chrXV 959097 960201 HC_gene_8699_tx_51 4 - 959097 960201 . 1 1105 0 -chrXV 959098 959444 HC_gene_8699_tx_85 1 - 959098 959444 . 1 347 0 -chrXV 959103 959444 HC_gene_8699_tx_86 1 - 959103 959444 . 1 342 0 -chrXV 959103 959947 HC_gene_8699_tx_69 1 - 959103 959947 . 1 845 0 -chrXV 959103 960201 HC_gene_8699_tx_52 4 - 959103 960201 . 1 1099 0 -chrXV 959104 959444 HC_gene_8699_tx_87 1 - 959104 959444 . 1 341 0 -chrXV 959104 960201 HC_gene_8699_tx_53 12 - 959104 960201 . 1 1098 0 -chrXV 959104 960201 HC_gene_8699_tx_54 1 - 959104 960201 . 2 701,287 0,811 -chrXV 959105 960201 HC_gene_8699_tx_55 3 - 959105 960201 . 1 1097 0 -chrXV 959106 959444 HC_gene_8699_tx_88 1 - 959106 959444 . 1 339 0 -chrXV 959106 960201 HC_gene_8699_tx_56 8 - 959106 960201 . 1 1096 0 -chrXV 959107 960201 HC_gene_8699_tx_57 2 - 959107 960201 . 1 1095 0 -chrXV 959108 959444 HC_gene_8699_tx_89 1 - 959108 959444 . 1 337 0 -chrXV 959108 960201 HC_gene_8699_tx_58 2 - 959108 960201 . 1 1094 0 -chrXV 959109 959444 HC_gene_8699_tx_90 2 - 959109 959444 . 1 336 0 -chrXV 959109 960201 HC_gene_8699_tx_59 2 - 959109 960201 . 1 1093 0 -chrXV 959110 960201 HC_gene_8699_tx_60 1 - 959110 960201 . 1 1092 0 -chrXV 960879 966119 HC_gene_8256_tx_1 1 + 960879 966119 . 1 5241 0 -chrXV 960879 966265 HC_gene_8256_tx_2 10 + 960879 966265 . 1 5387 0 -chrXV 960960 966265 HC_gene_8256_tx_3 1 + 960960 966265 . 1 5306 0 -chrXV 961128 966265 HC_gene_8256_tx_4 2 + 961128 966265 . 1 5138 0 -chrXV 961602 966265 HC_gene_8256_tx_5 2 + 961602 966265 . 1 4664 0 -chrXV 961677 966265 HC_gene_8256_tx_6 1 + 961677 966265 . 1 4589 0 -chrXV 962043 966265 HC_gene_8256_tx_7 1 + 962043 966265 . 2 2857,1285 0,2938 -chrXV 962043 966265 HC_gene_8256_tx_8 1 + 962043 966265 . 1 4223 0 -chrXV 962331 966265 HC_gene_8256_tx_9 1 + 962331 966265 . 2 1686,2155 0,1780 -chrXV 963018 966265 HC_gene_8256_tx_10 4 + 963018 966265 . 1 3248 0 -chrXV 963268 966265 HC_gene_8256_tx_11 1 + 963268 966265 . 2 2509,426 0,2572 -chrXV 963268 966265 HC_gene_8256_tx_12 1 + 963268 966265 . 1 2998 0 -chrXV 964113 966033 HC_gene_8256_tx_13 1 + 964113 966033 . 1 1921 0 -chrXV 964113 966050 HC_gene_8256_tx_14 1 + 964113 966050 . 1 1938 0 -chrXV 964113 966265 HC_gene_8256_tx_15 23 + 964113 966265 . 1 2153 0 -chrXV 964113 966265 HC_gene_8256_tx_16 1 + 964113 966265 . 2 1170,490 0,1663 -chrXV 964488 966119 HC_gene_8256_tx_17 1 + 964488 966119 . 1 1632 0 -chrXV 964488 966265 HC_gene_8256_tx_18 13 + 964488 966265 . 1 1778 0 -chrXV 964488 966265 HC_gene_8256_tx_19 1 + 964488 966265 . 2 1059,654 0,1124 -chrXV 964836 966119 HC_gene_8256_tx_20 1 + 964836 966119 . 2 733,429 0,855 -chrXV 964836 966265 HC_gene_8256_tx_21 10 + 964836 966265 . 1 1430 0 -chrXV 965129 966033 HC_gene_8256_tx_22 1 + 965129 966033 . 1 905 0 -chrXV 965129 966119 HC_gene_8256_tx_23 3 + 965129 966119 . 1 991 0 -chrXV 965129 966265 HC_gene_8256_tx_24 22 + 965129 966265 . 1 1137 0 -chrXV 965129 966605 HC_gene_8256_tx_25 1 + 965129 966605 . 1 1477 0 -chrXV 965586 966265 HC_gene_8256_tx_26 45 + 965586 966265 . 1 680 0 -chrXV 965915 966265 HC_gene_8256_tx_27 64 + 965915 966265 . 1 351 0 -chrXV 965915 966605 HC_gene_8256_tx_28 2 + 965915 966605 . 1 691 0 -chrXV 966507 966838 HC_gene_8700_tx_1 17 - 966507 966838 . 1 332 0 -chrXV 966507 967034 HC_gene_8700_tx_2 30 - 966507 967034 . 1 528 0 -chrXV 966507 967371 HC_gene_8700_tx_3 22 - 966507 967371 . 1 865 0 -chrXV 966507 967748 HC_gene_8700_tx_4 134 - 966507 967748 . 1 1242 0 -chrXV 966507 967748 HC_gene_8700_tx_5 1 - 966507 967748 . 2 509,526 0,716 -chrXV 966507 967748 HC_gene_8700_tx_6 1 - 966507 967748 . 2 336,160 0,1082 -chrXV 966507 967939 HC_gene_8700_tx_7 7 - 966507 967939 . 1 1433 0 -chrXV 966507 968057 HC_gene_8700_tx_8 2 - 966507 968057 . 1 1551 0 -chrXV 966507 968645 HC_gene_8700_tx_9 2 - 966507 968645 . 1 2139 0 -chrXV 966507 968893 HC_gene_8700_tx_10 5 - 966507 968893 . 1 2387 0 -chrXV 967159 967748 HC_gene_8700_tx_11 1 - 967159 967748 . 1 590 0 -chrXV 968094 968800 LC_gene_8257_tx_1 1 + 968094 968800 . 1 707 0 -chrXV 968808 969295 HC_gene_8258_tx_1 5 + 968808 969295 . 1 488 0 -chrXV 968980 969295 HC_gene_8258_tx_2 3 + 968980 969295 . 1 316 0 -chrXV 969088 969487 HC_gene_8701_tx_1 1 - 969088 969487 . 1 400 0 -chrXV 969140 969601 HC_gene_8259_tx_1 1 + 969140 969601 . 1 462 0 -chrXV 969172 969596 HC_gene_8702_tx_1 2 - 969172 969596 . 1 425 0 -chrXV 969172 970034 HC_gene_8702_tx_2 2 - 969172 970034 . 1 863 0 -chrXV 969223 969601 HC_gene_8259_tx_2 1 + 969223 969601 . 1 379 0 -chrXV 969223 969874 HC_gene_8260_tx_1 4 + 969223 969874 . 1 652 0 -chrXV 969223 970616 HC_gene_8260_tx_2 14 + 969223 970616 . 1 1394 0 -chrXV 969531 970034 HC_gene_8702_tx_3 12 - 969531 970034 . 1 504 0 -chrXV 969745 970616 HC_gene_8260_tx_3 10 + 969745 970616 . 1 872 0 -chrXV 969851 970616 HC_gene_8260_tx_4 2 + 969851 970616 . 1 766 0 -chrXV 969927 970616 HC_gene_8260_tx_5 5 + 969927 970616 . 1 690 0 -chrXV 970272 970616 HC_gene_8260_tx_6 3 + 970272 970616 . 1 345 0 -chrXV 970533 971249 LC_gene_8703_tx_1 1 - 970533 971249 . 1 717 0 -chrXV 973758 976247 HC_gene_8261_tx_1 2 + 973758 976247 . 1 2490 0 -chrXV 976563 976815 HC_gene_8704_tx_1 1 - 976563 976815 . 1 253 0 -chrXV 976563 977081 HC_gene_8704_tx_2 40 - 976563 977081 . 1 519 0 -chrXV 976563 977236 HC_gene_8704_tx_3 23 - 976563 977236 . 1 674 0 -chrXV 976563 977295 HC_gene_8704_tx_4 53 - 976563 977295 . 1 733 0 -chrXV 976563 977557 HC_gene_8704_tx_7 17 - 976563 977557 . 1 995 0 -chrXV 976563 977557 HC_gene_8704_tx_8 1 - 976563 977557 . 2 829,115 0,880 -chrXV 976563 977689 HC_gene_8704_tx_9 21 - 976563 977689 . 1 1127 0 -chrXV 976563 977817 HC_gene_8704_tx_10 14 - 976563 977817 . 1 1255 0 -chrXV 976563 978114 HC_gene_8704_tx_11 4 - 976563 978114 . 1 1552 0 -chrXV 976563 978202 HC_gene_8704_tx_12 71 - 976563 978202 . 1 1640 0 -chrXV 976563 978202 HC_gene_8704_tx_13 1 - 976563 978202 . 2 1081,194 0,1446 -chrXV 976563 978202 HC_gene_8704_tx_14 1 - 976563 978202 . 2 384,767 0,873 -chrXV 976563 978202 HC_gene_8704_tx_15 1 - 976563 978202 . 2 1279,261 0,1379 -chrXV 976563 978202 HC_gene_8704_tx_16 1 - 976563 978202 . 2 735,839 0,801 -chrXV 976563 978202 HC_gene_8704_tx_17 1 - 976563 978202 . 2 235,1347 0,293 -chrXV 976563 978202 HC_gene_8704_tx_18 1 - 976563 978202 . 2 1417,140 0,1500 -chrXV 976563 978202 HC_gene_8704_tx_19 1 - 976563 978202 . 2 1054,264 0,1376 -chrXV 976706 977081 HC_gene_8704_tx_38 12 - 976706 977081 . 1 376 0 -chrXV 976706 977236 HC_gene_8704_tx_5 6 - 976706 977236 . 1 531 0 -chrXV 976706 977295 HC_gene_8704_tx_6 17 - 976706 977295 . 1 590 0 -chrXV 976706 977557 HC_gene_8704_tx_20 10 - 976706 977557 . 1 852 0 -chrXV 976706 977689 HC_gene_8704_tx_21 6 - 976706 977689 . 1 984 0 -chrXV 976706 977689 HC_gene_8704_tx_22 1 - 976706 977689 . 2 510,350 0,634 -chrXV 976706 977817 HC_gene_8704_tx_23 4 - 976706 977817 . 1 1112 0 -chrXV 976706 978114 HC_gene_8704_tx_24 3 - 976706 978114 . 1 1409 0 -chrXV 976706 978129 HC_gene_8704_tx_25 1 - 976706 978129 . 2 818,32 0,1392 -chrXV 976706 978202 HC_gene_8704_tx_26 44 - 976706 978202 . 1 1497 0 -chrXV 976706 978202 HC_gene_8704_tx_27 1 - 976706 978202 . 2 114,1269 0,228 -chrXV 976854 977295 HC_gene_8704_tx_39 1 - 976854 977295 . 1 442 0 -chrXV 976856 978202 HC_gene_8704_tx_28 1 - 976856 978202 . 1 1347 0 -chrXV 976857 977236 HC_gene_8704_tx_40 1 - 976857 977236 . 1 380 0 -chrXV 976864 977236 HC_gene_8704_tx_41 1 - 976864 977236 . 1 373 0 -chrXV 976866 977689 HC_gene_8704_tx_29 1 - 976866 977689 . 1 824 0 -chrXV 976873 978114 HC_gene_8704_tx_30 1 - 976873 978114 . 1 1242 0 -chrXV 976877 977557 HC_gene_8704_tx_31 1 - 976877 977557 . 1 681 0 -chrXV 976877 977689 HC_gene_8704_tx_32 1 - 976877 977689 . 1 813 0 -chrXV 976878 977295 HC_gene_8704_tx_42 1 - 976878 977295 . 1 418 0 -chrXV 976878 977557 HC_gene_8704_tx_33 1 - 976878 977557 . 1 680 0 -chrXV 976878 978114 HC_gene_8704_tx_34 1 - 976878 978114 . 1 1237 0 -chrXV 976879 977817 HC_gene_8704_tx_35 1 - 976879 977817 . 1 939 0 -chrXV 976881 977689 HC_gene_8704_tx_36 1 - 976881 977689 . 1 809 0 -chrXV 976884 977295 HC_gene_8704_tx_43 1 - 976884 977295 . 1 412 0 -chrXV 976888 977557 HC_gene_8704_tx_37 1 - 976888 977557 . 1 670 0 -chrXV 976979 977309 MC_gene_8262_tx_1 1 + 976979 977309 . 1 331 0 -chrXV 978487 979741 HC_gene_8263_tx_1 1 + 978487 979741 . 1 1255 0 -chrXV 979468 979741 HC_gene_8263_tx_2 1 + 979468 979741 . 1 274 0 -chrXV 979714 980094 HC_gene_8264_tx_1 2 + 979714 980094 . 1 381 0 -chrXV 980867 981472 HC_gene_8705_tx_1 6 - 980867 981472 . 1 606 0 -chrXV 980872 981122 HC_gene_8265_tx_1 2 + 980872 981122 . 1 251 0 -chrXV 981046 981472 HC_gene_8705_tx_2 60 - 981046 981472 . 1 427 0 -chrXV 981046 981472 HC_gene_8705_tx_3 1 - 981046 981472 . 2 107,274 0,153 -chrXV 981664 984941 HC_gene_8266_tx_1 7 + 981664 984941 . 1 3278 0 -chrXV 984007 984941 HC_gene_8266_tx_2 4 + 984007 984941 . 1 935 0 -chrXV 984134 986479 HC_gene_8706_tx_1 4 - 984134 986479 . 1 2346 0 -chrXV 984343 986479 HC_gene_8706_tx_2 2 - 984343 986479 . 1 2137 0 -chrXV 984343 986479 HC_gene_8706_tx_3 1 - 984343 986479 . 2 1086,300 0,1837 -chrXV 984527 986479 HC_gene_8706_tx_4 1 - 984527 986479 . 1 1953 0 -chrXV 984877 986479 HC_gene_8706_tx_5 3 - 984877 986479 . 1 1603 0 -chrXV 984878 986479 HC_gene_8706_tx_6 1 - 984878 986479 . 1 1602 0 -chrXV 984879 986479 HC_gene_8706_tx_7 1 - 984879 986479 . 1 1601 0 -chrXV 984881 986479 HC_gene_8706_tx_8 1 - 984881 986479 . 1 1599 0 -chrXV 986720 988801 HC_gene_8707_tx_1 2 - 986720 988801 . 1 2082 0 -chrXV 988113 989025 MC_gene_8267_tx_1 1 + 988113 989025 . 1 913 0 -chrXV 988869 989450 MC_gene_8708_tx_1 1 - 988869 989450 . 1 582 0 -chrXV 989640 990126 HC_gene_8268_tx_1 1 + 989640 990126 . 1 487 0 -chrXV 989764 990126 HC_gene_8268_tx_2 5 + 989764 990126 . 1 363 0 -chrXV 989764 992996 HC_gene_8268_tx_3 4 + 989764 992996 . 1 3233 0 -chrXV 991583 992591 MC_gene_8709_tx_1 1 - 991583 992591 . 1 1009 0 -chrXV 992794 994892 HC_gene_8710_tx_1 4 - 992794 994892 . 1 2099 0 -chrXV 995072 996928 MC_gene_8269_tx_1 1 + 995072 996928 . 1 1857 0 -chrXV 997137 998323 HC_gene_8270_tx_1 6 + 997137 998323 . 1 1187 0 -chrXV 997137 998438 HC_gene_8270_tx_2 10 + 997137 998438 . 1 1302 0 -chrXV 997685 998323 HC_gene_8270_tx_3 4 + 997685 998323 . 1 639 0 -chrXV 998304 1000843 HC_gene_8711_tx_1 11 - 998304 1000843 . 1 2540 0 -chrXV 998841 1000843 HC_gene_8711_tx_2 1 - 998841 1000843 . 1 2003 0 -chrXV 1001013 1001938 HC_gene_8712_tx_1 5 - 1001013 1001938 . 1 926 0 -chrXV 1001013 1002730 HC_gene_8712_tx_2 2 - 1001013 1002730 . 1 1718 0 -chrXV 1001013 1003248 HC_gene_8712_tx_3 19 - 1001013 1003248 . 1 2236 0 -chrXV 1001164 1002089 LC_gene_8271_tx_1 1 + 1001164 1002089 . 1 926 0 -chrXV 1002654 1003248 HC_gene_8712_tx_4 1 - 1002654 1003248 . 1 595 0 -chrXV 1003527 1003913 MC_gene_8272_tx_1 1 + 1003527 1003913 . 1 387 0 -chrXV 1003546 1003766 HC_gene_8713_tx_1 2 - 1003546 1003766 . 1 221 0 -chrXV 1003546 1004071 HC_gene_8713_tx_2 1 - 1003546 1004071 . 1 526 0 -chrXV 1003546 1004164 HC_gene_8713_tx_3 1 - 1003546 1004164 . 1 619 0 -chrXV 1003958 1004473 HC_gene_8273_tx_1 18 + 1003958 1004473 . 1 516 0 -chrXV 1003958 1004612 HC_gene_8273_tx_2 36 + 1003958 1004612 . 1 655 0 -chrXV 1003958 1004848 HC_gene_8273_tx_4 2 + 1003958 1004848 . 1 891 0 -chrXV 1003958 1005025 HC_gene_8273_tx_5 3 + 1003958 1005025 . 1 1068 0 -chrXV 1003970 1004612 HC_gene_8273_tx_3 1 + 1003970 1004612 . 1 643 0 -chrXV 1004645 1006793 HC_gene_8274_tx_1 1 + 1004645 1006793 . 2 1326,717 0,1432 -chrXV 1004645 1006793 HC_gene_8274_tx_2 4 + 1004645 1006793 . 1 2149 0 -chrXV 1004645 1006894 HC_gene_8274_tx_3 42 + 1004645 1006894 . 1 2250 0 -chrXV 1004645 1006894 HC_gene_8274_tx_4 1 + 1004645 1006894 . 2 417,1674 0,576 -chrXV 1004884 1006894 HC_gene_8274_tx_5 10 + 1004884 1006894 . 1 2011 0 -chrXV 1004884 1006894 HC_gene_8274_tx_6 1 + 1004884 1006894 . 2 1049,890 0,1121 -chrXV 1004953 1006894 HC_gene_8274_tx_7 4 + 1004953 1006894 . 1 1942 0 -chrXV 1005698 1006894 HC_gene_8274_tx_8 10 + 1005698 1006894 . 1 1197 0 -chrXV 1006789 1007975 LC_gene_8714_tx_1 1 - 1006789 1007975 . 1 1187 0 -chrXV 1007194 1009235 HC_gene_8275_tx_1 37 + 1007194 1009235 . 1 2042 0 -chrXV 1007194 1009235 HC_gene_8275_tx_2 1 + 1007194 1009235 . 2 293,609 0,1433 -chrXV 1007194 1009235 HC_gene_8275_tx_3 1 + 1007194 1009235 . 3 591,844,411 0,693,1631 -chrXV 1007676 1009235 HC_gene_8275_tx_4 8 + 1007676 1009235 . 1 1560 0 -chrXV 1007855 1009235 HC_gene_8275_tx_5 7 + 1007855 1009235 . 1 1381 0 -chrXV 1008188 1009235 HC_gene_8275_tx_6 7 + 1008188 1009235 . 1 1048 0 -chrXV 1008370 1009235 HC_gene_8275_tx_7 10 + 1008370 1009235 . 1 866 0 -chrXV 1008689 1009235 HC_gene_8275_tx_8 13 + 1008689 1009235 . 1 547 0 -chrXV 1008777 1009235 HC_gene_8275_tx_9 17 + 1008777 1009235 . 1 459 0 -chrXV 1008982 1009730 HC_gene_8715_tx_1 5 - 1008982 1009730 . 1 749 0 -chrXV 1009113 1009730 HC_gene_8715_tx_2 112 - 1009113 1009730 . 1 618 0 -chrXV 1009971 1011202 HC_gene_8276_tx_1 1 + 1009971 1011202 . 1 1232 0 -chrXV 1009973 1011202 HC_gene_8276_tx_2 1 + 1009973 1011202 . 1 1230 0 -chrXV 1010116 1011202 HC_gene_8276_tx_3 1 + 1010116 1011202 . 1 1087 0 -chrXV 1010124 1011202 HC_gene_8276_tx_4 17 + 1010124 1011202 . 1 1079 0 -chrXV 1010136 1011202 HC_gene_8276_tx_5 1 + 1010136 1011202 . 1 1067 0 -chrXV 1010139 1011202 HC_gene_8276_tx_6 1 + 1010139 1011202 . 1 1064 0 -chrXV 1010157 1011202 HC_gene_8276_tx_7 1 + 1010157 1011202 . 1 1046 0 -chrXV 1010316 1011202 HC_gene_8276_tx_8 4 + 1010316 1011202 . 1 887 0 -chrXV 1010378 1010827 LC_gene_8716_tx_1 1 - 1010378 1010827 . 1 450 0 -chrXV 1011069 1012890 HC_gene_8277_tx_1 1 + 1011069 1012890 . 2 235,1298 0,524 -chrXV 1011069 1012890 HC_gene_8277_tx_2 8 + 1011069 1012890 . 1 1822 0 -chrXV 1011069 1012890 HC_gene_8277_tx_3 1 + 1011069 1012890 . 2 354,1404 0,418 -chrXV 1011069 1012890 HC_gene_8277_tx_4 1 + 1011069 1012890 . 2 175,1460 0,362 -chrXV 1011069 1012974 HC_gene_8277_tx_5 20 + 1011069 1012974 . 1 1906 0 -chrXV 1011069 1013069 HC_gene_8277_tx_6 6 + 1011069 1013069 . 1 2001 0 -chrXV 1011069 1013069 HC_gene_8277_tx_7 1 + 1011069 1013069 . 2 1069,703 0,1298 -chrXV 1011069 1013069 HC_gene_8277_tx_8 1 + 1011069 1013069 . 2 655,1151 0,850 -chrXV 1011173 1012890 HC_gene_8277_tx_9 1 + 1011173 1012890 . 1 1718 0 -chrXV 1011173 1012974 HC_gene_8277_tx_10 2 + 1011173 1012974 . 1 1802 0 -chrXV 1013113 1014649 HC_gene_8717_tx_1 6 - 1013113 1014649 . 1 1537 0 -chrXV 1013113 1015054 HC_gene_8717_tx_2 48 - 1013113 1015054 . 1 1942 0 -chrXV 1013113 1015054 HC_gene_8717_tx_3 1 - 1013113 1015054 . 2 1102,163 0,1779 -chrXV 1015273 1015610 HC_gene_8718_tx_1 55 - 1015273 1015610 . 1 338 0 -chrXV 1015273 1015982 HC_gene_8718_tx_2 79 - 1015273 1015982 . 1 710 0 -chrXV 1015273 1015982 HC_gene_8718_tx_3 1 - 1015273 1015982 . 2 350,236 0,474 -chrXV 1015273 1016380 HC_gene_8718_tx_4 29 - 1015273 1016380 . 1 1108 0 -chrXV 1015273 1016898 HC_gene_8718_tx_5 7 - 1015273 1016898 . 1 1626 0 -chrXV 1015273 1016898 HC_gene_8718_tx_6 1 - 1015273 1016898 . 2 888,432 0,1194 -chrXV 1015273 1016898 HC_gene_8718_tx_7 1 - 1015273 1016898 . 2 1194,145 0,1481 -chrXV 1015273 1017571 HC_gene_8718_tx_8 53 - 1015273 1017571 . 1 2299 0 -chrXV 1015273 1017571 HC_gene_8718_tx_9 1 - 1015273 1017571 . 2 837,1239 0,1060 -chrXV 1015273 1017571 HC_gene_8718_tx_10 1 - 1015273 1017571 . 2 983,1182 0,1117 -chrXV 1015273 1017571 HC_gene_8718_tx_11 1 - 1015273 1017571 . 2 457,1690 0,609 -chrXV 1015273 1017571 HC_gene_8718_tx_12 1 - 1015273 1017571 . 3 485,481,387 0,1381,1912 -chrXV 1015273 1017571 HC_gene_8718_tx_13 1 - 1015273 1017571 . 2 810,918 0,1381 -chrXV 1015273 1017571 HC_gene_8718_tx_14 1 - 1015273 1017571 . 2 752,328 0,1971 -chrXV 1015273 1017571 HC_gene_8718_tx_15 1 - 1015273 1017571 . 2 1224,653 0,1646 -chrXV 1015273 1017571 HC_gene_8718_tx_16 1 - 1015273 1017571 . 2 1193,764 0,1535 -chrXV 1015273 1017571 HC_gene_8718_tx_17 1 - 1015273 1017571 . 2 923,328 0,1971 -chrXV 1017515 1018049 HC_gene_8719_tx_1 3 - 1017515 1018049 . 1 535 0 -chrXV 1017515 1018158 HC_gene_8719_tx_2 2 - 1017515 1018158 . 1 644 0 -chrXV 1017515 1018271 HC_gene_8719_tx_3 3 - 1017515 1018271 . 1 757 0 -chrXV 1017515 1018790 HC_gene_8719_tx_4 11 - 1017515 1018790 . 1 1276 0 -chrXV 1017743 1018049 HC_gene_8719_tx_11 29 - 1017743 1018049 . 1 307 0 -chrXV 1017743 1018158 HC_gene_8719_tx_12 22 - 1017743 1018158 . 1 416 0 -chrXV 1017743 1018271 HC_gene_8719_tx_13 57 - 1017743 1018271 . 1 529 0 -chrXV 1017743 1018347 HC_gene_8719_tx_14 17 - 1017743 1018347 . 1 605 0 -chrXV 1017743 1018613 HC_gene_8719_tx_5 17 - 1017743 1018613 . 1 871 0 -chrXV 1017743 1018613 HC_gene_8719_tx_6 1 - 1017743 1018613 . 2 177,331 0,540 -chrXV 1017743 1018753 HC_gene_8719_tx_7 1 - 1017743 1018753 . 2 451,425 0,586 -chrXV 1017743 1018790 HC_gene_8719_tx_8 190 - 1017743 1018790 . 1 1048 0 -chrXV 1017743 1018790 HC_gene_8719_tx_9 1 - 1017743 1018790 . 2 747,236 0,812 -chrXV 1017743 1018790 HC_gene_8719_tx_10 1 - 1017743 1018790 . 2 536,272 0,776 -chrXV 1019021 1019795 HC_gene_8278_tx_1 3 + 1019021 1019795 . 1 775 0 -chrXV 1019021 1020008 HC_gene_8278_tx_2 1 + 1019021 1020008 . 1 988 0 -chrXV 1019284 1019795 MC_gene_8720_tx_1 1 - 1019284 1019795 . 1 512 0 -chrXV 1019879 1023236 HC_gene_8721_tx_1 3 - 1019879 1023236 . 1 3358 0 -chrXV 1023392 1023658 MC_gene_8722_tx_1 1 - 1023392 1023658 . 1 267 0 -chrXV 1023698 1024544 HC_gene_8279_tx_1 2 + 1023698 1024544 . 1 847 0 -chrXV 1025094 1025797 LC_gene_8280_tx_1 1 + 1025094 1025797 . 1 704 0 -chrXV 1025981 1026701 HC_gene_8281_tx_1 105 + 1025981 1026701 . 1 721 0 -chrXV 1025981 1026701 HC_gene_8281_tx_2 1 + 1025981 1026701 . 2 338,230 0,491 -chrXV 1025981 1026759 HC_gene_8281_tx_3 1 + 1025981 1026759 . 1 779 0 -chrXV 1026187 1026701 HC_gene_8281_tx_4 10 + 1026187 1026701 . 1 515 0 -chrXV 1026642 1026972 HC_gene_8723_tx_1 1 - 1026642 1026972 . 1 331 0 -chrXV 1026811 1027156 HC_gene_8282_tx_1 1 + 1026811 1027156 . 1 346 0 -chrXV 1026811 1028160 HC_gene_8282_tx_2 18 + 1026811 1028160 . 1 1350 0 -chrXV 1027070 1028160 HC_gene_8282_tx_3 2 + 1027070 1028160 . 1 1091 0 -chrXV 1027121 1028160 HC_gene_8282_tx_4 1 + 1027121 1028160 . 1 1040 0 -chrXV 1028081 1028568 HC_gene_8724_tx_1 207 - 1028081 1028568 . 1 488 0 -chrXV 1028081 1028694 HC_gene_8724_tx_2 6031 - 1028081 1028694 . 1 614 0 -chrXV 1029003 1029628 HC_gene_8725_tx_1 28 - 1029003 1029628 . 1 626 0 -chrXV 1029003 1031335 HC_gene_8725_tx_2 49 - 1029003 1031335 . 1 2333 0 -chrXV 1029003 1031335 HC_gene_8725_tx_3 1 - 1029003 1031335 . 2 1701,419 0,1914 -chrXV 1029003 1031335 HC_gene_8725_tx_4 1 - 1029003 1031335 . 2 590,1694 0,639 -chrXV 1029003 1031335 HC_gene_8725_tx_5 1 - 1029003 1031335 . 2 311,1835 0,498 -chrXV 1029003 1031335 HC_gene_8725_tx_6 1 - 1029003 1031335 . 2 1448,679 0,1654 -chrXV 1029003 1031335 HC_gene_8725_tx_7 1 - 1029003 1031335 . 2 1796,441 0,1892 -chrXV 1029003 1031335 HC_gene_8725_tx_8 1 - 1029003 1031335 . 2 1724,419 0,1914 -chrXV 1029003 1031471 HC_gene_8725_tx_9 2 - 1029003 1031471 . 1 2469 0 -chrXV 1033863 1034554 MC_gene_8283_tx_1 1 + 1033863 1034554 . 1 692 0 -chrXV 1034427 1035545 HC_gene_8726_tx_1 5 - 1034427 1035545 . 1 1119 0 -chrXV 1034427 1036542 HC_gene_8726_tx_2 15 - 1034427 1036542 . 1 2116 0 -chrXV 1034427 1036542 HC_gene_8726_tx_3 1 - 1034427 1036542 . 2 1592,111 0,2005 -chrXV 1034606 1036542 HC_gene_8726_tx_4 1 - 1034606 1036542 . 1 1937 0 -chrXV 1036767 1037584 HC_gene_8284_tx_1 2 + 1036767 1037584 . 1 818 0 -chrXV 1036767 1037659 HC_gene_8284_tx_2 1 + 1036767 1037659 . 1 893 0 -chrXV 1037499 1039410 MC_gene_8727_tx_1 1 - 1037499 1039410 . 1 1912 0 -chrXV 1037780 1039493 MC_gene_8285_tx_1 1 + 1037780 1039493 . 1 1714 0 -chrXV 1039377 1040626 MC_gene_8728_tx_1 1 - 1039377 1040626 . 1 1250 0 -chrXV 1039791 1041468 HC_gene_8286_tx_1 57 + 1039791 1041468 . 1 1678 0 -chrXV 1039791 1041468 HC_gene_8286_tx_2 1 + 1039791 1041468 . 2 695,903 0,775 -chrXV 1039976 1041468 HC_gene_8286_tx_3 11 + 1039976 1041468 . 1 1493 0 -chrXV 1040081 1041468 HC_gene_8286_tx_4 1 + 1040081 1041468 . 1 1388 0 -chrXV 1040164 1041468 HC_gene_8286_tx_5 15 + 1040164 1041468 . 1 1305 0 -chrXV 1040716 1041468 HC_gene_8286_tx_6 13 + 1040716 1041468 . 1 753 0 -chrXV 1040901 1041468 HC_gene_8286_tx_7 19 + 1040901 1041468 . 1 568 0 -chrXV 1041469 1042718 HC_gene_8729_tx_1 1 - 1041469 1042718 . 1 1250 0 -chrXV 1041469 1043111 HC_gene_8729_tx_2 4 - 1041469 1043111 . 1 1643 0 -chrXV 1041567 1041950 HC_gene_8729_tx_12 41 - 1041567 1041950 . 1 384 0 -chrXV 1041567 1042020 HC_gene_8729_tx_13 13 - 1041567 1042020 . 1 454 0 -chrXV 1041567 1042290 HC_gene_8729_tx_14 27 - 1041567 1042290 . 1 724 0 -chrXV 1041567 1042490 HC_gene_8729_tx_3 10 - 1041567 1042490 . 1 924 0 -chrXV 1041567 1042718 HC_gene_8729_tx_4 17 - 1041567 1042718 . 1 1152 0 -chrXV 1041567 1042816 HC_gene_8729_tx_5 12 - 1041567 1042816 . 1 1250 0 -chrXV 1041567 1042949 HC_gene_8729_tx_6 18 - 1041567 1042949 . 1 1383 0 -chrXV 1041567 1043111 HC_gene_8729_tx_7 105 - 1041567 1043111 . 1 1545 0 -chrXV 1041567 1043111 HC_gene_8729_tx_8 1 - 1041567 1043111 . 2 732,763 0,782 -chrXV 1041567 1043111 HC_gene_8729_tx_9 1 - 1041567 1043111 . 2 657,783 0,762 -chrXV 1041567 1043111 HC_gene_8729_tx_10 1 - 1041567 1043111 . 2 228,1271 0,274 -chrXV 1041567 1043178 HC_gene_8729_tx_11 13 - 1041567 1043178 . 1 1612 0 -chrXV 1044720 1045270 HC_gene_8287_tx_1 2 + 1044720 1045270 . 1 551 0 -chrXV 1044720 1046116 HC_gene_8287_tx_2 4 + 1044720 1046116 . 1 1397 0 -chrXV 1045405 1046066 MC_gene_8730_tx_1 1 - 1045405 1046066 . 1 662 0 -chrXV 1046192 1048028 HC_gene_8288_tx_1 1 + 1046192 1048028 . 1 1837 0 -chrXV 1046192 1048029 HC_gene_8288_tx_2 1 + 1046192 1048029 . 1 1838 0 -chrXV 1046192 1048033 HC_gene_8288_tx_3 3 + 1046192 1048033 . 1 1842 0 -chrXV 1046192 1048037 HC_gene_8288_tx_4 1 + 1046192 1048037 . 1 1846 0 -chrXV 1046192 1048045 HC_gene_8288_tx_5 1 + 1046192 1048045 . 1 1854 0 -chrXV 1046192 1048088 HC_gene_8288_tx_6 2 + 1046192 1048088 . 1 1897 0 -chrXV 1046192 1048136 HC_gene_8288_tx_7 1 + 1046192 1048136 . 1 1945 0 -chrXV 1046192 1048137 HC_gene_8288_tx_8 1 + 1046192 1048137 . 1 1946 0 -chrXV 1046192 1048139 HC_gene_8288_tx_9 1 + 1046192 1048139 . 1 1948 0 -chrXV 1046192 1048145 HC_gene_8288_tx_10 2 + 1046192 1048145 . 1 1954 0 -chrXV 1046192 1048147 HC_gene_8288_tx_11 1 + 1046192 1048147 . 1 1956 0 -chrXV 1047898 1049770 HC_gene_8731_tx_1 1 - 1047898 1049770 . 1 1873 0 -chrXV 1048021 1050860 HC_gene_8732_tx_1 2 - 1048021 1050860 . 1 2840 0 -chrXV 1050072 1051130 HC_gene_8289_tx_1 4 + 1050072 1051130 . 1 1059 0 -chrXV 1051032 1051729 MC_gene_8733_tx_1 1 - 1051032 1051729 . 1 698 0 -chrXV 1051082 1053012 HC_gene_8290_tx_1 2 + 1051082 1053012 . 1 1931 0 -chrXV 1051248 1053012 HC_gene_8290_tx_2 1 + 1051248 1053012 . 2 1356,269 0,1496 -chrXV 1051248 1053012 HC_gene_8290_tx_3 1 + 1051248 1053012 . 2 923,752 0,1013 -chrXV 1053230 1053708 LC_gene_8291_tx_1 1 + 1053230 1053708 . 1 479 0 -chrXV 1054517 1054929 HC_gene_8734_tx_1 1 - 1054517 1054929 . 1 413 0 -chrXV 1054834 1057799 HC_gene_8292_tx_1 2 + 1054834 1057799 . 1 2966 0 -chrXV 1055233 1057799 HC_gene_8292_tx_2 3 + 1055233 1057799 . 1 2567 0 -chrXV 1057625 1058559 MC_gene_8735_tx_1 1 - 1057625 1058559 . 1 935 0 -chrXV 1058091 1058897 MC_gene_8293_tx_1 1 + 1058091 1058897 . 1 807 0 -chrXV 1059171 1059857 LC_gene_8736_tx_1 1 - 1059171 1059857 . 1 687 0 -chrXV 1059213 1059470 HC_gene_8294_tx_1 1 + 1059213 1059470 . 1 258 0 -chrXV 1059213 1059575 HC_gene_8294_tx_2 34 + 1059213 1059575 . 1 363 0 -chrXV 1059213 1060090 HC_gene_8294_tx_3 1 + 1059213 1060090 . 1 878 0 -chrXV 1059513 1060090 HC_gene_8294_tx_4 308 + 1059513 1060090 . 1 578 0 -chrXV 1059513 1060090 HC_gene_8294_tx_5 1 + 1059513 1060090 . 2 214,288 0,290 -chrXV 1059513 1060090 HC_gene_8294_tx_6 1 + 1059513 1060090 . 2 352,166 0,412 -chrXV 1059654 1060090 HC_gene_8294_tx_7 32 + 1059654 1060090 . 1 437 0 -chrXV 1059999 1061102 HC_gene_8737_tx_1 1 - 1059999 1061102 . 1 1104 0 -chrXV 1060286 1060712 HC_gene_8737_tx_2 26 - 1060286 1060712 . 1 427 0 -chrXV 1060286 1060833 HC_gene_8737_tx_3 82 - 1060286 1060833 . 1 548 0 -chrXV 1060286 1061102 HC_gene_8737_tx_4 261 - 1060286 1061102 . 1 817 0 -chrXV 1060286 1061102 HC_gene_8737_tx_5 1 - 1060286 1061102 . 2 543,99 0,718 -chrXV 1060286 1061102 HC_gene_8737_tx_6 1 - 1060286 1061102 . 2 249,480 0,337 -chrXV 1060286 1061102 HC_gene_8737_tx_7 1 - 1060286 1061102 . 2 518,189 0,628 -chrXV 1060286 1061102 HC_gene_8737_tx_8 1 - 1060286 1061102 . 2 631,123 0,694 -chrXV 1060286 1061102 HC_gene_8737_tx_9 1 - 1060286 1061102 . 2 522,55 0,762 -chrXV 1060286 1061102 HC_gene_8737_tx_10 1 - 1060286 1061102 . 2 522,99 0,718 -chrXV 1060286 1061102 HC_gene_8737_tx_11 1 - 1060286 1061102 . 2 476,231 0,586 -chrXV 1060286 1063156 HC_gene_8737_tx_12 1 - 1060286 1063156 . 1 2871 0 -chrXV 1061470 1064688 HC_gene_8295_tx_1 1 + 1061470 1064688 . 1 3219 0 -chrXV 1063938 1064401 HC_gene_8738_tx_1 2 - 1063938 1064401 . 1 464 0 -chrXV 1064152 1064688 HC_gene_8295_tx_2 3 + 1064152 1064688 . 1 537 0 -chrXV 1064608 1065483 HC_gene_8296_tx_1 2 + 1064608 1065483 . 1 876 0 -chrXV 1064608 1066260 HC_gene_8296_tx_2 1 + 1064608 1066260 . 1 1653 0 -chrXV 1064608 1066456 HC_gene_8296_tx_3 1 + 1064608 1066456 . 1 1849 0 -chrXV 1065034 1066260 HC_gene_8296_tx_4 21 + 1065034 1066260 . 1 1227 0 -chrXV 1065034 1066456 HC_gene_8296_tx_5 6 + 1065034 1066456 . 1 1423 0 -chrXV 1065369 1066456 HC_gene_8296_tx_6 1 + 1065369 1066456 . 1 1088 0 -chrXV 1065577 1066260 HC_gene_8296_tx_8 8 + 1065577 1066260 . 1 684 0 -chrXV 1065577 1066456 HC_gene_8296_tx_7 1 + 1065577 1066456 . 1 880 0 -chrXV 1065681 1066260 HC_gene_8296_tx_9 5 + 1065681 1066260 . 1 580 0 -chrXV 1065681 1066260 HC_gene_8296_tx_10 1 + 1065681 1066260 . 2 282,227 0,353 -chrXV 1065870 1066260 HC_gene_8296_tx_11 8 + 1065870 1066260 . 1 391 0 -chrXV 1065870 1066456 HC_gene_8296_tx_12 1 + 1065870 1066456 . 1 587 0 -chrXV 1066504 1066987 LC_gene_8739_tx_1 1 - 1066504 1066987 . 1 484 0 -chrXV 1066824 1068762 HC_gene_8297_tx_1 1 + 1066824 1068762 . 1 1939 0 -chrXV 1070228 1070904 HC_gene_8740_tx_1 3 - 1070228 1070904 . 1 677 0 -chrXV 1071595 1072961 LC_gene_8741_tx_1 1 - 1071595 1072961 . 1 1367 0 -chrXV 1074094 1074851 MC_gene_8742_tx_1 1 - 1074094 1074851 . 1 758 0 -chrXV 1075104 1076309 MC_gene_8298_tx_1 1 + 1075104 1076309 . 1 1206 0 -chrXV 1076148 1076499 LC_gene_8743_tx_1 1 - 1076148 1076499 . 1 352 0 -chrXV 1076681 1078066 LC_gene_8744_tx_1 1 - 1076681 1078066 . 1 1386 0 -chrXV 1076747 1077956 MC_gene_8299_tx_1 1 + 1076747 1077956 . 1 1210 0 -chrXV 1076805 1078387 MC_gene_8300_tx_1 1 + 1076805 1078387 . 1 1583 0 -chrXV 1078246 1079544 LC_gene_8745_tx_1 1 - 1078246 1079544 . 1 1299 0 -chrXV 1078276 1080132 LC_gene_8301_tx_1 1 + 1078276 1080132 . 1 1857 0 -chrXV 1084257 1086619 LC_gene_8746_tx_1 1 - 1084257 1086619 . 1 2363 0 -chrXVI 11591 12881 LC_gene_8747_tx_1 1 + 11591 12881 . 1 1291 0 -chrXVI 12973 14411 MC_gene_9146_tx_1 1 - 12973 14411 . 1 1439 0 -chrXVI 13063 13602 LC_gene_8748_tx_1 1 + 13063 13602 . 1 540 0 -chrXVI 14352 16900 LC_gene_9147_tx_1 1 - 14352 16900 . 1 2549 0 -chrXVI 14658 14945 LC_gene_8749_tx_1 1 + 14658 14945 . 1 288 0 -chrXVI 17207 19248 LC_gene_8750_tx_1 1 + 17207 19248 . 1 2042 0 -chrXVI 19514 19824 HC_gene_9148_tx_1 1 - 19514 19824 . 1 311 0 -chrXVI 20572 21932 HC_gene_9149_tx_1 1 - 20572 21932 . 1 1361 0 -chrXVI 22216 24766 HC_gene_8751_tx_1 1 + 22216 24766 . 1 2551 0 -chrXVI 22878 24766 HC_gene_8751_tx_2 14 + 22878 24766 . 1 1889 0 -chrXVI 22878 24766 HC_gene_8751_tx_3 1 + 22878 24766 . 2 1273,485 0,1404 -chrXVI 22878 24766 HC_gene_8751_tx_4 1 + 22878 24766 . 2 946,885 0,1004 -chrXVI 23735 24713 HC_gene_9150_tx_1 2 - 23735 24713 . 1 979 0 -chrXVI 25013 26169 HC_gene_8752_tx_1 301 + 25013 26169 . 1 1157 0 -chrXVI 25502 26169 HC_gene_8752_tx_2 43 + 25502 26169 . 1 668 0 -chrXVI 25653 26169 HC_gene_8752_tx_3 51 + 25653 26169 . 1 517 0 -chrXVI 26559 29262 HC_gene_9151_tx_1 2 - 26559 29262 . 1 2704 0 -chrXVI 26559 29827 HC_gene_9151_tx_2 1 - 26559 29827 . 1 3269 0 -chrXVI 28004 29262 HC_gene_9151_tx_3 1 - 28004 29262 . 1 1259 0 -chrXVI 28004 29827 HC_gene_9151_tx_4 2 - 28004 29827 . 1 1824 0 -chrXVI 28588 29266 MC_gene_8753_tx_1 1 + 28588 29266 . 1 679 0 -chrXVI 29340 29967 MC_gene_8754_tx_1 1 + 29340 29967 . 1 628 0 -chrXVI 30057 30396 HC_gene_8755_tx_1 947 + 30057 30396 . 1 340 0 -chrXVI 30071 30396 HC_gene_8755_tx_2 3 + 30071 30396 . 1 326 0 -chrXVI 30072 30396 HC_gene_8755_tx_3 3 + 30072 30396 . 1 325 0 -chrXVI 30074 30396 HC_gene_8755_tx_4 2 + 30074 30396 . 1 323 0 -chrXVI 30075 30396 HC_gene_8755_tx_5 4 + 30075 30396 . 1 322 0 -chrXVI 30076 30396 HC_gene_8755_tx_6 4 + 30076 30396 . 1 321 0 -chrXVI 30077 30396 HC_gene_8755_tx_7 6 + 30077 30396 . 1 320 0 -chrXVI 30080 30396 HC_gene_8755_tx_8 2 + 30080 30396 . 1 317 0 -chrXVI 30276 31019 MC_gene_9152_tx_1 1 - 30276 31019 . 1 744 0 -chrXVI 31226 32904 HC_gene_8756_tx_1 4 + 31226 32904 . 1 1679 0 -chrXVI 32117 32904 HC_gene_8756_tx_2 6 + 32117 32904 . 1 788 0 -chrXVI 32416 32904 HC_gene_8756_tx_3 3 + 32416 32904 . 1 489 0 -chrXVI 32557 32904 HC_gene_8756_tx_4 13 + 32557 32904 . 1 348 0 -chrXVI 33009 35089 HC_gene_8757_tx_1 14 + 33009 35089 . 1 2081 0 -chrXVI 33009 35089 HC_gene_8757_tx_2 1 + 33009 35089 . 2 764,1264 0,817 -chrXVI 34106 34439 MC_gene_9153_tx_1 1 - 34106 34439 . 1 334 0 -chrXVI 34464 34997 MC_gene_9154_tx_1 1 - 34464 34997 . 1 534 0 -chrXVI 35204 37865 HC_gene_8758_tx_1 1 + 35204 37865 . 2 2190,429 0,2233 -chrXVI 35204 37865 HC_gene_8758_tx_2 7 + 35204 37865 . 1 2662 0 -chrXVI 35475 37865 HC_gene_8758_tx_3 1 + 35475 37865 . 1 2391 0 -chrXVI 35749 36255 MC_gene_9155_tx_1 1 - 35749 36255 . 1 507 0 -chrXVI 37798 38019 MC_gene_9156_tx_1 1 - 37798 38019 . 1 222 0 -chrXVI 38153 38866 HC_gene_8759_tx_1 55 + 38153 38866 . 1 714 0 -chrXVI 39073 40152 HC_gene_8760_tx_1 97 + 39073 40152 . 1 1080 0 -chrXVI 39411 40152 HC_gene_8760_tx_2 16 + 39411 40152 . 1 742 0 -chrXVI 39506 40243 MC_gene_9157_tx_1 1 - 39506 40243 . 1 738 0 -chrXVI 40129 40800 MC_gene_9158_tx_1 1 - 40129 40800 . 1 672 0 -chrXVI 40146 42984 MC_gene_9159_tx_1 1 - 40146 42984 . 1 2839 0 -chrXVI 40932 43185 HC_gene_8761_tx_1 21 + 40932 43185 . 1 2254 0 -chrXVI 40932 43185 HC_gene_8761_tx_2 1 + 40932 43185 . 2 722,1011 0,1243 -chrXVI 40932 43185 HC_gene_8761_tx_3 1 + 40932 43185 . 2 338,1451 0,803 -chrXVI 42067 43185 HC_gene_8761_tx_4 9 + 42067 43185 . 1 1119 0 -chrXVI 42313 43185 HC_gene_8761_tx_5 7 + 42313 43185 . 1 873 0 -chrXVI 42546 43185 HC_gene_8761_tx_6 10 + 42546 43185 . 1 640 0 -chrXVI 42642 43185 HC_gene_8761_tx_7 13 + 42642 43185 . 1 544 0 -chrXVI 43059 44362 HC_gene_9160_tx_1 14 - 43059 44362 . 1 1304 0 -chrXVI 43267 44563 LC_gene_8762_tx_1 1 + 43267 44563 . 1 1297 0 -chrXVI 44288 45080 HC_gene_9161_tx_1 4 - 44288 45080 . 1 793 0 -chrXVI 44288 45659 HC_gene_9161_tx_14 2 - 44288 45659 . 1 1372 0 -chrXVI 44288 45815 HC_gene_9161_tx_15 1 - 44288 45815 . 1 1528 0 -chrXVI 44288 46520 HC_gene_9161_tx_31 11 - 44288 46520 . 1 2233 0 -chrXVI 44288 46520 HC_gene_9161_tx_32 1 - 44288 46520 . 2 1949,126 0,2107 -chrXVI 44395 45659 HC_gene_9161_tx_16 1 - 44395 45659 . 1 1265 0 -chrXVI 44395 45815 HC_gene_9161_tx_17 1 - 44395 45815 . 1 1421 0 -chrXVI 44397 45318 HC_gene_9161_tx_51 1 - 44397 45318 . 1 922 0 -chrXVI 44397 46520 HC_gene_9161_tx_33 1 - 44397 46520 . 1 2124 0 -chrXVI 44399 45080 HC_gene_9161_tx_2 1 - 44399 45080 . 1 682 0 -chrXVI 44399 45318 HC_gene_9161_tx_52 1 - 44399 45318 . 1 920 0 -chrXVI 44400 45080 HC_gene_9161_tx_3 2 - 44400 45080 . 1 681 0 -chrXVI 44400 45318 HC_gene_9161_tx_53 1 - 44400 45318 . 1 919 0 -chrXVI 44400 46520 HC_gene_9161_tx_34 1 - 44400 46520 . 1 2121 0 -chrXVI 44402 45943 HC_gene_9161_tx_18 1 - 44402 45943 . 1 1542 0 -chrXVI 44403 45080 HC_gene_9161_tx_4 1 - 44403 45080 . 1 678 0 -chrXVI 44403 46520 HC_gene_9161_tx_35 2 - 44403 46520 . 1 2118 0 -chrXVI 44405 46520 HC_gene_9161_tx_36 1 - 44405 46520 . 1 2116 0 -chrXVI 44406 45080 HC_gene_9161_tx_5 1 - 44406 45080 . 1 675 0 -chrXVI 44406 45815 HC_gene_9161_tx_19 1 - 44406 45815 . 1 1410 0 -chrXVI 44406 46520 HC_gene_9161_tx_37 2 - 44406 46520 . 1 2115 0 -chrXVI 44407 45815 HC_gene_9161_tx_20 1 - 44407 45815 . 1 1409 0 -chrXVI 44407 46520 HC_gene_9161_tx_38 1 - 44407 46520 . 1 2114 0 -chrXVI 44411 45815 HC_gene_9161_tx_21 1 - 44411 45815 . 1 1405 0 -chrXVI 44412 46520 HC_gene_9161_tx_39 1 - 44412 46520 . 1 2109 0 -chrXVI 44413 46520 HC_gene_9161_tx_40 1 - 44413 46520 . 1 2108 0 -chrXVI 44422 45080 HC_gene_9161_tx_6 1 - 44422 45080 . 1 659 0 -chrXVI 44422 45318 HC_gene_9161_tx_54 2 - 44422 45318 . 1 897 0 -chrXVI 44429 45080 HC_gene_9161_tx_7 1 - 44429 45080 . 1 652 0 -chrXVI 44429 45815 HC_gene_9161_tx_22 1 - 44429 45815 . 1 1387 0 -chrXVI 44430 45080 HC_gene_9161_tx_8 2 - 44430 45080 . 1 651 0 -chrXVI 44430 46520 HC_gene_9161_tx_41 1 - 44430 46520 . 1 2091 0 -chrXVI 44431 45815 HC_gene_9161_tx_23 1 - 44431 45815 . 1 1385 0 -chrXVI 44434 46520 HC_gene_9161_tx_42 1 - 44434 46520 . 1 2087 0 -chrXVI 44435 45080 HC_gene_9161_tx_9 1 - 44435 45080 . 1 646 0 -chrXVI 44435 45659 HC_gene_9161_tx_24 1 - 44435 45659 . 1 1225 0 -chrXVI 44439 45815 HC_gene_9161_tx_25 1 - 44439 45815 . 1 1377 0 -chrXVI 44441 45318 HC_gene_9161_tx_55 1 - 44441 45318 . 2 494,284 0,594 -chrXVI 44451 46520 HC_gene_9161_tx_43 1 - 44451 46520 . 1 2070 0 -chrXVI 44465 45318 HC_gene_9161_tx_56 1 - 44465 45318 . 1 854 0 -chrXVI 44465 46520 HC_gene_9161_tx_44 1 - 44465 46520 . 1 2056 0 -chrXVI 44471 46520 HC_gene_9161_tx_45 1 - 44471 46520 . 1 2050 0 -chrXVI 44472 45815 HC_gene_9161_tx_26 1 - 44472 45815 . 1 1344 0 -chrXVI 44477 45080 HC_gene_9161_tx_10 2 - 44477 45080 . 1 604 0 -chrXVI 44483 45080 HC_gene_9161_tx_11 1 - 44483 45080 . 1 598 0 -chrXVI 44483 46520 HC_gene_9161_tx_46 1 - 44483 46520 . 1 2038 0 -chrXVI 44484 45318 HC_gene_9161_tx_57 1 - 44484 45318 . 1 835 0 -chrXVI 44487 46520 HC_gene_9161_tx_47 1 - 44487 46520 . 1 2034 0 -chrXVI 44501 45318 HC_gene_9161_tx_58 1 - 44501 45318 . 1 818 0 -chrXVI 44504 45080 HC_gene_9161_tx_12 3 - 44504 45080 . 1 577 0 -chrXVI 44504 45318 HC_gene_9161_tx_59 1 - 44504 45318 . 1 815 0 -chrXVI 44504 45815 HC_gene_9161_tx_27 1 - 44504 45815 . 1 1312 0 -chrXVI 44504 46520 HC_gene_9161_tx_48 2 - 44504 46520 . 1 2017 0 -chrXVI 44505 45659 HC_gene_9161_tx_28 1 - 44505 45659 . 1 1155 0 -chrXVI 44506 45080 HC_gene_9161_tx_13 1 - 44506 45080 . 1 575 0 -chrXVI 44506 45943 HC_gene_9161_tx_29 2 - 44506 45943 . 1 1438 0 -chrXVI 44506 46520 HC_gene_9161_tx_49 2 - 44506 46520 . 1 2015 0 -chrXVI 44508 45943 HC_gene_9161_tx_30 1 - 44508 45943 . 2 854,527 0,909 -chrXVI 44508 46520 HC_gene_9161_tx_50 1 - 44508 46520 . 1 2013 0 -chrXVI 46641 47194 HC_gene_9162_tx_1 2 - 46641 47194 . 1 554 0 -chrXVI 46708 47263 HC_gene_8763_tx_1 3 + 46708 47263 . 1 556 0 -chrXVI 46708 49064 HC_gene_8763_tx_2 1 + 46708 49064 . 1 2357 0 -chrXVI 46756 47194 HC_gene_9162_tx_2 4 - 46756 47194 . 1 439 0 -chrXVI 47153 48844 HC_gene_8763_tx_3 23 + 47153 48844 . 1 1692 0 -chrXVI 47153 49064 HC_gene_8763_tx_4 2 + 47153 49064 . 1 1912 0 -chrXVI 47382 48844 HC_gene_8763_tx_5 89 + 47382 48844 . 1 1463 0 -chrXVI 47382 49064 HC_gene_8763_tx_6 1 + 47382 49064 . 2 884,747 0,936 -chrXVI 47382 49064 HC_gene_8763_tx_7 5 + 47382 49064 . 1 1683 0 -chrXVI 47604 48844 HC_gene_8763_tx_8 13 + 47604 48844 . 1 1241 0 -chrXVI 47604 48844 HC_gene_8763_tx_9 1 + 47604 48844 . 2 121,906 0,335 -chrXVI 47604 49064 HC_gene_8763_tx_10 1 + 47604 49064 . 1 1461 0 -chrXVI 47701 48844 HC_gene_8763_tx_11 8 + 47701 48844 . 1 1144 0 -chrXVI 48003 48844 HC_gene_8763_tx_12 16 + 48003 48844 . 1 842 0 -chrXVI 49212 51135 HC_gene_8764_tx_1 51 + 49212 51135 . 1 1924 0 -chrXVI 49212 51135 HC_gene_8764_tx_2 1 + 49212 51135 . 2 871,909 0,1015 -chrXVI 49212 51135 HC_gene_8764_tx_3 1 + 49212 51135 . 2 1061,727 0,1197 -chrXVI 49626 51135 HC_gene_8764_tx_4 4 + 49626 51135 . 1 1510 0 -chrXVI 49988 51135 HC_gene_8764_tx_5 7 + 49988 51135 . 1 1148 0 -chrXVI 50314 51135 HC_gene_8764_tx_6 11 + 50314 51135 . 1 822 0 -chrXVI 50510 51135 HC_gene_8764_tx_7 8 + 50510 51135 . 1 626 0 -chrXVI 50771 51135 HC_gene_8764_tx_8 11 + 50771 51135 . 1 365 0 -chrXVI 51036 52685 HC_gene_9163_tx_1 35 - 51036 52685 . 1 1650 0 -chrXVI 51036 52685 HC_gene_9163_tx_2 1 - 51036 52685 . 2 990,551 0,1099 -chrXVI 51196 52685 HC_gene_9163_tx_3 2 - 51196 52685 . 1 1490 0 -chrXVI 52723 53345 LC_gene_9164_tx_1 1 - 52723 53345 . 1 623 0 -chrXVI 52923 53500 HC_gene_8765_tx_1 12 + 52923 53500 . 1 578 0 -chrXVI 53395 53892 HC_gene_9165_tx_1 4 - 53395 53892 . 1 498 0 -chrXVI 53395 55342 HC_gene_9165_tx_2 4 - 53395 55342 . 1 1948 0 -chrXVI 53395 56015 HC_gene_9165_tx_3 3 - 53395 56015 . 1 2621 0 -chrXVI 55185 55903 HC_gene_9165_tx_4 2 - 55185 55903 . 1 719 0 -chrXVI 55185 56015 HC_gene_9165_tx_5 19 - 55185 56015 . 1 831 0 -chrXVI 55331 55995 HC_gene_9165_tx_6 1 - 55331 55995 . 1 665 0 -chrXVI 55594 56760 MC_gene_8766_tx_1 1 + 55594 56760 . 1 1167 0 -chrXVI 56455 57216 LC_gene_9166_tx_1 1 - 56455 57216 . 1 762 0 -chrXVI 59124 62690 MC_gene_8767_tx_1 1 + 59124 62690 . 2 2912,552 0,3015 -chrXVI 60171 63106 MC_gene_8768_tx_1 1 + 60171 63106 . 1 2936 0 -chrXVI 60770 62991 MC_gene_8768_tx_2 1 + 60770 62991 . 1 2222 0 -chrXVI 62353 63001 MC_gene_9167_tx_1 1 - 62353 63001 . 1 649 0 -chrXVI 62522 63066 MC_gene_9168_tx_1 1 - 62522 63066 . 1 545 0 -chrXVI 63198 63471 HC_gene_8769_tx_1 1 + 63198 63471 . 1 274 0 -chrXVI 63198 63591 HC_gene_8769_tx_2 3 + 63198 63591 . 1 394 0 -chrXVI 63198 64001 HC_gene_8769_tx_3 1 + 63198 64001 . 1 804 0 -chrXVI 63198 64859 HC_gene_8769_tx_4 3 + 63198 64859 . 1 1662 0 -chrXVI 63521 64859 HC_gene_8769_tx_5 1 + 63521 64859 . 1 1339 0 -chrXVI 64788 66623 HC_gene_9169_tx_1 3 - 64788 66623 . 1 1836 0 -chrXVI 64788 66790 HC_gene_9169_tx_2 41 - 64788 66790 . 1 2003 0 -chrXVI 64788 66790 HC_gene_9169_tx_3 1 - 64788 66790 . 2 412,1538 0,465 -chrXVI 64788 66790 HC_gene_9169_tx_4 1 - 64788 66790 . 2 1742,201 0,1802 -chrXVI 64788 66790 HC_gene_9169_tx_5 1 - 64788 66790 . 2 1767,134 0,1869 -chrXVI 64871 66790 HC_gene_9169_tx_6 4 - 64871 66790 . 1 1920 0 -chrXVI 66232 66918 MC_gene_8770_tx_1 1 + 66232 66918 . 1 687 0 -chrXVI 67672 69119 HC_gene_8771_tx_1 10 + 67672 69119 . 1 1448 0 -chrXVI 67672 69119 HC_gene_8771_tx_2 1 + 67672 69119 . 2 753,637 0,811 -chrXVI 69156 70454 LC_gene_9170_tx_1 1 - 69156 70454 . 1 1299 0 -chrXVI 69243 71066 HC_gene_8772_tx_1 36 + 69243 71066 . 1 1824 0 -chrXVI 69243 72147 HC_gene_8772_tx_3 1 + 69243 72147 . 1 2905 0 -chrXVI 69501 71066 HC_gene_8772_tx_2 6 + 69501 71066 . 1 1566 0 -chrXVI 70969 73062 HC_gene_9171_tx_1 5 - 70969 73062 . 1 2094 0 -chrXVI 72594 73372 MC_gene_8773_tx_1 1 + 72594 73372 . 1 779 0 -chrXVI 73259 73926 HC_gene_9172_tx_1 216 - 73259 73926 . 1 668 0 -chrXVI 73259 73926 HC_gene_9172_tx_2 1 - 73259 73926 . 2 451,114 0,554 -chrXVI 73259 73926 HC_gene_9172_tx_3 1 - 73259 73926 . 2 56,519 0,149 -chrXVI 73259 73926 HC_gene_9172_tx_4 1 - 73259 73926 . 2 398,159 0,509 -chrXVI 74036 74838 MC_gene_8774_tx_1 1 + 74036 74838 . 1 803 0 -chrXVI 74117 74441 HC_gene_9173_tx_1 10 - 74117 74441 . 1 325 0 -chrXVI 74117 74787 HC_gene_9173_tx_2 176 - 74117 74787 . 1 671 0 -chrXVI 75178 75592 HC_gene_8775_tx_1 2 + 75178 75592 . 1 415 0 -chrXVI 75237 75592 HC_gene_8775_tx_2 46 + 75237 75592 . 1 356 0 -chrXVI 75550 75742 HC_gene_9174_tx_1 26 - 75550 75742 . 1 193 0 -chrXVI 75550 75911 HC_gene_9174_tx_2 3811 - 75550 75911 . 1 362 0 -chrXVI 75550 76254 HC_gene_9174_tx_3 77 - 75550 76254 . 1 705 0 -chrXVI 75550 76254 HC_gene_9174_tx_4 994 - 75550 76254 . 2 436,31 0,674 -chrXVI 76590 77181 HC_gene_9175_tx_1 3 - 76590 77181 . 1 592 0 -chrXVI 76590 78194 HC_gene_9175_tx_2 1 - 76590 78194 . 1 1605 0 -chrXVI 76590 78638 HC_gene_9175_tx_3 1 - 76590 78638 . 1 2049 0 -chrXVI 76590 78869 HC_gene_9175_tx_4 1 - 76590 78869 . 1 2280 0 -chrXVI 76590 79393 HC_gene_9175_tx_5 3 - 76590 79393 . 1 2804 0 -chrXVI 76697 79864 MC_gene_8776_tx_1 1 + 76697 79864 . 1 3168 0 -chrXVI 76996 78118 MC_gene_8776_tx_2 1 + 76996 78118 . 1 1123 0 -chrXVI 77031 78932 MC_gene_8776_tx_3 1 + 77031 78932 . 1 1902 0 -chrXVI 77714 77916 MC_gene_8776_tx_4 1 + 77714 77916 . 1 203 0 -chrXVI 77800 79678 MC_gene_8776_tx_5 1 + 77800 79678 . 1 1879 0 -chrXVI 79531 82379 MC_gene_9176_tx_1 1 - 79531 82379 . 1 2849 0 -chrXVI 79574 81400 MC_gene_8777_tx_1 1 + 79574 81400 . 1 1827 0 -chrXVI 79761 80788 MC_gene_8777_tx_2 1 + 79761 80788 . 1 1028 0 -chrXVI 79981 80973 MC_gene_8777_tx_3 1 + 79981 80973 . 1 993 0 -chrXVI 81429 82328 MC_gene_9176_tx_2 1 - 81429 82328 . 1 900 0 -chrXVI 81481 82629 MC_gene_8778_tx_1 1 + 81481 82629 . 1 1149 0 -chrXVI 82517 83586 HC_gene_9177_tx_1 6 - 82517 83586 . 1 1070 0 -chrXVI 82517 83890 HC_gene_9177_tx_2 4 - 82517 83890 . 1 1374 0 -chrXVI 82517 84248 HC_gene_9177_tx_3 18 - 82517 84248 . 1 1732 0 -chrXVI 82517 84248 HC_gene_9177_tx_4 1 - 82517 84248 . 3 324,856,391 0,433,1341 -chrXVI 84272 85327 HC_gene_9178_tx_1 1 - 84272 85327 . 1 1056 0 -chrXVI 84272 85338 HC_gene_9178_tx_2 2 - 84272 85338 . 1 1067 0 -chrXVI 84404 85338 HC_gene_9178_tx_3 276 - 84404 85338 . 1 935 0 -chrXVI 84404 85338 HC_gene_9178_tx_4 1 - 84404 85338 . 2 272,149 0,786 -chrXVI 84404 85338 HC_gene_9178_tx_5 1 - 84404 85338 . 2 52,812 0,123 -chrXVI 84475 87012 HC_gene_8779_tx_1 2 + 84475 87012 . 1 2538 0 -chrXVI 85555 87012 HC_gene_8779_tx_2 51 + 85555 87012 . 1 1458 0 -chrXVI 85555 87012 HC_gene_8779_tx_3 1 + 85555 87012 . 2 860,539 0,919 -chrXVI 86895 87510 HC_gene_9179_tx_1 16 - 86895 87510 . 1 616 0 -chrXVI 86895 87858 HC_gene_9179_tx_2 14 - 86895 87858 . 1 964 0 -chrXVI 86895 88056 HC_gene_9179_tx_3 64 - 86895 88056 . 1 1162 0 -chrXVI 86895 88056 HC_gene_9179_tx_4 1 - 86895 88056 . 2 682,421 0,741 -chrXVI 86895 88056 HC_gene_9179_tx_5 1 - 86895 88056 . 2 535,257 0,905 -chrXVI 86895 88239 HC_gene_9179_tx_6 11 - 86895 88239 . 1 1345 0 -chrXVI 86895 88239 HC_gene_9179_tx_7 1 - 86895 88239 . 2 938,325 0,1020 -chrXVI 88426 89180 HC_gene_8780_tx_1 1 + 88426 89180 . 1 755 0 -chrXVI 88426 89550 HC_gene_8780_tx_2 1 + 88426 89550 . 1 1125 0 -chrXVI 88426 90386 HC_gene_8780_tx_3 42 + 88426 90386 . 1 1961 0 -chrXVI 88426 90386 HC_gene_8780_tx_4 1 + 88426 90386 . 2 1070,809 0,1152 -chrXVI 88426 90386 HC_gene_8780_tx_5 1 + 88426 90386 . 2 1053,809 0,1152 -chrXVI 88426 90532 HC_gene_8780_tx_6 2 + 88426 90532 . 1 2107 0 -chrXVI 88712 90386 HC_gene_8780_tx_7 8 + 88712 90386 . 1 1675 0 -chrXVI 89822 90386 HC_gene_8780_tx_8 13 + 89822 90386 . 1 565 0 -chrXVI 90292 90926 HC_gene_9180_tx_1 2 - 90292 90926 . 1 635 0 -chrXVI 90292 91435 HC_gene_9180_tx_4 1 - 90292 91435 . 1 1144 0 -chrXVI 90390 90926 HC_gene_9180_tx_2 1 - 90390 90926 . 1 537 0 -chrXVI 90390 91435 HC_gene_9180_tx_5 1 - 90390 91435 . 1 1046 0 -chrXVI 90390 95186 HC_gene_9180_tx_8 1 - 90390 95186 . 1 4797 0 -chrXVI 90469 90926 HC_gene_9180_tx_3 5 - 90469 90926 . 1 458 0 -chrXVI 90469 91435 HC_gene_9180_tx_6 10 - 90469 91435 . 1 967 0 -chrXVI 90469 95186 HC_gene_9180_tx_9 2 - 90469 95186 . 1 4718 0 -chrXVI 90469 95186 HC_gene_9180_tx_10 1 - 90469 95186 . 2 877,3786 0,932 -chrXVI 90604 90926 HC_gene_9180_tx_11 2 - 90604 90926 . 1 323 0 -chrXVI 90604 91435 HC_gene_9180_tx_7 4 - 90604 91435 . 1 832 0 -chrXVI 95300 95696 HC_gene_9181_tx_1 6 - 95300 95696 . 1 397 0 -chrXVI 95300 96267 HC_gene_9181_tx_2 10 - 95300 96267 . 1 968 0 -chrXVI 95428 96499 HC_gene_8781_tx_1 2 + 95428 96499 . 1 1072 0 -chrXVI 95558 96267 HC_gene_9181_tx_3 1 - 95558 96267 . 1 710 0 -chrXVI 95747 96316 HC_gene_8781_tx_2 1 + 95747 96316 . 1 570 0 -chrXVI 95747 96499 HC_gene_8781_tx_3 4 + 95747 96499 . 1 753 0 -chrXVI 96028 96499 HC_gene_8781_tx_4 1 + 96028 96499 . 1 472 0 -chrXVI 96373 96729 HC_gene_9182_tx_1 41 - 96373 96729 . 1 357 0 -chrXVI 96373 96939 HC_gene_9182_tx_2 32 - 96373 96939 . 1 567 0 -chrXVI 96373 97134 HC_gene_9182_tx_3 32 - 96373 97134 . 1 762 0 -chrXVI 96373 97269 HC_gene_9182_tx_4 13 - 96373 97269 . 1 897 0 -chrXVI 96373 97343 HC_gene_9182_tx_5 20 - 96373 97343 . 1 971 0 -chrXVI 96373 97343 HC_gene_9182_tx_6 1 - 96373 97343 . 2 751,130 0,841 -chrXVI 96373 97343 HC_gene_9182_tx_7 1 - 96373 97343 . 2 744,133 0,838 -chrXVI 96373 97526 HC_gene_9182_tx_8 13 - 96373 97526 . 1 1154 0 -chrXVI 96373 97688 HC_gene_9182_tx_9 14 - 96373 97688 . 1 1316 0 -chrXVI 96373 98118 HC_gene_9182_tx_10 76 - 96373 98118 . 1 1746 0 -chrXVI 96373 98118 HC_gene_9182_tx_11 1 - 96373 98118 . 2 246,927 0,819 -chrXVI 96373 98118 HC_gene_9182_tx_12 1 - 96373 98118 . 2 809,185 0,1561 -chrXVI 96373 98505 HC_gene_9182_tx_13 10 - 96373 98505 . 1 2133 0 -chrXVI 96373 98505 HC_gene_9182_tx_14 1 - 96373 98505 . 2 965,1111 0,1022 -chrXVI 96373 98582 HC_gene_9182_tx_15 2 - 96373 98582 . 1 2210 0 -chrXVI 96373 98682 HC_gene_9182_tx_16 103 - 96373 98682 . 1 2310 0 -chrXVI 96373 98682 HC_gene_9182_tx_17 1 - 96373 98682 . 2 1647,418 0,1892 -chrXVI 96373 98682 HC_gene_9182_tx_18 1 - 96373 98682 . 2 2080,125 0,2185 -chrXVI 96373 98682 HC_gene_9182_tx_19 1 - 96373 98682 . 2 965,1265 0,1045 -chrXVI 99198 100298 HC_gene_8782_tx_1 1 + 99198 100298 . 1 1101 0 -chrXVI 99405 100229 HC_gene_8782_tx_2 2 + 99405 100229 . 1 825 0 -chrXVI 99405 100233 HC_gene_8782_tx_3 3 + 99405 100233 . 1 829 0 -chrXVI 99405 100234 HC_gene_8782_tx_4 4 + 99405 100234 . 1 830 0 -chrXVI 99405 100235 HC_gene_8782_tx_5 2 + 99405 100235 . 1 831 0 -chrXVI 99405 100236 HC_gene_8782_tx_6 7 + 99405 100236 . 1 832 0 -chrXVI 99405 100237 HC_gene_8782_tx_7 1 + 99405 100237 . 1 833 0 -chrXVI 99405 100238 HC_gene_8782_tx_8 4 + 99405 100238 . 1 834 0 -chrXVI 99405 100239 HC_gene_8782_tx_9 1 + 99405 100239 . 1 835 0 -chrXVI 99405 100240 HC_gene_8782_tx_10 2 + 99405 100240 . 1 836 0 -chrXVI 99405 100241 HC_gene_8782_tx_11 18 + 99405 100241 . 1 837 0 -chrXVI 99405 100242 HC_gene_8782_tx_12 8 + 99405 100242 . 1 838 0 -chrXVI 99405 100243 HC_gene_8782_tx_13 2 + 99405 100243 . 1 839 0 -chrXVI 99405 100244 HC_gene_8782_tx_14 8 + 99405 100244 . 1 840 0 -chrXVI 99405 100245 HC_gene_8782_tx_15 4 + 99405 100245 . 1 841 0 -chrXVI 99405 100246 HC_gene_8782_tx_16 4 + 99405 100246 . 1 842 0 -chrXVI 99405 100249 HC_gene_8782_tx_17 1 + 99405 100249 . 1 845 0 -chrXVI 99405 100251 HC_gene_8782_tx_18 1 + 99405 100251 . 1 847 0 -chrXVI 99405 100254 HC_gene_8782_tx_19 3 + 99405 100254 . 1 850 0 -chrXVI 99405 100255 HC_gene_8782_tx_20 6 + 99405 100255 . 1 851 0 -chrXVI 99405 100258 HC_gene_8782_tx_21 2 + 99405 100258 . 1 854 0 -chrXVI 99405 100259 HC_gene_8782_tx_22 3 + 99405 100259 . 1 855 0 -chrXVI 99405 100262 HC_gene_8782_tx_23 1 + 99405 100262 . 1 858 0 -chrXVI 99405 100266 HC_gene_8782_tx_24 2 + 99405 100266 . 1 862 0 -chrXVI 99405 100269 HC_gene_8782_tx_25 1 + 99405 100269 . 1 865 0 -chrXVI 99405 100270 HC_gene_8782_tx_26 1 + 99405 100270 . 1 866 0 -chrXVI 99405 100272 HC_gene_8782_tx_27 1 + 99405 100272 . 1 868 0 -chrXVI 99405 100273 HC_gene_8782_tx_28 2 + 99405 100273 . 1 869 0 -chrXVI 99405 100279 HC_gene_8782_tx_29 1 + 99405 100279 . 1 875 0 -chrXVI 99405 100280 HC_gene_8782_tx_30 6 + 99405 100280 . 1 876 0 -chrXVI 99405 100283 HC_gene_8782_tx_31 2 + 99405 100283 . 1 879 0 -chrXVI 99405 100284 HC_gene_8782_tx_32 6 + 99405 100284 . 1 880 0 -chrXVI 99405 100286 HC_gene_8782_tx_33 2 + 99405 100286 . 1 882 0 -chrXVI 99405 100287 HC_gene_8782_tx_34 1 + 99405 100287 . 1 883 0 -chrXVI 99405 100288 HC_gene_8782_tx_35 7 + 99405 100288 . 1 884 0 -chrXVI 99405 100289 HC_gene_8782_tx_36 5 + 99405 100289 . 1 885 0 -chrXVI 99405 100291 HC_gene_8782_tx_37 4 + 99405 100291 . 1 887 0 -chrXVI 99405 100291 HC_gene_8782_tx_38 1 + 99405 100291 . 2 248,348 0,539 -chrXVI 99405 100292 HC_gene_8782_tx_39 9 + 99405 100292 . 1 888 0 -chrXVI 99405 100293 HC_gene_8782_tx_40 1 + 99405 100293 . 1 889 0 -chrXVI 99405 100297 HC_gene_8782_tx_41 4 + 99405 100297 . 1 893 0 -chrXVI 99405 100299 HC_gene_8782_tx_42 7 + 99405 100299 . 1 895 0 -chrXVI 99405 100300 HC_gene_8782_tx_43 2 + 99405 100300 . 1 896 0 -chrXVI 99405 100304 HC_gene_8782_tx_44 1 + 99405 100304 . 1 900 0 -chrXVI 99405 100305 HC_gene_8782_tx_45 12 + 99405 100305 . 1 901 0 -chrXVI 99405 100305 HC_gene_8782_tx_46 1 + 99405 100305 . 2 248,600 0,301 -chrXVI 99405 100306 HC_gene_8782_tx_47 2 + 99405 100306 . 1 902 0 -chrXVI 99405 100309 HC_gene_8782_tx_48 2 + 99405 100309 . 1 905 0 -chrXVI 99405 100312 HC_gene_8782_tx_49 2 + 99405 100312 . 1 908 0 -chrXVI 99553 100248 HC_gene_8782_tx_50 1 + 99553 100248 . 1 696 0 -chrXVI 99553 100288 HC_gene_8782_tx_51 2 + 99553 100288 . 1 736 0 -chrXVI 99553 100309 HC_gene_8782_tx_52 1 + 99553 100309 . 1 757 0 -chrXVI 99678 100232 HC_gene_8782_tx_53 1 + 99678 100232 . 1 555 0 -chrXVI 99678 100236 HC_gene_8782_tx_54 2 + 99678 100236 . 1 559 0 -chrXVI 99678 100237 HC_gene_8782_tx_55 2 + 99678 100237 . 1 560 0 -chrXVI 99678 100238 HC_gene_8782_tx_56 1 + 99678 100238 . 1 561 0 -chrXVI 99678 100241 HC_gene_8782_tx_57 2 + 99678 100241 . 1 564 0 -chrXVI 99678 100246 HC_gene_8782_tx_58 1 + 99678 100246 . 1 569 0 -chrXVI 99678 100255 HC_gene_8782_tx_59 2 + 99678 100255 . 1 578 0 -chrXVI 99678 100280 HC_gene_8782_tx_60 3 + 99678 100280 . 1 603 0 -chrXVI 99678 100283 HC_gene_8782_tx_61 2 + 99678 100283 . 1 606 0 -chrXVI 99678 100288 HC_gene_8782_tx_62 1 + 99678 100288 . 1 611 0 -chrXVI 99678 100291 HC_gene_8782_tx_63 1 + 99678 100291 . 1 614 0 -chrXVI 99678 100297 HC_gene_8782_tx_64 1 + 99678 100297 . 1 620 0 -chrXVI 99678 100302 HC_gene_8782_tx_65 1 + 99678 100302 . 1 625 0 -chrXVI 99678 100305 HC_gene_8782_tx_66 1 + 99678 100305 . 1 628 0 -chrXVI 99678 100306 HC_gene_8782_tx_67 1 + 99678 100306 . 1 629 0 -chrXVI 99774 100140 MC_gene_9183_tx_1 1 - 99774 100140 . 1 367 0 -chrXVI 99804 100234 HC_gene_8782_tx_68 1 + 99804 100234 . 1 431 0 -chrXVI 99804 100235 HC_gene_8782_tx_69 1 + 99804 100235 . 1 432 0 -chrXVI 99804 100236 HC_gene_8782_tx_70 1 + 99804 100236 . 1 433 0 -chrXVI 99804 100237 HC_gene_8782_tx_71 1 + 99804 100237 . 1 434 0 -chrXVI 99804 100241 HC_gene_8782_tx_72 3 + 99804 100241 . 1 438 0 -chrXVI 99804 100242 HC_gene_8782_tx_73 1 + 99804 100242 . 1 439 0 -chrXVI 99804 100244 HC_gene_8782_tx_74 2 + 99804 100244 . 1 441 0 -chrXVI 99804 100245 HC_gene_8782_tx_75 2 + 99804 100245 . 1 442 0 -chrXVI 99804 100246 HC_gene_8782_tx_76 1 + 99804 100246 . 1 443 0 -chrXVI 99804 100257 HC_gene_8782_tx_77 1 + 99804 100257 . 1 454 0 -chrXVI 99804 100258 HC_gene_8782_tx_78 1 + 99804 100258 . 1 455 0 -chrXVI 99804 100259 HC_gene_8782_tx_79 1 + 99804 100259 . 1 456 0 -chrXVI 99804 100283 HC_gene_8782_tx_80 1 + 99804 100283 . 1 480 0 -chrXVI 99804 100284 HC_gene_8782_tx_81 1 + 99804 100284 . 1 481 0 -chrXVI 99804 100289 HC_gene_8782_tx_82 2 + 99804 100289 . 1 486 0 -chrXVI 99804 100291 HC_gene_8782_tx_83 1 + 99804 100291 . 1 488 0 -chrXVI 99804 100294 HC_gene_8782_tx_84 1 + 99804 100294 . 1 491 0 -chrXVI 99804 100300 HC_gene_8782_tx_85 1 + 99804 100300 . 1 497 0 -chrXVI 99804 100307 HC_gene_8782_tx_86 1 + 99804 100307 . 1 504 0 -chrXVI 99883 100241 HC_gene_8782_tx_87 3 + 99883 100241 . 1 359 0 -chrXVI 99883 100244 HC_gene_8782_tx_88 1 + 99883 100244 . 1 362 0 -chrXVI 99883 100246 HC_gene_8782_tx_89 1 + 99883 100246 . 1 364 0 -chrXVI 99883 100247 HC_gene_8782_tx_90 1 + 99883 100247 . 1 365 0 -chrXVI 99883 100268 HC_gene_8782_tx_91 1 + 99883 100268 . 1 386 0 -chrXVI 99883 100273 HC_gene_8782_tx_92 1 + 99883 100273 . 1 391 0 -chrXVI 99883 100291 HC_gene_8782_tx_93 1 + 99883 100291 . 1 409 0 -chrXVI 99883 100292 HC_gene_8782_tx_94 1 + 99883 100292 . 1 410 0 -chrXVI 99883 100299 HC_gene_8782_tx_95 1 + 99883 100299 . 1 417 0 -chrXVI 100463 101470 HC_gene_8783_tx_1 568 + 100463 101470 . 1 1008 0 -chrXVI 100463 101470 HC_gene_8783_tx_2 1 + 100463 101470 . 2 369,565 0,443 -chrXVI 100463 101470 HC_gene_8783_tx_3 1 + 100463 101470 . 2 49,877 0,131 -chrXVI 100463 101470 HC_gene_8783_tx_4 1 + 100463 101470 . 2 52,888 0,120 -chrXVI 100463 101470 HC_gene_8783_tx_5 1 + 100463 101470 . 2 688,271 0,737 -chrXVI 100463 101470 HC_gene_8783_tx_6 1 + 100463 101470 . 2 615,327 0,681 -chrXVI 100463 101470 HC_gene_8783_tx_7 1 + 100463 101470 . 2 676,255 0,753 -chrXVI 100463 101470 HC_gene_8783_tx_8 1 + 100463 101470 . 2 481,407 0,601 -chrXVI 100463 101470 HC_gene_8783_tx_9 1 + 100463 101470 . 3 124,220,502 0,219,506 -chrXVI 100463 101470 HC_gene_8783_tx_10 1 + 100463 101470 . 2 503,418 0,590 -chrXVI 100778 101470 HC_gene_8783_tx_11 69 + 100778 101470 . 1 693 0 -chrXVI 100778 101470 HC_gene_8783_tx_12 1 + 100778 101470 . 2 361,234 0,459 -chrXVI 101039 101470 HC_gene_8783_tx_13 62 + 101039 101470 . 1 432 0 -chrXVI 101284 102751 HC_gene_9184_tx_1 1 - 101284 102751 . 1 1468 0 -chrXVI 101344 102236 HC_gene_9184_tx_4 3 - 101344 102236 . 1 893 0 -chrXVI 101344 102751 HC_gene_9184_tx_2 3 - 101344 102751 . 1 1408 0 -chrXVI 101344 102751 HC_gene_9184_tx_3 1 - 101344 102751 . 2 738,293 0,1115 -chrXVI 103135 104717 HC_gene_8784_tx_1 9 + 103135 104717 . 1 1583 0 -chrXVI 103135 104718 HC_gene_8784_tx_2 1 + 103135 104718 . 1 1584 0 -chrXVI 103135 104719 HC_gene_8784_tx_3 1 + 103135 104719 . 1 1585 0 -chrXVI 103135 104720 HC_gene_8784_tx_4 2 + 103135 104720 . 1 1586 0 -chrXVI 103135 104721 HC_gene_8784_tx_5 1 + 103135 104721 . 1 1587 0 -chrXVI 103135 104723 HC_gene_8784_tx_6 2 + 103135 104723 . 1 1589 0 -chrXVI 103135 104727 HC_gene_8784_tx_7 4 + 103135 104727 . 1 1593 0 -chrXVI 103135 104728 HC_gene_8784_tx_8 1 + 103135 104728 . 2 1502,30 0,1564 -chrXVI 103135 104730 HC_gene_8784_tx_9 5 + 103135 104730 . 1 1596 0 -chrXVI 103135 104730 HC_gene_8784_tx_10 1 + 103135 104730 . 2 1146,278 0,1318 -chrXVI 103135 104731 HC_gene_8784_tx_11 1 + 103135 104731 . 1 1597 0 -chrXVI 103135 104733 HC_gene_8784_tx_12 1 + 103135 104733 . 1 1599 0 -chrXVI 103135 104741 HC_gene_8784_tx_13 1 + 103135 104741 . 1 1607 0 -chrXVI 103135 104747 HC_gene_8784_tx_14 1 + 103135 104747 . 1 1613 0 -chrXVI 103135 104771 HC_gene_8784_tx_15 1 + 103135 104771 . 1 1637 0 -chrXVI 103135 104776 HC_gene_8784_tx_16 1 + 103135 104776 . 1 1642 0 -chrXVI 103135 104777 HC_gene_8784_tx_17 1 + 103135 104777 . 1 1643 0 -chrXVI 103135 104782 HC_gene_8784_tx_18 2 + 103135 104782 . 1 1648 0 -chrXVI 103135 104790 HC_gene_8784_tx_19 1 + 103135 104790 . 1 1656 0 -chrXVI 103135 104801 HC_gene_8784_tx_20 1 + 103135 104801 . 1 1667 0 -chrXVI 103135 104812 HC_gene_8784_tx_21 1 + 103135 104812 . 1 1678 0 -chrXVI 103135 104816 HC_gene_8784_tx_22 1 + 103135 104816 . 1 1682 0 -chrXVI 103135 104819 HC_gene_8784_tx_23 1 + 103135 104819 . 1 1685 0 -chrXVI 103135 104827 HC_gene_8784_tx_24 1 + 103135 104827 . 1 1693 0 -chrXVI 103135 104831 HC_gene_8784_tx_25 1 + 103135 104831 . 1 1697 0 -chrXVI 103135 104836 HC_gene_8784_tx_26 1 + 103135 104836 . 2 961,695 0,1007 -chrXVI 103135 104849 HC_gene_8784_tx_27 1 + 103135 104849 . 1 1715 0 -chrXVI 103135 104850 HC_gene_8784_tx_28 1 + 103135 104850 . 1 1716 0 -chrXVI 103135 104852 HC_gene_8784_tx_29 1 + 103135 104852 . 1 1718 0 -chrXVI 103135 104853 HC_gene_8784_tx_30 2 + 103135 104853 . 1 1719 0 -chrXVI 103135 104854 HC_gene_8784_tx_31 3 + 103135 104854 . 1 1720 0 -chrXVI 103135 104859 HC_gene_8784_tx_32 1 + 103135 104859 . 1 1725 0 -chrXVI 103135 104860 HC_gene_8784_tx_33 2 + 103135 104860 . 1 1726 0 -chrXVI 103135 104862 HC_gene_8784_tx_34 1 + 103135 104862 . 1 1728 0 -chrXVI 103135 104919 HC_gene_8784_tx_35 4 + 103135 104919 . 1 1785 0 -chrXVI 103491 104721 HC_gene_8784_tx_36 1 + 103491 104721 . 1 1231 0 -chrXVI 103491 104727 HC_gene_8784_tx_37 2 + 103491 104727 . 1 1237 0 -chrXVI 103491 104730 HC_gene_8784_tx_38 1 + 103491 104730 . 1 1240 0 -chrXVI 103491 104738 HC_gene_8784_tx_39 1 + 103491 104738 . 1 1248 0 -chrXVI 103491 104746 HC_gene_8784_tx_40 1 + 103491 104746 . 1 1256 0 -chrXVI 103491 104747 HC_gene_8784_tx_41 1 + 103491 104747 . 1 1257 0 -chrXVI 103491 104830 HC_gene_8784_tx_42 1 + 103491 104830 . 1 1340 0 -chrXVI 103491 104853 HC_gene_8784_tx_43 1 + 103491 104853 . 1 1363 0 -chrXVI 103625 104718 HC_gene_8784_tx_44 1 + 103625 104718 . 1 1094 0 -chrXVI 103625 104727 HC_gene_8784_tx_45 1 + 103625 104727 . 1 1103 0 -chrXVI 103625 104739 HC_gene_8784_tx_46 1 + 103625 104739 . 1 1115 0 -chrXVI 103625 104752 HC_gene_8784_tx_47 1 + 103625 104752 . 1 1128 0 -chrXVI 103625 104787 HC_gene_8784_tx_48 1 + 103625 104787 . 1 1163 0 -chrXVI 103625 104809 HC_gene_8784_tx_49 1 + 103625 104809 . 1 1185 0 -chrXVI 103625 104854 HC_gene_8784_tx_50 1 + 103625 104854 . 1 1230 0 -chrXVI 103625 104919 HC_gene_8784_tx_51 1 + 103625 104919 . 1 1295 0 -chrXVI 103862 104717 HC_gene_8784_tx_52 1 + 103862 104717 . 1 856 0 -chrXVI 103862 104730 HC_gene_8784_tx_53 1 + 103862 104730 . 1 869 0 -chrXVI 103862 104733 HC_gene_8784_tx_54 1 + 103862 104733 . 1 872 0 -chrXVI 103862 104751 HC_gene_8784_tx_55 1 + 103862 104751 . 1 890 0 -chrXVI 103862 104801 HC_gene_8784_tx_56 1 + 103862 104801 . 1 940 0 -chrXVI 103862 104819 HC_gene_8784_tx_57 1 + 103862 104819 . 1 958 0 -chrXVI 103862 104824 HC_gene_8784_tx_58 1 + 103862 104824 . 1 963 0 -chrXVI 103862 104825 HC_gene_8784_tx_59 1 + 103862 104825 . 1 964 0 -chrXVI 103862 104830 HC_gene_8784_tx_60 1 + 103862 104830 . 1 969 0 -chrXVI 103862 104851 HC_gene_8784_tx_61 1 + 103862 104851 . 1 990 0 -chrXVI 103862 104858 HC_gene_8784_tx_62 1 + 103862 104858 . 1 997 0 -chrXVI 103862 104860 HC_gene_8784_tx_63 1 + 103862 104860 . 1 999 0 -chrXVI 103862 104865 HC_gene_8784_tx_64 1 + 103862 104865 . 1 1004 0 -chrXVI 103862 104919 HC_gene_8784_tx_65 2 + 103862 104919 . 1 1058 0 -chrXVI 104019 104727 HC_gene_8784_tx_66 1 + 104019 104727 . 1 709 0 -chrXVI 104019 104730 HC_gene_8784_tx_67 2 + 104019 104730 . 1 712 0 -chrXVI 104019 104752 HC_gene_8784_tx_68 1 + 104019 104752 . 1 734 0 -chrXVI 104019 104825 HC_gene_8784_tx_69 1 + 104019 104825 . 1 807 0 -chrXVI 104019 104853 HC_gene_8784_tx_70 1 + 104019 104853 . 1 835 0 -chrXVI 104019 104861 HC_gene_8784_tx_71 1 + 104019 104861 . 1 843 0 -chrXVI 104019 104866 HC_gene_8784_tx_72 1 + 104019 104866 . 1 848 0 -chrXVI 104019 104919 HC_gene_8784_tx_73 3 + 104019 104919 . 1 901 0 -chrXVI 104257 104717 HC_gene_8784_tx_74 2 + 104257 104717 . 1 461 0 -chrXVI 104257 104718 HC_gene_8784_tx_75 1 + 104257 104718 . 1 462 0 -chrXVI 104257 104720 HC_gene_8784_tx_76 1 + 104257 104720 . 1 464 0 -chrXVI 104257 104727 HC_gene_8784_tx_77 2 + 104257 104727 . 1 471 0 -chrXVI 104257 104730 HC_gene_8784_tx_78 1 + 104257 104730 . 1 474 0 -chrXVI 104257 104751 HC_gene_8784_tx_79 1 + 104257 104751 . 1 495 0 -chrXVI 104257 104752 HC_gene_8784_tx_80 1 + 104257 104752 . 1 496 0 -chrXVI 104257 104784 HC_gene_8784_tx_81 1 + 104257 104784 . 1 528 0 -chrXVI 104257 104795 HC_gene_8784_tx_82 1 + 104257 104795 . 1 539 0 -chrXVI 104257 104858 HC_gene_8784_tx_83 1 + 104257 104858 . 1 602 0 -chrXVI 104257 104859 HC_gene_8784_tx_84 1 + 104257 104859 . 1 603 0 -chrXVI 104257 104862 HC_gene_8784_tx_85 1 + 104257 104862 . 1 606 0 -chrXVI 104257 104919 HC_gene_8784_tx_86 2 + 104257 104919 . 1 663 0 -chrXVI 104776 105124 HC_gene_9185_tx_1 26 - 104776 105124 . 1 349 0 -chrXVI 104776 105357 HC_gene_9185_tx_2 40 - 104776 105357 . 1 582 0 -chrXVI 104776 105496 HC_gene_9185_tx_3 602 - 104776 105496 . 1 721 0 -chrXVI 104894 105124 HC_gene_9185_tx_5 6 - 104894 105124 . 1 231 0 -chrXVI 104894 105357 HC_gene_9185_tx_6 5 - 104894 105357 . 1 464 0 -chrXVI 104894 105496 HC_gene_9185_tx_4 78 - 104894 105496 . 1 603 0 -chrXVI 104963 105560 HC_gene_8785_tx_1 4 + 104963 105560 . 1 598 0 -chrXVI 105676 105929 HC_gene_8786_tx_1 3 + 105676 105929 . 1 254 0 -chrXVI 105676 106010 HC_gene_8786_tx_2 5 + 105676 106010 . 1 335 0 -chrXVI 105686 105910 MC_gene_9186_tx_1 1 - 105686 105910 . 1 225 0 -chrXVI 106141 106882 HC_gene_8787_tx_1 10 + 106141 106882 . 1 742 0 -chrXVI 106297 106882 HC_gene_8787_tx_2 1 + 106297 106882 . 1 586 0 -chrXVI 106317 106715 LC_gene_9187_tx_1 1 - 106317 106715 . 1 399 0 -chrXVI 107111 108230 HC_gene_8788_tx_1 90 + 107111 108230 . 1 1120 0 -chrXVI 107111 108230 HC_gene_8788_tx_2 1 + 107111 108230 . 2 100,932 0,188 -chrXVI 107111 108230 HC_gene_8788_tx_3 1 + 107111 108230 . 2 430,537 0,583 -chrXVI 107111 108230 HC_gene_8788_tx_4 1 + 107111 108230 . 2 275,443 0,677 -chrXVI 107111 108344 HC_gene_8788_tx_5 1 + 107111 108344 . 2 65,877 0,357 -chrXVI 107137 108230 HC_gene_8788_tx_6 1 + 107137 108230 . 2 483,489 0,605 -chrXVI 107581 108253 MC_gene_9188_tx_1 1 - 107581 108253 . 1 673 0 -chrXVI 107619 108230 HC_gene_8788_tx_7 34 + 107619 108230 . 1 612 0 -chrXVI 107619 108344 HC_gene_8788_tx_8 1 + 107619 108344 . 1 726 0 -chrXVI 107689 108230 HC_gene_8788_tx_9 10 + 107689 108230 . 1 542 0 -chrXVI 107689 108344 HC_gene_8788_tx_10 1 + 107689 108344 . 1 656 0 -chrXVI 107779 108230 HC_gene_8788_tx_11 20 + 107779 108230 . 1 452 0 -chrXVI 108614 114400 HC_gene_8789_tx_1 1 + 108614 114400 . 2 2652,3037 0,2750 -chrXVI 108614 114400 HC_gene_8789_tx_2 25 + 108614 114400 . 1 5787 0 -chrXVI 108614 114400 HC_gene_8789_tx_3 1 + 108614 114400 . 2 2370,2769 0,3018 -chrXVI 108614 114400 HC_gene_8789_tx_4 1 + 108614 114400 . 2 1240,4473 0,1314 -chrXVI 108614 114400 HC_gene_8789_tx_5 1 + 108614 114400 . 2 1175,4510 0,1277 -chrXVI 108614 114400 HC_gene_8789_tx_6 1 + 108614 114400 . 2 2637,3037 0,2750 -chrXVI 108614 114400 HC_gene_8789_tx_7 1 + 108614 114400 . 3 1418,61,350 0,3333,5437 -chrXVI 108814 114400 HC_gene_8789_tx_8 2 + 108814 114400 . 1 5587 0 -chrXVI 108912 114400 HC_gene_8789_tx_9 4 + 108912 114400 . 1 5489 0 -chrXVI 109085 114400 HC_gene_8789_tx_10 1 + 109085 114400 . 2 4092,1144 0,4172 -chrXVI 109085 114400 HC_gene_8789_tx_11 1 + 109085 114400 . 2 4099,1162 0,4154 -chrXVI 109085 114400 HC_gene_8789_tx_12 2 + 109085 114400 . 1 5316 0 -chrXVI 109370 114400 HC_gene_8789_tx_13 2 + 109370 114400 . 1 5031 0 -chrXVI 109370 114400 HC_gene_8789_tx_14 1 + 109370 114400 . 3 1500,1201,2140 0,1608,2891 -chrXVI 109597 114400 HC_gene_8789_tx_15 1 + 109597 114400 . 2 3274,1408 0,3396 -chrXVI 109597 114400 HC_gene_8789_tx_16 5 + 109597 114400 . 1 4804 0 -chrXVI 109668 114400 HC_gene_8789_tx_17 2 + 109668 114400 . 1 4733 0 -chrXVI 109876 114400 HC_gene_8789_tx_18 3 + 109876 114400 . 1 4525 0 -chrXVI 110039 114400 HC_gene_8789_tx_19 4 + 110039 114400 . 1 4362 0 -chrXVI 110039 114400 HC_gene_8789_tx_20 1 + 110039 114400 . 2 339,3423 0,939 -chrXVI 111877 114400 HC_gene_8789_tx_21 8 + 111877 114400 . 1 2524 0 -chrXVI 111877 114400 HC_gene_8789_tx_22 1 + 111877 114400 . 2 1402,1052 0,1472 -chrXVI 112740 114400 HC_gene_8789_tx_23 34 + 112740 114400 . 1 1661 0 -chrXVI 113601 114400 HC_gene_8789_tx_24 70 + 113601 114400 . 1 800 0 -chrXVI 113601 114594 HC_gene_8789_tx_25 1 + 113601 114594 . 1 994 0 -chrXVI 113665 114400 HC_gene_8789_tx_26 53 + 113665 114400 . 1 736 0 -chrXVI 113935 114400 HC_gene_8789_tx_27 74 + 113935 114400 . 1 466 0 -chrXVI 114334 116490 MC_gene_9189_tx_1 1 - 114334 116490 . 2 1123,912 0,1245 -chrXVI 114339 115674 MC_gene_9189_tx_2 1 - 114339 115674 . 1 1336 0 -chrXVI 115174 116594 HC_gene_8790_tx_1 1 + 115174 116594 . 2 45,1296 0,125 -chrXVI 115174 116594 HC_gene_8790_tx_2 1 + 115174 116594 . 2 45,1301 0,120 -chrXVI 115174 116594 HC_gene_8790_tx_3 4 + 115174 116594 . 1 1421 0 -chrXVI 115479 116594 HC_gene_8790_tx_4 1 + 115479 116594 . 1 1116 0 -chrXVI 115632 116594 HC_gene_8790_tx_5 2 + 115632 116594 . 1 963 0 -chrXVI 115804 116594 HC_gene_8790_tx_6 18 + 115804 116594 . 1 791 0 -chrXVI 117047 117837 HC_gene_8791_tx_1 3 + 117047 117837 . 1 791 0 -chrXVI 117047 117895 HC_gene_8791_tx_2 10 + 117047 117895 . 1 849 0 -chrXVI 117047 117969 HC_gene_8791_tx_3 35 + 117047 117969 . 1 923 0 -chrXVI 117047 117969 HC_gene_8791_tx_4 1 + 117047 117969 . 2 273,594 0,329 -chrXVI 117273 117837 HC_gene_8791_tx_5 2 + 117273 117837 . 1 565 0 -chrXVI 117273 117895 HC_gene_8791_tx_6 2 + 117273 117895 . 1 623 0 -chrXVI 117273 117969 HC_gene_8791_tx_7 8 + 117273 117969 . 1 697 0 -chrXVI 117324 118027 MC_gene_9190_tx_1 1 - 117324 118027 . 1 704 0 -chrXVI 118254 120239 HC_gene_8792_tx_1 21 + 118254 120239 . 1 1986 0 -chrXVI 118254 120239 HC_gene_8792_tx_2 1 + 118254 120239 . 2 203,1263 0,723 -chrXVI 118393 120239 HC_gene_8792_tx_3 3 + 118393 120239 . 1 1847 0 -chrXVI 118489 120239 HC_gene_8792_tx_4 4 + 118489 120239 . 1 1751 0 -chrXVI 118489 120239 HC_gene_8792_tx_5 1 + 118489 120239 . 2 881,820 0,931 -chrXVI 118551 120239 HC_gene_8792_tx_6 5 + 118551 120239 . 1 1689 0 -chrXVI 118680 120239 HC_gene_8792_tx_7 3 + 118680 120239 . 1 1560 0 -chrXVI 119246 120239 HC_gene_8792_tx_8 3 + 119246 120239 . 1 994 0 -chrXVI 119586 120239 HC_gene_8792_tx_9 6 + 119586 120239 . 1 654 0 -chrXVI 119657 120239 HC_gene_8792_tx_10 4 + 119657 120239 . 1 583 0 -chrXVI 120056 121293 HC_gene_9191_tx_1 56 - 120056 121293 . 1 1238 0 -chrXVI 120056 121434 HC_gene_9191_tx_2 7 - 120056 121434 . 1 1379 0 -chrXVI 120056 121434 HC_gene_9191_tx_3 1 - 120056 121434 . 2 75,1192 0,187 -chrXVI 121467 121760 HC_gene_8793_tx_1 2 + 121467 121760 . 1 294 0 -chrXVI 121740 121760 HC_gene_8793_tx_2 1 + 121740 121760 . 1 21 0 -chrXVI 123206 125614 HC_gene_8794_tx_1 9 + 123206 125614 . 1 2409 0 -chrXVI 123206 125696 HC_gene_8794_tx_2 1 + 123206 125696 . 1 2491 0 -chrXVI 124293 125614 HC_gene_8794_tx_3 17 + 124293 125614 . 1 1322 0 -chrXVI 124293 125614 HC_gene_8794_tx_4 1 + 124293 125614 . 2 310,938 0,384 -chrXVI 124293 125696 HC_gene_8794_tx_5 1 + 124293 125696 . 1 1404 0 -chrXVI 125008 125614 HC_gene_8794_tx_6 37 + 125008 125614 . 1 607 0 -chrXVI 125008 125696 HC_gene_8794_tx_7 3 + 125008 125696 . 1 689 0 -chrXVI 125974 126576 HC_gene_8795_tx_1 639 + 125974 126576 . 1 603 0 -chrXVI 126207 126576 HC_gene_8795_tx_2 57 + 126207 126576 . 1 370 0 -chrXVI 126437 128007 HC_gene_9192_tx_1 3 - 126437 128007 . 1 1571 0 -chrXVI 126437 128289 HC_gene_9192_tx_2 33 - 126437 128289 . 1 1853 0 -chrXVI 126437 128289 HC_gene_9192_tx_3 1 - 126437 128289 . 2 843,954 0,899 -chrXVI 126437 128289 HC_gene_9192_tx_4 1 - 126437 128289 . 2 840,478 0,1375 -chrXVI 126437 128448 HC_gene_9192_tx_5 3 - 126437 128448 . 1 2012 0 -chrXVI 126503 128289 HC_gene_9192_tx_6 3 - 126503 128289 . 1 1787 0 -chrXVI 128065 128563 MC_gene_8796_tx_1 1 + 128065 128563 . 1 499 0 -chrXVI 128236 129284 MC_gene_8797_tx_1 1 + 128236 129284 . 1 1049 0 -chrXVI 128396 128843 HC_gene_9193_tx_1 1 - 128396 128843 . 1 448 0 -chrXVI 128396 128856 HC_gene_9193_tx_2 2 - 128396 128856 . 1 461 0 -chrXVI 128396 128965 HC_gene_9193_tx_3 10 - 128396 128965 . 1 570 0 -chrXVI 128396 129188 HC_gene_9193_tx_4 6 - 128396 129188 . 1 793 0 -chrXVI 128465 129666 MC_gene_8798_tx_1 1 + 128465 129666 . 1 1202 0 -chrXVI 130129 132320 HC_gene_8799_tx_1 5 + 130129 132320 . 1 2192 0 -chrXVI 131825 132207 MC_gene_9194_tx_1 1 - 131825 132207 . 1 383 0 -chrXVI 132431 132725 HC_gene_9195_tx_1 1 - 132431 132725 . 1 295 0 -chrXVI 132605 135602 HC_gene_8800_tx_1 1 + 132605 135602 . 1 2998 0 -chrXVI 132811 135602 HC_gene_8800_tx_2 16 + 132811 135602 . 1 2792 0 -chrXVI 133022 135602 HC_gene_8800_tx_3 47 + 133022 135602 . 1 2581 0 -chrXVI 133022 135602 HC_gene_8800_tx_4 1 + 133022 135602 . 2 1308,1156 0,1425 -chrXVI 133022 135602 HC_gene_8800_tx_5 1 + 133022 135602 . 2 1330,1196 0,1385 -chrXVI 133022 135602 HC_gene_8800_tx_6 1 + 133022 135602 . 2 1306,1196 0,1385 -chrXVI 133022 135602 HC_gene_8800_tx_7 1 + 133022 135602 . 2 1306,1198 0,1383 -chrXVI 133022 135602 HC_gene_8800_tx_8 1 + 133022 135602 . 2 1224,1251 0,1330 -chrXVI 133022 135602 HC_gene_8800_tx_9 1 + 133022 135602 . 2 776,747 0,1834 -chrXVI 133751 135602 HC_gene_8800_tx_10 7 + 133751 135602 . 1 1852 0 -chrXVI 134858 135602 HC_gene_8800_tx_11 17 + 134858 135602 . 1 745 0 -chrXVI 135072 135433 MC_gene_9196_tx_1 1 - 135072 135433 . 1 362 0 -chrXVI 135504 136471 LC_gene_9197_tx_1 1 - 135504 136471 . 1 968 0 -chrXVI 135777 136535 HC_gene_8801_tx_1 1940 + 135777 136535 . 1 759 0 -chrXVI 135900 136535 HC_gene_8801_tx_2 243 + 135900 136535 . 1 636 0 -chrXVI 136114 136535 HC_gene_8801_tx_3 191 + 136114 136535 . 1 422 0 -chrXVI 136682 138320 HC_gene_8802_tx_1 14 + 136682 138320 . 1 1639 0 -chrXVI 137084 138320 HC_gene_8802_tx_2 2 + 137084 138320 . 1 1237 0 -chrXVI 138636 139541 HC_gene_8803_tx_1 394 + 138636 139541 . 2 90,677 0,229 -chrXVI 138636 139541 HC_gene_8803_tx_2 20 + 138636 139541 . 2 88,677 0,229 -chrXVI 138636 139541 HC_gene_8803_tx_3 54 + 138636 139541 . 2 90,673 0,233 -chrXVI 138636 139541 HC_gene_8803_tx_4 18 + 138636 139541 . 2 88,673 0,233 -chrXVI 138636 139541 HC_gene_8803_tx_5 18 + 138636 139541 . 1 906 0 -chrXVI 138873 139541 HC_gene_8803_tx_6 181 + 138873 139541 . 1 669 0 -chrXVI 139333 139869 HC_gene_9198_tx_1 1 - 139333 139869 . 1 537 0 -chrXVI 139333 140052 HC_gene_9198_tx_2 2 - 139333 140052 . 1 720 0 -chrXVI 139333 140195 HC_gene_9198_tx_3 1 - 139333 140195 . 1 863 0 -chrXVI 139333 143206 HC_gene_9198_tx_4 1 - 139333 143206 . 1 3874 0 -chrXVI 139518 139869 HC_gene_9198_tx_8 15 - 139518 139869 . 1 352 0 -chrXVI 139518 140052 HC_gene_9198_tx_9 31 - 139518 140052 . 1 535 0 -chrXVI 139518 140195 HC_gene_9198_tx_10 10 - 139518 140195 . 1 678 0 -chrXVI 139518 140732 HC_gene_9198_tx_11 5 - 139518 140732 . 1 1215 0 -chrXVI 139518 141208 HC_gene_9198_tx_12 9 - 139518 141208 . 1 1691 0 -chrXVI 139518 141273 HC_gene_9198_tx_13 4 - 139518 141273 . 1 1756 0 -chrXVI 139518 141392 HC_gene_9198_tx_14 5 - 139518 141392 . 1 1875 0 -chrXVI 139518 141460 HC_gene_9198_tx_15 2 - 139518 141460 . 1 1943 0 -chrXVI 139518 141683 HC_gene_9198_tx_16 1 - 139518 141683 . 1 2166 0 -chrXVI 139518 142082 HC_gene_9198_tx_17 8 - 139518 142082 . 1 2565 0 -chrXVI 139518 142187 HC_gene_9198_tx_18 2 - 139518 142187 . 1 2670 0 -chrXVI 139518 142316 HC_gene_9198_tx_19 2 - 139518 142316 . 1 2799 0 -chrXVI 139518 143206 HC_gene_9198_tx_5 13 - 139518 143206 . 1 3689 0 -chrXVI 139518 143206 HC_gene_9198_tx_6 1 - 139518 143206 . 2 1475,2133 0,1556 -chrXVI 139518 143206 HC_gene_9198_tx_7 1 - 139518 143206 . 2 1765,1523 0,2166 -chrXVI 143336 144110 MC_gene_9199_tx_1 1 - 143336 144110 . 1 775 0 -chrXVI 143390 143701 HC_gene_8804_tx_1 4 + 143390 143701 . 1 312 0 -chrXVI 143390 144596 HC_gene_8804_tx_2 3 + 143390 144596 . 1 1207 0 -chrXVI 145480 147172 HC_gene_9200_tx_1 1 - 145480 147172 . 1 1693 0 -chrXVI 145928 146550 MC_gene_8805_tx_1 1 + 145928 146550 . 1 623 0 -chrXVI 146706 147339 HC_gene_8806_tx_1 3 + 146706 147339 . 1 634 0 -chrXVI 147384 148604 HC_gene_8807_tx_1 77 + 147384 148604 . 1 1221 0 -chrXVI 147535 148604 HC_gene_8807_tx_2 7 + 147535 148604 . 1 1070 0 -chrXVI 148477 149928 HC_gene_9201_tx_1 5 - 148477 149928 . 1 1452 0 -chrXVI 148477 150248 HC_gene_9201_tx_2 34 - 148477 150248 . 1 1772 0 -chrXVI 149236 150367 MC_gene_8808_tx_1 1 + 149236 150367 . 2 327,696 0,436 -chrXVI 150566 151465 HC_gene_8809_tx_1 42 + 150566 151465 . 1 900 0 -chrXVI 150685 151465 HC_gene_8809_tx_2 2 + 150685 151465 . 1 781 0 -chrXVI 151339 151884 HC_gene_9202_tx_1 21 - 151339 151884 . 1 546 0 -chrXVI 151339 153154 HC_gene_9202_tx_2 49 - 151339 153154 . 1 1816 0 -chrXVI 151339 153154 HC_gene_9202_tx_3 1 - 151339 153154 . 2 722,1042 0,774 -chrXVI 151339 153154 HC_gene_9202_tx_4 1 - 151339 153154 . 2 656,1076 0,740 -chrXVI 151339 153154 HC_gene_9202_tx_5 1 - 151339 153154 . 2 843,897 0,919 -chrXVI 153453 154226 HC_gene_8810_tx_1 241 + 153453 154226 . 1 774 0 -chrXVI 153804 154226 HC_gene_8810_tx_2 14 + 153804 154226 . 1 423 0 -chrXVI 154245 154495 HC_gene_9203_tx_1 26 - 154245 154495 . 1 251 0 -chrXVI 154245 154622 HC_gene_9203_tx_2 40 - 154245 154622 . 1 378 0 -chrXVI 154245 154807 HC_gene_9203_tx_3 15 - 154245 154807 . 1 563 0 -chrXVI 154245 155030 HC_gene_9203_tx_4 13 - 154245 155030 . 1 786 0 -chrXVI 154245 155488 HC_gene_9203_tx_5 11 - 154245 155488 . 1 1244 0 -chrXVI 154245 156232 HC_gene_9203_tx_6 55 - 154245 156232 . 1 1988 0 -chrXVI 154245 156232 HC_gene_9203_tx_7 1 - 154245 156232 . 2 767,1055 0,933 -chrXVI 154245 156232 HC_gene_9203_tx_8 1 - 154245 156232 . 2 797,1146 0,842 -chrXVI 154245 156232 HC_gene_9203_tx_9 1 - 154245 156232 . 2 1282,662 0,1326 -chrXVI 156381 157634 HC_gene_9204_tx_1 2 - 156381 157634 . 1 1254 0 -chrXVI 157827 159689 HC_gene_8811_tx_1 15 + 157827 159689 . 1 1863 0 -chrXVI 157827 159689 HC_gene_8811_tx_2 1 + 157827 159689 . 2 1042,780 0,1083 -chrXVI 157827 159689 HC_gene_8811_tx_3 1 + 157827 159689 . 2 972,817 0,1046 -chrXVI 157827 159689 HC_gene_8811_tx_4 1 + 157827 159689 . 2 254,1530 0,333 -chrXVI 159576 160030 LC_gene_9205_tx_1 1 - 159576 160030 . 1 455 0 -chrXVI 159835 160701 HC_gene_8812_tx_1 3 + 159835 160701 . 1 867 0 -chrXVI 159835 162423 HC_gene_8812_tx_2 2 + 159835 162423 . 1 2589 0 -chrXVI 159835 162425 HC_gene_8812_tx_3 1 + 159835 162425 . 1 2591 0 -chrXVI 159835 162431 HC_gene_8812_tx_4 1 + 159835 162431 . 1 2597 0 -chrXVI 159835 162433 HC_gene_8812_tx_5 2 + 159835 162433 . 1 2599 0 -chrXVI 159835 162435 HC_gene_8812_tx_6 2 + 159835 162435 . 1 2601 0 -chrXVI 159835 162440 HC_gene_8812_tx_7 1 + 159835 162440 . 1 2606 0 -chrXVI 159835 162441 HC_gene_8812_tx_8 2 + 159835 162441 . 1 2607 0 -chrXVI 159835 162446 HC_gene_8812_tx_9 2 + 159835 162446 . 1 2612 0 -chrXVI 159835 162449 HC_gene_8812_tx_10 1 + 159835 162449 . 1 2615 0 -chrXVI 160220 162435 HC_gene_8812_tx_11 1 + 160220 162435 . 2 1457,515 0,1701 -chrXVI 160482 162435 HC_gene_8812_tx_12 1 + 160482 162435 . 1 1954 0 -chrXVI 160482 162453 HC_gene_8812_tx_13 1 + 160482 162453 . 1 1972 0 -chrXVI 160826 162424 HC_gene_8812_tx_14 1 + 160826 162424 . 1 1599 0 -chrXVI 160910 162435 HC_gene_8812_tx_15 2 + 160910 162435 . 1 1526 0 -chrXVI 160910 162440 HC_gene_8812_tx_16 1 + 160910 162440 . 1 1531 0 -chrXVI 160910 162454 HC_gene_8812_tx_17 1 + 160910 162454 . 1 1545 0 -chrXVI 160910 162455 HC_gene_8812_tx_18 1 + 160910 162455 . 1 1546 0 -chrXVI 161611 162430 HC_gene_8812_tx_19 1 + 161611 162430 . 1 820 0 -chrXVI 161611 162436 HC_gene_8812_tx_20 1 + 161611 162436 . 1 826 0 -chrXVI 161611 162437 HC_gene_8812_tx_21 1 + 161611 162437 . 1 827 0 -chrXVI 161611 162441 HC_gene_8812_tx_22 1 + 161611 162441 . 1 831 0 -chrXVI 161611 162451 HC_gene_8812_tx_23 1 + 161611 162451 . 1 841 0 -chrXVI 161611 162454 HC_gene_8812_tx_24 1 + 161611 162454 . 1 844 0 -chrXVI 161611 162455 HC_gene_8812_tx_25 1 + 161611 162455 . 1 845 0 -chrXVI 162338 163389 HC_gene_9206_tx_1 1 - 162338 163389 . 1 1052 0 -chrXVI 162338 163623 HC_gene_9206_tx_2 9 - 162338 163623 . 1 1286 0 -chrXVI 162338 163914 HC_gene_9206_tx_3 1 - 162338 163914 . 2 70,1414 0,163 -chrXVI 162518 163181 HC_gene_9206_tx_8 6 - 162518 163181 . 1 664 0 -chrXVI 162518 163389 HC_gene_9206_tx_4 3 - 162518 163389 . 1 872 0 -chrXVI 162518 163460 HC_gene_9206_tx_5 2 - 162518 163460 . 1 943 0 -chrXVI 162518 163623 HC_gene_9206_tx_6 67 - 162518 163623 . 1 1106 0 -chrXVI 162518 163623 HC_gene_9206_tx_7 1 - 162518 163623 . 2 257,738 0,368 -chrXVI 162606 163755 LC_gene_8813_tx_1 1 + 162606 163755 . 1 1150 0 -chrXVI 163588 163914 HC_gene_9206_tx_9 2 - 163588 163914 . 1 327 0 -chrXVI 163715 163914 HC_gene_9206_tx_10 4 - 163715 163914 . 1 200 0 -chrXVI 163892 165910 HC_gene_8814_tx_1 1 + 163892 165910 . 1 2019 0 -chrXVI 164089 165698 HC_gene_8814_tx_2 2 + 164089 165698 . 1 1610 0 -chrXVI 164089 165910 HC_gene_8814_tx_3 63 + 164089 165910 . 1 1822 0 -chrXVI 164089 165910 HC_gene_8814_tx_4 1 + 164089 165910 . 2 322,390 0,1432 -chrXVI 164089 165910 HC_gene_8814_tx_5 1 + 164089 165910 . 2 1084,630 0,1192 -chrXVI 164089 165910 HC_gene_8814_tx_6 1 + 164089 165910 . 2 1352,192 0,1630 -chrXVI 164089 165910 HC_gene_8814_tx_7 1 + 164089 165910 . 2 1352,396 0,1426 -chrXVI 164089 165910 HC_gene_8814_tx_8 1 + 164089 165910 . 2 363,896 0,926 -chrXVI 164323 165910 HC_gene_8814_tx_9 12 + 164323 165910 . 1 1588 0 -chrXVI 164323 165910 HC_gene_8814_tx_10 1 + 164323 165910 . 2 920,617 0,971 -chrXVI 164685 165910 HC_gene_8814_tx_11 10 + 164685 165910 . 1 1226 0 -chrXVI 165209 165698 HC_gene_8814_tx_12 2 + 165209 165698 . 1 490 0 -chrXVI 165209 165910 HC_gene_8814_tx_13 23 + 165209 165910 . 1 702 0 -chrXVI 165209 165910 HC_gene_8814_tx_14 1 + 165209 165910 . 2 242,407 0,295 -chrXVI 165525 165878 MC_gene_9207_tx_1 1 - 165525 165878 . 1 354 0 -chrXVI 165629 165910 HC_gene_8814_tx_15 13 + 165629 165910 . 1 282 0 -chrXVI 166090 167648 HC_gene_8815_tx_1 25 + 166090 167648 . 1 1559 0 -chrXVI 166090 167648 HC_gene_8815_tx_2 1 + 166090 167648 . 2 70,1428 0,131 -chrXVI 166090 167648 HC_gene_8815_tx_3 1 + 166090 167648 . 2 529,906 0,653 -chrXVI 166090 167729 HC_gene_8815_tx_4 5 + 166090 167729 . 1 1640 0 -chrXVI 166327 167648 HC_gene_8815_tx_5 6 + 166327 167648 . 1 1322 0 -chrXVI 166658 167648 HC_gene_8815_tx_6 5 + 166658 167648 . 1 991 0 -chrXVI 166993 167648 HC_gene_8815_tx_7 4 + 166993 167648 . 1 656 0 -chrXVI 166993 167648 HC_gene_8815_tx_8 1 + 166993 167648 . 2 278,265 0,391 -chrXVI 167703 169420 HC_gene_9208_tx_1 27 - 167703 169420 . 1 1718 0 -chrXVI 167703 169420 HC_gene_9208_tx_2 1 - 167703 169420 . 2 690,944 0,774 -chrXVI 167703 169420 HC_gene_9208_tx_3 1 - 167703 169420 . 2 739,826 0,892 -chrXVI 169722 171183 HC_gene_9209_tx_1 3 - 169722 171183 . 1 1462 0 -chrXVI 169776 170353 LC_gene_8816_tx_1 1 + 169776 170353 . 1 578 0 -chrXVI 170919 171944 LC_gene_8817_tx_1 1 + 170919 171944 . 1 1026 0 -chrXVI 171775 172768 HC_gene_9210_tx_1 3 - 171775 172768 . 1 994 0 -chrXVI 171967 172310 HC_gene_9210_tx_3 22 - 171967 172310 . 1 344 0 -chrXVI 171967 172768 HC_gene_9210_tx_2 167 - 171967 172768 . 1 802 0 -chrXVI 172303 173069 MC_gene_8818_tx_1 1 + 172303 173069 . 1 767 0 -chrXVI 173118 173549 HC_gene_8819_tx_1 10 + 173118 173549 . 1 432 0 -chrXVI 173118 173765 HC_gene_8819_tx_2 9 + 173118 173765 . 1 648 0 -chrXVI 173118 174797 HC_gene_8819_tx_3 135 + 173118 174797 . 3 45,94,725 0,454,955 -chrXVI 173118 174797 HC_gene_8819_tx_4 35 + 173118 174797 . 2 548,725 0,955 -chrXVI 173118 174797 HC_gene_8819_tx_5 2 + 173118 174797 . 2 45,1226 0,454 -chrXVI 173118 174797 HC_gene_8819_tx_6 3 + 173118 174797 . 3 45,86,725 0,454,955 -chrXVI 173118 174797 HC_gene_8819_tx_7 1 + 173118 174797 . 2 540,725 0,955 -chrXVI 173118 174797 HC_gene_8819_tx_8 11 + 173118 174797 . 1 1680 0 -chrXVI 173118 174797 HC_gene_8819_tx_9 1 + 173118 174797 . 2 548,107 0,1573 -chrXVI 173118 174797 HC_gene_8819_tx_10 1 + 173118 174797 . 2 548,708 0,972 -chrXVI 173879 174797 HC_gene_8819_tx_11 7 + 173879 174797 . 1 919 0 -chrXVI 174708 176013 MC_gene_9211_tx_1 1 - 174708 176013 . 1 1306 0 -chrXVI 175002 175922 HC_gene_8820_tx_1 24 + 175002 175922 . 1 921 0 -chrXVI 175002 175990 HC_gene_8820_tx_2 11 + 175002 175990 . 1 989 0 -chrXVI 175211 175922 HC_gene_8820_tx_3 4 + 175211 175922 . 1 712 0 -chrXVI 175211 175990 HC_gene_8820_tx_4 3 + 175211 175990 . 1 780 0 -chrXVI 175428 175922 HC_gene_8820_tx_5 4 + 175428 175922 . 1 495 0 -chrXVI 175528 175922 HC_gene_8820_tx_6 6 + 175528 175922 . 1 395 0 -chrXVI 175528 175990 HC_gene_8820_tx_7 3 + 175528 175990 . 1 463 0 -chrXVI 175612 175922 HC_gene_8820_tx_8 5 + 175612 175922 . 1 311 0 -chrXVI 175612 175990 HC_gene_8820_tx_9 3 + 175612 175990 . 1 379 0 -chrXVI 175850 176127 MC_gene_9212_tx_1 1 - 175850 176127 . 1 278 0 -chrXVI 176205 177981 HC_gene_8821_tx_1 1 + 176205 177981 . 1 1777 0 -chrXVI 178099 179129 HC_gene_8822_tx_1 19 + 178099 179129 . 1 1031 0 -chrXVI 178477 179129 HC_gene_8822_tx_2 14 + 178477 179129 . 1 653 0 -chrXVI 178803 179129 HC_gene_8822_tx_3 26 + 178803 179129 . 1 327 0 -chrXVI 179223 181199 HC_gene_8823_tx_1 1 + 179223 181199 . 1 1977 0 -chrXVI 179223 181350 HC_gene_8823_tx_2 8 + 179223 181350 . 1 2128 0 -chrXVI 181360 182602 HC_gene_8824_tx_1 1 + 181360 182602 . 1 1243 0 -chrXVI 181360 182624 HC_gene_8824_tx_2 1 + 181360 182624 . 1 1265 0 -chrXVI 181360 183181 HC_gene_8824_tx_3 7 + 181360 183181 . 1 1822 0 -chrXVI 181747 182623 HC_gene_8824_tx_4 1 + 181747 182623 . 1 877 0 -chrXVI 181747 182624 HC_gene_8824_tx_5 1 + 181747 182624 . 1 878 0 -chrXVI 181747 183181 HC_gene_8824_tx_7 1 + 181747 183181 . 1 1435 0 -chrXVI 181890 182624 HC_gene_8824_tx_6 1 + 181890 182624 . 1 735 0 -chrXVI 182080 182600 HC_gene_8824_tx_8 1 + 182080 182600 . 1 521 0 -chrXVI 182080 182620 HC_gene_8824_tx_9 1 + 182080 182620 . 1 541 0 -chrXVI 182080 183181 HC_gene_8824_tx_10 2 + 182080 183181 . 1 1102 0 -chrXVI 182448 182940 HC_gene_9213_tx_1 4 - 182448 182940 . 1 493 0 -chrXVI 183010 184412 MC_gene_9214_tx_1 1 - 183010 184412 . 1 1403 0 -chrXVI 183067 184725 MC_gene_9214_tx_2 1 - 183067 184725 . 1 1659 0 -chrXVI 183113 184132 MC_gene_9214_tx_3 1 - 183113 184132 . 1 1020 0 -chrXVI 183770 184046 MC_gene_8825_tx_1 1 + 183770 184046 . 1 277 0 -chrXVI 184881 185479 HC_gene_9215_tx_1 17 - 184881 185479 . 1 599 0 -chrXVI 184881 185535 HC_gene_9215_tx_2 28 - 184881 185535 . 1 655 0 -chrXVI 184881 185762 HC_gene_9215_tx_3 18 - 184881 185762 . 1 882 0 -chrXVI 184881 185762 HC_gene_9215_tx_4 1 - 184881 185762 . 2 514,153 0,729 -chrXVI 184881 185939 HC_gene_9215_tx_5 19 - 184881 185939 . 1 1059 0 -chrXVI 184881 186206 HC_gene_9215_tx_8 9 - 184881 186206 . 1 1326 0 -chrXVI 184881 186206 HC_gene_9215_tx_9 1 - 184881 186206 . 2 1095,134 0,1192 -chrXVI 184881 186690 HC_gene_9215_tx_11 1 - 184881 186690 . 2 556,1201 0,609 -chrXVI 184881 186690 HC_gene_9215_tx_12 1 - 184881 186690 . 1 1810 0 -chrXVI 184881 186690 HC_gene_9215_tx_13 1 - 184881 186690 . 2 492,796 0,1014 -chrXVI 184881 187564 HC_gene_9215_tx_15 1 - 184881 187564 . 2 2298,281 0,2403 -chrXVI 184881 187564 HC_gene_9215_tx_16 6 - 184881 187564 . 1 2684 0 -chrXVI 184881 187564 HC_gene_9215_tx_17 1 - 184881 187564 . 2 1095,1353 0,1331 -chrXVI 184881 187842 HC_gene_9215_tx_18 1 - 184881 187842 . 1 2962 0 -chrXVI 184912 185115 MC_gene_8826_tx_1 1 + 184912 185115 . 1 204 0 -chrXVI 185026 185479 HC_gene_9215_tx_20 2 - 185026 185479 . 1 454 0 -chrXVI 185026 185535 HC_gene_9215_tx_21 4 - 185026 185535 . 1 510 0 -chrXVI 185026 185762 HC_gene_9215_tx_6 3 - 185026 185762 . 1 737 0 -chrXVI 185026 185939 HC_gene_9215_tx_7 2 - 185026 185939 . 1 914 0 -chrXVI 185026 186206 HC_gene_9215_tx_10 1 - 185026 186206 . 1 1181 0 -chrXVI 185026 186690 HC_gene_9215_tx_14 1 - 185026 186690 . 1 1665 0 -chrXVI 185026 187564 HC_gene_9215_tx_19 1 - 185026 187564 . 2 1321,205 0,2334 -chrXVI 188070 188600 HC_gene_9216_tx_1 105 - 188070 188600 . 1 531 0 -chrXVI 188109 188749 MC_gene_8827_tx_1 1 + 188109 188749 . 1 641 0 -chrXVI 188182 188600 HC_gene_9216_tx_2 10 - 188182 188600 . 1 419 0 -chrXVI 189041 191107 MC_gene_8828_tx_1 1 + 189041 191107 . 1 2067 0 -chrXVI 190951 191594 MC_gene_9217_tx_1 1 - 190951 191594 . 1 644 0 -chrXVI 191389 192914 HC_gene_8829_tx_1 47 + 191389 192914 . 1 1526 0 -chrXVI 191389 192914 HC_gene_8829_tx_2 1 + 191389 192914 . 2 55,1398 0,128 -chrXVI 191389 192914 HC_gene_8829_tx_3 1 + 191389 192914 . 2 366,1090 0,436 -chrXVI 191534 192914 HC_gene_8829_tx_4 5 + 191534 192914 . 1 1381 0 -chrXVI 193499 194245 LC_gene_9218_tx_1 1 - 193499 194245 . 1 747 0 -chrXVI 194254 194632 HC_gene_9219_tx_1 4 - 194254 194632 . 1 379 0 -chrXVI 194254 195051 HC_gene_9219_tx_2 1 - 194254 195051 . 1 798 0 -chrXVI 194359 195051 HC_gene_9219_tx_3 5 - 194359 195051 . 1 693 0 -chrXVI 194359 195229 HC_gene_9220_tx_1 6 - 194359 195229 . 1 871 0 -chrXVI 195213 195994 HC_gene_8830_tx_1 1 + 195213 195994 . 1 782 0 -chrXVI 195365 195588 HC_gene_9221_tx_1 1 - 195365 195588 . 1 224 0 -chrXVI 195397 195994 HC_gene_8830_tx_2 4 + 195397 195994 . 1 598 0 -chrXVI 195533 197783 HC_gene_9222_tx_1 1 - 195533 197783 . 2 829,1375 0,876 -chrXVI 195533 198345 HC_gene_9222_tx_2 1 - 195533 198345 . 1 2813 0 -chrXVI 195533 198461 HC_gene_9222_tx_3 2 - 195533 198461 . 1 2929 0 -chrXVI 195889 197783 HC_gene_9222_tx_4 10 - 195889 197783 . 1 1895 0 -chrXVI 195889 198345 HC_gene_9222_tx_5 6 - 195889 198345 . 1 2457 0 -chrXVI 195889 198461 HC_gene_9222_tx_6 41 - 195889 198461 . 1 2573 0 -chrXVI 198016 198928 HC_gene_8831_tx_1 1 + 198016 198928 . 1 913 0 -chrXVI 199018 199549 HC_gene_8832_tx_1 171 + 199018 199549 . 1 532 0 -chrXVI 199413 201710 HC_gene_9223_tx_1 1 - 199413 201710 . 1 2298 0 -chrXVI 199413 202548 HC_gene_9223_tx_2 17 - 199413 202548 . 1 3136 0 -chrXVI 199413 202548 HC_gene_9223_tx_3 1 - 199413 202548 . 2 1997,1042 0,2094 -chrXVI 202929 203438 HC_gene_8833_tx_1 1 + 202929 203438 . 1 510 0 -chrXVI 203173 205051 HC_gene_8834_tx_1 8 + 203173 205051 . 1 1879 0 -chrXVI 203173 205051 HC_gene_8834_tx_2 1 + 203173 205051 . 2 430,1236 0,643 -chrXVI 203299 205051 HC_gene_8834_tx_3 40 + 203299 205051 . 1 1753 0 -chrXVI 203299 205051 HC_gene_8834_tx_4 1 + 203299 205051 . 2 140,1442 0,311 -chrXVI 203611 205051 HC_gene_8834_tx_5 8 + 203611 205051 . 1 1441 0 -chrXVI 203721 205051 HC_gene_8834_tx_6 2 + 203721 205051 . 1 1331 0 -chrXVI 203787 205051 HC_gene_8834_tx_7 11 + 203787 205051 . 1 1265 0 -chrXVI 204036 204956 MC_gene_9224_tx_1 1 - 204036 204956 . 1 921 0 -chrXVI 204339 205051 HC_gene_8834_tx_8 4 + 204339 205051 . 1 713 0 -chrXVI 205201 207815 HC_gene_8835_tx_1 8 + 205201 207815 . 1 2615 0 -chrXVI 205201 207815 HC_gene_8835_tx_2 1 + 205201 207815 . 2 1416,1144 0,1471 -chrXVI 206175 207662 LC_gene_9225_tx_1 1 - 206175 207662 . 1 1488 0 -chrXVI 207987 210050 HC_gene_8836_tx_1 1 + 207987 210050 . 2 367,1449 0,615 -chrXVI 207987 210050 HC_gene_8836_tx_2 56 + 207987 210050 . 1 2064 0 -chrXVI 207987 210050 HC_gene_8836_tx_3 1 + 207987 210050 . 2 348,1635 0,429 -chrXVI 208170 210050 HC_gene_8836_tx_4 4 + 208170 210050 . 1 1881 0 -chrXVI 208367 210050 HC_gene_8836_tx_5 14 + 208367 210050 . 1 1684 0 -chrXVI 208454 210050 HC_gene_8836_tx_6 9 + 208454 210050 . 1 1597 0 -chrXVI 210046 210264 LC_gene_9226_tx_1 1 - 210046 210264 . 1 219 0 -chrXVI 210539 211070 MC_gene_9227_tx_1 1 - 210539 211070 . 1 532 0 -chrXVI 210864 211244 HC_gene_8837_tx_1 6 + 210864 211244 . 1 381 0 -chrXVI 211116 211829 LC_gene_9228_tx_1 1 - 211116 211829 . 1 714 0 -chrXVI 211298 211873 HC_gene_8838_tx_1 11 + 211298 211873 . 1 576 0 -chrXVI 212097 212933 HC_gene_8839_tx_1 207 + 212097 212933 . 1 837 0 -chrXVI 212097 212933 HC_gene_8839_tx_2 1 + 212097 212933 . 2 672,101 0,736 -chrXVI 212097 212933 HC_gene_8839_tx_3 1 + 212097 212933 . 2 104,667 0,170 -chrXVI 212097 212933 HC_gene_8839_tx_4 2 + 212097 212933 . 2 676,110 0,727 -chrXVI 212097 212933 HC_gene_8839_tx_5 1 + 212097 212933 . 2 578,95 0,742 -chrXVI 212390 212933 HC_gene_8839_tx_6 28 + 212390 212933 . 1 544 0 -chrXVI 212926 213374 HC_gene_9229_tx_1 20 - 212926 213374 . 1 449 0 -chrXVI 212926 213465 HC_gene_9229_tx_2 26 - 212926 213465 . 1 540 0 -chrXVI 212926 213537 HC_gene_9229_tx_3 20 - 212926 213537 . 1 612 0 -chrXVI 212926 213679 HC_gene_9229_tx_4 18 - 212926 213679 . 1 754 0 -chrXVI 212926 213798 HC_gene_9229_tx_5 20 - 212926 213798 . 1 873 0 -chrXVI 212926 214109 HC_gene_9229_tx_6 119 - 212926 214109 . 1 1184 0 -chrXVI 215344 215654 HC_gene_9230_tx_1 1 - 215344 215654 . 1 311 0 -chrXVI 215662 216034 HC_gene_8840_tx_1 2 + 215662 216034 . 1 373 0 -chrXVI 215711 218391 HC_gene_9231_tx_1 9 - 215711 218391 . 1 2681 0 -chrXVI 215711 218391 HC_gene_9231_tx_2 1 - 215711 218391 . 2 2196,335 0,2346 -chrXVI 215868 218391 HC_gene_9231_tx_3 10 - 215868 218391 . 1 2524 0 -chrXVI 218548 222895 HC_gene_9232_tx_1 1 - 218548 222895 . 1 4348 0 -chrXVI 218578 220201 HC_gene_8841_tx_1 2 + 218578 220201 . 2 69,1455 0,169 -chrXVI 218578 220208 HC_gene_8841_tx_2 1 + 218578 220208 . 2 69,1462 0,169 -chrXVI 218578 220298 HC_gene_8841_tx_3 1 + 218578 220298 . 1 1721 0 -chrXVI 218578 220566 HC_gene_8841_tx_4 2 + 218578 220566 . 2 69,1820 0,169 -chrXVI 218578 220566 HC_gene_8841_tx_5 2 + 218578 220566 . 1 1989 0 -chrXVI 220058 222895 HC_gene_9232_tx_2 3 - 220058 222895 . 1 2838 0 -chrXVI 223101 224202 HC_gene_8842_tx_1 50 + 223101 224202 . 1 1102 0 -chrXVI 223101 224202 HC_gene_8842_tx_2 1 + 223101 224202 . 2 938,104 0,998 -chrXVI 223101 224202 HC_gene_8842_tx_3 1 + 223101 224202 . 2 924,79 0,1023 -chrXVI 223101 224202 HC_gene_8842_tx_4 1 + 223101 224202 . 2 255,706 0,396 -chrXVI 224150 226071 LC_gene_8843_tx_1 1 + 224150 226071 . 1 1922 0 -chrXVI 224195 225589 HC_gene_9233_tx_1 2 - 224195 225589 . 1 1395 0 -chrXVI 224195 225880 HC_gene_9233_tx_2 17 - 224195 225880 . 1 1686 0 -chrXVI 226031 226370 HC_gene_9234_tx_1 9 - 226031 226370 . 1 340 0 -chrXVI 226031 226505 HC_gene_9234_tx_2 2 - 226031 226505 . 1 475 0 -chrXVI 228275 228967 HC_gene_8844_tx_1 75 + 228275 228967 . 1 693 0 -chrXVI 228275 228967 HC_gene_8844_tx_2 1 + 228275 228967 . 2 393,130 0,563 -chrXVI 228358 228967 HC_gene_8844_tx_3 4 + 228358 228967 . 1 610 0 -chrXVI 228436 228967 HC_gene_8844_tx_4 5 + 228436 228967 . 1 532 0 -chrXVI 228534 228967 HC_gene_8844_tx_5 99 + 228534 228967 . 1 434 0 -chrXVI 228534 228967 HC_gene_8844_tx_6 1 + 228534 228967 . 2 190,140 0,294 -chrXVI 228685 228967 HC_gene_8844_tx_7 5 + 228685 228967 . 1 283 0 -chrXVI 228837 229585 HC_gene_9235_tx_1 8 - 228837 229585 . 1 749 0 -chrXVI 228837 230513 HC_gene_9235_tx_2 10 - 228837 230513 . 1 1677 0 -chrXVI 228837 230875 HC_gene_9235_tx_3 22 - 228837 230875 . 1 2039 0 -chrXVI 228837 230875 HC_gene_9235_tx_4 1 - 228837 230875 . 2 688,1267 0,772 -chrXVI 228837 230875 HC_gene_9235_tx_5 1 - 228837 230875 . 2 778,1147 0,892 -chrXVI 228837 230875 HC_gene_9235_tx_6 1 - 228837 230875 . 2 1057,769 0,1270 -chrXVI 231071 232574 HC_gene_8845_tx_1 12 + 231071 232574 . 1 1504 0 -chrXVI 231071 232574 HC_gene_8845_tx_2 1 + 231071 232574 . 2 308,997 0,507 -chrXVI 231085 232574 HC_gene_8845_tx_3 1 + 231085 232574 . 2 346,997 0,493 -chrXVI 231425 232574 HC_gene_8845_tx_4 5 + 231425 232574 . 1 1150 0 -chrXVI 231494 232574 HC_gene_8845_tx_5 1 + 231494 232574 . 1 1081 0 -chrXVI 232485 233445 HC_gene_9236_tx_1 2 - 232485 233445 . 1 961 0 -chrXVI 233041 237154 HC_gene_9237_tx_1 1 - 233041 237154 . 1 4114 0 -chrXVI 235858 237154 HC_gene_9237_tx_2 1 - 235858 237154 . 1 1297 0 -chrXVI 236009 237154 HC_gene_9237_tx_3 1 - 236009 237154 . 1 1146 0 -chrXVI 236385 236925 HC_gene_9237_tx_4 1 - 236385 236925 . 1 541 0 -chrXVI 236385 237154 HC_gene_9237_tx_5 1 - 236385 237154 . 1 770 0 -chrXVI 237306 239167 HC_gene_8846_tx_1 7 + 237306 239167 . 1 1862 0 -chrXVI 237306 239167 HC_gene_8846_tx_2 1 + 237306 239167 . 2 949,781 0,1081 -chrXVI 239042 241548 HC_gene_9238_tx_1 1 - 239042 241548 . 2 1417,545 0,1962 -chrXVI 239399 239964 LC_gene_8847_tx_1 1 + 239399 239964 . 1 566 0 -chrXVI 241585 242307 HC_gene_9239_tx_1 1 - 241585 242307 . 1 723 0 -chrXVI 241585 242431 HC_gene_9239_tx_2 1 - 241585 242431 . 1 847 0 -chrXVI 241585 242733 HC_gene_9239_tx_37 1 - 241585 242733 . 1 1149 0 -chrXVI 241656 242307 HC_gene_9239_tx_3 7 - 241656 242307 . 1 652 0 -chrXVI 241656 242431 HC_gene_9239_tx_4 25 - 241656 242431 . 1 776 0 -chrXVI 241656 242431 HC_gene_9239_tx_5 1 - 241656 242431 . 2 477,223 0,553 -chrXVI 241656 242733 HC_gene_9239_tx_38 38 - 241656 242733 . 1 1078 0 -chrXVI 241656 244082 HC_gene_9239_tx_65 1 - 241656 244082 . 1 2427 0 -chrXVI 241713 242307 HC_gene_9239_tx_6 4 - 241713 242307 . 1 595 0 -chrXVI 241713 242431 HC_gene_9239_tx_7 4 - 241713 242431 . 1 719 0 -chrXVI 241713 242733 HC_gene_9239_tx_39 12 - 241713 242733 . 1 1021 0 -chrXVI 241715 242307 HC_gene_9239_tx_8 1 - 241715 242307 . 1 593 0 -chrXVI 241715 242733 HC_gene_9239_tx_40 1 - 241715 242733 . 1 1019 0 -chrXVI 241716 242733 HC_gene_9239_tx_41 1 - 241716 242733 . 1 1018 0 -chrXVI 241717 242733 HC_gene_9239_tx_42 2 - 241717 242733 . 1 1017 0 -chrXVI 241718 242307 HC_gene_9239_tx_9 1 - 241718 242307 . 1 590 0 -chrXVI 241720 242733 HC_gene_9239_tx_43 1 - 241720 242733 . 1 1014 0 -chrXVI 241721 242431 HC_gene_9239_tx_10 1 - 241721 242431 . 1 711 0 -chrXVI 241721 242733 HC_gene_9239_tx_44 1 - 241721 242733 . 1 1013 0 -chrXVI 241722 242307 HC_gene_9239_tx_11 1 - 241722 242307 . 1 586 0 -chrXVI 241722 242733 HC_gene_9239_tx_45 1 - 241722 242733 . 1 1012 0 -chrXVI 241723 242307 HC_gene_9239_tx_12 2 - 241723 242307 . 1 585 0 -chrXVI 241723 242431 HC_gene_9239_tx_13 3 - 241723 242431 . 1 709 0 -chrXVI 241723 242733 HC_gene_9239_tx_46 5 - 241723 242733 . 1 1011 0 -chrXVI 241724 242431 HC_gene_9239_tx_14 1 - 241724 242431 . 1 708 0 -chrXVI 241724 242733 HC_gene_9239_tx_47 1 - 241724 242733 . 1 1010 0 -chrXVI 241725 242431 HC_gene_9239_tx_15 1 - 241725 242431 . 1 707 0 -chrXVI 241725 242733 HC_gene_9239_tx_48 1 - 241725 242733 . 1 1009 0 -chrXVI 241726 242733 HC_gene_9239_tx_49 3 - 241726 242733 . 1 1008 0 -chrXVI 241727 242733 HC_gene_9239_tx_50 1 - 241727 242733 . 1 1007 0 -chrXVI 241728 242431 HC_gene_9239_tx_16 5 - 241728 242431 . 1 704 0 -chrXVI 241728 242733 HC_gene_9239_tx_51 3 - 241728 242733 . 1 1006 0 -chrXVI 241730 242307 HC_gene_9239_tx_17 1 - 241730 242307 . 1 578 0 -chrXVI 241731 242431 HC_gene_9239_tx_18 1 - 241731 242431 . 1 701 0 -chrXVI 241735 242733 HC_gene_9239_tx_52 1 - 241735 242733 . 1 999 0 -chrXVI 241736 242307 HC_gene_9239_tx_19 1 - 241736 242307 . 1 572 0 -chrXVI 241739 242733 HC_gene_9239_tx_53 1 - 241739 242733 . 1 995 0 -chrXVI 241741 242431 HC_gene_9239_tx_20 1 - 241741 242431 . 1 691 0 -chrXVI 241744 242307 HC_gene_9239_tx_21 1 - 241744 242307 . 1 564 0 -chrXVI 241744 242431 HC_gene_9239_tx_22 2 - 241744 242431 . 1 688 0 -chrXVI 241744 242733 HC_gene_9239_tx_54 3 - 241744 242733 . 1 990 0 -chrXVI 241746 242307 HC_gene_9239_tx_23 3 - 241746 242307 . 1 562 0 -chrXVI 241746 242431 HC_gene_9239_tx_24 2 - 241746 242431 . 1 686 0 -chrXVI 241746 242733 HC_gene_9239_tx_55 6 - 241746 242733 . 1 988 0 -chrXVI 241746 244082 HC_gene_9239_tx_66 1 - 241746 244082 . 1 2337 0 -chrXVI 241747 242307 HC_gene_9239_tx_25 1 - 241747 242307 . 1 561 0 -chrXVI 241747 242431 HC_gene_9239_tx_26 1 - 241747 242431 . 1 685 0 -chrXVI 241748 242307 HC_gene_9239_tx_27 2 - 241748 242307 . 1 560 0 -chrXVI 241748 242733 HC_gene_9239_tx_56 6 - 241748 242733 . 1 986 0 -chrXVI 241749 242431 HC_gene_9239_tx_28 1 - 241749 242431 . 1 683 0 -chrXVI 241749 242733 HC_gene_9239_tx_57 1 - 241749 242733 . 1 985 0 -chrXVI 241750 242307 HC_gene_9239_tx_29 1 - 241750 242307 . 1 558 0 -chrXVI 241750 242431 HC_gene_9239_tx_30 3 - 241750 242431 . 1 682 0 -chrXVI 241750 242733 HC_gene_9239_tx_58 4 - 241750 242733 . 1 984 0 -chrXVI 241751 242733 HC_gene_9239_tx_59 6 - 241751 242733 . 1 983 0 -chrXVI 241752 242307 HC_gene_9239_tx_31 1 - 241752 242307 . 1 556 0 -chrXVI 241753 242431 HC_gene_9239_tx_32 1 - 241753 242431 . 1 679 0 -chrXVI 241756 242733 HC_gene_9239_tx_60 3 - 241756 242733 . 1 978 0 -chrXVI 241757 242733 HC_gene_9239_tx_61 1 - 241757 242733 . 1 977 0 -chrXVI 241758 242307 HC_gene_9239_tx_33 3 - 241758 242307 . 1 550 0 -chrXVI 241758 242431 HC_gene_9239_tx_34 2 - 241758 242431 . 1 674 0 -chrXVI 241758 242733 HC_gene_9239_tx_62 5 - 241758 242733 . 1 976 0 -chrXVI 241759 242733 HC_gene_9239_tx_63 2 - 241759 242733 . 1 975 0 -chrXVI 241761 242307 HC_gene_9239_tx_35 1 - 241761 242307 . 1 547 0 -chrXVI 241761 242431 HC_gene_9239_tx_36 3 - 241761 242431 . 1 671 0 -chrXVI 241761 242733 HC_gene_9239_tx_64 4 - 241761 242733 . 1 973 0 -chrXVI 241764 242710 LC_gene_8848_tx_1 1 + 241764 242710 . 1 947 0 -chrXVI 242283 242733 HC_gene_9239_tx_67 1 - 242283 242733 . 1 451 0 -chrXVI 242493 244082 HC_gene_9239_tx_68 2 - 242493 244082 . 1 1590 0 -chrXVI 242641 244082 HC_gene_9239_tx_69 6 - 242641 244082 . 1 1442 0 -chrXVI 243156 244174 HC_gene_8849_tx_1 2 + 243156 244174 . 1 1019 0 -chrXVI 243156 244324 HC_gene_8849_tx_2 2 + 243156 244324 . 1 1169 0 -chrXVI 244223 246253 HC_gene_9240_tx_1 9 - 244223 246253 . 1 2031 0 -chrXVI 244223 246253 HC_gene_9240_tx_2 1 - 244223 246253 . 2 1086,903 0,1128 -chrXVI 246923 250434 HC_gene_8850_tx_1 40 + 246923 250434 . 1 3512 0 -chrXVI 246923 250434 HC_gene_8850_tx_2 1 + 246923 250434 . 2 1853,1521 0,1991 -chrXVI 246923 250434 HC_gene_8850_tx_3 1 + 246923 250434 . 2 2440,976 0,2536 -chrXVI 246923 250434 HC_gene_8850_tx_4 1 + 246923 250434 . 2 1362,2106 0,1406 -chrXVI 246923 250434 HC_gene_8850_tx_5 1 + 246923 250434 . 2 2521,893 0,2619 -chrXVI 246923 250434 HC_gene_8850_tx_6 1 + 246923 250434 . 2 1362,2096 0,1416 -chrXVI 246923 250434 HC_gene_8850_tx_7 1 + 246923 250434 . 2 330,3111 0,401 -chrXVI 246923 250677 HC_gene_8850_tx_8 2 + 246923 250677 . 1 3755 0 -chrXVI 246957 250434 HC_gene_8850_tx_9 1 + 246957 250434 . 2 2173,1221 0,2257 -chrXVI 246981 250434 HC_gene_8850_tx_10 1 + 246981 250434 . 2 2581,799 0,2655 -chrXVI 247198 250434 HC_gene_8850_tx_11 1 + 247198 250434 . 2 2354,833 0,2404 -chrXVI 247214 250434 HC_gene_8850_tx_12 4 + 247214 250434 . 1 3221 0 -chrXVI 247293 250434 HC_gene_8850_tx_13 4 + 247293 250434 . 1 3142 0 -chrXVI 247293 250677 HC_gene_8850_tx_14 1 + 247293 250677 . 1 3385 0 -chrXVI 247487 250434 HC_gene_8850_tx_15 11 + 247487 250434 . 1 2948 0 -chrXVI 247487 250677 HC_gene_8850_tx_16 1 + 247487 250677 . 3 167,2390,480 0,258,2711 -chrXVI 247487 250677 HC_gene_8850_tx_17 2 + 247487 250677 . 1 3191 0 -chrXVI 247619 250434 HC_gene_8850_tx_18 4 + 247619 250434 . 1 2816 0 -chrXVI 247619 250677 HC_gene_8850_tx_19 1 + 247619 250677 . 1 3059 0 -chrXVI 247804 250434 HC_gene_8850_tx_20 4 + 247804 250434 . 1 2631 0 -chrXVI 247804 250677 HC_gene_8850_tx_21 3 + 247804 250677 . 1 2874 0 -chrXVI 247939 250434 HC_gene_8850_tx_22 14 + 247939 250434 . 1 2496 0 -chrXVI 247939 250677 HC_gene_8850_tx_23 1 + 247939 250677 . 1 2739 0 -chrXVI 248262 250434 HC_gene_8850_tx_24 6 + 248262 250434 . 1 2173 0 -chrXVI 248262 250677 HC_gene_8850_tx_25 2 + 248262 250677 . 1 2416 0 -chrXVI 248754 250434 HC_gene_8850_tx_26 6 + 248754 250434 . 1 1681 0 -chrXVI 248754 250677 HC_gene_8850_tx_27 1 + 248754 250677 . 1 1924 0 -chrXVI 248934 250434 HC_gene_8850_tx_28 16 + 248934 250434 . 1 1501 0 -chrXVI 249060 250434 HC_gene_8850_tx_29 17 + 249060 250434 . 1 1375 0 -chrXVI 249060 250677 HC_gene_8850_tx_30 1 + 249060 250677 . 1 1618 0 -chrXVI 249128 250434 HC_gene_8850_tx_31 14 + 249128 250434 . 1 1307 0 -chrXVI 249128 250677 HC_gene_8850_tx_32 1 + 249128 250677 . 1 1550 0 -chrXVI 249268 250434 HC_gene_8850_tx_33 20 + 249268 250434 . 1 1167 0 -chrXVI 249268 250677 HC_gene_8850_tx_34 2 + 249268 250677 . 1 1410 0 -chrXVI 249386 250434 HC_gene_8850_tx_35 26 + 249386 250434 . 1 1049 0 -chrXVI 249386 250434 HC_gene_8850_tx_36 1 + 249386 250434 . 2 355,571 0,478 -chrXVI 249386 250677 HC_gene_8850_tx_37 1 + 249386 250677 . 1 1292 0 -chrXVI 249544 250434 HC_gene_8850_tx_38 1 + 249544 250434 . 2 53,768 0,123 -chrXVI 249544 250434 HC_gene_8850_tx_39 34 + 249544 250434 . 1 891 0 -chrXVI 249637 250434 HC_gene_8850_tx_40 24 + 249637 250434 . 1 798 0 -chrXVI 249709 250434 HC_gene_8850_tx_41 13 + 249709 250434 . 1 726 0 -chrXVI 249792 250434 HC_gene_8850_tx_42 54 + 249792 250434 . 1 643 0 -chrXVI 249792 250677 HC_gene_8850_tx_43 4 + 249792 250677 . 1 886 0 -chrXVI 250000 250434 HC_gene_8850_tx_44 65 + 250000 250434 . 1 435 0 -chrXVI 250000 250677 HC_gene_8850_tx_45 2 + 250000 250677 . 1 678 0 -chrXVI 250149 250434 HC_gene_8850_tx_46 49 + 250149 250434 . 1 286 0 -chrXVI 250149 250677 HC_gene_8850_tx_47 2 + 250149 250677 . 1 529 0 -chrXVI 250321 250677 HC_gene_8850_tx_48 5 + 250321 250677 . 1 357 0 -chrXVI 250598 251787 HC_gene_9241_tx_1 26 - 250598 251787 . 1 1190 0 -chrXVI 250598 251787 HC_gene_9241_tx_2 1 - 250598 251787 . 2 568,484 0,706 -chrXVI 250714 251787 HC_gene_9241_tx_3 12 - 250714 251787 . 1 1074 0 -chrXVI 251968 252405 HC_gene_9242_tx_1 19 - 251968 252405 . 1 438 0 -chrXVI 251968 253480 HC_gene_9242_tx_2 1 - 251968 253480 . 1 1513 0 -chrXVI 251968 253678 HC_gene_9242_tx_3 1 - 251968 253678 . 2 1158,262 0,1449 -chrXVI 251968 253678 HC_gene_9242_tx_4 1 - 251968 253678 . 1 1711 0 -chrXVI 251968 254381 HC_gene_9242_tx_5 7 - 251968 254381 . 1 2414 0 -chrXVI 251968 254381 HC_gene_9242_tx_6 1 - 251968 254381 . 2 1781,543 0,1871 -chrXVI 251968 254381 HC_gene_9242_tx_7 1 - 251968 254381 . 2 1829,212 0,2202 -chrXVI 251968 254381 HC_gene_9242_tx_8 1 - 251968 254381 . 2 1522,648 0,1766 -chrXVI 251968 254381 HC_gene_9242_tx_9 1 - 251968 254381 . 2 1818,212 0,2202 -chrXVI 252099 252675 LC_gene_8851_tx_1 1 + 252099 252675 . 1 577 0 -chrXVI 253562 254497 LC_gene_8852_tx_1 1 + 253562 254497 . 1 936 0 -chrXVI 254404 256814 HC_gene_9243_tx_1 1 - 254404 256814 . 1 2411 0 -chrXVI 254694 255583 HC_gene_8853_tx_1 1 + 254694 255583 . 1 890 0 -chrXVI 254694 255851 HC_gene_8853_tx_2 29 + 254694 255851 . 1 1158 0 -chrXVI 254694 255851 HC_gene_8853_tx_3 1 + 254694 255851 . 2 822,240 0,918 -chrXVI 254694 256165 HC_gene_8853_tx_4 28 + 254694 256165 . 1 1472 0 -chrXVI 254694 256165 HC_gene_8853_tx_5 1 + 254694 256165 . 2 976,453 0,1019 -chrXVI 254694 256165 HC_gene_8853_tx_6 1 + 254694 256165 . 3 224,272,660 0,319,812 -chrXVI 254694 256165 HC_gene_8853_tx_7 1 + 254694 256165 . 2 819,608 0,864 -chrXVI 254694 256165 HC_gene_8853_tx_8 1 + 254694 256165 . 2 1113,266 0,1206 -chrXVI 254694 256165 HC_gene_8853_tx_9 1 + 254694 256165 . 2 376,912 0,560 -chrXVI 255759 256165 HC_gene_8853_tx_10 16 + 255759 256165 . 1 407 0 -chrXVI 255759 256766 HC_gene_8853_tx_11 2 + 255759 256766 . 1 1008 0 -chrXVI 255790 256380 HC_gene_9243_tx_2 5 - 255790 256380 . 1 591 0 -chrXVI 255790 256464 HC_gene_9243_tx_3 3 - 255790 256464 . 1 675 0 -chrXVI 255790 256541 HC_gene_9243_tx_4 12 - 255790 256541 . 1 752 0 -chrXVI 255790 256818 HC_gene_9243_tx_5 1 - 255790 256818 . 2 563,190 0,839 -chrXVI 255790 256818 HC_gene_9243_tx_6 45 - 255790 256818 . 1 1029 0 -chrXVI 256064 256165 HC_gene_8853_tx_12 2 + 256064 256165 . 1 102 0 -chrXVI 256064 256898 HC_gene_8853_tx_13 1 + 256064 256898 . 1 835 0 -chrXVI 256757 257028 HC_gene_9244_tx_1 3 - 256757 257028 . 1 272 0 -chrXVI 256757 258972 HC_gene_9244_tx_2 2 - 256757 258972 . 1 2216 0 -chrXVI 256757 259304 HC_gene_9244_tx_3 1 - 256757 259304 . 1 2548 0 -chrXVI 256757 259378 HC_gene_9244_tx_4 5 - 256757 259378 . 1 2622 0 -chrXVI 256757 259403 HC_gene_9244_tx_5 1 - 256757 259403 . 1 2647 0 -chrXVI 257523 258082 LC_gene_8854_tx_1 1 + 257523 258082 . 1 560 0 -chrXVI 259578 259986 HC_gene_9245_tx_1 37 - 259578 259986 . 1 409 0 -chrXVI 259578 260069 HC_gene_9245_tx_2 37 - 259578 260069 . 1 492 0 -chrXVI 259578 260069 HC_gene_9245_tx_3 1 - 259578 260069 . 2 380,30 0,462 -chrXVI 259578 260330 HC_gene_9245_tx_4 37 - 259578 260330 . 1 753 0 -chrXVI 259578 261006 HC_gene_9245_tx_5 17 - 259578 261006 . 1 1429 0 -chrXVI 259578 261200 HC_gene_9245_tx_6 192 - 259578 261200 . 1 1623 0 -chrXVI 259578 261200 HC_gene_9245_tx_7 1 - 259578 261200 . 2 311,855 0,768 -chrXVI 259578 261200 HC_gene_9245_tx_8 1 - 259578 261200 . 2 281,702 0,921 -chrXVI 259578 261200 HC_gene_9245_tx_9 1 - 259578 261200 . 2 507,645 0,978 -chrXVI 259688 260972 LC_gene_8855_tx_1 1 + 259688 260972 . 1 1285 0 -chrXVI 261546 264374 HC_gene_9246_tx_1 2 - 261546 264374 . 1 2829 0 -chrXVI 264965 265564 HC_gene_8856_tx_1 4 + 264965 265564 . 1 600 0 -chrXVI 264965 266200 HC_gene_8856_tx_2 19 + 264965 266200 . 1 1236 0 -chrXVI 264965 266262 HC_gene_8856_tx_3 1 + 264965 266262 . 1 1298 0 -chrXVI 265602 266200 HC_gene_8856_tx_4 3 + 265602 266200 . 1 599 0 -chrXVI 266011 267568 HC_gene_9247_tx_1 1 - 266011 267568 . 1 1558 0 -chrXVI 266111 267340 HC_gene_9247_tx_2 5 - 266111 267340 . 1 1230 0 -chrXVI 266111 267568 HC_gene_9247_tx_3 23 - 266111 267568 . 1 1458 0 -chrXVI 266111 267568 HC_gene_9247_tx_4 1 - 266111 267568 . 2 344,1010 0,448 -chrXVI 266111 267791 HC_gene_9247_tx_5 1 - 266111 267791 . 1 1681 0 -chrXVI 267775 267988 HC_gene_8857_tx_1 3 + 267775 267988 . 1 214 0 -chrXVI 267775 271063 HC_gene_8857_tx_2 1 + 267775 271063 . 2 2661,372 0,2917 -chrXVI 270925 272953 HC_gene_9248_tx_1 1 - 270925 272953 . 1 2029 0 -chrXVI 271249 272230 HC_gene_8858_tx_1 47 + 271249 272230 . 1 982 0 -chrXVI 271249 272398 HC_gene_8858_tx_2 2 + 271249 272398 . 1 1150 0 -chrXVI 271513 272230 HC_gene_8858_tx_3 3 + 271513 272230 . 1 718 0 -chrXVI 271729 272230 HC_gene_8858_tx_4 4 + 271729 272230 . 1 502 0 -chrXVI 272044 272953 HC_gene_9248_tx_2 1 - 272044 272953 . 1 910 0 -chrXVI 272117 272953 HC_gene_9248_tx_3 21 - 272117 272953 . 1 837 0 -chrXVI 273694 274534 LC_gene_9249_tx_1 1 - 273694 274534 . 1 841 0 -chrXVI 274753 275982 HC_gene_8859_tx_1 2 + 274753 275982 . 1 1230 0 -chrXVI 275029 275982 HC_gene_8859_tx_2 3 + 275029 275982 . 1 954 0 -chrXVI 275577 275982 HC_gene_8859_tx_3 4 + 275577 275982 . 1 406 0 -chrXVI 275863 276945 HC_gene_9250_tx_1 1 - 275863 276945 . 1 1083 0 -chrXVI 276019 276707 HC_gene_9250_tx_2 12 - 276019 276707 . 1 689 0 -chrXVI 276019 276797 HC_gene_9250_tx_3 12 - 276019 276797 . 1 779 0 -chrXVI 276019 276860 HC_gene_9250_tx_4 8 - 276019 276860 . 1 842 0 -chrXVI 276019 276945 HC_gene_9250_tx_5 7 - 276019 276945 . 1 927 0 -chrXVI 276019 277054 HC_gene_9250_tx_6 19 - 276019 277054 . 1 1036 0 -chrXVI 276019 277199 HC_gene_9250_tx_7 1 - 276019 277199 . 2 1033,69 0,1112 -chrXVI 276019 277199 HC_gene_9250_tx_8 8 - 276019 277199 . 1 1181 0 -chrXVI 276019 277330 HC_gene_9250_tx_9 9 - 276019 277330 . 1 1312 0 -chrXVI 276019 277561 HC_gene_9250_tx_10 65 - 276019 277561 . 1 1543 0 -chrXVI 277971 278919 HC_gene_9251_tx_1 21 - 277971 278919 . 1 949 0 -chrXVI 277971 279123 HC_gene_9251_tx_2 14 - 277971 279123 . 1 1153 0 -chrXVI 277971 279351 HC_gene_9251_tx_3 12 - 277971 279351 . 1 1381 0 -chrXVI 277971 279468 HC_gene_9251_tx_4 11 - 277971 279468 . 1 1498 0 -chrXVI 277971 279468 HC_gene_9251_tx_5 1 - 277971 279468 . 2 719,716 0,782 -chrXVI 277971 279948 HC_gene_9251_tx_6 83 - 277971 279948 . 1 1978 0 -chrXVI 277971 279948 HC_gene_9251_tx_7 1 - 277971 279948 . 2 1133,352 0,1626 -chrXVI 277971 279948 HC_gene_9251_tx_8 1 - 277971 279948 . 2 1080,783 0,1195 -chrXVI 277971 279948 HC_gene_9251_tx_9 1 - 277971 279948 . 2 77,1447 0,531 -chrXVI 277971 279948 HC_gene_9251_tx_10 1 - 277971 279948 . 2 585,634 0,1344 -chrXVI 279691 279948 HC_gene_9251_tx_11 1 - 279691 279948 . 1 258 0 -chrXVI 280267 280909 HC_gene_8860_tx_1 1 + 280267 280909 . 1 643 0 -chrXVI 280361 280909 HC_gene_8860_tx_2 2 + 280361 280909 . 1 549 0 -chrXVI 280393 280651 LC_gene_9252_tx_1 1 - 280393 280651 . 1 259 0 -chrXVI 280453 280909 HC_gene_8860_tx_3 36 + 280453 280909 . 1 457 0 -chrXVI 280453 281063 HC_gene_8861_tx_1 41 + 280453 281063 . 1 611 0 -chrXVI 280953 281517 HC_gene_9253_tx_1 10 - 280953 281517 . 1 565 0 -chrXVI 281053 281308 HC_gene_9253_tx_4 3 - 281053 281308 . 1 256 0 -chrXVI 281053 281517 HC_gene_9253_tx_2 37 - 281053 281517 . 1 465 0 -chrXVI 281053 281533 HC_gene_9253_tx_3 1 - 281053 281533 . 2 318,30 0,451 -chrXVI 282090 283020 HC_gene_8862_tx_1 1299 + 282090 283020 . 2 51,355 0,576 -chrXVI 282090 283020 HC_gene_8862_tx_2 6 + 282090 283020 . 2 55,355 0,576 -chrXVI 282090 283020 HC_gene_8862_tx_3 69 + 282090 283020 . 1 931 0 -chrXVI 282090 283020 HC_gene_8862_tx_4 15 + 282090 283020 . 2 62,335 0,596 -chrXVI 282672 282970 LC_gene_9254_tx_1 1 - 282672 282970 . 1 299 0 -chrXVI 282851 283020 HC_gene_8862_tx_5 2578 + 282851 283020 . 1 170 0 -chrXVI 283229 283774 HC_gene_9255_tx_1 4 - 283229 283774 . 1 546 0 -chrXVI 283229 286073 HC_gene_9255_tx_2 1 - 283229 286073 . 2 1366,396 0,2449 -chrXVI 283229 286131 HC_gene_9255_tx_3 1 - 283229 286131 . 1 2903 0 -chrXVI 283229 286308 HC_gene_9255_tx_4 2 - 283229 286308 . 1 3080 0 -chrXVI 283256 285539 LC_gene_8863_tx_1 1 + 283256 285539 . 1 2284 0 -chrXVI 286630 287113 HC_gene_8864_tx_1 4 + 286630 287113 . 1 484 0 -chrXVI 286630 287400 HC_gene_8864_tx_2 1 + 286630 287400 . 1 771 0 -chrXVI 287328 289263 HC_gene_9256_tx_1 3 - 287328 289263 . 1 1936 0 -chrXVI 289404 289621 MC_gene_8865_tx_1 1 + 289404 289621 . 1 218 0 -chrXVI 289477 291101 HC_gene_9257_tx_1 1 - 289477 291101 . 1 1625 0 -chrXVI 289573 291101 HC_gene_9257_tx_2 49 - 289573 291101 . 1 1529 0 -chrXVI 289573 291101 HC_gene_9257_tx_3 1 - 289573 291101 . 2 991,455 0,1074 -chrXVI 289659 291360 LC_gene_8866_tx_1 1 + 289659 291360 . 1 1702 0 -chrXVI 291151 292442 HC_gene_9258_tx_1 1 - 291151 292442 . 2 1103,81 0,1211 -chrXVI 291151 292442 HC_gene_9258_tx_2 31 - 291151 292442 . 1 1292 0 -chrXVI 291151 292442 HC_gene_9258_tx_3 1 - 291151 292442 . 2 1131,86 0,1206 -chrXVI 291345 292442 HC_gene_9258_tx_4 6 - 291345 292442 . 1 1098 0 -chrXVI 292649 296027 HC_gene_9259_tx_1 1 - 292649 296027 . 1 3379 0 -chrXVI 292649 296027 HC_gene_9259_tx_2 1 - 292649 296027 . 2 92,3195 0,184 -chrXVI 292649 296403 HC_gene_9259_tx_3 1 - 292649 296403 . 1 3755 0 -chrXVI 292649 296809 HC_gene_9259_tx_4 8 - 292649 296809 . 1 4161 0 -chrXVI 292649 296809 HC_gene_9259_tx_5 1 - 292649 296809 . 2 2884,589 0,3572 -chrXVI 296615 297037 HC_gene_9259_tx_6 1 - 296615 297037 . 1 423 0 -chrXVI 296681 296809 HC_gene_9259_tx_8 1 - 296681 296809 . 1 129 0 -chrXVI 296681 297037 HC_gene_9259_tx_7 3 - 296681 297037 . 1 357 0 -chrXVI 296681 297303 HC_gene_9259_tx_9 1 - 296681 297303 . 1 623 0 -chrXVI 296994 298442 HC_gene_8867_tx_1 5 + 296994 298442 . 1 1449 0 -chrXVI 296994 298583 HC_gene_8867_tx_2 1 + 296994 298583 . 1 1590 0 -chrXVI 297488 298442 HC_gene_8867_tx_3 331 + 297488 298442 . 1 955 0 -chrXVI 297488 298442 HC_gene_8867_tx_4 1 + 297488 298442 . 2 779,115 0,840 -chrXVI 297488 298442 HC_gene_8867_tx_5 1 + 297488 298442 . 2 53,581 0,374 -chrXVI 297488 298442 HC_gene_8867_tx_6 1 + 297488 298442 . 2 278,557 0,398 -chrXVI 297488 298442 HC_gene_8867_tx_7 1 + 297488 298442 . 2 776,98 0,857 -chrXVI 297488 298583 HC_gene_8867_tx_8 35 + 297488 298583 . 1 1096 0 -chrXVI 297488 298583 HC_gene_8867_tx_9 1 + 297488 298583 . 2 979,57 0,1039 -chrXVI 297888 298442 HC_gene_8867_tx_10 47 + 297888 298442 . 1 555 0 -chrXVI 297888 298583 HC_gene_8867_tx_11 9 + 297888 298583 . 1 696 0 -chrXVI 298237 298442 HC_gene_8867_tx_12 9 + 298237 298442 . 1 206 0 -chrXVI 298237 298583 HC_gene_8867_tx_13 9 + 298237 298583 . 1 347 0 -chrXVI 298468 299524 HC_gene_9260_tx_1 44 - 298468 299524 . 1 1057 0 -chrXVI 299741 301359 HC_gene_9261_tx_1 5 - 299741 301359 . 1 1619 0 -chrXVI 299810 300339 LC_gene_8868_tx_1 1 + 299810 300339 . 1 530 0 -chrXVI 299822 301359 HC_gene_9261_tx_2 11 - 299822 301359 . 1 1538 0 -chrXVI 301589 302738 HC_gene_8869_tx_1 32 + 301589 302738 . 1 1150 0 -chrXVI 301589 302738 HC_gene_8869_tx_2 1 + 301589 302738 . 2 206,838 0,312 -chrXVI 301589 302883 HC_gene_8869_tx_3 5 + 301589 302883 . 1 1295 0 -chrXVI 301589 303058 HC_gene_8869_tx_4 8 + 301589 303058 . 1 1470 0 -chrXVI 303101 304114 HC_gene_8870_tx_1 2574 + 303101 304114 . 1 1014 0 -chrXVI 303101 304319 HC_gene_8870_tx_2 10 + 303101 304319 . 1 1219 0 -chrXVI 303195 304114 HC_gene_8870_tx_3 159 + 303195 304114 . 1 920 0 -chrXVI 303628 304114 HC_gene_8870_tx_4 1477 + 303628 304114 . 1 487 0 -chrXVI 305240 306246 HC_gene_8871_tx_1 1 + 305240 306246 . 2 67,831 0,176 -chrXVI 305240 306246 HC_gene_8871_tx_2 3 + 305240 306246 . 2 61,835 0,172 -chrXVI 305240 306246 HC_gene_8871_tx_3 37 + 305240 306246 . 2 67,835 0,172 -chrXVI 305240 306246 HC_gene_8871_tx_4 1 + 305240 306246 . 2 61,831 0,176 -chrXVI 305240 306246 HC_gene_8871_tx_5 84 + 305240 306246 . 1 1007 0 -chrXVI 305402 306246 HC_gene_8871_tx_6 23 + 305402 306246 . 1 845 0 -chrXVI 305698 306246 HC_gene_8871_tx_7 29 + 305698 306246 . 1 549 0 -chrXVI 305886 306246 HC_gene_8871_tx_8 20 + 305886 306246 . 1 361 0 -chrXVI 306253 308309 HC_gene_9262_tx_1 1 - 306253 308309 . 2 1051,958 0,1099 -chrXVI 306253 308309 HC_gene_9262_tx_2 15 - 306253 308309 . 1 2057 0 -chrXVI 306461 308565 LC_gene_8872_tx_1 1 + 306461 308565 . 1 2105 0 -chrXVI 308416 309025 HC_gene_9263_tx_1 1 - 308416 309025 . 1 610 0 -chrXVI 308416 309315 HC_gene_9263_tx_8 1 - 308416 309315 . 1 900 0 -chrXVI 308416 309460 HC_gene_9263_tx_9 1 - 308416 309460 . 1 1045 0 -chrXVI 308416 309640 HC_gene_9263_tx_10 3 - 308416 309640 . 1 1225 0 -chrXVI 308491 309025 HC_gene_9263_tx_2 5 - 308491 309025 . 1 535 0 -chrXVI 308491 309315 HC_gene_9263_tx_11 14 - 308491 309315 . 1 825 0 -chrXVI 308491 309460 HC_gene_9263_tx_12 13 - 308491 309460 . 1 970 0 -chrXVI 308491 309640 HC_gene_9263_tx_13 34 - 308491 309640 . 1 1150 0 -chrXVI 308569 309025 HC_gene_9263_tx_3 2 - 308569 309025 . 1 457 0 -chrXVI 308569 309315 HC_gene_9263_tx_14 5 - 308569 309315 . 1 747 0 -chrXVI 308569 309460 HC_gene_9263_tx_15 4 - 308569 309460 . 1 892 0 -chrXVI 308569 309640 HC_gene_9263_tx_16 23 - 308569 309640 . 1 1072 0 -chrXVI 308569 309640 HC_gene_9263_tx_17 1 - 308569 309640 . 2 895,85 0,987 -chrXVI 308603 309760 MC_gene_8873_tx_1 1 + 308603 309760 . 1 1158 0 -chrXVI 308652 309315 HC_gene_9263_tx_18 1 - 308652 309315 . 1 664 0 -chrXVI 308653 309025 HC_gene_9263_tx_4 1 - 308653 309025 . 1 373 0 -chrXVI 308655 309640 HC_gene_9263_tx_19 1 - 308655 309640 . 2 44,885 0,101 -chrXVI 308659 309025 HC_gene_9263_tx_5 1 - 308659 309025 . 1 367 0 -chrXVI 308662 309025 HC_gene_9263_tx_6 1 - 308662 309025 . 1 364 0 -chrXVI 308662 309640 HC_gene_9263_tx_20 1 - 308662 309640 . 1 979 0 -chrXVI 308663 309640 HC_gene_9263_tx_21 1 - 308663 309640 . 1 978 0 -chrXVI 308670 309460 HC_gene_9263_tx_22 1 - 308670 309460 . 1 791 0 -chrXVI 308671 309640 HC_gene_9263_tx_23 1 - 308671 309640 . 1 970 0 -chrXVI 308672 309640 HC_gene_9263_tx_24 1 - 308672 309640 . 1 969 0 -chrXVI 308679 309640 HC_gene_9263_tx_25 1 - 308679 309640 . 1 962 0 -chrXVI 308680 309640 HC_gene_9263_tx_26 1 - 308680 309640 . 1 961 0 -chrXVI 308682 309640 HC_gene_9263_tx_27 1 - 308682 309640 . 1 959 0 -chrXVI 308685 309315 HC_gene_9263_tx_28 1 - 308685 309315 . 1 631 0 -chrXVI 308686 309460 HC_gene_9263_tx_29 1 - 308686 309460 . 1 775 0 -chrXVI 308686 309640 HC_gene_9263_tx_30 5 - 308686 309640 . 1 955 0 -chrXVI 308690 309640 HC_gene_9263_tx_31 3 - 308690 309640 . 1 951 0 -chrXVI 308691 309315 HC_gene_9263_tx_32 1 - 308691 309315 . 1 625 0 -chrXVI 308693 309640 HC_gene_9263_tx_33 1 - 308693 309640 . 1 948 0 -chrXVI 308694 309640 HC_gene_9263_tx_34 3 - 308694 309640 . 1 947 0 -chrXVI 308696 309640 HC_gene_9263_tx_35 1 - 308696 309640 . 1 945 0 -chrXVI 308699 309640 HC_gene_9263_tx_36 1 - 308699 309640 . 1 942 0 -chrXVI 308701 309640 HC_gene_9263_tx_37 2 - 308701 309640 . 1 940 0 -chrXVI 308703 309025 HC_gene_9263_tx_7 1 - 308703 309025 . 1 323 0 -chrXVI 310173 313011 HC_gene_8874_tx_1 24 + 310173 313011 . 1 2839 0 -chrXVI 310173 313011 HC_gene_8874_tx_2 1 + 310173 313011 . 2 63,2561 0,278 -chrXVI 310173 313011 HC_gene_8874_tx_3 1 + 310173 313011 . 2 291,1740 0,1099 -chrXVI 310261 313011 HC_gene_8874_tx_4 4 + 310261 313011 . 1 2751 0 -chrXVI 311262 313011 HC_gene_8874_tx_5 7 + 311262 313011 . 1 1750 0 -chrXVI 312266 313011 HC_gene_8874_tx_6 15 + 312266 313011 . 1 746 0 -chrXVI 313258 316559 HC_gene_8875_tx_1 4 + 313258 316559 . 1 3302 0 -chrXVI 314428 316559 HC_gene_8875_tx_2 3 + 314428 316559 . 1 2132 0 -chrXVI 315452 316559 HC_gene_8875_tx_3 4 + 315452 316559 . 1 1108 0 -chrXVI 316727 317617 HC_gene_8876_tx_1 33 + 316727 317617 . 1 891 0 -chrXVI 316727 317617 HC_gene_8876_tx_2 1 + 316727 317617 . 2 413,430 0,461 -chrXVI 317085 317617 HC_gene_8876_tx_3 1 + 317085 317617 . 1 533 0 -chrXVI 317428 318716 HC_gene_9264_tx_1 3 - 317428 318716 . 1 1289 0 -chrXVI 317428 318881 HC_gene_9264_tx_2 2 - 317428 318881 . 1 1454 0 -chrXVI 317428 318989 HC_gene_9264_tx_3 13 - 317428 318989 . 1 1562 0 -chrXVI 317428 318989 HC_gene_9264_tx_4 1 - 317428 318989 . 2 933,358 0,1204 -chrXVI 318982 319243 HC_gene_8877_tx_1 1 + 318982 319243 . 1 262 0 -chrXVI 319150 320794 HC_gene_9265_tx_1 22 - 319150 320794 . 1 1645 0 -chrXVI 320985 321829 LC_gene_8878_tx_1 1 + 320985 321829 . 1 845 0 -chrXVI 322054 323845 HC_gene_8879_tx_1 5 + 322054 323845 . 1 1792 0 -chrXVI 322054 323988 HC_gene_8879_tx_2 1 + 322054 323988 . 1 1935 0 -chrXVI 323766 326325 MC_gene_9266_tx_1 1 - 323766 326325 . 1 2560 0 -chrXVI 323777 324239 MC_gene_9266_tx_2 1 - 323777 324239 . 1 463 0 -chrXVI 324157 324928 MC_gene_8880_tx_1 1 + 324157 324928 . 1 772 0 -chrXVI 326541 327762 HC_gene_8881_tx_1 88 + 326541 327762 . 1 1222 0 -chrXVI 326541 327762 HC_gene_8881_tx_2 1 + 326541 327762 . 2 570,603 0,619 -chrXVI 326541 327762 HC_gene_8881_tx_3 1 + 326541 327762 . 2 779,392 0,830 -chrXVI 326620 327762 HC_gene_8881_tx_4 5 + 326620 327762 . 1 1143 0 -chrXVI 326871 327762 HC_gene_8881_tx_5 21 + 326871 327762 . 1 892 0 -chrXVI 327805 328178 HC_gene_9267_tx_1 27 - 327805 328178 . 1 374 0 -chrXVI 327805 328248 HC_gene_9267_tx_2 22 - 327805 328248 . 1 444 0 -chrXVI 327805 328430 HC_gene_9267_tx_3 12 - 327805 328430 . 1 626 0 -chrXVI 327805 328492 HC_gene_9267_tx_4 21 - 327805 328492 . 1 688 0 -chrXVI 327805 328830 HC_gene_9267_tx_5 174 - 327805 328830 . 1 1026 0 -chrXVI 327805 328904 HC_gene_9267_tx_6 20 - 327805 328904 . 1 1100 0 -chrXVI 329471 331831 MC_gene_8882_tx_1 1 + 329471 331831 . 1 2361 0 -chrXVI 331719 334540 HC_gene_9268_tx_1 1 - 331719 334540 . 1 2822 0 -chrXVI 331854 335582 HC_gene_9269_tx_1 1 - 331854 335582 . 1 3729 0 -chrXVI 331854 335709 HC_gene_9269_tx_2 1 - 331854 335709 . 1 3856 0 -chrXVI 333774 335709 HC_gene_9269_tx_3 1 - 333774 335709 . 1 1936 0 -chrXVI 335813 337176 HC_gene_9270_tx_1 5 - 335813 337176 . 1 1364 0 -chrXVI 335937 337473 HC_gene_8883_tx_1 5 + 335937 337473 . 1 1537 0 -chrXVI 337317 338561 HC_gene_9271_tx_1 3 - 337317 338561 . 1 1245 0 -chrXVI 337317 338711 HC_gene_9271_tx_2 60 - 337317 338711 . 1 1395 0 -chrXVI 338818 339270 LC_gene_8884_tx_1 1 + 338818 339270 . 1 453 0 -chrXVI 339498 340524 LC_gene_9272_tx_1 1 - 339498 340524 . 1 1027 0 -chrXVI 339897 341070 HC_gene_8885_tx_1 62 + 339897 341070 . 1 1174 0 -chrXVI 340178 341070 HC_gene_8885_tx_2 11 + 340178 341070 . 1 893 0 -chrXVI 340304 341070 HC_gene_8885_tx_3 4 + 340304 341070 . 1 767 0 -chrXVI 340962 342104 HC_gene_9273_tx_1 3 - 340962 342104 . 1 1143 0 -chrXVI 340962 344939 HC_gene_9273_tx_2 3 - 340962 344939 . 1 3978 0 -chrXVI 340962 344939 HC_gene_9273_tx_3 1 - 340962 344939 . 4 865,127,146,2199 0,1055,1404,1779 -chrXVI 342961 343505 LC_gene_8886_tx_1 1 + 342961 343505 . 1 545 0 -chrXVI 344898 347467 HC_gene_9274_tx_1 1 - 344898 347467 . 2 547,1875 0,695 -chrXVI 345198 347467 HC_gene_9274_tx_2 1 - 345198 347467 . 1 2270 0 -chrXVI 345198 347467 HC_gene_9274_tx_3 1 - 345198 347467 . 2 230,1879 0,391 -chrXVI 345547 347395 LC_gene_8887_tx_1 1 + 345547 347395 . 1 1849 0 -chrXVI 347567 348284 HC_gene_9275_tx_1 13 - 347567 348284 . 1 718 0 -chrXVI 347657 348067 LC_gene_8888_tx_1 1 + 347657 348067 . 1 411 0 -chrXVI 348460 349057 HC_gene_8889_tx_1 2 + 348460 349057 . 1 598 0 -chrXVI 348460 349059 HC_gene_8889_tx_2 1 + 348460 349059 . 1 600 0 -chrXVI 348460 349060 HC_gene_8889_tx_3 1 + 348460 349060 . 1 601 0 -chrXVI 348460 349061 HC_gene_8889_tx_4 5 + 348460 349061 . 1 602 0 -chrXVI 348460 349062 HC_gene_8889_tx_5 1 + 348460 349062 . 1 603 0 -chrXVI 348460 349063 HC_gene_8889_tx_6 3 + 348460 349063 . 1 604 0 -chrXVI 348460 349070 HC_gene_8889_tx_7 1 + 348460 349070 . 1 611 0 -chrXVI 348460 349095 HC_gene_8889_tx_8 2 + 348460 349095 . 1 636 0 -chrXVI 348460 349107 HC_gene_8889_tx_9 1 + 348460 349107 . 1 648 0 -chrXVI 348460 349110 HC_gene_8889_tx_10 1 + 348460 349110 . 1 651 0 -chrXVI 348460 349111 HC_gene_8889_tx_11 2 + 348460 349111 . 1 652 0 -chrXVI 348460 349116 HC_gene_8889_tx_12 1 + 348460 349116 . 1 657 0 -chrXVI 348460 349121 HC_gene_8889_tx_13 1 + 348460 349121 . 1 662 0 -chrXVI 348460 349126 HC_gene_8889_tx_14 1 + 348460 349126 . 1 667 0 -chrXVI 348460 349127 HC_gene_8889_tx_15 1 + 348460 349127 . 1 668 0 -chrXVI 348460 349128 HC_gene_8889_tx_16 1 + 348460 349128 . 1 669 0 -chrXVI 348460 349131 HC_gene_8889_tx_17 1 + 348460 349131 . 1 672 0 -chrXVI 348460 349134 HC_gene_8889_tx_18 2 + 348460 349134 . 1 675 0 -chrXVI 348460 349139 HC_gene_8889_tx_19 2 + 348460 349139 . 1 680 0 -chrXVI 348460 349140 HC_gene_8889_tx_20 1 + 348460 349140 . 1 681 0 -chrXVI 348460 349144 HC_gene_8889_tx_21 1 + 348460 349144 . 1 685 0 -chrXVI 348460 349145 HC_gene_8889_tx_22 4 + 348460 349145 . 1 686 0 -chrXVI 348467 349090 HC_gene_8889_tx_23 1 + 348467 349090 . 1 624 0 -chrXVI 348471 349083 HC_gene_8889_tx_24 1 + 348471 349083 . 1 613 0 -chrXVI 348479 349083 HC_gene_8889_tx_25 1 + 348479 349083 . 1 605 0 -chrXVI 349075 349918 HC_gene_8890_tx_1 12 + 349075 349918 . 1 844 0 -chrXVI 349075 350075 HC_gene_8890_tx_2 20 + 349075 350075 . 1 1001 0 -chrXVI 349108 349633 LC_gene_9276_tx_1 1 - 349108 349633 . 1 526 0 -chrXVI 349166 349918 HC_gene_8890_tx_3 1 + 349166 349918 . 1 753 0 -chrXVI 349166 350075 HC_gene_8890_tx_4 1 + 349166 350075 . 1 910 0 -chrXVI 349317 349918 HC_gene_8890_tx_6 4 + 349317 349918 . 1 602 0 -chrXVI 349317 350075 HC_gene_8890_tx_5 5 + 349317 350075 . 1 759 0 -chrXVI 349840 351462 HC_gene_9277_tx_1 1 - 349840 351462 . 1 1623 0 -chrXVI 350051 350429 HC_gene_9277_tx_20 183 - 350051 350429 . 1 379 0 -chrXVI 350051 350862 HC_gene_9277_tx_2 179 - 350051 350862 . 1 812 0 -chrXVI 350051 351041 HC_gene_9277_tx_3 67 - 350051 351041 . 1 991 0 -chrXVI 350051 351249 HC_gene_9277_tx_4 11 - 350051 351249 . 1 1199 0 -chrXVI 350051 351329 HC_gene_9277_tx_5 24 - 350051 351329 . 1 1279 0 -chrXVI 350051 351462 HC_gene_9277_tx_6 11 - 350051 351462 . 1 1412 0 -chrXVI 350051 351576 HC_gene_9277_tx_7 10 - 350051 351576 . 1 1526 0 -chrXVI 350051 351576 HC_gene_9277_tx_8 1 - 350051 351576 . 2 930,502 0,1024 -chrXVI 350051 351701 HC_gene_9277_tx_9 14 - 350051 351701 . 1 1651 0 -chrXVI 350051 351972 HC_gene_9277_tx_10 13 - 350051 351972 . 1 1922 0 -chrXVI 350051 352058 HC_gene_9277_tx_11 2 - 350051 352058 . 1 2008 0 -chrXVI 350051 352058 HC_gene_9277_tx_12 1 - 350051 352058 . 2 875,207 0,1801 -chrXVI 350051 352127 HC_gene_9277_tx_13 11 - 350051 352127 . 1 2077 0 -chrXVI 350051 352127 HC_gene_9277_tx_14 1 - 350051 352127 . 2 1249,354 0,1723 -chrXVI 350051 352127 HC_gene_9277_tx_15 1 - 350051 352127 . 2 692,342 0,1735 -chrXVI 350051 352321 HC_gene_9277_tx_16 117 - 350051 352321 . 1 2271 0 -chrXVI 350051 352321 HC_gene_9277_tx_17 1 - 350051 352321 . 2 1405,299 0,1972 -chrXVI 350051 352321 HC_gene_9277_tx_18 1 - 350051 352321 . 2 1915,263 0,2008 -chrXVI 350051 352321 HC_gene_9277_tx_19 1 - 350051 352321 . 2 940,1040 0,1231 -chrXVI 352618 352805 HC_gene_8891_tx_1 5 + 352618 352805 . 1 188 0 -chrXVI 352638 352805 HC_gene_8891_tx_2 1 + 352638 352805 . 1 168 0 -chrXVI 352657 352805 HC_gene_8891_tx_3 1 + 352657 352805 . 1 149 0 -chrXVI 352748 353317 HC_gene_9278_tx_1 32 - 352748 353317 . 1 570 0 -chrXVI 352748 354177 HC_gene_9278_tx_2 14 - 352748 354177 . 1 1430 0 -chrXVI 352748 354321 HC_gene_9278_tx_3 2 - 352748 354321 . 1 1574 0 -chrXVI 352748 354321 HC_gene_9278_tx_4 1 - 352748 354321 . 2 548,944 0,630 -chrXVI 352748 355227 HC_gene_9278_tx_5 6 - 352748 355227 . 1 2480 0 -chrXVI 352748 355436 HC_gene_9278_tx_6 23 - 352748 355436 . 1 2689 0 -chrXVI 352748 355436 HC_gene_9278_tx_7 1 - 352748 355436 . 2 31,2548 0,141 -chrXVI 355654 357814 HC_gene_8892_tx_1 9 + 355654 357814 . 1 2161 0 -chrXVI 355654 357814 HC_gene_8892_tx_2 1 + 355654 357814 . 2 111,1645 0,516 -chrXVI 355654 357925 HC_gene_8892_tx_3 1 + 355654 357925 . 1 2272 0 -chrXVI 355837 357814 HC_gene_8892_tx_4 1 + 355837 357814 . 1 1978 0 -chrXVI 357690 358909 HC_gene_9279_tx_1 2 - 357690 358909 . 1 1220 0 -chrXVI 357690 359426 HC_gene_9279_tx_3 8 - 357690 359426 . 1 1737 0 -chrXVI 357690 359426 HC_gene_9279_tx_4 1 - 357690 359426 . 2 719,965 0,772 -chrXVI 357857 358909 HC_gene_9279_tx_2 1 - 357857 358909 . 1 1053 0 -chrXVI 357857 359426 HC_gene_9279_tx_5 10 - 357857 359426 . 1 1570 0 -chrXVI 357857 359426 HC_gene_9279_tx_6 1 - 357857 359426 . 2 657,830 0,740 -chrXVI 357857 359426 HC_gene_9279_tx_7 1 - 357857 359426 . 2 657,853 0,717 -chrXVI 357857 359426 HC_gene_9279_tx_8 1 - 357857 359426 . 2 620,868 0,702 -chrXVI 359283 359691 MC_gene_8893_tx_1 1 + 359283 359691 . 1 409 0 -chrXVI 360169 361700 HC_gene_8894_tx_1 33 + 360169 361700 . 1 1532 0 -chrXVI 360511 361700 HC_gene_8894_tx_2 4 + 360511 361700 . 1 1190 0 -chrXVI 361818 363417 HC_gene_8895_tx_1 20 + 361818 363417 . 1 1600 0 -chrXVI 361818 363417 HC_gene_8895_tx_2 1 + 361818 363417 . 2 923,628 0,972 -chrXVI 362479 363417 HC_gene_8895_tx_3 5 + 362479 363417 . 1 939 0 -chrXVI 362904 363417 HC_gene_8895_tx_4 2 + 362904 363417 . 1 514 0 -chrXVI 363009 363417 HC_gene_8895_tx_5 3 + 363009 363417 . 1 409 0 -chrXVI 363182 363824 HC_gene_9280_tx_1 9 - 363182 363824 . 1 643 0 -chrXVI 363182 364095 HC_gene_9280_tx_2 27 - 363182 364095 . 1 914 0 -chrXVI 363437 364095 HC_gene_9280_tx_3 6 - 363437 364095 . 1 659 0 -chrXVI 363868 364261 HC_gene_8896_tx_1 1 + 363868 364261 . 1 394 0 -chrXVI 363868 364399 HC_gene_8896_tx_2 2 + 363868 364399 . 1 532 0 -chrXVI 364183 364536 HC_gene_9281_tx_1 18 - 364183 364536 . 1 354 0 -chrXVI 364183 364785 HC_gene_9281_tx_2 217 - 364183 364785 . 1 603 0 -chrXVI 364931 366541 HC_gene_8897_tx_1 11 + 364931 366541 . 1 1611 0 -chrXVI 365142 366541 HC_gene_8897_tx_2 2 + 365142 366541 . 1 1400 0 -chrXVI 366409 366788 HC_gene_9282_tx_1 94 - 366409 366788 . 1 380 0 -chrXVI 366465 366788 HC_gene_9282_tx_2 10 - 366465 366788 . 1 324 0 -chrXVI 366910 368124 HC_gene_8898_tx_1 30 + 366910 368124 . 1 1215 0 -chrXVI 366910 368124 HC_gene_8898_tx_2 1 + 366910 368124 . 2 860,302 0,913 -chrXVI 366910 368124 HC_gene_8898_tx_3 1 + 366910 368124 . 2 349,683 0,532 -chrXVI 367226 368124 HC_gene_8898_tx_4 3 + 367226 368124 . 1 899 0 -chrXVI 367306 368124 HC_gene_8898_tx_5 6 + 367306 368124 . 1 819 0 -chrXVI 367618 368124 HC_gene_8898_tx_6 6 + 367618 368124 . 1 507 0 -chrXVI 368018 368640 HC_gene_9283_tx_1 37 - 368018 368640 . 1 623 0 -chrXVI 368018 369130 HC_gene_9283_tx_2 5 - 368018 369130 . 1 1113 0 -chrXVI 368018 369130 HC_gene_9283_tx_3 1 - 368018 369130 . 2 263,262 0,851 -chrXVI 368018 369475 HC_gene_9283_tx_4 3 - 368018 369475 . 1 1458 0 -chrXVI 368796 369625 HC_gene_8899_tx_1 8 + 368796 369625 . 1 830 0 -chrXVI 368796 369860 HC_gene_8899_tx_2 1 + 368796 369860 . 1 1065 0 -chrXVI 369517 370682 HC_gene_9284_tx_1 4 - 369517 370682 . 1 1166 0 -chrXVI 369775 370024 HC_gene_9284_tx_2 17 - 369775 370024 . 1 250 0 -chrXVI 369775 370310 HC_gene_9284_tx_3 15 - 369775 370310 . 1 536 0 -chrXVI 369775 370486 HC_gene_9284_tx_4 24 - 369775 370486 . 1 712 0 -chrXVI 369775 370554 HC_gene_9284_tx_5 13 - 369775 370554 . 1 780 0 -chrXVI 369775 370682 HC_gene_9284_tx_6 143 - 369775 370682 . 1 908 0 -chrXVI 370915 373023 HC_gene_8900_tx_1 51 + 370915 373023 . 1 2109 0 -chrXVI 370915 373023 HC_gene_8900_tx_2 1 + 370915 373023 . 2 1003,1018 0,1091 -chrXVI 370915 373163 HC_gene_8900_tx_3 49 + 370915 373163 . 1 2249 0 -chrXVI 370915 373163 HC_gene_8900_tx_4 1 + 370915 373163 . 2 465,1398 0,851 -chrXVI 370915 373163 HC_gene_8900_tx_5 1 + 370915 373163 . 2 1590,612 0,1637 -chrXVI 370915 373163 HC_gene_8900_tx_6 1 + 370915 373163 . 2 636,1191 0,1058 -chrXVI 370915 373163 HC_gene_8900_tx_7 1 + 370915 373163 . 2 1588,539 0,1710 -chrXVI 370917 373163 HC_gene_8900_tx_8 1 + 370917 373163 . 2 1317,869 0,1378 -chrXVI 371177 373023 HC_gene_8900_tx_9 4 + 371177 373023 . 1 1847 0 -chrXVI 371177 373163 HC_gene_8900_tx_10 4 + 371177 373163 . 1 1987 0 -chrXVI 371918 373023 HC_gene_8900_tx_11 7 + 371918 373023 . 1 1106 0 -chrXVI 371918 373163 HC_gene_8900_tx_12 9 + 371918 373163 . 1 1246 0 -chrXVI 372162 373023 HC_gene_8900_tx_13 9 + 372162 373023 . 1 862 0 -chrXVI 372162 373163 HC_gene_8900_tx_14 22 + 372162 373163 . 1 1002 0 -chrXVI 372229 373023 HC_gene_8900_tx_15 5 + 372229 373023 . 1 795 0 -chrXVI 372229 373163 HC_gene_8900_tx_16 6 + 372229 373163 . 1 935 0 -chrXVI 372321 373083 LC_gene_9285_tx_1 1 - 372321 373083 . 1 763 0 -chrXVI 373639 375262 HC_gene_8901_tx_1 1 + 373639 375262 . 1 1624 0 -chrXVI 373642 375262 HC_gene_8901_tx_2 1 + 373642 375262 . 1 1621 0 -chrXVI 373647 375260 HC_gene_8901_tx_3 1 + 373647 375260 . 1 1614 0 -chrXVI 373647 375262 HC_gene_8901_tx_4 1 + 373647 375262 . 1 1616 0 -chrXVI 373648 375224 HC_gene_8901_tx_5 2 + 373648 375224 . 1 1577 0 -chrXVI 373648 375225 HC_gene_8901_tx_6 1 + 373648 375225 . 1 1578 0 -chrXVI 373648 375226 HC_gene_8901_tx_7 4 + 373648 375226 . 1 1579 0 -chrXVI 373648 375227 HC_gene_8901_tx_8 3 + 373648 375227 . 1 1580 0 -chrXVI 373648 375228 HC_gene_8901_tx_9 1 + 373648 375228 . 1 1581 0 -chrXVI 373648 375230 HC_gene_8901_tx_10 1 + 373648 375230 . 1 1583 0 -chrXVI 373648 375232 HC_gene_8901_tx_11 2 + 373648 375232 . 1 1585 0 -chrXVI 373648 375233 HC_gene_8901_tx_12 1 + 373648 375233 . 1 1586 0 -chrXVI 373648 375234 HC_gene_8901_tx_13 1 + 373648 375234 . 1 1587 0 -chrXVI 373648 375236 HC_gene_8901_tx_14 1 + 373648 375236 . 1 1589 0 -chrXVI 373648 375237 HC_gene_8901_tx_15 1 + 373648 375237 . 1 1590 0 -chrXVI 373648 375239 HC_gene_8901_tx_16 2 + 373648 375239 . 1 1592 0 -chrXVI 373648 375242 HC_gene_8901_tx_17 1 + 373648 375242 . 1 1595 0 -chrXVI 373648 375263 HC_gene_8901_tx_18 1 + 373648 375263 . 2 295,899 0,717 -chrXVI 373648 375268 HC_gene_8901_tx_19 8 + 373648 375268 . 1 1621 0 -chrXVI 373648 375560 HC_gene_8901_tx_20 1 + 373648 375560 . 1 1913 0 -chrXVI 373649 375246 HC_gene_8901_tx_21 1 + 373649 375246 . 1 1598 0 -chrXVI 373650 375260 HC_gene_8901_tx_22 1 + 373650 375260 . 1 1611 0 -chrXVI 373652 375247 HC_gene_8901_tx_23 1 + 373652 375247 . 1 1596 0 -chrXVI 373657 375262 HC_gene_8901_tx_24 2 + 373657 375262 . 1 1606 0 -chrXVI 373658 375251 HC_gene_8901_tx_25 1 + 373658 375251 . 1 1594 0 -chrXVI 373660 375253 HC_gene_8901_tx_26 1 + 373660 375253 . 1 1594 0 -chrXVI 373661 375251 HC_gene_8901_tx_27 1 + 373661 375251 . 1 1591 0 -chrXVI 373665 375246 HC_gene_8901_tx_28 1 + 373665 375246 . 1 1582 0 -chrXVI 373671 375247 HC_gene_8901_tx_29 1 + 373671 375247 . 1 1577 0 -chrXVI 373671 375253 HC_gene_8901_tx_30 1 + 373671 375253 . 1 1583 0 -chrXVI 373671 375262 HC_gene_8901_tx_31 1 + 373671 375262 . 1 1592 0 -chrXVI 373672 375263 HC_gene_8901_tx_32 1 + 373672 375263 . 1 1592 0 -chrXVI 373675 375262 HC_gene_8901_tx_33 1 + 373675 375262 . 1 1588 0 -chrXVI 373679 375260 HC_gene_8901_tx_34 1 + 373679 375260 . 1 1582 0 -chrXVI 373799 375226 HC_gene_8901_tx_35 3 + 373799 375226 . 1 1428 0 -chrXVI 373799 375233 HC_gene_8901_tx_36 1 + 373799 375233 . 1 1435 0 -chrXVI 373799 375268 HC_gene_8901_tx_37 1 + 373799 375268 . 1 1470 0 -chrXVI 374133 375224 HC_gene_8901_tx_38 1 + 374133 375224 . 1 1092 0 -chrXVI 374133 375225 HC_gene_8901_tx_39 1 + 374133 375225 . 1 1093 0 -chrXVI 374133 375226 HC_gene_8901_tx_40 1 + 374133 375226 . 1 1094 0 -chrXVI 374133 375233 HC_gene_8901_tx_41 1 + 374133 375233 . 1 1101 0 -chrXVI 374133 375236 HC_gene_8901_tx_42 1 + 374133 375236 . 1 1104 0 -chrXVI 374133 375237 HC_gene_8901_tx_43 1 + 374133 375237 . 1 1105 0 -chrXVI 374133 375254 HC_gene_8901_tx_44 1 + 374133 375254 . 2 750,294 0,828 -chrXVI 374133 375266 HC_gene_8901_tx_45 1 + 374133 375266 . 1 1134 0 -chrXVI 375211 375560 HC_gene_8901_tx_46 1 + 375211 375560 . 1 350 0 -chrXVI 375240 375560 HC_gene_8901_tx_47 1 + 375240 375560 . 1 321 0 -chrXVI 375246 375560 HC_gene_8901_tx_48 5 + 375246 375560 . 1 315 0 -chrXVI 375484 376546 LC_gene_9286_tx_1 1 - 375484 376546 . 1 1063 0 -chrXVI 375501 377077 HC_gene_8902_tx_1 72 + 375501 377077 . 1 1577 0 -chrXVI 375501 377077 HC_gene_8902_tx_2 1 + 375501 377077 . 2 125,1397 0,180 -chrXVI 375501 377077 HC_gene_8902_tx_3 1 + 375501 377077 . 2 998,512 0,1065 -chrXVI 375501 377183 HC_gene_8902_tx_4 13 + 375501 377183 . 1 1683 0 -chrXVI 375605 377077 HC_gene_8902_tx_5 15 + 375605 377077 . 1 1473 0 -chrXVI 375605 377183 HC_gene_8902_tx_6 1 + 375605 377183 . 1 1579 0 -chrXVI 375957 377077 HC_gene_8902_tx_7 4 + 375957 377077 . 1 1121 0 -chrXVI 376009 377077 HC_gene_8902_tx_8 10 + 376009 377077 . 1 1069 0 -chrXVI 376009 377183 HC_gene_8902_tx_9 2 + 376009 377183 . 1 1175 0 -chrXVI 376187 377077 HC_gene_8902_tx_10 14 + 376187 377077 . 1 891 0 -chrXVI 376187 377183 HC_gene_8902_tx_11 2 + 376187 377183 . 1 997 0 -chrXVI 377126 377704 HC_gene_9287_tx_1 399 - 377126 377704 . 1 579 0 -chrXVI 377126 377862 HC_gene_9287_tx_2 233 - 377126 377862 . 1 737 0 -chrXVI 377126 378010 HC_gene_9287_tx_3 1047 - 377126 378010 . 1 885 0 -chrXVI 377126 378425 HC_gene_9287_tx_4 186 - 377126 378425 . 2 870,36 0,1264 -chrXVI 377126 378425 HC_gene_9287_tx_5 36 - 377126 378425 . 1 1300 0 -chrXVI 378965 379216 HC_gene_9288_tx_1 7 - 378965 379216 . 1 252 0 -chrXVI 378965 379479 HC_gene_9288_tx_2 13 - 378965 379479 . 1 515 0 -chrXVI 378965 379532 HC_gene_9288_tx_3 12 - 378965 379532 . 1 568 0 -chrXVI 378965 379606 HC_gene_9288_tx_4 9 - 378965 379606 . 1 642 0 -chrXVI 378965 379876 HC_gene_9288_tx_5 11 - 378965 379876 . 1 912 0 -chrXVI 378965 381096 HC_gene_9288_tx_6 6 - 378965 381096 . 1 2132 0 -chrXVI 378965 381096 HC_gene_9288_tx_7 1 - 378965 381096 . 2 1223,243 0,1889 -chrXVI 378965 381096 HC_gene_9288_tx_8 1 - 378965 381096 . 2 1506,490 0,1642 -chrXVI 378965 381239 HC_gene_9288_tx_9 3 - 378965 381239 . 1 2275 0 -chrXVI 378965 381361 HC_gene_9288_tx_10 8 - 378965 381361 . 1 2397 0 -chrXVI 378965 381361 HC_gene_9288_tx_11 1 - 378965 381361 . 2 2159,182 0,2215 -chrXVI 379636 381286 HC_gene_8903_tx_1 1 + 379636 381286 . 1 1651 0 -chrXVI 381325 381907 HC_gene_8904_tx_1 6 + 381325 381907 . 1 583 0 -chrXVI 381439 381907 HC_gene_8904_tx_2 1 + 381439 381907 . 1 469 0 -chrXVI 381549 381907 HC_gene_8904_tx_3 1 + 381549 381907 . 1 359 0 -chrXVI 381623 381907 HC_gene_8904_tx_4 12 + 381623 381907 . 1 285 0 -chrXVI 381623 382446 HC_gene_8904_tx_5 1 + 381623 382446 . 1 824 0 -chrXVI 381623 383078 HC_gene_8904_tx_6 6 + 381623 383078 . 1 1456 0 -chrXVI 381812 383078 HC_gene_8904_tx_7 1 + 381812 383078 . 1 1267 0 -chrXVI 381948 382958 MC_gene_9289_tx_1 1 - 381948 382958 . 1 1011 0 -chrXVI 381951 383078 HC_gene_8904_tx_8 181 + 381951 383078 . 1 1128 0 -chrXVI 381951 383078 HC_gene_8904_tx_9 1 + 381951 383078 . 2 471,426 0,702 -chrXVI 381951 383078 HC_gene_8904_tx_10 1 + 381951 383078 . 2 601,439 0,689 -chrXVI 382982 383264 MC_gene_9290_tx_1 1 - 382982 383264 . 1 283 0 -chrXVI 383322 384515 HC_gene_8905_tx_1 80 + 383322 384515 . 1 1194 0 -chrXVI 383322 384515 HC_gene_8905_tx_2 1 + 383322 384515 . 2 438,663 0,531 -chrXVI 384652 385144 HC_gene_9291_tx_1 14 - 384652 385144 . 1 493 0 -chrXVI 384652 385906 HC_gene_9291_tx_2 4 - 384652 385906 . 1 1255 0 -chrXVI 384652 386476 HC_gene_9291_tx_3 43 - 384652 386476 . 1 1825 0 -chrXVI 384652 386476 HC_gene_9291_tx_4 1 - 384652 386476 . 2 781,979 0,846 -chrXVI 384652 386476 HC_gene_9291_tx_5 1 - 384652 386476 . 2 712,633 0,1192 -chrXVI 389533 393766 HC_gene_8906_tx_1 1 + 389533 393766 . 1 4234 0 -chrXVI 391553 393766 HC_gene_8906_tx_2 1 + 391553 393766 . 1 2214 0 -chrXVI 392502 393724 MC_gene_9292_tx_1 1 - 392502 393724 . 1 1223 0 -chrXVI 392965 393766 HC_gene_8906_tx_3 9 + 392965 393766 . 1 802 0 -chrXVI 393052 393766 HC_gene_8906_tx_4 2 + 393052 393766 . 1 715 0 -chrXVI 393089 393781 MC_gene_9293_tx_1 1 - 393089 393781 . 1 693 0 -chrXVI 393225 393765 MC_gene_9293_tx_2 1 - 393225 393765 . 1 541 0 -chrXVI 393244 393766 HC_gene_8906_tx_5 8 + 393244 393766 . 1 523 0 -chrXVI 393996 396617 HC_gene_8907_tx_1 1 + 393996 396617 . 3 720,973,784 0,792,1838 -chrXVI 393996 396723 HC_gene_8907_tx_2 6 + 393996 396723 . 1 2728 0 -chrXVI 393996 396723 HC_gene_8907_tx_3 1 + 393996 396723 . 2 1422,1165 0,1563 -chrXVI 396516 398139 HC_gene_9294_tx_1 1 - 396516 398139 . 2 1184,319 0,1305 -chrXVI 396516 398139 HC_gene_9294_tx_2 13 - 396516 398139 . 1 1624 0 -chrXVI 396516 398139 HC_gene_9294_tx_3 1 - 396516 398139 . 3 367,533,386 0,471,1238 -chrXVI 398349 398949 HC_gene_9295_tx_1 11 - 398349 398949 . 1 601 0 -chrXVI 398349 404224 HC_gene_9295_tx_2 2 - 398349 404224 . 1 5876 0 -chrXVI 404920 405393 HC_gene_8908_tx_1 1 + 404920 405393 . 1 474 0 -chrXVI 404920 405396 HC_gene_8908_tx_2 1 + 404920 405396 . 1 477 0 -chrXVI 404920 405408 HC_gene_8908_tx_3 1 + 404920 405408 . 1 489 0 -chrXVI 404920 405413 HC_gene_8908_tx_4 2 + 404920 405413 . 1 494 0 -chrXVI 404920 405438 HC_gene_8908_tx_5 1 + 404920 405438 . 1 519 0 -chrXVI 404920 405443 HC_gene_8908_tx_6 1 + 404920 405443 . 1 524 0 -chrXVI 404920 405446 HC_gene_8908_tx_7 1 + 404920 405446 . 1 527 0 -chrXVI 404920 405455 HC_gene_8908_tx_8 1 + 404920 405455 . 1 536 0 -chrXVI 404920 405462 HC_gene_8908_tx_9 1 + 404920 405462 . 1 543 0 -chrXVI 404920 405463 HC_gene_8908_tx_10 1 + 404920 405463 . 1 544 0 -chrXVI 404920 406244 HC_gene_8908_tx_11 33 + 404920 406244 . 2 37,787 0,538 -chrXVI 404920 406244 HC_gene_8908_tx_12 31 + 404920 406244 . 1 1325 0 -chrXVI 404920 406244 HC_gene_8908_tx_13 1 + 404920 406244 . 2 37,777 0,548 -chrXVI 404920 406244 HC_gene_8908_tx_14 1 + 404920 406244 . 2 1152,52 0,1273 -chrXVI 405561 406136 LC_gene_9296_tx_1 1 - 405561 406136 . 1 576 0 -chrXVI 405640 406244 HC_gene_8908_tx_15 53 + 405640 406244 . 1 605 0 -chrXVI 406609 407650 HC_gene_8909_tx_1 89 + 406609 407650 . 2 38,583 0,459 -chrXVI 406609 407650 HC_gene_8909_tx_2 32 + 406609 407650 . 1 1042 0 -chrXVI 407207 407650 HC_gene_8909_tx_3 2147 + 407207 407650 . 1 444 0 -chrXVI 407751 408169 HC_gene_9297_tx_1 67 - 407751 408169 . 1 419 0 -chrXVI 407751 408276 HC_gene_9297_tx_2 43 - 407751 408276 . 1 526 0 -chrXVI 407751 408544 HC_gene_9297_tx_3 39 - 407751 408544 . 1 794 0 -chrXVI 407751 408784 HC_gene_9297_tx_4 308 - 407751 408784 . 1 1034 0 -chrXVI 409014 410119 HC_gene_9298_tx_1 2 - 409014 410119 . 1 1106 0 -chrXVI 409077 410701 HC_gene_8910_tx_1 1 + 409077 410701 . 1 1625 0 -chrXVI 410296 411146 HC_gene_8911_tx_1 1 + 410296 411146 . 1 851 0 -chrXVI 410296 411426 HC_gene_8911_tx_2 1 + 410296 411426 . 1 1131 0 -chrXVI 410296 411539 HC_gene_8911_tx_3 1 + 410296 411539 . 1 1244 0 -chrXVI 410296 412056 HC_gene_8911_tx_6 4 + 410296 412056 . 1 1761 0 -chrXVI 410309 411459 HC_gene_8911_tx_4 1 + 410309 411459 . 1 1151 0 -chrXVI 410312 411458 HC_gene_8911_tx_5 1 + 410312 411458 . 1 1147 0 -chrXVI 410337 411184 MC_gene_9299_tx_1 1 - 410337 411184 . 1 848 0 -chrXVI 410480 411057 MC_gene_9299_tx_2 1 - 410480 411057 . 1 578 0 -chrXVI 410502 411683 MC_gene_9300_tx_1 1 - 410502 411683 . 1 1182 0 -chrXVI 410608 411345 MC_gene_9300_tx_2 1 - 410608 411345 . 1 738 0 -chrXVI 411446 412056 HC_gene_8911_tx_7 1 + 411446 412056 . 1 611 0 -chrXVI 411476 412158 MC_gene_9301_tx_1 1 - 411476 412158 . 1 683 0 -chrXVI 412181 415584 HC_gene_8912_tx_1 1 + 412181 415584 . 2 76,2589 0,815 -chrXVI 412197 415584 HC_gene_8912_tx_2 1 + 412197 415584 . 2 60,2589 0,799 -chrXVI 412378 415584 HC_gene_8912_tx_3 12 + 412378 415584 . 1 3207 0 -chrXVI 412378 415584 HC_gene_8912_tx_4 1 + 412378 415584 . 2 474,1090 0,2117 -chrXVI 412780 415584 HC_gene_8912_tx_5 2 + 412780 415584 . 1 2805 0 -chrXVI 413971 415584 HC_gene_8912_tx_6 6 + 413971 415584 . 1 1614 0 -chrXVI 414301 415584 HC_gene_8912_tx_7 5 + 414301 415584 . 1 1284 0 -chrXVI 415031 415584 HC_gene_8912_tx_8 10 + 415031 415584 . 1 554 0 -chrXVI 415412 415565 MC_gene_9302_tx_1 1 - 415412 415565 . 1 154 0 -chrXVI 415733 418166 HC_gene_8913_tx_1 5 + 415733 418166 . 1 2434 0 -chrXVI 416112 418166 HC_gene_8913_tx_2 1 + 416112 418166 . 1 2055 0 -chrXVI 416334 418166 HC_gene_8913_tx_3 1 + 416334 418166 . 1 1833 0 -chrXVI 416417 418166 HC_gene_8913_tx_4 5 + 416417 418166 . 1 1750 0 -chrXVI 416710 418166 HC_gene_8913_tx_5 1 + 416710 418166 . 1 1457 0 -chrXVI 418090 419609 LC_gene_9303_tx_1 1 - 418090 419609 . 1 1520 0 -chrXVI 418318 420060 HC_gene_8914_tx_1 4 + 418318 420060 . 1 1743 0 -chrXVI 418380 420060 HC_gene_8914_tx_2 8 + 418380 420060 . 1 1681 0 -chrXVI 419876 420565 HC_gene_9304_tx_1 9 - 419876 420565 . 1 690 0 -chrXVI 419958 420565 HC_gene_9304_tx_2 90 - 419958 420565 . 1 608 0 -chrXVI 420743 422890 HC_gene_8915_tx_1 3 + 420743 422890 . 1 2148 0 -chrXVI 420743 422972 HC_gene_8915_tx_2 14 + 420743 422972 . 1 2230 0 -chrXVI 422167 422972 HC_gene_8915_tx_3 1 + 422167 422972 . 1 806 0 -chrXVI 422685 423199 HC_gene_9305_tx_1 10 - 422685 423199 . 1 515 0 -chrXVI 422685 423925 HC_gene_9305_tx_2 31 - 422685 423925 . 1 1241 0 -chrXVI 422685 423925 HC_gene_9305_tx_3 1 - 422685 423925 . 2 381,201 0,1040 -chrXVI 422811 423925 HC_gene_9305_tx_4 6 - 422811 423925 . 1 1115 0 -chrXVI 422811 423925 HC_gene_9305_tx_5 1 - 422811 423925 . 2 588,318 0,797 -chrXVI 424147 425064 HC_gene_9306_tx_1 5 - 424147 425064 . 1 918 0 -chrXVI 424147 425152 HC_gene_9306_tx_2 29 - 424147 425152 . 1 1006 0 -chrXVI 424147 425152 HC_gene_9306_tx_3 1 - 424147 425152 . 2 38,922 0,84 -chrXVI 425169 425612 HC_gene_9307_tx_1 3 - 425169 425612 . 1 444 0 -chrXVI 425169 425871 HC_gene_9307_tx_2 1 - 425169 425871 . 1 703 0 -chrXVI 425169 425893 HC_gene_9307_tx_3 1 - 425169 425893 . 1 725 0 -chrXVI 425169 425901 HC_gene_9307_tx_4 1 - 425169 425901 . 1 733 0 -chrXVI 425169 425904 HC_gene_9307_tx_5 37 - 425169 425904 . 1 736 0 -chrXVI 425169 426616 HC_gene_9307_tx_6 1 - 425169 426616 . 1 1448 0 -chrXVI 425757 426014 HC_gene_8916_tx_1 4 + 425757 426014 . 1 258 0 -chrXVI 425757 426143 HC_gene_8916_tx_2 1 + 425757 426143 . 1 387 0 -chrXVI 425875 426014 HC_gene_8916_tx_3 1 + 425875 426014 . 1 140 0 -chrXVI 425875 427779 HC_gene_8916_tx_4 1 + 425875 427779 . 1 1905 0 -chrXVI 426067 427645 HC_gene_8916_tx_5 1 + 426067 427645 . 1 1579 0 -chrXVI 426067 427779 HC_gene_8916_tx_6 52 + 426067 427779 . 1 1713 0 -chrXVI 426067 427779 HC_gene_8916_tx_7 1 + 426067 427779 . 2 187,1465 0,248 -chrXVI 426067 427779 HC_gene_8916_tx_8 1 + 426067 427779 . 2 374,1165 0,548 -chrXVI 426067 427857 HC_gene_8916_tx_9 10 + 426067 427857 . 1 1791 0 -chrXVI 426777 427645 HC_gene_8916_tx_10 1 + 426777 427645 . 1 869 0 -chrXVI 426777 427779 HC_gene_8916_tx_11 8 + 426777 427779 . 1 1003 0 -chrXVI 426777 427857 HC_gene_8916_tx_12 1 + 426777 427857 . 1 1081 0 -chrXVI 427926 428713 HC_gene_8917_tx_1 31 + 427926 428713 . 1 788 0 -chrXVI 428583 429150 HC_gene_9308_tx_1 7 - 428583 429150 . 1 568 0 -chrXVI 428583 429216 HC_gene_9308_tx_2 12 - 428583 429216 . 1 634 0 -chrXVI 428583 429647 HC_gene_9308_tx_3 61 - 428583 429647 . 1 1065 0 -chrXVI 429814 431514 HC_gene_8918_tx_1 67 + 429814 431514 . 1 1701 0 -chrXVI 429814 431514 HC_gene_8918_tx_2 1 + 429814 431514 . 2 1065,519 0,1182 -chrXVI 429814 431514 HC_gene_8918_tx_3 1 + 429814 431514 . 2 631,1020 0,681 -chrXVI 429833 431514 HC_gene_8918_tx_4 1 + 429833 431514 . 2 524,1070 0,612 -chrXVI 430088 431514 HC_gene_8918_tx_5 7 + 430088 431514 . 1 1427 0 -chrXVI 430338 431514 HC_gene_8918_tx_6 18 + 430338 431514 . 1 1177 0 -chrXVI 430372 430840 LC_gene_9309_tx_1 1 - 430372 430840 . 1 469 0 -chrXVI 431353 431543 HC_gene_9310_tx_1 7 - 431353 431543 . 1 191 0 -chrXVI 432543 434205 HC_gene_8919_tx_1 474 + 432543 434205 . 1 1663 0 -chrXVI 432543 434205 HC_gene_8919_tx_2 1 + 432543 434205 . 2 1479,58 0,1605 -chrXVI 432543 434205 HC_gene_8919_tx_3 1 + 432543 434205 . 2 1015,569 0,1094 -chrXVI 432543 434205 HC_gene_8919_tx_4 1 + 432543 434205 . 2 481,558 0,1105 -chrXVI 432543 434205 HC_gene_8919_tx_5 1 + 432543 434205 . 2 1276,275 0,1388 -chrXVI 432543 434205 HC_gene_8919_tx_6 1 + 432543 434205 . 2 736,886 0,777 -chrXVI 432543 434205 HC_gene_8919_tx_7 1 + 432543 434205 . 2 286,661 0,1002 -chrXVI 432543 434205 HC_gene_8919_tx_8 1 + 432543 434205 . 2 898,631 0,1032 -chrXVI 432543 434205 HC_gene_8919_tx_9 1 + 432543 434205 . 2 1224,338 0,1325 -chrXVI 432543 434205 HC_gene_8919_tx_10 1 + 432543 434205 . 2 541,963 0,700 -chrXVI 432561 434205 HC_gene_8919_tx_11 1 + 432561 434205 . 2 278,458 0,1187 -chrXVI 432561 434205 HC_gene_8919_tx_12 1 + 432561 434205 . 2 152,1276 0,369 -chrXVI 432705 434205 HC_gene_8919_tx_13 37 + 432705 434205 . 1 1501 0 -chrXVI 432756 434205 HC_gene_8919_tx_14 18 + 432756 434205 . 1 1450 0 -chrXVI 432831 434205 HC_gene_8919_tx_15 19 + 432831 434205 . 1 1375 0 -chrXVI 432959 434205 HC_gene_8919_tx_16 19 + 432959 434205 . 1 1247 0 -chrXVI 433044 434205 HC_gene_8919_tx_17 99 + 433044 434205 . 1 1162 0 -chrXVI 433228 434205 HC_gene_8919_tx_18 24 + 433228 434205 . 1 978 0 -chrXVI 433410 434205 HC_gene_8919_tx_19 56 + 433410 434205 . 1 796 0 -chrXVI 433695 434205 HC_gene_8919_tx_20 158 + 433695 434205 . 1 511 0 -chrXVI 433695 434205 HC_gene_8919_tx_21 1 + 433695 434205 . 2 154,288 0,223 -chrXVI 434046 434323 HC_gene_9311_tx_1 1 - 434046 434323 . 1 278 0 -chrXVI 434139 434323 HC_gene_9311_tx_2 5 - 434139 434323 . 1 185 0 -chrXVI 434283 435794 HC_gene_8920_tx_1 3 + 434283 435794 . 1 1512 0 -chrXVI 434472 435794 HC_gene_8920_tx_2 5 + 434472 435794 . 1 1323 0 -chrXVI 435108 435739 LC_gene_9312_tx_1 1 - 435108 435739 . 1 632 0 -chrXVI 435807 435955 MC_gene_9313_tx_1 1 - 435807 435955 . 1 149 0 -chrXVI 436234 436709 MC_gene_8921_tx_1 1 + 436234 436709 . 1 476 0 -chrXVI 436856 438079 HC_gene_9314_tx_1 1 - 436856 438079 . 1 1224 0 -chrXVI 442653 443334 MC_gene_8922_tx_1 1 + 442653 443334 . 1 682 0 -chrXVI 442787 443538 MC_gene_8923_tx_1 1 + 442787 443538 . 1 752 0 -chrXVI 443256 443788 HC_gene_9315_tx_1 3 - 443256 443788 . 1 533 0 -chrXVI 443590 443806 HC_gene_9316_tx_1 1 - 443590 443806 . 1 217 0 -chrXVI 443762 444360 HC_gene_8924_tx_1 2 + 443762 444360 . 1 599 0 -chrXVI 443849 444247 HC_gene_9317_tx_1 4 - 443849 444247 . 1 399 0 -chrXVI 443964 444360 HC_gene_8924_tx_2 6 + 443964 444360 . 1 397 0 -chrXVI 444518 445208 HC_gene_8925_tx_1 125 + 444518 445208 . 1 691 0 -chrXVI 444630 445208 HC_gene_8925_tx_2 10 + 444630 445208 . 1 579 0 -chrXVI 444799 445208 HC_gene_8925_tx_3 27 + 444799 445208 . 1 410 0 -chrXVI 445011 445410 HC_gene_9318_tx_1 3 - 445011 445410 . 1 400 0 -chrXVI 445011 445602 HC_gene_9318_tx_2 1 - 445011 445602 . 1 592 0 -chrXVI 445152 445410 HC_gene_9318_tx_3 3 - 445152 445410 . 1 259 0 -chrXVI 445152 445602 HC_gene_9318_tx_4 9 - 445152 445602 . 1 451 0 -chrXVI 445372 445760 LC_gene_8926_tx_1 1 + 445372 445760 . 1 389 0 -chrXVI 445630 450554 HC_gene_9319_tx_1 1 - 445630 450554 . 1 4925 0 -chrXVI 445756 446508 HC_gene_9319_tx_4 1 - 445756 446508 . 1 753 0 -chrXVI 445756 450554 HC_gene_9319_tx_2 1 - 445756 450554 . 2 935,3806 0,993 -chrXVI 445756 450554 HC_gene_9319_tx_3 1 - 445756 450554 . 1 4799 0 -chrXVI 451170 451561 LC_gene_8927_tx_1 1 + 451170 451561 . 1 392 0 -chrXVI 451461 452836 HC_gene_9320_tx_1 10 - 451461 452836 . 1 1376 0 -chrXVI 451461 452836 HC_gene_9320_tx_2 1 - 451461 452836 . 2 762,562 0,814 -chrXVI 451461 453166 HC_gene_9320_tx_3 83 - 451461 453166 . 1 1706 0 -chrXVI 451461 453166 HC_gene_9320_tx_4 1 - 451461 453166 . 2 894,69 0,1637 -chrXVI 451461 453166 HC_gene_9320_tx_5 1 - 451461 453166 . 3 230,1068,187 0,271,1519 -chrXVI 451461 453166 HC_gene_9320_tx_6 1 - 451461 453166 . 2 370,1272 0,434 -chrXVI 451461 453166 HC_gene_9320_tx_7 1 - 451461 453166 . 2 55,1586 0,120 -chrXVI 451461 453166 HC_gene_9320_tx_8 1 - 451461 453166 . 2 62,1527 0,179 -chrXVI 451461 453166 HC_gene_9320_tx_9 1 - 451461 453166 . 2 62,1564 0,142 -chrXVI 451461 453166 HC_gene_9320_tx_10 1 - 451461 453166 . 2 62,1586 0,120 -chrXVI 451529 453166 HC_gene_9320_tx_11 18 - 451529 453166 . 1 1638 0 -chrXVI 451529 453166 HC_gene_9320_tx_12 1 - 451529 453166 . 2 597,981 0,657 -chrXVI 451578 452156 MC_gene_8928_tx_1 1 + 451578 452156 . 1 579 0 -chrXVI 453208 454481 HC_gene_9321_tx_1 1 - 453208 454481 . 1 1274 0 -chrXVI 453208 455001 HC_gene_9321_tx_3 3 - 453208 455001 . 1 1794 0 -chrXVI 453305 454481 HC_gene_9321_tx_2 2 - 453305 454481 . 1 1177 0 -chrXVI 453305 455001 HC_gene_9321_tx_4 3 - 453305 455001 . 1 1697 0 -chrXVI 453305 455001 HC_gene_9321_tx_5 1 - 453305 455001 . 2 690,940 0,757 -chrXVI 453402 454024 HC_gene_8929_tx_1 7 + 453402 454024 . 1 623 0 -chrXVI 453402 454155 HC_gene_8929_tx_2 9 + 453402 454155 . 1 754 0 -chrXVI 453416 454024 HC_gene_8929_tx_3 1 + 453416 454024 . 1 609 0 -chrXVI 453418 454024 HC_gene_8929_tx_4 1 + 453418 454024 . 1 607 0 -chrXVI 453641 454155 HC_gene_8929_tx_5 3 + 453641 454155 . 1 515 0 -chrXVI 453905 455001 HC_gene_9321_tx_6 1 - 453905 455001 . 1 1097 0 -chrXVI 453908 455001 HC_gene_9321_tx_7 1 - 453908 455001 . 1 1094 0 -chrXVI 453911 455001 HC_gene_9321_tx_8 1 - 453911 455001 . 1 1091 0 -chrXVI 453914 454481 HC_gene_9321_tx_10 1 - 453914 454481 . 1 568 0 -chrXVI 453914 455001 HC_gene_9321_tx_9 3 - 453914 455001 . 1 1088 0 -chrXVI 454419 455433 LC_gene_8930_tx_1 1 + 454419 455433 . 1 1015 0 -chrXVI 455365 456027 MC_gene_9322_tx_1 1 - 455365 456027 . 1 663 0 -chrXVI 455650 456541 MC_gene_9323_tx_1 1 - 455650 456541 . 1 892 0 -chrXVI 455650 456635 MC_gene_9323_tx_2 1 - 455650 456635 . 1 986 0 -chrXVI 455664 456483 HC_gene_8931_tx_1 1 + 455664 456483 . 1 820 0 -chrXVI 456258 457032 HC_gene_8932_tx_1 2 + 456258 457032 . 1 775 0 -chrXVI 457017 457757 HC_gene_9324_tx_1 19 - 457017 457757 . 1 741 0 -chrXVI 457017 458047 HC_gene_9324_tx_2 10 - 457017 458047 . 1 1031 0 -chrXVI 457017 458230 HC_gene_9324_tx_3 10 - 457017 458230 . 1 1214 0 -chrXVI 457017 458539 HC_gene_9324_tx_4 1 - 457017 458539 . 2 908,301 0,1222 -chrXVI 457017 458539 HC_gene_9324_tx_5 67 - 457017 458539 . 1 1523 0 -chrXVI 457017 458539 HC_gene_9324_tx_6 1 - 457017 458539 . 2 1216,194 0,1329 -chrXVI 457017 458539 HC_gene_9324_tx_7 1 - 457017 458539 . 2 492,958 0,565 -chrXVI 457017 458539 HC_gene_9324_tx_8 1 - 457017 458539 . 2 619,856 0,667 -chrXVI 458741 459542 HC_gene_8933_tx_1 11 + 458741 459542 . 1 802 0 -chrXVI 458741 459744 HC_gene_8933_tx_2 26 + 458741 459744 . 1 1004 0 -chrXVI 458741 459917 HC_gene_8933_tx_3 6 + 458741 459917 . 1 1177 0 -chrXVI 459141 459804 MC_gene_9325_tx_1 1 - 459141 459804 . 1 664 0 -chrXVI 459956 460705 HC_gene_8934_tx_1 37 + 459956 460705 . 1 750 0 -chrXVI 460183 460705 HC_gene_8934_tx_2 6 + 460183 460705 . 1 523 0 -chrXVI 460614 461527 HC_gene_9326_tx_1 21 - 460614 461527 . 1 914 0 -chrXVI 460614 462154 HC_gene_9326_tx_2 62 - 460614 462154 . 1 1541 0 -chrXVI 460614 462154 HC_gene_9326_tx_3 1 - 460614 462154 . 2 587,816 0,725 -chrXVI 460614 462154 HC_gene_9326_tx_4 1 - 460614 462154 . 2 750,684 0,857 -chrXVI 460614 462154 HC_gene_9326_tx_5 1 - 460614 462154 . 2 658,800 0,741 -chrXVI 460614 462154 HC_gene_9326_tx_6 1 - 460614 462154 . 2 552,921 0,620 -chrXVI 462307 462638 HC_gene_9327_tx_1 10 - 462307 462638 . 1 332 0 -chrXVI 462307 462713 HC_gene_9327_tx_2 13 - 462307 462713 . 1 407 0 -chrXVI 462307 463045 HC_gene_9327_tx_3 19 - 462307 463045 . 1 739 0 -chrXVI 462307 463045 HC_gene_9327_tx_4 1 - 462307 463045 . 2 85,582 0,157 -chrXVI 462307 463545 HC_gene_9327_tx_5 7 - 462307 463545 . 1 1239 0 -chrXVI 462307 463910 HC_gene_9327_tx_6 54 - 462307 463910 . 1 1604 0 -chrXVI 462307 463910 HC_gene_9327_tx_7 1 - 462307 463910 . 2 908,144 0,1460 -chrXVI 462307 463910 HC_gene_9327_tx_8 1 - 462307 463910 . 2 300,1234 0,370 -chrXVI 462307 464022 HC_gene_9327_tx_9 2 - 462307 464022 . 1 1716 0 -chrXVI 462307 464123 HC_gene_9327_tx_10 5 - 462307 464123 . 1 1817 0 -chrXVI 462401 462639 MC_gene_8935_tx_1 1 + 462401 462639 . 1 239 0 -chrXVI 463200 463910 HC_gene_9327_tx_11 4 - 463200 463910 . 1 711 0 -chrXVI 463202 463910 HC_gene_9327_tx_12 4 - 463202 463910 . 1 709 0 -chrXVI 463203 463910 HC_gene_9327_tx_13 4 - 463203 463910 . 1 708 0 -chrXVI 463272 463910 HC_gene_9327_tx_14 2 - 463272 463910 . 1 639 0 -chrXVI 463272 463910 HC_gene_9327_tx_15 1 - 463272 463910 . 2 488,99 0,540 -chrXVI 463272 464123 HC_gene_9327_tx_18 1 - 463272 464123 . 1 852 0 -chrXVI 463288 463910 HC_gene_9327_tx_16 1 - 463288 463910 . 1 623 0 -chrXVI 463288 464123 HC_gene_9327_tx_19 1 - 463288 464123 . 1 836 0 -chrXVI 463297 463910 HC_gene_9327_tx_17 1 - 463297 463910 . 1 614 0 -chrXVI 464364 465795 HC_gene_8936_tx_1 274 + 464364 465795 . 1 1432 0 -chrXVI 464364 465795 HC_gene_8936_tx_2 1 + 464364 465795 . 2 893,463 0,969 -chrXVI 464364 465795 HC_gene_8936_tx_3 1 + 464364 465795 . 2 931,457 0,975 -chrXVI 464364 465795 HC_gene_8936_tx_4 1 + 464364 465795 . 2 998,364 0,1068 -chrXVI 464364 465863 HC_gene_8936_tx_5 3 + 464364 465863 . 1 1500 0 -chrXVI 464595 465795 HC_gene_8936_tx_6 17 + 464595 465795 . 1 1201 0 -chrXVI 464595 465863 HC_gene_8936_tx_7 1 + 464595 465863 . 1 1269 0 -chrXVI 464759 465795 HC_gene_8936_tx_8 35 + 464759 465795 . 1 1037 0 -chrXVI 464759 465795 HC_gene_8936_tx_9 1 + 464759 465795 . 2 273,601 0,436 -chrXVI 465113 465795 HC_gene_8936_tx_10 42 + 465113 465795 . 1 683 0 -chrXVI 465216 465795 HC_gene_8936_tx_11 49 + 465216 465795 . 1 580 0 -chrXVI 465216 465863 HC_gene_8936_tx_12 1 + 465216 465863 . 1 648 0 -chrXVI 465470 465795 HC_gene_8936_tx_13 63 + 465470 465795 . 1 326 0 -chrXVI 465470 465863 HC_gene_8936_tx_14 1 + 465470 465863 . 1 394 0 -chrXVI 465660 466966 HC_gene_9328_tx_1 1 - 465660 466966 . 1 1307 0 -chrXVI 465875 466621 HC_gene_8937_tx_1 118 + 465875 466621 . 1 747 0 -chrXVI 466332 466966 HC_gene_9328_tx_2 5 - 466332 466966 . 1 635 0 -chrXVI 466415 466966 HC_gene_9328_tx_3 1 - 466415 466966 . 1 552 0 -chrXVI 466418 466966 HC_gene_9328_tx_4 2 - 466418 466966 . 1 549 0 -chrXVI 466419 466966 HC_gene_9328_tx_5 7 - 466419 466966 . 1 548 0 -chrXVI 466486 466621 HC_gene_8937_tx_2 2 + 466486 466621 . 1 136 0 -chrXVI 466488 466966 HC_gene_9328_tx_6 22 - 466488 466966 . 1 479 0 -chrXVI 466583 466966 HC_gene_9328_tx_7 1 - 466583 466966 . 1 384 0 -chrXVI 467156 469817 HC_gene_8938_tx_1 6 + 467156 469817 . 1 2662 0 -chrXVI 467702 469639 LC_gene_9329_tx_1 1 - 467702 469639 . 1 1938 0 -chrXVI 469881 472102 HC_gene_8939_tx_1 1 + 469881 472102 . 2 1292,776 0,1446 -chrXVI 469881 472102 HC_gene_8939_tx_2 1 + 469881 472102 . 2 956,1155 0,1067 -chrXVI 469881 472102 HC_gene_8939_tx_3 45 + 469881 472102 . 1 2222 0 -chrXVI 469881 472102 HC_gene_8939_tx_4 1 + 469881 472102 . 2 484,1593 0,629 -chrXVI 469881 472102 HC_gene_8939_tx_5 1 + 469881 472102 . 2 1434,735 0,1487 -chrXVI 469881 472102 HC_gene_8939_tx_6 1 + 469881 472102 . 2 1906,252 0,1970 -chrXVI 469881 472322 HC_gene_8939_tx_7 5 + 469881 472322 . 1 2442 0 -chrXVI 470467 472102 HC_gene_8939_tx_8 10 + 470467 472102 . 1 1636 0 -chrXVI 470467 472102 HC_gene_8939_tx_9 1 + 470467 472102 . 2 976,579 0,1057 -chrXVI 470467 472322 HC_gene_8939_tx_10 2 + 470467 472322 . 1 1856 0 -chrXVI 470624 472102 HC_gene_8939_tx_11 20 + 470624 472102 . 1 1479 0 -chrXVI 470624 472102 HC_gene_8939_tx_12 1 + 470624 472102 . 2 42,1017 0,462 -chrXVI 470624 472102 HC_gene_8939_tx_13 1 + 470624 472102 . 2 905,499 0,980 -chrXVI 471376 472102 HC_gene_8939_tx_14 32 + 471376 472102 . 1 727 0 -chrXVI 471653 472102 HC_gene_8939_tx_15 28 + 471653 472102 . 1 450 0 -chrXVI 471653 472322 HC_gene_8939_tx_16 3 + 471653 472322 . 1 670 0 -chrXVI 472226 472682 HC_gene_9330_tx_1 1 - 472226 472682 . 1 457 0 -chrXVI 472238 472987 HC_gene_8940_tx_1 2 + 472238 472987 . 1 750 0 -chrXVI 472930 474962 HC_gene_9331_tx_1 30 - 472930 474962 . 1 2033 0 -chrXVI 472930 474962 HC_gene_9331_tx_2 1 - 472930 474962 . 2 507,1277 0,756 -chrXVI 472930 474962 HC_gene_9331_tx_3 1 - 472930 474962 . 2 852,1111 0,922 -chrXVI 474882 475748 HC_gene_9332_tx_1 6 - 474882 475748 . 1 867 0 -chrXVI 475169 476907 LC_gene_8941_tx_1 1 + 475169 476907 . 1 1739 0 -chrXVI 475919 478990 HC_gene_9333_tx_1 2 - 475919 478990 . 1 3072 0 -chrXVI 479214 480227 HC_gene_8942_tx_1 12 + 479214 480227 . 1 1014 0 -chrXVI 479214 480311 HC_gene_8942_tx_2 37 + 479214 480311 . 1 1098 0 -chrXVI 479931 480227 HC_gene_8942_tx_3 4 + 479931 480227 . 1 297 0 -chrXVI 479931 480311 HC_gene_8942_tx_4 4 + 479931 480311 . 1 381 0 -chrXVI 480497 481181 HC_gene_8943_tx_1 90 + 480497 481181 . 1 685 0 -chrXVI 480766 481181 HC_gene_8943_tx_2 17 + 480766 481181 . 1 416 0 -chrXVI 481365 481697 HC_gene_9334_tx_1 207 - 481365 481697 . 1 333 0 -chrXVI 481365 481932 HC_gene_9334_tx_2 1684 - 481365 481932 . 1 568 0 -chrXVI 481479 481884 LC_gene_8944_tx_1 1 + 481479 481884 . 1 406 0 -chrXVI 482221 482884 MC_gene_9335_tx_1 1 - 482221 482884 . 1 664 0 -chrXVI 482260 482636 HC_gene_8945_tx_1 1 + 482260 482636 . 1 377 0 -chrXVI 482260 482788 HC_gene_8945_tx_2 6 + 482260 482788 . 1 529 0 -chrXVI 482456 483434 MC_gene_9336_tx_1 1 - 482456 483434 . 1 979 0 -chrXVI 482488 482788 HC_gene_8945_tx_3 6 + 482488 482788 . 1 301 0 -chrXVI 483062 486216 MC_gene_9337_tx_1 1 - 483062 486216 . 1 3155 0 -chrXVI 483895 485561 LC_gene_8946_tx_1 1 + 483895 485561 . 1 1667 0 -chrXVI 485798 486243 HC_gene_8947_tx_1 1 + 485798 486243 . 1 446 0 -chrXVI 486377 487343 HC_gene_8948_tx_1 1 + 486377 487343 . 2 74,527 0,440 -chrXVI 486377 487343 HC_gene_8948_tx_2 38 + 486377 487343 . 1 967 0 -chrXVI 486515 487138 LC_gene_9338_tx_1 1 - 486515 487138 . 1 624 0 -chrXVI 486611 487343 HC_gene_8948_tx_3 8 + 486611 487343 . 1 733 0 -chrXVI 487225 488255 LC_gene_9339_tx_1 1 - 487225 488255 . 1 1031 0 -chrXVI 488485 490095 LC_gene_8949_tx_1 1 + 488485 490095 . 1 1611 0 -chrXVI 488572 489645 HC_gene_9340_tx_1 13 - 488572 489645 . 1 1074 0 -chrXVI 488572 491292 HC_gene_9340_tx_3 1 - 488572 491292 . 2 698,1781 0,940 -chrXVI 488572 491292 HC_gene_9340_tx_4 1 - 488572 491292 . 1 2721 0 -chrXVI 488572 491566 HC_gene_9340_tx_5 16 - 488572 491566 . 1 2995 0 -chrXVI 488572 491566 HC_gene_9340_tx_6 1 - 488572 491566 . 2 2387,348 0,2647 -chrXVI 488572 491566 HC_gene_9340_tx_7 1 - 488572 491566 . 2 954,1634 0,1361 -chrXVI 488733 489645 HC_gene_9340_tx_2 4 - 488733 489645 . 1 913 0 -chrXVI 488733 491292 HC_gene_9340_tx_8 2 - 488733 491292 . 1 2560 0 -chrXVI 488733 491566 HC_gene_9340_tx_9 10 - 488733 491566 . 1 2834 0 -chrXVI 488733 491566 HC_gene_9340_tx_10 1 - 488733 491566 . 2 290,2463 0,371 -chrXVI 488733 491566 HC_gene_9340_tx_11 1 - 488733 491566 . 2 1389,545 0,2289 -chrXVI 491397 493069 HC_gene_9341_tx_1 1 - 491397 493069 . 1 1673 0 -chrXVI 491941 492625 HC_gene_9341_tx_2 12 - 491941 492625 . 1 685 0 -chrXVI 491941 492824 HC_gene_9341_tx_3 10 - 491941 492824 . 1 884 0 -chrXVI 491941 493069 HC_gene_9341_tx_4 31 - 491941 493069 . 1 1129 0 -chrXVI 491941 493069 HC_gene_9341_tx_5 16 - 491941 493069 . 2 978,49 0,1080 -chrXVI 491941 493069 HC_gene_9341_tx_6 2 - 491941 493069 . 2 968,49 0,1080 -chrXVI 491941 493333 HC_gene_9341_tx_7 1 - 491941 493333 . 2 968,317 0,1076 -chrXVI 491941 493333 HC_gene_9341_tx_8 3 - 491941 493333 . 2 978,313 0,1080 -chrXVI 491941 493333 HC_gene_9341_tx_9 2 - 491941 493333 . 1 1393 0 -chrXVI 491987 493050 HC_gene_8950_tx_1 2 + 491987 493050 . 1 1064 0 -chrXVI 493482 495376 HC_gene_8951_tx_1 15 + 493482 495376 . 1 1895 0 -chrXVI 493482 495376 HC_gene_8951_tx_2 1 + 493482 495376 . 2 1063,769 0,1126 -chrXVI 493482 495376 HC_gene_8951_tx_3 1 + 493482 495376 . 2 1285,534 0,1361 -chrXVI 495486 497779 HC_gene_8952_tx_1 8 + 495486 497779 . 1 2294 0 -chrXVI 495719 497674 LC_gene_9342_tx_1 1 - 495719 497674 . 1 1956 0 -chrXVI 497966 498607 MC_gene_9343_tx_1 1 - 497966 498607 . 1 642 0 -chrXVI 498031 499393 HC_gene_8953_tx_1 251 + 498031 499393 . 1 1363 0 -chrXVI 498137 499393 HC_gene_8953_tx_2 20 + 498137 499393 . 1 1257 0 -chrXVI 498289 499393 HC_gene_8953_tx_3 28 + 498289 499393 . 1 1105 0 -chrXVI 498498 499393 HC_gene_8953_tx_4 33 + 498498 499393 . 1 896 0 -chrXVI 498721 499393 HC_gene_8953_tx_5 44 + 498721 499393 . 1 673 0 -chrXVI 498853 499393 HC_gene_8953_tx_6 45 + 498853 499393 . 1 541 0 -chrXVI 498946 499393 HC_gene_8953_tx_7 26 + 498946 499393 . 1 448 0 -chrXVI 499005 499393 HC_gene_8953_tx_8 40 + 499005 499393 . 1 389 0 -chrXVI 499258 500218 MC_gene_9344_tx_1 1 - 499258 500218 . 2 762,139 0,822 -chrXVI 500420 501082 HC_gene_9345_tx_1 17 - 500420 501082 . 1 663 0 -chrXVI 500420 501520 HC_gene_9345_tx_2 5 - 500420 501520 . 1 1101 0 -chrXVI 500420 502250 HC_gene_9345_tx_3 44 - 500420 502250 . 1 1831 0 -chrXVI 500527 501026 LC_gene_8954_tx_1 1 + 500527 501026 . 1 500 0 -chrXVI 502256 503247 LC_gene_9346_tx_1 1 - 502256 503247 . 1 992 0 -chrXVI 503210 504386 HC_gene_8955_tx_1 13 + 503210 504386 . 1 1177 0 -chrXVI 503352 504386 HC_gene_8955_tx_2 7 + 503352 504386 . 1 1035 0 -chrXVI 503463 504386 HC_gene_8955_tx_3 42 + 503463 504386 . 1 924 0 -chrXVI 503463 504386 HC_gene_8955_tx_4 1 + 503463 504386 . 2 46,472 0,452 -chrXVI 503813 504386 HC_gene_8955_tx_5 3 + 503813 504386 . 1 574 0 -chrXVI 504202 506161 HC_gene_9347_tx_1 1 - 504202 506161 . 1 1960 0 -chrXVI 504202 506440 HC_gene_9347_tx_2 1 - 504202 506440 . 2 1138,1019 0,1220 -chrXVI 504202 506440 HC_gene_9347_tx_3 20 - 504202 506440 . 1 2239 0 -chrXVI 504202 506440 HC_gene_9347_tx_4 1 - 504202 506440 . 2 919,1219 0,1020 -chrXVI 504202 506440 HC_gene_9347_tx_5 1 - 504202 506440 . 2 1425,257 0,1982 -chrXVI 504202 506440 HC_gene_9347_tx_6 1 - 504202 506440 . 2 803,982 0,1257 -chrXVI 506615 507500 HC_gene_8956_tx_1 1 + 506615 507500 . 2 731,49 0,837 -chrXVI 506615 507500 HC_gene_8956_tx_2 1 + 506615 507500 . 1 886 0 -chrXVI 508172 510212 HC_gene_8957_tx_1 2 + 508172 510212 . 1 2041 0 -chrXVI 508491 510212 HC_gene_8957_tx_2 7 + 508491 510212 . 1 1722 0 -chrXVI 508491 510607 HC_gene_8957_tx_3 2 + 508491 510607 . 1 2117 0 -chrXVI 509253 510212 HC_gene_8957_tx_4 4 + 509253 510212 . 1 960 0 -chrXVI 510004 510637 MC_gene_9348_tx_1 1 - 510004 510637 . 1 634 0 -chrXVI 511852 512335 HC_gene_8958_tx_1 16 + 511852 512335 . 1 484 0 -chrXVI 512256 513474 HC_gene_9349_tx_1 2 - 512256 513474 . 1 1219 0 -chrXVI 512256 513645 HC_gene_9349_tx_2 3 - 512256 513645 . 1 1390 0 -chrXVI 512256 514288 HC_gene_9349_tx_3 18 - 512256 514288 . 1 2033 0 -chrXVI 512256 514288 HC_gene_9349_tx_4 1 - 512256 514288 . 2 978,947 0,1086 -chrXVI 512256 514288 HC_gene_9349_tx_5 1 - 512256 514288 . 3 47,858,987 0,127,1046 -chrXVI 512857 513645 HC_gene_9349_tx_6 1 - 512857 513645 . 1 789 0 -chrXVI 514430 515330 HC_gene_9350_tx_1 2 - 514430 515330 . 1 901 0 -chrXVI 514430 515427 HC_gene_9350_tx_2 2 - 514430 515427 . 1 998 0 -chrXVI 514430 515540 HC_gene_9350_tx_3 3 - 514430 515540 . 1 1111 0 -chrXVI 514430 516037 HC_gene_9350_tx_4 1 - 514430 516037 . 1 1608 0 -chrXVI 514430 516361 HC_gene_9350_tx_5 1 - 514430 516361 . 1 1932 0 -chrXVI 514541 515763 LC_gene_8959_tx_1 1 + 514541 515763 . 1 1223 0 -chrXVI 516423 517154 HC_gene_9351_tx_1 2 - 516423 517154 . 1 732 0 -chrXVI 517542 520225 HC_gene_9352_tx_1 1 - 517542 520225 . 1 2684 0 -chrXVI 517635 519916 HC_gene_8960_tx_1 4 + 517635 519916 . 1 2282 0 -chrXVI 517635 519916 HC_gene_8960_tx_2 1 + 517635 519916 . 2 1323,898 0,1384 -chrXVI 517767 519916 HC_gene_8960_tx_3 1 + 517767 519916 . 1 2150 0 -chrXVI 518066 520225 HC_gene_9352_tx_2 2 - 518066 520225 . 1 2160 0 -chrXVI 520703 521074 HC_gene_8961_tx_1 9 + 520703 521074 . 1 372 0 -chrXVI 520703 525083 HC_gene_8961_tx_2 2 + 520703 525083 . 1 4381 0 -chrXVI 520703 525083 HC_gene_8961_tx_3 1 + 520703 525083 . 2 24,4285 0,96 -chrXVI 520850 525083 HC_gene_8961_tx_4 2 + 520850 525083 . 1 4234 0 -chrXVI 521169 522119 LC_gene_9353_tx_1 1 - 521169 522119 . 1 951 0 -chrXVI 521401 525083 HC_gene_8961_tx_5 1 + 521401 525083 . 1 3683 0 -chrXVI 524991 525479 MC_gene_9354_tx_1 1 - 524991 525479 . 1 489 0 -chrXVI 525485 525990 HC_gene_9355_tx_1 18 - 525485 525990 . 1 506 0 -chrXVI 525485 526520 HC_gene_9355_tx_2 1 - 525485 526520 . 1 1036 0 -chrXVI 525485 526541 HC_gene_9355_tx_3 12 - 525485 526541 . 1 1057 0 -chrXVI 525485 526541 HC_gene_9355_tx_4 1 - 525485 526541 . 2 377,241 0,816 -chrXVI 525485 526551 HC_gene_9355_tx_5 1 - 525485 526551 . 1 1067 0 -chrXVI 525485 526625 HC_gene_9355_tx_6 3 - 525485 526625 . 1 1141 0 -chrXVI 525485 526759 HC_gene_9355_tx_7 21 - 525485 526759 . 1 1275 0 -chrXVI 525485 526919 HC_gene_9355_tx_8 1 - 525485 526919 . 1 1435 0 -chrXVI 525485 526934 HC_gene_9355_tx_9 21 - 525485 526934 . 1 1450 0 -chrXVI 525485 526934 HC_gene_9355_tx_10 1 - 525485 526934 . 2 257,866 0,584 -chrXVI 525488 525769 LC_gene_8962_tx_1 1 + 525488 525769 . 1 282 0 -chrXVI 525613 525990 HC_gene_9355_tx_16 7 - 525613 525990 . 1 378 0 -chrXVI 525613 526541 HC_gene_9355_tx_11 4 - 525613 526541 . 1 929 0 -chrXVI 525613 526625 HC_gene_9355_tx_12 2 - 525613 526625 . 1 1013 0 -chrXVI 525613 526759 HC_gene_9355_tx_13 7 - 525613 526759 . 1 1147 0 -chrXVI 525613 526759 HC_gene_9355_tx_14 1 - 525613 526759 . 2 192,629 0,518 -chrXVI 525613 526934 HC_gene_9355_tx_15 11 - 525613 526934 . 1 1322 0 -chrXVI 526404 527468 MC_gene_8963_tx_1 1 + 526404 527468 . 1 1065 0 -chrXVI 526858 527476 MC_gene_8964_tx_1 1 + 526858 527476 . 1 619 0 -chrXVI 527517 528948 HC_gene_8965_tx_1 26 + 527517 528948 . 1 1432 0 -chrXVI 527601 528948 HC_gene_8965_tx_2 7 + 527601 528948 . 1 1348 0 -chrXVI 527795 528948 HC_gene_8965_tx_3 7 + 527795 528948 . 1 1154 0 -chrXVI 527846 528948 HC_gene_8965_tx_4 9 + 527846 528948 . 1 1103 0 -chrXVI 528068 528948 HC_gene_8965_tx_5 9 + 528068 528948 . 1 881 0 -chrXVI 528174 528948 HC_gene_8965_tx_6 11 + 528174 528948 . 1 775 0 -chrXVI 528242 528948 HC_gene_8965_tx_7 2 + 528242 528948 . 1 707 0 -chrXVI 528358 528948 HC_gene_8965_tx_8 8 + 528358 528948 . 1 591 0 -chrXVI 528661 529050 HC_gene_9356_tx_1 1 - 528661 529050 . 1 390 0 -chrXVI 528661 529178 HC_gene_9356_tx_2 4 - 528661 529178 . 1 518 0 -chrXVI 528661 529370 HC_gene_9356_tx_3 28 - 528661 529370 . 1 710 0 -chrXVI 528835 529050 HC_gene_9356_tx_4 6 - 528835 529050 . 1 216 0 -chrXVI 528835 529178 HC_gene_9356_tx_5 22 - 528835 529178 . 1 344 0 -chrXVI 528835 529370 HC_gene_9356_tx_6 311 - 528835 529370 . 1 536 0 -chrXVI 528835 529370 HC_gene_9356_tx_7 1 - 528835 529370 . 2 368,92 0,444 -chrXVI 528835 529370 HC_gene_9356_tx_8 1 - 528835 529370 . 2 211,279 0,257 -chrXVI 528835 529370 HC_gene_9356_tx_9 1 - 528835 529370 . 2 373,105 0,431 -chrXVI 528835 529370 HC_gene_9356_tx_10 1 - 528835 529370 . 2 398,96 0,440 -chrXVI 528835 529370 HC_gene_9356_tx_11 1 - 528835 529370 . 2 335,32 0,504 -chrXVI 529602 533538 HC_gene_8966_tx_1 9 + 529602 533538 . 1 3937 0 -chrXVI 530923 533538 HC_gene_8966_tx_2 2 + 530923 533538 . 1 2616 0 -chrXVI 531252 533538 HC_gene_8966_tx_3 2 + 531252 533538 . 1 2287 0 -chrXVI 532611 533538 HC_gene_8966_tx_4 10 + 532611 533538 . 1 928 0 -chrXVI 532965 533538 HC_gene_8966_tx_5 21 + 532965 533538 . 1 574 0 -chrXVI 533138 533538 HC_gene_8966_tx_6 26 + 533138 533538 . 1 401 0 -chrXVI 533515 534088 HC_gene_9357_tx_1 13 - 533515 534088 . 1 574 0 -chrXVI 533515 534353 HC_gene_9357_tx_2 2 - 533515 534353 . 1 839 0 -chrXVI 533515 534738 HC_gene_9357_tx_3 30 - 533515 534738 . 1 1224 0 -chrXVI 534952 535735 HC_gene_8967_tx_1 296 + 534952 535735 . 1 784 0 -chrXVI 535209 535735 HC_gene_8967_tx_2 30 + 535209 535735 . 1 527 0 -chrXVI 535313 535735 HC_gene_8967_tx_3 36 + 535313 535735 . 1 423 0 -chrXVI 535610 536001 HC_gene_9358_tx_1 24 - 535610 536001 . 1 392 0 -chrXVI 535610 536145 HC_gene_9358_tx_2 16 - 535610 536145 . 1 536 0 -chrXVI 535610 536344 HC_gene_9358_tx_3 19 - 535610 536344 . 1 735 0 -chrXVI 535610 536650 HC_gene_9358_tx_4 9 - 535610 536650 . 1 1041 0 -chrXVI 535610 536838 HC_gene_9358_tx_5 9 - 535610 536838 . 1 1229 0 -chrXVI 535610 536838 HC_gene_9358_tx_6 1 - 535610 536838 . 2 438,649 0,580 -chrXVI 535610 537165 HC_gene_9358_tx_7 9 - 535610 537165 . 1 1556 0 -chrXVI 535610 537165 HC_gene_9358_tx_8 1 - 535610 537165 . 2 977,144 0,1412 -chrXVI 535610 537981 HC_gene_9358_tx_9 7 - 535610 537981 . 1 2372 0 -chrXVI 535610 537981 HC_gene_9358_tx_10 1 - 535610 537981 . 3 1118,738,361 0,1181,2011 -chrXVI 535610 538310 HC_gene_9358_tx_11 3 - 535610 538310 . 1 2701 0 -chrXVI 535610 538960 HC_gene_9358_tx_12 12 - 535610 538960 . 1 3351 0 -chrXVI 535610 538960 HC_gene_9358_tx_13 1 - 535610 538960 . 2 857,1881 0,1470 -chrXVI 539138 542049 HC_gene_8968_tx_1 4 + 539138 542049 . 1 2912 0 -chrXVI 539138 542049 HC_gene_8968_tx_2 1 + 539138 542049 . 3 50,522,1370 0,647,1542 -chrXVI 541981 542966 HC_gene_9359_tx_1 2 - 541981 542966 . 1 986 0 -chrXVI 541981 543895 HC_gene_9359_tx_2 9 - 541981 543895 . 1 1915 0 -chrXVI 541981 543895 HC_gene_9359_tx_3 1 - 541981 543895 . 2 769,1088 0,827 -chrXVI 541981 543895 HC_gene_9359_tx_4 1 - 541981 543895 . 2 778,1072 0,843 -chrXVI 544056 544330 HC_gene_8969_tx_1 8 + 544056 544330 . 1 275 0 -chrXVI 544603 548208 HC_gene_8970_tx_1 3 + 544603 548208 . 1 3606 0 -chrXVI 545489 548359 HC_gene_8971_tx_1 1 + 545489 548359 . 2 520,1185 0,1686 -chrXVI 545548 548262 LC_gene_9360_tx_1 1 - 545548 548262 . 1 2715 0 -chrXVI 545619 548208 HC_gene_8971_tx_2 2 + 545619 548208 . 1 2590 0 -chrXVI 548462 549532 HC_gene_8972_tx_1 1 + 548462 549532 . 1 1071 0 -chrXVI 548462 550422 HC_gene_8972_tx_2 9 + 548462 550422 . 1 1961 0 -chrXVI 548462 550475 HC_gene_8972_tx_3 1 + 548462 550475 . 1 2014 0 -chrXVI 548614 550422 HC_gene_8972_tx_4 1 + 548614 550422 . 1 1809 0 -chrXVI 550332 551323 HC_gene_9361_tx_1 1 - 550332 551323 . 2 66,452 0,540 -chrXVI 550438 550732 HC_gene_9361_tx_15 68 - 550438 550732 . 1 295 0 -chrXVI 550438 550994 HC_gene_9361_tx_16 240 - 550438 550994 . 1 557 0 -chrXVI 550438 550994 HC_gene_9361_tx_17 1 - 550438 550994 . 2 116,359 0,198 -chrXVI 550438 551323 HC_gene_9361_tx_2 115 - 550438 551323 . 1 886 0 -chrXVI 550438 551323 HC_gene_9361_tx_3 1 - 550438 551323 . 2 293,462 0,424 -chrXVI 550438 551493 HC_gene_9361_tx_4 35 - 550438 551493 . 1 1056 0 -chrXVI 550438 551493 HC_gene_9361_tx_5 1 - 550438 551493 . 2 158,833 0,223 -chrXVI 550438 551719 HC_gene_9361_tx_6 441 - 550438 551719 . 1 1282 0 -chrXVI 550438 551719 HC_gene_9361_tx_7 1 - 550438 551719 . 2 331,543 0,739 -chrXVI 550438 551719 HC_gene_9361_tx_8 1 - 550438 551719 . 2 343,822 0,460 -chrXVI 550438 551719 HC_gene_9361_tx_9 1 - 550438 551719 . 2 93,1095 0,187 -chrXVI 550438 551719 HC_gene_9361_tx_10 1 - 550438 551719 . 2 522,578 0,704 -chrXVI 550438 551719 HC_gene_9361_tx_11 1 - 550438 551719 . 2 283,636 0,646 -chrXVI 550438 551719 HC_gene_9361_tx_12 1 - 550438 551719 . 2 563,526 0,756 -chrXVI 550438 551719 HC_gene_9361_tx_13 1 - 550438 551719 . 2 571,651 0,631 -chrXVI 550438 551719 HC_gene_9361_tx_14 1 - 550438 551719 . 2 307,300 0,982 -chrXVI 552007 552602 HC_gene_8973_tx_1 8 + 552007 552602 . 1 596 0 -chrXVI 552007 553427 HC_gene_8973_tx_2 25 + 552007 553427 . 1 1421 0 -chrXVI 552007 553427 HC_gene_8973_tx_3 1 + 552007 553427 . 2 1055,305 0,1116 -chrXVI 552007 553427 HC_gene_8973_tx_4 1 + 552007 553427 . 2 199,1134 0,287 -chrXVI 552235 552602 HC_gene_8973_tx_6 1 + 552235 552602 . 1 368 0 -chrXVI 552235 553427 HC_gene_8973_tx_5 4 + 552235 553427 . 1 1193 0 -chrXVI 552532 554360 HC_gene_9362_tx_1 1 - 552532 554360 . 1 1829 0 -chrXVI 553326 553668 HC_gene_9362_tx_2 6 - 553326 553668 . 1 343 0 -chrXVI 553326 553743 HC_gene_9362_tx_3 6 - 553326 553743 . 1 418 0 -chrXVI 553326 554022 HC_gene_9362_tx_4 2 - 553326 554022 . 1 697 0 -chrXVI 553326 554360 HC_gene_9362_tx_5 26 - 553326 554360 . 1 1035 0 -chrXVI 553520 554561 HC_gene_8974_tx_1 1 + 553520 554561 . 1 1042 0 -chrXVI 554484 555105 LC_gene_9363_tx_1 1 - 554484 555105 . 1 622 0 -chrXVI 554588 555771 HC_gene_8975_tx_1 37 + 554588 555771 . 1 1184 0 -chrXVI 556229 557270 MC_gene_9364_tx_1 1 - 556229 557270 . 1 1042 0 -chrXVI 556313 557327 MC_gene_9364_tx_2 1 - 556313 557327 . 1 1015 0 -chrXVI 556353 558022 MC_gene_8976_tx_1 1 + 556353 558022 . 1 1670 0 -chrXVI 557110 557504 MC_gene_9365_tx_1 1 - 557110 557504 . 1 395 0 -chrXVI 557849 558344 MC_gene_9366_tx_1 1 - 557849 558344 . 1 496 0 -chrXVI 557970 558335 MC_gene_8977_tx_1 1 + 557970 558335 . 1 366 0 -chrXVI 558371 560132 HC_gene_8978_tx_1 5 + 558371 560132 . 1 1762 0 -chrXVI 559433 560132 HC_gene_8978_tx_2 2 + 559433 560132 . 1 700 0 -chrXVI 560035 560287 MC_gene_9367_tx_1 1 - 560035 560287 . 1 253 0 -chrXVI 560410 560772 MC_gene_8979_tx_1 1 + 560410 560772 . 1 363 0 -chrXVI 560654 561131 HC_gene_9368_tx_1 26 - 560654 561131 . 1 478 0 -chrXVI 561155 562317 MC_gene_9369_tx_1 1 - 561155 562317 . 1 1163 0 -chrXVI 563129 563592 HC_gene_9370_tx_1 4 - 563129 563592 . 1 464 0 -chrXVI 563129 563833 HC_gene_9370_tx_2 5 - 563129 563833 . 1 705 0 -chrXVI 563301 563952 LC_gene_8980_tx_1 1 + 563301 563952 . 1 652 0 -chrXVI 563851 564486 HC_gene_9371_tx_1 1 - 563851 564486 . 1 636 0 -chrXVI 563950 564486 HC_gene_9371_tx_2 20 - 563950 564486 . 1 537 0 -chrXVI 563950 564832 HC_gene_9372_tx_1 13 - 563950 564832 . 1 883 0 -chrXVI 563950 564924 HC_gene_9372_tx_2 3 - 563950 564924 . 1 975 0 -chrXVI 563950 565056 HC_gene_9372_tx_3 131 - 563950 565056 . 1 1107 0 -chrXVI 564081 564453 MC_gene_8981_tx_1 1 + 564081 564453 . 1 373 0 -chrXVI 565348 566170 HC_gene_8982_tx_1 3 + 565348 566170 . 1 823 0 -chrXVI 565453 565885 HC_gene_9373_tx_1 6 - 565453 565885 . 1 433 0 -chrXVI 565453 566691 HC_gene_9373_tx_2 10 - 565453 566691 . 1 1239 0 -chrXVI 565453 566902 HC_gene_9373_tx_3 2 - 565453 566902 . 1 1450 0 -chrXVI 565555 565885 HC_gene_9373_tx_7 1 - 565555 565885 . 1 331 0 -chrXVI 565555 566691 HC_gene_9373_tx_4 2 - 565555 566691 . 1 1137 0 -chrXVI 565555 566902 HC_gene_9373_tx_5 3 - 565555 566902 . 1 1348 0 -chrXVI 565625 566691 HC_gene_9373_tx_6 3 - 565625 566691 . 1 1067 0 -chrXVI 566725 567596 HC_gene_9374_tx_1 1 - 566725 567596 . 1 872 0 -chrXVI 567151 567596 HC_gene_9374_tx_2 9 - 567151 567596 . 1 446 0 -chrXVI 567151 567958 HC_gene_9374_tx_3 44 - 567151 567958 . 1 808 0 -chrXVI 567277 569218 HC_gene_8983_tx_1 1 + 567277 569218 . 2 100,1131 0,811 -chrXVI 568118 569218 HC_gene_8983_tx_2 1 + 568118 569218 . 1 1101 0 -chrXVI 569111 571087 HC_gene_9375_tx_1 1 - 569111 571087 . 1 1977 0 -chrXVI 569111 571087 HC_gene_9375_tx_2 1 - 569111 571087 . 2 840,1056 0,921 -chrXVI 570817 571488 MC_gene_8984_tx_1 1 + 570817 571488 . 1 672 0 -chrXVI 571395 572109 LC_gene_9376_tx_1 1 - 571395 572109 . 1 715 0 -chrXVI 572480 575207 HC_gene_8985_tx_1 1 + 572480 575207 . 1 2728 0 -chrXVI 572705 575207 HC_gene_8985_tx_2 18 + 572705 575207 . 1 2503 0 -chrXVI 572705 575207 HC_gene_8985_tx_3 1 + 572705 575207 . 2 1562,776 0,1727 -chrXVI 572705 575207 HC_gene_8985_tx_4 1 + 572705 575207 . 2 1271,1111 0,1392 -chrXVI 572705 575207 HC_gene_8985_tx_5 1 + 572705 575207 . 2 1945,507 0,1996 -chrXVI 572705 575207 HC_gene_8985_tx_6 1 + 572705 575207 . 2 1049,1385 0,1118 -chrXVI 572705 575207 HC_gene_8985_tx_7 1 + 572705 575207 . 2 1253,1100 0,1403 -chrXVI 572705 575207 HC_gene_8985_tx_8 1 + 572705 575207 . 2 1323,1116 0,1387 -chrXVI 572705 575207 HC_gene_8985_tx_9 1 + 572705 575207 . 2 1352,1090 0,1413 -chrXVI 572705 575207 HC_gene_8985_tx_10 1 + 572705 575207 . 2 1271,1090 0,1413 -chrXVI 572705 575207 HC_gene_8985_tx_11 1 + 572705 575207 . 2 1325,1128 0,1375 -chrXVI 572832 575207 HC_gene_8985_tx_12 7 + 572832 575207 . 1 2376 0 -chrXVI 573050 575207 HC_gene_8985_tx_13 8 + 573050 575207 . 1 2158 0 -chrXVI 573193 575207 HC_gene_8985_tx_14 4 + 573193 575207 . 1 2015 0 -chrXVI 573853 575207 HC_gene_8985_tx_15 7 + 573853 575207 . 1 1355 0 -chrXVI 573984 575207 HC_gene_8985_tx_16 10 + 573984 575207 . 1 1224 0 -chrXVI 574408 575207 HC_gene_8985_tx_17 9 + 574408 575207 . 1 800 0 -chrXVI 575122 575498 HC_gene_9377_tx_1 2 - 575122 575498 . 1 377 0 -chrXVI 575424 575713 LC_gene_8986_tx_1 1 + 575424 575713 . 1 290 0 -chrXVI 575544 575914 HC_gene_9378_tx_1 6 - 575544 575914 . 1 371 0 -chrXVI 576457 577427 HC_gene_8987_tx_1 61 + 576457 577427 . 1 971 0 -chrXVI 576457 577427 HC_gene_8987_tx_2 1 + 576457 577427 . 2 95,815 0,156 -chrXVI 576457 577427 HC_gene_8987_tx_3 1 + 576457 577427 . 2 299,588 0,383 -chrXVI 576457 577549 HC_gene_8987_tx_4 29 + 576457 577549 . 1 1093 0 -chrXVI 577308 578188 HC_gene_9379_tx_1 2 - 577308 578188 . 1 881 0 -chrXVI 577308 578634 HC_gene_9379_tx_4 1 - 577308 578634 . 1 1327 0 -chrXVI 577308 579008 HC_gene_9379_tx_5 1 - 577308 579008 . 2 1295,147 0,1554 -chrXVI 577308 579008 HC_gene_9379_tx_6 2 - 577308 579008 . 1 1701 0 -chrXVI 577308 579620 HC_gene_9379_tx_12 1 - 577308 579620 . 1 2313 0 -chrXVI 577308 581230 HC_gene_9379_tx_14 2 - 577308 581230 . 1 3923 0 -chrXVI 577401 578188 HC_gene_9379_tx_2 31 - 577401 578188 . 1 788 0 -chrXVI 577401 578188 HC_gene_9379_tx_3 1 - 577401 578188 . 2 451,222 0,566 -chrXVI 577401 578545 HC_gene_9379_tx_7 20 - 577401 578545 . 1 1145 0 -chrXVI 577401 578634 HC_gene_9379_tx_8 22 - 577401 578634 . 1 1234 0 -chrXVI 577401 578893 HC_gene_9379_tx_9 10 - 577401 578893 . 1 1493 0 -chrXVI 577401 579008 HC_gene_9379_tx_10 11 - 577401 579008 . 1 1608 0 -chrXVI 577401 579008 HC_gene_9379_tx_11 1 - 577401 579008 . 2 1128,261 0,1347 -chrXVI 577401 579620 HC_gene_9379_tx_13 11 - 577401 579620 . 1 2220 0 -chrXVI 577401 580520 HC_gene_9379_tx_15 3 - 577401 580520 . 1 3120 0 -chrXVI 577401 580810 HC_gene_9379_tx_16 3 - 577401 580810 . 1 3410 0 -chrXVI 577401 581022 HC_gene_9379_tx_17 2 - 577401 581022 . 1 3622 0 -chrXVI 577401 581230 HC_gene_9379_tx_18 1 - 577401 581230 . 2 2235,101 0,3729 -chrXVI 577401 581230 HC_gene_9379_tx_19 37 - 577401 581230 . 1 3830 0 -chrXVI 577401 581230 HC_gene_9379_tx_20 1 - 577401 581230 . 2 2741,275 0,3555 -chrXVI 581560 581995 MC_gene_8988_tx_1 1 + 581560 581995 . 1 436 0 -chrXVI 582222 582481 HC_gene_9380_tx_1 17 - 582222 582481 . 1 260 0 -chrXVI 582222 582779 HC_gene_9380_tx_2 198 - 582222 582779 . 2 337,78 0,480 -chrXVI 582222 582779 HC_gene_9380_tx_3 9 - 582222 582779 . 1 558 0 -chrXVI 582222 582779 HC_gene_9380_tx_4 2 - 582222 582779 . 2 337,65 0,493 -chrXVI 582222 582779 HC_gene_9380_tx_5 1 - 582222 582779 . 2 340,63 0,495 -chrXVI 582222 582779 HC_gene_9380_tx_6 1 - 582222 582779 . 2 329,78 0,480 -chrXVI 582222 582779 HC_gene_9380_tx_7 1 - 582222 582779 . 2 316,76 0,482 -chrXVI 582222 582779 HC_gene_9380_tx_8 1 - 582222 582779 . 2 340,76 0,482 -chrXVI 582296 582619 LC_gene_8989_tx_1 1 + 582296 582619 . 1 324 0 -chrXVI 582851 583527 HC_gene_9381_tx_1 3 - 582851 583527 . 1 677 0 -chrXVI 582851 584152 HC_gene_9381_tx_3 16 - 582851 584152 . 1 1302 0 -chrXVI 582851 584152 HC_gene_9381_tx_4 1 - 582851 584152 . 2 380,609 0,693 -chrXVI 582958 583527 HC_gene_9381_tx_2 1 - 582958 583527 . 1 570 0 -chrXVI 582958 584152 HC_gene_9381_tx_5 5 - 582958 584152 . 1 1195 0 -chrXVI 583765 584546 HC_gene_8990_tx_1 3 + 583765 584546 . 1 782 0 -chrXVI 584228 585756 HC_gene_9382_tx_1 7 - 584228 585756 . 1 1529 0 -chrXVI 584228 585756 HC_gene_9382_tx_2 1 - 584228 585756 . 3 721,400,238 0,778,1291 -chrXVI 584353 585756 HC_gene_9382_tx_3 18 - 584353 585756 . 1 1404 0 -chrXVI 584353 585756 HC_gene_9382_tx_4 1 - 584353 585756 . 2 832,451 0,953 -chrXVI 584353 585756 HC_gene_9382_tx_5 1 - 584353 585756 . 2 805,498 0,906 -chrXVI 584353 585756 HC_gene_9382_tx_6 1 - 584353 585756 . 2 1053,238 0,1166 -chrXVI 584353 585935 HC_gene_9382_tx_7 2 - 584353 585935 . 1 1583 0 -chrXVI 584531 585756 HC_gene_9382_tx_8 6 - 584531 585756 . 1 1226 0 -chrXVI 584531 586163 HC_gene_9383_tx_1 1 - 584531 586163 . 1 1633 0 -chrXVI 584531 586255 HC_gene_9383_tx_2 1 - 584531 586255 . 1 1725 0 -chrXVI 586419 586923 LC_gene_9384_tx_1 1 - 586419 586923 . 1 505 0 -chrXVI 586547 588245 HC_gene_8991_tx_1 7 + 586547 588245 . 1 1699 0 -chrXVI 587388 588133 LC_gene_9385_tx_1 1 - 587388 588133 . 1 746 0 -chrXVI 588427 589905 LC_gene_9386_tx_1 1 - 588427 589905 . 1 1479 0 -chrXVI 590133 590497 HC_gene_9387_tx_1 8 - 590133 590497 . 1 365 0 -chrXVI 590133 591115 HC_gene_9387_tx_2 5 - 590133 591115 . 1 983 0 -chrXVI 590693 591731 LC_gene_8992_tx_1 1 + 590693 591731 . 1 1039 0 -chrXVI 591814 592287 LC_gene_8993_tx_1 1 + 591814 592287 . 1 474 0 -chrXVI 592188 592524 HC_gene_9388_tx_1 30 - 592188 592524 . 1 337 0 -chrXVI 592188 592594 HC_gene_9388_tx_2 70 - 592188 592594 . 1 407 0 -chrXVI 592188 592878 HC_gene_9388_tx_3 37 - 592188 592878 . 1 691 0 -chrXVI 592188 593162 HC_gene_9388_tx_4 321 - 592188 593162 . 1 975 0 -chrXVI 593222 593689 HC_gene_9389_tx_1 4 - 593222 593689 . 1 468 0 -chrXVI 593222 593944 HC_gene_9389_tx_2 76 - 593222 593944 . 1 723 0 -chrXVI 593222 594085 HC_gene_9389_tx_3 5 - 593222 594085 . 1 864 0 -chrXVI 593406 596390 HC_gene_8994_tx_1 1 + 593406 596390 . 1 2985 0 -chrXVI 594385 596390 HC_gene_8994_tx_2 7 + 594385 596390 . 1 2006 0 -chrXVI 594385 596390 HC_gene_8994_tx_3 1 + 594385 596390 . 3 182,993,525 0,308,1481 -chrXVI 594385 596390 HC_gene_8994_tx_4 1 + 594385 596390 . 2 473,1447 0,559 -chrXVI 596290 596479 MC_gene_9390_tx_1 1 - 596290 596479 . 1 190 0 -chrXVI 596663 599694 HC_gene_8995_tx_1 16 + 596663 599694 . 1 3032 0 -chrXVI 596663 599694 HC_gene_8995_tx_2 1 + 596663 599694 . 2 1716,1230 0,1802 -chrXVI 596663 599694 HC_gene_8995_tx_3 1 + 596663 599694 . 2 1750,1177 0,1855 -chrXVI 599820 600328 HC_gene_8996_tx_1 319 + 599820 600328 . 1 509 0 -chrXVI 600236 600441 MC_gene_9391_tx_1 1 - 600236 600441 . 1 206 0 -chrXVI 600578 603587 HC_gene_9392_tx_1 1 - 600578 603587 . 2 1866,1004 0,2006 -chrXVI 600578 603587 HC_gene_9392_tx_2 5 - 600578 603587 . 1 3010 0 -chrXVI 601863 602302 LC_gene_8997_tx_1 1 + 601863 602302 . 1 440 0 -chrXVI 602867 603587 HC_gene_9392_tx_3 2 - 602867 603587 . 1 721 0 -chrXVI 603723 607354 HC_gene_9393_tx_1 1 - 603723 607354 . 1 3632 0 -chrXVI 603838 607354 HC_gene_9393_tx_2 6 - 603838 607354 . 1 3517 0 -chrXVI 607560 608071 HC_gene_8998_tx_1 2 + 607560 608071 . 1 512 0 -chrXVI 607560 608838 HC_gene_8998_tx_2 1 + 607560 608838 . 1 1279 0 -chrXVI 607915 608251 MC_gene_9394_tx_1 1 - 607915 608251 . 1 337 0 -chrXVI 608389 609116 HC_gene_9395_tx_1 1 - 608389 609116 . 1 728 0 -chrXVI 608389 609689 HC_gene_9395_tx_2 1 - 608389 609689 . 1 1301 0 -chrXVI 608389 610072 HC_gene_9395_tx_3 2 - 608389 610072 . 1 1684 0 -chrXVI 608514 609781 HC_gene_9395_tx_4 2 - 608514 609781 . 1 1268 0 -chrXVI 608514 609890 HC_gene_9395_tx_5 1 - 608514 609890 . 1 1377 0 -chrXVI 608514 610072 HC_gene_9395_tx_6 3 - 608514 610072 . 1 1559 0 -chrXVI 608623 609116 HC_gene_9395_tx_17 3 - 608623 609116 . 1 494 0 -chrXVI 608623 609595 HC_gene_9395_tx_7 2 - 608623 609595 . 1 973 0 -chrXVI 608623 609689 HC_gene_9395_tx_8 1 - 608623 609689 . 1 1067 0 -chrXVI 608623 609781 HC_gene_9395_tx_9 1 - 608623 609781 . 1 1159 0 -chrXVI 608623 609890 HC_gene_9395_tx_10 1 - 608623 609890 . 1 1268 0 -chrXVI 608623 610072 HC_gene_9395_tx_11 2 - 608623 610072 . 1 1450 0 -chrXVI 608685 609116 HC_gene_9395_tx_18 17 - 608685 609116 . 1 432 0 -chrXVI 608685 609595 HC_gene_9395_tx_12 4 - 608685 609595 . 1 911 0 -chrXVI 608685 609689 HC_gene_9395_tx_13 4 - 608685 609689 . 1 1005 0 -chrXVI 608685 609781 HC_gene_9395_tx_14 7 - 608685 609781 . 1 1097 0 -chrXVI 608685 609890 HC_gene_9395_tx_15 9 - 608685 609890 . 1 1206 0 -chrXVI 608685 610072 HC_gene_9395_tx_16 64 - 608685 610072 . 1 1388 0 -chrXVI 610395 613236 HC_gene_8999_tx_1 23 + 610395 613236 . 1 2842 0 -chrXVI 610395 613236 HC_gene_8999_tx_2 1 + 610395 613236 . 2 2066,661 0,2181 -chrXVI 610395 613236 HC_gene_8999_tx_3 1 + 610395 613236 . 2 2351,428 0,2414 -chrXVI 610395 613368 HC_gene_8999_tx_4 6 + 610395 613368 . 1 2974 0 -chrXVI 610593 613236 HC_gene_8999_tx_5 1 + 610593 613236 . 1 2644 0 -chrXVI 610593 613368 HC_gene_8999_tx_6 2 + 610593 613368 . 1 2776 0 -chrXVI 612362 613236 HC_gene_8999_tx_7 15 + 612362 613236 . 1 875 0 -chrXVI 612362 613368 HC_gene_8999_tx_8 3 + 612362 613368 . 1 1007 0 -chrXVI 613245 613686 HC_gene_9396_tx_1 13 - 613245 613686 . 1 442 0 -chrXVI 613245 613843 HC_gene_9396_tx_2 8 - 613245 613843 . 1 599 0 -chrXVI 613245 614353 HC_gene_9396_tx_3 7 - 613245 614353 . 1 1109 0 -chrXVI 613245 614353 HC_gene_9396_tx_4 1 - 613245 614353 . 2 603,363 0,746 -chrXVI 613245 614466 HC_gene_9396_tx_5 3 - 613245 614466 . 1 1222 0 -chrXVI 613245 614567 HC_gene_9396_tx_6 1 - 613245 614567 . 2 509,740 0,583 -chrXVI 613245 614579 HC_gene_9396_tx_7 34 - 613245 614579 . 1 1335 0 -chrXVI 614063 614579 HC_gene_9396_tx_8 1 - 614063 614579 . 1 517 0 -chrXVI 614767 615339 MC_gene_9000_tx_1 1 + 614767 615339 . 1 573 0 -chrXVI 615377 619118 HC_gene_9001_tx_1 1 + 615377 619118 . 1 3742 0 -chrXVI 615377 619191 HC_gene_9001_tx_2 1 + 615377 619191 . 1 3815 0 -chrXVI 615511 616288 MC_gene_9397_tx_1 1 - 615511 616288 . 1 778 0 -chrXVI 616903 619118 HC_gene_9001_tx_3 2 + 616903 619118 . 1 2216 0 -chrXVI 619636 619959 HC_gene_9398_tx_1 5 - 619636 619959 . 1 324 0 -chrXVI 620119 621414 HC_gene_9002_tx_1 1 + 620119 621414 . 1 1296 0 -chrXVI 620195 620891 HC_gene_9002_tx_6 5 + 620195 620891 . 1 697 0 -chrXVI 620195 621322 HC_gene_9002_tx_2 14 + 620195 621322 . 1 1128 0 -chrXVI 620195 621414 HC_gene_9002_tx_3 7 + 620195 621414 . 1 1220 0 -chrXVI 620195 621414 HC_gene_9002_tx_4 1 + 620195 621414 . 3 124,210,681 0,182,539 -chrXVI 620195 621548 HC_gene_9002_tx_5 1 + 620195 621548 . 1 1354 0 -chrXVI 620195 621931 HC_gene_9002_tx_7 1 + 620195 621931 . 1 1737 0 -chrXVI 621773 622356 MC_gene_9399_tx_1 1 - 621773 622356 . 1 584 0 -chrXVI 622410 622611 LC_gene_9400_tx_1 1 - 622410 622611 . 1 202 0 -chrXVI 622724 623168 LC_gene_9401_tx_1 1 - 622724 623168 . 1 445 0 -chrXVI 622872 624355 HC_gene_9003_tx_1 2 + 622872 624355 . 2 706,645 0,839 -chrXVI 622990 624355 HC_gene_9003_tx_2 18 + 622990 624355 . 2 588,645 0,721 -chrXVI 622990 624355 HC_gene_9003_tx_3 10 + 622990 624355 . 1 1366 0 -chrXVI 623489 624355 HC_gene_9003_tx_4 469 + 623489 624355 . 2 89,645 0,222 -chrXVI 623489 624355 HC_gene_9003_tx_5 10 + 623489 624355 . 2 93,645 0,222 -chrXVI 623489 624355 HC_gene_9003_tx_6 11 + 623489 624355 . 1 867 0 -chrXVI 623489 624355 HC_gene_9003_tx_7 1 + 623489 624355 . 2 101,628 0,239 -chrXVI 623489 624355 HC_gene_9003_tx_8 1 + 623489 624355 . 2 66,647 0,220 -chrXVI 623489 624355 HC_gene_9003_tx_9 6 + 623489 624355 . 2 89,642 0,225 -chrXVI 623489 624355 HC_gene_9003_tx_10 1 + 623489 624355 . 2 93,628 0,239 -chrXVI 623489 624355 HC_gene_9003_tx_11 1 + 623489 624355 . 2 54,659 0,208 -chrXVI 623489 624355 HC_gene_9003_tx_12 1 + 623489 624355 . 2 54,671 0,196 -chrXVI 623489 624355 HC_gene_9003_tx_13 1 + 623489 624355 . 2 84,639 0,228 -chrXVI 623489 624355 HC_gene_9003_tx_14 1 + 623489 624355 . 2 64,647 0,220 -chrXVI 623489 624355 HC_gene_9003_tx_15 1 + 623489 624355 . 2 88,639 0,228 -chrXVI 623489 624453 HC_gene_9003_tx_16 4 + 623489 624453 . 2 89,743 0,222 -chrXVI 623489 624453 HC_gene_9003_tx_17 1 + 623489 624453 . 2 64,745 0,220 -chrXVI 623489 624453 HC_gene_9003_tx_18 1 + 623489 624453 . 3 89,634,41 0,222,924 -chrXVI 623489 624453 HC_gene_9003_tx_19 1 + 623489 624453 . 1 965 0 -chrXVI 623829 624355 HC_gene_9003_tx_20 105 + 623829 624355 . 1 527 0 -chrXVI 623829 624453 HC_gene_9003_tx_21 2 + 623829 624453 . 1 625 0 -chrXVI 623829 624555 HC_gene_9003_tx_22 1 + 623829 624555 . 1 727 0 -chrXVI 624061 624355 HC_gene_9003_tx_23 61 + 624061 624355 . 1 295 0 -chrXVI 624061 624453 HC_gene_9003_tx_24 2 + 624061 624453 . 1 393 0 -chrXVI 624266 625389 HC_gene_9402_tx_1 3 - 624266 625389 . 1 1124 0 -chrXVI 624266 626828 HC_gene_9402_tx_2 3 - 624266 626828 . 1 2563 0 -chrXVI 624266 627023 HC_gene_9402_tx_3 1 - 624266 627023 . 2 1285,1220 0,1538 -chrXVI 624266 627023 HC_gene_9402_tx_4 7 - 624266 627023 . 1 2758 0 -chrXVI 625565 627023 HC_gene_9402_tx_5 1 - 625565 627023 . 1 1459 0 -chrXVI 627857 628433 MC_gene_9004_tx_1 1 + 627857 628433 . 1 577 0 -chrXVI 628392 629041 HC_gene_9403_tx_1 1 - 628392 629041 . 1 650 0 -chrXVI 628593 631345 HC_gene_9005_tx_1 1 + 628593 631345 . 1 2753 0 -chrXVI 629201 631345 HC_gene_9005_tx_2 5 + 629201 631345 . 1 2145 0 -chrXVI 629201 631345 HC_gene_9005_tx_3 1 + 629201 631345 . 2 246,1845 0,300 -chrXVI 629672 631345 HC_gene_9005_tx_4 2 + 629672 631345 . 1 1674 0 -chrXVI 631044 631345 HC_gene_9005_tx_5 4 + 631044 631345 . 1 302 0 -chrXVI 631488 633888 HC_gene_9006_tx_1 10 + 631488 633888 . 1 2401 0 -chrXVI 634072 637328 HC_gene_9007_tx_1 4 + 634072 637328 . 1 3257 0 -chrXVI 634072 637328 HC_gene_9007_tx_2 1 + 634072 637328 . 2 91,2614 0,643 -chrXVI 637252 637736 HC_gene_9404_tx_1 41 - 637252 637736 . 1 485 0 -chrXVI 637252 638040 HC_gene_9404_tx_2 52 - 637252 638040 . 1 789 0 -chrXVI 637252 638327 HC_gene_9404_tx_3 24 - 637252 638327 . 1 1076 0 -chrXVI 637252 638327 HC_gene_9404_tx_4 1 - 637252 638327 . 2 491,461 0,615 -chrXVI 637252 638659 HC_gene_9404_tx_5 23 - 637252 638659 . 1 1408 0 -chrXVI 637252 638659 HC_gene_9404_tx_6 1 - 637252 638659 . 2 1052,127 0,1281 -chrXVI 637252 638659 HC_gene_9404_tx_7 1 - 637252 638659 . 2 842,523 0,885 -chrXVI 637252 638757 HC_gene_9404_tx_8 23 - 637252 638757 . 1 1506 0 -chrXVI 637252 639006 HC_gene_9404_tx_9 201 - 637252 639006 . 1 1755 0 -chrXVI 637252 639006 HC_gene_9404_tx_10 1 - 637252 639006 . 2 574,1059 0,696 -chrXVI 637252 639006 HC_gene_9404_tx_11 1 - 637252 639006 . 2 732,894 0,861 -chrXVI 637252 639006 HC_gene_9404_tx_12 1 - 637252 639006 . 2 813,855 0,900 -chrXVI 637252 639006 HC_gene_9404_tx_13 1 - 637252 639006 . 2 1336,165 0,1590 -chrXVI 637252 639006 HC_gene_9404_tx_14 1 - 637252 639006 . 2 564,1110 0,645 -chrXVI 637252 639006 HC_gene_9404_tx_15 1 - 637252 639006 . 2 773,919 0,836 -chrXVI 637252 639006 HC_gene_9404_tx_16 1 - 637252 639006 . 2 752,230 0,1525 -chrXVI 637252 639006 HC_gene_9404_tx_17 1 - 637252 639006 . 2 771,917 0,838 -chrXVI 637252 639006 HC_gene_9404_tx_18 1 - 637252 639006 . 2 805,833 0,922 -chrXVI 637252 639006 HC_gene_9404_tx_19 1 - 637252 639006 . 2 837,850 0,905 -chrXVI 637252 639006 HC_gene_9404_tx_20 1 - 637252 639006 . 2 749,894 0,861 -chrXVI 639274 641224 HC_gene_9008_tx_1 3 + 639274 641224 . 1 1951 0 -chrXVI 639472 641224 HC_gene_9008_tx_2 37 + 639472 641224 . 1 1753 0 -chrXVI 639472 641224 HC_gene_9008_tx_3 1 + 639472 641224 . 2 943,769 0,984 -chrXVI 639472 641224 HC_gene_9008_tx_4 1 + 639472 641224 . 2 1061,593 0,1160 -chrXVI 640005 641224 HC_gene_9008_tx_5 8 + 640005 641224 . 1 1220 0 -chrXVI 640005 641224 HC_gene_9008_tx_6 1 + 640005 641224 . 2 826,300 0,920 -chrXVI 640005 641224 HC_gene_9008_tx_7 1 + 640005 641224 . 2 401,727 0,493 -chrXVI 640267 641088 MC_gene_9405_tx_1 1 - 640267 641088 . 1 822 0 -chrXVI 641239 641524 MC_gene_9009_tx_1 1 + 641239 641524 . 1 286 0 -chrXVI 642090 643557 HC_gene_9010_tx_1 1126 + 642090 643557 . 1 1468 0 -chrXVI 642473 643557 HC_gene_9010_tx_2 498 + 642473 643557 . 1 1085 0 -chrXVI 642700 643557 HC_gene_9010_tx_3 268 + 642700 643557 . 1 858 0 -chrXVI 642791 643303 LC_gene_9406_tx_1 1 - 642791 643303 . 1 513 0 -chrXVI 642932 643557 HC_gene_9010_tx_4 690 + 642932 643557 . 1 626 0 -chrXVI 643082 643557 HC_gene_9010_tx_5 39 + 643082 643557 . 1 476 0 -chrXVI 643184 643557 HC_gene_9010_tx_6 319 + 643184 643557 . 1 374 0 -chrXVI 643749 644964 HC_gene_9407_tx_1 2 - 643749 644964 . 1 1216 0 -chrXVI 643779 645366 HC_gene_9011_tx_1 201 + 643779 645366 . 1 1588 0 -chrXVI 644010 645366 HC_gene_9011_tx_2 12 + 644010 645366 . 1 1357 0 -chrXVI 644236 645366 HC_gene_9011_tx_3 28 + 644236 645366 . 1 1131 0 -chrXVI 644521 645366 HC_gene_9011_tx_4 14 + 644521 645366 . 1 846 0 -chrXVI 644685 645366 HC_gene_9011_tx_5 40 + 644685 645366 . 1 682 0 -chrXVI 644759 645366 HC_gene_9011_tx_6 23 + 644759 645366 . 1 608 0 -chrXVI 645056 645366 HC_gene_9011_tx_7 32 + 645056 645366 . 1 311 0 -chrXVI 645278 646102 MC_gene_9408_tx_1 1 - 645278 646102 . 1 825 0 -chrXVI 645874 646423 HC_gene_9012_tx_1 2776 + 645874 646423 . 1 550 0 -chrXVI 646368 646850 HC_gene_9409_tx_1 27 - 646368 646850 . 1 483 0 -chrXVI 646368 647089 HC_gene_9409_tx_2 144 - 646368 647089 . 1 722 0 -chrXVI 646443 646941 LC_gene_9013_tx_1 1 + 646443 646941 . 1 499 0 -chrXVI 647298 648449 HC_gene_9014_tx_1 38 + 647298 648449 . 1 1152 0 -chrXVI 647298 648449 HC_gene_9014_tx_2 1 + 647298 648449 . 2 405,503 0,649 -chrXVI 647548 648449 HC_gene_9014_tx_3 5 + 647548 648449 . 1 902 0 -chrXVI 647982 648339 MC_gene_9410_tx_1 1 - 647982 648339 . 1 358 0 -chrXVI 648596 650059 HC_gene_9015_tx_1 230 + 648596 650059 . 1 1464 0 -chrXVI 648596 650059 HC_gene_9015_tx_2 1 + 648596 650059 . 2 86,923 0,541 -chrXVI 648596 650059 HC_gene_9015_tx_3 1 + 648596 650059 . 2 501,551 0,913 -chrXVI 648596 650059 HC_gene_9015_tx_4 1 + 648596 650059 . 2 961,437 0,1027 -chrXVI 648596 650059 HC_gene_9015_tx_5 1 + 648596 650059 . 2 862,551 0,913 -chrXVI 648596 650059 HC_gene_9015_tx_6 1 + 648596 650059 . 2 113,923 0,541 -chrXVI 648596 650059 HC_gene_9015_tx_7 1 + 648596 650059 . 2 248,768 0,696 -chrXVI 648789 650059 HC_gene_9015_tx_8 28 + 648789 650059 . 1 1271 0 -chrXVI 648789 650059 HC_gene_9015_tx_9 1 + 648789 650059 . 2 87,816 0,455 -chrXVI 648789 650059 HC_gene_9015_tx_10 1 + 648789 650059 . 2 285,841 0,430 -chrXVI 649205 650059 HC_gene_9015_tx_11 50 + 649205 650059 . 1 855 0 -chrXVI 649374 650059 HC_gene_9015_tx_12 64 + 649374 650059 . 1 686 0 -chrXVI 649579 650059 HC_gene_9015_tx_13 94 + 649579 650059 . 1 481 0 -chrXVI 649682 650059 HC_gene_9015_tx_14 75 + 649682 650059 . 1 378 0 -chrXVI 649971 652370 HC_gene_9411_tx_1 1 - 649971 652370 . 1 2400 0 -chrXVI 649971 652487 HC_gene_9411_tx_2 1 - 649971 652487 . 1 2517 0 -chrXVI 649971 653787 HC_gene_9411_tx_3 1 - 649971 653787 . 1 3817 0 -chrXVI 652257 653787 HC_gene_9411_tx_4 1 - 652257 653787 . 1 1531 0 -chrXVI 654145 654923 HC_gene_9016_tx_1 101 + 654145 654923 . 1 779 0 -chrXVI 654559 654923 HC_gene_9016_tx_2 5875 + 654559 654923 . 1 365 0 -chrXVI 655028 655980 HC_gene_9412_tx_1 1 - 655028 655980 . 1 953 0 -chrXVI 655028 656188 HC_gene_9412_tx_2 4 - 655028 656188 . 1 1161 0 -chrXVI 655028 656611 HC_gene_9412_tx_3 11 - 655028 656611 . 1 1584 0 -chrXVI 655098 655980 HC_gene_9412_tx_4 5 - 655098 655980 . 1 883 0 -chrXVI 655098 656188 HC_gene_9412_tx_5 2 - 655098 656188 . 1 1091 0 -chrXVI 655098 656341 HC_gene_9412_tx_6 3 - 655098 656341 . 1 1244 0 -chrXVI 655098 656611 HC_gene_9412_tx_7 1 - 655098 656611 . 2 618,812 0,702 -chrXVI 655098 656611 HC_gene_9412_tx_8 9 - 655098 656611 . 1 1514 0 -chrXVI 655098 656611 HC_gene_9412_tx_9 1 - 655098 656611 . 2 542,902 0,612 -chrXVI 655216 655876 LC_gene_9017_tx_1 1 + 655216 655876 . 1 661 0 -chrXVI 656778 657402 HC_gene_9018_tx_1 1 + 656778 657402 . 1 625 0 -chrXVI 656798 657405 HC_gene_9018_tx_2 1 + 656798 657405 . 1 608 0 -chrXVI 656807 657404 HC_gene_9018_tx_3 1 + 656807 657404 . 1 598 0 -chrXVI 656811 657404 HC_gene_9018_tx_4 1 + 656811 657404 . 1 594 0 -chrXVI 656812 657402 HC_gene_9018_tx_5 1 + 656812 657402 . 1 591 0 -chrXVI 656816 657406 HC_gene_9018_tx_6 1 + 656816 657406 . 1 591 0 -chrXVI 656817 657402 HC_gene_9018_tx_7 1 + 656817 657402 . 1 586 0 -chrXVI 656819 657407 HC_gene_9018_tx_8 1 + 656819 657407 . 1 589 0 -chrXVI 657295 658044 LC_gene_9413_tx_1 1 - 657295 658044 . 1 750 0 -chrXVI 657393 659043 HC_gene_9019_tx_1 2 + 657393 659043 . 1 1651 0 -chrXVI 657393 659126 HC_gene_9019_tx_2 1 + 657393 659126 . 1 1734 0 -chrXVI 657468 659043 HC_gene_9019_tx_3 12 + 657468 659043 . 1 1576 0 -chrXVI 657468 659126 HC_gene_9019_tx_4 2 + 657468 659126 . 1 1659 0 -chrXVI 658456 658976 LC_gene_9414_tx_1 1 - 658456 658976 . 1 521 0 -chrXVI 659162 660903 HC_gene_9020_tx_1 1 + 659162 660903 . 1 1742 0 -chrXVI 659162 661129 HC_gene_9020_tx_2 11 + 659162 661129 . 1 1968 0 -chrXVI 659162 661286 HC_gene_9020_tx_3 1 + 659162 661286 . 1 2125 0 -chrXVI 661051 664741 HC_gene_9415_tx_1 1 - 661051 664741 . 1 3691 0 -chrXVI 663245 664741 HC_gene_9415_tx_2 2 - 663245 664741 . 1 1497 0 -chrXVI 664923 665594 HC_gene_9021_tx_1 2 + 664923 665594 . 1 672 0 -chrXVI 664924 665594 HC_gene_9021_tx_2 3 + 664924 665594 . 1 671 0 -chrXVI 664935 665594 HC_gene_9021_tx_3 3 + 664935 665594 . 1 660 0 -chrXVI 664936 665594 HC_gene_9021_tx_4 1 + 664936 665594 . 1 659 0 -chrXVI 664937 665594 HC_gene_9021_tx_5 117 + 664937 665594 . 1 658 0 -chrXVI 664937 665594 HC_gene_9021_tx_6 1 + 664937 665594 . 2 186,391 0,267 -chrXVI 664937 665755 HC_gene_9021_tx_7 4 + 664937 665755 . 1 819 0 -chrXVI 664937 665833 HC_gene_9021_tx_8 3 + 664937 665833 . 1 897 0 -chrXVI 664940 665594 HC_gene_9021_tx_9 1 + 664940 665594 . 1 655 0 -chrXVI 664941 665594 HC_gene_9021_tx_10 3 + 664941 665594 . 1 654 0 -chrXVI 664942 665594 HC_gene_9021_tx_11 1 + 664942 665594 . 1 653 0 -chrXVI 664945 665594 HC_gene_9021_tx_12 1 + 664945 665594 . 1 650 0 -chrXVI 664947 665594 HC_gene_9021_tx_13 6 + 664947 665594 . 1 648 0 -chrXVI 664948 665594 HC_gene_9021_tx_14 1 + 664948 665594 . 1 647 0 -chrXVI 664949 665594 HC_gene_9021_tx_15 1 + 664949 665594 . 1 646 0 -chrXVI 665095 665594 HC_gene_9021_tx_16 1 + 665095 665594 . 1 500 0 -chrXVI 665097 665594 HC_gene_9021_tx_17 1 + 665097 665594 . 1 498 0 -chrXVI 665125 665594 HC_gene_9021_tx_18 13 + 665125 665594 . 1 470 0 -chrXVI 665125 665833 HC_gene_9021_tx_20 1 + 665125 665833 . 1 709 0 -chrXVI 665135 665594 HC_gene_9021_tx_19 1 + 665135 665594 . 1 460 0 -chrXVI 665494 665773 HC_gene_9416_tx_1 30 - 665494 665773 . 1 280 0 -chrXVI 665494 666003 HC_gene_9416_tx_2 777 - 665494 666003 . 1 510 0 -chrXVI 665494 667437 HC_gene_9416_tx_3 16 - 665494 667437 . 1 1944 0 -chrXVI 667202 667494 LC_gene_9022_tx_1 1 + 667202 667494 . 1 293 0 -chrXVI 667628 669762 HC_gene_9023_tx_1 1 + 667628 669762 . 1 2135 0 -chrXVI 667628 669762 HC_gene_9023_tx_2 1 + 667628 669762 . 3 300,666,919 0,369,1216 -chrXVI 667628 670961 HC_gene_9023_tx_3 4 + 667628 670961 . 1 3334 0 -chrXVI 669221 670879 LC_gene_9417_tx_1 1 - 669221 670879 . 1 1659 0 -chrXVI 671089 672280 HC_gene_9024_tx_1 21 + 671089 672280 . 1 1192 0 -chrXVI 671089 672448 HC_gene_9024_tx_2 2 + 671089 672448 . 1 1360 0 -chrXVI 671422 672060 MC_gene_9418_tx_1 1 - 671422 672060 . 1 639 0 -chrXVI 671749 671932 MC_gene_9418_tx_2 1 - 671749 671932 . 1 184 0 -chrXVI 671789 672280 HC_gene_9024_tx_3 6 + 671789 672280 . 1 492 0 -chrXVI 671789 672380 HC_gene_9024_tx_4 1 + 671789 672380 . 1 592 0 -chrXVI 671856 672280 HC_gene_9024_tx_5 4 + 671856 672280 . 1 425 0 -chrXVI 672362 673226 LC_gene_9419_tx_1 1 - 672362 673226 . 1 865 0 -chrXVI 672489 673553 HC_gene_9025_tx_1 26 + 672489 673553 . 1 1065 0 -chrXVI 672978 673553 HC_gene_9025_tx_2 8 + 672978 673553 . 1 576 0 -chrXVI 673439 674404 MC_gene_9420_tx_1 1 - 673439 674404 . 1 966 0 -chrXVI 673666 674759 HC_gene_9026_tx_1 61 + 673666 674759 . 1 1094 0 -chrXVI 673666 674759 HC_gene_9026_tx_2 1 + 673666 674759 . 2 656,330 0,764 -chrXVI 673666 674759 HC_gene_9026_tx_3 1 + 673666 674759 . 2 331,641 0,453 -chrXVI 673666 674759 HC_gene_9026_tx_4 1 + 673666 674759 . 2 656,335 0,759 -chrXVI 673666 674836 HC_gene_9026_tx_5 11 + 673666 674836 . 1 1171 0 -chrXVI 673666 674898 HC_gene_9026_tx_6 9 + 673666 674898 . 1 1233 0 -chrXVI 674689 675317 HC_gene_9421_tx_1 15 - 674689 675317 . 1 629 0 -chrXVI 674689 675664 HC_gene_9421_tx_2 111 - 674689 675664 . 1 976 0 -chrXVI 675725 676013 MC_gene_9027_tx_1 1 + 675725 676013 . 1 289 0 -chrXVI 675894 676763 HC_gene_9422_tx_1 1 - 675894 676763 . 1 870 0 -chrXVI 675894 676930 HC_gene_9422_tx_2 15 - 675894 676930 . 1 1037 0 -chrXVI 675894 676930 HC_gene_9422_tx_3 1 - 675894 676930 . 2 48,936 0,101 -chrXVI 677172 677757 HC_gene_9028_tx_1 806 + 677172 677757 . 1 586 0 -chrXVI 677390 677757 HC_gene_9028_tx_2 86 + 677390 677757 . 1 368 0 -chrXVI 677503 678133 HC_gene_9423_tx_1 1 - 677503 678133 . 1 631 0 -chrXVI 677503 678234 HC_gene_9423_tx_2 4 - 677503 678234 . 1 732 0 -chrXVI 677503 678372 HC_gene_9423_tx_3 4 - 677503 678372 . 2 691,93 0,777 -chrXVI 677503 678372 HC_gene_9423_tx_4 1 - 677503 678372 . 2 691,86 0,784 -chrXVI 677519 677757 HC_gene_9028_tx_3 49 + 677519 677757 . 1 239 0 -chrXVI 677602 678133 HC_gene_9423_tx_5 43 - 677602 678133 . 1 532 0 -chrXVI 677602 678133 HC_gene_9423_tx_6 1 - 677602 678133 . 2 109,347 0,185 -chrXVI 677602 678133 HC_gene_9423_tx_7 1 - 677602 678133 . 2 299,121 0,411 -chrXVI 677602 678234 HC_gene_9423_tx_8 60 - 677602 678234 . 1 633 0 -chrXVI 677602 678372 HC_gene_9423_tx_9 258 - 677602 678372 . 2 592,93 0,678 -chrXVI 677602 678372 HC_gene_9423_tx_10 9 - 677602 678372 . 1 771 0 -chrXVI 677602 678372 HC_gene_9423_tx_11 10 - 677602 678372 . 2 592,86 0,685 -chrXVI 677602 678372 HC_gene_9423_tx_12 1 - 677602 678372 . 2 548,96 0,675 -chrXVI 677602 678372 HC_gene_9423_tx_13 1 - 677602 678372 . 2 597,101 0,670 -chrXVI 677602 678372 HC_gene_9423_tx_14 1 - 677602 678372 . 2 585,93 0,678 -chrXVI 677602 678372 HC_gene_9423_tx_15 1 - 677602 678372 . 2 617,86 0,685 -chrXVI 677602 678372 HC_gene_9423_tx_16 1 - 677602 678372 . 2 594,76 0,695 -chrXVI 677602 678697 HC_gene_9424_tx_1 1 - 677602 678697 . 1 1096 0 -chrXVI 678544 679408 MC_gene_9029_tx_1 1 + 678544 679408 . 1 865 0 -chrXVI 678725 679285 LC_gene_9425_tx_1 1 - 678725 679285 . 1 561 0 -chrXVI 679528 681113 HC_gene_9030_tx_1 1 + 679528 681113 . 1 1586 0 -chrXVI 679641 681113 HC_gene_9030_tx_2 19 + 679641 681113 . 1 1473 0 -chrXVI 679641 681113 HC_gene_9030_tx_3 1 + 679641 681113 . 2 818,556 0,917 -chrXVI 679652 680825 MC_gene_9426_tx_1 1 - 679652 680825 . 1 1174 0 -chrXVI 679850 681113 HC_gene_9030_tx_4 5 + 679850 681113 . 1 1264 0 -chrXVI 680124 681113 HC_gene_9030_tx_5 13 + 680124 681113 . 1 990 0 -chrXVI 680124 681113 HC_gene_9030_tx_6 1 + 680124 681113 . 2 317,614 0,376 -chrXVI 680253 681113 HC_gene_9030_tx_7 6 + 680253 681113 . 1 861 0 -chrXVI 680367 681113 HC_gene_9030_tx_8 9 + 680367 681113 . 1 747 0 -chrXVI 680478 681113 HC_gene_9030_tx_9 15 + 680478 681113 . 1 636 0 -chrXVI 680764 681113 HC_gene_9030_tx_10 8 + 680764 681113 . 1 350 0 -chrXVI 680999 681803 HC_gene_9427_tx_1 2 - 680999 681803 . 1 805 0 -chrXVI 681060 681803 HC_gene_9427_tx_2 2 - 681060 681803 . 1 744 0 -chrXVI 681205 682980 HC_gene_9031_tx_1 1 + 681205 682980 . 2 188,1528 0,248 -chrXVI 681205 682980 HC_gene_9031_tx_2 4 + 681205 682980 . 1 1776 0 -chrXVI 681620 682980 HC_gene_9031_tx_3 1 + 681620 682980 . 1 1361 0 -chrXVI 682173 682980 HC_gene_9031_tx_4 62 + 682173 682980 . 1 808 0 -chrXVI 682411 682980 HC_gene_9031_tx_5 14 + 682411 682980 . 1 570 0 -chrXVI 682741 684353 HC_gene_9428_tx_1 6 - 682741 684353 . 1 1613 0 -chrXVI 683895 684489 MC_gene_9032_tx_1 1 + 683895 684489 . 1 595 0 -chrXVI 684489 684851 HC_gene_9429_tx_1 57 - 684489 684851 . 1 363 0 -chrXVI 684489 684923 HC_gene_9429_tx_2 15 - 684489 684923 . 1 435 0 -chrXVI 684489 685008 HC_gene_9429_tx_3 53 - 684489 685008 . 1 520 0 -chrXVI 684489 685145 HC_gene_9429_tx_4 14 - 684489 685145 . 1 657 0 -chrXVI 684489 685237 HC_gene_9429_tx_5 44 - 684489 685237 . 1 749 0 -chrXVI 684489 685341 HC_gene_9429_tx_6 28 - 684489 685341 . 1 853 0 -chrXVI 684489 685475 HC_gene_9429_tx_7 350 - 684489 685475 . 1 987 0 -chrXVI 685636 687931 HC_gene_9033_tx_1 1 + 685636 687931 . 2 1182,980 0,1316 -chrXVI 685865 687929 HC_gene_9033_tx_2 1 + 685865 687929 . 1 2065 0 -chrXVI 685865 687930 HC_gene_9033_tx_3 1 + 685865 687930 . 1 2066 0 -chrXVI 685865 687931 HC_gene_9033_tx_4 2 + 685865 687931 . 1 2067 0 -chrXVI 685865 687932 HC_gene_9033_tx_5 1 + 685865 687932 . 1 2068 0 -chrXVI 685865 687938 HC_gene_9033_tx_6 1 + 685865 687938 . 1 2074 0 -chrXVI 688159 689154 HC_gene_9034_tx_1 4 + 688159 689154 . 1 996 0 -chrXVI 688159 689227 HC_gene_9034_tx_2 23 + 688159 689227 . 1 1069 0 -chrXVI 688392 689154 HC_gene_9034_tx_3 2 + 688392 689154 . 1 763 0 -chrXVI 688392 689227 HC_gene_9034_tx_4 5 + 688392 689227 . 1 836 0 -chrXVI 689999 690704 HC_gene_9035_tx_1 1 + 689999 690704 . 1 706 0 -chrXVI 689999 690729 HC_gene_9035_tx_2 3 + 689999 690729 . 1 731 0 -chrXVI 689999 691872 HC_gene_9035_tx_6 46 + 689999 691872 . 1 1874 0 -chrXVI 689999 691872 HC_gene_9035_tx_7 1 + 689999 691872 . 2 973,849 0,1025 -chrXVI 689999 691872 HC_gene_9035_tx_8 1 + 689999 691872 . 2 991,803 0,1071 -chrXVI 689999 691966 HC_gene_9035_tx_9 1 + 689999 691966 . 1 1968 0 -chrXVI 689999 692180 HC_gene_9035_tx_10 2 + 689999 692180 . 1 2182 0 -chrXVI 690012 691872 HC_gene_9035_tx_11 1 + 690012 691872 . 2 102,1587 0,274 -chrXVI 690094 690724 HC_gene_9035_tx_3 1 + 690094 690724 . 1 631 0 -chrXVI 690094 691872 HC_gene_9035_tx_12 7 + 690094 691872 . 1 1779 0 -chrXVI 690094 691966 HC_gene_9035_tx_13 1 + 690094 691966 . 1 1873 0 -chrXVI 690094 692788 HC_gene_9035_tx_21 1 + 690094 692788 . 1 2695 0 -chrXVI 690155 690702 HC_gene_9035_tx_4 1 + 690155 690702 . 1 548 0 -chrXVI 690155 690704 HC_gene_9035_tx_5 1 + 690155 690704 . 1 550 0 -chrXVI 690155 691872 HC_gene_9035_tx_14 1 + 690155 691872 . 2 356,892 0,826 -chrXVI 690155 691872 HC_gene_9035_tx_15 3 + 690155 691872 . 1 1718 0 -chrXVI 690155 692788 HC_gene_9035_tx_22 1 + 690155 692788 . 1 2634 0 -chrXVI 690356 691872 HC_gene_9035_tx_16 5 + 690356 691872 . 1 1517 0 -chrXVI 690356 691872 HC_gene_9035_tx_17 1 + 690356 691872 . 2 891,580 0,937 -chrXVI 690356 692180 HC_gene_9035_tx_18 1 + 690356 692180 . 1 1825 0 -chrXVI 690431 691872 HC_gene_9035_tx_19 4 + 690431 691872 . 1 1442 0 -chrXVI 690431 692180 HC_gene_9035_tx_20 1 + 690431 692180 . 1 1750 0 -chrXVI 690625 692481 HC_gene_9430_tx_1 1 - 690625 692481 . 1 1857 0 -chrXVI 690887 691872 HC_gene_9035_tx_23 5 + 690887 691872 . 1 986 0 -chrXVI 691465 692254 HC_gene_9430_tx_2 1 - 691465 692254 . 1 790 0 -chrXVI 691465 692481 HC_gene_9430_tx_3 1 - 691465 692481 . 1 1017 0 -chrXVI 691619 692254 HC_gene_9430_tx_4 2 - 691619 692254 . 1 636 0 -chrXVI 691619 692481 HC_gene_9430_tx_5 7 - 691619 692481 . 1 863 0 -chrXVI 691709 692254 HC_gene_9430_tx_6 38 - 691709 692254 . 1 546 0 -chrXVI 691709 692354 HC_gene_9430_tx_7 14 - 691709 692354 . 1 646 0 -chrXVI 691709 692481 HC_gene_9430_tx_8 155 - 691709 692481 . 1 773 0 -chrXVI 691709 692481 HC_gene_9430_tx_9 1 - 691709 692481 . 2 232,491 0,282 -chrXVI 692648 693203 HC_gene_9431_tx_1 92 - 692648 693203 . 1 556 0 -chrXVI 692648 693415 HC_gene_9431_tx_2 45 - 692648 693415 . 1 768 0 -chrXVI 692648 693521 HC_gene_9431_tx_3 99 - 692648 693521 . 1 874 0 -chrXVI 692648 693632 HC_gene_9431_tx_4 39 - 692648 693632 . 1 985 0 -chrXVI 692648 693704 HC_gene_9431_tx_5 24 - 692648 693704 . 1 1057 0 -chrXVI 692648 694201 HC_gene_9431_tx_6 125 - 692648 694201 . 1 1554 0 -chrXVI 692648 694201 HC_gene_9431_tx_7 1 - 692648 694201 . 2 515,374 0,1180 -chrXVI 692648 694201 HC_gene_9431_tx_8 1 - 692648 694201 . 2 546,945 0,609 -chrXVI 692648 694201 HC_gene_9431_tx_9 1 - 692648 694201 . 2 841,467 0,1087 -chrXVI 692648 694201 HC_gene_9431_tx_10 1 - 692648 694201 . 2 786,726 0,828 -chrXVI 692648 694510 HC_gene_9431_tx_11 23 - 692648 694510 . 1 1863 0 -chrXVI 692648 694904 HC_gene_9431_tx_12 284 - 692648 694904 . 1 2257 0 -chrXVI 692648 694904 HC_gene_9431_tx_13 1 - 692648 694904 . 2 1635,494 0,1763 -chrXVI 692648 694904 HC_gene_9431_tx_14 1 - 692648 694904 . 2 958,1248 0,1009 -chrXVI 692648 694904 HC_gene_9431_tx_15 1 - 692648 694904 . 2 519,1570 0,687 -chrXVI 692648 694904 HC_gene_9431_tx_16 1 - 692648 694904 . 2 1267,806 0,1451 -chrXVI 695382 695688 MC_gene_9036_tx_1 1 + 695382 695688 . 1 307 0 -chrXVI 695615 696234 HC_gene_9432_tx_1 13 - 695615 696234 . 1 620 0 -chrXVI 695615 696874 HC_gene_9432_tx_2 49 - 695615 696874 . 1 1260 0 -chrXVI 695750 697426 LC_gene_9037_tx_1 1 + 695750 697426 . 1 1677 0 -chrXVI 696967 697326 HC_gene_9433_tx_1 2 - 696967 697326 . 1 360 0 -chrXVI 697030 697326 HC_gene_9433_tx_2 3 - 697030 697326 . 1 297 0 -chrXVI 697548 698360 HC_gene_9038_tx_1 7 + 697548 698360 . 1 813 0 -chrXVI 697548 698412 HC_gene_9038_tx_2 1 + 697548 698412 . 1 865 0 -chrXVI 698780 700119 HC_gene_9039_tx_1 31 + 698780 700119 . 1 1340 0 -chrXVI 699379 699986 MC_gene_9434_tx_1 1 - 699379 699986 . 1 608 0 -chrXVI 699854 700119 HC_gene_9039_tx_2 8 + 699854 700119 . 1 266 0 -chrXVI 700037 700340 LC_gene_9435_tx_1 1 - 700037 700340 . 1 304 0 -chrXVI 700562 702075 HC_gene_9040_tx_1 5395 + 700562 702075 . 1 1514 0 -chrXVI 701287 702075 HC_gene_9040_tx_2 229 + 701287 702075 . 1 789 0 -chrXVI 701417 702075 HC_gene_9040_tx_3 1031 + 701417 702075 . 1 659 0 -chrXVI 702107 702368 MC_gene_9041_tx_1 1 + 702107 702368 . 1 262 0 -chrXVI 702349 703680 HC_gene_9436_tx_1 1 - 702349 703680 . 1 1332 0 -chrXVI 702349 703971 HC_gene_9436_tx_2 1 - 702349 703971 . 1 1623 0 -chrXVI 702349 704156 HC_gene_9436_tx_3 1 - 702349 704156 . 1 1808 0 -chrXVI 703442 704538 MC_gene_9042_tx_1 1 + 703442 704538 . 2 279,699 0,398 -chrXVI 704093 704527 HC_gene_9437_tx_1 8 - 704093 704527 . 1 435 0 -chrXVI 704093 704615 HC_gene_9437_tx_2 1 - 704093 704615 . 1 523 0 -chrXVI 704093 704617 HC_gene_9437_tx_3 1 - 704093 704617 . 1 525 0 -chrXVI 704093 704621 HC_gene_9437_tx_4 1 - 704093 704621 . 1 529 0 -chrXVI 704093 704623 HC_gene_9437_tx_5 1 - 704093 704623 . 1 531 0 -chrXVI 704093 704645 HC_gene_9437_tx_6 2 - 704093 704645 . 1 553 0 -chrXVI 704093 704646 HC_gene_9437_tx_7 1 - 704093 704646 . 1 554 0 -chrXVI 704093 704648 HC_gene_9437_tx_8 1 - 704093 704648 . 1 556 0 -chrXVI 704093 704650 HC_gene_9437_tx_9 1 - 704093 704650 . 1 558 0 -chrXVI 704093 704651 HC_gene_9437_tx_10 5 - 704093 704651 . 1 559 0 -chrXVI 704093 704659 HC_gene_9437_tx_11 4 - 704093 704659 . 1 567 0 -chrXVI 704093 704660 HC_gene_9437_tx_12 2 - 704093 704660 . 1 568 0 -chrXVI 704093 704662 HC_gene_9437_tx_13 1 - 704093 704662 . 1 570 0 -chrXVI 704093 704663 HC_gene_9437_tx_14 1 - 704093 704663 . 1 571 0 -chrXVI 704093 704664 HC_gene_9437_tx_15 115 - 704093 704664 . 1 572 0 -chrXVI 704093 704670 HC_gene_9437_tx_16 3 - 704093 704670 . 1 578 0 -chrXVI 704093 704671 HC_gene_9437_tx_17 2 - 704093 704671 . 1 579 0 -chrXVI 704093 704681 HC_gene_9437_tx_18 2 - 704093 704681 . 1 589 0 -chrXVI 704093 704697 HC_gene_9437_tx_19 1 - 704093 704697 . 1 605 0 -chrXVI 704225 704527 HC_gene_9437_tx_20 1 - 704225 704527 . 1 303 0 -chrXVI 704225 704664 HC_gene_9437_tx_21 7 - 704225 704664 . 1 440 0 -chrXVI 704829 706716 HC_gene_9043_tx_1 17 + 704829 706716 . 1 1888 0 -chrXVI 706886 708476 HC_gene_9044_tx_1 11 + 706886 708476 . 1 1591 0 -chrXVI 707023 708476 HC_gene_9044_tx_2 4 + 707023 708476 . 1 1454 0 -chrXVI 708307 709916 HC_gene_9438_tx_1 2 - 708307 709916 . 1 1610 0 -chrXVI 708383 709916 HC_gene_9438_tx_2 13 - 708383 709916 . 1 1534 0 -chrXVI 708749 709959 MC_gene_9045_tx_1 1 + 708749 709959 . 1 1211 0 -chrXVI 710056 711305 HC_gene_9046_tx_1 73 + 710056 711305 . 1 1250 0 -chrXVI 710056 711406 HC_gene_9046_tx_2 53 + 710056 711406 . 1 1351 0 -chrXVI 710225 711305 HC_gene_9046_tx_3 8 + 710225 711305 . 1 1081 0 -chrXVI 710225 711406 HC_gene_9046_tx_4 6 + 710225 711406 . 1 1182 0 -chrXVI 710367 711305 HC_gene_9046_tx_5 6 + 710367 711305 . 1 939 0 -chrXVI 710367 711406 HC_gene_9046_tx_6 10 + 710367 711406 . 1 1040 0 -chrXVI 710593 711305 HC_gene_9046_tx_7 3 + 710593 711305 . 1 713 0 -chrXVI 710593 711406 HC_gene_9046_tx_8 3 + 710593 711406 . 1 814 0 -chrXVI 710840 711305 HC_gene_9046_tx_9 11 + 710840 711305 . 1 466 0 -chrXVI 710840 711406 HC_gene_9046_tx_10 13 + 710840 711406 . 1 567 0 -chrXVI 710996 711305 HC_gene_9046_tx_11 9 + 710996 711305 . 1 310 0 -chrXVI 710996 711406 HC_gene_9046_tx_12 14 + 710996 711406 . 1 411 0 -chrXVI 711328 711907 HC_gene_9439_tx_1 27 - 711328 711907 . 1 580 0 -chrXVI 711328 712118 HC_gene_9439_tx_2 18 - 711328 712118 . 1 791 0 -chrXVI 711328 712231 HC_gene_9439_tx_3 18 - 711328 712231 . 1 904 0 -chrXVI 711328 712608 HC_gene_9439_tx_4 13 - 711328 712608 . 1 1281 0 -chrXVI 711328 712673 HC_gene_9439_tx_5 5 - 711328 712673 . 1 1346 0 -chrXVI 711328 713065 HC_gene_9439_tx_6 89 - 711328 713065 . 1 1738 0 -chrXVI 713233 716076 HC_gene_9047_tx_1 2 + 713233 716076 . 1 2844 0 -chrXVI 713233 716076 HC_gene_9047_tx_2 1 + 713233 716076 . 2 89,2228 0,616 -chrXVI 713233 716160 HC_gene_9047_tx_3 1 + 713233 716160 . 2 1533,1340 0,1588 -chrXVI 713233 716160 HC_gene_9047_tx_4 3 + 713233 716160 . 1 2928 0 -chrXVI 713233 716160 HC_gene_9047_tx_5 1 + 713233 716160 . 2 321,1047 0,1881 -chrXVI 713944 716076 HC_gene_9047_tx_6 1 + 713944 716076 . 2 894,1077 0,1056 -chrXVI 713944 716076 HC_gene_9047_tx_7 1 + 713944 716076 . 1 2133 0 -chrXVI 713944 716160 HC_gene_9047_tx_8 2 + 713944 716160 . 1 2217 0 -chrXVI 715802 716842 HC_gene_9440_tx_1 1 - 715802 716842 . 1 1041 0 -chrXVI 715802 718497 HC_gene_9440_tx_7 6 - 715802 718497 . 1 2696 0 -chrXVI 715942 716752 HC_gene_9440_tx_2 1 - 715942 716752 . 1 811 0 -chrXVI 715942 716918 HC_gene_9440_tx_3 1 - 715942 716918 . 1 977 0 -chrXVI 715942 718497 HC_gene_9440_tx_8 4 - 715942 718497 . 1 2556 0 -chrXVI 716054 716752 HC_gene_9440_tx_4 5 - 716054 716752 . 1 699 0 -chrXVI 716054 716842 HC_gene_9440_tx_5 2 - 716054 716842 . 1 789 0 -chrXVI 716054 716918 HC_gene_9440_tx_6 4 - 716054 716918 . 1 865 0 -chrXVI 716054 718497 HC_gene_9440_tx_9 11 - 716054 718497 . 1 2444 0 -chrXVI 718632 719309 HC_gene_9441_tx_1 19 - 718632 719309 . 1 678 0 -chrXVI 718632 719375 HC_gene_9441_tx_2 29 - 718632 719375 . 1 744 0 -chrXVI 718886 719309 HC_gene_9441_tx_3 8 - 718886 719309 . 1 424 0 -chrXVI 718886 719375 HC_gene_9441_tx_4 7 - 718886 719375 . 1 490 0 -chrXVI 718886 719375 HC_gene_9441_tx_5 1 - 718886 719375 . 2 325,100 0,390 -chrXVI 719429 720489 HC_gene_9442_tx_1 19 - 719429 720489 . 1 1061 0 -chrXVI 719590 721030 HC_gene_9048_tx_1 1 + 719590 721030 . 1 1441 0 -chrXVI 720271 721030 HC_gene_9048_tx_2 3 + 720271 721030 . 1 760 0 -chrXVI 720589 721030 HC_gene_9048_tx_3 78 + 720589 721030 . 1 442 0 -chrXVI 720936 724965 HC_gene_9443_tx_1 2 - 720936 724965 . 1 4030 0 -chrXVI 725157 727210 HC_gene_9049_tx_1 1 + 725157 727210 . 1 2054 0 -chrXVI 726004 727296 HC_gene_9050_tx_1 1 + 726004 727296 . 1 1293 0 -chrXVI 727320 728632 HC_gene_9051_tx_1 3 + 727320 728632 . 1 1313 0 -chrXVI 727320 728759 HC_gene_9051_tx_2 7 + 727320 728759 . 1 1440 0 -chrXVI 727320 728759 HC_gene_9051_tx_3 1 + 727320 728759 . 2 415,963 0,477 -chrXVI 728550 729181 HC_gene_9444_tx_1 2 - 728550 729181 . 1 632 0 -chrXVI 728550 729537 HC_gene_9444_tx_4 1 - 728550 729537 . 1 988 0 -chrXVI 728550 729537 HC_gene_9444_tx_5 1 - 728550 729537 . 2 836,56 0,932 -chrXVI 728667 729181 HC_gene_9444_tx_2 2 - 728667 729181 . 1 515 0 -chrXVI 728667 729370 HC_gene_9444_tx_6 6 - 728667 729370 . 1 704 0 -chrXVI 728667 729537 HC_gene_9444_tx_7 2 - 728667 729537 . 2 719,56 0,815 -chrXVI 728667 729537 HC_gene_9444_tx_8 1 - 728667 729537 . 3 23,556,56 0,163,815 -chrXVI 728667 729537 HC_gene_9444_tx_9 1 - 728667 729537 . 1 871 0 -chrXVI 728734 729181 HC_gene_9444_tx_3 28 - 728734 729181 . 1 448 0 -chrXVI 728734 729370 HC_gene_9444_tx_10 18 - 728734 729370 . 1 637 0 -chrXVI 728734 729537 HC_gene_9444_tx_11 15 - 728734 729537 . 2 652,56 0,748 -chrXVI 728734 729537 HC_gene_9444_tx_12 2 - 728734 729537 . 1 804 0 -chrXVI 728734 729537 HC_gene_9444_tx_13 3 - 728734 729537 . 2 652,54 0,750 -chrXVI 728734 730202 HC_gene_9444_tx_25 1 - 728734 730202 . 2 652,721 0,748 -chrXVI 728861 729181 HC_gene_9444_tx_26 1 - 728861 729181 . 1 321 0 -chrXVI 728862 729537 HC_gene_9444_tx_14 1 - 728862 729537 . 2 524,56 0,620 -chrXVI 728864 729537 HC_gene_9444_tx_15 1 - 728864 729537 . 2 522,56 0,618 -chrXVI 728868 729181 HC_gene_9444_tx_27 1 - 728868 729181 . 1 314 0 -chrXVI 728868 729370 HC_gene_9444_tx_31 1 - 728868 729370 . 1 503 0 -chrXVI 728870 729370 HC_gene_9444_tx_32 2 - 728870 729370 . 1 501 0 -chrXVI 728877 729537 HC_gene_9444_tx_16 1 - 728877 729537 . 2 509,56 0,605 -chrXVI 728890 729370 HC_gene_9444_tx_33 1 - 728890 729370 . 1 481 0 -chrXVI 728891 729370 HC_gene_9444_tx_34 1 - 728891 729370 . 1 480 0 -chrXVI 728897 729181 HC_gene_9444_tx_28 1 - 728897 729181 . 1 285 0 -chrXVI 728897 729370 HC_gene_9444_tx_35 1 - 728897 729370 . 1 474 0 -chrXVI 728898 729370 HC_gene_9444_tx_36 1 - 728898 729370 . 1 473 0 -chrXVI 728898 729537 HC_gene_9444_tx_17 1 - 728898 729537 . 2 488,54 0,586 -chrXVI 728899 729181 HC_gene_9444_tx_29 1 - 728899 729181 . 1 283 0 -chrXVI 728899 729370 HC_gene_9444_tx_37 1 - 728899 729370 . 1 472 0 -chrXVI 728899 729537 HC_gene_9444_tx_18 2 - 728899 729537 . 2 487,56 0,583 -chrXVI 728899 729537 HC_gene_9444_tx_19 1 - 728899 729537 . 2 487,60 0,579 -chrXVI 728900 729537 HC_gene_9444_tx_20 1 - 728900 729537 . 2 486,56 0,582 -chrXVI 728901 729370 HC_gene_9444_tx_38 4 - 728901 729370 . 1 470 0 -chrXVI 728901 729537 HC_gene_9444_tx_21 5 - 728901 729537 . 2 485,56 0,581 -chrXVI 728902 729181 HC_gene_9444_tx_30 5 - 728902 729181 . 1 280 0 -chrXVI 728902 729370 HC_gene_9444_tx_39 5 - 728902 729370 . 1 469 0 -chrXVI 728902 729537 HC_gene_9444_tx_22 3 - 728902 729537 . 2 484,56 0,580 -chrXVI 728902 729537 HC_gene_9444_tx_23 2 - 728902 729537 . 2 484,54 0,582 -chrXVI 728902 729537 HC_gene_9444_tx_24 1 - 728902 729537 . 1 636 0 -chrXVI 728991 729523 HC_gene_9052_tx_1 1 + 728991 729523 . 1 533 0 -chrXVI 729770 730301 HC_gene_9053_tx_1 223 + 729770 730301 . 1 532 0 -chrXVI 730009 730301 HC_gene_9053_tx_2 30 + 730009 730301 . 1 293 0 -chrXVI 730452 731778 HC_gene_9445_tx_1 1 - 730452 731778 . 1 1327 0 -chrXVI 730466 731193 HC_gene_9054_tx_1 98 + 730466 731193 . 1 728 0 -chrXVI 730536 731778 HC_gene_9445_tx_2 1 - 730536 731778 . 1 1243 0 -chrXVI 730641 731193 HC_gene_9054_tx_2 8 + 730641 731193 . 1 553 0 -chrXVI 730714 731193 HC_gene_9054_tx_3 14 + 730714 731193 . 1 480 0 -chrXVI 731131 731778 HC_gene_9446_tx_1 2937 - 731131 731778 . 1 648 0 -chrXVI 731131 731849 HC_gene_9446_tx_2 66 - 731131 731849 . 1 719 0 -chrXVI 732263 733329 HC_gene_9055_tx_1 266 + 732263 733329 . 1 1067 0 -chrXVI 732263 733403 HC_gene_9055_tx_2 99 + 732263 733403 . 1 1141 0 -chrXVI 732433 733329 HC_gene_9055_tx_3 29 + 732433 733329 . 1 897 0 -chrXVI 732433 733403 HC_gene_9055_tx_4 16 + 732433 733403 . 1 971 0 -chrXVI 732604 733329 HC_gene_9055_tx_5 40 + 732604 733329 . 1 726 0 -chrXVI 732604 733403 HC_gene_9055_tx_6 11 + 732604 733403 . 1 800 0 -chrXVI 732781 733329 HC_gene_9055_tx_7 31 + 732781 733329 . 1 549 0 -chrXVI 732781 733403 HC_gene_9055_tx_8 22 + 732781 733403 . 1 623 0 -chrXVI 732850 733329 HC_gene_9055_tx_9 39 + 732850 733329 . 1 480 0 -chrXVI 732850 733403 HC_gene_9055_tx_10 26 + 732850 733403 . 1 554 0 -chrXVI 733298 733906 HC_gene_9447_tx_1 5 - 733298 733906 . 1 609 0 -chrXVI 733298 734093 HC_gene_9447_tx_2 10 - 733298 734093 . 1 796 0 -chrXVI 733298 734917 HC_gene_9447_tx_3 1 - 733298 734917 . 1 1620 0 -chrXVI 733298 736712 HC_gene_9447_tx_4 4 - 733298 736712 . 1 3415 0 -chrXVI 733621 734841 LC_gene_9056_tx_1 1 + 733621 734841 . 1 1221 0 -chrXVI 736911 739634 HC_gene_9448_tx_1 1 - 736911 739634 . 2 1206,1388 0,1336 -chrXVI 736911 739634 HC_gene_9448_tx_2 7 - 736911 739634 . 1 2724 0 -chrXVI 736911 739634 HC_gene_9448_tx_3 1 - 736911 739634 . 2 1243,1379 0,1345 -chrXVI 740004 741442 HC_gene_9057_tx_1 32 + 740004 741442 . 1 1439 0 -chrXVI 740004 741442 HC_gene_9057_tx_2 1 + 740004 741442 . 2 57,1054 0,385 -chrXVI 740004 741442 HC_gene_9057_tx_3 1 + 740004 741442 . 2 187,1066 0,373 -chrXVI 740004 741442 HC_gene_9057_tx_4 1 + 740004 741442 . 2 1329,70 0,1369 -chrXVI 740231 741442 HC_gene_9057_tx_5 3 + 740231 741442 . 1 1212 0 -chrXVI 740428 741442 HC_gene_9057_tx_6 2 + 740428 741442 . 1 1015 0 -chrXVI 740479 741442 HC_gene_9057_tx_7 5 + 740479 741442 . 1 964 0 -chrXVI 741299 741660 HC_gene_9449_tx_1 8 - 741299 741660 . 1 362 0 -chrXVI 741299 741831 HC_gene_9449_tx_2 8 - 741299 741831 . 1 533 0 -chrXVI 741299 741921 HC_gene_9449_tx_3 3 - 741299 741921 . 1 623 0 -chrXVI 741299 742149 HC_gene_9449_tx_4 51 - 741299 742149 . 1 851 0 -chrXVI 742374 743444 HC_gene_9058_tx_1 2 + 742374 743444 . 1 1071 0 -chrXVI 742374 743850 HC_gene_9058_tx_2 114 + 742374 743850 . 1 1477 0 -chrXVI 742374 743850 HC_gene_9058_tx_3 1 + 742374 743850 . 2 860,549 0,928 -chrXVI 742374 743850 HC_gene_9058_tx_4 1 + 742374 743850 . 2 927,485 0,992 -chrXVI 742374 743850 HC_gene_9058_tx_5 1 + 742374 743850 . 2 875,519 0,958 -chrXVI 742374 743850 HC_gene_9058_tx_6 1 + 742374 743850 . 2 900,519 0,958 -chrXVI 742374 743850 HC_gene_9058_tx_7 1 + 742374 743850 . 2 814,552 0,925 -chrXVI 742374 743850 HC_gene_9058_tx_8 1 + 742374 743850 . 2 833,525 0,952 -chrXVI 742374 743850 HC_gene_9058_tx_9 1 + 742374 743850 . 2 831,519 0,958 -chrXVI 742374 743850 HC_gene_9058_tx_10 1 + 742374 743850 . 2 782,618 0,859 -chrXVI 742591 743850 HC_gene_9058_tx_11 12 + 742591 743850 . 1 1260 0 -chrXVI 743359 743850 HC_gene_9058_tx_12 30 + 743359 743850 . 1 492 0 -chrXVI 744615 745401 HC_gene_9059_tx_1 1 + 744615 745401 . 1 787 0 -chrXVI 744615 745407 HC_gene_9059_tx_2 1 + 744615 745407 . 1 793 0 -chrXVI 744615 745410 HC_gene_9059_tx_3 1 + 744615 745410 . 1 796 0 -chrXVI 744615 745417 HC_gene_9059_tx_4 1 + 744615 745417 . 1 803 0 -chrXVI 744615 745525 HC_gene_9059_tx_5 2 + 744615 745525 . 1 911 0 -chrXVI 744615 745533 HC_gene_9059_tx_6 1 + 744615 745533 . 1 919 0 -chrXVI 744615 745699 HC_gene_9059_tx_7 22 + 744615 745699 . 1 1085 0 -chrXVI 744980 745401 HC_gene_9059_tx_8 1 + 744980 745401 . 1 422 0 -chrXVI 744980 745540 HC_gene_9059_tx_9 1 + 744980 745540 . 1 561 0 -chrXVI 744980 745545 HC_gene_9059_tx_10 1 + 744980 745545 . 1 566 0 -chrXVI 744980 745699 HC_gene_9059_tx_11 9 + 744980 745699 . 1 720 0 -chrXVI 745610 746003 HC_gene_9450_tx_1 36 - 745610 746003 . 1 394 0 -chrXVI 745610 746114 HC_gene_9450_tx_2 42 - 745610 746114 . 1 505 0 -chrXVI 745610 746221 HC_gene_9450_tx_3 22 - 745610 746221 . 1 612 0 -chrXVI 745610 746287 HC_gene_9450_tx_4 29 - 745610 746287 . 1 678 0 -chrXVI 745610 746424 HC_gene_9450_tx_5 34 - 745610 746424 . 1 815 0 -chrXVI 745610 746550 HC_gene_9450_tx_6 36 - 745610 746550 . 1 941 0 -chrXVI 745610 746850 HC_gene_9450_tx_7 183 - 745610 746850 . 1 1241 0 -chrXVI 747281 749153 HC_gene_9060_tx_1 1 + 747281 749153 . 2 779,1039 0,834 -chrXVI 747281 749255 HC_gene_9060_tx_2 5 + 747281 749255 . 1 1975 0 -chrXVI 747281 749255 HC_gene_9060_tx_3 1 + 747281 749255 . 2 1021,904 0,1071 -chrXVI 749151 749791 HC_gene_9451_tx_1 9 - 749151 749791 . 1 641 0 -chrXVI 749151 751225 HC_gene_9451_tx_2 5 - 749151 751225 . 1 2075 0 -chrXVI 749151 751418 HC_gene_9451_tx_3 5 - 749151 751418 . 1 2268 0 -chrXVI 749151 751418 HC_gene_9451_tx_4 1 - 749151 751418 . 2 990,1165 0,1103 -chrXVI 749151 751571 HC_gene_9451_tx_5 2 - 749151 751571 . 1 2421 0 -chrXVI 749151 751972 HC_gene_9451_tx_6 11 - 749151 751972 . 1 2822 0 -chrXVI 752231 752971 HC_gene_9061_tx_1 1 + 752231 752971 . 1 741 0 -chrXVI 752231 752974 HC_gene_9061_tx_2 2 + 752231 752974 . 1 744 0 -chrXVI 752231 752975 HC_gene_9061_tx_3 2 + 752231 752975 . 1 745 0 -chrXVI 752231 752977 HC_gene_9061_tx_4 1 + 752231 752977 . 1 747 0 -chrXVI 752231 752978 HC_gene_9061_tx_5 1 + 752231 752978 . 1 748 0 -chrXVI 752231 752984 HC_gene_9061_tx_6 1 + 752231 752984 . 1 754 0 -chrXVI 752231 752987 HC_gene_9061_tx_7 1 + 752231 752987 . 1 757 0 -chrXVI 752231 752990 HC_gene_9061_tx_8 2 + 752231 752990 . 1 760 0 -chrXVI 752231 752991 HC_gene_9061_tx_9 1 + 752231 752991 . 1 761 0 -chrXVI 752231 752992 HC_gene_9061_tx_10 15 + 752231 752992 . 1 762 0 -chrXVI 752231 752994 HC_gene_9061_tx_11 4 + 752231 752994 . 1 764 0 -chrXVI 752231 752996 HC_gene_9061_tx_12 8 + 752231 752996 . 1 766 0 -chrXVI 752231 752997 HC_gene_9061_tx_13 2 + 752231 752997 . 1 767 0 -chrXVI 752231 752998 HC_gene_9061_tx_14 4 + 752231 752998 . 1 768 0 -chrXVI 752231 752999 HC_gene_9061_tx_15 1 + 752231 752999 . 1 769 0 -chrXVI 752231 753000 HC_gene_9061_tx_16 1 + 752231 753000 . 1 770 0 -chrXVI 752231 753001 HC_gene_9061_tx_17 1 + 752231 753001 . 1 771 0 -chrXVI 752231 753002 HC_gene_9061_tx_18 1 + 752231 753002 . 1 772 0 -chrXVI 752231 753003 HC_gene_9061_tx_19 2 + 752231 753003 . 1 773 0 -chrXVI 752231 753004 HC_gene_9061_tx_20 2 + 752231 753004 . 1 774 0 -chrXVI 752231 753005 HC_gene_9061_tx_21 19 + 752231 753005 . 1 775 0 -chrXVI 752231 753006 HC_gene_9061_tx_22 23 + 752231 753006 . 1 776 0 -chrXVI 752231 753007 HC_gene_9061_tx_23 5 + 752231 753007 . 1 777 0 -chrXVI 752231 753007 HC_gene_9061_tx_24 1 + 752231 753007 . 2 685,38 0,739 -chrXVI 752231 753008 HC_gene_9061_tx_25 3 + 752231 753008 . 1 778 0 -chrXVI 752231 753009 HC_gene_9061_tx_26 6 + 752231 753009 . 1 779 0 -chrXVI 752231 753010 HC_gene_9061_tx_27 1 + 752231 753010 . 1 780 0 -chrXVI 752231 753011 HC_gene_9061_tx_28 1 + 752231 753011 . 1 781 0 -chrXVI 752231 753012 HC_gene_9061_tx_29 4 + 752231 753012 . 1 782 0 -chrXVI 752231 753013 HC_gene_9061_tx_30 44 + 752231 753013 . 1 783 0 -chrXVI 752231 753014 HC_gene_9061_tx_31 7 + 752231 753014 . 1 784 0 -chrXVI 752231 753016 HC_gene_9061_tx_32 22 + 752231 753016 . 1 786 0 -chrXVI 752231 753017 HC_gene_9061_tx_33 86 + 752231 753017 . 1 787 0 -chrXVI 752231 753017 HC_gene_9061_tx_34 1 + 752231 753017 . 2 185,518 0,269 -chrXVI 752231 753018 HC_gene_9061_tx_35 7 + 752231 753018 . 1 788 0 -chrXVI 752231 753019 HC_gene_9061_tx_36 20 + 752231 753019 . 1 789 0 -chrXVI 752231 753020 HC_gene_9061_tx_37 18 + 752231 753020 . 1 790 0 -chrXVI 752231 753021 HC_gene_9061_tx_38 4 + 752231 753021 . 1 791 0 -chrXVI 752231 753022 HC_gene_9061_tx_39 1 + 752231 753022 . 1 792 0 -chrXVI 752231 753023 HC_gene_9061_tx_40 21 + 752231 753023 . 1 793 0 -chrXVI 752231 753024 HC_gene_9061_tx_41 48 + 752231 753024 . 1 794 0 -chrXVI 752231 753025 HC_gene_9061_tx_42 38 + 752231 753025 . 1 795 0 -chrXVI 752231 753026 HC_gene_9061_tx_43 1 + 752231 753026 . 1 796 0 -chrXVI 752231 753031 HC_gene_9061_tx_44 1 + 752231 753031 . 1 801 0 -chrXVI 752231 753034 HC_gene_9061_tx_45 2 + 752231 753034 . 1 804 0 -chrXVI 752231 753040 HC_gene_9061_tx_46 1 + 752231 753040 . 1 810 0 -chrXVI 752231 753044 HC_gene_9061_tx_47 1 + 752231 753044 . 1 814 0 -chrXVI 752231 753047 HC_gene_9061_tx_48 3 + 752231 753047 . 1 817 0 -chrXVI 752231 753048 HC_gene_9061_tx_49 1 + 752231 753048 . 1 818 0 -chrXVI 752231 753077 HC_gene_9061_tx_50 1 + 752231 753077 . 1 847 0 -chrXVI 752231 753082 HC_gene_9061_tx_51 1 + 752231 753082 . 1 852 0 -chrXVI 752231 753084 HC_gene_9061_tx_52 1 + 752231 753084 . 1 854 0 -chrXVI 752231 753085 HC_gene_9061_tx_53 1 + 752231 753085 . 1 855 0 -chrXVI 752231 753087 HC_gene_9061_tx_54 3 + 752231 753087 . 1 857 0 -chrXVI 752231 753088 HC_gene_9061_tx_55 1 + 752231 753088 . 1 858 0 -chrXVI 752231 753091 HC_gene_9061_tx_56 2 + 752231 753091 . 1 861 0 -chrXVI 752231 753095 HC_gene_9061_tx_57 3 + 752231 753095 . 1 865 0 -chrXVI 752231 753096 HC_gene_9061_tx_58 1 + 752231 753096 . 1 866 0 -chrXVI 752231 753097 HC_gene_9061_tx_59 2 + 752231 753097 . 1 867 0 -chrXVI 752231 753098 HC_gene_9061_tx_60 4 + 752231 753098 . 1 868 0 -chrXVI 752231 753099 HC_gene_9061_tx_61 2 + 752231 753099 . 1 869 0 -chrXVI 752231 753100 HC_gene_9061_tx_62 2 + 752231 753100 . 1 870 0 -chrXVI 752231 753101 HC_gene_9061_tx_63 1 + 752231 753101 . 1 871 0 -chrXVI 752231 753102 HC_gene_9061_tx_64 4 + 752231 753102 . 1 872 0 -chrXVI 752231 753103 HC_gene_9061_tx_65 5 + 752231 753103 . 1 873 0 -chrXVI 752231 753104 HC_gene_9061_tx_66 3 + 752231 753104 . 1 874 0 -chrXVI 752231 753105 HC_gene_9061_tx_67 6 + 752231 753105 . 1 875 0 -chrXVI 752231 753106 HC_gene_9061_tx_68 5 + 752231 753106 . 1 876 0 -chrXVI 752231 753107 HC_gene_9061_tx_69 1 + 752231 753107 . 1 877 0 -chrXVI 752231 753108 HC_gene_9061_tx_70 3 + 752231 753108 . 1 878 0 -chrXVI 752231 753112 HC_gene_9061_tx_71 1 + 752231 753112 . 1 882 0 -chrXVI 752231 753122 HC_gene_9061_tx_72 1 + 752231 753122 . 1 892 0 -chrXVI 752326 752992 HC_gene_9061_tx_73 1 + 752326 752992 . 1 667 0 -chrXVI 752326 752994 HC_gene_9061_tx_74 1 + 752326 752994 . 1 669 0 -chrXVI 752326 753003 HC_gene_9061_tx_75 1 + 752326 753003 . 1 678 0 -chrXVI 752326 753005 HC_gene_9061_tx_76 2 + 752326 753005 . 1 680 0 -chrXVI 752326 753006 HC_gene_9061_tx_77 1 + 752326 753006 . 1 681 0 -chrXVI 752326 753007 HC_gene_9061_tx_78 1 + 752326 753007 . 1 682 0 -chrXVI 752326 753009 HC_gene_9061_tx_79 1 + 752326 753009 . 1 684 0 -chrXVI 752326 753013 HC_gene_9061_tx_80 5 + 752326 753013 . 1 688 0 -chrXVI 752326 753014 HC_gene_9061_tx_81 1 + 752326 753014 . 1 689 0 -chrXVI 752326 753015 HC_gene_9061_tx_82 1 + 752326 753015 . 1 690 0 -chrXVI 752326 753017 HC_gene_9061_tx_83 6 + 752326 753017 . 1 692 0 -chrXVI 752326 753020 HC_gene_9061_tx_84 1 + 752326 753020 . 1 695 0 -chrXVI 752326 753023 HC_gene_9061_tx_85 1 + 752326 753023 . 1 698 0 -chrXVI 752326 753024 HC_gene_9061_tx_86 2 + 752326 753024 . 1 699 0 -chrXVI 752326 753025 HC_gene_9061_tx_87 1 + 752326 753025 . 1 700 0 -chrXVI 752326 753074 HC_gene_9061_tx_88 1 + 752326 753074 . 1 749 0 -chrXVI 752326 753082 HC_gene_9061_tx_89 1 + 752326 753082 . 1 757 0 -chrXVI 752326 753104 HC_gene_9061_tx_90 1 + 752326 753104 . 1 779 0 -chrXVI 752579 752977 HC_gene_9061_tx_91 1 + 752579 752977 . 1 399 0 -chrXVI 752579 752999 HC_gene_9061_tx_92 1 + 752579 752999 . 1 421 0 -chrXVI 752579 753001 HC_gene_9061_tx_93 1 + 752579 753001 . 1 423 0 -chrXVI 752579 753004 HC_gene_9061_tx_94 1 + 752579 753004 . 1 426 0 -chrXVI 752579 753005 HC_gene_9061_tx_95 2 + 752579 753005 . 1 427 0 -chrXVI 752579 753006 HC_gene_9061_tx_96 1 + 752579 753006 . 1 428 0 -chrXVI 752579 753007 HC_gene_9061_tx_97 1 + 752579 753007 . 1 429 0 -chrXVI 752579 753013 HC_gene_9061_tx_98 6 + 752579 753013 . 1 435 0 -chrXVI 752579 753016 HC_gene_9061_tx_99 2 + 752579 753016 . 1 438 0 -chrXVI 752579 753017 HC_gene_9061_tx_100 7 + 752579 753017 . 1 439 0 -chrXVI 752579 753020 HC_gene_9061_tx_101 3 + 752579 753020 . 1 442 0 -chrXVI 752579 753023 HC_gene_9061_tx_102 4 + 752579 753023 . 1 445 0 -chrXVI 752579 753024 HC_gene_9061_tx_103 4 + 752579 753024 . 1 446 0 -chrXVI 752579 753025 HC_gene_9061_tx_104 2 + 752579 753025 . 1 447 0 -chrXVI 752579 753039 HC_gene_9061_tx_105 1 + 752579 753039 . 1 461 0 -chrXVI 752579 753082 HC_gene_9061_tx_106 1 + 752579 753082 . 1 504 0 -chrXVI 752579 753101 HC_gene_9061_tx_107 1 + 752579 753101 . 1 523 0 -chrXVI 752579 753102 HC_gene_9061_tx_108 1 + 752579 753102 . 1 524 0 -chrXVI 752579 753105 HC_gene_9061_tx_109 1 + 752579 753105 . 1 527 0 -chrXVI 752579 753106 HC_gene_9061_tx_110 1 + 752579 753106 . 1 528 0 -chrXVI 752654 752994 HC_gene_9061_tx_111 1 + 752654 752994 . 1 341 0 -chrXVI 752654 752996 HC_gene_9061_tx_112 1 + 752654 752996 . 1 343 0 -chrXVI 752654 753001 HC_gene_9061_tx_113 1 + 752654 753001 . 1 348 0 -chrXVI 752654 753004 HC_gene_9061_tx_114 1 + 752654 753004 . 1 351 0 -chrXVI 752654 753006 HC_gene_9061_tx_115 1 + 752654 753006 . 1 353 0 -chrXVI 752654 753007 HC_gene_9061_tx_116 1 + 752654 753007 . 1 354 0 -chrXVI 752654 753010 HC_gene_9061_tx_117 1 + 752654 753010 . 1 357 0 -chrXVI 752654 753013 HC_gene_9061_tx_118 6 + 752654 753013 . 1 360 0 -chrXVI 752654 753016 HC_gene_9061_tx_119 2 + 752654 753016 . 1 363 0 -chrXVI 752654 753017 HC_gene_9061_tx_120 17 + 752654 753017 . 1 364 0 -chrXVI 752654 753018 HC_gene_9061_tx_121 1 + 752654 753018 . 1 365 0 -chrXVI 752654 753024 HC_gene_9061_tx_122 5 + 752654 753024 . 1 371 0 -chrXVI 752654 753025 HC_gene_9061_tx_123 8 + 752654 753025 . 1 372 0 -chrXVI 752654 753047 HC_gene_9061_tx_124 1 + 752654 753047 . 1 394 0 -chrXVI 752654 753062 HC_gene_9061_tx_125 1 + 752654 753062 . 1 409 0 -chrXVI 752654 753098 HC_gene_9061_tx_126 1 + 752654 753098 . 1 445 0 -chrXVI 752654 753102 HC_gene_9061_tx_127 1 + 752654 753102 . 1 449 0 -chrXVI 752654 753103 HC_gene_9061_tx_128 1 + 752654 753103 . 1 450 0 -chrXVI 752654 753106 HC_gene_9061_tx_129 2 + 752654 753106 . 1 453 0 -chrXVI 752654 753116 HC_gene_9061_tx_130 1 + 752654 753116 . 1 463 0 -chrXVI 752654 753122 HC_gene_9061_tx_131 1 + 752654 753122 . 1 469 0 -chrXVI 753256 754371 HC_gene_9062_tx_1 118 + 753256 754371 . 1 1116 0 -chrXVI 753391 754371 HC_gene_9062_tx_2 16 + 753391 754371 . 1 981 0 -chrXVI 753529 753844 MC_gene_9452_tx_1 1 - 753529 753844 . 1 316 0 -chrXVI 753775 754371 HC_gene_9062_tx_3 43 + 753775 754371 . 1 597 0 -chrXVI 755683 758453 HC_gene_9063_tx_1 1 + 755683 758453 . 1 2771 0 -chrXVI 756614 758228 LC_gene_9453_tx_1 1 - 756614 758228 . 1 1615 0 -chrXVI 756618 758453 HC_gene_9063_tx_2 2 + 756618 758453 . 1 1836 0 -chrXVI 758920 759462 MC_gene_9454_tx_1 1 - 758920 759462 . 1 543 0 -chrXVI 759802 760542 HC_gene_9064_tx_1 1 + 759802 760542 . 1 741 0 -chrXVI 760257 761028 HC_gene_9065_tx_1 1 + 760257 761028 . 1 772 0 -chrXVI 764201 765699 MC_gene_9066_tx_1 1 + 764201 765699 . 1 1499 0 -chrXVI 764925 765821 LC_gene_9455_tx_1 1 - 764925 765821 . 1 897 0 -chrXVI 766444 767531 MC_gene_9456_tx_1 1 - 766444 767531 . 1 1088 0 -chrXVI 767519 768991 LC_gene_9457_tx_1 1 - 767519 768991 . 1 1473 0 -chrXVI 767715 769053 HC_gene_9067_tx_1 61 + 767715 769053 . 1 1339 0 -chrXVI 768044 769053 HC_gene_9067_tx_2 7 + 768044 769053 . 1 1010 0 -chrXVI 768190 769053 HC_gene_9067_tx_3 14 + 768190 769053 . 1 864 0 -chrXVI 768361 769053 HC_gene_9067_tx_4 16 + 768361 769053 . 1 693 0 -chrXVI 768465 769053 HC_gene_9067_tx_5 11 + 768465 769053 . 1 589 0 -chrXVI 769491 770487 HC_gene_9458_tx_1 1 - 769491 770487 . 1 997 0 -chrXVI 769491 770543 HC_gene_9458_tx_2 3 - 769491 770543 . 1 1053 0 -chrXVI 769543 770074 HC_gene_9068_tx_1 137 + 769543 770074 . 1 532 0 -chrXVI 770051 770487 HC_gene_9458_tx_3 1 - 770051 770487 . 1 437 0 -chrXVI 770051 770543 HC_gene_9458_tx_4 3 - 770051 770543 . 1 493 0 -chrXVI 771257 773404 HC_gene_9069_tx_1 1 + 771257 773404 . 1 2148 0 -chrXVI 771257 773413 HC_gene_9069_tx_2 2 + 771257 773413 . 1 2157 0 -chrXVI 771257 773422 HC_gene_9069_tx_3 1 + 771257 773422 . 1 2166 0 -chrXVI 771257 773426 HC_gene_9069_tx_4 1 + 771257 773426 . 1 2170 0 -chrXVI 771257 773539 HC_gene_9069_tx_5 1 + 771257 773539 . 1 2283 0 -chrXVI 771257 773811 HC_gene_9069_tx_6 4 + 771257 773811 . 1 2555 0 -chrXVI 773729 774164 HC_gene_9459_tx_1 6 - 773729 774164 . 1 436 0 -chrXVI 773729 774265 HC_gene_9459_tx_2 15 - 773729 774265 . 1 537 0 -chrXVI 773729 775301 HC_gene_9459_tx_4 6 - 773729 775301 . 1 1573 0 -chrXVI 773729 775429 HC_gene_9459_tx_5 1 - 773729 775429 . 1 1701 0 -chrXVI 773836 774164 HC_gene_9459_tx_9 6 - 773836 774164 . 1 329 0 -chrXVI 773836 774265 HC_gene_9459_tx_3 20 - 773836 774265 . 1 430 0 -chrXVI 773836 775301 HC_gene_9459_tx_6 4 - 773836 775301 . 1 1466 0 -chrXVI 773836 775429 HC_gene_9459_tx_7 2 - 773836 775429 . 1 1594 0 -chrXVI 773836 775429 HC_gene_9459_tx_8 1 - 773836 775429 . 2 626,888 0,706 -chrXVI 774433 774691 LC_gene_9070_tx_1 1 + 774433 774691 . 1 259 0 -chrXVI 775763 776378 MC_gene_9071_tx_1 1 + 775763 776378 . 1 616 0 -chrXVI 776211 776580 HC_gene_9460_tx_1 4 - 776211 776580 . 1 370 0 -chrXVI 776211 776886 HC_gene_9460_tx_2 3 - 776211 776886 . 1 676 0 -chrXVI 776211 776959 HC_gene_9460_tx_3 7 - 776211 776959 . 1 749 0 -chrXVI 777147 777734 LC_gene_9461_tx_1 1 - 777147 777734 . 1 588 0 -chrXVI 777542 780386 HC_gene_9072_tx_1 1 + 777542 780386 . 1 2845 0 -chrXVI 780271 781129 HC_gene_9462_tx_1 1 - 780271 781129 . 1 859 0 -chrXVI 780271 781687 HC_gene_9462_tx_2 2 - 780271 781687 . 1 1417 0 -chrXVI 780475 781069 HC_gene_9073_tx_1 2 + 780475 781069 . 1 595 0 -chrXVI 780837 781465 HC_gene_9074_tx_1 1 + 780837 781465 . 1 629 0 -chrXVI 780889 781129 HC_gene_9462_tx_3 24 - 780889 781129 . 1 241 0 -chrXVI 780889 781378 HC_gene_9462_tx_4 10 - 780889 781378 . 1 490 0 -chrXVI 780889 781687 HC_gene_9462_tx_5 6 - 780889 781687 . 1 799 0 -chrXVI 781004 781129 HC_gene_9462_tx_6 1 - 781004 781129 . 1 126 0 -chrXVI 781009 781129 HC_gene_9462_tx_7 1 - 781009 781129 . 1 121 0 -chrXVI 781327 781654 HC_gene_9463_tx_1 1 - 781327 781654 . 1 328 0 -chrXVI 781327 781666 HC_gene_9463_tx_2 1 - 781327 781666 . 1 340 0 -chrXVI 781327 781668 HC_gene_9463_tx_3 1 - 781327 781668 . 1 342 0 -chrXVI 781327 781687 HC_gene_9463_tx_4 97 - 781327 781687 . 1 361 0 -chrXVI 781327 781743 HC_gene_9463_tx_5 1 - 781327 781743 . 1 417 0 -chrXVI 782000 784420 HC_gene_9075_tx_1 2 + 782000 784420 . 1 2421 0 -chrXVI 782000 784736 HC_gene_9075_tx_2 1 + 782000 784736 . 1 2737 0 -chrXVI 782023 784420 HC_gene_9075_tx_3 1 + 782023 784420 . 2 228,1961 0,437 -chrXVI 782237 784420 HC_gene_9075_tx_4 1 + 782237 784420 . 1 2184 0 -chrXVI 782401 784420 HC_gene_9075_tx_5 1 + 782401 784420 . 1 2020 0 -chrXVI 785452 785822 HC_gene_9076_tx_1 3 + 785452 785822 . 1 371 0 -chrXVI 785497 786580 LC_gene_9464_tx_1 1 - 785497 786580 . 1 1084 0 -chrXVI 786035 787018 HC_gene_9077_tx_1 1 + 786035 787018 . 1 984 0 -chrXVI 786035 787659 HC_gene_9077_tx_2 11 + 786035 787659 . 1 1625 0 -chrXVI 786035 787659 HC_gene_9077_tx_3 1 + 786035 787659 . 3 595,336,111 0,1074,1514 -chrXVI 786822 787650 HC_gene_9465_tx_1 8 - 786822 787650 . 1 829 0 -chrXVI 786913 787650 HC_gene_9465_tx_2 6 - 786913 787650 . 1 738 0 -chrXVI 786931 787512 HC_gene_9077_tx_4 2 + 786931 787512 . 1 582 0 -chrXVI 786931 787659 HC_gene_9077_tx_5 1 + 786931 787659 . 1 729 0 -chrXVI 787025 787659 HC_gene_9077_tx_6 3 + 787025 787659 . 1 635 0 -chrXVI 787293 787659 HC_gene_9077_tx_7 8 + 787293 787659 . 1 367 0 -chrXVI 787864 789511 HC_gene_9078_tx_1 68 + 787864 789511 . 1 1648 0 -chrXVI 787864 789511 HC_gene_9078_tx_2 1 + 787864 789511 . 2 934,671 0,977 -chrXVI 787864 789511 HC_gene_9078_tx_3 1 + 787864 789511 . 2 982,564 0,1084 -chrXVI 787864 789511 HC_gene_9078_tx_4 1 + 787864 789511 . 2 313,1115 0,533 -chrXVI 789053 789511 HC_gene_9078_tx_5 8 + 789053 789511 . 1 459 0 -chrXVI 789432 790373 MC_gene_9466_tx_1 1 - 789432 790373 . 1 942 0 -chrXVI 789893 791201 HC_gene_9079_tx_1 6 + 789893 791201 . 1 1309 0 -chrXVI 790037 791201 HC_gene_9079_tx_2 24 + 790037 791201 . 1 1165 0 -chrXVI 790874 791201 HC_gene_9079_tx_3 6 + 790874 791201 . 1 328 0 -chrXVI 791123 792250 HC_gene_9467_tx_1 22 - 791123 792250 . 1 1128 0 -chrXVI 791123 792437 HC_gene_9467_tx_2 3 - 791123 792437 . 1 1315 0 -chrXVI 792649 793822 HC_gene_9080_tx_1 90 + 792649 793822 . 1 1174 0 -chrXVI 792649 793822 HC_gene_9080_tx_2 1 + 792649 793822 . 2 154,960 0,214 -chrXVI 792649 793822 HC_gene_9080_tx_3 1 + 792649 793822 . 2 778,334 0,840 -chrXVI 793184 793822 HC_gene_9080_tx_4 23 + 793184 793822 . 1 639 0 -chrXVI 793565 793822 HC_gene_9080_tx_5 21 + 793565 793822 . 1 258 0 -chrXVI 793718 794080 HC_gene_9468_tx_1 6 - 793718 794080 . 1 363 0 -chrXVI 793718 794319 HC_gene_9468_tx_2 13 - 793718 794319 . 1 602 0 -chrXVI 793718 794536 HC_gene_9468_tx_3 57 - 793718 794536 . 1 819 0 -chrXVI 794940 795909 HC_gene_9081_tx_1 3962 + 794940 795909 . 2 90,515 0,455 -chrXVI 794940 795909 HC_gene_9081_tx_2 108 + 794940 795909 . 1 970 0 -chrXVI 794940 795909 HC_gene_9081_tx_3 31 + 794940 795909 . 2 94,515 0,455 -chrXVI 795481 795909 HC_gene_9081_tx_4 1421 + 795481 795909 . 1 429 0 -chrXVI 795885 797296 HC_gene_9469_tx_1 67 - 795885 797296 . 1 1412 0 -chrXVI 795885 797296 HC_gene_9469_tx_2 1 - 795885 797296 . 2 1001,231 0,1181 -chrXVI 796120 796419 LC_gene_9082_tx_1 1 + 796120 796419 . 1 300 0 -chrXVI 797523 797870 HC_gene_9083_tx_1 648 + 797523 797870 . 1 348 0 -chrXVI 797740 799031 MC_gene_9470_tx_1 1 - 797740 799031 . 1 1292 0 -chrXVI 798024 798991 HC_gene_9084_tx_1 39 + 798024 798991 . 1 968 0 -chrXVI 798273 798512 MC_gene_9470_tx_2 1 - 798273 798512 . 1 240 0 -chrXVI 799178 802059 HC_gene_9085_tx_1 5 + 799178 802059 . 1 2882 0 -chrXVI 799734 800595 MC_gene_9471_tx_1 1 - 799734 800595 . 1 862 0 -chrXVI 801408 802059 HC_gene_9085_tx_2 4 + 801408 802059 . 1 652 0 -chrXVI 801408 802135 HC_gene_9085_tx_3 1 + 801408 802135 . 1 728 0 -chrXVI 801408 802316 HC_gene_9085_tx_4 1 + 801408 802316 . 1 909 0 -chrXVI 801560 801754 MC_gene_9472_tx_1 1 - 801560 801754 . 1 195 0 -chrXVI 801627 802059 HC_gene_9085_tx_5 6 + 801627 802059 . 1 433 0 -chrXVI 802276 804227 HC_gene_9086_tx_1 44 + 802276 804227 . 1 1952 0 -chrXVI 802276 804227 HC_gene_9086_tx_2 1 + 802276 804227 . 2 306,1557 0,395 -chrXVI 802276 804227 HC_gene_9086_tx_3 1 + 802276 804227 . 2 996,790 0,1162 -chrXVI 803201 804227 HC_gene_9086_tx_4 3 + 803201 804227 . 1 1027 0 -chrXVI 804233 804560 MC_gene_9087_tx_1 1 + 804233 804560 . 1 328 0 -chrXVI 804407 810310 MC_gene_9473_tx_1 1 - 804407 810310 . 2 3351,1791 0,4113 -chrXVI 804582 805351 LC_gene_9088_tx_1 1 + 804582 805351 . 1 770 0 -chrXVI 809855 810594 MC_gene_9089_tx_1 1 + 809855 810594 . 1 740 0 -chrXVI 810447 812835 MC_gene_9090_tx_1 1 + 810447 812835 . 1 2389 0 -chrXVI 810476 811007 MC_gene_9090_tx_2 1 + 810476 811007 . 1 532 0 -chrXVI 810842 811376 HC_gene_9474_tx_1 6 - 810842 811376 . 1 535 0 -chrXVI 810842 811543 HC_gene_9474_tx_2 4 - 810842 811543 . 1 702 0 -chrXVI 810842 812443 HC_gene_9474_tx_3 2 - 810842 812443 . 1 1602 0 -chrXVI 810842 812679 HC_gene_9474_tx_4 12 - 810842 812679 . 1 1838 0 -chrXVI 810842 812679 HC_gene_9474_tx_5 1 - 810842 812679 . 2 256,1461 0,377 -chrXVI 810842 812679 HC_gene_9474_tx_6 1 - 810842 812679 . 2 398,1249 0,589 -chrXVI 810842 812679 HC_gene_9474_tx_7 1 - 810842 812679 . 2 310,1478 0,360 -chrXVI 811485 812679 HC_gene_9474_tx_8 3 - 811485 812679 . 1 1195 0 -chrXVI 812837 813171 HC_gene_9091_tx_1 1 + 812837 813171 . 1 335 0 -chrXVI 813040 813501 HC_gene_9475_tx_1 13 - 813040 813501 . 1 462 0 -chrXVI 813040 813628 HC_gene_9475_tx_2 7 - 813040 813628 . 1 589 0 -chrXVI 813040 813944 HC_gene_9475_tx_3 7 - 813040 813944 . 1 905 0 -chrXVI 813040 814117 HC_gene_9475_tx_4 56 - 813040 814117 . 1 1078 0 -chrXVI 813232 813553 MC_gene_9092_tx_1 1 + 813232 813553 . 1 322 0 -chrXVI 814300 815622 HC_gene_9093_tx_1 20 + 814300 815622 . 1 1323 0 -chrXVI 814373 815622 HC_gene_9093_tx_2 1 + 814373 815622 . 1 1250 0 -chrXVI 815563 817124 HC_gene_9476_tx_1 3 - 815563 817124 . 1 1562 0 -chrXVI 815563 817997 HC_gene_9476_tx_2 1 - 815563 817997 . 1 2435 0 -chrXVI 815563 818081 HC_gene_9476_tx_3 5 - 815563 818081 . 1 2519 0 -chrXVI 818296 819205 HC_gene_9094_tx_1 166 + 818296 819205 . 1 910 0 -chrXVI 818390 819205 HC_gene_9094_tx_2 24 + 818390 819205 . 1 816 0 -chrXVI 818564 819205 HC_gene_9094_tx_3 19 + 818564 819205 . 1 642 0 -chrXVI 818694 819205 HC_gene_9094_tx_4 21 + 818694 819205 . 1 512 0 -chrXVI 819695 821459 HC_gene_9477_tx_1 1 - 819695 821459 . 2 1367,153 0,1612 -chrXVI 819695 821459 HC_gene_9477_tx_2 25 - 819695 821459 . 1 1765 0 -chrXVI 819695 821459 HC_gene_9477_tx_3 1 - 819695 821459 . 2 724,346 0,1419 -chrXVI 819695 821459 HC_gene_9477_tx_4 1 - 819695 821459 . 2 708,993 0,772 -chrXVI 819695 821459 HC_gene_9477_tx_5 1 - 819695 821459 . 2 478,1028 0,737 -chrXVI 819695 821459 HC_gene_9477_tx_6 1 - 819695 821459 . 2 493,305 0,1460 -chrXVI 819695 821459 HC_gene_9477_tx_7 1 - 819695 821459 . 2 1166,317 0,1448 -chrXVI 819783 820451 LC_gene_9095_tx_1 1 + 819783 820451 . 1 669 0 -chrXVI 821731 822053 HC_gene_9096_tx_1 37 + 821731 822053 . 1 323 0 -chrXVI 822565 823938 HC_gene_9097_tx_1 4 + 822565 823938 . 1 1374 0 -chrXVI 822565 824379 HC_gene_9097_tx_2 29 + 822565 824379 . 1 1815 0 -chrXVI 822565 824475 HC_gene_9097_tx_3 298 + 822565 824475 . 1 1911 0 -chrXVI 822565 824475 HC_gene_9097_tx_4 1 + 822565 824475 . 2 1710,60 0,1851 -chrXVI 822565 824475 HC_gene_9097_tx_5 1 + 822565 824475 . 2 385,1327 0,584 -chrXVI 822565 824475 HC_gene_9097_tx_6 1 + 822565 824475 . 2 1775,81 0,1830 -chrXVI 822565 824475 HC_gene_9097_tx_7 1 + 822565 824475 . 2 1733,71 0,1840 -chrXVI 822565 824475 HC_gene_9097_tx_8 1 + 822565 824475 . 2 1733,69 0,1842 -chrXVI 822565 824475 HC_gene_9097_tx_9 1 + 822565 824475 . 2 1759,65 0,1846 -chrXVI 822565 824475 HC_gene_9097_tx_10 1 + 822565 824475 . 3 560,379,636 0,693,1275 -chrXVI 822565 824475 HC_gene_9097_tx_11 1 + 822565 824475 . 2 1767,44 0,1867 -chrXVI 822565 824475 HC_gene_9097_tx_12 1 + 822565 824475 . 2 1050,802 0,1109 -chrXVI 822565 824475 HC_gene_9097_tx_13 1 + 822565 824475 . 2 686,1062 0,849 -chrXVI 822585 824475 HC_gene_9097_tx_14 1 + 822585 824475 . 2 147,1511 0,380 -chrXVI 822593 824475 HC_gene_9097_tx_15 1 + 822593 824475 . 2 494,1327 0,556 -chrXVI 822651 824475 HC_gene_9097_tx_16 1 + 822651 824475 . 2 271,1139 0,686 -chrXVI 822725 824379 HC_gene_9097_tx_17 5 + 822725 824379 . 1 1655 0 -chrXVI 822725 824475 HC_gene_9097_tx_18 18 + 822725 824475 . 1 1751 0 -chrXVI 822845 824379 HC_gene_9097_tx_19 3 + 822845 824379 . 1 1535 0 -chrXVI 822845 824475 HC_gene_9097_tx_20 26 + 822845 824475 . 1 1631 0 -chrXVI 822845 824475 HC_gene_9097_tx_21 1 + 822845 824475 . 2 57,1344 0,287 -chrXVI 822845 824475 HC_gene_9097_tx_22 1 + 822845 824475 . 2 165,1092 0,539 -chrXVI 822845 824475 HC_gene_9097_tx_23 1 + 822845 824475 . 2 220,1327 0,304 -chrXVI 822912 824379 HC_gene_9097_tx_24 1 + 822912 824379 . 1 1468 0 -chrXVI 822912 824475 HC_gene_9097_tx_25 6 + 822912 824475 . 1 1564 0 -chrXVI 822971 824379 HC_gene_9097_tx_26 2 + 822971 824379 . 1 1409 0 -chrXVI 822971 824475 HC_gene_9097_tx_27 18 + 822971 824475 . 1 1505 0 -chrXVI 823076 824379 HC_gene_9097_tx_28 5 + 823076 824379 . 1 1304 0 -chrXVI 823076 824475 HC_gene_9097_tx_29 27 + 823076 824475 . 1 1400 0 -chrXVI 823328 824379 HC_gene_9097_tx_30 10 + 823328 824379 . 1 1052 0 -chrXVI 823328 824475 HC_gene_9097_tx_31 30 + 823328 824475 . 1 1148 0 -chrXVI 823328 824475 HC_gene_9097_tx_32 1 + 823328 824475 . 2 301,694 0,454 -chrXVI 823448 824379 HC_gene_9097_tx_33 3 + 823448 824379 . 1 932 0 -chrXVI 823448 824475 HC_gene_9097_tx_34 51 + 823448 824475 . 1 1028 0 -chrXVI 823589 824379 HC_gene_9097_tx_35 3 + 823589 824379 . 1 791 0 -chrXVI 823589 824379 HC_gene_9097_tx_36 1 + 823589 824379 . 2 323,376 0,415 -chrXVI 823589 824475 HC_gene_9097_tx_37 56 + 823589 824475 . 1 887 0 -chrXVI 823589 824475 HC_gene_9097_tx_38 1 + 823589 824475 . 2 373,346 0,541 -chrXVI 823700 824379 HC_gene_9097_tx_39 8 + 823700 824379 . 1 680 0 -chrXVI 823700 824475 HC_gene_9097_tx_40 81 + 823700 824475 . 1 776 0 -chrXVI 823700 824475 HC_gene_9097_tx_41 1 + 823700 824475 . 2 634,56 0,720 -chrXVI 823700 824475 HC_gene_9097_tx_42 1 + 823700 824475 . 2 598,69 0,707 -chrXVI 823700 824475 HC_gene_9097_tx_43 1 + 823700 824475 . 2 463,224 0,552 -chrXVI 823700 824475 HC_gene_9097_tx_44 1 + 823700 824475 . 2 463,206 0,570 -chrXVI 823700 824475 HC_gene_9097_tx_45 1 + 823700 824475 . 2 598,75 0,701 -chrXVI 823866 824379 HC_gene_9097_tx_46 7 + 823866 824379 . 1 514 0 -chrXVI 823866 824475 HC_gene_9097_tx_47 88 + 823866 824475 . 1 610 0 -chrXVI 823866 824475 HC_gene_9097_tx_48 1 + 823866 824475 . 2 473,93 0,517 -chrXVI 823866 824475 HC_gene_9097_tx_49 1 + 823866 824475 . 2 74,463 0,147 -chrXVI 824353 824826 HC_gene_9478_tx_1 13 - 824353 824826 . 1 474 0 -chrXVI 824353 824948 HC_gene_9478_tx_2 6 - 824353 824948 . 1 596 0 -chrXVI 824961 825512 LC_gene_9098_tx_1 1 + 824961 825512 . 1 552 0 -chrXVI 824964 826568 HC_gene_9479_tx_1 1 - 824964 826568 . 1 1605 0 -chrXVI 824964 826606 HC_gene_9479_tx_2 9 - 824964 826606 . 1 1643 0 -chrXVI 825376 826606 HC_gene_9479_tx_3 1 - 825376 826606 . 1 1231 0 -chrXVI 825401 826606 HC_gene_9479_tx_4 1 - 825401 826606 . 1 1206 0 -chrXVI 825405 826606 HC_gene_9479_tx_5 1 - 825405 826606 . 1 1202 0 -chrXVI 825409 826606 HC_gene_9479_tx_6 1 - 825409 826606 . 1 1198 0 -chrXVI 825419 826606 HC_gene_9479_tx_7 1 - 825419 826606 . 1 1188 0 -chrXVI 825427 826606 HC_gene_9479_tx_8 1 - 825427 826606 . 1 1180 0 -chrXVI 825428 826606 HC_gene_9479_tx_9 1 - 825428 826606 . 1 1179 0 -chrXVI 825434 826606 HC_gene_9479_tx_10 1 - 825434 826606 . 2 833,264 0,909 -chrXVI 825434 826606 HC_gene_9479_tx_11 5 - 825434 826606 . 1 1173 0 -chrXVI 825436 826606 HC_gene_9479_tx_12 5 - 825436 826606 . 1 1171 0 -chrXVI 825437 826606 HC_gene_9479_tx_13 1 - 825437 826606 . 1 1170 0 -chrXVI 825438 826606 HC_gene_9479_tx_14 1 - 825438 826606 . 1 1169 0 -chrXVI 825439 826606 HC_gene_9479_tx_15 1 - 825439 826606 . 1 1168 0 -chrXVI 825442 826606 HC_gene_9479_tx_16 1 - 825442 826606 . 1 1165 0 -chrXVI 825447 826606 HC_gene_9479_tx_17 2 - 825447 826606 . 1 1160 0 -chrXVI 825448 826606 HC_gene_9479_tx_18 3 - 825448 826606 . 1 1159 0 -chrXVI 825449 826606 HC_gene_9479_tx_19 6 - 825449 826606 . 1 1158 0 -chrXVI 825451 826606 HC_gene_9479_tx_20 1 - 825451 826606 . 1 1156 0 -chrXVI 826710 827279 HC_gene_9480_tx_1 34 - 826710 827279 . 1 570 0 -chrXVI 826710 827449 HC_gene_9480_tx_2 25 - 826710 827449 . 1 740 0 -chrXVI 826710 827569 HC_gene_9480_tx_3 28 - 826710 827569 . 1 860 0 -chrXVI 826710 827776 HC_gene_9480_tx_4 12 - 826710 827776 . 1 1067 0 -chrXVI 826710 828215 HC_gene_9480_tx_5 76 - 826710 828215 . 1 1506 0 -chrXVI 826710 828215 HC_gene_9480_tx_6 1 - 826710 828215 . 2 660,792 0,714 -chrXVI 826710 828215 HC_gene_9480_tx_7 1 - 826710 828215 . 2 248,709 0,797 -chrXVI 828069 828302 LC_gene_9099_tx_1 1 + 828069 828302 . 1 234 0 -chrXVI 828387 829049 HC_gene_9481_tx_1 1 - 828387 829049 . 1 663 0 -chrXVI 828387 829133 HC_gene_9481_tx_2 1 - 828387 829133 . 1 747 0 -chrXVI 828443 828740 HC_gene_9481_tx_4 2 - 828443 828740 . 1 298 0 -chrXVI 828443 829049 HC_gene_9481_tx_3 3 - 828443 829049 . 1 607 0 -chrXVI 828443 829517 HC_gene_9481_tx_5 1 - 828443 829517 . 1 1075 0 -chrXVI 828443 830421 HC_gene_9481_tx_6 2 - 828443 830421 . 1 1979 0 -chrXVI 829456 830799 HC_gene_9100_tx_1 1 + 829456 830799 . 1 1344 0 -chrXVI 829477 830813 HC_gene_9100_tx_2 1 + 829477 830813 . 1 1337 0 -chrXVI 829602 830813 HC_gene_9100_tx_3 1 + 829602 830813 . 1 1212 0 -chrXVI 829634 830812 HC_gene_9100_tx_4 1 + 829634 830812 . 1 1179 0 -chrXVI 829691 830811 HC_gene_9100_tx_5 1 + 829691 830811 . 1 1121 0 -chrXVI 829691 830821 HC_gene_9100_tx_6 1 + 829691 830821 . 1 1131 0 -chrXVI 829706 830813 HC_gene_9100_tx_7 1 + 829706 830813 . 1 1108 0 -chrXVI 829708 830815 HC_gene_9100_tx_8 1 + 829708 830815 . 1 1108 0 -chrXVI 829708 830824 HC_gene_9100_tx_9 1 + 829708 830824 . 1 1117 0 -chrXVI 829709 830824 HC_gene_9100_tx_10 1 + 829709 830824 . 1 1116 0 -chrXVI 829717 830813 HC_gene_9100_tx_11 1 + 829717 830813 . 1 1097 0 -chrXVI 829730 830812 HC_gene_9100_tx_12 1 + 829730 830812 . 1 1083 0 -chrXVI 829734 830812 HC_gene_9100_tx_13 1 + 829734 830812 . 1 1079 0 -chrXVI 829735 830819 HC_gene_9100_tx_14 1 + 829735 830819 . 1 1085 0 -chrXVI 829736 830813 HC_gene_9100_tx_15 1 + 829736 830813 . 1 1078 0 -chrXVI 829736 830819 HC_gene_9100_tx_16 1 + 829736 830819 . 1 1084 0 -chrXVI 829736 830824 HC_gene_9100_tx_17 1 + 829736 830824 . 1 1089 0 -chrXVI 829737 830814 HC_gene_9100_tx_18 1 + 829737 830814 . 1 1078 0 -chrXVI 829737 830816 HC_gene_9100_tx_19 1 + 829737 830816 . 1 1080 0 -chrXVI 829737 830819 HC_gene_9100_tx_20 1 + 829737 830819 . 1 1083 0 -chrXVI 829737 830821 HC_gene_9100_tx_21 1 + 829737 830821 . 1 1085 0 -chrXVI 829737 830824 HC_gene_9100_tx_22 2 + 829737 830824 . 1 1088 0 -chrXVI 829738 830812 HC_gene_9100_tx_23 1 + 829738 830812 . 1 1075 0 -chrXVI 829738 830813 HC_gene_9100_tx_24 2 + 829738 830813 . 1 1076 0 -chrXVI 829739 830811 HC_gene_9100_tx_25 1 + 829739 830811 . 1 1073 0 -chrXVI 829741 830811 HC_gene_9100_tx_26 1 + 829741 830811 . 1 1071 0 -chrXVI 829741 830813 HC_gene_9100_tx_27 2 + 829741 830813 . 1 1073 0 -chrXVI 829744 830812 HC_gene_9100_tx_28 1 + 829744 830812 . 1 1069 0 -chrXVI 829744 830813 HC_gene_9100_tx_29 2 + 829744 830813 . 1 1070 0 -chrXVI 829745 830811 HC_gene_9100_tx_30 1 + 829745 830811 . 1 1067 0 -chrXVI 829745 830813 HC_gene_9100_tx_31 2 + 829745 830813 . 1 1069 0 -chrXVI 829745 830814 HC_gene_9100_tx_32 1 + 829745 830814 . 1 1070 0 -chrXVI 829746 830811 HC_gene_9100_tx_33 5 + 829746 830811 . 1 1066 0 -chrXVI 829746 830812 HC_gene_9100_tx_34 1 + 829746 830812 . 1 1067 0 -chrXVI 829746 830813 HC_gene_9100_tx_35 7 + 829746 830813 . 1 1068 0 -chrXVI 829746 830815 HC_gene_9100_tx_36 2 + 829746 830815 . 1 1070 0 -chrXVI 829746 830822 HC_gene_9100_tx_37 1 + 829746 830822 . 1 1077 0 -chrXVI 829746 830824 HC_gene_9100_tx_38 6 + 829746 830824 . 1 1079 0 -chrXVI 829746 830826 HC_gene_9100_tx_39 1 + 829746 830826 . 1 1081 0 -chrXVI 829747 830810 HC_gene_9100_tx_40 1 + 829747 830810 . 1 1064 0 -chrXVI 829747 830812 HC_gene_9100_tx_41 1 + 829747 830812 . 1 1066 0 -chrXVI 829747 830813 HC_gene_9100_tx_42 1 + 829747 830813 . 1 1067 0 -chrXVI 829747 830821 HC_gene_9100_tx_43 1 + 829747 830821 . 1 1075 0 -chrXVI 829748 830813 HC_gene_9100_tx_44 2 + 829748 830813 . 1 1066 0 -chrXVI 829748 830814 HC_gene_9100_tx_45 1 + 829748 830814 . 1 1067 0 -chrXVI 829748 830824 HC_gene_9100_tx_46 1 + 829748 830824 . 1 1077 0 -chrXVI 829749 830813 HC_gene_9100_tx_47 2 + 829749 830813 . 1 1065 0 -chrXVI 829749 830824 HC_gene_9100_tx_48 2 + 829749 830824 . 1 1076 0 -chrXVI 829750 830808 HC_gene_9100_tx_49 1 + 829750 830808 . 1 1059 0 -chrXVI 829750 830811 HC_gene_9100_tx_50 2 + 829750 830811 . 1 1062 0 -chrXVI 829750 830813 HC_gene_9100_tx_51 2 + 829750 830813 . 1 1064 0 -chrXVI 829750 830818 HC_gene_9100_tx_52 1 + 829750 830818 . 1 1069 0 -chrXVI 829750 830819 HC_gene_9100_tx_53 1 + 829750 830819 . 1 1070 0 -chrXVI 829750 830823 HC_gene_9100_tx_54 1 + 829750 830823 . 1 1074 0 -chrXVI 829750 830824 HC_gene_9100_tx_55 1 + 829750 830824 . 1 1075 0 -chrXVI 829751 830813 HC_gene_9100_tx_56 1 + 829751 830813 . 1 1063 0 -chrXVI 829751 830824 HC_gene_9100_tx_57 1 + 829751 830824 . 1 1074 0 -chrXVI 829752 830810 HC_gene_9100_tx_58 1 + 829752 830810 . 1 1059 0 -chrXVI 829752 830812 HC_gene_9100_tx_59 2 + 829752 830812 . 1 1061 0 -chrXVI 829752 830813 HC_gene_9100_tx_60 1 + 829752 830813 . 1 1062 0 -chrXVI 829752 830819 HC_gene_9100_tx_61 1 + 829752 830819 . 1 1068 0 -chrXVI 829752 830821 HC_gene_9100_tx_62 1 + 829752 830821 . 1 1070 0 -chrXVI 829753 830747 HC_gene_9100_tx_63 2 + 829753 830747 . 1 995 0 -chrXVI 829753 830748 HC_gene_9100_tx_64 2 + 829753 830748 . 1 996 0 -chrXVI 829753 830749 HC_gene_9100_tx_65 2 + 829753 830749 . 1 997 0 -chrXVI 829753 830750 HC_gene_9100_tx_66 1 + 829753 830750 . 1 998 0 -chrXVI 829753 830752 HC_gene_9100_tx_67 3 + 829753 830752 . 1 1000 0 -chrXVI 829753 830754 HC_gene_9100_tx_68 3 + 829753 830754 . 1 1002 0 -chrXVI 829753 830759 HC_gene_9100_tx_69 1 + 829753 830759 . 1 1007 0 -chrXVI 829753 830760 HC_gene_9100_tx_70 2 + 829753 830760 . 1 1008 0 -chrXVI 829753 830763 HC_gene_9100_tx_71 2 + 829753 830763 . 1 1011 0 -chrXVI 829753 830764 HC_gene_9100_tx_72 5 + 829753 830764 . 1 1012 0 -chrXVI 829753 830765 HC_gene_9100_tx_73 4 + 829753 830765 . 1 1013 0 -chrXVI 829753 830766 HC_gene_9100_tx_74 2 + 829753 830766 . 1 1014 0 -chrXVI 829753 830767 HC_gene_9100_tx_75 2 + 829753 830767 . 1 1015 0 -chrXVI 829753 830768 HC_gene_9100_tx_76 2 + 829753 830768 . 1 1016 0 -chrXVI 829753 830769 HC_gene_9100_tx_77 3 + 829753 830769 . 1 1017 0 -chrXVI 829753 830770 HC_gene_9100_tx_78 7 + 829753 830770 . 1 1018 0 -chrXVI 829753 830770 HC_gene_9100_tx_79 1 + 829753 830770 . 2 786,81 0,937 -chrXVI 829753 830770 HC_gene_9100_tx_80 1 + 829753 830770 . 2 864,81 0,937 -chrXVI 829753 830771 HC_gene_9100_tx_81 18 + 829753 830771 . 1 1019 0 -chrXVI 829753 830772 HC_gene_9100_tx_82 6 + 829753 830772 . 1 1020 0 -chrXVI 829753 830773 HC_gene_9100_tx_83 1 + 829753 830773 . 1 1021 0 -chrXVI 829753 830774 HC_gene_9100_tx_84 2 + 829753 830774 . 1 1022 0 -chrXVI 829753 830775 HC_gene_9100_tx_85 9 + 829753 830775 . 1 1023 0 -chrXVI 829753 830776 HC_gene_9100_tx_86 7 + 829753 830776 . 1 1024 0 -chrXVI 829753 830778 HC_gene_9100_tx_87 1 + 829753 830778 . 1 1026 0 -chrXVI 829753 830779 HC_gene_9100_tx_88 2 + 829753 830779 . 1 1027 0 -chrXVI 829753 830781 HC_gene_9100_tx_89 2 + 829753 830781 . 1 1029 0 -chrXVI 829753 830782 HC_gene_9100_tx_90 4 + 829753 830782 . 1 1030 0 -chrXVI 829753 830783 HC_gene_9100_tx_91 1 + 829753 830783 . 1 1031 0 -chrXVI 829753 830784 HC_gene_9100_tx_92 5 + 829753 830784 . 1 1032 0 -chrXVI 829753 830785 HC_gene_9100_tx_93 1 + 829753 830785 . 1 1033 0 -chrXVI 829753 830787 HC_gene_9100_tx_94 4 + 829753 830787 . 1 1035 0 -chrXVI 829753 830788 HC_gene_9100_tx_95 2 + 829753 830788 . 1 1036 0 -chrXVI 829753 830789 HC_gene_9100_tx_96 16 + 829753 830789 . 1 1037 0 -chrXVI 829753 830790 HC_gene_9100_tx_97 4 + 829753 830790 . 1 1038 0 -chrXVI 829753 830791 HC_gene_9100_tx_98 3 + 829753 830791 . 1 1039 0 -chrXVI 829753 830793 HC_gene_9100_tx_99 1 + 829753 830793 . 1 1041 0 -chrXVI 829753 830794 HC_gene_9100_tx_100 8 + 829753 830794 . 1 1042 0 -chrXVI 829753 830795 HC_gene_9100_tx_101 3 + 829753 830795 . 1 1043 0 -chrXVI 829753 830796 HC_gene_9100_tx_102 6 + 829753 830796 . 1 1044 0 -chrXVI 829753 830797 HC_gene_9100_tx_103 6 + 829753 830797 . 1 1045 0 -chrXVI 829753 830798 HC_gene_9100_tx_104 1 + 829753 830798 . 1 1046 0 -chrXVI 829753 830799 HC_gene_9100_tx_105 15 + 829753 830799 . 1 1047 0 -chrXVI 829753 830800 HC_gene_9100_tx_106 8 + 829753 830800 . 1 1048 0 -chrXVI 829753 830801 HC_gene_9100_tx_107 12 + 829753 830801 . 1 1049 0 -chrXVI 829753 830802 HC_gene_9100_tx_108 19 + 829753 830802 . 1 1050 0 -chrXVI 829753 830802 HC_gene_9100_tx_109 1 + 829753 830802 . 2 925,48 0,1002 -chrXVI 829753 830803 HC_gene_9100_tx_110 17 + 829753 830803 . 1 1051 0 -chrXVI 829753 830804 HC_gene_9100_tx_111 6 + 829753 830804 . 1 1052 0 -chrXVI 829753 830805 HC_gene_9100_tx_112 2 + 829753 830805 . 1 1053 0 -chrXVI 829753 830806 HC_gene_9100_tx_113 2 + 829753 830806 . 1 1054 0 -chrXVI 829753 830811 HC_gene_9100_tx_114 1 + 829753 830811 . 2 95,834 0,225 -chrXVI 829753 830812 HC_gene_9100_tx_115 1 + 829753 830812 . 2 143,402 0,658 -chrXVI 829753 830828 HC_gene_9100_tx_116 7 + 829753 830828 . 1 1076 0 -chrXVI 829753 830830 HC_gene_9100_tx_117 6 + 829753 830830 . 1 1078 0 -chrXVI 829753 830832 HC_gene_9100_tx_118 3 + 829753 830832 . 1 1080 0 -chrXVI 829753 830833 HC_gene_9100_tx_119 1 + 829753 830833 . 1 1081 0 -chrXVI 829753 830835 HC_gene_9100_tx_120 7 + 829753 830835 . 1 1083 0 -chrXVI 829753 830847 HC_gene_9100_tx_121 1 + 829753 830847 . 1 1095 0 -chrXVI 829753 830849 HC_gene_9100_tx_122 1 + 829753 830849 . 1 1097 0 -chrXVI 829753 830850 HC_gene_9100_tx_123 1 + 829753 830850 . 1 1098 0 -chrXVI 829753 830851 HC_gene_9100_tx_124 1 + 829753 830851 . 2 335,550 0,549 -chrXVI 829753 830855 HC_gene_9100_tx_125 1 + 829753 830855 . 1 1103 0 -chrXVI 829753 830858 HC_gene_9100_tx_126 1 + 829753 830858 . 1 1106 0 -chrXVI 829753 830860 HC_gene_9100_tx_127 1 + 829753 830860 . 1 1108 0 -chrXVI 829753 830873 HC_gene_9100_tx_128 1 + 829753 830873 . 1 1121 0 -chrXVI 829753 830875 HC_gene_9100_tx_129 1 + 829753 830875 . 1 1123 0 -chrXVI 829753 830879 HC_gene_9100_tx_130 1 + 829753 830879 . 1 1127 0 -chrXVI 829753 830890 HC_gene_9100_tx_131 2 + 829753 830890 . 1 1138 0 -chrXVI 829753 830892 HC_gene_9100_tx_132 2 + 829753 830892 . 1 1140 0 -chrXVI 829753 830958 HC_gene_9100_tx_133 3 + 829753 830958 . 1 1206 0 -chrXVI 829753 831062 HC_gene_9100_tx_134 8 + 829753 831062 . 1 1310 0 -chrXVI 829753 831062 HC_gene_9100_tx_135 1 + 829753 831062 . 2 493,761 0,549 -chrXVI 829754 830811 HC_gene_9100_tx_136 1 + 829754 830811 . 1 1058 0 -chrXVI 829754 830815 HC_gene_9100_tx_137 1 + 829754 830815 . 1 1062 0 -chrXVI 829754 830822 HC_gene_9100_tx_138 1 + 829754 830822 . 1 1069 0 -chrXVI 829757 830811 HC_gene_9100_tx_139 1 + 829757 830811 . 1 1055 0 -chrXVI 829758 830815 HC_gene_9100_tx_140 1 + 829758 830815 . 1 1058 0 -chrXVI 829758 830825 HC_gene_9100_tx_141 1 + 829758 830825 . 1 1068 0 -chrXVI 829759 830807 HC_gene_9100_tx_142 1 + 829759 830807 . 1 1049 0 -chrXVI 829759 830811 HC_gene_9100_tx_143 1 + 829759 830811 . 1 1053 0 -chrXVI 829759 830813 HC_gene_9100_tx_144 5 + 829759 830813 . 1 1055 0 -chrXVI 829759 830814 HC_gene_9100_tx_145 2 + 829759 830814 . 1 1056 0 -chrXVI 829759 830817 HC_gene_9100_tx_146 1 + 829759 830817 . 1 1059 0 -chrXVI 829759 830819 HC_gene_9100_tx_147 2 + 829759 830819 . 1 1061 0 -chrXVI 829759 830820 HC_gene_9100_tx_148 1 + 829759 830820 . 1 1062 0 -chrXVI 829759 830824 HC_gene_9100_tx_149 5 + 829759 830824 . 1 1066 0 -chrXVI 829760 830810 HC_gene_9100_tx_150 1 + 829760 830810 . 1 1051 0 -chrXVI 829760 830811 HC_gene_9100_tx_151 2 + 829760 830811 . 1 1052 0 -chrXVI 829760 830812 HC_gene_9100_tx_152 2 + 829760 830812 . 1 1053 0 -chrXVI 829760 830813 HC_gene_9100_tx_153 5 + 829760 830813 . 1 1054 0 -chrXVI 829760 830817 HC_gene_9100_tx_154 1 + 829760 830817 . 1 1058 0 -chrXVI 829760 830818 HC_gene_9100_tx_155 1 + 829760 830818 . 1 1059 0 -chrXVI 829760 830820 HC_gene_9100_tx_156 1 + 829760 830820 . 1 1061 0 -chrXVI 829760 830822 HC_gene_9100_tx_157 2 + 829760 830822 . 1 1063 0 -chrXVI 829760 830824 HC_gene_9100_tx_158 5 + 829760 830824 . 1 1065 0 -chrXVI 829761 830811 HC_gene_9100_tx_159 1 + 829761 830811 . 1 1051 0 -chrXVI 829761 830813 HC_gene_9100_tx_160 3 + 829761 830813 . 1 1053 0 -chrXVI 829761 830815 HC_gene_9100_tx_161 1 + 829761 830815 . 1 1055 0 -chrXVI 829761 830822 HC_gene_9100_tx_162 1 + 829761 830822 . 1 1062 0 -chrXVI 829762 830813 HC_gene_9100_tx_163 1 + 829762 830813 . 1 1052 0 -chrXVI 829763 830824 HC_gene_9100_tx_164 2 + 829763 830824 . 1 1062 0 -chrXVI 829764 830812 HC_gene_9100_tx_165 2 + 829764 830812 . 1 1049 0 -chrXVI 829764 830823 HC_gene_9100_tx_166 1 + 829764 830823 . 1 1060 0 -chrXVI 829765 830815 HC_gene_9100_tx_167 1 + 829765 830815 . 1 1051 0 -chrXVI 829765 830822 HC_gene_9100_tx_168 1 + 829765 830822 . 1 1058 0 -chrXVI 829766 830812 HC_gene_9100_tx_169 3 + 829766 830812 . 1 1047 0 -chrXVI 829766 830813 HC_gene_9100_tx_170 5 + 829766 830813 . 1 1048 0 -chrXVI 829766 830819 HC_gene_9100_tx_171 2 + 829766 830819 . 1 1054 0 -chrXVI 829766 830822 HC_gene_9100_tx_172 2 + 829766 830822 . 1 1057 0 -chrXVI 829766 830824 HC_gene_9100_tx_173 2 + 829766 830824 . 1 1059 0 -chrXVI 829767 830813 HC_gene_9100_tx_174 2 + 829767 830813 . 1 1047 0 -chrXVI 829767 830814 HC_gene_9100_tx_175 1 + 829767 830814 . 1 1048 0 -chrXVI 829767 830817 HC_gene_9100_tx_176 1 + 829767 830817 . 1 1051 0 -chrXVI 829767 830819 HC_gene_9100_tx_177 1 + 829767 830819 . 1 1053 0 -chrXVI 829768 830813 HC_gene_9100_tx_178 1 + 829768 830813 . 1 1046 0 -chrXVI 829768 830816 HC_gene_9100_tx_179 1 + 829768 830816 . 1 1049 0 -chrXVI 829768 830819 HC_gene_9100_tx_180 1 + 829768 830819 . 1 1052 0 -chrXVI 829769 830812 HC_gene_9100_tx_181 1 + 829769 830812 . 1 1044 0 -chrXVI 829769 830813 HC_gene_9100_tx_182 4 + 829769 830813 . 1 1045 0 -chrXVI 829769 830820 HC_gene_9100_tx_183 1 + 829769 830820 . 1 1052 0 -chrXVI 829769 830822 HC_gene_9100_tx_184 1 + 829769 830822 . 1 1054 0 -chrXVI 829769 830823 HC_gene_9100_tx_185 1 + 829769 830823 . 1 1055 0 -chrXVI 829769 830824 HC_gene_9100_tx_186 2 + 829769 830824 . 1 1056 0 -chrXVI 829770 830813 HC_gene_9100_tx_187 1 + 829770 830813 . 1 1044 0 -chrXVI 829770 830821 HC_gene_9100_tx_188 1 + 829770 830821 . 1 1052 0 -chrXVI 829770 830824 HC_gene_9100_tx_189 1 + 829770 830824 . 1 1055 0 -chrXVI 829771 830813 HC_gene_9100_tx_190 1 + 829771 830813 . 1 1043 0 -chrXVI 829772 830812 HC_gene_9100_tx_191 1 + 829772 830812 . 1 1041 0 -chrXVI 829772 830813 HC_gene_9100_tx_192 6 + 829772 830813 . 1 1042 0 -chrXVI 829772 830814 HC_gene_9100_tx_193 1 + 829772 830814 . 1 1043 0 -chrXVI 829772 830819 HC_gene_9100_tx_194 2 + 829772 830819 . 1 1048 0 -chrXVI 829772 830824 HC_gene_9100_tx_195 3 + 829772 830824 . 1 1053 0 -chrXVI 829772 830826 HC_gene_9100_tx_196 1 + 829772 830826 . 1 1055 0 -chrXVI 829773 830813 HC_gene_9100_tx_197 1 + 829773 830813 . 1 1041 0 -chrXVI 829773 830814 HC_gene_9100_tx_198 1 + 829773 830814 . 1 1042 0 -chrXVI 829773 830820 HC_gene_9100_tx_199 1 + 829773 830820 . 1 1048 0 -chrXVI 829773 830824 HC_gene_9100_tx_200 2 + 829773 830824 . 1 1052 0 -chrXVI 829775 830811 HC_gene_9100_tx_201 1 + 829775 830811 . 1 1037 0 -chrXVI 829775 830814 HC_gene_9100_tx_202 1 + 829775 830814 . 1 1040 0 -chrXVI 829776 830812 HC_gene_9100_tx_203 1 + 829776 830812 . 1 1037 0 -chrXVI 829776 830813 HC_gene_9100_tx_204 3 + 829776 830813 . 1 1038 0 -chrXVI 829776 830814 HC_gene_9100_tx_205 1 + 829776 830814 . 1 1039 0 -chrXVI 829776 830815 HC_gene_9100_tx_206 1 + 829776 830815 . 1 1040 0 -chrXVI 829776 830820 HC_gene_9100_tx_207 1 + 829776 830820 . 1 1045 0 -chrXVI 829777 830815 HC_gene_9100_tx_208 1 + 829777 830815 . 1 1039 0 -chrXVI 829778 830811 HC_gene_9100_tx_209 1 + 829778 830811 . 1 1034 0 -chrXVI 829778 830813 HC_gene_9100_tx_210 3 + 829778 830813 . 1 1036 0 -chrXVI 829778 830821 HC_gene_9100_tx_211 1 + 829778 830821 . 1 1044 0 -chrXVI 829780 830823 HC_gene_9100_tx_212 1 + 829780 830823 . 1 1044 0 -chrXVI 829781 830820 HC_gene_9100_tx_213 1 + 829781 830820 . 1 1040 0 -chrXVI 829783 830813 HC_gene_9100_tx_214 1 + 829783 830813 . 1 1031 0 -chrXVI 829784 830814 HC_gene_9100_tx_215 1 + 829784 830814 . 1 1031 0 -chrXVI 829784 830819 HC_gene_9100_tx_216 1 + 829784 830819 . 1 1036 0 -chrXVI 829785 830810 HC_gene_9100_tx_217 1 + 829785 830810 . 1 1026 0 -chrXVI 829785 830824 HC_gene_9100_tx_218 1 + 829785 830824 . 1 1040 0 -chrXVI 829786 830812 HC_gene_9100_tx_219 1 + 829786 830812 . 1 1027 0 -chrXVI 829786 830824 HC_gene_9100_tx_220 1 + 829786 830824 . 1 1039 0 -chrXVI 829789 830813 HC_gene_9100_tx_221 1 + 829789 830813 . 1 1025 0 -chrXVI 829793 830813 HC_gene_9100_tx_222 1 + 829793 830813 . 1 1021 0 -chrXVI 829793 830824 HC_gene_9100_tx_223 1 + 829793 830824 . 1 1032 0 -chrXVI 829799 830821 HC_gene_9100_tx_224 1 + 829799 830821 . 1 1023 0 -chrXVI 829871 830813 HC_gene_9100_tx_225 1 + 829871 830813 . 1 943 0 -chrXVI 829872 830812 HC_gene_9100_tx_226 1 + 829872 830812 . 1 941 0 -chrXVI 829885 830813 HC_gene_9100_tx_227 2 + 829885 830813 . 1 929 0 -chrXVI 829887 830813 HC_gene_9100_tx_228 1 + 829887 830813 . 1 927 0 -chrXVI 829888 830812 HC_gene_9100_tx_229 1 + 829888 830812 . 1 925 0 -chrXVI 829888 830815 HC_gene_9100_tx_230 1 + 829888 830815 . 1 928 0 -chrXVI 829888 830821 HC_gene_9100_tx_231 1 + 829888 830821 . 1 934 0 -chrXVI 829888 830824 HC_gene_9100_tx_232 2 + 829888 830824 . 1 937 0 -chrXVI 829892 830812 HC_gene_9100_tx_233 1 + 829892 830812 . 1 921 0 -chrXVI 829892 830824 HC_gene_9100_tx_234 1 + 829892 830824 . 1 933 0 -chrXVI 829900 830768 HC_gene_9100_tx_235 2 + 829900 830768 . 1 869 0 -chrXVI 829900 830771 HC_gene_9100_tx_236 2 + 829900 830771 . 1 872 0 -chrXVI 829900 830775 HC_gene_9100_tx_237 1 + 829900 830775 . 1 876 0 -chrXVI 829900 830776 HC_gene_9100_tx_238 3 + 829900 830776 . 1 877 0 -chrXVI 829900 830783 HC_gene_9100_tx_239 2 + 829900 830783 . 1 884 0 -chrXVI 829900 830784 HC_gene_9100_tx_240 1 + 829900 830784 . 1 885 0 -chrXVI 829900 830786 HC_gene_9100_tx_241 1 + 829900 830786 . 1 887 0 -chrXVI 829900 830789 HC_gene_9100_tx_242 4 + 829900 830789 . 1 890 0 -chrXVI 829900 830790 HC_gene_9100_tx_243 1 + 829900 830790 . 1 891 0 -chrXVI 829900 830791 HC_gene_9100_tx_244 1 + 829900 830791 . 1 892 0 -chrXVI 829900 830794 HC_gene_9100_tx_245 3 + 829900 830794 . 1 895 0 -chrXVI 829900 830796 HC_gene_9100_tx_246 2 + 829900 830796 . 1 897 0 -chrXVI 829900 830797 HC_gene_9100_tx_247 1 + 829900 830797 . 1 898 0 -chrXVI 829900 830799 HC_gene_9100_tx_248 3 + 829900 830799 . 1 900 0 -chrXVI 829900 830800 HC_gene_9100_tx_249 2 + 829900 830800 . 1 901 0 -chrXVI 829900 830801 HC_gene_9100_tx_250 1 + 829900 830801 . 1 902 0 -chrXVI 829900 830802 HC_gene_9100_tx_251 2 + 829900 830802 . 1 903 0 -chrXVI 829900 830803 HC_gene_9100_tx_252 2 + 829900 830803 . 1 904 0 -chrXVI 829900 830827 HC_gene_9100_tx_253 2 + 829900 830827 . 1 928 0 -chrXVI 829900 830828 HC_gene_9100_tx_254 2 + 829900 830828 . 1 929 0 -chrXVI 829900 830830 HC_gene_9100_tx_255 2 + 829900 830830 . 1 931 0 -chrXVI 829900 830832 HC_gene_9100_tx_256 1 + 829900 830832 . 1 933 0 -chrXVI 829900 830845 HC_gene_9100_tx_257 1 + 829900 830845 . 1 946 0 -chrXVI 829900 830849 HC_gene_9100_tx_258 1 + 829900 830849 . 1 950 0 -chrXVI 829900 830850 HC_gene_9100_tx_259 1 + 829900 830850 . 1 951 0 -chrXVI 829900 830860 HC_gene_9100_tx_260 1 + 829900 830860 . 1 961 0 -chrXVI 829900 830890 HC_gene_9100_tx_261 1 + 829900 830890 . 1 991 0 -chrXVI 829902 830812 HC_gene_9100_tx_262 1 + 829902 830812 . 1 911 0 -chrXVI 829902 830813 HC_gene_9100_tx_263 1 + 829902 830813 . 1 912 0 -chrXVI 830173 830751 HC_gene_9100_tx_264 1 + 830173 830751 . 1 579 0 -chrXVI 830173 830764 HC_gene_9100_tx_265 1 + 830173 830764 . 1 592 0 -chrXVI 830173 830765 HC_gene_9100_tx_266 1 + 830173 830765 . 1 593 0 -chrXVI 830173 830767 HC_gene_9100_tx_267 1 + 830173 830767 . 1 595 0 -chrXVI 830173 830771 HC_gene_9100_tx_268 3 + 830173 830771 . 1 599 0 -chrXVI 830173 830773 HC_gene_9100_tx_269 1 + 830173 830773 . 1 601 0 -chrXVI 830173 830775 HC_gene_9100_tx_270 1 + 830173 830775 . 1 603 0 -chrXVI 830173 830780 HC_gene_9100_tx_271 1 + 830173 830780 . 1 608 0 -chrXVI 830173 830789 HC_gene_9100_tx_272 4 + 830173 830789 . 1 617 0 -chrXVI 830173 830799 HC_gene_9100_tx_273 2 + 830173 830799 . 1 627 0 -chrXVI 830173 830802 HC_gene_9100_tx_274 1 + 830173 830802 . 1 630 0 -chrXVI 830173 830803 HC_gene_9100_tx_275 1 + 830173 830803 . 1 631 0 -chrXVI 830173 830804 HC_gene_9100_tx_276 2 + 830173 830804 . 1 632 0 -chrXVI 830173 830830 HC_gene_9100_tx_277 1 + 830173 830830 . 1 658 0 -chrXVI 830174 830813 HC_gene_9100_tx_278 1 + 830174 830813 . 1 640 0 -chrXVI 830174 830819 HC_gene_9100_tx_279 1 + 830174 830819 . 1 646 0 -chrXVI 830177 830811 HC_gene_9100_tx_280 1 + 830177 830811 . 1 635 0 -chrXVI 830177 830814 HC_gene_9100_tx_281 1 + 830177 830814 . 1 638 0 -chrXVI 830186 830820 HC_gene_9100_tx_282 1 + 830186 830820 . 1 635 0 -chrXVI 830283 830824 HC_gene_9100_tx_283 1 + 830283 830824 . 1 542 0 -chrXVI 830286 830813 HC_gene_9100_tx_284 1 + 830286 830813 . 1 528 0 -chrXVI 830305 830812 HC_gene_9100_tx_285 1 + 830305 830812 . 1 508 0 -chrXVI 830307 830819 HC_gene_9100_tx_286 1 + 830307 830819 . 1 513 0 -chrXVI 830308 830813 HC_gene_9100_tx_287 1 + 830308 830813 . 1 506 0 -chrXVI 830310 830813 HC_gene_9100_tx_288 1 + 830310 830813 . 1 504 0 -chrXVI 830317 830813 HC_gene_9100_tx_289 2 + 830317 830813 . 1 497 0 -chrXVI 830318 830813 HC_gene_9100_tx_290 1 + 830318 830813 . 1 496 0 -chrXVI 830318 830817 HC_gene_9100_tx_291 1 + 830318 830817 . 1 500 0 -chrXVI 830318 830822 HC_gene_9100_tx_292 1 + 830318 830822 . 1 505 0 -chrXVI 830319 830812 HC_gene_9100_tx_293 1 + 830319 830812 . 1 494 0 -chrXVI 830322 830813 HC_gene_9100_tx_294 1 + 830322 830813 . 1 492 0 -chrXVI 830325 830824 HC_gene_9100_tx_295 1 + 830325 830824 . 1 500 0 -chrXVI 830331 830814 HC_gene_9100_tx_296 1 + 830331 830814 . 1 484 0 -chrXVI 830332 830824 HC_gene_9100_tx_297 1 + 830332 830824 . 1 493 0 -chrXVI 830340 830812 HC_gene_9100_tx_298 1 + 830340 830812 . 1 473 0 -chrXVI 830349 830813 HC_gene_9100_tx_299 1 + 830349 830813 . 1 465 0 -chrXVI 830355 830813 HC_gene_9100_tx_300 1 + 830355 830813 . 1 459 0 -chrXVI 830356 830812 HC_gene_9100_tx_301 1 + 830356 830812 . 1 457 0 -chrXVI 830357 830813 HC_gene_9100_tx_302 1 + 830357 830813 . 1 457 0 -chrXVI 830364 830824 HC_gene_9100_tx_303 1 + 830364 830824 . 1 461 0 -chrXVI 830365 830811 HC_gene_9100_tx_304 1 + 830365 830811 . 1 447 0 -chrXVI 830371 830824 HC_gene_9100_tx_305 1 + 830371 830824 . 1 454 0 -chrXVI 830373 830813 HC_gene_9100_tx_306 1 + 830373 830813 . 1 441 0 -chrXVI 830382 830813 HC_gene_9100_tx_307 1 + 830382 830813 . 1 432 0 -chrXVI 830384 830814 HC_gene_9100_tx_308 1 + 830384 830814 . 1 431 0 -chrXVI 830386 830813 HC_gene_9100_tx_309 1 + 830386 830813 . 1 428 0 -chrXVI 830386 830822 HC_gene_9100_tx_310 1 + 830386 830822 . 1 437 0 -chrXVI 830388 830813 HC_gene_9100_tx_311 1 + 830388 830813 . 1 426 0 -chrXVI 830392 830822 HC_gene_9100_tx_312 1 + 830392 830822 . 1 431 0 -chrXVI 830394 830812 HC_gene_9100_tx_313 1 + 830394 830812 . 1 419 0 -chrXVI 830394 830813 HC_gene_9100_tx_314 1 + 830394 830813 . 1 420 0 -chrXVI 830395 830813 HC_gene_9100_tx_315 1 + 830395 830813 . 1 419 0 -chrXVI 830403 830812 HC_gene_9100_tx_316 1 + 830403 830812 . 1 410 0 -chrXVI 830403 830813 HC_gene_9100_tx_317 1 + 830403 830813 . 1 411 0 -chrXVI 830405 830810 HC_gene_9100_tx_318 1 + 830405 830810 . 1 406 0 -chrXVI 830405 830813 HC_gene_9100_tx_319 1 + 830405 830813 . 1 409 0 -chrXVI 830405 830824 HC_gene_9100_tx_320 1 + 830405 830824 . 1 420 0 -chrXVI 830406 830815 HC_gene_9100_tx_321 1 + 830406 830815 . 1 410 0 -chrXVI 830414 830752 HC_gene_9100_tx_322 1 + 830414 830752 . 1 339 0 -chrXVI 830414 830754 HC_gene_9100_tx_323 1 + 830414 830754 . 1 341 0 -chrXVI 830414 830762 HC_gene_9100_tx_324 1 + 830414 830762 . 2 160,89 0,260 -chrXVI 830414 830763 HC_gene_9100_tx_325 1 + 830414 830763 . 1 350 0 -chrXVI 830414 830767 HC_gene_9100_tx_326 1 + 830414 830767 . 1 354 0 -chrXVI 830414 830769 HC_gene_9100_tx_327 3 + 830414 830769 . 1 356 0 -chrXVI 830414 830771 HC_gene_9100_tx_328 4 + 830414 830771 . 1 358 0 -chrXVI 830414 830772 HC_gene_9100_tx_329 1 + 830414 830772 . 1 359 0 -chrXVI 830414 830775 HC_gene_9100_tx_330 2 + 830414 830775 . 1 362 0 -chrXVI 830414 830776 HC_gene_9100_tx_331 2 + 830414 830776 . 1 363 0 -chrXVI 830414 830777 HC_gene_9100_tx_332 1 + 830414 830777 . 1 364 0 -chrXVI 830414 830778 HC_gene_9100_tx_333 1 + 830414 830778 . 1 365 0 -chrXVI 830414 830779 HC_gene_9100_tx_334 1 + 830414 830779 . 1 366 0 -chrXVI 830414 830781 HC_gene_9100_tx_335 1 + 830414 830781 . 1 368 0 -chrXVI 830414 830788 HC_gene_9100_tx_336 1 + 830414 830788 . 1 375 0 -chrXVI 830414 830789 HC_gene_9100_tx_337 1 + 830414 830789 . 1 376 0 -chrXVI 830414 830791 HC_gene_9100_tx_338 2 + 830414 830791 . 1 378 0 -chrXVI 830414 830793 HC_gene_9100_tx_339 1 + 830414 830793 . 1 380 0 -chrXVI 830414 830794 HC_gene_9100_tx_340 4 + 830414 830794 . 1 381 0 -chrXVI 830414 830796 HC_gene_9100_tx_341 1 + 830414 830796 . 1 383 0 -chrXVI 830414 830797 HC_gene_9100_tx_342 2 + 830414 830797 . 1 384 0 -chrXVI 830414 830799 HC_gene_9100_tx_343 5 + 830414 830799 . 1 386 0 -chrXVI 830414 830800 HC_gene_9100_tx_344 1 + 830414 830800 . 1 387 0 -chrXVI 830414 830801 HC_gene_9100_tx_345 1 + 830414 830801 . 1 388 0 -chrXVI 830414 830802 HC_gene_9100_tx_346 1 + 830414 830802 . 1 389 0 -chrXVI 830414 830803 HC_gene_9100_tx_347 3 + 830414 830803 . 1 390 0 -chrXVI 830414 830827 HC_gene_9100_tx_348 1 + 830414 830827 . 1 414 0 -chrXVI 830414 830828 HC_gene_9100_tx_349 4 + 830414 830828 . 1 415 0 -chrXVI 830414 830830 HC_gene_9100_tx_350 1 + 830414 830830 . 1 417 0 -chrXVI 830414 830887 HC_gene_9100_tx_351 2 + 830414 830887 . 1 474 0 -chrXVI 830414 830891 HC_gene_9100_tx_352 2 + 830414 830891 . 1 478 0 -chrXVI 830414 830892 HC_gene_9100_tx_353 1 + 830414 830892 . 1 479 0 -chrXVI 830414 830958 HC_gene_9100_tx_354 4 + 830414 830958 . 1 545 0 -chrXVI 830414 831062 HC_gene_9100_tx_355 5 + 830414 831062 . 1 649 0 -chrXVI 830418 830813 HC_gene_9100_tx_356 1 + 830418 830813 . 1 396 0 -chrXVI 830419 830812 HC_gene_9100_tx_357 1 + 830419 830812 . 1 394 0 -chrXVI 830420 830815 HC_gene_9100_tx_358 1 + 830420 830815 . 1 396 0 -chrXVI 830421 830812 HC_gene_9100_tx_359 1 + 830421 830812 . 1 392 0 -chrXVI 830424 830813 HC_gene_9100_tx_360 1 + 830424 830813 . 1 390 0 -chrXVI 830433 830824 HC_gene_9100_tx_361 1 + 830433 830824 . 1 392 0 -chrXVI 830436 830812 HC_gene_9100_tx_362 1 + 830436 830812 . 1 377 0 -chrXVI 830450 830822 HC_gene_9100_tx_363 1 + 830450 830822 . 1 373 0 -chrXVI 830455 830824 HC_gene_9100_tx_364 1 + 830455 830824 . 1 370 0 -chrXVI 830462 830813 HC_gene_9100_tx_365 1 + 830462 830813 . 1 352 0 -chrXVI 830464 830824 HC_gene_9100_tx_366 1 + 830464 830824 . 1 361 0 -chrXVI 830465 830820 HC_gene_9100_tx_367 1 + 830465 830820 . 1 356 0 -chrXVI 830467 830814 HC_gene_9100_tx_368 2 + 830467 830814 . 1 348 0 -chrXVI 830471 830818 HC_gene_9100_tx_369 1 + 830471 830818 . 1 348 0 -chrXVI 830477 830813 HC_gene_9100_tx_370 1 + 830477 830813 . 1 337 0 -chrXVI 830498 830814 HC_gene_9100_tx_371 1 + 830498 830814 . 1 317 0 -chrXVI 830499 830824 HC_gene_9100_tx_372 1 + 830499 830824 . 1 326 0 -chrXVI 830502 830813 HC_gene_9100_tx_373 2 + 830502 830813 . 1 312 0 -chrXVI 830503 830811 HC_gene_9100_tx_374 1 + 830503 830811 . 1 309 0 -chrXVI 830518 830811 HC_gene_9100_tx_375 1 + 830518 830811 . 1 294 0 -chrXVI 830518 830813 HC_gene_9100_tx_376 1 + 830518 830813 . 1 296 0 -chrXVI 830519 830813 HC_gene_9100_tx_377 1 + 830519 830813 . 1 295 0 -chrXVI 830519 830820 HC_gene_9100_tx_378 1 + 830519 830820 . 1 302 0 -chrXVI 830520 830821 HC_gene_9100_tx_379 1 + 830520 830821 . 1 302 0 -chrXVI 830524 830813 HC_gene_9100_tx_380 1 + 830524 830813 . 1 290 0 -chrXVI 830528 830824 HC_gene_9100_tx_381 1 + 830528 830824 . 1 297 0 -chrXVI 830536 830814 HC_gene_9100_tx_382 1 + 830536 830814 . 1 279 0 -chrXVI 830548 830813 HC_gene_9100_tx_383 1 + 830548 830813 . 1 266 0 -chrXVI 830552 830811 HC_gene_9100_tx_384 1 + 830552 830811 . 1 260 0 -chrXVI 830556 830813 HC_gene_9100_tx_385 1 + 830556 830813 . 1 258 0 -chrXVI 830560 830813 HC_gene_9100_tx_386 1 + 830560 830813 . 1 254 0 -chrXVI 830566 830813 HC_gene_9100_tx_387 1 + 830566 830813 . 1 248 0 -chrXVI 830566 830822 HC_gene_9100_tx_388 1 + 830566 830822 . 1 257 0 -chrXVI 830567 830813 HC_gene_9100_tx_389 1 + 830567 830813 . 1 247 0 -chrXVI 830571 830813 HC_gene_9100_tx_390 1 + 830571 830813 . 1 243 0 -chrXVI 830571 830824 HC_gene_9100_tx_391 1 + 830571 830824 . 1 254 0 -chrXVI 830580 830812 HC_gene_9100_tx_392 1 + 830580 830812 . 1 233 0 -chrXVI 830582 830821 HC_gene_9100_tx_393 1 + 830582 830821 . 1 240 0 -chrXVI 830807 830958 HC_gene_9100_tx_394 1 + 830807 830958 . 1 152 0 -chrXVI 830807 831062 HC_gene_9100_tx_395 15 + 830807 831062 . 1 256 0 -chrXVI 830807 831129 HC_gene_9100_tx_396 1 + 830807 831129 . 1 323 0 -chrXVI 831043 831644 MC_gene_9482_tx_1 1 - 831043 831644 . 1 602 0 -chrXVI 831662 831968 HC_gene_9483_tx_1 12 - 831662 831968 . 1 307 0 -chrXVI 831662 832862 HC_gene_9483_tx_2 2 - 831662 832862 . 1 1201 0 -chrXVI 831662 833484 HC_gene_9483_tx_4 6 - 831662 833484 . 1 1823 0 -chrXVI 831839 832862 HC_gene_9483_tx_3 1 - 831839 832862 . 1 1024 0 -chrXVI 831839 833484 HC_gene_9483_tx_5 1 - 831839 833484 . 1 1646 0 -chrXVI 831839 834231 HC_gene_9484_tx_1 1 - 831839 834231 . 1 2393 0 -chrXVI 833129 833524 MC_gene_9101_tx_1 1 + 833129 833524 . 1 396 0 -chrXVI 833654 835307 HC_gene_9102_tx_1 1 + 833654 835307 . 2 40,1480 0,174 -chrXVI 833654 835348 HC_gene_9102_tx_2 1 + 833654 835348 . 1 1695 0 -chrXVI 833654 835353 HC_gene_9102_tx_3 1 + 833654 835353 . 1 1700 0 -chrXVI 833654 835354 HC_gene_9102_tx_4 1 + 833654 835354 . 1 1701 0 -chrXVI 833654 835529 HC_gene_9102_tx_5 2 + 833654 835529 . 1 1876 0 -chrXVI 834547 835307 HC_gene_9102_tx_6 1 + 834547 835307 . 1 761 0 -chrXVI 834547 835316 HC_gene_9102_tx_7 1 + 834547 835316 . 1 770 0 -chrXVI 834547 835319 HC_gene_9102_tx_8 1 + 834547 835319 . 1 773 0 -chrXVI 834547 835320 HC_gene_9102_tx_9 1 + 834547 835320 . 1 774 0 -chrXVI 834547 835330 HC_gene_9102_tx_10 1 + 834547 835330 . 1 784 0 -chrXVI 834547 835337 HC_gene_9102_tx_11 2 + 834547 835337 . 1 791 0 -chrXVI 834547 835344 HC_gene_9102_tx_12 1 + 834547 835344 . 1 798 0 -chrXVI 834547 835348 HC_gene_9102_tx_13 1 + 834547 835348 . 1 802 0 -chrXVI 834547 835349 HC_gene_9102_tx_14 3 + 834547 835349 . 1 803 0 -chrXVI 834547 835350 HC_gene_9102_tx_15 1 + 834547 835350 . 1 804 0 -chrXVI 834547 835351 HC_gene_9102_tx_16 1 + 834547 835351 . 1 805 0 -chrXVI 834547 835352 HC_gene_9102_tx_17 3 + 834547 835352 . 1 806 0 -chrXVI 834547 835353 HC_gene_9102_tx_18 1 + 834547 835353 . 1 807 0 -chrXVI 834547 835354 HC_gene_9102_tx_19 6 + 834547 835354 . 1 808 0 -chrXVI 834547 835354 HC_gene_9102_tx_20 1 + 834547 835354 . 2 287,459 0,349 -chrXVI 834547 835361 HC_gene_9102_tx_21 1 + 834547 835361 . 1 815 0 -chrXVI 834547 835376 HC_gene_9102_tx_22 1 + 834547 835376 . 1 830 0 -chrXVI 834547 835385 HC_gene_9102_tx_23 1 + 834547 835385 . 1 839 0 -chrXVI 834547 835386 HC_gene_9102_tx_24 1 + 834547 835386 . 1 840 0 -chrXVI 834547 835394 HC_gene_9102_tx_25 1 + 834547 835394 . 1 848 0 -chrXVI 834547 835396 HC_gene_9102_tx_26 1 + 834547 835396 . 1 850 0 -chrXVI 834547 835399 HC_gene_9102_tx_27 1 + 834547 835399 . 2 304,371 0,482 -chrXVI 834547 835402 HC_gene_9102_tx_28 2 + 834547 835402 . 1 856 0 -chrXVI 834547 835414 HC_gene_9102_tx_29 2 + 834547 835414 . 1 868 0 -chrXVI 834547 835418 HC_gene_9102_tx_30 3 + 834547 835418 . 1 872 0 -chrXVI 834547 835422 HC_gene_9102_tx_31 1 + 834547 835422 . 1 876 0 -chrXVI 834547 835424 HC_gene_9102_tx_32 3 + 834547 835424 . 1 878 0 -chrXVI 834547 835430 HC_gene_9102_tx_33 2 + 834547 835430 . 1 884 0 -chrXVI 834547 835431 HC_gene_9102_tx_34 1 + 834547 835431 . 1 885 0 -chrXVI 834547 835433 HC_gene_9102_tx_35 1 + 834547 835433 . 1 887 0 -chrXVI 834547 835440 HC_gene_9102_tx_36 1 + 834547 835440 . 1 894 0 -chrXVI 834547 835441 HC_gene_9102_tx_37 1 + 834547 835441 . 1 895 0 -chrXVI 834547 835451 HC_gene_9102_tx_38 1 + 834547 835451 . 1 905 0 -chrXVI 834547 835470 HC_gene_9102_tx_39 1 + 834547 835470 . 1 924 0 -chrXVI 834547 835472 HC_gene_9102_tx_40 1 + 834547 835472 . 1 926 0 -chrXVI 834547 835529 HC_gene_9102_tx_41 26 + 834547 835529 . 1 983 0 -chrXVI 834547 835529 HC_gene_9102_tx_42 1 + 834547 835529 . 2 247,296 0,687 -chrXVI 834547 837700 HC_gene_9102_tx_66 1 + 834547 837700 . 1 3154 0 -chrXVI 834677 835343 HC_gene_9102_tx_43 1 + 834677 835343 . 1 667 0 -chrXVI 834677 835354 HC_gene_9102_tx_44 1 + 834677 835354 . 1 678 0 -chrXVI 834677 835407 HC_gene_9102_tx_45 1 + 834677 835407 . 1 731 0 -chrXVI 834677 835410 HC_gene_9102_tx_46 2 + 834677 835410 . 1 734 0 -chrXVI 834677 835529 HC_gene_9102_tx_47 2 + 834677 835529 . 1 853 0 -chrXVI 834799 835334 HC_gene_9102_tx_48 1 + 834799 835334 . 1 536 0 -chrXVI 834799 835351 HC_gene_9102_tx_49 1 + 834799 835351 . 1 553 0 -chrXVI 834799 835409 HC_gene_9102_tx_50 1 + 834799 835409 . 1 611 0 -chrXVI 834799 835411 HC_gene_9102_tx_51 1 + 834799 835411 . 1 613 0 -chrXVI 834799 835413 HC_gene_9102_tx_52 1 + 834799 835413 . 1 615 0 -chrXVI 834799 835529 HC_gene_9102_tx_53 1 + 834799 835529 . 1 731 0 -chrXVI 834906 835309 HC_gene_9102_tx_54 1 + 834906 835309 . 1 404 0 -chrXVI 834906 835315 HC_gene_9102_tx_55 1 + 834906 835315 . 1 410 0 -chrXVI 834906 835318 HC_gene_9102_tx_56 2 + 834906 835318 . 1 413 0 -chrXVI 834906 835340 HC_gene_9102_tx_57 1 + 834906 835340 . 1 435 0 -chrXVI 834906 835343 HC_gene_9102_tx_58 1 + 834906 835343 . 1 438 0 -chrXVI 834906 835402 HC_gene_9102_tx_59 1 + 834906 835402 . 1 497 0 -chrXVI 834906 835414 HC_gene_9102_tx_60 1 + 834906 835414 . 1 509 0 -chrXVI 834906 835423 HC_gene_9102_tx_61 1 + 834906 835423 . 1 518 0 -chrXVI 834906 835431 HC_gene_9102_tx_62 1 + 834906 835431 . 1 526 0 -chrXVI 834906 835441 HC_gene_9102_tx_63 1 + 834906 835441 . 1 536 0 -chrXVI 834906 835529 HC_gene_9102_tx_64 6 + 834906 835529 . 1 624 0 -chrXVI 834906 835529 HC_gene_9102_tx_65 1 + 834906 835529 . 2 177,390 0,234 -chrXVI 835454 837402 HC_gene_9485_tx_1 2 - 835454 837402 . 1 1949 0 -chrXVI 835454 837480 HC_gene_9485_tx_2 8 - 835454 837480 . 1 2027 0 -chrXVI 837585 839599 HC_gene_9486_tx_1 1 - 837585 839599 . 1 2015 0 -chrXVI 837585 839796 HC_gene_9486_tx_2 1 - 837585 839796 . 1 2212 0 -chrXVI 837585 839870 HC_gene_9486_tx_3 2 - 837585 839870 . 1 2286 0 -chrXVI 837585 840064 HC_gene_9486_tx_4 9 - 837585 840064 . 1 2480 0 -chrXVI 837735 839599 HC_gene_9486_tx_5 4 - 837735 839599 . 1 1865 0 -chrXVI 837735 839796 HC_gene_9486_tx_6 2 - 837735 839796 . 1 2062 0 -chrXVI 837735 839870 HC_gene_9486_tx_7 4 - 837735 839870 . 1 2136 0 -chrXVI 837735 840064 HC_gene_9486_tx_8 24 - 837735 840064 . 1 2330 0 -chrXVI 837735 840064 HC_gene_9486_tx_9 1 - 837735 840064 . 2 1498,489 0,1841 -chrXVI 839830 840064 HC_gene_9486_tx_10 1 - 839830 840064 . 1 235 0 -chrXVI 840080 840797 MC_gene_9487_tx_1 1 - 840080 840797 . 1 718 0 -chrXVI 840276 840612 MC_gene_9103_tx_1 1 + 840276 840612 . 1 337 0 -chrXVI 841095 842788 HC_gene_9104_tx_1 3 + 841095 842788 . 1 1694 0 -chrXVI 841214 842788 HC_gene_9104_tx_2 7 + 841214 842788 . 1 1575 0 -chrXVI 841920 842788 HC_gene_9104_tx_3 1 + 841920 842788 . 1 869 0 -chrXVI 842702 842974 LC_gene_9488_tx_1 1 - 842702 842974 . 1 273 0 -chrXVI 843194 844195 HC_gene_9105_tx_1 34 + 843194 844195 . 1 1002 0 -chrXVI 843497 844195 HC_gene_9105_tx_2 3 + 843497 844195 . 1 699 0 -chrXVI 843579 844195 HC_gene_9105_tx_3 3 + 843579 844195 . 1 617 0 -chrXVI 844058 845201 MC_gene_9489_tx_1 1 - 844058 845201 . 1 1144 0 -chrXVI 844334 844730 MC_gene_9106_tx_1 1 + 844334 844730 . 1 397 0 -chrXVI 847957 850504 MC_gene_9107_tx_1 1 + 847957 850504 . 1 2548 0 -chrXVI 848694 850423 MC_gene_9107_tx_2 1 + 848694 850423 . 1 1730 0 -chrXVI 850570 852455 MC_gene_9490_tx_1 1 - 850570 852455 . 1 1886 0 -chrXVI 855538 856286 MC_gene_9491_tx_1 1 - 855538 856286 . 1 749 0 -chrXVI 856490 857041 HC_gene_9108_tx_1 1 + 856490 857041 . 1 552 0 -chrXVI 857384 860020 HC_gene_9109_tx_1 1 + 857384 860020 . 1 2637 0 -chrXVI 857384 860022 HC_gene_9109_tx_2 2 + 857384 860022 . 1 2639 0 -chrXVI 857384 860024 HC_gene_9109_tx_3 4 + 857384 860024 . 1 2641 0 -chrXVI 857384 860025 HC_gene_9109_tx_4 4 + 857384 860025 . 1 2642 0 -chrXVI 857384 860026 HC_gene_9109_tx_5 3 + 857384 860026 . 1 2643 0 -chrXVI 857384 860032 HC_gene_9109_tx_6 1 + 857384 860032 . 1 2649 0 -chrXVI 857384 860041 HC_gene_9109_tx_7 1 + 857384 860041 . 1 2658 0 -chrXVI 857384 860048 HC_gene_9109_tx_8 1 + 857384 860048 . 1 2665 0 -chrXVI 857384 860049 HC_gene_9109_tx_9 1 + 857384 860049 . 1 2666 0 -chrXVI 857384 860059 HC_gene_9109_tx_10 1 + 857384 860059 . 1 2676 0 -chrXVI 857384 860246 HC_gene_9109_tx_11 1 + 857384 860246 . 1 2863 0 -chrXVI 857559 860021 HC_gene_9109_tx_12 1 + 857559 860021 . 1 2463 0 -chrXVI 857559 860023 HC_gene_9109_tx_13 2 + 857559 860023 . 1 2465 0 -chrXVI 857559 860026 HC_gene_9109_tx_14 1 + 857559 860026 . 1 2468 0 -chrXVI 857559 860246 HC_gene_9109_tx_15 1 + 857559 860246 . 1 2688 0 -chrXVI 857822 860021 HC_gene_9109_tx_16 1 + 857822 860021 . 1 2200 0 -chrXVI 857822 860025 HC_gene_9109_tx_17 5 + 857822 860025 . 1 2204 0 -chrXVI 857822 860032 HC_gene_9109_tx_18 1 + 857822 860032 . 1 2211 0 -chrXVI 858189 860019 HC_gene_9109_tx_19 1 + 858189 860019 . 1 1831 0 -chrXVI 858189 860024 HC_gene_9109_tx_20 1 + 858189 860024 . 1 1836 0 -chrXVI 858189 860024 HC_gene_9109_tx_21 1 + 858189 860024 . 3 223,220,1175 0,322,661 -chrXVI 858189 860025 HC_gene_9109_tx_22 1 + 858189 860025 . 1 1837 0 -chrXVI 858189 860026 HC_gene_9109_tx_23 1 + 858189 860026 . 1 1838 0 -chrXVI 858189 860246 HC_gene_9109_tx_24 1 + 858189 860246 . 1 2058 0 -chrXVI 858337 860020 HC_gene_9109_tx_25 1 + 858337 860020 . 2 107,1304 0,380 -chrXVI 858337 860021 HC_gene_9109_tx_26 2 + 858337 860021 . 1 1685 0 -chrXVI 858337 860022 HC_gene_9109_tx_27 2 + 858337 860022 . 1 1686 0 -chrXVI 858337 860023 HC_gene_9109_tx_28 2 + 858337 860023 . 1 1687 0 -chrXVI 858337 860024 HC_gene_9109_tx_29 1 + 858337 860024 . 1 1688 0 -chrXVI 858337 860025 HC_gene_9109_tx_30 1 + 858337 860025 . 1 1689 0 -chrXVI 858337 860050 HC_gene_9109_tx_31 2 + 858337 860050 . 1 1714 0 -chrXVI 858561 860018 HC_gene_9109_tx_32 1 + 858561 860018 . 1 1458 0 -chrXVI 858561 860019 HC_gene_9109_tx_33 1 + 858561 860019 . 1 1459 0 -chrXVI 858561 860020 HC_gene_9109_tx_34 4 + 858561 860020 . 1 1460 0 -chrXVI 858561 860021 HC_gene_9109_tx_35 1 + 858561 860021 . 1 1461 0 -chrXVI 858561 860037 HC_gene_9109_tx_36 1 + 858561 860037 . 1 1477 0 -chrXVI 858561 860049 HC_gene_9109_tx_37 1 + 858561 860049 . 1 1489 0 -chrXVI 858894 860021 HC_gene_9109_tx_38 1 + 858894 860021 . 1 1128 0 -chrXVI 858894 860024 HC_gene_9109_tx_39 3 + 858894 860024 . 1 1131 0 -chrXVI 858894 860025 HC_gene_9109_tx_40 1 + 858894 860025 . 1 1132 0 -chrXVI 858894 860032 HC_gene_9109_tx_41 1 + 858894 860032 . 1 1139 0 -chrXVI 858894 860246 HC_gene_9109_tx_42 1 + 858894 860246 . 1 1353 0 -chrXVI 859977 860583 LC_gene_9492_tx_1 1 - 859977 860583 . 1 607 0 -chrXVI 860947 864133 HC_gene_9110_tx_1 1 + 860947 864133 . 1 3187 0 -chrXVI 861182 864133 HC_gene_9110_tx_2 27 + 861182 864133 . 1 2952 0 -chrXVI 861182 864133 HC_gene_9110_tx_3 1 + 861182 864133 . 2 1079,1763 0,1189 -chrXVI 861182 864133 HC_gene_9110_tx_4 1 + 861182 864133 . 2 1012,1834 0,1118 -chrXVI 861182 864133 HC_gene_9110_tx_5 1 + 861182 864133 . 2 1514,960 0,1992 -chrXVI 861182 864133 HC_gene_9110_tx_6 1 + 861182 864133 . 2 1847,682 0,2270 -chrXVI 861182 864133 HC_gene_9110_tx_7 1 + 861182 864133 . 2 1053,1847 0,1105 -chrXVI 861400 864133 HC_gene_9110_tx_8 2 + 861400 864133 . 1 2734 0 -chrXVI 861795 864133 HC_gene_9110_tx_9 4 + 861795 864133 . 1 2339 0 -chrXVI 862155 864133 HC_gene_9110_tx_10 5 + 862155 864133 . 1 1979 0 -chrXVI 862219 864080 HC_gene_9493_tx_1 1 - 862219 864080 . 1 1862 0 -chrXVI 862621 864133 HC_gene_9110_tx_11 11 + 862621 864133 . 1 1513 0 -chrXVI 862621 864133 HC_gene_9110_tx_12 1 + 862621 864133 . 2 826,612 0,901 -chrXVI 863337 864133 HC_gene_9110_tx_13 13 + 863337 864133 . 1 797 0 -chrXVI 863574 864133 HC_gene_9110_tx_14 14 + 863574 864133 . 1 560 0 -chrXVI 864104 866494 HC_gene_9494_tx_1 1 - 864104 866494 . 1 2391 0 -chrXVI 864250 864827 HC_gene_9494_tx_4 1 - 864250 864827 . 1 578 0 -chrXVI 864250 865150 HC_gene_9494_tx_6 2 - 864250 865150 . 1 901 0 -chrXVI 864250 866494 HC_gene_9494_tx_2 4 - 864250 866494 . 1 2245 0 -chrXVI 864361 864827 HC_gene_9494_tx_5 5 - 864361 864827 . 1 467 0 -chrXVI 864361 865150 HC_gene_9494_tx_7 2 - 864361 865150 . 1 790 0 -chrXVI 864361 865620 HC_gene_9494_tx_8 3 - 864361 865620 . 1 1260 0 -chrXVI 864361 866494 HC_gene_9494_tx_3 11 - 864361 866494 . 1 2134 0 -chrXVI 865082 865557 MC_gene_9111_tx_1 1 + 865082 865557 . 1 476 0 -chrXVI 866674 868324 HC_gene_9495_tx_1 7 - 866674 868324 . 1 1651 0 -chrXVI 866718 868381 MC_gene_9112_tx_1 1 + 866718 868381 . 1 1664 0 -chrXVI 867131 868324 HC_gene_9495_tx_2 7 - 867131 868324 . 1 1194 0 -chrXVI 867131 868324 HC_gene_9495_tx_3 1 - 867131 868324 . 2 339,687 0,507 -chrXVI 868475 868929 HC_gene_9496_tx_1 108 - 868475 868929 . 1 455 0 -chrXVI 868475 869001 HC_gene_9496_tx_2 5 - 868475 869001 . 1 527 0 -chrXVI 868475 869398 HC_gene_9496_tx_3 221 - 868475 869398 . 1 924 0 -chrXVI 868475 869398 HC_gene_9496_tx_4 1 - 868475 869398 . 2 496,194 0,730 -chrXVI 868475 869398 HC_gene_9496_tx_5 1 - 868475 869398 . 2 369,507 0,417 -chrXVI 868475 869398 HC_gene_9496_tx_6 1 - 868475 869398 . 2 369,519 0,405 -chrXVI 868475 869398 HC_gene_9496_tx_7 1 - 868475 869398 . 2 369,500 0,424 -chrXVI 868475 869703 HC_gene_9496_tx_12 20 - 868475 869703 . 1 1229 0 -chrXVI 868475 869874 HC_gene_9496_tx_13 22 - 868475 869874 . 1 1400 0 -chrXVI 868475 870029 HC_gene_9496_tx_14 1 - 868475 870029 . 2 393,1029 0,526 -chrXVI 868475 870042 HC_gene_9496_tx_15 189 - 868475 870042 . 1 1568 0 -chrXVI 868475 870042 HC_gene_9496_tx_16 1 - 868475 870042 . 2 296,796 0,772 -chrXVI 868475 870042 HC_gene_9496_tx_17 1 - 868475 870042 . 2 263,1179 0,389 -chrXVI 868475 870042 HC_gene_9496_tx_18 1 - 868475 870042 . 2 556,730 0,838 -chrXVI 868475 870042 HC_gene_9496_tx_19 1 - 868475 870042 . 2 863,379 0,1189 -chrXVI 868593 868929 HC_gene_9496_tx_28 28 - 868593 868929 . 1 337 0 -chrXVI 868593 869001 HC_gene_9496_tx_29 4 - 868593 869001 . 1 409 0 -chrXVI 868593 869398 HC_gene_9496_tx_8 146 - 868593 869398 . 1 806 0 -chrXVI 868593 869398 HC_gene_9496_tx_9 1 - 868593 869398 . 2 580,152 0,654 -chrXVI 868593 869398 HC_gene_9496_tx_10 1 - 868593 869398 . 2 456,225 0,581 -chrXVI 868593 869398 HC_gene_9496_tx_11 1 - 868593 869398 . 2 326,386 0,420 -chrXVI 868593 869703 HC_gene_9496_tx_20 12 - 868593 869703 . 1 1111 0 -chrXVI 868593 869874 HC_gene_9496_tx_21 8 - 868593 869874 . 1 1282 0 -chrXVI 868593 869874 HC_gene_9496_tx_22 1 - 868593 869874 . 2 308,336 0,946 -chrXVI 868593 870042 HC_gene_9496_tx_23 123 - 868593 870042 . 1 1450 0 -chrXVI 868593 870042 HC_gene_9496_tx_24 1 - 868593 870042 . 2 795,567 0,883 -chrXVI 868593 870042 HC_gene_9496_tx_25 1 - 868593 870042 . 2 871,529 0,921 -chrXVI 868593 870042 HC_gene_9496_tx_26 1 - 868593 870042 . 2 773,589 0,861 -chrXVI 868593 870042 HC_gene_9496_tx_27 1 - 868593 870042 . 2 1084,253 0,1197 -chrXVI 870691 876127 HC_gene_9113_tx_1 2 + 870691 876127 . 1 5437 0 -chrXVI 874002 875122 LC_gene_9497_tx_1 1 - 874002 875122 . 1 1121 0 -chrXVI 875170 876127 HC_gene_9113_tx_2 484 + 875170 876127 . 1 958 0 -chrXVI 875314 876127 HC_gene_9113_tx_3 42 + 875314 876127 . 1 814 0 -chrXVI 875465 876127 HC_gene_9113_tx_4 24 + 875465 876127 . 1 663 0 -chrXVI 875557 876127 HC_gene_9113_tx_5 60 + 875557 876127 . 1 571 0 -chrXVI 875813 876127 HC_gene_9113_tx_6 67 + 875813 876127 . 1 315 0 -chrXVI 876104 876680 HC_gene_9498_tx_1 11 - 876104 876680 . 1 577 0 -chrXVI 876172 876619 HC_gene_9498_tx_2 2 - 876172 876619 . 1 448 0 -chrXVI 876172 876620 HC_gene_9498_tx_3 1 - 876172 876620 . 1 449 0 -chrXVI 876172 876623 HC_gene_9498_tx_4 1 - 876172 876623 . 1 452 0 -chrXVI 876172 876630 HC_gene_9498_tx_5 1 - 876172 876630 . 1 459 0 -chrXVI 876172 876635 HC_gene_9498_tx_6 1 - 876172 876635 . 1 464 0 -chrXVI 876172 876636 HC_gene_9498_tx_7 1 - 876172 876636 . 1 465 0 -chrXVI 876172 876638 HC_gene_9498_tx_8 1 - 876172 876638 . 1 467 0 -chrXVI 876172 876639 HC_gene_9498_tx_9 2 - 876172 876639 . 1 468 0 -chrXVI 876172 876643 HC_gene_9498_tx_10 2 - 876172 876643 . 1 472 0 -chrXVI 876172 876649 HC_gene_9498_tx_11 2 - 876172 876649 . 1 478 0 -chrXVI 876172 876657 HC_gene_9498_tx_12 1 - 876172 876657 . 1 486 0 -chrXVI 876172 876658 HC_gene_9498_tx_13 1 - 876172 876658 . 1 487 0 -chrXVI 876172 876661 HC_gene_9498_tx_14 4 - 876172 876661 . 1 490 0 -chrXVI 876172 876665 HC_gene_9498_tx_15 1 - 876172 876665 . 1 494 0 -chrXVI 876172 876666 HC_gene_9498_tx_16 2 - 876172 876666 . 1 495 0 -chrXVI 876172 876680 HC_gene_9498_tx_17 154 - 876172 876680 . 1 509 0 -chrXVI 876172 876680 HC_gene_9498_tx_18 1 - 876172 876680 . 2 218,251 0,258 -chrXVI 876432 876893 HC_gene_9114_tx_1 2 + 876432 876893 . 1 462 0 -chrXVI 876789 877243 HC_gene_9499_tx_1 24 - 876789 877243 . 1 455 0 -chrXVI 876789 877683 HC_gene_9499_tx_2 62 - 876789 877683 . 1 895 0 -chrXVI 877898 880206 HC_gene_9115_tx_1 2 + 877898 880206 . 1 2309 0 -chrXVI 877974 878416 LC_gene_9500_tx_1 1 - 877974 878416 . 1 443 0 -chrXVI 878064 880206 HC_gene_9115_tx_2 7 + 878064 880206 . 1 2143 0 -chrXVI 878064 880206 HC_gene_9115_tx_3 1 + 878064 880206 . 2 980,1074 0,1069 -chrXVI 878064 880206 HC_gene_9115_tx_4 1 + 878064 880206 . 2 1189,853 0,1290 -chrXVI 878656 880206 HC_gene_9115_tx_5 44 + 878656 880206 . 1 1551 0 -chrXVI 878656 880206 HC_gene_9115_tx_6 1 + 878656 880206 . 2 999,473 0,1078 -chrXVI 879170 880206 HC_gene_9115_tx_7 13 + 879170 880206 . 1 1037 0 -chrXVI 879851 880206 HC_gene_9115_tx_8 18 + 879851 880206 . 1 356 0 -chrXVI 880623 881078 LC_gene_9116_tx_1 1 + 880623 881078 . 1 456 0 -chrXVI 881049 881934 MC_gene_9501_tx_1 1 - 881049 881934 . 1 886 0 -chrXVI 881309 882661 LC_gene_9117_tx_1 1 + 881309 882661 . 1 1353 0 -chrXVI 881496 882043 MC_gene_9502_tx_1 1 - 881496 882043 . 1 548 0 -chrXVI 882131 882581 HC_gene_9503_tx_1 1 - 882131 882581 . 1 451 0 -chrXVI 882601 883002 MC_gene_9504_tx_1 1 - 882601 883002 . 1 402 0 -chrXVI 882964 883793 HC_gene_9118_tx_1 1 + 882964 883793 . 2 424,307 0,523 -chrXVI 883064 883584 MC_gene_9505_tx_1 1 - 883064 883584 . 1 521 0 -chrXVI 883226 883677 HC_gene_9119_tx_1 84 + 883226 883677 . 2 162,191 0,261 -chrXVI 883226 883677 HC_gene_9119_tx_2 4 + 883226 883677 . 1 452 0 -chrXVI 883226 883677 HC_gene_9119_tx_3 1 + 883226 883677 . 2 171,154 0,298 -chrXVI 883226 883783 HC_gene_9119_tx_4 5 + 883226 883783 . 2 162,297 0,261 -chrXVI 883226 883783 HC_gene_9119_tx_5 1 + 883226 883783 . 1 558 0 -chrXVI 883226 883784 HC_gene_9119_tx_6 5 + 883226 883784 . 2 162,298 0,261 -chrXVI 883226 883785 HC_gene_9119_tx_7 11 + 883226 883785 . 2 162,299 0,261 -chrXVI 883226 883786 HC_gene_9119_tx_8 1 + 883226 883786 . 3 162,187,78 0,261,483 -chrXVI 883226 883786 HC_gene_9119_tx_9 11 + 883226 883786 . 2 162,300 0,261 -chrXVI 883226 883787 HC_gene_9119_tx_10 46 + 883226 883787 . 2 162,301 0,261 -chrXVI 883226 883787 HC_gene_9119_tx_11 1 + 883226 883787 . 1 562 0 -chrXVI 883226 883788 HC_gene_9119_tx_12 1 + 883226 883788 . 2 162,302 0,261 -chrXVI 883226 883789 HC_gene_9119_tx_13 6 + 883226 883789 . 2 162,303 0,261 -chrXVI 883226 883790 HC_gene_9119_tx_14 7 + 883226 883790 . 2 162,304 0,261 -chrXVI 883226 883791 HC_gene_9119_tx_15 2 + 883226 883791 . 2 162,305 0,261 -chrXVI 883226 883793 HC_gene_9119_tx_16 299 + 883226 883793 . 2 162,307 0,261 -chrXVI 883226 883793 HC_gene_9119_tx_17 1 + 883226 883793 . 2 191,226 0,342 -chrXVI 883226 883793 HC_gene_9119_tx_18 1 + 883226 883793 . 2 272,239 0,329 -chrXVI 883226 883793 HC_gene_9119_tx_19 1 + 883226 883793 . 2 158,299 0,269 -chrXVI 883226 883794 HC_gene_9119_tx_20 3 + 883226 883794 . 2 162,308 0,261 -chrXVI 883226 883794 HC_gene_9119_tx_21 1 + 883226 883794 . 2 158,300 0,269 -chrXVI 883226 883795 HC_gene_9119_tx_22 4 + 883226 883795 . 2 162,309 0,261 -chrXVI 883226 883795 HC_gene_9119_tx_23 1 + 883226 883795 . 2 166,309 0,261 -chrXVI 883226 883796 HC_gene_9119_tx_24 36 + 883226 883796 . 2 162,310 0,261 -chrXVI 883226 883796 HC_gene_9119_tx_25 1 + 883226 883796 . 2 158,302 0,269 -chrXVI 883226 883797 HC_gene_9119_tx_26 4 + 883226 883797 . 2 162,311 0,261 -chrXVI 883226 883798 HC_gene_9119_tx_27 2 + 883226 883798 . 2 162,312 0,261 -chrXVI 883226 883799 HC_gene_9119_tx_28 2 + 883226 883799 . 2 162,313 0,261 -chrXVI 883226 883800 HC_gene_9119_tx_29 3 + 883226 883800 . 2 162,314 0,261 -chrXVI 883226 883801 HC_gene_9119_tx_30 4 + 883226 883801 . 2 162,315 0,261 -chrXVI 883226 883801 HC_gene_9119_tx_31 1 + 883226 883801 . 2 158,307 0,269 -chrXVI 883226 883802 HC_gene_9119_tx_32 2 + 883226 883802 . 2 162,316 0,261 -chrXVI 883226 883803 HC_gene_9119_tx_33 1 + 883226 883803 . 2 162,317 0,261 -chrXVI 883226 883804 HC_gene_9119_tx_34 2 + 883226 883804 . 2 162,318 0,261 -chrXVI 883226 883805 HC_gene_9119_tx_35 2 + 883226 883805 . 2 162,319 0,261 -chrXVI 883226 883806 HC_gene_9119_tx_36 4 + 883226 883806 . 2 162,320 0,261 -chrXVI 883226 883807 HC_gene_9119_tx_37 1 + 883226 883807 . 2 162,321 0,261 -chrXVI 883226 883808 HC_gene_9119_tx_38 2 + 883226 883808 . 2 162,322 0,261 -chrXVI 883226 883809 HC_gene_9119_tx_39 1 + 883226 883809 . 2 162,323 0,261 -chrXVI 883226 883810 HC_gene_9119_tx_40 1 + 883226 883810 . 2 162,324 0,261 -chrXVI 883226 883811 HC_gene_9119_tx_41 3 + 883226 883811 . 2 162,325 0,261 -chrXVI 883226 883816 HC_gene_9119_tx_42 1 + 883226 883816 . 2 162,330 0,261 -chrXVI 883226 883817 HC_gene_9119_tx_43 1 + 883226 883817 . 2 162,331 0,261 -chrXVI 883226 883818 HC_gene_9119_tx_44 4 + 883226 883818 . 2 162,332 0,261 -chrXVI 883226 883819 HC_gene_9119_tx_45 2 + 883226 883819 . 2 162,333 0,261 -chrXVI 883226 883820 HC_gene_9119_tx_46 3 + 883226 883820 . 2 162,334 0,261 -chrXVI 883226 883825 HC_gene_9119_tx_47 2 + 883226 883825 . 2 162,339 0,261 -chrXVI 883226 883826 HC_gene_9119_tx_48 2 + 883226 883826 . 2 162,340 0,261 -chrXVI 883226 883828 HC_gene_9119_tx_49 1 + 883226 883828 . 2 162,342 0,261 -chrXVI 883226 883835 HC_gene_9119_tx_50 2 + 883226 883835 . 2 162,349 0,261 -chrXVI 883226 883836 HC_gene_9119_tx_51 1 + 883226 883836 . 2 162,350 0,261 -chrXVI 883226 883837 HC_gene_9119_tx_52 3 + 883226 883837 . 2 162,351 0,261 -chrXVI 883226 883841 HC_gene_9119_tx_53 2 + 883226 883841 . 2 162,355 0,261 -chrXVI 883226 883849 HC_gene_9119_tx_54 1 + 883226 883849 . 2 162,363 0,261 -chrXVI 883226 883854 HC_gene_9119_tx_55 1 + 883226 883854 . 2 162,368 0,261 -chrXVI 883226 883858 HC_gene_9119_tx_56 2 + 883226 883858 . 2 162,372 0,261 -chrXVI 883226 883859 HC_gene_9119_tx_57 2 + 883226 883859 . 2 162,373 0,261 -chrXVI 883226 883862 HC_gene_9119_tx_58 1 + 883226 883862 . 2 162,376 0,261 -chrXVI 883729 884197 LC_gene_9506_tx_1 1 - 883729 884197 . 1 469 0 -chrXVI 883791 885637 HC_gene_9120_tx_1 23 + 883791 885637 . 1 1847 0 -chrXVI 883791 885637 HC_gene_9120_tx_2 1 + 883791 885637 . 2 1730,53 0,1794 -chrXVI 883791 885637 HC_gene_9120_tx_3 1 + 883791 885637 . 2 576,1214 0,633 -chrXVI 883791 885637 HC_gene_9120_tx_4 1 + 883791 885637 . 2 820,903 0,944 -chrXVI 883791 885637 HC_gene_9120_tx_5 1 + 883791 885637 . 2 570,1113 0,734 -chrXVI 883791 885637 HC_gene_9120_tx_6 1 + 883791 885637 . 2 1552,233 0,1614 -chrXVI 884038 885637 HC_gene_9120_tx_7 5 + 884038 885637 . 1 1600 0 -chrXVI 885093 886107 MC_gene_9507_tx_1 1 - 885093 886107 . 1 1015 0 -chrXVI 885765 886515 HC_gene_9121_tx_1 27 + 885765 886515 . 1 751 0 -chrXVI 885765 886652 HC_gene_9121_tx_2 1 + 885765 886652 . 1 888 0 -chrXVI 886180 886702 HC_gene_9508_tx_1 1 - 886180 886702 . 1 523 0 -chrXVI 886180 886830 HC_gene_9508_tx_2 1 - 886180 886830 . 1 651 0 -chrXVI 886180 887237 HC_gene_9508_tx_5 1 - 886180 887237 . 1 1058 0 -chrXVI 886180 887870 HC_gene_9508_tx_7 1 - 886180 887870 . 1 1691 0 -chrXVI 886181 886515 HC_gene_9121_tx_3 2 + 886181 886515 . 1 335 0 -chrXVI 886300 886702 HC_gene_9508_tx_13 15 - 886300 886702 . 1 403 0 -chrXVI 886300 886830 HC_gene_9508_tx_3 15 - 886300 886830 . 1 531 0 -chrXVI 886300 886932 HC_gene_9508_tx_4 14 - 886300 886932 . 1 633 0 -chrXVI 886300 887237 HC_gene_9508_tx_6 14 - 886300 887237 . 1 938 0 -chrXVI 886300 887753 HC_gene_9508_tx_8 4 - 886300 887753 . 1 1454 0 -chrXVI 886300 887870 HC_gene_9508_tx_9 43 - 886300 887870 . 1 1571 0 -chrXVI 886300 887870 HC_gene_9508_tx_10 1 - 886300 887870 . 2 604,289 0,1282 -chrXVI 886300 887870 HC_gene_9508_tx_11 1 - 886300 887870 . 2 624,889 0,682 -chrXVI 886300 887870 HC_gene_9508_tx_12 1 - 886300 887870 . 2 702,545 0,1026 -chrXVI 886627 888041 LC_gene_9122_tx_1 1 + 886627 888041 . 1 1415 0 -chrXVI 887920 888729 HC_gene_9509_tx_1 8 - 887920 888729 . 1 810 0 -chrXVI 888954 891124 HC_gene_9123_tx_1 10 + 888954 891124 . 1 2171 0 -chrXVI 888954 892086 HC_gene_9123_tx_2 1 + 888954 892086 . 3 620,351,1677 0,912,1456 -chrXVI 890949 891681 HC_gene_9510_tx_1 3 - 890949 891681 . 1 733 0 -chrXVI 890949 891954 HC_gene_9510_tx_2 4 - 890949 891954 . 1 1006 0 -chrXVI 890949 892085 HC_gene_9510_tx_3 57 - 890949 892085 . 1 1137 0 -chrXVI 892302 893819 HC_gene_9124_tx_1 10 + 892302 893819 . 1 1518 0 -chrXVI 892302 893819 HC_gene_9124_tx_2 1 + 892302 893819 . 2 997,422 0,1096 -chrXVI 892404 893819 HC_gene_9124_tx_3 3 + 892404 893819 . 1 1416 0 -chrXVI 893713 894073 HC_gene_9511_tx_1 13 - 893713 894073 . 1 361 0 -chrXVI 893713 894227 HC_gene_9511_tx_2 8 - 893713 894227 . 1 515 0 -chrXVI 893713 895775 HC_gene_9511_tx_3 10 - 893713 895775 . 1 2063 0 -chrXVI 893713 895775 HC_gene_9511_tx_4 1 - 893713 895775 . 2 1604,402 0,1661 -chrXVI 893713 895775 HC_gene_9511_tx_5 1 - 893713 895775 . 3 1157,14,318 0,1483,1745 -chrXVI 893713 895775 HC_gene_9511_tx_6 1 - 893713 895775 . 2 765,501 0,1562 -chrXVI 895939 897077 HC_gene_9125_tx_1 32 + 895939 897077 . 1 1139 0 -chrXVI 896941 897764 HC_gene_9512_tx_1 1 - 896941 897764 . 1 824 0 -chrXVI 896941 899724 HC_gene_9512_tx_4 1 - 896941 899724 . 1 2784 0 -chrXVI 897064 897764 HC_gene_9512_tx_2 77 - 897064 897764 . 1 701 0 -chrXVI 897064 897819 HC_gene_9512_tx_3 18 - 897064 897819 . 1 756 0 -chrXVI 897064 898047 HC_gene_9512_tx_12 34 - 897064 898047 . 1 984 0 -chrXVI 897064 899564 HC_gene_9512_tx_5 7 - 897064 899564 . 1 2501 0 -chrXVI 897064 899564 HC_gene_9512_tx_6 1 - 897064 899564 . 2 1858,420 0,2081 -chrXVI 897064 899724 HC_gene_9512_tx_7 93 - 897064 899724 . 1 2661 0 -chrXVI 897064 899724 HC_gene_9512_tx_8 1 - 897064 899724 . 2 990,1546 0,1115 -chrXVI 897064 899724 HC_gene_9512_tx_9 1 - 897064 899724 . 2 2040,325 0,2336 -chrXVI 897064 899724 HC_gene_9512_tx_10 1 - 897064 899724 . 3 1744,357,101 0,1893,2560 -chrXVI 897064 899724 HC_gene_9512_tx_11 1 - 897064 899724 . 2 2489,133 0,2528 -chrXVI 900131 900532 HC_gene_9126_tx_1 128 + 900131 900532 . 1 402 0 -chrXVI 900528 900904 HC_gene_9513_tx_1 1 - 900528 900904 . 1 377 0 -chrXVI 900717 901641 HC_gene_9127_tx_1 292 + 900717 901641 . 1 925 0 -chrXVI 900928 901549 MC_gene_9514_tx_1 1 - 900928 901549 . 1 622 0 -chrXVI 901010 901641 HC_gene_9127_tx_2 50 + 901010 901641 . 1 632 0 -chrXVI 901167 901641 HC_gene_9127_tx_3 33 + 901167 901641 . 1 475 0 -chrXVI 902008 906706 MC_gene_9128_tx_1 1 + 902008 906706 . 2 2800,1836 0,2863 -chrXVI 902222 906791 MC_gene_9128_tx_2 1 + 902222 906791 . 1 4570 0 -chrXVI 903862 906753 MC_gene_9128_tx_3 1 + 903862 906753 . 1 2892 0 -chrXVI 905956 906800 MC_gene_9129_tx_1 1 + 905956 906800 . 1 845 0 -chrXVI 906054 906813 MC_gene_9129_tx_2 1 + 906054 906813 . 1 760 0 -chrXVI 906917 907160 HC_gene_9130_tx_1 1 + 906917 907160 . 1 244 0 -chrXVI 906917 909742 HC_gene_9130_tx_2 9 + 906917 909742 . 1 2826 0 -chrXVI 906917 909742 HC_gene_9130_tx_3 1 + 906917 909742 . 2 1349,1365 0,1461 -chrXVI 906917 909742 HC_gene_9130_tx_4 1 + 906917 909742 . 2 2264,435 0,2391 -chrXVI 907898 909742 HC_gene_9130_tx_5 3 + 907898 909742 . 1 1845 0 -chrXVI 908126 909742 HC_gene_9130_tx_6 5 + 908126 909742 . 1 1617 0 -chrXVI 909539 911028 HC_gene_9515_tx_1 3 - 909539 911028 . 1 1490 0 -chrXVI 909600 911028 HC_gene_9515_tx_2 18 - 909600 911028 . 1 1429 0 -chrXVI 909600 911028 HC_gene_9515_tx_3 1 - 909600 911028 . 2 582,629 0,800 -chrXVI 911240 912086 HC_gene_9131_tx_1 97 + 911240 912086 . 2 37,734 0,113 -chrXVI 911240 912086 HC_gene_9131_tx_2 464 + 911240 912086 . 1 847 0 -chrXVI 911240 912086 HC_gene_9131_tx_3 5 + 911240 912086 . 2 25,736 0,111 -chrXVI 911351 912086 HC_gene_9131_tx_4 123 + 911351 912086 . 1 736 0 -chrXVI 911889 912392 HC_gene_9516_tx_1 10 - 911889 912392 . 1 504 0 -chrXVI 911889 912489 HC_gene_9516_tx_2 145 - 911889 912489 . 1 601 0 -chrXVI 912626 917062 HC_gene_9132_tx_1 10 + 912626 917062 . 1 4437 0 -chrXVI 912626 917062 HC_gene_9132_tx_2 1 + 912626 917062 . 2 198,4124 0,313 -chrXVI 913518 917062 HC_gene_9132_tx_3 2 + 913518 917062 . 1 3545 0 -chrXVI 913635 917062 HC_gene_9132_tx_4 1 + 913635 917062 . 2 2324,1018 0,2410 -chrXVI 913635 917062 HC_gene_9132_tx_5 2 + 913635 917062 . 1 3428 0 -chrXVI 913720 917062 HC_gene_9132_tx_6 1 + 913720 917062 . 1 3343 0 -chrXVI 914052 917062 HC_gene_9132_tx_7 2 + 914052 917062 . 1 3011 0 -chrXVI 916484 917062 HC_gene_9132_tx_8 6 + 916484 917062 . 1 579 0 -chrXVI 916972 918843 HC_gene_9517_tx_1 4 - 916972 918843 . 1 1872 0 -chrXVI 916972 919072 HC_gene_9517_tx_2 26 - 916972 919072 . 1 2101 0 -chrXVI 916972 919072 HC_gene_9517_tx_3 1 - 916972 919072 . 2 507,1092 0,1009 -chrXVI 919320 920562 HC_gene_9133_tx_1 14 + 919320 920562 . 1 1243 0 -chrXVI 919320 920562 HC_gene_9133_tx_2 1 + 919320 920562 . 2 834,282 0,961 -chrXVI 919320 920651 HC_gene_9133_tx_3 55 + 919320 920651 . 1 1332 0 -chrXVI 919320 920716 HC_gene_9133_tx_4 72 + 919320 920716 . 1 1397 0 -chrXVI 919320 920716 HC_gene_9133_tx_5 1 + 919320 920716 . 2 120,853 0,544 -chrXVI 919320 920716 HC_gene_9133_tx_6 1 + 919320 920716 . 2 273,833 0,564 -chrXVI 919320 920716 HC_gene_9133_tx_7 1 + 919320 920716 . 2 712,585 0,812 -chrXVI 919320 920716 HC_gene_9133_tx_8 1 + 919320 920716 . 2 503,647 0,750 -chrXVI 919320 920937 HC_gene_9133_tx_9 4 + 919320 920937 . 1 1618 0 -chrXVI 919494 920651 HC_gene_9133_tx_10 14 + 919494 920651 . 1 1158 0 -chrXVI 919494 920651 HC_gene_9133_tx_11 1 + 919494 920651 . 2 221,788 0,370 -chrXVI 919494 920716 HC_gene_9133_tx_12 9 + 919494 920716 . 1 1223 0 -chrXVI 919606 920562 HC_gene_9133_tx_13 2 + 919606 920562 . 1 957 0 -chrXVI 919606 920651 HC_gene_9133_tx_14 4 + 919606 920651 . 1 1046 0 -chrXVI 919606 920716 HC_gene_9133_tx_15 13 + 919606 920716 . 1 1111 0 -chrXVI 919606 920937 HC_gene_9133_tx_16 1 + 919606 920937 . 2 527,597 0,735 -chrXVI 919841 920562 HC_gene_9133_tx_18 1 + 919841 920562 . 1 722 0 -chrXVI 919841 920651 HC_gene_9133_tx_19 14 + 919841 920651 . 1 811 0 -chrXVI 919841 920651 HC_gene_9133_tx_20 1 + 919841 920651 . 2 560,114 0,697 -chrXVI 919841 920716 HC_gene_9133_tx_21 1 + 919841 920716 . 2 313,479 0,397 -chrXVI 919841 920716 HC_gene_9133_tx_22 14 + 919841 920716 . 1 876 0 -chrXVI 919841 920716 HC_gene_9133_tx_23 1 + 919841 920716 . 2 314,455 0,421 -chrXVI 919841 920937 HC_gene_9133_tx_17 1 + 919841 920937 . 1 1097 0 -chrXVI 920070 920562 HC_gene_9133_tx_24 3 + 920070 920562 . 1 493 0 -chrXVI 920070 920651 HC_gene_9133_tx_25 7 + 920070 920651 . 1 582 0 -chrXVI 920070 920716 HC_gene_9133_tx_26 14 + 920070 920716 . 1 647 0 -chrXVI 920294 920629 LC_gene_9518_tx_1 1 - 920294 920629 . 1 336 0 -chrXVI 920311 920562 HC_gene_9133_tx_27 3 + 920311 920562 . 1 252 0 -chrXVI 920311 920651 HC_gene_9133_tx_28 18 + 920311 920651 . 1 341 0 -chrXVI 920311 920716 HC_gene_9133_tx_29 24 + 920311 920716 . 1 406 0 -chrXVI 920311 920716 HC_gene_9133_tx_30 1 + 920311 920716 . 2 104,238 0,168 -chrXVI 920311 920937 HC_gene_9133_tx_31 1 + 920311 920937 . 1 627 0 -chrXVI 921036 923570 MC_gene_9519_tx_1 1 - 921036 923570 . 1 2535 0 -chrXVI 921156 921788 LC_gene_9134_tx_1 1 + 921156 921788 . 1 633 0 -chrXVI 921905 922918 LC_gene_9135_tx_1 1 + 921905 922918 . 1 1014 0 -chrXVI 923570 923984 HC_gene_9520_tx_1 1 - 923570 923984 . 1 415 0 -chrXVI 923577 923984 HC_gene_9520_tx_2 1 - 923577 923984 . 1 408 0 -chrXVI 924115 927328 HC_gene_9521_tx_1 2 - 924115 927328 . 1 3214 0 -chrXVI 924162 927998 HC_gene_9136_tx_1 1 + 924162 927998 . 1 3837 0 -chrXVI 927121 928263 HC_gene_9522_tx_1 1 - 927121 928263 . 1 1143 0 -chrXVI 927195 927438 HC_gene_9522_tx_3 1 - 927195 927438 . 1 244 0 -chrXVI 927195 927767 HC_gene_9522_tx_4 1 - 927195 927767 . 1 573 0 -chrXVI 927290 928263 HC_gene_9522_tx_2 3 - 927290 928263 . 1 974 0 -chrXVI 927493 928263 HC_gene_9522_tx_5 1 - 927493 928263 . 1 771 0 -chrXVI 928696 929629 HC_gene_9137_tx_1 1 + 928696 929629 . 1 934 0 -chrXVI 928696 930179 HC_gene_9137_tx_2 3 + 928696 930179 . 1 1484 0 -chrXVI 929131 930179 HC_gene_9137_tx_3 1 + 929131 930179 . 1 1049 0 -chrXVI 929809 930179 HC_gene_9137_tx_4 2 + 929809 930179 . 1 371 0 -chrXVI 930121 930509 HC_gene_9523_tx_1 3 - 930121 930509 . 1 389 0 -chrXVI 930121 930852 HC_gene_9523_tx_2 5 - 930121 930852 . 1 732 0 -chrXVI 930121 931252 HC_gene_9523_tx_3 3 - 930121 931252 . 1 1132 0 -chrXVI 930249 931264 MC_gene_9138_tx_1 1 + 930249 931264 . 1 1016 0 -chrXVI 931396 933203 HC_gene_9139_tx_1 4 + 931396 933203 . 1 1808 0 -chrXVI 933747 934745 LC_gene_9524_tx_1 1 - 933747 934745 . 1 999 0 -chrXVI 934017 935756 HC_gene_9140_tx_1 9 + 934017 935756 . 1 1740 0 -chrXVI 934017 935756 HC_gene_9140_tx_2 1 + 934017 935756 . 2 830,862 0,878 -chrXVI 934017 935846 HC_gene_9140_tx_3 7 + 934017 935846 . 1 1830 0 -chrXVI 934470 935756 HC_gene_9140_tx_4 2 + 934470 935756 . 1 1287 0 -chrXVI 934888 935756 HC_gene_9140_tx_5 1 + 934888 935756 . 1 869 0 -chrXVI 934888 935846 HC_gene_9140_tx_6 1 + 934888 935846 . 1 959 0 -chrXVI 935407 935756 HC_gene_9140_tx_7 9 + 935407 935756 . 1 350 0 -chrXVI 935407 935846 HC_gene_9140_tx_8 1 + 935407 935846 . 1 440 0 -chrXVI 935867 936890 HC_gene_9525_tx_1 1 - 935867 936890 . 1 1024 0 -chrXVI 935939 936890 HC_gene_9525_tx_2 6 - 935939 936890 . 1 952 0 -chrXVI 935939 937398 HC_gene_9526_tx_1 2 - 935939 937398 . 1 1460 0 -chrXVI 936043 936890 HC_gene_9525_tx_3 2 - 936043 936890 . 1 848 0 -chrXVI 937221 938093 MC_gene_9141_tx_1 1 + 937221 938093 . 1 873 0 -chrXVI 938033 938323 HC_gene_9527_tx_1 15 - 938033 938323 . 1 291 0 -chrXVI 938033 938758 HC_gene_9527_tx_2 11 - 938033 938758 . 1 726 0 -chrXVI 938033 939044 HC_gene_9527_tx_3 74 - 938033 939044 . 1 1012 0 -chrXVI 938141 939208 LC_gene_9142_tx_1 1 + 938141 939208 . 1 1068 0 -chrXVI 939178 939800 MC_gene_9143_tx_1 1 + 939178 939800 . 1 623 0 -chrXVI 939200 939462 HC_gene_9528_tx_1 6 - 939200 939462 . 1 263 0 -chrXVI 939200 939779 HC_gene_9528_tx_2 7 - 939200 939779 . 1 580 0 -chrXVI 939200 941182 HC_gene_9528_tx_3 1 - 939200 941182 . 1 1983 0 -chrXVI 939862 942438 HC_gene_9144_tx_1 2 + 939862 942438 . 1 2577 0 -chrXVI 941389 942375 HC_gene_9144_tx_2 1 + 941389 942375 . 1 987 0 -chrXVI 941389 942438 HC_gene_9144_tx_3 5 + 941389 942438 . 1 1050 0 -chrXVI 942766 947743 MC_gene_9145_tx_1 1 + 942766 947743 . 1 4978 0 -chrXVI 942875 947043 LC_gene_9529_tx_1 1 - 942875 947043 . 2 1785,2198 0,1971 diff --git a/results/2022-1201/files_features/Ivanov-et-al/fusion_yeast_genes.bed b/results/2022-1201/files_features/Ivanov-et-al/fusion_yeast_genes.bed deleted file mode 100644 index 6112b3e..0000000 --- a/results/2022-1201/files_features/Ivanov-et-al/fusion_yeast_genes.bed +++ /dev/null @@ -1,465 +0,0 @@ -chrI 34257 36390 Fusion_TU_001 1 + -chrI 77431 80745 Fusion_TU_002 1 + -chrI 106140 110447 Fusion_TU_003 1 - -chrII 45614 47275 Fusion_TU_004 1 + -chrII 48792 51083 Fusion_TU_005 1 + -chrII 89941 92103 Fusion_TU_006 1 + -chrII 141343 143708 Fusion_TU_007 1 + -chrII 166096 167453 Fusion_TU_008 3 + -chrII 233030 235178 Fusion_TU_009 2 + -chrII 300148 304795 Fusion_TU_010 1 + -chrII 452620 453836 Fusion_TU_011 1 + -chrII 633573 636656 Fusion_TU_012 2 + -chrII 722591 723728 Fusion_TU_013 2 + -chrII 739827 741721 Fusion_TU_014 1 + -chrII 771236 773812 Fusion_TU_015 1 + -chrII 774685 777969 Fusion_TU_016 2 + -chrII 84421 87801 Fusion_TU_017 1 - -chrII 150298 153689 Fusion_TU_018 1 - -chrII 186768 192065 Fusion_TU_019 6 - -chrII 266612 269597 Fusion_TU_020 1 - -chrII 270743 273751 Fusion_TU_021 30 - -chrII 304738 306986 Fusion_TU_022 1 - -chrII 370762 372787 Fusion_TU_023 1 - -chrII 406110 406992 Fusion_TU_024 11 - -chrII 414061 415494 Fusion_TU_025 92 - -chrII 420067 423348 Fusion_TU_026 45 - -chrII 426030 426900 Fusion_TU_027 38 - -chrII 427052 429116 Fusion_TU_028 1 - -chrII 427645 429855 Fusion_TU_029 1 - -chrII 443744 447402 Fusion_TU_030 2 - -chrII 483802 484876 Fusion_TU_031 1 - -chrII 548261 549532 Fusion_TU_032 2 - -chrII 553430 555674 Fusion_TU_033 14 - -chrII 573714 577446 Fusion_TU_034 1 - -chrII 579009 582195 Fusion_TU_035 1 - -chrII 714724 718085 Fusion_TU_036 1 - -chrII 732510 735568 Fusion_TU_037 2 - -chrIII 70944 73421 Fusion_TU_038 1 + -chrIII 106996 108929 Fusion_TU_039 1 + -chrIII 158051 159311 Fusion_TU_040 1 + -chrIII 228285 231331 Fusion_TU_041 4 + -chrIII 258857 260079 Fusion_TU_042 3 + -chrIII 280086 286528 Fusion_TU_043 2 + -chrIII 102067 105564 Fusion_TU_044 2 - -chrIII 158294 159137 Fusion_TU_045 4 - -chrIII 160605 163219 Fusion_TU_046 2 - -chrIII 176577 177696 Fusion_TU_047 3 - -chrIII 177396 178798 Fusion_TU_048 2 - -chrIII 209802 211635 Fusion_TU_049 2 - -chrIII 233051 236829 Fusion_TU_050 4 - -chrIV 94105 95966 Fusion_TU_051 10 + -chrIV 98429 100506 Fusion_TU_052 5 + -chrIV 133404 135556 Fusion_TU_053 1 + -chrIV 229104 230625 Fusion_TU_054 1 + -chrIV 240213 242332 Fusion_TU_055 3 + -chrIV 251527 255077 Fusion_TU_056 1 + -chrIV 351425 355447 Fusion_TU_057 1 + -chrIV 432300 434109 Fusion_TU_058 1 + -chrIV 578593 580533 Fusion_TU_059 1 + -chrIV 580126 582372 Fusion_TU_060 1 + -chrIV 591629 592762 Fusion_TU_061 3 + -chrIV 598411 602138 Fusion_TU_062 1 + -chrIV 631014 636181 Fusion_TU_063 9 + -chrIV 703141 704495 Fusion_TU_064 9 + -chrIV 704406 709304 Fusion_TU_065 24 + -chrIV 779819 782056 Fusion_TU_066 1 + -chrIV 915456 917283 Fusion_TU_067 1 + -chrIV 992840 994150 Fusion_TU_068 1 + -chrIV 1008971 1011412 Fusion_TU_069 8 + -chrIV 1020616 1023107 Fusion_TU_070 1 + -chrIV 1135766 1140598 Fusion_TU_071 5 + -chrIV 1140809 1144924 Fusion_TU_072 11 + -chrIV 1141042 1146132 Fusion_TU_073 1 + -chrIV 1145067 1147240 Fusion_TU_074 2 + -chrIV 1226757 1229209 Fusion_TU_075 1 + -chrIV 1270184 1272257 Fusion_TU_076 1 + -chrIV 1289365 1292357 Fusion_TU_077 1 + -chrIV 1294666 1296792 Fusion_TU_078 2 + -chrIV 1476866 1480212 Fusion_TU_079 6 + -chrIV 1510834 1513870 Fusion_TU_080 3 + -chrIV 67538 70329 Fusion_TU_081 4 - -chrIV 213202 215669 Fusion_TU_082 1 - -chrIV 312826 315958 Fusion_TU_083 1 - -chrIV 332995 334443 Fusion_TU_084 3 - -chrIV 333975 336659 Fusion_TU_085 1 - -chrIV 364851 366172 Fusion_TU_086 10 - -chrIV 592594 593434 Fusion_TU_087 3 - -chrIV 607068 610168 Fusion_TU_088 13 - -chrIV 652106 653136 Fusion_TU_089 1 - -chrIV 713192 716651 Fusion_TU_090 1 - -chrIV 733445 735220 Fusion_TU_091 1 - -chrIV 734698 740046 Fusion_TU_092 2 - -chrIV 766632 769038 Fusion_TU_093 1 - -chrIV 780176 784258 Fusion_TU_094 1 - -chrIV 830470 832576 Fusion_TU_095 1 - -chrIV 1013256 1014569 Fusion_TU_096 2 - -chrIV 1024894 1030275 Fusion_TU_097 2 - -chrIV 1045389 1050221 Fusion_TU_098 17 - -chrIV 1105998 1108522 Fusion_TU_099 12 - -chrIV 1112279 1116717 Fusion_TU_100 1 - -chrIV 1220967 1223739 Fusion_TU_101 2 - -chrIV 1315033 1319235 Fusion_TU_102 1 - -chrIV 1324319 1328342 Fusion_TU_103 2 - -chrIV 1450104 1455897 Fusion_TU_104 1 - -chrIV 1487501 1489844 Fusion_TU_105 1 - -chrIV 1515324 1517759 Fusion_TU_106 3 - -chrV 26126 29622 Fusion_TU_107 2 + -chrV 56759 59309 Fusion_TU_108 1 + -chrV 80441 86368 Fusion_TU_109 1 + -chrV 141638 144060 Fusion_TU_110 23 + -chrV 159570 164382 Fusion_TU_111 4 + -chrV 192400 194323 Fusion_TU_112 3 + -chrV 195819 198646 Fusion_TU_113 1 + -chrV 328436 332379 Fusion_TU_114 1 + -chrV 416755 420987 Fusion_TU_115 4 + -chrV 449289 455161 Fusion_TU_116 1 + -chrV 512442 517671 Fusion_TU_117 4 + -chrV 540722 545173 Fusion_TU_118 4 + -chrV 9551 11314 Fusion_TU_119 1 - -chrV 256211 259567 Fusion_TU_120 1 - -chrV 428011 430892 Fusion_TU_121 1 - -chrVI 65286 68817 Fusion_TU_122 2 + -chrVI 123354 129988 Fusion_TU_123 1 + -chrVI 131665 134372 Fusion_TU_124 30 + -chrVI 162414 166658 Fusion_TU_125 1 + -chrVI 252088 253372 Fusion_TU_126 2 + -chrVI 261280 261924 Fusion_TU_127 1 + -chrVI 43467 47778 Fusion_TU_128 1 - -chrVI 68890 74596 Fusion_TU_129 3 - -chrVI 79267 81911 Fusion_TU_130 1 - -chrVI 176400 177548 Fusion_TU_131 1 - -chrVI 182156 184284 Fusion_TU_132 1 - -chrVII 35587 37680 Fusion_TU_133 4 + -chrVII 49548 52546 Fusion_TU_134 12 + -chrVII 74912 78009 Fusion_TU_135 1 + -chrVII 91447 94583 Fusion_TU_136 1 + -chrVII 95818 98718 Fusion_TU_137 1 + -chrVII 122600 124348 Fusion_TU_138 1 + -chrVII 124573 131268 Fusion_TU_139 1 + -chrVII 131480 139664 Fusion_TU_140 4 + -chrVII 167053 170959 Fusion_TU_141 1 + -chrVII 167846 171217 Fusion_TU_142 9 + -chrVII 254575 257022 Fusion_TU_143 1 + -chrVII 288429 291742 Fusion_TU_144 1 + -chrVII 392780 394927 Fusion_TU_145 2 + -chrVII 398170 400549 Fusion_TU_146 651 + -chrVII 461611 465192 Fusion_TU_147 12 + -chrVII 465730 468896 Fusion_TU_148 17 + -chrVII 542176 544301 Fusion_TU_149 1 + -chrVII 662088 666167 Fusion_TU_150 13 + -chrVII 678650 682399 Fusion_TU_151 7 + -chrVII 690016 693176 Fusion_TU_152 9 + -chrVII 717293 720143 Fusion_TU_153 1 + -chrVII 720356 724868 Fusion_TU_154 21 + -chrVII 774786 777916 Fusion_TU_155 17 + -chrVII 905190 908880 Fusion_TU_156 138 + -chrVII 31816 35273 Fusion_TU_157 2 - -chrVII 73712 74752 Fusion_TU_158 1 - -chrVII 80519 82304 Fusion_TU_159 1 - -chrVII 163319 166082 Fusion_TU_160 1 - -chrVII 187453 190903 Fusion_TU_161 24 - -chrVII 225934 228347 Fusion_TU_162 1 - -chrVII 232375 235993 Fusion_TU_163 1 - -chrVII 269112 270750 Fusion_TU_164 1 - -chrVII 330967 334655 Fusion_TU_165 4 - -chrVII 457073 459700 Fusion_TU_166 4 - -chrVII 507947 511046 Fusion_TU_167 1 - -chrVII 558157 560049 Fusion_TU_168 1 - -chrVII 637665 640405 Fusion_TU_169 3 - -chrVII 755328 757395 Fusion_TU_170 2 - -chrVII 785104 786984 Fusion_TU_171 1 - -chrVII 805032 807701 Fusion_TU_172 1 - -chrVII 940784 944866 Fusion_TU_173 1 - -chrVII 968027 969415 Fusion_TU_174 1 - -chrVII 1057416 1062316 Fusion_TU_175 1 - -chrVIII 122808 124081 Fusion_TU_176 1 + -chrVIII 220054 221354 Fusion_TU_177 1 + -chrVIII 220734 222622 Fusion_TU_178 1 + -chrVIII 245374 248450 Fusion_TU_179 1 + -chrVIII 302664 305501 Fusion_TU_180 1 + -chrVIII 330283 333030 Fusion_TU_181 1 + -chrVIII 352687 354478 Fusion_TU_182 1 + -chrVIII 402920 406264 Fusion_TU_183 3 + -chrVIII 422893 424561 Fusion_TU_184 10 + -chrVIII 461682 463817 Fusion_TU_185 1 + -chrVIII 517509 519406 Fusion_TU_186 1 + -chrVIII 27777 32775 Fusion_TU_187 5 - -chrVIII 36317 39498 Fusion_TU_188 2 - -chrVIII 56498 59010 Fusion_TU_189 3 - -chrVIII 113396 115936 Fusion_TU_190 1 - -chrVIII 197177 201339 Fusion_TU_191 1 - -chrVIII 252229 255813 Fusion_TU_192 5 - -chrVIII 381702 382795 Fusion_TU_193 204 - -chrVIII 383488 386979 Fusion_TU_194 1 - -chrVIII 420220 422421 Fusion_TU_195 25 - -chrVIII 429600 436813 Fusion_TU_196 1 - -chrIX 102644 105835 Fusion_TU_197 16 + -chrIX 155189 157304 Fusion_TU_198 1 + -chrIX 33558 35925 Fusion_TU_199 5 - -chrIX 51412 54312 Fusion_TU_200 13 - -chrIX 88610 92838 Fusion_TU_201 2 - -chrIX 144071 148889 Fusion_TU_202 7 - -chrIX 197857 200194 Fusion_TU_203 2 - -chrIX 200432 203302 Fusion_TU_204 5 - -chrIX 201168 204759 Fusion_TU_205 1 - -chrIX 214872 216490 Fusion_TU_206 8 - -chrIX 230143 232405 Fusion_TU_207 1 - -chrIX 243925 245579 Fusion_TU_208 5 - -chrIX 287434 290103 Fusion_TU_209 2 - -chrIX 289172 291778 Fusion_TU_210 2 - -chrIX 295961 300066 Fusion_TU_211 7 - -chrX 37911 40064 Fusion_TU_212 11 + -chrX 239324 242101 Fusion_TU_213 5 + -chrX 245545 247046 Fusion_TU_214 1 + -chrX 460340 462526 Fusion_TU_215 3 + -chrX 528684 531440 Fusion_TU_216 1 + -chrX 637024 638278 Fusion_TU_217 1 + -chrX 705685 708773 Fusion_TU_218 7 + -chrX 718221 721389 Fusion_TU_219 1 + -chrX 41213 44122 Fusion_TU_220 2 - -chrX 251678 254488 Fusion_TU_221 3 - -chrX 313916 315591 Fusion_TU_222 1 - -chrX 368373 373905 Fusion_TU_223 7 - -chrX 464286 467054 Fusion_TU_224 1 - -chrX 467130 469606 Fusion_TU_225 2 - -chrX 570893 572966 Fusion_TU_226 1 - -chrX 580286 582396 Fusion_TU_227 1 - -chrX 610461 612085 Fusion_TU_228 1 - -chrX 643385 646524 Fusion_TU_229 1 - -chrXI 18656 21221 Fusion_TU_230 2 + -chrXI 47146 49009 Fusion_TU_231 4 + -chrXI 48161 50865 Fusion_TU_232 1 + -chrXI 50018 53477 Fusion_TU_233 12 + -chrXI 94144 98443 Fusion_TU_234 1 + -chrXI 208162 210304 Fusion_TU_235 20 + -chrXI 231954 235859 Fusion_TU_236 1 + -chrXI 246171 248884 Fusion_TU_237 1 + -chrXI 248657 253526 Fusion_TU_238 1 + -chrXI 288821 292948 Fusion_TU_239 1 + -chrXI 296394 299166 Fusion_TU_240 27 + -chrXI 307275 309777 Fusion_TU_241 1 + -chrXI 317595 320985 Fusion_TU_242 15 + -chrXI 323626 326360 Fusion_TU_243 1 + -chrXI 371726 375286 Fusion_TU_244 2 + -chrXI 402541 405243 Fusion_TU_245 1 + -chrXI 446689 447700 Fusion_TU_246 1 + -chrXI 599831 603293 Fusion_TU_247 3 + -chrXI 619647 625622 Fusion_TU_248 3 + -chrXI 625241 626329 Fusion_TU_249 1 + -chrXI 77989 79317 Fusion_TU_250 1 - -chrXI 137236 138685 Fusion_TU_251 2 - -chrXI 163009 164409 Fusion_TU_252 1 - -chrXI 184564 185936 Fusion_TU_253 1 - -chrXI 253541 256516 Fusion_TU_254 1 - -chrXI 338655 339516 Fusion_TU_255 1 - -chrXI 420061 421744 Fusion_TU_256 1 - -chrXI 446195 448045 Fusion_TU_257 1 - -chrXI 461496 463503 Fusion_TU_258 1 - -chrXI 603093 605432 Fusion_TU_259 1 - -chrXII 164383 167264 Fusion_TU_260 1 + -chrXII 280717 281489 Fusion_TU_261 1 + -chrXII 341297 343062 Fusion_TU_262 222 + -chrXII 434609 437536 Fusion_TU_263 7 + -chrXII 640271 642439 Fusion_TU_264 2 + -chrXII 646633 651162 Fusion_TU_265 1 + -chrXII 658485 659889 Fusion_TU_266 281 + -chrXII 691533 695071 Fusion_TU_267 1 + -chrXII 924952 928081 Fusion_TU_268 19 + -chrXII 945259 948146 Fusion_TU_269 1 + -chrXII 1028836 1030622 Fusion_TU_270 1 + -chrXII 40859 43771 Fusion_TU_271 3 - -chrXII 52756 54651 Fusion_TU_272 1 - -chrXII 97930 100194 Fusion_TU_273 1 - -chrXII 105537 109027 Fusion_TU_274 13 - -chrXII 181596 184951 Fusion_TU_275 1 - -chrXII 228773 230484 Fusion_TU_276 1 - -chrXII 231594 233298 Fusion_TU_277 1 - -chrXII 267718 270801 Fusion_TU_278 3 - -chrXII 280937 282212 Fusion_TU_279 1 - -chrXII 451788 464316 Fusion_TU_280 2 - -chrXII 499448 501091 Fusion_TU_281 25 - -chrXII 500359 502170 Fusion_TU_282 1 - -chrXII 512841 514779 Fusion_TU_283 30 - -chrXII 628601 633363 Fusion_TU_284 1 - -chrXII 708145 710531 Fusion_TU_285 251 - -chrXII 718130 720082 Fusion_TU_286 2 - -chrXII 719602 721454 Fusion_TU_287 3 - -chrXII 735032 737588 Fusion_TU_288 212 - -chrXII 760303 764208 Fusion_TU_289 1 - -chrXII 852057 854330 Fusion_TU_290 1 - -chrXII 1038913 1043045 Fusion_TU_291 1 - -chrXIII 43996 46041 Fusion_TU_292 1 + -chrXIII 54731 57876 Fusion_TU_293 1 + -chrXIII 70232 74036 Fusion_TU_294 25 + -chrXIII 159348 162124 Fusion_TU_295 1 + -chrXIII 214149 217156 Fusion_TU_296 1 + -chrXIII 413110 416150 Fusion_TU_297 1 + -chrXIII 434111 436035 Fusion_TU_298 3 + -chrXIII 439188 442852 Fusion_TU_299 9 + -chrXIII 465944 468401 Fusion_TU_300 15 + -chrXIII 511269 512202 Fusion_TU_301 11 + -chrXIII 511986 513355 Fusion_TU_302 1 + -chrXIII 514429 520643 Fusion_TU_303 1 + -chrXIII 575017 578801 Fusion_TU_304 3 + -chrXIII 650024 652011 Fusion_TU_305 2 + -chrXIII 659471 662405 Fusion_TU_306 2 + -chrXIII 695924 698503 Fusion_TU_307 1 + -chrXIII 732380 736824 Fusion_TU_308 1 + -chrXIII 775975 777822 Fusion_TU_309 3 + -chrXIII 863126 864406 Fusion_TU_310 1 + -chrXIII 901665 903948 Fusion_TU_311 3 + -chrXIII 18843 21723 Fusion_TU_312 1 - -chrXIII 57745 62262 Fusion_TU_313 1 - -chrXIII 62530 67587 Fusion_TU_314 4 - -chrXIII 174098 178178 Fusion_TU_315 6 - -chrXIII 251109 252339 Fusion_TU_316 1 - -chrXIII 302597 305911 Fusion_TU_317 16 - -chrXIII 669757 674110 Fusion_TU_318 1 - -chrXIII 685741 688847 Fusion_TU_319 1 - -chrXIII 721530 723105 Fusion_TU_320 3 - -chrXIII 762986 768110 Fusion_TU_321 1 - -chrXIII 809453 811406 Fusion_TU_322 1 - -chrXIII 895641 897429 Fusion_TU_323 1 - -chrXIV 24015 27298 Fusion_TU_324 81 + -chrXIV 184830 185835 Fusion_TU_325 1 + -chrXIV 212533 216004 Fusion_TU_326 1 + -chrXIV 284254 287678 Fusion_TU_327 1 + -chrXIV 351643 352705 Fusion_TU_328 1 + -chrXIV 355863 359032 Fusion_TU_329 1 + -chrXIV 366143 368484 Fusion_TU_330 1 + -chrXIV 444836 449586 Fusion_TU_331 1 + -chrXIV 466248 470060 Fusion_TU_332 52 + -chrXIV 491490 493686 Fusion_TU_333 2 + -chrXIV 500930 503608 Fusion_TU_334 167 + -chrXIV 529830 532444 Fusion_TU_335 3 + -chrXIV 553333 556886 Fusion_TU_336 1 + -chrXIV 662692 665074 Fusion_TU_337 1 + -chrXIV 664247 667328 Fusion_TU_338 1 + -chrXIV 699683 703433 Fusion_TU_339 1 + -chrXIV 706112 708339 Fusion_TU_340 1 + -chrXIV 707774 711415 Fusion_TU_341 7 + -chrXIV 156485 157895 Fusion_TU_342 1 - -chrXIV 316056 318851 Fusion_TU_343 6 - -chrXIV 347542 349775 Fusion_TU_344 2 - -chrXIV 349737 351448 Fusion_TU_345 1 - -chrXIV 368374 372027 Fusion_TU_346 1 - -chrXIV 371686 373627 Fusion_TU_347 1 - -chrXIV 372371 374713 Fusion_TU_348 1 - -chrXIV 476831 479206 Fusion_TU_349 4 - -chrXIV 586389 587706 Fusion_TU_350 1 - -chrXIV 587002 591210 Fusion_TU_351 1 - -chrXIV 609579 613191 Fusion_TU_352 1 - -chrXIV 618451 619693 Fusion_TU_353 287 - -chrXIV 654565 661909 Fusion_TU_354 14 - -chrXIV 692853 694833 Fusion_TU_355 1 - -chrXIV 694207 695344 Fusion_TU_356 1 - -chrXIV 716316 719073 Fusion_TU_357 76 - -chrXIV 718614 719650 Fusion_TU_358 1 - -chrXIV 774669 778887 Fusion_TU_359 1 - -chrXV 2054 4123 Fusion_TU_360 1 + -chrXV 7029 9102 Fusion_TU_361 1 + -chrXV 44054 45754 Fusion_TU_362 1 + -chrXV 70289 72777 Fusion_TU_363 1 + -chrXV 87476 89588 Fusion_TU_364 119 + -chrXV 96651 99584 Fusion_TU_365 1 + -chrXV 97512 101264 Fusion_TU_366 4 + -chrXV 101480 103350 Fusion_TU_367 30 + -chrXV 219137 223050 Fusion_TU_368 3 + -chrXV 226921 228030 Fusion_TU_369 1 + -chrXV 234748 238410 Fusion_TU_370 10 + -chrXV 256350 259181 Fusion_TU_371 14 + -chrXV 364320 367063 Fusion_TU_372 4 + -chrXV 400343 402739 Fusion_TU_373 1 + -chrXV 405600 408143 Fusion_TU_374 1 + -chrXV 412850 414198 Fusion_TU_375 1 + -chrXV 444136 445969 Fusion_TU_376 3 + -chrXV 474591 476967 Fusion_TU_377 10 + -chrXV 525175 528777 Fusion_TU_378 8 + -chrXV 549349 550385 Fusion_TU_379 1 + -chrXV 573103 577798 Fusion_TU_380 1 + -chrXV 578235 578619 Fusion_TU_381 1 + -chrXV 622596 623506 Fusion_TU_382 9 + -chrXV 681111 682177 Fusion_TU_383 2 + -chrXV 721921 725447 Fusion_TU_384 1 + -chrXV 811264 812279 Fusion_TU_385 1 + -chrXV 841271 842682 Fusion_TU_386 1 + -chrXV 842402 843798 Fusion_TU_387 1 + -chrXV 848429 850123 Fusion_TU_388 1 + -chrXV 849624 850932 Fusion_TU_389 7 + -chrXV 882777 887966 Fusion_TU_390 1 + -chrXV 884410 888185 Fusion_TU_391 4 + -chrXV 970271 976247 Fusion_TU_392 1 + -chrXV 1025980 1027156 Fusion_TU_393 1 + -chrXV 1044719 1048108 Fusion_TU_394 4 + -chrXV 1359 3301 Fusion_TU_395 1 - -chrXV 155197 160633 Fusion_TU_396 1 - -chrXV 202628 205918 Fusion_TU_397 1 - -chrXV 251106 253228 Fusion_TU_398 1 - -chrXV 368713 370883 Fusion_TU_399 2 - -chrXV 372642 375888 Fusion_TU_400 1 - -chrXV 392346 397341 Fusion_TU_401 2 - -chrXV 426502 428147 Fusion_TU_402 1 - -chrXV 552110 554630 Fusion_TU_403 3 - -chrXV 811444 813279 Fusion_TU_404 1 - -chrXV 838945 842183 Fusion_TU_405 1 - -chrXV 889761 892259 Fusion_TU_406 6 - -chrXV 898845 900618 Fusion_TU_407 5 - -chrXV 1028080 1034316 Fusion_TU_408 1 - -chrXV 1060285 1064401 Fusion_TU_409 2 - -chrXVI 22877 26169 Fusion_TU_410 1 + -chrXVI 30056 32904 Fusion_TU_411 19 + -chrXVI 99404 101470 Fusion_TU_412 5 + -chrXVI 104962 105929 Fusion_TU_413 8 + -chrXVI 106140 108230 Fusion_TU_414 4 + -chrXVI 121739 125696 Fusion_TU_415 62 + -chrXVI 135776 138320 Fusion_TU_416 3 + -chrXVI 143389 147339 Fusion_TU_417 1 + -chrXVI 176204 179129 Fusion_TU_418 21 + -chrXVI 203298 207815 Fusion_TU_419 1 + -chrXVI 301588 304114 Fusion_TU_420 2 + -chrXVI 379635 381907 Fusion_TU_421 1 + -chrXVI 381950 384515 Fusion_TU_422 5 + -chrXVI 458740 460705 Fusion_TU_423 2 + -chrXVI 467155 472102 Fusion_TU_424 1 + -chrXVI 482487 486243 Fusion_TU_425 3 + -chrXVI 506614 510607 Fusion_TU_426 7 + -chrXVI 657467 661129 Fusion_TU_427 1 + -chrXVI 671088 673553 Fusion_TU_428 3 + -chrXVI 725156 728759 Fusion_TU_429 3 + -chrXVI 752230 754437 Fusion_TU_430 26 + -chrXVI 753255 758453 Fusion_TU_431 13 + -chrXVI 797522 798991 Fusion_TU_432 3 + -chrXVI 17390 21838 Fusion_TU_433 1 - -chrXVI 169721 172768 Fusion_TU_434 1 - -chrXVI 194253 195480 Fusion_TU_435 3 - -chrXVI 298467 301359 Fusion_TU_436 2 - -chrXVI 363181 364785 Fusion_TU_437 1 - -chrXVI 368017 370024 Fusion_TU_438 2 - -chrXVI 424146 425904 Fusion_TU_439 3 - -chrXVI 443589 444262 Fusion_TU_440 4 - -chrXVI 514429 517154 Fusion_TU_441 6 - -chrXVI 575121 575914 Fusion_TU_442 2 - -chrXVI 575543 581230 Fusion_TU_443 2 - -chrXVI 582221 584152 Fusion_TU_444 3 - -chrXVI 592187 593944 Fusion_TU_445 2 - -chrXVI 718631 720489 Fusion_TU_446 1 - -chrXVI 850657 856122 Fusion_TU_447 2 - -chrXVI 886299 888729 Fusion_TU_448 11 - -chrXVI 935938 939779 Fusion_TU_449 1 - -chrM 58007 61163 Fusion_TU_450 1 + -chrIV 570565 574139 Fusion_TU_451 37 + -chrIV 219606 221820 Fusion_TU_452 11 - -chrX 181390 184286 Fusion_TU_453 9 - -chrX 442672 454729 Fusion_TU_454 3 - -chrXI 100345 106913 Fusion_TU_455 166 + -chrXII 669201 672902 Fusion_TU_456 5 + -chrXII 41154 46434 Fusion_TU_457 3 - -chrXII 710768 713178 Fusion_TU_458 341 - -chrXIII 892672 896714 Fusion_TU_459 140 - -chrXIV 462302 466141 Fusion_TU_460 20 + -chrXV 30512 35505 Fusion_TU_461 2 + -chrXV 254267 256648 Fusion_TU_462 3 + -chrXV 490000 492967 Fusion_TU_463 4 - -chrXV 939550 943397 Fusion_TU_464 3 - -chrXVI 781999 787659 Fusion_TU_465 5 + diff --git a/results/2022-1201/files_features/Ivanov-et-al/fusion_yeast_transcripts.bed b/results/2022-1201/files_features/Ivanov-et-al/fusion_yeast_transcripts.bed deleted file mode 100644 index 6be9588..0000000 --- a/results/2022-1201/files_features/Ivanov-et-al/fusion_yeast_transcripts.bed +++ /dev/null @@ -1,1193 +0,0 @@ -chrI 34258 36390 Fusion_TU_001_tx_1 1 + 34258 36390 . 1 2133 0 -chrI 77432 80745 Fusion_TU_002_tx_1 1 + 77432 80745 . 2 984,2266 0,1048 -chrI 106141 110447 Fusion_TU_003_tx_1 1 - 106141 110447 . 1 4307 0 -chrII 45615 47275 Fusion_TU_004_tx_1 1 + 45615 47275 . 1 1661 0 -chrII 48793 51083 Fusion_TU_005_tx_1 1 + 48793 51083 . 1 2291 0 -chrII 84422 87801 Fusion_TU_017_tx_1 1 - 84422 87801 . 1 3380 0 -chrII 89942 92103 Fusion_TU_006_tx_1 1 + 89942 92103 . 1 2162 0 -chrII 141344 143708 Fusion_TU_007_tx_1 1 + 141344 143708 . 1 2365 0 -chrII 150299 153689 Fusion_TU_018_tx_1 1 - 150299 153689 . 1 3391 0 -chrII 166097 167364 Fusion_TU_008_tx_1 2 + 166097 167364 . 1 1268 0 -chrII 166262 167453 Fusion_TU_008_tx_2 1 + 166262 167453 . 1 1192 0 -chrII 186769 191749 Fusion_TU_019_tx_1 1 - 186769 191749 . 2 3743,1128 0,3853 -chrII 186769 191749 Fusion_TU_019_tx_2 4 - 186769 191749 . 1 4981 0 -chrII 186769 192065 Fusion_TU_019_tx_3 1 - 186769 192065 . 1 5297 0 -chrII 233031 235178 Fusion_TU_009_tx_1 2 + 233031 235178 . 1 2148 0 -chrII 266613 269597 Fusion_TU_020_tx_1 1 - 266613 269597 . 1 2985 0 -chrII 270744 273436 Fusion_TU_021_tx_1 1 - 270744 273436 . 1 2693 0 -chrII 270744 273751 Fusion_TU_021_tx_2 8 - 270744 273751 . 1 3008 0 -chrII 270744 273751 Fusion_TU_021_tx_3 1 - 270744 273751 . 2 1039,1902 0,1106 -chrII 270835 273436 Fusion_TU_021_tx_4 3 - 270835 273436 . 1 2602 0 -chrII 270835 273751 Fusion_TU_021_tx_5 16 - 270835 273751 . 1 2917 0 -chrII 270835 273751 Fusion_TU_021_tx_6 1 - 270835 273751 . 2 179,2685 0,232 -chrII 300149 304795 Fusion_TU_010_tx_1 1 + 300149 304795 . 4 1015,1094,275,2040 0,1084,2241,2607 -chrII 304739 306986 Fusion_TU_022_tx_1 1 - 304739 306986 . 1 2248 0 -chrII 370763 372787 Fusion_TU_023_tx_1 1 - 370763 372787 . 2 829,650 0,1375 -chrII 406111 406827 Fusion_TU_024_tx_1 1 - 406111 406827 . 1 717 0 -chrII 406111 406992 Fusion_TU_024_tx_2 6 - 406111 406992 . 1 882 0 -chrII 406172 406827 Fusion_TU_024_tx_3 1 - 406172 406827 . 1 656 0 -chrII 406172 406992 Fusion_TU_024_tx_4 3 - 406172 406992 . 1 821 0 -chrII 414062 415280 Fusion_TU_025_tx_1 66 - 414062 415280 . 1 1219 0 -chrII 414062 415280 Fusion_TU_025_tx_2 20 - 414062 415280 . 2 692,21 0,1198 -chrII 414062 415280 Fusion_TU_025_tx_3 1 - 414062 415280 . 2 742,117 0,1102 -chrII 414062 415280 Fusion_TU_025_tx_4 1 - 414062 415280 . 2 681,22 0,1197 -chrII 414062 415494 Fusion_TU_025_tx_5 3 - 414062 415494 . 2 692,235 0,1198 -chrII 414062 415494 Fusion_TU_025_tx_6 1 - 414062 415494 . 1 1433 0 -chrII 420068 423080 Fusion_TU_026_tx_1 6 - 420068 423080 . 1 3013 0 -chrII 420068 423348 Fusion_TU_026_tx_2 36 - 420068 423348 . 1 3281 0 -chrII 420068 423348 Fusion_TU_026_tx_3 1 - 420068 423348 . 2 1058,305 0,2976 -chrII 420068 423348 Fusion_TU_026_tx_4 1 - 420068 423348 . 2 755,1499 0,1782 -chrII 420068 423348 Fusion_TU_026_tx_5 1 - 420068 423348 . 2 1340,1886 0,1395 -chrII 426031 426900 Fusion_TU_027_tx_1 34 - 426031 426900 . 1 870 0 -chrII 426031 426900 Fusion_TU_027_tx_2 4 - 426031 426900 . 2 486,270 0,600 -chrII 427053 429116 Fusion_TU_028_tx_1 1 - 427053 429116 . 1 2064 0 -chrII 427646 429855 Fusion_TU_029_tx_1 1 - 427646 429855 . 2 227,132 0,2078 -chrII 443745 447402 Fusion_TU_030_tx_1 2 - 443745 447402 . 1 3658 0 -chrII 452621 453836 Fusion_TU_011_tx_1 1 + 452621 453836 . 1 1216 0 -chrII 483803 484876 Fusion_TU_031_tx_1 1 - 483803 484876 . 1 1074 0 -chrII 548262 549532 Fusion_TU_032_tx_1 2 - 548262 549532 . 1 1271 0 -chrII 553431 554383 Fusion_TU_033_tx_1 5 - 553431 554383 . 1 953 0 -chrII 553431 554383 Fusion_TU_033_tx_2 1 - 553431 554383 . 2 243,163 0,790 -chrII 553431 554603 Fusion_TU_033_tx_3 3 - 553431 554603 . 1 1173 0 -chrII 553431 554603 Fusion_TU_033_tx_4 1 - 553431 554603 . 2 904,174 0,999 -chrII 553431 554841 Fusion_TU_033_tx_5 1 - 553431 554841 . 1 1411 0 -chrII 553431 555140 Fusion_TU_033_tx_6 1 - 553431 555140 . 1 1710 0 -chrII 553431 555232 Fusion_TU_033_tx_7 1 - 553431 555232 . 1 1802 0 -chrII 553431 555674 Fusion_TU_033_tx_8 1 - 553431 555674 . 1 2244 0 -chrII 573715 577446 Fusion_TU_034_tx_1 1 - 573715 577446 . 1 3732 0 -chrII 579010 582195 Fusion_TU_035_tx_1 1 - 579010 582195 . 1 3186 0 -chrII 633574 636656 Fusion_TU_012_tx_1 2 + 633574 636656 . 1 3083 0 -chrII 714725 718085 Fusion_TU_036_tx_1 1 - 714725 718085 . 1 3361 0 -chrII 722592 723728 Fusion_TU_013_tx_1 2 + 722592 723728 . 1 1137 0 -chrII 732511 735568 Fusion_TU_037_tx_1 2 - 732511 735568 . 1 3058 0 -chrII 739828 741721 Fusion_TU_014_tx_1 1 + 739828 741721 . 2 1006,836 0,1058 -chrII 771237 773812 Fusion_TU_015_tx_1 1 + 771237 773812 . 1 2576 0 -chrII 774686 777969 Fusion_TU_016_tx_1 1 + 774686 777969 . 1 3284 0 -chrII 774686 777969 Fusion_TU_016_tx_2 1 + 774686 777969 . 2 817,1562 0,1722 -chrIII 70945 73421 Fusion_TU_038_tx_1 1 + 70945 73421 . 1 2477 0 -chrIII 102068 105564 Fusion_TU_044_tx_1 2 - 102068 105564 . 1 3497 0 -chrIII 106997 108929 Fusion_TU_039_tx_1 1 + 106997 108929 . 2 195,1642 0,291 -chrIII 158052 159311 Fusion_TU_040_tx_1 1 + 158052 159311 . 1 1260 0 -chrIII 158295 159137 Fusion_TU_045_tx_1 4 - 158295 159137 . 1 843 0 -chrIII 160606 163219 Fusion_TU_046_tx_1 1 - 160606 163219 . 1 2614 0 -chrIII 160742 163025 Fusion_TU_046_tx_2 1 - 160742 163025 . 1 2284 0 -chrIII 176578 177696 Fusion_TU_047_tx_1 3 - 176578 177696 . 1 1119 0 -chrIII 177397 178798 Fusion_TU_048_tx_1 1 - 177397 178798 . 1 1402 0 -chrIII 177397 178798 Fusion_TU_048_tx_2 1 - 177397 178798 . 2 510,585 0,817 -chrIII 209803 211635 Fusion_TU_049_tx_1 2 - 209803 211635 . 1 1833 0 -chrIII 228286 231331 Fusion_TU_041_tx_1 4 + 228286 231331 . 1 3046 0 -chrIII 233052 236332 Fusion_TU_050_tx_1 1 - 233052 236332 . 3 1823,165,1082 0,1896,2199 -chrIII 233052 236421 Fusion_TU_050_tx_2 2 - 233052 236421 . 1 3370 0 -chrIII 233052 236829 Fusion_TU_050_tx_3 1 - 233052 236829 . 1 3778 0 -chrIII 258858 260079 Fusion_TU_042_tx_1 2 + 258858 260079 . 1 1222 0 -chrIII 258993 260079 Fusion_TU_042_tx_2 1 + 258993 260079 . 1 1087 0 -chrIII 280087 286528 Fusion_TU_043_tx_1 2 + 280087 286528 . 1 6442 0 -chrIV 67539 70329 Fusion_TU_081_tx_1 1 - 67539 70329 . 2 638,2078 0,713 -chrIV 67539 70329 Fusion_TU_081_tx_2 1 - 67539 70329 . 1 2791 0 -chrIV 67926 70329 Fusion_TU_081_tx_3 1 - 67926 70329 . 1 2404 0 -chrIV 67965 70329 Fusion_TU_081_tx_4 1 - 67965 70329 . 1 2365 0 -chrIV 94106 95966 Fusion_TU_051_tx_1 8 + 94106 95966 . 1 1861 0 -chrIV 94186 95966 Fusion_TU_051_tx_2 2 + 94186 95966 . 1 1781 0 -chrIV 98430 100506 Fusion_TU_052_tx_1 4 + 98430 100506 . 1 2077 0 -chrIV 98430 100506 Fusion_TU_052_tx_2 1 + 98430 100506 . 2 691,1285 0,792 -chrIV 133405 135556 Fusion_TU_053_tx_1 1 + 133405 135556 . 1 2152 0 -chrIV 213203 215669 Fusion_TU_082_tx_1 1 - 213203 215669 . 1 2467 0 -chrIV 219607 221820 Fusion_TU_452_tx_1 3 - 219607 221820 . 1 2214 0 -chrIV 221043 221820 Fusion_TU_452_tx_2 8 - 221043 221820 . 1 778 0 -chrIV 229105 230625 Fusion_TU_054_tx_1 1 + 229105 230625 . 1 1521 0 -chrIV 240214 242332 Fusion_TU_055_tx_1 1 + 240214 242332 . 1 2119 0 -chrIV 240561 242332 Fusion_TU_055_tx_2 2 + 240561 242332 . 1 1772 0 -chrIV 251528 255077 Fusion_TU_056_tx_1 1 + 251528 255077 . 1 3550 0 -chrIV 312827 315958 Fusion_TU_083_tx_1 1 - 312827 315958 . 2 1218,1622 0,1510 -chrIV 332996 334443 Fusion_TU_084_tx_1 3 - 332996 334443 . 1 1448 0 -chrIV 333976 336659 Fusion_TU_085_tx_1 1 - 333976 336659 . 1 2684 0 -chrIV 351426 355447 Fusion_TU_057_tx_1 1 + 351426 355447 . 1 4022 0 -chrIV 364852 365974 Fusion_TU_086_tx_1 9 - 364852 365974 . 1 1123 0 -chrIV 364852 366172 Fusion_TU_086_tx_2 1 - 364852 366172 . 1 1321 0 -chrIV 432301 434109 Fusion_TU_058_tx_1 1 + 432301 434109 . 1 1809 0 -chrIV 570566 573771 Fusion_TU_451_tx_1 2 + 570566 573771 . 1 3206 0 -chrIV 570566 573786 Fusion_TU_451_tx_2 3 + 570566 573786 . 1 3221 0 -chrIV 570566 573788 Fusion_TU_451_tx_3 2 + 570566 573788 . 1 3223 0 -chrIV 570566 573795 Fusion_TU_451_tx_4 1 + 570566 573795 . 1 3230 0 -chrIV 570566 573808 Fusion_TU_451_tx_5 1 + 570566 573808 . 1 3243 0 -chrIV 570566 573817 Fusion_TU_451_tx_6 3 + 570566 573817 . 1 3252 0 -chrIV 570566 573856 Fusion_TU_451_tx_7 1 + 570566 573856 . 1 3291 0 -chrIV 570566 573881 Fusion_TU_451_tx_8 1 + 570566 573881 . 1 3316 0 -chrIV 570566 574139 Fusion_TU_451_tx_9 5 + 570566 574139 . 1 3574 0 -chrIV 570566 574139 Fusion_TU_451_tx_10 1 + 570566 574139 . 2 331,1889 0,1685 -chrIV 570566 574139 Fusion_TU_451_tx_11 1 + 570566 574139 . 2 1193,2314 0,1260 -chrIV 570566 574139 Fusion_TU_451_tx_12 1 + 570566 574139 . 2 1235,2267 0,1307 -chrIV 570763 573786 Fusion_TU_451_tx_13 1 + 570763 573786 . 2 1558,1334 0,1690 -chrIV 570763 573799 Fusion_TU_451_tx_14 1 + 570763 573799 . 1 3037 0 -chrIV 570974 573785 Fusion_TU_451_tx_15 1 + 570974 573785 . 1 2812 0 -chrIV 570974 573799 Fusion_TU_451_tx_16 1 + 570974 573799 . 2 1541,1221 0,1605 -chrIV 570974 573799 Fusion_TU_451_tx_17 1 + 570974 573799 . 1 2826 0 -chrIV 570974 573800 Fusion_TU_451_tx_18 1 + 570974 573800 . 1 2827 0 -chrIV 570974 573808 Fusion_TU_451_tx_19 1 + 570974 573808 . 1 2835 0 -chrIV 570974 573817 Fusion_TU_451_tx_20 1 + 570974 573817 . 1 2844 0 -chrIV 570974 574139 Fusion_TU_451_tx_21 2 + 570974 574139 . 1 3166 0 -chrIV 571168 574139 Fusion_TU_451_tx_22 1 + 571168 574139 . 1 2972 0 -chrIV 572254 573778 Fusion_TU_451_tx_23 1 + 572254 573778 . 1 1525 0 -chrIV 572254 573787 Fusion_TU_451_tx_24 1 + 572254 573787 . 1 1534 0 -chrIV 572254 573800 Fusion_TU_451_tx_25 1 + 572254 573800 . 1 1547 0 -chrIV 572254 574139 Fusion_TU_451_tx_26 1 + 572254 574139 . 1 1886 0 -chrIV 578594 580533 Fusion_TU_059_tx_1 1 + 578594 580533 . 1 1940 0 -chrIV 580127 582372 Fusion_TU_060_tx_1 1 + 580127 582372 . 1 2246 0 -chrIV 591630 592756 Fusion_TU_061_tx_1 1 + 591630 592756 . 1 1127 0 -chrIV 591630 592758 Fusion_TU_061_tx_2 1 + 591630 592758 . 1 1129 0 -chrIV 591630 592762 Fusion_TU_061_tx_3 1 + 591630 592762 . 1 1133 0 -chrIV 592595 593432 Fusion_TU_087_tx_1 1 - 592595 593432 . 1 838 0 -chrIV 592595 593433 Fusion_TU_087_tx_2 1 - 592595 593433 . 1 839 0 -chrIV 592595 593434 Fusion_TU_087_tx_3 1 - 592595 593434 . 1 840 0 -chrIV 598412 602138 Fusion_TU_062_tx_1 1 + 598412 602138 . 1 3727 0 -chrIV 607069 610168 Fusion_TU_088_tx_1 1 - 607069 610168 . 1 3100 0 -chrIV 607231 610168 Fusion_TU_088_tx_2 11 - 607231 610168 . 1 2938 0 -chrIV 607591 610168 Fusion_TU_088_tx_3 1 - 607591 610168 . 1 2578 0 -chrIV 631015 636181 Fusion_TU_063_tx_1 1 + 631015 636181 . 2 3999,1096 0,4071 -chrIV 631015 636181 Fusion_TU_063_tx_2 5 + 631015 636181 . 1 5167 0 -chrIV 631015 636181 Fusion_TU_063_tx_3 1 + 631015 636181 . 2 4206,895 0,4272 -chrIV 631015 636181 Fusion_TU_063_tx_4 1 + 631015 636181 . 2 3841,1271 0,3896 -chrIV 631661 636181 Fusion_TU_063_tx_5 1 + 631661 636181 . 2 510,3934 0,587 -chrIV 652107 653136 Fusion_TU_089_tx_1 1 - 652107 653136 . 1 1030 0 -chrIV 703142 704495 Fusion_TU_064_tx_1 2 + 703142 704495 . 1 1354 0 -chrIV 703228 704274 Fusion_TU_064_tx_2 1 + 703228 704274 . 1 1047 0 -chrIV 703228 704495 Fusion_TU_064_tx_3 6 + 703228 704495 . 1 1268 0 -chrIV 704407 709304 Fusion_TU_065_tx_1 17 + 704407 709304 . 1 4898 0 -chrIV 704407 709304 Fusion_TU_065_tx_2 1 + 704407 709304 . 2 3779,1055 0,3843 -chrIV 704407 709304 Fusion_TU_065_tx_3 1 + 704407 709304 . 2 3375,1458 0,3440 -chrIV 705138 709304 Fusion_TU_065_tx_4 2 + 705138 709304 . 1 4167 0 -chrIV 705404 709304 Fusion_TU_065_tx_5 1 + 705404 709304 . 1 3901 0 -chrIV 705477 709304 Fusion_TU_065_tx_6 2 + 705477 709304 . 1 3828 0 -chrIV 713193 716651 Fusion_TU_090_tx_1 1 - 713193 716651 . 1 3459 0 -chrIV 733446 735220 Fusion_TU_091_tx_1 1 - 733446 735220 . 1 1775 0 -chrIV 734699 740046 Fusion_TU_092_tx_1 1 - 734699 740046 . 2 1225,3587 0,1761 -chrIV 734699 740046 Fusion_TU_092_tx_2 1 - 734699 740046 . 1 5348 0 -chrIV 766633 769038 Fusion_TU_093_tx_1 1 - 766633 769038 . 1 2406 0 -chrIV 779820 782056 Fusion_TU_066_tx_1 1 + 779820 782056 . 1 2237 0 -chrIV 780177 784258 Fusion_TU_094_tx_1 1 - 780177 784258 . 1 4082 0 -chrIV 830471 832576 Fusion_TU_095_tx_1 1 - 830471 832576 . 1 2106 0 -chrIV 915457 917283 Fusion_TU_067_tx_1 1 + 915457 917283 . 1 1827 0 -chrIV 992841 994150 Fusion_TU_068_tx_1 1 + 992841 994150 . 1 1310 0 -chrIV 1008972 1011309 Fusion_TU_069_tx_1 3 + 1008972 1011309 . 1 2338 0 -chrIV 1009277 1011412 Fusion_TU_069_tx_2 1 + 1009277 1011412 . 1 2136 0 -chrIV 1009439 1011309 Fusion_TU_069_tx_3 1 + 1009439 1011309 . 1 1871 0 -chrIV 1009439 1011412 Fusion_TU_069_tx_4 1 + 1009439 1011412 . 1 1974 0 -chrIV 1009689 1011309 Fusion_TU_069_tx_5 2 + 1009689 1011309 . 1 1621 0 -chrIV 1013257 1014569 Fusion_TU_096_tx_1 1 - 1013257 1014569 . 1 1313 0 -chrIV 1013264 1014569 Fusion_TU_096_tx_2 1 - 1013264 1014569 . 1 1306 0 -chrIV 1020617 1023107 Fusion_TU_070_tx_1 1 + 1020617 1023107 . 1 2491 0 -chrIV 1024895 1030275 Fusion_TU_097_tx_1 1 - 1024895 1030275 . 1 5381 0 -chrIV 1024901 1030275 Fusion_TU_097_tx_2 1 - 1024901 1030275 . 1 5375 0 -chrIV 1045390 1048273 Fusion_TU_098_tx_1 1 - 1045390 1048273 . 1 2884 0 -chrIV 1045390 1048504 Fusion_TU_098_tx_2 2 - 1045390 1048504 . 1 3115 0 -chrIV 1045390 1048728 Fusion_TU_098_tx_3 1 - 1045390 1048728 . 1 3339 0 -chrIV 1045390 1048839 Fusion_TU_098_tx_4 1 - 1045390 1048839 . 1 3450 0 -chrIV 1045390 1048964 Fusion_TU_098_tx_5 2 - 1045390 1048964 . 1 3575 0 -chrIV 1045390 1048964 Fusion_TU_098_tx_6 1 - 1045390 1048964 . 2 2992,119 0,3456 -chrIV 1045390 1049446 Fusion_TU_098_tx_7 5 - 1045390 1049446 . 1 4057 0 -chrIV 1045390 1050221 Fusion_TU_098_tx_8 4 - 1045390 1050221 . 1 4832 0 -chrIV 1105999 1108127 Fusion_TU_099_tx_1 10 - 1105999 1108127 . 1 2129 0 -chrIV 1105999 1108522 Fusion_TU_099_tx_2 2 - 1105999 1108522 . 1 2524 0 -chrIV 1112280 1116717 Fusion_TU_100_tx_1 1 - 1112280 1116717 . 1 4438 0 -chrIV 1135767 1140598 Fusion_TU_071_tx_1 4 + 1135767 1140598 . 1 4832 0 -chrIV 1136146 1140598 Fusion_TU_071_tx_2 1 + 1136146 1140598 . 1 4453 0 -chrIV 1140810 1144924 Fusion_TU_072_tx_1 8 + 1140810 1144924 . 1 4115 0 -chrIV 1141043 1144924 Fusion_TU_072_tx_2 1 + 1141043 1144924 . 2 947,2882 0,1000 -chrIV 1141043 1146132 Fusion_TU_073_tx_1 1 + 1141043 1146132 . 2 3344,1659 0,3431 -chrIV 1141409 1144924 Fusion_TU_072_tx_3 2 + 1141409 1144924 . 1 3516 0 -chrIV 1145068 1147240 Fusion_TU_074_tx_1 1 + 1145068 1147240 . 1 2173 0 -chrIV 1145252 1147240 Fusion_TU_074_tx_2 1 + 1145252 1147240 . 1 1989 0 -chrIV 1220968 1223739 Fusion_TU_101_tx_1 2 - 1220968 1223739 . 1 2772 0 -chrIV 1226758 1229209 Fusion_TU_075_tx_1 1 + 1226758 1229209 . 1 2452 0 -chrIV 1270185 1272257 Fusion_TU_076_tx_1 1 + 1270185 1272257 . 1 2073 0 -chrIV 1289366 1292357 Fusion_TU_077_tx_1 1 + 1289366 1292357 . 1 2992 0 -chrIV 1294667 1296792 Fusion_TU_078_tx_1 2 + 1294667 1296792 . 1 2126 0 -chrIV 1315034 1319235 Fusion_TU_102_tx_1 1 - 1315034 1319235 . 1 4202 0 -chrIV 1324320 1327932 Fusion_TU_103_tx_1 1 - 1324320 1327932 . 1 3613 0 -chrIV 1324320 1328342 Fusion_TU_103_tx_2 1 - 1324320 1328342 . 1 4023 0 -chrIV 1450105 1455897 Fusion_TU_104_tx_1 1 - 1450105 1455897 . 2 390,920 0,4873 -chrIV 1476867 1480212 Fusion_TU_079_tx_1 1 + 1476867 1480212 . 1 3346 0 -chrIV 1477165 1480212 Fusion_TU_079_tx_2 4 + 1477165 1480212 . 1 3048 0 -chrIV 1477546 1480212 Fusion_TU_079_tx_3 1 + 1477546 1480212 . 1 2667 0 -chrIV 1487502 1489844 Fusion_TU_105_tx_1 1 - 1487502 1489844 . 1 2343 0 -chrIV 1510835 1513699 Fusion_TU_080_tx_1 2 + 1510835 1513699 . 1 2865 0 -chrIV 1510835 1513870 Fusion_TU_080_tx_2 1 + 1510835 1513870 . 1 3036 0 -chrIV 1515325 1517759 Fusion_TU_106_tx_1 3 - 1515325 1517759 . 1 2435 0 -chrIX 33559 35925 Fusion_TU_199_tx_1 5 - 33559 35925 . 1 2367 0 -chrIX 51413 53753 Fusion_TU_200_tx_1 12 - 51413 53753 . 1 2341 0 -chrIX 51413 54312 Fusion_TU_200_tx_2 1 - 51413 54312 . 1 2900 0 -chrIX 88611 92838 Fusion_TU_201_tx_1 1 - 88611 92838 . 1 4228 0 -chrIX 88883 92838 Fusion_TU_201_tx_2 1 - 88883 92838 . 1 3956 0 -chrIX 102645 105835 Fusion_TU_197_tx_1 15 + 102645 105835 . 1 3191 0 -chrIX 102645 105835 Fusion_TU_197_tx_2 1 + 102645 105835 . 2 982,1570 0,1621 -chrIX 144072 148889 Fusion_TU_202_tx_1 1 - 144072 148889 . 1 4818 0 -chrIX 144269 148889 Fusion_TU_202_tx_2 6 - 144269 148889 . 1 4621 0 -chrIX 155190 157304 Fusion_TU_198_tx_1 1 + 155190 157304 . 2 1020,808 0,1307 -chrIX 197858 200194 Fusion_TU_203_tx_1 2 - 197858 200194 . 1 2337 0 -chrIX 200433 203302 Fusion_TU_204_tx_1 4 - 200433 203302 . 1 2870 0 -chrIX 200878 203302 Fusion_TU_204_tx_2 1 - 200878 203302 . 1 2425 0 -chrIX 201169 204759 Fusion_TU_205_tx_1 1 - 201169 204759 . 1 3591 0 -chrIX 214873 216490 Fusion_TU_206_tx_1 8 - 214873 216490 . 1 1618 0 -chrIX 230144 232405 Fusion_TU_207_tx_1 1 - 230144 232405 . 1 2262 0 -chrIX 243926 245579 Fusion_TU_208_tx_1 1 - 243926 245579 . 2 536,498 0,1156 -chrIX 243926 245579 Fusion_TU_208_tx_2 4 - 243926 245579 . 1 1654 0 -chrIX 287435 290103 Fusion_TU_209_tx_1 2 - 287435 290103 . 1 2669 0 -chrIX 289173 291778 Fusion_TU_210_tx_1 1 - 289173 291778 . 2 1068,1309 0,1297 -chrIX 289173 291778 Fusion_TU_210_tx_2 1 - 289173 291778 . 1 2606 0 -chrIX 295962 300066 Fusion_TU_211_tx_1 6 - 295962 300066 . 1 4105 0 -chrIX 295962 300066 Fusion_TU_211_tx_2 1 - 295962 300066 . 3 2275,273,1147 0,2418,2958 -chrM 58008 61163 Fusion_TU_450_tx_1 1 + 58008 61163 . 1 3156 0 -chrV 9552 11314 Fusion_TU_119_tx_1 1 - 9552 11314 . 1 1763 0 -chrV 26127 29622 Fusion_TU_107_tx_1 1 + 26127 29622 . 1 3496 0 -chrV 26680 29622 Fusion_TU_107_tx_2 1 + 26680 29622 . 1 2943 0 -chrV 56760 59309 Fusion_TU_108_tx_1 1 + 56760 59309 . 1 2550 0 -chrV 80442 86368 Fusion_TU_109_tx_1 1 + 80442 86368 . 2 804,744 0,5183 -chrV 141639 143925 Fusion_TU_110_tx_1 6 + 141639 143925 . 1 2287 0 -chrV 141639 143925 Fusion_TU_110_tx_2 1 + 141639 143925 . 2 1142,1028 0,1259 -chrV 141639 144060 Fusion_TU_110_tx_3 13 + 141639 144060 . 1 2422 0 -chrV 141639 144060 Fusion_TU_110_tx_4 1 + 141639 144060 . 2 1593,760 0,1662 -chrV 141639 144060 Fusion_TU_110_tx_5 1 + 141639 144060 . 2 1138,1150 0,1272 -chrV 141639 144060 Fusion_TU_110_tx_6 1 + 141639 144060 . 2 440,796 0,1626 -chrV 159571 164382 Fusion_TU_111_tx_1 1 + 159571 164382 . 2 3873,766 0,4046 -chrV 160508 164382 Fusion_TU_111_tx_2 2 + 160508 164382 . 1 3875 0 -chrV 160508 164382 Fusion_TU_111_tx_3 1 + 160508 164382 . 2 2123,1677 0,2198 -chrV 192401 194323 Fusion_TU_112_tx_1 3 + 192401 194323 . 1 1923 0 -chrV 195820 198646 Fusion_TU_113_tx_1 1 + 195820 198646 . 1 2827 0 -chrV 256212 259567 Fusion_TU_120_tx_1 1 - 256212 259567 . 1 3356 0 -chrV 328437 332379 Fusion_TU_114_tx_1 1 + 328437 332379 . 1 3943 0 -chrV 416756 420987 Fusion_TU_115_tx_1 2 + 416756 420987 . 1 4232 0 -chrV 416756 420987 Fusion_TU_115_tx_2 1 + 416756 420987 . 2 3724,460 0,3772 -chrV 417595 420987 Fusion_TU_115_tx_3 1 + 417595 420987 . 1 3393 0 -chrV 428012 430892 Fusion_TU_121_tx_1 1 - 428012 430892 . 1 2881 0 -chrV 449290 455161 Fusion_TU_116_tx_1 1 + 449290 455161 . 2 351,944 0,4928 -chrV 512443 517550 Fusion_TU_117_tx_1 1 + 512443 517550 . 3 311,3557,833 0,663,4275 -chrV 512443 517556 Fusion_TU_117_tx_2 1 + 512443 517556 . 1 5114 0 -chrV 512443 517671 Fusion_TU_117_tx_3 1 + 512443 517671 . 1 5229 0 -chrV 512769 517559 Fusion_TU_117_tx_4 1 + 512769 517559 . 1 4791 0 -chrV 540723 545173 Fusion_TU_118_tx_1 1 + 540723 545173 . 2 2090,2219 0,2232 -chrV 540723 545173 Fusion_TU_118_tx_2 1 + 540723 545173 . 2 1204,3131 0,1320 -chrV 540723 545173 Fusion_TU_118_tx_3 2 + 540723 545173 . 1 4451 0 -chrVI 43468 47778 Fusion_TU_128_tx_1 1 - 43468 47778 . 1 4311 0 -chrVI 65287 68817 Fusion_TU_122_tx_1 1 + 65287 68817 . 2 2035,1275 0,2256 -chrVI 65503 68817 Fusion_TU_122_tx_2 1 + 65503 68817 . 1 3315 0 -chrVI 68891 74449 Fusion_TU_129_tx_1 2 - 68891 74449 . 1 5559 0 -chrVI 68891 74596 Fusion_TU_129_tx_2 1 - 68891 74596 . 1 5706 0 -chrVI 79268 81911 Fusion_TU_130_tx_1 1 - 79268 81911 . 1 2644 0 -chrVI 123355 129988 Fusion_TU_123_tx_1 1 + 123355 129988 . 1 6634 0 -chrVI 131666 134372 Fusion_TU_124_tx_1 1 + 131666 134372 . 2 943,1687 0,1020 -chrVI 131666 134372 Fusion_TU_124_tx_2 21 + 131666 134372 . 1 2707 0 -chrVI 131666 134372 Fusion_TU_124_tx_3 1 + 131666 134372 . 2 1503,1146 0,1561 -chrVI 131666 134372 Fusion_TU_124_tx_4 1 + 131666 134372 . 2 1524,1045 0,1662 -chrVI 132124 134372 Fusion_TU_124_tx_5 1 + 132124 134372 . 2 1487,373 0,1876 -chrVI 132124 134372 Fusion_TU_124_tx_6 5 + 132124 134372 . 1 2249 0 -chrVI 162415 166658 Fusion_TU_125_tx_1 1 + 162415 166658 . 1 4244 0 -chrVI 176401 177548 Fusion_TU_131_tx_1 1 - 176401 177548 . 1 1148 0 -chrVI 182157 184284 Fusion_TU_132_tx_1 1 - 182157 184284 . 1 2128 0 -chrVI 252089 253372 Fusion_TU_126_tx_1 2 + 252089 253372 . 1 1284 0 -chrVI 261281 261924 Fusion_TU_127_tx_1 1 + 261281 261924 . 1 644 0 -chrVII 31817 35108 Fusion_TU_157_tx_1 1 - 31817 35108 . 1 3292 0 -chrVII 31817 35273 Fusion_TU_157_tx_2 1 - 31817 35273 . 1 3457 0 -chrVII 35588 37680 Fusion_TU_133_tx_1 3 + 35588 37680 . 1 2093 0 -chrVII 35588 37680 Fusion_TU_133_tx_2 1 + 35588 37680 . 2 1076,861 0,1232 -chrVII 49549 52480 Fusion_TU_134_tx_1 1 + 49549 52480 . 2 1511,1292 0,1640 -chrVII 49549 52480 Fusion_TU_134_tx_2 9 + 49549 52480 . 1 2932 0 -chrVII 49549 52546 Fusion_TU_134_tx_3 2 + 49549 52546 . 1 2998 0 -chrVII 73713 74752 Fusion_TU_158_tx_1 1 - 73713 74752 . 1 1040 0 -chrVII 74913 78009 Fusion_TU_135_tx_1 1 + 74913 78009 . 1 3097 0 -chrVII 80520 82304 Fusion_TU_159_tx_1 1 - 80520 82304 . 1 1785 0 -chrVII 91448 94583 Fusion_TU_136_tx_1 1 + 91448 94583 . 2 1115,1913 0,1223 -chrVII 95819 98718 Fusion_TU_137_tx_1 1 + 95819 98718 . 1 2900 0 -chrVII 122601 124348 Fusion_TU_138_tx_1 1 + 122601 124348 . 1 1748 0 -chrVII 124574 131268 Fusion_TU_139_tx_1 1 + 124574 131268 . 1 6695 0 -chrVII 131481 139664 Fusion_TU_140_tx_1 4 + 131481 139664 . 1 8184 0 -chrVII 163320 166082 Fusion_TU_160_tx_1 1 - 163320 166082 . 1 2763 0 -chrVII 167054 170959 Fusion_TU_141_tx_1 1 + 167054 170959 . 2 301,2965 0,941 -chrVII 167847 171217 Fusion_TU_142_tx_1 8 + 167847 171217 . 1 3371 0 -chrVII 167847 171217 Fusion_TU_142_tx_2 1 + 167847 171217 . 2 1408,1887 0,1484 -chrVII 187454 190903 Fusion_TU_161_tx_1 23 - 187454 190903 . 1 3450 0 -chrVII 187454 190903 Fusion_TU_161_tx_2 1 - 187454 190903 . 2 914,1441 0,2009 -chrVII 225935 228347 Fusion_TU_162_tx_1 1 - 225935 228347 . 1 2413 0 -chrVII 232376 235993 Fusion_TU_163_tx_1 1 - 232376 235993 . 1 3618 0 -chrVII 254576 257022 Fusion_TU_143_tx_1 1 + 254576 257022 . 1 2447 0 -chrVII 269113 270750 Fusion_TU_164_tx_1 1 - 269113 270750 . 1 1638 0 -chrVII 288430 291742 Fusion_TU_144_tx_1 1 + 288430 291742 . 1 3313 0 -chrVII 330968 334655 Fusion_TU_165_tx_1 1 - 330968 334655 . 2 1137,2500 0,1188 -chrVII 330968 334655 Fusion_TU_165_tx_2 1 - 330968 334655 . 2 819,2767 0,921 -chrVII 330968 334655 Fusion_TU_165_tx_3 2 - 330968 334655 . 1 3688 0 -chrVII 392781 394727 Fusion_TU_145_tx_1 1 + 392781 394727 . 1 1947 0 -chrVII 392781 394927 Fusion_TU_145_tx_2 1 + 392781 394927 . 1 2147 0 -chrVII 398171 400395 Fusion_TU_146_tx_1 1 + 398171 400395 . 2 1990,153 0,2072 -chrVII 398171 400395 Fusion_TU_146_tx_2 2 + 398171 400395 . 1 2225 0 -chrVII 398280 400395 Fusion_TU_146_tx_3 1 + 398280 400395 . 1 2116 0 -chrVII 398484 400395 Fusion_TU_146_tx_4 9 + 398484 400395 . 1 1912 0 -chrVII 398568 400395 Fusion_TU_146_tx_5 548 + 398568 400395 . 1 1828 0 -chrVII 398568 400395 Fusion_TU_146_tx_6 1 + 398568 400395 . 2 839,925 0,903 -chrVII 398568 400395 Fusion_TU_146_tx_7 1 + 398568 400395 . 2 790,934 0,894 -chrVII 398568 400395 Fusion_TU_146_tx_8 1 + 398568 400395 . 2 842,905 0,923 -chrVII 398568 400395 Fusion_TU_146_tx_9 1 + 398568 400395 . 2 824,962 0,866 -chrVII 398568 400395 Fusion_TU_146_tx_10 1 + 398568 400395 . 2 118,1632 0,196 -chrVII 398568 400395 Fusion_TU_146_tx_11 1 + 398568 400395 . 2 997,766 0,1062 -chrVII 398568 400395 Fusion_TU_146_tx_12 1 + 398568 400395 . 2 172,1567 0,261 -chrVII 398568 400395 Fusion_TU_146_tx_13 1 + 398568 400395 . 2 729,946 0,882 -chrVII 398568 400395 Fusion_TU_146_tx_14 1 + 398568 400395 . 2 1576,203 0,1625 -chrVII 398568 400395 Fusion_TU_146_tx_15 1 + 398568 400395 . 2 901,818 0,1010 -chrVII 398568 400395 Fusion_TU_146_tx_16 1 + 398568 400395 . 2 87,1324 0,504 -chrVII 398568 400395 Fusion_TU_146_tx_17 1 + 398568 400395 . 2 1660,97 0,1731 -chrVII 398568 400395 Fusion_TU_146_tx_18 1 + 398568 400395 . 2 592,502 0,1326 -chrVII 398568 400549 Fusion_TU_146_tx_19 1 + 398568 400549 . 1 1982 0 -chrVII 398801 400395 Fusion_TU_146_tx_20 75 + 398801 400395 . 1 1595 0 -chrVII 398801 400395 Fusion_TU_146_tx_21 1 + 398801 400395 . 2 800,733 0,862 -chrVII 457074 459700 Fusion_TU_166_tx_1 1 - 457074 459700 . 2 1630,719 0,1908 -chrVII 457074 459700 Fusion_TU_166_tx_2 3 - 457074 459700 . 1 2627 0 -chrVII 461612 465067 Fusion_TU_147_tx_1 7 + 461612 465067 . 1 3456 0 -chrVII 461612 465067 Fusion_TU_147_tx_2 1 + 461612 465067 . 2 311,2851 0,605 -chrVII 461612 465192 Fusion_TU_147_tx_3 1 + 461612 465192 . 1 3581 0 -chrVII 461880 465067 Fusion_TU_147_tx_4 1 + 461880 465067 . 2 1862,773 0,2415 -chrVII 461880 465067 Fusion_TU_147_tx_5 1 + 461880 465067 . 1 3188 0 -chrVII 461952 465067 Fusion_TU_147_tx_6 1 + 461952 465067 . 1 3116 0 -chrVII 465731 468896 Fusion_TU_148_tx_1 11 + 465731 468896 . 1 3166 0 -chrVII 465909 468896 Fusion_TU_148_tx_2 5 + 465909 468896 . 1 2988 0 -chrVII 465909 468896 Fusion_TU_148_tx_3 1 + 465909 468896 . 3 402,1037,699 0,1079,2289 -chrVII 507948 511046 Fusion_TU_167_tx_1 1 - 507948 511046 . 1 3099 0 -chrVII 542177 544301 Fusion_TU_149_tx_1 1 + 542177 544301 . 2 1145,879 0,1246 -chrVII 558158 560049 Fusion_TU_168_tx_1 1 - 558158 560049 . 1 1892 0 -chrVII 637666 640115 Fusion_TU_169_tx_1 1 - 637666 640115 . 1 2450 0 -chrVII 637666 640405 Fusion_TU_169_tx_2 2 - 637666 640405 . 1 2740 0 -chrVII 662089 666167 Fusion_TU_150_tx_1 7 + 662089 666167 . 1 4079 0 -chrVII 662089 666167 Fusion_TU_150_tx_2 1 + 662089 666167 . 2 320,3384 0,695 -chrVII 662089 666167 Fusion_TU_150_tx_3 1 + 662089 666167 . 2 3923,69 0,4010 -chrVII 662783 666167 Fusion_TU_150_tx_4 2 + 662783 666167 . 1 3385 0 -chrVII 663187 666167 Fusion_TU_150_tx_5 2 + 663187 666167 . 1 2981 0 -chrVII 678651 682267 Fusion_TU_151_tx_1 3 + 678651 682267 . 1 3617 0 -chrVII 678651 682399 Fusion_TU_151_tx_2 1 + 678651 682399 . 3 1422,1575,577 0,1494,3172 -chrVII 678651 682399 Fusion_TU_151_tx_3 3 + 678651 682399 . 1 3749 0 -chrVII 690017 693176 Fusion_TU_152_tx_1 1 + 690017 693176 . 1 3160 0 -chrVII 690162 693176 Fusion_TU_152_tx_2 3 + 690162 693176 . 1 3015 0 -chrVII 690162 693176 Fusion_TU_152_tx_3 1 + 690162 693176 . 2 478,806 0,2209 -chrVII 690162 693176 Fusion_TU_152_tx_4 1 + 690162 693176 . 4 1066,1152,132,388 0,1133,2415,2627 -chrVII 690162 693176 Fusion_TU_152_tx_5 1 + 690162 693176 . 2 2482,479 0,2536 -chrVII 690457 693176 Fusion_TU_152_tx_6 2 + 690457 693176 . 1 2720 0 -chrVII 717294 720143 Fusion_TU_153_tx_1 1 + 717294 720143 . 1 2850 0 -chrVII 720357 724868 Fusion_TU_154_tx_1 15 + 720357 724868 . 1 4512 0 -chrVII 720725 724868 Fusion_TU_154_tx_2 3 + 720725 724868 . 1 4144 0 -chrVII 720794 724868 Fusion_TU_154_tx_3 1 + 720794 724868 . 1 4075 0 -chrVII 720930 724868 Fusion_TU_154_tx_4 1 + 720930 724868 . 1 3939 0 -chrVII 721181 724868 Fusion_TU_154_tx_5 1 + 721181 724868 . 2 1190,2351 0,1337 -chrVII 755329 757395 Fusion_TU_170_tx_1 1 - 755329 757395 . 2 996,838 0,1229 -chrVII 755473 757395 Fusion_TU_170_tx_2 1 - 755473 757395 . 1 1923 0 -chrVII 774787 777916 Fusion_TU_155_tx_1 15 + 774787 777916 . 1 3130 0 -chrVII 774787 777916 Fusion_TU_155_tx_2 1 + 774787 777916 . 2 2318,758 0,2372 -chrVII 774787 777916 Fusion_TU_155_tx_3 1 + 774787 777916 . 2 449,2197 0,933 -chrVII 785105 786984 Fusion_TU_171_tx_1 1 - 785105 786984 . 1 1880 0 -chrVII 805033 807701 Fusion_TU_172_tx_1 1 - 805033 807701 . 1 2669 0 -chrVII 905191 908880 Fusion_TU_156_tx_1 2 + 905191 908880 . 1 3690 0 -chrVII 905902 908880 Fusion_TU_156_tx_2 81 + 905902 908880 . 1 2979 0 -chrVII 905902 908880 Fusion_TU_156_tx_3 1 + 905902 908880 . 2 771,2072 0,907 -chrVII 905902 908880 Fusion_TU_156_tx_4 1 + 905902 908880 . 2 1149,1722 0,1257 -chrVII 905902 908880 Fusion_TU_156_tx_5 1 + 905902 908880 . 2 246,1614 0,1365 -chrVII 905902 908880 Fusion_TU_156_tx_6 1 + 905902 908880 . 2 2281,654 0,2325 -chrVII 906028 908880 Fusion_TU_156_tx_7 8 + 906028 908880 . 1 2853 0 -chrVII 906028 908880 Fusion_TU_156_tx_8 1 + 906028 908880 . 2 189,2240 0,613 -chrVII 906341 908880 Fusion_TU_156_tx_9 20 + 906341 908880 . 1 2540 0 -chrVII 906542 908880 Fusion_TU_156_tx_10 15 + 906542 908880 . 1 2339 0 -chrVII 906595 908880 Fusion_TU_156_tx_11 7 + 906595 908880 . 1 2286 0 -chrVII 940785 944866 Fusion_TU_173_tx_1 1 - 940785 944866 . 4 843,234,1515,397 0,1620,2045,3685 -chrVII 968028 969415 Fusion_TU_174_tx_1 1 - 968028 969415 . 1 1388 0 -chrVII 1057417 1062316 Fusion_TU_175_tx_1 1 - 1057417 1062316 . 2 1258,260 0,4640 -chrVIII 27778 32520 Fusion_TU_187_tx_1 1 - 27778 32520 . 2 2398,1672 0,3071 -chrVIII 27778 32775 Fusion_TU_187_tx_2 4 - 27778 32775 . 1 4998 0 -chrVIII 36318 39498 Fusion_TU_188_tx_1 2 - 36318 39498 . 1 3181 0 -chrVIII 56499 58746 Fusion_TU_189_tx_1 1 - 56499 58746 . 1 2248 0 -chrVIII 56499 58896 Fusion_TU_189_tx_2 1 - 56499 58896 . 1 2398 0 -chrVIII 56499 59010 Fusion_TU_189_tx_3 1 - 56499 59010 . 1 2512 0 -chrVIII 113397 115936 Fusion_TU_190_tx_1 1 - 113397 115936 . 1 2540 0 -chrVIII 122809 124081 Fusion_TU_176_tx_1 1 + 122809 124081 . 1 1273 0 -chrVIII 197178 201339 Fusion_TU_191_tx_1 1 - 197178 201339 . 1 4162 0 -chrVIII 220055 221354 Fusion_TU_177_tx_1 1 + 220055 221354 . 1 1300 0 -chrVIII 220735 222622 Fusion_TU_178_tx_1 1 + 220735 222622 . 1 1888 0 -chrVIII 245375 248450 Fusion_TU_179_tx_1 1 + 245375 248450 . 1 3076 0 -chrVIII 252230 255813 Fusion_TU_192_tx_1 1 - 252230 255813 . 3 2318,1032,63 0,2376,3521 -chrVIII 252264 255813 Fusion_TU_192_tx_2 2 - 252264 255813 . 2 3374,63 0,3487 -chrVIII 252267 255813 Fusion_TU_192_tx_3 1 - 252267 255813 . 3 2218,1025,63 0,2346,3484 -chrVIII 252280 255813 Fusion_TU_192_tx_4 1 - 252280 255813 . 2 3358,63 0,3471 -chrVIII 302665 305501 Fusion_TU_180_tx_1 1 + 302665 305501 . 2 480,1414 0,1423 -chrVIII 330284 333030 Fusion_TU_181_tx_1 1 + 330284 333030 . 1 2747 0 -chrVIII 352688 354478 Fusion_TU_182_tx_1 1 + 352688 354478 . 1 1791 0 -chrVIII 381703 382775 Fusion_TU_193_tx_1 4 - 381703 382775 . 1 1073 0 -chrVIII 381844 382775 Fusion_TU_193_tx_2 1 - 381844 382775 . 1 932 0 -chrVIII 381867 382775 Fusion_TU_193_tx_3 5 - 381867 382775 . 1 909 0 -chrVIII 381867 382775 Fusion_TU_193_tx_4 4 - 381867 382775 . 2 440,28 0,881 -chrVIII 381869 382775 Fusion_TU_193_tx_5 1 - 381869 382775 . 2 438,28 0,879 -chrVIII 381870 382630 Fusion_TU_193_tx_6 1 - 381870 382630 . 1 761 0 -chrVIII 381870 382775 Fusion_TU_193_tx_7 4 - 381870 382775 . 1 906 0 -chrVIII 381870 382775 Fusion_TU_193_tx_8 7 - 381870 382775 . 2 437,28 0,878 -chrVIII 381871 382630 Fusion_TU_193_tx_9 1 - 381871 382630 . 1 760 0 -chrVIII 381871 382775 Fusion_TU_193_tx_10 4 - 381871 382775 . 1 905 0 -chrVIII 381871 382775 Fusion_TU_193_tx_11 6 - 381871 382775 . 2 436,28 0,877 -chrVIII 381872 382775 Fusion_TU_193_tx_12 10 - 381872 382775 . 1 904 0 -chrVIII 381872 382775 Fusion_TU_193_tx_13 10 - 381872 382775 . 2 435,28 0,876 -chrVIII 381872 382775 Fusion_TU_193_tx_14 1 - 381872 382775 . 2 416,28 0,876 -chrVIII 381873 382775 Fusion_TU_193_tx_15 1 - 381873 382775 . 1 903 0 -chrVIII 381873 382775 Fusion_TU_193_tx_16 3 - 381873 382775 . 2 434,28 0,875 -chrVIII 381874 382630 Fusion_TU_193_tx_17 1 - 381874 382630 . 1 757 0 -chrVIII 381874 382775 Fusion_TU_193_tx_18 1 - 381874 382775 . 1 902 0 -chrVIII 381874 382775 Fusion_TU_193_tx_19 1 - 381874 382775 . 2 433,28 0,874 -chrVIII 381875 382775 Fusion_TU_193_tx_20 2 - 381875 382775 . 1 901 0 -chrVIII 381875 382775 Fusion_TU_193_tx_21 1 - 381875 382775 . 2 432,28 0,873 -chrVIII 381876 382775 Fusion_TU_193_tx_22 1 - 381876 382775 . 1 900 0 -chrVIII 381877 382775 Fusion_TU_193_tx_23 1 - 381877 382775 . 1 899 0 -chrVIII 381878 382775 Fusion_TU_193_tx_24 2 - 381878 382775 . 1 898 0 -chrVIII 381879 382775 Fusion_TU_193_tx_25 1 - 381879 382775 . 2 428,28 0,869 -chrVIII 381880 382630 Fusion_TU_193_tx_26 1 - 381880 382630 . 1 751 0 -chrVIII 381880 382775 Fusion_TU_193_tx_27 1 - 381880 382775 . 1 896 0 -chrVIII 381881 382775 Fusion_TU_193_tx_28 5 - 381881 382775 . 1 895 0 -chrVIII 381881 382775 Fusion_TU_193_tx_29 1 - 381881 382775 . 2 426,28 0,867 -chrVIII 381882 382775 Fusion_TU_193_tx_30 2 - 381882 382775 . 1 894 0 -chrVIII 381882 382775 Fusion_TU_193_tx_31 1 - 381882 382775 . 2 425,28 0,866 -chrVIII 381883 382775 Fusion_TU_193_tx_32 5 - 381883 382775 . 1 893 0 -chrVIII 381883 382775 Fusion_TU_193_tx_33 2 - 381883 382775 . 2 424,28 0,865 -chrVIII 381884 382775 Fusion_TU_193_tx_34 2 - 381884 382775 . 1 892 0 -chrVIII 381884 382775 Fusion_TU_193_tx_35 6 - 381884 382775 . 2 423,28 0,864 -chrVIII 381885 382630 Fusion_TU_193_tx_36 1 - 381885 382630 . 1 746 0 -chrVIII 381886 382775 Fusion_TU_193_tx_37 2 - 381886 382775 . 1 890 0 -chrVIII 381886 382775 Fusion_TU_193_tx_38 3 - 381886 382775 . 2 421,28 0,862 -chrVIII 381887 382775 Fusion_TU_193_tx_39 1 - 381887 382775 . 1 889 0 -chrVIII 381889 382775 Fusion_TU_193_tx_40 1 - 381889 382775 . 2 418,28 0,859 -chrVIII 381890 382775 Fusion_TU_193_tx_41 1 - 381890 382775 . 1 886 0 -chrVIII 381892 382775 Fusion_TU_193_tx_42 3 - 381892 382775 . 1 884 0 -chrVIII 381892 382775 Fusion_TU_193_tx_43 1 - 381892 382775 . 2 415,28 0,856 -chrVIII 381893 382630 Fusion_TU_193_tx_44 1 - 381893 382630 . 1 738 0 -chrVIII 381893 382775 Fusion_TU_193_tx_45 4 - 381893 382775 . 2 414,28 0,855 -chrVIII 381894 382630 Fusion_TU_193_tx_46 2 - 381894 382630 . 1 737 0 -chrVIII 381894 382775 Fusion_TU_193_tx_47 3 - 381894 382775 . 1 882 0 -chrVIII 381894 382775 Fusion_TU_193_tx_48 3 - 381894 382775 . 2 413,28 0,854 -chrVIII 381895 382630 Fusion_TU_193_tx_49 1 - 381895 382630 . 1 736 0 -chrVIII 381897 382775 Fusion_TU_193_tx_50 1 - 381897 382775 . 1 879 0 -chrVIII 381899 382775 Fusion_TU_193_tx_51 1 - 381899 382775 . 2 408,28 0,849 -chrVIII 381900 382630 Fusion_TU_193_tx_52 1 - 381900 382630 . 1 731 0 -chrVIII 381900 382775 Fusion_TU_193_tx_53 2 - 381900 382775 . 1 876 0 -chrVIII 381901 382775 Fusion_TU_193_tx_54 1 - 381901 382775 . 2 406,28 0,847 -chrVIII 381905 382775 Fusion_TU_193_tx_55 4 - 381905 382775 . 1 871 0 -chrVIII 381905 382775 Fusion_TU_193_tx_56 3 - 381905 382775 . 2 402,28 0,843 -chrVIII 381906 382775 Fusion_TU_193_tx_57 1 - 381906 382775 . 1 870 0 -chrVIII 381907 382775 Fusion_TU_193_tx_58 1 - 381907 382775 . 2 400,28 0,841 -chrVIII 381908 382775 Fusion_TU_193_tx_59 1 - 381908 382775 . 1 868 0 -chrVIII 381908 382775 Fusion_TU_193_tx_60 1 - 381908 382775 . 2 399,28 0,840 -chrVIII 381909 382630 Fusion_TU_193_tx_61 1 - 381909 382630 . 1 722 0 -chrVIII 381911 382775 Fusion_TU_193_tx_62 1 - 381911 382775 . 1 865 0 -chrVIII 381912 382775 Fusion_TU_193_tx_63 2 - 381912 382775 . 1 864 0 -chrVIII 381912 382775 Fusion_TU_193_tx_64 1 - 381912 382775 . 2 395,28 0,836 -chrVIII 381914 382775 Fusion_TU_193_tx_65 1 - 381914 382775 . 1 862 0 -chrVIII 381914 382775 Fusion_TU_193_tx_66 2 - 381914 382775 . 2 393,28 0,834 -chrVIII 381914 382795 Fusion_TU_193_tx_67 1 - 381914 382795 . 2 393,38 0,844 -chrVIII 381915 382775 Fusion_TU_193_tx_68 1 - 381915 382775 . 1 861 0 -chrVIII 381915 382775 Fusion_TU_193_tx_69 5 - 381915 382775 . 2 392,28 0,833 -chrVIII 381916 382630 Fusion_TU_193_tx_70 1 - 381916 382630 . 1 715 0 -chrVIII 381916 382775 Fusion_TU_193_tx_71 3 - 381916 382775 . 1 860 0 -chrVIII 381917 382775 Fusion_TU_193_tx_72 3 - 381917 382775 . 1 859 0 -chrVIII 381917 382775 Fusion_TU_193_tx_73 1 - 381917 382775 . 2 390,28 0,831 -chrVIII 381918 382775 Fusion_TU_193_tx_74 4 - 381918 382775 . 1 858 0 -chrVIII 381918 382775 Fusion_TU_193_tx_75 2 - 381918 382775 . 2 389,28 0,830 -chrVIII 381920 382630 Fusion_TU_193_tx_76 1 - 381920 382630 . 1 711 0 -chrVIII 381920 382775 Fusion_TU_193_tx_77 4 - 381920 382775 . 1 856 0 -chrVIII 381920 382775 Fusion_TU_193_tx_78 2 - 381920 382775 . 2 387,28 0,828 -chrVIII 381921 382775 Fusion_TU_193_tx_79 2 - 381921 382775 . 1 855 0 -chrVIII 381921 382775 Fusion_TU_193_tx_80 4 - 381921 382775 . 2 386,28 0,827 -chrVIII 381922 382775 Fusion_TU_193_tx_81 5 - 381922 382775 . 1 854 0 -chrVIII 381922 382775 Fusion_TU_193_tx_82 2 - 381922 382775 . 2 385,28 0,826 -chrVIII 381924 382775 Fusion_TU_193_tx_83 1 - 381924 382775 . 1 852 0 -chrVIII 381925 382775 Fusion_TU_193_tx_84 1 - 381925 382775 . 2 382,28 0,823 -chrVIII 381926 382775 Fusion_TU_193_tx_85 1 - 381926 382775 . 2 381,28 0,822 -chrVIII 381929 382775 Fusion_TU_193_tx_86 1 - 381929 382775 . 2 378,28 0,819 -chrVIII 381930 382775 Fusion_TU_193_tx_87 2 - 381930 382775 . 1 846 0 -chrVIII 381930 382775 Fusion_TU_193_tx_88 2 - 381930 382775 . 2 377,28 0,818 -chrVIII 381931 382775 Fusion_TU_193_tx_89 1 - 381931 382775 . 2 376,32 0,813 -chrVIII 381934 382775 Fusion_TU_193_tx_90 1 - 381934 382775 . 1 842 0 -chrVIII 381934 382775 Fusion_TU_193_tx_91 1 - 381934 382775 . 2 373,28 0,814 -chrVIII 383489 386979 Fusion_TU_194_tx_1 1 - 383489 386979 . 1 3491 0 -chrVIII 402921 406264 Fusion_TU_183_tx_1 3 + 402921 406264 . 1 3344 0 -chrVIII 420221 422421 Fusion_TU_195_tx_1 3 - 420221 422421 . 1 2201 0 -chrVIII 420281 422160 Fusion_TU_195_tx_2 1 - 420281 422160 . 1 1880 0 -chrVIII 420281 422421 Fusion_TU_195_tx_3 20 - 420281 422421 . 1 2141 0 -chrVIII 420281 422421 Fusion_TU_195_tx_4 1 - 420281 422421 . 3 1109,250,493 0,1290,1648 -chrVIII 422894 424561 Fusion_TU_184_tx_1 9 + 422894 424561 . 1 1668 0 -chrVIII 423169 424561 Fusion_TU_184_tx_2 1 + 423169 424561 . 1 1393 0 -chrVIII 429601 436813 Fusion_TU_196_tx_1 1 - 429601 436813 . 3 2341,3716,943 0,2476,6270 -chrVIII 461683 463817 Fusion_TU_185_tx_1 1 + 461683 463817 . 1 2135 0 -chrVIII 517510 519406 Fusion_TU_186_tx_1 1 + 517510 519406 . 1 1897 0 -chrX 37912 40064 Fusion_TU_212_tx_1 10 + 37912 40064 . 1 2153 0 -chrX 37912 40064 Fusion_TU_212_tx_2 1 + 37912 40064 . 2 750,1289 0,864 -chrX 41214 44122 Fusion_TU_220_tx_1 1 - 41214 44122 . 1 2909 0 -chrX 41216 44122 Fusion_TU_220_tx_2 1 - 41216 44122 . 1 2907 0 -chrX 181391 182475 Fusion_TU_453_tx_1 3 - 181391 182475 . 1 1085 0 -chrX 181391 184286 Fusion_TU_453_tx_2 3 - 181391 184286 . 1 2896 0 -chrX 181391 184286 Fusion_TU_453_tx_3 1 - 181391 184286 . 2 1904,929 0,1967 -chrX 181391 184286 Fusion_TU_453_tx_4 1 - 181391 184286 . 2 1345,1035 0,1861 -chrX 181799 184286 Fusion_TU_453_tx_5 1 - 181799 184286 . 1 2488 0 -chrX 239325 241999 Fusion_TU_213_tx_1 2 + 239325 241999 . 1 2675 0 -chrX 239325 242101 Fusion_TU_213_tx_2 2 + 239325 242101 . 1 2777 0 -chrX 239325 242101 Fusion_TU_213_tx_3 1 + 239325 242101 . 2 1534,1175 0,1602 -chrX 245546 247046 Fusion_TU_214_tx_1 1 + 245546 247046 . 1 1501 0 -chrX 251679 254377 Fusion_TU_221_tx_1 1 - 251679 254377 . 1 2699 0 -chrX 251679 254488 Fusion_TU_221_tx_2 2 - 251679 254488 . 1 2810 0 -chrX 313917 315591 Fusion_TU_222_tx_1 1 - 313917 315591 . 1 1675 0 -chrX 368374 373905 Fusion_TU_223_tx_1 2 - 368374 373905 . 1 5532 0 -chrX 368551 373905 Fusion_TU_223_tx_2 4 - 368551 373905 . 1 5355 0 -chrX 369356 373905 Fusion_TU_223_tx_3 1 - 369356 373905 . 1 4550 0 -chrX 442673 454729 Fusion_TU_454_tx_1 1 - 442673 454729 . 2 1134,1042 0,11015 -chrX 442768 445688 Fusion_TU_454_tx_2 2 - 442768 445688 . 1 2921 0 -chrX 460341 462526 Fusion_TU_215_tx_1 2 + 460341 462526 . 1 2186 0 -chrX 460527 462526 Fusion_TU_215_tx_2 1 + 460527 462526 . 1 2000 0 -chrX 464287 467054 Fusion_TU_224_tx_1 1 - 464287 467054 . 1 2768 0 -chrX 467131 469606 Fusion_TU_225_tx_1 1 - 467131 469606 . 2 1397,1034 0,1442 -chrX 467131 469606 Fusion_TU_225_tx_2 1 - 467131 469606 . 1 2476 0 -chrX 528685 531440 Fusion_TU_216_tx_1 1 + 528685 531440 . 2 696,1766 0,990 -chrX 570894 572966 Fusion_TU_226_tx_1 1 - 570894 572966 . 1 2073 0 -chrX 580287 582396 Fusion_TU_227_tx_1 1 - 580287 582396 . 1 2110 0 -chrX 610462 612085 Fusion_TU_228_tx_1 1 - 610462 612085 . 1 1624 0 -chrX 637025 638278 Fusion_TU_217_tx_1 1 + 637025 638278 . 1 1254 0 -chrX 643386 646524 Fusion_TU_229_tx_1 1 - 643386 646524 . 2 2265,710 0,2429 -chrX 705686 708570 Fusion_TU_218_tx_1 2 + 705686 708570 . 1 2885 0 -chrX 705686 708773 Fusion_TU_218_tx_2 3 + 705686 708773 . 1 3088 0 -chrX 705891 708570 Fusion_TU_218_tx_3 1 + 705891 708570 . 1 2680 0 -chrX 705978 708773 Fusion_TU_218_tx_4 1 + 705978 708773 . 1 2796 0 -chrX 718222 721389 Fusion_TU_219_tx_1 1 + 718222 721389 . 2 2144,959 0,2209 -chrXI 18657 21221 Fusion_TU_230_tx_1 1 + 18657 21221 . 1 2565 0 -chrXI 19009 21221 Fusion_TU_230_tx_2 1 + 19009 21221 . 1 2213 0 -chrXI 47147 49009 Fusion_TU_231_tx_1 4 + 47147 49009 . 1 1863 0 -chrXI 48162 50865 Fusion_TU_232_tx_1 1 + 48162 50865 . 1 2704 0 -chrXI 50019 53477 Fusion_TU_233_tx_1 12 + 50019 53477 . 1 3459 0 -chrXI 77990 79317 Fusion_TU_250_tx_1 1 - 77990 79317 . 1 1328 0 -chrXI 94145 98443 Fusion_TU_234_tx_1 1 + 94145 98443 . 1 4299 0 -chrXI 100346 101765 Fusion_TU_455_tx_1 1 + 100346 101765 . 1 1420 0 -chrXI 100346 106913 Fusion_TU_455_tx_2 24 + 100346 106913 . 1 6568 0 -chrXI 100346 106913 Fusion_TU_455_tx_3 1 + 100346 106913 . 2 5114,1417 0,5151 -chrXI 100346 106913 Fusion_TU_455_tx_4 1 + 100346 106913 . 2 3257,2845 0,3723 -chrXI 100513 106913 Fusion_TU_455_tx_5 1 + 100513 106913 . 1 6401 0 -chrXI 100651 106913 Fusion_TU_455_tx_6 2 + 100651 106913 . 1 6263 0 -chrXI 100651 106913 Fusion_TU_455_tx_7 1 + 100651 106913 . 2 4974,1229 0,5034 -chrXI 100855 106913 Fusion_TU_455_tx_8 2 + 100855 106913 . 1 6059 0 -chrXI 101155 106913 Fusion_TU_455_tx_9 1 + 101155 106913 . 1 5759 0 -chrXI 101305 106913 Fusion_TU_455_tx_10 5 + 101305 106913 . 1 5609 0 -chrXI 101305 106913 Fusion_TU_455_tx_11 1 + 101305 106913 . 3 269,1146,2673 0,342,2936 -chrXI 101538 106913 Fusion_TU_455_tx_12 6 + 101538 106913 . 1 5376 0 -chrXI 101538 106913 Fusion_TU_455_tx_13 1 + 101538 106913 . 2 2359,2731 0,2645 -chrXI 101538 106913 Fusion_TU_455_tx_14 1 + 101538 106913 . 2 4200,1100 0,4276 -chrXI 101668 106913 Fusion_TU_455_tx_15 1 + 101668 106913 . 2 2959,2196 0,3050 -chrXI 101668 106913 Fusion_TU_455_tx_16 2 + 101668 106913 . 1 5246 0 -chrXI 101790 106913 Fusion_TU_455_tx_17 3 + 101790 106913 . 1 5124 0 -chrXI 101856 106913 Fusion_TU_455_tx_18 5 + 101856 106913 . 1 5058 0 -chrXI 102202 106913 Fusion_TU_455_tx_19 3 + 102202 106913 . 1 4712 0 -chrXI 102261 106913 Fusion_TU_455_tx_20 3 + 102261 106913 . 1 4653 0 -chrXI 102537 106913 Fusion_TU_455_tx_21 3 + 102537 106913 . 1 4377 0 -chrXI 102654 106913 Fusion_TU_455_tx_22 5 + 102654 106913 . 1 4260 0 -chrXI 103083 106913 Fusion_TU_455_tx_23 1 + 103083 106913 . 2 1753,1653 0,2178 -chrXI 103083 106913 Fusion_TU_455_tx_24 11 + 103083 106913 . 1 3831 0 -chrXI 103083 106913 Fusion_TU_455_tx_25 1 + 103083 106913 . 2 2512,1223 0,2608 -chrXI 103194 106913 Fusion_TU_455_tx_26 6 + 103194 106913 . 1 3720 0 -chrXI 103194 106913 Fusion_TU_455_tx_27 1 + 103194 106913 . 2 132,2648 0,1072 -chrXI 103515 106913 Fusion_TU_455_tx_28 12 + 103515 106913 . 1 3399 0 -chrXI 103515 106913 Fusion_TU_455_tx_29 1 + 103515 106913 . 2 1216,2127 0,1272 -chrXI 103515 106913 Fusion_TU_455_tx_30 1 + 103515 106913 . 2 1365,1941 0,1458 -chrXI 103515 106913 Fusion_TU_455_tx_31 1 + 103515 106913 . 2 1332,1984 0,1415 -chrXI 103984 106913 Fusion_TU_455_tx_32 1 + 103984 106913 . 2 1408,1356 0,1574 -chrXI 103984 106913 Fusion_TU_455_tx_33 1 + 103984 106913 . 1 2930 0 -chrXI 104099 106913 Fusion_TU_455_tx_34 21 + 104099 106913 . 1 2815 0 -chrXI 104212 106913 Fusion_TU_455_tx_35 13 + 104212 106913 . 1 2702 0 -chrXI 104212 106913 Fusion_TU_455_tx_36 1 + 104212 106913 . 2 1413,1223 0,1479 -chrXI 104212 106913 Fusion_TU_455_tx_37 1 + 104212 106913 . 2 1515,1009 0,1693 -chrXI 104361 106913 Fusion_TU_455_tx_38 18 + 104361 106913 . 1 2553 0 -chrXI 104361 106913 Fusion_TU_455_tx_39 1 + 104361 106913 . 2 1411,1083 0,1470 -chrXI 104361 106913 Fusion_TU_455_tx_40 1 + 104361 106913 . 2 1381,1083 0,1470 -chrXI 137237 138685 Fusion_TU_251_tx_1 2 - 137237 138685 . 1 1449 0 -chrXI 163010 164409 Fusion_TU_252_tx_1 1 - 163010 164409 . 2 41,895 0,505 -chrXI 184565 185936 Fusion_TU_253_tx_1 1 - 184565 185936 . 1 1372 0 -chrXI 208163 210304 Fusion_TU_235_tx_1 16 + 208163 210304 . 1 2142 0 -chrXI 208163 210304 Fusion_TU_235_tx_2 1 + 208163 210304 . 2 45,2009 0,133 -chrXI 208163 210304 Fusion_TU_235_tx_3 1 + 208163 210304 . 2 1110,955 0,1187 -chrXI 208163 210304 Fusion_TU_235_tx_4 1 + 208163 210304 . 2 1110,922 0,1220 -chrXI 208163 210304 Fusion_TU_235_tx_5 1 + 208163 210304 . 2 1098,983 0,1159 -chrXI 231955 235859 Fusion_TU_236_tx_1 1 + 231955 235859 . 1 3905 0 -chrXI 246172 248884 Fusion_TU_237_tx_1 1 + 246172 248884 . 1 2713 0 -chrXI 248658 253526 Fusion_TU_238_tx_1 1 + 248658 253526 . 1 4869 0 -chrXI 253542 256516 Fusion_TU_254_tx_1 1 - 253542 256516 . 2 1950,965 0,2010 -chrXI 288822 292948 Fusion_TU_239_tx_1 1 + 288822 292948 . 1 4127 0 -chrXI 296395 299166 Fusion_TU_240_tx_1 20 + 296395 299166 . 1 2772 0 -chrXI 296940 299166 Fusion_TU_240_tx_2 4 + 296940 299166 . 1 2227 0 -chrXI 297233 299166 Fusion_TU_240_tx_3 3 + 297233 299166 . 1 1934 0 -chrXI 307276 309777 Fusion_TU_241_tx_1 1 + 307276 309777 . 1 2502 0 -chrXI 317596 320673 Fusion_TU_242_tx_1 1 + 317596 320673 . 1 3078 0 -chrXI 317596 320830 Fusion_TU_242_tx_2 8 + 317596 320830 . 1 3235 0 -chrXI 317596 320830 Fusion_TU_242_tx_3 1 + 317596 320830 . 2 927,1556 0,1679 -chrXI 317750 320830 Fusion_TU_242_tx_4 1 + 317750 320830 . 2 1543,1404 0,1677 -chrXI 317909 320830 Fusion_TU_242_tx_5 2 + 317909 320830 . 1 2922 0 -chrXI 318096 320985 Fusion_TU_242_tx_6 1 + 318096 320985 . 1 2890 0 -chrXI 318173 320830 Fusion_TU_242_tx_7 1 + 318173 320830 . 1 2658 0 -chrXI 323627 326360 Fusion_TU_243_tx_1 1 + 323627 326360 . 1 2734 0 -chrXI 338656 339516 Fusion_TU_255_tx_1 1 - 338656 339516 . 1 861 0 -chrXI 371727 375286 Fusion_TU_244_tx_1 2 + 371727 375286 . 1 3560 0 -chrXI 402542 405243 Fusion_TU_245_tx_1 1 + 402542 405243 . 1 2702 0 -chrXI 420062 421744 Fusion_TU_256_tx_1 1 - 420062 421744 . 1 1683 0 -chrXI 446196 448045 Fusion_TU_257_tx_1 1 - 446196 448045 . 2 956,235 0,1615 -chrXI 446690 447700 Fusion_TU_246_tx_1 1 + 446690 447700 . 1 1011 0 -chrXI 461497 463503 Fusion_TU_258_tx_1 1 - 461497 463503 . 1 2007 0 -chrXI 599832 603169 Fusion_TU_247_tx_1 1 + 599832 603169 . 1 3338 0 -chrXI 599832 603293 Fusion_TU_247_tx_2 2 + 599832 603293 . 1 3462 0 -chrXI 603094 605432 Fusion_TU_259_tx_1 1 - 603094 605432 . 1 2339 0 -chrXI 619648 625622 Fusion_TU_248_tx_1 3 + 619648 625622 . 1 5975 0 -chrXI 625242 626329 Fusion_TU_249_tx_1 1 + 625242 626329 . 1 1088 0 -chrXII 40860 43771 Fusion_TU_271_tx_1 1 - 40860 43771 . 1 2912 0 -chrXII 41155 43490 Fusion_TU_271_tx_2 1 - 41155 43490 . 1 2336 0 -chrXII 41155 43490 Fusion_TU_271_tx_3 1 - 41155 43490 . 2 871,1040 0,1296 -chrXII 41155 46434 Fusion_TU_457_tx_1 2 - 41155 46434 . 1 5280 0 -chrXII 43067 46434 Fusion_TU_457_tx_2 1 - 43067 46434 . 1 3368 0 -chrXII 52757 54651 Fusion_TU_272_tx_1 1 - 52757 54651 . 1 1895 0 -chrXII 97931 100194 Fusion_TU_273_tx_1 1 - 97931 100194 . 1 2264 0 -chrXII 105538 108006 Fusion_TU_274_tx_1 1 - 105538 108006 . 1 2469 0 -chrXII 105538 108006 Fusion_TU_274_tx_2 1 - 105538 108006 . 2 1334,850 0,1619 -chrXII 105538 108149 Fusion_TU_274_tx_3 7 - 105538 108149 . 1 2612 0 -chrXII 105538 108149 Fusion_TU_274_tx_4 1 - 105538 108149 . 2 1834,729 0,1883 -chrXII 105538 108172 Fusion_TU_274_tx_5 1 - 105538 108172 . 2 970,984 0,1651 -chrXII 105538 108354 Fusion_TU_274_tx_6 1 - 105538 108354 . 1 2817 0 -chrXII 105538 109027 Fusion_TU_274_tx_7 1 - 105538 109027 . 1 3490 0 -chrXII 164384 167264 Fusion_TU_260_tx_1 1 + 164384 167264 . 1 2881 0 -chrXII 181597 184951 Fusion_TU_275_tx_1 1 - 181597 184951 . 1 3355 0 -chrXII 228774 230484 Fusion_TU_276_tx_1 1 - 228774 230484 . 1 1711 0 -chrXII 231595 233298 Fusion_TU_277_tx_1 1 - 231595 233298 . 1 1704 0 -chrXII 267719 270801 Fusion_TU_278_tx_1 3 - 267719 270801 . 1 3083 0 -chrXII 280718 281489 Fusion_TU_261_tx_1 1 + 280718 281489 . 1 772 0 -chrXII 280938 282212 Fusion_TU_279_tx_1 1 - 280938 282212 . 1 1275 0 -chrXII 341298 342978 Fusion_TU_262_tx_1 1 + 341298 342978 . 1 1681 0 -chrXII 341375 342978 Fusion_TU_262_tx_2 1 + 341375 342978 . 1 1604 0 -chrXII 341460 342978 Fusion_TU_262_tx_3 1 + 341460 342978 . 1 1519 0 -chrXII 341609 342978 Fusion_TU_262_tx_4 3 + 341609 342978 . 1 1370 0 -chrXII 341785 342978 Fusion_TU_262_tx_5 198 + 341785 342978 . 1 1194 0 -chrXII 341785 342978 Fusion_TU_262_tx_6 1 + 341785 342978 . 2 1065,80 0,1114 -chrXII 341785 342978 Fusion_TU_262_tx_7 1 + 341785 342978 . 2 490,488 0,706 -chrXII 341785 342978 Fusion_TU_262_tx_8 1 + 341785 342978 . 2 1076,80 0,1114 -chrXII 341785 342978 Fusion_TU_262_tx_9 1 + 341785 342978 . 2 859,229 0,965 -chrXII 341785 342978 Fusion_TU_262_tx_10 1 + 341785 342978 . 2 366,368 0,826 -chrXII 341785 343062 Fusion_TU_262_tx_11 5 + 341785 343062 . 1 1278 0 -chrXII 341866 342978 Fusion_TU_262_tx_12 8 + 341866 342978 . 1 1113 0 -chrXII 434610 437536 Fusion_TU_263_tx_1 7 + 434610 437536 . 1 2927 0 -chrXII 451789 464316 Fusion_TU_280_tx_1 1 - 451789 464316 . 2 481,2684 0,9844 -chrXII 451807 462467 Fusion_TU_280_tx_2 1 - 451807 462467 . 3 520,40,859 0,7989,9802 -chrXII 499449 500660 Fusion_TU_281_tx_1 1 - 499449 500660 . 1 1212 0 -chrXII 499449 500833 Fusion_TU_281_tx_2 1 - 499449 500833 . 1 1385 0 -chrXII 499449 501091 Fusion_TU_281_tx_3 22 - 499449 501091 . 1 1643 0 -chrXII 499449 501091 Fusion_TU_281_tx_4 1 - 499449 501091 . 2 698,593 0,1050 -chrXII 500360 502170 Fusion_TU_282_tx_1 1 - 500360 502170 . 1 1811 0 -chrXII 512842 514779 Fusion_TU_283_tx_1 1 - 512842 514779 . 1 1938 0 -chrXII 513107 514105 Fusion_TU_283_tx_2 1 - 513107 514105 . 1 999 0 -chrXII 513107 514279 Fusion_TU_283_tx_3 1 - 513107 514279 . 1 1173 0 -chrXII 513107 514363 Fusion_TU_283_tx_4 14 - 513107 514363 . 1 1257 0 -chrXII 513107 514503 Fusion_TU_283_tx_5 1 - 513107 514503 . 1 1397 0 -chrXII 513107 514779 Fusion_TU_283_tx_6 11 - 513107 514779 . 1 1673 0 -chrXII 513107 514779 Fusion_TU_283_tx_7 1 - 513107 514779 . 2 839,774 0,899 -chrXII 628602 633363 Fusion_TU_284_tx_1 1 - 628602 633363 . 1 4762 0 -chrXII 640272 642320 Fusion_TU_264_tx_1 1 + 640272 642320 . 1 2049 0 -chrXII 640272 642439 Fusion_TU_264_tx_2 1 + 640272 642439 . 1 2168 0 -chrXII 646634 651162 Fusion_TU_265_tx_1 1 + 646634 651162 . 1 4529 0 -chrXII 658486 659889 Fusion_TU_266_tx_1 16 + 658486 659889 . 1 1404 0 -chrXII 658671 659889 Fusion_TU_266_tx_2 260 + 658671 659889 . 1 1219 0 -chrXII 658671 659889 Fusion_TU_266_tx_3 1 + 658671 659889 . 2 43,527 0,692 -chrXII 658671 659889 Fusion_TU_266_tx_4 1 + 658671 659889 . 2 208,733 0,486 -chrXII 658671 659889 Fusion_TU_266_tx_5 1 + 658671 659889 . 2 523,646 0,573 -chrXII 658671 659889 Fusion_TU_266_tx_6 1 + 658671 659889 . 2 258,602 0,617 -chrXII 658671 659889 Fusion_TU_266_tx_7 1 + 658671 659889 . 2 43,822 0,397 -chrXII 669202 670188 Fusion_TU_456_tx_1 1 + 669202 670188 . 1 987 0 -chrXII 669202 672902 Fusion_TU_456_tx_2 1 + 669202 672902 . 1 3701 0 -chrXII 669850 672902 Fusion_TU_456_tx_3 3 + 669850 672902 . 1 3053 0 -chrXII 691534 695071 Fusion_TU_267_tx_1 1 + 691534 695071 . 1 3538 0 -chrXII 708146 710368 Fusion_TU_285_tx_1 2 - 708146 710368 . 1 2223 0 -chrXII 708263 710281 Fusion_TU_285_tx_2 1 - 708263 710281 . 2 1166,633 0,1386 -chrXII 708263 710368 Fusion_TU_285_tx_3 206 - 708263 710368 . 1 2106 0 -chrXII 708263 710368 Fusion_TU_285_tx_4 1 - 708263 710368 . 2 1737,256 0,1850 -chrXII 708263 710368 Fusion_TU_285_tx_5 1 - 708263 710368 . 2 468,1580 0,526 -chrXII 708263 710368 Fusion_TU_285_tx_6 1 - 708263 710368 . 2 492,590 0,1516 -chrXII 708263 710368 Fusion_TU_285_tx_7 1 - 708263 710368 . 2 1532,201 0,1905 -chrXII 708263 710368 Fusion_TU_285_tx_8 1 - 708263 710368 . 2 1111,882 0,1224 -chrXII 708263 710368 Fusion_TU_285_tx_9 1 - 708263 710368 . 2 630,1238 0,868 -chrXII 708263 710368 Fusion_TU_285_tx_10 1 - 708263 710368 . 2 1543,274 0,1832 -chrXII 708263 710368 Fusion_TU_285_tx_11 1 - 708263 710368 . 2 1867,129 0,1977 -chrXII 708263 710368 Fusion_TU_285_tx_12 1 - 708263 710368 . 2 1394,365 0,1741 -chrXII 708263 710368 Fusion_TU_285_tx_13 1 - 708263 710368 . 2 1624,256 0,1850 -chrXII 708263 710368 Fusion_TU_285_tx_14 1 - 708263 710368 . 2 1737,320 0,1786 -chrXII 708263 710368 Fusion_TU_285_tx_15 1 - 708263 710368 . 2 1504,140 0,1966 -chrXII 708263 710368 Fusion_TU_285_tx_16 1 - 708263 710368 . 2 780,1023 0,1083 -chrXII 708263 710531 Fusion_TU_285_tx_17 3 - 708263 710531 . 1 2269 0 -chrXII 708402 710368 Fusion_TU_285_tx_18 23 - 708402 710368 . 1 1967 0 -chrXII 708402 710368 Fusion_TU_285_tx_19 1 - 708402 710368 . 2 856,1001 0,966 -chrXII 708402 710368 Fusion_TU_285_tx_20 1 - 708402 710368 . 2 1598,274 0,1693 -chrXII 708402 710368 Fusion_TU_285_tx_21 1 - 708402 710368 . 2 547,374 0,1593 -chrXII 710769 713178 Fusion_TU_458_tx_1 1 - 710769 713178 . 1 2410 0 -chrXII 710775 712737 Fusion_TU_458_tx_2 1 - 710775 712737 . 1 1963 0 -chrXII 710834 712737 Fusion_TU_458_tx_3 1 - 710834 712737 . 1 1904 0 -chrXII 712348 713178 Fusion_TU_458_tx_4 104 - 712348 713178 . 1 831 0 -chrXII 712348 713178 Fusion_TU_458_tx_5 229 - 712348 713178 . 2 378,23 0,808 -chrXII 712348 713178 Fusion_TU_458_tx_6 1 - 712348 713178 . 2 356,23 0,808 -chrXII 712348 713178 Fusion_TU_458_tx_7 2 - 712348 713178 . 2 371,23 0,808 -chrXII 712348 713178 Fusion_TU_458_tx_8 1 - 712348 713178 . 2 326,34 0,797 -chrXII 712348 713178 Fusion_TU_458_tx_9 1 - 712348 713178 . 2 371,27 0,804 -chrXII 718131 719874 Fusion_TU_286_tx_1 1 - 718131 719874 . 2 780,881 0,863 -chrXII 718131 720082 Fusion_TU_286_tx_2 1 - 718131 720082 . 1 1952 0 -chrXII 719603 721367 Fusion_TU_287_tx_1 1 - 719603 721367 . 1 1765 0 -chrXII 719603 721454 Fusion_TU_287_tx_2 2 - 719603 721454 . 1 1852 0 -chrXII 735033 736963 Fusion_TU_288_tx_1 11 - 735033 736963 . 1 1931 0 -chrXII 735033 737307 Fusion_TU_288_tx_2 15 - 735033 737307 . 1 2275 0 -chrXII 735033 737572 Fusion_TU_288_tx_3 1 - 735033 737572 . 2 1089,1410 0,1130 -chrXII 735033 737574 Fusion_TU_288_tx_4 1 - 735033 737574 . 2 1072,1416 0,1126 -chrXII 735033 737588 Fusion_TU_288_tx_5 172 - 735033 737588 . 1 2556 0 -chrXII 735033 737588 Fusion_TU_288_tx_6 3 - 735033 737588 . 2 1089,1418 0,1138 -chrXII 735033 737588 Fusion_TU_288_tx_7 1 - 735033 737588 . 2 1481,1003 0,1553 -chrXII 735033 737588 Fusion_TU_288_tx_8 1 - 735033 737588 . 2 1072,1412 0,1144 -chrXII 735033 737588 Fusion_TU_288_tx_9 1 - 735033 737588 . 2 1650,852 0,1704 -chrXII 735033 737588 Fusion_TU_288_tx_10 1 - 735033 737588 . 2 506,1985 0,571 -chrXII 735033 737588 Fusion_TU_288_tx_11 1 - 735033 737588 . 2 659,1788 0,768 -chrXII 735033 737588 Fusion_TU_288_tx_12 1 - 735033 737588 . 2 55,2424 0,132 -chrXII 735033 737588 Fusion_TU_288_tx_13 1 - 735033 737588 . 2 694,1795 0,761 -chrXII 735033 737588 Fusion_TU_288_tx_14 1 - 735033 737588 . 2 46,2441 0,115 -chrXII 735033 737588 Fusion_TU_288_tx_15 1 - 735033 737588 . 4 1324,259,486,278 0,1388,1696,2278 -chrXII 760304 764208 Fusion_TU_289_tx_1 1 - 760304 764208 . 1 3905 0 -chrXII 852058 854330 Fusion_TU_290_tx_1 1 - 852058 854330 . 1 2273 0 -chrXII 924953 928081 Fusion_TU_268_tx_1 1 + 924953 928081 . 2 1767,903 0,2226 -chrXII 924953 928081 Fusion_TU_268_tx_2 15 + 924953 928081 . 1 3129 0 -chrXII 924953 928081 Fusion_TU_268_tx_3 1 + 924953 928081 . 2 401,2228 0,901 -chrXII 925143 928081 Fusion_TU_268_tx_4 1 + 925143 928081 . 1 2939 0 -chrXII 925276 928081 Fusion_TU_268_tx_5 1 + 925276 928081 . 1 2806 0 -chrXII 945260 948146 Fusion_TU_269_tx_1 1 + 945260 948146 . 1 2887 0 -chrXII 1028837 1030622 Fusion_TU_270_tx_1 1 + 1028837 1030622 . 1 1786 0 -chrXII 1038914 1043045 Fusion_TU_291_tx_1 1 - 1038914 1043045 . 1 4132 0 -chrXIII 18844 21723 Fusion_TU_312_tx_1 1 - 18844 21723 . 1 2880 0 -chrXIII 43997 46041 Fusion_TU_292_tx_1 1 + 43997 46041 . 1 2045 0 -chrXIII 54732 57876 Fusion_TU_293_tx_1 1 + 54732 57876 . 1 3145 0 -chrXIII 57746 62262 Fusion_TU_313_tx_1 1 - 57746 62262 . 2 1339,3121 0,1396 -chrXIII 62531 67587 Fusion_TU_314_tx_1 4 - 62531 67587 . 1 5057 0 -chrXIII 70233 74036 Fusion_TU_294_tx_1 2 + 70233 74036 . 1 3804 0 -chrXIII 70563 74036 Fusion_TU_294_tx_2 14 + 70563 74036 . 1 3474 0 -chrXIII 70563 74036 Fusion_TU_294_tx_3 1 + 70563 74036 . 2 2512,901 0,2573 -chrXIII 70563 74036 Fusion_TU_294_tx_4 1 + 70563 74036 . 2 2460,900 0,2574 -chrXIII 70563 74036 Fusion_TU_294_tx_5 1 + 70563 74036 . 2 1401,842 0,2632 -chrXIII 70563 74036 Fusion_TU_294_tx_6 1 + 70563 74036 . 2 1253,2150 0,1324 -chrXIII 70873 74036 Fusion_TU_294_tx_7 2 + 70873 74036 . 1 3164 0 -chrXIII 71013 74036 Fusion_TU_294_tx_8 3 + 71013 74036 . 1 3024 0 -chrXIII 159349 162124 Fusion_TU_295_tx_1 1 + 159349 162124 . 1 2776 0 -chrXIII 174099 177843 Fusion_TU_315_tx_1 2 - 174099 177843 . 1 3745 0 -chrXIII 174099 178178 Fusion_TU_315_tx_2 1 - 174099 178178 . 2 1156,2820 0,1260 -chrXIII 174099 178178 Fusion_TU_315_tx_3 2 - 174099 178178 . 1 4080 0 -chrXIII 174099 178178 Fusion_TU_315_tx_4 1 - 174099 178178 . 2 85,3902 0,178 -chrXIII 214150 217156 Fusion_TU_296_tx_1 1 + 214150 217156 . 1 3007 0 -chrXIII 251110 252339 Fusion_TU_316_tx_1 1 - 251110 252339 . 1 1230 0 -chrXIII 302598 305890 Fusion_TU_317_tx_1 1 - 302598 305890 . 1 3293 0 -chrXIII 303114 305627 Fusion_TU_317_tx_2 1 - 303114 305627 . 1 2514 0 -chrXIII 303114 305627 Fusion_TU_317_tx_3 1 - 303114 305627 . 2 1908,125 0,2389 -chrXIII 303114 305818 Fusion_TU_317_tx_4 8 - 303114 305818 . 1 2705 0 -chrXIII 303114 305911 Fusion_TU_317_tx_5 5 - 303114 305911 . 1 2798 0 -chrXIII 413111 416150 Fusion_TU_297_tx_1 1 + 413111 416150 . 1 3040 0 -chrXIII 434112 436035 Fusion_TU_298_tx_1 1 + 434112 436035 . 1 1924 0 -chrXIII 434178 436035 Fusion_TU_298_tx_2 2 + 434178 436035 . 1 1858 0 -chrXIII 439189 442234 Fusion_TU_299_tx_1 5 + 439189 442234 . 1 3046 0 -chrXIII 439189 442312 Fusion_TU_299_tx_2 1 + 439189 442312 . 1 3124 0 -chrXIII 439189 442490 Fusion_TU_299_tx_3 1 + 439189 442490 . 1 3302 0 -chrXIII 439189 442852 Fusion_TU_299_tx_4 1 + 439189 442852 . 1 3664 0 -chrXIII 439491 442234 Fusion_TU_299_tx_5 1 + 439491 442234 . 1 2744 0 -chrXIII 465945 468401 Fusion_TU_300_tx_1 8 + 465945 468401 . 1 2457 0 -chrXIII 466378 468401 Fusion_TU_300_tx_2 3 + 466378 468401 . 1 2024 0 -chrXIII 466462 468401 Fusion_TU_300_tx_3 2 + 466462 468401 . 1 1940 0 -chrXIII 466708 468401 Fusion_TU_300_tx_4 2 + 466708 468401 . 1 1694 0 -chrXIII 511270 512202 Fusion_TU_301_tx_1 11 + 511270 512202 . 1 933 0 -chrXIII 511987 513355 Fusion_TU_302_tx_1 1 + 511987 513355 . 1 1369 0 -chrXIII 514430 520643 Fusion_TU_303_tx_1 1 + 514430 520643 . 2 744,5242 0,972 -chrXIII 575018 578679 Fusion_TU_304_tx_1 1 + 575018 578679 . 1 3662 0 -chrXIII 575018 578801 Fusion_TU_304_tx_2 2 + 575018 578801 . 1 3784 0 -chrXIII 650025 652011 Fusion_TU_305_tx_1 2 + 650025 652011 . 1 1987 0 -chrXIII 659472 662405 Fusion_TU_306_tx_1 1 + 659472 662405 . 1 2934 0 -chrXIII 659971 662405 Fusion_TU_306_tx_2 1 + 659971 662405 . 1 2435 0 -chrXIII 669758 674110 Fusion_TU_318_tx_1 1 - 669758 674110 . 1 4353 0 -chrXIII 685742 688847 Fusion_TU_319_tx_1 1 - 685742 688847 . 1 3106 0 -chrXIII 695925 698503 Fusion_TU_307_tx_1 1 + 695925 698503 . 2 532,1731 0,848 -chrXIII 721531 722930 Fusion_TU_320_tx_1 1 - 721531 722930 . 1 1400 0 -chrXIII 721531 723105 Fusion_TU_320_tx_2 2 - 721531 723105 . 1 1575 0 -chrXIII 732381 736824 Fusion_TU_308_tx_1 1 + 732381 736824 . 1 4444 0 -chrXIII 762987 768110 Fusion_TU_321_tx_1 1 - 762987 768110 . 1 5124 0 -chrXIII 775976 777822 Fusion_TU_309_tx_1 3 + 775976 777822 . 1 1847 0 -chrXIII 809454 811406 Fusion_TU_322_tx_1 1 - 809454 811406 . 1 1953 0 -chrXIII 863127 864406 Fusion_TU_310_tx_1 1 + 863127 864406 . 1 1280 0 -chrXIII 892673 894343 Fusion_TU_459_tx_1 13 - 892673 894343 . 1 1671 0 -chrXIII 892673 894586 Fusion_TU_459_tx_2 15 - 892673 894586 . 1 1914 0 -chrXIII 892673 894903 Fusion_TU_459_tx_3 1 - 892673 894903 . 3 823,349,610 0,1140,1621 -chrXIII 892673 894903 Fusion_TU_459_tx_4 9 - 892673 894903 . 1 2231 0 -chrXIII 892673 895318 Fusion_TU_459_tx_5 10 - 892673 895318 . 1 2646 0 -chrXIII 892673 895318 Fusion_TU_459_tx_6 1 - 892673 895318 . 2 1724,411 0,2235 -chrXIII 892673 895483 Fusion_TU_459_tx_7 78 - 892673 895483 . 1 2811 0 -chrXIII 892673 895483 Fusion_TU_459_tx_8 1 - 892673 895483 . 2 1184,1523 0,1288 -chrXIII 892673 895483 Fusion_TU_459_tx_9 1 - 892673 895483 . 2 1239,1480 0,1331 -chrXIII 892673 895483 Fusion_TU_459_tx_10 1 - 892673 895483 . 2 1272,1417 0,1394 -chrXIII 892673 895483 Fusion_TU_459_tx_11 1 - 892673 895483 . 2 1384,1379 0,1432 -chrXIII 892673 895483 Fusion_TU_459_tx_12 1 - 892673 895483 . 2 1431,1329 0,1482 -chrXIII 892673 895483 Fusion_TU_459_tx_13 1 - 892673 895483 . 2 1184,1480 0,1331 -chrXIII 892673 895483 Fusion_TU_459_tx_14 1 - 892673 895483 . 2 1885,853 0,1958 -chrXIII 892673 895483 Fusion_TU_459_tx_15 1 - 892673 895483 . 2 1777,940 0,1871 -chrXIII 892673 895483 Fusion_TU_459_tx_16 1 - 892673 895483 . 2 1314,1376 0,1435 -chrXIII 892673 895483 Fusion_TU_459_tx_17 1 - 892673 895483 . 2 1239,1414 0,1397 -chrXIII 892673 895483 Fusion_TU_459_tx_18 1 - 892673 895483 . 2 1225,1467 0,1344 -chrXIII 892673 895483 Fusion_TU_459_tx_19 1 - 892673 895483 . 2 1376,1298 0,1513 -chrXIII 892673 896714 Fusion_TU_459_tx_20 1 - 892673 896714 . 2 1150,2843 0,1199 -chrXIII 895642 897429 Fusion_TU_323_tx_1 1 - 895642 897429 . 1 1788 0 -chrXIII 901666 903948 Fusion_TU_311_tx_1 3 + 901666 903948 . 1 2283 0 -chrXIV 24016 27231 Fusion_TU_324_tx_1 1 + 24016 27231 . 1 3216 0 -chrXIV 24016 27252 Fusion_TU_324_tx_2 1 + 24016 27252 . 1 3237 0 -chrXIV 24016 27264 Fusion_TU_324_tx_3 1 + 24016 27264 . 2 727,1817 0,1432 -chrXIV 24016 27264 Fusion_TU_324_tx_4 1 + 24016 27264 . 1 3249 0 -chrXIV 24016 27267 Fusion_TU_324_tx_5 1 + 24016 27267 . 1 3252 0 -chrXIV 24016 27268 Fusion_TU_324_tx_6 1 + 24016 27268 . 1 3253 0 -chrXIV 24016 27270 Fusion_TU_324_tx_7 1 + 24016 27270 . 1 3255 0 -chrXIV 24016 27272 Fusion_TU_324_tx_8 1 + 24016 27272 . 1 3257 0 -chrXIV 24016 27276 Fusion_TU_324_tx_9 1 + 24016 27276 . 1 3261 0 -chrXIV 24016 27278 Fusion_TU_324_tx_10 1 + 24016 27278 . 1 3263 0 -chrXIV 24016 27279 Fusion_TU_324_tx_11 1 + 24016 27279 . 1 3264 0 -chrXIV 24016 27280 Fusion_TU_324_tx_12 2 + 24016 27280 . 1 3265 0 -chrXIV 24016 27286 Fusion_TU_324_tx_13 2 + 24016 27286 . 1 3271 0 -chrXIV 24016 27288 Fusion_TU_324_tx_14 2 + 24016 27288 . 1 3273 0 -chrXIV 24016 27290 Fusion_TU_324_tx_15 1 + 24016 27290 . 1 3275 0 -chrXIV 24016 27292 Fusion_TU_324_tx_16 6 + 24016 27292 . 1 3277 0 -chrXIV 24016 27295 Fusion_TU_324_tx_17 4 + 24016 27295 . 1 3280 0 -chrXIV 24016 27297 Fusion_TU_324_tx_18 1 + 24016 27297 . 1 3282 0 -chrXIV 24016 27298 Fusion_TU_324_tx_19 1 + 24016 27298 . 2 88,2517 0,766 -chrXIV 24209 27287 Fusion_TU_324_tx_20 1 + 24209 27287 . 2 1151,1775 0,1304 -chrXIV 24264 27285 Fusion_TU_324_tx_21 1 + 24264 27285 . 1 3022 0 -chrXIV 24264 27288 Fusion_TU_324_tx_22 1 + 24264 27288 . 1 3025 0 -chrXIV 24812 27248 Fusion_TU_324_tx_23 1 + 24812 27248 . 1 2437 0 -chrXIV 24812 27277 Fusion_TU_324_tx_24 1 + 24812 27277 . 1 2466 0 -chrXIV 24812 27280 Fusion_TU_324_tx_25 1 + 24812 27280 . 1 2469 0 -chrXIV 24812 27285 Fusion_TU_324_tx_26 2 + 24812 27285 . 1 2474 0 -chrXIV 24812 27286 Fusion_TU_324_tx_27 2 + 24812 27286 . 1 2475 0 -chrXIV 24812 27287 Fusion_TU_324_tx_28 1 + 24812 27287 . 1 2476 0 -chrXIV 24812 27292 Fusion_TU_324_tx_29 2 + 24812 27292 . 1 2481 0 -chrXIV 25161 27227 Fusion_TU_324_tx_30 2 + 25161 27227 . 1 2067 0 -chrXIV 25161 27230 Fusion_TU_324_tx_31 1 + 25161 27230 . 1 2070 0 -chrXIV 25161 27244 Fusion_TU_324_tx_32 1 + 25161 27244 . 1 2084 0 -chrXIV 25161 27264 Fusion_TU_324_tx_33 2 + 25161 27264 . 1 2104 0 -chrXIV 25161 27268 Fusion_TU_324_tx_34 1 + 25161 27268 . 1 2108 0 -chrXIV 25161 27276 Fusion_TU_324_tx_35 1 + 25161 27276 . 1 2116 0 -chrXIV 25161 27277 Fusion_TU_324_tx_36 1 + 25161 27277 . 1 2117 0 -chrXIV 25161 27278 Fusion_TU_324_tx_37 1 + 25161 27278 . 1 2118 0 -chrXIV 25161 27279 Fusion_TU_324_tx_38 1 + 25161 27279 . 1 2119 0 -chrXIV 25161 27280 Fusion_TU_324_tx_39 1 + 25161 27280 . 1 2120 0 -chrXIV 25161 27285 Fusion_TU_324_tx_40 2 + 25161 27285 . 1 2125 0 -chrXIV 25161 27285 Fusion_TU_324_tx_41 1 + 25161 27285 . 2 1606,439 0,1686 -chrXIV 25161 27286 Fusion_TU_324_tx_42 2 + 25161 27286 . 1 2126 0 -chrXIV 25161 27287 Fusion_TU_324_tx_43 1 + 25161 27287 . 1 2127 0 -chrXIV 25161 27290 Fusion_TU_324_tx_44 1 + 25161 27290 . 1 2130 0 -chrXIV 25161 27292 Fusion_TU_324_tx_45 3 + 25161 27292 . 1 2132 0 -chrXIV 25161 27295 Fusion_TU_324_tx_46 2 + 25161 27295 . 1 2135 0 -chrXIV 25368 27268 Fusion_TU_324_tx_47 1 + 25368 27268 . 1 1901 0 -chrXIV 25368 27271 Fusion_TU_324_tx_48 1 + 25368 27271 . 1 1904 0 -chrXIV 25368 27280 Fusion_TU_324_tx_49 1 + 25368 27280 . 2 70,1389 0,524 -chrXIV 25368 27280 Fusion_TU_324_tx_50 1 + 25368 27280 . 1 1913 0 -chrXIV 25368 27286 Fusion_TU_324_tx_51 2 + 25368 27286 . 1 1919 0 -chrXIV 25368 27287 Fusion_TU_324_tx_52 1 + 25368 27287 . 1 1920 0 -chrXIV 25368 27288 Fusion_TU_324_tx_53 1 + 25368 27288 . 1 1921 0 -chrXIV 25368 27290 Fusion_TU_324_tx_54 1 + 25368 27290 . 1 1923 0 -chrXIV 25368 27292 Fusion_TU_324_tx_55 3 + 25368 27292 . 1 1925 0 -chrXIV 25368 27295 Fusion_TU_324_tx_56 1 + 25368 27295 . 1 1928 0 -chrXIV 25368 27296 Fusion_TU_324_tx_57 1 + 25368 27296 . 1 1929 0 -chrXIV 156486 157895 Fusion_TU_342_tx_1 1 - 156486 157895 . 1 1410 0 -chrXIV 184831 185835 Fusion_TU_325_tx_1 1 + 184831 185835 . 1 1005 0 -chrXIV 212534 216004 Fusion_TU_326_tx_1 1 + 212534 216004 . 1 3471 0 -chrXIV 284255 287678 Fusion_TU_327_tx_1 1 + 284255 287678 . 1 3424 0 -chrXIV 316057 318405 Fusion_TU_343_tx_1 1 - 316057 318405 . 2 1603,421 0,1928 -chrXIV 316057 318405 Fusion_TU_343_tx_2 2 - 316057 318405 . 1 2349 0 -chrXIV 316057 318504 Fusion_TU_343_tx_3 1 - 316057 318504 . 1 2448 0 -chrXIV 316057 318851 Fusion_TU_343_tx_4 2 - 316057 318851 . 1 2795 0 -chrXIV 347543 349742 Fusion_TU_344_tx_1 1 - 347543 349742 . 2 941,1182 0,1018 -chrXIV 347543 349775 Fusion_TU_344_tx_2 1 - 347543 349775 . 1 2233 0 -chrXIV 349738 351448 Fusion_TU_345_tx_1 1 - 349738 351448 . 1 1711 0 -chrXIV 351644 352705 Fusion_TU_328_tx_1 1 + 351644 352705 . 1 1062 0 -chrXIV 355864 359032 Fusion_TU_329_tx_1 1 + 355864 359032 . 1 3169 0 -chrXIV 366144 368484 Fusion_TU_330_tx_1 1 + 366144 368484 . 1 2341 0 -chrXIV 368375 372027 Fusion_TU_346_tx_1 1 - 368375 372027 . 1 3653 0 -chrXIV 371687 373627 Fusion_TU_347_tx_1 1 - 371687 373627 . 1 1941 0 -chrXIV 372372 374713 Fusion_TU_348_tx_1 1 - 372372 374713 . 1 2342 0 -chrXIV 444837 449586 Fusion_TU_331_tx_1 1 + 444837 449586 . 1 4750 0 -chrXIV 462303 466141 Fusion_TU_460_tx_1 6 + 462303 466141 . 1 3839 0 -chrXIV 462303 466141 Fusion_TU_460_tx_2 1 + 462303 466141 . 2 2674,1059 0,2780 -chrXIV 462303 466141 Fusion_TU_460_tx_3 1 + 462303 466141 . 2 1143,2629 0,1210 -chrXIV 462303 466141 Fusion_TU_460_tx_4 1 + 462303 466141 . 2 2662,1113 0,2726 -chrXIV 464308 466141 Fusion_TU_460_tx_5 2 + 464308 466141 . 1 1834 0 -chrXIV 464388 466141 Fusion_TU_460_tx_6 1 + 464388 466141 . 1 1754 0 -chrXIV 464707 466141 Fusion_TU_460_tx_7 4 + 464707 466141 . 1 1435 0 -chrXIV 464775 466141 Fusion_TU_460_tx_8 4 + 464775 466141 . 1 1367 0 -chrXIV 466249 469924 Fusion_TU_332_tx_1 1 + 466249 469924 . 1 3676 0 -chrXIV 466867 469924 Fusion_TU_332_tx_2 22 + 466867 469924 . 1 3058 0 -chrXIV 466867 470060 Fusion_TU_332_tx_3 1 + 466867 470060 . 1 3194 0 -chrXIV 466952 469924 Fusion_TU_332_tx_4 4 + 466952 469924 . 1 2973 0 -chrXIV 467171 469924 Fusion_TU_332_tx_5 1 + 467171 469924 . 1 2754 0 -chrXIV 467171 470060 Fusion_TU_332_tx_6 1 + 467171 470060 . 1 2890 0 -chrXIV 467404 469924 Fusion_TU_332_tx_7 7 + 467404 469924 . 1 2521 0 -chrXIV 467404 470060 Fusion_TU_332_tx_8 1 + 467404 470060 . 1 2657 0 -chrXIV 467676 469924 Fusion_TU_332_tx_9 5 + 467676 469924 . 1 2249 0 -chrXIV 467676 469924 Fusion_TU_332_tx_10 1 + 467676 469924 . 2 1183,1002 0,1247 -chrXIV 467676 470060 Fusion_TU_332_tx_11 1 + 467676 470060 . 1 2385 0 -chrXIV 467908 469924 Fusion_TU_332_tx_12 5 + 467908 469924 . 1 2017 0 -chrXIV 467908 470060 Fusion_TU_332_tx_13 2 + 467908 470060 . 1 2153 0 -chrXIV 476832 479206 Fusion_TU_349_tx_1 4 - 476832 479206 . 1 2375 0 -chrXIV 491491 493686 Fusion_TU_333_tx_1 2 + 491491 493686 . 1 2196 0 -chrXIV 500931 502974 Fusion_TU_334_tx_1 145 + 500931 502974 . 2 226,1472 0,572 -chrXIV 500931 502974 Fusion_TU_334_tx_2 1 + 500931 502974 . 2 177,1224 0,820 -chrXIV 500931 502974 Fusion_TU_334_tx_3 1 + 500931 502974 . 2 190,1520 0,524 -chrXIV 500931 502974 Fusion_TU_334_tx_4 3 + 500931 502974 . 1 2044 0 -chrXIV 500931 502974 Fusion_TU_334_tx_5 1 + 500931 502974 . 2 155,1137 0,907 -chrXIV 500931 502974 Fusion_TU_334_tx_6 1 + 500931 502974 . 2 190,1434 0,610 -chrXIV 500931 502974 Fusion_TU_334_tx_7 1 + 500931 502974 . 2 107,1221 0,823 -chrXIV 500931 502974 Fusion_TU_334_tx_8 1 + 500931 502974 . 2 139,1440 0,604 -chrXIV 500931 502974 Fusion_TU_334_tx_9 1 + 500931 502974 . 2 272,1472 0,572 -chrXIV 500931 502974 Fusion_TU_334_tx_10 1 + 500931 502974 . 2 155,580 0,1464 -chrXIV 500931 502974 Fusion_TU_334_tx_11 1 + 500931 502974 . 3 226,544,844 0,572,1200 -chrXIV 500931 502974 Fusion_TU_334_tx_12 1 + 500931 502974 . 2 155,1065 0,979 -chrXIV 500931 502974 Fusion_TU_334_tx_13 1 + 500931 502974 . 2 223,1472 0,572 -chrXIV 500931 502974 Fusion_TU_334_tx_14 1 + 500931 502974 . 2 257,1472 0,572 -chrXIV 500931 503076 Fusion_TU_334_tx_15 1 + 500931 503076 . 2 226,1574 0,572 -chrXIV 500931 503170 Fusion_TU_334_tx_16 4 + 500931 503170 . 2 226,1668 0,572 -chrXIV 500931 503608 Fusion_TU_334_tx_17 2 + 500931 503608 . 2 226,2106 0,572 -chrXIV 529831 532444 Fusion_TU_335_tx_1 2 + 529831 532444 . 1 2614 0 -chrXIV 529831 532444 Fusion_TU_335_tx_2 1 + 529831 532444 . 2 840,1549 0,1065 -chrXIV 553334 556886 Fusion_TU_336_tx_1 1 + 553334 556886 . 1 3553 0 -chrXIV 586390 587706 Fusion_TU_350_tx_1 1 - 586390 587706 . 1 1317 0 -chrXIV 587003 591210 Fusion_TU_351_tx_1 1 - 587003 591210 . 1 4208 0 -chrXIV 609580 613191 Fusion_TU_352_tx_1 1 - 609580 613191 . 1 3612 0 -chrXIV 618452 619580 Fusion_TU_353_tx_1 33 - 618452 619580 . 1 1129 0 -chrXIV 618452 619580 Fusion_TU_353_tx_2 1 - 618452 619580 . 2 851,167 0,962 -chrXIV 618452 619580 Fusion_TU_353_tx_3 1 - 618452 619580 . 2 248,834 0,295 -chrXIV 618452 619693 Fusion_TU_353_tx_4 240 - 618452 619693 . 1 1242 0 -chrXIV 618452 619693 Fusion_TU_353_tx_5 1 - 618452 619693 . 2 435,736 0,506 -chrXIV 618452 619693 Fusion_TU_353_tx_6 1 - 618452 619693 . 2 311,387 0,855 -chrXIV 618452 619693 Fusion_TU_353_tx_7 1 - 618452 619693 . 2 245,447 0,795 -chrXIV 618452 619693 Fusion_TU_353_tx_8 1 - 618452 619693 . 2 142,1052 0,190 -chrXIV 618452 619693 Fusion_TU_353_tx_9 1 - 618452 619693 . 2 323,447 0,795 -chrXIV 618452 619693 Fusion_TU_353_tx_10 1 - 618452 619693 . 2 524,671 0,571 -chrXIV 618452 619693 Fusion_TU_353_tx_11 1 - 618452 619693 . 2 376,652 0,590 -chrXIV 618452 619693 Fusion_TU_353_tx_12 1 - 618452 619693 . 2 476,332 0,910 -chrXIV 618452 619693 Fusion_TU_353_tx_13 1 - 618452 619693 . 2 508,618 0,624 -chrXIV 618452 619693 Fusion_TU_353_tx_14 1 - 618452 619693 . 2 353,481 0,761 -chrXIV 618452 619693 Fusion_TU_353_tx_15 1 - 618452 619693 . 2 357,351 0,891 -chrXIV 618452 619693 Fusion_TU_353_tx_16 1 - 618452 619693 . 2 570,387 0,855 -chrXIV 654566 658625 Fusion_TU_354_tx_1 1 - 654566 658625 . 1 4060 0 -chrXIV 654566 658625 Fusion_TU_354_tx_2 1 - 654566 658625 . 4 1186,383,289,1830 0,1255,1697,2230 -chrXIV 654566 658932 Fusion_TU_354_tx_3 1 - 654566 658932 . 1 4367 0 -chrXIV 654566 659370 Fusion_TU_354_tx_4 1 - 654566 659370 . 3 2868,568,192 0,2988,4613 -chrXIV 654566 660186 Fusion_TU_354_tx_5 1 - 654566 660186 . 1 5621 0 -chrXIV 654566 661233 Fusion_TU_354_tx_6 1 - 654566 661233 . 1 6668 0 -chrXIV 654566 661909 Fusion_TU_354_tx_7 7 - 654566 661909 . 1 7344 0 -chrXIV 654566 661909 Fusion_TU_354_tx_8 1 - 654566 661909 . 2 5554,1659 0,5685 -chrXIV 662693 665074 Fusion_TU_337_tx_1 1 + 662693 665074 . 1 2382 0 -chrXIV 664248 667328 Fusion_TU_338_tx_1 1 + 664248 667328 . 2 1626,1394 0,1687 -chrXIV 692854 694833 Fusion_TU_355_tx_1 1 - 692854 694833 . 1 1980 0 -chrXIV 694208 695344 Fusion_TU_356_tx_1 1 - 694208 695344 . 2 348,745 0,392 -chrXIV 699684 703433 Fusion_TU_339_tx_1 1 + 699684 703433 . 1 3750 0 -chrXIV 706113 708339 Fusion_TU_340_tx_1 1 + 706113 708339 . 1 2227 0 -chrXIV 707775 711322 Fusion_TU_341_tx_1 1 + 707775 711322 . 1 3548 0 -chrXIV 707775 711415 Fusion_TU_341_tx_2 2 + 707775 711415 . 1 3641 0 -chrXIV 708463 711322 Fusion_TU_341_tx_3 2 + 708463 711322 . 1 2860 0 -chrXIV 708463 711415 Fusion_TU_341_tx_4 2 + 708463 711415 . 1 2953 0 -chrXIV 716317 717402 Fusion_TU_357_tx_1 10 - 716317 717402 . 1 1086 0 -chrXIV 716317 717658 Fusion_TU_357_tx_2 12 - 716317 717658 . 1 1342 0 -chrXIV 716317 717730 Fusion_TU_357_tx_3 6 - 716317 717730 . 1 1414 0 -chrXIV 716317 717944 Fusion_TU_357_tx_4 3 - 716317 717944 . 1 1628 0 -chrXIV 716317 718017 Fusion_TU_357_tx_5 9 - 716317 718017 . 1 1701 0 -chrXIV 716317 718017 Fusion_TU_357_tx_6 1 - 716317 718017 . 2 1092,177 0,1524 -chrXIV 716317 718323 Fusion_TU_357_tx_7 7 - 716317 718323 . 1 2007 0 -chrXIV 716317 718635 Fusion_TU_357_tx_8 5 - 716317 718635 . 1 2319 0 -chrXIV 716317 719073 Fusion_TU_357_tx_9 22 - 716317 719073 . 1 2757 0 -chrXIV 716317 719073 Fusion_TU_357_tx_10 1 - 716317 719073 . 2 976,1012 0,1745 -chrXIV 718615 719650 Fusion_TU_358_tx_1 1 - 718615 719650 . 1 1036 0 -chrXIV 774670 778887 Fusion_TU_359_tx_1 1 - 774670 778887 . 1 4218 0 -chrXV 1360 3301 Fusion_TU_395_tx_1 1 - 1360 3301 . 1 1942 0 -chrXV 2055 4123 Fusion_TU_360_tx_1 1 + 2055 4123 . 1 2069 0 -chrXV 7030 9102 Fusion_TU_361_tx_1 1 + 7030 9102 . 1 2073 0 -chrXV 30513 35505 Fusion_TU_461_tx_1 1 + 30513 35505 . 1 4993 0 -chrXV 31229 33004 Fusion_TU_461_tx_2 1 + 31229 33004 . 1 1776 0 -chrXV 44055 45754 Fusion_TU_362_tx_1 1 + 44055 45754 . 1 1700 0 -chrXV 70290 72777 Fusion_TU_363_tx_1 1 + 70290 72777 . 1 2488 0 -chrXV 87477 89588 Fusion_TU_364_tx_1 87 + 87477 89588 . 1 2112 0 -chrXV 87477 89588 Fusion_TU_364_tx_2 1 + 87477 89588 . 2 692,1336 0,776 -chrXV 87477 89588 Fusion_TU_364_tx_3 1 + 87477 89588 . 2 264,1325 0,787 -chrXV 87477 89588 Fusion_TU_364_tx_4 1 + 87477 89588 . 2 1161,894 0,1218 -chrXV 87477 89588 Fusion_TU_364_tx_5 1 + 87477 89588 . 2 1745,245 0,1867 -chrXV 87477 89588 Fusion_TU_364_tx_6 1 + 87477 89588 . 2 381,1566 0,546 -chrXV 87477 89588 Fusion_TU_364_tx_7 1 + 87477 89588 . 2 511,1248 0,864 -chrXV 87591 89588 Fusion_TU_364_tx_8 7 + 87591 89588 . 1 1998 0 -chrXV 87694 89588 Fusion_TU_364_tx_9 6 + 87694 89588 . 1 1895 0 -chrXV 87886 89588 Fusion_TU_364_tx_10 5 + 87886 89588 . 1 1703 0 -chrXV 87946 89588 Fusion_TU_364_tx_11 7 + 87946 89588 . 1 1643 0 -chrXV 87946 89588 Fusion_TU_364_tx_12 1 + 87946 89588 . 2 1517,69 0,1574 -chrXV 96652 99584 Fusion_TU_365_tx_1 1 + 96652 99584 . 1 2933 0 -chrXV 97513 101264 Fusion_TU_366_tx_1 3 + 97513 101264 . 1 3752 0 -chrXV 97513 101264 Fusion_TU_366_tx_2 1 + 97513 101264 . 2 2392,1315 0,2437 -chrXV 101481 103350 Fusion_TU_367_tx_1 22 + 101481 103350 . 1 1870 0 -chrXV 101481 103350 Fusion_TU_367_tx_2 1 + 101481 103350 . 2 945,860 0,1010 -chrXV 101481 103350 Fusion_TU_367_tx_3 1 + 101481 103350 . 2 957,839 0,1031 -chrXV 101481 103350 Fusion_TU_367_tx_4 1 + 101481 103350 . 2 978,833 0,1037 -chrXV 101481 103350 Fusion_TU_367_tx_5 1 + 101481 103350 . 2 869,613 0,1257 -chrXV 101481 103350 Fusion_TU_367_tx_6 1 + 101481 103350 . 2 1012,814 0,1056 -chrXV 101481 103350 Fusion_TU_367_tx_7 1 + 101481 103350 . 2 945,816 0,1054 -chrXV 101481 103350 Fusion_TU_367_tx_8 1 + 101481 103350 . 2 978,811 0,1059 -chrXV 101481 103350 Fusion_TU_367_tx_9 1 + 101481 103350 . 2 960,798 0,1072 -chrXV 155198 160633 Fusion_TU_396_tx_1 1 - 155198 160633 . 1 5436 0 -chrXV 202629 205918 Fusion_TU_397_tx_1 1 - 202629 205918 . 1 3290 0 -chrXV 219138 223050 Fusion_TU_368_tx_1 1 + 219138 223050 . 2 1305,2513 0,1400 -chrXV 219138 223050 Fusion_TU_368_tx_2 2 + 219138 223050 . 1 3913 0 -chrXV 226922 228030 Fusion_TU_369_tx_1 1 + 226922 228030 . 1 1109 0 -chrXV 234749 238410 Fusion_TU_370_tx_1 2 + 234749 238410 . 1 3662 0 -chrXV 234765 238410 Fusion_TU_370_tx_2 1 + 234765 238410 . 2 868,2720 0,926 -chrXV 234893 238410 Fusion_TU_370_tx_3 2 + 234893 238410 . 1 3518 0 -chrXV 235137 238410 Fusion_TU_370_tx_4 1 + 235137 238410 . 1 3274 0 -chrXV 235416 238410 Fusion_TU_370_tx_5 2 + 235416 238410 . 1 2995 0 -chrXV 235632 238410 Fusion_TU_370_tx_6 1 + 235632 238410 . 2 1418,1214 0,1565 -chrXV 235632 238410 Fusion_TU_370_tx_7 1 + 235632 238410 . 1 2779 0 -chrXV 251107 253228 Fusion_TU_398_tx_1 1 - 251107 253228 . 2 1059,966 0,1156 -chrXV 254268 256249 Fusion_TU_462_tx_1 1 + 254268 256249 . 2 542,977 0,1005 -chrXV 254268 256648 Fusion_TU_462_tx_2 1 + 254268 256648 . 1 2381 0 -chrXV 255305 256648 Fusion_TU_462_tx_3 1 + 255305 256648 . 1 1344 0 -chrXV 256351 259181 Fusion_TU_371_tx_1 12 + 256351 259181 . 1 2831 0 -chrXV 256508 259181 Fusion_TU_371_tx_2 2 + 256508 259181 . 1 2674 0 -chrXV 364321 367063 Fusion_TU_372_tx_1 4 + 364321 367063 . 1 2743 0 -chrXV 368714 370883 Fusion_TU_399_tx_1 1 - 368714 370883 . 2 686,1012 0,1158 -chrXV 368714 370883 Fusion_TU_399_tx_2 1 - 368714 370883 . 1 2170 0 -chrXV 372643 375888 Fusion_TU_400_tx_1 1 - 372643 375888 . 1 3246 0 -chrXV 392347 397134 Fusion_TU_401_tx_1 1 - 392347 397134 . 1 4788 0 -chrXV 392347 397341 Fusion_TU_401_tx_2 1 - 392347 397341 . 1 4995 0 -chrXV 400344 402739 Fusion_TU_373_tx_1 1 + 400344 402739 . 1 2396 0 -chrXV 405601 408143 Fusion_TU_374_tx_1 1 + 405601 408143 . 1 2543 0 -chrXV 412851 414198 Fusion_TU_375_tx_1 1 + 412851 414198 . 1 1348 0 -chrXV 426503 428147 Fusion_TU_402_tx_1 1 - 426503 428147 . 2 492,165 0,1480 -chrXV 444137 445969 Fusion_TU_376_tx_1 3 + 444137 445969 . 1 1833 0 -chrXV 474592 476833 Fusion_TU_377_tx_1 1 + 474592 476833 . 1 2242 0 -chrXV 474592 476833 Fusion_TU_377_tx_2 1 + 474592 476833 . 2 1279,861 0,1381 -chrXV 474592 476967 Fusion_TU_377_tx_3 8 + 474592 476967 . 1 2376 0 -chrXV 490001 491473 Fusion_TU_463_tx_1 1 - 490001 491473 . 1 1473 0 -chrXV 490001 492967 Fusion_TU_463_tx_2 1 - 490001 492967 . 2 1942,751 0,2216 -chrXV 490001 492967 Fusion_TU_463_tx_3 2 - 490001 492967 . 1 2967 0 -chrXV 525176 528777 Fusion_TU_378_tx_1 8 + 525176 528777 . 1 3602 0 -chrXV 549350 550385 Fusion_TU_379_tx_1 1 + 549350 550385 . 1 1036 0 -chrXV 552111 554630 Fusion_TU_403_tx_1 2 - 552111 554630 . 1 2520 0 -chrXV 552111 554630 Fusion_TU_403_tx_2 1 - 552111 554630 . 2 959,1417 0,1103 -chrXV 573104 577798 Fusion_TU_380_tx_1 1 + 573104 577798 . 2 3674,974 0,3721 -chrXV 578236 578619 Fusion_TU_381_tx_1 1 + 578236 578619 . 1 384 0 -chrXV 622597 623506 Fusion_TU_382_tx_1 1 + 622597 623506 . 1 910 0 -chrXV 622726 623506 Fusion_TU_382_tx_2 2 + 622726 623506 . 1 781 0 -chrXV 622837 623506 Fusion_TU_382_tx_3 1 + 622837 623506 . 1 670 0 -chrXV 622843 623506 Fusion_TU_382_tx_4 5 + 622843 623506 . 1 664 0 -chrXV 681112 682177 Fusion_TU_383_tx_1 2 + 681112 682177 . 1 1066 0 -chrXV 721922 725447 Fusion_TU_384_tx_1 1 + 721922 725447 . 2 331,3005 0,521 -chrXV 811265 812279 Fusion_TU_385_tx_1 1 + 811265 812279 . 1 1015 0 -chrXV 811445 813279 Fusion_TU_404_tx_1 1 - 811445 813279 . 1 1835 0 -chrXV 838946 842183 Fusion_TU_405_tx_1 1 - 838946 842183 . 1 3238 0 -chrXV 841272 842682 Fusion_TU_386_tx_1 1 + 841272 842682 . 1 1411 0 -chrXV 842403 843798 Fusion_TU_387_tx_1 1 + 842403 843798 . 1 1396 0 -chrXV 848430 850123 Fusion_TU_388_tx_1 1 + 848430 850123 . 1 1694 0 -chrXV 849625 850818 Fusion_TU_389_tx_1 2 + 849625 850818 . 1 1194 0 -chrXV 849625 850932 Fusion_TU_389_tx_2 4 + 849625 850932 . 1 1308 0 -chrXV 849758 850932 Fusion_TU_389_tx_3 1 + 849758 850932 . 1 1175 0 -chrXV 882778 887966 Fusion_TU_390_tx_1 1 + 882778 887966 . 1 5189 0 -chrXV 884411 887966 Fusion_TU_391_tx_1 3 + 884411 887966 . 1 3556 0 -chrXV 884411 888185 Fusion_TU_391_tx_2 1 + 884411 888185 . 1 3775 0 -chrXV 889762 892259 Fusion_TU_406_tx_1 5 - 889762 892259 . 1 2498 0 -chrXV 889762 892259 Fusion_TU_406_tx_2 1 - 889762 892259 . 2 1167,1274 0,1224 -chrXV 898846 900618 Fusion_TU_407_tx_1 4 - 898846 900618 . 1 1773 0 -chrXV 898846 900618 Fusion_TU_407_tx_2 1 - 898846 900618 . 2 1444,103 0,1670 -chrXV 939551 943124 Fusion_TU_464_tx_1 1 - 939551 943124 . 1 3574 0 -chrXV 939551 943397 Fusion_TU_464_tx_2 1 - 939551 943397 . 1 3847 0 -chrXV 939558 940850 Fusion_TU_464_tx_3 1 - 939558 940850 . 1 1293 0 -chrXV 970272 976247 Fusion_TU_392_tx_1 1 + 970272 976247 . 2 1621,3836 0,2140 -chrXV 1025981 1027156 Fusion_TU_393_tx_1 1 + 1025981 1027156 . 1 1176 0 -chrXV 1028081 1034316 Fusion_TU_408_tx_1 1 - 1028081 1034316 . 1 6236 0 -chrXV 1044720 1048028 Fusion_TU_394_tx_1 1 + 1044720 1048028 . 1 3309 0 -chrXV 1044720 1048035 Fusion_TU_394_tx_2 1 + 1044720 1048035 . 1 3316 0 -chrXV 1044720 1048047 Fusion_TU_394_tx_3 1 + 1044720 1048047 . 1 3328 0 -chrXV 1044720 1048108 Fusion_TU_394_tx_4 1 + 1044720 1048108 . 1 3389 0 -chrXV 1060286 1064401 Fusion_TU_409_tx_1 2 - 1060286 1064401 . 1 4116 0 -chrXVI 17391 21838 Fusion_TU_433_tx_1 1 - 17391 21838 . 2 1658,2720 0,1728 -chrXVI 22878 26169 Fusion_TU_410_tx_1 1 + 22878 26169 . 1 3292 0 -chrXVI 30057 32904 Fusion_TU_411_tx_1 2 + 30057 32904 . 1 2848 0 -chrXVI 30474 32904 Fusion_TU_411_tx_2 17 + 30474 32904 . 1 2431 0 -chrXVI 99405 101470 Fusion_TU_412_tx_1 2 + 99405 101470 . 1 2066 0 -chrXVI 99417 101470 Fusion_TU_412_tx_2 1 + 99417 101470 . 2 388,1592 0,462 -chrXVI 99678 101470 Fusion_TU_412_tx_3 1 + 99678 101470 . 1 1793 0 -chrXVI 99697 101470 Fusion_TU_412_tx_4 1 + 99697 101470 . 3 122,383,1039 0,265,735 -chrXVI 104963 105929 Fusion_TU_413_tx_1 8 + 104963 105929 . 1 967 0 -chrXVI 106141 108230 Fusion_TU_414_tx_1 1 + 106141 108230 . 2 1035,992 0,1098 -chrXVI 106141 108230 Fusion_TU_414_tx_2 3 + 106141 108230 . 1 2090 0 -chrXVI 121740 125614 Fusion_TU_415_tx_1 36 + 121740 125614 . 1 3875 0 -chrXVI 121740 125614 Fusion_TU_415_tx_2 1 + 121740 125614 . 2 978,2398 0,1477 -chrXVI 121740 125614 Fusion_TU_415_tx_3 1 + 121740 125614 . 2 260,3566 0,309 -chrXVI 121740 125696 Fusion_TU_415_tx_4 1 + 121740 125696 . 1 3957 0 -chrXVI 121942 125614 Fusion_TU_415_tx_5 5 + 121942 125614 . 1 3673 0 -chrXVI 121942 125614 Fusion_TU_415_tx_6 1 + 121942 125614 . 2 1067,1422 0,2251 -chrXVI 122059 125614 Fusion_TU_415_tx_7 10 + 122059 125614 . 1 3556 0 -chrXVI 122059 125614 Fusion_TU_415_tx_8 1 + 122059 125614 . 2 2471,999 0,2557 -chrXVI 122550 125614 Fusion_TU_415_tx_9 5 + 122550 125614 . 1 3065 0 -chrXVI 122550 125614 Fusion_TU_415_tx_10 1 + 122550 125614 . 2 1660,1287 0,1778 -chrXVI 135777 138320 Fusion_TU_416_tx_1 2 + 135777 138320 . 1 2544 0 -chrXVI 135900 138320 Fusion_TU_416_tx_2 1 + 135900 138320 . 1 2421 0 -chrXVI 143390 147339 Fusion_TU_417_tx_1 1 + 143390 147339 . 1 3950 0 -chrXVI 169722 172768 Fusion_TU_434_tx_1 1 - 169722 172768 . 2 1637,1352 0,1695 -chrXVI 176205 178545 Fusion_TU_418_tx_1 1 + 176205 178545 . 1 2341 0 -chrXVI 176205 179129 Fusion_TU_418_tx_2 19 + 176205 179129 . 1 2925 0 -chrXVI 176205 179129 Fusion_TU_418_tx_3 1 + 176205 179129 . 2 188,2562 0,363 -chrXVI 194254 195480 Fusion_TU_435_tx_1 2 - 194254 195480 . 1 1227 0 -chrXVI 194359 195480 Fusion_TU_435_tx_2 1 - 194359 195480 . 1 1122 0 -chrXVI 203299 207815 Fusion_TU_419_tx_1 1 + 203299 207815 . 1 4517 0 -chrXVI 298468 301359 Fusion_TU_436_tx_1 2 - 298468 301359 . 1 2892 0 -chrXVI 301589 304114 Fusion_TU_420_tx_1 2 + 301589 304114 . 1 2526 0 -chrXVI 363182 364785 Fusion_TU_437_tx_1 1 - 363182 364785 . 1 1604 0 -chrXVI 368018 370024 Fusion_TU_438_tx_1 2 - 368018 370024 . 1 2007 0 -chrXVI 379636 381907 Fusion_TU_421_tx_1 1 + 379636 381907 . 1 2272 0 -chrXVI 381951 384515 Fusion_TU_422_tx_1 5 + 381951 384515 . 1 2565 0 -chrXVI 424147 425612 Fusion_TU_439_tx_1 2 - 424147 425612 . 1 1466 0 -chrXVI 424147 425904 Fusion_TU_439_tx_2 1 - 424147 425904 . 1 1758 0 -chrXVI 443590 444247 Fusion_TU_440_tx_1 3 - 443590 444247 . 1 658 0 -chrXVI 443590 444262 Fusion_TU_440_tx_2 1 - 443590 444262 . 1 673 0 -chrXVI 458741 460705 Fusion_TU_423_tx_1 2 + 458741 460705 . 1 1965 0 -chrXVI 467156 472102 Fusion_TU_424_tx_1 1 + 467156 472102 . 1 4947 0 -chrXVI 482488 486243 Fusion_TU_425_tx_1 1 + 482488 486243 . 2 2538,1116 0,2640 -chrXVI 482742 486243 Fusion_TU_425_tx_2 1 + 482742 486243 . 1 3502 0 -chrXVI 482869 486243 Fusion_TU_425_tx_3 1 + 482869 486243 . 1 3375 0 -chrXVI 506615 510212 Fusion_TU_426_tx_1 1 + 506615 510212 . 2 1224,1963 0,1635 -chrXVI 506615 510212 Fusion_TU_426_tx_2 3 + 506615 510212 . 1 3598 0 -chrXVI 506615 510607 Fusion_TU_426_tx_3 1 + 506615 510607 . 1 3993 0 -chrXVI 507174 510212 Fusion_TU_426_tx_4 1 + 507174 510212 . 1 3039 0 -chrXVI 507174 510607 Fusion_TU_426_tx_5 1 + 507174 510607 . 1 3434 0 -chrXVI 514430 516946 Fusion_TU_441_tx_1 1 - 514430 516946 . 1 2517 0 -chrXVI 514430 517154 Fusion_TU_441_tx_2 5 - 514430 517154 . 1 2725 0 -chrXVI 575122 575914 Fusion_TU_442_tx_1 2 - 575122 575914 . 1 793 0 -chrXVI 575544 580810 Fusion_TU_443_tx_1 1 - 575544 580810 . 1 5267 0 -chrXVI 575544 581230 Fusion_TU_443_tx_2 1 - 575544 581230 . 1 5687 0 -chrXVI 582222 584152 Fusion_TU_444_tx_1 2 - 582222 584152 . 1 1931 0 -chrXVI 582222 584152 Fusion_TU_444_tx_2 1 - 582222 584152 . 3 337,558,440 0,480,1491 -chrXVI 592188 593944 Fusion_TU_445_tx_1 2 - 592188 593944 . 1 1757 0 -chrXVI 657468 661129 Fusion_TU_427_tx_1 1 + 657468 661129 . 1 3662 0 -chrXVI 671089 673553 Fusion_TU_428_tx_1 3 + 671089 673553 . 1 2465 0 -chrXVI 718632 720489 Fusion_TU_446_tx_1 1 - 718632 720489 . 1 1858 0 -chrXVI 725157 728759 Fusion_TU_429_tx_1 2 + 725157 728759 . 1 3603 0 -chrXVI 725157 728759 Fusion_TU_429_tx_2 1 + 725157 728759 . 2 1938,1548 0,2055 -chrXVI 752231 754371 Fusion_TU_430_tx_1 20 + 752231 754371 . 1 2141 0 -chrXVI 752231 754437 Fusion_TU_430_tx_2 1 + 752231 754437 . 1 2207 0 -chrXVI 752326 754371 Fusion_TU_430_tx_3 2 + 752326 754371 . 1 2046 0 -chrXVI 752654 754371 Fusion_TU_430_tx_4 2 + 752654 754371 . 1 1718 0 -chrXVI 752654 754437 Fusion_TU_430_tx_5 1 + 752654 754437 . 1 1784 0 -chrXVI 753256 758453 Fusion_TU_431_tx_1 1 + 753256 758453 . 1 5198 0 -chrXVI 753256 758453 Fusion_TU_431_tx_2 1 + 753256 758453 . 2 3929,1226 0,3972 -chrXVI 753775 758453 Fusion_TU_431_tx_3 2 + 753775 758453 . 1 4679 0 -chrXVI 754677 758453 Fusion_TU_431_tx_4 8 + 754677 758453 . 1 3777 0 -chrXVI 754677 758453 Fusion_TU_431_tx_5 1 + 754677 758453 . 2 1185,2467 0,1310 -chrXVI 782000 785822 Fusion_TU_465_tx_1 2 + 782000 785822 . 1 3823 0 -chrXVI 782000 787659 Fusion_TU_465_tx_4 1 + 782000 787659 . 1 5660 0 -chrXVI 782237 785822 Fusion_TU_465_tx_2 1 + 782237 785822 . 1 3586 0 -chrXVI 782401 785822 Fusion_TU_465_tx_3 1 + 782401 785822 . 1 3422 0 -chrXVI 797523 798991 Fusion_TU_432_tx_1 3 + 797523 798991 . 1 1469 0 -chrXVI 850658 855841 Fusion_TU_447_tx_1 1 - 850658 855841 . 1 5184 0 -chrXVI 850721 856122 Fusion_TU_447_tx_2 1 - 850721 856122 . 1 5402 0 -chrXVI 886300 888729 Fusion_TU_448_tx_1 10 - 886300 888729 . 1 2430 0 -chrXVI 886300 888729 Fusion_TU_448_tx_2 1 - 886300 888729 . 2 1356,265 0,2165 -chrXVI 935939 939779 Fusion_TU_449_tx_1 1 - 935939 939779 . 2 1156,264 0,3577 diff --git a/results/2022-1201/files_features/SGD_genome-current-release/README.html b/results/2022-1201/files_features/SGD_genome-current-release/README.html deleted file mode 100755 index 2115241..0000000 --- a/results/2022-1201/files_features/SGD_genome-current-release/README.html +++ /dev/null @@ -1 +0,0 @@ -This directory contains compressed data files relevant to the current and archived versions of the S. cerevisiae strain S288C reference genome sequence and annotation. All versions contain a single FASTA file of chromosome sequences, and most versions since 2004 contain both a GAF and a GFF3 file. diff --git a/results/2022-1201/files_features/SGD_genome-current-release/genome_releases.README b/results/2022-1201/files_features/SGD_genome-current-release/genome_releases.README deleted file mode 100755 index c377772..0000000 --- a/results/2022-1201/files_features/SGD_genome-current-release/genome_releases.README +++ /dev/null @@ -1,12572 +0,0 @@ - - - - - - - JS Bin - - - - - - - -
-
-
- {# put announcements here #} - -
-
- About - Blog - Download - Explore - Help - YeastMine - -
-
-
-
- - - -
-
- -
-
-
- -
- -
-
- - - - - - - - - - diff --git a/results/2022-1201/files_features/SGD_other-features/README.html b/results/2022-1201/files_features/SGD_other-features/README.html deleted file mode 100755 index 7779928..0000000 --- a/results/2022-1201/files_features/SGD_other-features/README.html +++ /dev/null @@ -1 +0,0 @@ -This directory contains compressed data files relevant to the DNA sequences of the following feature types in S. cerevisiae strain S288C: ARS, CEN, LTRs, transposons, telomeric regions, telomeric repeats, telomeric X element core sequences, telomeric X element combinatorial repeats, and telomeric Y' elements. diff --git a/results/2022-1201/files_features/SGD_other-features/other_features.README b/results/2022-1201/files_features/SGD_other-features/other_features.README deleted file mode 100755 index 70757fc..0000000 --- a/results/2022-1201/files_features/SGD_other-features/other_features.README +++ /dev/null @@ -1,21 +0,0 @@ -This directory contains two files, both of which are compressed: - -other_features_genomic.fasta.gz --------------------------------- -Contains DNA sequences of the following feature types in S. cerevisiae -strain S288C: ARS, CEN, LTRs, transposons, telomeric regions, telomeric -repeats, telomeric X element core sequences, telomeric X element -combinatorial repeats, and telomeric Y' elements. - -other_features_genomic_1000.fasta.gz ------------------------------------- -Contains the genomic sequence for the above features plus 1000 bp -upstream and 1000 bp downstream. - -archive/ -------- -This directory contains previous versions of the files described above. - -These files are updated when there is a change to the sequence or -annotation of the S. cerevisiae reference genome. - diff --git a/results/2022-1201/files_features/Steinmetz-et-al/GSE95556_Sc.cerevisiae.feature.anno_Steinmetz_2013.gtf b/results/2022-1201/files_features/Steinmetz-et-al/GSE95556_Sc.cerevisiae.feature.anno_Steinmetz_2013.gtf deleted file mode 100644 index 7881774..0000000 --- a/results/2022-1201/files_features/Steinmetz-et-al/GSE95556_Sc.cerevisiae.feature.anno_Steinmetz_2013.gtf +++ /dev/null @@ -1,6030 +0,0 @@ -chrI Steinmetz_2013 transcript 7013 9049 . - . gene_id "ST00001"; transcript_id "YAL067C"; -chrI Steinmetz_2013 transcript 22363 23633 . - . gene_id "ST00002"; transcript_id "YAL063C-A"; -chrI Steinmetz_2013 transcript 28978 29742 . - . gene_id "ST00003"; transcript_id "XUT_1R-16"; -chrI Steinmetz_2013 transcript 31414 32968 . - . gene_id "ST00004"; transcript_id "SUT434"; -chrI Steinmetz_2013 transcript 31695 34358 . - . gene_id "ST00005"; transcript_id "XUT_1R-18"; -chrI Steinmetz_2013 transcript 32939 34358 . - . gene_id "ST00006"; transcript_id "SUT435"; -chrI Steinmetz_2013 transcript 35839 36359 . - . gene_id "ST00007"; transcript_id "CUT439"; -chrI Steinmetz_2013 transcript 42718 45073 . - . gene_id "ST00008"; transcript_id "YAL054C"; -chrI Steinmetz_2013 transcript 51719 52661 . - . gene_id "ST00009"; transcript_id "YAL049C"; -chrI Steinmetz_2013 transcript 54934 56886 . - . gene_id "ST00010"; transcript_id "YAL047C"; -chrI Steinmetz_2013 transcript 56907 57415 . - . gene_id "ST00011"; transcript_id "YAL046C"; -chrI Steinmetz_2013 transcript 57868 58471 . - . gene_id "ST00012"; transcript_id "YAL044C"; -chrI Steinmetz_2013 transcript 58619 61074 . - . gene_id "ST00013"; transcript_id "YAL043C"; -chrI Steinmetz_2013 transcript 65601 67841 . - . gene_id "ST00014"; transcript_id "YAL040C"; -chrI Steinmetz_2013 transcript 68647 69581 . - . gene_id "ST00015"; transcript_id "YAL039C"; -chrI Steinmetz_2013 transcript 73371 73710 . - . gene_id "ST00016"; transcript_id "YAL037C-A"; -chrI Steinmetz_2013 transcript 73642 74559 . - . gene_id "ST00017"; transcript_id "XUT_1R-40"; -chrI Steinmetz_2013 transcript 75014 76184 . - . gene_id "ST00018"; transcript_id "YAL036C"; -chrI Steinmetz_2013 transcript 80610 82586 . - . gene_id "ST00019"; transcript_id "YAL034C"; -chrI Steinmetz_2013 transcript 83216 84494 . - . gene_id "ST00020"; transcript_id "YAL032C"; -chrI Steinmetz_2013 transcript 84584 87031 . - . gene_id "ST00021"; transcript_id "YAL031C"; -chrI Steinmetz_2013 transcript 87794 92522 . - . gene_id "ST00022"; transcript_id "YAL029C"; -chrI Steinmetz_2013 transcript 100022 101168 . - . gene_id "ST00023"; transcript_id "YAL025C"; -chrI Steinmetz_2013 transcript 106157 108639 . - . gene_id "ST00024"; transcript_id "YAL023C"; -chrI Steinmetz_2013 transcript 108835 110446 . - . gene_id "ST00025"; transcript_id "YAL022C"; -chrI Steinmetz_2013 transcript 110616 113403 . - . gene_id "ST00026"; transcript_id "YAL021C"; -chrI Steinmetz_2013 transcript 113537 114637 . - . gene_id "ST00027"; transcript_id "YAL020C"; -chrI Steinmetz_2013 transcript 118426 119591 . - . gene_id "ST00028"; transcript_id "YAL018C"; -chrI Steinmetz_2013 transcript 126896 128102 . - . gene_id "ST00029"; transcript_id "YAL015C"; -chrI Steinmetz_2013 transcript 128118 129072 . - . gene_id "ST00030"; transcript_id "YAL014C"; -chrI Steinmetz_2013 transcript 134083 135688 . - . gene_id "ST00031"; transcript_id "YAL010C"; -chrI Steinmetz_2013 transcript 137552 138414 . - . gene_id "ST00032"; transcript_id "YAL007C"; -chrI Steinmetz_2013 transcript 139357 141493 . - . gene_id "ST00033"; transcript_id "YAL005C"; -chrI Steinmetz_2013 transcript 151598 152053 . - . gene_id "ST00034"; transcript_id "CUT441"; -chrI Steinmetz_2013 transcript 153989 154740 . - . gene_id "ST00035"; transcript_id "YAR002C-A"; -chrI Steinmetz_2013 transcript 156681 158682 . - . gene_id "ST00036"; transcript_id "YAR007C"; -chrI Steinmetz_2013 transcript 166564 169021 . - . gene_id "ST00037"; transcript_id "YAR014C"; -chrI Steinmetz_2013 transcript 170332 171711 . - . gene_id "ST00038"; transcript_id "YAR018C"; -chrI Steinmetz_2013 transcript 172149 175135 . - . gene_id "ST00039"; transcript_id "YAR019C"; -chrI Steinmetz_2013 transcript 179245 180697 . - . gene_id "ST00040"; transcript_id "YAR023C"; -chrI Steinmetz_2013 transcript 189561 190022 . - . gene_id "ST00041"; transcript_id "XUT_1R-91"; -chrI Steinmetz_2013 transcript 199930 200428 . - . gene_id "ST00042"; transcript_id "CUT442"; -chrI Steinmetz_2013 transcript 11313 12980 . + . gene_id "ST00043"; transcript_id "YAL064W-B"; -chrI Steinmetz_2013 transcript 27139 28131 . + . gene_id "ST00044"; transcript_id "XUT_1F-14"; -chrI Steinmetz_2013 transcript 30125 30823 . + . gene_id "ST00045"; transcript_id "XUT_1F-15"; -chrI Steinmetz_2013 transcript 30214 30911 . + . gene_id "ST00046"; transcript_id "CUT001"; -chrI Steinmetz_2013 transcript 31521 33015 . + . gene_id "ST00047"; transcript_id "YAL062W"; -chrI Steinmetz_2013 transcript 33359 34868 . + . gene_id "ST00048"; transcript_id "YAL061W"; -chrI Steinmetz_2013 transcript 35107 36387 . + . gene_id "ST00049"; transcript_id "YAL060W"; -chrI Steinmetz_2013 transcript 36507 37332 . + . gene_id "ST00050"; transcript_id "YAL059W"; -chrI Steinmetz_2013 transcript 37415 39163 . + . gene_id "ST00051"; transcript_id "YAL058W"; -chrI Steinmetz_2013 transcript 39208 41999 . + . gene_id "ST00052"; transcript_id "YAL056W"; -chrI Steinmetz_2013 transcript 42170 42797 . + . gene_id "ST00053"; transcript_id "YAL055W"; -chrI Steinmetz_2013 transcript 43438 45112 . + . gene_id "ST00054"; transcript_id "SUT002"; -chrI Steinmetz_2013 transcript 45759 48322 . + . gene_id "ST00055"; transcript_id "YAL053W"; -chrI Steinmetz_2013 transcript 48534 51787 . + . gene_id "ST00056"; transcript_id "YAL051W"; -chrI Steinmetz_2013 transcript 54262 55063 . + . gene_id "ST00057"; transcript_id "YAL047W-A"; -chrI Steinmetz_2013 transcript 57517 57961 . + . gene_id "ST00058"; transcript_id "YAL044W-A"; -chrI Steinmetz_2013 transcript 61300 62654 . + . gene_id "ST00059"; transcript_id "YAL042W"; -chrI Steinmetz_2013 transcript 62776 65463 . + . gene_id "ST00060"; transcript_id "YAL041W"; -chrI Steinmetz_2013 transcript 71759 73452 . + . gene_id "ST00061"; transcript_id "YAL038W"; -chrI Steinmetz_2013 transcript 73453 76400 . + . gene_id "ST00062"; transcript_id "YAL037W"; -chrI Steinmetz_2013 transcript 76401 79561 . + . gene_id "ST00063"; transcript_id "YAL035W"; -chrI Steinmetz_2013 transcript 79678 80670 . + . gene_id "ST00064"; transcript_id "YAL034W-A"; -chrI Steinmetz_2013 transcript 82701 83299 . + . gene_id "ST00065"; transcript_id "YAL033W"; -chrI Steinmetz_2013 transcript 87264 87862 . + . gene_id "ST00066"; transcript_id "YAL030W"; -chrI Steinmetz_2013 transcript 92836 94564 . + . gene_id "ST00067"; transcript_id "YAL028W"; -chrI Steinmetz_2013 transcript 94607 95573 . + . gene_id "ST00068"; transcript_id "YAL027W"; -chrI Steinmetz_2013 transcript 124782 126854 . + . gene_id "ST00069"; transcript_id "YAL016W"; -chrI Steinmetz_2013 transcript 129236 130588 . + . gene_id "ST00070"; transcript_id "YAL013W"; -chrI Steinmetz_2013 transcript 130744 132082 . + . gene_id "ST00071"; transcript_id "YAL012W"; -chrI Steinmetz_2013 transcript 132195 134173 . + . gene_id "ST00072"; transcript_id "YAL011W"; -chrI Steinmetz_2013 transcript 135854 136756 . + . gene_id "ST00073"; transcript_id "YAL009W"; -chrI Steinmetz_2013 transcript 136866 137637 . + . gene_id "ST00074"; transcript_id "YAL008W"; -chrI Steinmetz_2013 transcript 137751 138720 . + . gene_id "ST00075"; transcript_id "XUT_1F-60"; -chrI Steinmetz_2013 transcript 138578 138799 . + . gene_id "ST00076"; transcript_id "CUT002"; -chrI Steinmetz_2013 transcript 138797 142152 . + . gene_id "ST00077"; transcript_id "YAL004W"; -chrI Steinmetz_2013 transcript 142153 143381 . + . gene_id "ST00078"; transcript_id "YAL003W"; -chrI Steinmetz_2013 transcript 143612 147587 . + . gene_id "ST00079"; transcript_id "YAL002W"; -chrI Steinmetz_2013 transcript 152215 153970 . + . gene_id "ST00080"; transcript_id "YAR002W"; -chrI Steinmetz_2013 transcript 154920 156780 . + . gene_id "ST00081"; transcript_id "YAR003W"; -chrI Steinmetz_2013 transcript 158864 159890 . + . gene_id "ST00082"; transcript_id "YAR008W"; -chrI Steinmetz_2013 transcript 169286 170390 . + . gene_id "ST00083"; transcript_id "YAR015W"; -chrI Steinmetz_2013 transcript 183671 184662 . + . gene_id "ST00084"; transcript_id "YAR027W"; -chrI Steinmetz_2013 transcript 184836 185794 . + . gene_id "ST00085"; transcript_id "YAR028W"; -chrI Steinmetz_2013 transcript 185918 186809 . + . gene_id "ST00086"; transcript_id "YAR029W"; -chrI Steinmetz_2013 transcript 188047 188904 . + . gene_id "ST00087"; transcript_id "YAR033W"; -chrI Steinmetz_2013 transcript 190149 192360 . + . gene_id "ST00088"; transcript_id "YAR035W"; -chrI Steinmetz_2013 transcript 192575 196333 . + . gene_id "ST00089"; transcript_id "YAR042W"; -chrI Steinmetz_2013 transcript 196651 197097 . + . gene_id "ST00090"; transcript_id "XUT_1F-89"; -chrI Steinmetz_2013 transcript 198736 199865 . + . gene_id "ST00091"; transcript_id "SUT004"; -chrX Steinmetz_2013 transcript 33727 36281 . - . gene_id "ST00092"; transcript_id "YJL212C"; -chrX Steinmetz_2013 transcript 40080 41241 . - . gene_id "ST00093"; transcript_id "YJL208C"; -chrX Steinmetz_2013 transcript 47572 50094 . - . gene_id "ST00094"; transcript_id "YJL206C"; -chrX Steinmetz_2013 transcript 50021 50452 . - . gene_id "ST00095"; transcript_id "YJL205C"; -chrX Steinmetz_2013 transcript 50557 53187 . - . gene_id "ST00096"; transcript_id "YJL204C"; -chrX Steinmetz_2013 transcript 56297 58836 . - . gene_id "ST00097"; transcript_id "YJL200C"; -chrX Steinmetz_2013 transcript 59630 60187 . - . gene_id "ST00098"; transcript_id "YJL199C"; -chrX Steinmetz_2013 transcript 67715 68805 . - . gene_id "ST00099"; transcript_id "YJL196C"; -chrX Steinmetz_2013 transcript 72619 73420 . - . gene_id "ST00100"; transcript_id "YJL192C"; -chrX Steinmetz_2013 transcript 74759 75318 . - . gene_id "ST00101"; transcript_id "YJL190C"; -chrX Steinmetz_2013 transcript 76700 79355 . - . gene_id "ST00102"; transcript_id "YJL187C"; -chrX Steinmetz_2013 transcript 79336 79927 . - . gene_id "ST00103"; transcript_id "SUT618"; -chrX Steinmetz_2013 transcript 81906 82987 . - . gene_id "ST00104"; transcript_id "YJL185C"; -chrX Steinmetz_2013 transcript 87481 88576 . - . gene_id "ST00105"; transcript_id "YJL180C"; -chrX Steinmetz_2013 transcript 89159 90135 . - . gene_id "ST00106"; transcript_id "YJL178C"; -chrX Steinmetz_2013 transcript 91818 94593 . - . gene_id "ST00107"; transcript_id "YJL176C"; -chrX Steinmetz_2013 transcript 96084 96537 . - . gene_id "ST00108"; transcript_id "YJL173C"; -chrX Steinmetz_2013 transcript 96638 97502 . - . gene_id "ST00109"; transcript_id "XUT_10R-29"; -chrX Steinmetz_2013 transcript 99534 100926 . - . gene_id "ST00110"; transcript_id "YJL171C"; -chrX Steinmetz_2013 transcript 101123 101887 . - . gene_id "ST00111"; transcript_id "YJL170C"; -chrX Steinmetz_2013 transcript 102016 104521 . - . gene_id "ST00112"; transcript_id "YJL168C"; -chrX Steinmetz_2013 transcript 106866 109604 . - . gene_id "ST00113"; transcript_id "YJL165C"; -chrX Steinmetz_2013 transcript 109875 111378 . - . gene_id "ST00114"; transcript_id "YJL164C"; -chrX Steinmetz_2013 transcript 111619 113413 . - . gene_id "ST00115"; transcript_id "YJL163C"; -chrX Steinmetz_2013 transcript 113765 115678 . - . gene_id "ST00116"; transcript_id "YJL162C"; -chrX Steinmetz_2013 transcript 116634 117117 . - . gene_id "ST00117"; transcript_id "SUT621"; -chrX Steinmetz_2013 transcript 117884 118858 . - . gene_id "ST00118"; transcript_id "YJL160C"; -chrX Steinmetz_2013 transcript 122086 122985 . - . gene_id "ST00119"; transcript_id "YJL158C"; -chrX Steinmetz_2013 transcript 126463 128975 . - . gene_id "ST00120"; transcript_id "YJL156C"; -chrX Steinmetz_2013 transcript 129127 130771 . - . gene_id "ST00121"; transcript_id "YJL155C"; -chrX Steinmetz_2013 transcript 131039 134020 . - . gene_id "ST00122"; transcript_id "YJL154C"; -chrX Steinmetz_2013 transcript 134187 135937 . - . gene_id "ST00123"; transcript_id "YJL153C"; -chrX Steinmetz_2013 transcript 136299 136806 . - . gene_id "ST00124"; transcript_id "YJL151C"; -chrX Steinmetz_2013 transcript 141189 142648 . - . gene_id "ST00125"; transcript_id "YJL147C"; -chrX Steinmetz_2013 transcript 142788 143011 . - . gene_id "ST00126"; transcript_id "CUT679"; -chrX Steinmetz_2013 transcript 144136 144905 . - . gene_id "ST00127"; transcript_id "XUT_10R-52"; -chrX Steinmetz_2013 transcript 144354 144923 . - . gene_id "ST00128"; transcript_id "SUT624"; -chrX Steinmetz_2013 transcript 151602 153082 . - . gene_id "ST00129"; transcript_id "YJL139C"; -chrX Steinmetz_2013 transcript 153314 154742 . - . gene_id "ST00130"; transcript_id "YJL138C"; -chrX Steinmetz_2013 transcript 154846 156210 . - . gene_id "ST00131"; transcript_id "YJL137C"; -chrX Steinmetz_2013 transcript 156422 157306 . - . gene_id "ST00132"; transcript_id "YJL136C"; -chrX Steinmetz_2013 transcript 159453 159862 . - . gene_id "ST00133"; transcript_id "YJL133C-A"; -chrX Steinmetz_2013 transcript 164197 165379 . - . gene_id "ST00134"; transcript_id "YJL131C"; -chrX Steinmetz_2013 transcript 173529 177593 . - . gene_id "ST00135"; transcript_id "YJL129C"; -chrX Steinmetz_2013 transcript 178052 180324 . - . gene_id "ST00136"; transcript_id "YJL128C"; -chrX Steinmetz_2013 transcript 181295 181808 . - . gene_id "ST00137"; transcript_id "YJL127C-B"; -chrX Steinmetz_2013 transcript 181823 184288 . - . gene_id "ST00138"; transcript_id "YJL127C"; -chrX Steinmetz_2013 transcript 185432 186718 . - . gene_id "ST00139"; transcript_id "YJL125C"; -chrX Steinmetz_2013 transcript 187016 187816 . - . gene_id "ST00140"; transcript_id "YJL124C"; -chrX Steinmetz_2013 transcript 187887 189448 . - . gene_id "ST00141"; transcript_id "YJL123C"; -chrX Steinmetz_2013 transcript 190309 191130 . - . gene_id "ST00142"; transcript_id "YJL121C"; -chrX Steinmetz_2013 transcript 191150 192236 . - . gene_id "ST00143"; transcript_id "YJL119C"; -chrX Steinmetz_2013 transcript 193495 195072 . - . gene_id "ST00144"; transcript_id "YJL116C"; -chrX Steinmetz_2013 transcript 195022 195303 . - . gene_id "ST00145"; transcript_id "SUT625"; -chrX Steinmetz_2013 transcript 209793 211666 . - . gene_id "ST00146"; transcript_id "YJL110C"; -chrX Steinmetz_2013 transcript 224750 227074 . - . gene_id "ST00147"; transcript_id "XUT_10R-84"; -chrX Steinmetz_2013 transcript 226470 227098 . - . gene_id "ST00148"; transcript_id "SUT628"; -chrX Steinmetz_2013 transcript 228823 231076 . - . gene_id "ST00149"; transcript_id "YJL103C"; -chrX Steinmetz_2013 transcript 234177 236499 . - . gene_id "ST00150"; transcript_id "YJL101C"; -chrX Steinmetz_2013 transcript 238375 239131 . - . gene_id "ST00151"; transcript_id "SUT629"; -chrX Steinmetz_2013 transcript 251676 254487 . - . gene_id "ST00152"; transcript_id "YJL094C"; -chrX Steinmetz_2013 transcript 254601 256816 . - . gene_id "ST00153"; transcript_id "YJL093C"; -chrX Steinmetz_2013 transcript 260980 262560 . - . gene_id "ST00154"; transcript_id "YJL091C"; -chrX Steinmetz_2013 transcript 262674 265095 . - . gene_id "ST00155"; transcript_id "YJL090C"; -chrX Steinmetz_2013 transcript 274717 278115 . - . gene_id "ST00156"; transcript_id "YJL084C"; -chrX Steinmetz_2013 transcript 283654 285325 . - . gene_id "ST00157"; transcript_id "YJL081C"; -chrX Steinmetz_2013 transcript 285437 289443 . - . gene_id "ST00158"; transcript_id "YJL080C"; -chrX Steinmetz_2013 transcript 289691 290938 . - . gene_id "ST00159"; transcript_id "YJL079C"; -chrX Steinmetz_2013 transcript 291030 294054 . - . gene_id "ST00160"; transcript_id "YJL078C"; -chrX Steinmetz_2013 transcript 299058 302872 . - . gene_id "ST00161"; transcript_id "YJL074C"; -chrX Steinmetz_2013 transcript 304635 305899 . - . gene_id "ST00162"; transcript_id "YJL072C"; -chrX Steinmetz_2013 transcript 307889 310652 . - . gene_id "ST00163"; transcript_id "YJL070C"; -chrX Steinmetz_2013 transcript 310840 312722 . - . gene_id "ST00164"; transcript_id "YJL069C"; -chrX Steinmetz_2013 transcript 312913 313936 . - . gene_id "ST00165"; transcript_id "YJL068C"; -chrX Steinmetz_2013 transcript 313919 314910 . - . gene_id "ST00166"; transcript_id "YJL066C"; -chrX Steinmetz_2013 transcript 314919 315591 . - . gene_id "ST00167"; transcript_id "YJL065C"; -chrX Steinmetz_2013 transcript 315680 316498 . - . gene_id "ST00168"; transcript_id "YJL063C"; -chrX Steinmetz_2013 transcript 319137 319770 . - . gene_id "ST00169"; transcript_id "XUT_10R-116"; -chrX Steinmetz_2013 transcript 319340 319777 . - . gene_id "ST00170"; transcript_id "SUT631"; -chrX Steinmetz_2013 transcript 322118 323137 . - . gene_id "ST00171"; transcript_id "XUT_10R-117"; -chrX Steinmetz_2013 transcript 324886 325214 . - . gene_id "ST00172"; transcript_id "XUT_10R-119"; -chrX Steinmetz_2013 transcript 326179 327922 . - . gene_id "ST00173"; transcript_id "YJL058C"; -chrX Steinmetz_2013 transcript 328036 330179 . - . gene_id "ST00174"; transcript_id "YJL057C"; -chrX Steinmetz_2013 transcript 330320 333174 . - . gene_id "ST00175"; transcript_id "YJL056C"; -chrX Steinmetz_2013 transcript 337092 337753 . - . gene_id "ST00176"; transcript_id "CUT689"; -chrX Steinmetz_2013 transcript 339604 342057 . - . gene_id "ST00177"; transcript_id "SUT632"; -chrX Steinmetz_2013 transcript 347301 348657 . - . gene_id "ST00178"; transcript_id "YJL048C"; -chrX Steinmetz_2013 transcript 348640 349232 . - . gene_id "ST00179"; transcript_id "YJL047C-A"; -chrX Steinmetz_2013 transcript 349501 352212 . - . gene_id "ST00180"; transcript_id "YJL047C"; -chrX Steinmetz_2013 transcript 355883 357864 . - . gene_id "ST00181"; transcript_id "SUT633"; -chrX Steinmetz_2013 transcript 358039 359725 . - . gene_id "ST00182"; transcript_id "YJL044C"; -chrX Steinmetz_2013 transcript 360008 361033 . - . gene_id "ST00183"; transcript_id "XUT_10R-136"; -chrX Steinmetz_2013 transcript 375100 375810 . - . gene_id "ST00184"; transcript_id "YJL038C"; -chrX Steinmetz_2013 transcript 380155 381054 . - . gene_id "ST00185"; transcript_id "YJL035C"; -chrX Steinmetz_2013 transcript 386257 387442 . - . gene_id "ST00186"; transcript_id "YJL031C"; -chrX Steinmetz_2013 transcript 388285 390914 . - . gene_id "ST00187"; transcript_id "YJL029C"; -chrX Steinmetz_2013 transcript 391772 392317 . - . gene_id "ST00188"; transcript_id "YJL027C"; -chrX Steinmetz_2013 transcript 395741 396634 . - . gene_id "ST00189"; transcript_id "YJL024C"; -chrX Steinmetz_2013 transcript 397198 398415 . - . gene_id "ST00190"; transcript_id "YJL023C"; -chrX Steinmetz_2013 transcript 398788 402486 . - . gene_id "ST00191"; transcript_id "YJL020C"; -chrX Steinmetz_2013 transcript 403398 405133 . - . gene_id "ST00192"; transcript_id "XUT_10R-155"; -chrX Steinmetz_2013 transcript 404185 405154 . - . gene_id "ST00193"; transcript_id "SUT634"; -chrX Steinmetz_2013 transcript 411163 413419 . - . gene_id "ST00194"; transcript_id "YJL012C"; -chrX Steinmetz_2013 transcript 414121 414810 . - . gene_id "ST00195"; transcript_id "YJL011C"; -chrX Steinmetz_2013 transcript 416988 417269 . - . gene_id "ST00196"; transcript_id "XUT_10R-165"; -chrX Steinmetz_2013 transcript 417515 419599 . - . gene_id "ST00197"; transcript_id "YJL010C"; -chrX Steinmetz_2013 transcript 419802 421706 . - . gene_id "ST00198"; transcript_id "YJL008C"; -chrX Steinmetz_2013 transcript 423085 424168 . - . gene_id "ST00199"; transcript_id "YJL006C"; -chrX Steinmetz_2013 transcript 431319 432229 . - . gene_id "ST00200"; transcript_id "YJL004C"; -chrX Steinmetz_2013 transcript 433110 434707 . - . gene_id "ST00201"; transcript_id "YJL002C"; -chrX Steinmetz_2013 transcript 440907 442564 . - . gene_id "ST00202"; transcript_id "YJR003C"; -chrX Steinmetz_2013 transcript 442677 444896 . - . gene_id "ST00203"; transcript_id "YJR004C"; -chrX Steinmetz_2013 transcript 451977 453478 . - . gene_id "ST00204"; transcript_id "SUT637"; -chrX Steinmetz_2013 transcript 453545 454729 . - . gene_id "ST00205"; transcript_id "YJR009C"; -chrX Steinmetz_2013 transcript 457845 458382 . - . gene_id "ST00206"; transcript_id "YJR010C-A"; -chrX Steinmetz_2013 transcript 458555 459486 . - . gene_id "ST00207"; transcript_id "YJR011C"; -chrX Steinmetz_2013 transcript 461325 461568 . - . gene_id "ST00208"; transcript_id "CUT692"; -chrX Steinmetz_2013 transcript 464400 466223 . - . gene_id "ST00209"; transcript_id "YJR016C"; -chrX Steinmetz_2013 transcript 466279 467055 . - . gene_id "ST00210"; transcript_id "YJR017C"; -chrX Steinmetz_2013 transcript 467157 468295 . - . gene_id "ST00211"; transcript_id "YJR019C"; -chrX Steinmetz_2013 transcript 468457 469614 . - . gene_id "ST00212"; transcript_id "YJR021C"; -chrX Steinmetz_2013 transcript 470986 471701 . - . gene_id "ST00213"; transcript_id "YJR025C"; -chrX Steinmetz_2013 transcript 472095 472452 . - . gene_id "ST00214"; transcript_id "XUT_10R-186"; -chrX Steinmetz_2013 transcript 486469 490911 . - . gene_id "ST00215"; transcript_id "YJR031C"; -chrX Steinmetz_2013 transcript 496963 497182 . - . gene_id "ST00216"; transcript_id "SUT639"; -chrX Steinmetz_2013 transcript 500604 503545 . - . gene_id "ST00217"; transcript_id "YJR036C"; -chrX Steinmetz_2013 transcript 510065 513836 . - . gene_id "ST00218"; transcript_id "YJR041C"; -chrX Steinmetz_2013 transcript 516332 517581 . - . gene_id "ST00219"; transcript_id "YJR043C"; -chrX Steinmetz_2013 transcript 518586 519277 . - . gene_id "ST00220"; transcript_id "YJR044C"; -chrX Steinmetz_2013 transcript 519419 521741 . - . gene_id "ST00221"; transcript_id "YJR045C"; -chrX Steinmetz_2013 transcript 524798 525428 . - . gene_id "ST00222"; transcript_id "YJR047C"; -chrX Steinmetz_2013 transcript 524165 524538 . - . gene_id "ST00223"; transcript_id "SUT640"; -chrX Steinmetz_2013 transcript 524165 524515 . - . gene_id "ST00224"; transcript_id "XUT_10R-197"; -chrX Steinmetz_2013 transcript 526700 528494 . - . gene_id "ST00225"; transcript_id "YJR049C"; -chrX Steinmetz_2013 transcript 529168 529657 . - . gene_id "ST00226"; transcript_id "CUT694"; -chrX Steinmetz_2013 transcript 539541 540492 . - . gene_id "ST00227"; transcript_id "SUT642"; -chrX Steinmetz_2013 transcript 541652 542668 . - . gene_id "ST00228"; transcript_id "YJR056C"; -chrX Steinmetz_2013 transcript 544686 545198 . - . gene_id "ST00229"; transcript_id "YJR058C"; -chrX Steinmetz_2013 transcript 552965 554866 . - . gene_id "ST00230"; transcript_id "YJR062C"; -chrX Steinmetz_2013 transcript 557661 559184 . - . gene_id "ST00231"; transcript_id "YJR065C"; -chrX Steinmetz_2013 transcript 566899 567450 . - . gene_id "ST00232"; transcript_id "YJR067C"; -chrX Steinmetz_2013 transcript 568665 569432 . - . gene_id "ST00233"; transcript_id "YJR069C"; -chrX Steinmetz_2013 transcript 569491 570621 . - . gene_id "ST00234"; transcript_id "YJR070C"; -chrX Steinmetz_2013 transcript 570897 572172 . - . gene_id "ST00235"; transcript_id "YJR072C"; -chrX Steinmetz_2013 transcript 572232 572959 . - . gene_id "ST00236"; transcript_id "YJR073C"; -chrX Steinmetz_2013 transcript 575220 576678 . - . gene_id "ST00237"; transcript_id "YJR076C"; -chrX Steinmetz_2013 transcript 577104 578215 . - . gene_id "ST00238"; transcript_id "YJR077C"; -chrX Steinmetz_2013 transcript 580307 581637 . - . gene_id "ST00239"; transcript_id "YJR080C"; -chrX Steinmetz_2013 transcript 581717 582362 . - . gene_id "ST00240"; transcript_id "YJR082C"; -chrX Steinmetz_2013 transcript 582522 583556 . - . gene_id "ST00241"; transcript_id "YJR083C"; -chrX Steinmetz_2013 transcript 585025 585481 . - . gene_id "ST00242"; transcript_id "YJR085C"; -chrX Steinmetz_2013 transcript 586364 587423 . - . gene_id "ST00243"; transcript_id "YJR088C"; -chrX Steinmetz_2013 transcript 594778 598406 . - . gene_id "ST00244"; transcript_id "YJR091C"; -chrX Steinmetz_2013 transcript 603114 604261 . - . gene_id "ST00245"; transcript_id "YJR093C"; -chrX Steinmetz_2013 transcript 604406 605813 . - . gene_id "ST00246"; transcript_id "YJR094C"; -chrX Steinmetz_2013 transcript 605915 607171 . - . gene_id "ST00247"; transcript_id "SUT643"; -chrX Steinmetz_2013 transcript 609476 610404 . - . gene_id "ST00248"; transcript_id "XUT_10R-234"; -chrX Steinmetz_2013 transcript 611015 612084 . - . gene_id "ST00249"; transcript_id "SUT644"; -chrX Steinmetz_2013 transcript 613119 615187 . - . gene_id "ST00250"; transcript_id "YJR098C"; -chrX Steinmetz_2013 transcript 616279 617380 . - . gene_id "ST00251"; transcript_id "YJR100C"; -chrX Steinmetz_2013 transcript 619036 619774 . - . gene_id "ST00252"; transcript_id "YJR102C"; -chrX Steinmetz_2013 transcript 622479 623057 . - . gene_id "ST00253"; transcript_id "YJR104C"; -chrX Steinmetz_2013 transcript 626960 628718 . - . gene_id "ST00254"; transcript_id "SUT646"; -chrX Steinmetz_2013 transcript 629488 633004 . - . gene_id "ST00255"; transcript_id "YJR109C"; -chrX Steinmetz_2013 transcript 638159 639030 . - . gene_id "ST00256"; transcript_id "YJR113C"; -chrX Steinmetz_2013 transcript 643388 644139 . - . gene_id "ST00257"; transcript_id "YJR118C"; -chrX Steinmetz_2013 transcript 644223 646499 . - . gene_id "ST00258"; transcript_id "YJR119C"; -chrX Steinmetz_2013 transcript 650786 651263 . - . gene_id "ST00259"; transcript_id "CUT699"; -chrX Steinmetz_2013 transcript 652776 654280 . - . gene_id "ST00260"; transcript_id "YJR124C"; -chrX Steinmetz_2013 transcript 654646 656023 . - . gene_id "ST00261"; transcript_id "YJR125C"; -chrX Steinmetz_2013 transcript 656177 658698 . - . gene_id "ST00262"; transcript_id "YJR126C"; -chrX Steinmetz_2013 transcript 663960 665065 . - . gene_id "ST00263"; transcript_id "YJR129C"; -chrX Steinmetz_2013 transcript 665064 667165 . - . gene_id "ST00264"; transcript_id "YJR130C"; -chrX Steinmetz_2013 transcript 673632 675893 . - . gene_id "ST00265"; transcript_id "YJR134C"; -chrX Steinmetz_2013 transcript 675912 676830 . - . gene_id "ST00266"; transcript_id "YJR135C"; -chrX Steinmetz_2013 transcript 677355 678724 . - . gene_id "ST00267"; transcript_id "YJR136C"; -chrX Steinmetz_2013 transcript 689375 690588 . - . gene_id "ST00268"; transcript_id "YJR139C"; -chrX Steinmetz_2013 transcript 698197 700673 . - . gene_id "ST00269"; transcript_id "YJR143C"; -chrX Steinmetz_2013 transcript 701937 703088 . - . gene_id "ST00270"; transcript_id "YJR145C"; -chrX Steinmetz_2013 transcript 703400 705244 . - . gene_id "ST00271"; transcript_id "SUT650"; -chrX Steinmetz_2013 transcript 703550 705187 . - . gene_id "ST00272"; transcript_id "XUT_10R-276"; -chrX Steinmetz_2013 transcript 708704 709744 . - . gene_id "ST00273"; transcript_id "YJR150C"; -chrX Steinmetz_2013 transcript 718428 719254 . - . gene_id "ST00274"; transcript_id "XUT_10R-284"; -chrX Steinmetz_2013 transcript 721309 724200 . - . gene_id "ST00275"; transcript_id "XUT_10R-287"; -chrX Steinmetz_2013 transcript 722376 724200 . - . gene_id "ST00276"; transcript_id "SUT651"; -chrX Steinmetz_2013 transcript 724558 725347 . - . gene_id "ST00277"; transcript_id "XUT_10R-288"; -chrX Steinmetz_2013 transcript 21920 22709 . + . gene_id "ST00278"; transcript_id "YJL218W"; -chrX Steinmetz_2013 transcript 23126 23812 . + . gene_id "ST00279"; transcript_id "YJL217W"; -chrX Steinmetz_2013 transcript 31815 33342 . + . gene_id "ST00280"; transcript_id "YJL213W"; -chrX Steinmetz_2013 transcript 33662 36373 . + . gene_id "ST00281"; transcript_id "SUT198"; -chrX Steinmetz_2013 transcript 36867 37797 . + . gene_id "ST00282"; transcript_id "YJL210W"; -chrX Steinmetz_2013 transcript 37939 40062 . + . gene_id "ST00283"; transcript_id "YJL209W"; -chrX Steinmetz_2013 transcript 50043 50625 . + . gene_id "ST00284"; transcript_id "SUT199"; -chrX Steinmetz_2013 transcript 53318 54288 . + . gene_id "ST00285"; transcript_id "YJL203W"; -chrX Steinmetz_2013 transcript 54354 56246 . + . gene_id "ST00286"; transcript_id "YJL201W"; -chrX Steinmetz_2013 transcript 60794 63579 . + . gene_id "ST00287"; transcript_id "YJL198W"; -chrX Steinmetz_2013 transcript 63765 67644 . + . gene_id "ST00288"; transcript_id "YJL197W"; -chrX Steinmetz_2013 transcript 69300 71012 . + . gene_id "ST00289"; transcript_id "YJL194W"; -chrX Steinmetz_2013 transcript 71360 72695 . + . gene_id "ST00290"; transcript_id "YJL193W"; -chrX Steinmetz_2013 transcript 73763 74716 . + . gene_id "ST00291"; transcript_id "YJL191W"; -chrX Steinmetz_2013 transcript 75907 76655 . + . gene_id "ST00292"; transcript_id "YJL189W"; -chrX Steinmetz_2013 transcript 80126 82033 . + . gene_id "ST00293"; transcript_id "YJL186W"; -chrX Steinmetz_2013 transcript 83407 83895 . + . gene_id "ST00294"; transcript_id "YJL184W"; -chrX Steinmetz_2013 transcript 84003 85425 . + . gene_id "ST00295"; transcript_id "YJL183W"; -chrX Steinmetz_2013 transcript 85638 87579 . + . gene_id "ST00296"; transcript_id "YJL181W"; -chrX Steinmetz_2013 transcript 88730 89249 . + . gene_id "ST00297"; transcript_id "YJL179W"; -chrX Steinmetz_2013 transcript 90765 91762 . + . gene_id "ST00298"; transcript_id "YJL177W"; -chrX Steinmetz_2013 transcript 91838 94976 . + . gene_id "ST00299"; transcript_id "YJL175W"; -chrX Steinmetz_2013 transcript 94983 96085 . + . gene_id "ST00300"; transcript_id "YJL174W"; -chrX Steinmetz_2013 transcript 96619 96915 . + . gene_id "ST00301"; transcript_id "XUT_10F-42"; -chrX Steinmetz_2013 transcript 97698 99612 . + . gene_id "ST00302"; transcript_id "YJL172W"; -chrX Steinmetz_2013 transcript 101105 101872 . + . gene_id "ST00303"; transcript_id "XUT_10F-44"; -chrX Steinmetz_2013 transcript 104958 106187 . + . gene_id "ST00304"; transcript_id "YJL167W"; -chrX Steinmetz_2013 transcript 106368 106887 . + . gene_id "ST00305"; transcript_id "YJL166W"; -chrX Steinmetz_2013 transcript 109800 110269 . + . gene_id "ST00306"; transcript_id "XUT_10F-48"; -chrX Steinmetz_2013 transcript 117226 117941 . + . gene_id "ST00307"; transcript_id "YJL161W"; -chrX Steinmetz_2013 transcript 117880 118956 . + . gene_id "ST00308"; transcript_id "CUT199"; -chrX Steinmetz_2013 transcript 120395 122004 . + . gene_id "ST00309"; transcript_id "YJL159W"; -chrX Steinmetz_2013 transcript 123800 126018 . + . gene_id "ST00310"; transcript_id "SUT204"; -chrX Steinmetz_2013 transcript 135160 136905 . + . gene_id "ST00311"; transcript_id "YJL152W"; -chrX Steinmetz_2013 transcript 140380 141342 . + . gene_id "ST00312"; transcript_id "YJL148W"; -chrX Steinmetz_2013 transcript 143166 144938 . + . gene_id "ST00313"; transcript_id "YJL146W"; -chrX Steinmetz_2013 transcript 145125 146127 . + . gene_id "ST00314"; transcript_id "YJL145W"; -chrX Steinmetz_2013 transcript 146326 146905 . + . gene_id "ST00315"; transcript_id "YJL144W"; -chrX Steinmetz_2013 transcript 147055 147877 . + . gene_id "ST00316"; transcript_id "YJL143W"; -chrX Steinmetz_2013 transcript 150867 151676 . + . gene_id "ST00317"; transcript_id "YJL140W"; -chrX Steinmetz_2013 transcript 155044 155726 . + . gene_id "ST00318"; transcript_id "CUT204"; -chrX Steinmetz_2013 transcript 160542 161703 . + . gene_id "ST00319"; transcript_id "YJL133W"; -chrX Steinmetz_2013 transcript 161892 164304 . + . gene_id "ST00320"; transcript_id "YJL132W"; -chrX Steinmetz_2013 transcript 172889 173515 . + . gene_id "ST00321"; transcript_id "XUT_10F-82"; -chrX Steinmetz_2013 transcript 180508 180829 . + . gene_id "ST00322"; transcript_id "SUT205"; -chrX Steinmetz_2013 transcript 180532 180997 . + . gene_id "ST00323"; transcript_id "XUT_10F-86"; -chrX Steinmetz_2013 transcript 184494 185545 . + . gene_id "ST00324"; transcript_id "YJL126W"; -chrX Steinmetz_2013 transcript 189699 190398 . + . gene_id "ST00325"; transcript_id "YJL122W"; -chrX Steinmetz_2013 transcript 191635 192466 . + . gene_id "ST00326"; transcript_id "YJL118W"; -chrX Steinmetz_2013 transcript 192481 193487 . + . gene_id "ST00327"; transcript_id "YJL117W"; -chrX Steinmetz_2013 transcript 193857 195134 . + . gene_id "ST00328"; transcript_id "SUT206"; -chrX Steinmetz_2013 transcript 196211 197228 . + . gene_id "ST00329"; transcript_id "YJL115W"; -chrX Steinmetz_2013 transcript 205280 207600 . + . gene_id "ST00330"; transcript_id "YJL112W"; -chrX Steinmetz_2013 transcript 207826 209700 . + . gene_id "ST00331"; transcript_id "YJL111W"; -chrX Steinmetz_2013 transcript 217532 219045 . + . gene_id "ST00332"; transcript_id "SUT207"; -chrX Steinmetz_2013 transcript 220845 223466 . + . gene_id "ST00333"; transcript_id "YJL106W"; -chrX Steinmetz_2013 transcript 227305 227944 . + . gene_id "ST00334"; transcript_id "YJL104W"; -chrX Steinmetz_2013 transcript 231259 233875 . + . gene_id "ST00335"; transcript_id "YJL102W"; -chrX Steinmetz_2013 transcript 236920 239167 . + . gene_id "ST00336"; transcript_id "YJL100W"; -chrX Steinmetz_2013 transcript 239326 241995 . + . gene_id "ST00337"; transcript_id "YJL099W"; -chrX Steinmetz_2013 transcript 245530 246298 . + . gene_id "ST00338"; transcript_id "YJL097W"; -chrX Steinmetz_2013 transcript 246449 247046 . + . gene_id "ST00339"; transcript_id "YJL096W"; -chrX Steinmetz_2013 transcript 257209 261050 . + . gene_id "ST00340"; transcript_id "YJL092W"; -chrX Steinmetz_2013 transcript 268777 269895 . + . gene_id "ST00341"; transcript_id "YJL088W"; -chrX Steinmetz_2013 transcript 272738 274809 . + . gene_id "ST00342"; transcript_id "YJL085W"; -chrX Steinmetz_2013 transcript 278786 281032 . + . gene_id "ST00343"; transcript_id "YJL083W"; -chrX Steinmetz_2013 transcript 281067 283598 . + . gene_id "ST00344"; transcript_id "YJL082W"; -chrX Steinmetz_2013 transcript 289647 291080 . + . gene_id "ST00345"; transcript_id "SUT209"; -chrX Steinmetz_2013 transcript 291996 294320 . + . gene_id "ST00346"; transcript_id "YJL077W-B"; -chrX Steinmetz_2013 transcript 294668 295047 . + . gene_id "ST00347"; transcript_id "YJL077W-A"; -chrX Steinmetz_2013 transcript 295180 298985 . + . gene_id "ST00348"; transcript_id "YJL076W"; -chrX Steinmetz_2013 transcript 303061 305205 . + . gene_id "ST00349"; transcript_id "YJL073W"; -chrX Steinmetz_2013 transcript 306087 307962 . + . gene_id "ST00350"; transcript_id "YJL071W"; -chrX Steinmetz_2013 transcript 316694 317157 . + . gene_id "ST00351"; transcript_id "YJL062W-A"; -chrX Steinmetz_2013 transcript 317259 319869 . + . gene_id "ST00352"; transcript_id "YJL062W"; -chrX Steinmetz_2013 transcript 319976 322282 . + . gene_id "ST00353"; transcript_id "YJL061W"; -chrX Steinmetz_2013 transcript 323369 324817 . + . gene_id "ST00354"; transcript_id "YJL060W"; -chrX Steinmetz_2013 transcript 324929 326274 . + . gene_id "ST00355"; transcript_id "YJL059W"; -chrX Steinmetz_2013 transcript 327321 328119 . + . gene_id "ST00356"; transcript_id "XUT_10F-149"; -chrX Steinmetz_2013 transcript 329777 330307 . + . gene_id "ST00357"; transcript_id "XUT_10F-151"; -chrX Steinmetz_2013 transcript 333340 334155 . + . gene_id "ST00358"; transcript_id "YJL055W"; -chrX Steinmetz_2013 transcript 334257 335780 . + . gene_id "ST00359"; transcript_id "YJL054W"; -chrX Steinmetz_2013 transcript 335850 337166 . + . gene_id "ST00360"; transcript_id "YJL053W"; -chrX Steinmetz_2013 transcript 338197 339398 . + . gene_id "ST00361"; transcript_id "YJL052W"; -chrX Steinmetz_2013 transcript 339712 342345 . + . gene_id "ST00362"; transcript_id "YJL051W"; -chrX Steinmetz_2013 transcript 342474 345802 . + . gene_id "ST00363"; transcript_id "YJL050W"; -chrX Steinmetz_2013 transcript 345950 347402 . + . gene_id "ST00364"; transcript_id "YJL049W"; -chrX Steinmetz_2013 transcript 348258 348772 . + . gene_id "ST00365"; transcript_id "XUT_10F-158"; -chrX Steinmetz_2013 transcript 352354 353682 . + . gene_id "ST00366"; transcript_id "YJL046W"; -chrX Steinmetz_2013 transcript 355995 358139 . + . gene_id "ST00367"; transcript_id "YJL045W"; -chrX Steinmetz_2013 transcript 358352 361217 . + . gene_id "ST00368"; transcript_id "YJL043W"; -chrX Steinmetz_2013 transcript 361141 365600 . + . gene_id "ST00369"; transcript_id "YJL042W"; -chrX Steinmetz_2013 transcript 365726 368502 . + . gene_id "ST00370"; transcript_id "YJL041W"; -chrX Steinmetz_2013 transcript 375152 375970 . + . gene_id "ST00371"; transcript_id "XUT_10F-170"; -chrX Steinmetz_2013 transcript 375152 375904 . + . gene_id "ST00372"; transcript_id "SUT210"; -chrX Steinmetz_2013 transcript 378706 380250 . + . gene_id "ST00373"; transcript_id "YJL036W"; -chrX Steinmetz_2013 transcript 381289 383582 . + . gene_id "ST00374"; transcript_id "YJL034W"; -chrX Steinmetz_2013 transcript 383811 386230 . + . gene_id "ST00375"; transcript_id "YJL033W"; -chrX Steinmetz_2013 transcript 387613 388386 . + . gene_id "ST00376"; transcript_id "YJL030W"; -chrX Steinmetz_2013 transcript 392361 393744 . + . gene_id "ST00377"; transcript_id "YJL026W"; -chrX Steinmetz_2013 transcript 393887 395654 . + . gene_id "ST00378"; transcript_id "YJL025W"; -chrX Steinmetz_2013 transcript 398010 398892 . + . gene_id "ST00379"; transcript_id "YJL022W"; -chrX Steinmetz_2013 transcript 402794 405274 . + . gene_id "ST00380"; transcript_id "YJL019W"; -chrX Steinmetz_2013 transcript 405320 407389 . + . gene_id "ST00381"; transcript_id "YJL016W"; -chrX Steinmetz_2013 transcript 407533 409283 . + . gene_id "ST00382"; transcript_id "YJL014W"; -chrX Steinmetz_2013 transcript 415140 415428 . + . gene_id "ST00383"; transcript_id "SUT211"; -chrX Steinmetz_2013 transcript 432597 433192 . + . gene_id "ST00384"; transcript_id "YJL003W"; -chrX Steinmetz_2013 transcript 435126 436040 . + . gene_id "ST00385"; transcript_id "YJL001W"; -chrX Steinmetz_2013 transcript 436730 438695 . + . gene_id "ST00386"; transcript_id "YJR001W"; -chrX Steinmetz_2013 transcript 438835 441006 . + . gene_id "ST00387"; transcript_id "YJR002W"; -chrX Steinmetz_2013 transcript 445881 448316 . + . gene_id "ST00388"; transcript_id "YJR005W"; -chrX Steinmetz_2013 transcript 449194 450736 . + . gene_id "ST00389"; transcript_id "YJR006W"; -chrX Steinmetz_2013 transcript 450924 452094 . + . gene_id "ST00390"; transcript_id "YJR007W"; -chrX Steinmetz_2013 transcript 452319 453514 . + . gene_id "ST00391"; transcript_id "YJR008W"; -chrX Steinmetz_2013 transcript 456155 457903 . + . gene_id "ST00392"; transcript_id "YJR010W"; -chrX Steinmetz_2013 transcript 457927 458628 . + . gene_id "ST00393"; transcript_id "SUT213"; -chrX Steinmetz_2013 transcript 459397 459845 . + . gene_id "ST00394"; transcript_id "SUT214"; -chrX Steinmetz_2013 transcript 460342 461687 . + . gene_id "ST00395"; transcript_id "YJR013W"; -chrX Steinmetz_2013 transcript 461777 462525 . + . gene_id "ST00396"; transcript_id "YJR014W"; -chrX Steinmetz_2013 transcript 462705 464387 . + . gene_id "ST00397"; transcript_id "YJR015W"; -chrX Steinmetz_2013 transcript 466576 467274 . + . gene_id "ST00398"; transcript_id "YJR018W"; -chrX Steinmetz_2013 transcript 467470 468644 . + . gene_id "ST00399"; transcript_id "YJR020W"; -chrX Steinmetz_2013 transcript 491058 492383 . + . gene_id "ST00400"; transcript_id "YJR032W"; -chrX Steinmetz_2013 transcript 496580 497083 . + . gene_id "ST00401"; transcript_id "YJR034W"; -chrX Steinmetz_2013 transcript 497320 500761 . + . gene_id "ST00402"; transcript_id "YJR035W"; -chrX Steinmetz_2013 transcript 507714 510154 . + . gene_id "ST00403"; transcript_id "YJR040W"; -chrX Steinmetz_2013 transcript 514032 516447 . + . gene_id "ST00404"; transcript_id "YJR042W"; -chrX Steinmetz_2013 transcript 522035 523904 . + . gene_id "ST00405"; transcript_id "YJR046W"; -chrX Steinmetz_2013 transcript 526289 526838 . + . gene_id "ST00406"; transcript_id "YJR048W"; -chrX Steinmetz_2013 transcript 528674 529679 . + . gene_id "ST00407"; transcript_id "YJR050W"; -chrX Steinmetz_2013 transcript 529792 531437 . + . gene_id "ST00408"; transcript_id "YJR051W"; -chrX Steinmetz_2013 transcript 532056 533825 . + . gene_id "ST00409"; transcript_id "YJR052W"; -chrX Steinmetz_2013 transcript 535950 537578 . + . gene_id "ST00410"; transcript_id "YJR054W"; -chrX Steinmetz_2013 transcript 538762 539659 . + . gene_id "ST00411"; transcript_id "YJR055W"; -chrX Steinmetz_2013 transcript 544055 544781 . + . gene_id "ST00412"; transcript_id "YJR057W"; -chrX Steinmetz_2013 transcript 545717 548441 . + . gene_id "ST00413"; transcript_id "YJR059W"; -chrX Steinmetz_2013 transcript 548710 550400 . + . gene_id "ST00414"; transcript_id "YJR060W"; -chrX Steinmetz_2013 transcript 555148 555703 . + . gene_id "ST00415"; transcript_id "YJR063W"; -chrX Steinmetz_2013 transcript 555864 557648 . + . gene_id "ST00416"; transcript_id "YJR064W"; -chrX Steinmetz_2013 transcript 567573 568775 . + . gene_id "ST00417"; transcript_id "YJR068W"; -chrX Steinmetz_2013 transcript 572345 573852 . + . gene_id "ST00418"; transcript_id "YJR074W"; -chrX Steinmetz_2013 transcript 573921 575369 . + . gene_id "ST00419"; transcript_id "YJR075W"; -chrX Steinmetz_2013 transcript 583710 585146 . + . gene_id "ST00420"; transcript_id "YJR084W"; -chrX Steinmetz_2013 transcript 585654 585912 . + . gene_id "ST00421"; transcript_id "CUT217"; -chrX Steinmetz_2013 transcript 587582 590662 . + . gene_id "ST00422"; transcript_id "YJR089W"; -chrX Steinmetz_2013 transcript 608285 608988 . + . gene_id "ST00423"; transcript_id "YJR094W-A"; -chrX Steinmetz_2013 transcript 609676 610934 . + . gene_id "ST00424"; transcript_id "YJR095W"; -chrX Steinmetz_2013 transcript 611073 612131 . + . gene_id "ST00425"; transcript_id "YJR096W"; -chrX Steinmetz_2013 transcript 612308 613119 . + . gene_id "ST00426"; transcript_id "YJR097W"; -chrX Steinmetz_2013 transcript 615459 616409 . + . gene_id "ST00427"; transcript_id "YJR099W"; -chrX Steinmetz_2013 transcript 618138 619174 . + . gene_id "ST00428"; transcript_id "YJR101W"; -chrX Steinmetz_2013 transcript 620747 622564 . + . gene_id "ST00429"; transcript_id "YJR103W"; -chrX Steinmetz_2013 transcript 623549 624648 . + . gene_id "ST00430"; transcript_id "YJR105W"; -chrX Steinmetz_2013 transcript 624763 627036 . + . gene_id "ST00431"; transcript_id "YJR106W"; -chrX Steinmetz_2013 transcript 627050 628436 . + . gene_id "ST00432"; transcript_id "YJR107W"; -chrX Steinmetz_2013 transcript 633489 635952 . + . gene_id "ST00433"; transcript_id "YJR110W"; -chrX Steinmetz_2013 transcript 637011 637687 . + . gene_id "ST00434"; transcript_id "YJR112W"; -chrX Steinmetz_2013 transcript 637757 638258 . + . gene_id "ST00435"; transcript_id "YJR112W-A"; -chrX Steinmetz_2013 transcript 639885 640684 . + . gene_id "ST00436"; transcript_id "YJR115W"; -chrX Steinmetz_2013 transcript 640717 641828 . + . gene_id "ST00437"; transcript_id "YJR116W"; -chrX Steinmetz_2013 transcript 641977 643482 . + . gene_id "ST00438"; transcript_id "YJR117W"; -chrX Steinmetz_2013 transcript 647516 649370 . + . gene_id "ST00439"; transcript_id "YJR121W"; -chrX Steinmetz_2013 transcript 649709 651335 . + . gene_id "ST00440"; transcript_id "YJR122W"; -chrX Steinmetz_2013 transcript 651865 652698 . + . gene_id "ST00441"; transcript_id "YJR123W"; -chrX Steinmetz_2013 transcript 667628 669348 . + . gene_id "ST00442"; transcript_id "YJR131W"; -chrX Steinmetz_2013 transcript 669461 672832 . + . gene_id "ST00443"; transcript_id "YJR132W"; -chrX Steinmetz_2013 transcript 672901 673726 . + . gene_id "ST00444"; transcript_id "YJR133W"; -chrX Steinmetz_2013 transcript 676951 677332 . + . gene_id "ST00445"; transcript_id "YJR135W-A"; -chrX Steinmetz_2013 transcript 695873 697065 . + . gene_id "ST00446"; transcript_id "YJR141W"; -chrX Steinmetz_2013 transcript 697125 698274 . + . gene_id "ST00447"; transcript_id "YJR142W"; -chrX Steinmetz_2013 transcript 700861 701757 . + . gene_id "ST00448"; transcript_id "YJR144W"; -chrX Steinmetz_2013 transcript 705687 706937 . + . gene_id "ST00449"; transcript_id "YJR148W"; -chrX Steinmetz_2013 transcript 719429 721386 . + . gene_id "ST00450"; transcript_id "YJR152W"; -chrX Steinmetz_2013 transcript 722478 723984 . + . gene_id "ST00451"; transcript_id "YJR153W"; -chrX Steinmetz_2013 transcript 727026 728328 . + . gene_id "ST00452"; transcript_id "YJR155W"; -chrXI Steinmetz_2013 transcript 3221 5738 . - . gene_id "ST00453"; transcript_id "YKL222C"; -chrXI Steinmetz_2013 transcript 5958 7790 . - . gene_id "ST00454"; transcript_id "SUT652"; -chrXI Steinmetz_2013 transcript 8915 11381 . - . gene_id "ST00455"; transcript_id "YKL220C"; -chrXI Steinmetz_2013 transcript 17126 18426 . - . gene_id "ST00456"; transcript_id "YKL218C"; -chrXI Steinmetz_2013 transcript 18354 19578 . - . gene_id "ST00457"; transcript_id "SUT655"; -chrXI Steinmetz_2013 transcript 22085 24096 . - . gene_id "ST00458"; transcript_id "SUT658"; -chrXI Steinmetz_2013 transcript 24131 24921 . - . gene_id "ST00459"; transcript_id "XUT_11R-13"; -chrXI Steinmetz_2013 transcript 31023 31757 . - . gene_id "ST00460"; transcript_id "YKL214C"; -chrXI Steinmetz_2013 transcript 31885 34145 . - . gene_id "ST00461"; transcript_id "YKL213C"; -chrXI Steinmetz_2013 transcript 48940 49831 . - . gene_id "ST00462"; transcript_id "YKL206C"; -chrXI Steinmetz_2013 transcript 68117 70528 . - . gene_id "ST00463"; transcript_id "YKL198C"; -chrXI Steinmetz_2013 transcript 70316 73897 . - . gene_id "ST00464"; transcript_id "YKL197C"; -chrXI Steinmetz_2013 transcript 74772 75581 . - . gene_id "ST00465"; transcript_id "YKL196C"; -chrXI Steinmetz_2013 transcript 77038 78679 . - . gene_id "ST00466"; transcript_id "YKL194C"; -chrXI Steinmetz_2013 transcript 78760 79921 . - . gene_id "ST00467"; transcript_id "YKL193C"; -chrXI Steinmetz_2013 transcript 80017 80562 . - . gene_id "ST00468"; transcript_id "YKL192C"; -chrXI Steinmetz_2013 transcript 92644 93525 . - . gene_id "ST00469"; transcript_id "YKL186C"; -chrXI Steinmetz_2013 transcript 110337 112518 . - . gene_id "ST00470"; transcript_id "YKL179C"; -chrXI Steinmetz_2013 transcript 112938 114670 . - . gene_id "ST00471"; transcript_id "YKL178C"; -chrXI Steinmetz_2013 transcript 115305 118332 . - . gene_id "ST00472"; transcript_id "YKL176C"; -chrXI Steinmetz_2013 transcript 120298 122322 . - . gene_id "ST00473"; transcript_id "YKL174C"; -chrXI Steinmetz_2013 transcript 130289 131191 . - . gene_id "ST00474"; transcript_id "YKL169C"; -chrXI Steinmetz_2013 transcript 131223 133463 . - . gene_id "ST00475"; transcript_id "YKL168C"; -chrXI Steinmetz_2013 transcript 133569 134154 . - . gene_id "ST00476"; transcript_id "YKL167C"; -chrXI Steinmetz_2013 transcript 134289 135737 . - . gene_id "ST00477"; transcript_id "YKL166C"; -chrXI Steinmetz_2013 transcript 137170 137594 . - . gene_id "ST00478"; transcript_id "XUT_11R-48"; -chrXI Steinmetz_2013 transcript 137775 140748 . - . gene_id "ST00479"; transcript_id "YKL165C"; -chrXI Steinmetz_2013 transcript 141536 142894 . - . gene_id "ST00480"; transcript_id "YKL164C"; -chrXI Steinmetz_2013 transcript 147489 148947 . - . gene_id "ST00481"; transcript_id "YKL162C"; -chrXI Steinmetz_2013 transcript 149054 150755 . - . gene_id "ST00482"; transcript_id "YKL161C"; -chrXI Steinmetz_2013 transcript 153713 154463 . - . gene_id "ST00483"; transcript_id "YKL159C"; -chrXI Steinmetz_2013 transcript 157729 158310 . - . gene_id "ST00484"; transcript_id "XUT_11R-63"; -chrXI Steinmetz_2013 transcript 157747 158310 . - . gene_id "ST00485"; transcript_id "CUT705"; -chrXI Steinmetz_2013 transcript 159365 161395 . - . gene_id "ST00486"; transcript_id "YKL155C"; -chrXI Steinmetz_2013 transcript 163508 164408 . - . gene_id "ST00487"; transcript_id "YKL152C"; -chrXI Steinmetz_2013 transcript 167461 168849 . - . gene_id "ST00488"; transcript_id "YKL149C"; -chrXI Steinmetz_2013 transcript 168974 171306 . - . gene_id "ST00489"; transcript_id "YKL148C"; -chrXI Steinmetz_2013 transcript 175716 176493 . - . gene_id "ST00490"; transcript_id "YKL144C"; -chrXI Steinmetz_2013 transcript 179112 179445 . - . gene_id "ST00491"; transcript_id "SUT662"; -chrXI Steinmetz_2013 transcript 184521 185034 . - . gene_id "ST00492"; transcript_id "YKL138C-A"; -chrXI Steinmetz_2013 transcript 185204 185767 . - . gene_id "ST00493"; transcript_id "YKL138C"; -chrXI Steinmetz_2013 transcript 186382 188725 . - . gene_id "ST00494"; transcript_id "YKL135C"; -chrXI Steinmetz_2013 transcript 188861 191494 . - . gene_id "ST00495"; transcript_id "YKL134C"; -chrXI Steinmetz_2013 transcript 191510 193083 . - . gene_id "ST00496"; transcript_id "YKL133C"; -chrXI Steinmetz_2013 transcript 193210 194949 . - . gene_id "ST00497"; transcript_id "YKL132C"; -chrXI Steinmetz_2013 transcript 195147 196078 . - . gene_id "ST00498"; transcript_id "YKL130C"; -chrXI Steinmetz_2013 transcript 196243 200259 . - . gene_id "ST00499"; transcript_id "YKL129C"; -chrXI Steinmetz_2013 transcript 200723 201802 . - . gene_id "ST00500"; transcript_id "YKL128C"; -chrXI Steinmetz_2013 transcript 212413 213032 . - . gene_id "ST00501"; transcript_id "YKL122C"; -chrXI Steinmetz_2013 transcript 218429 219260 . - . gene_id "ST00502"; transcript_id "YKL119C"; -chrXI Steinmetz_2013 transcript 224619 225901 . - . gene_id "ST00503"; transcript_id "YKL113C"; -chrXI Steinmetz_2013 transcript 228809 229902 . - . gene_id "ST00504"; transcript_id "YKL110C"; -chrXI Steinmetz_2013 transcript 236252 237269 . - . gene_id "ST00505"; transcript_id "YKL106C-A"; -chrXI Steinmetz_2013 transcript 238988 242782 . - . gene_id "ST00506"; transcript_id "YKL105C"; -chrXI Steinmetz_2013 transcript 242979 245575 . - . gene_id "ST00507"; transcript_id "YKL104C"; -chrXI Steinmetz_2013 transcript 245961 247736 . - . gene_id "ST00508"; transcript_id "YKL103C"; -chrXI Steinmetz_2013 transcript 253456 255483 . - . gene_id "ST00509"; transcript_id "YKL100C"; -chrXI Steinmetz_2013 transcript 255616 256547 . - . gene_id "ST00510"; transcript_id "YKL099C"; -chrXI Steinmetz_2013 transcript 261227 261906 . - . gene_id "ST00511"; transcript_id "XUT_11R-112"; -chrXI Steinmetz_2013 transcript 264296 265991 . - . gene_id "ST00512"; transcript_id "SUT665"; -chrXI Steinmetz_2013 transcript 265929 269535 . - . gene_id "ST00513"; transcript_id "YKL092C"; -chrXI Steinmetz_2013 transcript 269623 270686 . - . gene_id "ST00514"; transcript_id "YKL091C"; -chrXI Steinmetz_2013 transcript 277055 277962 . - . gene_id "ST00515"; transcript_id "YKL087C"; -chrXI Steinmetz_2013 transcript 280848 282379 . - . gene_id "ST00516"; transcript_id "YKL082C"; -chrXI Steinmetz_2013 transcript 294536 296217 . - . gene_id "ST00517"; transcript_id "YKL074C"; -chrXI Steinmetz_2013 transcript 303564 307082 . - . gene_id "ST00518"; transcript_id "SUT670"; -chrXI Steinmetz_2013 transcript 308929 309909 . - . gene_id "ST00519"; transcript_id "SUT671"; -chrXI Steinmetz_2013 transcript 315338 315889 . - . gene_id "ST00520"; transcript_id "XUT_11R-134"; -chrXI Steinmetz_2013 transcript 315384 316110 . - . gene_id "ST00521"; transcript_id "SUT672"; -chrXI Steinmetz_2013 transcript 316299 317093 . - . gene_id "ST00522"; transcript_id "YKL065C"; -chrXI Steinmetz_2013 transcript 320844 321684 . - . gene_id "ST00523"; transcript_id "YKL063C"; -chrXI Steinmetz_2013 transcript 325435 325897 . - . gene_id "ST00524"; transcript_id "CUT715"; -chrXI Steinmetz_2013 transcript 325848 326218 . - . gene_id "ST00525"; transcript_id "CUT716"; -chrXI Steinmetz_2013 transcript 326356 327511 . - . gene_id "ST00526"; transcript_id "YKL060C"; -chrXI Steinmetz_2013 transcript 328028 329513 . - . gene_id "ST00527"; transcript_id "YKL059C"; -chrXI Steinmetz_2013 transcript 330806 334018 . - . gene_id "ST00528"; transcript_id "YKL057C"; -chrXI Steinmetz_2013 transcript 334305 334958 . - . gene_id "ST00529"; transcript_id "YKL056C"; -chrXI Steinmetz_2013 transcript 335016 336191 . - . gene_id "ST00530"; transcript_id "YKL055C"; -chrXI Steinmetz_2013 transcript 336322 338850 . - . gene_id "ST00531"; transcript_id "YKL054C"; -chrXI Steinmetz_2013 transcript 339065 339528 . - . gene_id "ST00532"; transcript_id "YKL053C-A"; -chrXI Steinmetz_2013 transcript 339628 340569 . - . gene_id "ST00533"; transcript_id "YKL052C"; -chrXI Steinmetz_2013 transcript 341222 342110 . - . gene_id "ST00534"; transcript_id "SUT674"; -chrXI Steinmetz_2013 transcript 345963 346830 . - . gene_id "ST00535"; transcript_id "YKL049C"; -chrXI Steinmetz_2013 transcript 347033 349250 . - . gene_id "ST00536"; transcript_id "YKL048C"; -chrXI Steinmetz_2013 transcript 351039 352857 . - . gene_id "ST00537"; transcript_id "YKL046C"; -chrXI Steinmetz_2013 transcript 355108 355985 . - . gene_id "ST00538"; transcript_id "SUT675"; -chrXI Steinmetz_2013 transcript 360808 361856 . - . gene_id "ST00539"; transcript_id "YKL040C"; -chrXI Steinmetz_2013 transcript 360120 360771 . - . gene_id "ST00540"; transcript_id "SUT676"; -chrXI Steinmetz_2013 transcript 361937 362371 . - . gene_id "ST00541"; transcript_id "SUT677"; -chrXI Steinmetz_2013 transcript 364286 365192 . - . gene_id "ST00542"; transcript_id "SUT678"; -chrXI Steinmetz_2013 transcript 369197 369944 . - . gene_id "ST00543"; transcript_id "YKL036C"; -chrXI Steinmetz_2013 transcript 382596 384749 . - . gene_id "ST00544"; transcript_id "YKL029C"; -chrXI Steinmetz_2013 transcript 389185 389997 . - . gene_id "ST00545"; transcript_id "YKL026C"; -chrXI Steinmetz_2013 transcript 390180 392313 . - . gene_id "ST00546"; transcript_id "YKL025C"; -chrXI Steinmetz_2013 transcript 398766 402146 . - . gene_id "ST00547"; transcript_id "YKL020C"; -chrXI Steinmetz_2013 transcript 403491 403920 . - . gene_id "ST00548"; transcript_id "YKL018C-A"; -chrXI Steinmetz_2013 transcript 405079 407249 . - . gene_id "ST00549"; transcript_id "YKL017C"; -chrXI Steinmetz_2013 transcript 407370 408060 . - . gene_id "ST00550"; transcript_id "YKL016C"; -chrXI Steinmetz_2013 transcript 417336 418068 . - . gene_id "ST00551"; transcript_id "YKL013C"; -chrXI Steinmetz_2013 transcript 420064 421219 . - . gene_id "ST00552"; transcript_id "YKL011C"; -chrXI Steinmetz_2013 transcript 421365 425979 . - . gene_id "ST00553"; transcript_id "YKL010C"; -chrXI Steinmetz_2013 transcript 427164 428592 . - . gene_id "ST00554"; transcript_id "YKL008C"; -chrXI Steinmetz_2013 transcript 430067 430674 . - . gene_id "ST00555"; transcript_id "YKL006C-A"; -chrXI Steinmetz_2013 transcript 432920 435004 . - . gene_id "ST00556"; transcript_id "YKL005C"; -chrXI Steinmetz_2013 transcript 436999 437533 . - . gene_id "ST00557"; transcript_id "YKL003C"; -chrXI Steinmetz_2013 transcript 438704 439429 . - . gene_id "ST00558"; transcript_id "YKL001C"; -chrXI Steinmetz_2013 transcript 440484 442757 . - . gene_id "ST00559"; transcript_id "YKR001C"; -chrXI Steinmetz_2013 transcript 446751 448079 . - . gene_id "ST00560"; transcript_id "YKR004C"; -chrXI Steinmetz_2013 transcript 448403 450250 . - . gene_id "ST00561"; transcript_id "YKR005C"; -chrXI Steinmetz_2013 transcript 450332 451228 . - . gene_id "ST00562"; transcript_id "YKR006C"; -chrXI Steinmetz_2013 transcript 454217 457131 . - . gene_id "ST00563"; transcript_id "YKR009C"; -chrXI Steinmetz_2013 transcript 458811 461330 . - . gene_id "ST00564"; transcript_id "YKR010C"; -chrXI Steinmetz_2013 transcript 461520 462815 . - . gene_id "ST00565"; transcript_id "YKR011C"; -chrXI Steinmetz_2013 transcript 462986 463502 . - . gene_id "ST00566"; transcript_id "XUT_11R-208"; -chrXI Steinmetz_2013 transcript 463284 465026 . - . gene_id "ST00567"; transcript_id "YKR012C"; -chrXI Steinmetz_2013 transcript 463806 465026 . - . gene_id "ST00568"; transcript_id "XUT_11R-209"; -chrXI Steinmetz_2013 transcript 465272 466214 . - . gene_id "ST00569"; transcript_id "YKR014C"; -chrXI Steinmetz_2013 transcript 466760 469367 . - . gene_id "ST00570"; transcript_id "YKR015C"; -chrXI Steinmetz_2013 transcript 471544 473456 . - . gene_id "ST00571"; transcript_id "YKR017C"; -chrXI Steinmetz_2013 transcript 473570 475939 . - . gene_id "ST00572"; transcript_id "YKR018C"; -chrXI Steinmetz_2013 transcript 476133 478139 . - . gene_id "ST00573"; transcript_id "YKR019C"; -chrXI Steinmetz_2013 transcript 482047 483195 . - . gene_id "ST00574"; transcript_id "YKR022C"; -chrXI Steinmetz_2013 transcript 485067 487399 . - . gene_id "ST00575"; transcript_id "YKR024C"; -chrXI Steinmetz_2013 transcript 488553 489761 . - . gene_id "ST00576"; transcript_id "YKR026C"; -chrXI Steinmetz_2013 transcript 493126 493659 . - . gene_id "ST00577"; transcript_id "CUT721"; -chrXI Steinmetz_2013 transcript 497471 499838 . - . gene_id "ST00578"; transcript_id "YKR029C"; -chrXI Steinmetz_2013 transcript 508583 510663 . - . gene_id "ST00579"; transcript_id "YKR036C"; -chrXI Steinmetz_2013 transcript 510744 511816 . - . gene_id "ST00580"; transcript_id "YKR037C"; -chrXI Steinmetz_2013 transcript 511890 513168 . - . gene_id "ST00581"; transcript_id "YKR038C"; -chrXI Steinmetz_2013 transcript 513563 514427 . - . gene_id "ST00582"; transcript_id "XUT_11R-223"; -chrXI Steinmetz_2013 transcript 514058 514463 . - . gene_id "ST00583"; transcript_id "SUT679"; -chrXI Steinmetz_2013 transcript 520744 521732 . - . gene_id "ST00584"; transcript_id "YKR043C"; -chrXI Steinmetz_2013 transcript 523297 523997 . - . gene_id "ST00585"; transcript_id "YKR045C"; -chrXI Steinmetz_2013 transcript 521867 523581 . - . gene_id "ST00586"; transcript_id "SUT681"; -chrXI Steinmetz_2013 transcript 524059 525083 . - . gene_id "ST00587"; transcript_id "YKR046C"; -chrXI Steinmetz_2013 transcript 525255 526659 . - . gene_id "ST00588"; transcript_id "YKR048C"; -chrXI Steinmetz_2013 transcript 526767 527248 . - . gene_id "ST00589"; transcript_id "YKR049C"; -chrXI Steinmetz_2013 transcript 532182 533535 . - . gene_id "ST00590"; transcript_id "YKR052C"; -chrXI Steinmetz_2013 transcript 533544 533898 . - . gene_id "ST00591"; transcript_id "SUT683"; -chrXI Steinmetz_2013 transcript 533998 535499 . - . gene_id "ST00592"; transcript_id "YKR053C"; -chrXI Steinmetz_2013 transcript 554126 554655 . - . gene_id "ST00593"; transcript_id "CUT723"; -chrXI Steinmetz_2013 transcript 560676 562303 . - . gene_id "ST00594"; transcript_id "YKR063C"; -chrXI Steinmetz_2013 transcript 565163 565921 . - . gene_id "ST00595"; transcript_id "YKR065C"; -chrXI Steinmetz_2013 transcript 566021 567218 . - . gene_id "ST00596"; transcript_id "YKR066C"; -chrXI Steinmetz_2013 transcript 570222 570957 . - . gene_id "ST00597"; transcript_id "YKR068C"; -chrXI Steinmetz_2013 transcript 571067 571235 . - . gene_id "ST00598"; transcript_id "CUT727"; -chrXI Steinmetz_2013 transcript 574680 576043 . - . gene_id "ST00599"; transcript_id "YKR071C"; -chrXI Steinmetz_2013 transcript 576335 578183 . - . gene_id "ST00600"; transcript_id "YKR072C"; -chrXI Steinmetz_2013 transcript 579665 580781 . - . gene_id "ST00601"; transcript_id "YKR075C"; -chrXI Steinmetz_2013 transcript 586643 589509 . - . gene_id "ST00602"; transcript_id "YKR079C"; -chrXI Steinmetz_2013 transcript 591412 592561 . - . gene_id "ST00603"; transcript_id "YKR081C"; -chrXI Steinmetz_2013 transcript 596287 596870 . - . gene_id "ST00604"; transcript_id "YKR083C"; -chrXI Steinmetz_2013 transcript 596947 598925 . - . gene_id "ST00605"; transcript_id "YKR084C"; -chrXI Steinmetz_2013 transcript 599014 599700 . - . gene_id "ST00606"; transcript_id "YKR085C"; -chrXI Steinmetz_2013 transcript 603095 604254 . - . gene_id "ST00607"; transcript_id "YKR087C"; -chrXI Steinmetz_2013 transcript 604332 605431 . - . gene_id "ST00608"; transcript_id "YKR088C"; -chrXI Steinmetz_2013 transcript 605551 608442 . - . gene_id "ST00609"; transcript_id "YKR089C"; -chrXI Steinmetz_2013 transcript 612418 613914 . - . gene_id "ST00610"; transcript_id "YKR092C"; -chrXI Steinmetz_2013 transcript 614125 614782 . - . gene_id "ST00611"; transcript_id "CUT729"; -chrXI Steinmetz_2013 transcript 617808 618777 . - . gene_id "ST00612"; transcript_id "YKR094C"; -chrXI Steinmetz_2013 transcript 626236 626494 . - . gene_id "ST00613"; transcript_id "XUT_11R-265"; -chrXI Steinmetz_2013 transcript 632942 635316 . - . gene_id "ST00614"; transcript_id "YKR098C"; -chrXI Steinmetz_2013 transcript 638438 640319 . - . gene_id "ST00615"; transcript_id "YKR100C"; -chrXI Steinmetz_2013 transcript 649977 650347 . - . gene_id "ST00616"; transcript_id "SUT684"; -chrXI Steinmetz_2013 transcript 8105 8891 . + . gene_id "ST00617"; transcript_id "XUT_11F-3"; -chrXI Steinmetz_2013 transcript 18610 19756 . + . gene_id "ST00618"; transcript_id "SUT218"; -chrXI Steinmetz_2013 transcript 19503 21216 . + . gene_id "ST00619"; transcript_id "SUT219"; -chrXI Steinmetz_2013 transcript 21228 22040 . + . gene_id "ST00620"; transcript_id "SUT220"; -chrXI Steinmetz_2013 transcript 21908 24218 . + . gene_id "ST00621"; transcript_id "YKL217W"; -chrXI Steinmetz_2013 transcript 24328 24956 . + . gene_id "ST00622"; transcript_id "XUT_11F-16"; -chrXI Steinmetz_2013 transcript 25173 26448 . + . gene_id "ST00623"; transcript_id "YKL216W"; -chrXI Steinmetz_2013 transcript 34342 36508 . + . gene_id "ST00624"; transcript_id "YKL212W"; -chrXI Steinmetz_2013 transcript 39114 42251 . + . gene_id "ST00625"; transcript_id "YKL210W"; -chrXI Steinmetz_2013 transcript 47143 48040 . + . gene_id "ST00626"; transcript_id "YKL208W"; -chrXI Steinmetz_2013 transcript 48163 49007 . + . gene_id "ST00627"; transcript_id "YKL207W"; -chrXI Steinmetz_2013 transcript 50020 53479 . + . gene_id "ST00628"; transcript_id "YKL205W"; -chrXI Steinmetz_2013 transcript 53670 55776 . + . gene_id "ST00629"; transcript_id "YKL204W"; -chrXI Steinmetz_2013 transcript 66492 67646 . + . gene_id "ST00630"; transcript_id "SUT221"; -chrXI Steinmetz_2013 transcript 69799 70424 . + . gene_id "ST00631"; transcript_id "SUT222"; -chrXI Steinmetz_2013 transcript 75787 77161 . + . gene_id "ST00632"; transcript_id "YKL195W"; -chrXI Steinmetz_2013 transcript 81005 82732 . + . gene_id "ST00633"; transcript_id "YKL191W"; -chrXI Steinmetz_2013 transcript 82901 83718 . + . gene_id "ST00634"; transcript_id "YKL190W"; -chrXI Steinmetz_2013 transcript 84605 86030 . + . gene_id "ST00635"; transcript_id "YKL189W"; -chrXI Steinmetz_2013 transcript 94151 96378 . + . gene_id "ST00636"; transcript_id "YKL185W"; -chrXI Steinmetz_2013 transcript 96597 98440 . + . gene_id "ST00637"; transcript_id "YKL184W"; -chrXI Steinmetz_2013 transcript 98578 99769 . + . gene_id "ST00638"; transcript_id "YKL183W"; -chrXI Steinmetz_2013 transcript 107140 108672 . + . gene_id "ST00639"; transcript_id "YKL181W"; -chrXI Steinmetz_2013 transcript 109248 110238 . + . gene_id "ST00640"; transcript_id "YKL180W"; -chrXI Steinmetz_2013 transcript 115082 115641 . + . gene_id "ST00641"; transcript_id "SUT226"; -chrXI Steinmetz_2013 transcript 118747 120469 . + . gene_id "ST00642"; transcript_id "YKL175W"; -chrXI Steinmetz_2013 transcript 122492 125646 . + . gene_id "ST00643"; transcript_id "YKL173W"; -chrXI Steinmetz_2013 transcript 125740 127141 . + . gene_id "ST00644"; transcript_id "YKL172W"; -chrXI Steinmetz_2013 transcript 127328 130410 . + . gene_id "ST00645"; transcript_id "YKL171W"; -chrXI Steinmetz_2013 transcript 130561 131186 . + . gene_id "ST00646"; transcript_id "YKL170W"; -chrXI Steinmetz_2013 transcript 143579 145682 . + . gene_id "ST00647"; transcript_id "YKL163W"; -chrXI Steinmetz_2013 transcript 150724 152898 . + . gene_id "ST00648"; transcript_id "SUT229"; -chrXI Steinmetz_2013 transcript 153261 153778 . + . gene_id "ST00649"; transcript_id "YKL160W"; -chrXI Steinmetz_2013 transcript 154967 158376 . + . gene_id "ST00650"; transcript_id "YKL157W"; -chrXI Steinmetz_2013 transcript 158595 159439 . + . gene_id "ST00651"; transcript_id "YKL156W"; -chrXI Steinmetz_2013 transcript 161521 162400 . + . gene_id "ST00652"; transcript_id "YKL154W"; -chrXI Steinmetz_2013 transcript 166261 167572 . + . gene_id "ST00653"; transcript_id "YKL150W"; -chrXI Steinmetz_2013 transcript 171762 173947 . + . gene_id "ST00654"; transcript_id "YKL146W"; -chrXI Steinmetz_2013 transcript 176727 178253 . + . gene_id "ST00655"; transcript_id "YKL143W"; -chrXI Steinmetz_2013 transcript 178457 179314 . + . gene_id "ST00656"; transcript_id "YKL142W"; -chrXI Steinmetz_2013 transcript 179630 180381 . + . gene_id "ST00657"; transcript_id "YKL141W"; -chrXI Steinmetz_2013 transcript 180505 182588 . + . gene_id "ST00658"; transcript_id "YKL140W"; -chrXI Steinmetz_2013 transcript 182781 184575 . + . gene_id "ST00659"; transcript_id "YKL139W"; -chrXI Steinmetz_2013 transcript 185891 186405 . + . gene_id "ST00660"; transcript_id "YKL137W"; -chrXI Steinmetz_2013 transcript 195216 195854 . + . gene_id "ST00661"; transcript_id "XUT_11F-87"; -chrXI Steinmetz_2013 transcript 195246 195719 . + . gene_id "ST00662"; transcript_id "SUT231"; -chrXI Steinmetz_2013 transcript 203516 205397 . + . gene_id "ST00663"; transcript_id "YKL127W"; -chrXI Steinmetz_2013 transcript 205499 207822 . + . gene_id "ST00664"; transcript_id "YKL126W"; -chrXI Steinmetz_2013 transcript 208156 210289 . + . gene_id "ST00665"; transcript_id "YKL125W"; -chrXI Steinmetz_2013 transcript 213927 216824 . + . gene_id "ST00666"; transcript_id "YKL121W"; -chrXI Steinmetz_2013 transcript 217267 218450 . + . gene_id "ST00667"; transcript_id "YKL120W"; -chrXI Steinmetz_2013 transcript 220293 221193 . + . gene_id "ST00668"; transcript_id "YKL117W"; -chrXI Steinmetz_2013 transcript 226403 228906 . + . gene_id "ST00669"; transcript_id "YKL112W"; -chrXI Steinmetz_2013 transcript 230291 230711 . + . gene_id "ST00670"; transcript_id "XUT_11F-102"; -chrXI Steinmetz_2013 transcript 231956 234032 . + . gene_id "ST00671"; transcript_id "YKL109W"; -chrXI Steinmetz_2013 transcript 234232 235854 . + . gene_id "ST00672"; transcript_id "YKL108W"; -chrXI Steinmetz_2013 transcript 236107 237211 . + . gene_id "ST00673"; transcript_id "YKL107W"; -chrXI Steinmetz_2013 transcript 237473 239020 . + . gene_id "ST00674"; transcript_id "YKL106W"; -chrXI Steinmetz_2013 transcript 246173 246621 . + . gene_id "ST00675"; transcript_id "CUT229"; -chrXI Steinmetz_2013 transcript 248659 253532 . + . gene_id "ST00676"; transcript_id "YKL101W"; -chrXI Steinmetz_2013 transcript 256744 257927 . + . gene_id "ST00677"; transcript_id "YKL098W"; -chrXI Steinmetz_2013 transcript 259205 259705 . + . gene_id "ST00678"; transcript_id "YKL096W-A"; -chrXI Steinmetz_2013 transcript 261085 261945 . + . gene_id "ST00679"; transcript_id "YKL096W"; -chrXI Steinmetz_2013 transcript 263326 264379 . + . gene_id "ST00680"; transcript_id "YKL094W"; -chrXI Steinmetz_2013 transcript 264723 265964 . + . gene_id "ST00681"; transcript_id "YKL093W"; -chrXI Steinmetz_2013 transcript 271873 273374 . + . gene_id "ST00682"; transcript_id "YKL090W"; -chrXI Steinmetz_2013 transcript 273369 275168 . + . gene_id "ST00683"; transcript_id "YKL089W"; -chrXI Steinmetz_2013 transcript 275254 277208 . + . gene_id "ST00684"; transcript_id "YKL088W"; -chrXI Steinmetz_2013 transcript 278263 278720 . + . gene_id "ST00685"; transcript_id "YKL086W"; -chrXI Steinmetz_2013 transcript 279042 280162 . + . gene_id "ST00686"; transcript_id "YKL085W"; -chrXI Steinmetz_2013 transcript 282866 284660 . + . gene_id "ST00687"; transcript_id "YKL081W"; -chrXI Steinmetz_2013 transcript 284943 286259 . + . gene_id "ST00688"; transcript_id "YKL080W"; -chrXI Steinmetz_2013 transcript 286526 288646 . + . gene_id "ST00689"; transcript_id "YKL079W"; -chrXI Steinmetz_2013 transcript 288812 291136 . + . gene_id "ST00690"; transcript_id "YKL078W"; -chrXI Steinmetz_2013 transcript 291389 292833 . + . gene_id "ST00691"; transcript_id "YKL077W"; -chrXI Steinmetz_2013 transcript 296377 299168 . + . gene_id "ST00692"; transcript_id "YKL073W"; -chrXI Steinmetz_2013 transcript 299344 302014 . + . gene_id "ST00693"; transcript_id "YKL072W"; -chrXI Steinmetz_2013 transcript 304213 304987 . + . gene_id "ST00694"; transcript_id "XUT_11F-137"; -chrXI Steinmetz_2013 transcript 304906 305971 . + . gene_id "ST00695"; transcript_id "YKL071W"; -chrXI Steinmetz_2013 transcript 307277 307858 . + . gene_id "ST00696"; transcript_id "YKL069W"; -chrXI Steinmetz_2013 transcript 309161 309771 . + . gene_id "ST00697"; transcript_id "YKL068W-A"; -chrXI Steinmetz_2013 transcript 310079 313180 . + . gene_id "ST00698"; transcript_id "YKL068W"; -chrXI Steinmetz_2013 transcript 315732 316236 . + . gene_id "ST00699"; transcript_id "YKL065W-A"; -chrXI Steinmetz_2013 transcript 317607 320709 . + . gene_id "ST00700"; transcript_id "YKL064W"; -chrXI Steinmetz_2013 transcript 323222 325544 . + . gene_id "ST00701"; transcript_id "YKL062W"; -chrXI Steinmetz_2013 transcript 325763 326357 . + . gene_id "ST00702"; transcript_id "YKL061W"; -chrXI Steinmetz_2013 transcript 330136 330753 . + . gene_id "ST00703"; transcript_id "YKL058W"; -chrXI Steinmetz_2013 transcript 339153 341226 . + . gene_id "ST00704"; transcript_id "YKL053W"; -chrXI Steinmetz_2013 transcript 341177 342546 . + . gene_id "ST00705"; transcript_id "YKL051W"; -chrXI Steinmetz_2013 transcript 349442 351129 . + . gene_id "ST00706"; transcript_id "YKL047W"; -chrXI Steinmetz_2013 transcript 353411 355182 . + . gene_id "ST00707"; transcript_id "YKL045W"; -chrXI Steinmetz_2013 transcript 356279 356658 . + . gene_id "ST00708"; transcript_id "YKL044W"; -chrXI Steinmetz_2013 transcript 358337 359773 . + . gene_id "ST00709"; transcript_id "YKL042W"; -chrXI Steinmetz_2013 transcript 360049 360894 . + . gene_id "ST00710"; transcript_id "YKL041W"; -chrXI Steinmetz_2013 transcript 362504 364446 . + . gene_id "ST00711"; transcript_id "YKL039W"; -chrXI Steinmetz_2013 transcript 365370 369283 . + . gene_id "ST00712"; transcript_id "YKL038W"; -chrXI Steinmetz_2013 transcript 369820 371558 . + . gene_id "ST00713"; transcript_id "YKL035W"; -chrXI Steinmetz_2013 transcript 371784 374218 . + . gene_id "ST00714"; transcript_id "YKL034W"; -chrXI Steinmetz_2013 transcript 374429 375285 . + . gene_id "ST00715"; transcript_id "YKL033W-A"; -chrXI Steinmetz_2013 transcript 375427 378707 . + . gene_id "ST00716"; transcript_id "YKL033W"; -chrXI Steinmetz_2013 transcript 385714 387520 . + . gene_id "ST00717"; transcript_id "YKL028W"; -chrXI Steinmetz_2013 transcript 387505 389012 . + . gene_id "ST00718"; transcript_id "YKL027W"; -chrXI Steinmetz_2013 transcript 393708 394707 . + . gene_id "ST00719"; transcript_id "YKL023W"; -chrXI Steinmetz_2013 transcript 402549 403594 . + . gene_id "ST00720"; transcript_id "YKL019W"; -chrXI Steinmetz_2013 transcript 404072 405217 . + . gene_id "ST00721"; transcript_id "YKL018W"; -chrXI Steinmetz_2013 transcript 408446 411610 . + . gene_id "ST00722"; transcript_id "YKL015W"; -chrXI Steinmetz_2013 transcript 418247 420199 . + . gene_id "ST00723"; transcript_id "YKL012W"; -chrXI Steinmetz_2013 transcript 420309 420910 . + . gene_id "ST00724"; transcript_id "XUT_11F-183"; -chrXI Steinmetz_2013 transcript 420309 421435 . + . gene_id "ST00725"; transcript_id "CUT237"; -chrXI Steinmetz_2013 transcript 426200 427045 . + . gene_id "ST00726"; transcript_id "YKL009W"; -chrXI Steinmetz_2013 transcript 429261 430246 . + . gene_id "ST00727"; transcript_id "YKL007W"; -chrXI Steinmetz_2013 transcript 431887 432791 . + . gene_id "ST00728"; transcript_id "YKL006W"; -chrXI Steinmetz_2013 transcript 435224 436934 . + . gene_id "ST00729"; transcript_id "YKL004W"; -chrXI Steinmetz_2013 transcript 437701 438620 . + . gene_id "ST00730"; transcript_id "YKL002W"; -chrXI Steinmetz_2013 transcript 439792 440114 . + . gene_id "ST00731"; transcript_id "CUT238"; -chrXI Steinmetz_2013 transcript 443027 444993 . + . gene_id "ST00732"; transcript_id "YKR002W"; -chrXI Steinmetz_2013 transcript 445292 446816 . + . gene_id "ST00733"; transcript_id "YKR003W"; -chrXI Steinmetz_2013 transcript 446715 447697 . + . gene_id "ST00734"; transcript_id "SUT235"; -chrXI Steinmetz_2013 transcript 451430 452072 . + . gene_id "ST00735"; transcript_id "YKR007W"; -chrXI Steinmetz_2013 transcript 452169 454203 . + . gene_id "ST00736"; transcript_id "YKR008W"; -chrXI Steinmetz_2013 transcript 454898 457238 . + . gene_id "ST00737"; transcript_id "SUT236"; -chrXI Steinmetz_2013 transcript 461586 462783 . + . gene_id "ST00738"; transcript_id "SUT237"; -chrXI Steinmetz_2013 transcript 463919 465075 . + . gene_id "ST00739"; transcript_id "YKR013W"; -chrXI Steinmetz_2013 transcript 466396 468781 . + . gene_id "ST00740"; transcript_id "SUT238"; -chrXI Steinmetz_2013 transcript 466402 468370 . + . gene_id "ST00741"; transcript_id "XUT_11F-209"; -chrXI Steinmetz_2013 transcript 469671 471598 . + . gene_id "ST00742"; transcript_id "YKR016W"; -chrXI Steinmetz_2013 transcript 478330 479069 . + . gene_id "ST00743"; transcript_id "YKR020W"; -chrXI Steinmetz_2013 transcript 479165 482117 . + . gene_id "ST00744"; transcript_id "YKR021W"; -chrXI Steinmetz_2013 transcript 483355 485095 . + . gene_id "ST00745"; transcript_id "YKR023W"; -chrXI Steinmetz_2013 transcript 487739 488720 . + . gene_id "ST00746"; transcript_id "YKR025W"; -chrXI Steinmetz_2013 transcript 489887 490131 . + . gene_id "ST00747"; transcript_id "XUT_11F-216"; -chrXI Steinmetz_2013 transcript 491265 493740 . + . gene_id "ST00748"; transcript_id "YKR027W"; -chrXI Steinmetz_2013 transcript 493882 497533 . + . gene_id "ST00749"; transcript_id "YKR028W"; -chrXI Steinmetz_2013 transcript 500230 501219 . + . gene_id "ST00750"; transcript_id "YKR030W"; -chrXI Steinmetz_2013 transcript 507922 508681 . + . gene_id "ST00751"; transcript_id "YKR035W-A"; -chrXI Steinmetz_2013 transcript 514119 514659 . + . gene_id "ST00752"; transcript_id "SUT239"; -chrXI Steinmetz_2013 transcript 514991 516976 . + . gene_id "ST00753"; transcript_id "YKR039W"; -chrXI Steinmetz_2013 transcript 518192 519364 . + . gene_id "ST00754"; transcript_id "YKR041W"; -chrXI Steinmetz_2013 transcript 519320 520858 . + . gene_id "ST00755"; transcript_id "YKR042W"; -chrXI Steinmetz_2013 transcript 521861 523414 . + . gene_id "ST00756"; transcript_id "YKR044W"; -chrXI Steinmetz_2013 transcript 526866 530557 . + . gene_id "ST00757"; transcript_id "YKR050W"; -chrXI Steinmetz_2013 transcript 530829 532278 . + . gene_id "ST00758"; transcript_id "YKR051W"; -chrXI Steinmetz_2013 transcript 534047 535534 . + . gene_id "ST00759"; transcript_id "SUT240"; -chrXI Steinmetz_2013 transcript 548165 549393 . + . gene_id "ST00760"; transcript_id "YKR055W"; -chrXI Steinmetz_2013 transcript 551627 552420 . + . gene_id "ST00761"; transcript_id "YKR057W"; -chrXI Steinmetz_2013 transcript 552589 554712 . + . gene_id "ST00762"; transcript_id "YKR058W"; -chrXI Steinmetz_2013 transcript 554959 556285 . + . gene_id "ST00763"; transcript_id "YKR059W"; -chrXI Steinmetz_2013 transcript 556491 557407 . + . gene_id "ST00764"; transcript_id "YKR060W"; -chrXI Steinmetz_2013 transcript 557595 559024 . + . gene_id "ST00765"; transcript_id "YKR061W"; -chrXI Steinmetz_2013 transcript 559605 560773 . + . gene_id "ST00766"; transcript_id "YKR062W"; -chrXI Steinmetz_2013 transcript 562503 565199 . + . gene_id "ST00767"; transcript_id "YKR064W"; -chrXI Steinmetz_2013 transcript 567851 570304 . + . gene_id "ST00768"; transcript_id "YKR067W"; -chrXI Steinmetz_2013 transcript 571450 573428 . + . gene_id "ST00769"; transcript_id "YKR069W"; -chrXI Steinmetz_2013 transcript 573570 574816 . + . gene_id "ST00770"; transcript_id "YKR070W"; -chrXI Steinmetz_2013 transcript 578475 578903 . + . gene_id "ST00771"; transcript_id "XUT_11F-252"; -chrXI Steinmetz_2013 transcript 579209 579800 . + . gene_id "ST00772"; transcript_id "YKR074W"; -chrXI Steinmetz_2013 transcript 582206 583450 . + . gene_id "ST00773"; transcript_id "YKR076W"; -chrXI Steinmetz_2013 transcript 583628 584828 . + . gene_id "ST00774"; transcript_id "YKR077W"; -chrXI Steinmetz_2013 transcript 584935 586752 . + . gene_id "ST00775"; transcript_id "YKR078W"; -chrXI Steinmetz_2013 transcript 590337 591507 . + . gene_id "ST00776"; transcript_id "YKR080W"; -chrXI Steinmetz_2013 transcript 592777 596378 . + . gene_id "ST00777"; transcript_id "YKR082W"; -chrXI Steinmetz_2013 transcript 599833 603165 . + . gene_id "ST00778"; transcript_id "YKR086W"; -chrXI Steinmetz_2013 transcript 608773 611207 . + . gene_id "ST00779"; transcript_id "YKR090W"; -chrXI Steinmetz_2013 transcript 611493 612393 . + . gene_id "ST00780"; transcript_id "YKR091W"; -chrXI Steinmetz_2013 transcript 615636 617735 . + . gene_id "ST00781"; transcript_id "YKR093W"; -chrXI Steinmetz_2013 transcript 618920 619542 . + . gene_id "ST00782"; transcript_id "SUT242"; -chrXI Steinmetz_2013 transcript 625850 626326 . + . gene_id "ST00783"; transcript_id "YKR095W-A"; -chrXI Steinmetz_2013 transcript 626546 630490 . + . gene_id "ST00784"; transcript_id "YKR096W"; -chrXI Steinmetz_2013 transcript 631005 632832 . + . gene_id "ST00785"; transcript_id "YKR097W"; -chrXI Steinmetz_2013 transcript 635594 638394 . + . gene_id "ST00786"; transcript_id "YKR099W"; -chrXI Steinmetz_2013 transcript 640530 642736 . + . gene_id "ST00787"; transcript_id "YKR101W"; -chrXI Steinmetz_2013 transcript 643001 644399 . + . gene_id "ST00788"; transcript_id "XUT_11F-281"; -chrXII Steinmetz_2013 transcript 14604 16376 . - . gene_id "ST00789"; transcript_id "YLL063C"; -chrXII Steinmetz_2013 transcript 16108 17732 . - . gene_id "ST00790"; transcript_id "YLL062C"; -chrXII Steinmetz_2013 transcript 20916 22121 . - . gene_id "ST00791"; transcript_id "YLL060C"; -chrXII Steinmetz_2013 transcript 27288 29513 . - . gene_id "ST00792"; transcript_id "YLL056C"; -chrXII Steinmetz_2013 transcript 32313 35232 . - . gene_id "ST00793"; transcript_id "YLL054C"; -chrXII Steinmetz_2013 transcript 37145 39485 . - . gene_id "ST00794"; transcript_id "YLL051C"; -chrXII Steinmetz_2013 transcript 39680 40439 . - . gene_id "ST00795"; transcript_id "YLL050C"; -chrXII Steinmetz_2013 transcript 47782 48652 . - . gene_id "ST00796"; transcript_id "YLL045C"; -chrXII Steinmetz_2013 transcript 51980 52639 . - . gene_id "ST00797"; transcript_id "YLL042C"; -chrXII Steinmetz_2013 transcript 52763 53990 . - . gene_id "ST00798"; transcript_id "YLL041C"; -chrXII Steinmetz_2013 transcript 63943 65304 . - . gene_id "ST00799"; transcript_id "YLL039C"; -chrXII Steinmetz_2013 transcript 65235 66552 . - . gene_id "ST00800"; transcript_id "YLL038C"; -chrXII Steinmetz_2013 transcript 66685 68283 . - . gene_id "ST00801"; transcript_id "YLL036C"; -chrXII Steinmetz_2013 transcript 70482 73184 . - . gene_id "ST00802"; transcript_id "YLL034C"; -chrXII Steinmetz_2013 transcript 73596 76852 . - . gene_id "ST00803"; transcript_id "YLL032C"; -chrXII Steinmetz_2013 transcript 77059 80258 . - . gene_id "ST00804"; transcript_id "YLL031C"; -chrXII Steinmetz_2013 transcript 94604 95111 . - . gene_id "ST00805"; transcript_id "XUT_12R-33"; -chrXII Steinmetz_2013 transcript 95432 97515 . - . gene_id "ST00806"; transcript_id "YLL024C"; -chrXII Steinmetz_2013 transcript 97854 98889 . - . gene_id "ST00807"; transcript_id "YLL023C"; -chrXII Steinmetz_2013 transcript 98986 100201 . - . gene_id "ST00808"; transcript_id "YLL022C"; -chrXII Steinmetz_2013 transcript 108059 109030 . - . gene_id "ST00809"; transcript_id "YLL018C-A"; -chrXII Steinmetz_2013 transcript 109766 111585 . - . gene_id "ST00810"; transcript_id "YLL018C"; -chrXII Steinmetz_2013 transcript 112192 114055 . - . gene_id "ST00811"; transcript_id "SUT686"; -chrXII Steinmetz_2013 transcript 121678 124956 . - . gene_id "ST00812"; transcript_id "YLL013C"; -chrXII Steinmetz_2013 transcript 128981 130855 . - . gene_id "ST00813"; transcript_id "YLL010C"; -chrXII Steinmetz_2013 transcript 131085 131466 . - . gene_id "ST00814"; transcript_id "YLL009C"; -chrXII Steinmetz_2013 transcript 134117 136386 . - . gene_id "ST00815"; transcript_id "YLL007C"; -chrXII Steinmetz_2013 transcript 151333 154008 . - . gene_id "ST00816"; transcript_id "YLR001C"; -chrXII Steinmetz_2013 transcript 154276 156372 . - . gene_id "ST00817"; transcript_id "YLR002C"; -chrXII Steinmetz_2013 transcript 156766 157748 . - . gene_id "ST00818"; transcript_id "YLR003C"; -chrXII Steinmetz_2013 transcript 157860 159560 . - . gene_id "ST00819"; transcript_id "YLR004C"; -chrXII Steinmetz_2013 transcript 161674 164081 . - . gene_id "ST00820"; transcript_id "YLR006C"; -chrXII Steinmetz_2013 transcript 165305 166181 . - . gene_id "ST00821"; transcript_id "YLR008C"; -chrXII Steinmetz_2013 transcript 167208 167813 . - . gene_id "ST00822"; transcript_id "YLR010C"; -chrXII Steinmetz_2013 transcript 176701 177458 . - . gene_id "ST00823"; transcript_id "YLR016C"; -chrXII Steinmetz_2013 transcript 178607 179662 . - . gene_id "ST00824"; transcript_id "YLR018C"; -chrXII Steinmetz_2013 transcript 181612 183444 . - . gene_id "ST00825"; transcript_id "YLR020C"; -chrXII Steinmetz_2013 transcript 184112 184927 . - . gene_id "ST00826"; transcript_id "YLR022C"; -chrXII Steinmetz_2013 transcript 185090 187251 . - . gene_id "ST00827"; transcript_id "YLR023C"; -chrXII Steinmetz_2013 transcript 195341 196587 . - . gene_id "ST00828"; transcript_id "YLR026C"; -chrXII Steinmetz_2013 transcript 196766 198113 . - . gene_id "ST00829"; transcript_id "YLR027C"; -chrXII Steinmetz_2013 transcript 199444 201468 . - . gene_id "ST00830"; transcript_id "YLR028C"; -chrXII Steinmetz_2013 transcript 201841 202613 . - . gene_id "ST00831"; transcript_id "YLR029C"; -chrXII Steinmetz_2013 transcript 203189 204730 . - . gene_id "ST00832"; transcript_id "SUT687"; -chrXII Steinmetz_2013 transcript 210352 212098 . - . gene_id "ST00833"; transcript_id "YLR034C"; -chrXII Steinmetz_2013 transcript 212103 214495 . - . gene_id "ST00834"; transcript_id "YLR035C"; -chrXII Steinmetz_2013 transcript 221324 222172 . - . gene_id "ST00835"; transcript_id "YLR036C"; -chrXII Steinmetz_2013 transcript 222534 223246 . - . gene_id "ST00836"; transcript_id "YLR037C"; -chrXII Steinmetz_2013 transcript 224604 225222 . - . gene_id "ST00837"; transcript_id "YLR038C"; -chrXII Steinmetz_2013 transcript 228758 229667 . - . gene_id "ST00838"; transcript_id "YLR040C"; -chrXII Steinmetz_2013 transcript 229860 230537 . - . gene_id "ST00839"; transcript_id "YLR042C"; -chrXII Steinmetz_2013 transcript 230530 231240 . - . gene_id "ST00840"; transcript_id "XUT_12R-85"; -chrXII Steinmetz_2013 transcript 231608 232040 . - . gene_id "ST00841"; transcript_id "YLR043C"; -chrXII Steinmetz_2013 transcript 232313 234111 . - . gene_id "ST00842"; transcript_id "YLR044C"; -chrXII Steinmetz_2013 transcript 234895 237722 . - . gene_id "ST00843"; transcript_id "YLR045C"; -chrXII Steinmetz_2013 transcript 237952 239258 . - . gene_id "ST00844"; transcript_id "YLR046C"; -chrXII Steinmetz_2013 transcript 238909 241655 . - . gene_id "ST00845"; transcript_id "YLR047C"; -chrXII Steinmetz_2013 transcript 243783 245363 . - . gene_id "ST00846"; transcript_id "YLR049C"; -chrXII Steinmetz_2013 transcript 245495 246093 . - . gene_id "ST00847"; transcript_id "YLR050C"; -chrXII Steinmetz_2013 transcript 246223 246998 . - . gene_id "ST00848"; transcript_id "YLR051C"; -chrXII Steinmetz_2013 transcript 247995 248448 . - . gene_id "ST00849"; transcript_id "YLR053C"; -chrXII Steinmetz_2013 transcript 251242 253119 . - . gene_id "ST00850"; transcript_id "YLR055C"; -chrXII Steinmetz_2013 transcript 257843 259440 . - . gene_id "ST00851"; transcript_id "YLR058C"; -chrXII Steinmetz_2013 transcript 259554 260550 . - . gene_id "ST00852"; transcript_id "YLR059C"; -chrXII Steinmetz_2013 transcript 264103 264644 . - . gene_id "ST00853"; transcript_id "XUT_12R-96"; -chrXII Steinmetz_2013 transcript 266261 266950 . - . gene_id "ST00854"; transcript_id "YLR065C"; -chrXII Steinmetz_2013 transcript 267734 270800 . - . gene_id "ST00855"; transcript_id "YLR067C"; -chrXII Steinmetz_2013 transcript 271495 273941 . - . gene_id "ST00856"; transcript_id "YLR069C"; -chrXII Steinmetz_2013 transcript 275238 278648 . - . gene_id "ST00857"; transcript_id "YLR071C"; -chrXII Steinmetz_2013 transcript 280940 281741 . - . gene_id "ST00858"; transcript_id "YLR073C"; -chrXII Steinmetz_2013 transcript 281889 282478 . - . gene_id "ST00859"; transcript_id "YLR074C"; -chrXII Steinmetz_2013 transcript 285659 286612 . - . gene_id "ST00860"; transcript_id "YLR078C"; -chrXII Steinmetz_2013 transcript 287698 288787 . - . gene_id "ST00861"; transcript_id "SUT689"; -chrXII Steinmetz_2013 transcript 289196 289634 . - . gene_id "ST00862"; transcript_id "SUT690"; -chrXII Steinmetz_2013 transcript 290047 291689 . - . gene_id "ST00863"; transcript_id "SUT692"; -chrXII Steinmetz_2013 transcript 292045 293609 . - . gene_id "ST00864"; transcript_id "YLR082C"; -chrXII Steinmetz_2013 transcript 293930 296258 . - . gene_id "ST00865"; transcript_id "YLR083C"; -chrXII Steinmetz_2013 transcript 296498 300302 . - . gene_id "ST00866"; transcript_id "YLR084C"; -chrXII Steinmetz_2013 transcript 300570 302022 . - . gene_id "ST00867"; transcript_id "YLR085C"; -chrXII Steinmetz_2013 transcript 318159 320319 . - . gene_id "ST00868"; transcript_id "YLR089C"; -chrXII Steinmetz_2013 transcript 323476 326064 . - . gene_id "ST00869"; transcript_id "SUT694"; -chrXII Steinmetz_2013 transcript 326300 327488 . - . gene_id "ST00870"; transcript_id "YLR093C"; -chrXII Steinmetz_2013 transcript 327611 329272 . - . gene_id "ST00871"; transcript_id "YLR094C"; -chrXII Steinmetz_2013 transcript 329619 332144 . - . gene_id "ST00872"; transcript_id "YLR095C"; -chrXII Steinmetz_2013 transcript 336122 337346 . - . gene_id "ST00873"; transcript_id "YLR097C"; -chrXII Steinmetz_2013 transcript 337382 339485 . - . gene_id "ST00874"; transcript_id "YLR098C"; -chrXII Steinmetz_2013 transcript 339698 341028 . - . gene_id "ST00875"; transcript_id "YLR099C"; -chrXII Steinmetz_2013 transcript 343911 346011 . - . gene_id "ST00876"; transcript_id "YLR103C"; -chrXII Steinmetz_2013 transcript 346958 348205 . - . gene_id "ST00877"; transcript_id "YLR105C"; -chrXII Steinmetz_2013 transcript 365699 366149 . - . gene_id "ST00878"; transcript_id "XUT_12R-126"; -chrXII Steinmetz_2013 transcript 366525 368174 . - . gene_id "ST00879"; transcript_id "YLR108C"; -chrXII Steinmetz_2013 transcript 369611 370141 . - . gene_id "ST00880"; transcript_id "YLR110C"; -chrXII Steinmetz_2013 transcript 370158 371074 . - . gene_id "ST00881"; transcript_id "SUT695"; -chrXII Steinmetz_2013 transcript 374547 377303 . - . gene_id "ST00882"; transcript_id "YLR114C"; -chrXII Steinmetz_2013 transcript 382347 384546 . - . gene_id "ST00883"; transcript_id "YLR117C"; -chrXII Steinmetz_2013 transcript 384622 385443 . - . gene_id "ST00884"; transcript_id "YLR118C"; -chrXII Steinmetz_2013 transcript 386100 388318 . - . gene_id "ST00885"; transcript_id "YLR120C"; -chrXII Steinmetz_2013 transcript 388601 390291 . - . gene_id "ST00886"; transcript_id "YLR121C"; -chrXII Steinmetz_2013 transcript 394534 395593 . - . gene_id "ST00887"; transcript_id "YLR126C"; -chrXII Steinmetz_2013 transcript 395598 398398 . - . gene_id "ST00888"; transcript_id "YLR127C"; -chrXII Steinmetz_2013 transcript 402751 404196 . - . gene_id "ST00889"; transcript_id "YLR130C"; -chrXII Steinmetz_2013 transcript 404436 406977 . - . gene_id "ST00890"; transcript_id "YLR131C"; -chrXII Steinmetz_2013 transcript 406916 408182 . - . gene_id "ST00891"; transcript_id "YLR132C"; -chrXII Steinmetz_2013 transcript 414421 415609 . - . gene_id "ST00892"; transcript_id "XUT_12R-141"; -chrXII Steinmetz_2013 transcript 415548 416694 . - . gene_id "ST00893"; transcript_id "YLR136C"; -chrXII Steinmetz_2013 transcript 421380 423495 . - . gene_id "ST00894"; transcript_id "YLR139C"; -chrXII Steinmetz_2013 transcript 423570 423896 . - . gene_id "ST00895"; transcript_id "XUT_12R-149"; -chrXII Steinmetz_2013 transcript 429389 432035 . - . gene_id "ST00896"; transcript_id "YLR144C"; -chrXII Steinmetz_2013 transcript 432737 433767 . - . gene_id "ST00897"; transcript_id "YLR146C"; -chrXII Steinmetz_2013 transcript 434050 434494 . - . gene_id "ST00898"; transcript_id "YLR147C"; -chrXII Steinmetz_2013 transcript 437442 439892 . - . gene_id "ST00899"; transcript_id "YLR149C"; -chrXII Steinmetz_2013 transcript 441449 442738 . - . gene_id "ST00900"; transcript_id "YLR151C"; -chrXII Steinmetz_2013 transcript 442860 444857 . - . gene_id "ST00901"; transcript_id "YLR152C"; -chrXII Steinmetz_2013 transcript 445263 447606 . - . gene_id "ST00902"; transcript_id "YLR153C"; -chrXII Steinmetz_2013 transcript 447915 448323 . - . gene_id "ST00903"; transcript_id "YLR154C"; -chrXII Steinmetz_2013 transcript 449087 449609 . - . gene_id "ST00904"; transcript_id "SUT696"; -chrXII Steinmetz_2013 transcript 491715 493282 . - . gene_id "ST00905"; transcript_id "YLR163C"; -chrXII Steinmetz_2013 transcript 494413 495266 . - . gene_id "ST00906"; transcript_id "YLR165C"; -chrXII Steinmetz_2013 transcript 495384 498080 . - . gene_id "ST00907"; transcript_id "YLR166C"; -chrXII Steinmetz_2013 transcript 498148 498697 . - . gene_id "ST00908"; transcript_id "SUT697"; -chrXII Steinmetz_2013 transcript 499453 500295 . - . gene_id "ST00909"; transcript_id "YLR168C"; -chrXII Steinmetz_2013 transcript 500325 501096 . - . gene_id "ST00910"; transcript_id "YLR170C"; -chrXII Steinmetz_2013 transcript 501191 502195 . - . gene_id "ST00911"; transcript_id "YLR172C"; -chrXII Steinmetz_2013 transcript 505545 505816 . - . gene_id "ST00912"; transcript_id "CUT739"; -chrXII Steinmetz_2013 transcript 513108 513846 . - . gene_id "ST00913"; transcript_id "YLR178C"; -chrXII Steinmetz_2013 transcript 514014 514790 . - . gene_id "ST00914"; transcript_id "YLR179C"; -chrXII Steinmetz_2013 transcript 516577 517737 . - . gene_id "ST00915"; transcript_id "YLR181C"; -chrXII Steinmetz_2013 transcript 520393 522059 . - . gene_id "ST00916"; transcript_id "YLR183C"; -chrXII Steinmetz_2013 transcript 530668 534453 . - . gene_id "ST00917"; transcript_id "YLR189C"; -chrXII Steinmetz_2013 transcript 538558 539638 . - . gene_id "ST00918"; transcript_id "YLR192C"; -chrXII Steinmetz_2013 transcript 539843 540589 . - . gene_id "ST00919"; transcript_id "YLR193C"; -chrXII Steinmetz_2013 transcript 540742 541587 . - . gene_id "ST00920"; transcript_id "YLR194C"; -chrXII Steinmetz_2013 transcript 541866 543322 . - . gene_id "ST00921"; transcript_id "YLR195C"; -chrXII Steinmetz_2013 transcript 547706 548816 . - . gene_id "ST00922"; transcript_id "YLR199C"; -chrXII Steinmetz_2013 transcript 550639 552016 . - . gene_id "ST00923"; transcript_id "YLR203C"; -chrXII Steinmetz_2013 transcript 552663 553717 . - . gene_id "ST00924"; transcript_id "YLR205C"; -chrXII Steinmetz_2013 transcript 560612 561738 . - . gene_id "ST00925"; transcript_id "YLR209C"; -chrXII Steinmetz_2013 transcript 563429 564581 . - . gene_id "ST00926"; transcript_id "YLR211C"; -chrXII Steinmetz_2013 transcript 564713 566296 . - . gene_id "ST00927"; transcript_id "YLR212C"; -chrXII Steinmetz_2013 transcript 566510 567947 . - . gene_id "ST00928"; transcript_id "YLR213C"; -chrXII Steinmetz_2013 transcript 570671 571900 . - . gene_id "ST00929"; transcript_id "YLR215C"; -chrXII Steinmetz_2013 transcript 571984 573242 . - . gene_id "ST00930"; transcript_id "YLR216C"; -chrXII Steinmetz_2013 transcript 578160 579069 . - . gene_id "ST00931"; transcript_id "YLR221C"; -chrXII Steinmetz_2013 transcript 579220 581790 . - . gene_id "ST00932"; transcript_id "YLR222C"; -chrXII Steinmetz_2013 transcript 587565 588986 . - . gene_id "ST00933"; transcript_id "YLR225C"; -chrXII Steinmetz_2013 transcript 590414 592381 . - . gene_id "ST00934"; transcript_id "YLR227C"; -chrXII Steinmetz_2013 transcript 599800 602666 . - . gene_id "ST00935"; transcript_id "YLR228C"; -chrXII Steinmetz_2013 transcript 603372 603978 . - . gene_id "ST00936"; transcript_id "XUT_12R-207"; -chrXII Steinmetz_2013 transcript 603372 603868 . - . gene_id "ST00937"; transcript_id "SUT698"; -chrXII Steinmetz_2013 transcript 604122 604996 . - . gene_id "ST00938"; transcript_id "YLR229C"; -chrXII Steinmetz_2013 transcript 605676 607132 . - . gene_id "ST00939"; transcript_id "YLR231C"; -chrXII Steinmetz_2013 transcript 607143 609570 . - . gene_id "ST00940"; transcript_id "YLR233C"; -chrXII Steinmetz_2013 transcript 614215 614562 . - . gene_id "ST00941"; transcript_id "SUT699"; -chrXII Steinmetz_2013 transcript 616226 617333 . - . gene_id "ST00942"; transcript_id "YLR239C"; -chrXII Steinmetz_2013 transcript 622885 623986 . - . gene_id "ST00943"; transcript_id "YLR242C"; -chrXII Steinmetz_2013 transcript 625112 626349 . - . gene_id "ST00944"; transcript_id "YLR244C"; -chrXII Steinmetz_2013 transcript 626388 626948 . - . gene_id "ST00945"; transcript_id "YLR245C"; -chrXII Steinmetz_2013 transcript 636114 636383 . - . gene_id "ST00946"; transcript_id "SUT700"; -chrXII Steinmetz_2013 transcript 641431 642381 . - . gene_id "ST00947"; transcript_id "SUT701"; -chrXII Steinmetz_2013 transcript 644327 645074 . - . gene_id "ST00948"; transcript_id "YLR254C"; -chrXII Steinmetz_2013 transcript 645335 645982 . - . gene_id "ST00949"; transcript_id "YLR255C"; -chrXII Steinmetz_2013 transcript 649287 650818 . - . gene_id "ST00950"; transcript_id "XUT_12R-235"; -chrXII Steinmetz_2013 transcript 657059 657805 . - . gene_id "ST00951"; transcript_id "XUT_12R-237"; -chrXII Steinmetz_2013 transcript 657594 658129 . - . gene_id "ST00952"; transcript_id "CUT742"; -chrXII Steinmetz_2013 transcript 660409 661264 . - . gene_id "ST00953"; transcript_id "XUT_12R-239"; -chrXII Steinmetz_2013 transcript 663190 665036 . - . gene_id "ST00954"; transcript_id "YLR259C"; -chrXII Steinmetz_2013 transcript 669373 669684 . - . gene_id "ST00955"; transcript_id "YLR262C-A"; -chrXII Steinmetz_2013 transcript 672625 672838 . - . gene_id "ST00956"; transcript_id "CUT745"; -chrXII Steinmetz_2013 transcript 675586 677747 . - . gene_id "ST00957"; transcript_id "YLR266C"; -chrXII Steinmetz_2013 transcript 682351 682645 . - . gene_id "ST00958"; transcript_id "XUT_12R-250"; -chrXII Steinmetz_2013 transcript 683591 687254 . - . gene_id "ST00959"; transcript_id "YLR272C"; -chrXII Steinmetz_2013 transcript 688924 691247 . - . gene_id "ST00960"; transcript_id "YLR273C"; -chrXII Steinmetz_2013 transcript 694971 696926 . - . gene_id "ST00961"; transcript_id "YLR276C"; -chrXII Steinmetz_2013 transcript 697093 699643 . - . gene_id "ST00962"; transcript_id "YLR277C"; -chrXII Steinmetz_2013 transcript 706113 707083 . - . gene_id "ST00963"; transcript_id "YLR284C"; -chrXII Steinmetz_2013 transcript 708404 710367 . - . gene_id "ST00964"; transcript_id "YLR286C"; -chrXII Steinmetz_2013 transcript 710763 712125 . - . gene_id "ST00965"; transcript_id "YLR287C"; -chrXII Steinmetz_2013 transcript 712327 713177 . - . gene_id "ST00966"; transcript_id "YLR287C-A"; -chrXII Steinmetz_2013 transcript 713319 714922 . - . gene_id "ST00967"; transcript_id "YLR288C"; -chrXII Steinmetz_2013 transcript 717031 718000 . - . gene_id "ST00968"; transcript_id "YLR290C"; -chrXII Steinmetz_2013 transcript 718166 719494 . - . gene_id "ST00969"; transcript_id "YLR291C"; -chrXII Steinmetz_2013 transcript 719634 720389 . - . gene_id "ST00970"; transcript_id "YLR292C"; -chrXII Steinmetz_2013 transcript 720670 721467 . - . gene_id "ST00971"; transcript_id "YLR293C"; -chrXII Steinmetz_2013 transcript 724645 725421 . - . gene_id "ST00972"; transcript_id "YLR298C"; -chrXII Steinmetz_2013 transcript 734965 737587 . - . gene_id "ST00973"; transcript_id "YLR304C"; -chrXII Steinmetz_2013 transcript 748979 751782 . - . gene_id "ST00974"; transcript_id "YLR309C"; -chrXII Steinmetz_2013 transcript 760240 762387 . - . gene_id "ST00975"; transcript_id "YLR313C"; -chrXII Steinmetz_2013 transcript 762471 764202 . - . gene_id "ST00976"; transcript_id "YLR314C"; -chrXII Steinmetz_2013 transcript 765198 766382 . - . gene_id "ST00977"; transcript_id "YLR316C"; -chrXII Steinmetz_2013 transcript 769136 771755 . - . gene_id "ST00978"; transcript_id "YLR319C"; -chrXII Steinmetz_2013 transcript 776257 777879 . - . gene_id "ST00979"; transcript_id "YLR321C"; -chrXII Steinmetz_2013 transcript 777999 778979 . - . gene_id "ST00980"; transcript_id "YLR323C"; -chrXII Steinmetz_2013 transcript 780902 781400 . - . gene_id "ST00981"; transcript_id "YLR325C"; -chrXII Steinmetz_2013 transcript 782955 783461 . - . gene_id "ST00982"; transcript_id "YLR327C"; -chrXII Steinmetz_2013 transcript 786598 787356 . - . gene_id "ST00983"; transcript_id "CUT746"; -chrXII Steinmetz_2013 transcript 789665 789871 . - . gene_id "ST00984"; transcript_id "SUT706"; -chrXII Steinmetz_2013 transcript 795465 796367 . - . gene_id "ST00985"; transcript_id "YLR333C"; -chrXII Steinmetz_2013 transcript 799641 802437 . - . gene_id "ST00986"; transcript_id "YLR336C"; -chrXII Steinmetz_2013 transcript 802528 805171 . - . gene_id "ST00987"; transcript_id "YLR337C"; -chrXII Steinmetz_2013 transcript 806810 808638 . - . gene_id "ST00988"; transcript_id "SUT707"; -chrXII Steinmetz_2013 transcript 822134 822653 . - . gene_id "ST00989"; transcript_id "YLR346C"; -chrXII Steinmetz_2013 transcript 823497 826533 . - . gene_id "ST00990"; transcript_id "YLR347C"; -chrXII Steinmetz_2013 transcript 826907 827900 . - . gene_id "ST00991"; transcript_id "YLR348C"; -chrXII Steinmetz_2013 transcript 827932 828332 . - . gene_id "ST00992"; transcript_id "SUT708"; -chrXII Steinmetz_2013 transcript 829362 830367 . - . gene_id "ST00993"; transcript_id "YLR351C"; -chrXII Steinmetz_2013 transcript 833340 833668 . - . gene_id "ST00994"; transcript_id "CUT751"; -chrXII Steinmetz_2013 transcript 836187 837398 . - . gene_id "ST00995"; transcript_id "YLR354C"; -chrXII Steinmetz_2013 transcript 837848 839332 . - . gene_id "ST00996"; transcript_id "YLR355C"; -chrXII Steinmetz_2013 transcript 847023 849145 . - . gene_id "ST00997"; transcript_id "YLR361C"; -chrXII Steinmetz_2013 transcript 849214 849682 . - . gene_id "ST00998"; transcript_id "YLR361C-A"; -chrXII Steinmetz_2013 transcript 852059 853194 . - . gene_id "ST00999"; transcript_id "YLR363C"; -chrXII Steinmetz_2013 transcript 854730 855456 . - . gene_id "ST01000"; transcript_id "XUT_12R-313"; -chrXII Steinmetz_2013 transcript 861550 862294 . - . gene_id "ST01001"; transcript_id "YLR370C"; -chrXII Steinmetz_2013 transcript 868571 871383 . - . gene_id "ST01002"; transcript_id "YLR373C"; -chrXII Steinmetz_2013 transcript 872731 873588 . - . gene_id "ST01003"; transcript_id "YLR376C"; -chrXII Steinmetz_2013 transcript 875580 877383 . - . gene_id "ST01004"; transcript_id "YLR378C"; -chrXII Steinmetz_2013 transcript 881992 884833 . - . gene_id "ST01005"; transcript_id "YLR382C"; -chrXII Steinmetz_2013 transcript 896300 897749 . - . gene_id "ST01006"; transcript_id "YLR387C"; -chrXII Steinmetz_2013 transcript 899436 902660 . - . gene_id "ST01007"; transcript_id "YLR389C"; -chrXII Steinmetz_2013 transcript 904657 906476 . - . gene_id "ST01008"; transcript_id "YLR392C"; -chrXII Steinmetz_2013 transcript 909435 910008 . - . gene_id "ST01009"; transcript_id "YLR395C"; -chrXII Steinmetz_2013 transcript 910198 912367 . - . gene_id "ST01010"; transcript_id "YLR396C"; -chrXII Steinmetz_2013 transcript 912414 914924 . - . gene_id "ST01011"; transcript_id "YLR397C"; -chrXII Steinmetz_2013 transcript 915084 919059 . - . gene_id "ST01012"; transcript_id "YLR398C"; -chrXII Steinmetz_2013 transcript 919201 921642 . - . gene_id "ST01013"; transcript_id "YLR399C"; -chrXII Steinmetz_2013 transcript 922397 924496 . - . gene_id "ST01014"; transcript_id "YLR401C"; -chrXII Steinmetz_2013 transcript 921652 922377 . - . gene_id "ST01015"; transcript_id "SUT709"; -chrXII Steinmetz_2013 transcript 928302 928585 . - . gene_id "ST01016"; transcript_id "SUT710"; -chrXII Steinmetz_2013 transcript 930878 931781 . - . gene_id "ST01017"; transcript_id "YLR406C"; -chrXII Steinmetz_2013 transcript 933801 934265 . - . gene_id "ST01018"; transcript_id "YLR408C"; -chrXII Steinmetz_2013 transcript 934363 937266 . - . gene_id "ST01019"; transcript_id "YLR409C"; -chrXII Steinmetz_2013 transcript 949136 950781 . - . gene_id "ST01020"; transcript_id "YLR412C-A"; -chrXII Steinmetz_2013 transcript 953251 954244 . - . gene_id "ST01021"; transcript_id "YLR414C"; -chrXII Steinmetz_2013 transcript 956583 958166 . - . gene_id "ST01022"; transcript_id "YLR418C"; -chrXII Steinmetz_2013 transcript 963123 963531 . - . gene_id "ST01023"; transcript_id "CUT754"; -chrXII Steinmetz_2013 transcript 964883 965597 . - . gene_id "ST01024"; transcript_id "YLR421C"; -chrXII Steinmetz_2013 transcript 971694 973203 . - . gene_id "ST01025"; transcript_id "YLR423C"; -chrXII Steinmetz_2013 transcript 990487 991034 . - . gene_id "ST01026"; transcript_id "YLR428C"; -chrXII Steinmetz_2013 transcript 1000134 1001860 . - . gene_id "ST01027"; transcript_id "YLR431C"; -chrXII Steinmetz_2013 transcript 1004069 1006021 . - . gene_id "ST01028"; transcript_id "YLR433C"; -chrXII Steinmetz_2013 transcript 1007401 1011329 . - . gene_id "ST01029"; transcript_id "YLR436C"; -chrXII Steinmetz_2013 transcript 1011473 1012092 . - . gene_id "ST01030"; transcript_id "YLR437C"; -chrXII Steinmetz_2013 transcript 1013824 1014240 . - . gene_id "ST01031"; transcript_id "YLR438C-A"; -chrXII Steinmetz_2013 transcript 1015453 1017741 . - . gene_id "ST01032"; transcript_id "YLR440C"; -chrXII Steinmetz_2013 transcript 1017924 1018936 . - . gene_id "ST01033"; transcript_id "YLR441C"; -chrXII Steinmetz_2013 transcript 1019216 1022324 . - . gene_id "ST01034"; transcript_id "YLR442C"; -chrXII Steinmetz_2013 transcript 1025501 1026681 . - . gene_id "ST01035"; transcript_id "SUT711"; -chrXII Steinmetz_2013 transcript 1026704 1027938 . - . gene_id "ST01036"; transcript_id "YLR447C"; -chrXII Steinmetz_2013 transcript 1029960 1030598 . - . gene_id "ST01037"; transcript_id "SUT712"; -chrXII Steinmetz_2013 transcript 1033745 1035822 . - . gene_id "ST01038"; transcript_id "SUT713"; -chrXII Steinmetz_2013 transcript 1033911 1035822 . - . gene_id "ST01039"; transcript_id "XUT_12R-387"; -chrXII Steinmetz_2013 transcript 1039083 1041538 . - . gene_id "ST01040"; transcript_id "YLR452C"; -chrXII Steinmetz_2013 transcript 1055634 1056792 . - . gene_id "ST01041"; transcript_id "YLR457C"; -chrXII Steinmetz_2013 transcript 1059700 1060933 . - . gene_id "ST01042"; transcript_id "YLR460C"; -chrXII Steinmetz_2013 transcript 16188 16415 . + . gene_id "ST01043"; transcript_id "XUT_12F-1"; -chrXII Steinmetz_2013 transcript 17940 19760 . + . gene_id "ST01044"; transcript_id "YLL061W"; -chrXII Steinmetz_2013 transcript 23509 25383 . + . gene_id "ST01045"; transcript_id "YLL058W"; -chrXII Steinmetz_2013 transcript 26233 27272 . + . gene_id "ST01046"; transcript_id "SUT245"; -chrXII Steinmetz_2013 transcript 29805 31740 . + . gene_id "ST01047"; transcript_id "YLL055W"; -chrXII Steinmetz_2013 transcript 49900 52113 . + . gene_id "ST01048"; transcript_id "YLL043W"; -chrXII Steinmetz_2013 transcript 65633 67427 . + . gene_id "ST01049"; transcript_id "YLL037W"; -chrXII Steinmetz_2013 transcript 68478 70614 . + . gene_id "ST01050"; transcript_id "YLL035W"; -chrXII Steinmetz_2013 transcript 73403 74633 . + . gene_id "ST01051"; transcript_id "YLL033W"; -chrXII Steinmetz_2013 transcript 81358 83814 . + . gene_id "ST01052"; transcript_id "YLL029W"; -chrXII Steinmetz_2013 transcript 84670 86955 . + . gene_id "ST01053"; transcript_id "YLL028W"; -chrXII Steinmetz_2013 transcript 87197 88261 . + . gene_id "ST01054"; transcript_id "YLL027W"; -chrXII Steinmetz_2013 transcript 88567 91386 . + . gene_id "ST01055"; transcript_id "YLL026W"; -chrXII Steinmetz_2013 transcript 94712 95357 . + . gene_id "ST01056"; transcript_id "YLL025W"; -chrXII Steinmetz_2013 transcript 97728 98904 . + . gene_id "ST01057"; transcript_id "CUT246"; -chrXII Steinmetz_2013 transcript 116313 121176 . + . gene_id "ST01058"; transcript_id "YLL015W"; -chrXII Steinmetz_2013 transcript 121304 121790 . + . gene_id "ST01059"; transcript_id "YLL014W"; -chrXII Steinmetz_2013 transcript 125477 127342 . + . gene_id "ST01060"; transcript_id "YLL012W"; -chrXII Steinmetz_2013 transcript 127512 129073 . + . gene_id "ST01061"; transcript_id "YLL011W"; -chrXII Steinmetz_2013 transcript 131699 134098 . + . gene_id "ST01062"; transcript_id "YLL008W"; -chrXII Steinmetz_2013 transcript 136548 138319 . + . gene_id "ST01063"; transcript_id "YLL006W"; -chrXII Steinmetz_2013 transcript 141067 142998 . + . gene_id "ST01064"; transcript_id "YLL004W"; -chrXII Steinmetz_2013 transcript 143191 146101 . + . gene_id "ST01065"; transcript_id "YLL003W"; -chrXII Steinmetz_2013 transcript 146267 147675 . + . gene_id "ST01066"; transcript_id "YLL002W"; -chrXII Steinmetz_2013 transcript 147827 150330 . + . gene_id "ST01067"; transcript_id "YLL001W"; -chrXII Steinmetz_2013 transcript 151102 153419 . + . gene_id "ST01068"; transcript_id "SUT246"; -chrXII Steinmetz_2013 transcript 158057 159659 . + . gene_id "ST01069"; transcript_id "SUT247"; -chrXII Steinmetz_2013 transcript 160012 161651 . + . gene_id "ST01070"; transcript_id "YLR005W"; -chrXII Steinmetz_2013 transcript 164378 165465 . + . gene_id "ST01071"; transcript_id "YLR007W"; -chrXII Steinmetz_2013 transcript 166397 167264 . + . gene_id "ST01072"; transcript_id "YLR009W"; -chrXII Steinmetz_2013 transcript 169026 169972 . + . gene_id "ST01073"; transcript_id "YLR011W"; -chrXII Steinmetz_2013 transcript 175174 176916 . + . gene_id "ST01074"; transcript_id "YLR015W"; -chrXII Steinmetz_2013 transcript 177600 178701 . + . gene_id "ST01075"; transcript_id "YLR017W"; -chrXII Steinmetz_2013 transcript 179982 181735 . + . gene_id "ST01076"; transcript_id "YLR019W"; -chrXII Steinmetz_2013 transcript 183576 184210 . + . gene_id "ST01077"; transcript_id "YLR021W"; -chrXII Steinmetz_2013 transcript 187654 188743 . + . gene_id "ST01078"; transcript_id "CUT250"; -chrXII Steinmetz_2013 transcript 193345 194289 . + . gene_id "ST01079"; transcript_id "XUT_12F-70"; -chrXII Steinmetz_2013 transcript 193699 194333 . + . gene_id "ST01080"; transcript_id "CUT251"; -chrXII Steinmetz_2013 transcript 194378 195304 . + . gene_id "ST01081"; transcript_id "YLR025W"; -chrXII Steinmetz_2013 transcript 196844 197337 . + . gene_id "ST01082"; transcript_id "CUT252"; -chrXII Steinmetz_2013 transcript 201720 201975 . + . gene_id "ST01083"; transcript_id "XUT_12F-77"; -chrXII Steinmetz_2013 transcript 204948 208552 . + . gene_id "ST01084"; transcript_id "YLR032W"; -chrXII Steinmetz_2013 transcript 208708 210467 . + . gene_id "ST01085"; transcript_id "YLR033W"; -chrXII Steinmetz_2013 transcript 222323 222616 . + . gene_id "ST01086"; transcript_id "SUT249"; -chrXII Steinmetz_2013 transcript 223961 224691 . + . gene_id "ST01087"; transcript_id "XUT_12F-85"; -chrXII Steinmetz_2013 transcript 224158 224691 . + . gene_id "ST01088"; transcript_id "SUT250"; -chrXII Steinmetz_2013 transcript 224873 225294 . + . gene_id "ST01089"; transcript_id "XUT_12F-86"; -chrXII Steinmetz_2013 transcript 228917 230645 . + . gene_id "ST01090"; transcript_id "YLR041W"; -chrXII Steinmetz_2013 transcript 242190 243568 . + . gene_id "ST01091"; transcript_id "YLR048W"; -chrXII Steinmetz_2013 transcript 245561 246289 . + . gene_id "ST01092"; transcript_id "SUT253"; -chrXII Steinmetz_2013 transcript 247155 248641 . + . gene_id "ST01093"; transcript_id "YLR052W"; -chrXII Steinmetz_2013 transcript 248061 248608 . + . gene_id "ST01094"; transcript_id "SUT254"; -chrXII Steinmetz_2013 transcript 248771 249356 . + . gene_id "ST01095"; transcript_id "CUT254"; -chrXII Steinmetz_2013 transcript 253783 255085 . + . gene_id "ST01096"; transcript_id "YLR056W"; -chrXII Steinmetz_2013 transcript 255252 257945 . + . gene_id "ST01097"; transcript_id "YLR057W"; -chrXII Steinmetz_2013 transcript 259912 260876 . + . gene_id "ST01098"; transcript_id "SUT255"; -chrXII Steinmetz_2013 transcript 260942 262865 . + . gene_id "ST01099"; transcript_id "YLR060W"; -chrXII Steinmetz_2013 transcript 263173 264039 . + . gene_id "ST01100"; transcript_id "YLR061W"; -chrXII Steinmetz_2013 transcript 265400 266361 . + . gene_id "ST01101"; transcript_id "YLR064W"; -chrXII Steinmetz_2013 transcript 267134 267816 . + . gene_id "ST01102"; transcript_id "YLR066W"; -chrXII Steinmetz_2013 transcript 270983 271572 . + . gene_id "ST01103"; transcript_id "YLR068W"; -chrXII Steinmetz_2013 transcript 278842 280996 . + . gene_id "ST01104"; transcript_id "YLR072W"; -chrXII Steinmetz_2013 transcript 281313 281789 . + . gene_id "ST01105"; transcript_id "XUT_12F-113"; -chrXII Steinmetz_2013 transcript 282906 283733 . + . gene_id "ST01106"; transcript_id "YLR075W"; -chrXII Steinmetz_2013 transcript 283845 285794 . + . gene_id "ST01107"; transcript_id "YLR077W"; -chrXII Steinmetz_2013 transcript 286780 287828 . + . gene_id "ST01108"; transcript_id "YLR079W"; -chrXII Steinmetz_2013 transcript 287898 289331 . + . gene_id "ST01109"; transcript_id "YLR080W"; -chrXII Steinmetz_2013 transcript 290160 292024 . + . gene_id "ST01110"; transcript_id "YLR081W"; -chrXII Steinmetz_2013 transcript 302187 306866 . + . gene_id "ST01111"; transcript_id "YLR086W"; -chrXII Steinmetz_2013 transcript 316075 318121 . + . gene_id "ST01112"; transcript_id "YLR088W"; -chrXII Steinmetz_2013 transcript 320679 322178 . + . gene_id "ST01113"; transcript_id "YLR090W"; -chrXII Steinmetz_2013 transcript 322265 323442 . + . gene_id "ST01114"; transcript_id "YLR091W"; -chrXII Steinmetz_2013 transcript 329687 331322 . + . gene_id "ST01115"; transcript_id "SUT260"; -chrXII Steinmetz_2013 transcript 341291 341649 . + . gene_id "ST01116"; transcript_id "YLR099W-A"; -chrXII Steinmetz_2013 transcript 341783 342933 . + . gene_id "ST01117"; transcript_id "YLR100W"; -chrXII Steinmetz_2013 transcript 346545 347041 . + . gene_id "ST01118"; transcript_id "YLR104W"; -chrXII Steinmetz_2013 transcript 364100 365434 . + . gene_id "ST01119"; transcript_id "YLR107W"; -chrXII Steinmetz_2013 transcript 368744 369379 . + . gene_id "ST01120"; transcript_id "YLR109W"; -chrXII Steinmetz_2013 transcript 370748 371365 . + . gene_id "ST01121"; transcript_id "YLR112W"; -chrXII Steinmetz_2013 transcript 371446 373061 . + . gene_id "ST01122"; transcript_id "YLR113W"; -chrXII Steinmetz_2013 transcript 377985 380712 . + . gene_id "ST01123"; transcript_id "YLR115W"; -chrXII Steinmetz_2013 transcript 380818 382454 . + . gene_id "ST01124"; transcript_id "YLR116W"; -chrXII Steinmetz_2013 transcript 388580 388789 . + . gene_id "ST01125"; transcript_id "YLR120W-A"; -chrXII Steinmetz_2013 transcript 390717 391301 . + . gene_id "ST01126"; transcript_id "XUT_12F-154"; -chrXII Steinmetz_2013 transcript 393472 394790 . + . gene_id "ST01127"; transcript_id "YLR125W"; -chrXII Steinmetz_2013 transcript 395800 396435 . + . gene_id "ST01128"; transcript_id "SUT263"; -chrXII Steinmetz_2013 transcript 395800 396691 . + . gene_id "ST01129"; transcript_id "XUT_12F-157"; -chrXII Steinmetz_2013 transcript 398486 399649 . + . gene_id "ST01130"; transcript_id "YLR128W"; -chrXII Steinmetz_2013 transcript 399601 402630 . + . gene_id "ST01131"; transcript_id "YLR129W"; -chrXII Steinmetz_2013 transcript 408421 410646 . + . gene_id "ST01132"; transcript_id "YLR133W"; -chrXII Steinmetz_2013 transcript 410680 412537 . + . gene_id "ST01133"; transcript_id "YLR134W"; -chrXII Steinmetz_2013 transcript 413217 415680 . + . gene_id "ST01134"; transcript_id "YLR135W"; -chrXII Steinmetz_2013 transcript 415803 416352 . + . gene_id "ST01135"; transcript_id "CUT260"; -chrXII Steinmetz_2013 transcript 416999 418164 . + . gene_id "ST01136"; transcript_id "YLR137W"; -chrXII Steinmetz_2013 transcript 418338 421458 . + . gene_id "ST01137"; transcript_id "YLR138W"; -chrXII Steinmetz_2013 transcript 425144 426662 . + . gene_id "ST01138"; transcript_id "YLR142W"; -chrXII Steinmetz_2013 transcript 427318 429470 . + . gene_id "ST01139"; transcript_id "YLR143W"; -chrXII Steinmetz_2013 transcript 432159 432835 . + . gene_id "ST01140"; transcript_id "YLR145W"; -chrXII Steinmetz_2013 transcript 433843 434144 . + . gene_id "ST01141"; transcript_id "YLR146W-A"; -chrXII Steinmetz_2013 transcript 434603 437531 . + . gene_id "ST01142"; transcript_id "YLR148W"; -chrXII Steinmetz_2013 transcript 440441 441415 . + . gene_id "ST01143"; transcript_id "YLR150W"; -chrXII Steinmetz_2013 transcript 490885 491791 . + . gene_id "ST01144"; transcript_id "SUT265"; -chrXII Steinmetz_2013 transcript 490885 492689 . + . gene_id "ST01145"; transcript_id "XUT_12F-191"; -chrXII Steinmetz_2013 transcript 493529 494490 . + . gene_id "ST01146"; transcript_id "YLR164W"; -chrXII Steinmetz_2013 transcript 498232 498875 . + . gene_id "ST01147"; transcript_id "SUT267"; -chrXII Steinmetz_2013 transcript 498890 499453 . + . gene_id "ST01148"; transcript_id "YLR167W"; -chrXII Steinmetz_2013 transcript 502355 504341 . + . gene_id "ST01149"; transcript_id "YLR173W"; -chrXII Steinmetz_2013 transcript 504304 505912 . + . gene_id "ST01150"; transcript_id "YLR174W"; -chrXII Steinmetz_2013 transcript 506105 507708 . + . gene_id "ST01151"; transcript_id "YLR175W"; -chrXII Steinmetz_2013 transcript 511005 513012 . + . gene_id "ST01152"; transcript_id "YLR177W"; -chrXII Steinmetz_2013 transcript 515206 516658 . + . gene_id "ST01153"; transcript_id "YLR180W"; -chrXII Steinmetz_2013 transcript 517907 520472 . + . gene_id "ST01154"; transcript_id "YLR182W"; -chrXII Steinmetz_2013 transcript 522642 523385 . + . gene_id "ST01155"; transcript_id "YLR185W"; -chrXII Steinmetz_2013 transcript 523575 524450 . + . gene_id "ST01156"; transcript_id "YLR186W"; -chrXII Steinmetz_2013 transcript 524634 528050 . + . gene_id "ST01157"; transcript_id "YLR187W"; -chrXII Steinmetz_2013 transcript 528227 530525 . + . gene_id "ST01158"; transcript_id "YLR188W"; -chrXII Steinmetz_2013 transcript 534894 537095 . + . gene_id "ST01159"; transcript_id "YLR190W"; -chrXII Steinmetz_2013 transcript 537223 538506 . + . gene_id "ST01160"; transcript_id "YLR191W"; -chrXII Steinmetz_2013 transcript 540780 541782 . + . gene_id "ST01161"; transcript_id "SUT270"; -chrXII Steinmetz_2013 transcript 543894 545824 . + . gene_id "ST01162"; transcript_id "YLR196W"; -chrXII Steinmetz_2013 transcript 546073 547797 . + . gene_id "ST01163"; transcript_id "YLR197W"; -chrXII Steinmetz_2013 transcript 548984 549483 . + . gene_id "ST01164"; transcript_id "YLR200W"; -chrXII Steinmetz_2013 transcript 552240 552751 . + . gene_id "ST01165"; transcript_id "YLR204W"; -chrXII Steinmetz_2013 transcript 556779 559347 . + . gene_id "ST01166"; transcript_id "YLR207W"; -chrXII Steinmetz_2013 transcript 559461 560714 . + . gene_id "ST01167"; transcript_id "YLR208W"; -chrXII Steinmetz_2013 transcript 561943 563563 . + . gene_id "ST01168"; transcript_id "YLR210W"; -chrXII Steinmetz_2013 transcript 566825 568660 . + . gene_id "ST01169"; transcript_id "SUT272"; -chrXII Steinmetz_2013 transcript 568518 570758 . + . gene_id "ST01170"; transcript_id "YLR214W"; -chrXII Steinmetz_2013 transcript 572837 573475 . + . gene_id "ST01171"; transcript_id "YLR217W"; -chrXII Steinmetz_2013 transcript 573956 576496 . + . gene_id "ST01172"; transcript_id "YLR219W"; -chrXII Steinmetz_2013 transcript 576672 577974 . + . gene_id "ST01173"; transcript_id "YLR220W"; -chrXII Steinmetz_2013 transcript 586317 587658 . + . gene_id "ST01174"; transcript_id "YLR224W"; -chrXII Steinmetz_2013 transcript 589305 591052 . + . gene_id "ST01175"; transcript_id "YLR226W"; -chrXII Steinmetz_2013 transcript 591322 591746 . + . gene_id "ST01176"; transcript_id "SUT273"; -chrXII Steinmetz_2013 transcript 603882 604204 . + . gene_id "ST01177"; transcript_id "SUT275"; -chrXII Steinmetz_2013 transcript 607361 609039 . + . gene_id "ST01178"; transcript_id "SUT276"; -chrXII Steinmetz_2013 transcript 609743 612158 . + . gene_id "ST01179"; transcript_id "YLR234W"; -chrXII Steinmetz_2013 transcript 612300 614349 . + . gene_id "ST01180"; transcript_id "YLR237W"; -chrXII Steinmetz_2013 transcript 614677 616307 . + . gene_id "ST01181"; transcript_id "YLR238W"; -chrXII Steinmetz_2013 transcript 617485 620329 . + . gene_id "ST01182"; transcript_id "YLR240W"; -chrXII Steinmetz_2013 transcript 620418 622889 . + . gene_id "ST01183"; transcript_id "YLR241W"; -chrXII Steinmetz_2013 transcript 624125 625191 . + . gene_id "ST01184"; transcript_id "YLR243W"; -chrXII Steinmetz_2013 transcript 627117 628267 . + . gene_id "ST01185"; transcript_id "YLR246W"; -chrXII Steinmetz_2013 transcript 634203 636216 . + . gene_id "ST01186"; transcript_id "YLR248W"; -chrXII Steinmetz_2013 transcript 636740 640084 . + . gene_id "ST01187"; transcript_id "YLR249W"; -chrXII Steinmetz_2013 transcript 640273 641135 . + . gene_id "ST01188"; transcript_id "YLR250W"; -chrXII Steinmetz_2013 transcript 642554 644428 . + . gene_id "ST01189"; transcript_id "YLR253W"; -chrXII Steinmetz_2013 transcript 658622 659887 . + . gene_id "ST01190"; transcript_id "YLR257W"; -chrXII Steinmetz_2013 transcript 658295 658666 . + . gene_id "ST01191"; transcript_id "SUT278"; -chrXII Steinmetz_2013 transcript 660452 660663 . + . gene_id "ST01192"; transcript_id "CUT266"; -chrXII Steinmetz_2013 transcript 660649 663192 . + . gene_id "ST01193"; transcript_id "YLR258W"; -chrXII Steinmetz_2013 transcript 665716 668075 . + . gene_id "ST01194"; transcript_id "YLR260W"; -chrXII Steinmetz_2013 transcript 669160 669479 . + . gene_id "ST01195"; transcript_id "SUT279"; -chrXII Steinmetz_2013 transcript 669842 672883 . + . gene_id "ST01196"; transcript_id "YLR263W"; -chrXII Steinmetz_2013 transcript 673109 673980 . + . gene_id "ST01197"; transcript_id "YLR264W"; -chrXII Steinmetz_2013 transcript 674236 674863 . + . gene_id "ST01198"; transcript_id "XUT_12F-270"; -chrXII Steinmetz_2013 transcript 678144 680021 . + . gene_id "ST01199"; transcript_id "YLR267W"; -chrXII Steinmetz_2013 transcript 680152 680965 . + . gene_id "ST01200"; transcript_id "YLR268W"; -chrXII Steinmetz_2013 transcript 681094 682451 . + . gene_id "ST01201"; transcript_id "YLR270W"; -chrXII Steinmetz_2013 transcript 682384 683664 . + . gene_id "ST01202"; transcript_id "YLR271W"; -chrXII Steinmetz_2013 transcript 691535 694014 . + . gene_id "ST01203"; transcript_id "YLR274W"; -chrXII Steinmetz_2013 transcript 694323 695061 . + . gene_id "ST01204"; transcript_id "YLR275W"; -chrXII Steinmetz_2013 transcript 699846 701207 . + . gene_id "ST01205"; transcript_id "SUT280"; -chrXII Steinmetz_2013 transcript 705185 706181 . + . gene_id "ST01206"; transcript_id "YLR283W"; -chrXII Steinmetz_2013 transcript 707354 708253 . + . gene_id "ST01207"; transcript_id "YLR285W"; -chrXII Steinmetz_2013 transcript 708416 709095 . + . gene_id "ST01208"; transcript_id "YLR286W-A"; -chrXII Steinmetz_2013 transcript 715059 717162 . + . gene_id "ST01209"; transcript_id "YLR289W"; -chrXII Steinmetz_2013 transcript 722685 723687 . + . gene_id "ST01210"; transcript_id "YLR296W"; -chrXII Steinmetz_2013 transcript 723945 724729 . + . gene_id "ST01211"; transcript_id "YLR297W"; -chrXII Steinmetz_2013 transcript 725876 728180 . + . gene_id "ST01212"; transcript_id "YLR299W"; -chrXII Steinmetz_2013 transcript 728857 730553 . + . gene_id "ST01213"; transcript_id "YLR300W"; -chrXII Steinmetz_2013 transcript 730795 731687 . + . gene_id "ST01214"; transcript_id "YLR301W"; -chrXII Steinmetz_2013 transcript 732501 733984 . + . gene_id "ST01215"; transcript_id "YLR303W"; -chrXII Steinmetz_2013 transcript 744069 744917 . + . gene_id "ST01216"; transcript_id "YLR306W"; -chrXII Steinmetz_2013 transcript 745543 746623 . + . gene_id "ST01217"; transcript_id "YLR307W"; -chrXII Steinmetz_2013 transcript 759468 760363 . + . gene_id "ST01218"; transcript_id "YLR312W-A"; -chrXII Steinmetz_2013 transcript 764754 765409 . + . gene_id "ST01219"; transcript_id "YLR315W"; -chrXII Steinmetz_2013 transcript 765361 766125 . + . gene_id "ST01220"; transcript_id "YLR317W"; -chrXII Steinmetz_2013 transcript 779148 780842 . + . gene_id "ST01221"; transcript_id "YLR324W"; -chrXII Steinmetz_2013 transcript 782024 783024 . + . gene_id "ST01222"; transcript_id "YLR326W"; -chrXII Steinmetz_2013 transcript 784702 786289 . + . gene_id "ST01223"; transcript_id "YLR328W"; -chrXII Steinmetz_2013 transcript 787652 789824 . + . gene_id "ST01224"; transcript_id "YLR330W"; -chrXII Steinmetz_2013 transcript 790305 791995 . + . gene_id "ST01225"; transcript_id "YLR332W"; -chrXII Steinmetz_2013 transcript 797407 799688 . + . gene_id "ST01226"; transcript_id "YLR335W"; -chrXII Steinmetz_2013 transcript 805827 806910 . + . gene_id "ST01227"; transcript_id "YLR340W"; -chrXII Steinmetz_2013 transcript 819295 820242 . + . gene_id "ST01228"; transcript_id "YLR344W"; -chrXII Steinmetz_2013 transcript 820440 822146 . + . gene_id "ST01229"; transcript_id "YLR345W"; -chrXII Steinmetz_2013 transcript 828683 829513 . + . gene_id "ST01230"; transcript_id "YLR350W"; -chrXII Steinmetz_2013 transcript 831001 833636 . + . gene_id "ST01231"; transcript_id "YLR352W"; -chrXII Steinmetz_2013 transcript 833871 836315 . + . gene_id "ST01232"; transcript_id "YLR353W"; -chrXII Steinmetz_2013 transcript 840265 841025 . + . gene_id "ST01233"; transcript_id "YLR356W"; -chrXII Steinmetz_2013 transcript 841275 844191 . + . gene_id "ST01234"; transcript_id "YLR357W"; -chrXII Steinmetz_2013 transcript 844175 845864 . + . gene_id "ST01235"; transcript_id "YLR359W"; -chrXII Steinmetz_2013 transcript 846029 847561 . + . gene_id "ST01236"; transcript_id "YLR360W"; -chrXII Steinmetz_2013 transcript 849801 852132 . + . gene_id "ST01237"; transcript_id "YLR362W"; -chrXII Steinmetz_2013 transcript 853451 853863 . + . gene_id "ST01238"; transcript_id "YLR363W-A"; -chrXII Steinmetz_2013 transcript 854012 854444 . + . gene_id "ST01239"; transcript_id "YLR364W"; -chrXII Steinmetz_2013 transcript 855855 857371 . + . gene_id "ST01240"; transcript_id "YLR367W"; -chrXII Steinmetz_2013 transcript 857486 859379 . + . gene_id "ST01241"; transcript_id "YLR368W"; -chrXII Steinmetz_2013 transcript 867210 868493 . + . gene_id "ST01242"; transcript_id "YLR372W"; -chrXII Steinmetz_2013 transcript 871665 872820 . + . gene_id "ST01243"; transcript_id "YLR375W"; -chrXII Steinmetz_2013 transcript 873801 874960 . + . gene_id "ST01244"; transcript_id "SUT281"; -chrXII Steinmetz_2013 transcript 878189 879643 . + . gene_id "ST01245"; transcript_id "YLR380W"; -chrXII Steinmetz_2013 transcript 879672 881941 . + . gene_id "ST01246"; transcript_id "YLR381W"; -chrXII Steinmetz_2013 transcript 885206 888704 . + . gene_id "ST01247"; transcript_id "YLR383W"; -chrXII Steinmetz_2013 transcript 893628 896380 . + . gene_id "ST01248"; transcript_id "YLR386W"; -chrXII Steinmetz_2013 transcript 898121 898914 . + . gene_id "ST01249"; transcript_id "YLR388W"; -chrXII Steinmetz_2013 transcript 902852 903480 . + . gene_id "ST01250"; transcript_id "YLR390W"; -chrXII Steinmetz_2013 transcript 903676 904661 . + . gene_id "ST01251"; transcript_id "YLR390W-A"; -chrXII Steinmetz_2013 transcript 906701 907111 . + . gene_id "ST01252"; transcript_id "CUT275"; -chrXII Steinmetz_2013 transcript 910277 911333 . + . gene_id "ST01253"; transcript_id "SUT282"; -chrXII Steinmetz_2013 transcript 921941 922558 . + . gene_id "ST01254"; transcript_id "YLR400W"; -chrXII Steinmetz_2013 transcript 928706 929712 . + . gene_id "ST01255"; transcript_id "YLR404W"; -chrXII Steinmetz_2013 transcript 929782 931040 . + . gene_id "ST01256"; transcript_id "YLR405W"; -chrXII Steinmetz_2013 transcript 932723 933859 . + . gene_id "ST01257"; transcript_id "YLR407W"; -chrXII Steinmetz_2013 transcript 947209 948147 . + . gene_id "ST01258"; transcript_id "YLR411W"; -chrXII Steinmetz_2013 transcript 948368 949264 . + . gene_id "ST01259"; transcript_id "YLR412W"; -chrXII Steinmetz_2013 transcript 951106 953319 . + . gene_id "ST01260"; transcript_id "YLR413W"; -chrXII Steinmetz_2013 transcript 954915 956841 . + . gene_id "ST01261"; transcript_id "YLR417W"; -chrXII Steinmetz_2013 transcript 958367 962817 . + . gene_id "ST01262"; transcript_id "YLR419W"; -chrXII Steinmetz_2013 transcript 963765 964955 . + . gene_id "ST01263"; transcript_id "YLR420W"; -chrXII Steinmetz_2013 transcript 973365 975628 . + . gene_id "ST01264"; transcript_id "YLR424W"; -chrXII Steinmetz_2013 transcript 987037 988191 . + . gene_id "ST01265"; transcript_id "YLR426W"; -chrXII Steinmetz_2013 transcript 988334 990612 . + . gene_id "ST01266"; transcript_id "YLR427W"; -chrXII Steinmetz_2013 transcript 990746 992904 . + . gene_id "ST01267"; transcript_id "YLR429W"; -chrXII Steinmetz_2013 transcript 1002441 1004227 . + . gene_id "ST01268"; transcript_id "YLR432W"; -chrXII Steinmetz_2013 transcript 1006299 1007145 . + . gene_id "ST01269"; transcript_id "YLR435W"; -chrXII Steinmetz_2013 transcript 1012466 1013884 . + . gene_id "ST01270"; transcript_id "YLR438W"; -chrXII Steinmetz_2013 transcript 1014441 1015589 . + . gene_id "ST01271"; transcript_id "YLR439W"; -chrXII Steinmetz_2013 transcript 1022488 1024072 . + . gene_id "ST01272"; transcript_id "YLR443W"; -chrXII Steinmetz_2013 transcript 1025128 1026536 . + . gene_id "ST01273"; transcript_id "YLR446W"; -chrXII Steinmetz_2013 transcript 1028838 1029925 . + . gene_id "ST01274"; transcript_id "YLR448W"; -chrXII Steinmetz_2013 transcript 1030156 1030592 . + . gene_id "ST01275"; transcript_id "SUT284"; -chrXII Steinmetz_2013 transcript 1030795 1032101 . + . gene_id "ST01276"; transcript_id "YLR449W"; -chrXII Steinmetz_2013 transcript 1032444 1035853 . + . gene_id "ST01277"; transcript_id "YLR450W"; -chrXII Steinmetz_2013 transcript 1036015 1038944 . + . gene_id "ST01278"; transcript_id "YLR451W"; -chrXII Steinmetz_2013 transcript 1041744 1042365 . + . gene_id "ST01279"; transcript_id "CUT278"; -chrXII Steinmetz_2013 transcript 1042409 1043065 . + . gene_id "ST01280"; transcript_id "CUT279"; -chrXII Steinmetz_2013 transcript 1053393 1054954 . + . gene_id "ST01281"; transcript_id "YLR455W"; -chrXII Steinmetz_2013 transcript 1055058 1055752 . + . gene_id "ST01282"; transcript_id "YLR456W"; -chrXII Steinmetz_2013 transcript 1057306 1058575 . + . gene_id "ST01283"; transcript_id "YLR459W"; -chrXIII Steinmetz_2013 transcript 9222 9907 . - . gene_id "ST01284"; transcript_id "SUT714"; -chrXIII Steinmetz_2013 transcript 11389 13275 . - . gene_id "ST01285"; transcript_id "YML130C"; -chrXIII Steinmetz_2013 transcript 14345 14763 . - . gene_id "ST01286"; transcript_id "YML129C"; -chrXIII Steinmetz_2013 transcript 14948 16800 . - . gene_id "ST01287"; transcript_id "YML128C"; -chrXIII Steinmetz_2013 transcript 20685 21722 . - . gene_id "ST01288"; transcript_id "YML125C"; -chrXIII Steinmetz_2013 transcript 21905 23702 . - . gene_id "ST01289"; transcript_id "YML124C"; -chrXIII Steinmetz_2013 transcript 23888 25839 . - . gene_id "ST01290"; transcript_id "YML123C"; -chrXIII Steinmetz_2013 transcript 27902 29867 . - . gene_id "ST01291"; transcript_id "YML120C"; -chrXIII Steinmetz_2013 transcript 29891 30296 . - . gene_id "ST01292"; transcript_id "SUT715"; -chrXIII Steinmetz_2013 transcript 39950 41837 . - . gene_id "ST01293"; transcript_id "YML115C"; -chrXIII Steinmetz_2013 transcript 41991 43754 . - . gene_id "ST01294"; transcript_id "YML114C"; -chrXIII Steinmetz_2013 transcript 45930 46571 . - . gene_id "ST01295"; transcript_id "XUT_13R-20"; -chrXIII Steinmetz_2013 transcript 45930 46498 . - . gene_id "ST01296"; transcript_id "SUT716"; -chrXIII Steinmetz_2013 transcript 49851 50981 . - . gene_id "ST01297"; transcript_id "YML110C"; -chrXIII Steinmetz_2013 transcript 55236 56282 . - . gene_id "ST01298"; transcript_id "YML107C"; -chrXIII Steinmetz_2013 transcript 57756 58718 . - . gene_id "ST01299"; transcript_id "YML105C"; -chrXIII Steinmetz_2013 transcript 58879 62358 . - . gene_id "ST01300"; transcript_id "YML104C"; -chrXIII Steinmetz_2013 transcript 74231 77063 . - . gene_id "ST01301"; transcript_id "YML099C"; -chrXIII Steinmetz_2013 transcript 78250 79739 . - . gene_id "ST01302"; transcript_id "YML097C"; -chrXIII Steinmetz_2013 transcript 80488 82154 . - . gene_id "ST01303"; transcript_id "YML095C"; -chrXIII Steinmetz_2013 transcript 85879 86760 . - . gene_id "ST01304"; transcript_id "YML092C"; -chrXIII Steinmetz_2013 transcript 90806 91581 . - . gene_id "ST01305"; transcript_id "YML089C"; -chrXIII Steinmetz_2013 transcript 94341 95379 . - . gene_id "ST01306"; transcript_id "YML087C"; -chrXIII Steinmetz_2013 transcript 95675 97527 . - . gene_id "ST01307"; transcript_id "YML086C"; -chrXIII Steinmetz_2013 transcript 97768 99451 . - . gene_id "ST01308"; transcript_id "YML085C"; -chrXIII Steinmetz_2013 transcript 103875 104221 . - . gene_id "ST01309"; transcript_id "YML081C-A"; -chrXIII Steinmetz_2013 transcript 110420 110850 . - . gene_id "ST01310"; transcript_id "CUT761"; -chrXIII Steinmetz_2013 transcript 110899 111589 . - . gene_id "ST01311"; transcript_id "XUT_13R-47"; -chrXIII Steinmetz_2013 transcript 112382 115363 . - . gene_id "ST01312"; transcript_id "YML076C"; -chrXIII Steinmetz_2013 transcript 115582 118976 . - . gene_id "ST01313"; transcript_id "YML075C"; -chrXIII Steinmetz_2013 transcript 119988 121360 . - . gene_id "ST01314"; transcript_id "YML074C"; -chrXIII Steinmetz_2013 transcript 121328 122973 . - . gene_id "ST01315"; transcript_id "SUT717"; -chrXIII Steinmetz_2013 transcript 123150 124197 . - . gene_id "ST01316"; transcript_id "YML073C"; -chrXIII Steinmetz_2013 transcript 124579 129550 . - . gene_id "ST01317"; transcript_id "YML072C"; -chrXIII Steinmetz_2013 transcript 129705 131648 . - . gene_id "ST01318"; transcript_id "YML071C"; -chrXIII Steinmetz_2013 transcript 139031 140234 . - . gene_id "ST01319"; transcript_id "YML067C"; -chrXIII Steinmetz_2013 transcript 144942 145962 . - . gene_id "ST01320"; transcript_id "YML064C"; -chrXIII Steinmetz_2013 transcript 147425 148715 . - . gene_id "ST01321"; transcript_id "YML062C"; -chrXIII Steinmetz_2013 transcript 148883 151682 . - . gene_id "ST01322"; transcript_id "YML061C"; -chrXIII Steinmetz_2013 transcript 162106 164230 . - . gene_id "ST01323"; transcript_id "YML056C"; -chrXIII Steinmetz_2013 transcript 165445 167351 . - . gene_id "ST01324"; transcript_id "YML054C"; -chrXIII Steinmetz_2013 transcript 169071 169837 . - . gene_id "ST01325"; transcript_id "YML053C"; -chrXIII Steinmetz_2013 transcript 169831 171247 . - . gene_id "ST01326"; transcript_id "SUT719"; -chrXIII Steinmetz_2013 transcript 169831 170657 . - . gene_id "ST01327"; transcript_id "XUT_13R-69"; -chrXIII Steinmetz_2013 transcript 190105 191929 . - . gene_id "ST01328"; transcript_id "YML043C"; -chrXIII Steinmetz_2013 transcript 194830 195782 . - . gene_id "ST01329"; transcript_id "YML041C"; -chrXIII Steinmetz_2013 transcript 202560 204244 . - . gene_id "ST01330"; transcript_id "YML038C"; -chrXIII Steinmetz_2013 transcript 206263 209024 . - . gene_id "ST01331"; transcript_id "YML035C"; -chrXIII Steinmetz_2013 transcript 212216 213970 . - . gene_id "ST01332"; transcript_id "YML032C"; -chrXIII Steinmetz_2013 transcript 219197 219838 . - . gene_id "ST01333"; transcript_id "SUT720"; -chrXIII Steinmetz_2013 transcript 222778 223850 . - . gene_id "ST01334"; transcript_id "YML026C"; -chrXIII Steinmetz_2013 transcript 224300 225407 . - . gene_id "ST01335"; transcript_id "YML025C"; -chrXIII Steinmetz_2013 transcript 226945 228708 . - . gene_id "ST01336"; transcript_id "YML023C"; -chrXIII Steinmetz_2013 transcript 229564 230830 . - . gene_id "ST01337"; transcript_id "YML021C"; -chrXIII Steinmetz_2013 transcript 233212 233642 . - . gene_id "ST01338"; transcript_id "XUT_13R-97"; -chrXIII Steinmetz_2013 transcript 234643 236088 . - . gene_id "ST01339"; transcript_id "YML018C"; -chrXIII Steinmetz_2013 transcript 241868 243092 . - . gene_id "ST01340"; transcript_id "YML015C"; -chrXIII Steinmetz_2013 transcript 246781 247456 . - . gene_id "ST01341"; transcript_id "YML011C"; -chrXIII Steinmetz_2013 transcript 251162 251558 . - . gene_id "ST01342"; transcript_id "YML009C"; -chrXIII Steinmetz_2013 transcript 251750 253024 . - . gene_id "ST01343"; transcript_id "YML008C"; -chrXIII Steinmetz_2013 transcript 252999 253293 . - . gene_id "ST01344"; transcript_id "YML007C-A"; -chrXIII Steinmetz_2013 transcript 256018 258570 . - . gene_id "ST01345"; transcript_id "YML006C"; -chrXIII Steinmetz_2013 transcript 258693 258945 . - . gene_id "ST01346"; transcript_id "SUT721"; -chrXIII Steinmetz_2013 transcript 258683 258992 . - . gene_id "ST01347"; transcript_id "XUT_13R-108"; -chrXIII Steinmetz_2013 transcript 259354 260089 . - . gene_id "ST01348"; transcript_id "SUT722"; -chrXIII Steinmetz_2013 transcript 261569 262700 . - . gene_id "ST01349"; transcript_id "YML004C"; -chrXIII Steinmetz_2013 transcript 268860 271166 . - . gene_id "ST01350"; transcript_id "YMR001C"; -chrXIII Steinmetz_2013 transcript 271671 271933 . - . gene_id "ST01351"; transcript_id "SUT725"; -chrXIII Steinmetz_2013 transcript 277460 279739 . - . gene_id "ST01352"; transcript_id "YMR006C"; -chrXIII Steinmetz_2013 transcript 280251 282692 . - . gene_id "ST01353"; transcript_id "YMR008C"; -chrXIII Steinmetz_2013 transcript 282674 283614 . - . gene_id "ST01354"; transcript_id "SUT726"; -chrXIII Steinmetz_2013 transcript 286639 287164 . - . gene_id "ST01355"; transcript_id "CUT764"; -chrXIII Steinmetz_2013 transcript 288033 289791 . - . gene_id "ST01356"; transcript_id "SUT727"; -chrXIII Steinmetz_2013 transcript 300679 302539 . - . gene_id "ST01357"; transcript_id "YMR015C"; -chrXIII Steinmetz_2013 transcript 303101 305817 . - . gene_id "ST01358"; transcript_id "YMR016C"; -chrXIII Steinmetz_2013 transcript 311445 311996 . - . gene_id "ST01359"; transcript_id "SUT728"; -chrXIII Steinmetz_2013 transcript 311771 312038 . - . gene_id "ST01360"; transcript_id "XUT_13R-134"; -chrXIII Steinmetz_2013 transcript 316889 318441 . - . gene_id "ST01361"; transcript_id "YMR021C"; -chrXIII Steinmetz_2013 transcript 319381 321039 . - . gene_id "ST01362"; transcript_id "YMR023C"; -chrXIII Steinmetz_2013 transcript 324147 325551 . - . gene_id "ST01363"; transcript_id "YMR026C"; -chrXIII Steinmetz_2013 transcript 328574 330270 . - . gene_id "ST01364"; transcript_id "YMR029C"; -chrXIII Steinmetz_2013 transcript 332006 334822 . - . gene_id "ST01365"; transcript_id "YMR031C"; -chrXIII Steinmetz_2013 transcript 339311 340930 . - . gene_id "ST01366"; transcript_id "YMR034C"; -chrXIII Steinmetz_2013 transcript 341718 343562 . - . gene_id "ST01367"; transcript_id "YMR036C"; -chrXIII Steinmetz_2013 transcript 344163 346946 . - . gene_id "ST01368"; transcript_id "YMR037C"; -chrXIII Steinmetz_2013 transcript 347384 348290 . - . gene_id "ST01369"; transcript_id "YMR038C"; -chrXIII Steinmetz_2013 transcript 348467 349622 . - . gene_id "ST01370"; transcript_id "YMR039C"; -chrXIII Steinmetz_2013 transcript 350845 351991 . - . gene_id "ST01371"; transcript_id "YMR041C"; -chrXIII Steinmetz_2013 transcript 352436 352991 . - . gene_id "ST01372"; transcript_id "CUT767"; -chrXIII Steinmetz_2013 transcript 352443 352998 . - . gene_id "ST01373"; transcript_id "XUT_13R-153"; -chrXIII Steinmetz_2013 transcript 354745 355101 . - . gene_id "ST01374"; transcript_id "CUT768"; -chrXIII Steinmetz_2013 transcript 363279 366780 . - . gene_id "ST01375"; transcript_id "YMR047C"; -chrXIII Steinmetz_2013 transcript 368034 370551 . - . gene_id "ST01376"; transcript_id "YMR049C"; -chrXIII Steinmetz_2013 transcript 386022 387050 . - . gene_id "ST01377"; transcript_id "YMR055C"; -chrXIII Steinmetz_2013 transcript 387190 388325 . - . gene_id "ST01378"; transcript_id "YMR056C"; -chrXIII Steinmetz_2013 transcript 391491 392536 . - . gene_id "ST01379"; transcript_id "YMR060C"; -chrXIII Steinmetz_2013 transcript 394943 396394 . - . gene_id "ST01380"; transcript_id "YMR062C"; -chrXIII Steinmetz_2013 transcript 404201 405600 . - . gene_id "ST01381"; transcript_id "YMR067C"; -chrXIII Steinmetz_2013 transcript 410684 411345 . - . gene_id "ST01382"; transcript_id "YMR071C"; -chrXIII Steinmetz_2013 transcript 412172 412900 . - . gene_id "ST01383"; transcript_id "YMR073C"; -chrXIII Steinmetz_2013 transcript 412965 413485 . - . gene_id "ST01384"; transcript_id "YMR074C"; -chrXIII Steinmetz_2013 transcript 416057 420119 . - . gene_id "ST01385"; transcript_id "YMR076C"; -chrXIII Steinmetz_2013 transcript 421286 422150 . - . gene_id "ST01386"; transcript_id "YMR077C"; -chrXIII Steinmetz_2013 transcript 422399 424741 . - . gene_id "ST01387"; transcript_id "YMR078C"; -chrXIII Steinmetz_2013 transcript 426290 429706 . - . gene_id "ST01388"; transcript_id "YMR080C"; -chrXIII Steinmetz_2013 transcript 429829 431242 . - . gene_id "ST01389"; transcript_id "YMR081C"; -chrXIII Steinmetz_2013 transcript 431225 431462 . - . gene_id "ST01390"; transcript_id "CUT772"; -chrXIII Steinmetz_2013 transcript 433029 434174 . - . gene_id "ST01391"; transcript_id "XUT_13R-196"; -chrXIII Steinmetz_2013 transcript 440616 443152 . - . gene_id "ST01392"; transcript_id "YMR086C-A"; -chrXIII Steinmetz_2013 transcript 443300 445219 . - . gene_id "ST01393"; transcript_id "YMR088C"; -chrXIII Steinmetz_2013 transcript 445430 448285 . - . gene_id "ST01394"; transcript_id "YMR089C"; -chrXIII Steinmetz_2013 transcript 449991 451406 . - . gene_id "ST01395"; transcript_id "YMR091C"; -chrXIII Steinmetz_2013 transcript 451560 453561 . - . gene_id "ST01396"; transcript_id "YMR092C"; -chrXIII Steinmetz_2013 transcript 459374 460550 . - . gene_id "ST01397"; transcript_id "YMR097C"; -chrXIII Steinmetz_2013 transcript 460697 462691 . - . gene_id "ST01398"; transcript_id "YMR098C"; -chrXIII Steinmetz_2013 transcript 463845 464850 . - . gene_id "ST01399"; transcript_id "YMR099C"; -chrXIII Steinmetz_2013 transcript 465186 465702 . - . gene_id "ST01400"; transcript_id "SUT730"; -chrXIII Steinmetz_2013 transcript 469729 472682 . - . gene_id "ST01401"; transcript_id "YMR102C"; -chrXIII Steinmetz_2013 transcript 472848 473275 . - . gene_id "ST01402"; transcript_id "YMR103C"; -chrXIII Steinmetz_2013 transcript 475747 477665 . - . gene_id "ST01403"; transcript_id "YMR105C"; -chrXIII Steinmetz_2013 transcript 478027 480239 . - . gene_id "ST01404"; transcript_id "YMR106C"; -chrXIII Steinmetz_2013 transcript 490242 492017 . - . gene_id "ST01405"; transcript_id "YMR110C"; -chrXIII Steinmetz_2013 transcript 492223 493874 . - . gene_id "ST01406"; transcript_id "YMR111C"; -chrXIII Steinmetz_2013 transcript 493979 494607 . - . gene_id "ST01407"; transcript_id "YMR112C"; -chrXIII Steinmetz_2013 transcript 496273 497467 . - . gene_id "ST01408"; transcript_id "YMR114C"; -chrXIII Steinmetz_2013 transcript 499302 500717 . - . gene_id "ST01409"; transcript_id "YMR116C"; -chrXIII Steinmetz_2013 transcript 501045 501913 . - . gene_id "ST01410"; transcript_id "YMR117C"; -chrXIII Steinmetz_2013 transcript 507339 509323 . - . gene_id "ST01411"; transcript_id "YMR120C"; -chrXIII Steinmetz_2013 transcript 509682 510383 . - . gene_id "ST01412"; transcript_id "YMR121C"; -chrXIII Steinmetz_2013 transcript 510684 511754 . - . gene_id "ST01413"; transcript_id "YMR122C"; -chrXIII Steinmetz_2013 transcript 520665 521978 . - . gene_id "ST01414"; transcript_id "YMR126C"; -chrXIII Steinmetz_2013 transcript 522121 523437 . - . gene_id "ST01415"; transcript_id "YMR127C"; -chrXIII Steinmetz_2013 transcript 531788 532253 . - . gene_id "ST01416"; transcript_id "XUT_13R-232"; -chrXIII Steinmetz_2013 transcript 533102 534743 . - . gene_id "ST01417"; transcript_id "YMR131C"; -chrXIII Steinmetz_2013 transcript 534722 535657 . - . gene_id "ST01418"; transcript_id "YMR132C"; -chrXIII Steinmetz_2013 transcript 535964 537037 . - . gene_id "ST01419"; transcript_id "SUT732"; -chrXIII Steinmetz_2013 transcript 535964 537294 . - . gene_id "ST01420"; transcript_id "XUT_13R-234"; -chrXIII Steinmetz_2013 transcript 538579 540109 . - . gene_id "ST01421"; transcript_id "YMR135C"; -chrXIII Steinmetz_2013 transcript 542851 545003 . - . gene_id "ST01422"; transcript_id "YMR137C"; -chrXIII Steinmetz_2013 transcript 550108 551227 . - . gene_id "ST01423"; transcript_id "YMR142C"; -chrXIII Steinmetz_2013 transcript 554594 556678 . - . gene_id "ST01424"; transcript_id "YMR145C"; -chrXIII Steinmetz_2013 transcript 557396 558562 . - . gene_id "ST01425"; transcript_id "YMR146C"; -chrXIII Steinmetz_2013 transcript 564206 565951 . - . gene_id "ST01426"; transcript_id "YMR153C-A"; -chrXIII Steinmetz_2013 transcript 570231 571028 . - . gene_id "ST01427"; transcript_id "YMR156C"; -chrXIII Steinmetz_2013 transcript 571152 572044 . - . gene_id "ST01428"; transcript_id "YMR157C"; -chrXIII Steinmetz_2013 transcript 573107 574403 . - . gene_id "ST01429"; transcript_id "YMR158C-A"; -chrXIII Steinmetz_2013 transcript 584207 586533 . - . gene_id "ST01430"; transcript_id "YMR163C"; -chrXIII Steinmetz_2013 transcript 589934 592747 . - . gene_id "ST01431"; transcript_id "YMR165C"; -chrXIII Steinmetz_2013 transcript 593125 594726 . - . gene_id "ST01432"; transcript_id "YMR166C"; -chrXIII Steinmetz_2013 transcript 596539 599194 . - . gene_id "ST01433"; transcript_id "YMR168C"; -chrXIII Steinmetz_2013 transcript 599297 601194 . - . gene_id "ST01434"; transcript_id "YMR169C"; -chrXIII Steinmetz_2013 transcript 601423 603108 . - . gene_id "ST01435"; transcript_id "YMR170C"; -chrXIII Steinmetz_2013 transcript 603610 605711 . - . gene_id "ST01436"; transcript_id "YMR171C"; -chrXIII Steinmetz_2013 transcript 609997 610399 . - . gene_id "ST01437"; transcript_id "YMR174C"; -chrXIII Steinmetz_2013 transcript 610423 610969 . - . gene_id "ST01438"; transcript_id "XUT_13R-275"; -chrXIII Steinmetz_2013 transcript 618195 619459 . - . gene_id "ST01439"; transcript_id "XUT_13R-279"; -chrXIII Steinmetz_2013 transcript 618851 619482 . - . gene_id "ST01440"; transcript_id "SUT734"; -chrXIII Steinmetz_2013 transcript 622107 623238 . - . gene_id "ST01441"; transcript_id "YMR180C"; -chrXIII Steinmetz_2013 transcript 623328 624258 . - . gene_id "ST01442"; transcript_id "YMR181C"; -chrXIII Steinmetz_2013 transcript 624090 625280 . - . gene_id "ST01443"; transcript_id "YMR182C"; -chrXIII Steinmetz_2013 transcript 626677 627885 . - . gene_id "ST01444"; transcript_id "YMR183C"; -chrXIII Steinmetz_2013 transcript 634458 636006 . - . gene_id "ST01445"; transcript_id "YMR187C"; -chrXIII Steinmetz_2013 transcript 636160 637078 . - . gene_id "ST01446"; transcript_id "YMR188C"; -chrXIII Steinmetz_2013 transcript 652547 652891 . - . gene_id "ST01447"; transcript_id "YMR194C-B"; -chrXIII Steinmetz_2013 transcript 654405 654720 . - . gene_id "ST01448"; transcript_id "XUT_13R-293"; -chrXIII Steinmetz_2013 transcript 656287 658024 . - . gene_id "ST01449"; transcript_id "XUT_13R-297"; -chrXIII Steinmetz_2013 transcript 656287 658820 . - . gene_id "ST01450"; transcript_id "CUT784"; -chrXIII Steinmetz_2013 transcript 658369 659241 . - . gene_id "ST01451"; transcript_id "YMR197C"; -chrXIII Steinmetz_2013 transcript 665573 667059 . - . gene_id "ST01452"; transcript_id "YMR201C"; -chrXIII Steinmetz_2013 transcript 669759 671366 . - . gene_id "ST01453"; transcript_id "YMR204C"; -chrXIII Steinmetz_2013 transcript 671775 674821 . - . gene_id "ST01454"; transcript_id "YMR205C"; -chrXIII Steinmetz_2013 transcript 676054 677051 . - . gene_id "ST01455"; transcript_id "XUT_13R-313"; -chrXIII Steinmetz_2013 transcript 685807 687317 . - . gene_id "ST01456"; transcript_id "YMR209C"; -chrXIII Steinmetz_2013 transcript 687446 688784 . - . gene_id "ST01457"; transcript_id "XUT_13R-316"; -chrXIII Steinmetz_2013 transcript 687640 688838 . - . gene_id "ST01458"; transcript_id "SUT736"; -chrXIII Steinmetz_2013 transcript 690577 693185 . - . gene_id "ST01459"; transcript_id "YMR212C"; -chrXIII Steinmetz_2013 transcript 698615 701217 . - . gene_id "ST01460"; transcript_id "YMR216C"; -chrXIII Steinmetz_2013 transcript 703497 706919 . - . gene_id "ST01461"; transcript_id "YMR218C"; -chrXIII Steinmetz_2013 transcript 713847 715458 . - . gene_id "ST01462"; transcript_id "YMR221C"; -chrXIII Steinmetz_2013 transcript 715554 716349 . - . gene_id "ST01463"; transcript_id "YMR222C"; -chrXIII Steinmetz_2013 transcript 718338 720703 . - . gene_id "ST01464"; transcript_id "YMR224C"; -chrXIII Steinmetz_2013 transcript 720825 721424 . - . gene_id "ST01465"; transcript_id "YMR225C"; -chrXIII Steinmetz_2013 transcript 721532 722446 . - . gene_id "ST01466"; transcript_id "YMR226C"; -chrXIII Steinmetz_2013 transcript 722501 724438 . - . gene_id "ST01467"; transcript_id "YMR227C"; -chrXIII Steinmetz_2013 transcript 731466 732081 . - . gene_id "ST01468"; transcript_id "SUT737"; -chrXIII Steinmetz_2013 transcript 741324 742779 . - . gene_id "ST01469"; transcript_id "YMR235C"; -chrXIII Steinmetz_2013 transcript 748113 749727 . - . gene_id "ST01470"; transcript_id "YMR239C"; -chrXIII Steinmetz_2013 transcript 749878 751296 . - . gene_id "ST01471"; transcript_id "YMR240C"; -chrXIII Steinmetz_2013 transcript 753118 754241 . - . gene_id "ST01472"; transcript_id "YMR242C"; -chrXIII Steinmetz_2013 transcript 754644 756277 . - . gene_id "ST01473"; transcript_id "YMR243C"; -chrXIII Steinmetz_2013 transcript 758329 758898 . - . gene_id "ST01474"; transcript_id "YMR244C-A"; -chrXIII Steinmetz_2013 transcript 772764 773526 . - . gene_id "ST01475"; transcript_id "SUT738"; -chrXIII Steinmetz_2013 transcript 773608 773976 . - . gene_id "ST01476"; transcript_id "CUT790"; -chrXIII Steinmetz_2013 transcript 775132 775762 . - . gene_id "ST01477"; transcript_id "YMR252C"; -chrXIII Steinmetz_2013 transcript 775920 777241 . - . gene_id "ST01478"; transcript_id "YMR253C"; -chrXIII Steinmetz_2013 transcript 778778 779156 . - . gene_id "ST01479"; transcript_id "YMR256C"; -chrXIII Steinmetz_2013 transcript 779393 782419 . - . gene_id "ST01480"; transcript_id "YMR257C"; -chrXIII Steinmetz_2013 transcript 782587 784320 . - . gene_id "ST01481"; transcript_id "YMR258C"; -chrXIII Steinmetz_2013 transcript 784571 788942 . - . gene_id "ST01482"; transcript_id "YMR259C"; -chrXIII Steinmetz_2013 transcript 789218 789864 . - . gene_id "ST01483"; transcript_id "YMR260C"; -chrXIII Steinmetz_2013 transcript 790060 793539 . - . gene_id "ST01484"; transcript_id "YMR261C"; -chrXIII Steinmetz_2013 transcript 796459 797928 . - . gene_id "ST01485"; transcript_id "YMR265C"; -chrXIII Steinmetz_2013 transcript 800827 801436 . - . gene_id "ST01486"; transcript_id "XUT_13R-357"; -chrXIII Steinmetz_2013 transcript 802722 804264 . - . gene_id "ST01487"; transcript_id "YMR268C"; -chrXIII Steinmetz_2013 transcript 805187 806564 . - . gene_id "ST01488"; transcript_id "YMR270C"; -chrXIII Steinmetz_2013 transcript 806708 807613 . - . gene_id "ST01489"; transcript_id "YMR271C"; -chrXIII Steinmetz_2013 transcript 809448 810816 . - . gene_id "ST01490"; transcript_id "YMR272C"; -chrXIII Steinmetz_2013 transcript 811158 814179 . - . gene_id "ST01491"; transcript_id "YMR273C"; -chrXIII Steinmetz_2013 transcript 814301 815358 . - . gene_id "ST01492"; transcript_id "YMR274C"; -chrXIII Steinmetz_2013 transcript 815524 818626 . - . gene_id "ST01493"; transcript_id "YMR275C"; -chrXIII Steinmetz_2013 transcript 824662 826380 . - . gene_id "ST01494"; transcript_id "YMR279C"; -chrXIII Steinmetz_2013 transcript 832380 832955 . - . gene_id "ST01495"; transcript_id "XUT_13R-378"; -chrXIII Steinmetz_2013 transcript 833218 835142 . - . gene_id "ST01496"; transcript_id "YMR282C"; -chrXIII Steinmetz_2013 transcript 835222 836951 . - . gene_id "ST01497"; transcript_id "YMR283C"; -chrXIII Steinmetz_2013 transcript 839986 841699 . - . gene_id "ST01498"; transcript_id "YMR285C"; -chrXIII Steinmetz_2013 transcript 849826 851618 . - . gene_id "ST01499"; transcript_id "YMR290C"; -chrXIII Steinmetz_2013 transcript 854493 854983 . - . gene_id "ST01500"; transcript_id "SUT739"; -chrXIII Steinmetz_2013 transcript 855306 856823 . - . gene_id "ST01501"; transcript_id "YMR293C"; -chrXIII Steinmetz_2013 transcript 858107 858945 . - . gene_id "ST01502"; transcript_id "YMR295C"; -chrXIII Steinmetz_2013 transcript 859131 860993 . - . gene_id "ST01503"; transcript_id "YMR296C"; -chrXIII Steinmetz_2013 transcript 864299 865369 . - . gene_id "ST01504"; transcript_id "YMR299C"; -chrXIII Steinmetz_2013 transcript 865496 867217 . - . gene_id "ST01505"; transcript_id "YMR300C"; -chrXIII Steinmetz_2013 transcript 867501 869666 . - . gene_id "ST01506"; transcript_id "YMR301C"; -chrXIII Steinmetz_2013 transcript 869972 872691 . - . gene_id "ST01507"; transcript_id "YMR302C"; -chrXIII Steinmetz_2013 transcript 873204 874392 . - . gene_id "ST01508"; transcript_id "YMR303C"; -chrXIII Steinmetz_2013 transcript 881945 883579 . - . gene_id "ST01509"; transcript_id "XUT_13R-402"; -chrXIII Steinmetz_2013 transcript 888877 892368 . - . gene_id "ST01510"; transcript_id "YMR308C"; -chrXIII Steinmetz_2013 transcript 892760 895482 . - . gene_id "ST01511"; transcript_id "YMR309C"; -chrXIII Steinmetz_2013 transcript 895648 896706 . - . gene_id "ST01512"; transcript_id "YMR310C"; -chrXIII Steinmetz_2013 transcript 896784 897642 . - . gene_id "ST01513"; transcript_id "YMR311C"; -chrXIII Steinmetz_2013 transcript 898044 898271 . - . gene_id "ST01514"; transcript_id "SUT740"; -chrXIII Steinmetz_2013 transcript 899200 901345 . - . gene_id "ST01515"; transcript_id "YMR313C"; -chrXIII Steinmetz_2013 transcript 905214 906833 . - . gene_id "ST01516"; transcript_id "YMR316C-A"; -chrXIII Steinmetz_2013 transcript 907180 908167 . - . gene_id "ST01517"; transcript_id "YMR316C-B"; -chrXIII Steinmetz_2013 transcript 910902 912170 . - . gene_id "ST01518"; transcript_id "YMR318C"; -chrXIII Steinmetz_2013 transcript 912654 914617 . - . gene_id "ST01519"; transcript_id "YMR319C"; -chrXIII Steinmetz_2013 transcript 914640 915066 . - . gene_id "ST01520"; transcript_id "CUT793"; -chrXIII Steinmetz_2013 transcript 10158 11488 . + . gene_id "ST01521"; transcript_id "YML131W"; -chrXIII Steinmetz_2013 transcript 13511 14039 . + . gene_id "ST01522"; transcript_id "SUT285"; -chrXIII Steinmetz_2013 transcript 13511 14376 . + . gene_id "ST01523"; transcript_id "XUT_13F-3"; -chrXIII Steinmetz_2013 transcript 16984 18986 . + . gene_id "ST01524"; transcript_id "YML127W"; -chrXIII Steinmetz_2013 transcript 26867 28044 . + . gene_id "ST01525"; transcript_id "YML121W"; -chrXIII Steinmetz_2013 transcript 30591 31744 . + . gene_id "ST01526"; transcript_id "YML119W"; -chrXIII Steinmetz_2013 transcript 30147 30507 . + . gene_id "ST01527"; transcript_id "SUT286"; -chrXIII Steinmetz_2013 transcript 31874 33888 . + . gene_id "ST01528"; transcript_id "YML118W"; -chrXIII Steinmetz_2013 transcript 38115 39977 . + . gene_id "ST01529"; transcript_id "YML116W"; -chrXIII Steinmetz_2013 transcript 44007 44935 . + . gene_id "ST01530"; transcript_id "YML113W"; -chrXIII Steinmetz_2013 transcript 45036 46039 . + . gene_id "ST01531"; transcript_id "YML112W"; -chrXIII Steinmetz_2013 transcript 51587 54548 . + . gene_id "ST01532"; transcript_id "YML109W"; -chrXIII Steinmetz_2013 transcript 54733 55310 . + . gene_id "ST01533"; transcript_id "YML108W"; -chrXIII Steinmetz_2013 transcript 56468 57518 . + . gene_id "ST01534"; transcript_id "YML106W"; -chrXIII Steinmetz_2013 transcript 58865 59423 . + . gene_id "ST01535"; transcript_id "CUT283"; -chrXIII Steinmetz_2013 transcript 68265 69753 . + . gene_id "ST01536"; transcript_id "YML102W"; -chrXIII Steinmetz_2013 transcript 70583 74035 . + . gene_id "ST01537"; transcript_id "YML100W"; -chrXIII Steinmetz_2013 transcript 77243 77896 . + . gene_id "ST01538"; transcript_id "YML098W"; -chrXIII Steinmetz_2013 transcript 79885 81607 . + . gene_id "ST01539"; transcript_id "YML096W"; -chrXIII Steinmetz_2013 transcript 82258 82944 . + . gene_id "ST01540"; transcript_id "YML094W"; -chrXIII Steinmetz_2013 transcript 83066 85943 . + . gene_id "ST01541"; transcript_id "YML093W"; -chrXIII Steinmetz_2013 transcript 92214 94404 . + . gene_id "ST01542"; transcript_id "YML088W"; -chrXIII Steinmetz_2013 transcript 94602 95781 . + . gene_id "ST01543"; transcript_id "XUT_13F-43"; -chrXIII Steinmetz_2013 transcript 101807 103953 . + . gene_id "ST01544"; transcript_id "YML082W"; -chrXIII Steinmetz_2013 transcript 104634 108606 . + . gene_id "ST01545"; transcript_id "YML081W"; -chrXIII Steinmetz_2013 transcript 108682 110185 . + . gene_id "ST01546"; transcript_id "YML080W"; -chrXIII Steinmetz_2013 transcript 110238 110909 . + . gene_id "ST01547"; transcript_id "YML079W"; -chrXIII Steinmetz_2013 transcript 110977 111701 . + . gene_id "ST01548"; transcript_id "YML078W"; -chrXIII Steinmetz_2013 transcript 111865 112470 . + . gene_id "ST01549"; transcript_id "YML077W"; -chrXIII Steinmetz_2013 transcript 119215 120132 . + . gene_id "ST01550"; transcript_id "XUT_13F-51"; -chrXIII Steinmetz_2013 transcript 119487 120078 . + . gene_id "ST01551"; transcript_id "SUT288"; -chrXIII Steinmetz_2013 transcript 121603 123145 . + . gene_id "ST01552"; transcript_id "SUT289"; -chrXIII Steinmetz_2013 transcript 132052 133064 . + . gene_id "ST01553"; transcript_id "SUT290"; -chrXIII Steinmetz_2013 transcript 133431 135299 . + . gene_id "ST01554"; transcript_id "YML070W"; -chrXIII Steinmetz_2013 transcript 135443 137225 . + . gene_id "ST01555"; transcript_id "YML069W"; -chrXIII Steinmetz_2013 transcript 137485 139034 . + . gene_id "ST01556"; transcript_id "YML068W"; -chrXIII Steinmetz_2013 transcript 140416 141632 . + . gene_id "ST01557"; transcript_id "SUT292"; -chrXIII Steinmetz_2013 transcript 142116 145045 . + . gene_id "ST01558"; transcript_id "YML065W"; -chrXIII Steinmetz_2013 transcript 146456 147287 . + . gene_id "ST01559"; transcript_id "YML063W"; -chrXIII Steinmetz_2013 transcript 151792 153180 . + . gene_id "ST01560"; transcript_id "YML060W"; -chrXIII Steinmetz_2013 transcript 158711 159098 . + . gene_id "ST01561"; transcript_id "YML058W-A"; -chrXIII Steinmetz_2013 transcript 159361 159961 . + . gene_id "ST01562"; transcript_id "YML058W"; -chrXIII Steinmetz_2013 transcript 160097 162115 . + . gene_id "ST01563"; transcript_id "YML057W"; -chrXIII Steinmetz_2013 transcript 164754 165381 . + . gene_id "ST01564"; transcript_id "YML055W"; -chrXIII Steinmetz_2013 transcript 165529 168131 . + . gene_id "ST01565"; transcript_id "SUT295"; -chrXIII Steinmetz_2013 transcript 170372 171415 . + . gene_id "ST01566"; transcript_id "YML052W"; -chrXIII Steinmetz_2013 transcript 171521 173044 . + . gene_id "ST01567"; transcript_id "YML051W"; -chrXIII Steinmetz_2013 transcript 173129 174184 . + . gene_id "ST01568"; transcript_id "YML050W"; -chrXIII Steinmetz_2013 transcript 178381 179830 . + . gene_id "ST01569"; transcript_id "YML048W"; -chrXIII Steinmetz_2013 transcript 181386 183431 . + . gene_id "ST01570"; transcript_id "YML046W"; -chrXIII Steinmetz_2013 transcript 205607 206345 . + . gene_id "ST01571"; transcript_id "YML036W"; -chrXIII Steinmetz_2013 transcript 209457 212323 . + . gene_id "ST01572"; transcript_id "YML034W"; -chrXIII Steinmetz_2013 transcript 214147 216232 . + . gene_id "ST01573"; transcript_id "YML031W"; -chrXIII Steinmetz_2013 transcript 216412 217146 . + . gene_id "ST01574"; transcript_id "YML030W"; -chrXIII Steinmetz_2013 transcript 217282 220108 . + . gene_id "ST01575"; transcript_id "YML029W"; -chrXIII Steinmetz_2013 transcript 220109 220834 . + . gene_id "ST01576"; transcript_id "YML028W"; -chrXIII Steinmetz_2013 transcript 221335 222733 . + . gene_id "ST01577"; transcript_id "YML027W"; -chrXIII Steinmetz_2013 transcript 225863 226752 . + . gene_id "ST01578"; transcript_id "YML024W"; -chrXIII Steinmetz_2013 transcript 228915 229708 . + . gene_id "ST01579"; transcript_id "YML022W"; -chrXIII Steinmetz_2013 transcript 230955 233317 . + . gene_id "ST01580"; transcript_id "YML020W"; -chrXIII Steinmetz_2013 transcript 233444 234716 . + . gene_id "ST01581"; transcript_id "YML019W"; -chrXIII Steinmetz_2013 transcript 236506 239127 . + . gene_id "ST01582"; transcript_id "YML017W"; -chrXIII Steinmetz_2013 transcript 243222 244123 . + . gene_id "ST01583"; transcript_id "YML014W"; -chrXIII Steinmetz_2013 transcript 244124 246106 . + . gene_id "ST01584"; transcript_id "YML013W"; -chrXIII Steinmetz_2013 transcript 246075 246883 . + . gene_id "ST01585"; transcript_id "YML012W"; -chrXIII Steinmetz_2013 transcript 253686 256019 . + . gene_id "ST01586"; transcript_id "YML007W"; -chrXIII Steinmetz_2013 transcript 258334 258675 . + . gene_id "ST01587"; transcript_id "XUT_13F-112"; -chrXIII Steinmetz_2013 transcript 260214 261667 . + . gene_id "ST01588"; transcript_id "YML005W"; -chrXIII Steinmetz_2013 transcript 262833 263359 . + . gene_id "ST01589"; transcript_id "XUT_13F-116"; -chrXIII Steinmetz_2013 transcript 267081 267879 . + . gene_id "ST01590"; transcript_id "YML001W"; -chrXIII Steinmetz_2013 transcript 272159 272907 . + . gene_id "ST01591"; transcript_id "YMR002W"; -chrXIII Steinmetz_2013 transcript 273077 273789 . + . gene_id "ST01592"; transcript_id "YMR003W"; -chrXIII Steinmetz_2013 transcript 273957 275700 . + . gene_id "ST01593"; transcript_id "YMR004W"; -chrXIII Steinmetz_2013 transcript 275974 277296 . + . gene_id "ST01594"; transcript_id "YMR005W"; -chrXIII Steinmetz_2013 transcript 279942 280523 . + . gene_id "ST01595"; transcript_id "YMR007W"; -chrXIII Steinmetz_2013 transcript 284049 284721 . + . gene_id "ST01596"; transcript_id "YMR009W"; -chrXIII Steinmetz_2013 transcript 284872 286422 . + . gene_id "ST01597"; transcript_id "YMR010W"; -chrXIII Steinmetz_2013 transcript 288041 289819 . + . gene_id "ST01598"; transcript_id "YMR011W"; -chrXIII Steinmetz_2013 transcript 289928 290729 . + . gene_id "ST01599"; transcript_id "SUT297"; -chrXIII Steinmetz_2013 transcript 291006 295103 . + . gene_id "ST01600"; transcript_id "YMR012W"; -chrXIII Steinmetz_2013 transcript 298307 298475 . + . gene_id "ST01601"; transcript_id "YMR013W-A"; -chrXIII Steinmetz_2013 transcript 298842 300550 . + . gene_id "ST01602"; transcript_id "YMR014W"; -chrXIII Steinmetz_2013 transcript 302824 303887 . + . gene_id "ST01603"; transcript_id "XUT_13F-137"; -chrXIII Steinmetz_2013 transcript 315276 316994 . + . gene_id "ST01604"; transcript_id "YMR020W"; -chrXIII Steinmetz_2013 transcript 318651 319277 . + . gene_id "ST01605"; transcript_id "YMR022W"; -chrXIII Steinmetz_2013 transcript 320481 321050 . + . gene_id "ST01606"; transcript_id "XUT_13F-151"; -chrXIII Steinmetz_2013 transcript 321868 323176 . + . gene_id "ST01607"; transcript_id "YMR024W"; -chrXIII Steinmetz_2013 transcript 323288 324228 . + . gene_id "ST01608"; transcript_id "YMR025W"; -chrXIII Steinmetz_2013 transcript 325799 327346 . + . gene_id "ST01609"; transcript_id "YMR027W"; -chrXIII Steinmetz_2013 transcript 327462 328684 . + . gene_id "ST01610"; transcript_id "YMR028W"; -chrXIII Steinmetz_2013 transcript 330617 332040 . + . gene_id "ST01611"; transcript_id "YMR030W"; -chrXIII Steinmetz_2013 transcript 337745 339496 . + . gene_id "ST01612"; transcript_id "YMR033W"; -chrXIII Steinmetz_2013 transcript 341101 341776 . + . gene_id "ST01613"; transcript_id "YMR035W"; -chrXIII Steinmetz_2013 transcript 343691 344193 . + . gene_id "ST01614"; transcript_id "SUT299"; -chrXIII Steinmetz_2013 transcript 343730 344119 . + . gene_id "ST01615"; transcript_id "XUT_13F-160"; -chrXIII Steinmetz_2013 transcript 347210 348387 . + . gene_id "ST01616"; transcript_id "SUT300"; -chrXIII Steinmetz_2013 transcript 350320 350941 . + . gene_id "ST01617"; transcript_id "YMR040W"; -chrXIII Steinmetz_2013 transcript 352586 353593 . + . gene_id "ST01618"; transcript_id "YMR042W"; -chrXIII Steinmetz_2013 transcript 353854 355061 . + . gene_id "ST01619"; transcript_id "YMR043W"; -chrXIII Steinmetz_2013 transcript 355335 356995 . + . gene_id "ST01620"; transcript_id "YMR044W"; -chrXIII Steinmetz_2013 transcript 366956 368043 . + . gene_id "ST01621"; transcript_id "YMR048W"; -chrXIII Steinmetz_2013 transcript 371290 372121 . + . gene_id "ST01622"; transcript_id "SUT301"; -chrXIII Steinmetz_2013 transcript 379566 380338 . + . gene_id "ST01623"; transcript_id "YMR052W"; -chrXIII Steinmetz_2013 transcript 383089 386093 . + . gene_id "ST01624"; transcript_id "YMR054W"; -chrXIII Steinmetz_2013 transcript 388767 390871 . + . gene_id "ST01625"; transcript_id "YMR058W"; -chrXIII Steinmetz_2013 transcript 391058 391588 . + . gene_id "ST01626"; transcript_id "YMR059W"; -chrXIII Steinmetz_2013 transcript 392731 394849 . + . gene_id "ST01627"; transcript_id "YMR061W"; -chrXIII Steinmetz_2013 transcript 397014 397875 . + . gene_id "ST01628"; transcript_id "YMR063W"; -chrXIII Steinmetz_2013 transcript 401513 404303 . + . gene_id "ST01629"; transcript_id "YMR066W"; -chrXIII Steinmetz_2013 transcript 406290 407678 . + . gene_id "ST01630"; transcript_id "YMR068W"; -chrXIII Steinmetz_2013 transcript 411547 412258 . + . gene_id "ST01631"; transcript_id "YMR072W"; -chrXIII Steinmetz_2013 transcript 413815 416150 . + . gene_id "ST01632"; transcript_id "YMR075W"; -chrXIII Steinmetz_2013 transcript 422361 423428 . + . gene_id "ST01633"; transcript_id "XUT_13F-191"; -chrXIII Steinmetz_2013 transcript 424954 426389 . + . gene_id "ST01634"; transcript_id "YMR079W"; -chrXIII Steinmetz_2013 transcript 429948 431096 . + . gene_id "ST01635"; transcript_id "SUT302"; -chrXIII Steinmetz_2013 transcript 429984 431431 . + . gene_id "ST01636"; transcript_id "XUT_13F-195"; -chrXIII Steinmetz_2013 transcript 432160 433062 . + . gene_id "ST01637"; transcript_id "SUT303"; -chrXIII Steinmetz_2013 transcript 434734 436009 . + . gene_id "ST01638"; transcript_id "YMR083W"; -chrXIII Steinmetz_2013 transcript 439137 442228 . + . gene_id "ST01639"; transcript_id "YMR086W"; -chrXIII Steinmetz_2013 transcript 442469 443415 . + . gene_id "ST01640"; transcript_id "YMR087W"; -chrXIII Steinmetz_2013 transcript 448474 449971 . + . gene_id "ST01641"; transcript_id "YMR090W"; -chrXIII Steinmetz_2013 transcript 453965 455659 . + . gene_id "ST01642"; transcript_id "YMR093W"; -chrXIII Steinmetz_2013 transcript 455815 457882 . + . gene_id "ST01643"; transcript_id "YMR094W"; -chrXIII Steinmetz_2013 transcript 458315 459496 . + . gene_id "ST01644"; transcript_id "YMR096W"; -chrXIII Steinmetz_2013 transcript 462800 463300 . + . gene_id "ST01645"; transcript_id "XUT_13F-206"; -chrXIII Steinmetz_2013 transcript 465946 468379 . + . gene_id "ST01646"; transcript_id "YMR100W"; -chrXIII Steinmetz_2013 transcript 480863 481373 . + . gene_id "ST01647"; transcript_id "XUT_13F-209"; -chrXIII Steinmetz_2013 transcript 482976 483513 . + . gene_id "ST01648"; transcript_id "YMR107W"; -chrXIII Steinmetz_2013 transcript 483893 486308 . + . gene_id "ST01649"; transcript_id "YMR108W"; -chrXIII Steinmetz_2013 transcript 486546 490328 . + . gene_id "ST01650"; transcript_id "YMR109W"; -chrXIII Steinmetz_2013 transcript 494942 496344 . + . gene_id "ST01651"; transcript_id "YMR113W"; -chrXIII Steinmetz_2013 transcript 497656 499334 . + . gene_id "ST01652"; transcript_id "YMR115W"; -chrXIII Steinmetz_2013 transcript 501144 501428 . + . gene_id "ST01653"; transcript_id "CUT300"; -chrXIII Steinmetz_2013 transcript 511271 511801 . + . gene_id "ST01654"; transcript_id "YMR122W-A"; -chrXIII Steinmetz_2013 transcript 510608 511273 . + . gene_id "ST01655"; transcript_id "SUT306"; -chrXIII Steinmetz_2013 transcript 511717 512199 . + . gene_id "ST01656"; transcript_id "SUT307"; -chrXIII Steinmetz_2013 transcript 513565 514049 . + . gene_id "ST01657"; transcript_id "YMR123W"; -chrXIII Steinmetz_2013 transcript 514141 517365 . + . gene_id "ST01658"; transcript_id "YMR124W"; -chrXIII Steinmetz_2013 transcript 517464 520582 . + . gene_id "ST01659"; transcript_id "YMR125W"; -chrXIII Steinmetz_2013 transcript 522182 522851 . + . gene_id "ST01660"; transcript_id "SUT308"; -chrXIII Steinmetz_2013 transcript 522244 522998 . + . gene_id "ST01661"; transcript_id "XUT_13F-229"; -chrXIII Steinmetz_2013 transcript 523650 527576 . + . gene_id "ST01662"; transcript_id "YMR128W"; -chrXIII Steinmetz_2013 transcript 527761 531923 . + . gene_id "ST01663"; transcript_id "YMR129W"; -chrXIII Steinmetz_2013 transcript 532043 533102 . + . gene_id "ST01664"; transcript_id "YMR130W"; -chrXIII Steinmetz_2013 transcript 534968 535832 . + . gene_id "ST01665"; transcript_id "CUT301"; -chrXIII Steinmetz_2013 transcript 537814 538559 . + . gene_id "ST01666"; transcript_id "YMR134W"; -chrXIII Steinmetz_2013 transcript 541101 542953 . + . gene_id "ST01667"; transcript_id "YMR136W"; -chrXIII Steinmetz_2013 transcript 545155 545806 . + . gene_id "ST01668"; transcript_id "YMR138W"; -chrXIII Steinmetz_2013 transcript 545895 547472 . + . gene_id "ST01669"; transcript_id "YMR139W"; -chrXIII Steinmetz_2013 transcript 547662 550023 . + . gene_id "ST01670"; transcript_id "YMR140W"; -chrXIII Steinmetz_2013 transcript 551907 552986 . + . gene_id "ST01671"; transcript_id "YMR143W"; -chrXIII Steinmetz_2013 transcript 553246 554559 . + . gene_id "ST01672"; transcript_id "YMR144W"; -chrXIII Steinmetz_2013 transcript 556807 557495 . + . gene_id "ST01673"; transcript_id "SUT309"; -chrXIII Steinmetz_2013 transcript 556807 557422 . + . gene_id "ST01674"; transcript_id "XUT_13F-239"; -chrXIII Steinmetz_2013 transcript 560108 560977 . + . gene_id "ST01675"; transcript_id "YMR148W"; -chrXIII Steinmetz_2013 transcript 563085 564266 . + . gene_id "ST01676"; transcript_id "YMR152W"; -chrXIII Steinmetz_2013 transcript 564383 566011 . + . gene_id "ST01677"; transcript_id "YMR153W"; -chrXIII Steinmetz_2013 transcript 568529 570353 . + . gene_id "ST01678"; transcript_id "YMR155W"; -chrXIII Steinmetz_2013 transcript 570502 571250 . + . gene_id "ST01679"; transcript_id "SUT310"; -chrXIII Steinmetz_2013 transcript 570775 571250 . + . gene_id "ST01680"; transcript_id "XUT_13F-247"; -chrXIII Steinmetz_2013 transcript 572192 572800 . + . gene_id "ST01681"; transcript_id "YMR158W"; -chrXIII Steinmetz_2013 transcript 575019 577559 . + . gene_id "ST01682"; transcript_id "YMR160W"; -chrXIII Steinmetz_2013 transcript 577669 578773 . + . gene_id "ST01683"; transcript_id "YMR161W"; -chrXIII Steinmetz_2013 transcript 592946 593260 . + . gene_id "ST01684"; transcript_id "XUT_13F-256"; -chrXIII Steinmetz_2013 transcript 594867 597564 . + . gene_id "ST01685"; transcript_id "YMR167W"; -chrXIII Steinmetz_2013 transcript 611638 616033 . + . gene_id "ST01686"; transcript_id "YMR176W"; -chrXIII Steinmetz_2013 transcript 616429 618182 . + . gene_id "ST01687"; transcript_id "YMR177W"; -chrXIII Steinmetz_2013 transcript 618432 619354 . + . gene_id "ST01688"; transcript_id "YMR178W"; -chrXIII Steinmetz_2013 transcript 619702 622246 . + . gene_id "ST01689"; transcript_id "YMR179W"; -chrXIII Steinmetz_2013 transcript 623423 625412 . + . gene_id "ST01690"; transcript_id "XUT_13F-274"; -chrXIII Steinmetz_2013 transcript 623385 626036 . + . gene_id "ST01691"; transcript_id "YMR182W-A"; -chrXIII Steinmetz_2013 transcript 628141 628826 . + . gene_id "ST01692"; transcript_id "YMR184W"; -chrXIII Steinmetz_2013 transcript 629003 632029 . + . gene_id "ST01693"; transcript_id "YMR185W"; -chrXIII Steinmetz_2013 transcript 632328 634563 . + . gene_id "ST01694"; transcript_id "YMR186W"; -chrXIII Steinmetz_2013 transcript 637394 640683 . + . gene_id "ST01695"; transcript_id "YMR189W"; -chrXIII Steinmetz_2013 transcript 647029 649327 . + . gene_id "ST01696"; transcript_id "YMR192W"; -chrXIII Steinmetz_2013 transcript 650010 650935 . + . gene_id "ST01697"; transcript_id "YMR193W"; -chrXIII Steinmetz_2013 transcript 651128 651984 . + . gene_id "ST01698"; transcript_id "YMR194W"; -chrXIII Steinmetz_2013 transcript 653245 653899 . + . gene_id "ST01699"; transcript_id "XUT_13F-286"; -chrXIII Steinmetz_2013 transcript 653942 654542 . + . gene_id "ST01700"; transcript_id "YMR195W"; -chrXIII Steinmetz_2013 transcript 654999 658446 . + . gene_id "ST01701"; transcript_id "YMR196W"; -chrXIII Steinmetz_2013 transcript 659469 661632 . + . gene_id "ST01702"; transcript_id "YMR198W"; -chrXIII Steinmetz_2013 transcript 662446 664402 . + . gene_id "ST01703"; transcript_id "YMR199W"; -chrXIII Steinmetz_2013 transcript 664631 665869 . + . gene_id "ST01704"; transcript_id "YMR200W"; -chrXIII Steinmetz_2013 transcript 667512 668271 . + . gene_id "ST01705"; transcript_id "YMR202W"; -chrXIII Steinmetz_2013 transcript 668427 669875 . + . gene_id "ST01706"; transcript_id "YMR203W"; -chrXIII Steinmetz_2013 transcript 675144 675678 . + . gene_id "ST01707"; transcript_id "XUT_13F-294"; -chrXIII Steinmetz_2013 transcript 675742 676845 . + . gene_id "ST01708"; transcript_id "YMR206W"; -chrXIII Steinmetz_2013 transcript 684449 685907 . + . gene_id "ST01709"; transcript_id "YMR208W"; -chrXIII Steinmetz_2013 transcript 687482 688924 . + . gene_id "ST01710"; transcript_id "YMR210W"; -chrXIII Steinmetz_2013 transcript 689065 690645 . + . gene_id "ST01711"; transcript_id "YMR211W"; -chrXIII Steinmetz_2013 transcript 693332 695190 . + . gene_id "ST01712"; transcript_id "YMR213W"; -chrXIII Steinmetz_2013 transcript 695320 696606 . + . gene_id "ST01713"; transcript_id "YMR214W"; -chrXIII Steinmetz_2013 transcript 696718 698498 . + . gene_id "ST01714"; transcript_id "YMR215W"; -chrXIII Steinmetz_2013 transcript 701731 703467 . + . gene_id "ST01715"; transcript_id "YMR217W"; -chrXIII Steinmetz_2013 transcript 712306 713919 . + . gene_id "ST01716"; transcript_id "YMR220W"; -chrXIII Steinmetz_2013 transcript 716497 718572 . + . gene_id "ST01717"; transcript_id "YMR223W"; -chrXIII Steinmetz_2013 transcript 720914 722632 . + . gene_id "ST01718"; transcript_id "XUT_13F-315"; -chrXIII Steinmetz_2013 transcript 724587 725748 . + . gene_id "ST01719"; transcript_id "YMR228W"; -chrXIII Steinmetz_2013 transcript 731698 732176 . + . gene_id "ST01720"; transcript_id "XUT_13F-321"; -chrXIII Steinmetz_2013 transcript 732382 733234 . + . gene_id "ST01721"; transcript_id "YMR230W"; -chrXIII Steinmetz_2013 transcript 733493 736822 . + . gene_id "ST01722"; transcript_id "YMR231W"; -chrXIII Steinmetz_2013 transcript 739140 740070 . + . gene_id "ST01723"; transcript_id "YMR233W"; -chrXIII Steinmetz_2013 transcript 740193 741433 . + . gene_id "ST01724"; transcript_id "YMR234W"; -chrXIII Steinmetz_2013 transcript 742961 743490 . + . gene_id "ST01725"; transcript_id "YMR236W"; -chrXIII Steinmetz_2013 transcript 743665 746086 . + . gene_id "ST01726"; transcript_id "YMR237W"; -chrXIII Steinmetz_2013 transcript 746219 747819 . + . gene_id "ST01727"; transcript_id "YMR238W"; -chrXIII Steinmetz_2013 transcript 751816 752957 . + . gene_id "ST01728"; transcript_id "YMR241W"; -chrXIII Steinmetz_2013 transcript 759580 762071 . + . gene_id "ST01729"; transcript_id "YMR246W"; -chrXIII Steinmetz_2013 transcript 763375 763984 . + . gene_id "ST01730"; transcript_id "SUT314"; -chrXIII Steinmetz_2013 transcript 770758 772670 . + . gene_id "ST01731"; transcript_id "YMR250W"; -chrXIII Steinmetz_2013 transcript 773939 774724 . + . gene_id "ST01732"; transcript_id "SUT315"; -chrXIII Steinmetz_2013 transcript 774711 775213 . + . gene_id "ST01733"; transcript_id "YMR251W-A"; -chrXIII Steinmetz_2013 transcript 775985 776854 . + . gene_id "ST01734"; transcript_id "XUT_13F-337"; -chrXIII Steinmetz_2013 transcript 777948 778849 . + . gene_id "ST01735"; transcript_id "YMR255W"; -chrXIII Steinmetz_2013 transcript 779396 779676 . + . gene_id "ST01736"; transcript_id "SUT318"; -chrXIII Steinmetz_2013 transcript 784517 785020 . + . gene_id "ST01737"; transcript_id "SUT319"; -chrXIII Steinmetz_2013 transcript 793671 794887 . + . gene_id "ST01738"; transcript_id "YMR262W"; -chrXIII Steinmetz_2013 transcript 794893 795594 . + . gene_id "ST01739"; transcript_id "YMR263W"; -chrXIII Steinmetz_2013 transcript 795759 796550 . + . gene_id "ST01740"; transcript_id "YMR264W"; -chrXIII Steinmetz_2013 transcript 798440 801566 . + . gene_id "ST01741"; transcript_id "YMR266W"; -chrXIII Steinmetz_2013 transcript 801698 802841 . + . gene_id "ST01742"; transcript_id "YMR267W"; -chrXIII Steinmetz_2013 transcript 804426 805146 . + . gene_id "ST01743"; transcript_id "YMR269W"; -chrXIII Steinmetz_2013 transcript 806725 807886 . + . gene_id "ST01744"; transcript_id "XUT_13F-349"; -chrXIII Steinmetz_2013 transcript 809103 809565 . + . gene_id "ST01745"; transcript_id "XUT_13F-350"; -chrXIII Steinmetz_2013 transcript 818799 820056 . + . gene_id "ST01746"; transcript_id "YMR276W"; -chrXIII Steinmetz_2013 transcript 820137 822583 . + . gene_id "ST01747"; transcript_id "YMR277W"; -chrXIII Steinmetz_2013 transcript 822723 824738 . + . gene_id "ST01748"; transcript_id "YMR278W"; -chrXIII Steinmetz_2013 transcript 832265 833348 . + . gene_id "ST01749"; transcript_id "YMR281W"; -chrXIII Steinmetz_2013 transcript 836979 837733 . + . gene_id "ST01750"; transcript_id "XUT_13F-359"; -chrXIII Steinmetz_2013 transcript 838161 840132 . + . gene_id "ST01751"; transcript_id "YMR284W"; -chrXIII Steinmetz_2013 transcript 841925 842326 . + . gene_id "ST01752"; transcript_id "YMR286W"; -chrXIII Steinmetz_2013 transcript 845550 848540 . + . gene_id "ST01753"; transcript_id "YMR288W"; -chrXIII Steinmetz_2013 transcript 848655 850325 . + . gene_id "ST01754"; transcript_id "YMR289W"; -chrXIII Steinmetz_2013 transcript 851887 852518 . + . gene_id "ST01755"; transcript_id "XUT_13F-364"; -chrXIII Steinmetz_2013 transcript 852547 854542 . + . gene_id "ST01756"; transcript_id "YMR291W"; -chrXIII Steinmetz_2013 transcript 854765 855394 . + . gene_id "ST01757"; transcript_id "YMR292W"; -chrXIII Steinmetz_2013 transcript 856919 858145 . + . gene_id "ST01758"; transcript_id "YMR294W"; -chrXIII Steinmetz_2013 transcript 861850 863628 . + . gene_id "ST01759"; transcript_id "YMR297W"; -chrXIII Steinmetz_2013 transcript 863797 864385 . + . gene_id "ST01760"; transcript_id "YMR298W"; -chrXIII Steinmetz_2013 transcript 864505 864952 . + . gene_id "ST01761"; transcript_id "CUT312"; -chrXIII Steinmetz_2013 transcript 869626 870078 . + . gene_id "ST01762"; transcript_id "XUT_13F-373"; -chrXIII Steinmetz_2013 transcript 874791 878958 . + . gene_id "ST01763"; transcript_id "YMR304W"; -chrXIII Steinmetz_2013 transcript 886968 888859 . + . gene_id "ST01764"; transcript_id "YMR307W"; -chrXIII Steinmetz_2013 transcript 898383 899341 . + . gene_id "ST01765"; transcript_id "YMR312W"; -chrXIII Steinmetz_2013 transcript 901666 902571 . + . gene_id "ST01766"; transcript_id "YMR314W"; -chrXIII Steinmetz_2013 transcript 902758 903972 . + . gene_id "ST01767"; transcript_id "YMR315W"; -chrXIII Steinmetz_2013 transcript 904761 905904 . + . gene_id "ST01768"; transcript_id "YMR316W"; -chrXIII Steinmetz_2013 transcript 906255 906862 . + . gene_id "ST01769"; transcript_id "XUT_13F-390"; -chrXIII Steinmetz_2013 transcript 912510 914741 . + . gene_id "ST01770"; transcript_id "SUT322"; -chrXIII Steinmetz_2013 transcript 915461 917542 . + . gene_id "ST01771"; transcript_id "YMR320W"; -chrXIV Steinmetz_2013 transcript 15898 17752 . - . gene_id "ST01772"; transcript_id "YNL331C"; -chrXIV Steinmetz_2013 transcript 17741 19357 . - . gene_id "ST01773"; transcript_id "YNL330C"; -chrXIV Steinmetz_2013 transcript 19481 22651 . - . gene_id "ST01774"; transcript_id "YNL329C"; -chrXIV Steinmetz_2013 transcript 22791 23282 . - . gene_id "ST01775"; transcript_id "YNL328C"; -chrXIV Steinmetz_2013 transcript 27201 28393 . - . gene_id "ST01776"; transcript_id "YNL326C"; -chrXIV Steinmetz_2013 transcript 28679 31403 . - . gene_id "ST01777"; transcript_id "YNL325C"; -chrXIV Steinmetz_2013 transcript 33217 34262 . - . gene_id "ST01778"; transcript_id "YNL322C"; -chrXIV Steinmetz_2013 transcript 42021 43131 . - . gene_id "ST01779"; transcript_id "YNL316C"; -chrXIV Steinmetz_2013 transcript 43215 44290 . - . gene_id "ST01780"; transcript_id "YNL315C"; -chrXIV Steinmetz_2013 transcript 45221 48037 . - . gene_id "ST01781"; transcript_id "YNL313C"; -chrXIV Steinmetz_2013 transcript 49338 51702 . - . gene_id "ST01782"; transcript_id "YNL311C"; -chrXIV Steinmetz_2013 transcript 51818 52446 . - . gene_id "ST01783"; transcript_id "YNL310C"; -chrXIV Steinmetz_2013 transcript 53982 55934 . - . gene_id "ST01784"; transcript_id "YNL308C"; -chrXIV Steinmetz_2013 transcript 56103 57736 . - . gene_id "ST01785"; transcript_id "YNL307C"; -chrXIV Steinmetz_2013 transcript 58810 59822 . - . gene_id "ST01786"; transcript_id "YNL305C"; -chrXIV Steinmetz_2013 transcript 61829 62964 . - . gene_id "ST01787"; transcript_id "YNL302C"; -chrXIV Steinmetz_2013 transcript 63410 64586 . - . gene_id "ST01788"; transcript_id "YNL301C"; -chrXIV Steinmetz_2013 transcript 64853 66217 . - . gene_id "ST01789"; transcript_id "XUT_14R-21"; -chrXIV Steinmetz_2013 transcript 78504 80439 . - . gene_id "ST01790"; transcript_id "YNL294C"; -chrXIV Steinmetz_2013 transcript 84049 86013 . - . gene_id "ST01791"; transcript_id "YNL291C"; -chrXIV Steinmetz_2013 transcript 105130 107158 . - . gene_id "ST01792"; transcript_id "YNL283C"; -chrXIV Steinmetz_2013 transcript 108990 110484 . - . gene_id "ST01793"; transcript_id "YNL280C"; -chrXIV Steinmetz_2013 transcript 110763 112873 . - . gene_id "ST01794"; transcript_id "SUT743"; -chrXIV Steinmetz_2013 transcript 117063 118874 . - . gene_id "ST01795"; transcript_id "YNL276C"; -chrXIV Steinmetz_2013 transcript 121012 122231 . - . gene_id "ST01796"; transcript_id "YNL274C"; -chrXIV Steinmetz_2013 transcript 126693 129180 . - . gene_id "ST01797"; transcript_id "YNL272C"; -chrXIV Steinmetz_2013 transcript 135846 137849 . - . gene_id "ST01798"; transcript_id "YNL270C"; -chrXIV Steinmetz_2013 transcript 144130 145302 . - . gene_id "ST01799"; transcript_id "YNL265C"; -chrXIV Steinmetz_2013 transcript 145421 146619 . - . gene_id "ST01800"; transcript_id "YNL264C"; -chrXIV Steinmetz_2013 transcript 146796 147983 . - . gene_id "ST01801"; transcript_id "YNL263C"; -chrXIV Steinmetz_2013 transcript 157554 157894 . - . gene_id "ST01802"; transcript_id "YNL259C"; -chrXIV Steinmetz_2013 transcript 157994 160381 . - . gene_id "ST01803"; transcript_id "YNL258C"; -chrXIV Steinmetz_2013 transcript 167048 167817 . - . gene_id "ST01804"; transcript_id "YNL255C"; -chrXIV Steinmetz_2013 transcript 167815 169296 . - . gene_id "ST01805"; transcript_id "YNL254C"; -chrXIV Steinmetz_2013 transcript 171312 172306 . - . gene_id "ST01806"; transcript_id "YNL252C"; -chrXIV Steinmetz_2013 transcript 172429 174587 . - . gene_id "ST01807"; transcript_id "YNL251C"; -chrXIV Steinmetz_2013 transcript 178847 181044 . - . gene_id "ST01808"; transcript_id "YNL249C"; -chrXIV Steinmetz_2013 transcript 181160 182646 . - . gene_id "ST01809"; transcript_id "YNL248C"; -chrXIV Steinmetz_2013 transcript 185727 186904 . - . gene_id "ST01810"; transcript_id "YNL245C"; -chrXIV Steinmetz_2013 transcript 187026 187529 . - . gene_id "ST01811"; transcript_id "YNL244C"; -chrXIV Steinmetz_2013 transcript 196228 198002 . - . gene_id "ST01812"; transcript_id "YNL241C"; -chrXIV Steinmetz_2013 transcript 198390 199998 . - . gene_id "ST01813"; transcript_id "YNL240C"; -chrXIV Steinmetz_2013 transcript 204918 206740 . - . gene_id "ST01814"; transcript_id "SUT745"; -chrXIV Steinmetz_2013 transcript 215910 217190 . - . gene_id "ST01815"; transcript_id "YNL231C"; -chrXIV Steinmetz_2013 transcript 217144 218725 . - . gene_id "ST01816"; transcript_id "YNL230C"; -chrXIV Steinmetz_2013 transcript 220587 222487 . - . gene_id "ST01817"; transcript_id "YNL227C"; -chrXIV Steinmetz_2013 transcript 222617 224516 . - . gene_id "ST01818"; transcript_id "YNL225C"; -chrXIV Steinmetz_2013 transcript 224659 227188 . - . gene_id "ST01819"; transcript_id "YNL224C"; -chrXIV Steinmetz_2013 transcript 230926 233757 . - . gene_id "ST01820"; transcript_id "YNL221C"; -chrXIV Steinmetz_2013 transcript 235829 237809 . - . gene_id "ST01821"; transcript_id "YNL219C"; -chrXIV Steinmetz_2013 transcript 242207 244245 . - . gene_id "ST01822"; transcript_id "XUT_14R-90"; -chrXIV Steinmetz_2013 transcript 246336 247171 . - . gene_id "ST01823"; transcript_id "YNL213C"; -chrXIV Steinmetz_2013 transcript 249877 250366 . - . gene_id "ST01824"; transcript_id "YNL211C"; -chrXIV Steinmetz_2013 transcript 250553 251724 . - . gene_id "ST01825"; transcript_id "SUT746"; -chrXIV Steinmetz_2013 transcript 260437 263480 . - . gene_id "ST01826"; transcript_id "YNL201C"; -chrXIV Steinmetz_2013 transcript 263633 264553 . - . gene_id "ST01827"; transcript_id "YNL200C"; -chrXIV Steinmetz_2013 transcript 266916 269953 . - . gene_id "ST01828"; transcript_id "YNL197C"; -chrXIV Steinmetz_2013 transcript 293009 295713 . - . gene_id "ST01829"; transcript_id "YNL183C"; -chrXIV Steinmetz_2013 transcript 295875 297687 . - . gene_id "ST01830"; transcript_id "YNL182C"; -chrXIV Steinmetz_2013 transcript 299563 300656 . - . gene_id "ST01831"; transcript_id "YNL180C"; -chrXIV Steinmetz_2013 transcript 301197 302297 . - . gene_id "ST01832"; transcript_id "XUT_14R-114"; -chrXIV Steinmetz_2013 transcript 303518 304664 . - . gene_id "ST01833"; transcript_id "YNL177C"; -chrXIV Steinmetz_2013 transcript 304819 307159 . - . gene_id "ST01834"; transcript_id "YNL176C"; -chrXIV Steinmetz_2013 transcript 307280 308648 . - . gene_id "ST01835"; transcript_id "YNL175C"; -chrXIV Steinmetz_2013 transcript 308862 310109 . - . gene_id "ST01836"; transcript_id "YNL173C"; -chrXIV Steinmetz_2013 transcript 316082 317778 . - . gene_id "ST01837"; transcript_id "YNL169C"; -chrXIV Steinmetz_2013 transcript 317874 318843 . - . gene_id "ST01838"; transcript_id "YNL168C"; -chrXIV Steinmetz_2013 transcript 319199 321703 . - . gene_id "ST01839"; transcript_id "YNL167C"; -chrXIV Steinmetz_2013 transcript 322099 323575 . - . gene_id "ST01840"; transcript_id "YNL166C"; -chrXIV Steinmetz_2013 transcript 325198 326485 . - . gene_id "ST01841"; transcript_id "YNL164C"; -chrXIV Steinmetz_2013 transcript 326611 330132 . - . gene_id "ST01842"; transcript_id "YNL163C"; -chrXIV Steinmetz_2013 transcript 335167 337757 . - . gene_id "ST01843"; transcript_id "SUT747"; -chrXIV Steinmetz_2013 transcript 338030 339368 . - . gene_id "ST01844"; transcript_id "YNL159C"; -chrXIV Steinmetz_2013 transcript 340946 342139 . - . gene_id "ST01845"; transcript_id "YNL156C"; -chrXIV Steinmetz_2013 transcript 343407 345498 . - . gene_id "ST01846"; transcript_id "YNL154C"; -chrXIV Steinmetz_2013 transcript 345471 346086 . - . gene_id "ST01847"; transcript_id "YNL153C"; -chrXIV Steinmetz_2013 transcript 347621 348571 . - . gene_id "ST01848"; transcript_id "YNL151C"; -chrXIV Steinmetz_2013 transcript 349262 349774 . - . gene_id "ST01849"; transcript_id "YNL149C"; -chrXIV Steinmetz_2013 transcript 349782 350682 . - . gene_id "ST01850"; transcript_id "YNL148C"; -chrXIV Steinmetz_2013 transcript 352757 355157 . - . gene_id "ST01851"; transcript_id "YNL144C"; -chrXIV Steinmetz_2013 transcript 358954 359230 . - . gene_id "ST01852"; transcript_id "CUT808"; -chrXIV Steinmetz_2013 transcript 368376 370149 . - . gene_id "ST01853"; transcript_id "YNL137C"; -chrXIV Steinmetz_2013 transcript 371689 372257 . - . gene_id "ST01854"; transcript_id "YNL135C"; -chrXIV Steinmetz_2013 transcript 372400 373626 . - . gene_id "ST01855"; transcript_id "YNL134C"; -chrXIV Steinmetz_2013 transcript 374057 374712 . - . gene_id "ST01856"; transcript_id "YNL133C"; -chrXIV Steinmetz_2013 transcript 379461 380873 . - . gene_id "ST01857"; transcript_id "YNL130C"; -chrXIV Steinmetz_2013 transcript 381226 381855 . - . gene_id "ST01858"; transcript_id "YNL130C-A"; -chrXIV Steinmetz_2013 transcript 390049 392343 . - . gene_id "ST01859"; transcript_id "YNL125C"; -chrXIV Steinmetz_2013 transcript 398448 400585 . - . gene_id "ST01860"; transcript_id "YNL121C"; -chrXIV Steinmetz_2013 transcript 402505 405616 . - . gene_id "ST01861"; transcript_id "YNL118C"; -chrXIV Steinmetz_2013 transcript 407662 408052 . - . gene_id "ST01862"; transcript_id "CUT811"; -chrXIV Steinmetz_2013 transcript 409966 412074 . - . gene_id "ST01863"; transcript_id "YNL115C"; -chrXIV Steinmetz_2013 transcript 412276 413290 . - . gene_id "ST01864"; transcript_id "YNL114C"; -chrXIV Steinmetz_2013 transcript 416699 417333 . - . gene_id "ST01865"; transcript_id "YNL111C"; -chrXIV Steinmetz_2013 transcript 417706 418526 . - . gene_id "ST01866"; transcript_id "YNL110C"; -chrXIV Steinmetz_2013 transcript 418860 419864 . - . gene_id "ST01867"; transcript_id "YNL108C"; -chrXIV Steinmetz_2013 transcript 420868 424597 . - . gene_id "ST01868"; transcript_id "YNL106C"; -chrXIV Steinmetz_2013 transcript 424753 426864 . - . gene_id "ST01869"; transcript_id "YNL104C"; -chrXIV Steinmetz_2013 transcript 438305 439307 . - . gene_id "ST01870"; transcript_id "YNL099C"; -chrXIV Steinmetz_2013 transcript 439482 440584 . - . gene_id "ST01871"; transcript_id "YNL098C"; -chrXIV Steinmetz_2013 transcript 441246 442466 . - . gene_id "ST01872"; transcript_id "YNL097C"; -chrXIV Steinmetz_2013 transcript 443191 444359 . - . gene_id "ST01873"; transcript_id "YNL096C"; -chrXIV Steinmetz_2013 transcript 444667 447006 . - . gene_id "ST01874"; transcript_id "YNL095C"; -chrXIV Steinmetz_2013 transcript 466054 466636 . - . gene_id "ST01875"; transcript_id "SUT748"; -chrXIV Steinmetz_2013 transcript 469976 471156 . - . gene_id "ST01876"; transcript_id "YNL084C"; -chrXIV Steinmetz_2013 transcript 476011 476653 . - . gene_id "ST01877"; transcript_id "YNL081C"; -chrXIV Steinmetz_2013 transcript 476826 478204 . - . gene_id "ST01878"; transcript_id "YNL080C"; -chrXIV Steinmetz_2013 transcript 478386 479205 . - . gene_id "ST01879"; transcript_id "YNL079C"; -chrXIV Steinmetz_2013 transcript 479482 480182 . - . gene_id "ST01880"; transcript_id "XUT_14R-192"; -chrXIV Steinmetz_2013 transcript 486609 488170 . - . gene_id "ST01881"; transcript_id "YNL074C"; -chrXIV Steinmetz_2013 transcript 490095 491259 . - . gene_id "ST01882"; transcript_id "XUT_14R-204"; -chrXIV Steinmetz_2013 transcript 493800 495016 . - . gene_id "ST01883"; transcript_id "YNL069C"; -chrXIV Steinmetz_2013 transcript 495531 498499 . - . gene_id "ST01884"; transcript_id "YNL068C"; -chrXIV Steinmetz_2013 transcript 505746 507290 . - . gene_id "ST01885"; transcript_id "YNL064C"; -chrXIV Steinmetz_2013 transcript 508675 510241 . - . gene_id "ST01886"; transcript_id "YNL062C"; -chrXIV Steinmetz_2013 transcript 512544 514951 . - . gene_id "ST01887"; transcript_id "YNL059C"; -chrXIV Steinmetz_2013 transcript 515656 516741 . - . gene_id "ST01888"; transcript_id "YNL058C"; -chrXIV Steinmetz_2013 transcript 517933 518884 . - . gene_id "ST01889"; transcript_id "YNL055C"; -chrXIV Steinmetz_2013 transcript 525532 525837 . - . gene_id "ST01890"; transcript_id "XUT_14R-219"; -chrXIV Steinmetz_2013 transcript 525607 525837 . - . gene_id "ST01891"; transcript_id "CUT816"; -chrXIV Steinmetz_2013 transcript 529698 531438 . - . gene_id "ST01892"; transcript_id "SUT749"; -chrXIV Steinmetz_2013 transcript 534016 535022 . - . gene_id "ST01893"; transcript_id "YNL050C"; -chrXIV Steinmetz_2013 transcript 535189 537925 . - . gene_id "ST01894"; transcript_id "YNL049C"; -chrXIV Steinmetz_2013 transcript 539828 541910 . - . gene_id "ST01895"; transcript_id "YNL047C"; -chrXIV Steinmetz_2013 transcript 542068 543319 . - . gene_id "ST01896"; transcript_id "SUT750"; -chrXIV Steinmetz_2013 transcript 544977 545993 . - . gene_id "ST01897"; transcript_id "YNL043C"; -chrXIV Steinmetz_2013 transcript 547340 549365 . - . gene_id "ST01898"; transcript_id "XUT_14R-232"; -chrXIV Steinmetz_2013 transcript 549289 552042 . - . gene_id "ST01899"; transcript_id "YNL041C"; -chrXIV Steinmetz_2013 transcript 557794 559115 . - . gene_id "ST01900"; transcript_id "YNL037C"; -chrXIV Steinmetz_2013 transcript 568308 569723 . - . gene_id "ST01901"; transcript_id "YNL035C"; -chrXIV Steinmetz_2013 transcript 575390 576066 . - . gene_id "ST01902"; transcript_id "YNL031C"; -chrXIV Steinmetz_2013 transcript 577115 578818 . - . gene_id "ST01903"; transcript_id "YNL029C"; -chrXIV Steinmetz_2013 transcript 583623 585318 . - . gene_id "ST01904"; transcript_id "YNL025C"; -chrXIV Steinmetz_2013 transcript 586333 586874 . - . gene_id "ST01905"; transcript_id "YNL024C-A"; -chrXIV Steinmetz_2013 transcript 587004 587866 . - . gene_id "ST01906"; transcript_id "YNL024C"; -chrXIV Steinmetz_2013 transcript 588186 591222 . - . gene_id "ST01907"; transcript_id "YNL023C"; -chrXIV Steinmetz_2013 transcript 591332 592924 . - . gene_id "ST01908"; transcript_id "YNL022C"; -chrXIV Steinmetz_2013 transcript 595471 597667 . - . gene_id "ST01909"; transcript_id "YNL020C"; -chrXIV Steinmetz_2013 transcript 604441 605118 . - . gene_id "ST01910"; transcript_id "SUT751"; -chrXIV Steinmetz_2013 transcript 609579 611196 . - . gene_id "ST01911"; transcript_id "XUT_14R-269"; -chrXIV Steinmetz_2013 transcript 611755 613204 . - . gene_id "ST01912"; transcript_id "YNL011C"; -chrXIV Steinmetz_2013 transcript 616172 618268 . - . gene_id "ST01913"; transcript_id "YNL008C"; -chrXIV Steinmetz_2013 transcript 618455 619706 . - . gene_id "ST01914"; transcript_id "YNL007C"; -chrXIV Steinmetz_2013 transcript 621237 622473 . - . gene_id "ST01915"; transcript_id "YNL005C"; -chrXIV Steinmetz_2013 transcript 624789 625861 . - . gene_id "ST01916"; transcript_id "YNL003C"; -chrXIV Steinmetz_2013 transcript 626109 627159 . - . gene_id "ST01917"; transcript_id "YNL002C"; -chrXIV Steinmetz_2013 transcript 629432 631161 . - . gene_id "ST01918"; transcript_id "YNR001C"; -chrXIV Steinmetz_2013 transcript 632860 633886 . - . gene_id "ST01919"; transcript_id "YNR002C"; -chrXIV Steinmetz_2013 transcript 634244 635326 . - . gene_id "ST01920"; transcript_id "YNR003C"; -chrXIV Steinmetz_2013 transcript 635807 636757 . - . gene_id "ST01921"; transcript_id "XUT_14R-284"; -chrXIV Steinmetz_2013 transcript 638879 640140 . - . gene_id "ST01922"; transcript_id "YNR007C"; -chrXIV Steinmetz_2013 transcript 642949 643534 . - . gene_id "ST01923"; transcript_id "XUT_14R-286"; -chrXIV Steinmetz_2013 transcript 644163 646960 . - . gene_id "ST01924"; transcript_id "YNR011C"; -chrXIV Steinmetz_2013 transcript 648926 651755 . - . gene_id "ST01925"; transcript_id "YNR013C"; -chrXIV Steinmetz_2013 transcript 652278 653219 . - . gene_id "ST01926"; transcript_id "XUT_14R-291"; -chrXIV Steinmetz_2013 transcript 652336 653219 . - . gene_id "ST01927"; transcript_id "SUT754"; -chrXIV Steinmetz_2013 transcript 669661 670226 . - . gene_id "ST01928"; transcript_id "YNR022C"; -chrXIV Steinmetz_2013 transcript 673062 674725 . - . gene_id "ST01929"; transcript_id "YNR026C"; -chrXIV Steinmetz_2013 transcript 677111 678517 . - . gene_id "ST01930"; transcript_id "YNR029C"; -chrXIV Steinmetz_2013 transcript 687141 687496 . - . gene_id "ST01931"; transcript_id "YNR032C-A"; -chrXIV Steinmetz_2013 transcript 692974 694055 . - . gene_id "ST01932"; transcript_id "YNR035C"; -chrXIV Steinmetz_2013 transcript 694198 694832 . - . gene_id "ST01933"; transcript_id "YNR036C"; -chrXIV Steinmetz_2013 transcript 694941 695358 . - . gene_id "ST01934"; transcript_id "YNR037C"; -chrXIV Steinmetz_2013 transcript 697561 699474 . - . gene_id "ST01935"; transcript_id "YNR039C"; -chrXIV Steinmetz_2013 transcript 700499 701687 . - . gene_id "ST01936"; transcript_id "YNR041C"; -chrXIV Steinmetz_2013 transcript 712933 713673 . - . gene_id "ST01937"; transcript_id "YNR049C"; -chrXIV Steinmetz_2013 transcript 713925 715427 . - . gene_id "ST01938"; transcript_id "YNR050C"; -chrXIV Steinmetz_2013 transcript 716343 719068 . - . gene_id "ST01939"; transcript_id "YNR051C"; -chrXIV Steinmetz_2013 transcript 719295 720741 . - . gene_id "ST01940"; transcript_id "YNR052C"; -chrXIV Steinmetz_2013 transcript 720930 723139 . - . gene_id "ST01941"; transcript_id "YNR053C"; -chrXIV Steinmetz_2013 transcript 723312 724341 . - . gene_id "ST01942"; transcript_id "YNR054C"; -chrXIV Steinmetz_2013 transcript 728348 730643 . - . gene_id "ST01943"; transcript_id "YNR055C"; -chrXIV Steinmetz_2013 transcript 735757 736887 . - . gene_id "ST01944"; transcript_id "XUT_14R-327"; -chrXIV Steinmetz_2013 transcript 735787 736162 . - . gene_id "ST01945"; transcript_id "SUT756"; -chrXIV Steinmetz_2013 transcript 740212 742212 . - . gene_id "ST01946"; transcript_id "SUT757"; -chrXIV Steinmetz_2013 transcript 742567 743626 . - . gene_id "ST01947"; transcript_id "YNR061C"; -chrXIV Steinmetz_2013 transcript 755648 759145 . - . gene_id "ST01948"; transcript_id "YNR067C"; -chrXIV Steinmetz_2013 transcript 764704 768577 . - . gene_id "ST01949"; transcript_id "XUT_14R-344"; -chrXIV Steinmetz_2013 transcript 766483 769170 . - . gene_id "ST01950"; transcript_id "SUT760"; -chrXIV Steinmetz_2013 transcript 770310 771856 . - . gene_id "ST01951"; transcript_id "YNR071C"; -chrXIV Steinmetz_2013 transcript 771479 772405 . - . gene_id "ST01952"; transcript_id "XUT_14R-347"; -chrXIV Steinmetz_2013 transcript 774660 776300 . - . gene_id "ST01953"; transcript_id "YNR073C"; -chrXIV Steinmetz_2013 transcript 16578 17803 . + . gene_id "ST01954"; transcript_id "XUT_14F-6"; -chrXIV Steinmetz_2013 transcript 24017 27291 . + . gene_id "ST01955"; transcript_id "YNL327W"; -chrXIV Steinmetz_2013 transcript 31900 33304 . + . gene_id "ST01956"; transcript_id "YNL323W"; -chrXIV Steinmetz_2013 transcript 34688 37552 . + . gene_id "ST01957"; transcript_id "YNL321W"; -chrXIV Steinmetz_2013 transcript 37635 38641 . + . gene_id "ST01958"; transcript_id "YNL320W"; -chrXIV Steinmetz_2013 transcript 40608 42119 . + . gene_id "ST01959"; transcript_id "YNL317W"; -chrXIV Steinmetz_2013 transcript 44391 45317 . + . gene_id "ST01960"; transcript_id "YNL314W"; -chrXIV Steinmetz_2013 transcript 48248 49294 . + . gene_id "ST01961"; transcript_id "YNL312W"; -chrXIV Steinmetz_2013 transcript 52597 54051 . + . gene_id "ST01962"; transcript_id "YNL309W"; -chrXIV Steinmetz_2013 transcript 58129 58922 . + . gene_id "ST01963"; transcript_id "YNL306W"; -chrXIV Steinmetz_2013 transcript 65652 66308 . + . gene_id "ST01964"; transcript_id "YNL300W"; -chrXIV Steinmetz_2013 transcript 66433 68509 . + . gene_id "ST01965"; transcript_id "YNL299W"; -chrXIV Steinmetz_2013 transcript 68726 71549 . + . gene_id "ST01966"; transcript_id "YNL298W"; -chrXIV Steinmetz_2013 transcript 76809 78657 . + . gene_id "ST01967"; transcript_id "YNL295W"; -chrXIV Steinmetz_2013 transcript 80576 82642 . + . gene_id "ST01968"; transcript_id "YNL293W"; -chrXIV Steinmetz_2013 transcript 82797 84128 . + . gene_id "ST01969"; transcript_id "YNL292W"; -chrXIV Steinmetz_2013 transcript 86210 87315 . + . gene_id "ST01970"; transcript_id "YNL290W"; -chrXIV Steinmetz_2013 transcript 87826 88872 . + . gene_id "ST01971"; transcript_id "YNL289W"; -chrXIV Steinmetz_2013 transcript 90178 91576 . + . gene_id "ST01972"; transcript_id "YNL288W"; -chrXIV Steinmetz_2013 transcript 91805 95033 . + . gene_id "ST01973"; transcript_id "YNL287W"; -chrXIV Steinmetz_2013 transcript 95128 96168 . + . gene_id "ST01974"; transcript_id "YNL286W"; -chrXIV Steinmetz_2013 transcript 104267 104741 . + . gene_id "ST01975"; transcript_id "XUT_14F-37"; -chrXIV Steinmetz_2013 transcript 108448 109088 . + . gene_id "ST01976"; transcript_id "YNL281W"; -chrXIV Steinmetz_2013 transcript 113155 116642 . + . gene_id "ST01977"; transcript_id "YNL278W"; -chrXIV Steinmetz_2013 transcript 116677 117166 . + . gene_id "ST01978"; transcript_id "YNL277W-A"; -chrXIV Steinmetz_2013 transcript 117239 118929 . + . gene_id "ST01979"; transcript_id "YNL277W"; -chrXIV Steinmetz_2013 transcript 119251 121087 . + . gene_id "ST01980"; transcript_id "YNL275W"; -chrXIV Steinmetz_2013 transcript 122834 126653 . + . gene_id "ST01981"; transcript_id "YNL273W"; -chrXIV Steinmetz_2013 transcript 138495 140518 . + . gene_id "ST01982"; transcript_id "YNL268W"; -chrXIV Steinmetz_2013 transcript 140779 144209 . + . gene_id "ST01983"; transcript_id "YNL267W"; -chrXIV Steinmetz_2013 transcript 155054 156663 . + . gene_id "ST01984"; transcript_id "YNL261W"; -chrXIV Steinmetz_2013 transcript 164571 167157 . + . gene_id "ST01985"; transcript_id "YNL256W"; -chrXIV Steinmetz_2013 transcript 168006 169639 . + . gene_id "ST01986"; transcript_id "XUT_14F-55"; -chrXIV Steinmetz_2013 transcript 169986 171442 . + . gene_id "ST01987"; transcript_id "YNL253W"; -chrXIV Steinmetz_2013 transcript 182871 185280 . + . gene_id "ST01988"; transcript_id "YNL247W"; -chrXIV Steinmetz_2013 transcript 185453 186627 . + . gene_id "ST01989"; transcript_id "YNL246W"; -chrXIV Steinmetz_2013 transcript 187998 191043 . + . gene_id "ST01990"; transcript_id "YNL243W"; -chrXIV Steinmetz_2013 transcript 200466 202069 . + . gene_id "ST01991"; transcript_id "YNL239W"; -chrXIV Steinmetz_2013 transcript 202146 205004 . + . gene_id "ST01992"; transcript_id "YNL238W"; -chrXIV Steinmetz_2013 transcript 205119 206736 . + . gene_id "ST01993"; transcript_id "YNL237W"; -chrXIV Steinmetz_2013 transcript 206883 209945 . + . gene_id "ST01994"; transcript_id "YNL236W"; -chrXIV Steinmetz_2013 transcript 210200 211644 . + . gene_id "ST01995"; transcript_id "YNL234W"; -chrXIV Steinmetz_2013 transcript 211737 214685 . + . gene_id "ST01996"; transcript_id "YNL233W"; -chrXIV Steinmetz_2013 transcript 214863 215867 . + . gene_id "ST01997"; transcript_id "YNL232W"; -chrXIV Steinmetz_2013 transcript 220037 221606 . + . gene_id "ST01998"; transcript_id "YNL228W"; -chrXIV Steinmetz_2013 transcript 227366 228922 . + . gene_id "ST01999"; transcript_id "YNL223W"; -chrXIV Steinmetz_2013 transcript 229062 229890 . + . gene_id "ST02000"; transcript_id "YNL222W"; -chrXIV Steinmetz_2013 transcript 234322 235821 . + . gene_id "ST02001"; transcript_id "YNL220W"; -chrXIV Steinmetz_2013 transcript 237995 240065 . + . gene_id "ST02002"; transcript_id "YNL218W"; -chrXIV Steinmetz_2013 transcript 240304 241418 . + . gene_id "ST02003"; transcript_id "YNL217W"; -chrXIV Steinmetz_2013 transcript 241576 244308 . + . gene_id "ST02004"; transcript_id "YNL216W"; -chrXIV Steinmetz_2013 transcript 244398 245495 . + . gene_id "ST02005"; transcript_id "YNL215W"; -chrXIV Steinmetz_2013 transcript 245596 246470 . + . gene_id "ST02006"; transcript_id "YNL214W"; -chrXIV Steinmetz_2013 transcript 247401 249956 . + . gene_id "ST02007"; transcript_id "YNL212W"; -chrXIV Steinmetz_2013 transcript 252036 254019 . + . gene_id "ST02008"; transcript_id "YNL209W"; -chrXIV Steinmetz_2013 transcript 254399 255128 . + . gene_id "ST02009"; transcript_id "YNL208W"; -chrXIV Steinmetz_2013 transcript 255228 256680 . + . gene_id "ST02010"; transcript_id "YNL207W"; -chrXIV Steinmetz_2013 transcript 259558 260593 . + . gene_id "ST02011"; transcript_id "YNL202W"; -chrXIV Steinmetz_2013 transcript 270173 271024 . + . gene_id "ST02012"; transcript_id "XUT_14F-101"; -chrXIV Steinmetz_2013 transcript 272019 273669 . + . gene_id "ST02013"; transcript_id "SUT326"; -chrXIV Steinmetz_2013 transcript 274344 276097 . + . gene_id "ST02014"; transcript_id "YNL193W"; -chrXIV Steinmetz_2013 transcript 276346 279982 . + . gene_id "ST02015"; transcript_id "YNL192W"; -chrXIV Steinmetz_2013 transcript 280346 281606 . + . gene_id "ST02016"; transcript_id "YNL191W"; -chrXIV Steinmetz_2013 transcript 282155 283628 . + . gene_id "ST02017"; transcript_id "YNL190W"; -chrXIV Steinmetz_2013 transcript 284068 286009 . + . gene_id "ST02018"; transcript_id "YNL189W"; -chrXIV Steinmetz_2013 transcript 286256 287631 . + . gene_id "ST02019"; transcript_id "YNL188W"; -chrXIV Steinmetz_2013 transcript 287785 289222 . + . gene_id "ST02020"; transcript_id "YNL187W"; -chrXIV Steinmetz_2013 transcript 289345 291983 . + . gene_id "ST02021"; transcript_id "YNL186W"; -chrXIV Steinmetz_2013 transcript 298266 299643 . + . gene_id "ST02022"; transcript_id "YNL181W"; -chrXIV Steinmetz_2013 transcript 302662 303461 . + . gene_id "ST02023"; transcript_id "YNL178W"; -chrXIV Steinmetz_2013 transcript 318673 319330 . + . gene_id "ST02024"; transcript_id "SUT327"; -chrXIV Steinmetz_2013 transcript 323755 325203 . + . gene_id "ST02025"; transcript_id "YNL165W"; -chrXIV Steinmetz_2013 transcript 330312 330922 . + . gene_id "ST02026"; transcript_id "YNL162W-A"; -chrXIV Steinmetz_2013 transcript 331292 332244 . + . gene_id "ST02027"; transcript_id "YNL162W"; -chrXIV Steinmetz_2013 transcript 332457 334956 . + . gene_id "ST02028"; transcript_id "YNL161W"; -chrXIV Steinmetz_2013 transcript 335283 336554 . + . gene_id "ST02029"; transcript_id "SUT328"; -chrXIV Steinmetz_2013 transcript 336490 337837 . + . gene_id "ST02030"; transcript_id "YNL160W"; -chrXIV Steinmetz_2013 transcript 337996 339191 . + . gene_id "ST02031"; transcript_id "XUT_14F-123"; -chrXIV Steinmetz_2013 transcript 337996 338280 . + . gene_id "ST02032"; transcript_id "CUT330"; -chrXIV Steinmetz_2013 transcript 340333 340939 . + . gene_id "ST02033"; transcript_id "YNL157W"; -chrXIV Steinmetz_2013 transcript 342412 343465 . + . gene_id "ST02034"; transcript_id "YNL155W"; -chrXIV Steinmetz_2013 transcript 346287 347610 . + . gene_id "ST02035"; transcript_id "YNL152W"; -chrXIV Steinmetz_2013 transcript 348745 349117 . + . gene_id "ST02036"; transcript_id "CUT332"; -chrXIV Steinmetz_2013 transcript 350859 351426 . + . gene_id "ST02037"; transcript_id "YNL147W"; -chrXIV Steinmetz_2013 transcript 351645 352327 . + . gene_id "ST02038"; transcript_id "YNL146W"; -chrXIV Steinmetz_2013 transcript 352373 352705 . + . gene_id "ST02039"; transcript_id "YNL145W"; -chrXIV Steinmetz_2013 transcript 355884 356442 . + . gene_id "ST02040"; transcript_id "SUT329"; -chrXIV Steinmetz_2013 transcript 357118 359041 . + . gene_id "ST02041"; transcript_id "YNL142W"; -chrXIV Steinmetz_2013 transcript 359571 360754 . + . gene_id "ST02042"; transcript_id "YNL141W"; -chrXIV Steinmetz_2013 transcript 365950 366487 . + . gene_id "ST02043"; transcript_id "YNL138W-A"; -chrXIV Steinmetz_2013 transcript 366715 368466 . + . gene_id "ST02044"; transcript_id "YNL138W"; -chrXIV Steinmetz_2013 transcript 370348 371774 . + . gene_id "ST02045"; transcript_id "YNL136W"; -chrXIV Steinmetz_2013 transcript 372466 374151 . + . gene_id "ST02046"; transcript_id "SUT330"; -chrXIV Steinmetz_2013 transcript 375230 378578 . + . gene_id "ST02047"; transcript_id "YNL132W"; -chrXIV Steinmetz_2013 transcript 378720 379550 . + . gene_id "ST02048"; transcript_id "YNL131W"; -chrXIV Steinmetz_2013 transcript 381064 381320 . + . gene_id "ST02049"; transcript_id "CUT334"; -chrXIV Steinmetz_2013 transcript 381475 382325 . + . gene_id "ST02050"; transcript_id "YNL129W"; -chrXIV Steinmetz_2013 transcript 383934 387002 . + . gene_id "ST02051"; transcript_id "YNL127W"; -chrXIV Steinmetz_2013 transcript 387172 389843 . + . gene_id "ST02052"; transcript_id "YNL126W"; -chrXIV Steinmetz_2013 transcript 392864 394475 . + . gene_id "ST02053"; transcript_id "YNL124W"; -chrXIV Steinmetz_2013 transcript 394652 397742 . + . gene_id "ST02054"; transcript_id "YNL123W"; -chrXIV Steinmetz_2013 transcript 401032 402653 . + . gene_id "ST02055"; transcript_id "YNL119W"; -chrXIV Steinmetz_2013 transcript 406295 408111 . + . gene_id "ST02056"; transcript_id "YNL117W"; -chrXIV Steinmetz_2013 transcript 408280 410068 . + . gene_id "ST02057"; transcript_id "YNL116W"; -chrXIV Steinmetz_2013 transcript 412723 413378 . + . gene_id "ST02058"; transcript_id "YNL113W"; -chrXIV Steinmetz_2013 transcript 413598 416414 . + . gene_id "ST02059"; transcript_id "YNL112W"; -chrXIV Steinmetz_2013 transcript 416603 416808 . + . gene_id "ST02060"; transcript_id "SUT331"; -chrXIV Steinmetz_2013 transcript 418869 419885 . + . gene_id "ST02061"; transcript_id "YNL109W"; -chrXIV Steinmetz_2013 transcript 420095 420940 . + . gene_id "ST02062"; transcript_id "YNL107W"; -chrXIV Steinmetz_2013 transcript 426070 427108 . + . gene_id "ST02063"; transcript_id "YNL103W-A"; -chrXIV Steinmetz_2013 transcript 427579 429836 . + . gene_id "ST02064"; transcript_id "YNL103W"; -chrXIV Steinmetz_2013 transcript 434812 437330 . + . gene_id "ST02065"; transcript_id "YNL101W"; -chrXIV Steinmetz_2013 transcript 437571 438433 . + . gene_id "ST02066"; transcript_id "YNL100W"; -chrXIV Steinmetz_2013 transcript 440695 441345 . + . gene_id "ST02067"; transcript_id "XUT_14F-166"; -chrXIV Steinmetz_2013 transcript 440785 441367 . + . gene_id "ST02068"; transcript_id "SUT333"; -chrXIV Steinmetz_2013 transcript 441302 441607 . + . gene_id "ST02069"; transcript_id "YNL097W-A"; -chrXIV Steinmetz_2013 transcript 444757 446498 . + . gene_id "ST02070"; transcript_id "SUT334"; -chrXIV Steinmetz_2013 transcript 447336 449425 . + . gene_id "ST02071"; transcript_id "YNL094W"; -chrXIV Steinmetz_2013 transcript 449608 450805 . + . gene_id "ST02072"; transcript_id "YNL093W"; -chrXIV Steinmetz_2013 transcript 450787 452117 . + . gene_id "ST02073"; transcript_id "YNL092W"; -chrXIV Steinmetz_2013 transcript 452267 456202 . + . gene_id "ST02074"; transcript_id "YNL091W"; -chrXIV Steinmetz_2013 transcript 456421 457501 . + . gene_id "ST02075"; transcript_id "YNL090W"; -chrXIV Steinmetz_2013 transcript 462266 466152 . + . gene_id "ST02076"; transcript_id "YNL087W"; -chrXIV Steinmetz_2013 transcript 466237 466752 . + . gene_id "ST02077"; transcript_id "YNL086W"; -chrXIV Steinmetz_2013 transcript 466865 469918 . + . gene_id "ST02078"; transcript_id "YNL085W"; -chrXIV Steinmetz_2013 transcript 471347 473092 . + . gene_id "ST02079"; transcript_id "YNL083W"; -chrXIV Steinmetz_2013 transcript 473346 476109 . + . gene_id "ST02080"; transcript_id "YNL082W"; -chrXIV Steinmetz_2013 transcript 479759 481142 . + . gene_id "ST02081"; transcript_id "YNL078W"; -chrXIV Steinmetz_2013 transcript 481204 483068 . + . gene_id "ST02082"; transcript_id "YNL077W"; -chrXIV Steinmetz_2013 transcript 483284 485371 . + . gene_id "ST02083"; transcript_id "YNL076W"; -chrXIV Steinmetz_2013 transcript 485548 486552 . + . gene_id "ST02084"; transcript_id "YNL075W"; -chrXIV Steinmetz_2013 transcript 488369 490209 . + . gene_id "ST02085"; transcript_id "YNL073W"; -chrXIV Steinmetz_2013 transcript 490296 491323 . + . gene_id "ST02086"; transcript_id "YNL072W"; -chrXIV Steinmetz_2013 transcript 491492 493126 . + . gene_id "ST02087"; transcript_id "YNL071W"; -chrXIV Steinmetz_2013 transcript 493313 493685 . + . gene_id "ST02088"; transcript_id "YNL070W"; -chrXIV Steinmetz_2013 transcript 499648 500486 . + . gene_id "ST02089"; transcript_id "YNL067W"; -chrXIV Steinmetz_2013 transcript 500962 502975 . + . gene_id "ST02090"; transcript_id "YNL066W"; -chrXIV Steinmetz_2013 transcript 500917 501193 . + . gene_id "ST02091"; transcript_id "XUT_14F-190"; -chrXIV Steinmetz_2013 transcript 503631 505611 . + . gene_id "ST02092"; transcript_id "YNL065W"; -chrXIV Steinmetz_2013 transcript 507634 508745 . + . gene_id "ST02093"; transcript_id "YNL063W"; -chrXIV Steinmetz_2013 transcript 510497 512532 . + . gene_id "ST02094"; transcript_id "YNL061W"; -chrXIV Steinmetz_2013 transcript 517224 518009 . + . gene_id "ST02095"; transcript_id "YNL056W"; -chrXIV Steinmetz_2013 transcript 529822 531545 . + . gene_id "ST02096"; transcript_id "YNL053W"; -chrXIV Steinmetz_2013 transcript 531694 532443 . + . gene_id "ST02097"; transcript_id "YNL052W"; -chrXIV Steinmetz_2013 transcript 532653 533934 . + . gene_id "ST02098"; transcript_id "YNL051W"; -chrXIV Steinmetz_2013 transcript 538146 539919 . + . gene_id "ST02099"; transcript_id "YNL048W"; -chrXIV Steinmetz_2013 transcript 542076 542957 . + . gene_id "ST02100"; transcript_id "YNL046W"; -chrXIV Steinmetz_2013 transcript 542953 545045 . + . gene_id "ST02101"; transcript_id "YNL045W"; -chrXIV Steinmetz_2013 transcript 545197 546045 . + . gene_id "ST02102"; transcript_id "YNL044W"; -chrXIV Steinmetz_2013 transcript 546214 546727 . + . gene_id "ST02103"; transcript_id "XUT_14F-214"; -chrXIV Steinmetz_2013 transcript 548011 549393 . + . gene_id "ST02104"; transcript_id "YNL042W"; -chrXIV Steinmetz_2013 transcript 553351 554903 . + . gene_id "ST02105"; transcript_id "YNL040W"; -chrXIV Steinmetz_2013 transcript 555030 556885 . + . gene_id "ST02106"; transcript_id "YNL039W"; -chrXIV Steinmetz_2013 transcript 557009 557896 . + . gene_id "ST02107"; transcript_id "YNL038W"; -chrXIV Steinmetz_2013 transcript 559763 560534 . + . gene_id "ST02108"; transcript_id "YNL036W"; -chrXIV Steinmetz_2013 transcript 572987 573964 . + . gene_id "ST02109"; transcript_id "YNL033W"; -chrXIV Steinmetz_2013 transcript 574366 575481 . + . gene_id "ST02110"; transcript_id "YNL032W"; -chrXIV Steinmetz_2013 transcript 576697 577214 . + . gene_id "ST02111"; transcript_id "YNL030W"; -chrXIV Steinmetz_2013 transcript 579471 581721 . + . gene_id "ST02112"; transcript_id "YNL027W"; -chrXIV Steinmetz_2013 transcript 581901 583496 . + . gene_id "ST02113"; transcript_id "YNL026W"; -chrXIV Steinmetz_2013 transcript 587290 588325 . + . gene_id "ST02114"; transcript_id "SUT335"; -chrXIV Steinmetz_2013 transcript 593167 595480 . + . gene_id "ST02115"; transcript_id "YNL021W"; -chrXIV Steinmetz_2013 transcript 595505 596951 . + . gene_id "ST02116"; transcript_id "SUT336"; -chrXIV Steinmetz_2013 transcript 602854 604295 . + . gene_id "ST02117"; transcript_id "YNL016W"; -chrXIV Steinmetz_2013 transcript 605331 605699 . + . gene_id "ST02118"; transcript_id "YNL015W"; -chrXIV Steinmetz_2013 transcript 609675 611824 . + . gene_id "ST02119"; transcript_id "YNL012W"; -chrXIV Steinmetz_2013 transcript 613596 614471 . + . gene_id "ST02120"; transcript_id "YNL010W"; -chrXIV Steinmetz_2013 transcript 614787 616928 . + . gene_id "ST02121"; transcript_id "YNL009W"; -chrXIV Steinmetz_2013 transcript 620057 621325 . + . gene_id "ST02122"; transcript_id "YNL006W"; -chrXIV Steinmetz_2013 transcript 622895 624750 . + . gene_id "ST02123"; transcript_id "YNL004W"; -chrXIV Steinmetz_2013 transcript 624887 625353 . + . gene_id "ST02124"; transcript_id "XUT_14F-255"; -chrXIV Steinmetz_2013 transcript 627393 628683 . + . gene_id "ST02125"; transcript_id "YNL001W"; -chrXIV Steinmetz_2013 transcript 631206 631806 . + . gene_id "ST02126"; transcript_id "YNR001W-A"; -chrXIV Steinmetz_2013 transcript 632805 634000 . + . gene_id "ST02127"; transcript_id "SUT338"; -chrXIV Steinmetz_2013 transcript 635917 636789 . + . gene_id "ST02128"; transcript_id "YNR004W"; -chrXIV Steinmetz_2013 transcript 636958 638981 . + . gene_id "ST02129"; transcript_id "YNR006W"; -chrXIV Steinmetz_2013 transcript 640365 642626 . + . gene_id "ST02130"; transcript_id "YNR008W"; -chrXIV Steinmetz_2013 transcript 642648 643521 . + . gene_id "ST02131"; transcript_id "YNR009W"; -chrXIV Steinmetz_2013 transcript 643702 644310 . + . gene_id "ST02132"; transcript_id "YNR010W"; -chrXIV Steinmetz_2013 transcript 647340 649016 . + . gene_id "ST02133"; transcript_id "YNR012W"; -chrXIV Steinmetz_2013 transcript 652453 653272 . + . gene_id "ST02134"; transcript_id "YNR014W"; -chrXIV Steinmetz_2013 transcript 653363 654641 . + . gene_id "ST02135"; transcript_id "YNR015W"; -chrXIV Steinmetz_2013 transcript 662716 663719 . + . gene_id "ST02136"; transcript_id "YNR017W"; -chrXIV Steinmetz_2013 transcript 664220 665070 . + . gene_id "ST02137"; transcript_id "YNR018W"; -chrXIV Steinmetz_2013 transcript 668350 669775 . + . gene_id "ST02138"; transcript_id "YNR021W"; -chrXIV Steinmetz_2013 transcript 670373 672207 . + . gene_id "ST02139"; transcript_id "YNR023W"; -chrXIV Steinmetz_2013 transcript 672393 673096 . + . gene_id "ST02140"; transcript_id "YNR024W"; -chrXIV Steinmetz_2013 transcript 674854 676129 . + . gene_id "ST02141"; transcript_id "YNR027W"; -chrXIV Steinmetz_2013 transcript 676090 677193 . + . gene_id "ST02142"; transcript_id "YNR028W"; -chrXIV Steinmetz_2013 transcript 678738 680608 . + . gene_id "ST02143"; transcript_id "YNR030W"; -chrXIV Steinmetz_2013 transcript 685905 687243 . + . gene_id "ST02144"; transcript_id "YNR032W"; -chrXIV Steinmetz_2013 transcript 687629 690063 . + . gene_id "ST02145"; transcript_id "YNR033W"; -chrXIV Steinmetz_2013 transcript 690209 691534 . + . gene_id "ST02146"; transcript_id "YNR034W"; -chrXIV Steinmetz_2013 transcript 692489 692960 . + . gene_id "ST02147"; transcript_id "YNR034W-A"; -chrXIV Steinmetz_2013 transcript 695591 697632 . + . gene_id "ST02148"; transcript_id "YNR038W"; -chrXIV Steinmetz_2013 transcript 699690 700525 . + . gene_id "ST02149"; transcript_id "YNR040W"; -chrXIV Steinmetz_2013 transcript 701875 703232 . + . gene_id "ST02150"; transcript_id "YNR043W"; -chrXIV Steinmetz_2013 transcript 703582 705945 . + . gene_id "ST02151"; transcript_id "YNR044W"; -chrXIV Steinmetz_2013 transcript 706108 707657 . + . gene_id "ST02152"; transcript_id "YNR045W"; -chrXIV Steinmetz_2013 transcript 707776 708337 . + . gene_id "ST02153"; transcript_id "YNR046W"; -chrXIV Steinmetz_2013 transcript 708458 711463 . + . gene_id "ST02154"; transcript_id "YNR047W"; -chrXIV Steinmetz_2013 transcript 711571 712999 . + . gene_id "ST02155"; transcript_id "YNR048W"; -chrXIV Steinmetz_2013 transcript 724489 726018 . + . gene_id "ST02156"; transcript_id "SUT339"; -chrXIV Steinmetz_2013 transcript 728417 730324 . + . gene_id "ST02157"; transcript_id "SUT341"; -chrXIV Steinmetz_2013 transcript 730810 731320 . + . gene_id "ST02158"; transcript_id "CUT352"; -chrXIV Steinmetz_2013 transcript 731322 733352 . + . gene_id "ST02159"; transcript_id "SUT342"; -chrXIV Steinmetz_2013 transcript 734025 735763 . + . gene_id "ST02160"; transcript_id "YNR058W"; -chrXIV Steinmetz_2013 transcript 736696 738636 . + . gene_id "ST02161"; transcript_id "YNR059W"; -chrXIV Steinmetz_2013 transcript 739921 742170 . + . gene_id "ST02162"; transcript_id "YNR060W"; -chrXIV Steinmetz_2013 transcript 742318 742600 . + . gene_id "ST02163"; transcript_id "SUT343"; -chrXIV Steinmetz_2013 transcript 742350 742641 . + . gene_id "ST02164"; transcript_id "XUT_14F-302"; -chrXIV Steinmetz_2013 transcript 743793 745915 . + . gene_id "ST02165"; transcript_id "SUT344"; -chrXIV Steinmetz_2013 transcript 746862 749767 . + . gene_id "ST02166"; transcript_id "YNR063W"; -chrXIV Steinmetz_2013 transcript 763151 763938 . + . gene_id "ST02167"; transcript_id "CUT353"; -chrXIV Steinmetz_2013 transcript 763436 763904 . + . gene_id "ST02168"; transcript_id "XUT_14F-319"; -chrXIV Steinmetz_2013 transcript 764280 764798 . + . gene_id "ST02169"; transcript_id "SUT346"; -chrXIV Steinmetz_2013 transcript 770229 771450 . + . gene_id "ST02170"; transcript_id "XUT_14F-324"; -chrXIV Steinmetz_2013 transcript 772120 774441 . + . gene_id "ST02171"; transcript_id "YNR072W"; -chrXV Steinmetz_2013 transcript 5463 6897 . - . gene_id "ST02172"; transcript_id "SUT761"; -chrXV Steinmetz_2013 transcript 5463 7920 . - . gene_id "ST02173"; transcript_id "XUT_15R-8"; -chrXV Steinmetz_2013 transcript 14702 15594 . - . gene_id "ST02174"; transcript_id "YOL159C-A"; -chrXV Steinmetz_2013 transcript 17212 17814 . - . gene_id "ST02175"; transcript_id "YOL159C"; -chrXV Steinmetz_2013 transcript 19339 21437 . - . gene_id "ST02176"; transcript_id "YOL158C"; -chrXV Steinmetz_2013 transcript 22374 24348 . - . gene_id "ST02177"; transcript_id "YOL157C"; -chrXV Steinmetz_2013 transcript 28589 31660 . - . gene_id "ST02178"; transcript_id "YOL155C"; -chrXV Steinmetz_2013 transcript 34523 35703 . - . gene_id "ST02179"; transcript_id "SUT763"; -chrXV Steinmetz_2013 transcript 38911 40050 . - . gene_id "ST02180"; transcript_id "SUT764"; -chrXV Steinmetz_2013 transcript 38859 40575 . - . gene_id "ST02181"; transcript_id "XUT_15R-33"; -chrXV Steinmetz_2013 transcript 47782 48665 . - . gene_id "ST02182"; transcript_id "YOL147C"; -chrXV Steinmetz_2013 transcript 49418 52839 . - . gene_id "ST02183"; transcript_id "YOL145C"; -chrXV Steinmetz_2013 transcript 54522 55142 . - . gene_id "ST02184"; transcript_id "YOL143C"; -chrXV Steinmetz_2013 transcript 60263 61104 . - . gene_id "ST02185"; transcript_id "YOL139C"; -chrXV Steinmetz_2013 transcript 67227 68976 . - . gene_id "ST02186"; transcript_id "YOL136C"; -chrXV Steinmetz_2013 transcript 69216 70068 . - . gene_id "ST02187"; transcript_id "YOL135C"; -chrXV Steinmetz_2013 transcript 71543 72302 . - . gene_id "ST02188"; transcript_id "XUT_15R-47"; -chrXV Steinmetz_2013 transcript 72905 73908 . - . gene_id "ST02189"; transcript_id "XUT_15R-51"; -chrXV Steinmetz_2013 transcript 73492 73918 . - . gene_id "ST02190"; transcript_id "SUT766"; -chrXV Steinmetz_2013 transcript 78135 79480 . - . gene_id "ST02191"; transcript_id "YOL128C"; -chrXV Steinmetz_2013 transcript 81548 82996 . - . gene_id "ST02192"; transcript_id "YOL126C"; -chrXV Steinmetz_2013 transcript 85398 86785 . - . gene_id "ST02193"; transcript_id "YOL124C"; -chrXV Steinmetz_2013 transcript 89565 91459 . - . gene_id "ST02194"; transcript_id "YOL122C"; -chrXV Steinmetz_2013 transcript 91947 92870 . - . gene_id "ST02195"; transcript_id "YOL121C"; -chrXV Steinmetz_2013 transcript 93307 94422 . - . gene_id "ST02196"; transcript_id "YOL120C"; -chrXV Steinmetz_2013 transcript 94709 96397 . - . gene_id "ST02197"; transcript_id "YOL119C"; -chrXV Steinmetz_2013 transcript 99714 101263 . - . gene_id "ST02198"; transcript_id "XUT_15R-66"; -chrXV Steinmetz_2013 transcript 101058 101300 . - . gene_id "ST02199"; transcript_id "SUT767"; -chrXV Steinmetz_2013 transcript 103276 103942 . - . gene_id "ST02200"; transcript_id "YOL114C"; -chrXV Steinmetz_2013 transcript 105707 106298 . - . gene_id "ST02201"; transcript_id "CUT824"; -chrXV Steinmetz_2013 transcript 108187 108945 . - . gene_id "ST02202"; transcript_id "YOL111C"; -chrXV Steinmetz_2013 transcript 111216 111890 . - . gene_id "ST02203"; transcript_id "YOL108C"; -chrXV Steinmetz_2013 transcript 114011 116073 . - . gene_id "ST02204"; transcript_id "YOL105C"; -chrXV Steinmetz_2013 transcript 125903 126690 . - . gene_id "ST02205"; transcript_id "YOL102C"; -chrXV Steinmetz_2013 transcript 126873 127945 . - . gene_id "ST02206"; transcript_id "YOL101C"; -chrXV Steinmetz_2013 transcript 136440 137850 . - . gene_id "ST02207"; transcript_id "YOL097C"; -chrXV Steinmetz_2013 transcript 137973 139074 . - . gene_id "ST02208"; transcript_id "YOL096C"; -chrXV Steinmetz_2013 transcript 139162 141380 . - . gene_id "ST02209"; transcript_id "YOL095C"; -chrXV Steinmetz_2013 transcript 141541 142594 . - . gene_id "ST02210"; transcript_id "YOL094C"; -chrXV Steinmetz_2013 transcript 150226 153552 . - . gene_id "ST02211"; transcript_id "YOL089C"; -chrXV Steinmetz_2013 transcript 153714 154767 . - . gene_id "ST02212"; transcript_id "YOL088C"; -chrXV Steinmetz_2013 transcript 155152 158918 . - . gene_id "ST02213"; transcript_id "YOL087C"; -chrXV Steinmetz_2013 transcript 159459 160632 . - . gene_id "ST02214"; transcript_id "YOL086C"; -chrXV Steinmetz_2013 transcript 167492 167868 . - . gene_id "ST02215"; transcript_id "CUT827"; -chrXV Steinmetz_2013 transcript 170133 170838 . - . gene_id "ST02216"; transcript_id "XUT_15R-101"; -chrXV Steinmetz_2013 transcript 180404 181471 . - . gene_id "ST02217"; transcript_id "YOL080C"; -chrXV Steinmetz_2013 transcript 185772 186751 . - . gene_id "ST02218"; transcript_id "YOL077C"; -chrXV Steinmetz_2013 transcript 193781 194836 . - . gene_id "ST02219"; transcript_id "YOL073C"; -chrXV Steinmetz_2013 transcript 197008 198733 . - . gene_id "ST02220"; transcript_id "YOL070C"; -chrXV Steinmetz_2013 transcript 200211 201945 . - . gene_id "ST02221"; transcript_id "YOL068C"; -chrXV Steinmetz_2013 transcript 202632 204558 . - . gene_id "ST02222"; transcript_id "YOL066C"; -chrXV Steinmetz_2013 transcript 204589 205912 . - . gene_id "ST02223"; transcript_id "YOL065C"; -chrXV Steinmetz_2013 transcript 205996 207208 . - . gene_id "ST02224"; transcript_id "YOL064C"; -chrXV Steinmetz_2013 transcript 207342 210338 . - . gene_id "ST02225"; transcript_id "YOL063C"; -chrXV Steinmetz_2013 transcript 210450 212015 . - . gene_id "ST02226"; transcript_id "YOL062C"; -chrXV Steinmetz_2013 transcript 213742 216203 . - . gene_id "ST02227"; transcript_id "YOL060C"; -chrXV Steinmetz_2013 transcript 218897 220558 . - . gene_id "ST02228"; transcript_id "XUT_15R-116"; -chrXV Steinmetz_2013 transcript 219144 220558 . - . gene_id "ST02229"; transcript_id "SUT768"; -chrXV Steinmetz_2013 transcript 224323 226122 . - . gene_id "ST02230"; transcript_id "YOL055C"; -chrXV Steinmetz_2013 transcript 231294 231788 . - . gene_id "ST02231"; transcript_id "YOL052C-A"; -chrXV Steinmetz_2013 transcript 232331 233701 . - . gene_id "ST02232"; transcript_id "YOL052C"; -chrXV Steinmetz_2013 transcript 240131 241358 . - . gene_id "ST02233"; transcript_id "YOL048C"; -chrXV Steinmetz_2013 transcript 248300 249617 . - . gene_id "ST02234"; transcript_id "YOL043C"; -chrXV Steinmetz_2013 transcript 251060 252697 . - . gene_id "ST02235"; transcript_id "YOL041C"; -chrXV Steinmetz_2013 transcript 253057 253629 . - . gene_id "ST02236"; transcript_id "YOL040C"; -chrXV Steinmetz_2013 transcript 254739 255085 . - . gene_id "ST02237"; transcript_id "YOL038C-A"; -chrXV Steinmetz_2013 transcript 256626 257077 . - . gene_id "ST02238"; transcript_id "YOL037C"; -chrXV Steinmetz_2013 transcript 266148 267581 . - . gene_id "ST02239"; transcript_id "YOL031C"; -chrXV Steinmetz_2013 transcript 269806 270438 . - . gene_id "ST02240"; transcript_id "YOL029C"; -chrXV Steinmetz_2013 transcript 271773 273727 . - . gene_id "ST02241"; transcript_id "YOL027C"; -chrXV Steinmetz_2013 transcript 273921 274364 . - . gene_id "ST02242"; transcript_id "YOL026C"; -chrXV Steinmetz_2013 transcript 280168 281528 . - . gene_id "ST02243"; transcript_id "YOL022C"; -chrXV Steinmetz_2013 transcript 282323 285479 . - . gene_id "ST02244"; transcript_id "YOL021C"; -chrXV Steinmetz_2013 transcript 290682 292139 . - . gene_id "ST02245"; transcript_id "YOL018C"; -chrXV Steinmetz_2013 transcript 294656 296226 . - . gene_id "ST02246"; transcript_id "YOL016C"; -chrXV Steinmetz_2013 transcript 301326 303202 . - . gene_id "ST02247"; transcript_id "YOL013C"; -chrXV Steinmetz_2013 transcript 303419 304081 . - . gene_id "ST02248"; transcript_id "YOL012C"; -chrXV Steinmetz_2013 transcript 309265 310141 . - . gene_id "ST02249"; transcript_id "YOL009C"; -chrXV Steinmetz_2013 transcript 310990 312449 . - . gene_id "ST02250"; transcript_id "YOL007C"; -chrXV Steinmetz_2013 transcript 312919 315414 . - . gene_id "ST02251"; transcript_id "YOL006C"; -chrXV Steinmetz_2013 transcript 315762 316212 . - . gene_id "ST02252"; transcript_id "YOL005C"; -chrXV Steinmetz_2013 transcript 321733 323019 . - . gene_id "ST02253"; transcript_id "YOL003C"; -chrXV Steinmetz_2013 transcript 323337 324371 . - . gene_id "ST02254"; transcript_id "YOL002C"; -chrXV Steinmetz_2013 transcript 324643 325092 . - . gene_id "ST02255"; transcript_id "XUT_15R-148"; -chrXV Steinmetz_2013 transcript 326168 326438 . - . gene_id "ST02256"; transcript_id "SUT769"; -chrXV Steinmetz_2013 transcript 332996 333372 . - . gene_id "ST02257"; transcript_id "CUT833"; -chrXV Steinmetz_2013 transcript 334403 337377 . - . gene_id "ST02258"; transcript_id "YOR005C"; -chrXV Steinmetz_2013 transcript 337608 338661 . - . gene_id "ST02259"; transcript_id "YOR006C"; -chrXV Steinmetz_2013 transcript 338842 339983 . - . gene_id "ST02260"; transcript_id "YOR007C"; -chrXV Steinmetz_2013 transcript 340965 342631 . - . gene_id "ST02261"; transcript_id "YOR008C"; -chrXV Steinmetz_2013 transcript 346103 346997 . - . gene_id "ST02262"; transcript_id "YOR010C"; -chrXV Steinmetz_2013 transcript 348987 349629 . - . gene_id "ST02263"; transcript_id "SUT770"; -chrXV Steinmetz_2013 transcript 355797 357222 . - . gene_id "ST02264"; transcript_id "XUT_15R-169"; -chrXV Steinmetz_2013 transcript 356175 357215 . - . gene_id "ST02265"; transcript_id "SUT772"; -chrXV Steinmetz_2013 transcript 360304 361222 . - . gene_id "ST02266"; transcript_id "YOR016C"; -chrXV Steinmetz_2013 transcript 370423 370882 . - . gene_id "ST02267"; transcript_id "YOR020C"; -chrXV Steinmetz_2013 transcript 369641 370167 . - . gene_id "ST02268"; transcript_id "XUT_15R-178"; -chrXV Steinmetz_2013 transcript 371112 371370 . - . gene_id "ST02269"; transcript_id "SUT774"; -chrXV Steinmetz_2013 transcript 372645 373479 . - . gene_id "ST02270"; transcript_id "YOR021C"; -chrXV Steinmetz_2013 transcript 373699 375877 . - . gene_id "ST02271"; transcript_id "YOR022C"; -chrXV Steinmetz_2013 transcript 375959 377813 . - . gene_id "ST02272"; transcript_id "YOR023C"; -chrXV Steinmetz_2013 transcript 383208 384682 . - . gene_id "ST02273"; transcript_id "YOR028C"; -chrXV Steinmetz_2013 transcript 383208 383564 . - . gene_id "ST02274"; transcript_id "XUT_15R-187"; -chrXV Steinmetz_2013 transcript 389660 391247 . - . gene_id "ST02275"; transcript_id "YOR032C"; -chrXV Steinmetz_2013 transcript 392358 394667 . - . gene_id "ST02276"; transcript_id "YOR033C"; -chrXV Steinmetz_2013 transcript 394732 397305 . - . gene_id "ST02277"; transcript_id "YOR034C"; -chrXV Steinmetz_2013 transcript 400283 401404 . - . gene_id "ST02278"; transcript_id "SUT776"; -chrXV Steinmetz_2013 transcript 402665 405439 . - . gene_id "ST02279"; transcript_id "YOR038C"; -chrXV Steinmetz_2013 transcript 406826 407646 . - . gene_id "ST02280"; transcript_id "CUT839"; -chrXV Steinmetz_2013 transcript 407924 410009 . - . gene_id "ST02281"; transcript_id "YOR041C"; -chrXV Steinmetz_2013 transcript 414403 415939 . - . gene_id "ST02282"; transcript_id "YOR046C"; -chrXV Steinmetz_2013 transcript 416170 417814 . - . gene_id "ST02283"; transcript_id "YOR047C"; -chrXV Steinmetz_2013 transcript 418521 421682 . - . gene_id "ST02284"; transcript_id "YOR048C"; -chrXV Steinmetz_2013 transcript 422475 423917 . - . gene_id "ST02285"; transcript_id "YOR049C"; -chrXV Steinmetz_2013 transcript 424008 424620 . - . gene_id "ST02286"; transcript_id "YOR050C"; -chrXV Steinmetz_2013 transcript 424674 426155 . - . gene_id "ST02287"; transcript_id "YOR051C"; -chrXV Steinmetz_2013 transcript 426519 427327 . - . gene_id "ST02288"; transcript_id "YOR052C"; -chrXV Steinmetz_2013 transcript 427757 429998 . - . gene_id "ST02289"; transcript_id "YOR054C"; -chrXV Steinmetz_2013 transcript 430188 431695 . - . gene_id "ST02290"; transcript_id "YOR056C"; -chrXV Steinmetz_2013 transcript 433440 436481 . - . gene_id "ST02291"; transcript_id "YOR058C"; -chrXV Steinmetz_2013 transcript 438851 440293 . - . gene_id "ST02292"; transcript_id "YOR059C"; -chrXV Steinmetz_2013 transcript 440307 441200 . - . gene_id "ST02293"; transcript_id "YOR060C"; -chrXV Steinmetz_2013 transcript 442642 443574 . - . gene_id "ST02294"; transcript_id "YOR062C"; -chrXV Steinmetz_2013 transcript 445992 446739 . - . gene_id "ST02295"; transcript_id "YOR064C"; -chrXV Steinmetz_2013 transcript 447115 448233 . - . gene_id "ST02296"; transcript_id "SUT777"; -chrXV Steinmetz_2013 transcript 451644 453503 . - . gene_id "ST02297"; transcript_id "YOR067C"; -chrXV Steinmetz_2013 transcript 455822 457965 . - . gene_id "ST02298"; transcript_id "YOR070C"; -chrXV Steinmetz_2013 transcript 459252 461317 . - . gene_id "ST02299"; transcript_id "YOR071C"; -chrXV Steinmetz_2013 transcript 466591 467621 . - . gene_id "ST02300"; transcript_id "YOR074C"; -chrXV Steinmetz_2013 transcript 469298 471633 . - . gene_id "ST02301"; transcript_id "YOR076C"; -chrXV Steinmetz_2013 transcript 473338 474451 . - . gene_id "ST02302"; transcript_id "YOR079C"; -chrXV Steinmetz_2013 transcript 476810 479225 . - . gene_id "ST02303"; transcript_id "YOR081C"; -chrXV Steinmetz_2013 transcript 483102 486972 . - . gene_id "ST02304"; transcript_id "YOR086C"; -chrXV Steinmetz_2013 transcript 489904 490905 . - . gene_id "ST02305"; transcript_id "YOR089C"; -chrXV Steinmetz_2013 transcript 491040 492966 . - . gene_id "ST02306"; transcript_id "YOR090C"; -chrXV Steinmetz_2013 transcript 503436 504398 . - . gene_id "ST02307"; transcript_id "YOR095C"; -chrXV Steinmetz_2013 transcript 506875 507550 . - . gene_id "ST02308"; transcript_id "YOR097C"; -chrXV Steinmetz_2013 transcript 507811 511259 . - . gene_id "ST02309"; transcript_id "YOR098C"; -chrXV Steinmetz_2013 transcript 513030 514306 . - . gene_id "ST02310"; transcript_id "YOR100C"; -chrXV Steinmetz_2013 transcript 516358 516874 . - . gene_id "ST02311"; transcript_id "YOR103C"; -chrXV Steinmetz_2013 transcript 521431 522551 . - . gene_id "ST02312"; transcript_id "XUT_15R-249"; -chrXV Steinmetz_2013 transcript 521449 522557 . - . gene_id "ST02313"; transcript_id "SUT779"; -chrXV Steinmetz_2013 transcript 538571 539516 . - . gene_id "ST02314"; transcript_id "YOR115C"; -chrXV Steinmetz_2013 transcript 539630 544352 . - . gene_id "ST02315"; transcript_id "YOR116C"; -chrXV Steinmetz_2013 transcript 548491 550290 . - . gene_id "ST02316"; transcript_id "YOR119C"; -chrXV Steinmetz_2013 transcript 552112 552915 . - . gene_id "ST02317"; transcript_id "YOR122C"; -chrXV Steinmetz_2013 transcript 553116 554643 . - . gene_id "ST02318"; transcript_id "YOR123C"; -chrXV Steinmetz_2013 transcript 554745 558749 . - . gene_id "ST02319"; transcript_id "YOR124C"; -chrXV Steinmetz_2013 transcript 558892 559797 . - . gene_id "ST02320"; transcript_id "YOR125C"; -chrXV Steinmetz_2013 transcript 559856 560708 . - . gene_id "ST02321"; transcript_id "YOR126C"; -chrXV Steinmetz_2013 transcript 564422 566217 . - . gene_id "ST02322"; transcript_id "YOR128C"; -chrXV Steinmetz_2013 transcript 566655 569636 . - . gene_id "ST02323"; transcript_id "YOR129C"; -chrXV Steinmetz_2013 transcript 569861 570812 . - . gene_id "ST02324"; transcript_id "YOR130C"; -chrXV Steinmetz_2013 transcript 572090 572928 . - . gene_id "ST02325"; transcript_id "YOR131C"; -chrXV Steinmetz_2013 transcript 578506 579743 . - . gene_id "ST02326"; transcript_id "XUT_15R-265"; -chrXV Steinmetz_2013 transcript 578945 579791 . - . gene_id "ST02327"; transcript_id "SUT782"; -chrXV Steinmetz_2013 transcript 581685 584035 . - . gene_id "ST02328"; transcript_id "YOR137C"; -chrXV Steinmetz_2013 transcript 584237 586394 . - . gene_id "ST02329"; transcript_id "YOR138C"; -chrXV Steinmetz_2013 transcript 589658 592608 . - . gene_id "ST02330"; transcript_id "YOR141C"; -chrXV Steinmetz_2013 transcript 601360 602416 . - . gene_id "ST02331"; transcript_id "YOR143C"; -chrXV Steinmetz_2013 transcript 602443 605093 . - . gene_id "ST02332"; transcript_id "YOR144C"; -chrXV Steinmetz_2013 transcript 605258 606192 . - . gene_id "ST02333"; transcript_id "YOR145C"; -chrXV Steinmetz_2013 transcript 608556 609238 . - . gene_id "ST02334"; transcript_id "YOR148C"; -chrXV Steinmetz_2013 transcript 609420 611449 . - . gene_id "ST02335"; transcript_id "YOR149C"; -chrXV Steinmetz_2013 transcript 612940 616933 . - . gene_id "ST02336"; transcript_id "YOR151C"; -chrXV Steinmetz_2013 transcript 617352 618477 . - . gene_id "ST02337"; transcript_id "YOR152C"; -chrXV Steinmetz_2013 transcript 626512 628012 . - . gene_id "ST02338"; transcript_id "YOR155C"; -chrXV Steinmetz_2013 transcript 628107 630707 . - . gene_id "ST02339"; transcript_id "YOR156C"; -chrXV Steinmetz_2013 transcript 630914 631816 . - . gene_id "ST02340"; transcript_id "YOR157C"; -chrXV Steinmetz_2013 transcript 633038 633624 . - . gene_id "ST02341"; transcript_id "YOR159C"; -chrXV Steinmetz_2013 transcript 632566 632869 . - . gene_id "ST02342"; transcript_id "CUT850"; -chrXV Steinmetz_2013 transcript 636846 638708 . - . gene_id "ST02343"; transcript_id "YOR161C"; -chrXV Steinmetz_2013 transcript 639409 642180 . - . gene_id "ST02344"; transcript_id "YOR162C"; -chrXV Steinmetz_2013 transcript 642302 642595 . - . gene_id "ST02345"; transcript_id "XUT_15R-284"; -chrXV Steinmetz_2013 transcript 643179 644352 . - . gene_id "ST02346"; transcript_id "YOR164C"; -chrXV Steinmetz_2013 transcript 646953 648557 . - . gene_id "ST02347"; transcript_id "YOR166C"; -chrXV Steinmetz_2013 transcript 648673 649019 . - . gene_id "ST02348"; transcript_id "YOR167C"; -chrXV Steinmetz_2013 transcript 651928 653952 . - . gene_id "ST02349"; transcript_id "YOR171C"; -chrXV Steinmetz_2013 transcript 659653 661752 . - . gene_id "ST02350"; transcript_id "YOR175C"; -chrXV Steinmetz_2013 transcript 671594 672440 . - . gene_id "ST02351"; transcript_id "YOR179C"; -chrXV Steinmetz_2013 transcript 674094 675668 . - . gene_id "ST02352"; transcript_id "YOR180C"; -chrXV Steinmetz_2013 transcript 678089 678821 . - . gene_id "ST02353"; transcript_id "YOR182C"; -chrXV Steinmetz_2013 transcript 681378 682164 . - . gene_id "ST02354"; transcript_id "YOR185C"; -chrXV Steinmetz_2013 transcript 690116 690410 . - . gene_id "ST02355"; transcript_id "SUT784"; -chrXV Steinmetz_2013 transcript 690126 692113 . - . gene_id "ST02356"; transcript_id "XUT_15R-314"; -chrXV Steinmetz_2013 transcript 690717 692189 . - . gene_id "ST02357"; transcript_id "SUT785"; -chrXV Steinmetz_2013 transcript 698029 700569 . - . gene_id "ST02358"; transcript_id "YOR192C"; -chrXV Steinmetz_2013 transcript 711614 712612 . - . gene_id "ST02359"; transcript_id "YOR194C"; -chrXV Steinmetz_2013 transcript 715438 716861 . - . gene_id "ST02360"; transcript_id "YOR196C"; -chrXV Steinmetz_2013 transcript 718429 720254 . - . gene_id "ST02361"; transcript_id "YOR198C"; -chrXV Steinmetz_2013 transcript 720396 721749 . - . gene_id "ST02362"; transcript_id "YOR201C"; -chrXV Steinmetz_2013 transcript 721849 722643 . - . gene_id "ST02363"; transcript_id "SUT786"; -chrXV Steinmetz_2013 transcript 725479 727242 . - . gene_id "ST02364"; transcript_id "YOR205C"; -chrXV Steinmetz_2013 transcript 729879 733522 . - . gene_id "ST02365"; transcript_id "YOR207C"; -chrXV Steinmetz_2013 transcript 736306 737877 . - . gene_id "ST02366"; transcript_id "YOR209C"; -chrXV Steinmetz_2013 transcript 738819 741772 . - . gene_id "ST02367"; transcript_id "YOR211C"; -chrXV Steinmetz_2013 transcript 744191 745399 . - . gene_id "ST02368"; transcript_id "YOR213C"; -chrXV Steinmetz_2013 transcript 746582 747312 . - . gene_id "ST02369"; transcript_id "YOR215C"; -chrXV Steinmetz_2013 transcript 747422 749038 . - . gene_id "ST02370"; transcript_id "YOR216C"; -chrXV Steinmetz_2013 transcript 756307 757610 . - . gene_id "ST02371"; transcript_id "YOR221C"; -chrXV Steinmetz_2013 transcript 760689 761301 . - . gene_id "ST02372"; transcript_id "YOR224C"; -chrXV Steinmetz_2013 transcript 761457 762105 . - . gene_id "ST02373"; transcript_id "YOR226C"; -chrXV Steinmetz_2013 transcript 766736 767997 . - . gene_id "ST02374"; transcript_id "YOR228C"; -chrXV Steinmetz_2013 transcript 770403 772242 . - . gene_id "ST02375"; transcript_id "XUT_15R-344"; -chrXV Steinmetz_2013 transcript 778479 779423 . - . gene_id "ST02376"; transcript_id "YOR234C"; -chrXV Steinmetz_2013 transcript 784129 784623 . - . gene_id "ST02377"; transcript_id "CUT862"; -chrXV Steinmetz_2013 transcript 790005 792258 . - . gene_id "ST02378"; transcript_id "YOR243C"; -chrXV Steinmetz_2013 transcript 793961 795560 . - . gene_id "ST02379"; transcript_id "YOR245C"; -chrXV Steinmetz_2013 transcript 795718 796856 . - . gene_id "ST02380"; transcript_id "YOR246C"; -chrXV Steinmetz_2013 transcript 798620 800752 . - . gene_id "ST02381"; transcript_id "YOR249C"; -chrXV Steinmetz_2013 transcript 800934 802342 . - . gene_id "ST02382"; transcript_id "YOR250C"; -chrXV Steinmetz_2013 transcript 802455 803487 . - . gene_id "ST02383"; transcript_id "YOR251C"; -chrXV Steinmetz_2013 transcript 804211 804797 . - . gene_id "ST02384"; transcript_id "SUT788"; -chrXV Steinmetz_2013 transcript 804939 807043 . - . gene_id "ST02385"; transcript_id "YOR254C"; -chrXV Steinmetz_2013 transcript 808151 810847 . - . gene_id "ST02386"; transcript_id "YOR256C"; -chrXV Steinmetz_2013 transcript 812335 813733 . - . gene_id "ST02387"; transcript_id "YOR259C"; -chrXV Steinmetz_2013 transcript 815838 817029 . - . gene_id "ST02388"; transcript_id "YOR261C"; -chrXV Steinmetz_2013 transcript 822407 825044 . - . gene_id "ST02389"; transcript_id "YOR267C"; -chrXV Steinmetz_2013 transcript 827925 830745 . - . gene_id "ST02390"; transcript_id "YOR270C"; -chrXV Steinmetz_2013 transcript 830989 832094 . - . gene_id "ST02391"; transcript_id "YOR271C"; -chrXV Steinmetz_2013 transcript 834260 836515 . - . gene_id "ST02392"; transcript_id "YOR273C"; -chrXV Steinmetz_2013 transcript 837581 838163 . - . gene_id "ST02393"; transcript_id "XUT_15R-366"; -chrXV Steinmetz_2013 transcript 838952 841077 . - . gene_id "ST02394"; transcript_id "YOR275C"; -chrXV Steinmetz_2013 transcript 843604 844741 . - . gene_id "ST02395"; transcript_id "YOR279C"; -chrXV Steinmetz_2013 transcript 844929 845804 . - . gene_id "ST02396"; transcript_id "YOR280C"; -chrXV Steinmetz_2013 transcript 846175 847145 . - . gene_id "ST02397"; transcript_id "YOR281C"; -chrXV Steinmetz_2013 transcript 848877 850080 . - . gene_id "ST02398"; transcript_id "XUT_15R-372"; -chrXV Steinmetz_2013 transcript 850873 851861 . - . gene_id "ST02399"; transcript_id "YOR287C"; -chrXV Steinmetz_2013 transcript 852043 853110 . - . gene_id "ST02400"; transcript_id "YOR288C"; -chrXV Steinmetz_2013 transcript 865592 866626 . - . gene_id "ST02401"; transcript_id "YOR292C"; -chrXV Steinmetz_2013 transcript 867915 868200 . - . gene_id "ST02402"; transcript_id "YOR293C-A"; -chrXV Steinmetz_2013 transcript 874614 875347 . - . gene_id "ST02403"; transcript_id "YOR297C"; -chrXV Steinmetz_2013 transcript 876366 876945 . - . gene_id "ST02404"; transcript_id "CUT866"; -chrXV Steinmetz_2013 transcript 876999 877729 . - . gene_id "ST02405"; transcript_id "YOR298C-A"; -chrXV Steinmetz_2013 transcript 881065 881987 . - . gene_id "ST02406"; transcript_id "XUT_15R-385"; -chrXV Steinmetz_2013 transcript 888178 888751 . - . gene_id "ST02407"; transcript_id "YOR304C-A"; -chrXV Steinmetz_2013 transcript 889805 891531 . - . gene_id "ST02408"; transcript_id "YOR306C"; -chrXV Steinmetz_2013 transcript 892432 894289 . - . gene_id "ST02409"; transcript_id "YOR307C"; -chrXV Steinmetz_2013 transcript 894440 896411 . - . gene_id "ST02410"; transcript_id "YOR308C"; -chrXV Steinmetz_2013 transcript 898847 899975 . - . gene_id "ST02411"; transcript_id "YOR311C"; -chrXV Steinmetz_2013 transcript 900164 901220 . - . gene_id "ST02412"; transcript_id "YOR312C"; -chrXV Steinmetz_2013 transcript 901647 903370 . - . gene_id "ST02413"; transcript_id "YOR313C"; -chrXV Steinmetz_2013 transcript 903277 903652 . - . gene_id "ST02414"; transcript_id "XUT_15R-399"; -chrXV Steinmetz_2013 transcript 906094 907706 . - . gene_id "ST02415"; transcript_id "YOR316C"; -chrXV Steinmetz_2013 transcript 908787 911649 . - . gene_id "ST02416"; transcript_id "XUT_15R-403"; -chrXV Steinmetz_2013 transcript 911615 912556 . - . gene_id "ST02417"; transcript_id "YOR318C"; -chrXV Steinmetz_2013 transcript 913526 915211 . - . gene_id "ST02418"; transcript_id "YOR320C"; -chrXV Steinmetz_2013 transcript 918527 921300 . - . gene_id "ST02419"; transcript_id "YOR322C"; -chrXV Steinmetz_2013 transcript 921452 922924 . - . gene_id "ST02420"; transcript_id "YOR323C"; -chrXV Steinmetz_2013 transcript 923097 925187 . - . gene_id "ST02421"; transcript_id "YOR324C"; -chrXV Steinmetz_2013 transcript 930615 931164 . - . gene_id "ST02422"; transcript_id "YOR327C"; -chrXV Steinmetz_2013 transcript 936625 939441 . - . gene_id "ST02423"; transcript_id "YOR329C"; -chrXV Steinmetz_2013 transcript 944152 944401 . - . gene_id "ST02424"; transcript_id "CUT868"; -chrXV Steinmetz_2013 transcript 944498 945041 . - . gene_id "ST02425"; transcript_id "YOR333C"; -chrXV Steinmetz_2013 transcript 946100 949226 . - . gene_id "ST02426"; transcript_id "YOR335C"; -chrXV Steinmetz_2013 transcript 953608 953934 . - . gene_id "ST02427"; transcript_id "CUT869"; -chrXV Steinmetz_2013 transcript 958111 958840 . - . gene_id "ST02428"; transcript_id "YOR339C"; -chrXV Steinmetz_2013 transcript 959085 960253 . - . gene_id "ST02429"; transcript_id "YOR340C"; -chrXV Steinmetz_2013 transcript 966586 967738 . - . gene_id "ST02430"; transcript_id "YOR342C"; -chrXV Steinmetz_2013 transcript 967833 968726 . - . gene_id "ST02431"; transcript_id "YOR343C"; -chrXV Steinmetz_2013 transcript 969301 970033 . - . gene_id "ST02432"; transcript_id "SUT795"; -chrXV Steinmetz_2013 transcript 977042 978201 . - . gene_id "ST02433"; transcript_id "YOR344C"; -chrXV Steinmetz_2013 transcript 976564 976967 . - . gene_id "ST02434"; transcript_id "XUT_15R-430"; -chrXV Steinmetz_2013 transcript 980983 981475 . - . gene_id "ST02435"; transcript_id "SUT796"; -chrXV Steinmetz_2013 transcript 984886 986560 . - . gene_id "ST02436"; transcript_id "YOR347C"; -chrXV Steinmetz_2013 transcript 986720 988797 . - . gene_id "ST02437"; transcript_id "YOR348C"; -chrXV Steinmetz_2013 transcript 992795 994888 . - . gene_id "ST02438"; transcript_id "YOR350C"; -chrXV Steinmetz_2013 transcript 1001031 1003250 . - . gene_id "ST02439"; transcript_id "YOR354C"; -chrXV Steinmetz_2013 transcript 1003549 1004109 . - . gene_id "ST02440"; transcript_id "CUT873"; -chrXV Steinmetz_2013 transcript 1009118 1009719 . - . gene_id "ST02441"; transcript_id "YOR357C"; -chrXV Steinmetz_2013 transcript 1013139 1015053 . - . gene_id "ST02442"; transcript_id "YOR360C"; -chrXV Steinmetz_2013 transcript 1017744 1018785 . - . gene_id "ST02443"; transcript_id "YOR362C"; -chrXV Steinmetz_2013 transcript 1019881 1023277 . - . gene_id "ST02444"; transcript_id "YOR363C"; -chrXV Steinmetz_2013 transcript 1026644 1027850 . - . gene_id "ST02445"; transcript_id "SUT800"; -chrXV Steinmetz_2013 transcript 1028095 1028693 . - . gene_id "ST02446"; transcript_id "YOR369C"; -chrXV Steinmetz_2013 transcript 1029021 1031334 . - . gene_id "ST02447"; transcript_id "YOR370C"; -chrXV Steinmetz_2013 transcript 1031405 1034301 . - . gene_id "ST02448"; transcript_id "YOR371C"; -chrXV Steinmetz_2013 transcript 1034474 1036513 . - . gene_id "ST02449"; transcript_id "YOR372C"; -chrXV Steinmetz_2013 transcript 1037968 1039429 . - . gene_id "ST02450"; transcript_id "XUT_15R-466"; -chrXV Steinmetz_2013 transcript 1041580 1043110 . - . gene_id "ST02451"; transcript_id "YOR375C"; -chrXV Steinmetz_2013 transcript 1044488 1045963 . - . gene_id "ST02452"; transcript_id "XUT_15R-477"; -chrXV Steinmetz_2013 transcript 1054512 1055046 . - . gene_id "ST02453"; transcript_id "XUT_15R-485"; -chrXV Steinmetz_2013 transcript 1059394 1059953 . - . gene_id "ST02454"; transcript_id "XUT_15R-486"; -chrXV Steinmetz_2013 transcript 1060241 1061102 . - . gene_id "ST02455"; transcript_id "YOR383C"; -chrXV Steinmetz_2013 transcript 5897 8205 . + . gene_id "ST02456"; transcript_id "YOL164W"; -chrXV Steinmetz_2013 transcript 15783 16831 . + . gene_id "ST02457"; transcript_id "XUT_15F-6"; -chrXV Steinmetz_2013 transcript 18109 18737 . + . gene_id "ST02458"; transcript_id "XUT_15F-9"; -chrXV Steinmetz_2013 transcript 21165 22267 . + . gene_id "ST02459"; transcript_id "XUT_15F-10"; -chrXV Steinmetz_2013 transcript 21913 22283 . + . gene_id "ST02460"; transcript_id "SUT349"; -chrXV Steinmetz_2013 transcript 28347 28657 . + . gene_id "ST02461"; transcript_id "XUT_15F-14"; -chrXV Steinmetz_2013 transcript 34624 35499 . + . gene_id "ST02462"; transcript_id "YOL154W"; -chrXV Steinmetz_2013 transcript 36017 38668 . + . gene_id "ST02463"; transcript_id "SUT352"; -chrXV Steinmetz_2013 transcript 40738 42733 . + . gene_id "ST02464"; transcript_id "YOL152W"; -chrXV Steinmetz_2013 transcript 43677 44791 . + . gene_id "ST02465"; transcript_id "YOL151W"; -chrXV Steinmetz_2013 transcript 48851 49508 . + . gene_id "ST02466"; transcript_id "YOL146W"; -chrXV Steinmetz_2013 transcript 53050 54613 . + . gene_id "ST02467"; transcript_id "YOL144W"; -chrXV Steinmetz_2013 transcript 55551 56350 . + . gene_id "ST02468"; transcript_id "YOL142W"; -chrXV Steinmetz_2013 transcript 58706 60117 . + . gene_id "ST02469"; transcript_id "YOL140W"; -chrXV Steinmetz_2013 transcript 65565 67363 . + . gene_id "ST02470"; transcript_id "YOL137W"; -chrXV Steinmetz_2013 transcript 70291 71048 . + . gene_id "ST02471"; transcript_id "YOL133W"; -chrXV Steinmetz_2013 transcript 74114 77351 . + . gene_id "ST02472"; transcript_id "YOL130W"; -chrXV Steinmetz_2013 transcript 77540 78257 . + . gene_id "ST02473"; transcript_id "YOL129W"; -chrXV Steinmetz_2013 transcript 80323 81269 . + . gene_id "ST02474"; transcript_id "YOL127W"; -chrXV Steinmetz_2013 transcript 83773 85290 . + . gene_id "ST02475"; transcript_id "YOL125W"; -chrXV Steinmetz_2013 transcript 87464 89587 . + . gene_id "ST02476"; transcript_id "YOL123W"; -chrXV Steinmetz_2013 transcript 96646 97060 . + . gene_id "ST02477"; transcript_id "SUT355"; -chrXV Steinmetz_2013 transcript 97514 99593 . + . gene_id "ST02478"; transcript_id "YOL117W"; -chrXV Steinmetz_2013 transcript 99678 101254 . + . gene_id "ST02479"; transcript_id "YOL116W"; -chrXV Steinmetz_2013 transcript 101409 103342 . + . gene_id "ST02480"; transcript_id "YOL115W"; -chrXV Steinmetz_2013 transcript 104147 106386 . + . gene_id "ST02481"; transcript_id "YOL113W"; -chrXV Steinmetz_2013 transcript 106534 108267 . + . gene_id "ST02482"; transcript_id "YOL112W"; -chrXV Steinmetz_2013 transcript 109164 110040 . + . gene_id "ST02483"; transcript_id "YOL110W"; -chrXV Steinmetz_2013 transcript 110241 110792 . + . gene_id "ST02484"; transcript_id "YOL109W"; -chrXV Steinmetz_2013 transcript 112050 113208 . + . gene_id "ST02485"; transcript_id "YOL107W"; -chrXV Steinmetz_2013 transcript 123837 125992 . + . gene_id "ST02486"; transcript_id "YOL103W"; -chrXV Steinmetz_2013 transcript 128292 128511 . + . gene_id "ST02487"; transcript_id "CUT356"; -chrXV Steinmetz_2013 transcript 135837 136500 . + . gene_id "ST02488"; transcript_id "YOL097W-A"; -chrXV Steinmetz_2013 transcript 142789 143802 . + . gene_id "ST02489"; transcript_id "YOL093W"; -chrXV Steinmetz_2013 transcript 143738 144166 . + . gene_id "ST02490"; transcript_id "CUT359"; -chrXV Steinmetz_2013 transcript 144163 145172 . + . gene_id "ST02491"; transcript_id "YOL092W"; -chrXV Steinmetz_2013 transcript 147344 150358 . + . gene_id "ST02492"; transcript_id "YOL090W"; -chrXV Steinmetz_2013 transcript 159125 159539 . + . gene_id "ST02493"; transcript_id "YOL086W-A"; -chrXV Steinmetz_2013 transcript 161139 162306 . + . gene_id "ST02494"; transcript_id "YOL085W-A"; -chrXV Steinmetz_2013 transcript 165620 167039 . + . gene_id "ST02495"; transcript_id "YOL083W"; -chrXV Steinmetz_2013 transcript 168457 170071 . + . gene_id "ST02496"; transcript_id "YOL082W"; -chrXV Steinmetz_2013 transcript 181660 185310 . + . gene_id "ST02497"; transcript_id "YOL078W"; -chrXV Steinmetz_2013 transcript 185404 185774 . + . gene_id "ST02498"; transcript_id "YOL077W-A"; -chrXV Steinmetz_2013 transcript 187002 189522 . + . gene_id "ST02499"; transcript_id "YOL076W"; -chrXV Steinmetz_2013 transcript 194580 196400 . + . gene_id "ST02500"; transcript_id "YOL072W"; -chrXV Steinmetz_2013 transcript 196503 197119 . + . gene_id "ST02501"; transcript_id "YOL071W"; -chrXV Steinmetz_2013 transcript 198905 201074 . + . gene_id "ST02502"; transcript_id "YOL069W"; -chrXV Steinmetz_2013 transcript 212187 213870 . + . gene_id "ST02503"; transcript_id "YOL061W"; -chrXV Steinmetz_2013 transcript 217122 218695 . + . gene_id "ST02504"; transcript_id "YOL059W"; -chrXV Steinmetz_2013 transcript 219139 220607 . + . gene_id "ST02505"; transcript_id "YOL058W"; -chrXV Steinmetz_2013 transcript 220740 223049 . + . gene_id "ST02506"; transcript_id "YOL057W"; -chrXV Steinmetz_2013 transcript 223205 224349 . + . gene_id "ST02507"; transcript_id "YOL056W"; -chrXV Steinmetz_2013 transcript 227691 228023 . + . gene_id "ST02508"; transcript_id "XUT_15F-104"; -chrXV Steinmetz_2013 transcript 228566 229948 . + . gene_id "ST02509"; transcript_id "YOL054W"; -chrXV Steinmetz_2013 transcript 238577 240205 . + . gene_id "ST02510"; transcript_id "YOL049W"; -chrXV Steinmetz_2013 transcript 241567 242859 . + . gene_id "ST02511"; transcript_id "XUT_15F-112"; -chrXV Steinmetz_2013 transcript 247086 248365 . + . gene_id "ST02512"; transcript_id "YOL044W"; -chrXV Steinmetz_2013 transcript 249766 251184 . + . gene_id "ST02513"; transcript_id "YOL042W"; -chrXV Steinmetz_2013 transcript 254269 254811 . + . gene_id "ST02514"; transcript_id "YOL039W"; -chrXV Steinmetz_2013 transcript 255303 256160 . + . gene_id "ST02515"; transcript_id "YOL038W"; -chrXV Steinmetz_2013 transcript 256352 259170 . + . gene_id "ST02516"; transcript_id "YOL036W"; -chrXV Steinmetz_2013 transcript 259896 263282 . + . gene_id "ST02517"; transcript_id "YOL034W"; -chrXV Steinmetz_2013 transcript 263417 265172 . + . gene_id "ST02518"; transcript_id "YOL033W"; -chrXV Steinmetz_2013 transcript 265333 266217 . + . gene_id "ST02519"; transcript_id "YOL032W"; -chrXV Steinmetz_2013 transcript 267828 268170 . + . gene_id "ST02520"; transcript_id "CUT366"; -chrXV Steinmetz_2013 transcript 268139 269790 . + . gene_id "ST02521"; transcript_id "YOL030W"; -chrXV Steinmetz_2013 transcript 274901 276979 . + . gene_id "ST02522"; transcript_id "YOL025W"; -chrXV Steinmetz_2013 transcript 278009 280257 . + . gene_id "ST02523"; transcript_id "YOL023W"; -chrXV Steinmetz_2013 transcript 281708 282105 . + . gene_id "ST02524"; transcript_id "XUT_15F-129"; -chrXV Steinmetz_2013 transcript 286106 288064 . + . gene_id "ST02525"; transcript_id "YOL020W"; -chrXV Steinmetz_2013 transcript 288756 290774 . + . gene_id "ST02526"; transcript_id "YOL019W"; -chrXV Steinmetz_2013 transcript 292494 294793 . + . gene_id "ST02527"; transcript_id "YOL017W"; -chrXV Steinmetz_2013 transcript 296411 298975 . + . gene_id "ST02528"; transcript_id "YOL015W"; -chrXV Steinmetz_2013 transcript 299505 300306 . + . gene_id "ST02529"; transcript_id "YOL014W"; -chrXV Steinmetz_2013 transcript 304593 307687 . + . gene_id "ST02530"; transcript_id "YOL011W"; -chrXV Steinmetz_2013 transcript 307883 309143 . + . gene_id "ST02531"; transcript_id "YOL010W"; -chrXV Steinmetz_2013 transcript 310296 311088 . + . gene_id "ST02532"; transcript_id "YOL008W"; -chrXV Steinmetz_2013 transcript 326801 329109 . + . gene_id "ST02533"; transcript_id "YOR001W"; -chrXV Steinmetz_2013 transcript 329377 331118 . + . gene_id "ST02534"; transcript_id "YOR002W"; -chrXV Steinmetz_2013 transcript 331396 333073 . + . gene_id "ST02535"; transcript_id "YOR003W"; -chrXV Steinmetz_2013 transcript 333548 334497 . + . gene_id "ST02536"; transcript_id "YOR004W"; -chrXV Steinmetz_2013 transcript 335802 337195 . + . gene_id "ST02537"; transcript_id "SUT359"; -chrXV Steinmetz_2013 transcript 348323 349066 . + . gene_id "ST02538"; transcript_id "XUT_15F-163"; -chrXV Steinmetz_2013 transcript 348706 349046 . + . gene_id "ST02539"; transcript_id "SUT361"; -chrXV Steinmetz_2013 transcript 359957 360400 . + . gene_id "ST02540"; transcript_id "YOR015W"; -chrXV Steinmetz_2013 transcript 361369 364018 . + . gene_id "ST02541"; transcript_id "YOR017W"; -chrXV Steinmetz_2013 transcript 364311 367033 . + . gene_id "ST02542"; transcript_id "YOR018W"; -chrXV Steinmetz_2013 transcript 371659 372128 . + . gene_id "ST02543"; transcript_id "YOR020W-A"; -chrXV Steinmetz_2013 transcript 378200 379712 . + . gene_id "ST02544"; transcript_id "YOR025W"; -chrXV Steinmetz_2013 transcript 379756 380994 . + . gene_id "ST02545"; transcript_id "YOR026W"; -chrXV Steinmetz_2013 transcript 381040 382939 . + . gene_id "ST02546"; transcript_id "YOR027W"; -chrXV Steinmetz_2013 transcript 385349 386367 . + . gene_id "ST02547"; transcript_id "SUT362"; -chrXV Steinmetz_2013 transcript 386729 388801 . + . gene_id "ST02548"; transcript_id "YOR030W"; -chrXV Steinmetz_2013 transcript 389189 389532 . + . gene_id "ST02549"; transcript_id "YOR031W"; -chrXV Steinmetz_2013 transcript 390632 392524 . + . gene_id "ST02550"; transcript_id "YOR032W-A"; -chrXV Steinmetz_2013 transcript 400331 401283 . + . gene_id "ST02551"; transcript_id "YOR036W"; -chrXV Steinmetz_2013 transcript 401480 402757 . + . gene_id "ST02552"; transcript_id "YOR037W"; -chrXV Steinmetz_2013 transcript 405606 406797 . + . gene_id "ST02553"; transcript_id "YOR039W"; -chrXV Steinmetz_2013 transcript 407064 408265 . + . gene_id "ST02554"; transcript_id "YOR040W"; -chrXV Steinmetz_2013 transcript 408368 409710 . + . gene_id "ST02555"; transcript_id "YOR042W"; -chrXV Steinmetz_2013 transcript 410478 412486 . + . gene_id "ST02556"; transcript_id "YOR043W"; -chrXV Steinmetz_2013 transcript 412756 413700 . + . gene_id "ST02557"; transcript_id "YOR044W"; -chrXV Steinmetz_2013 transcript 413795 414193 . + . gene_id "ST02558"; transcript_id "YOR045W"; -chrXV Steinmetz_2013 transcript 418035 418587 . + . gene_id "ST02559"; transcript_id "XUT_15F-197"; -chrXV Steinmetz_2013 transcript 418214 418605 . + . gene_id "ST02560"; transcript_id "SUT365"; -chrXV Steinmetz_2013 transcript 422400 424802 . + . gene_id "ST02561"; transcript_id "SUT366"; -chrXV Steinmetz_2013 transcript 432119 433454 . + . gene_id "ST02562"; transcript_id "YOR057W"; -chrXV Steinmetz_2013 transcript 437336 438393 . + . gene_id "ST02563"; transcript_id "XUT_15F-206"; -chrXV Steinmetz_2013 transcript 441410 442775 . + . gene_id "ST02564"; transcript_id "YOR061W"; -chrXV Steinmetz_2013 transcript 444664 445967 . + . gene_id "ST02565"; transcript_id "YOR063W"; -chrXV Steinmetz_2013 transcript 444108 444627 . + . gene_id "ST02566"; transcript_id "SUT367"; -chrXV Steinmetz_2013 transcript 446041 447135 . + . gene_id "ST02567"; transcript_id "CUT377"; -chrXV Steinmetz_2013 transcript 447222 448896 . + . gene_id "ST02568"; transcript_id "YOR065W"; -chrXV Steinmetz_2013 transcript 449429 451538 . + . gene_id "ST02569"; transcript_id "YOR066W"; -chrXV Steinmetz_2013 transcript 453706 455910 . + . gene_id "ST02570"; transcript_id "YOR069W"; -chrXV Steinmetz_2013 transcript 458185 458583 . + . gene_id "ST02571"; transcript_id "CUT378"; -chrXV Steinmetz_2013 transcript 464700 466659 . + . gene_id "ST02572"; transcript_id "YOR073W"; -chrXV Steinmetz_2013 transcript 468195 469305 . + . gene_id "ST02573"; transcript_id "YOR075W"; -chrXV Steinmetz_2013 transcript 472704 473408 . + . gene_id "ST02574"; transcript_id "YOR078W"; -chrXV Steinmetz_2013 transcript 474573 476958 . + . gene_id "ST02575"; transcript_id "YOR080W"; -chrXV Steinmetz_2013 transcript 480448 481800 . + . gene_id "ST02576"; transcript_id "YOR084W"; -chrXV Steinmetz_2013 transcript 481973 483197 . + . gene_id "ST02577"; transcript_id "YOR085W"; -chrXV Steinmetz_2013 transcript 487635 489851 . + . gene_id "ST02578"; transcript_id "YOR087W"; -chrXV Steinmetz_2013 transcript 491109 493095 . + . gene_id "ST02579"; transcript_id "XUT_15F-238"; -chrXV Steinmetz_2013 transcript 493371 494534 . + . gene_id "ST02580"; transcript_id "YOR091W"; -chrXV Steinmetz_2013 transcript 495046 497152 . + . gene_id "ST02581"; transcript_id "YOR092W"; -chrXV Steinmetz_2013 transcript 502687 503513 . + . gene_id "ST02582"; transcript_id "YOR094W"; -chrXV Steinmetz_2013 transcript 505766 506857 . + . gene_id "ST02583"; transcript_id "YOR096W"; -chrXV Steinmetz_2013 transcript 507030 507974 . + . gene_id "ST02584"; transcript_id "SUT368"; -chrXV Steinmetz_2013 transcript 507011 507651 . + . gene_id "ST02585"; transcript_id "XUT_15F-249"; -chrXV Steinmetz_2013 transcript 511764 513101 . + . gene_id "ST02586"; transcript_id "YOR099W"; -chrXV Steinmetz_2013 transcript 515170 516390 . + . gene_id "ST02587"; transcript_id "YOR101W"; -chrXV Steinmetz_2013 transcript 519035 520081 . + . gene_id "ST02588"; transcript_id "YOR106W"; -chrXV Steinmetz_2013 transcript 521062 522592 . + . gene_id "ST02589"; transcript_id "YOR107W"; -chrXV Steinmetz_2013 transcript 522997 525028 . + . gene_id "ST02590"; transcript_id "YOR108W"; -chrXV Steinmetz_2013 transcript 525177 528790 . + . gene_id "ST02591"; transcript_id "YOR109W"; -chrXV Steinmetz_2013 transcript 528858 530328 . + . gene_id "ST02592"; transcript_id "YOR110W"; -chrXV Steinmetz_2013 transcript 530389 531451 . + . gene_id "ST02593"; transcript_id "YOR111W"; -chrXV Steinmetz_2013 transcript 531438 533856 . + . gene_id "ST02594"; transcript_id "YOR112W"; -chrXV Steinmetz_2013 transcript 533996 537042 . + . gene_id "ST02595"; transcript_id "YOR113W"; -chrXV Steinmetz_2013 transcript 537342 538654 . + . gene_id "ST02596"; transcript_id "YOR114W"; -chrXV Steinmetz_2013 transcript 544970 546468 . + . gene_id "ST02597"; transcript_id "YOR117W"; -chrXV Steinmetz_2013 transcript 546653 548673 . + . gene_id "ST02598"; transcript_id "YOR118W"; -chrXV Steinmetz_2013 transcript 550487 552197 . + . gene_id "ST02599"; transcript_id "YOR120W"; -chrXV Steinmetz_2013 transcript 559929 564368 . + . gene_id "ST02600"; transcript_id "YOR127W"; -chrXV Steinmetz_2013 transcript 571067 571788 . + . gene_id "ST02601"; transcript_id "SUT370"; -chrXV Steinmetz_2013 transcript 571133 571886 . + . gene_id "ST02602"; transcript_id "XUT_15F-269"; -chrXV Steinmetz_2013 transcript 573095 574880 . + . gene_id "ST02603"; transcript_id "YOR132W"; -chrXV Steinmetz_2013 transcript 575052 577811 . + . gene_id "ST02604"; transcript_id "YOR133W"; -chrXV Steinmetz_2013 transcript 580142 581513 . + . gene_id "ST02605"; transcript_id "YOR136W"; -chrXV Steinmetz_2013 transcript 586649 589722 . + . gene_id "ST02606"; transcript_id "YOR140W"; -chrXV Steinmetz_2013 transcript 589232 589746 . + . gene_id "ST02607"; transcript_id "XUT_15F-281"; -chrXV Steinmetz_2013 transcript 592864 594237 . + . gene_id "ST02608"; transcript_id "YOR142W"; -chrXV Steinmetz_2013 transcript 605793 606441 . + . gene_id "ST02609"; transcript_id "YOR146W"; -chrXV Steinmetz_2013 transcript 606570 608641 . + . gene_id "ST02610"; transcript_id "YOR147W"; -chrXV Steinmetz_2013 transcript 611972 612589 . + . gene_id "ST02611"; transcript_id "YOR150W"; -chrXV Steinmetz_2013 transcript 624679 626651 . + . gene_id "ST02612"; transcript_id "YOR154W"; -chrXV Steinmetz_2013 transcript 632137 633160 . + . gene_id "ST02613"; transcript_id "YOR158W"; -chrXV Steinmetz_2013 transcript 633771 636841 . + . gene_id "ST02614"; transcript_id "YOR160W"; -chrXV Steinmetz_2013 transcript 639164 640638 . + . gene_id "ST02615"; transcript_id "XUT_15F-296"; -chrXV Steinmetz_2013 transcript 639511 640552 . + . gene_id "ST02616"; transcript_id "SUT373"; -chrXV Steinmetz_2013 transcript 642704 643380 . + . gene_id "ST02617"; transcript_id "YOR163W"; -chrXV Steinmetz_2013 transcript 644533 647063 . + . gene_id "ST02618"; transcript_id "YOR165W"; -chrXV Steinmetz_2013 transcript 649275 651833 . + . gene_id "ST02619"; transcript_id "YOR168W"; -chrXV Steinmetz_2013 transcript 654166 656742 . + . gene_id "ST02620"; transcript_id "YOR172W"; -chrXV Steinmetz_2013 transcript 657216 658468 . + . gene_id "ST02621"; transcript_id "YOR173W"; -chrXV Steinmetz_2013 transcript 658645 659726 . + . gene_id "ST02622"; transcript_id "YOR174W"; -chrXV Steinmetz_2013 transcript 661883 662125 . + . gene_id "ST02623"; transcript_id "CUT387"; -chrXV Steinmetz_2013 transcript 662334 663714 . + . gene_id "ST02624"; transcript_id "YOR176W"; -chrXV Steinmetz_2013 transcript 667871 670334 . + . gene_id "ST02625"; transcript_id "SUT374"; -chrXV Steinmetz_2013 transcript 672616 673154 . + . gene_id "ST02626"; transcript_id "SUT375"; -chrXV Steinmetz_2013 transcript 675869 677923 . + . gene_id "ST02627"; transcript_id "YOR181W"; -chrXV Steinmetz_2013 transcript 679264 680660 . + . gene_id "ST02628"; transcript_id "YOR184W"; -chrXV Steinmetz_2013 transcript 681491 683654 . + . gene_id "ST02629"; transcript_id "YOR186W"; -chrXV Steinmetz_2013 transcript 682412 683128 . + . gene_id "ST02630"; transcript_id "XUT_15F-318"; -chrXV Steinmetz_2013 transcript 684013 685465 . + . gene_id "ST02631"; transcript_id "YOR187W"; -chrXV Steinmetz_2013 transcript 685671 689310 . + . gene_id "ST02632"; transcript_id "YOR188W"; -chrXV Steinmetz_2013 transcript 689603 690197 . + . gene_id "ST02633"; transcript_id "YOR189W"; -chrXV Steinmetz_2013 transcript 690332 692293 . + . gene_id "ST02634"; transcript_id "YOR190W"; -chrXV Steinmetz_2013 transcript 701818 703586 . + . gene_id "ST02635"; transcript_id "SUT377"; -chrXV Steinmetz_2013 transcript 701818 703885 . + . gene_id "ST02636"; transcript_id "XUT_15F-331"; -chrXV Steinmetz_2013 transcript 710390 711690 . + . gene_id "ST02637"; transcript_id "YOR193W"; -chrXV Steinmetz_2013 transcript 712796 715554 . + . gene_id "ST02638"; transcript_id "YOR195W"; -chrXV Steinmetz_2013 transcript 717070 718462 . + . gene_id "ST02639"; transcript_id "YOR197W"; -chrXV Steinmetz_2013 transcript 727483 729731 . + . gene_id "ST02640"; transcript_id "YOR206W"; -chrXV Steinmetz_2013 transcript 733740 736293 . + . gene_id "ST02641"; transcript_id "YOR208W"; -chrXV Steinmetz_2013 transcript 738258 738828 . + . gene_id "ST02642"; transcript_id "YOR210W"; -chrXV Steinmetz_2013 transcript 742654 744303 . + . gene_id "ST02643"; transcript_id "YOR212W"; -chrXV Steinmetz_2013 transcript 749214 752114 . + . gene_id "ST02644"; transcript_id "YOR217W"; -chrXV Steinmetz_2013 transcript 755304 756297 . + . gene_id "ST02645"; transcript_id "YOR220W"; -chrXV Steinmetz_2013 transcript 758302 759313 . + . gene_id "ST02646"; transcript_id "YOR222W"; -chrXV Steinmetz_2013 transcript 759740 760861 . + . gene_id "ST02647"; transcript_id "YOR223W"; -chrXV Steinmetz_2013 transcript 762593 766726 . + . gene_id "ST02648"; transcript_id "YOR227W"; -chrXV Steinmetz_2013 transcript 768316 770017 . + . gene_id "ST02649"; transcript_id "YOR229W"; -chrXV Steinmetz_2013 transcript 770749 772301 . + . gene_id "ST02650"; transcript_id "YOR230W"; -chrXV Steinmetz_2013 transcript 772452 774314 . + . gene_id "ST02651"; transcript_id "YOR231W"; -chrXV Steinmetz_2013 transcript 774456 775394 . + . gene_id "ST02652"; transcript_id "YOR232W"; -chrXV Steinmetz_2013 transcript 775668 778315 . + . gene_id "ST02653"; transcript_id "YOR233W"; -chrXV Steinmetz_2013 transcript 780892 781607 . + . gene_id "ST02654"; transcript_id "YOR236W"; -chrXV Steinmetz_2013 transcript 783670 784660 . + . gene_id "ST02655"; transcript_id "YOR238W"; -chrXV Steinmetz_2013 transcript 784799 786951 . + . gene_id "ST02656"; transcript_id "YOR239W"; -chrXV Steinmetz_2013 transcript 792473 793965 . + . gene_id "ST02657"; transcript_id "YOR244W"; -chrXV Steinmetz_2013 transcript 803635 804276 . + . gene_id "ST02658"; transcript_id "YOR252W"; -chrXV Steinmetz_2013 transcript 804348 805023 . + . gene_id "ST02659"; transcript_id "YOR253W"; -chrXV Steinmetz_2013 transcript 806991 808283 . + . gene_id "ST02660"; transcript_id "YOR255W"; -chrXV Steinmetz_2013 transcript 810974 811548 . + . gene_id "ST02661"; transcript_id "YOR257W"; -chrXV Steinmetz_2013 transcript 811663 812413 . + . gene_id "ST02662"; transcript_id "YOR258W"; -chrXV Steinmetz_2013 transcript 813940 815841 . + . gene_id "ST02663"; transcript_id "YOR260W"; -chrXV Steinmetz_2013 transcript 817229 818436 . + . gene_id "ST02664"; transcript_id "YOR262W"; -chrXV Steinmetz_2013 transcript 818813 820341 . + . gene_id "ST02665"; transcript_id "YOR264W"; -chrXV Steinmetz_2013 transcript 820420 820805 . + . gene_id "ST02666"; transcript_id "YOR265W"; -chrXV Steinmetz_2013 transcript 820919 822369 . + . gene_id "ST02667"; transcript_id "YOR266W"; -chrXV Steinmetz_2013 transcript 825276 826113 . + . gene_id "ST02668"; transcript_id "CUT389"; -chrXV Steinmetz_2013 transcript 826309 828027 . + . gene_id "ST02669"; transcript_id "YOR269W"; -chrXV Steinmetz_2013 transcript 832766 834274 . + . gene_id "ST02670"; transcript_id "YOR272W"; -chrXV Steinmetz_2013 transcript 837674 839236 . + . gene_id "ST02671"; transcript_id "YOR274W"; -chrXV Steinmetz_2013 transcript 841308 841910 . + . gene_id "ST02672"; transcript_id "YOR276W"; -chrXV Steinmetz_2013 transcript 842796 843725 . + . gene_id "ST02673"; transcript_id "YOR278W"; -chrXV Steinmetz_2013 transcript 844884 845152 . + . gene_id "ST02674"; transcript_id "CUT390"; -chrXV Steinmetz_2013 transcript 844966 845522 . + . gene_id "ST02675"; transcript_id "XUT_15F-388"; -chrXV Steinmetz_2013 transcript 847349 848288 . + . gene_id "ST02676"; transcript_id "YOR283W"; -chrXV Steinmetz_2013 transcript 848431 849490 . + . gene_id "ST02677"; transcript_id "YOR284W"; -chrXV Steinmetz_2013 transcript 849629 850122 . + . gene_id "ST02678"; transcript_id "YOR285W"; -chrXV Steinmetz_2013 transcript 850276 850813 . + . gene_id "ST02679"; transcript_id "YOR286W"; -chrXV Steinmetz_2013 transcript 853341 854167 . + . gene_id "ST02680"; transcript_id "YOR289W"; -chrXV Steinmetz_2013 transcript 867058 867993 . + . gene_id "ST02681"; transcript_id "YOR293W"; -chrXV Steinmetz_2013 transcript 868294 869100 . + . gene_id "ST02682"; transcript_id "YOR294W"; -chrXV Steinmetz_2013 transcript 869131 870120 . + . gene_id "ST02683"; transcript_id "YOR295W"; -chrXV Steinmetz_2013 transcript 880947 882582 . + . gene_id "ST02684"; transcript_id "YOR301W"; -chrXV Steinmetz_2013 transcript 882893 884209 . + . gene_id "ST02685"; transcript_id "YOR303W"; -chrXV Steinmetz_2013 transcript 884343 887959 . + . gene_id "ST02686"; transcript_id "YOR304W"; -chrXV Steinmetz_2013 transcript 888959 889828 . + . gene_id "ST02687"; transcript_id "YOR305W"; -chrXV Steinmetz_2013 transcript 889974 891672 . + . gene_id "ST02688"; transcript_id "SUT379"; -chrXV Steinmetz_2013 transcript 892089 892713 . + . gene_id "ST02689"; transcript_id "SUT380"; -chrXV Steinmetz_2013 transcript 898627 898938 . + . gene_id "ST02690"; transcript_id "SUT381"; -chrXV Steinmetz_2013 transcript 904683 906211 . + . gene_id "ST02691"; transcript_id "YOR315W"; -chrXV Steinmetz_2013 transcript 909314 911694 . + . gene_id "ST02692"; transcript_id "YOR317W"; -chrXV Steinmetz_2013 transcript 912798 913595 . + . gene_id "ST02693"; transcript_id "YOR319W"; -chrXV Steinmetz_2013 transcript 915981 918327 . + . gene_id "ST02694"; transcript_id "YOR321W"; -chrXV Steinmetz_2013 transcript 923928 925072 . + . gene_id "ST02695"; transcript_id "YOR325W"; -chrXV Steinmetz_2013 transcript 925520 930498 . + . gene_id "ST02696"; transcript_id "YOR326W"; -chrXV Steinmetz_2013 transcript 936541 938390 . + . gene_id "ST02697"; transcript_id "SUT383"; -chrXV Steinmetz_2013 transcript 943625 944427 . + . gene_id "ST02698"; transcript_id "YOR332W"; -chrXV Steinmetz_2013 transcript 944543 946105 . + . gene_id "ST02699"; transcript_id "YOR334W"; -chrXV Steinmetz_2013 transcript 949748 954047 . + . gene_id "ST02700"; transcript_id "YOR336W"; -chrXV Steinmetz_2013 transcript 954285 956838 . + . gene_id "ST02701"; transcript_id "YOR337W"; -chrXV Steinmetz_2013 transcript 956835 958059 . + . gene_id "ST02702"; transcript_id "YOR338W"; -chrXV Steinmetz_2013 transcript 958359 958913 . + . gene_id "ST02703"; transcript_id "SUT384"; -chrXV Steinmetz_2013 transcript 967242 967836 . + . gene_id "ST02704"; transcript_id "XUT_15F-431"; -chrXV Steinmetz_2013 transcript 977864 979933 . + . gene_id "ST02705"; transcript_id "SUT386"; -chrXV Steinmetz_2013 transcript 981665 984866 . + . gene_id "ST02706"; transcript_id "YOR346W"; -chrXV Steinmetz_2013 transcript 989762 992876 . + . gene_id "ST02707"; transcript_id "YOR349W"; -chrXV Steinmetz_2013 transcript 995063 996921 . + . gene_id "ST02708"; transcript_id "XUT_15F-448"; -chrXV Steinmetz_2013 transcript 997138 998314 . + . gene_id "ST02709"; transcript_id "YOR352W"; -chrXV Steinmetz_2013 transcript 1001083 1001567 . + . gene_id "ST02710"; transcript_id "CUT396"; -chrXV Steinmetz_2013 transcript 1003951 1004562 . + . gene_id "ST02711"; transcript_id "SUT388"; -chrXV Steinmetz_2013 transcript 1004632 1006893 . + . gene_id "ST02712"; transcript_id "YOR355W"; -chrXV Steinmetz_2013 transcript 1007194 1009230 . + . gene_id "ST02713"; transcript_id "YOR356W"; -chrXV Steinmetz_2013 transcript 1010116 1011179 . + . gene_id "ST02714"; transcript_id "YOR358W"; -chrXV Steinmetz_2013 transcript 1011119 1012883 . + . gene_id "ST02715"; transcript_id "YOR359W"; -chrXV Steinmetz_2013 transcript 1019000 1020008 . + . gene_id "ST02716"; transcript_id "XUT_15F-453"; -chrXV Steinmetz_2013 transcript 1025243 1025642 . + . gene_id "ST02717"; transcript_id "YOR366W"; -chrXV Steinmetz_2013 transcript 1025982 1026707 . + . gene_id "ST02718"; transcript_id "YOR367W"; -chrXV Steinmetz_2013 transcript 1026787 1028158 . + . gene_id "ST02719"; transcript_id "YOR368W"; -chrXV Steinmetz_2013 transcript 1039792 1041541 . + . gene_id "ST02720"; transcript_id "YOR374W"; -chrXV Steinmetz_2013 transcript 1044706 1046119 . + . gene_id "ST02721"; transcript_id "YOR376W-A"; -chrXV Steinmetz_2013 transcript 1046175 1048024 . + . gene_id "ST02722"; transcript_id "YOR377W"; -chrXV Steinmetz_2013 transcript 1049389 1051127 . + . gene_id "ST02723"; transcript_id "YOR378W"; -chrXV Steinmetz_2013 transcript 1051082 1052984 . + . gene_id "ST02724"; transcript_id "YOR380W"; -chrXV Steinmetz_2013 transcript 1055234 1057794 . + . gene_id "ST02725"; transcript_id "YOR381W"; -chrXV Steinmetz_2013 transcript 1057998 1058476 . + . gene_id "ST02726"; transcript_id "XUT_15F-473"; -chrXV Steinmetz_2013 transcript 1058030 1059390 . + . gene_id "ST02727"; transcript_id "YOR381W-A"; -chrXV Steinmetz_2013 transcript 1059514 1060086 . + . gene_id "ST02728"; transcript_id "YOR382W"; -chrXV Steinmetz_2013 transcript 1061526 1064681 . + . gene_id "ST02729"; transcript_id "YOR384W"; -chrXV Steinmetz_2013 transcript 1065035 1066198 . + . gene_id "ST02730"; transcript_id "YOR385W"; -chrXV Steinmetz_2013 transcript 1066825 1068761 . + . gene_id "ST02731"; transcript_id "YOR386W"; -chrXV Steinmetz_2013 transcript 1074174 1076466 . + . gene_id "ST02732"; transcript_id "YOR389W"; -chrXV Steinmetz_2013 transcript 1076718 1078215 . + . gene_id "ST02733"; transcript_id "YOR390W"; -chrXVI Steinmetz_2013 transcript 23586 24712 . - . gene_id "ST02734"; transcript_id "XUT_16R-9"; -chrXVI Steinmetz_2013 transcript 23772 24703 . - . gene_id "ST02735"; transcript_id "SUT803"; -chrXVI Steinmetz_2013 transcript 26536 29020 . - . gene_id "ST02736"; transcript_id "YPL272C"; -chrXVI Steinmetz_2013 transcript 34627 35011 . - . gene_id "ST02737"; transcript_id "CUT877"; -chrXVI Steinmetz_2013 transcript 36964 37781 . - . gene_id "ST02738"; transcript_id "XUT_16R-15"; -chrXVI Steinmetz_2013 transcript 40060 40799 . - . gene_id "ST02739"; transcript_id "SUT804"; -chrXVI Steinmetz_2013 transcript 43020 44362 . - . gene_id "ST02740"; transcript_id "YPL264C"; -chrXVI Steinmetz_2013 transcript 44509 46528 . - . gene_id "ST02741"; transcript_id "YPL263C"; -chrXVI Steinmetz_2013 transcript 46757 47193 . - . gene_id "ST02742"; transcript_id "XUT_16R-25"; -chrXVI Steinmetz_2013 transcript 48736 49543 . - . gene_id "ST02743"; transcript_id "YPL261C"; -chrXVI Steinmetz_2013 transcript 51038 52712 . - . gene_id "ST02744"; transcript_id "YPL259C"; -chrXVI Steinmetz_2013 transcript 53421 55759 . - . gene_id "ST02745"; transcript_id "YPL258C"; -chrXVI Steinmetz_2013 transcript 64795 66789 . - . gene_id "ST02746"; transcript_id "YPL256C"; -chrXVI Steinmetz_2013 transcript 70968 73053 . - . gene_id "ST02747"; transcript_id "YPL253C"; -chrXVI Steinmetz_2013 transcript 73234 73925 . - . gene_id "ST02748"; transcript_id "YPL252C"; -chrXVI Steinmetz_2013 transcript 74118 74786 . - . gene_id "ST02749"; transcript_id "YPL250C"; -chrXVI Steinmetz_2013 transcript 75552 76277 . - . gene_id "ST02750"; transcript_id "YPL249C-A"; -chrXVI Steinmetz_2013 transcript 76604 79380 . - . gene_id "ST02751"; transcript_id "YPL249C"; -chrXVI Steinmetz_2013 transcript 79528 82393 . - . gene_id "ST02752"; transcript_id "YPL248C"; -chrXVI Steinmetz_2013 transcript 84410 85337 . - . gene_id "ST02753"; transcript_id "YPL246C"; -chrXVI Steinmetz_2013 transcript 86933 88055 . - . gene_id "ST02754"; transcript_id "YPL244C"; -chrXVI Steinmetz_2013 transcript 95292 96266 . - . gene_id "ST02755"; transcript_id "YPL241C"; -chrXVI Steinmetz_2013 transcript 96408 98681 . - . gene_id "ST02756"; transcript_id "YPL240C"; -chrXVI Steinmetz_2013 transcript 101399 102773 . - . gene_id "ST02757"; transcript_id "YPL236C"; -chrXVI Steinmetz_2013 transcript 104805 105495 . - . gene_id "ST02758"; transcript_id "YPL234C"; -chrXVI Steinmetz_2013 transcript 105491 105867 . - . gene_id "ST02759"; transcript_id "CUT879"; -chrXVI Steinmetz_2013 transcript 114302 116489 . - . gene_id "ST02760"; transcript_id "SUT807"; -chrXVI Steinmetz_2013 transcript 114342 115661 . - . gene_id "ST02761"; transcript_id "XUT_16R-54"; -chrXVI Steinmetz_2013 transcript 120071 121300 . - . gene_id "ST02762"; transcript_id "YPL227C"; -chrXVI Steinmetz_2013 transcript 126438 128088 . - . gene_id "ST02763"; transcript_id "YPL224C"; -chrXVI Steinmetz_2013 transcript 128404 129251 . - . gene_id "ST02764"; transcript_id "YPL223C"; -chrXVI Steinmetz_2013 transcript 132430 132773 . - . gene_id "ST02765"; transcript_id "SUT809"; -chrXVI Steinmetz_2013 transcript 134825 135499 . - . gene_id "ST02766"; transcript_id "CUT884"; -chrXVI Steinmetz_2013 transcript 145480 146628 . - . gene_id "ST02767"; transcript_id "SUT810"; -chrXVI Steinmetz_2013 transcript 145480 147171 . - . gene_id "ST02768"; transcript_id "XUT_16R-69"; -chrXVI Steinmetz_2013 transcript 148507 150298 . - . gene_id "ST02769"; transcript_id "YPL214C"; -chrXVI Steinmetz_2013 transcript 151344 153190 . - . gene_id "ST02770"; transcript_id "YPL212C"; -chrXVI Steinmetz_2013 transcript 154205 156231 . - . gene_id "ST02771"; transcript_id "YPL210C"; -chrXVI Steinmetz_2013 transcript 156387 157671 . - . gene_id "ST02772"; transcript_id "YPL209C"; -chrXVI Steinmetz_2013 transcript 162529 163620 . - . gene_id "ST02773"; transcript_id "YPL206C"; -chrXVI Steinmetz_2013 transcript 167705 169419 . - . gene_id "ST02774"; transcript_id "YPL202C"; -chrXVI Steinmetz_2013 transcript 171968 172767 . - . gene_id "ST02775"; transcript_id "YPL199C"; -chrXVI Steinmetz_2013 transcript 182571 183256 . - . gene_id "ST02776"; transcript_id "YPL192C"; -chrXVI Steinmetz_2013 transcript 183177 184728 . - . gene_id "ST02777"; transcript_id "YPL191C"; -chrXVI Steinmetz_2013 transcript 184870 187819 . - . gene_id "ST02778"; transcript_id "YPL190C"; -chrXVI Steinmetz_2013 transcript 188071 188604 . - . gene_id "ST02779"; transcript_id "YPL189C-A"; -chrXVI Steinmetz_2013 transcript 194363 195479 . - . gene_id "ST02780"; transcript_id "YPL186C"; -chrXVI Steinmetz_2013 transcript 195851 198460 . - . gene_id "ST02781"; transcript_id "YPL184C"; -chrXVI Steinmetz_2013 transcript 199407 202574 . - . gene_id "ST02782"; transcript_id "YPL183C"; -chrXVI Steinmetz_2013 transcript 204375 204958 . - . gene_id "ST02783"; transcript_id "CUT890"; -chrXVI Steinmetz_2013 transcript 212925 214044 . - . gene_id "ST02784"; transcript_id "YPL177C"; -chrXVI Steinmetz_2013 transcript 215714 218390 . - . gene_id "ST02785"; transcript_id "YPL176C"; -chrXVI Steinmetz_2013 transcript 220094 222908 . - . gene_id "ST02786"; transcript_id "YPL174C"; -chrXVI Steinmetz_2013 transcript 224214 225869 . - . gene_id "ST02787"; transcript_id "YPL172C"; -chrXVI Steinmetz_2013 transcript 226055 227378 . - . gene_id "ST02788"; transcript_id "YPL171C"; -chrXVI Steinmetz_2013 transcript 228838 230874 . - . gene_id "ST02789"; transcript_id "YPL169C"; -chrXVI Steinmetz_2013 transcript 237640 239105 . - . gene_id "ST02790"; transcript_id "YPL165C"; -chrXVI Steinmetz_2013 transcript 239090 241548 . - . gene_id "ST02791"; transcript_id "YPL164C"; -chrXVI Steinmetz_2013 transcript 241661 242723 . - . gene_id "ST02792"; transcript_id "YPL163C"; -chrXVI Steinmetz_2013 transcript 243119 244082 . - . gene_id "ST02793"; transcript_id "YPL162C"; -chrXVI Steinmetz_2013 transcript 250570 251761 . - . gene_id "ST02794"; transcript_id "YPL159C"; -chrXVI Steinmetz_2013 transcript 251979 254380 . - . gene_id "ST02795"; transcript_id "YPL158C"; -chrXVI Steinmetz_2013 transcript 255790 256827 . - . gene_id "ST02796"; transcript_id "YPL156C"; -chrXVI Steinmetz_2013 transcript 256797 259377 . - . gene_id "ST02797"; transcript_id "YPL155C"; -chrXVI Steinmetz_2013 transcript 259588 261194 . - . gene_id "ST02798"; transcript_id "YPL154C"; -chrXVI Steinmetz_2013 transcript 261547 264332 . - . gene_id "ST02799"; transcript_id "YPL153C"; -chrXVI Steinmetz_2013 transcript 266081 267561 . - . gene_id "ST02800"; transcript_id "YPL151C"; -chrXVI Steinmetz_2013 transcript 272119 272952 . - . gene_id "ST02801"; transcript_id "YPL148C"; -chrXVI Steinmetz_2013 transcript 276019 277565 . - . gene_id "ST02802"; transcript_id "YPL146C"; -chrXVI Steinmetz_2013 transcript 277925 279952 . - . gene_id "ST02803"; transcript_id "YPL145C"; -chrXVI Steinmetz_2013 transcript 287324 289247 . - . gene_id "ST02804"; transcript_id "YPL140C"; -chrXVI Steinmetz_2013 transcript 289578 291107 . - . gene_id "ST02805"; transcript_id "YPL139C"; -chrXVI Steinmetz_2013 transcript 291207 292482 . - . gene_id "ST02806"; transcript_id "YPL138C"; -chrXVI Steinmetz_2013 transcript 292651 296684 . - . gene_id "ST02807"; transcript_id "YPL137C"; -chrXVI Steinmetz_2013 transcript 296684 298108 . - . gene_id "ST02808"; transcript_id "YPL135C-A"; -chrXVI Steinmetz_2013 transcript 298437 299532 . - . gene_id "ST02809"; transcript_id "YPL134C"; -chrXVI Steinmetz_2013 transcript 299742 301349 . - . gene_id "ST02810"; transcript_id "YPL133C"; -chrXVI Steinmetz_2013 transcript 306255 308281 . - . gene_id "ST02811"; transcript_id "YPL128C"; -chrXVI Steinmetz_2013 transcript 308688 309627 . - . gene_id "ST02812"; transcript_id "YPL127C"; -chrXVI Steinmetz_2013 transcript 317500 319028 . - . gene_id "ST02813"; transcript_id "YPL123C"; -chrXVI Steinmetz_2013 transcript 319127 320793 . - . gene_id "ST02814"; transcript_id "YPL122C"; -chrXVI Steinmetz_2013 transcript 323747 324399 . - . gene_id "ST02815"; transcript_id "YPL119C-A"; -chrXVI Steinmetz_2013 transcript 327809 328847 . - . gene_id "ST02816"; transcript_id "YPL117C"; -chrXVI Steinmetz_2013 transcript 331971 335776 . - . gene_id "ST02817"; transcript_id "YPL115C"; -chrXVI Steinmetz_2013 transcript 335859 337175 . - . gene_id "ST02818"; transcript_id "YPL113C"; -chrXVI Steinmetz_2013 transcript 337370 338686 . - . gene_id "ST02819"; transcript_id "YPL112C"; -chrXVI Steinmetz_2013 transcript 345246 347466 . - . gene_id "ST02820"; transcript_id "YPL109C"; -chrXVI Steinmetz_2013 transcript 347561 348302 . - . gene_id "ST02821"; transcript_id "SUT812"; -chrXVI Steinmetz_2013 transcript 350053 352316 . - . gene_id "ST02822"; transcript_id "YPL106C"; -chrXVI Steinmetz_2013 transcript 352703 355435 . - . gene_id "ST02823"; transcript_id "YPL105C"; -chrXVI Steinmetz_2013 transcript 357862 359425 . - . gene_id "ST02824"; transcript_id "YPL103C"; -chrXVI Steinmetz_2013 transcript 363331 364087 . - . gene_id "ST02825"; transcript_id "YPL099C"; -chrXVI Steinmetz_2013 transcript 364216 364756 . - . gene_id "ST02826"; transcript_id "YPL098C"; -chrXVI Steinmetz_2013 transcript 366395 366777 . - . gene_id "ST02827"; transcript_id "YPL096C-A"; -chrXVI Steinmetz_2013 transcript 368018 369474 . - . gene_id "ST02828"; transcript_id "YPL095C"; -chrXVI Steinmetz_2013 transcript 369776 370681 . - . gene_id "ST02829"; transcript_id "YPL094C"; -chrXVI Steinmetz_2013 transcript 377152 378424 . - . gene_id "ST02830"; transcript_id "YPL090C"; -chrXVI Steinmetz_2013 transcript 378992 381403 . - . gene_id "ST02831"; transcript_id "YPL089C"; -chrXVI Steinmetz_2013 transcript 384654 386475 . - . gene_id "ST02832"; transcript_id "YPL086C"; -chrXVI Steinmetz_2013 transcript 396571 398183 . - . gene_id "ST02833"; transcript_id "YPL083C"; -chrXVI Steinmetz_2013 transcript 407752 408801 . - . gene_id "ST02834"; transcript_id "YPL078C"; -chrXVI Steinmetz_2013 transcript 409016 410118 . - . gene_id "ST02835"; transcript_id "YPL077C"; -chrXVI Steinmetz_2013 transcript 411279 411632 . - . gene_id "ST02836"; transcript_id "XUT_16R-174"; -chrXVI Steinmetz_2013 transcript 419960 420564 . - . gene_id "ST02837"; transcript_id "YPL071C"; -chrXVI Steinmetz_2013 transcript 422740 423932 . - . gene_id "ST02838"; transcript_id "YPL069C"; -chrXVI Steinmetz_2013 transcript 424150 425114 . - . gene_id "ST02839"; transcript_id "YPL068C"; -chrXVI Steinmetz_2013 transcript 425163 425904 . - . gene_id "ST02840"; transcript_id "YPL067C"; -chrXVI Steinmetz_2013 transcript 428584 429625 . - . gene_id "ST02841"; transcript_id "YPL064C"; -chrXVI Steinmetz_2013 transcript 431355 431585 . - . gene_id "ST02842"; transcript_id "SUT814"; -chrXVI Steinmetz_2013 transcript 444237 445067 . - . gene_id "ST02843"; transcript_id "CUT899"; -chrXVI Steinmetz_2013 transcript 451463 453241 . - . gene_id "ST02844"; transcript_id "YPL057C"; -chrXVI Steinmetz_2013 transcript 453208 453915 . - . gene_id "ST02845"; transcript_id "YPL056C"; -chrXVI Steinmetz_2013 transcript 453920 455000 . - . gene_id "ST02846"; transcript_id "YPL055C"; -chrXVI Steinmetz_2013 transcript 455694 456577 . - . gene_id "ST02847"; transcript_id "SUT816"; -chrXVI Steinmetz_2013 transcript 457022 458530 . - . gene_id "ST02848"; transcript_id "YPL053C"; -chrXVI Steinmetz_2013 transcript 459177 459774 . - . gene_id "ST02849"; transcript_id "SUT817"; -chrXVI Steinmetz_2013 transcript 460620 462161 . - . gene_id "ST02850"; transcript_id "YPL050C"; -chrXVI Steinmetz_2013 transcript 462293 463888 . - . gene_id "ST02851"; transcript_id "YPL049C"; -chrXVI Steinmetz_2013 transcript 466415 466965 . - . gene_id "ST02852"; transcript_id "YPL046C"; -chrXVI Steinmetz_2013 transcript 472932 474951 . - . gene_id "ST02853"; transcript_id "YPL042C"; -chrXVI Steinmetz_2013 transcript 474915 475761 . - . gene_id "ST02854"; transcript_id "YPL041C"; -chrXVI Steinmetz_2013 transcript 475925 479027 . - . gene_id "ST02855"; transcript_id "YPL040C"; -chrXVI Steinmetz_2013 transcript 481376 481932 . - . gene_id "ST02856"; transcript_id "YPL037C"; -chrXVI Steinmetz_2013 transcript 487208 488207 . - . gene_id "ST02857"; transcript_id "YPL033C"; -chrXVI Steinmetz_2013 transcript 488528 491562 . - . gene_id "ST02858"; transcript_id "YPL032C"; -chrXVI Steinmetz_2013 transcript 491936 493073 . - . gene_id "ST02859"; transcript_id "YPL031C"; -chrXVI Steinmetz_2013 transcript 497326 497687 . - . gene_id "ST02860"; transcript_id "CUT903"; -chrXVI Steinmetz_2013 transcript 499300 500195 . - . gene_id "ST02861"; transcript_id "SUT819"; -chrXVI Steinmetz_2013 transcript 500428 502251 . - . gene_id "ST02862"; transcript_id "YPL026C"; -chrXVI Steinmetz_2013 transcript 502260 503270 . - . gene_id "ST02863"; transcript_id "YPL025C"; -chrXVI Steinmetz_2013 transcript 504204 506443 . - . gene_id "ST02864"; transcript_id "YPL023C"; -chrXVI Steinmetz_2013 transcript 512251 514308 . - . gene_id "ST02865"; transcript_id "YPL020C"; -chrXVI Steinmetz_2013 transcript 514429 517153 . - . gene_id "ST02866"; transcript_id "YPL019C"; -chrXVI Steinmetz_2013 transcript 518179 520253 . - . gene_id "ST02867"; transcript_id "YPL017C"; -chrXVI Steinmetz_2013 transcript 525000 525458 . - . gene_id "ST02868"; transcript_id "SUT821"; -chrXVI Steinmetz_2013 transcript 525487 526939 . - . gene_id "ST02869"; transcript_id "YPL015C"; -chrXVI Steinmetz_2013 transcript 527388 528846 . - . gene_id "ST02870"; transcript_id "XUT_16R-225"; -chrXVI Steinmetz_2013 transcript 528976 529377 . - . gene_id "ST02871"; transcript_id "YPL013C"; -chrXVI Steinmetz_2013 transcript 533528 534759 . - . gene_id "ST02872"; transcript_id "YPL011C"; -chrXVI Steinmetz_2013 transcript 535633 538959 . - . gene_id "ST02873"; transcript_id "YPL009C"; -chrXVI Steinmetz_2013 transcript 541984 543886 . - . gene_id "ST02874"; transcript_id "YPL007C"; -chrXVI Steinmetz_2013 transcript 550440 551682 . - . gene_id "ST02875"; transcript_id "YPL004C"; -chrXVI Steinmetz_2013 transcript 553253 554347 . - . gene_id "ST02876"; transcript_id "YPL002C"; -chrXVI Steinmetz_2013 transcript 556308 557299 . - . gene_id "ST02877"; transcript_id "SUT822"; -chrXVI Steinmetz_2013 transcript 561297 563814 . - . gene_id "ST02878"; transcript_id "YPR003C"; -chrXVI Steinmetz_2013 transcript 563951 565055 . - . gene_id "ST02879"; transcript_id "YPR004C"; -chrXVI Steinmetz_2013 transcript 565449 566690 . - . gene_id "ST02880"; transcript_id "YPR005C"; -chrXVI Steinmetz_2013 transcript 567196 569060 . - . gene_id "ST02881"; transcript_id "YPR006C"; -chrXVI Steinmetz_2013 transcript 577439 581238 . - . gene_id "ST02882"; transcript_id "YPR010C"; -chrXVI Steinmetz_2013 transcript 582307 582786 . - . gene_id "ST02883"; transcript_id "YPR010C-A"; -chrXVI Steinmetz_2013 transcript 582855 584145 . - . gene_id "ST02884"; transcript_id "YPR011C"; -chrXVI Steinmetz_2013 transcript 584376 586163 . - . gene_id "ST02885"; transcript_id "YPR013C"; -chrXVI Steinmetz_2013 transcript 587718 588149 . - . gene_id "ST02886"; transcript_id "SUT824"; -chrXVI Steinmetz_2013 transcript 590142 591112 . - . gene_id "ST02887"; transcript_id "YPR015C"; -chrXVI Steinmetz_2013 transcript 592157 593161 . - . gene_id "ST02888"; transcript_id "YPR016C"; -chrXVI Steinmetz_2013 transcript 593223 593927 . - . gene_id "ST02889"; transcript_id "YPR017C"; -chrXVI Steinmetz_2013 transcript 603747 607349 . - . gene_id "ST02890"; transcript_id "YPR022C"; -chrXVI Steinmetz_2013 transcript 608710 610071 . - . gene_id "ST02891"; transcript_id "YPR023C"; -chrXVI Steinmetz_2013 transcript 613240 614578 . - . gene_id "ST02892"; transcript_id "YPR025C"; -chrXVI Steinmetz_2013 transcript 619637 619977 . - . gene_id "ST02893"; transcript_id "XUT_16R-278"; -chrXVI Steinmetz_2013 transcript 624244 627011 . - . gene_id "ST02894"; transcript_id "YPR029C"; -chrXVI Steinmetz_2013 transcript 627398 629072 . - . gene_id "ST02895"; transcript_id "SUT828"; -chrXVI Steinmetz_2013 transcript 627794 629488 . - . gene_id "ST02896"; transcript_id "XUT_16R-283"; -chrXVI Steinmetz_2013 transcript 637253 639020 . - . gene_id "ST02897"; transcript_id "YPR033C"; -chrXVI Steinmetz_2013 transcript 643751 644950 . - . gene_id "ST02898"; transcript_id "SUT829"; -chrXVI Steinmetz_2013 transcript 646320 647085 . - . gene_id "ST02899"; transcript_id "YPR037C"; -chrXVI Steinmetz_2013 transcript 655033 656610 . - . gene_id "ST02900"; transcript_id "YPR045C"; -chrXVI Steinmetz_2013 transcript 661055 664721 . - . gene_id "ST02901"; transcript_id "YPR049C"; -chrXVI Steinmetz_2013 transcript 674715 675690 . - . gene_id "ST02902"; transcript_id "YPR060C"; -chrXVI Steinmetz_2013 transcript 675851 676915 . - . gene_id "ST02903"; transcript_id "YPR061C"; -chrXVI Steinmetz_2013 transcript 677619 678373 . - . gene_id "ST02904"; transcript_id "YPR063C"; -chrXVI Steinmetz_2013 transcript 682900 684369 . - . gene_id "ST02905"; transcript_id "YPR068C"; -chrXVI Steinmetz_2013 transcript 684492 685461 . - . gene_id "ST02906"; transcript_id "YPR069C"; -chrXVI Steinmetz_2013 transcript 691694 692480 . - . gene_id "ST02907"; transcript_id "YPR073C"; -chrXVI Steinmetz_2013 transcript 692661 694898 . - . gene_id "ST02908"; transcript_id "YPR074C"; -chrXVI Steinmetz_2013 transcript 695621 696878 . - . gene_id "ST02909"; transcript_id "YPR075C"; -chrXVI Steinmetz_2013 transcript 699560 700023 . - . gene_id "ST02910"; transcript_id "CUT910"; -chrXVI Steinmetz_2013 transcript 701990 703973 . - . gene_id "ST02911"; transcript_id "YPR081C"; -chrXVI Steinmetz_2013 transcript 704068 704664 . - . gene_id "ST02912"; transcript_id "YPR082C"; -chrXVI Steinmetz_2013 transcript 708378 709915 . - . gene_id "ST02913"; transcript_id "YPR085C"; -chrXVI Steinmetz_2013 transcript 711329 713051 . - . gene_id "ST02914"; transcript_id "YPR088C"; -chrXVI Steinmetz_2013 transcript 715945 718496 . - . gene_id "ST02915"; transcript_id "YPR091C"; -chrXVI Steinmetz_2013 transcript 719501 720488 . - . gene_id "ST02916"; transcript_id "YPR093C"; -chrXVI Steinmetz_2013 transcript 728899 729567 . - . gene_id "ST02917"; transcript_id "YPR098C"; -chrXVI Steinmetz_2013 transcript 731133 731783 . - . gene_id "ST02918"; transcript_id "YPR102C"; -chrXVI Steinmetz_2013 transcript 733232 736709 . - . gene_id "ST02919"; transcript_id "YPR104C"; -chrXVI Steinmetz_2013 transcript 736911 739620 . - . gene_id "ST02920"; transcript_id "YPR105C"; -chrXVI Steinmetz_2013 transcript 741229 742148 . - . gene_id "ST02921"; transcript_id "YPR107C"; -chrXVI Steinmetz_2013 transcript 745615 746845 . - . gene_id "ST02922"; transcript_id "YPR110C"; -chrXVI Steinmetz_2013 transcript 749152 751971 . - . gene_id "ST02923"; transcript_id "YPR112C"; -chrXVI Steinmetz_2013 transcript 758917 759512 . - . gene_id "ST02924"; transcript_id "CUT913"; -chrXVI Steinmetz_2013 transcript 767106 767467 . - . gene_id "ST02925"; transcript_id "CUT914"; -chrXVI Steinmetz_2013 transcript 773835 775293 . - . gene_id "ST02926"; transcript_id "YPR120C"; -chrXVI Steinmetz_2013 transcript 777566 778208 . - . gene_id "ST02927"; transcript_id "SUT835"; -chrXVI Steinmetz_2013 transcript 785708 787680 . - . gene_id "ST02928"; transcript_id "YPR123C"; -chrXVI Steinmetz_2013 transcript 786647 787616 . - . gene_id "ST02929"; transcript_id "XUT_16R-354"; -chrXVI Steinmetz_2013 transcript 786916 787671 . - . gene_id "ST02930"; transcript_id "SUT837"; -chrXVI Steinmetz_2013 transcript 789443 789612 . - . gene_id "ST02931"; transcript_id "SUT838"; -chrXVI Steinmetz_2013 transcript 791125 792259 . - . gene_id "ST02932"; transcript_id "YPR128C"; -chrXVI Steinmetz_2013 transcript 795899 797285 . - . gene_id "ST02933"; transcript_id "YPR133C"; -chrXVI Steinmetz_2013 transcript 797741 799027 . - . gene_id "ST02934"; transcript_id "SUT840"; -chrXVI Steinmetz_2013 transcript 798045 799018 . - . gene_id "ST02935"; transcript_id "XUT_16R-363"; -chrXVI Steinmetz_2013 transcript 799741 800346 . - . gene_id "ST02936"; transcript_id "XUT_16R-364"; -chrXVI Steinmetz_2013 transcript 801543 801953 . - . gene_id "ST02937"; transcript_id "XUT_16R-366"; -chrXVI Steinmetz_2013 transcript 810843 812683 . - . gene_id "ST02938"; transcript_id "YPR138C"; -chrXVI Steinmetz_2013 transcript 813067 814116 . - . gene_id "ST02939"; transcript_id "YPR139C"; -chrXVI Steinmetz_2013 transcript 815555 818096 . - . gene_id "ST02940"; transcript_id "YPR141C"; -chrXVI Steinmetz_2013 transcript 819694 821446 . - . gene_id "ST02941"; transcript_id "YPR144C"; -chrXVI Steinmetz_2013 transcript 826712 828214 . - . gene_id "ST02942"; transcript_id "YPR148C"; -chrXVI Steinmetz_2013 transcript 828447 829516 . - . gene_id "ST02943"; transcript_id "XUT_16R-375"; -chrXVI Steinmetz_2013 transcript 828455 829529 . - . gene_id "ST02944"; transcript_id "SUT842"; -chrXVI Steinmetz_2013 transcript 829796 830465 . - . gene_id "ST02945"; transcript_id "XUT_16R-376"; -chrXVI Steinmetz_2013 transcript 830970 831708 . - . gene_id "ST02946"; transcript_id "YPR151C"; -chrXVI Steinmetz_2013 transcript 831737 833480 . - . gene_id "ST02947"; transcript_id "YPR152C"; -chrXVI Steinmetz_2013 transcript 835472 837479 . - . gene_id "ST02948"; transcript_id "YPR155C"; -chrXVI Steinmetz_2013 transcript 837692 840071 . - . gene_id "ST02949"; transcript_id "YPR156C"; -chrXVI Steinmetz_2013 transcript 864362 866499 . - . gene_id "ST02950"; transcript_id "YPR161C"; -chrXVI Steinmetz_2013 transcript 866676 868323 . - . gene_id "ST02951"; transcript_id "YPR162C"; -chrXVI Steinmetz_2013 transcript 868490 870041 . - . gene_id "ST02952"; transcript_id "YPR163C"; -chrXVI Steinmetz_2013 transcript 876174 876667 . - . gene_id "ST02953"; transcript_id "YPR166C"; -chrXVI Steinmetz_2013 transcript 876791 877762 . - . gene_id "ST02954"; transcript_id "YPR167C"; -chrXVI Steinmetz_2013 transcript 877643 877969 . - . gene_id "ST02955"; transcript_id "SUT844"; -chrXVI Steinmetz_2013 transcript 882753 883579 . - . gene_id "ST02956"; transcript_id "YPR170C"; -chrXVI Steinmetz_2013 transcript 886471 887869 . - . gene_id "ST02957"; transcript_id "YPR173C"; -chrXVI Steinmetz_2013 transcript 887949 888741 . - . gene_id "ST02958"; transcript_id "YPR174C"; -chrXVI Steinmetz_2013 transcript 890940 892084 . - . gene_id "ST02959"; transcript_id "YPR176C"; -chrXVI Steinmetz_2013 transcript 893759 895783 . - . gene_id "ST02960"; transcript_id "YPR179C"; -chrXVI Steinmetz_2013 transcript 897143 899727 . - . gene_id "ST02961"; transcript_id "YPR181C"; -chrXVI Steinmetz_2013 transcript 900063 900563 . - . gene_id "ST02962"; transcript_id "CUT922"; -chrXVI Steinmetz_2013 transcript 901176 901548 . - . gene_id "ST02963"; transcript_id "CUT923"; -chrXVI Steinmetz_2013 transcript 909608 911027 . - . gene_id "ST02964"; transcript_id "YPR186C"; -chrXVI Steinmetz_2013 transcript 911939 912501 . - . gene_id "ST02965"; transcript_id "YPR188C"; -chrXVI Steinmetz_2013 transcript 916974 919071 . - . gene_id "ST02966"; transcript_id "YPR190C"; -chrXVI Steinmetz_2013 transcript 921059 923671 . - . gene_id "ST02967"; transcript_id "YPR193C"; -chrXVI Steinmetz_2013 transcript 924117 927110 . - . gene_id "ST02968"; transcript_id "YPR194C"; -chrXVI Steinmetz_2013 transcript 927839 928316 . - . gene_id "ST02969"; transcript_id "YPR195C"; -chrXVI Steinmetz_2013 transcript 930132 931111 . - . gene_id "ST02970"; transcript_id "SUT846"; -chrXVI Steinmetz_2013 transcript 933214 933763 . - . gene_id "ST02971"; transcript_id "CUT925"; -chrXVI Steinmetz_2013 transcript 935934 937266 . - . gene_id "ST02972"; transcript_id "SUT847"; -chrXVI Steinmetz_2013 transcript 935941 937604 . - . gene_id "ST02973"; transcript_id "XUT_16R-422"; -chrXVI Steinmetz_2013 transcript 937969 939042 . - . gene_id "ST02974"; transcript_id "YPR199C"; -chrXVI Steinmetz_2013 transcript 939201 941187 . - . gene_id "ST02975"; transcript_id "YPR200C"; -chrXVI Steinmetz_2013 transcript 939769 941230 . - . gene_id "ST02976"; transcript_id "XUT_16R-425"; -chrXVI Steinmetz_2013 transcript 22886 24745 . + . gene_id "ST02977"; transcript_id "YPL274W"; -chrXVI Steinmetz_2013 transcript 25014 26167 . + . gene_id "ST02978"; transcript_id "YPL273W"; -chrXVI Steinmetz_2013 transcript 30049 30384 . + . gene_id "ST02979"; transcript_id "YPL271W"; -chrXVI Steinmetz_2013 transcript 30459 32902 . + . gene_id "ST02980"; transcript_id "YPL270W"; -chrXVI Steinmetz_2013 transcript 33001 35095 . + . gene_id "ST02981"; transcript_id "YPL269W"; -chrXVI Steinmetz_2013 transcript 35205 37862 . + . gene_id "ST02982"; transcript_id "YPL268W"; -chrXVI Steinmetz_2013 transcript 38154 38865 . + . gene_id "ST02983"; transcript_id "YPL267W"; -chrXVI Steinmetz_2013 transcript 39074 40144 . + . gene_id "ST02984"; transcript_id "YPL266W"; -chrXVI Steinmetz_2013 transcript 40920 43148 . + . gene_id "ST02985"; transcript_id "YPL265W"; -chrXVI Steinmetz_2013 transcript 47332 48843 . + . gene_id "ST02986"; transcript_id "YPL262W"; -chrXVI Steinmetz_2013 transcript 49207 51137 . + . gene_id "ST02987"; transcript_id "YPL260W"; -chrXVI Steinmetz_2013 transcript 52974 53503 . + . gene_id "ST02988"; transcript_id "SUT390"; -chrXVI Steinmetz_2013 transcript 63214 64743 . + . gene_id "ST02989"; transcript_id "YPL257W"; -chrXVI Steinmetz_2013 transcript 67673 69115 . + . gene_id "ST02990"; transcript_id "YPL255W"; -chrXVI Steinmetz_2013 transcript 69237 71018 . + . gene_id "ST02991"; transcript_id "YPL254W"; -chrXVI Steinmetz_2013 transcript 74098 74391 . + . gene_id "ST02992"; transcript_id "CUT401"; -chrXVI Steinmetz_2013 transcript 75238 75602 . + . gene_id "ST02993"; transcript_id "SUT392"; -chrXVI Steinmetz_2013 transcript 79575 80748 . + . gene_id "ST02994"; transcript_id "SUT393"; -chrXVI Steinmetz_2013 transcript 79559 82626 . + . gene_id "ST02995"; transcript_id "XUT_16F-30"; -chrXVI Steinmetz_2013 transcript 84476 85402 . + . gene_id "ST02996"; transcript_id "XUT_16F-31"; -chrXVI Steinmetz_2013 transcript 85528 87007 . + . gene_id "ST02997"; transcript_id "YPL245W"; -chrXVI Steinmetz_2013 transcript 88427 90384 . + . gene_id "ST02998"; transcript_id "YPL243W"; -chrXVI Steinmetz_2013 transcript 95597 96452 . + . gene_id "ST02999"; transcript_id "SUT395"; -chrXVI Steinmetz_2013 transcript 99406 100252 . + . gene_id "ST03000"; transcript_id "YPL239W"; -chrXVI Steinmetz_2013 transcript 100453 101481 . + . gene_id "ST03001"; transcript_id "YPL237W"; -chrXVI Steinmetz_2013 transcript 103168 104716 . + . gene_id "ST03002"; transcript_id "YPL235W"; -chrXVI Steinmetz_2013 transcript 106142 106877 . + . gene_id "ST03003"; transcript_id "YPL233W"; -chrXVI Steinmetz_2013 transcript 107112 108226 . + . gene_id "ST03004"; transcript_id "YPL232W"; -chrXVI Steinmetz_2013 transcript 115069 116565 . + . gene_id "ST03005"; transcript_id "YPL230W"; -chrXVI Steinmetz_2013 transcript 117037 117949 . + . gene_id "ST03006"; transcript_id "YPL229W"; -chrXVI Steinmetz_2013 transcript 118239 120238 . + . gene_id "ST03007"; transcript_id "YPL228W"; -chrXVI Steinmetz_2013 transcript 121738 125609 . + . gene_id "ST03008"; transcript_id "YPL226W"; -chrXVI Steinmetz_2013 transcript 125984 126580 . + . gene_id "ST03009"; transcript_id "YPL225W"; -chrXVI Steinmetz_2013 transcript 130050 132318 . + . gene_id "ST03010"; transcript_id "YPL222W"; -chrXVI Steinmetz_2013 transcript 132812 135601 . + . gene_id "ST03011"; transcript_id "YPL221W"; -chrXVI Steinmetz_2013 transcript 135778 136531 . + . gene_id "ST03012"; transcript_id "YPL220W"; -chrXVI Steinmetz_2013 transcript 136708 138324 . + . gene_id "ST03013"; transcript_id "YPL219W"; -chrXVI Steinmetz_2013 transcript 138632 139472 . + . gene_id "ST03014"; transcript_id "YPL218W"; -chrXVI Steinmetz_2013 transcript 147387 148597 . + . gene_id "ST03015"; transcript_id "YPL215W"; -chrXVI Steinmetz_2013 transcript 150578 151479 . + . gene_id "ST03016"; transcript_id "YPL213W"; -chrXVI Steinmetz_2013 transcript 153466 154214 . + . gene_id "ST03017"; transcript_id "YPL211W"; -chrXVI Steinmetz_2013 transcript 157842 159665 . + . gene_id "ST03018"; transcript_id "YPL208W"; -chrXVI Steinmetz_2013 transcript 159832 162420 . + . gene_id "ST03019"; transcript_id "YPL207W"; -chrXVI Steinmetz_2013 transcript 164082 165894 . + . gene_id "ST03020"; transcript_id "YPL204W"; -chrXVI Steinmetz_2013 transcript 166094 167648 . + . gene_id "ST03021"; transcript_id "YPL203W"; -chrXVI Steinmetz_2013 transcript 169641 170283 . + . gene_id "ST03022"; transcript_id "CUT405"; -chrXVI Steinmetz_2013 transcript 171387 172077 . + . gene_id "ST03023"; transcript_id "YPL200W"; -chrXVI Steinmetz_2013 transcript 173125 174795 . + . gene_id "ST03024"; transcript_id "YPL198W"; -chrXVI Steinmetz_2013 transcript 174966 175919 . + . gene_id "ST03025"; transcript_id "YPL196W"; -chrXVI Steinmetz_2013 transcript 176210 179127 . + . gene_id "ST03026"; transcript_id "YPL195W"; -chrXVI Steinmetz_2013 transcript 179252 181338 . + . gene_id "ST03027"; transcript_id "YPL194W"; -chrXVI Steinmetz_2013 transcript 181388 183182 . + . gene_id "ST03028"; transcript_id "YPL193W"; -chrXVI Steinmetz_2013 transcript 188064 188731 . + . gene_id "ST03029"; transcript_id "XUT_16F-73"; -chrXVI Steinmetz_2013 transcript 189046 191105 . + . gene_id "ST03030"; transcript_id "YPL189W"; -chrXVI Steinmetz_2013 transcript 191390 192774 . + . gene_id "ST03031"; transcript_id "YPL188W"; -chrXVI Steinmetz_2013 transcript 193598 194372 . + . gene_id "ST03032"; transcript_id "YPL187W"; -chrXVI Steinmetz_2013 transcript 195186 195664 . + . gene_id "ST03033"; transcript_id "YPL185W"; -chrXVI Steinmetz_2013 transcript 195635 195991 . + . gene_id "ST03034"; transcript_id "SUT396"; -chrXVI Steinmetz_2013 transcript 198005 198903 . + . gene_id "ST03035"; transcript_id "XUT_16F-81"; -chrXVI Steinmetz_2013 transcript 198989 199505 . + . gene_id "ST03036"; transcript_id "YPL183W-A"; -chrXVI Steinmetz_2013 transcript 203296 205049 . + . gene_id "ST03037"; transcript_id "YPL181W"; -chrXVI Steinmetz_2013 transcript 205202 207849 . + . gene_id "ST03038"; transcript_id "YPL180W"; -chrXVI Steinmetz_2013 transcript 207995 210062 . + . gene_id "ST03039"; transcript_id "YPL179W"; -chrXVI Steinmetz_2013 transcript 212110 212901 . + . gene_id "ST03040"; transcript_id "YPL178W"; -chrXVI Steinmetz_2013 transcript 215315 216053 . + . gene_id "ST03041"; transcript_id "XUT_16F-88"; -chrXVI Steinmetz_2013 transcript 218567 220200 . + . gene_id "ST03042"; transcript_id "YPL175W"; -chrXVI Steinmetz_2013 transcript 223077 224199 . + . gene_id "ST03043"; transcript_id "YPL173W"; -chrXVI Steinmetz_2013 transcript 226091 226482 . + . gene_id "ST03044"; transcript_id "CUT409"; -chrXVI Steinmetz_2013 transcript 228257 228928 . + . gene_id "ST03045"; transcript_id "YPL170W"; -chrXVI Steinmetz_2013 transcript 231072 232573 . + . gene_id "ST03046"; transcript_id "YPL168W"; -chrXVI Steinmetz_2013 transcript 237297 239106 . + . gene_id "ST03047"; transcript_id "YPL166W"; -chrXVI Steinmetz_2013 transcript 243221 244173 . + . gene_id "ST03048"; transcript_id "SUT397"; -chrXVI Steinmetz_2013 transcript 246927 250433 . + . gene_id "ST03049"; transcript_id "YPL160W"; -chrXVI Steinmetz_2013 transcript 254706 256162 . + . gene_id "ST03050"; transcript_id "YPL157W"; -chrXVI Steinmetz_2013 transcript 264966 266198 . + . gene_id "ST03051"; transcript_id "YPL152W"; -chrXVI Steinmetz_2013 transcript 271233 272227 . + . gene_id "ST03052"; transcript_id "YPL149W"; -chrXVI Steinmetz_2013 transcript 273174 275980 . + . gene_id "ST03053"; transcript_id "YPL147W"; -chrXVI Steinmetz_2013 transcript 280467 281062 . + . gene_id "ST03054"; transcript_id "YPL144W"; -chrXVI Steinmetz_2013 transcript 282093 283106 . + . gene_id "ST03055"; transcript_id "YPL143W"; -chrXVI Steinmetz_2013 transcript 283270 285733 . + . gene_id "ST03056"; transcript_id "XUT_16F-113"; -chrXVI Steinmetz_2013 transcript 289395 289652 . + . gene_id "ST03057"; transcript_id "SUT399"; -chrXVI Steinmetz_2013 transcript 296995 297552 . + . gene_id "ST03058"; transcript_id "SUT400"; -chrXVI Steinmetz_2013 transcript 297462 298415 . + . gene_id "ST03059"; transcript_id "YPL135W"; -chrXVI Steinmetz_2013 transcript 301566 302674 . + . gene_id "ST03060"; transcript_id "YPL132W"; -chrXVI Steinmetz_2013 transcript 303102 304109 . + . gene_id "ST03061"; transcript_id "YPL131W"; -chrXVI Steinmetz_2013 transcript 305241 306243 . + . gene_id "ST03062"; transcript_id "YPL129W"; -chrXVI Steinmetz_2013 transcript 313229 316550 . + . gene_id "ST03063"; transcript_id "YPL125W"; -chrXVI Steinmetz_2013 transcript 316698 317579 . + . gene_id "ST03064"; transcript_id "YPL124W"; -chrXVI Steinmetz_2013 transcript 322055 323844 . + . gene_id "ST03065"; transcript_id "YPL120W"; -chrXVI Steinmetz_2013 transcript 326542 327748 . + . gene_id "ST03066"; transcript_id "YPL118W"; -chrXVI Steinmetz_2013 transcript 329432 331840 . + . gene_id "ST03067"; transcript_id "YPL116W"; -chrXVI Steinmetz_2013 transcript 335886 337452 . + . gene_id "ST03068"; transcript_id "YPL114W"; -chrXVI Steinmetz_2013 transcript 339898 341025 . + . gene_id "ST03069"; transcript_id "YPL111W"; -chrXVI Steinmetz_2013 transcript 345079 345984 . + . gene_id "ST03070"; transcript_id "SUT402"; -chrXVI Steinmetz_2013 transcript 349078 349965 . + . gene_id "ST03071"; transcript_id "YPL107W"; -chrXVI Steinmetz_2013 transcript 352598 352853 . + . gene_id "ST03072"; transcript_id "SUT403"; -chrXVI Steinmetz_2013 transcript 352598 352889 . + . gene_id "ST03073"; transcript_id "XUT_16F-145"; -chrXVI Steinmetz_2013 transcript 355659 357812 . + . gene_id "ST03074"; transcript_id "YPL104W"; -chrXVI Steinmetz_2013 transcript 360170 361700 . + . gene_id "ST03075"; transcript_id "YPL101W"; -chrXVI Steinmetz_2013 transcript 361819 363408 . + . gene_id "ST03076"; transcript_id "YPL100W"; -chrXVI Steinmetz_2013 transcript 363683 364345 . + . gene_id "ST03077"; transcript_id "XUT_16F-148"; -chrXVI Steinmetz_2013 transcript 363883 364345 . + . gene_id "ST03078"; transcript_id "SUT404"; -chrXVI Steinmetz_2013 transcript 364924 366543 . + . gene_id "ST03079"; transcript_id "YPL097W"; -chrXVI Steinmetz_2013 transcript 366911 368129 . + . gene_id "ST03080"; transcript_id "YPL096W"; -chrXVI Steinmetz_2013 transcript 368827 369661 . + . gene_id "ST03081"; transcript_id "SUT405"; -chrXVI Steinmetz_2013 transcript 370946 373158 . + . gene_id "ST03082"; transcript_id "YPL093W"; -chrXVI Steinmetz_2013 transcript 373661 375268 . + . gene_id "ST03083"; transcript_id "YPL092W"; -chrXVI Steinmetz_2013 transcript 375502 377063 . + . gene_id "ST03084"; transcript_id "YPL091W"; -chrXVI Steinmetz_2013 transcript 379030 381285 . + . gene_id "ST03085"; transcript_id "SUT406"; -chrXVI Steinmetz_2013 transcript 381926 383077 . + . gene_id "ST03086"; transcript_id "YPL088W"; -chrXVI Steinmetz_2013 transcript 383404 384554 . + . gene_id "ST03087"; transcript_id "YPL087W"; -chrXVI Steinmetz_2013 transcript 393981 396722 . + . gene_id "ST03088"; transcript_id "YPL084W"; -chrXVI Steinmetz_2013 transcript 404918 406216 . + . gene_id "ST03089"; transcript_id "YPL081W"; -chrXVI Steinmetz_2013 transcript 406610 407649 . + . gene_id "ST03090"; transcript_id "YPL079W"; -chrXVI Steinmetz_2013 transcript 409097 409430 . + . gene_id "ST03091"; transcript_id "CUT417"; -chrXVI Steinmetz_2013 transcript 410297 412068 . + . gene_id "ST03092"; transcript_id "YPL076W"; -chrXVI Steinmetz_2013 transcript 412176 415580 . + . gene_id "ST03093"; transcript_id "YPL075W"; -chrXVI Steinmetz_2013 transcript 415734 418159 . + . gene_id "ST03094"; transcript_id "YPL074W"; -chrXVI Steinmetz_2013 transcript 418319 420057 . + . gene_id "ST03095"; transcript_id "YPL072W"; -chrXVI Steinmetz_2013 transcript 420741 422888 . + . gene_id "ST03096"; transcript_id "YPL070W"; -chrXVI Steinmetz_2013 transcript 426063 427778 . + . gene_id "ST03097"; transcript_id "YPL066W"; -chrXVI Steinmetz_2013 transcript 427927 428719 . + . gene_id "ST03098"; transcript_id "YPL065W"; -chrXVI Steinmetz_2013 transcript 429815 431440 . + . gene_id "ST03099"; transcript_id "YPL063W"; -chrXVI Steinmetz_2013 transcript 431750 432512 . + . gene_id "ST03100"; transcript_id "YPL062W"; -chrXVI Steinmetz_2013 transcript 432544 434212 . + . gene_id "ST03101"; transcript_id "YPL061W"; -chrXVI Steinmetz_2013 transcript 434284 435817 . + . gene_id "ST03102"; transcript_id "YPL060W"; -chrXVI Steinmetz_2013 transcript 444525 445167 . + . gene_id "ST03103"; transcript_id "YPL059W"; -chrXVI Steinmetz_2013 transcript 453403 454121 . + . gene_id "ST03104"; transcript_id "SUT409"; -chrXVI Steinmetz_2013 transcript 455657 457022 . + . gene_id "ST03105"; transcript_id "YPL054W"; -chrXVI Steinmetz_2013 transcript 458742 459867 . + . gene_id "ST03106"; transcript_id "YPL052W"; -chrXVI Steinmetz_2013 transcript 459928 460726 . + . gene_id "ST03107"; transcript_id "YPL051W"; -chrXVI Steinmetz_2013 transcript 464365 465768 . + . gene_id "ST03108"; transcript_id "YPL048W"; -chrXVI Steinmetz_2013 transcript 465845 466619 . + . gene_id "ST03109"; transcript_id "YPL047W"; -chrXVI Steinmetz_2013 transcript 467157 469895 . + . gene_id "ST03110"; transcript_id "YPL045W"; -chrXVI Steinmetz_2013 transcript 469882 472092 . + . gene_id "ST03111"; transcript_id "YPL043W"; -chrXVI Steinmetz_2013 transcript 480507 481180 . + . gene_id "ST03112"; transcript_id "YPL038W"; -chrXVI Steinmetz_2013 transcript 482269 482742 . + . gene_id "ST03113"; transcript_id "XUT_16F-193"; -chrXVI Steinmetz_2013 transcript 486378 487348 . + . gene_id "ST03114"; transcript_id "YPL034W"; -chrXVI Steinmetz_2013 transcript 492015 492756 . + . gene_id "ST03115"; transcript_id "SUT412"; -chrXVI Steinmetz_2013 transcript 493487 495334 . + . gene_id "ST03116"; transcript_id "YPL030W"; -chrXVI Steinmetz_2013 transcript 495460 497794 . + . gene_id "ST03117"; transcript_id "YPL029W"; -chrXVI Steinmetz_2013 transcript 498032 499388 . + . gene_id "ST03118"; transcript_id "YPL028W"; -chrXVI Steinmetz_2013 transcript 499594 500523 . + . gene_id "ST03119"; transcript_id "YPL027W"; -chrXVI Steinmetz_2013 transcript 503464 504311 . + . gene_id "ST03120"; transcript_id "YPL024W"; -chrXVI Steinmetz_2013 transcript 506605 510210 . + . gene_id "ST03121"; transcript_id "YPL022W"; -chrXVI Steinmetz_2013 transcript 517638 519922 . + . gene_id "ST03122"; transcript_id "YPL018W"; -chrXVI Steinmetz_2013 transcript 527513 528948 . + . gene_id "ST03123"; transcript_id "YPL014W"; -chrXVI Steinmetz_2013 transcript 534953 535712 . + . gene_id "ST03124"; transcript_id "YPL010W"; -chrXVI Steinmetz_2013 transcript 539149 542048 . + . gene_id "ST03125"; transcript_id "YPL008W"; -chrXVI Steinmetz_2013 transcript 544003 544526 . + . gene_id "ST03126"; transcript_id "XUT_16F-213"; -chrXVI Steinmetz_2013 transcript 544039 544328 . + . gene_id "ST03127"; transcript_id "SUT414"; -chrXVI Steinmetz_2013 transcript 544583 548211 . + . gene_id "ST03128"; transcript_id "YPL006W"; -chrXVI Steinmetz_2013 transcript 548453 550412 . + . gene_id "ST03129"; transcript_id "YPL005W"; -chrXVI Steinmetz_2013 transcript 552008 553429 . + . gene_id "ST03130"; transcript_id "YPL003W"; -chrXVI Steinmetz_2013 transcript 554570 555783 . + . gene_id "ST03131"; transcript_id "YPL001W"; -chrXVI Steinmetz_2013 transcript 556282 557959 . + . gene_id "ST03132"; transcript_id "YPR001W"; -chrXVI Steinmetz_2013 transcript 558264 560132 . + . gene_id "ST03133"; transcript_id "YPR002W"; -chrXVI Steinmetz_2013 transcript 565310 565614 . + . gene_id "ST03134"; transcript_id "CUT423"; -chrXVI Steinmetz_2013 transcript 565349 566607 . + . gene_id "ST03135"; transcript_id "XUT_16F-226"; -chrXVI Steinmetz_2013 transcript 568118 569216 . + . gene_id "ST03136"; transcript_id "XUT_16F-229"; -chrXVI Steinmetz_2013 transcript 572701 575220 . + . gene_id "ST03137"; transcript_id "YPR008W"; -chrXVI Steinmetz_2013 transcript 576458 577440 . + . gene_id "ST03138"; transcript_id "YPR009W"; -chrXVI Steinmetz_2013 transcript 586646 588794 . + . gene_id "ST03139"; transcript_id "SUT417"; -chrXVI Steinmetz_2013 transcript 589012 589814 . + . gene_id "ST03140"; transcript_id "SUT418"; -chrXVI Steinmetz_2013 transcript 594386 596431 . + . gene_id "ST03141"; transcript_id "YPR018W"; -chrXVI Steinmetz_2013 transcript 596674 599658 . + . gene_id "ST03142"; transcript_id "YPR019W"; -chrXVI Steinmetz_2013 transcript 599821 600345 . + . gene_id "ST03143"; transcript_id "YPR020W"; -chrXVI Steinmetz_2013 transcript 607534 608474 . + . gene_id "ST03144"; transcript_id "SUT420"; -chrXVI Steinmetz_2013 transcript 610306 613212 . + . gene_id "ST03145"; transcript_id "YPR024W"; -chrXVI Steinmetz_2013 transcript 620187 621319 . + . gene_id "ST03146"; transcript_id "SUT421"; -chrXVI Steinmetz_2013 transcript 620187 621942 . + . gene_id "ST03147"; transcript_id "XUT_16F-247"; -chrXVI Steinmetz_2013 transcript 623472 624351 . + . gene_id "ST03148"; transcript_id "YPR028W"; -chrXVI Steinmetz_2013 transcript 627858 631322 . + . gene_id "ST03149"; transcript_id "YPR030W"; -chrXVI Steinmetz_2013 transcript 631489 633836 . + . gene_id "ST03150"; transcript_id "YPR031W"; -chrXVI Steinmetz_2013 transcript 634073 637327 . + . gene_id "ST03151"; transcript_id "YPR032W"; -chrXVI Steinmetz_2013 transcript 639447 641207 . + . gene_id "ST03152"; transcript_id "YPR034W"; -chrXVI Steinmetz_2013 transcript 642091 643471 . + . gene_id "ST03153"; transcript_id "YPR035W"; -chrXVI Steinmetz_2013 transcript 643780 645362 . + . gene_id "ST03154"; transcript_id "YPR036W"; -chrXVI Steinmetz_2013 transcript 645875 646419 . + . gene_id "ST03155"; transcript_id "YPR036W-A"; -chrXVI Steinmetz_2013 transcript 648597 650075 . + . gene_id "ST03156"; transcript_id "YPR041W"; -chrXVI Steinmetz_2013 transcript 654135 654920 . + . gene_id "ST03157"; transcript_id "YPR043W"; -chrXVI Steinmetz_2013 transcript 656789 657399 . + . gene_id "ST03158"; transcript_id "YPR046W"; -chrXVI Steinmetz_2013 transcript 657469 659042 . + . gene_id "ST03159"; transcript_id "YPR047W"; -chrXVI Steinmetz_2013 transcript 659158 661118 . + . gene_id "ST03160"; transcript_id "YPR048W"; -chrXVI Steinmetz_2013 transcript 664938 665598 . + . gene_id "ST03161"; transcript_id "YPR051W"; -chrXVI Steinmetz_2013 transcript 665584 667495 . + . gene_id "ST03162"; transcript_id "YPR054W"; -chrXVI Steinmetz_2013 transcript 667629 670936 . + . gene_id "ST03163"; transcript_id "YPR055W"; -chrXVI Steinmetz_2013 transcript 671103 672243 . + . gene_id "ST03164"; transcript_id "YPR056W"; -chrXVI Steinmetz_2013 transcript 672466 673552 . + . gene_id "ST03165"; transcript_id "YPR057W"; -chrXVI Steinmetz_2013 transcript 673738 674757 . + . gene_id "ST03166"; transcript_id "YPR058W"; -chrXVI Steinmetz_2013 transcript 677136 677743 . + . gene_id "ST03167"; transcript_id "YPR062W"; -chrXVI Steinmetz_2013 transcript 679663 681181 . + . gene_id "ST03168"; transcript_id "YPR065W"; -chrXVI Steinmetz_2013 transcript 682192 682873 . + . gene_id "ST03169"; transcript_id "YPR067W"; -chrXVI Steinmetz_2013 transcript 685857 687944 . + . gene_id "ST03170"; transcript_id "YPR070W"; -chrXVI Steinmetz_2013 transcript 688145 689342 . + . gene_id "ST03171"; transcript_id "YPR071W"; -chrXVI Steinmetz_2013 transcript 690006 691865 . + . gene_id "ST03172"; transcript_id "YPR072W"; -chrXVI Steinmetz_2013 transcript 691907 692184 . + . gene_id "ST03173"; transcript_id "CUT429"; -chrXVI Steinmetz_2013 transcript 695318 695705 . + . gene_id "ST03174"; transcript_id "CUT430"; -chrXVI Steinmetz_2013 transcript 697552 698352 . + . gene_id "ST03175"; transcript_id "XUT_16F-280"; -chrXVI Steinmetz_2013 transcript 698772 700097 . + . gene_id "ST03176"; transcript_id "YPR079W"; -chrXVI Steinmetz_2013 transcript 700563 702091 . + . gene_id "ST03177"; transcript_id "YPR080W"; -chrXVI Steinmetz_2013 transcript 704830 706714 . + . gene_id "ST03178"; transcript_id "YPR083W"; -chrXVI Steinmetz_2013 transcript 706842 708485 . + . gene_id "ST03179"; transcript_id "YPR084W"; -chrXVI Steinmetz_2013 transcript 710068 711308 . + . gene_id "ST03180"; transcript_id "YPR086W"; -chrXVI Steinmetz_2013 transcript 713236 716081 . + . gene_id "ST03181"; transcript_id "YPR089W"; -chrXVI Steinmetz_2013 transcript 720596 721030 . + . gene_id "ST03182"; transcript_id "YPR094W"; -chrXVI Steinmetz_2013 transcript 725158 728782 . + . gene_id "ST03183"; transcript_id "YPR097W"; -chrXVI Steinmetz_2013 transcript 729763 730312 . + . gene_id "ST03184"; transcript_id "YPR100W"; -chrXVI Steinmetz_2013 transcript 730467 731233 . + . gene_id "ST03185"; transcript_id "YPR101W"; -chrXVI Steinmetz_2013 transcript 732281 733270 . + . gene_id "ST03186"; transcript_id "YPR103W"; -chrXVI Steinmetz_2013 transcript 740049 741489 . + . gene_id "ST03187"; transcript_id "YPR106W"; -chrXVI Steinmetz_2013 transcript 742374 743936 . + . gene_id "ST03188"; transcript_id "YPR108W"; -chrXVI Steinmetz_2013 transcript 744517 745684 . + . gene_id "ST03189"; transcript_id "YPR109W"; -chrXVI Steinmetz_2013 transcript 747269 749055 . + . gene_id "ST03190"; transcript_id "YPR111W"; -chrXVI Steinmetz_2013 transcript 752232 753015 . + . gene_id "ST03191"; transcript_id "YPR113W"; -chrXVI Steinmetz_2013 transcript 753223 754369 . + . gene_id "ST03192"; transcript_id "YPR114W"; -chrXVI Steinmetz_2013 transcript 754678 758367 . + . gene_id "ST03193"; transcript_id "YPR115W"; -chrXVI Steinmetz_2013 transcript 758648 759850 . + . gene_id "ST03194"; transcript_id "YPR116W"; -chrXVI Steinmetz_2013 transcript 767723 769058 . + . gene_id "ST03195"; transcript_id "YPR118W"; -chrXVI Steinmetz_2013 transcript 771310 773249 . + . gene_id "ST03196"; transcript_id "YPR119W"; -chrXVI Steinmetz_2013 transcript 778422 780364 . + . gene_id "ST03197"; transcript_id "YPR121W"; -chrXVI Steinmetz_2013 transcript 786036 787661 . + . gene_id "ST03198"; transcript_id "YPR124W"; -chrXVI Steinmetz_2013 transcript 787865 789508 . + . gene_id "ST03199"; transcript_id "YPR125W"; -chrXVI Steinmetz_2013 transcript 789894 791200 . + . gene_id "ST03200"; transcript_id "YPR127W"; -chrXVI Steinmetz_2013 transcript 792665 793815 . + . gene_id "ST03201"; transcript_id "YPR129W"; -chrXVI Steinmetz_2013 transcript 794941 795860 . + . gene_id "ST03202"; transcript_id "YPR132W"; -chrXVI Steinmetz_2013 transcript 797528 797868 . + . gene_id "ST03203"; transcript_id "YPR133W-A"; -chrXVI Steinmetz_2013 transcript 798042 798990 . + . gene_id "ST03204"; transcript_id "YPR134W"; -chrXVI Steinmetz_2013 transcript 799201 802074 . + . gene_id "ST03205"; transcript_id "YPR135W"; -chrXVI Steinmetz_2013 transcript 802280 804240 . + . gene_id "ST03206"; transcript_id "YPR137W"; -chrXVI Steinmetz_2013 transcript 813219 813740 . + . gene_id "ST03207"; transcript_id "SUT424"; -chrXVI Steinmetz_2013 transcript 814301 815631 . + . gene_id "ST03208"; transcript_id "YPR140W"; -chrXVI Steinmetz_2013 transcript 818285 819249 . + . gene_id "ST03209"; transcript_id "YPR143W"; -chrXVI Steinmetz_2013 transcript 822578 824478 . + . gene_id "ST03210"; transcript_id "YPR145W"; -chrXVI Steinmetz_2013 transcript 829754 830604 . + . gene_id "ST03211"; transcript_id "YPR149W"; -chrXVI Steinmetz_2013 transcript 833648 834395 . + . gene_id "ST03212"; transcript_id "YPR153W"; -chrXVI Steinmetz_2013 transcript 834548 835417 . + . gene_id "ST03213"; transcript_id "YPR154W"; -chrXVI Steinmetz_2013 transcript 841215 842785 . + . gene_id "ST03214"; transcript_id "YPR157W"; -chrXVI Steinmetz_2013 transcript 843195 844178 . + . gene_id "ST03215"; transcript_id "YPR158W"; -chrXVI Steinmetz_2013 transcript 857395 860046 . + . gene_id "ST03216"; transcript_id "YPR159W"; -chrXVI Steinmetz_2013 transcript 860676 861196 . + . gene_id "ST03217"; transcript_id "SUT426"; -chrXVI Steinmetz_2013 transcript 875171 876131 . + . gene_id "ST03218"; transcript_id "YPR165W"; -chrXVI Steinmetz_2013 transcript 878656 880244 . + . gene_id "ST03219"; transcript_id "YPR169W"; -chrXVI Steinmetz_2013 transcript 883792 885634 . + . gene_id "ST03220"; transcript_id "YPR171W"; -chrXVI Steinmetz_2013 transcript 885764 886541 . + . gene_id "ST03221"; transcript_id "YPR172W"; -chrXVI Steinmetz_2013 transcript 888955 891076 . + . gene_id "ST03222"; transcript_id "YPR175W"; -chrXVI Steinmetz_2013 transcript 892302 893820 . + . gene_id "ST03223"; transcript_id "YPR178W"; -chrXVI Steinmetz_2013 transcript 895935 897038 . + . gene_id "ST03224"; transcript_id "YPR180W"; -chrXVI Steinmetz_2013 transcript 900132 900531 . + . gene_id "ST03225"; transcript_id "YPR182W"; -chrXVI Steinmetz_2013 transcript 900718 901641 . + . gene_id "ST03226"; transcript_id "YPR183W"; -chrXVI Steinmetz_2013 transcript 906908 909508 . + . gene_id "ST03227"; transcript_id "YPR185W"; -chrXVI Steinmetz_2013 transcript 911241 911881 . + . gene_id "ST03228"; transcript_id "YPR187W"; -chrXVI Steinmetz_2013 transcript 912627 917089 . + . gene_id "ST03229"; transcript_id "YPR189W"; -chrXVI Steinmetz_2013 transcript 919321 920715 . + . gene_id "ST03230"; transcript_id "YPR191W"; -chrXVI Steinmetz_2013 transcript 921845 922835 . + . gene_id "ST03231"; transcript_id "YPR192W"; -chrXVI Steinmetz_2013 transcript 927797 928465 . + . gene_id "ST03232"; transcript_id "SUT429"; -chrXVI Steinmetz_2013 transcript 928692 930998 . + . gene_id "ST03233"; transcript_id "SUT430"; -chrXVI Steinmetz_2013 transcript 928692 930575 . + . gene_id "ST03234"; transcript_id "XUT_16F-377"; -chrXVI Steinmetz_2013 transcript 931347 933220 . + . gene_id "ST03235"; transcript_id "YPR196W"; -chrXVI Steinmetz_2013 transcript 933979 935755 . + . gene_id "ST03236"; transcript_id "YPR198W"; -chrXVI Steinmetz_2013 transcript 937319 938007 . + . gene_id "ST03237"; transcript_id "SUT431"; -chrXVI Steinmetz_2013 transcript 937319 938140 . + . gene_id "ST03238"; transcript_id "XUT_16F-383"; -chrXVI Steinmetz_2013 transcript 939770 941977 . + . gene_id "ST03239"; transcript_id "YPR201W"; -chrII Steinmetz_2013 transcript 9835 10551 . - . gene_id "ST03240"; transcript_id "YBL107C"; -chrII Steinmetz_2013 transcript 10780 13931 . - . gene_id "ST03241"; transcript_id "YBL106C"; -chrII Steinmetz_2013 transcript 14104 17962 . - . gene_id "ST03242"; transcript_id "YBL105C"; -chrII Steinmetz_2013 transcript 18152 21307 . - . gene_id "ST03243"; transcript_id "YBL104C"; -chrII Steinmetz_2013 transcript 21602 23802 . - . gene_id "ST03244"; transcript_id "YBL103C"; -chrII Steinmetz_2013 transcript 24781 28406 . - . gene_id "ST03245"; transcript_id "YBL101C"; -chrII Steinmetz_2013 transcript 44106 44998 . - . gene_id "ST03246"; transcript_id "YBL093C"; -chrII Steinmetz_2013 transcript 46433 47186 . - . gene_id "ST03247"; transcript_id "YBL091C-A"; -chrII Steinmetz_2013 transcript 47263 48650 . - . gene_id "ST03248"; transcript_id "YBL091C"; -chrII Steinmetz_2013 transcript 59717 60762 . - . gene_id "ST03249"; transcript_id "YBL087C"; -chrII Steinmetz_2013 transcript 61155 62662 . - . gene_id "ST03250"; transcript_id "YBL086C"; -chrII Steinmetz_2013 transcript 72965 74711 . - . gene_id "ST03251"; transcript_id "YBL080C"; -chrII Steinmetz_2013 transcript 80214 80775 . - . gene_id "ST03252"; transcript_id "YBL078C"; -chrII Steinmetz_2013 transcript 80947 84277 . - . gene_id "ST03253"; transcript_id "YBL076C"; -chrII Steinmetz_2013 transcript 84418 86617 . - . gene_id "ST03254"; transcript_id "YBL075C"; -chrII Steinmetz_2013 transcript 86499 87800 . - . gene_id "ST03255"; transcript_id "YBL074C"; -chrII Steinmetz_2013 transcript 88412 89450 . - . gene_id "ST03256"; transcript_id "YBL072C"; -chrII Steinmetz_2013 transcript 91434 92222 . - . gene_id "ST03257"; transcript_id "XUT_2R-31"; -chrII Steinmetz_2013 transcript 93479 95912 . - . gene_id "ST03258"; transcript_id "YBL067C"; -chrII Steinmetz_2013 transcript 96342 100154 . - . gene_id "ST03259"; transcript_id "YBL066C"; -chrII Steinmetz_2013 transcript 100299 101188 . - . gene_id "ST03260"; transcript_id "YBL064C"; -chrII Steinmetz_2013 transcript 105260 107515 . - . gene_id "ST03261"; transcript_id "YBL061C"; -chrII Steinmetz_2013 transcript 109882 110551 . - . gene_id "ST03262"; transcript_id "YBL059C-A"; -chrII Steinmetz_2013 transcript 112728 113447 . - . gene_id "ST03263"; transcript_id "YBL057C"; -chrII Steinmetz_2013 transcript 115479 116837 . - . gene_id "ST03264"; transcript_id "YBL055C"; -chrII Steinmetz_2013 transcript 119306 122102 . - . gene_id "ST03265"; transcript_id "YBL052C"; -chrII Steinmetz_2013 transcript 122306 124822 . - . gene_id "ST03266"; transcript_id "YBL051C"; -chrII Steinmetz_2013 transcript 126093 127567 . - . gene_id "ST03267"; transcript_id "SUT438"; -chrII Steinmetz_2013 transcript 127682 132211 . - . gene_id "ST03268"; transcript_id "YBL047C"; -chrII Steinmetz_2013 transcript 133961 135702 . - . gene_id "ST03269"; transcript_id "YBL045C"; -chrII Steinmetz_2013 transcript 138290 140316 . - . gene_id "ST03270"; transcript_id "YBL042C"; -chrII Steinmetz_2013 transcript 142045 142911 . - . gene_id "ST03271"; transcript_id "YBL040C"; -chrII Steinmetz_2013 transcript 150301 151233 . - . gene_id "ST03272"; transcript_id "YBL036C"; -chrII Steinmetz_2013 transcript 151447 153691 . - . gene_id "ST03273"; transcript_id "YBL035C"; -chrII Steinmetz_2013 transcript 158589 159721 . - . gene_id "ST03274"; transcript_id "YBL033C"; -chrII Steinmetz_2013 transcript 159863 160310 . - . gene_id "ST03275"; transcript_id "XUT_2R-56"; -chrII Steinmetz_2013 transcript 162741 164118 . - . gene_id "ST03276"; transcript_id "YBL030C"; -chrII Steinmetz_2013 transcript 164360 164841 . - . gene_id "ST03277"; transcript_id "YBL029C-A"; -chrII Steinmetz_2013 transcript 167429 167885 . - . gene_id "ST03278"; transcript_id "YBL028C"; -chrII Steinmetz_2013 transcript 169358 169894 . - . gene_id "ST03279"; transcript_id "SUT440"; -chrII Steinmetz_2013 transcript 169358 170082 . - . gene_id "ST03280"; transcript_id "XUT_2R-65"; -chrII Steinmetz_2013 transcript 170101 170438 . - . gene_id "ST03281"; transcript_id "SUT441"; -chrII Steinmetz_2013 transcript 174732 177579 . - . gene_id "ST03282"; transcript_id "YBL023C"; -chrII Steinmetz_2013 transcript 177798 181394 . - . gene_id "ST03283"; transcript_id "YBL022C"; -chrII Steinmetz_2013 transcript 181490 182118 . - . gene_id "ST03284"; transcript_id "YBL021C"; -chrII Steinmetz_2013 transcript 185941 186505 . - . gene_id "ST03285"; transcript_id "YBL018C"; -chrII Steinmetz_2013 transcript 198923 201777 . - . gene_id "ST03286"; transcript_id "YBL014C"; -chrII Steinmetz_2013 transcript 205899 206952 . - . gene_id "ST03287"; transcript_id "YBL010C"; -chrII Steinmetz_2013 transcript 212467 216418 . - . gene_id "ST03288"; transcript_id "YBL007C"; -chrII Steinmetz_2013 transcript 216405 217137 . - . gene_id "ST03289"; transcript_id "YBL006C"; -chrII Steinmetz_2013 transcript 218249 220787 . - . gene_id "ST03290"; transcript_id "XUT_2R-85"; -chrII Steinmetz_2013 transcript 235221 235819 . - . gene_id "ST03291"; transcript_id "YBL003C"; -chrII Steinmetz_2013 transcript 235911 236281 . - . gene_id "ST03292"; transcript_id "SUT442"; -chrII Steinmetz_2013 transcript 237078 237478 . - . gene_id "ST03293"; transcript_id "YBL001C"; -chrII Steinmetz_2013 transcript 238872 241339 . - . gene_id "ST03294"; transcript_id "YBR001C"; -chrII Steinmetz_2013 transcript 241589 242584 . - . gene_id "ST03295"; transcript_id "YBR002C"; -chrII Steinmetz_2013 transcript 244273 245683 . - . gene_id "ST03296"; transcript_id "YBR004C"; -chrII Steinmetz_2013 transcript 246918 248558 . - . gene_id "ST03297"; transcript_id "SUT443"; -chrII Steinmetz_2013 transcript 248623 251106 . - . gene_id "ST03298"; transcript_id "YBR007C"; -chrII Steinmetz_2013 transcript 252403 254427 . - . gene_id "ST03299"; transcript_id "YBR008C"; -chrII Steinmetz_2013 transcript 255205 255723 . - . gene_id "ST03300"; transcript_id "YBR009C"; -chrII Steinmetz_2013 transcript 255701 256190 . - . gene_id "ST03301"; transcript_id "SUT444"; -chrII Steinmetz_2013 transcript 257000 258006 . - . gene_id "ST03302"; transcript_id "YBR011C"; -chrII Steinmetz_2013 transcript 266614 267396 . - . gene_id "ST03303"; transcript_id "YBR014C"; -chrII Steinmetz_2013 transcript 267568 269631 . - . gene_id "ST03304"; transcript_id "YBR015C"; -chrII Steinmetz_2013 transcript 270845 273765 . - . gene_id "ST03305"; transcript_id "YBR017C"; -chrII Steinmetz_2013 transcript 274272 275547 . - . gene_id "ST03306"; transcript_id "YBR018C"; -chrII Steinmetz_2013 transcript 276143 278377 . - . gene_id "ST03307"; transcript_id "YBR019C"; -chrII Steinmetz_2013 transcript 284226 288054 . - . gene_id "ST03308"; transcript_id "YBR023C"; -chrII Steinmetz_2013 transcript 288326 289159 . - . gene_id "ST03309"; transcript_id "XUT_2R-121"; -chrII Steinmetz_2013 transcript 290470 291896 . - . gene_id "ST03310"; transcript_id "YBR025C"; -chrII Steinmetz_2013 transcript 292761 294022 . - . gene_id "ST03311"; transcript_id "YBR026C"; -chrII Steinmetz_2013 transcript 294382 296083 . - . gene_id "ST03312"; transcript_id "YBR028C"; -chrII Steinmetz_2013 transcript 296238 297774 . - . gene_id "ST03313"; transcript_id "YBR029C"; -chrII Steinmetz_2013 transcript 301366 303265 . - . gene_id "ST03314"; transcript_id "XUT_2R-127"; -chrII Steinmetz_2013 transcript 301366 304484 . - . gene_id "ST03315"; transcript_id "SUT445"; -chrII Steinmetz_2013 transcript 304740 305999 . - . gene_id "ST03316"; transcript_id "YBR034C"; -chrII Steinmetz_2013 transcript 306170 306985 . - . gene_id "ST03317"; transcript_id "YBR035C"; -chrII Steinmetz_2013 transcript 308887 310361 . - . gene_id "ST03318"; transcript_id "YBR036C"; -chrII Steinmetz_2013 transcript 310495 311486 . - . gene_id "ST03319"; transcript_id "YBR037C"; -chrII Steinmetz_2013 transcript 320349 321654 . - . gene_id "ST03320"; transcript_id "YBR042C"; -chrII Steinmetz_2013 transcript 321745 324094 . - . gene_id "ST03321"; transcript_id "YBR043C"; -chrII Steinmetz_2013 transcript 324265 326092 . - . gene_id "ST03322"; transcript_id "YBR044C"; -chrII Steinmetz_2013 transcript 328035 330200 . - . gene_id "ST03323"; transcript_id "YBR045C"; -chrII Steinmetz_2013 transcript 330236 331542 . - . gene_id "ST03324"; transcript_id "YBR046C"; -chrII Steinmetz_2013 transcript 334141 336967 . - . gene_id "ST03325"; transcript_id "YBR049C"; -chrII Steinmetz_2013 transcript 337145 338387 . - . gene_id "ST03326"; transcript_id "YBR050C"; -chrII Steinmetz_2013 transcript 338663 339416 . - . gene_id "ST03327"; transcript_id "YBR052C"; -chrII Steinmetz_2013 transcript 339606 340763 . - . gene_id "ST03328"; transcript_id "YBR053C"; -chrII Steinmetz_2013 transcript 344509 347308 . - . gene_id "ST03329"; transcript_id "YBR055C"; -chrII Steinmetz_2013 transcript 349619 350766 . - . gene_id "ST03330"; transcript_id "XUT_2R-154"; -chrII Steinmetz_2013 transcript 352055 353383 . - . gene_id "ST03331"; transcript_id "YBR057C"; -chrII Steinmetz_2013 transcript 353652 356039 . - . gene_id "ST03332"; transcript_id "YBR058C"; -chrII Steinmetz_2013 transcript 356153 356625 . - . gene_id "ST03333"; transcript_id "YBR058C-A"; -chrII Steinmetz_2013 transcript 356751 360337 . - . gene_id "ST03334"; transcript_id "YBR059C"; -chrII Steinmetz_2013 transcript 360595 362606 . - . gene_id "ST03335"; transcript_id "YBR060C"; -chrII Steinmetz_2013 transcript 364634 365726 . - . gene_id "ST03336"; transcript_id "YBR061C"; -chrII Steinmetz_2013 transcript 365872 366610 . - . gene_id "ST03337"; transcript_id "YBR062C"; -chrII Steinmetz_2013 transcript 366715 368317 . - . gene_id "ST03338"; transcript_id "YBR063C"; -chrII Steinmetz_2013 transcript 368226 369720 . - . gene_id "ST03339"; transcript_id "YBR065C"; -chrII Steinmetz_2013 transcript 369938 370782 . - . gene_id "ST03340"; transcript_id "YBR066C"; -chrII Steinmetz_2013 transcript 371965 372786 . - . gene_id "ST03341"; transcript_id "YBR067C"; -chrII Steinmetz_2013 transcript 373642 375729 . - . gene_id "ST03342"; transcript_id "YBR068C"; -chrII Steinmetz_2013 transcript 376412 378538 . - . gene_id "ST03343"; transcript_id "YBR069C"; -chrII Steinmetz_2013 transcript 379178 379955 . - . gene_id "ST03344"; transcript_id "YBR070C"; -chrII Steinmetz_2013 transcript 380303 381074 . - . gene_id "ST03345"; transcript_id "XUT_2R-170"; -chrII Steinmetz_2013 transcript 391146 391683 . - . gene_id "ST03346"; transcript_id "YBR076C-A"; -chrII Steinmetz_2013 transcript 395294 398302 . - . gene_id "ST03347"; transcript_id "YBR079C"; -chrII Steinmetz_2013 transcript 398486 400916 . - . gene_id "ST03348"; transcript_id "YBR080C"; -chrII Steinmetz_2013 transcript 406461 407255 . - . gene_id "ST03349"; transcript_id "YBR082C"; -chrII Steinmetz_2013 transcript 414132 415283 . - . gene_id "ST03350"; transcript_id "YBR084C-A"; -chrII Steinmetz_2013 transcript 417005 417446 . - . gene_id "ST03351"; transcript_id "XUT_2R-183"; -chrII Steinmetz_2013 transcript 418548 419193 . - . gene_id "ST03352"; transcript_id "YBR085C-A"; -chrII Steinmetz_2013 transcript 420069 423332 . - . gene_id "ST03353"; transcript_id "YBR086C"; -chrII Steinmetz_2013 transcript 424949 425806 . - . gene_id "ST03354"; transcript_id "YBR088C"; -chrII Steinmetz_2013 transcript 427065 427525 . - . gene_id "ST03355"; transcript_id "YBR091C"; -chrII Steinmetz_2013 transcript 427647 429130 . - . gene_id "ST03356"; transcript_id "YBR092C"; -chrII Steinmetz_2013 transcript 429481 430986 . - . gene_id "ST03357"; transcript_id "YBR093C"; -chrII Steinmetz_2013 transcript 434314 435722 . - . gene_id "ST03358"; transcript_id "YBR095C"; -chrII Steinmetz_2013 transcript 443785 444743 . - . gene_id "ST03359"; transcript_id "YBR101C"; -chrII Steinmetz_2013 transcript 444957 447387 . - . gene_id "ST03360"; transcript_id "YBR102C"; -chrII Steinmetz_2013 transcript 450759 451992 . - . gene_id "ST03361"; transcript_id "YBR105C"; -chrII Steinmetz_2013 transcript 453227 454579 . - . gene_id "ST03362"; transcript_id "YBR107C"; -chrII Steinmetz_2013 transcript 457721 458406 . - . gene_id "ST03363"; transcript_id "YBR109C"; -chrII Steinmetz_2013 transcript 461107 461881 . - . gene_id "ST03364"; transcript_id "YBR111C"; -chrII Steinmetz_2013 transcript 462642 465945 . - . gene_id "ST03365"; transcript_id "YBR112C"; -chrII Steinmetz_2013 transcript 480375 481006 . - . gene_id "ST03366"; transcript_id "YBR120C"; -chrII Steinmetz_2013 transcript 483768 484536 . - . gene_id "ST03367"; transcript_id "YBR122C"; -chrII Steinmetz_2013 transcript 484704 486754 . - . gene_id "ST03368"; transcript_id "YBR123C"; -chrII Steinmetz_2013 transcript 488774 490499 . - . gene_id "ST03369"; transcript_id "YBR126C"; -chrII Steinmetz_2013 transcript 491103 492886 . - . gene_id "ST03370"; transcript_id "YBR127C"; -chrII Steinmetz_2013 transcript 493003 494161 . - . gene_id "ST03371"; transcript_id "YBR128C"; -chrII Steinmetz_2013 transcript 494219 495384 . - . gene_id "ST03372"; transcript_id "YBR129C"; -chrII Steinmetz_2013 transcript 495479 496929 . - . gene_id "ST03373"; transcript_id "YBR130C"; -chrII Steinmetz_2013 transcript 499349 501594 . - . gene_id "ST03374"; transcript_id "YBR132C"; -chrII Steinmetz_2013 transcript 501760 504446 . - . gene_id "ST03375"; transcript_id "YBR133C"; -chrII Steinmetz_2013 transcript 513613 515366 . - . gene_id "ST03376"; transcript_id "YBR138C"; -chrII Steinmetz_2013 transcript 526857 528069 . - . gene_id "ST03377"; transcript_id "YBR141C"; -chrII Steinmetz_2013 transcript 530730 532210 . - . gene_id "ST03378"; transcript_id "YBR143C"; -chrII Steinmetz_2013 transcript 539696 541048 . - . gene_id "ST03379"; transcript_id "SUT447"; -chrII Steinmetz_2013 transcript 548266 549100 . - . gene_id "ST03380"; transcript_id "YBR154C"; -chrII Steinmetz_2013 transcript 550927 553237 . - . gene_id "ST03381"; transcript_id "YBR156C"; -chrII Steinmetz_2013 transcript 553414 555160 . - . gene_id "ST03382"; transcript_id "YBR157C"; -chrII Steinmetz_2013 transcript 563053 564706 . - . gene_id "ST03383"; transcript_id "YBR162C"; -chrII Steinmetz_2013 transcript 567773 568545 . - . gene_id "ST03384"; transcript_id "YBR164C"; -chrII Steinmetz_2013 transcript 569741 571243 . - . gene_id "ST03385"; transcript_id "YBR166C"; -chrII Steinmetz_2013 transcript 571355 571949 . - . gene_id "ST03386"; transcript_id "YBR167C"; -chrII Steinmetz_2013 transcript 573737 576021 . - . gene_id "ST03387"; transcript_id "YBR169C"; -chrII Steinmetz_2013 transcript 576214 578136 . - . gene_id "ST03388"; transcript_id "YBR170C"; -chrII Steinmetz_2013 transcript 579012 581467 . - . gene_id "ST03389"; transcript_id "YBR172C"; -chrII Steinmetz_2013 transcript 581545 582200 . - . gene_id "ST03390"; transcript_id "YBR173C"; -chrII Steinmetz_2013 transcript 582177 583410 . - . gene_id "ST03391"; transcript_id "YBR174C"; -chrII Steinmetz_2013 transcript 584680 586184 . - . gene_id "ST03392"; transcript_id "YBR177C"; -chrII Steinmetz_2013 transcript 586481 589179 . - . gene_id "ST03393"; transcript_id "YBR179C"; -chrII Steinmetz_2013 transcript 590080 591361 . - . gene_id "ST03394"; transcript_id "SUT448"; -chrII Steinmetz_2013 transcript 591623 592803 . - . gene_id "ST03395"; transcript_id "YBR181C"; -chrII Steinmetz_2013 transcript 593225 595034 . - . gene_id "ST03396"; transcript_id "YBR182C"; -chrII Steinmetz_2013 transcript 595204 595606 . - . gene_id "ST03397"; transcript_id "YBR182C-A"; -chrII Steinmetz_2013 transcript 599004 599978 . - . gene_id "ST03398"; transcript_id "YBR185C"; -chrII Steinmetz_2013 transcript 601357 602152 . - . gene_id "ST03399"; transcript_id "SUT449"; -chrII Steinmetz_2013 transcript 603502 604182 . - . gene_id "ST03400"; transcript_id "YBR188C"; -chrII Steinmetz_2013 transcript 608750 609794 . - . gene_id "ST03401"; transcript_id "YBR193C"; -chrII Steinmetz_2013 transcript 610490 611928 . - . gene_id "ST03402"; transcript_id "YBR195C"; -chrII Steinmetz_2013 transcript 612072 613942 . - . gene_id "ST03403"; transcript_id "YBR196C"; -chrII Steinmetz_2013 transcript 614746 615896 . - . gene_id "ST03404"; transcript_id "YBR197C"; -chrII Steinmetz_2013 transcript 616043 618601 . - . gene_id "ST03405"; transcript_id "YBR198C"; -chrII Steinmetz_2013 transcript 624262 624760 . - . gene_id "ST03406"; transcript_id "YBR201C-A"; -chrII Steinmetz_2013 transcript 632021 633447 . - . gene_id "ST03407"; transcript_id "YBR204C"; -chrII Steinmetz_2013 transcript 653087 653526 . - . gene_id "ST03408"; transcript_id "XUT_2R-271"; -chrII Steinmetz_2013 transcript 655283 657630 . - . gene_id "ST03409"; transcript_id "YBR216C"; -chrII Steinmetz_2013 transcript 658577 662311 . - . gene_id "ST03410"; transcript_id "YBR218C"; -chrII Steinmetz_2013 transcript 664913 666456 . - . gene_id "ST03411"; transcript_id "YBR221C"; -chrII Steinmetz_2013 transcript 666606 668391 . - . gene_id "ST03412"; transcript_id "YBR222C"; -chrII Steinmetz_2013 transcript 668416 670320 . - . gene_id "ST03413"; transcript_id "YBR223C"; -chrII Steinmetz_2013 transcript 676226 679230 . - . gene_id "ST03414"; transcript_id "YBR229C"; -chrII Steinmetz_2013 transcript 679388 680076 . - . gene_id "ST03415"; transcript_id "YBR230C"; -chrII Steinmetz_2013 transcript 682140 683147 . - . gene_id "ST03416"; transcript_id "YBR231C"; -chrII Steinmetz_2013 transcript 685360 686638 . - . gene_id "ST03417"; transcript_id "YBR234C"; -chrII Steinmetz_2013 transcript 690232 691731 . - . gene_id "ST03418"; transcript_id "YBR236C"; -chrII Steinmetz_2013 transcript 694730 697386 . - . gene_id "ST03419"; transcript_id "YBR238C"; -chrII Steinmetz_2013 transcript 698243 700092 . - . gene_id "ST03420"; transcript_id "YBR239C"; -chrII Steinmetz_2013 transcript 702533 704084 . - . gene_id "ST03421"; transcript_id "YBR241C"; -chrII Steinmetz_2013 transcript 705257 706837 . - . gene_id "ST03422"; transcript_id "YBR243C"; -chrII Steinmetz_2013 transcript 712887 714476 . - . gene_id "ST03423"; transcript_id "YBR247C"; -chrII Steinmetz_2013 transcript 714727 716524 . - . gene_id "ST03424"; transcript_id "YBR248C"; -chrII Steinmetz_2013 transcript 716765 718084 . - . gene_id "ST03425"; transcript_id "YBR249C"; -chrII Steinmetz_2013 transcript 720657 721145 . - . gene_id "ST03426"; transcript_id "CUT458"; -chrII Steinmetz_2013 transcript 723593 724266 . - . gene_id "ST03427"; transcript_id "YBR254C"; -chrII Steinmetz_2013 transcript 726507 727124 . - . gene_id "ST03428"; transcript_id "YBR255C-A"; -chrII Steinmetz_2013 transcript 727322 728110 . - . gene_id "ST03429"; transcript_id "YBR256C"; -chrII Steinmetz_2013 transcript 729662 730195 . - . gene_id "ST03430"; transcript_id "YBR258C"; -chrII Steinmetz_2013 transcript 732507 734648 . - . gene_id "ST03431"; transcript_id "YBR260C"; -chrII Steinmetz_2013 transcript 734704 735567 . - . gene_id "ST03432"; transcript_id "YBR261C"; -chrII Steinmetz_2013 transcript 735621 736084 . - . gene_id "ST03433"; transcript_id "YBR262C"; -chrII Steinmetz_2013 transcript 737728 738394 . - . gene_id "ST03434"; transcript_id "YBR264C"; -chrII Steinmetz_2013 transcript 742004 742597 . - . gene_id "ST03435"; transcript_id "YBR269C"; -chrII Steinmetz_2013 transcript 742721 744670 . - . gene_id "ST03436"; transcript_id "YBR270C"; -chrII Steinmetz_2013 transcript 746113 747810 . - . gene_id "ST03437"; transcript_id "YBR272C"; -chrII Steinmetz_2013 transcript 747963 749402 . - . gene_id "ST03438"; transcript_id "YBR273C"; -chrII Steinmetz_2013 transcript 757550 760138 . - . gene_id "ST03439"; transcript_id "YBR276C"; -chrII Steinmetz_2013 transcript 762608 764720 . - . gene_id "ST03440"; transcript_id "YBR280C"; -chrII Steinmetz_2013 transcript 764840 767655 . - . gene_id "ST03441"; transcript_id "YBR281C"; -chrII Steinmetz_2013 transcript 768798 770559 . - . gene_id "ST03442"; transcript_id "YBR283C"; -chrII Steinmetz_2013 transcript 777922 779491 . - . gene_id "ST03443"; transcript_id "YBR288C"; -chrII Steinmetz_2013 transcript 783627 784608 . - . gene_id "ST03444"; transcript_id "YBR291C"; -chrII Steinmetz_2013 transcript 786224 786852 . - . gene_id "ST03445"; transcript_id "XUT_2R-342"; -chrII Steinmetz_2013 transcript 786395 786870 . - . gene_id "ST03446"; transcript_id "SUT451"; -chrII Steinmetz_2013 transcript 789078 792052 . - . gene_id "ST03447"; transcript_id "SUT452"; -chrII Steinmetz_2013 transcript 792093 792551 . - . gene_id "ST03448"; transcript_id "XUT_2R-344"; -chrII Steinmetz_2013 transcript 796558 798588 . - . gene_id "ST03449"; transcript_id "YBR296C"; -chrII Steinmetz_2013 transcript 799333 799962 . - . gene_id "ST03450"; transcript_id "SUT454"; -chrII Steinmetz_2013 transcript 802538 804872 . - . gene_id "ST03451"; transcript_id "YBR298C"; -chrII Steinmetz_2013 transcript 24010 24938 . + . gene_id "ST03452"; transcript_id "YBL102W"; -chrII Steinmetz_2013 transcript 28372 28686 . + . gene_id "ST03453"; transcript_id "YBL100W-C"; -chrII Steinmetz_2013 transcript 36733 38922 . + . gene_id "ST03454"; transcript_id "YBL099W"; -chrII Steinmetz_2013 transcript 40773 43265 . + . gene_id "ST03455"; transcript_id "YBL097W"; -chrII Steinmetz_2013 transcript 43261 44207 . + . gene_id "ST03456"; transcript_id "YBL095W"; -chrII Steinmetz_2013 transcript 45613 46517 . + . gene_id "ST03457"; transcript_id "YBL092W"; -chrII Steinmetz_2013 transcript 46774 47096 . + . gene_id "ST03458"; transcript_id "SUT005"; -chrII Steinmetz_2013 transcript 48818 49481 . + . gene_id "ST03459"; transcript_id "YBL090W"; -chrII Steinmetz_2013 transcript 49510 51016 . + . gene_id "ST03460"; transcript_id "YBL089W"; -chrII Steinmetz_2013 transcript 63674 66934 . + . gene_id "ST03461"; transcript_id "YBL085W"; -chrII Steinmetz_2013 transcript 71552 73109 . + . gene_id "ST03462"; transcript_id "YBL081W"; -chrII Steinmetz_2013 transcript 89943 90676 . + . gene_id "ST03463"; transcript_id "YBL071W-A"; -chrII Steinmetz_2013 transcript 92382 93483 . + . gene_id "ST03464"; transcript_id "YBL068W"; -chrII Steinmetz_2013 transcript 101886 105299 . + . gene_id "ST03465"; transcript_id "YBL063W"; -chrII Steinmetz_2013 transcript 107914 110033 . + . gene_id "ST03466"; transcript_id "YBL060W"; -chrII Steinmetz_2013 transcript 111409 112834 . + . gene_id "ST03467"; transcript_id "YBL058W"; -chrII Steinmetz_2013 transcript 113716 115564 . + . gene_id "ST03468"; transcript_id "YBL056W"; -chrII Steinmetz_2013 transcript 117474 119311 . + . gene_id "ST03469"; transcript_id "YBL054W"; -chrII Steinmetz_2013 transcript 125042 126186 . + . gene_id "ST03470"; transcript_id "YBL050W"; -chrII Steinmetz_2013 transcript 132424 133927 . + . gene_id "ST03471"; transcript_id "YBL046W"; -chrII Steinmetz_2013 transcript 136555 137655 . + . gene_id "ST03472"; transcript_id "YBL043W"; -chrII Steinmetz_2013 transcript 141212 142018 . + . gene_id "ST03473"; transcript_id "YBL041W"; -chrII Steinmetz_2013 transcript 143086 143707 . + . gene_id "ST03474"; transcript_id "YBL039W-B"; -chrII Steinmetz_2013 transcript 146124 146943 . + . gene_id "ST03475"; transcript_id "YBL038W"; -chrII Steinmetz_2013 transcript 147111 150395 . + . gene_id "ST03476"; transcript_id "YBL037W"; -chrII Steinmetz_2013 transcript 160092 161509 . + . gene_id "ST03477"; transcript_id "YBL032W"; -chrII Steinmetz_2013 transcript 161669 162874 . + . gene_id "ST03478"; transcript_id "YBL031W"; -chrII Steinmetz_2013 transcript 164455 164918 . + . gene_id "ST03479"; transcript_id "SUT006"; -chrII Steinmetz_2013 transcript 168392 169460 . + . gene_id "ST03480"; transcript_id "YBL027W"; -chrII Steinmetz_2013 transcript 170552 171164 . + . gene_id "ST03481"; transcript_id "YBL026W"; -chrII Steinmetz_2013 transcript 171423 172384 . + . gene_id "ST03482"; transcript_id "YBL025W"; -chrII Steinmetz_2013 transcript 172511 174713 . + . gene_id "ST03483"; transcript_id "YBL024W"; -chrII Steinmetz_2013 transcript 182319 184205 . + . gene_id "ST03484"; transcript_id "YBL020W"; -chrII Steinmetz_2013 transcript 184353 186027 . + . gene_id "ST03485"; transcript_id "YBL019W"; -chrII Steinmetz_2013 transcript 194037 195984 . + . gene_id "ST03486"; transcript_id "YBL015W"; -chrII Steinmetz_2013 transcript 196333 196698 . + . gene_id "ST03487"; transcript_id "SUT007"; -chrII Steinmetz_2013 transcript 203437 206022 . + . gene_id "ST03488"; transcript_id "YBL011W"; -chrII Steinmetz_2013 transcript 207160 209350 . + . gene_id "ST03489"; transcript_id "YBL009W"; -chrII Steinmetz_2013 transcript 217408 220685 . + . gene_id "ST03490"; transcript_id "YBL005W"; -chrII Steinmetz_2013 transcript 236469 237079 . + . gene_id "ST03491"; transcript_id "YBL002W"; -chrII Steinmetz_2013 transcript 238495 238964 . + . gene_id "ST03492"; transcript_id "SUT008"; -chrII Steinmetz_2013 transcript 238523 238953 . + . gene_id "ST03493"; transcript_id "XUT_2F-78"; -chrII Steinmetz_2013 transcript 242780 244357 . + . gene_id "ST03494"; transcript_id "YBR003W"; -chrII Steinmetz_2013 transcript 245817 246698 . + . gene_id "ST03495"; transcript_id "YBR005W"; -chrII Steinmetz_2013 transcript 246884 248649 . + . gene_id "ST03496"; transcript_id "YBR006W"; -chrII Steinmetz_2013 transcript 251149 252098 . + . gene_id "ST03497"; transcript_id "XUT_2F-87"; -chrII Steinmetz_2013 transcript 251553 252116 . + . gene_id "ST03498"; transcript_id "SUT010"; -chrII Steinmetz_2013 transcript 256303 256904 . + . gene_id "ST03499"; transcript_id "YBR010W"; -chrII Steinmetz_2013 transcript 258250 258831 . + . gene_id "ST03500"; transcript_id "XUT_2F-93"; -chrII Steinmetz_2013 transcript 270217 270840 . + . gene_id "ST03501"; transcript_id "YBR016W"; -chrII Steinmetz_2013 transcript 276762 278926 . + . gene_id "ST03502"; transcript_id "SUT013"; -chrII Steinmetz_2013 transcript 278963 280763 . + . gene_id "ST03503"; transcript_id "YBR020W"; -chrII Steinmetz_2013 transcript 281345 283471 . + . gene_id "ST03504"; transcript_id "YBR021W"; -chrII Steinmetz_2013 transcript 283676 284433 . + . gene_id "ST03505"; transcript_id "YBR022W"; -chrII Steinmetz_2013 transcript 288267 288828 . + . gene_id "ST03506"; transcript_id "XUT_2F-101"; -chrII Steinmetz_2013 transcript 289332 290352 . + . gene_id "ST03507"; transcript_id "YBR024W"; -chrII Steinmetz_2013 transcript 296286 296545 . + . gene_id "ST03508"; transcript_id "CUT010"; -chrII Steinmetz_2013 transcript 298235 300006 . + . gene_id "ST03509"; transcript_id "YBR030W"; -chrII Steinmetz_2013 transcript 300150 301342 . + . gene_id "ST03510"; transcript_id "YBR031W"; -chrII Steinmetz_2013 transcript 301921 304786 . + . gene_id "ST03511"; transcript_id "YBR033W"; -chrII Steinmetz_2013 transcript 306245 307022 . + . gene_id "ST03512"; transcript_id "XUT_2F-116"; -chrII Steinmetz_2013 transcript 306622 307031 . + . gene_id "ST03513"; transcript_id "CUT012"; -chrII Steinmetz_2013 transcript 311861 314975 . + . gene_id "ST03514"; transcript_id "YBR038W"; -chrII Steinmetz_2013 transcript 315488 316688 . + . gene_id "ST03515"; transcript_id "YBR039W"; -chrII Steinmetz_2013 transcript 318222 320417 . + . gene_id "ST03516"; transcript_id "YBR041W"; -chrII Steinmetz_2013 transcript 324444 325120 . + . gene_id "ST03517"; transcript_id "XUT_2F-125"; -chrII Steinmetz_2013 transcript 324486 325325 . + . gene_id "ST03518"; transcript_id "CUT014"; -chrII Steinmetz_2013 transcript 331813 332461 . + . gene_id "ST03519"; transcript_id "YBR047W"; -chrII Steinmetz_2013 transcript 332811 334027 . + . gene_id "ST03520"; transcript_id "YBR048W"; -chrII Steinmetz_2013 transcript 341473 342167 . + . gene_id "ST03521"; transcript_id "XUT_2F-136"; -chrII Steinmetz_2013 transcript 342781 344496 . + . gene_id "ST03522"; transcript_id "YBR054W"; -chrII Steinmetz_2013 transcript 347867 349428 . + . gene_id "ST03523"; transcript_id "YBR056W"; -chrII Steinmetz_2013 transcript 349779 350720 . + . gene_id "ST03524"; transcript_id "XUT_2F-141"; -chrII Steinmetz_2013 transcript 351228 351890 . + . gene_id "ST03525"; transcript_id "YBR056W-A"; -chrII Steinmetz_2013 transcript 362841 364711 . + . gene_id "ST03526"; transcript_id "SUT014"; -chrII Steinmetz_2013 transcript 365881 366658 . + . gene_id "ST03527"; transcript_id "CUT019"; -chrII Steinmetz_2013 transcript 370548 370868 . + . gene_id "ST03528"; transcript_id "SUT015"; -chrII Steinmetz_2013 transcript 371346 373724 . + . gene_id "ST03529"; transcript_id "SUT016"; -chrII Steinmetz_2013 transcript 371882 373724 . + . gene_id "ST03530"; transcript_id "XUT_2F-150"; -chrII Steinmetz_2013 transcript 376502 378640 . + . gene_id "ST03531"; transcript_id "XUT_2F-154"; -chrII Steinmetz_2013 transcript 380339 381321 . + . gene_id "ST03532"; transcript_id "YBR071W"; -chrII Steinmetz_2013 transcript 381956 382838 . + . gene_id "ST03533"; transcript_id "YBR072W"; -chrII Steinmetz_2013 transcript 386281 389278 . + . gene_id "ST03534"; transcript_id "YBR074W"; -chrII Steinmetz_2013 transcript 392947 395042 . + . gene_id "ST03535"; transcript_id "YBR078W"; -chrII Steinmetz_2013 transcript 407363 408070 . + . gene_id "ST03536"; transcript_id "XUT_2F-169"; -chrII Steinmetz_2013 transcript 408894 410704 . + . gene_id "ST03537"; transcript_id "YBR083W"; -chrII Steinmetz_2013 transcript 411040 414073 . + . gene_id "ST03538"; transcript_id "YBR084W"; -chrII Steinmetz_2013 transcript 415908 417072 . + . gene_id "ST03539"; transcript_id "YBR085W"; -chrII Steinmetz_2013 transcript 423754 424884 . + . gene_id "ST03540"; transcript_id "YBR087W"; -chrII Steinmetz_2013 transcript 429569 431645 . + . gene_id "ST03541"; transcript_id "CUT025"; -chrII Steinmetz_2013 transcript 431970 434300 . + . gene_id "ST03542"; transcript_id "YBR094W"; -chrII Steinmetz_2013 transcript 435960 436781 . + . gene_id "ST03543"; transcript_id "YBR096W"; -chrII Steinmetz_2013 transcript 441496 443699 . + . gene_id "ST03544"; transcript_id "YBR098W"; -chrII Steinmetz_2013 transcript 447578 449364 . + . gene_id "ST03545"; transcript_id "YBR103W"; -chrII Steinmetz_2013 transcript 449579 450716 . + . gene_id "ST03546"; transcript_id "YBR104W"; -chrII Steinmetz_2013 transcript 452625 453364 . + . gene_id "ST03547"; transcript_id "YBR106W"; -chrII Steinmetz_2013 transcript 453593 454765 . + . gene_id "ST03548"; transcript_id "SUT017"; -chrII Steinmetz_2013 transcript 454770 457846 . + . gene_id "ST03549"; transcript_id "YBR108W"; -chrII Steinmetz_2013 transcript 458837 460321 . + . gene_id "ST03550"; transcript_id "YBR110W"; -chrII Steinmetz_2013 transcript 462098 462746 . + . gene_id "ST03551"; transcript_id "YBR111W-A"; -chrII Steinmetz_2013 transcript 467160 469674 . + . gene_id "ST03552"; transcript_id "YBR114W"; -chrII Steinmetz_2013 transcript 474318 476966 . + . gene_id "ST03553"; transcript_id "SUT018"; -chrII Steinmetz_2013 transcript 477649 479137 . + . gene_id "ST03554"; transcript_id "YBR118W"; -chrII Steinmetz_2013 transcript 479290 480443 . + . gene_id "ST03555"; transcript_id "YBR119W"; -chrII Steinmetz_2013 transcript 493062 493806 . + . gene_id "ST03556"; transcript_id "XUT_2F-197"; -chrII Steinmetz_2013 transcript 497148 499352 . + . gene_id "ST03557"; transcript_id "YBR131W"; -chrII Steinmetz_2013 transcript 504760 505412 . + . gene_id "ST03558"; transcript_id "YBR135W"; -chrII Steinmetz_2013 transcript 512982 513718 . + . gene_id "ST03559"; transcript_id "YBR137W"; -chrII Steinmetz_2013 transcript 515659 517360 . + . gene_id "ST03560"; transcript_id "YBR139W"; -chrII Steinmetz_2013 transcript 527150 527742 . + . gene_id "ST03561"; transcript_id "YBR141W-A"; -chrII Steinmetz_2013 transcript 528259 530843 . + . gene_id "ST03562"; transcript_id "YBR142W"; -chrII Steinmetz_2013 transcript 532505 533330 . + . gene_id "ST03563"; transcript_id "SUT019"; -chrII Steinmetz_2013 transcript 533721 534918 . + . gene_id "ST03564"; transcript_id "YBR145W"; -chrII Steinmetz_2013 transcript 535197 536284 . + . gene_id "ST03565"; transcript_id "YBR146W"; -chrII Steinmetz_2013 transcript 536462 537481 . + . gene_id "ST03566"; transcript_id "YBR147W"; -chrII Steinmetz_2013 transcript 539949 541116 . + . gene_id "ST03567"; transcript_id "YBR149W"; -chrII Steinmetz_2013 transcript 544882 546108 . + . gene_id "ST03568"; transcript_id "YBR151W"; -chrII Steinmetz_2013 transcript 547386 548351 . + . gene_id "ST03569"; transcript_id "YBR153W"; -chrII Steinmetz_2013 transcript 549695 551006 . + . gene_id "ST03570"; transcript_id "YBR155W"; -chrII Steinmetz_2013 transcript 553481 556324 . + . gene_id "ST03571"; transcript_id "SUT020"; -chrII Steinmetz_2013 transcript 556286 558353 . + . gene_id "ST03572"; transcript_id "YBR158W"; -chrII Steinmetz_2013 transcript 558632 559894 . + . gene_id "ST03573"; transcript_id "YBR159W"; -chrII Steinmetz_2013 transcript 560000 561068 . + . gene_id "ST03574"; transcript_id "YBR160W"; -chrII Steinmetz_2013 transcript 561407 562876 . + . gene_id "ST03575"; transcript_id "YBR161W"; -chrII Steinmetz_2013 transcript 565214 565513 . + . gene_id "ST03576"; transcript_id "YBR162W-A"; -chrII Steinmetz_2013 transcript 565608 567533 . + . gene_id "ST03577"; transcript_id "YBR163W"; -chrII Steinmetz_2013 transcript 568760 569852 . + . gene_id "ST03578"; transcript_id "YBR165W"; -chrII Steinmetz_2013 transcript 572244 573786 . + . gene_id "ST03579"; transcript_id "YBR168W"; -chrII Steinmetz_2013 transcript 578338 579121 . + . gene_id "ST03580"; transcript_id "YBR171W"; -chrII Steinmetz_2013 transcript 582408 583458 . + . gene_id "ST03581"; transcript_id "YBR175W"; -chrII Steinmetz_2013 transcript 583623 584687 . + . gene_id "ST03582"; transcript_id "YBR176W"; -chrII Steinmetz_2013 transcript 585980 586573 . + . gene_id "ST03583"; transcript_id "YBR178W"; -chrII Steinmetz_2013 transcript 596018 597134 . + . gene_id "ST03584"; transcript_id "YBR183W"; -chrII Steinmetz_2013 transcript 597363 599092 . + . gene_id "ST03585"; transcript_id "YBR184W"; -chrII Steinmetz_2013 transcript 602505 603636 . + . gene_id "ST03586"; transcript_id "YBR187W"; -chrII Steinmetz_2013 transcript 604482 605573 . + . gene_id "ST03587"; transcript_id "YBR189W"; -chrII Steinmetz_2013 transcript 607444 609042 . + . gene_id "ST03588"; transcript_id "YBR192W"; -chrII Steinmetz_2013 transcript 609969 610618 . + . gene_id "ST03589"; transcript_id "YBR194W"; -chrII Steinmetz_2013 transcript 614448 614825 . + . gene_id "ST03590"; transcript_id "CUT030"; -chrII Steinmetz_2013 transcript 614471 616178 . + . gene_id "ST03591"; transcript_id "XUT_2F-242"; -chrII Steinmetz_2013 transcript 618810 620431 . + . gene_id "ST03592"; transcript_id "YBR199W"; -chrII Steinmetz_2013 transcript 620817 622749 . + . gene_id "ST03593"; transcript_id "YBR200W"; -chrII Steinmetz_2013 transcript 623440 624335 . + . gene_id "ST03594"; transcript_id "YBR201W"; -chrII Steinmetz_2013 transcript 625707 628486 . + . gene_id "ST03595"; transcript_id "YBR202W"; -chrII Steinmetz_2013 transcript 628956 632154 . + . gene_id "ST03596"; transcript_id "YBR203W"; -chrII Steinmetz_2013 transcript 635094 636660 . + . gene_id "ST03597"; transcript_id "YBR207W"; -chrII Steinmetz_2013 transcript 640140 642304 . + . gene_id "ST03598"; transcript_id "XUT_2F-252"; -chrII Steinmetz_2013 transcript 645512 645991 . + . gene_id "ST03599"; transcript_id "YBR210W"; -chrII Steinmetz_2013 transcript 647480 650110 . + . gene_id "ST03600"; transcript_id "YBR212W"; -chrII Steinmetz_2013 transcript 650298 651388 . + . gene_id "ST03601"; transcript_id "YBR213W"; -chrII Steinmetz_2013 transcript 651336 653191 . + . gene_id "ST03602"; transcript_id "YBR214W"; -chrII Steinmetz_2013 transcript 653319 655425 . + . gene_id "ST03603"; transcript_id "YBR215W"; -chrII Steinmetz_2013 transcript 657768 658683 . + . gene_id "ST03604"; transcript_id "YBR217W"; -chrII Steinmetz_2013 transcript 675313 676355 . + . gene_id "ST03605"; transcript_id "YBR228W"; -chrII Steinmetz_2013 transcript 680314 680694 . + . gene_id "ST03606"; transcript_id "YBR230W-A"; -chrII Steinmetz_2013 transcript 683349 684819 . + . gene_id "ST03607"; transcript_id "YBR233W"; -chrII Steinmetz_2013 transcript 684938 685456 . + . gene_id "ST03608"; transcript_id "YBR233W-A"; -chrII Steinmetz_2013 transcript 686820 690354 . + . gene_id "ST03609"; transcript_id "YBR235W"; -chrII Steinmetz_2013 transcript 691913 694611 . + . gene_id "ST03610"; transcript_id "YBR237W"; -chrII Steinmetz_2013 transcript 697842 698335 . + . gene_id "ST03611"; transcript_id "SUT021"; -chrII Steinmetz_2013 transcript 697906 698335 . + . gene_id "ST03612"; transcript_id "XUT_2F-282"; -chrII Steinmetz_2013 transcript 704530 705455 . + . gene_id "ST03613"; transcript_id "YBR242W"; -chrII Steinmetz_2013 transcript 707492 708203 . + . gene_id "ST03614"; transcript_id "YBR244W"; -chrII Steinmetz_2013 transcript 711548 712894 . + . gene_id "ST03615"; transcript_id "YBR246W"; -chrII Steinmetz_2013 transcript 721354 722394 . + . gene_id "ST03616"; transcript_id "YBR251W"; -chrII Steinmetz_2013 transcript 722593 723127 . + . gene_id "ST03617"; transcript_id "YBR252W"; -chrII Steinmetz_2013 transcript 723209 723663 . + . gene_id "ST03618"; transcript_id "YBR253W"; -chrII Steinmetz_2013 transcript 724420 726683 . + . gene_id "ST03619"; transcript_id "YBR255W"; -chrII Steinmetz_2013 transcript 728831 729745 . + . gene_id "ST03620"; transcript_id "YBR257W"; -chrII Steinmetz_2013 transcript 730341 732521 . + . gene_id "ST03621"; transcript_id "YBR259W"; -chrII Steinmetz_2013 transcript 736240 737789 . + . gene_id "ST03622"; transcript_id "YBR263W"; -chrII Steinmetz_2013 transcript 738559 739677 . + . gene_id "ST03623"; transcript_id "YBR265W"; -chrII Steinmetz_2013 transcript 739824 741142 . + . gene_id "ST03624"; transcript_id "YBR267W"; -chrII Steinmetz_2013 transcript 741281 741713 . + . gene_id "ST03625"; transcript_id "YBR268W"; -chrII Steinmetz_2013 transcript 744826 746209 . + . gene_id "ST03626"; transcript_id "YBR271W"; -chrII Steinmetz_2013 transcript 749544 751216 . + . gene_id "ST03627"; transcript_id "YBR274W"; -chrII Steinmetz_2013 transcript 760269 760991 . + . gene_id "ST03628"; transcript_id "YBR278W"; -chrII Steinmetz_2013 transcript 761212 762741 . + . gene_id "ST03629"; transcript_id "YBR279W"; -chrII Steinmetz_2013 transcript 768202 768768 . + . gene_id "ST03630"; transcript_id "YBR282W"; -chrII Steinmetz_2013 transcript 773771 774497 . + . gene_id "ST03631"; transcript_id "YBR285W"; -chrII Steinmetz_2013 transcript 774670 776385 . + . gene_id "ST03632"; transcript_id "YBR286W"; -chrII Steinmetz_2013 transcript 776538 777965 . + . gene_id "ST03633"; transcript_id "YBR287W"; -chrII Steinmetz_2013 transcript 779655 782436 . + . gene_id "ST03634"; transcript_id "YBR289W"; -chrII Steinmetz_2013 transcript 782561 783659 . + . gene_id "ST03635"; transcript_id "YBR290W"; -chrII Steinmetz_2013 transcript 785429 786389 . + . gene_id "ST03636"; transcript_id "SUT023"; -chrII Steinmetz_2013 transcript 786653 788482 . + . gene_id "ST03637"; transcript_id "YBR293W"; -chrII Steinmetz_2013 transcript 792833 796520 . + . gene_id "ST03638"; transcript_id "YBR295W"; -chrII Steinmetz_2013 transcript 799246 800431 . + . gene_id "ST03639"; transcript_id "SUT024"; -chrII Steinmetz_2013 transcript 800484 802171 . + . gene_id "ST03640"; transcript_id "YBR297W"; -chrII Steinmetz_2013 transcript 805177 807224 . + . gene_id "ST03641"; transcript_id "YBR299W"; -chrII Steinmetz_2013 transcript 807363 808374 . + . gene_id "ST03642"; transcript_id "XUT_2F-340"; -chrIII Steinmetz_2013 transcript 15704 16899 . - . gene_id "ST03643"; transcript_id "YCL064C"; -chrIII Steinmetz_2013 transcript 18649 22172 . - . gene_id "ST03644"; transcript_id "YCL061C"; -chrIII Steinmetz_2013 transcript 22323 23404 . - . gene_id "ST03645"; transcript_id "YCL059C"; -chrIII Steinmetz_2013 transcript 24003 24351 . - . gene_id "ST03646"; transcript_id "YCL057C-A"; -chrIII Steinmetz_2013 transcript 26910 27361 . - . gene_id "ST03647"; transcript_id "YCL056C"; -chrIII Steinmetz_2013 transcript 33973 35433 . - . gene_id "ST03648"; transcript_id "YCL052C"; -chrIII Steinmetz_2013 transcript 37722 38863 . - . gene_id "ST03649"; transcript_id "YCL050C"; -chrIII Steinmetz_2013 transcript 39648 40779 . - . gene_id "ST03650"; transcript_id "YCL049C"; -chrIII Steinmetz_2013 transcript 43591 44440 . - . gene_id "ST03651"; transcript_id "YCL047C"; -chrIII Steinmetz_2013 transcript 44562 46945 . - . gene_id "ST03652"; transcript_id "YCL045C"; -chrIII Steinmetz_2013 transcript 46942 48441 . - . gene_id "ST03653"; transcript_id "YCL044C"; -chrIII Steinmetz_2013 transcript 54863 56583 . - . gene_id "ST03654"; transcript_id "YCL038C"; -chrIII Steinmetz_2013 transcript 56797 58745 . - . gene_id "ST03655"; transcript_id "YCL037C"; -chrIII Steinmetz_2013 transcript 60747 61195 . - . gene_id "ST03656"; transcript_id "YCL035C"; -chrIII Steinmetz_2013 transcript 62701 63293 . - . gene_id "ST03657"; transcript_id "YCL033C"; -chrIII Steinmetz_2013 transcript 64573 65601 . - . gene_id "ST03658"; transcript_id "YCL031C"; -chrIII Steinmetz_2013 transcript 65849 68393 . - . gene_id "ST03659"; transcript_id "YCL030C"; -chrIII Steinmetz_2013 transcript 68353 69971 . - . gene_id "ST03660"; transcript_id "YCL029C"; -chrIII Steinmetz_2013 transcript 73343 74021 . - . gene_id "ST03661"; transcript_id "YCL026C-B"; -chrIII Steinmetz_2013 transcript 74490 75362 . - . gene_id "ST03662"; transcript_id "YCL026C-A"; -chrIII Steinmetz_2013 transcript 75936 77945 . - . gene_id "ST03663"; transcript_id "YCL025C"; -chrIII Steinmetz_2013 transcript 92636 94364 . - . gene_id "ST03664"; transcript_id "YCL017C"; -chrIII Steinmetz_2013 transcript 94484 95792 . - . gene_id "ST03665"; transcript_id "YCL016C"; -chrIII Steinmetz_2013 transcript 101190 101822 . - . gene_id "ST03666"; transcript_id "YCL012C"; -chrIII Steinmetz_2013 transcript 101965 103386 . - . gene_id "ST03667"; transcript_id "YCL011C"; -chrIII Steinmetz_2013 transcript 103525 104370 . - . gene_id "ST03668"; transcript_id "YCL010C"; -chrIII Steinmetz_2013 transcript 104471 105563 . - . gene_id "ST03669"; transcript_id "YCL009C"; -chrIII Steinmetz_2013 transcript 105564 106857 . - . gene_id "ST03670"; transcript_id "YCL008C"; -chrIII Steinmetz_2013 transcript 110655 111700 . - . gene_id "ST03671"; transcript_id "YCL002C"; -chrIII Steinmetz_2013 transcript 113129 114243 . - . gene_id "ST03672"; transcript_id "SUT455"; -chrIII Steinmetz_2013 transcript 115358 117073 . - . gene_id "ST03673"; transcript_id "SUT456"; -chrIII Steinmetz_2013 transcript 117315 118403 . - . gene_id "ST03674"; transcript_id "YCR002C"; -chrIII Steinmetz_2013 transcript 119390 120356 . - . gene_id "ST03675"; transcript_id "YCR004C"; -chrIII Steinmetz_2013 transcript 120841 122388 . - . gene_id "ST03676"; transcript_id "YCR005C"; -chrIII Steinmetz_2013 transcript 125936 127390 . - . gene_id "ST03677"; transcript_id "YCR007C"; -chrIII Steinmetz_2013 transcript 130066 130383 . - . gene_id "ST03678"; transcript_id "CUT464"; -chrIII Steinmetz_2013 transcript 130643 131598 . - . gene_id "ST03679"; transcript_id "YCR009C"; -chrIII Steinmetz_2013 transcript 132091 133236 . - . gene_id "ST03680"; transcript_id "YCR010C"; -chrIII Steinmetz_2013 transcript 133667 137005 . - . gene_id "ST03681"; transcript_id "YCR011C"; -chrIII Steinmetz_2013 transcript 141136 142190 . - . gene_id "ST03682"; transcript_id "YCR015C"; -chrIII Steinmetz_2013 transcript 144583 147663 . - . gene_id "ST03683"; transcript_id "YCR017C"; -chrIII Steinmetz_2013 transcript 152211 152573 . - . gene_id "ST03684"; transcript_id "XUT_3R-67"; -chrIII Steinmetz_2013 transcript 154667 155104 . - . gene_id "ST03685"; transcript_id "YCR020C-A"; -chrIII Steinmetz_2013 transcript 155930 157220 . - . gene_id "ST03686"; transcript_id "YCR021C"; -chrIII Steinmetz_2013 transcript 157141 158029 . - . gene_id "ST03687"; transcript_id "YCR022C"; -chrIII Steinmetz_2013 transcript 158297 160450 . - . gene_id "ST03688"; transcript_id "YCR023C"; -chrIII Steinmetz_2013 transcript 160602 162241 . - . gene_id "ST03689"; transcript_id "YCR024C"; -chrIII Steinmetz_2013 transcript 162409 162876 . - . gene_id "ST03690"; transcript_id "YCR024C-B"; -chrIII Steinmetz_2013 transcript 163326 163990 . - . gene_id "ST03691"; transcript_id "YCR025C"; -chrIII Steinmetz_2013 transcript 163896 166407 . - . gene_id "ST03692"; transcript_id "YCR026C"; -chrIII Steinmetz_2013 transcript 166732 168174 . - . gene_id "ST03693"; transcript_id "YCR027C"; -chrIII Steinmetz_2013 transcript 170164 172542 . - . gene_id "ST03694"; transcript_id "YCR028C"; -chrIII Steinmetz_2013 transcript 172758 173501 . - . gene_id "ST03695"; transcript_id "YCR028C-A"; -chrIII Steinmetz_2013 transcript 173653 176523 . - . gene_id "ST03696"; transcript_id "YCR030C"; -chrIII Steinmetz_2013 transcript 176581 176927 . - . gene_id "ST03697"; transcript_id "SUT457"; -chrIII Steinmetz_2013 transcript 177399 178241 . - . gene_id "ST03698"; transcript_id "YCR031C"; -chrIII Steinmetz_2013 transcript 191689 193036 . - . gene_id "ST03699"; transcript_id "YCR035C"; -chrIII Steinmetz_2013 transcript 194317 197219 . - . gene_id "ST03700"; transcript_id "YCR037C"; -chrIII Steinmetz_2013 transcript 206095 206677 . - . gene_id "ST03701"; transcript_id "YCR043C"; -chrIII Steinmetz_2013 transcript 206790 207957 . - . gene_id "ST03702"; transcript_id "YCR044C"; -chrIII Steinmetz_2013 transcript 208073 209772 . - . gene_id "ST03703"; transcript_id "YCR045C"; -chrIII Steinmetz_2013 transcript 209810 210429 . - . gene_id "ST03704"; transcript_id "YCR046C"; -chrIII Steinmetz_2013 transcript 210517 211611 . - . gene_id "ST03705"; transcript_id "YCR047C"; -chrIII Steinmetz_2013 transcript 218196 220184 . - . gene_id "ST03706"; transcript_id "YCR054C"; -chrIII Steinmetz_2013 transcript 220344 223290 . - . gene_id "ST03707"; transcript_id "YCR057C"; -chrIII Steinmetz_2013 transcript 223273 224244 . - . gene_id "ST03708"; transcript_id "YCR059C"; -chrIII Steinmetz_2013 transcript 225193 227723 . - . gene_id "ST03709"; transcript_id "SUT458"; -chrIII Steinmetz_2013 transcript 228091 228507 . - . gene_id "ST03710"; transcript_id "YCR064C"; -chrIII Steinmetz_2013 transcript 233049 236441 . - . gene_id "ST03711"; transcript_id "YCR067C"; -chrIII Steinmetz_2013 transcript 237964 238643 . - . gene_id "ST03712"; transcript_id "CUT467"; -chrIII Steinmetz_2013 transcript 240024 240580 . - . gene_id "ST03713"; transcript_id "YCR071C"; -chrIII Steinmetz_2013 transcript 240701 242378 . - . gene_id "ST03714"; transcript_id "YCR072C"; -chrIII Steinmetz_2013 transcript 242516 246648 . - . gene_id "ST03715"; transcript_id "YCR073C"; -chrIII Steinmetz_2013 transcript 247889 248825 . - . gene_id "ST03716"; transcript_id "YCR075C"; -chrIII Steinmetz_2013 transcript 249188 250062 . - . gene_id "ST03717"; transcript_id "YCR076C"; -chrIII Steinmetz_2013 transcript 250100 252670 . - . gene_id "ST03718"; transcript_id "YCR077C"; -chrIII Steinmetz_2013 transcript 253131 254217 . - . gene_id "ST03719"; transcript_id "XUT_3R-119"; -chrIII Steinmetz_2013 transcript 260157 262677 . - . gene_id "ST03720"; transcript_id "YCR084C"; -chrIII Steinmetz_2013 transcript 263943 264503 . - . gene_id "ST03721"; transcript_id "YCR087C-A"; -chrIII Steinmetz_2013 transcript 272239 272900 . - . gene_id "ST03722"; transcript_id "YCR090C"; -chrIII Steinmetz_2013 transcript 276558 279856 . - . gene_id "ST03723"; transcript_id "YCR092C"; -chrIII Steinmetz_2013 transcript 288114 289296 . - . gene_id "ST03724"; transcript_id "YCR095C"; -chrIII Steinmetz_2013 transcript 296791 298664 . - . gene_id "ST03725"; transcript_id "YCR098C"; -chrIII Steinmetz_2013 transcript 304090 305537 . - . gene_id "ST03726"; transcript_id "YCR102C"; -chrIII Steinmetz_2013 transcript 308225 309799 . - . gene_id "ST03727"; transcript_id "SUT459"; -chrIII Steinmetz_2013 transcript 17250 18714 . + . gene_id "ST03728"; transcript_id "YCL063W"; -chrIII Steinmetz_2013 transcript 23562 23990 . + . gene_id "ST03729"; transcript_id "YCL058W-A"; -chrIII Steinmetz_2013 transcript 24760 27012 . + . gene_id "ST03730"; transcript_id "YCL057W"; -chrIII Steinmetz_2013 transcript 27893 29115 . + . gene_id "ST03731"; transcript_id "YCL055W"; -chrIII Steinmetz_2013 transcript 29670 30507 . + . gene_id "ST03732"; transcript_id "XUT_3F-5"; -chrIII Steinmetz_2013 transcript 31432 34078 . + . gene_id "ST03733"; transcript_id "YCL054W"; -chrIII Steinmetz_2013 transcript 35585 37733 . + . gene_id "ST03734"; transcript_id "YCL051W"; -chrIII Steinmetz_2013 transcript 39034 39384 . + . gene_id "ST03735"; transcript_id "CUT040"; -chrIII Steinmetz_2013 transcript 39648 40854 . + . gene_id "ST03736"; transcript_id "XUT_3F-11"; -chrIII Steinmetz_2013 transcript 40886 41390 . + . gene_id "ST03737"; transcript_id "XUT_3F-12"; -chrIII Steinmetz_2013 transcript 52625 54924 . + . gene_id "ST03738"; transcript_id "YCL039W"; -chrIII Steinmetz_2013 transcript 59026 60822 . + . gene_id "ST03739"; transcript_id "YCL036W"; -chrIII Steinmetz_2013 transcript 61602 62794 . + . gene_id "ST03740"; transcript_id "YCL034W"; -chrIII Steinmetz_2013 transcript 63364 64581 . + . gene_id "ST03741"; transcript_id "YCL032W"; -chrIII Steinmetz_2013 transcript 68902 69342 . + . gene_id "ST03742"; transcript_id "CUT041"; -chrIII Steinmetz_2013 transcript 70118 71496 . + . gene_id "ST03743"; transcript_id "YCL028W"; -chrIII Steinmetz_2013 transcript 71658 73446 . + . gene_id "ST03744"; transcript_id "YCL027W"; -chrIII Steinmetz_2013 transcript 74640 75355 . + . gene_id "ST03745"; transcript_id "XUT_3F-31"; -chrIII Steinmetz_2013 transcript 77194 78057 . + . gene_id "ST03746"; transcript_id "XUT_3F-33"; -chrIII Steinmetz_2013 transcript 83530 84097 . + . gene_id "ST03747"; transcript_id "YCL021W-A"; -chrIII Steinmetz_2013 transcript 91296 92494 . + . gene_id "ST03748"; transcript_id "YCL018W"; -chrIII Steinmetz_2013 transcript 106998 107519 . + . gene_id "ST03749"; transcript_id "YCL005W-A"; -chrIII Steinmetz_2013 transcript 105828 106242 . + . gene_id "ST03750"; transcript_id "CUT042"; -chrIII Steinmetz_2013 transcript 107916 108900 . + . gene_id "ST03751"; transcript_id "YCL005W"; -chrIII Steinmetz_2013 transcript 109027 110747 . + . gene_id "ST03752"; transcript_id "YCL004W"; -chrIII Steinmetz_2013 transcript 111890 112563 . + . gene_id "ST03753"; transcript_id "YCL001W"; -chrIII Steinmetz_2013 transcript 118598 119276 . + . gene_id "ST03754"; transcript_id "YCR003W"; -chrIII Steinmetz_2013 transcript 125230 125966 . + . gene_id "ST03755"; transcript_id "SUT031"; -chrIII Steinmetz_2013 transcript 128027 130550 . + . gene_id "ST03756"; transcript_id "YCR008W"; -chrIII Steinmetz_2013 transcript 137706 139154 . + . gene_id "ST03757"; transcript_id "YCR012W"; -chrIII Steinmetz_2013 transcript 143608 144675 . + . gene_id "ST03758"; transcript_id "YCR016W"; -chrIII Steinmetz_2013 transcript 152689 154042 . + . gene_id "ST03759"; transcript_id "YCR019W"; -chrIII Steinmetz_2013 transcript 155288 156042 . + . gene_id "ST03760"; transcript_id "YCR020W-B"; -chrIII Steinmetz_2013 transcript 156330 157208 . + . gene_id "ST03761"; transcript_id "XUT_3F-70"; -chrIII Steinmetz_2013 transcript 157473 158371 . + . gene_id "ST03762"; transcript_id "XUT_3F-71"; -chrIII Steinmetz_2013 transcript 190566 191803 . + . gene_id "ST03763"; transcript_id "YCR034W"; -chrIII Steinmetz_2013 transcript 193293 194381 . + . gene_id "ST03764"; transcript_id "YCR036W"; -chrIII Steinmetz_2013 transcript 202754 204401 . + . gene_id "ST03765"; transcript_id "SUT034"; -chrIII Steinmetz_2013 transcript 206820 207917 . + . gene_id "ST03766"; transcript_id "SUT036"; -chrIII Steinmetz_2013 transcript 208134 209788 . + . gene_id "ST03767"; transcript_id "YCR045W-A"; -chrIII Steinmetz_2013 transcript 210339 210746 . + . gene_id "ST03768"; transcript_id "XUT_3F-99"; -chrIII Steinmetz_2013 transcript 211875 213976 . + . gene_id "ST03769"; transcript_id "YCR048W"; -chrIII Steinmetz_2013 transcript 214047 214871 . + . gene_id "ST03770"; transcript_id "YCR051W"; -chrIII Steinmetz_2013 transcript 214961 216655 . + . gene_id "ST03771"; transcript_id "YCR052W"; -chrIII Steinmetz_2013 transcript 216656 218318 . + . gene_id "ST03772"; transcript_id "YCR053W"; -chrIII Steinmetz_2013 transcript 225538 227816 . + . gene_id "ST03773"; transcript_id "YCR061W"; -chrIII Steinmetz_2013 transcript 228296 229272 . + . gene_id "ST03774"; transcript_id "YCR063W"; -chrIII Steinmetz_2013 transcript 229127 231330 . + . gene_id "ST03775"; transcript_id "YCR065W"; -chrIII Steinmetz_2013 transcript 231450 233128 . + . gene_id "ST03776"; transcript_id "YCR066W"; -chrIII Steinmetz_2013 transcript 237060 238795 . + . gene_id "ST03777"; transcript_id "YCR068W"; -chrIII Steinmetz_2013 transcript 238908 240132 . + . gene_id "ST03778"; transcript_id "YCR069W"; -chrIII Steinmetz_2013 transcript 242607 244144 . + . gene_id "ST03779"; transcript_id "SUT038"; -chrIII Steinmetz_2013 transcript 246945 248034 . + . gene_id "ST03780"; transcript_id "YCR073W-A"; -chrIII Steinmetz_2013 transcript 248961 249282 . + . gene_id "ST03781"; transcript_id "YCR075W-A"; -chrIII Steinmetz_2013 transcript 252818 254299 . + . gene_id "ST03782"; transcript_id "YCR079W"; -chrIII Steinmetz_2013 transcript 258853 259376 . + . gene_id "ST03783"; transcript_id "YCR082W"; -chrIII Steinmetz_2013 transcript 259543 260084 . + . gene_id "ST03784"; transcript_id "YCR083W"; -chrIII Steinmetz_2013 transcript 265022 266979 . + . gene_id "ST03785"; transcript_id "YCR088W"; -chrIII Steinmetz_2013 transcript 274345 276678 . + . gene_id "ST03786"; transcript_id "YCR091W"; -chrIII Steinmetz_2013 transcript 286699 288211 . + . gene_id "ST03787"; transcript_id "YCR094W"; -chrIII Steinmetz_2013 transcript 289476 291204 . + . gene_id "ST03788"; transcript_id "YCR095W-A"; -chrIII Steinmetz_2013 transcript 293823 294338 . + . gene_id "ST03789"; transcript_id "YCR097W"; -chrIII Steinmetz_2013 transcript 298690 299581 . + . gene_id "ST03790"; transcript_id "SUT040"; -chrIII Steinmetz_2013 transcript 310944 313816 . + . gene_id "ST03791"; transcript_id "YCR106W"; -chrIV Steinmetz_2013 transcript 17467 19288 . - . gene_id "ST03792"; transcript_id "YDL243C"; -chrIV Steinmetz_2013 transcript 28919 30482 . - . gene_id "ST03793"; transcript_id "YDL238C"; -chrIV Steinmetz_2013 transcript 33272 34032 . - . gene_id "ST03794"; transcript_id "YDL235C"; -chrIV Steinmetz_2013 transcript 34179 36620 . - . gene_id "ST03795"; transcript_id "YDL234C"; -chrIV Steinmetz_2013 transcript 50862 52196 . - . gene_id "ST03796"; transcript_id "YDL226C"; -chrIV Steinmetz_2013 transcript 54251 56710 . - . gene_id "ST03797"; transcript_id "YDL224C"; -chrIV Steinmetz_2013 transcript 61888 65038 . - . gene_id "ST03798"; transcript_id "YDL220C"; -chrIV Steinmetz_2013 transcript 65933 67791 . - . gene_id "ST03799"; transcript_id "XUT_4R-27"; -chrIV Steinmetz_2013 transcript 67880 68766 . - . gene_id "ST03800"; transcript_id "YDL217C"; -chrIV Steinmetz_2013 transcript 68871 70338 . - . gene_id "ST03801"; transcript_id "YDL216C"; -chrIV Steinmetz_2013 transcript 70486 73964 . - . gene_id "ST03802"; transcript_id "YDL215C"; -chrIV Steinmetz_2013 transcript 74335 76712 . - . gene_id "ST03803"; transcript_id "YDL214C"; -chrIV Steinmetz_2013 transcript 77216 77975 . - . gene_id "ST03804"; transcript_id "YDL213C"; -chrIV Steinmetz_2013 transcript 79125 80481 . - . gene_id "ST03805"; transcript_id "YDL211C"; -chrIV Steinmetz_2013 transcript 86011 87248 . - . gene_id "ST03806"; transcript_id "YDL209C"; -chrIV Steinmetz_2013 transcript 92596 93929 . - . gene_id "ST03807"; transcript_id "YDL205C"; -chrIV Steinmetz_2013 transcript 95903 98152 . - . gene_id "ST03808"; transcript_id "YDL203C"; -chrIV Steinmetz_2013 transcript 100429 101103 . - . gene_id "ST03809"; transcript_id "YDL200C"; -chrIV Steinmetz_2013 transcript 101206 103403 . - . gene_id "ST03810"; transcript_id "YDL199C"; -chrIV Steinmetz_2013 transcript 103527 104579 . - . gene_id "ST03811"; transcript_id "YDL198C"; -chrIV Steinmetz_2013 transcript 104823 106508 . - . gene_id "ST03812"; transcript_id "YDL197C"; -chrIV Steinmetz_2013 transcript 118499 121785 . - . gene_id "ST03813"; transcript_id "YDL190C"; -chrIV Steinmetz_2013 transcript 123711 125180 . - . gene_id "ST03814"; transcript_id "YDL188C"; -chrIV Steinmetz_2013 transcript 125358 126465 . - . gene_id "ST03815"; transcript_id "YDL187C"; -chrIV Steinmetz_2013 transcript 130197 130506 . - . gene_id "ST03816"; transcript_id "YDL184C"; -chrIV Steinmetz_2013 transcript 130815 131907 . - . gene_id "ST03817"; transcript_id "YDL183C"; -chrIV Steinmetz_2013 transcript 134739 135558 . - . gene_id "ST03818"; transcript_id "SUT460"; -chrIV Steinmetz_2013 transcript 138178 139266 . - . gene_id "ST03819"; transcript_id "CUT476"; -chrIV Steinmetz_2013 transcript 141113 141773 . - . gene_id "ST03820"; transcript_id "YDL177C"; -chrIV Steinmetz_2013 transcript 144266 145545 . - . gene_id "ST03821"; transcript_id "YDL175C"; -chrIV Steinmetz_2013 transcript 145734 147617 . - . gene_id "ST03822"; transcript_id "YDL174C"; -chrIV Steinmetz_2013 transcript 158003 158774 . - . gene_id "ST03823"; transcript_id "YDL169C"; -chrIV Steinmetz_2013 transcript 160816 163210 . - . gene_id "ST03824"; transcript_id "YDL167C"; -chrIV Steinmetz_2013 transcript 163374 164096 . - . gene_id "ST03825"; transcript_id "YDL166C"; -chrIV Steinmetz_2013 transcript 164825 167305 . - . gene_id "ST03826"; transcript_id "YDL164C"; -chrIV Steinmetz_2013 transcript 169169 169636 . - . gene_id "ST03827"; transcript_id "YDL160C-A"; -chrIV Steinmetz_2013 transcript 169968 172214 . - . gene_id "ST03828"; transcript_id "YDL160C"; -chrIV Steinmetz_2013 transcript 174175 174623 . - . gene_id "ST03829"; transcript_id "YDL157C"; -chrIV Steinmetz_2013 transcript 181045 183044 . - . gene_id "ST03830"; transcript_id "YDL153C"; -chrIV Steinmetz_2013 transcript 187865 190616 . - . gene_id "ST03831"; transcript_id "YDL148C"; -chrIV Steinmetz_2013 transcript 194395 198431 . - . gene_id "ST03832"; transcript_id "YDL145C"; -chrIV Steinmetz_2013 transcript 198570 199749 . - . gene_id "ST03833"; transcript_id "YDL144C"; -chrIV Steinmetz_2013 transcript 201592 202633 . - . gene_id "ST03834"; transcript_id "YDL142C"; -chrIV Steinmetz_2013 transcript 211254 212097 . - . gene_id "ST03835"; transcript_id "YDL139C"; -chrIV Steinmetz_2013 transcript 215349 215717 . - . gene_id "ST03836"; transcript_id "CUT479"; -chrIV Steinmetz_2013 transcript 218402 219333 . - . gene_id "ST03837"; transcript_id "YDL135C"; -chrIV Steinmetz_2013 transcript 219580 221242 . - . gene_id "ST03838"; transcript_id "YDL134C"; -chrIV Steinmetz_2013 transcript 221523 221819 . - . gene_id "ST03839"; transcript_id "YDL133C-A"; -chrIV Steinmetz_2013 transcript 232244 234119 . - . gene_id "ST03840"; transcript_id "SUT461"; -chrIV Steinmetz_2013 transcript 232244 233810 . - . gene_id "ST03841"; transcript_id "XUT_4R-92"; -chrIV Steinmetz_2013 transcript 234289 235951 . - . gene_id "ST03842"; transcript_id "XUT_4R-94"; -chrIV Steinmetz_2013 transcript 236081 238708 . - . gene_id "ST03843"; transcript_id "YDL126C"; -chrIV Steinmetz_2013 transcript 238902 239607 . - . gene_id "ST03844"; transcript_id "YDL125C"; -chrIV Steinmetz_2013 transcript 244964 245593 . - . gene_id "ST03845"; transcript_id "YDL121C"; -chrIV Steinmetz_2013 transcript 246533 247664 . - . gene_id "ST03846"; transcript_id "YDL119C"; -chrIV Steinmetz_2013 transcript 247727 248022 . - . gene_id "ST03847"; transcript_id "CUT481"; -chrIV Steinmetz_2013 transcript 253903 255168 . - . gene_id "ST03848"; transcript_id "YDL115C"; -chrIV Steinmetz_2013 transcript 256513 258618 . - . gene_id "ST03849"; transcript_id "YDL113C"; -chrIV Steinmetz_2013 transcript 263250 264171 . - . gene_id "ST03850"; transcript_id "YDL111C"; -chrIV Steinmetz_2013 transcript 264316 265021 . - . gene_id "ST03851"; transcript_id "YDL110C"; -chrIV Steinmetz_2013 transcript 269975 271953 . - . gene_id "ST03852"; transcript_id "YDL106C"; -chrIV Steinmetz_2013 transcript 273569 274895 . - . gene_id "ST03853"; transcript_id "YDL104C"; -chrIV Steinmetz_2013 transcript 275055 276654 . - . gene_id "ST03854"; transcript_id "YDL103C"; -chrIV Steinmetz_2013 transcript 280179 281861 . - . gene_id "ST03855"; transcript_id "YDL101C"; -chrIV Steinmetz_2013 transcript 282031 283212 . - . gene_id "ST03856"; transcript_id "YDL100C"; -chrIV Steinmetz_2013 transcript 284443 285175 . - . gene_id "ST03857"; transcript_id "YDL098C"; -chrIV Steinmetz_2013 transcript 285293 286740 . - . gene_id "ST03858"; transcript_id "YDL097C"; -chrIV Steinmetz_2013 transcript 289458 292193 . - . gene_id "ST03859"; transcript_id "YDL094C"; -chrIV Steinmetz_2013 transcript 292336 292792 . - . gene_id "ST03860"; transcript_id "XUT_4R-120"; -chrIV Steinmetz_2013 transcript 293290 294847 . - . gene_id "ST03861"; transcript_id "YDL091C"; -chrIV Steinmetz_2013 transcript 294903 296337 . - . gene_id "ST03862"; transcript_id "YDL090C"; -chrIV Steinmetz_2013 transcript 298263 300131 . - . gene_id "ST03863"; transcript_id "YDL088C"; -chrIV Steinmetz_2013 transcript 300054 301012 . - . gene_id "ST03864"; transcript_id "YDL087C"; -chrIV Steinmetz_2013 transcript 301399 302248 . - . gene_id "ST03865"; transcript_id "YDL086C-A"; -chrIV Steinmetz_2013 transcript 302219 302729 . - . gene_id "ST03866"; transcript_id "YDL085C-A"; -chrIV Steinmetz_2013 transcript 306796 307807 . - . gene_id "ST03867"; transcript_id "YDL083C"; -chrIV Steinmetz_2013 transcript 309694 310188 . - . gene_id "ST03868"; transcript_id "YDL081C"; -chrIV Steinmetz_2013 transcript 310475 312656 . - . gene_id "ST03869"; transcript_id "YDL080C"; -chrIV Steinmetz_2013 transcript 312823 314748 . - . gene_id "ST03870"; transcript_id "YDL079C"; -chrIV Steinmetz_2013 transcript 315273 316460 . - . gene_id "ST03871"; transcript_id "YDL078C"; -chrIV Steinmetz_2013 transcript 320441 321699 . - . gene_id "ST03872"; transcript_id "YDL076C"; -chrIV Steinmetz_2013 transcript 323938 326221 . - . gene_id "ST03873"; transcript_id "YDL074C"; -chrIV Steinmetz_2013 transcript 329748 330510 . - . gene_id "ST03874"; transcript_id "YDL072C"; -chrIV Steinmetz_2013 transcript 333007 333943 . - . gene_id "ST03875"; transcript_id "YDL069C"; -chrIV Steinmetz_2013 transcript 333967 334433 . - . gene_id "ST03876"; transcript_id "YDL067C"; -chrIV Steinmetz_2013 transcript 336225 337296 . - . gene_id "ST03877"; transcript_id "YDL065C"; -chrIV Steinmetz_2013 transcript 338128 340221 . - . gene_id "ST03878"; transcript_id "YDL063C"; -chrIV Steinmetz_2013 transcript 340461 341251 . - . gene_id "ST03879"; transcript_id "YDL061C"; -chrIV Steinmetz_2013 transcript 355427 356908 . - . gene_id "ST03880"; transcript_id "YDL055C"; -chrIV Steinmetz_2013 transcript 359746 361374 . - . gene_id "ST03881"; transcript_id "YDL054C"; -chrIV Steinmetz_2013 transcript 361509 362432 . - . gene_id "ST03882"; transcript_id "YDL053C"; -chrIV Steinmetz_2013 transcript 362595 363635 . - . gene_id "ST03883"; transcript_id "YDL052C"; -chrIV Steinmetz_2013 transcript 364818 365950 . - . gene_id "ST03884"; transcript_id "YDL049C"; -chrIV Steinmetz_2013 transcript 366653 368261 . - . gene_id "ST03885"; transcript_id "YDL048C"; -chrIV Steinmetz_2013 transcript 371101 371989 . - . gene_id "ST03886"; transcript_id "SUT462"; -chrIV Steinmetz_2013 transcript 372561 373718 . - . gene_id "ST03887"; transcript_id "YDL045C"; -chrIV Steinmetz_2013 transcript 373891 375323 . - . gene_id "ST03888"; transcript_id "YDL044C"; -chrIV Steinmetz_2013 transcript 375370 376518 . - . gene_id "ST03889"; transcript_id "YDL043C"; -chrIV Steinmetz_2013 transcript 376637 378513 . - . gene_id "ST03890"; transcript_id "YDL042C"; -chrIV Steinmetz_2013 transcript 378762 381465 . - . gene_id "ST03891"; transcript_id "YDL040C"; -chrIV Steinmetz_2013 transcript 387309 388910 . - . gene_id "ST03892"; transcript_id "YDL036C"; -chrIV Steinmetz_2013 transcript 389037 392341 . - . gene_id "ST03893"; transcript_id "YDL035C"; -chrIV Steinmetz_2013 transcript 392406 393951 . - . gene_id "ST03894"; transcript_id "YDL033C"; -chrIV Steinmetz_2013 transcript 400843 403467 . - . gene_id "ST03895"; transcript_id "YDL028C"; -chrIV Steinmetz_2013 transcript 403550 405003 . - . gene_id "ST03896"; transcript_id "YDL027C"; -chrIV Steinmetz_2013 transcript 405237 407402 . - . gene_id "ST03897"; transcript_id "YDL025C"; -chrIV Steinmetz_2013 transcript 414970 416945 . - . gene_id "ST03898"; transcript_id "YDL020C"; -chrIV Steinmetz_2013 transcript 417573 421727 . - . gene_id "ST03899"; transcript_id "YDL019C"; -chrIV Steinmetz_2013 transcript 422744 423570 . - . gene_id "ST03900"; transcript_id "YDL018C"; -chrIV Steinmetz_2013 transcript 428479 428732 . - . gene_id "ST03901"; transcript_id "CUT492"; -chrIV Steinmetz_2013 transcript 430957 431534 . - . gene_id "ST03902"; transcript_id "YDL012C"; -chrIV Steinmetz_2013 transcript 433444 434089 . - . gene_id "ST03903"; transcript_id "SUT464"; -chrIV Steinmetz_2013 transcript 440805 442333 . - . gene_id "ST03904"; transcript_id "YDL005C"; -chrIV Steinmetz_2013 transcript 443659 444206 . - . gene_id "ST03905"; transcript_id "XUT_4R-190"; -chrIV Steinmetz_2013 transcript 443728 444190 . - . gene_id "ST03906"; transcript_id "SUT465"; -chrIV Steinmetz_2013 transcript 446682 447663 . - . gene_id "ST03907"; transcript_id "YDL002C"; -chrIV Steinmetz_2013 transcript 450109 452677 . - . gene_id "ST03908"; transcript_id "YDR001C"; -chrIV Steinmetz_2013 transcript 456669 458211 . - . gene_id "ST03909"; transcript_id "YDR005C"; -chrIV Steinmetz_2013 transcript 458436 461398 . - . gene_id "ST03910"; transcript_id "YDR006C"; -chrIV Steinmetz_2013 transcript 465013 465738 . - . gene_id "ST03911"; transcript_id "YDR010C"; -chrIV Steinmetz_2013 transcript 470772 471536 . - . gene_id "ST03912"; transcript_id "SUT466"; -chrIV Steinmetz_2013 transcript 478352 478791 . - . gene_id "ST03913"; transcript_id "YDR016C"; -chrIV Steinmetz_2013 transcript 478942 482281 . - . gene_id "ST03914"; transcript_id "YDR017C"; -chrIV Steinmetz_2013 transcript 482507 483889 . - . gene_id "ST03915"; transcript_id "YDR018C"; -chrIV Steinmetz_2013 transcript 483984 485369 . - . gene_id "ST03916"; transcript_id "YDR019C"; -chrIV Steinmetz_2013 transcript 487976 488690 . - . gene_id "ST03917"; transcript_id "YDR022C"; -chrIV Steinmetz_2013 transcript 488935 489210 . - . gene_id "ST03918"; transcript_id "SUT467"; -chrIV Steinmetz_2013 transcript 492467 494399 . - . gene_id "ST03919"; transcript_id "YDR026C"; -chrIV Steinmetz_2013 transcript 494567 497441 . - . gene_id "ST03920"; transcript_id "YDR027C"; -chrIV Steinmetz_2013 transcript 497557 501368 . - . gene_id "ST03921"; transcript_id "YDR028C"; -chrIV Steinmetz_2013 transcript 501613 503281 . - . gene_id "ST03922"; transcript_id "YDR030C"; -chrIV Steinmetz_2013 transcript 503946 504764 . - . gene_id "ST03923"; transcript_id "YDR032C"; -chrIV Steinmetz_2013 transcript 506451 507241 . - . gene_id "ST03924"; transcript_id "XUT_4R-218"; -chrIV Steinmetz_2013 transcript 509664 512237 . - . gene_id "ST03925"; transcript_id "YDR034C"; -chrIV Steinmetz_2013 transcript 523072 524723 . - . gene_id "ST03926"; transcript_id "YDR036C"; -chrIV Steinmetz_2013 transcript 540498 541261 . - . gene_id "ST03927"; transcript_id "YDR042C"; -chrIV Steinmetz_2013 transcript 544995 545933 . - . gene_id "ST03928"; transcript_id "SUT469"; -chrIV Steinmetz_2013 transcript 547758 548465 . - . gene_id "ST03929"; transcript_id "YDR045C"; -chrIV Steinmetz_2013 transcript 548680 550666 . - . gene_id "ST03930"; transcript_id "YDR046C"; -chrIV Steinmetz_2013 transcript 550667 555649 . - . gene_id "ST03931"; transcript_id "YDR048C"; -chrIV Steinmetz_2013 transcript 555649 556502 . - . gene_id "ST03932"; transcript_id "YDR050C"; -chrIV Steinmetz_2013 transcript 556996 558106 . - . gene_id "ST03933"; transcript_id "YDR051C"; -chrIV Steinmetz_2013 transcript 558270 560779 . - . gene_id "ST03934"; transcript_id "YDR052C"; -chrIV Steinmetz_2013 transcript 560953 562516 . - . gene_id "ST03935"; transcript_id "YDR054C"; -chrIV Steinmetz_2013 transcript 564919 565698 . - . gene_id "ST03936"; transcript_id "YDR056C"; -chrIV Steinmetz_2013 transcript 567591 568736 . - . gene_id "ST03937"; transcript_id "YDR058C"; -chrIV Steinmetz_2013 transcript 569124 569789 . - . gene_id "ST03938"; transcript_id "YDR059C"; -chrIV Steinmetz_2013 transcript 575008 575832 . - . gene_id "ST03939"; transcript_id "SUT470"; -chrIV Steinmetz_2013 transcript 575799 576341 . - . gene_id "ST03940"; transcript_id "XUT_4R-253"; -chrIV Steinmetz_2013 transcript 581804 582587 . - . gene_id "ST03941"; transcript_id "YDR066C"; -chrIV Steinmetz_2013 transcript 582706 583519 . - . gene_id "ST03942"; transcript_id "YDR067C"; -chrIV Steinmetz_2013 transcript 584634 587776 . - . gene_id "ST03943"; transcript_id "YDR069C"; -chrIV Steinmetz_2013 transcript 587945 588439 . - . gene_id "ST03944"; transcript_id "YDR070C"; -chrIV Steinmetz_2013 transcript 588746 589465 . - . gene_id "ST03945"; transcript_id "YDR071C"; -chrIV Steinmetz_2013 transcript 589667 591477 . - . gene_id "ST03946"; transcript_id "YDR072C"; -chrIV Steinmetz_2013 transcript 592648 593447 . - . gene_id "ST03947"; transcript_id "XUT_4R-263"; -chrIV Steinmetz_2013 transcript 602099 602886 . - . gene_id "ST03948"; transcript_id "YDR078C"; -chrIV Steinmetz_2013 transcript 602927 603250 . - . gene_id "ST03949"; transcript_id "CUT501"; -chrIV Steinmetz_2013 transcript 603381 603844 . - . gene_id "ST03950"; transcript_id "YDR079C-A"; -chrIV Steinmetz_2013 transcript 607269 610168 . - . gene_id "ST03951"; transcript_id "YDR081C"; -chrIV Steinmetz_2013 transcript 613204 614027 . - . gene_id "ST03952"; transcript_id "YDR084C"; -chrIV Steinmetz_2013 transcript 614204 616259 . - . gene_id "ST03953"; transcript_id "YDR085C"; -chrIV Steinmetz_2013 transcript 616727 617263 . - . gene_id "ST03954"; transcript_id "YDR086C"; -chrIV Steinmetz_2013 transcript 617377 618343 . - . gene_id "ST03955"; transcript_id "YDR087C"; -chrIV Steinmetz_2013 transcript 618310 619829 . - . gene_id "ST03956"; transcript_id "YDR088C"; -chrIV Steinmetz_2013 transcript 624729 626112 . - . gene_id "ST03957"; transcript_id "YDR090C"; -chrIV Steinmetz_2013 transcript 626366 628606 . - . gene_id "ST03958"; transcript_id "YDR091C"; -chrIV Steinmetz_2013 transcript 640048 643930 . - . gene_id "ST03959"; transcript_id "YDR097C"; -chrIV Steinmetz_2013 transcript 655567 657489 . - . gene_id "ST03960"; transcript_id "YDR101C"; -chrIV Steinmetz_2013 transcript 665263 666821 . - . gene_id "ST03961"; transcript_id "YDR105C"; -chrIV Steinmetz_2013 transcript 668826 671049 . - . gene_id "ST03962"; transcript_id "YDR107C"; -chrIV Steinmetz_2013 transcript 673360 675667 . - . gene_id "ST03963"; transcript_id "YDR109C"; -chrIV Steinmetz_2013 transcript 678090 679985 . - . gene_id "ST03964"; transcript_id "YDR111C"; -chrIV Steinmetz_2013 transcript 680422 681702 . - . gene_id "ST03965"; transcript_id "YDR113C"; -chrIV Steinmetz_2013 transcript 682605 683606 . - . gene_id "ST03966"; transcript_id "YDR116C"; -chrIV Steinmetz_2013 transcript 683901 685681 . - . gene_id "ST03967"; transcript_id "YDR117C"; -chrIV Steinmetz_2013 transcript 687349 687882 . - . gene_id "ST03968"; transcript_id "XUT_4R-298"; -chrIV Steinmetz_2013 transcript 691339 693261 . - . gene_id "ST03969"; transcript_id "YDR120C"; -chrIV Steinmetz_2013 transcript 697938 699544 . - . gene_id "ST03970"; transcript_id "YDR123C"; -chrIV Steinmetz_2013 transcript 700154 702844 . - . gene_id "ST03971"; transcript_id "YDR125C"; -chrIV Steinmetz_2013 transcript 703379 703934 . - . gene_id "ST03972"; transcript_id "XUT_4R-303"; -chrIV Steinmetz_2013 transcript 703386 703771 . - . gene_id "ST03973"; transcript_id "CUT506"; -chrIV Steinmetz_2013 transcript 713194 715428 . - . gene_id "ST03974"; transcript_id "YDR129C"; -chrIV Steinmetz_2013 transcript 715477 716650 . - . gene_id "ST03975"; transcript_id "YDR130C"; -chrIV Steinmetz_2013 transcript 716716 718540 . - . gene_id "ST03976"; transcript_id "YDR131C"; -chrIV Steinmetz_2013 transcript 718699 720422 . - . gene_id "ST03977"; transcript_id "YDR132C"; -chrIV Steinmetz_2013 transcript 720788 721533 . - . gene_id "ST03978"; transcript_id "YDR133C"; -chrIV Steinmetz_2013 transcript 721681 722197 . - . gene_id "ST03979"; transcript_id "XUT_4R-309"; -chrIV Steinmetz_2013 transcript 722898 727594 . - . gene_id "ST03980"; transcript_id "YDR135C"; -chrIV Steinmetz_2013 transcript 733444 733975 . - . gene_id "ST03981"; transcript_id "YDR139C"; -chrIV Steinmetz_2013 transcript 740347 741769 . - . gene_id "ST03982"; transcript_id "YDR142C"; -chrIV Steinmetz_2013 transcript 741848 744020 . - . gene_id "ST03983"; transcript_id "YDR143C"; -chrIV Steinmetz_2013 transcript 744228 746241 . - . gene_id "ST03984"; transcript_id "YDR144C"; -chrIV Steinmetz_2013 transcript 748547 750906 . - . gene_id "ST03985"; transcript_id "YDR146C"; -chrIV Steinmetz_2013 transcript 753391 755089 . - . gene_id "ST03986"; transcript_id "YDR148C"; -chrIV Steinmetz_2013 transcript 763860 765329 . - . gene_id "ST03987"; transcript_id "YDR151C"; -chrIV Steinmetz_2013 transcript 766614 768104 . - . gene_id "ST03988"; transcript_id "YDR153C"; -chrIV Steinmetz_2013 transcript 769778 770192 . - . gene_id "ST03989"; transcript_id "CUT510"; -chrIV Steinmetz_2013 transcript 780179 781219 . - . gene_id "ST03990"; transcript_id "YDR162C"; -chrIV Steinmetz_2013 transcript 781930 784257 . - . gene_id "ST03991"; transcript_id "YDR164C"; -chrIV Steinmetz_2013 transcript 786204 789270 . - . gene_id "ST03992"; transcript_id "YDR166C"; -chrIV Steinmetz_2013 transcript 791951 794255 . - . gene_id "ST03993"; transcript_id "YDR169C"; -chrIV Steinmetz_2013 transcript 791951 792272 . - . gene_id "ST03994"; transcript_id "XUT_4R-329"; -chrIV Steinmetz_2013 transcript 810420 811682 . - . gene_id "ST03995"; transcript_id "YDR173C"; -chrIV Steinmetz_2013 transcript 813077 814199 . - . gene_id "ST03996"; transcript_id "YDR175C"; -chrIV Steinmetz_2013 transcript 818585 819204 . - . gene_id "ST03997"; transcript_id "YDR179C"; -chrIV Steinmetz_2013 transcript 819646 820895 . - . gene_id "ST03998"; transcript_id "XUT_4R-342"; -chrIV Steinmetz_2013 transcript 825724 827369 . - . gene_id "ST03999"; transcript_id "YDR181C"; -chrIV Steinmetz_2013 transcript 829059 829368 . - . gene_id "ST04000"; transcript_id "XUT_4R-346"; -chrIV Steinmetz_2013 transcript 831808 832576 . - . gene_id "ST04001"; transcript_id "YDR185C"; -chrIV Steinmetz_2013 transcript 832737 835576 . - . gene_id "ST04002"; transcript_id "YDR186C"; -chrIV Steinmetz_2013 transcript 840527 842041 . - . gene_id "ST04003"; transcript_id "YDR190C"; -chrIV Steinmetz_2013 transcript 843477 844919 . - . gene_id "ST04004"; transcript_id "YDR192C"; -chrIV Steinmetz_2013 transcript 845797 847969 . - . gene_id "ST04005"; transcript_id "YDR194C"; -chrIV Steinmetz_2013 transcript 850183 850999 . - . gene_id "ST04006"; transcript_id "YDR196C"; -chrIV Steinmetz_2013 transcript 852497 853999 . - . gene_id "ST04007"; transcript_id "YDR198C"; -chrIV Steinmetz_2013 transcript 854147 856158 . - . gene_id "ST04008"; transcript_id "YDR200C"; -chrIV Steinmetz_2013 transcript 856862 857984 . - . gene_id "ST04009"; transcript_id "YDR202C"; -chrIV Steinmetz_2013 transcript 892607 894623 . - . gene_id "ST04010"; transcript_id "YDR215C"; -chrIV Steinmetz_2013 transcript 892654 893513 . - . gene_id "ST04011"; transcript_id "XUT_4R-365"; -chrIV Steinmetz_2013 transcript 905255 906894 . - . gene_id "ST04012"; transcript_id "YDR219C"; -chrIV Steinmetz_2013 transcript 908485 909375 . - . gene_id "ST04013"; transcript_id "SUT474"; -chrIV Steinmetz_2013 transcript 914190 914746 . - . gene_id "ST04014"; transcript_id "YDR224C"; -chrIV Steinmetz_2013 transcript 921859 923896 . - . gene_id "ST04015"; transcript_id "YDR228C"; -chrIV Steinmetz_2013 transcript 926122 926926 . - . gene_id "ST04016"; transcript_id "YDR231C"; -chrIV Steinmetz_2013 transcript 929324 930416 . - . gene_id "ST04017"; transcript_id "YDR233C"; -chrIV Steinmetz_2013 transcript 935127 935917 . - . gene_id "ST04018"; transcript_id "YDR236C"; -chrIV Steinmetz_2013 transcript 937699 940845 . - . gene_id "ST04019"; transcript_id "YDR238C"; -chrIV Steinmetz_2013 transcript 940977 943429 . - . gene_id "ST04020"; transcript_id "YDR239C"; -chrIV Steinmetz_2013 transcript 943615 945172 . - . gene_id "ST04021"; transcript_id "YDR240C"; -chrIV Steinmetz_2013 transcript 948499 950313 . - . gene_id "ST04022"; transcript_id "YDR243C"; -chrIV Steinmetz_2013 transcript 957671 958405 . - . gene_id "ST04023"; transcript_id "YDR248C"; -chrIV Steinmetz_2013 transcript 958567 959860 . - . gene_id "ST04024"; transcript_id "YDR249C"; -chrIV Steinmetz_2013 transcript 963910 964768 . - . gene_id "ST04025"; transcript_id "YDR253C"; -chrIV Steinmetz_2013 transcript 965599 967867 . - . gene_id "ST04026"; transcript_id "YDR255C"; -chrIV Steinmetz_2013 transcript 967953 969722 . - . gene_id "ST04027"; transcript_id "YDR256C"; -chrIV Steinmetz_2013 transcript 969686 971487 . - . gene_id "ST04028"; transcript_id "YDR257C"; -chrIV Steinmetz_2013 transcript 971702 974272 . - . gene_id "ST04029"; transcript_id "YDR258C"; -chrIV Steinmetz_2013 transcript 974496 976237 . - . gene_id "ST04030"; transcript_id "YDR259C"; -chrIV Steinmetz_2013 transcript 976344 977269 . - . gene_id "ST04031"; transcript_id "YDR260C"; -chrIV Steinmetz_2013 transcript 977407 979244 . - . gene_id "ST04032"; transcript_id "YDR261C"; -chrIV Steinmetz_2013 transcript 980175 980873 . - . gene_id "ST04033"; transcript_id "SUT479"; -chrIV Steinmetz_2013 transcript 994016 995633 . - . gene_id "ST04034"; transcript_id "YDR263C"; -chrIV Steinmetz_2013 transcript 995755 998381 . - . gene_id "ST04035"; transcript_id "YDR264C"; -chrIV Steinmetz_2013 transcript 999970 1002239 . - . gene_id "ST04036"; transcript_id "YDR266C"; -chrIV Steinmetz_2013 transcript 1002364 1003562 . - . gene_id "ST04037"; transcript_id "YDR267C"; -chrIV Steinmetz_2013 transcript 1004530 1005289 . - . gene_id "ST04038"; transcript_id "CUT516"; -chrIV Steinmetz_2013 transcript 1013284 1013684 . - . gene_id "ST04039"; transcript_id "YDR276C"; -chrIV Steinmetz_2013 transcript 1014122 1015860 . - . gene_id "ST04040"; transcript_id "YDR277C"; -chrIV Steinmetz_2013 transcript 1018280 1019138 . - . gene_id "ST04041"; transcript_id "SUT480"; -chrIV Steinmetz_2013 transcript 1021831 1022376 . - . gene_id "ST04042"; transcript_id "YDR281C"; -chrIV Steinmetz_2013 transcript 1023319 1024762 . - . gene_id "ST04043"; transcript_id "YDR282C"; -chrIV Steinmetz_2013 transcript 1030463 1031700 . - . gene_id "ST04044"; transcript_id "YDR284C"; -chrIV Steinmetz_2013 transcript 1035145 1035581 . - . gene_id "ST04045"; transcript_id "YDR286C"; -chrIV Steinmetz_2013 transcript 1038212 1039564 . - . gene_id "ST04046"; transcript_id "YDR289C"; -chrIV Steinmetz_2013 transcript 1043067 1045143 . - . gene_id "ST04047"; transcript_id "YDR292C"; -chrIV Steinmetz_2013 transcript 1050405 1052266 . - . gene_id "ST04048"; transcript_id "YDR294C"; -chrIV Steinmetz_2013 transcript 1052542 1054910 . - . gene_id "ST04049"; transcript_id "YDR295C"; -chrIV Steinmetz_2013 transcript 1057999 1058960 . - . gene_id "ST04050"; transcript_id "YDR298C"; -chrIV Steinmetz_2013 transcript 1061395 1062843 . - . gene_id "ST04051"; transcript_id "YDR300C"; -chrIV Steinmetz_2013 transcript 1068622 1071678 . - . gene_id "ST04052"; transcript_id "YDR303C"; -chrIV Steinmetz_2013 transcript 1071808 1072587 . - . gene_id "ST04053"; transcript_id "YDR304C"; -chrIV Steinmetz_2013 transcript 1073640 1075223 . - . gene_id "ST04054"; transcript_id "YDR306C"; -chrIV Steinmetz_2013 transcript 1077919 1078490 . - . gene_id "ST04055"; transcript_id "YDR308C"; -chrIV Steinmetz_2013 transcript 1079031 1080249 . - . gene_id "ST04056"; transcript_id "YDR309C"; -chrIV Steinmetz_2013 transcript 1080933 1084594 . - . gene_id "ST04057"; transcript_id "YDR310C"; -chrIV Steinmetz_2013 transcript 1089041 1090098 . - . gene_id "ST04058"; transcript_id "YDR313C"; -chrIV Steinmetz_2013 transcript 1090393 1092549 . - . gene_id "ST04059"; transcript_id "YDR314C"; -chrIV Steinmetz_2013 transcript 1092606 1093633 . - . gene_id "ST04060"; transcript_id "YDR315C"; -chrIV Steinmetz_2013 transcript 1102574 1103552 . - . gene_id "ST04061"; transcript_id "SUT481"; -chrIV Steinmetz_2013 transcript 1104929 1105906 . - . gene_id "ST04062"; transcript_id "YDR319C"; -chrIV Steinmetz_2013 transcript 1106004 1108126 . - . gene_id "ST04063"; transcript_id "YDR320C"; -chrIV Steinmetz_2013 transcript 1108201 1108521 . - . gene_id "ST04064"; transcript_id "YDR320C-A"; -chrIV Steinmetz_2013 transcript 1111797 1112311 . - . gene_id "ST04065"; transcript_id "YDR322C-A"; -chrIV Steinmetz_2013 transcript 1112333 1114057 . - . gene_id "ST04066"; transcript_id "YDR323C"; -chrIV Steinmetz_2013 transcript 1125241 1126085 . - . gene_id "ST04067"; transcript_id "YDR328C"; -chrIV Steinmetz_2013 transcript 1126197 1127624 . - . gene_id "ST04068"; transcript_id "YDR329C"; -chrIV Steinmetz_2013 transcript 1130895 1131262 . - . gene_id "ST04069"; transcript_id "XUT_4R-456"; -chrIV Steinmetz_2013 transcript 1130846 1131253 . - . gene_id "ST04070"; transcript_id "SUT482"; -chrIV Steinmetz_2013 transcript 1133037 1135468 . - . gene_id "ST04071"; transcript_id "YDR333C"; -chrIV Steinmetz_2013 transcript 1139756 1140612 . - . gene_id "ST04072"; transcript_id "XUT_4R-458"; -chrIV Steinmetz_2013 transcript 1147245 1149525 . - . gene_id "ST04073"; transcript_id "YDR338C"; -chrIV Steinmetz_2013 transcript 1149860 1150538 . - . gene_id "ST04074"; transcript_id "YDR339C"; -chrIV Steinmetz_2013 transcript 1151715 1153647 . - . gene_id "ST04075"; transcript_id "YDR341C"; -chrIV Steinmetz_2013 transcript 1154074 1156019 . - . gene_id "ST04076"; transcript_id "YDR342C"; -chrIV Steinmetz_2013 transcript 1156015 1159452 . - . gene_id "ST04077"; transcript_id "XUT_4R-468"; -chrIV Steinmetz_2013 transcript 1159269 1161406 . - . gene_id "ST04078"; transcript_id "YDR343C"; -chrIV Steinmetz_2013 transcript 1162818 1164692 . - . gene_id "ST04079"; transcript_id "YDR345C"; -chrIV Steinmetz_2013 transcript 1166899 1168816 . - . gene_id "ST04080"; transcript_id "YDR346C"; -chrIV Steinmetz_2013 transcript 1170146 1172024 . - . gene_id "ST04081"; transcript_id "YDR348C"; -chrIV Steinmetz_2013 transcript 1172264 1174281 . - . gene_id "ST04082"; transcript_id "YDR349C"; -chrIV Steinmetz_2013 transcript 1174579 1174808 . - . gene_id "ST04083"; transcript_id "SUT483"; -chrIV Steinmetz_2013 transcript 1176045 1178202 . - . gene_id "ST04084"; transcript_id "YDR350C"; -chrIV Steinmetz_2013 transcript 1182584 1183296 . - . gene_id "ST04085"; transcript_id "XUT_4R-486"; -chrIV Steinmetz_2013 transcript 1182954 1183490 . - . gene_id "ST04086"; transcript_id "SUT484"; -chrIV Steinmetz_2013 transcript 1189132 1189646 . - . gene_id "ST04087"; transcript_id "YDR357C"; -chrIV Steinmetz_2013 transcript 1191814 1195150 . - . gene_id "ST04088"; transcript_id "YDR359C"; -chrIV Steinmetz_2013 transcript 1195161 1196297 . - . gene_id "ST04089"; transcript_id "YDR361C"; -chrIV Steinmetz_2013 transcript 1196628 1198807 . - . gene_id "ST04090"; transcript_id "YDR362C"; -chrIV Steinmetz_2013 transcript 1202470 1204242 . - . gene_id "ST04091"; transcript_id "YDR364C"; -chrIV Steinmetz_2013 transcript 1204421 1206409 . - . gene_id "ST04092"; transcript_id "YDR365C"; -chrIV Steinmetz_2013 transcript 1214910 1217592 . - . gene_id "ST04093"; transcript_id "YDR369C"; -chrIV Steinmetz_2013 transcript 1217728 1219120 . - . gene_id "ST04094"; transcript_id "YDR370C"; -chrIV Steinmetz_2013 transcript 1220959 1222420 . - . gene_id "ST04095"; transcript_id "YDR372C"; -chrIV Steinmetz_2013 transcript 1225108 1226557 . - . gene_id "ST04096"; transcript_id "YDR375C"; -chrIV Steinmetz_2013 transcript 1229140 1229627 . - . gene_id "ST04097"; transcript_id "YDR378C"; -chrIV Steinmetz_2013 transcript 1233124 1233562 . - . gene_id "ST04098"; transcript_id "YDR379C-A"; -chrIV Steinmetz_2013 transcript 1234084 1236199 . - . gene_id "ST04099"; transcript_id "SUT485"; -chrIV Steinmetz_2013 transcript 1238194 1238851 . - . gene_id "ST04100"; transcript_id "YDR381C-A"; -chrIV Steinmetz_2013 transcript 1239885 1240695 . - . gene_id "ST04101"; transcript_id "YDR383C"; -chrIV Steinmetz_2013 transcript 1241043 1242116 . - . gene_id "ST04102"; transcript_id "YDR384C"; -chrIV Steinmetz_2013 transcript 1247971 1249967 . - . gene_id "ST04103"; transcript_id "YDR387C"; -chrIV Steinmetz_2013 transcript 1254885 1256876 . - . gene_id "ST04104"; transcript_id "YDR390C"; -chrIV Steinmetz_2013 transcript 1257277 1258067 . - . gene_id "ST04105"; transcript_id "YDR391C"; -chrIV Steinmetz_2013 transcript 1259758 1260172 . - . gene_id "ST04106"; transcript_id "SUT487"; -chrIV Steinmetz_2013 transcript 1260595 1261373 . - . gene_id "ST04107"; transcript_id "SUT488"; -chrIV Steinmetz_2013 transcript 1266268 1266975 . - . gene_id "ST04108"; transcript_id "YDR397C"; -chrIV Steinmetz_2013 transcript 1276491 1277361 . - . gene_id "ST04109"; transcript_id "YDR404C"; -chrIV Steinmetz_2013 transcript 1279121 1279925 . - . gene_id "ST04110"; transcript_id "SUT489"; -chrIV Steinmetz_2013 transcript 1284000 1288044 . - . gene_id "ST04111"; transcript_id "YDR407C"; -chrIV Steinmetz_2013 transcript 1288031 1288905 . - . gene_id "ST04112"; transcript_id "YDR408C"; -chrIV Steinmetz_2013 transcript 1292269 1293148 . - . gene_id "ST04113"; transcript_id "YDR410C"; -chrIV Steinmetz_2013 transcript 1293305 1294444 . - . gene_id "ST04114"; transcript_id "YDR411C"; -chrIV Steinmetz_2013 transcript 1295440 1296883 . - . gene_id "ST04115"; transcript_id "YDR414C"; -chrIV Steinmetz_2013 transcript 1296943 1298216 . - . gene_id "ST04116"; transcript_id "YDR415C"; -chrIV Steinmetz_2013 transcript 1315036 1317829 . - . gene_id "ST04117"; transcript_id "YDR422C"; -chrIV Steinmetz_2013 transcript 1317977 1319290 . - . gene_id "ST04118"; transcript_id "YDR423C"; -chrIV Steinmetz_2013 transcript 1319338 1319867 . - . gene_id "ST04119"; transcript_id "YDR424C"; -chrIV Steinmetz_2013 transcript 1323344 1324272 . - . gene_id "ST04120"; transcript_id "YDR428C"; -chrIV Steinmetz_2013 transcript 1324375 1325318 . - . gene_id "ST04121"; transcript_id "YDR429C"; -chrIV Steinmetz_2013 transcript 1325444 1328549 . - . gene_id "ST04122"; transcript_id "YDR430C"; -chrIV Steinmetz_2013 transcript 1332821 1333981 . - . gene_id "ST04123"; transcript_id "YDR435C"; -chrIV Steinmetz_2013 transcript 1340657 1342213 . - . gene_id "ST04124"; transcript_id "SUT492"; -chrIV Steinmetz_2013 transcript 1344273 1345197 . - . gene_id "ST04125"; transcript_id "YDR441C"; -chrIV Steinmetz_2013 transcript 1354711 1355581 . - . gene_id "ST04126"; transcript_id "YDR447C"; -chrIV Steinmetz_2013 transcript 1357510 1358943 . - . gene_id "ST04127"; transcript_id "YDR449C"; -chrIV Steinmetz_2013 transcript 1360908 1362234 . - . gene_id "ST04128"; transcript_id "YDR451C"; -chrIV Steinmetz_2013 transcript 1364985 1365730 . - . gene_id "ST04129"; transcript_id "YDR453C"; -chrIV Steinmetz_2013 transcript 1366161 1366843 . - . gene_id "ST04130"; transcript_id "YDR454C"; -chrIV Steinmetz_2013 transcript 1379881 1382080 . - . gene_id "ST04131"; transcript_id "YDR458C"; -chrIV Steinmetz_2013 transcript 1382152 1383548 . - . gene_id "ST04132"; transcript_id "YDR459C"; -chrIV Steinmetz_2013 transcript 1385356 1385788 . - . gene_id "ST04133"; transcript_id "YDR461C-A"; -chrIV Steinmetz_2013 transcript 1393152 1394617 . - . gene_id "ST04134"; transcript_id "YDR465C"; -chrIV Steinmetz_2013 transcript 1397922 1398794 . - . gene_id "ST04135"; transcript_id "YDR468C"; -chrIV Steinmetz_2013 transcript 1399531 1401305 . - . gene_id "ST04136"; transcript_id "YDR470C"; -chrIV Steinmetz_2013 transcript 1404359 1405908 . - . gene_id "ST04137"; transcript_id "YDR473C"; -chrIV Steinmetz_2013 transcript 1407353 1410192 . - . gene_id "ST04138"; transcript_id "YDR475C"; -chrIV Steinmetz_2013 transcript 1410251 1411145 . - . gene_id "ST04139"; transcript_id "YDR476C"; -chrIV Steinmetz_2013 transcript 1415120 1416922 . - . gene_id "ST04140"; transcript_id "YDR479C"; -chrIV Steinmetz_2013 transcript 1418493 1420305 . - . gene_id "ST04141"; transcript_id "YDR481C"; -chrIV Steinmetz_2013 transcript 1420327 1420852 . - . gene_id "ST04142"; transcript_id "YDR482C"; -chrIV Steinmetz_2013 transcript 1424668 1427215 . - . gene_id "ST04143"; transcript_id "YDR485C"; -chrIV Steinmetz_2013 transcript 1427287 1428129 . - . gene_id "ST04144"; transcript_id "YDR486C"; -chrIV Steinmetz_2013 transcript 1428250 1429038 . - . gene_id "ST04145"; transcript_id "YDR487C"; -chrIV Steinmetz_2013 transcript 1431885 1434353 . - . gene_id "ST04146"; transcript_id "YDR490C"; -chrIV Steinmetz_2013 transcript 1437964 1441186 . - . gene_id "ST04147"; transcript_id "YDR495C"; -chrIV Steinmetz_2013 transcript 1441359 1443431 . - . gene_id "ST04148"; transcript_id "YDR496C"; -chrIV Steinmetz_2013 transcript 1443604 1445542 . - . gene_id "ST04149"; transcript_id "YDR497C"; -chrIV Steinmetz_2013 transcript 1445793 1447029 . - . gene_id "ST04150"; transcript_id "YDR498C"; -chrIV Steinmetz_2013 transcript 1450111 1450874 . - . gene_id "ST04151"; transcript_id "YDR500C"; -chrIV Steinmetz_2013 transcript 1451185 1452863 . - . gene_id "ST04152"; transcript_id "SUT494"; -chrIV Steinmetz_2013 transcript 1453017 1454512 . - . gene_id "ST04153"; transcript_id "YDR502C"; -chrIV Steinmetz_2013 transcript 1454830 1455928 . - . gene_id "ST04154"; transcript_id "YDR503C"; -chrIV Steinmetz_2013 transcript 1459304 1461593 . - . gene_id "ST04155"; transcript_id "YDR506C"; -chrIV Steinmetz_2013 transcript 1462177 1465824 . - . gene_id "ST04156"; transcript_id "YDR507C"; -chrIV Steinmetz_2013 transcript 1466436 1468488 . - . gene_id "ST04157"; transcript_id "YDR508C"; -chrIV Steinmetz_2013 transcript 1471467 1473060 . - . gene_id "ST04158"; transcript_id "YDR514C"; -chrIV Steinmetz_2013 transcript 1474856 1476528 . - . gene_id "ST04159"; transcript_id "YDR516C"; -chrIV Steinmetz_2013 transcript 1476579 1476993 . - . gene_id "ST04160"; transcript_id "SUT495"; -chrIV Steinmetz_2013 transcript 1480981 1483485 . - . gene_id "ST04161"; transcript_id "YDR520C"; -chrIV Steinmetz_2013 transcript 1487233 1489057 . - . gene_id "ST04162"; transcript_id "YDR524C"; -chrIV Steinmetz_2013 transcript 1489276 1489843 . - . gene_id "ST04163"; transcript_id "YDR524C-B"; -chrIV Steinmetz_2013 transcript 1489805 1490443 . - . gene_id "ST04164"; transcript_id "YDR524C-A"; -chrIV Steinmetz_2013 transcript 1493589 1493938 . - . gene_id "ST04165"; transcript_id "SUT496"; -chrIV Steinmetz_2013 transcript 1495975 1496590 . - . gene_id "ST04166"; transcript_id "YDR529C"; -chrIV Steinmetz_2013 transcript 1496638 1497772 . - . gene_id "ST04167"; transcript_id "YDR530C"; -chrIV Steinmetz_2013 transcript 1499334 1500586 . - . gene_id "ST04168"; transcript_id "YDR532C"; -chrIV Steinmetz_2013 transcript 1501376 1502188 . - . gene_id "ST04169"; transcript_id "YDR533C"; -chrIV Steinmetz_2013 transcript 1503086 1504922 . - . gene_id "ST04170"; transcript_id "YDR534C"; -chrIV Steinmetz_2013 transcript 1504957 1507627 . - . gene_id "ST04171"; transcript_id "YDR535C"; -chrIV Steinmetz_2013 transcript 1507899 1509553 . - . gene_id "ST04172"; transcript_id "SUT498"; -chrIV Steinmetz_2013 transcript 1516801 1517797 . - . gene_id "ST04173"; transcript_id "YDR540C"; -chrIV Steinmetz_2013 transcript 1519476 1520881 . - . gene_id "ST04174"; transcript_id "YDR541C"; -chrIV Steinmetz_2013 transcript 1795 3569 . + . gene_id "ST04175"; transcript_id "YDL248W"; -chrIV Steinmetz_2013 transcript 20557 21443 . + . gene_id "ST04176"; transcript_id "YDL241W"; -chrIV Steinmetz_2013 transcript 21813 22591 . + . gene_id "ST04177"; transcript_id "XUT_4F-14"; -chrIV Steinmetz_2013 transcript 22633 26115 . + . gene_id "ST04178"; transcript_id "YDL240W"; -chrIV Steinmetz_2013 transcript 30634 31908 . + . gene_id "ST04179"; transcript_id "YDL237W"; -chrIV Steinmetz_2013 transcript 32245 33374 . + . gene_id "ST04180"; transcript_id "YDL236W"; -chrIV Steinmetz_2013 transcript 36775 38340 . + . gene_id "ST04181"; transcript_id "YDL233W"; -chrIV Steinmetz_2013 transcript 38468 38885 . + . gene_id "ST04182"; transcript_id "YDL232W"; -chrIV Steinmetz_2013 transcript 42674 43743 . + . gene_id "ST04183"; transcript_id "YDL230W"; -chrIV Steinmetz_2013 transcript 44035 46008 . + . gene_id "ST04184"; transcript_id "YDL229W"; -chrIV Steinmetz_2013 transcript 52404 54188 . + . gene_id "ST04185"; transcript_id "YDL225W"; -chrIV Steinmetz_2013 transcript 59124 60570 . + . gene_id "ST04186"; transcript_id "SUT041"; -chrIV Steinmetz_2013 transcript 61136 63187 . + . gene_id "ST04187"; transcript_id "YDL221W"; -chrIV Steinmetz_2013 transcript 65196 66042 . + . gene_id "ST04188"; transcript_id "YDL219W"; -chrIV Steinmetz_2013 transcript 66148 67683 . + . gene_id "ST04189"; transcript_id "YDL218W"; -chrIV Steinmetz_2013 transcript 78404 79203 . + . gene_id "ST04190"; transcript_id "YDL212W"; -chrIV Steinmetz_2013 transcript 80698 82709 . + . gene_id "ST04191"; transcript_id "SUT042"; -chrIV Steinmetz_2013 transcript 81118 83393 . + . gene_id "ST04192"; transcript_id "XUT_4F-50"; -chrIV Steinmetz_2013 transcript 87475 88109 . + . gene_id "ST04193"; transcript_id "YDL208W"; -chrIV Steinmetz_2013 transcript 88210 89932 . + . gene_id "ST04194"; transcript_id "YDL207W"; -chrIV Steinmetz_2013 transcript 90027 92483 . + . gene_id "ST04195"; transcript_id "YDL206W"; -chrIV Steinmetz_2013 transcript 94107 95965 . + . gene_id "ST04196"; transcript_id "YDL204W"; -chrIV Steinmetz_2013 transcript 98422 99315 . + . gene_id "ST04197"; transcript_id "YDL202W"; -chrIV Steinmetz_2013 transcript 99544 100504 . + . gene_id "ST04198"; transcript_id "YDL201W"; -chrIV Steinmetz_2013 transcript 107084 111156 . + . gene_id "ST04199"; transcript_id "YDL195W"; -chrIV Steinmetz_2013 transcript 114565 115956 . + . gene_id "ST04200"; transcript_id "YDL193W"; -chrIV Steinmetz_2013 transcript 116278 116925 . + . gene_id "ST04201"; transcript_id "YDL192W"; -chrIV Steinmetz_2013 transcript 117642 118616 . + . gene_id "ST04202"; transcript_id "YDL191W"; -chrIV Steinmetz_2013 transcript 121987 123695 . + . gene_id "ST04203"; transcript_id "YDL189W"; -chrIV Steinmetz_2013 transcript 126679 130107 . + . gene_id "ST04204"; transcript_id "YDL185W"; -chrIV Steinmetz_2013 transcript 133399 134811 . + . gene_id "ST04205"; transcript_id "YDL182W"; -chrIV Steinmetz_2013 transcript 135093 135545 . + . gene_id "ST04206"; transcript_id "YDL181W"; -chrIV Steinmetz_2013 transcript 135764 137583 . + . gene_id "ST04207"; transcript_id "YDL180W"; -chrIV Steinmetz_2013 transcript 138196 139357 . + . gene_id "ST04208"; transcript_id "YDL179W"; -chrIV Steinmetz_2013 transcript 139497 141177 . + . gene_id "ST04209"; transcript_id "YDL178W"; -chrIV Steinmetz_2013 transcript 141960 144338 . + . gene_id "ST04210"; transcript_id "YDL176W"; -chrIV Steinmetz_2013 transcript 156318 158057 . + . gene_id "ST04211"; transcript_id "YDL170W"; -chrIV Steinmetz_2013 transcript 159548 160967 . + . gene_id "ST04212"; transcript_id "YDL168W"; -chrIV Steinmetz_2013 transcript 164241 164900 . + . gene_id "ST04213"; transcript_id "YDL165W"; -chrIV Steinmetz_2013 transcript 167698 169186 . + . gene_id "ST04214"; transcript_id "YDL161W"; -chrIV Steinmetz_2013 transcript 172435 174150 . + . gene_id "ST04215"; transcript_id "YDL159W"; -chrIV Steinmetz_2013 transcript 176643 178187 . + . gene_id "ST04216"; transcript_id "YDL155W"; -chrIV Steinmetz_2013 transcript 183237 184706 . + . gene_id "ST04217"; transcript_id "YDL150W"; -chrIV Steinmetz_2013 transcript 184880 188015 . + . gene_id "ST04218"; transcript_id "YDL149W"; -chrIV Steinmetz_2013 transcript 190893 192407 . + . gene_id "ST04219"; transcript_id "YDL147W"; -chrIV Steinmetz_2013 transcript 192559 194247 . + . gene_id "ST04220"; transcript_id "YDL146W"; -chrIV Steinmetz_2013 transcript 199961 201680 . + . gene_id "ST04221"; transcript_id "YDL143W"; -chrIV Steinmetz_2013 transcript 202800 205380 . + . gene_id "ST04222"; transcript_id "YDL141W"; -chrIV Steinmetz_2013 transcript 213175 215786 . + . gene_id "ST04223"; transcript_id "YDL138W"; -chrIV Steinmetz_2013 transcript 216056 217204 . + . gene_id "ST04224"; transcript_id "YDL137W"; -chrIV Steinmetz_2013 transcript 217567 218442 . + . gene_id "ST04225"; transcript_id "YDL136W"; -chrIV Steinmetz_2013 transcript 219354 219769 . + . gene_id "ST04226"; transcript_id "XUT_4F-115"; -chrIV Steinmetz_2013 transcript 220928 221611 . + . gene_id "ST04227"; transcript_id "XUT_4F-117"; -chrIV Steinmetz_2013 transcript 222292 223839 . + . gene_id "ST04228"; transcript_id "YDL133W"; -chrIV Steinmetz_2013 transcript 227357 228817 . + . gene_id "ST04229"; transcript_id "YDL131W"; -chrIV Steinmetz_2013 transcript 229106 229593 . + . gene_id "ST04230"; transcript_id "YDL130W-A"; -chrIV Steinmetz_2013 transcript 229889 230620 . + . gene_id "ST04231"; transcript_id "YDL130W"; -chrIV Steinmetz_2013 transcript 230919 232158 . + . gene_id "ST04232"; transcript_id "YDL129W"; -chrIV Steinmetz_2013 transcript 232583 234079 . + . gene_id "ST04233"; transcript_id "YDL128W"; -chrIV Steinmetz_2013 transcript 234863 236020 . + . gene_id "ST04234"; transcript_id "YDL127W"; -chrIV Steinmetz_2013 transcript 238927 239524 . + . gene_id "ST04235"; transcript_id "XUT_4F-127"; -chrIV Steinmetz_2013 transcript 240214 241269 . + . gene_id "ST04236"; transcript_id "YDL124W"; -chrIV Steinmetz_2013 transcript 241388 242328 . + . gene_id "ST04237"; transcript_id "YDL123W"; -chrIV Steinmetz_2013 transcript 242340 245042 . + . gene_id "ST04238"; transcript_id "YDL122W"; -chrIV Steinmetz_2013 transcript 245843 246601 . + . gene_id "ST04239"; transcript_id "YDL120W"; -chrIV Steinmetz_2013 transcript 248284 251389 . + . gene_id "ST04240"; transcript_id "YDL117W"; -chrIV Steinmetz_2013 transcript 251525 253817 . + . gene_id "ST04241"; transcript_id "YDL116W"; -chrIV Steinmetz_2013 transcript 264398 264908 . + . gene_id "ST04242"; transcript_id "XUT_4F-137"; -chrIV Steinmetz_2013 transcript 267675 268737 . + . gene_id "ST04243"; transcript_id "YDL108W"; -chrIV Steinmetz_2013 transcript 268850 270181 . + . gene_id "ST04244"; transcript_id "YDL107W"; -chrIV Steinmetz_2013 transcript 272345 273756 . + . gene_id "ST04245"; transcript_id "YDL105W"; -chrIV Steinmetz_2013 transcript 276791 280274 . + . gene_id "ST04246"; transcript_id "YDL102W"; -chrIV Steinmetz_2013 transcript 283365 284525 . + . gene_id "ST04247"; transcript_id "YDL099W"; -chrIV Steinmetz_2013 transcript 287029 289589 . + . gene_id "ST04248"; transcript_id "YDL095W"; -chrIV Steinmetz_2013 transcript 289861 292408 . + . gene_id "ST04249"; transcript_id "YDL093W"; -chrIV Steinmetz_2013 transcript 292758 293367 . + . gene_id "ST04250"; transcript_id "YDL092W"; -chrIV Steinmetz_2013 transcript 296521 298356 . + . gene_id "ST04251"; transcript_id "YDL089W"; -chrIV Steinmetz_2013 transcript 301408 302293 . + . gene_id "ST04252"; transcript_id "YDL086W"; -chrIV Steinmetz_2013 transcript 302917 304935 . + . gene_id "ST04253"; transcript_id "YDL085W"; -chrIV Steinmetz_2013 transcript 305069 306664 . + . gene_id "ST04254"; transcript_id "YDL084W"; -chrIV Steinmetz_2013 transcript 308395 309530 . + . gene_id "ST04255"; transcript_id "YDL082W"; -chrIV Steinmetz_2013 transcript 310438 311019 . + . gene_id "ST04256"; transcript_id "CUT054"; -chrIV Steinmetz_2013 transcript 312873 314097 . + . gene_id "ST04257"; transcript_id "SUT043"; -chrIV Steinmetz_2013 transcript 315169 316887 . + . gene_id "ST04258"; transcript_id "SUT044"; -chrIV Steinmetz_2013 transcript 316569 316887 . + . gene_id "ST04259"; transcript_id "XUT_4F-161"; -chrIV Steinmetz_2013 transcript 322195 323055 . + . gene_id "ST04260"; transcript_id "YDL075W"; -chrIV Steinmetz_2013 transcript 323746 324493 . + . gene_id "ST04261"; transcript_id "SUT046"; -chrIV Steinmetz_2013 transcript 326433 329623 . + . gene_id "ST04262"; transcript_id "YDL073W"; -chrIV Steinmetz_2013 transcript 331001 333097 . + . gene_id "ST04263"; transcript_id "YDL070W"; -chrIV Steinmetz_2013 transcript 334818 336262 . + . gene_id "ST04264"; transcript_id "YDL066W"; -chrIV Steinmetz_2013 transcript 337458 338170 . + . gene_id "ST04265"; transcript_id "YDL064W"; -chrIV Steinmetz_2013 transcript 351399 352461 . + . gene_id "ST04266"; transcript_id "YDL057W"; -chrIV Steinmetz_2013 transcript 363937 364876 . + . gene_id "ST04267"; transcript_id "YDL051W"; -chrIV Steinmetz_2013 transcript 371200 372038 . + . gene_id "ST04268"; transcript_id "YDL046W"; -chrIV Steinmetz_2013 transcript 372224 372656 . + . gene_id "ST04269"; transcript_id "YDL045W-A"; -chrIV Steinmetz_2013 transcript 378068 378875 . + . gene_id "ST04270"; transcript_id "YDL041W"; -chrIV Steinmetz_2013 transcript 387056 387629 . + . gene_id "ST04271"; transcript_id "XUT_4F-193"; -chrIV Steinmetz_2013 transcript 394165 397280 . + . gene_id "ST04272"; transcript_id "YDL031W"; -chrIV Steinmetz_2013 transcript 397476 399220 . + . gene_id "ST04273"; transcript_id "YDL030W"; -chrIV Steinmetz_2013 transcript 399320 400765 . + . gene_id "ST04274"; transcript_id "YDL029W"; -chrIV Steinmetz_2013 transcript 405290 407406 . + . gene_id "ST04275"; transcript_id "YDL025W-A"; -chrIV Steinmetz_2013 transcript 407615 408171 . + . gene_id "ST04276"; transcript_id "SUT049"; -chrIV Steinmetz_2013 transcript 411760 413156 . + . gene_id "ST04277"; transcript_id "YDL022W"; -chrIV Steinmetz_2013 transcript 413575 413917 . + . gene_id "ST04278"; transcript_id "CUT056"; -chrIV Steinmetz_2013 transcript 413929 414963 . + . gene_id "ST04279"; transcript_id "YDL021W"; -chrIV Steinmetz_2013 transcript 424192 425846 . + . gene_id "ST04280"; transcript_id "YDL017W"; -chrIV Steinmetz_2013 transcript 427221 428512 . + . gene_id "ST04281"; transcript_id "YDL014W"; -chrIV Steinmetz_2013 transcript 428932 431040 . + . gene_id "ST04282"; transcript_id "YDL013W"; -chrIV Steinmetz_2013 transcript 432297 433312 . + . gene_id "ST04283"; transcript_id "YDL010W"; -chrIV Steinmetz_2013 transcript 433497 434108 . + . gene_id "ST04284"; transcript_id "YDL008W"; -chrIV Steinmetz_2013 transcript 438014 439433 . + . gene_id "ST04285"; transcript_id "YDL007W"; -chrIV Steinmetz_2013 transcript 439588 440870 . + . gene_id "ST04286"; transcript_id "YDL006W"; -chrIV Steinmetz_2013 transcript 442986 443709 . + . gene_id "ST04287"; transcript_id "YDL004W"; -chrIV Steinmetz_2013 transcript 444602 446490 . + . gene_id "ST04288"; transcript_id "YDL003W"; -chrIV Steinmetz_2013 transcript 447906 449392 . + . gene_id "ST04289"; transcript_id "YDL001W"; -chrIV Steinmetz_2013 transcript 453016 453830 . + . gene_id "ST04290"; transcript_id "YDR002W"; -chrIV Steinmetz_2013 transcript 461832 462555 . + . gene_id "ST04291"; transcript_id "YDR007W"; -chrIV Steinmetz_2013 transcript 463310 465083 . + . gene_id "ST04292"; transcript_id "YDR009W"; -chrIV Steinmetz_2013 transcript 471004 471865 . + . gene_id "ST04293"; transcript_id "XUT_4F-231"; -chrIV Steinmetz_2013 transcript 471821 473018 . + . gene_id "ST04294"; transcript_id "YDR012W"; -chrIV Steinmetz_2013 transcript 473141 473872 . + . gene_id "ST04295"; transcript_id "YDR013W"; -chrIV Steinmetz_2013 transcript 473995 476209 . + . gene_id "ST04296"; transcript_id "YDR014W"; -chrIV Steinmetz_2013 transcript 481987 482323 . + . gene_id "ST04297"; transcript_id "XUT_4F-238"; -chrIV Steinmetz_2013 transcript 485627 486400 . + . gene_id "ST04298"; transcript_id "XUT_4F-242"; -chrIV Steinmetz_2013 transcript 486697 488057 . + . gene_id "ST04299"; transcript_id "YDR021W"; -chrIV Steinmetz_2013 transcript 489486 490942 . + . gene_id "ST04300"; transcript_id "YDR023W"; -chrIV Steinmetz_2013 transcript 491509 492413 . + . gene_id "ST04301"; transcript_id "YDR025W"; -chrIV Steinmetz_2013 transcript 501491 501720 . + . gene_id "ST04302"; transcript_id "SUT052"; -chrIV Steinmetz_2013 transcript 501786 502360 . + . gene_id "ST04303"; transcript_id "CUT064"; -chrIV Steinmetz_2013 transcript 503468 504011 . + . gene_id "ST04304"; transcript_id "YDR031W"; -chrIV Steinmetz_2013 transcript 506562 507903 . + . gene_id "ST04305"; transcript_id "SUT053"; -chrIV Steinmetz_2013 transcript 507901 509591 . + . gene_id "ST04306"; transcript_id "YDR033W"; -chrIV Steinmetz_2013 transcript 521276 521698 . + . gene_id "ST04307"; transcript_id "YDR034W-B"; -chrIV Steinmetz_2013 transcript 521795 523158 . + . gene_id "ST04308"; transcript_id "YDR035W"; -chrIV Steinmetz_2013 transcript 525419 527281 . + . gene_id "ST04309"; transcript_id "YDR037W"; -chrIV Steinmetz_2013 transcript 539795 540575 . + . gene_id "ST04310"; transcript_id "YDR041W"; -chrIV Steinmetz_2013 transcript 546599 547765 . + . gene_id "ST04311"; transcript_id "YDR044W"; -chrIV Steinmetz_2013 transcript 551736 553024 . + . gene_id "ST04312"; transcript_id "YDR047W"; -chrIV Steinmetz_2013 transcript 553217 555310 . + . gene_id "ST04313"; transcript_id "YDR049W"; -chrIV Steinmetz_2013 transcript 556733 557061 . + . gene_id "ST04314"; transcript_id "SUT056"; -chrIV Steinmetz_2013 transcript 563466 564988 . + . gene_id "ST04315"; transcript_id "YDR055W"; -chrIV Steinmetz_2013 transcript 565902 567741 . + . gene_id "ST04316"; transcript_id "YDR057W"; -chrIV Steinmetz_2013 transcript 569122 570655 . + . gene_id "ST04317"; transcript_id "XUT_4F-278"; -chrIV Steinmetz_2013 transcript 570618 573814 . + . gene_id "ST04318"; transcript_id "YDR060W"; -chrIV Steinmetz_2013 transcript 574109 575893 . + . gene_id "ST04319"; transcript_id "YDR061W"; -chrIV Steinmetz_2013 transcript 576114 578446 . + . gene_id "ST04320"; transcript_id "YDR062W"; -chrIV Steinmetz_2013 transcript 578595 579187 . + . gene_id "ST04321"; transcript_id "YDR063W"; -chrIV Steinmetz_2013 transcript 579437 580559 . + . gene_id "ST04322"; transcript_id "YDR064W"; -chrIV Steinmetz_2013 transcript 580650 582368 . + . gene_id "ST04323"; transcript_id "YDR065W"; -chrIV Steinmetz_2013 transcript 583660 584737 . + . gene_id "ST04324"; transcript_id "YDR068W"; -chrIV Steinmetz_2013 transcript 592355 593202 . + . gene_id "ST04325"; transcript_id "YDR073W"; -chrIV Steinmetz_2013 transcript 593672 596838 . + . gene_id "ST04326"; transcript_id "YDR074W"; -chrIV Steinmetz_2013 transcript 596982 598241 . + . gene_id "ST04327"; transcript_id "YDR075W"; -chrIV Steinmetz_2013 transcript 598413 600786 . + . gene_id "ST04328"; transcript_id "YDR076W"; -chrIV Steinmetz_2013 transcript 600762 602139 . + . gene_id "ST04329"; transcript_id "YDR077W"; -chrIV Steinmetz_2013 transcript 602282 602794 . + . gene_id "ST04330"; transcript_id "XUT_4F-293"; -chrIV Steinmetz_2013 transcript 603033 603610 . + . gene_id "ST04331"; transcript_id "YDR079W"; -chrIV Steinmetz_2013 transcript 603976 607042 . + . gene_id "ST04332"; transcript_id "YDR080W"; -chrIV Steinmetz_2013 transcript 610349 612063 . + . gene_id "ST04333"; transcript_id "YDR082W"; -chrIV Steinmetz_2013 transcript 612051 613341 . + . gene_id "ST04334"; transcript_id "YDR083W"; -chrIV Steinmetz_2013 transcript 617740 618407 . + . gene_id "ST04335"; transcript_id "XUT_4F-306"; -chrIV Steinmetz_2013 transcript 622069 624813 . + . gene_id "ST04336"; transcript_id "YDR089W"; -chrIV Steinmetz_2013 transcript 629852 630699 . + . gene_id "ST04337"; transcript_id "YDR092W"; -chrIV Steinmetz_2013 transcript 636856 639960 . + . gene_id "ST04338"; transcript_id "YDR096W"; -chrIV Steinmetz_2013 transcript 652715 654655 . + . gene_id "ST04339"; transcript_id "YDR099W"; -chrIV Steinmetz_2013 transcript 654973 655570 . + . gene_id "ST04340"; transcript_id "YDR100W"; -chrIV Steinmetz_2013 transcript 657739 661149 . + . gene_id "ST04341"; transcript_id "YDR103W"; -chrIV Steinmetz_2013 transcript 657761 658235 . + . gene_id "ST04342"; transcript_id "XUT_4F-321"; -chrIV Steinmetz_2013 transcript 666982 667905 . + . gene_id "ST04343"; transcript_id "YDR106W"; -chrIV Steinmetz_2013 transcript 671233 673452 . + . gene_id "ST04344"; transcript_id "YDR108W"; -chrIV Steinmetz_2013 transcript 676064 677985 . + . gene_id "ST04345"; transcript_id "YDR110W"; -chrIV Steinmetz_2013 transcript 680207 680567 . + . gene_id "ST04346"; transcript_id "XUT_4F-328"; -chrIV Steinmetz_2013 transcript 682135 682606 . + . gene_id "ST04347"; transcript_id "YDR115W"; -chrIV Steinmetz_2013 transcript 688132 690588 . + . gene_id "ST04348"; transcript_id "YDR119W"; -chrIV Steinmetz_2013 transcript 690970 691459 . + . gene_id "ST04349"; transcript_id "YDR119W-A"; -chrIV Steinmetz_2013 transcript 693465 694283 . + . gene_id "ST04350"; transcript_id "YDR121W"; -chrIV Steinmetz_2013 transcript 694393 698058 . + . gene_id "ST04351"; transcript_id "YDR122W"; -chrIV Steinmetz_2013 transcript 699767 701816 . + . gene_id "ST04352"; transcript_id "YDR124W"; -chrIV Steinmetz_2013 transcript 704461 709320 . + . gene_id "ST04353"; transcript_id "YDR127W"; -chrIV Steinmetz_2013 transcript 727852 728133 . + . gene_id "ST04354"; transcript_id "CUT069"; -chrIV Steinmetz_2013 transcript 728159 730394 . + . gene_id "ST04355"; transcript_id "YDR137W"; -chrIV Steinmetz_2013 transcript 730566 732890 . + . gene_id "ST04356"; transcript_id "YDR138W"; -chrIV Steinmetz_2013 transcript 734124 734907 . + . gene_id "ST04357"; transcript_id "YDR140W"; -chrIV Steinmetz_2013 transcript 746651 748556 . + . gene_id "ST04358"; transcript_id "YDR145W"; -chrIV Steinmetz_2013 transcript 751569 753272 . + . gene_id "ST04359"; transcript_id "YDR147W"; -chrIV Steinmetz_2013 transcript 765682 766545 . + . gene_id "ST04360"; transcript_id "YDR152W"; -chrIV Steinmetz_2013 transcript 770349 771568 . + . gene_id "ST04361"; transcript_id "YDR158W"; -chrIV Steinmetz_2013 transcript 779002 780288 . + . gene_id "ST04362"; transcript_id "YDR161W"; -chrIV Steinmetz_2013 transcript 784829 786287 . + . gene_id "ST04363"; transcript_id "YDR165W"; -chrIV Steinmetz_2013 transcript 789417 790169 . + . gene_id "ST04364"; transcript_id "YDR167W"; -chrIV Steinmetz_2013 transcript 790288 791925 . + . gene_id "ST04365"; transcript_id "YDR168W"; -chrIV Steinmetz_2013 transcript 795204 796090 . + . gene_id "ST04366"; transcript_id "CUT072"; -chrIV Steinmetz_2013 transcript 806535 807832 . + . gene_id "ST04367"; transcript_id "YDR171W"; -chrIV Steinmetz_2013 transcript 808280 810557 . + . gene_id "ST04368"; transcript_id "YDR172W"; -chrIV Steinmetz_2013 transcript 812087 813022 . + . gene_id "ST04369"; transcript_id "YDR174W"; -chrIV Steinmetz_2013 transcript 814417 816612 . + . gene_id "ST04370"; transcript_id "YDR176W"; -chrIV Steinmetz_2013 transcript 816780 817636 . + . gene_id "ST04371"; transcript_id "YDR177W"; -chrIV Steinmetz_2013 transcript 817848 818691 . + . gene_id "ST04372"; transcript_id "YDR178W"; -chrIV Steinmetz_2013 transcript 819340 820870 . + . gene_id "ST04373"; transcript_id "YDR179W-A"; -chrIV Steinmetz_2013 transcript 821152 825827 . + . gene_id "ST04374"; transcript_id "YDR180W"; -chrIV Steinmetz_2013 transcript 827529 829081 . + . gene_id "ST04375"; transcript_id "YDR182W"; -chrIV Steinmetz_2013 transcript 829544 830472 . + . gene_id "ST04376"; transcript_id "YDR183W"; -chrIV Steinmetz_2013 transcript 831767 832532 . + . gene_id "ST04377"; transcript_id "XUT_4F-395"; -chrIV Steinmetz_2013 transcript 831767 832628 . + . gene_id "ST04378"; transcript_id "SUT061"; -chrIV Steinmetz_2013 transcript 836384 838224 . + . gene_id "ST04379"; transcript_id "YDR188W"; -chrIV Steinmetz_2013 transcript 838328 840506 . + . gene_id "ST04380"; transcript_id "YDR189W"; -chrIV Steinmetz_2013 transcript 842293 843558 . + . gene_id "ST04381"; transcript_id "YDR191W"; -chrIV Steinmetz_2013 transcript 848360 850284 . + . gene_id "ST04382"; transcript_id "YDR195W"; -chrIV Steinmetz_2013 transcript 851195 852526 . + . gene_id "ST04383"; transcript_id "YDR197W"; -chrIV Steinmetz_2013 transcript 856317 856931 . + . gene_id "ST04384"; transcript_id "YDR201W"; -chrIV Steinmetz_2013 transcript 858137 859305 . + . gene_id "ST04385"; transcript_id "YDR204W"; -chrIV Steinmetz_2013 transcript 859333 861617 . + . gene_id "ST04386"; transcript_id "YDR205W"; -chrIV Steinmetz_2013 transcript 861716 864812 . + . gene_id "ST04387"; transcript_id "YDR206W"; -chrIV Steinmetz_2013 transcript 868085 870697 . + . gene_id "ST04388"; transcript_id "YDR208W"; -chrIV Steinmetz_2013 transcript 871066 871484 . + . gene_id "ST04389"; transcript_id "YDR210W"; -chrIV Steinmetz_2013 transcript 884676 887017 . + . gene_id "ST04390"; transcript_id "YDR211W"; -chrIV Steinmetz_2013 transcript 887167 888999 . + . gene_id "ST04391"; transcript_id "YDR212W"; -chrIV Steinmetz_2013 transcript 889537 892532 . + . gene_id "ST04392"; transcript_id "YDR213W"; -chrIV Steinmetz_2013 transcript 892759 894024 . + . gene_id "ST04393"; transcript_id "YDR214W"; -chrIV Steinmetz_2013 transcript 907317 909969 . + . gene_id "ST04394"; transcript_id "YDR221W"; -chrIV Steinmetz_2013 transcript 910018 911452 . + . gene_id "ST04395"; transcript_id "YDR222W"; -chrIV Steinmetz_2013 transcript 911983 913853 . + . gene_id "ST04396"; transcript_id "YDR223W"; -chrIV Steinmetz_2013 transcript 915455 916108 . + . gene_id "ST04397"; transcript_id "YDR225W"; -chrIV Steinmetz_2013 transcript 916463 917281 . + . gene_id "ST04398"; transcript_id "YDR226W"; -chrIV Steinmetz_2013 transcript 917446 921813 . + . gene_id "ST04399"; transcript_id "YDR227W"; -chrIV Steinmetz_2013 transcript 924684 926200 . + . gene_id "ST04400"; transcript_id "YDR229W"; -chrIV Steinmetz_2013 transcript 927201 929273 . + . gene_id "ST04401"; transcript_id "YDR232W"; -chrIV Steinmetz_2013 transcript 931102 933312 . + . gene_id "ST04402"; transcript_id "YDR234W"; -chrIV Steinmetz_2013 transcript 933504 935221 . + . gene_id "ST04403"; transcript_id "YDR235W"; -chrIV Steinmetz_2013 transcript 936473 937619 . + . gene_id "ST04404"; transcript_id "YDR237W"; -chrIV Steinmetz_2013 transcript 946700 948551 . + . gene_id "ST04405"; transcript_id "YDR242W"; -chrIV Steinmetz_2013 transcript 950538 952595 . + . gene_id "ST04406"; transcript_id "YDR244W"; -chrIV Steinmetz_2013 transcript 952716 954124 . + . gene_id "ST04407"; transcript_id "YDR245W"; -chrIV Steinmetz_2013 transcript 954253 955101 . + . gene_id "ST04408"; transcript_id "YDR246W"; -chrIV Steinmetz_2013 transcript 955644 957770 . + . gene_id "ST04409"; transcript_id "YDR247W"; -chrIV Steinmetz_2013 transcript 960308 963241 . + . gene_id "ST04410"; transcript_id "YDR251W"; -chrIV Steinmetz_2013 transcript 963410 964526 . + . gene_id "ST04411"; transcript_id "YDR252W"; -chrIV Steinmetz_2013 transcript 965034 967009 . + . gene_id "ST04412"; transcript_id "YDR254W"; -chrIV Steinmetz_2013 transcript 968044 969767 . + . gene_id "ST04413"; transcript_id "SUT063"; -chrIV Steinmetz_2013 transcript 979513 980170 . + . gene_id "ST04414"; transcript_id "XUT_4F-449"; -chrIV Steinmetz_2013 transcript 993123 994148 . + . gene_id "ST04415"; transcript_id "YDR262W"; -chrIV Steinmetz_2013 transcript 998634 1000069 . + . gene_id "ST04416"; transcript_id "YDR265W"; -chrIV Steinmetz_2013 transcript 1003953 1005256 . + . gene_id "ST04417"; transcript_id "YDR268W"; -chrIV Steinmetz_2013 transcript 1005588 1008767 . + . gene_id "ST04418"; transcript_id "YDR270W"; -chrIV Steinmetz_2013 transcript 1008953 1009877 . + . gene_id "ST04419"; transcript_id "YDR272W"; -chrIV Steinmetz_2013 transcript 1010133 1011306 . + . gene_id "ST04420"; transcript_id "YDR273W"; -chrIV Steinmetz_2013 transcript 1011579 1013244 . + . gene_id "ST04421"; transcript_id "YDR275W"; -chrIV Steinmetz_2013 transcript 1014335 1016871 . + . gene_id "ST04422"; transcript_id "SUT065"; -chrIV Steinmetz_2013 transcript 1019290 1020441 . + . gene_id "ST04423"; transcript_id "YDR279W"; -chrIV Steinmetz_2013 transcript 1020639 1021768 . + . gene_id "ST04424"; transcript_id "YDR280W"; -chrIV Steinmetz_2013 transcript 1035963 1036959 . + . gene_id "ST04425"; transcript_id "YDR287W"; -chrIV Steinmetz_2013 transcript 1037189 1038155 . + . gene_id "ST04426"; transcript_id "YDR288W"; -chrIV Steinmetz_2013 transcript 1055159 1055979 . + . gene_id "ST04427"; transcript_id "YDR296W"; -chrIV Steinmetz_2013 transcript 1056520 1057770 . + . gene_id "ST04428"; transcript_id "YDR297W"; -chrIV Steinmetz_2013 transcript 1059575 1061325 . + . gene_id "ST04429"; transcript_id "YDR299W"; -chrIV Steinmetz_2013 transcript 1063293 1067552 . + . gene_id "ST04430"; transcript_id "YDR301W"; -chrIV Steinmetz_2013 transcript 1067688 1068463 . + . gene_id "ST04431"; transcript_id "YDR302W"; -chrIV Steinmetz_2013 transcript 1071491 1072065 . + . gene_id "ST04432"; transcript_id "XUT_4F-497"; -chrIV Steinmetz_2013 transcript 1072750 1073183 . + . gene_id "ST04433"; transcript_id "CUT078"; -chrIV Steinmetz_2013 transcript 1075806 1077994 . + . gene_id "ST04434"; transcript_id "YDR307W"; -chrIV Steinmetz_2013 transcript 1080791 1081112 . + . gene_id "ST04435"; transcript_id "XUT_4F-500"; -chrIV Steinmetz_2013 transcript 1080797 1081005 . + . gene_id "ST04436"; transcript_id "SUT066"; -chrIV Steinmetz_2013 transcript 1085040 1087095 . + . gene_id "ST04437"; transcript_id "YDR311W"; -chrIV Steinmetz_2013 transcript 1087549 1089041 . + . gene_id "ST04438"; transcript_id "YDR312W"; -chrIV Steinmetz_2013 transcript 1093740 1095257 . + . gene_id "ST04439"; transcript_id "YDR316W"; -chrIV Steinmetz_2013 transcript 1102133 1103509 . + . gene_id "ST04440"; transcript_id "YDR317W"; -chrIV Steinmetz_2013 transcript 1103742 1105085 . + . gene_id "ST04441"; transcript_id "YDR318W"; -chrIV Steinmetz_2013 transcript 1108671 1109952 . + . gene_id "ST04442"; transcript_id "YDR321W"; -chrIV Steinmetz_2013 transcript 1110563 1111798 . + . gene_id "ST04443"; transcript_id "YDR322W"; -chrIV Steinmetz_2013 transcript 1117109 1120330 . + . gene_id "ST04444"; transcript_id "YDR325W"; -chrIV Steinmetz_2013 transcript 1127813 1129581 . + . gene_id "ST04445"; transcript_id "YDR330W"; -chrIV Steinmetz_2013 transcript 1129567 1130957 . + . gene_id "ST04446"; transcript_id "YDR331W"; -chrIV Steinmetz_2013 transcript 1130976 1133149 . + . gene_id "ST04447"; transcript_id "YDR332W"; -chrIV Steinmetz_2013 transcript 1140811 1144954 . + . gene_id "ST04448"; transcript_id "YDR335W"; -chrIV Steinmetz_2013 transcript 1145069 1146097 . + . gene_id "ST04449"; transcript_id "YDR336W"; -chrIV Steinmetz_2013 transcript 1146270 1147231 . + . gene_id "ST04450"; transcript_id "YDR337W"; -chrIV Steinmetz_2013 transcript 1157118 1159044 . + . gene_id "ST04451"; transcript_id "SUT068"; -chrIV Steinmetz_2013 transcript 1162329 1162940 . + . gene_id "ST04452"; transcript_id "XUT_4F-524"; -chrIV Steinmetz_2013 transcript 1166700 1167028 . + . gene_id "ST04453"; transcript_id "SUT070"; -chrIV Steinmetz_2013 transcript 1169114 1170260 . + . gene_id "ST04454"; transcript_id "YDR347W"; -chrIV Steinmetz_2013 transcript 1172328 1172833 . + . gene_id "ST04455"; transcript_id "XUT_4F-531"; -chrIV Steinmetz_2013 transcript 1174530 1174863 . + . gene_id "ST04456"; transcript_id "SUT071"; -chrIV Steinmetz_2013 transcript 1178617 1181413 . + . gene_id "ST04457"; transcript_id "YDR351W"; -chrIV Steinmetz_2013 transcript 1181613 1182991 . + . gene_id "ST04458"; transcript_id "YDR352W"; -chrIV Steinmetz_2013 transcript 1183251 1184309 . + . gene_id "ST04459"; transcript_id "YDR353W"; -chrIV Steinmetz_2013 transcript 1184671 1185958 . + . gene_id "ST04460"; transcript_id "YDR354W"; -chrIV Steinmetz_2013 transcript 1186080 1189215 . + . gene_id "ST04461"; transcript_id "YDR356W"; -chrIV Steinmetz_2013 transcript 1190007 1191893 . + . gene_id "ST04462"; transcript_id "YDR358W"; -chrIV Steinmetz_2013 transcript 1196528 1197825 . + . gene_id "ST04463"; transcript_id "SUT072"; -chrIV Steinmetz_2013 transcript 1199007 1201372 . + . gene_id "ST04464"; transcript_id "YDR363W"; -chrIV Steinmetz_2013 transcript 1202106 1202577 . + . gene_id "ST04465"; transcript_id "YDR363W-A"; -chrIV Steinmetz_2013 transcript 1212805 1213657 . + . gene_id "ST04466"; transcript_id "YDR367W"; -chrIV Steinmetz_2013 transcript 1213853 1215004 . + . gene_id "ST04467"; transcript_id "YDR368W"; -chrIV Steinmetz_2013 transcript 1219353 1221086 . + . gene_id "ST04468"; transcript_id "YDR371W"; -chrIV Steinmetz_2013 transcript 1224736 1225202 . + . gene_id "ST04469"; transcript_id "YDR374W-A"; -chrIV Steinmetz_2013 transcript 1226759 1228375 . + . gene_id "ST04470"; transcript_id "YDR376W"; -chrIV Steinmetz_2013 transcript 1228544 1229205 . + . gene_id "ST04471"; transcript_id "YDR377W"; -chrIV Steinmetz_2013 transcript 1230091 1233274 . + . gene_id "ST04472"; transcript_id "YDR379W"; -chrIV Steinmetz_2013 transcript 1234113 1236253 . + . gene_id "ST04473"; transcript_id "YDR380W"; -chrIV Steinmetz_2013 transcript 1236551 1238196 . + . gene_id "ST04474"; transcript_id "YDR381W"; -chrIV Steinmetz_2013 transcript 1239411 1239969 . + . gene_id "ST04475"; transcript_id "YDR382W"; -chrIV Steinmetz_2013 transcript 1240068 1240959 . + . gene_id "ST04476"; transcript_id "CUT088"; -chrIV Steinmetz_2013 transcript 1242713 1243195 . + . gene_id "ST04477"; transcript_id "CUT089"; -chrIV Steinmetz_2013 transcript 1243203 1245910 . + . gene_id "ST04478"; transcript_id "YDR385W"; -chrIV Steinmetz_2013 transcript 1246063 1248091 . + . gene_id "ST04479"; transcript_id "YDR386W"; -chrIV Steinmetz_2013 transcript 1250135 1251755 . + . gene_id "ST04480"; transcript_id "YDR388W"; -chrIV Steinmetz_2013 transcript 1252015 1254685 . + . gene_id "ST04481"; transcript_id "YDR389W"; -chrIV Steinmetz_2013 transcript 1258655 1259839 . + . gene_id "ST04482"; transcript_id "YDR392W"; -chrIV Steinmetz_2013 transcript 1259875 1261384 . + . gene_id "ST04483"; transcript_id "YDR393W"; -chrIV Steinmetz_2013 transcript 1261559 1263054 . + . gene_id "ST04484"; transcript_id "YDR394W"; -chrIV Steinmetz_2013 transcript 1263208 1266255 . + . gene_id "ST04485"; transcript_id "YDR395W"; -chrIV Steinmetz_2013 transcript 1267017 1267427 . + . gene_id "ST04486"; transcript_id "SUT073"; -chrIV Steinmetz_2013 transcript 1267436 1269501 . + . gene_id "ST04487"; transcript_id "YDR398W"; -chrIV Steinmetz_2013 transcript 1269999 1270839 . + . gene_id "ST04488"; transcript_id "YDR399W"; -chrIV Steinmetz_2013 transcript 1272874 1274574 . + . gene_id "ST04489"; transcript_id "XUT_4F-582"; -chrIV Steinmetz_2013 transcript 1274552 1276417 . + . gene_id "ST04490"; transcript_id "YDR403W"; -chrIV Steinmetz_2013 transcript 1277593 1278545 . + . gene_id "ST04491"; transcript_id "YDR405W"; -chrIV Steinmetz_2013 transcript 1288242 1289134 . + . gene_id "ST04492"; transcript_id "XUT_4F-592"; -chrIV Steinmetz_2013 transcript 1294644 1295541 . + . gene_id "ST04493"; transcript_id "YDR412W"; -chrIV Steinmetz_2013 transcript 1298369 1301043 . + . gene_id "ST04494"; transcript_id "YDR416W"; -chrIV Steinmetz_2013 transcript 1301582 1302194 . + . gene_id "ST04495"; transcript_id "YDR418W"; -chrIV Steinmetz_2013 transcript 1303164 1305407 . + . gene_id "ST04496"; transcript_id "YDR419W"; -chrIV Steinmetz_2013 transcript 1311975 1314921 . + . gene_id "ST04497"; transcript_id "YDR421W"; -chrIV Steinmetz_2013 transcript 1319415 1319736 . + . gene_id "ST04498"; transcript_id "XUT_4F-605"; -chrIV Steinmetz_2013 transcript 1319471 1319736 . + . gene_id "ST04499"; transcript_id "CUT092"; -chrIV Steinmetz_2013 transcript 1320018 1322052 . + . gene_id "ST04500"; transcript_id "YDR425W"; -chrIV Steinmetz_2013 transcript 1322175 1323468 . + . gene_id "ST04501"; transcript_id "YDR427W"; -chrIV Steinmetz_2013 transcript 1331111 1332956 . + . gene_id "ST04502"; transcript_id "YDR434W"; -chrIV Steinmetz_2013 transcript 1334206 1334566 . + . gene_id "ST04503"; transcript_id "CUT094"; -chrIV Steinmetz_2013 transcript 1334568 1337115 . + . gene_id "ST04504"; transcript_id "YDR436W"; -chrIV Steinmetz_2013 transcript 1338211 1339486 . + . gene_id "ST04505"; transcript_id "YDR438W"; -chrIV Steinmetz_2013 transcript 1339589 1340819 . + . gene_id "ST04506"; transcript_id "YDR439W"; -chrIV Steinmetz_2013 transcript 1342406 1344344 . + . gene_id "ST04507"; transcript_id "YDR440W"; -chrIV Steinmetz_2013 transcript 1344354 1345236 . + . gene_id "ST04508"; transcript_id "XUT_4F-617"; -chrIV Steinmetz_2013 transcript 1345633 1346766 . + . gene_id "ST04509"; transcript_id "YDR442W"; -chrIV Steinmetz_2013 transcript 1350205 1352398 . + . gene_id "ST04510"; transcript_id "YDR444W"; -chrIV Steinmetz_2013 transcript 1356029 1357472 . + . gene_id "ST04511"; transcript_id "YDR448W"; -chrIV Steinmetz_2013 transcript 1359146 1359441 . + . gene_id "ST04512"; transcript_id "CUT095"; -chrIV Steinmetz_2013 transcript 1359902 1360913 . + . gene_id "ST04513"; transcript_id "YDR450W"; -chrIV Steinmetz_2013 transcript 1361035 1362370 . + . gene_id "ST04514"; transcript_id "XUT_4F-622"; -chrIV Steinmetz_2013 transcript 1362728 1365067 . + . gene_id "ST04515"; transcript_id "YDR452W"; -chrIV Steinmetz_2013 transcript 1367435 1369492 . + . gene_id "ST04516"; transcript_id "YDR456W"; -chrIV Steinmetz_2013 transcript 1383699 1384876 . + . gene_id "ST04517"; transcript_id "YDR460W"; -chrIV Steinmetz_2013 transcript 1385148 1385434 . + . gene_id "ST04518"; transcript_id "YDR461W"; -chrIV Steinmetz_2013 transcript 1386019 1386639 . + . gene_id "ST04519"; transcript_id "YDR462W"; -chrIV Steinmetz_2013 transcript 1386776 1388578 . + . gene_id "ST04520"; transcript_id "YDR463W"; -chrIV Steinmetz_2013 transcript 1395021 1397979 . + . gene_id "ST04521"; transcript_id "YDR466W"; -chrIV Steinmetz_2013 transcript 1398975 1399609 . + . gene_id "ST04522"; transcript_id "YDR469W"; -chrIV Steinmetz_2013 transcript 1401745 1402681 . + . gene_id "ST04523"; transcript_id "YDR471W"; -chrIV Steinmetz_2013 transcript 1403283 1404297 . + . gene_id "ST04524"; transcript_id "YDR472W"; -chrIV Steinmetz_2013 transcript 1406082 1408846 . + . gene_id "ST04525"; transcript_id "XUT_4F-642"; -chrIV Steinmetz_2013 transcript 1406088 1408347 . + . gene_id "ST04526"; transcript_id "SUT075"; -chrIV Steinmetz_2013 transcript 1410291 1411977 . + . gene_id "ST04527"; transcript_id "SUT076"; -chrIV Steinmetz_2013 transcript 1412079 1414411 . + . gene_id "ST04528"; transcript_id "YDR477W"; -chrIV Steinmetz_2013 transcript 1414557 1415246 . + . gene_id "ST04529"; transcript_id "YDR478W"; -chrIV Steinmetz_2013 transcript 1421131 1422597 . + . gene_id "ST04530"; transcript_id "YDR483W"; -chrIV Steinmetz_2013 transcript 1422721 1424772 . + . gene_id "ST04531"; transcript_id "YDR484W"; -chrIV Steinmetz_2013 transcript 1431003 1432311 . + . gene_id "ST04532"; transcript_id "YDR489W"; -chrIV Steinmetz_2013 transcript 1434770 1435943 . + . gene_id "ST04533"; transcript_id "YDR492W"; -chrIV Steinmetz_2013 transcript 1436116 1436690 . + . gene_id "ST04534"; transcript_id "YDR493W"; -chrIV Steinmetz_2013 transcript 1436897 1438087 . + . gene_id "ST04535"; transcript_id "YDR494W"; -chrIV Steinmetz_2013 transcript 1445758 1446959 . + . gene_id "ST04536"; transcript_id "XUT_4F-661"; -chrIV Steinmetz_2013 transcript 1447826 1450193 . + . gene_id "ST04537"; transcript_id "YDR499W"; -chrIV Steinmetz_2013 transcript 1451236 1453089 . + . gene_id "ST04538"; transcript_id "YDR501W"; -chrIV Steinmetz_2013 transcript 1456122 1456724 . + . gene_id "ST04539"; transcript_id "SUT078"; -chrIV Steinmetz_2013 transcript 1459755 1460585 . + . gene_id "ST04540"; transcript_id "SUT079"; -chrIV Steinmetz_2013 transcript 1466221 1466415 . + . gene_id "ST04541"; transcript_id "SUT080"; -chrIV Steinmetz_2013 transcript 1469315 1469847 . + . gene_id "ST04542"; transcript_id "YDR510W"; -chrIV Steinmetz_2013 transcript 1469992 1470501 . + . gene_id "ST04543"; transcript_id "YDR511W"; -chrIV Steinmetz_2013 transcript 1470995 1471530 . + . gene_id "ST04544"; transcript_id "YDR513W"; -chrIV Steinmetz_2013 transcript 1473202 1474847 . + . gene_id "ST04545"; transcript_id "YDR515W"; -chrIV Steinmetz_2013 transcript 1477166 1478460 . + . gene_id "ST04546"; transcript_id "YDR517W"; -chrIV Steinmetz_2013 transcript 1478583 1480211 . + . gene_id "ST04547"; transcript_id "YDR518W"; -chrIV Steinmetz_2013 transcript 1480417 1481057 . + . gene_id "ST04548"; transcript_id "YDR519W"; -chrIV Steinmetz_2013 transcript 1483726 1484439 . + . gene_id "ST04549"; transcript_id "SUT081"; -chrIV Steinmetz_2013 transcript 1483732 1485390 . + . gene_id "ST04550"; transcript_id "XUT_4F-689"; -chrIV Steinmetz_2013 transcript 1490568 1491062 . + . gene_id "ST04551"; transcript_id "YDR525W-A"; -chrIV Steinmetz_2013 transcript 1491063 1492491 . + . gene_id "ST04552"; transcript_id "YDR527W"; -chrIV Steinmetz_2013 transcript 1494268 1495996 . + . gene_id "ST04553"; transcript_id "YDR528W"; -chrIV Steinmetz_2013 transcript 1498182 1499413 . + . gene_id "ST04554"; transcript_id "YDR531W"; -chrIV Steinmetz_2013 transcript 1500700 1501049 . + . gene_id "ST04555"; transcript_id "SUT083"; -chrIV Steinmetz_2013 transcript 1500700 1502359 . + . gene_id "ST04556"; transcript_id "XUT_4F-700"; -chrIV Steinmetz_2013 transcript 1507049 1507991 . + . gene_id "ST04557"; transcript_id "XUT_4F-703"; -chrIV Steinmetz_2013 transcript 1507977 1509860 . + . gene_id "ST04558"; transcript_id "YDR536W"; -chrIV Steinmetz_2013 transcript 1510841 1511919 . + . gene_id "ST04559"; transcript_id "YDR538W"; -chrIV Steinmetz_2013 transcript 1512062 1513665 . + . gene_id "ST04560"; transcript_id "YDR539W"; -chrIV Steinmetz_2013 transcript 1516586 1517745 . + . gene_id "ST04561"; transcript_id "XUT_4F-707"; -chrIV Steinmetz_2013 transcript 1520825 1522506 . + . gene_id "ST04562"; transcript_id "XUT_4F-711"; -chrIV Steinmetz_2013 transcript 1521138 1522465 . + . gene_id "ST04563"; transcript_id "SUT085"; -chrV Steinmetz_2013 transcript 7129 7566 . - . gene_id "ST04564"; transcript_id "YEL073C"; -chrV Steinmetz_2013 transcript 8431 9772 . - . gene_id "ST04565"; transcript_id "SUT500"; -chrV Steinmetz_2013 transcript 10257 11314 . - . gene_id "ST04566"; transcript_id "XUT_5R-12"; -chrV Steinmetz_2013 transcript 10552 11309 . - . gene_id "ST04567"; transcript_id "SUT501"; -chrV Steinmetz_2013 transcript 14647 15004 . - . gene_id "ST04568"; transcript_id "SUT502"; -chrV Steinmetz_2013 transcript 25494 26006 . - . gene_id "ST04569"; transcript_id "YEL068C"; -chrV Steinmetz_2013 transcript 29469 31268 . - . gene_id "ST04570"; transcript_id "YEL064C"; -chrV Steinmetz_2013 transcript 31403 33697 . - . gene_id "ST04571"; transcript_id "YEL063C"; -chrV Steinmetz_2013 transcript 36410 39660 . - . gene_id "ST04572"; transcript_id "YEL061C"; -chrV Steinmetz_2013 transcript 39800 42008 . - . gene_id "ST04573"; transcript_id "YEL060C"; -chrV Steinmetz_2013 transcript 42347 42701 . - . gene_id "ST04574"; transcript_id "YEL059C-A"; -chrV Steinmetz_2013 transcript 44914 45798 . - . gene_id "ST04575"; transcript_id "YEL057C"; -chrV Steinmetz_2013 transcript 48399 51594 . - . gene_id "ST04576"; transcript_id "YEL055C"; -chrV Steinmetz_2013 transcript 52479 53245 . - . gene_id "ST04577"; transcript_id "YEL054C"; -chrV Steinmetz_2013 transcript 53818 56185 . - . gene_id "ST04578"; transcript_id "YEL053C"; -chrV Steinmetz_2013 transcript 59499 60902 . - . gene_id "ST04579"; transcript_id "YEL050C"; -chrV Steinmetz_2013 transcript 62539 64212 . - . gene_id "ST04580"; transcript_id "XUT_5R-36"; -chrV Steinmetz_2013 transcript 64168 65172 . - . gene_id "ST04581"; transcript_id "YEL048C"; -chrV Steinmetz_2013 transcript 62883 63742 . - . gene_id "ST04582"; transcript_id "CUT546"; -chrV Steinmetz_2013 transcript 67043 68815 . - . gene_id "ST04583"; transcript_id "YEL046C"; -chrV Steinmetz_2013 transcript 75767 77344 . - . gene_id "ST04584"; transcript_id "XUT_5R-40"; -chrV Steinmetz_2013 transcript 79525 80158 . - . gene_id "ST04585"; transcript_id "YEL039C"; -chrV Steinmetz_2013 transcript 81258 82762 . - . gene_id "ST04586"; transcript_id "YEL037C"; -chrV Steinmetz_2013 transcript 82966 84697 . - . gene_id "ST04587"; transcript_id "YEL036C"; -chrV Steinmetz_2013 transcript 96494 97861 . - . gene_id "ST04588"; transcript_id "YEL029C"; -chrV Steinmetz_2013 transcript 108378 111112 . - . gene_id "ST04589"; transcript_id "YEL023C"; -chrV Steinmetz_2013 transcript 122331 122968 . - . gene_id "ST04590"; transcript_id "YEL017C-A"; -chrV Steinmetz_2013 transcript 124645 126401 . - . gene_id "ST04591"; transcript_id "YEL016C"; -chrV Steinmetz_2013 transcript 138823 140334 . - . gene_id "ST04592"; transcript_id "YEL009C"; -chrV Steinmetz_2013 transcript 140310 140867 . - . gene_id "ST04593"; transcript_id "YEL008C-A"; -chrV Steinmetz_2013 transcript 145834 146795 . - . gene_id "ST04594"; transcript_id "YEL005C"; -chrV Steinmetz_2013 transcript 148633 150064 . - . gene_id "ST04595"; transcript_id "YEL002C"; -chrV Steinmetz_2013 transcript 150199 151017 . - . gene_id "ST04596"; transcript_id "YEL001C"; -chrV Steinmetz_2013 transcript 151221 151843 . - . gene_id "ST04597"; transcript_id "SUT505"; -chrV Steinmetz_2013 transcript 151481 151843 . - . gene_id "ST04598"; transcript_id "XUT_5R-75"; -chrV Steinmetz_2013 transcript 155994 156500 . - . gene_id "ST04599"; transcript_id "XUT_5R-76"; -chrV Steinmetz_2013 transcript 156118 156500 . - . gene_id "ST04600"; transcript_id "SUT506"; -chrV Steinmetz_2013 transcript 157654 159149 . - . gene_id "ST04601"; transcript_id "YER003C"; -chrV Steinmetz_2013 transcript 161341 162446 . - . gene_id "ST04602"; transcript_id "SUT507"; -chrV Steinmetz_2013 transcript 166148 166925 . - . gene_id "ST04603"; transcript_id "YER007C-A"; -chrV Steinmetz_2013 transcript 172545 173359 . - . gene_id "ST04604"; transcript_id "YER010C"; -chrV Steinmetz_2013 transcript 186942 188052 . - . gene_id "ST04605"; transcript_id "SUT509"; -chrV Steinmetz_2013 transcript 189340 191884 . - . gene_id "ST04606"; transcript_id "YER017C"; -chrV Steinmetz_2013 transcript 191885 192679 . - . gene_id "ST04607"; transcript_id "YER018C"; -chrV Steinmetz_2013 transcript 194218 194584 . - . gene_id "ST04608"; transcript_id "YER019C-A"; -chrV Steinmetz_2013 transcript 207515 208505 . - . gene_id "ST04609"; transcript_id "YER026C"; -chrV Steinmetz_2013 transcript 208732 210311 . - . gene_id "ST04610"; transcript_id "YER027C"; -chrV Steinmetz_2013 transcript 210636 211944 . - . gene_id "ST04611"; transcript_id "YER028C"; -chrV Steinmetz_2013 transcript 212494 213243 . - . gene_id "ST04612"; transcript_id "YER029C"; -chrV Steinmetz_2013 transcript 213932 214781 . - . gene_id "ST04613"; transcript_id "YER031C"; -chrV Steinmetz_2013 transcript 223263 225232 . - . gene_id "ST04614"; transcript_id "YER036C"; -chrV Steinmetz_2013 transcript 226104 228262 . - . gene_id "ST04615"; transcript_id "YER038C"; -chrV Steinmetz_2013 transcript 235535 237143 . - . gene_id "ST04616"; transcript_id "YER043C"; -chrV Steinmetz_2013 transcript 237445 238055 . - . gene_id "ST04617"; transcript_id "YER044C"; -chrV Steinmetz_2013 transcript 239884 241714 . - . gene_id "ST04618"; transcript_id "YER045C"; -chrV Steinmetz_2013 transcript 241794 242527 . - . gene_id "ST04619"; transcript_id "SUT513"; -chrV Steinmetz_2013 transcript 241895 242555 . - . gene_id "ST04620"; transcript_id "XUT_5R-111"; -chrV Steinmetz_2013 transcript 246861 248233 . - . gene_id "ST04621"; transcript_id "YER048C"; -chrV Steinmetz_2013 transcript 253859 254434 . - . gene_id "ST04622"; transcript_id "YER050C"; -chrV Steinmetz_2013 transcript 256263 258040 . - . gene_id "ST04623"; transcript_id "YER052C"; -chrV Steinmetz_2013 transcript 258594 259737 . - . gene_id "ST04624"; transcript_id "YER053C"; -chrV Steinmetz_2013 transcript 260553 261088 . - . gene_id "ST04625"; transcript_id "YER053C-A"; -chrV Steinmetz_2013 transcript 261780 264128 . - . gene_id "ST04626"; transcript_id "YER054C"; -chrV Steinmetz_2013 transcript 264760 265811 . - . gene_id "ST04627"; transcript_id "YER055C"; -chrV Steinmetz_2013 transcript 266391 268200 . - . gene_id "ST04628"; transcript_id "YER056C"; -chrV Steinmetz_2013 transcript 268201 269343 . - . gene_id "ST04629"; transcript_id "CUT554"; -chrV Steinmetz_2013 transcript 268368 269043 . - . gene_id "ST04630"; transcript_id "XUT_5R-126"; -chrV Steinmetz_2013 transcript 269344 270203 . - . gene_id "ST04631"; transcript_id "YER056C-A"; -chrV Steinmetz_2013 transcript 270644 271169 . - . gene_id "ST04632"; transcript_id "YER057C"; -chrV Steinmetz_2013 transcript 278236 279666 . - . gene_id "ST04633"; transcript_id "YER061C"; -chrV Steinmetz_2013 transcript 279755 280823 . - . gene_id "ST04634"; transcript_id "YER062C"; -chrV Steinmetz_2013 transcript 281569 282541 . - . gene_id "ST04635"; transcript_id "CUT557"; -chrV Steinmetz_2013 transcript 282467 284312 . - . gene_id "ST04636"; transcript_id "YER064C"; -chrV Steinmetz_2013 transcript 285119 287182 . - . gene_id "ST04637"; transcript_id "YER065C"; -chrV Steinmetz_2013 transcript 290878 291550 . - . gene_id "ST04638"; transcript_id "XUT_5R-139"; -chrV Steinmetz_2013 transcript 301703 302336 . - . gene_id "ST04639"; transcript_id "YER071C"; -chrV Steinmetz_2013 transcript 302660 303161 . - . gene_id "ST04640"; transcript_id "XUT_5R-144"; -chrV Steinmetz_2013 transcript 308294 311361 . - . gene_id "ST04641"; transcript_id "YER075C"; -chrV Steinmetz_2013 transcript 312439 313638 . - . gene_id "ST04642"; transcript_id "YER076C"; -chrV Steinmetz_2013 transcript 316723 318550 . - . gene_id "ST04643"; transcript_id "YER078C"; -chrV Steinmetz_2013 transcript 318784 319550 . - . gene_id "ST04644"; transcript_id "XUT_5R-151"; -chrV Steinmetz_2013 transcript 324180 325990 . - . gene_id "ST04645"; transcript_id "YER082C"; -chrV Steinmetz_2013 transcript 326130 327049 . - . gene_id "ST04646"; transcript_id "YER083C"; -chrV Steinmetz_2013 transcript 327500 328218 . - . gene_id "ST04647"; transcript_id "YER085C"; -chrV Steinmetz_2013 transcript 332374 332870 . - . gene_id "ST04648"; transcript_id "YER087C-B"; -chrV Steinmetz_2013 transcript 333036 335277 . - . gene_id "ST04649"; transcript_id "YER088C"; -chrV Steinmetz_2013 transcript 339639 342237 . - . gene_id "ST04650"; transcript_id "YER091C"; -chrV Steinmetz_2013 transcript 343262 347668 . - . gene_id "ST04651"; transcript_id "YER093C"; -chrV Steinmetz_2013 transcript 347782 348421 . - . gene_id "ST04652"; transcript_id "YER093C-A"; -chrV Steinmetz_2013 transcript 348575 349436 . - . gene_id "ST04653"; transcript_id "YER094C"; -chrV Steinmetz_2013 transcript 358031 359080 . - . gene_id "ST04654"; transcript_id "YER099C"; -chrV Steinmetz_2013 transcript 360382 361828 . - . gene_id "ST04655"; transcript_id "YER101C"; -chrV Steinmetz_2013 transcript 366498 367047 . - . gene_id "ST04656"; transcript_id "XUT_5R-168"; -chrV Steinmetz_2013 transcript 367714 372032 . - . gene_id "ST04657"; transcript_id "YER105C"; -chrV Steinmetz_2013 transcript 373341 374738 . - . gene_id "ST04658"; transcript_id "YER107C"; -chrV Steinmetz_2013 transcript 374939 377805 . - . gene_id "ST04659"; transcript_id "YER109C"; -chrV Steinmetz_2013 transcript 378610 382215 . - . gene_id "ST04660"; transcript_id "YER110C"; -chrV Steinmetz_2013 transcript 387786 390094 . - . gene_id "ST04661"; transcript_id "YER113C"; -chrV Steinmetz_2013 transcript 390389 394010 . - . gene_id "ST04662"; transcript_id "YER114C"; -chrV Steinmetz_2013 transcript 394230 395084 . - . gene_id "ST04663"; transcript_id "YER115C"; -chrV Steinmetz_2013 transcript 394982 396272 . - . gene_id "ST04664"; transcript_id "YER116C"; -chrV Steinmetz_2013 transcript 397773 399247 . - . gene_id "ST04665"; transcript_id "YER118C"; -chrV Steinmetz_2013 transcript 399398 400862 . - . gene_id "ST04666"; transcript_id "YER119C"; -chrV Steinmetz_2013 transcript 401880 402303 . - . gene_id "ST04667"; transcript_id "SUT516"; -chrV Steinmetz_2013 transcript 402728 404433 . - . gene_id "ST04668"; transcript_id "YER122C"; -chrV Steinmetz_2013 transcript 407001 409103 . - . gene_id "ST04669"; transcript_id "YER124C"; -chrV Steinmetz_2013 transcript 413193 414206 . - . gene_id "ST04670"; transcript_id "YER126C"; -chrV Steinmetz_2013 transcript 420903 422513 . - . gene_id "ST04671"; transcript_id "YER130C"; -chrV Steinmetz_2013 transcript 434982 435622 . - . gene_id "ST04672"; transcript_id "XUT_5R-194"; -chrV Steinmetz_2013 transcript 437022 437849 . - . gene_id "ST04673"; transcript_id "YER134C"; -chrV Steinmetz_2013 transcript 441212 441839 . - . gene_id "ST04674"; transcript_id "YER137C"; -chrV Steinmetz_2013 transcript 449837 451346 . - . gene_id "ST04675"; transcript_id "YER139C"; -chrV Steinmetz_2013 transcript 455059 456064 . - . gene_id "ST04676"; transcript_id "YER142C"; -chrV Steinmetz_2013 transcript 457689 460232 . - . gene_id "ST04677"; transcript_id "YER144C"; -chrV Steinmetz_2013 transcript 460426 461761 . - . gene_id "ST04678"; transcript_id "YER145C"; -chrV Steinmetz_2013 transcript 462965 464908 . - . gene_id "ST04679"; transcript_id "YER147C"; -chrV Steinmetz_2013 transcript 466130 467521 . - . gene_id "ST04680"; transcript_id "YER149C"; -chrV Steinmetz_2013 transcript 469617 472498 . - . gene_id "ST04681"; transcript_id "YER151C"; -chrV Steinmetz_2013 transcript 472605 474019 . - . gene_id "ST04682"; transcript_id "YER152C"; -chrV Steinmetz_2013 transcript 483211 484357 . - . gene_id "ST04683"; transcript_id "YER156C"; -chrV Steinmetz_2013 transcript 488724 490858 . - . gene_id "ST04684"; transcript_id "YER158C"; -chrV Steinmetz_2013 transcript 491383 492141 . - . gene_id "ST04685"; transcript_id "YER159C"; -chrV Steinmetz_2013 transcript 499076 500386 . - . gene_id "ST04686"; transcript_id "YER161C"; -chrV Steinmetz_2013 transcript 500520 502929 . - . gene_id "ST04687"; transcript_id "YER162C"; -chrV Steinmetz_2013 transcript 502958 503790 . - . gene_id "ST04688"; transcript_id "YER163C"; -chrV Steinmetz_2013 transcript 509809 510215 . - . gene_id "ST04689"; transcript_id "SUT517"; -chrV Steinmetz_2013 transcript 520934 522724 . - . gene_id "ST04690"; transcript_id "YER168C"; -chrV Steinmetz_2013 transcript 538323 539282 . - . gene_id "ST04691"; transcript_id "YER174C"; -chrV Steinmetz_2013 transcript 539234 540382 . - . gene_id "ST04692"; transcript_id "YER175C"; -chrV Steinmetz_2013 transcript 540763 541456 . - . gene_id "ST04693"; transcript_id "SUT520"; -chrV Steinmetz_2013 transcript 548451 549249 . - . gene_id "ST04694"; transcript_id "SUT521"; -chrV Steinmetz_2013 transcript 549667 550547 . - . gene_id "ST04695"; transcript_id "YER180C"; -chrV Steinmetz_2013 transcript 550778 551170 . - . gene_id "ST04696"; transcript_id "YER180C-A"; -chrV Steinmetz_2013 transcript 551422 552405 . - . gene_id "ST04697"; transcript_id "YER181C"; -chrV Steinmetz_2013 transcript 553242 553970 . - . gene_id "ST04698"; transcript_id "YER183C"; -chrV Steinmetz_2013 transcript 556085 558754 . - . gene_id "ST04699"; transcript_id "YER184C"; -chrV Steinmetz_2013 transcript 560329 562810 . - . gene_id "ST04700"; transcript_id "YER186C"; -chrV Steinmetz_2013 transcript 11548 11986 . + . gene_id "ST04701"; transcript_id "SUT087"; -chrV Steinmetz_2013 transcript 13590 14724 . + . gene_id "ST04702"; transcript_id "YEL072W"; -chrV Steinmetz_2013 transcript 16319 17937 . + . gene_id "ST04703"; transcript_id "YEL071W"; -chrV Steinmetz_2013 transcript 19589 21229 . + . gene_id "ST04704"; transcript_id "YEL070W"; -chrV Steinmetz_2013 transcript 21402 24757 . + . gene_id "ST04705"; transcript_id "XUT_5F-7"; -chrV Steinmetz_2013 transcript 26642 27283 . + . gene_id "ST04706"; transcript_id "YEL066W"; -chrV Steinmetz_2013 transcript 27626 29618 . + . gene_id "ST04707"; transcript_id "YEL065W"; -chrV Steinmetz_2013 transcript 34394 36393 . + . gene_id "ST04708"; transcript_id "YEL062W"; -chrV Steinmetz_2013 transcript 43236 44999 . + . gene_id "ST04709"; transcript_id "YEL058W"; -chrV Steinmetz_2013 transcript 45182 45929 . + . gene_id "ST04710"; transcript_id "CUT105"; -chrV Steinmetz_2013 transcript 47130 48483 . + . gene_id "ST04711"; transcript_id "YEL056W"; -chrV Steinmetz_2013 transcript 56536 58166 . + . gene_id "ST04712"; transcript_id "YEL052W"; -chrV Steinmetz_2013 transcript 58331 59248 . + . gene_id "ST04713"; transcript_id "YEL051W"; -chrV Steinmetz_2013 transcript 63373 64244 . + . gene_id "ST04714"; transcript_id "YEL049W"; -chrV Steinmetz_2013 transcript 69751 70371 . + . gene_id "ST04715"; transcript_id "YEL044W"; -chrV Steinmetz_2013 transcript 70441 73443 . + . gene_id "ST04716"; transcript_id "YEL043W"; -chrV Steinmetz_2013 transcript 73569 75471 . + . gene_id "ST04717"; transcript_id "YEL042W"; -chrV Steinmetz_2013 transcript 75837 77685 . + . gene_id "ST04718"; transcript_id "YEL041W"; -chrV Steinmetz_2013 transcript 78032 79555 . + . gene_id "ST04719"; transcript_id "YEL040W"; -chrV Steinmetz_2013 transcript 80443 81196 . + . gene_id "ST04720"; transcript_id "YEL038W"; -chrV Steinmetz_2013 transcript 85623 86176 . + . gene_id "ST04721"; transcript_id "YEL034W"; -chrV Steinmetz_2013 transcript 86886 90036 . + . gene_id "ST04722"; transcript_id "YEL032W"; -chrV Steinmetz_2013 transcript 90227 94007 . + . gene_id "ST04723"; transcript_id "YEL031W"; -chrV Steinmetz_2013 transcript 98074 99663 . + . gene_id "ST04724"; transcript_id "YEL028W"; -chrV Steinmetz_2013 transcript 100706 101504 . + . gene_id "ST04725"; transcript_id "YEL027W"; -chrV Steinmetz_2013 transcript 101853 102394 . + . gene_id "ST04726"; transcript_id "YEL026W"; -chrV Steinmetz_2013 transcript 107159 108307 . + . gene_id "ST04727"; transcript_id "YEL024W"; -chrV Steinmetz_2013 transcript 111354 115874 . + . gene_id "ST04728"; transcript_id "YEL022W"; -chrV Steinmetz_2013 transcript 116134 117051 . + . gene_id "ST04729"; transcript_id "YEL021W"; -chrV Steinmetz_2013 transcript 117160 117566 . + . gene_id "ST04730"; transcript_id "YEL020W-A"; -chrV Steinmetz_2013 transcript 121467 122392 . + . gene_id "ST04731"; transcript_id "YEL018W"; -chrV Steinmetz_2013 transcript 123647 124761 . + . gene_id "ST04732"; transcript_id "YEL017W"; -chrV Steinmetz_2013 transcript 126596 128338 . + . gene_id "ST04733"; transcript_id "YEL015W"; -chrV Steinmetz_2013 transcript 128576 131010 . + . gene_id "ST04734"; transcript_id "YEL013W"; -chrV Steinmetz_2013 transcript 131677 132660 . + . gene_id "ST04735"; transcript_id "YEL012W"; -chrV Steinmetz_2013 transcript 133089 135346 . + . gene_id "ST04736"; transcript_id "YEL011W"; -chrV Steinmetz_2013 transcript 137107 138552 . + . gene_id "ST04737"; transcript_id "XUT_5F-62"; -chrV Steinmetz_2013 transcript 140400 141261 . + . gene_id "ST04738"; transcript_id "YEL008W"; -chrV Steinmetz_2013 transcript 144270 145706 . + . gene_id "ST04739"; transcript_id "YEL006W"; -chrV Steinmetz_2013 transcript 146927 148091 . + . gene_id "ST04740"; transcript_id "YEL004W"; -chrV Steinmetz_2013 transcript 148157 148737 . + . gene_id "ST04741"; transcript_id "YEL003W"; -chrV Steinmetz_2013 transcript 153471 155912 . + . gene_id "ST04742"; transcript_id "YER001W"; -chrV Steinmetz_2013 transcript 156754 157592 . + . gene_id "ST04743"; transcript_id "YER002W"; -chrV Steinmetz_2013 transcript 159572 160536 . + . gene_id "ST04744"; transcript_id "YER004W"; -chrV Steinmetz_2013 transcript 160509 162553 . + . gene_id "ST04745"; transcript_id "YER005W"; -chrV Steinmetz_2013 transcript 162684 164345 . + . gene_id "ST04746"; transcript_id "YER006W"; -chrV Steinmetz_2013 transcript 164506 166227 . + . gene_id "ST04747"; transcript_id "YER007W"; -chrV Steinmetz_2013 transcript 167014 167750 . + . gene_id "ST04748"; transcript_id "XUT_5F-75"; -chrV Steinmetz_2013 transcript 172081 172656 . + . gene_id "ST04749"; transcript_id "YER009W"; -chrV Steinmetz_2013 transcript 173503 173795 . + . gene_id "ST04750"; transcript_id "SUT089"; -chrV Steinmetz_2013 transcript 175194 176090 . + . gene_id "ST04751"; transcript_id "YER011W"; -chrV Steinmetz_2013 transcript 177774 178560 . + . gene_id "ST04752"; transcript_id "YER012W"; -chrV Steinmetz_2013 transcript 182546 184307 . + . gene_id "ST04753"; transcript_id "YER014W"; -chrV Steinmetz_2013 transcript 184519 187028 . + . gene_id "ST04754"; transcript_id "YER015W"; -chrV Steinmetz_2013 transcript 188257 189424 . + . gene_id "ST04755"; transcript_id "YER016W"; -chrV Steinmetz_2013 transcript 192417 194311 . + . gene_id "ST04756"; transcript_id "YER019W"; -chrV Steinmetz_2013 transcript 195105 196688 . + . gene_id "ST04757"; transcript_id "YER020W"; -chrV Steinmetz_2013 transcript 196917 198645 . + . gene_id "ST04758"; transcript_id "YER021W"; -chrV Steinmetz_2013 transcript 198791 200974 . + . gene_id "ST04759"; transcript_id "YER022W"; -chrV Steinmetz_2013 transcript 201051 202005 . + . gene_id "ST04760"; transcript_id "YER023W"; -chrV Steinmetz_2013 transcript 202160 205082 . + . gene_id "ST04761"; transcript_id "YER024W"; -chrV Steinmetz_2013 transcript 205193 207092 . + . gene_id "ST04762"; transcript_id "YER025W"; -chrV Steinmetz_2013 transcript 210474 210739 . + . gene_id "ST04763"; transcript_id "XUT_5F-98"; -chrV Steinmetz_2013 transcript 213424 214018 . + . gene_id "ST04764"; transcript_id "YER030W"; -chrV Steinmetz_2013 transcript 215007 217890 . + . gene_id "ST04765"; transcript_id "YER032W"; -chrV Steinmetz_2013 transcript 221828 222599 . + . gene_id "ST04766"; transcript_id "YER034W"; -chrV Steinmetz_2013 transcript 222564 223215 . + . gene_id "ST04767"; transcript_id "YER035W"; -chrV Steinmetz_2013 transcript 225866 227074 . + . gene_id "ST04768"; transcript_id "YER037W"; -chrV Steinmetz_2013 transcript 228379 229356 . + . gene_id "ST04769"; transcript_id "YER038W-A"; -chrV Steinmetz_2013 transcript 229713 232249 . + . gene_id "ST04770"; transcript_id "YER040W"; -chrV Steinmetz_2013 transcript 232379 234908 . + . gene_id "ST04771"; transcript_id "YER041W"; -chrV Steinmetz_2013 transcript 234929 235558 . + . gene_id "ST04772"; transcript_id "YER042W"; -chrV Steinmetz_2013 transcript 242514 243665 . + . gene_id "ST04773"; transcript_id "YER046W"; -chrV Steinmetz_2013 transcript 250637 251336 . + . gene_id "ST04774"; transcript_id "YER048W-A"; -chrV Steinmetz_2013 transcript 251646 253754 . + . gene_id "ST04775"; transcript_id "YER049W"; -chrV Steinmetz_2013 transcript 254640 256229 . + . gene_id "ST04776"; transcript_id "YER051W"; -chrV Steinmetz_2013 transcript 259835 260639 . + . gene_id "ST04777"; transcript_id "XUT_5F-125"; -chrV Steinmetz_2013 transcript 261962 262656 . + . gene_id "ST04778"; transcript_id "CUT110"; -chrV Steinmetz_2013 transcript 268947 269424 . + . gene_id "ST04779"; transcript_id "SUT091"; -chrV Steinmetz_2013 transcript 270693 271615 . + . gene_id "ST04780"; transcript_id "SUT092"; -chrV Steinmetz_2013 transcript 271736 272239 . + . gene_id "ST04781"; transcript_id "YER058W"; -chrV Steinmetz_2013 transcript 272442 273958 . + . gene_id "ST04782"; transcript_id "YER059W"; -chrV Steinmetz_2013 transcript 274438 276283 . + . gene_id "ST04783"; transcript_id "YER060W"; -chrV Steinmetz_2013 transcript 279882 280873 . + . gene_id "ST04784"; transcript_id "XUT_5F-136"; -chrV Steinmetz_2013 transcript 281649 282512 . + . gene_id "ST04785"; transcript_id "YER063W"; -chrV Steinmetz_2013 transcript 289350 290944 . + . gene_id "ST04786"; transcript_id "YER066W"; -chrV Steinmetz_2013 transcript 291990 292641 . + . gene_id "ST04787"; transcript_id "YER067W"; -chrV Steinmetz_2013 transcript 292983 294911 . + . gene_id "ST04788"; transcript_id "YER068W"; -chrV Steinmetz_2013 transcript 295346 298120 . + . gene_id "ST04789"; transcript_id "YER069W"; -chrV Steinmetz_2013 transcript 298911 301822 . + . gene_id "ST04790"; transcript_id "YER070W"; -chrV Steinmetz_2013 transcript 302788 303341 . + . gene_id "ST04791"; transcript_id "YER072W"; -chrV Steinmetz_2013 transcript 303952 305865 . + . gene_id "ST04792"; transcript_id "YER073W"; -chrV Steinmetz_2013 transcript 306297 307301 . + . gene_id "ST04793"; transcript_id "YER074W"; -chrV Steinmetz_2013 transcript 307642 308196 . + . gene_id "ST04794"; transcript_id "YER074W-A"; -chrV Steinmetz_2013 transcript 318843 319681 . + . gene_id "ST04795"; transcript_id "YER079W"; -chrV Steinmetz_2013 transcript 319932 321945 . + . gene_id "ST04796"; transcript_id "YER080W"; -chrV Steinmetz_2013 transcript 322658 324278 . + . gene_id "ST04797"; transcript_id "YER081W"; -chrV Steinmetz_2013 transcript 328438 330346 . + . gene_id "ST04798"; transcript_id "YER086W"; -chrV Steinmetz_2013 transcript 330538 332465 . + . gene_id "ST04799"; transcript_id "YER087W"; -chrV Steinmetz_2013 transcript 333090 336115 . + . gene_id "ST04800"; transcript_id "YER088W-B"; -chrV Steinmetz_2013 transcript 334632 335959 . + . gene_id "ST04801"; transcript_id "XUT_5F-166"; -chrV Steinmetz_2013 transcript 336639 337629 . + . gene_id "ST04802"; transcript_id "XUT_5F-171"; -chrV Steinmetz_2013 transcript 337882 339576 . + . gene_id "ST04803"; transcript_id "YER090W"; -chrV Steinmetz_2013 transcript 342852 343487 . + . gene_id "ST04804"; transcript_id "YER092W"; -chrV Steinmetz_2013 transcript 349913 351417 . + . gene_id "ST04805"; transcript_id "YER095W"; -chrV Steinmetz_2013 transcript 351601 353424 . + . gene_id "ST04806"; transcript_id "YER096W"; -chrV Steinmetz_2013 transcript 353739 354397 . + . gene_id "ST04807"; transcript_id "XUT_5F-180"; -chrV Steinmetz_2013 transcript 359285 360406 . + . gene_id "ST04808"; transcript_id "YER100W"; -chrV Steinmetz_2013 transcript 362714 363844 . + . gene_id "ST04809"; transcript_id "YER102W"; -chrV Steinmetz_2013 transcript 364585 366645 . + . gene_id "ST04810"; transcript_id "YER103W"; -chrV Steinmetz_2013 transcript 366784 367808 . + . gene_id "ST04811"; transcript_id "YER104W"; -chrV Steinmetz_2013 transcript 377969 378696 . + . gene_id "ST04812"; transcript_id "SUT096"; -chrV Steinmetz_2013 transcript 387131 387888 . + . gene_id "ST04813"; transcript_id "YER112W"; -chrV Steinmetz_2013 transcript 396749 397716 . + . gene_id "ST04814"; transcript_id "YER117W"; -chrV Steinmetz_2013 transcript 399438 400987 . + . gene_id "ST04815"; transcript_id "XUT_5F-195"; -chrV Steinmetz_2013 transcript 401101 401971 . + . gene_id "ST04816"; transcript_id "YER120W"; -chrV Steinmetz_2013 transcript 402300 402835 . + . gene_id "ST04817"; transcript_id "YER121W"; -chrV Steinmetz_2013 transcript 404625 406766 . + . gene_id "ST04818"; transcript_id "YER123W"; -chrV Steinmetz_2013 transcript 409685 413011 . + . gene_id "ST04819"; transcript_id "YER125W"; -chrV Steinmetz_2013 transcript 414460 415673 . + . gene_id "ST04820"; transcript_id "YER127W"; -chrV Steinmetz_2013 transcript 415858 416622 . + . gene_id "ST04821"; transcript_id "YER128W"; -chrV Steinmetz_2013 transcript 422181 422613 . + . gene_id "ST04822"; transcript_id "CUT116"; -chrV Steinmetz_2013 transcript 423536 424431 . + . gene_id "ST04823"; transcript_id "YER131W"; -chrV Steinmetz_2013 transcript 432426 434396 . + . gene_id "ST04824"; transcript_id "YER133W"; -chrV Steinmetz_2013 transcript 439541 441295 . + . gene_id "ST04825"; transcript_id "YER136W"; -chrV Steinmetz_2013 transcript 451521 453373 . + . gene_id "ST04826"; transcript_id "YER140W"; -chrV Steinmetz_2013 transcript 453429 455158 . + . gene_id "ST04827"; transcript_id "YER141W"; -chrV Steinmetz_2013 transcript 456249 457789 . + . gene_id "ST04828"; transcript_id "YER143W"; -chrV Steinmetz_2013 transcript 461106 461896 . + . gene_id "ST04829"; transcript_id "XUT_5F-218"; -chrV Steinmetz_2013 transcript 462539 462951 . + . gene_id "ST04830"; transcript_id "YER146W"; -chrV Steinmetz_2013 transcript 465110 466042 . + . gene_id "ST04831"; transcript_id "YER148W"; -chrV Steinmetz_2013 transcript 468335 468981 . + . gene_id "ST04832"; transcript_id "YER150W"; -chrV Steinmetz_2013 transcript 475000 476293 . + . gene_id "ST04833"; transcript_id "YER154W"; -chrV Steinmetz_2013 transcript 483305 484743 . + . gene_id "ST04834"; transcript_id "CUT118"; -chrV Steinmetz_2013 transcript 484765 487232 . + . gene_id "ST04835"; transcript_id "YER157W"; -chrV Steinmetz_2013 transcript 490085 491393 . + . gene_id "ST04836"; transcript_id "SUT097"; -chrV Steinmetz_2013 transcript 500611 501328 . + . gene_id "ST04837"; transcript_id "CUT119"; -chrV Steinmetz_2013 transcript 503109 503930 . + . gene_id "ST04838"; transcript_id "XUT_5F-238"; -chrV Steinmetz_2013 transcript 504005 504982 . + . gene_id "ST04839"; transcript_id "SUT098"; -chrV Steinmetz_2013 transcript 510231 512232 . + . gene_id "ST04840"; transcript_id "YER165W"; -chrV Steinmetz_2013 transcript 517926 520781 . + . gene_id "ST04841"; transcript_id "YER167W"; -chrV Steinmetz_2013 transcript 523145 525965 . + . gene_id "ST04842"; transcript_id "YER169W"; -chrV Steinmetz_2013 transcript 525919 527007 . + . gene_id "ST04843"; transcript_id "YER170W"; -chrV Steinmetz_2013 transcript 526969 529518 . + . gene_id "ST04844"; transcript_id "YER171W"; -chrV Steinmetz_2013 transcript 539494 541575 . + . gene_id "ST04845"; transcript_id "YER175W-A"; -chrV Steinmetz_2013 transcript 541648 545169 . + . gene_id "ST04846"; transcript_id "YER176W"; -chrV Steinmetz_2013 transcript 545568 546444 . + . gene_id "ST04847"; transcript_id "YER177W"; -chrV Steinmetz_2013 transcript 546789 548213 . + . gene_id "ST04848"; transcript_id "YER178W"; -chrV Steinmetz_2013 transcript 552490 553357 . + . gene_id "ST04849"; transcript_id "YER182W"; -chrV Steinmetz_2013 transcript 554137 556060 . + . gene_id "ST04850"; transcript_id "SUT099"; -chrV Steinmetz_2013 transcript 554137 556946 . + . gene_id "ST04851"; transcript_id "XUT_5F-255"; -chrV Steinmetz_2013 transcript 565559 566809 . + . gene_id "ST04852"; transcript_id "YER187W"; -chrV Steinmetz_2013 transcript 567896 568981 . + . gene_id "ST04853"; transcript_id "YER188W"; -chrVI Steinmetz_2013 transcript 14192 14787 . - . gene_id "ST04854"; transcript_id "YFL057C"; -chrVI Steinmetz_2013 transcript 20782 22852 . - . gene_id "ST04855"; transcript_id "YFL054C"; -chrVI Steinmetz_2013 transcript 25696 27896 . - . gene_id "ST04856"; transcript_id "XUT_6R-17"; -chrVI Steinmetz_2013 transcript 32987 36627 . - . gene_id "ST04857"; transcript_id "YFL050C"; -chrVI Steinmetz_2013 transcript 38727 40202 . - . gene_id "ST04858"; transcript_id "YFL048C"; -chrVI Steinmetz_2013 transcript 43470 44467 . - . gene_id "ST04859"; transcript_id "YFL045C"; -chrVI Steinmetz_2013 transcript 44436 45579 . - . gene_id "ST04860"; transcript_id "YFL044C"; -chrVI Steinmetz_2013 transcript 45630 47764 . - . gene_id "ST04861"; transcript_id "YFL042C"; -chrVI Steinmetz_2013 transcript 53158 54816 . - . gene_id "ST04862"; transcript_id "YFL039C"; -chrVI Steinmetz_2013 transcript 55248 56010 . - . gene_id "ST04863"; transcript_id "YFL038C"; -chrVI Steinmetz_2013 transcript 62843 64057 . - . gene_id "ST04864"; transcript_id "YFL034C-B"; -chrVI Steinmetz_2013 transcript 64173 64974 . - . gene_id "ST04865"; transcript_id "YFL034C-A"; -chrVI Steinmetz_2013 transcript 76396 77820 . - . gene_id "ST04866"; transcript_id "SUT524"; -chrVI Steinmetz_2013 transcript 77992 79215 . - . gene_id "ST04867"; transcript_id "YFL029C"; -chrVI Steinmetz_2013 transcript 79270 80235 . - . gene_id "ST04868"; transcript_id "YFL028C"; -chrVI Steinmetz_2013 transcript 80331 81927 . - . gene_id "ST04869"; transcript_id "YFL027C"; -chrVI Steinmetz_2013 transcript 83989 87297 . - . gene_id "ST04870"; transcript_id "YFL025C"; -chrVI Steinmetz_2013 transcript 87463 90638 . - . gene_id "ST04871"; transcript_id "YFL024C"; -chrVI Steinmetz_2013 transcript 93384 95052 . - . gene_id "ST04872"; transcript_id "YFL022C"; -chrVI Steinmetz_2013 transcript 95731 97252 . - . gene_id "ST04873"; transcript_id "YFL021C-A"; -chrVI Steinmetz_2013 transcript 97524 97998 . - . gene_id "ST04874"; transcript_id "SUT525"; -chrVI Steinmetz_2013 transcript 99116 99714 . - . gene_id "ST04875"; transcript_id "YFL020C"; -chrVI Steinmetz_2013 transcript 101568 103206 . - . gene_id "ST04876"; transcript_id "YFL018C"; -chrVI Steinmetz_2013 transcript 103907 104473 . - . gene_id "ST04877"; transcript_id "YFL017C"; -chrVI Steinmetz_2013 transcript 104598 106317 . - . gene_id "ST04878"; transcript_id "YFL016C"; -chrVI Steinmetz_2013 transcript 107790 109963 . - . gene_id "ST04879"; transcript_id "YFL013C"; -chrVI Steinmetz_2013 transcript 114946 115772 . - . gene_id "ST04880"; transcript_id "YFL010C"; -chrVI Steinmetz_2013 transcript 118712 119173 . - . gene_id "ST04881"; transcript_id "CUT575"; -chrVI Steinmetz_2013 transcript 128150 129931 . - . gene_id "ST04882"; transcript_id "XUT_6R-53"; -chrVI Steinmetz_2013 transcript 131068 131591 . - . gene_id "ST04883"; transcript_id "SUT527"; -chrVI Steinmetz_2013 transcript 144976 146950 . - . gene_id "ST04884"; transcript_id "YFL002C"; -chrVI Steinmetz_2013 transcript 152476 153188 . - . gene_id "ST04885"; transcript_id "YFR003C"; -chrVI Steinmetz_2013 transcript 154323 155917 . - . gene_id "ST04886"; transcript_id "YFR005C"; -chrVI Steinmetz_2013 transcript 158185 159100 . - . gene_id "ST04887"; transcript_id "SUT528"; -chrVI Steinmetz_2013 transcript 159095 160093 . - . gene_id "ST04888"; transcript_id "XUT_6R-66"; -chrVI Steinmetz_2013 transcript 166585 167290 . - . gene_id "ST04889"; transcript_id "YFR011C"; -chrVI Steinmetz_2013 transcript 172315 173927 . - . gene_id "ST04890"; transcript_id "YFR014C"; -chrVI Steinmetz_2013 transcript 174126 176480 . - . gene_id "ST04891"; transcript_id "YFR015C"; -chrVI Steinmetz_2013 transcript 176998 180783 . - . gene_id "ST04892"; transcript_id "YFR016C"; -chrVI Steinmetz_2013 transcript 182158 182985 . - . gene_id "ST04893"; transcript_id "YFR017C"; -chrVI Steinmetz_2013 transcript 182969 184260 . - . gene_id "ST04894"; transcript_id "YFR018C"; -chrVI Steinmetz_2013 transcript 194423 196366 . - . gene_id "ST04895"; transcript_id "CUT578"; -chrVI Steinmetz_2013 transcript 194533 194958 . - . gene_id "ST04896"; transcript_id "XUT_6R-82"; -chrVI Steinmetz_2013 transcript 201780 203458 . - . gene_id "ST04897"; transcript_id "YFR024C-A"; -chrVI Steinmetz_2013 transcript 203656 204774 . - . gene_id "ST04898"; transcript_id "YFR025C"; -chrVI Steinmetz_2013 transcript 205669 207241 . - . gene_id "ST04899"; transcript_id "YFR026C"; -chrVI Steinmetz_2013 transcript 208337 210126 . - . gene_id "ST04900"; transcript_id "YFR028C"; -chrVI Steinmetz_2013 transcript 212964 213406 . - . gene_id "ST04901"; transcript_id "SUT530"; -chrVI Steinmetz_2013 transcript 216546 220184 . - . gene_id "ST04902"; transcript_id "YFR031C"; -chrVI Steinmetz_2013 transcript 220348 221442 . - . gene_id "ST04903"; transcript_id "YFR031C-A"; -chrVI Steinmetz_2013 transcript 224185 224875 . - . gene_id "ST04904"; transcript_id "YFR033C"; -chrVI Steinmetz_2013 transcript 224805 225993 . - . gene_id "ST04905"; transcript_id "YFR034C"; -chrVI Steinmetz_2013 transcript 227500 229216 . - . gene_id "ST04906"; transcript_id "YFR037C"; -chrVI Steinmetz_2013 transcript 231945 233673 . - . gene_id "ST04907"; transcript_id "YFR039C"; -chrVI Steinmetz_2013 transcript 237257 238290 . - . gene_id "ST04908"; transcript_id "YFR041C"; -chrVI Steinmetz_2013 transcript 239059 239858 . - . gene_id "ST04909"; transcript_id "YFR043C"; -chrVI Steinmetz_2013 transcript 239923 241455 . - . gene_id "ST04910"; transcript_id "YFR044C"; -chrVI Steinmetz_2013 transcript 241535 241848 . - . gene_id "ST04911"; transcript_id "XUT_6R-108"; -chrVI Steinmetz_2013 transcript 243007 244171 . - . gene_id "ST04912"; transcript_id "YFR046C"; -chrVI Steinmetz_2013 transcript 244205 245200 . - . gene_id "ST04913"; transcript_id "YFR047C"; -chrVI Steinmetz_2013 transcript 248928 249919 . - . gene_id "ST04914"; transcript_id "YFR050C"; -chrVI Steinmetz_2013 transcript 250090 251828 . - . gene_id "ST04915"; transcript_id "YFR051C"; -chrVI Steinmetz_2013 transcript 16682 19085 . + . gene_id "ST04916"; transcript_id "YFL055W"; -chrVI Steinmetz_2013 transcript 28207 30237 . + . gene_id "ST04917"; transcript_id "YFL052W"; -chrVI Steinmetz_2013 transcript 36772 38826 . + . gene_id "ST04918"; transcript_id "YFL049W"; -chrVI Steinmetz_2013 transcript 40413 42629 . + . gene_id "ST04919"; transcript_id "YFL047W"; -chrVI Steinmetz_2013 transcript 42797 43592 . + . gene_id "ST04920"; transcript_id "YFL046W"; -chrVI Steinmetz_2013 transcript 47890 48986 . + . gene_id "ST04921"; transcript_id "YFL041W-A"; -chrVI Steinmetz_2013 transcript 49117 51181 . + . gene_id "ST04922"; transcript_id "YFL041W"; -chrVI Steinmetz_2013 transcript 54597 55346 . + . gene_id "ST04923"; transcript_id "SUT101"; -chrVI Steinmetz_2013 transcript 54819 55346 . + . gene_id "ST04924"; transcript_id "XUT_6F-22"; -chrVI Steinmetz_2013 transcript 56271 57934 . + . gene_id "ST04925"; transcript_id "YFL037W"; -chrVI Steinmetz_2013 transcript 58563 62937 . + . gene_id "ST04926"; transcript_id "YFL036W"; -chrVI Steinmetz_2013 transcript 65307 68810 . + . gene_id "ST04927"; transcript_id "YFL034W"; -chrVI Steinmetz_2013 transcript 76811 78087 . + . gene_id "ST04928"; transcript_id "YFL030W"; -chrVI Steinmetz_2013 transcript 78743 79373 . + . gene_id "ST04929"; transcript_id "XUT_6F-34"; -chrVI Steinmetz_2013 transcript 82078 84065 . + . gene_id "ST04930"; transcript_id "YFL026W"; -chrVI Steinmetz_2013 transcript 89592 90716 . + . gene_id "ST04931"; transcript_id "SUT103"; -chrVI Steinmetz_2013 transcript 90979 93465 . + . gene_id "ST04932"; transcript_id "YFL023W"; -chrVI Steinmetz_2013 transcript 95928 97505 . + . gene_id "ST04933"; transcript_id "YFL021W"; -chrVI Steinmetz_2013 transcript 103684 103998 . + . gene_id "ST04934"; transcript_id "YFL017W-A"; -chrVI Steinmetz_2013 transcript 104115 104558 . + . gene_id "ST04935"; transcript_id "XUT_6F-46"; -chrVI Steinmetz_2013 transcript 107197 107770 . + . gene_id "ST04936"; transcript_id "YFL014W"; -chrVI Steinmetz_2013 transcript 110166 110570 . + . gene_id "ST04937"; transcript_id "SUT105"; -chrVI Steinmetz_2013 transcript 110586 111237 . + . gene_id "ST04938"; transcript_id "YFL012W"; -chrVI Steinmetz_2013 transcript 115953 118579 . + . gene_id "ST04939"; transcript_id "YFL009W"; -chrVI Steinmetz_2013 transcript 119388 123209 . + . gene_id "ST04940"; transcript_id "YFL008W"; -chrVI Steinmetz_2013 transcript 130197 131198 . + . gene_id "ST04941"; transcript_id "YFL005W"; -chrVI Steinmetz_2013 transcript 131720 134370 . + . gene_id "ST04942"; transcript_id "YFL004W"; -chrVI Steinmetz_2013 transcript 134860 135425 . + . gene_id "ST04943"; transcript_id "XUT_6F-62"; -chrVI Steinmetz_2013 transcript 147093 148491 . + . gene_id "ST04944"; transcript_id "YFL001W"; -chrVI Steinmetz_2013 transcript 149078 149795 . + . gene_id "ST04945"; transcript_id "YFR001W"; -chrVI Steinmetz_2013 transcript 150001 152628 . + . gene_id "ST04946"; transcript_id "YFR002W"; -chrVI Steinmetz_2013 transcript 153344 154412 . + . gene_id "ST04947"; transcript_id "YFR004W"; -chrVI Steinmetz_2013 transcript 156120 157841 . + . gene_id "ST04948"; transcript_id "YFR006W"; -chrVI Steinmetz_2013 transcript 159279 160426 . + . gene_id "ST04949"; transcript_id "YFR007W"; -chrVI Steinmetz_2013 transcript 160492 161547 . + . gene_id "ST04950"; transcript_id "YFR008W"; -chrVI Steinmetz_2013 transcript 164985 166663 . + . gene_id "ST04951"; transcript_id "YFR010W"; -chrVI Steinmetz_2013 transcript 169866 172439 . + . gene_id "ST04952"; transcript_id "YFR013W"; -chrVI Steinmetz_2013 transcript 192614 193542 . + . gene_id "ST04953"; transcript_id "YFR020W"; -chrVI Steinmetz_2013 transcript 194718 196421 . + . gene_id "ST04954"; transcript_id "YFR021W"; -chrVI Steinmetz_2013 transcript 196543 199196 . + . gene_id "ST04955"; transcript_id "YFR022W"; -chrVI Steinmetz_2013 transcript 207435 208430 . + . gene_id "ST04956"; transcript_id "YFR027W"; -chrVI Steinmetz_2013 transcript 210873 213045 . + . gene_id "ST04957"; transcript_id "YFR029W"; -chrVI Steinmetz_2013 transcript 213193 216470 . + . gene_id "ST04958"; transcript_id "YFR030W"; -chrVI Steinmetz_2013 transcript 225576 226599 . + . gene_id "ST04959"; transcript_id "YFR034W-A"; -chrVI Steinmetz_2013 transcript 229362 232029 . + . gene_id "ST04960"; transcript_id "YFR038W"; -chrVI Steinmetz_2013 transcript 238410 239152 . + . gene_id "ST04961"; transcript_id "YFR042W"; -chrVI Steinmetz_2013 transcript 241982 243136 . + . gene_id "ST04962"; transcript_id "YFR045W"; -chrVI Steinmetz_2013 transcript 246094 248177 . + . gene_id "ST04963"; transcript_id "YFR048W"; -chrVI Steinmetz_2013 transcript 248361 249012 . + . gene_id "ST04964"; transcript_id "YFR049W"; -chrVI Steinmetz_2013 transcript 252046 252401 . + . gene_id "ST04965"; transcript_id "XUT_6F-104"; -chrVI Steinmetz_2013 transcript 252478 253364 . + . gene_id "ST04966"; transcript_id "YFR052W"; -chrVI Steinmetz_2013 transcript 256499 257008 . + . gene_id "ST04967"; transcript_id "XUT_6F-106"; -chrVI Steinmetz_2013 transcript 264179 265704 . + . gene_id "ST04968"; transcript_id "YFR055W"; -chrVII Steinmetz_2013 transcript 12359 14266 . - . gene_id "ST04969"; transcript_id "YGL257C"; -chrVII Steinmetz_2013 transcript 17288 17747 . - . gene_id "ST04970"; transcript_id "SUT532"; -chrVII Steinmetz_2013 transcript 17320 17788 . - . gene_id "ST04971"; transcript_id "XUT_7R-5"; -chrVII Steinmetz_2013 transcript 25627 27497 . - . gene_id "ST04972"; transcript_id "YGL252C"; -chrVII Steinmetz_2013 transcript 31780 33647 . - . gene_id "ST04973"; transcript_id "XUT_7R-19"; -chrVII Steinmetz_2013 transcript 31825 32846 . - . gene_id "ST04974"; transcript_id "SUT533"; -chrVII Steinmetz_2013 transcript 32951 34758 . - . gene_id "ST04975"; transcript_id "SUT534"; -chrVII Steinmetz_2013 transcript 33886 34966 . - . gene_id "ST04976"; transcript_id "XUT_7R-20"; -chrVII Steinmetz_2013 transcript 37469 38809 . - . gene_id "ST04977"; transcript_id "YGL246C"; -chrVII Steinmetz_2013 transcript 44503 45252 . - . gene_id "ST04978"; transcript_id "YGL242C"; -chrVII Steinmetz_2013 transcript 52594 53612 . - . gene_id "ST04979"; transcript_id "YGL237C"; -chrVII Steinmetz_2013 transcript 53717 55805 . - . gene_id "ST04980"; transcript_id "YGL236C"; -chrVII Steinmetz_2013 transcript 55806 56162 . - . gene_id "ST04981"; transcript_id "CUT585"; -chrVII Steinmetz_2013 transcript 62975 63631 . - . gene_id "ST04982"; transcript_id "YGL231C"; -chrVII Steinmetz_2013 transcript 63698 64232 . - . gene_id "ST04983"; transcript_id "YGL230C"; -chrVII Steinmetz_2013 transcript 64319 67188 . - . gene_id "ST04984"; transcript_id "YGL229C"; -chrVII Steinmetz_2013 transcript 72602 73192 . - . gene_id "ST04985"; transcript_id "YGL226C-A"; -chrVII Steinmetz_2013 transcript 77943 78959 . - . gene_id "ST04986"; transcript_id "YGL224C"; -chrVII Steinmetz_2013 transcript 79068 80370 . - . gene_id "ST04987"; transcript_id "YGL223C"; -chrVII Steinmetz_2013 transcript 80509 81264 . - . gene_id "ST04988"; transcript_id "YGL222C"; -chrVII Steinmetz_2013 transcript 81328 82303 . - . gene_id "ST04989"; transcript_id "YGL221C"; -chrVII Steinmetz_2013 transcript 82794 84284 . - . gene_id "ST04990"; transcript_id "YGL219C"; -chrVII Steinmetz_2013 transcript 89933 91264 . - . gene_id "ST04991"; transcript_id "YGL213C"; -chrVII Steinmetz_2013 transcript 94453 94664 . - . gene_id "ST04992"; transcript_id "SUT535"; -chrVII Steinmetz_2013 transcript 95216 97084 . - . gene_id "ST04993"; transcript_id "SUT536"; -chrVII Steinmetz_2013 transcript 95513 96889 . - . gene_id "ST04994"; transcript_id "XUT_7R-43"; -chrVII Steinmetz_2013 transcript 108317 110332 . - . gene_id "ST04995"; transcript_id "SUT537"; -chrVII Steinmetz_2013 transcript 111188 112120 . - . gene_id "ST04996"; transcript_id "YGL204C"; -chrVII Steinmetz_2013 transcript 112406 114741 . - . gene_id "ST04997"; transcript_id "YGL203C"; -chrVII Steinmetz_2013 transcript 117669 120974 . - . gene_id "ST04998"; transcript_id "YGL201C"; -chrVII Steinmetz_2013 transcript 122581 123366 . - . gene_id "ST04999"; transcript_id "YGL200C"; -chrVII Steinmetz_2013 transcript 123538 124260 . - . gene_id "ST05000"; transcript_id "YGL199C"; -chrVII Steinmetz_2013 transcript 139577 140216 . - . gene_id "ST05001"; transcript_id "YGL194C-A"; -chrVII Steinmetz_2013 transcript 140245 141787 . - . gene_id "ST05002"; transcript_id "YGL194C"; -chrVII Steinmetz_2013 transcript 141860 142517 . - . gene_id "ST05003"; transcript_id "YGL193C"; -chrVII Steinmetz_2013 transcript 145348 147934 . - . gene_id "ST05004"; transcript_id "YGL190C"; -chrVII Steinmetz_2013 transcript 149630 150634 . - . gene_id "ST05005"; transcript_id "YGL187C"; -chrVII Steinmetz_2013 transcript 150995 152808 . - . gene_id "ST05006"; transcript_id "YGL186C"; -chrVII Steinmetz_2013 transcript 153087 154315 . - . gene_id "ST05007"; transcript_id "YGL185C"; -chrVII Steinmetz_2013 transcript 159084 159748 . - . gene_id "ST05008"; transcript_id "XUT_7R-77"; -chrVII Steinmetz_2013 transcript 163350 165179 . - . gene_id "ST05009"; transcript_id "YGL179C"; -chrVII Steinmetz_2013 transcript 165637 166122 . - . gene_id "ST05010"; transcript_id "SUT539"; -chrVII Steinmetz_2013 transcript 166852 167511 . - . gene_id "ST05011"; transcript_id "CUT590"; -chrVII Steinmetz_2013 transcript 171312 173124 . - . gene_id "ST05012"; transcript_id "YGL176C"; -chrVII Steinmetz_2013 transcript 187440 190844 . - . gene_id "ST05013"; transcript_id "YGL167C"; -chrVII Steinmetz_2013 transcript 193572 196526 . - . gene_id "ST05014"; transcript_id "YGL163C"; -chrVII Steinmetz_2013 transcript 196652 197907 . - . gene_id "ST05015"; transcript_id "SUT540"; -chrVII Steinmetz_2013 transcript 196924 197907 . - . gene_id "ST05016"; transcript_id "XUT_7R-88"; -chrVII Steinmetz_2013 transcript 199059 200227 . - . gene_id "ST05017"; transcript_id "YGL161C"; -chrVII Steinmetz_2013 transcript 215210 216116 . - . gene_id "ST05018"; transcript_id "YGL154C"; -chrVII Steinmetz_2013 transcript 227651 228346 . - . gene_id "ST05019"; transcript_id "YGL147C"; -chrVII Steinmetz_2013 transcript 228342 229724 . - . gene_id "ST05020"; transcript_id "YGL146C"; -chrVII Steinmetz_2013 transcript 232377 234546 . - . gene_id "ST05021"; transcript_id "YGL144C"; -chrVII Steinmetz_2013 transcript 234586 235989 . - . gene_id "ST05022"; transcript_id "YGL143C"; -chrVII Steinmetz_2013 transcript 236121 238174 . - . gene_id "ST05023"; transcript_id "YGL142C"; -chrVII Steinmetz_2013 transcript 252771 253885 . - . gene_id "ST05024"; transcript_id "YGL136C"; -chrVII Steinmetz_2013 transcript 255557 257288 . - . gene_id "ST05025"; transcript_id "XUT_7R-105"; -chrVII Steinmetz_2013 transcript 256334 257274 . - . gene_id "ST05026"; transcript_id "CUT592"; -chrVII Steinmetz_2013 transcript 267574 269146 . - . gene_id "ST05027"; transcript_id "YGL129C"; -chrVII Steinmetz_2013 transcript 269128 270150 . - . gene_id "ST05028"; transcript_id "YGL128C"; -chrVII Steinmetz_2013 transcript 270245 270826 . - . gene_id "ST05029"; transcript_id "YGL127C"; -chrVII Steinmetz_2013 transcript 274656 276728 . - . gene_id "ST05030"; transcript_id "YGL124C"; -chrVII Steinmetz_2013 transcript 278806 280532 . - . gene_id "ST05031"; transcript_id "YGL122C"; -chrVII Steinmetz_2013 transcript 280631 281168 . - . gene_id "ST05032"; transcript_id "YGL121C"; -chrVII Steinmetz_2013 transcript 281621 283976 . - . gene_id "ST05033"; transcript_id "YGL120C"; -chrVII Steinmetz_2013 transcript 292818 293243 . - . gene_id "ST05034"; transcript_id "XUT_7R-124"; -chrVII Steinmetz_2013 transcript 298048 299764 . - . gene_id "ST05035"; transcript_id "YGL112C"; -chrVII Steinmetz_2013 transcript 301441 303418 . - . gene_id "ST05036"; transcript_id "YGL110C"; -chrVII Steinmetz_2013 transcript 303463 304106 . - . gene_id "ST05037"; transcript_id "YGL108C"; -chrVII Steinmetz_2013 transcript 304241 306292 . - . gene_id "ST05038"; transcript_id "YGL107C"; -chrVII Steinmetz_2013 transcript 308576 310173 . - . gene_id "ST05039"; transcript_id "YGL104C"; -chrVII Steinmetz_2013 transcript 312028 313037 . - . gene_id "ST05040"; transcript_id "XUT_7R-129"; -chrVII Steinmetz_2013 transcript 314209 314377 . - . gene_id "ST05041"; transcript_id "CUT595"; -chrVII Steinmetz_2013 transcript 323212 324085 . - . gene_id "ST05042"; transcript_id "SUT543"; -chrVII Steinmetz_2013 transcript 328782 330657 . - . gene_id "ST05043"; transcript_id "YGL095C"; -chrVII Steinmetz_2013 transcript 330971 334644 . - . gene_id "ST05044"; transcript_id "YGL094C"; -chrVII Steinmetz_2013 transcript 341905 343063 . - . gene_id "ST05045"; transcript_id "YGL091C"; -chrVII Steinmetz_2013 transcript 346291 346940 . - . gene_id "ST05046"; transcript_id "YGL087C"; -chrVII Steinmetz_2013 transcript 350511 352351 . - . gene_id "ST05047"; transcript_id "YGL084C"; -chrVII Steinmetz_2013 transcript 354534 355538 . - . gene_id "ST05048"; transcript_id "SUT544"; -chrVII Steinmetz_2013 transcript 357383 358567 . - . gene_id "ST05049"; transcript_id "CUT598"; -chrVII Steinmetz_2013 transcript 359177 359914 . - . gene_id "ST05050"; transcript_id "SUT545"; -chrVII Steinmetz_2013 transcript 360099 361929 . - . gene_id "ST05051"; transcript_id "YGL078C"; -chrVII Steinmetz_2013 transcript 362141 364053 . - . gene_id "ST05052"; transcript_id "YGL077C"; -chrVII Steinmetz_2013 transcript 364226 366018 . - . gene_id "ST05053"; transcript_id "YGL076C"; -chrVII Steinmetz_2013 transcript 366558 368513 . - . gene_id "ST05054"; transcript_id "YGL075C"; -chrVII Steinmetz_2013 transcript 374128 374852 . - . gene_id "ST05055"; transcript_id "YGL070C"; -chrVII Steinmetz_2013 transcript 379706 381314 . - . gene_id "ST05056"; transcript_id "YGL065C"; -chrVII Steinmetz_2013 transcript 381450 383215 . - . gene_id "ST05057"; transcript_id "YGL064C"; -chrVII Steinmetz_2013 transcript 383408 384651 . - . gene_id "ST05058"; transcript_id "YGL063C-A"; -chrVII Steinmetz_2013 transcript 383424 384299 . - . gene_id "ST05059"; transcript_id "XUT_7R-159"; -chrVII Steinmetz_2013 transcript 388865 389784 . - . gene_id "ST05060"; transcript_id "YGL061C"; -chrVII Steinmetz_2013 transcript 394813 395845 . - . gene_id "ST05061"; transcript_id "YGL057C"; -chrVII Steinmetz_2013 transcript 395956 397716 . - . gene_id "ST05062"; transcript_id "YGL056C"; -chrVII Steinmetz_2013 transcript 400572 401352 . - . gene_id "ST05063"; transcript_id "YGL054C"; -chrVII Steinmetz_2013 transcript 406693 409778 . - . gene_id "ST05064"; transcript_id "YGL049C"; -chrVII Steinmetz_2013 transcript 409973 411314 . - . gene_id "ST05065"; transcript_id "YGL048C"; -chrVII Steinmetz_2013 transcript 415868 417263 . - . gene_id "ST05066"; transcript_id "YGL044C"; -chrVII Steinmetz_2013 transcript 419320 420631 . - . gene_id "ST05067"; transcript_id "YGL040C"; -chrVII Steinmetz_2013 transcript 425019 426849 . - . gene_id "ST05068"; transcript_id "YGL038C"; -chrVII Steinmetz_2013 transcript 427156 428035 . - . gene_id "ST05069"; transcript_id "YGL037C"; -chrVII Steinmetz_2013 transcript 436470 436969 . - . gene_id "ST05070"; transcript_id "YGL032C"; -chrVII Steinmetz_2013 transcript 437340 438438 . - . gene_id "ST05071"; transcript_id "YGL031C"; -chrVII Steinmetz_2013 transcript 440982 443076 . - . gene_id "ST05072"; transcript_id "YGL028C"; -chrVII Steinmetz_2013 transcript 443550 446156 . - . gene_id "ST05073"; transcript_id "YGL027C"; -chrVII Steinmetz_2013 transcript 446330 448553 . - . gene_id "ST05074"; transcript_id "YGL026C"; -chrVII Steinmetz_2013 transcript 450069 452136 . - . gene_id "ST05075"; transcript_id "YGL023C"; -chrVII Steinmetz_2013 transcript 457084 457934 . - . gene_id "ST05076"; transcript_id "YGL020C"; -chrVII Steinmetz_2013 transcript 458974 459699 . - . gene_id "ST05077"; transcript_id "YGL018C"; -chrVII Steinmetz_2013 transcript 464935 465641 . - . gene_id "ST05078"; transcript_id "YGL015C"; -chrVII Steinmetz_2013 transcript 468993 472325 . - . gene_id "ST05079"; transcript_id "YGL013C"; -chrVII Steinmetz_2013 transcript 474362 475272 . - . gene_id "ST05080"; transcript_id "YGL011C"; -chrVII Steinmetz_2013 transcript 476152 478723 . - . gene_id "ST05081"; transcript_id "YGL009C"; -chrVII Steinmetz_2013 transcript 479415 482902 . - . gene_id "ST05082"; transcript_id "YGL008C"; -chrVII Steinmetz_2013 transcript 482850 483966 . - . gene_id "ST05083"; transcript_id "YGL007C-A"; -chrVII Steinmetz_2013 transcript 489485 490576 . - . gene_id "ST05084"; transcript_id "YGL005C"; -chrVII Steinmetz_2013 transcript 490658 491960 . - . gene_id "ST05085"; transcript_id "YGL004C"; -chrVII Steinmetz_2013 transcript 492327 494277 . - . gene_id "ST05086"; transcript_id "YGL003C"; -chrVII Steinmetz_2013 transcript 495330 496599 . - . gene_id "ST05087"; transcript_id "YGL001C"; -chrVII Steinmetz_2013 transcript 497056 498043 . - . gene_id "ST05088"; transcript_id "YGR001C"; -chrVII Steinmetz_2013 transcript 498201 499915 . - . gene_id "ST05089"; transcript_id "YGR002C"; -chrVII Steinmetz_2013 transcript 504550 505889 . - . gene_id "ST05090"; transcript_id "YGR005C"; -chrVII Steinmetz_2013 transcript 507950 508451 . - . gene_id "ST05091"; transcript_id "YGR008C"; -chrVII Steinmetz_2013 transcript 508994 511073 . - . gene_id "ST05092"; transcript_id "YGR009C"; -chrVII Steinmetz_2013 transcript 520888 522095 . - . gene_id "ST05093"; transcript_id "YGR015C"; -chrVII Steinmetz_2013 transcript 522853 523378 . - . gene_id "ST05094"; transcript_id "SUT549"; -chrVII Steinmetz_2013 transcript 524243 524720 . - . gene_id "ST05095"; transcript_id "YGR018C"; -chrVII Steinmetz_2013 transcript 526840 527393 . - . gene_id "ST05096"; transcript_id "YGR020C"; -chrVII Steinmetz_2013 transcript 534063 534805 . - . gene_id "ST05097"; transcript_id "YGR027C"; -chrVII Steinmetz_2013 transcript 543406 544345 . - . gene_id "ST05098"; transcript_id "SUT550"; -chrVII Steinmetz_2013 transcript 545587 546172 . - . gene_id "ST05099"; transcript_id "YGR030C"; -chrVII Steinmetz_2013 transcript 553977 555044 . - . gene_id "ST05100"; transcript_id "YGR033C"; -chrVII Steinmetz_2013 transcript 556905 557512 . - . gene_id "ST05101"; transcript_id "YGR035C"; -chrVII Steinmetz_2013 transcript 557460 559033 . - . gene_id "ST05102"; transcript_id "YGR036C"; -chrVII Steinmetz_2013 transcript 559550 560038 . - . gene_id "ST05103"; transcript_id "YGR037C"; -chrVII Steinmetz_2013 transcript 560257 561391 . - . gene_id "ST05104"; transcript_id "XUT_7R-255"; -chrVII Steinmetz_2013 transcript 574874 575166 . - . gene_id "ST05105"; transcript_id "XUT_7R-261"; -chrVII Steinmetz_2013 transcript 576114 576488 . - . gene_id "ST05106"; transcript_id "CUT607"; -chrVII Steinmetz_2013 transcript 577041 579293 . - . gene_id "ST05107"; transcript_id "SUT551"; -chrVII Steinmetz_2013 transcript 580236 581469 . - . gene_id "ST05108"; transcript_id "YGR043C"; -chrVII Steinmetz_2013 transcript 586284 589504 . - . gene_id "ST05109"; transcript_id "YGR047C"; -chrVII Steinmetz_2013 transcript 591104 591879 . - . gene_id "ST05110"; transcript_id "XUT_7R-269"; -chrVII Steinmetz_2013 transcript 592014 592519 . - . gene_id "ST05111"; transcript_id "YGR050C"; -chrVII Steinmetz_2013 transcript 594922 595940 . - . gene_id "ST05112"; transcript_id "YGR053C"; -chrVII Steinmetz_2013 transcript 604420 605564 . - . gene_id "ST05113"; transcript_id "YGR057C"; -chrVII Steinmetz_2013 transcript 609135 609634 . - . gene_id "ST05114"; transcript_id "XUT_7R-275"; -chrVII Steinmetz_2013 transcript 611812 616010 . - . gene_id "ST05115"; transcript_id "YGR061C"; -chrVII Steinmetz_2013 transcript 616251 617313 . - . gene_id "ST05116"; transcript_id "YGR062C"; -chrVII Steinmetz_2013 transcript 617384 617852 . - . gene_id "ST05117"; transcript_id "YGR063C"; -chrVII Steinmetz_2013 transcript 617982 619968 . - . gene_id "ST05118"; transcript_id "YGR065C"; -chrVII Steinmetz_2013 transcript 622250 624883 . - . gene_id "ST05119"; transcript_id "YGR067C"; -chrVII Steinmetz_2013 transcript 624929 627120 . - . gene_id "ST05120"; transcript_id "YGR068C"; -chrVII Steinmetz_2013 transcript 631277 634082 . - . gene_id "ST05121"; transcript_id "YGR071C"; -chrVII Steinmetz_2013 transcript 635551 636024 . - . gene_id "ST05122"; transcript_id "YGR073C"; -chrVII Steinmetz_2013 transcript 636987 637633 . - . gene_id "ST05123"; transcript_id "YGR076C"; -chrVII Steinmetz_2013 transcript 637692 639521 . - . gene_id "ST05124"; transcript_id "YGR077C"; -chrVII Steinmetz_2013 transcript 639697 640402 . - . gene_id "ST05125"; transcript_id "YGR078C"; -chrVII Steinmetz_2013 transcript 643036 643784 . - . gene_id "ST05126"; transcript_id "YGR081C"; -chrVII Steinmetz_2013 transcript 648296 648930 . - . gene_id "ST05127"; transcript_id "YGR085C"; -chrVII Steinmetz_2013 transcript 649569 650698 . - . gene_id "ST05128"; transcript_id "YGR086C"; -chrVII Steinmetz_2013 transcript 651193 653013 . - . gene_id "ST05129"; transcript_id "YGR087C"; -chrVII Steinmetz_2013 transcript 675626 676412 . - . gene_id "ST05130"; transcript_id "YGR095C"; -chrVII Steinmetz_2013 transcript 676509 677339 . - . gene_id "ST05131"; transcript_id "SUT554"; -chrVII Steinmetz_2013 transcript 694425 695149 . - . gene_id "ST05132"; transcript_id "YGR102C"; -chrVII Steinmetz_2013 transcript 697368 698398 . - . gene_id "ST05133"; transcript_id "YGR104C"; -chrVII Steinmetz_2013 transcript 698885 699846 . - . gene_id "ST05134"; transcript_id "YGR106C"; -chrVII Steinmetz_2013 transcript 701364 702131 . - . gene_id "ST05135"; transcript_id "SUT556"; -chrVII Steinmetz_2013 transcript 705245 706566 . - . gene_id "ST05136"; transcript_id "YGR109C"; -chrVII Steinmetz_2013 transcript 713345 715013 . - . gene_id "ST05137"; transcript_id "SUT557"; -chrVII Steinmetz_2013 transcript 714986 715648 . - . gene_id "ST05138"; transcript_id "SUT558"; -chrVII Steinmetz_2013 transcript 718606 719256 . - . gene_id "ST05139"; transcript_id "XUT_7R-328"; -chrVII Steinmetz_2013 transcript 724775 726488 . - . gene_id "ST05140"; transcript_id "YGR117C"; -chrVII Steinmetz_2013 transcript 727965 729760 . - . gene_id "ST05141"; transcript_id "YGR119C"; -chrVII Steinmetz_2013 transcript 729857 730847 . - . gene_id "ST05142"; transcript_id "YGR120C"; -chrVII Steinmetz_2013 transcript 731293 732966 . - . gene_id "ST05143"; transcript_id "YGR121C"; -chrVII Steinmetz_2013 transcript 735175 736020 . - . gene_id "ST05144"; transcript_id "YGR122C-A"; -chrVII Steinmetz_2013 transcript 736501 738259 . - . gene_id "ST05145"; transcript_id "YGR123C"; -chrVII Steinmetz_2013 transcript 741709 742083 . - . gene_id "ST05146"; transcript_id "SUT559"; -chrVII Steinmetz_2013 transcript 747817 750129 . - . gene_id "ST05147"; transcript_id "YGR128C"; -chrVII Steinmetz_2013 transcript 751219 753947 . - . gene_id "ST05148"; transcript_id "YGR130C"; -chrVII Steinmetz_2013 transcript 755345 756494 . - . gene_id "ST05149"; transcript_id "YGR132C"; -chrVII Steinmetz_2013 transcript 756697 757445 . - . gene_id "ST05150"; transcript_id "SUT560"; -chrVII Steinmetz_2013 transcript 761671 762187 . - . gene_id "ST05151"; transcript_id "CUT620"; -chrVII Steinmetz_2013 transcript 763577 765886 . - . gene_id "ST05152"; transcript_id "YGR138C"; -chrVII Steinmetz_2013 transcript 776094 777977 . - . gene_id "ST05153"; transcript_id "SUT562"; -chrVII Steinmetz_2013 transcript 784049 785155 . - . gene_id "ST05154"; transcript_id "YGR146C"; -chrVII Steinmetz_2013 transcript 785106 785493 . - . gene_id "ST05155"; transcript_id "YGR146C-A"; -chrVII Steinmetz_2013 transcript 785936 786983 . - . gene_id "ST05156"; transcript_id "YGR147C"; -chrVII Steinmetz_2013 transcript 787173 788200 . - . gene_id "ST05157"; transcript_id "YGR148C"; -chrVII Steinmetz_2013 transcript 790337 793063 . - . gene_id "ST05158"; transcript_id "YGR150C"; -chrVII Steinmetz_2013 transcript 796555 798135 . - . gene_id "ST05159"; transcript_id "YGR154C"; -chrVII Steinmetz_2013 transcript 800453 801804 . - . gene_id "ST05160"; transcript_id "XUT_7R-365"; -chrVII Steinmetz_2013 transcript 800453 801624 . - . gene_id "ST05161"; transcript_id "SUT564"; -chrVII Steinmetz_2013 transcript 805044 806073 . - . gene_id "ST05162"; transcript_id "YGR158C"; -chrVII Steinmetz_2013 transcript 806268 807700 . - . gene_id "ST05163"; transcript_id "YGR159C"; -chrVII Steinmetz_2013 transcript 808564 809514 . - . gene_id "ST05164"; transcript_id "YGR161C"; -chrVII Steinmetz_2013 transcript 831804 832174 . - . gene_id "ST05165"; transcript_id "SUT565"; -chrVII Steinmetz_2013 transcript 833270 834523 . - . gene_id "ST05166"; transcript_id "YGR168C"; -chrVII Steinmetz_2013 transcript 834590 835929 . - . gene_id "ST05167"; transcript_id "YGR169C"; -chrVII Steinmetz_2013 transcript 836011 836769 . - . gene_id "ST05168"; transcript_id "YGR169C-A"; -chrVII Steinmetz_2013 transcript 840710 842574 . - . gene_id "ST05169"; transcript_id "YGR171C"; -chrVII Steinmetz_2013 transcript 842718 843621 . - . gene_id "ST05170"; transcript_id "YGR172C"; -chrVII Steinmetz_2013 transcript 846764 848450 . - . gene_id "ST05171"; transcript_id "YGR175C"; -chrVII Steinmetz_2013 transcript 848613 850499 . - . gene_id "ST05172"; transcript_id "YGR177C"; -chrVII Steinmetz_2013 transcript 850924 853428 . - . gene_id "ST05173"; transcript_id "YGR178C"; -chrVII Steinmetz_2013 transcript 853543 854912 . - . gene_id "ST05174"; transcript_id "YGR179C"; -chrVII Steinmetz_2013 transcript 855173 856510 . - . gene_id "ST05175"; transcript_id "YGR180C"; -chrVII Steinmetz_2013 transcript 858911 859504 . - . gene_id "ST05176"; transcript_id "YGR183C"; -chrVII Steinmetz_2013 transcript 866242 867552 . - . gene_id "ST05177"; transcript_id "YGR185C"; -chrVII Steinmetz_2013 transcript 870094 871472 . - . gene_id "ST05178"; transcript_id "YGR187C"; -chrVII Steinmetz_2013 transcript 871972 875162 . - . gene_id "ST05179"; transcript_id "YGR188C"; -chrVII Steinmetz_2013 transcript 876550 878254 . - . gene_id "ST05180"; transcript_id "YGR189C"; -chrVII Steinmetz_2013 transcript 879336 879911 . - . gene_id "ST05181"; transcript_id "SUT566"; -chrVII Steinmetz_2013 transcript 882706 883849 . - . gene_id "ST05182"; transcript_id "YGR192C"; -chrVII Steinmetz_2013 transcript 884405 885830 . - . gene_id "ST05183"; transcript_id "YGR193C"; -chrVII Steinmetz_2013 transcript 885950 888347 . - . gene_id "ST05184"; transcript_id "YGR194C"; -chrVII Steinmetz_2013 transcript 889621 892226 . - . gene_id "ST05185"; transcript_id "YGR196C"; -chrVII Steinmetz_2013 transcript 892431 894341 . - . gene_id "ST05186"; transcript_id "YGR197C"; -chrVII Steinmetz_2013 transcript 899829 902329 . - . gene_id "ST05187"; transcript_id "YGR200C"; -chrVII Steinmetz_2013 transcript 902452 903201 . - . gene_id "ST05188"; transcript_id "YGR201C"; -chrVII Steinmetz_2013 transcript 903341 904774 . - . gene_id "ST05189"; transcript_id "YGR202C"; -chrVII Steinmetz_2013 transcript 904927 905322 . - . gene_id "ST05190"; transcript_id "SUT567"; -chrVII Steinmetz_2013 transcript 904908 905570 . - . gene_id "ST05191"; transcript_id "XUT_7R-418"; -chrVII Steinmetz_2013 transcript 910733 911658 . - . gene_id "ST05192"; transcript_id "YGR207C"; -chrVII Steinmetz_2013 transcript 912830 913280 . - . gene_id "ST05193"; transcript_id "YGR209C"; -chrVII Steinmetz_2013 transcript 913387 914848 . - . gene_id "ST05194"; transcript_id "YGR210C"; -chrVII Steinmetz_2013 transcript 918369 919469 . - . gene_id "ST05195"; transcript_id "YGR213C"; -chrVII Steinmetz_2013 transcript 922510 924509 . - . gene_id "ST05196"; transcript_id "YGR216C"; -chrVII Steinmetz_2013 transcript 935998 936893 . - . gene_id "ST05197"; transcript_id "YGR220C"; -chrVII Steinmetz_2013 transcript 937061 939079 . - . gene_id "ST05198"; transcript_id "YGR221C"; -chrVII Steinmetz_2013 transcript 940787 942236 . - . gene_id "ST05199"; transcript_id "YGR223C"; -chrVII Steinmetz_2013 transcript 942357 944897 . - . gene_id "ST05200"; transcript_id "SUT569"; -chrVII Steinmetz_2013 transcript 949356 951175 . - . gene_id "ST05201"; transcript_id "YGR229C"; -chrVII Steinmetz_2013 transcript 952321 953569 . - . gene_id "ST05202"; transcript_id "YGR231C"; -chrVII Steinmetz_2013 transcript 954611 958422 . - . gene_id "ST05203"; transcript_id "YGR233C"; -chrVII Steinmetz_2013 transcript 961273 962116 . - . gene_id "ST05204"; transcript_id "YGR235C"; -chrVII Steinmetz_2013 transcript 962337 962823 . - . gene_id "ST05205"; transcript_id "YGR236C"; -chrVII Steinmetz_2013 transcript 963129 965743 . - . gene_id "ST05206"; transcript_id "YGR237C"; -chrVII Steinmetz_2013 transcript 965918 968695 . - . gene_id "ST05207"; transcript_id "YGR238C"; -chrVII Steinmetz_2013 transcript 969092 970074 . - . gene_id "ST05208"; transcript_id "YGR239C"; -chrVII Steinmetz_2013 transcript 970534 973967 . - . gene_id "ST05209"; transcript_id "YGR240C"; -chrVII Steinmetz_2013 transcript 974798 976751 . - . gene_id "ST05210"; transcript_id "YGR241C"; -chrVII Steinmetz_2013 transcript 977924 979427 . - . gene_id "ST05211"; transcript_id "YGR244C"; -chrVII Steinmetz_2013 transcript 979707 982155 . - . gene_id "ST05212"; transcript_id "YGR245C"; -chrVII Steinmetz_2013 transcript 982317 984286 . - . gene_id "ST05213"; transcript_id "YGR246C"; -chrVII Steinmetz_2013 transcript 984311 984630 . - . gene_id "ST05214"; transcript_id "CUT631"; -chrVII Steinmetz_2013 transcript 991072 993772 . - . gene_id "ST05215"; transcript_id "YGR250C"; -chrVII Steinmetz_2013 transcript 993717 994076 . - . gene_id "ST05216"; transcript_id "CUT632"; -chrVII Steinmetz_2013 transcript 996109 996643 . - . gene_id "ST05217"; transcript_id "CUT633"; -chrVII Steinmetz_2013 transcript 998301 999200 . - . gene_id "ST05218"; transcript_id "YGR253C"; -chrVII Steinmetz_2013 transcript 999619 1000317 . - . gene_id "ST05219"; transcript_id "SUT571"; -chrVII Steinmetz_2013 transcript 1002472 1004055 . - . gene_id "ST05220"; transcript_id "YGR255C"; -chrVII Steinmetz_2013 transcript 1006128 1007415 . - . gene_id "ST05221"; transcript_id "YGR257C"; -chrVII Steinmetz_2013 transcript 1007621 1010788 . - . gene_id "ST05222"; transcript_id "YGR258C"; -chrVII Steinmetz_2013 transcript 1011587 1012269 . - . gene_id "ST05223"; transcript_id "CUT634"; -chrVII Steinmetz_2013 transcript 1012217 1013249 . - . gene_id "ST05224"; transcript_id "YGR259C"; -chrVII Steinmetz_2013 transcript 1014232 1016791 . - . gene_id "ST05225"; transcript_id "YGR261C"; -chrVII Steinmetz_2013 transcript 1016866 1017788 . - . gene_id "ST05226"; transcript_id "YGR262C"; -chrVII Steinmetz_2013 transcript 1017896 1019275 . - . gene_id "ST05227"; transcript_id "YGR263C"; -chrVII Steinmetz_2013 transcript 1019474 1021860 . - . gene_id "ST05228"; transcript_id "YGR264C"; -chrVII Steinmetz_2013 transcript 1021976 1022373 . - . gene_id "ST05229"; transcript_id "SUT572"; -chrVII Steinmetz_2013 transcript 1024916 1025894 . - . gene_id "ST05230"; transcript_id "YGR267C"; -chrVII Steinmetz_2013 transcript 1025798 1026679 . - . gene_id "ST05231"; transcript_id "YGR268C"; -chrVII Steinmetz_2013 transcript 1037696 1038502 . - . gene_id "ST05232"; transcript_id "YGR271C-A"; -chrVII Steinmetz_2013 transcript 1039810 1043103 . - . gene_id "ST05233"; transcript_id "YGR274C"; -chrVII Steinmetz_2013 transcript 1045539 1046574 . - . gene_id "ST05234"; transcript_id "YGR277C"; -chrVII Steinmetz_2013 transcript 1048463 1050053 . - . gene_id "ST05235"; transcript_id "YGR279C"; -chrVII Steinmetz_2013 transcript 1050689 1051753 . - . gene_id "ST05236"; transcript_id "YGR280C"; -chrVII Steinmetz_2013 transcript 1057582 1058752 . - . gene_id "ST05237"; transcript_id "YGR282C"; -chrVII Steinmetz_2013 transcript 1058911 1060086 . - . gene_id "ST05238"; transcript_id "YGR283C"; -chrVII Steinmetz_2013 transcript 1060473 1061630 . - . gene_id "ST05239"; transcript_id "YGR284C"; -chrVII Steinmetz_2013 transcript 1061781 1063166 . - . gene_id "ST05240"; transcript_id "YGR285C"; -chrVII Steinmetz_2013 transcript 1063680 1065059 . - . gene_id "ST05241"; transcript_id "YGR286C"; -chrVII Steinmetz_2013 transcript 1066046 1066971 . - . gene_id "ST05242"; transcript_id "XUT_7R-483"; -chrVII Steinmetz_2013 transcript 1067004 1069126 . - . gene_id "ST05243"; transcript_id "YGR287C"; -chrVII Steinmetz_2013 transcript 1073824 1076150 . - . gene_id "ST05244"; transcript_id "YGR289C"; -chrVII Steinmetz_2013 transcript 2771 3989 . + . gene_id "ST05245"; transcript_id "YGL263W"; -chrVII Steinmetz_2013 transcript 10443 12004 . + . gene_id "ST05246"; transcript_id "YGL258W"; -chrVII Steinmetz_2013 transcript 14661 16524 . + . gene_id "ST05247"; transcript_id "YGL256W"; -chrVII Steinmetz_2013 transcript 20933 22204 . + . gene_id "ST05248"; transcript_id "YGL255W"; -chrVII Steinmetz_2013 transcript 22282 23612 . + . gene_id "ST05249"; transcript_id "YGL254W"; -chrVII Steinmetz_2013 transcript 23888 25581 . + . gene_id "ST05250"; transcript_id "YGL253W"; -chrVII Steinmetz_2013 transcript 31906 32843 . + . gene_id "ST05251"; transcript_id "YGL250W"; -chrVII Steinmetz_2013 transcript 35589 36827 . + . gene_id "ST05252"; transcript_id "YGL248W"; -chrVII Steinmetz_2013 transcript 36931 37623 . + . gene_id "ST05253"; transcript_id "YGL247W"; -chrVII Steinmetz_2013 transcript 39008 41209 . + . gene_id "ST05254"; transcript_id "YGL245W"; -chrVII Steinmetz_2013 transcript 41423 43266 . + . gene_id "ST05255"; transcript_id "YGL244W"; -chrVII Steinmetz_2013 transcript 45423 48561 . + . gene_id "ST05256"; transcript_id "YGL241W"; -chrVII Steinmetz_2013 transcript 49549 52544 . + . gene_id "ST05257"; transcript_id "YGL238W"; -chrVII Steinmetz_2013 transcript 56464 58994 . + . gene_id "ST05258"; transcript_id "YGL234W"; -chrVII Steinmetz_2013 transcript 59076 61919 . + . gene_id "ST05259"; transcript_id "YGL233W"; -chrVII Steinmetz_2013 transcript 62053 63071 . + . gene_id "ST05260"; transcript_id "YGL232W"; -chrVII Steinmetz_2013 transcript 63786 64306 . + . gene_id "ST05261"; transcript_id "SUT110"; -chrVII Steinmetz_2013 transcript 63758 64445 . + . gene_id "ST05262"; transcript_id "XUT_7F-31"; -chrVII Steinmetz_2013 transcript 67552 69483 . + . gene_id "ST05263"; transcript_id "YGL228W"; -chrVII Steinmetz_2013 transcript 69634 72736 . + . gene_id "ST05264"; transcript_id "YGL227W"; -chrVII Steinmetz_2013 transcript 73335 73792 . + . gene_id "ST05265"; transcript_id "YGL226W"; -chrVII Steinmetz_2013 transcript 74454 76538 . + . gene_id "ST05266"; transcript_id "SUT111"; -chrVII Steinmetz_2013 transcript 76853 78032 . + . gene_id "ST05267"; transcript_id "YGL225W"; -chrVII Steinmetz_2013 transcript 81432 82918 . + . gene_id "ST05268"; transcript_id "YGL220W"; -chrVII Steinmetz_2013 transcript 84618 87349 . + . gene_id "ST05269"; transcript_id "YGL216W"; -chrVII Steinmetz_2013 transcript 87509 89733 . + . gene_id "ST05270"; transcript_id "YGL215W"; -chrVII Steinmetz_2013 transcript 91398 92452 . + . gene_id "ST05271"; transcript_id "YGL212W"; -chrVII Steinmetz_2013 transcript 92489 93679 . + . gene_id "ST05272"; transcript_id "YGL211W"; -chrVII Steinmetz_2013 transcript 93772 94566 . + . gene_id "ST05273"; transcript_id "YGL210W"; -chrVII Steinmetz_2013 transcript 95128 95800 . + . gene_id "ST05274"; transcript_id "CUT126"; -chrVII Steinmetz_2013 transcript 95811 97121 . + . gene_id "ST05275"; transcript_id "YGL209W"; -chrVII Steinmetz_2013 transcript 97320 98714 . + . gene_id "ST05276"; transcript_id "YGL208W"; -chrVII Steinmetz_2013 transcript 98863 102205 . + . gene_id "ST05277"; transcript_id "YGL207W"; -chrVII Steinmetz_2013 transcript 107932 110578 . + . gene_id "ST05278"; transcript_id "YGL205W"; -chrVII Steinmetz_2013 transcript 115936 117654 . + . gene_id "ST05279"; transcript_id "YGL202W"; -chrVII Steinmetz_2013 transcript 121204 122150 . + . gene_id "ST05280"; transcript_id "XUT_7F-59"; -chrVII Steinmetz_2013 transcript 123584 124339 . + . gene_id "ST05281"; transcript_id "YGL198W"; -chrVII Steinmetz_2013 transcript 129818 131267 . + . gene_id "ST05282"; transcript_id "YGL196W"; -chrVII Steinmetz_2013 transcript 142200 144087 . + . gene_id "ST05283"; transcript_id "YGL192W"; -chrVII Steinmetz_2013 transcript 144705 145441 . + . gene_id "ST05284"; transcript_id "YGL191W"; -chrVII Steinmetz_2013 transcript 147840 148221 . + . gene_id "ST05285"; transcript_id "CUT128"; -chrVII Steinmetz_2013 transcript 157859 159204 . + . gene_id "ST05286"; transcript_id "YGL181W"; -chrVII Steinmetz_2013 transcript 159502 163108 . + . gene_id "ST05287"; transcript_id "YGL180W"; -chrVII Steinmetz_2013 transcript 166377 166671 . + . gene_id "ST05288"; transcript_id "XUT_7F-76"; -chrVII Steinmetz_2013 transcript 174528 175515 . + . gene_id "ST05289"; transcript_id "YGL174W"; -chrVII Steinmetz_2013 transcript 180668 182211 . + . gene_id "ST05290"; transcript_id "YGL172W"; -chrVII Steinmetz_2013 transcript 182364 184174 . + . gene_id "ST05291"; transcript_id "YGL171W"; -chrVII Steinmetz_2013 transcript 186000 187384 . + . gene_id "ST05292"; transcript_id "YGL169W"; -chrVII Steinmetz_2013 transcript 191108 191958 . + . gene_id "ST05293"; transcript_id "YGL166W"; -chrVII Steinmetz_2013 transcript 197991 199173 . + . gene_id "ST05294"; transcript_id "YGL162W"; -chrVII Steinmetz_2013 transcript 200448 202407 . + . gene_id "ST05295"; transcript_id "YGL160W"; -chrVII Steinmetz_2013 transcript 202714 203921 . + . gene_id "ST05296"; transcript_id "YGL159W"; -chrVII Steinmetz_2013 transcript 206645 208696 . + . gene_id "ST05297"; transcript_id "YGL158W"; -chrVII Steinmetz_2013 transcript 208957 210141 . + . gene_id "ST05298"; transcript_id "YGL157W"; -chrVII Steinmetz_2013 transcript 210334 213815 . + . gene_id "ST05299"; transcript_id "YGL156W"; -chrVII Steinmetz_2013 transcript 213945 215260 . + . gene_id "ST05300"; transcript_id "YGL155W"; -chrVII Steinmetz_2013 transcript 216223 217332 . + . gene_id "ST05301"; transcript_id "YGL153W"; -chrVII Steinmetz_2013 transcript 217469 221007 . + . gene_id "ST05302"; transcript_id "YGL151W"; -chrVII Steinmetz_2013 transcript 226364 227617 . + . gene_id "ST05303"; transcript_id "YGL148W"; -chrVII Steinmetz_2013 transcript 228814 229500 . + . gene_id "ST05304"; transcript_id "CUT133"; -chrVII Steinmetz_2013 transcript 230187 232479 . + . gene_id "ST05305"; transcript_id "YGL145W"; -chrVII Steinmetz_2013 transcript 238292 241208 . + . gene_id "ST05306"; transcript_id "YGL141W"; -chrVII Steinmetz_2013 transcript 245402 248436 . + . gene_id "ST05307"; transcript_id "YGL139W"; -chrVII Steinmetz_2013 transcript 249845 252884 . + . gene_id "ST05308"; transcript_id "YGL137W"; -chrVII Steinmetz_2013 transcript 254577 255391 . + . gene_id "ST05309"; transcript_id "YGL135W"; -chrVII Steinmetz_2013 transcript 255566 257045 . + . gene_id "ST05310"; transcript_id "YGL134W"; -chrVII Steinmetz_2013 transcript 266099 267671 . + . gene_id "ST05311"; transcript_id "YGL130W"; -chrVII Steinmetz_2013 transcript 269332 269674 . + . gene_id "ST05312"; transcript_id "CUT134"; -chrVII Steinmetz_2013 transcript 272381 274601 . + . gene_id "ST05313"; transcript_id "YGL125W"; -chrVII Steinmetz_2013 transcript 276485 277289 . + . gene_id "ST05314"; transcript_id "XUT_7F-130"; -chrVII Steinmetz_2013 transcript 277519 278470 . + . gene_id "ST05315"; transcript_id "YGL123W"; -chrVII Steinmetz_2013 transcript 280774 281311 . + . gene_id "ST05316"; transcript_id "XUT_7F-133"; -chrVII Steinmetz_2013 transcript 284390 286047 . + . gene_id "ST05317"; transcript_id "YGL119W"; -chrVII Steinmetz_2013 transcript 286129 287016 . + . gene_id "ST05318"; transcript_id "CUT136"; -chrVII Steinmetz_2013 transcript 288433 289395 . + . gene_id "ST05319"; transcript_id "YGL117W"; -chrVII Steinmetz_2013 transcript 289663 291739 . + . gene_id "ST05320"; transcript_id "YGL116W"; -chrVII Steinmetz_2013 transcript 291912 293090 . + . gene_id "ST05321"; transcript_id "YGL115W"; -chrVII Steinmetz_2013 transcript 293208 295704 . + . gene_id "ST05322"; transcript_id "YGL114W"; -chrVII Steinmetz_2013 transcript 295904 298186 . + . gene_id "ST05323"; transcript_id "YGL113W"; -chrVII Steinmetz_2013 transcript 299934 301560 . + . gene_id "ST05324"; transcript_id "YGL111W"; -chrVII Steinmetz_2013 transcript 306538 307144 . + . gene_id "ST05325"; transcript_id "YGL106W"; -chrVII Steinmetz_2013 transcript 307414 308664 . + . gene_id "ST05326"; transcript_id "YGL105W"; -chrVII Steinmetz_2013 transcript 308845 310212 . + . gene_id "ST05327"; transcript_id "SUT113"; -chrVII Steinmetz_2013 transcript 310951 312013 . + . gene_id "ST05328"; transcript_id "YGL103W"; -chrVII Steinmetz_2013 transcript 312174 313091 . + . gene_id "ST05329"; transcript_id "YGL101W"; -chrVII Steinmetz_2013 transcript 313197 314371 . + . gene_id "ST05330"; transcript_id "YGL100W"; -chrVII Steinmetz_2013 transcript 314611 316611 . + . gene_id "ST05331"; transcript_id "YGL099W"; -chrVII Steinmetz_2013 transcript 317292 319048 . + . gene_id "ST05332"; transcript_id "YGL098W"; -chrVII Steinmetz_2013 transcript 320017 320444 . + . gene_id "ST05333"; transcript_id "SUT114"; -chrVII Steinmetz_2013 transcript 321740 323346 . + . gene_id "ST05334"; transcript_id "YGL097W"; -chrVII Steinmetz_2013 transcript 325309 326269 . + . gene_id "ST05335"; transcript_id "YGL096W"; -chrVII Steinmetz_2013 transcript 334839 337677 . + . gene_id "ST05336"; transcript_id "YGL093W"; -chrVII Steinmetz_2013 transcript 343287 345259 . + . gene_id "ST05337"; transcript_id "YGL090W"; -chrVII Steinmetz_2013 transcript 349577 350613 . + . gene_id "ST05338"; transcript_id "YGL085W"; -chrVII Steinmetz_2013 transcript 352990 355585 . + . gene_id "ST05339"; transcript_id "YGL083W"; -chrVII Steinmetz_2013 transcript 355737 357109 . + . gene_id "ST05340"; transcript_id "YGL082W"; -chrVII Steinmetz_2013 transcript 357273 358628 . + . gene_id "ST05341"; transcript_id "YGL081W"; -chrVII Steinmetz_2013 transcript 358606 359289 . + . gene_id "ST05342"; transcript_id "YGL080W"; -chrVII Steinmetz_2013 transcript 359411 360198 . + . gene_id "ST05343"; transcript_id "YGL079W"; -chrVII Steinmetz_2013 transcript 362189 364049 . + . gene_id "ST05344"; transcript_id "SUT116"; -chrVII Steinmetz_2013 transcript 366849 367283 . + . gene_id "ST05345"; transcript_id "CUT140"; -chrVII Steinmetz_2013 transcript 368669 371311 . + . gene_id "ST05346"; transcript_id "YGL073W"; -chrVII Steinmetz_2013 transcript 371554 374248 . + . gene_id "ST05347"; transcript_id "YGL071W"; -chrVII Steinmetz_2013 transcript 375040 375781 . + . gene_id "ST05348"; transcript_id "YGL068W"; -chrVII Steinmetz_2013 transcript 376042 377293 . + . gene_id "ST05349"; transcript_id "YGL067W"; -chrVII Steinmetz_2013 transcript 377418 379853 . + . gene_id "ST05350"; transcript_id "YGL066W"; -chrVII Steinmetz_2013 transcript 383460 385163 . + . gene_id "ST05351"; transcript_id "YGL063W"; -chrVII Steinmetz_2013 transcript 385155 388792 . + . gene_id "ST05352"; transcript_id "YGL062W"; -chrVII Steinmetz_2013 transcript 388943 389445 . + . gene_id "ST05353"; transcript_id "SUT117"; -chrVII Steinmetz_2013 transcript 389935 392079 . + . gene_id "ST05354"; transcript_id "YGL060W"; -chrVII Steinmetz_2013 transcript 392200 393847 . + . gene_id "ST05355"; transcript_id "YGL059W"; -chrVII Steinmetz_2013 transcript 393926 394722 . + . gene_id "ST05356"; transcript_id "YGL058W"; -chrVII Steinmetz_2013 transcript 398566 400384 . + . gene_id "ST05357"; transcript_id "YGL055W"; -chrVII Steinmetz_2013 transcript 405753 406794 . + . gene_id "ST05358"; transcript_id "YGL050W"; -chrVII Steinmetz_2013 transcript 411465 412181 . + . gene_id "ST05359"; transcript_id "YGL047W"; -chrVII Steinmetz_2013 transcript 413735 416098 . + . gene_id "ST05360"; transcript_id "YGL045W"; -chrVII Steinmetz_2013 transcript 417461 418634 . + . gene_id "ST05361"; transcript_id "YGL043W"; -chrVII Steinmetz_2013 transcript 418818 419450 . + . gene_id "ST05362"; transcript_id "YGL041W-A"; -chrVII Steinmetz_2013 transcript 422075 422916 . + . gene_id "ST05363"; transcript_id "SUT118"; -chrVII Steinmetz_2013 transcript 423846 425129 . + . gene_id "ST05364"; transcript_id "YGL039W"; -chrVII Steinmetz_2013 transcript 427312 427673 . + . gene_id "ST05365"; transcript_id "XUT_7F-211"; -chrVII Steinmetz_2013 transcript 433683 435202 . + . gene_id "ST05366"; transcript_id "SUT119"; -chrVII Steinmetz_2013 transcript 439033 439739 . + . gene_id "ST05367"; transcript_id "YGL030W"; -chrVII Steinmetz_2013 transcript 440018 440606 . + . gene_id "ST05368"; transcript_id "YGL029W"; -chrVII Steinmetz_2013 transcript 452339 454642 . + . gene_id "ST05369"; transcript_id "YGL022W"; -chrVII Steinmetz_2013 transcript 458080 459096 . + . gene_id "ST05370"; transcript_id "YGL019W"; -chrVII Steinmetz_2013 transcript 459838 461516 . + . gene_id "ST05371"; transcript_id "YGL017W"; -chrVII Steinmetz_2013 transcript 461597 465066 . + . gene_id "ST05372"; transcript_id "YGL016W"; -chrVII Steinmetz_2013 transcript 465720 468896 . + . gene_id "ST05373"; transcript_id "YGL014W"; -chrVII Steinmetz_2013 transcript 472814 474351 . + . gene_id "ST05374"; transcript_id "YGL012W"; -chrVII Steinmetz_2013 transcript 475487 476243 . + . gene_id "ST05375"; transcript_id "YGL010W"; -chrVII Steinmetz_2013 transcript 483223 483969 . + . gene_id "ST05376"; transcript_id "YGL007W"; -chrVII Steinmetz_2013 transcript 494507 495338 . + . gene_id "ST05377"; transcript_id "YGL002W"; -chrVII Steinmetz_2013 transcript 500115 502621 . + . gene_id "ST05378"; transcript_id "YGR003W"; -chrVII Steinmetz_2013 transcript 502878 504572 . + . gene_id "ST05379"; transcript_id "YGR004W"; -chrVII Steinmetz_2013 transcript 506948 508079 . + . gene_id "ST05380"; transcript_id "YGR007W"; -chrVII Steinmetz_2013 transcript 508770 509008 . + . gene_id "ST05381"; transcript_id "CUT145"; -chrVII Steinmetz_2013 transcript 513130 514390 . + . gene_id "ST05382"; transcript_id "YGR012W"; -chrVII Steinmetz_2013 transcript 514531 516642 . + . gene_id "ST05383"; transcript_id "YGR013W"; -chrVII Steinmetz_2013 transcript 516668 520990 . + . gene_id "ST05384"; transcript_id "YGR014W"; -chrVII Steinmetz_2013 transcript 522257 523011 . + . gene_id "ST05385"; transcript_id "YGR016W"; -chrVII Steinmetz_2013 transcript 523628 524794 . + . gene_id "ST05386"; transcript_id "YGR017W"; -chrVII Steinmetz_2013 transcript 525191 526736 . + . gene_id "ST05387"; transcript_id "YGR019W"; -chrVII Steinmetz_2013 transcript 527584 528597 . + . gene_id "ST05388"; transcript_id "YGR021W"; -chrVII Steinmetz_2013 transcript 529112 531218 . + . gene_id "ST05389"; transcript_id "YGR023W"; -chrVII Steinmetz_2013 transcript 532972 533974 . + . gene_id "ST05390"; transcript_id "YGR026W"; -chrVII Steinmetz_2013 transcript 542053 543445 . + . gene_id "ST05391"; transcript_id "YGR028W"; -chrVII Steinmetz_2013 transcript 543553 544300 . + . gene_id "ST05392"; transcript_id "YGR029W"; -chrVII Steinmetz_2013 transcript 545148 545392 . + . gene_id "ST05393"; transcript_id "CUT146"; -chrVII Steinmetz_2013 transcript 546369 548032 . + . gene_id "ST05394"; transcript_id "YGR031W"; -chrVII Steinmetz_2013 transcript 555755 556802 . + . gene_id "ST05395"; transcript_id "YGR034W"; -chrVII Steinmetz_2013 transcript 559202 559387 . + . gene_id "ST05396"; transcript_id "SUT122"; -chrVII Steinmetz_2013 transcript 559202 559586 . + . gene_id "ST05397"; transcript_id "XUT_7F-261"; -chrVII Steinmetz_2013 transcript 560544 561488 . + . gene_id "ST05398"; transcript_id "YGR038W"; -chrVII Steinmetz_2013 transcript 575364 576999 . + . gene_id "ST05399"; transcript_id "YGR040W"; -chrVII Steinmetz_2013 transcript 577172 579250 . + . gene_id "ST05400"; transcript_id "YGR041W"; -chrVII Steinmetz_2013 transcript 579457 580375 . + . gene_id "ST05401"; transcript_id "YGR042W"; -chrVII Steinmetz_2013 transcript 584803 586393 . + . gene_id "ST05402"; transcript_id "YGR046W"; -chrVII Steinmetz_2013 transcript 589771 590991 . + . gene_id "ST05403"; transcript_id "YGR048W"; -chrVII Steinmetz_2013 transcript 591265 592082 . + . gene_id "ST05404"; transcript_id "YGR049W"; -chrVII Steinmetz_2013 transcript 596522 598824 . + . gene_id "ST05405"; transcript_id "YGR054W"; -chrVII Steinmetz_2013 transcript 599384 601256 . + . gene_id "ST05406"; transcript_id "YGR055W"; -chrVII Steinmetz_2013 transcript 601613 604526 . + . gene_id "ST05407"; transcript_id "YGR056W"; -chrVII Steinmetz_2013 transcript 606115 607441 . + . gene_id "ST05408"; transcript_id "YGR058W"; -chrVII Steinmetz_2013 transcript 610481 611510 . + . gene_id "ST05409"; transcript_id "YGR060W"; -chrVII Steinmetz_2013 transcript 616302 617451 . + . gene_id "ST05410"; transcript_id "XUT_7F-281"; -chrVII Steinmetz_2013 transcript 617469 618119 . + . gene_id "ST05411"; transcript_id "YGR064W"; -chrVII Steinmetz_2013 transcript 620206 622355 . + . gene_id "ST05412"; transcript_id "XUT_7F-283"; -chrVII Steinmetz_2013 transcript 634239 635590 . + . gene_id "ST05413"; transcript_id "YGR072W"; -chrVII Steinmetz_2013 transcript 635700 636452 . + . gene_id "ST05414"; transcript_id "YGR074W"; -chrVII Steinmetz_2013 transcript 641995 643089 . + . gene_id "ST05415"; transcript_id "YGR080W"; -chrVII Steinmetz_2013 transcript 643997 644743 . + . gene_id "ST05416"; transcript_id "YGR082W"; -chrVII Steinmetz_2013 transcript 654609 656408 . + . gene_id "ST05417"; transcript_id "YGR088W"; -chrVII Steinmetz_2013 transcript 656701 659900 . + . gene_id "ST05418"; transcript_id "YGR089W"; -chrVII Steinmetz_2013 transcript 662081 666186 . + . gene_id "ST05419"; transcript_id "YGR090W"; -chrVII Steinmetz_2013 transcript 666272 667915 . + . gene_id "ST05420"; transcript_id "YGR091W"; -chrVII Steinmetz_2013 transcript 668130 670072 . + . gene_id "ST05421"; transcript_id "YGR092W"; -chrVII Steinmetz_2013 transcript 670338 671992 . + . gene_id "ST05422"; transcript_id "YGR093W"; -chrVII Steinmetz_2013 transcript 672186 675590 . + . gene_id "ST05423"; transcript_id "YGR094W"; -chrVII Steinmetz_2013 transcript 676574 677636 . + . gene_id "ST05424"; transcript_id "YGR096W"; -chrVII Steinmetz_2013 transcript 678646 682284 . + . gene_id "ST05425"; transcript_id "YGR097W"; -chrVII Steinmetz_2013 transcript 687819 690028 . + . gene_id "ST05426"; transcript_id "YGR099W"; -chrVII Steinmetz_2013 transcript 690178 693226 . + . gene_id "ST05427"; transcript_id "YGR100W"; -chrVII Steinmetz_2013 transcript 693327 694487 . + . gene_id "ST05428"; transcript_id "YGR101W"; -chrVII Steinmetz_2013 transcript 695389 697439 . + . gene_id "ST05429"; transcript_id "YGR103W"; -chrVII Steinmetz_2013 transcript 698541 699010 . + . gene_id "ST05430"; transcript_id "YGR105W"; -chrVII Steinmetz_2013 transcript 700097 700600 . + . gene_id "ST05431"; transcript_id "CUT153"; -chrVII Steinmetz_2013 transcript 702461 703383 . + . gene_id "ST05432"; transcript_id "YGR107W"; -chrVII Steinmetz_2013 transcript 703428 705219 . + . gene_id "ST05433"; transcript_id "YGR108W"; -chrVII Steinmetz_2013 transcript 713658 715146 . + . gene_id "ST05434"; transcript_id "YGR110W"; -chrVII Steinmetz_2013 transcript 715788 717155 . + . gene_id "ST05435"; transcript_id "YGR111W"; -chrVII Steinmetz_2013 transcript 717300 718689 . + . gene_id "ST05436"; transcript_id "YGR112W"; -chrVII Steinmetz_2013 transcript 718831 720150 . + . gene_id "ST05437"; transcript_id "YGR113W"; -chrVII Steinmetz_2013 transcript 720358 724955 . + . gene_id "ST05438"; transcript_id "YGR116W"; -chrVII Steinmetz_2013 transcript 726951 727898 . + . gene_id "ST05439"; transcript_id "YGR118W"; -chrVII Steinmetz_2013 transcript 729951 730600 . + . gene_id "ST05440"; transcript_id "SUT127"; -chrVII Steinmetz_2013 transcript 729966 730770 . + . gene_id "ST05441"; transcript_id "XUT_7F-323"; -chrVII Steinmetz_2013 transcript 731337 733108 . + . gene_id "ST05442"; transcript_id "SUT128"; -chrVII Steinmetz_2013 transcript 733770 735453 . + . gene_id "ST05443"; transcript_id "YGR122W"; -chrVII Steinmetz_2013 transcript 738425 738974 . + . gene_id "ST05444"; transcript_id "SUT129"; -chrVII Steinmetz_2013 transcript 739916 741774 . + . gene_id "ST05445"; transcript_id "YGR124W"; -chrVII Steinmetz_2013 transcript 742255 745595 . + . gene_id "ST05446"; transcript_id "YGR125W"; -chrVII Steinmetz_2013 transcript 746715 747945 . + . gene_id "ST05447"; transcript_id "YGR127W"; -chrVII Steinmetz_2013 transcript 750359 751104 . + . gene_id "ST05448"; transcript_id "YGR129W"; -chrVII Steinmetz_2013 transcript 753035 754617 . + . gene_id "ST05449"; transcript_id "XUT_7F-333"; -chrVII Steinmetz_2013 transcript 754643 755350 . + . gene_id "ST05450"; transcript_id "YGR131W"; -chrVII Steinmetz_2013 transcript 757620 761305 . + . gene_id "ST05451"; transcript_id "YGR134W"; -chrVII Steinmetz_2013 transcript 761300 762247 . + . gene_id "ST05452"; transcript_id "YGR135W"; -chrVII Steinmetz_2013 transcript 770549 772068 . + . gene_id "ST05453"; transcript_id "YGR141W"; -chrVII Steinmetz_2013 transcript 772320 773786 . + . gene_id "ST05454"; transcript_id "YGR142W"; -chrVII Steinmetz_2013 transcript 778168 779111 . + . gene_id "ST05455"; transcript_id "XUT_7F-347"; -chrVII Steinmetz_2013 transcript 781712 783984 . + . gene_id "ST05456"; transcript_id "YGR145W"; -chrVII Steinmetz_2013 transcript 784306 786055 . + . gene_id "ST05457"; transcript_id "SUT132"; -chrVII Steinmetz_2013 transcript 788920 790484 . + . gene_id "ST05458"; transcript_id "YGR149W"; -chrVII Steinmetz_2013 transcript 796071 796937 . + . gene_id "ST05459"; transcript_id "YGR153W"; -chrVII Steinmetz_2013 transcript 798507 800206 . + . gene_id "ST05460"; transcript_id "YGR155W"; -chrVII Steinmetz_2013 transcript 800412 801876 . + . gene_id "ST05461"; transcript_id "YGR156W"; -chrVII Steinmetz_2013 transcript 802187 805155 . + . gene_id "ST05462"; transcript_id "YGR157W"; -chrVII Steinmetz_2013 transcript 810184 810783 . + . gene_id "ST05463"; transcript_id "YGR161W-C"; -chrVII Steinmetz_2013 transcript 811172 811482 . + . gene_id "ST05464"; transcript_id "XUT_7F-368"; -chrVII Steinmetz_2013 transcript 827495 828615 . + . gene_id "ST05465"; transcript_id "YGR163W"; -chrVII Steinmetz_2013 transcript 829062 830286 . + . gene_id "ST05466"; transcript_id "YGR165W"; -chrVII Steinmetz_2013 transcript 830435 832273 . + . gene_id "ST05467"; transcript_id "YGR166W"; -chrVII Steinmetz_2013 transcript 832406 833295 . + . gene_id "ST05468"; transcript_id "YGR167W"; -chrVII Steinmetz_2013 transcript 834159 834592 . + . gene_id "ST05469"; transcript_id "XUT_7F-375"; -chrVII Steinmetz_2013 transcript 837086 840833 . + . gene_id "ST05470"; transcript_id "YGR170W"; -chrVII Steinmetz_2013 transcript 843810 844996 . + . gene_id "ST05471"; transcript_id "YGR173W"; -chrVII Steinmetz_2013 transcript 845859 846853 . + . gene_id "ST05472"; transcript_id "YGR174W-A"; -chrVII Steinmetz_2013 transcript 858238 858785 . + . gene_id "ST05473"; transcript_id "YGR181W"; -chrVII Steinmetz_2013 transcript 858986 859721 . + . gene_id "ST05474"; transcript_id "XUT_7F-391"; -chrVII Steinmetz_2013 transcript 865928 866316 . + . gene_id "ST05475"; transcript_id "SUT136"; -chrVII Steinmetz_2013 transcript 867764 870033 . + . gene_id "ST05476"; transcript_id "YGR186W"; -chrVII Steinmetz_2013 transcript 880191 882387 . + . gene_id "ST05477"; transcript_id "YGR191W"; -chrVII Steinmetz_2013 transcript 883966 884485 . + . gene_id "ST05478"; transcript_id "XUT_7F-400"; -chrVII Steinmetz_2013 transcript 886013 887084 . + . gene_id "ST05479"; transcript_id "XUT_7F-402"; -chrVII Steinmetz_2013 transcript 888762 889701 . + . gene_id "ST05480"; transcript_id "YGR195W"; -chrVII Steinmetz_2013 transcript 894656 897242 . + . gene_id "ST05481"; transcript_id "YGR198W"; -chrVII Steinmetz_2013 transcript 897461 899782 . + . gene_id "ST05482"; transcript_id "YGR199W"; -chrVII Steinmetz_2013 transcript 899809 900109 . + . gene_id "ST05483"; transcript_id "XUT_7F-413"; -chrVII Steinmetz_2013 transcript 902549 903600 . + . gene_id "ST05484"; transcript_id "SUT137"; -chrVII Steinmetz_2013 transcript 905192 905868 . + . gene_id "ST05485"; transcript_id "YGR203W"; -chrVII Steinmetz_2013 transcript 905895 908860 . + . gene_id "ST05486"; transcript_id "YGR204W"; -chrVII Steinmetz_2013 transcript 909087 910210 . + . gene_id "ST05487"; transcript_id "YGR205W"; -chrVII Steinmetz_2013 transcript 910408 910824 . + . gene_id "ST05488"; transcript_id "YGR206W"; -chrVII Steinmetz_2013 transcript 911838 912923 . + . gene_id "ST05489"; transcript_id "YGR208W"; -chrVII Steinmetz_2013 transcript 915186 916900 . + . gene_id "ST05490"; transcript_id "YGR211W"; -chrVII Steinmetz_2013 transcript 917036 919553 . + . gene_id "ST05491"; transcript_id "YGR212W"; -chrVII Steinmetz_2013 transcript 920556 921921 . + . gene_id "ST05492"; transcript_id "YGR214W"; -chrVII Steinmetz_2013 transcript 922124 922599 . + . gene_id "ST05493"; transcript_id "YGR215W"; -chrVII Steinmetz_2013 transcript 932242 935994 . + . gene_id "ST05494"; transcript_id "YGR218W"; -chrVII Steinmetz_2013 transcript 937130 938284 . + . gene_id "ST05495"; transcript_id "SUT138"; -chrVII Steinmetz_2013 transcript 939923 940896 . + . gene_id "ST05496"; transcript_id "YGR222W"; -chrVII Steinmetz_2013 transcript 942769 944879 . + . gene_id "ST05497"; transcript_id "YGR224W"; -chrVII Steinmetz_2013 transcript 945038 947138 . + . gene_id "ST05498"; transcript_id "YGR225W"; -chrVII Steinmetz_2013 transcript 947341 949086 . + . gene_id "ST05499"; transcript_id "YGR227W"; -chrVII Steinmetz_2013 transcript 951762 952425 . + . gene_id "ST05500"; transcript_id "YGR230W"; -chrVII Steinmetz_2013 transcript 953938 954701 . + . gene_id "ST05501"; transcript_id "YGR232W"; -chrVII Steinmetz_2013 transcript 959884 961382 . + . gene_id "ST05502"; transcript_id "YGR234W"; -chrVII Steinmetz_2013 transcript 968847 969188 . + . gene_id "ST05503"; transcript_id "SUT139"; -chrVII Steinmetz_2013 transcript 968842 970622 . + . gene_id "ST05504"; transcript_id "XUT_7F-437"; -chrVII Steinmetz_2013 transcript 969353 970636 . + . gene_id "ST05505"; transcript_id "SUT140"; -chrVII Steinmetz_2013 transcript 974267 974849 . + . gene_id "ST05506"; transcript_id "SUT141"; -chrVII Steinmetz_2013 transcript 974267 975195 . + . gene_id "ST05507"; transcript_id "XUT_7F-439"; -chrVII Steinmetz_2013 transcript 974803 975643 . + . gene_id "ST05508"; transcript_id "CUT164"; -chrVII Steinmetz_2013 transcript 977192 977890 . + . gene_id "ST05509"; transcript_id "YGR243W"; -chrVII Steinmetz_2013 transcript 984817 985776 . + . gene_id "ST05510"; transcript_id "YGR247W"; -chrVII Steinmetz_2013 transcript 985954 986836 . + . gene_id "ST05511"; transcript_id "YGR248W"; -chrVII Steinmetz_2013 transcript 987577 989921 . + . gene_id "ST05512"; transcript_id "YGR249W"; -chrVII Steinmetz_2013 transcript 994305 994998 . + . gene_id "ST05513"; transcript_id "SUT142"; -chrVII Steinmetz_2013 transcript 995606 996613 . + . gene_id "ST05514"; transcript_id "YGR251W"; -chrVII Steinmetz_2013 transcript 996821 998396 . + . gene_id "ST05515"; transcript_id "YGR252W"; -chrVII Steinmetz_2013 transcript 1000890 1002388 . + . gene_id "ST05516"; transcript_id "YGR254W"; -chrVII Steinmetz_2013 transcript 1004568 1006214 . + . gene_id "ST05517"; transcript_id "YGR256W"; -chrVII Steinmetz_2013 transcript 1012287 1014214 . + . gene_id "ST05518"; transcript_id "YGR260W"; -chrVII Steinmetz_2013 transcript 1017977 1019509 . + . gene_id "ST05519"; transcript_id "CUT167"; -chrVII Steinmetz_2013 transcript 1022600 1024876 . + . gene_id "ST05520"; transcript_id "YGR266W"; -chrVII Steinmetz_2013 transcript 1046721 1048534 . + . gene_id "ST05521"; transcript_id "YGR278W"; -chrVII Steinmetz_2013 transcript 1052598 1057412 . + . gene_id "ST05522"; transcript_id "YGR281W"; -chrVII Steinmetz_2013 transcript 1059042 1059536 . + . gene_id "ST05523"; transcript_id "SUT145"; -chrVII Steinmetz_2013 transcript 1060322 1060838 . + . gene_id "ST05524"; transcript_id "SUT146"; -chrVII Steinmetz_2013 transcript 1070223 1072203 . + . gene_id "ST05525"; transcript_id "YGR288W"; -chrVII Steinmetz_2013 transcript 1076571 1078472 . + . gene_id "ST05526"; transcript_id "YGR292W"; -chrVII Steinmetz_2013 transcript 1081222 1081485 . + . gene_id "ST05527"; transcript_id "XUT_7F-478"; -chrVII Steinmetz_2013 transcript 1082923 1083682 . + . gene_id "ST05528"; transcript_id "XUT_7F-480"; -chrVIII Steinmetz_2013 transcript 8200 10237 . - . gene_id "ST05529"; transcript_id "YHL047C"; -chrVIII Steinmetz_2013 transcript 11792 13291 . - . gene_id "ST05530"; transcript_id "YHL046C"; -chrVIII Steinmetz_2013 transcript 14771 15887 . - . gene_id "ST05531"; transcript_id "SUT573"; -chrVIII Steinmetz_2013 transcript 18668 21157 . - . gene_id "ST05532"; transcript_id "YHL040C"; -chrVIII Steinmetz_2013 transcript 23476 25544 . - . gene_id "ST05533"; transcript_id "YHL038C"; -chrVIII Steinmetz_2013 transcript 25767 26506 . - . gene_id "ST05534"; transcript_id "YHL037C"; -chrVIII Steinmetz_2013 transcript 33041 34196 . - . gene_id "ST05535"; transcript_id "YHL034C"; -chrVIII Steinmetz_2013 transcript 34764 36045 . - . gene_id "ST05536"; transcript_id "YHL033C"; -chrVIII Steinmetz_2013 transcript 36318 38548 . - . gene_id "ST05537"; transcript_id "YHL032C"; -chrVIII Steinmetz_2013 transcript 38755 39511 . - . gene_id "ST05538"; transcript_id "YHL031C"; -chrVIII Steinmetz_2013 transcript 45863 47994 . - . gene_id "ST05539"; transcript_id "YHL029C"; -chrVIII Steinmetz_2013 transcript 50028 50578 . - . gene_id "ST05540"; transcript_id "CUT637"; -chrVIII Steinmetz_2013 transcript 53097 54241 . - . gene_id "ST05541"; transcript_id "YHL026C"; -chrVIII Steinmetz_2013 transcript 56513 59029 . - . gene_id "ST05542"; transcript_id "SUT574"; -chrVIII Steinmetz_2013 transcript 59014 62595 . - . gene_id "ST05543"; transcript_id "YHL023C"; -chrVIII Steinmetz_2013 transcript 64378 65919 . - . gene_id "ST05544"; transcript_id "YHL021C"; -chrVIII Steinmetz_2013 transcript 66116 67540 . - . gene_id "ST05545"; transcript_id "YHL020C"; -chrVIII Steinmetz_2013 transcript 67643 69582 . - . gene_id "ST05546"; transcript_id "YHL019C"; -chrVIII Steinmetz_2013 transcript 71923 74501 . - . gene_id "ST05547"; transcript_id "YHL016C"; -chrVIII Steinmetz_2013 transcript 76037 77314 . - . gene_id "ST05548"; transcript_id "YHL014C"; -chrVIII Steinmetz_2013 transcript 77317 78388 . - . gene_id "ST05549"; transcript_id "YHL013C"; -chrVIII Steinmetz_2013 transcript 80433 81716 . - . gene_id "ST05550"; transcript_id "YHL011C"; -chrVIII Steinmetz_2013 transcript 81761 83757 . - . gene_id "ST05551"; transcript_id "YHL010C"; -chrVIII Steinmetz_2013 transcript 83818 85175 . - . gene_id "ST05552"; transcript_id "YHL009C"; -chrVIII Steinmetz_2013 transcript 92455 94678 . - . gene_id "ST05553"; transcript_id "YHL008C"; -chrVIII Steinmetz_2013 transcript 94977 98074 . - . gene_id "ST05554"; transcript_id "YHL007C"; -chrVIII Steinmetz_2013 transcript 98012 98808 . - . gene_id "ST05555"; transcript_id "YHL006C"; -chrVIII Steinmetz_2013 transcript 100395 102017 . - . gene_id "ST05556"; transcript_id "YHL003C"; -chrVIII Steinmetz_2013 transcript 103326 103976 . - . gene_id "ST05557"; transcript_id "SUT576"; -chrVIII Steinmetz_2013 transcript 105123 105416 . - . gene_id "ST05558"; transcript_id "XUT_8R-47"; -chrVIII Steinmetz_2013 transcript 109942 111328 . - . gene_id "ST05559"; transcript_id "YHR003C"; -chrVIII Steinmetz_2013 transcript 113398 114961 . - . gene_id "ST05560"; transcript_id "YHR005C"; -chrVIII Steinmetz_2013 transcript 115479 115935 . - . gene_id "ST05561"; transcript_id "YHR005C-A"; -chrVIII Steinmetz_2013 transcript 119809 121825 . - . gene_id "ST05562"; transcript_id "YHR007C"; -chrVIII Steinmetz_2013 transcript 122816 123624 . - . gene_id "ST05563"; transcript_id "YHR008C"; -chrVIII Steinmetz_2013 transcript 124016 125915 . - . gene_id "ST05564"; transcript_id "YHR009C"; -chrVIII Steinmetz_2013 transcript 130634 131473 . - . gene_id "ST05565"; transcript_id "YHR013C"; -chrVIII Steinmetz_2013 transcript 131739 132901 . - . gene_id "ST05566"; transcript_id "SUT578"; -chrVIII Steinmetz_2013 transcript 136743 138490 . - . gene_id "ST05567"; transcript_id "YHR016C"; -chrVIII Steinmetz_2013 transcript 139859 141457 . - . gene_id "ST05568"; transcript_id "YHR018C"; -chrVIII Steinmetz_2013 transcript 141791 143600 . - . gene_id "ST05569"; transcript_id "YHR019C"; -chrVIII Steinmetz_2013 transcript 147797 148704 . - . gene_id "ST05570"; transcript_id "YHR021C"; -chrVIII Steinmetz_2013 transcript 149212 150406 . - . gene_id "ST05571"; transcript_id "YHR022C"; -chrVIII Steinmetz_2013 transcript 150493 151340 . - . gene_id "ST05572"; transcript_id "YHR022C-A"; -chrVIII Steinmetz_2013 transcript 157521 159203 . - . gene_id "ST05573"; transcript_id "YHR024C"; -chrVIII Steinmetz_2013 transcript 161584 164764 . - . gene_id "ST05574"; transcript_id "YHR027C"; -chrVIII Steinmetz_2013 transcript 164874 167451 . - . gene_id "ST05575"; transcript_id "YHR028C"; -chrVIII Steinmetz_2013 transcript 167595 168574 . - . gene_id "ST05576"; transcript_id "YHR029C"; -chrVIII Steinmetz_2013 transcript 168749 170548 . - . gene_id "ST05577"; transcript_id "YHR030C"; -chrVIII Steinmetz_2013 transcript 170688 173011 . - . gene_id "ST05578"; transcript_id "YHR031C"; -chrVIII Steinmetz_2013 transcript 176946 178033 . - . gene_id "ST05579"; transcript_id "YHR034C"; -chrVIII Steinmetz_2013 transcript 180967 181720 . - . gene_id "ST05580"; transcript_id "XUT_8R-87"; -chrVIII Steinmetz_2013 transcript 184766 186919 . - . gene_id "ST05581"; transcript_id "YHR039C"; -chrVIII Steinmetz_2013 transcript 187060 187706 . - . gene_id "ST05582"; transcript_id "YHR039C-A"; -chrVIII Steinmetz_2013 transcript 189033 189875 . - . gene_id "ST05583"; transcript_id "YHR041C"; -chrVIII Steinmetz_2013 transcript 189948 190293 . - . gene_id "ST05584"; transcript_id "CUT642"; -chrVIII Steinmetz_2013 transcript 192718 193647 . - . gene_id "ST05585"; transcript_id "YHR043C"; -chrVIII Steinmetz_2013 transcript 193818 194858 . - . gene_id "ST05586"; transcript_id "YHR044C"; -chrVIII Steinmetz_2013 transcript 197228 198316 . - . gene_id "ST05587"; transcript_id "YHR046C"; -chrVIII Steinmetz_2013 transcript 198592 201338 . - . gene_id "ST05588"; transcript_id "YHR047C"; -chrVIII Steinmetz_2013 transcript 201829 203843 . - . gene_id "ST05589"; transcript_id "SUT579"; -chrVIII Steinmetz_2013 transcript 218152 218859 . - . gene_id "ST05590"; transcript_id "YHR057C"; -chrVIII Steinmetz_2013 transcript 218940 219928 . - . gene_id "ST05591"; transcript_id "YHR058C"; -chrVIII Steinmetz_2013 transcript 221259 222504 . - . gene_id "ST05592"; transcript_id "YHR061C"; -chrVIII Steinmetz_2013 transcript 222794 223770 . - . gene_id "ST05593"; transcript_id "YHR062C"; -chrVIII Steinmetz_2013 transcript 223953 225199 . - . gene_id "ST05594"; transcript_id "YHR063C"; -chrVIII Steinmetz_2013 transcript 225429 227183 . - . gene_id "ST05595"; transcript_id "YHR064C"; -chrVIII Steinmetz_2013 transcript 227422 229080 . - . gene_id "ST05596"; transcript_id "YHR065C"; -chrVIII Steinmetz_2013 transcript 231297 231851 . - . gene_id "ST05597"; transcript_id "CUT644"; -chrVIII Steinmetz_2013 transcript 233436 234672 . - . gene_id "ST05598"; transcript_id "YHR069C"; -chrVIII Steinmetz_2013 transcript 238094 238869 . - . gene_id "ST05599"; transcript_id "XUT_8R-113"; -chrVIII Steinmetz_2013 transcript 238316 238857 . - . gene_id "ST05600"; transcript_id "CUT645"; -chrVIII Steinmetz_2013 transcript 238846 239245 . - . gene_id "ST05601"; transcript_id "YHR071C-A"; -chrVIII Steinmetz_2013 transcript 241897 242332 . - . gene_id "ST05602"; transcript_id "XUT_8R-115"; -chrVIII Steinmetz_2013 transcript 245413 245940 . - . gene_id "ST05603"; transcript_id "YHR073C-B"; -chrVIII Steinmetz_2013 transcript 248373 249692 . - . gene_id "ST05604"; transcript_id "YHR075C"; -chrVIII Steinmetz_2013 transcript 249805 250931 . - . gene_id "ST05605"; transcript_id "SUT581"; -chrVIII Steinmetz_2013 transcript 250579 251412 . - . gene_id "ST05606"; transcript_id "XUT_8R-118"; -chrVIII Steinmetz_2013 transcript 252284 255812 . - . gene_id "ST05607"; transcript_id "YHR077C"; -chrVIII Steinmetz_2013 transcript 255937 256180 . - . gene_id "ST05608"; transcript_id "SUT582"; -chrVIII Steinmetz_2013 transcript 255942 256371 . - . gene_id "ST05609"; transcript_id "XUT_8R-125"; -chrVIII Steinmetz_2013 transcript 258021 261844 . - . gene_id "ST05610"; transcript_id "YHR079C"; -chrVIII Steinmetz_2013 transcript 268244 272394 . - . gene_id "ST05611"; transcript_id "YHR082C"; -chrVIII Steinmetz_2013 transcript 271852 272394 . - . gene_id "ST05612"; transcript_id "XUT_8R-129"; -chrVIII Steinmetz_2013 transcript 280121 281250 . - . gene_id "ST05613"; transcript_id "SUT583"; -chrVIII Steinmetz_2013 transcript 282491 283330 . - . gene_id "ST05614"; transcript_id "YHR089C"; -chrVIII Steinmetz_2013 transcript 283528 284661 . - . gene_id "ST05615"; transcript_id "YHR090C"; -chrVIII Steinmetz_2013 transcript 284746 286807 . - . gene_id "ST05616"; transcript_id "YHR091C"; -chrVIII Steinmetz_2013 transcript 287023 288886 . - . gene_id "ST05617"; transcript_id "YHR092C"; -chrVIII Steinmetz_2013 transcript 290801 292657 . - . gene_id "ST05618"; transcript_id "YHR094C"; -chrVIII Steinmetz_2013 transcript 297285 298732 . - . gene_id "ST05619"; transcript_id "YHR097C"; -chrVIII Steinmetz_2013 transcript 299003 302014 . - . gene_id "ST05620"; transcript_id "YHR098C"; -chrVIII Steinmetz_2013 transcript 313994 314719 . - . gene_id "ST05621"; transcript_id "YHR100C"; -chrVIII Steinmetz_2013 transcript 314694 315985 . - . gene_id "ST05622"; transcript_id "YHR101C"; -chrVIII Steinmetz_2013 transcript 317397 319455 . - . gene_id "ST05623"; transcript_id "XUT_8R-157"; -chrVIII Steinmetz_2013 transcript 326650 328094 . - . gene_id "ST05624"; transcript_id "YHR107C"; -chrVIII Steinmetz_2013 transcript 334371 335695 . - . gene_id "ST05625"; transcript_id "YHR112C"; -chrVIII Steinmetz_2013 transcript 336267 337837 . - . gene_id "ST05626"; transcript_id "SUT585"; -chrVIII Steinmetz_2013 transcript 344249 345656 . - . gene_id "ST05627"; transcript_id "YHR118C"; -chrVIII Steinmetz_2013 transcript 347634 349332 . - . gene_id "ST05628"; transcript_id "XUT_8R-171-m"; -chrVIII Steinmetz_2013 transcript 354126 354583 . - . gene_id "ST05629"; transcript_id "SUT586"; -chrVIII Steinmetz_2013 transcript 356456 358125 . - . gene_id "ST05630"; transcript_id "SUT587"; -chrVIII Steinmetz_2013 transcript 362897 364244 . - . gene_id "ST05631"; transcript_id "YHR129C"; -chrVIII Steinmetz_2013 transcript 368383 369836 . - . gene_id "ST05632"; transcript_id "YHR132C"; -chrVIII Steinmetz_2013 transcript 370517 371606 . - . gene_id "ST05633"; transcript_id "YHR133C"; -chrVIII Steinmetz_2013 transcript 372592 374431 . - . gene_id "ST05634"; transcript_id "YHR135C"; -chrVIII Steinmetz_2013 transcript 374560 375293 . - . gene_id "ST05635"; transcript_id "YHR136C"; -chrVIII Steinmetz_2013 transcript 377249 377771 . - . gene_id "ST05636"; transcript_id "YHR138C"; -chrVIII Steinmetz_2013 transcript 377925 379210 . - . gene_id "ST05637"; transcript_id "YHR139C"; -chrVIII Steinmetz_2013 transcript 381868 382774 . - . gene_id "ST05638"; transcript_id "YHR141C"; -chrVIII Steinmetz_2013 transcript 383364 384455 . - . gene_id "ST05639"; transcript_id "SUT588"; -chrVIII Steinmetz_2013 transcript 386601 386989 . - . gene_id "ST05640"; transcript_id "XUT_8R-193"; -chrVIII Steinmetz_2013 transcript 386759 386998 . - . gene_id "ST05641"; transcript_id "SUT590"; -chrVIII Steinmetz_2013 transcript 387708 388758 . - . gene_id "ST05642"; transcript_id "YHR144C"; -chrVIII Steinmetz_2013 transcript 392509 393318 . - . gene_id "ST05643"; transcript_id "YHR147C"; -chrVIII Steinmetz_2013 transcript 394294 396805 . - . gene_id "ST05644"; transcript_id "YHR149C"; -chrVIII Steinmetz_2013 transcript 399131 401016 . - . gene_id "ST05645"; transcript_id "YHR151C"; -chrVIII Steinmetz_2013 transcript 401975 402699 . - . gene_id "ST05646"; transcript_id "YHR153C"; -chrVIII Steinmetz_2013 transcript 406157 406768 . - . gene_id "ST05647"; transcript_id "SUT591"; -chrVIII Steinmetz_2013 transcript 411357 412447 . - . gene_id "ST05648"; transcript_id "YHR156C"; -chrVIII Steinmetz_2013 transcript 420282 422424 . - . gene_id "ST05649"; transcript_id "YHR161C"; -chrVIII Steinmetz_2013 transcript 437072 439118 . - . gene_id "ST05650"; transcript_id "YHR166C"; -chrVIII Steinmetz_2013 transcript 456408 458474 . - . gene_id "ST05651"; transcript_id "SUT592"; -chrVIII Steinmetz_2013 transcript 465126 465489 . - . gene_id "ST05652"; transcript_id "SUT593"; -chrVIII Steinmetz_2013 transcript 466293 467071 . - . gene_id "ST05653"; transcript_id "YHR180C-B"; -chrVIII Steinmetz_2013 transcript 470852 471533 . - . gene_id "ST05654"; transcript_id "YHR182C-A"; -chrVIII Steinmetz_2013 transcript 481936 483866 . - . gene_id "ST05655"; transcript_id "YHR188C"; -chrVIII Steinmetz_2013 transcript 486131 486667 . - . gene_id "ST05656"; transcript_id "YHR191C"; -chrVIII Steinmetz_2013 transcript 487648 488268 . - . gene_id "ST05657"; transcript_id "YHR193C"; -chrVIII Steinmetz_2013 transcript 488392 489082 . - . gene_id "ST05658"; transcript_id "YHR193C-A"; -chrVIII Steinmetz_2013 transcript 490670 491630 . - . gene_id "ST05659"; transcript_id "SUT596"; -chrVIII Steinmetz_2013 transcript 496194 497280 . - . gene_id "ST05660"; transcript_id "YHR198C"; -chrVIII Steinmetz_2013 transcript 497399 498443 . - . gene_id "ST05661"; transcript_id "YHR199C"; -chrVIII Steinmetz_2013 transcript 499884 501166 . - . gene_id "ST05662"; transcript_id "YHR201C"; -chrVIII Steinmetz_2013 transcript 504342 505569 . - . gene_id "ST05663"; transcript_id "YHR203C"; -chrVIII Steinmetz_2013 transcript 507719 508703 . - . gene_id "ST05664"; transcript_id "SUT597"; -chrVIII Steinmetz_2013 transcript 511820 512131 . - . gene_id "ST05665"; transcript_id "SUT598"; -chrVIII Steinmetz_2013 transcript 519271 520281 . - . gene_id "ST05666"; transcript_id "SUT599"; -chrVIII Steinmetz_2013 transcript 520633 521759 . - . gene_id "ST05667"; transcript_id "YHR210C"; -chrVIII Steinmetz_2013 transcript 6394 7626 . + . gene_id "ST05668"; transcript_id "YHL048W"; -chrVIII Steinmetz_2013 transcript 11150 11562 . + . gene_id "ST05669"; transcript_id "XUT_8F-2"; -chrVIII Steinmetz_2013 transcript 12096 12882 . + . gene_id "ST05670"; transcript_id "YHL045W"; -chrVIII Steinmetz_2013 transcript 13496 14346 . + . gene_id "ST05671"; transcript_id "YHL044W"; -chrVIII Steinmetz_2013 transcript 21731 23608 . + . gene_id "ST05672"; transcript_id "YHL039W"; -chrVIII Steinmetz_2013 transcript 26211 27948 . + . gene_id "ST05673"; transcript_id "YHL036W"; -chrVIII Steinmetz_2013 transcript 48694 50660 . + . gene_id "ST05674"; transcript_id "YHL028W"; -chrVIII Steinmetz_2013 transcript 51013 53195 . + . gene_id "ST05675"; transcript_id "YHL027W"; -chrVIII Steinmetz_2013 transcript 54793 55952 . + . gene_id "ST05676"; transcript_id "YHL025W"; -chrVIII Steinmetz_2013 transcript 59128 60044 . + . gene_id "ST05677"; transcript_id "SUT148"; -chrVIII Steinmetz_2013 transcript 62946 64322 . + . gene_id "ST05678"; transcript_id "XUT_8F-22"; -chrVIII Steinmetz_2013 transcript 70263 72009 . + . gene_id "ST05679"; transcript_id "YHL017W"; -chrVIII Steinmetz_2013 transcript 75374 75834 . + . gene_id "ST05680"; transcript_id "YHL015W"; -chrVIII Steinmetz_2013 transcript 97646 98189 . + . gene_id "ST05681"; transcript_id "YHL006W-A"; -chrVIII Steinmetz_2013 transcript 98418 98931 . + . gene_id "ST05682"; transcript_id "SUT151"; -chrVIII Steinmetz_2013 transcript 99131 100504 . + . gene_id "ST05683"; transcript_id "YHL004W"; -chrVIII Steinmetz_2013 transcript 102565 104062 . + . gene_id "ST05684"; transcript_id "YHL002W"; -chrVIII Steinmetz_2013 transcript 104256 105219 . + . gene_id "ST05685"; transcript_id "YHL001W"; -chrVIII Steinmetz_2013 transcript 106032 107597 . + . gene_id "ST05686"; transcript_id "YHR001W"; -chrVIII Steinmetz_2013 transcript 107760 108361 . + . gene_id "ST05687"; transcript_id "YHR001W-A"; -chrVIII Steinmetz_2013 transcript 108664 110023 . + . gene_id "ST05688"; transcript_id "YHR002W"; -chrVIII Steinmetz_2013 transcript 117768 119575 . + . gene_id "ST05689"; transcript_id "YHR006W"; -chrVIII Steinmetz_2013 transcript 126489 127613 . + . gene_id "ST05690"; transcript_id "YHR010W"; -chrVIII Steinmetz_2013 transcript 127772 129182 . + . gene_id "ST05691"; transcript_id "YHR011W"; -chrVIII Steinmetz_2013 transcript 129460 130619 . + . gene_id "ST05692"; transcript_id "YHR012W"; -chrVIII Steinmetz_2013 transcript 138686 139928 . + . gene_id "ST05693"; transcript_id "YHR017W"; -chrVIII Steinmetz_2013 transcript 143923 146146 . + . gene_id "ST05694"; transcript_id "YHR020W"; -chrVIII Steinmetz_2013 transcript 146633 147854 . + . gene_id "ST05695"; transcript_id "XUT_8F-65"; -chrVIII Steinmetz_2013 transcript 151018 151395 . + . gene_id "ST05696"; transcript_id "SUT154"; -chrVIII Steinmetz_2013 transcript 159402 160597 . + . gene_id "ST05697"; transcript_id "YHR025W"; -chrVIII Steinmetz_2013 transcript 160729 161695 . + . gene_id "ST05698"; transcript_id "YHR026W"; -chrVIII Steinmetz_2013 transcript 164975 166854 . + . gene_id "ST05699"; transcript_id "SUT155"; -chrVIII Steinmetz_2013 transcript 165113 167138 . + . gene_id "ST05700"; transcript_id "XUT_8F-72"; -chrVIII Steinmetz_2013 transcript 175144 175502 . + . gene_id "ST05701"; transcript_id "YHR032W-A"; -chrVIII Steinmetz_2013 transcript 175533 177091 . + . gene_id "ST05702"; transcript_id "YHR033W"; -chrVIII Steinmetz_2013 transcript 178170 180198 . + . gene_id "ST05703"; transcript_id "YHR035W"; -chrVIII Steinmetz_2013 transcript 180209 181972 . + . gene_id "ST05704"; transcript_id "YHR036W"; -chrVIII Steinmetz_2013 transcript 181921 183873 . + . gene_id "ST05705"; transcript_id "YHR037W"; -chrVIII Steinmetz_2013 transcript 184052 184862 . + . gene_id "ST05706"; transcript_id "YHR038W"; -chrVIII Steinmetz_2013 transcript 187908 189097 . + . gene_id "ST05707"; transcript_id "YHR040W"; -chrVIII Steinmetz_2013 transcript 189154 190124 . + . gene_id "ST05708"; transcript_id "SUT156"; -chrVIII Steinmetz_2013 transcript 190503 192694 . + . gene_id "ST05709"; transcript_id "YHR042W"; -chrVIII Steinmetz_2013 transcript 193864 194193 . + . gene_id "ST05710"; transcript_id "CUT177"; -chrVIII Steinmetz_2013 transcript 195421 197368 . + . gene_id "ST05711"; transcript_id "YHR045W"; -chrVIII Steinmetz_2013 transcript 198651 199142 . + . gene_id "ST05712"; transcript_id "CUT178"; -chrVIII Steinmetz_2013 transcript 201967 203688 . + . gene_id "ST05713"; transcript_id "SUT157"; -chrVIII Steinmetz_2013 transcript 201878 204181 . + . gene_id "ST05714"; transcript_id "XUT_8F-92"; -chrVIII Steinmetz_2013 transcript 204554 206390 . + . gene_id "ST05715"; transcript_id "YHR048W"; -chrVIII Steinmetz_2013 transcript 206420 207327 . + . gene_id "ST05716"; transcript_id "YHR049W"; -chrVIII Steinmetz_2013 transcript 207471 209370 . + . gene_id "ST05717"; transcript_id "YHR050W"; -chrVIII Steinmetz_2013 transcript 209656 210426 . + . gene_id "ST05718"; transcript_id "YHR051W"; -chrVIII Steinmetz_2013 transcript 210810 212112 . + . gene_id "ST05719"; transcript_id "YHR052W"; -chrVIII Steinmetz_2013 transcript 217226 218227 . + . gene_id "ST05720"; transcript_id "YHR056W-A"; -chrVIII Steinmetz_2013 transcript 220056 220601 . + . gene_id "ST05721"; transcript_id "YHR059W"; -chrVIII Steinmetz_2013 transcript 220695 221382 . + . gene_id "ST05722"; transcript_id "YHR060W"; -chrVIII Steinmetz_2013 transcript 221445 222896 . + . gene_id "ST05723"; transcript_id "XUT_8F-102"; -chrVIII Steinmetz_2013 transcript 222879 224015 . + . gene_id "ST05724"; transcript_id "XUT_8F-104"; -chrVIII Steinmetz_2013 transcript 229312 230827 . + . gene_id "ST05725"; transcript_id "YHR066W"; -chrVIII Steinmetz_2013 transcript 230937 231983 . + . gene_id "ST05726"; transcript_id "YHR067W"; -chrVIII Steinmetz_2013 transcript 232077 233437 . + . gene_id "ST05727"; transcript_id "YHR068W"; -chrVIII Steinmetz_2013 transcript 234863 236728 . + . gene_id "ST05728"; transcript_id "YHR070W"; -chrVIII Steinmetz_2013 transcript 239032 241407 . + . gene_id "ST05729"; transcript_id "YHR072W"; -chrVIII Steinmetz_2013 transcript 241629 241998 . + . gene_id "ST05730"; transcript_id "YHR072W-A"; -chrVIII Steinmetz_2013 transcript 246127 248489 . + . gene_id "ST05731"; transcript_id "YHR074W"; -chrVIII Steinmetz_2013 transcript 251056 252364 . + . gene_id "ST05732"; transcript_id "YHR076W"; -chrVIII Steinmetz_2013 transcript 256332 258123 . + . gene_id "ST05733"; transcript_id "YHR078W"; -chrVIII Steinmetz_2013 transcript 267518 268215 . + . gene_id "ST05734"; transcript_id "YHR081W"; -chrVIII Steinmetz_2013 transcript 272617 273693 . + . gene_id "ST05735"; transcript_id "YHR083W"; -chrVIII Steinmetz_2013 transcript 273859 276544 . + . gene_id "ST05736"; transcript_id "YHR084W"; -chrVIII Steinmetz_2013 transcript 276741 277895 . + . gene_id "ST05737"; transcript_id "YHR085W"; -chrVIII Steinmetz_2013 transcript 277928 279953 . + . gene_id "ST05738"; transcript_id "YHR086W"; -chrVIII Steinmetz_2013 transcript 280745 281339 . + . gene_id "ST05739"; transcript_id "YHR087W"; -chrVIII Steinmetz_2013 transcript 281452 282431 . + . gene_id "ST05740"; transcript_id "YHR088W"; -chrVIII Steinmetz_2013 transcript 286333 287029 . + . gene_id "ST05741"; transcript_id "SUT162"; -chrVIII Steinmetz_2013 transcript 291165 292789 . + . gene_id "ST05742"; transcript_id "SUT163"; -chrVIII Steinmetz_2013 transcript 314239 314791 . + . gene_id "ST05743"; transcript_id "SUT165"; -chrVIII Steinmetz_2013 transcript 314862 315701 . + . gene_id "ST05744"; transcript_id "XUT_8F-135"; -chrVIII Steinmetz_2013 transcript 316388 319929 . + . gene_id "ST05745"; transcript_id "YHR102W"; -chrVIII Steinmetz_2013 transcript 320239 323142 . + . gene_id "ST05746"; transcript_id "YHR103W"; -chrVIII Steinmetz_2013 transcript 323310 324579 . + . gene_id "ST05747"; transcript_id "YHR104W"; -chrVIII Steinmetz_2013 transcript 324680 325426 . + . gene_id "ST05748"; transcript_id "YHR105W"; -chrVIII Steinmetz_2013 transcript 325597 326747 . + . gene_id "ST05749"; transcript_id "YHR106W"; -chrVIII Steinmetz_2013 transcript 328265 330197 . + . gene_id "ST05750"; transcript_id "YHR108W"; -chrVIII Steinmetz_2013 transcript 330295 332143 . + . gene_id "ST05751"; transcript_id "YHR109W"; -chrVIII Steinmetz_2013 transcript 332253 333033 . + . gene_id "ST05752"; transcript_id "YHR110W"; -chrVIII Steinmetz_2013 transcript 333068 334444 . + . gene_id "ST05753"; transcript_id "YHR111W"; -chrVIII Steinmetz_2013 transcript 334255 336119 . + . gene_id "ST05754"; transcript_id "SUT166"; -chrVIII Steinmetz_2013 transcript 336328 337961 . + . gene_id "ST05755"; transcript_id "YHR113W"; -chrVIII Steinmetz_2013 transcript 340907 342287 . + . gene_id "ST05756"; transcript_id "YHR116W"; -chrVIII Steinmetz_2013 transcript 342317 344342 . + . gene_id "ST05757"; transcript_id "YHR117W"; -chrVIII Steinmetz_2013 transcript 345808 349426 . + . gene_id "ST05758"; transcript_id "YHR119W"; -chrVIII Steinmetz_2013 transcript 349535 352535 . + . gene_id "ST05759"; transcript_id "YHR120W"; -chrVIII Steinmetz_2013 transcript 352676 353417 . + . gene_id "ST05760"; transcript_id "YHR121W"; -chrVIII Steinmetz_2013 transcript 353616 354465 . + . gene_id "ST05761"; transcript_id "YHR122W"; -chrVIII Steinmetz_2013 transcript 354800 356217 . + . gene_id "ST05762"; transcript_id "YHR123W"; -chrVIII Steinmetz_2013 transcript 360868 361865 . + . gene_id "ST05763"; transcript_id "YHR127W"; -chrVIII Steinmetz_2013 transcript 362072 362965 . + . gene_id "ST05764"; transcript_id "YHR128W"; -chrVIII Steinmetz_2013 transcript 364365 365091 . + . gene_id "ST05765"; transcript_id "SUT167"; -chrVIII Steinmetz_2013 transcript 368109 368571 . + . gene_id "ST05766"; transcript_id "XUT_8F-159"; -chrVIII Steinmetz_2013 transcript 370009 370593 . + . gene_id "ST05767"; transcript_id "YHR132W-A"; -chrVIII Steinmetz_2013 transcript 371748 372673 . + . gene_id "ST05768"; transcript_id "YHR134W"; -chrVIII Steinmetz_2013 transcript 372658 373440 . + . gene_id "ST05769"; transcript_id "SUT168"; -chrVIII Steinmetz_2013 transcript 375679 377364 . + . gene_id "ST05770"; transcript_id "YHR137W"; -chrVIII Steinmetz_2013 transcript 377968 380506 . + . gene_id "ST05771"; transcript_id "SUT169"; -chrVIII Steinmetz_2013 transcript 380564 381379 . + . gene_id "ST05772"; transcript_id "YHR140W"; -chrVIII Steinmetz_2013 transcript 383405 384565 . + . gene_id "ST05773"; transcript_id "YHR142W"; -chrVIII Steinmetz_2013 transcript 385242 386730 . + . gene_id "ST05774"; transcript_id "YHR143W"; -chrVIII Steinmetz_2013 transcript 387203 387711 . + . gene_id "ST05775"; transcript_id "YHR143W-A"; -chrVIII Steinmetz_2013 transcript 390266 391743 . + . gene_id "ST05776"; transcript_id "YHR146W"; -chrVIII Steinmetz_2013 transcript 393511 394428 . + . gene_id "ST05777"; transcript_id "YHR148W"; -chrVIII Steinmetz_2013 transcript 397209 399194 . + . gene_id "ST05778"; transcript_id "YHR150W"; -chrVIII Steinmetz_2013 transcript 401403 402071 . + . gene_id "ST05779"; transcript_id "YHR152W"; -chrVIII Steinmetz_2013 transcript 402919 406260 . + . gene_id "ST05780"; transcript_id "YHR154W"; -chrVIII Steinmetz_2013 transcript 411691 412361 . + . gene_id "ST05781"; transcript_id "CUT181"; -chrVIII Steinmetz_2013 transcript 412885 413621 . + . gene_id "ST05782"; transcript_id "YHR157W"; -chrVIII Steinmetz_2013 transcript 417474 420126 . + . gene_id "ST05783"; transcript_id "YHR159W"; -chrVIII Steinmetz_2013 transcript 422895 423577 . + . gene_id "ST05784"; transcript_id "YHR162W"; -chrVIII Steinmetz_2013 transcript 423693 424611 . + . gene_id "ST05785"; transcript_id "YHR163W"; -chrVIII Steinmetz_2013 transcript 429440 429687 . + . gene_id "ST05786"; transcript_id "SUT171"; -chrVIII Steinmetz_2013 transcript 439296 440248 . + . gene_id "ST05787"; transcript_id "YHR167W"; -chrVIII Steinmetz_2013 transcript 440343 442136 . + . gene_id "ST05788"; transcript_id "YHR168W"; -chrVIII Steinmetz_2013 transcript 442132 443562 . + . gene_id "ST05789"; transcript_id "YHR169W"; -chrVIII Steinmetz_2013 transcript 443786 445483 . + . gene_id "ST05790"; transcript_id "YHR170W"; -chrVIII Steinmetz_2013 transcript 445704 447721 . + . gene_id "ST05791"; transcript_id "YHR171W"; -chrVIII Steinmetz_2013 transcript 448253 451233 . + . gene_id "ST05792"; transcript_id "YHR172W"; -chrVIII Steinmetz_2013 transcript 451297 452773 . + . gene_id "ST05793"; transcript_id "YHR174W"; -chrVIII Steinmetz_2013 transcript 454108 455639 . + . gene_id "ST05794"; transcript_id "YHR176W"; -chrVIII Steinmetz_2013 transcript 459249 461712 . + . gene_id "ST05795"; transcript_id "YHR178W"; -chrVIII Steinmetz_2013 transcript 462461 463807 . + . gene_id "ST05796"; transcript_id "YHR179W"; -chrVIII Steinmetz_2013 transcript 466105 466844 . + . gene_id "ST05797"; transcript_id "XUT_8F-212"; -chrVIII Steinmetz_2013 transcript 467195 467993 . + . gene_id "ST05798"; transcript_id "YHR181W"; -chrVIII Steinmetz_2013 transcript 468161 470623 . + . gene_id "ST05799"; transcript_id "YHR182W"; -chrVIII Steinmetz_2013 transcript 470883 472564 . + . gene_id "ST05800"; transcript_id "YHR183W"; -chrVIII Steinmetz_2013 transcript 480955 482029 . + . gene_id "ST05801"; transcript_id "YHR187W"; -chrVIII Steinmetz_2013 transcript 484796 486283 . + . gene_id "ST05802"; transcript_id "YHR190W"; -chrVIII Steinmetz_2013 transcript 486791 487742 . + . gene_id "ST05803"; transcript_id "YHR192W"; -chrVIII Steinmetz_2013 transcript 488615 490485 . + . gene_id "ST05804"; transcript_id "YHR194W"; -chrVIII Steinmetz_2013 transcript 490573 491881 . + . gene_id "ST05805"; transcript_id "YHR195W"; -chrVIII Steinmetz_2013 transcript 491877 493709 . + . gene_id "ST05806"; transcript_id "YHR196W"; -chrVIII Steinmetz_2013 transcript 493879 496292 . + . gene_id "ST05807"; transcript_id "YHR197W"; -chrVIII Steinmetz_2013 transcript 499064 499955 . + . gene_id "ST05808"; transcript_id "YHR200W"; -chrVIII Steinmetz_2013 transcript 502356 504258 . + . gene_id "ST05809"; transcript_id "YHR202W"; -chrVIII Steinmetz_2013 transcript 506272 508800 . + . gene_id "ST05810"; transcript_id "YHR204W"; -chrVIII Steinmetz_2013 transcript 508956 512048 . + . gene_id "ST05811"; transcript_id "YHR205W"; -chrVIII Steinmetz_2013 transcript 512246 514652 . + . gene_id "ST05812"; transcript_id "YHR206W"; -chrVIII Steinmetz_2013 transcript 516657 517215 . + . gene_id "ST05813"; transcript_id "SUT173"; -chrVIII Steinmetz_2013 transcript 516711 517232 . + . gene_id "ST05814"; transcript_id "XUT_8F-237"; -chrVIII Steinmetz_2013 transcript 517511 518865 . + . gene_id "ST05815"; transcript_id "YHR208W"; -chrVIII Steinmetz_2013 transcript 519404 520401 . + . gene_id "ST05816"; transcript_id "YHR209W"; -chrVIII Steinmetz_2013 transcript 522172 522675 . + . gene_id "ST05817"; transcript_id "XUT_8F-239"; -chrVIII Steinmetz_2013 transcript 522172 522650 . + . gene_id "ST05818"; transcript_id "SUT174"; -chrVIII Steinmetz_2013 transcript 554290 556157 . + . gene_id "ST05819"; transcript_id "YHR216W"; -chrIX Steinmetz_2013 transcript 22843 26143 . - . gene_id "ST05820"; transcript_id "YIL169C"; -chrIX Steinmetz_2013 transcript 28474 28746 . - . gene_id "ST05821"; transcript_id "SUT601"; -chrIX Steinmetz_2013 transcript 30844 32982 . - . gene_id "ST05822"; transcript_id "YIL166C"; -chrIX Steinmetz_2013 transcript 35154 35967 . - . gene_id "ST05823"; transcript_id "SUT602"; -chrIX Steinmetz_2013 transcript 36042 37227 . - . gene_id "ST05824"; transcript_id "XUT_9R-14-m2"; -chrIX Steinmetz_2013 transcript 40086 41464 . - . gene_id "ST05825"; transcript_id "YIL160C"; -chrIX Steinmetz_2013 transcript 46741 47546 . - . gene_id "ST05826"; transcript_id "YIL157C"; -chrIX Steinmetz_2013 transcript 51419 53752 . - . gene_id "ST05827"; transcript_id "YIL155C"; -chrIX Steinmetz_2013 transcript 53910 55046 . - . gene_id "ST05828"; transcript_id "YIL154C"; -chrIX Steinmetz_2013 transcript 56430 57102 . - . gene_id "ST05829"; transcript_id "XUT_9R-22"; -chrIX Steinmetz_2013 transcript 60960 62759 . - . gene_id "ST05830"; transcript_id "YIL150C"; -chrIX Steinmetz_2013 transcript 69504 73669 . - . gene_id "ST05831"; transcript_id "YIL147C"; -chrIX Steinmetz_2013 transcript 73969 76129 . - . gene_id "ST05832"; transcript_id "YIL146C"; -chrIX Steinmetz_2013 transcript 76028 77292 . - . gene_id "ST05833"; transcript_id "YIL145C"; -chrIX Steinmetz_2013 transcript 87857 88737 . - . gene_id "ST05834"; transcript_id "YIL139C"; -chrIX Steinmetz_2013 transcript 88879 89725 . - . gene_id "ST05835"; transcript_id "YIL138C"; -chrIX Steinmetz_2013 transcript 89866 92816 . - . gene_id "ST05836"; transcript_id "YIL137C"; -chrIX Steinmetz_2013 transcript 92944 93439 . - . gene_id "ST05837"; transcript_id "XUT_9R-35"; -chrIX Steinmetz_2013 transcript 94910 96433 . - . gene_id "ST05838"; transcript_id "YIL135C"; -chrIX Steinmetz_2013 transcript 98440 99434 . - . gene_id "ST05839"; transcript_id "YIL133C"; -chrIX Steinmetz_2013 transcript 99463 100512 . - . gene_id "ST05840"; transcript_id "YIL132C"; -chrIX Steinmetz_2013 transcript 100631 102292 . - . gene_id "ST05841"; transcript_id "YIL131C"; -chrIX Steinmetz_2013 transcript 116937 117668 . - . gene_id "ST05842"; transcript_id "YIL127C"; -chrIX Steinmetz_2013 transcript 125876 126938 . - . gene_id "ST05843"; transcript_id "XUT_9R-51"; -chrIX Steinmetz_2013 transcript 132989 135232 . - . gene_id "ST05844"; transcript_id "SUT606"; -chrIX Steinmetz_2013 transcript 136347 138068 . - . gene_id "ST05845"; transcript_id "YIL119C"; -chrIX Steinmetz_2013 transcript 140495 141635 . - . gene_id "ST05846"; transcript_id "YIL117C"; -chrIX Steinmetz_2013 transcript 144270 148793 . - . gene_id "ST05847"; transcript_id "YIL115C"; -chrIX Steinmetz_2013 transcript 149094 150019 . - . gene_id "ST05848"; transcript_id "YIL114C"; -chrIX Steinmetz_2013 transcript 154271 154882 . - . gene_id "ST05849"; transcript_id "SUT608"; -chrIX Steinmetz_2013 transcript 154237 155861 . - . gene_id "ST05850"; transcript_id "XUT_9R-63"; -chrIX Steinmetz_2013 transcript 155089 155861 . - . gene_id "ST05851"; transcript_id "SUT609"; -chrIX Steinmetz_2013 transcript 157270 160252 . - . gene_id "ST05852"; transcript_id "YIL109C"; -chrIX Steinmetz_2013 transcript 163269 165929 . - . gene_id "ST05853"; transcript_id "YIL107C"; -chrIX Steinmetz_2013 transcript 167543 169782 . - . gene_id "ST05854"; transcript_id "YIL105C"; -chrIX Steinmetz_2013 transcript 169884 171539 . - . gene_id "ST05855"; transcript_id "YIL104C"; -chrIX Steinmetz_2013 transcript 173043 173647 . - . gene_id "ST05856"; transcript_id "YIL102C-A"; -chrIX Steinmetz_2013 transcript 175204 177287 . - . gene_id "ST05857"; transcript_id "YIL101C"; -chrIX Steinmetz_2013 transcript 179678 180260 . - . gene_id "ST05858"; transcript_id "YIL098C"; -chrIX Steinmetz_2013 transcript 182020 183128 . - . gene_id "ST05859"; transcript_id "YIL096C"; -chrIX Steinmetz_2013 transcript 186436 187655 . - . gene_id "ST05860"; transcript_id "YIL094C"; -chrIX Steinmetz_2013 transcript 187853 188867 . - . gene_id "ST05861"; transcript_id "YIL093C"; -chrIX Steinmetz_2013 transcript 190976 193226 . - . gene_id "ST05862"; transcript_id "YIL091C"; -chrIX Steinmetz_2013 transcript 197859 199426 . - . gene_id "ST05863"; transcript_id "YIL088C"; -chrIX Steinmetz_2013 transcript 199554 200131 . - . gene_id "ST05864"; transcript_id "YIL087C"; -chrIX Steinmetz_2013 transcript 202158 203301 . - . gene_id "ST05865"; transcript_id "YIL084C"; -chrIX Steinmetz_2013 transcript 203460 204758 . - . gene_id "ST05866"; transcript_id "YIL083C"; -chrIX Steinmetz_2013 transcript 210799 212035 . - . gene_id "ST05867"; transcript_id "YIL079C"; -chrIX Steinmetz_2013 transcript 214858 215970 . - . gene_id "ST05868"; transcript_id "YIL077C"; -chrIX Steinmetz_2013 transcript 217759 220762 . - . gene_id "ST05869"; transcript_id "YIL075C"; -chrIX Steinmetz_2013 transcript 221028 222524 . - . gene_id "ST05870"; transcript_id "YIL074C"; -chrIX Steinmetz_2013 transcript 226041 226301 . - . gene_id "ST05871"; transcript_id "CUT663"; -chrIX Steinmetz_2013 transcript 226508 228117 . - . gene_id "ST05872"; transcript_id "SUT611"; -chrIX Steinmetz_2013 transcript 228404 230024 . - . gene_id "ST05873"; transcript_id "YIL071C"; -chrIX Steinmetz_2013 transcript 230166 231106 . - . gene_id "ST05874"; transcript_id "YIL070C"; -chrIX Steinmetz_2013 transcript 231366 232414 . - . gene_id "ST05875"; transcript_id "YIL069C"; -chrIX Steinmetz_2013 transcript 232945 235495 . - . gene_id "ST05876"; transcript_id "YIL068C"; -chrIX Steinmetz_2013 transcript 235641 237819 . - . gene_id "ST05877"; transcript_id "YIL067C"; -chrIX Steinmetz_2013 transcript 241238 241814 . - . gene_id "ST05878"; transcript_id "YIL065C"; -chrIX Steinmetz_2013 transcript 242720 243789 . - . gene_id "ST05879"; transcript_id "YIL063C"; -chrIX Steinmetz_2013 transcript 243851 244489 . - . gene_id "ST05880"; transcript_id "YIL062C"; -chrIX Steinmetz_2013 transcript 244615 245578 . - . gene_id "ST05881"; transcript_id "YIL061C"; -chrIX Steinmetz_2013 transcript 245984 247463 . - . gene_id "ST05882"; transcript_id "YIL059C"; -chrIX Steinmetz_2013 transcript 247768 248437 . - . gene_id "ST05883"; transcript_id "YIL057C"; -chrIX Steinmetz_2013 transcript 256178 257094 . - . gene_id "ST05884"; transcript_id "YIL052C"; -chrIX Steinmetz_2013 transcript 257727 258309 . - . gene_id "ST05885"; transcript_id "YIL051C"; -chrIX Steinmetz_2013 transcript 272779 273872 . - . gene_id "ST05886"; transcript_id "YIL044C"; -chrIX Steinmetz_2013 transcript 273967 274946 . - . gene_id "ST05887"; transcript_id "YIL043C"; -chrIX Steinmetz_2013 transcript 274998 276311 . - . gene_id "ST05888"; transcript_id "YIL042C"; -chrIX Steinmetz_2013 transcript 279966 282890 . - . gene_id "ST05889"; transcript_id "YIL038C"; -chrIX Steinmetz_2013 transcript 287439 289008 . - . gene_id "ST05890"; transcript_id "YIL035C"; -chrIX Steinmetz_2013 transcript 289137 290102 . - . gene_id "ST05891"; transcript_id "YIL034C"; -chrIX Steinmetz_2013 transcript 290240 291777 . - . gene_id "ST05892"; transcript_id "YIL033C"; -chrIX Steinmetz_2013 transcript 295971 300066 . - . gene_id "ST05893"; transcript_id "YIL030C"; -chrIX Steinmetz_2013 transcript 300452 301362 . - . gene_id "ST05894"; transcript_id "YIL029C"; -chrIX Steinmetz_2013 transcript 303588 304162 . - . gene_id "ST05895"; transcript_id "YIL027C"; -chrIX Steinmetz_2013 transcript 304334 307984 . - . gene_id "ST05896"; transcript_id "YIL026C"; -chrIX Steinmetz_2013 transcript 309259 310441 . - . gene_id "ST05897"; transcript_id "YIL023C"; -chrIX Steinmetz_2013 transcript 318083 321035 . - . gene_id "ST05898"; transcript_id "YIL017C"; -chrIX Steinmetz_2013 transcript 321885 323778 . - . gene_id "ST05899"; transcript_id "SUT612"; -chrIX Steinmetz_2013 transcript 325001 325605 . - . gene_id "ST05900"; transcript_id "YIL014C-A"; -chrIX Steinmetz_2013 transcript 335625 336224 . - . gene_id "ST05901"; transcript_id "YIL009C-A"; -chrIX Steinmetz_2013 transcript 342047 342340 . - . gene_id "ST05902"; transcript_id "CUT666"; -chrIX Steinmetz_2013 transcript 342834 343700 . - . gene_id "ST05903"; transcript_id "YIL007C"; -chrIX Steinmetz_2013 transcript 347773 348516 . - . gene_id "ST05904"; transcript_id "YIL004C"; -chrIX Steinmetz_2013 transcript 350509 353583 . - . gene_id "ST05905"; transcript_id "YIL002C"; -chrIX Steinmetz_2013 transcript 355814 356947 . - . gene_id "ST05906"; transcript_id "YIR001C"; -chrIX Steinmetz_2013 transcript 357298 360487 . - . gene_id "ST05907"; transcript_id "YIR002C"; -chrIX Steinmetz_2013 transcript 372992 374365 . - . gene_id "ST05908"; transcript_id "YIR008C"; -chrIX Steinmetz_2013 transcript 377177 378262 . - . gene_id "ST05909"; transcript_id "YIR011C"; -chrIX Steinmetz_2013 transcript 383347 384129 . - . gene_id "ST05910"; transcript_id "YIR017C"; -chrIX Steinmetz_2013 transcript 385345 386485 . - . gene_id "ST05911"; transcript_id "YIR018C-A"; -chrIX Steinmetz_2013 transcript 393679 395627 . - . gene_id "ST05912"; transcript_id "YIR020C"; -chrIX Steinmetz_2013 transcript 402772 403532 . - . gene_id "ST05913"; transcript_id "YIR024C"; -chrIX Steinmetz_2013 transcript 404777 406021 . - . gene_id "ST05914"; transcript_id "YIR026C"; -chrIX Steinmetz_2013 transcript 408368 410134 . - . gene_id "ST05915"; transcript_id "SUT614"; -chrIX Steinmetz_2013 transcript 411982 412810 . - . gene_id "ST05916"; transcript_id "YIR030C"; -chrIX Steinmetz_2013 transcript 412950 414800 . - . gene_id "ST05917"; transcript_id "YIR031C"; -chrIX Steinmetz_2013 transcript 414959 415679 . - . gene_id "ST05918"; transcript_id "YIR032C"; -chrIX Steinmetz_2013 transcript 419545 420771 . - . gene_id "ST05919"; transcript_id "YIR034C"; -chrIX Steinmetz_2013 transcript 420956 421810 . - . gene_id "ST05920"; transcript_id "YIR035C"; -chrIX Steinmetz_2013 transcript 422006 422891 . - . gene_id "ST05921"; transcript_id "YIR036C"; -chrIX Steinmetz_2013 transcript 423687 424537 . - . gene_id "ST05922"; transcript_id "YIR038C"; -chrIX Steinmetz_2013 transcript 427553 429279 . - . gene_id "ST05923"; transcript_id "SUT616"; -chrIX Steinmetz_2013 transcript 430347 432114 . - . gene_id "ST05924"; transcript_id "YIR039C"; -chrIX Steinmetz_2013 transcript 434836 435983 . - . gene_id "ST05925"; transcript_id "YIR042C"; -chrIX Steinmetz_2013 transcript 22582 22912 . + . gene_id "ST05926"; transcript_id "XUT_9F-2"; -chrIX Steinmetz_2013 transcript 31001 32590 . + . gene_id "ST05927"; transcript_id "SUT175"; -chrIX Steinmetz_2013 transcript 35166 37293 . + . gene_id "ST05928"; transcript_id "SUT176"; -chrIX Steinmetz_2013 transcript 37346 39203 . + . gene_id "ST05929"; transcript_id "YIL162W"; -chrIX Steinmetz_2013 transcript 39423 40173 . + . gene_id "ST05930"; transcript_id "YIL161W"; -chrIX Steinmetz_2013 transcript 40218 41507 . + . gene_id "ST05931"; transcript_id "SUT177"; -chrIX Steinmetz_2013 transcript 41801 46011 . + . gene_id "ST05932"; transcript_id "YIL159W"; -chrIX Steinmetz_2013 transcript 46190 46900 . + . gene_id "ST05933"; transcript_id "YIL158W"; -chrIX Steinmetz_2013 transcript 55177 56424 . + . gene_id "ST05934"; transcript_id "YIL153W"; -chrIX Steinmetz_2013 transcript 56532 57277 . + . gene_id "ST05935"; transcript_id "YIL152W"; -chrIX Steinmetz_2013 transcript 68693 69593 . + . gene_id "ST05936"; transcript_id "YIL148W"; -chrIX Steinmetz_2013 transcript 74076 74750 . + . gene_id "ST05937"; transcript_id "XUT_9F-29"; -chrIX Steinmetz_2013 transcript 76304 77335 . + . gene_id "ST05938"; transcript_id "XUT_9F-32"; -chrIX Steinmetz_2013 transcript 77972 80200 . + . gene_id "ST05939"; transcript_id "YIL144W"; -chrIX Steinmetz_2013 transcript 83275 84921 . + . gene_id "ST05940"; transcript_id "YIL142W"; -chrIX Steinmetz_2013 transcript 93591 94899 . + . gene_id "ST05941"; transcript_id "YIL136W"; -chrIX Steinmetz_2013 transcript 97371 98397 . + . gene_id "ST05942"; transcript_id "YIL134W"; -chrIX Steinmetz_2013 transcript 113730 117035 . + . gene_id "ST05943"; transcript_id "YIL128W"; -chrIX Steinmetz_2013 transcript 117910 122205 . + . gene_id "ST05944"; transcript_id "YIL126W"; -chrIX Steinmetz_2013 transcript 122404 125996 . + . gene_id "ST05945"; transcript_id "YIL125W"; -chrIX Steinmetz_2013 transcript 126173 127197 . + . gene_id "ST05946"; transcript_id "YIL124W"; -chrIX Steinmetz_2013 transcript 127440 129918 . + . gene_id "ST05947"; transcript_id "YIL123W"; -chrIX Steinmetz_2013 transcript 130323 131821 . + . gene_id "ST05948"; transcript_id "YIL122W"; -chrIX Steinmetz_2013 transcript 132240 134042 . + . gene_id "ST05949"; transcript_id "YIL121W"; -chrIX Steinmetz_2013 transcript 136501 137159 . + . gene_id "ST05950"; transcript_id "SUT179"; -chrIX Steinmetz_2013 transcript 139638 140602 . + . gene_id "ST05951"; transcript_id "YIL118W"; -chrIX Steinmetz_2013 transcript 142894 144112 . + . gene_id "ST05952"; transcript_id "YIL116W"; -chrIX Steinmetz_2013 transcript 150522 151294 . + . gene_id "ST05953"; transcript_id "YIL113W"; -chrIX Steinmetz_2013 transcript 151551 154976 . + . gene_id "ST05954"; transcript_id "YIL112W"; -chrIX Steinmetz_2013 transcript 155199 155799 . + . gene_id "ST05955"; transcript_id "YIL111W"; -chrIX Steinmetz_2013 transcript 156014 157342 . + . gene_id "ST05956"; transcript_id "YIL110W"; -chrIX Steinmetz_2013 transcript 160863 163060 . + . gene_id "ST05957"; transcript_id "YIL108W"; -chrIX Steinmetz_2013 transcript 165203 166029 . + . gene_id "ST05958"; transcript_id "XUT_9F-71"; -chrIX Steinmetz_2013 transcript 166377 167547 . + . gene_id "ST05959"; transcript_id "YIL106W"; -chrIX Steinmetz_2013 transcript 171701 173101 . + . gene_id "ST05960"; transcript_id "YIL103W"; -chrIX Steinmetz_2013 transcript 173867 174849 . + . gene_id "ST05961"; transcript_id "SUT181"; -chrIX Steinmetz_2013 transcript 180418 182147 . + . gene_id "ST05962"; transcript_id "YIL097W"; -chrIX Steinmetz_2013 transcript 183768 186439 . + . gene_id "ST05963"; transcript_id "YIL095W"; -chrIX Steinmetz_2013 transcript 188988 191064 . + . gene_id "ST05964"; transcript_id "YIL092W"; -chrIX Steinmetz_2013 transcript 193457 195397 . + . gene_id "ST05965"; transcript_id "YIL090W"; -chrIX Steinmetz_2013 transcript 195513 196271 . + . gene_id "ST05966"; transcript_id "YIL089W"; -chrIX Steinmetz_2013 transcript 196412 196687 . + . gene_id "ST05967"; transcript_id "XUT_9F-90"; -chrIX Steinmetz_2013 transcript 202234 202924 . + . gene_id "ST05968"; transcript_id "SUT182"; -chrIX Steinmetz_2013 transcript 212451 214776 . + . gene_id "ST05969"; transcript_id "YIL078W"; -chrIX Steinmetz_2013 transcript 216646 217653 . + . gene_id "ST05970"; transcript_id "YIL076W"; -chrIX Steinmetz_2013 transcript 222871 224479 . + . gene_id "ST05971"; transcript_id "SUT183"; -chrIX Steinmetz_2013 transcript 229797 230246 . + . gene_id "ST05972"; transcript_id "XUT_9F-117"; -chrIX Steinmetz_2013 transcript 243658 244087 . + . gene_id "ST05973"; transcript_id "XUT_9F-120"; -chrIX Steinmetz_2013 transcript 249991 251969 . + . gene_id "ST05974"; transcript_id "YIL056W"; -chrIX Steinmetz_2013 transcript 253413 255024 . + . gene_id "ST05975"; transcript_id "YIL054W"; -chrIX Steinmetz_2013 transcript 255087 256002 . + . gene_id "ST05976"; transcript_id "YIL053W"; -chrIX Steinmetz_2013 transcript 258799 259895 . + . gene_id "ST05977"; transcript_id "YIL050W"; -chrIX Steinmetz_2013 transcript 260152 260988 . + . gene_id "ST05978"; transcript_id "YIL049W"; -chrIX Steinmetz_2013 transcript 268116 268541 . + . gene_id "ST05979"; transcript_id "YIL046W-A"; -chrIX Steinmetz_2013 transcript 268575 270686 . + . gene_id "ST05980"; transcript_id "YIL046W"; -chrIX Steinmetz_2013 transcript 271052 272816 . + . gene_id "ST05981"; transcript_id "YIL045W"; -chrIX Steinmetz_2013 transcript 276503 277590 . + . gene_id "ST05982"; transcript_id "YIL041W"; -chrIX Steinmetz_2013 transcript 277714 278231 . + . gene_id "ST05983"; transcript_id "YIL040W"; -chrIX Steinmetz_2013 transcript 278397 279946 . + . gene_id "ST05984"; transcript_id "YIL039W"; -chrIX Steinmetz_2013 transcript 283078 284681 . + . gene_id "ST05985"; transcript_id "SUT186"; -chrIX Steinmetz_2013 transcript 285516 287598 . + . gene_id "ST05986"; transcript_id "YIL036W"; -chrIX Steinmetz_2013 transcript 289239 290193 . + . gene_id "ST05987"; transcript_id "SUT187"; -chrIX Steinmetz_2013 transcript 289368 290270 . + . gene_id "ST05988"; transcript_id "XUT_9F-138"; -chrIX Steinmetz_2013 transcript 290271 292273 . + . gene_id "ST05989"; transcript_id "SUT188"; -chrIX Steinmetz_2013 transcript 301566 303364 . + . gene_id "ST05990"; transcript_id "YIL028W"; -chrIX Steinmetz_2013 transcript 311056 312688 . + . gene_id "ST05991"; transcript_id "YIL022W"; -chrIX Steinmetz_2013 transcript 312843 313996 . + . gene_id "ST05992"; transcript_id "YIL021W"; -chrIX Steinmetz_2013 transcript 315073 316306 . + . gene_id "ST05993"; transcript_id "YIL019W"; -chrIX Steinmetz_2013 transcript 316744 318019 . + . gene_id "ST05994"; transcript_id "YIL018W"; -chrIX Steinmetz_2013 transcript 321429 321988 . + . gene_id "ST05995"; transcript_id "YIL016W"; -chrIX Steinmetz_2013 transcript 322144 324181 . + . gene_id "ST05996"; transcript_id "YIL015W"; -chrIX Steinmetz_2013 transcript 325929 328098 . + . gene_id "ST05997"; transcript_id "YIL014W"; -chrIX Steinmetz_2013 transcript 333695 334664 . + . gene_id "ST05998"; transcript_id "YIL011W"; -chrIX Steinmetz_2013 transcript 334843 335708 . + . gene_id "ST05999"; transcript_id "YIL010W"; -chrIX Steinmetz_2013 transcript 339336 341663 . + . gene_id "ST06000"; transcript_id "YIL009W"; -chrIX Steinmetz_2013 transcript 342490 342983 . + . gene_id "ST06001"; transcript_id "YIL008W"; -chrIX Steinmetz_2013 transcript 343856 345425 . + . gene_id "ST06002"; transcript_id "YIL006W"; -chrIX Steinmetz_2013 transcript 345559 347982 . + . gene_id "ST06003"; transcript_id "YIL005W"; -chrIX Steinmetz_2013 transcript 349076 350088 . + . gene_id "ST06004"; transcript_id "YIL003W"; -chrIX Steinmetz_2013 transcript 350273 350600 . + . gene_id "ST06005"; transcript_id "YIL002W-A"; -chrIX Steinmetz_2013 transcript 353881 355540 . + . gene_id "ST06006"; transcript_id "YIL001W"; -chrIX Steinmetz_2013 transcript 356644 357416 . + . gene_id "ST06007"; transcript_id "XUT_9F-176"; -chrIX Steinmetz_2013 transcript 357103 357416 . + . gene_id "ST06008"; transcript_id "SUT191"; -chrIX Steinmetz_2013 transcript 360872 362994 . + . gene_id "ST06009"; transcript_id "YIR003W"; -chrIX Steinmetz_2013 transcript 363210 364635 . + . gene_id "ST06010"; transcript_id "YIR004W"; -chrIX Steinmetz_2013 transcript 364844 365411 . + . gene_id "ST06011"; transcript_id "YIR005W"; -chrIX Steinmetz_2013 transcript 370697 373106 . + . gene_id "ST06012"; transcript_id "YIR007W"; -chrIX Steinmetz_2013 transcript 374447 375310 . + . gene_id "ST06013"; transcript_id "YIR009W"; -chrIX Steinmetz_2013 transcript 375363 377268 . + . gene_id "ST06014"; transcript_id "YIR010W"; -chrIX Steinmetz_2013 transcript 378461 379878 . + . gene_id "ST06015"; transcript_id "YIR012W"; -chrIX Steinmetz_2013 transcript 381062 381826 . + . gene_id "ST06016"; transcript_id "YIR014W"; -chrIX Steinmetz_2013 transcript 382598 383501 . + . gene_id "ST06017"; transcript_id "YIR016W"; -chrIX Steinmetz_2013 transcript 384588 385401 . + . gene_id "ST06018"; transcript_id "YIR018W"; -chrIX Steinmetz_2013 transcript 387023 388458 . + . gene_id "ST06019"; transcript_id "SUT193"; -chrIX Steinmetz_2013 transcript 397242 398445 . + . gene_id "ST06020"; transcript_id "YIR021W"; -chrIX Steinmetz_2013 transcript 398730 399341 . + . gene_id "ST06021"; transcript_id "YIR022W"; -chrIX Steinmetz_2013 transcript 399759 402752 . + . gene_id "ST06022"; transcript_id "YIR023W"; -chrIX Steinmetz_2013 transcript 403632 404892 . + . gene_id "ST06023"; transcript_id "YIR025W"; -chrIX Steinmetz_2013 transcript 406352 407857 . + . gene_id "ST06024"; transcript_id "SUT195"; -chrIX Steinmetz_2013 transcript 406664 408415 . + . gene_id "ST06025"; transcript_id "XUT_9F-202"; -chrIX Steinmetz_2013 transcript 410678 411887 . + . gene_id "ST06026"; transcript_id "YIR029W"; -chrIX Steinmetz_2013 transcript 416087 419529 . + . gene_id "ST06027"; transcript_id "YIR033W"; -chrIX Steinmetz_2013 transcript 421045 421917 . + . gene_id "ST06028"; transcript_id "SUT197"; -chrIX Steinmetz_2013 transcript 423067 423766 . + . gene_id "ST06029"; transcript_id "YIR037W"; -chrIX Steinmetz_2013 transcript 432511 434436 . + . gene_id "ST06030"; transcript_id "YIR041W"; diff --git a/results/2022-1201/links_TBD.md b/results/2022-1201/links_TBD.md deleted file mode 100644 index c9b6acc..0000000 --- a/results/2022-1201/links_TBD.md +++ /dev/null @@ -1,43 +0,0 @@ -Links -- [STAR `--twopassMode None` vs `--twopassMode Basic`](https://www.biostars.org/p/301944/) - - -Links -- [Google search results for "W303 reference genome"](https://www.google.com/search?q=W303+reference+genome&rlz=1C5CHFA_enUS949US949&ei=AJSLY43DNMDg0PEPjIKBgAY&ved=0ahUKEwiNw-jYiN77AhVAMDQIHQxBAGAQ4dUDCBA&uact=5&oq=W303+reference+genome&gs_lcp=Cgxnd3Mtd2l6LXNlcnAQAzIFCAAQogQyBQgAEKIEMgUIABCiBDIFCAAQogQyBQgAEKIEOgoIABBHENYEELADOgUIIRCgAToFCCEQqwJKBAhBGABKBAhGGABQ8ARYygtg4wxoAXABeACAAXOIAf8DkgEDNi4xmAEAoAEByAEIwAEB&sclient=gws-wiz-serp) - + [ResearchGate: Whole-Genome Sequence and Variant Analysis of W303, a Widely-Used Strain of Saccharomyces cerevisiae](https://www.researchgate.net/publication/317367308_Whole-Genome_Sequence_and_Variant_Analysis_of_W303_a_Widely-Used_Strain_of_Saccharomyces_cerevisiae) - + [PubMed for the above](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5499129/) - * [NCBI Biosample for W303 (GCA_002163515.1)](https://www.ncbi.nlm.nih.gov/biosample/SAMN05199423) - * [NCBI GenBank entry for W303 (GCA_002163515.1)](https://www.ncbi.nlm.nih.gov/assembly/GCA_002163515.1) - * [NCBI BioProject for W303 (GCA_002163515.1)](https://www.ncbi.nlm.nih.gov/bioproject/PRJNA324291) - * [NCBI Taxonomy Browser for W303](https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=580240) - * [NCBI page for W303 assemblies (currently, there are three in the database)](https://www.ncbi.nlm.nih.gov/assembly/?term=txid580240[Organism:noexp]) - + [On how we could identify and filter out *Ty* elements](https://www.nature.com/articles/s41598-017-00414-2#Sec13) - ```txt -(fr/the M&M associated w/the above link) - -Identification of Ty elements - -Retrotransposons sequences downloaded from SGD database were subjected to BLASTn against the Sb genomes. The BLAST results obtained were further filtered with query coverage of 90% and best hits were retrieved. Further, the matched regions were screened manually. -``` - - - * [The *Sci Rep* paper for the above link, which itself could be useful for looking into W303](https://www.nature.com/articles/s41598-017-00414-2) - -- [Google search results for "GCA_002163515.1"] - + There don't seem to be annotations for the assembly; at least, none that I could find - + Also, one paper (hosted by HAL or something and by a French group) suggested there's a chromosomal inversion on chrXVI for GCA_002163515.1 - - -- [*F1000Research*: "Ten steps to get started in Genome Assembly and Annotation"](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850084/) - + Makes use of *S. cerevisiae* W303 (`#QUESTION` which assembly?) in its benchmarking... - + That reference leads to a rabbit hole that results in [this zenodo entry](https://zenodo.org/record/345098) -- [NCBI GenBank: 2012 WGS for W303 genome assembly](https://www.ncbi.nlm.nih.gov/bioproject/PRJNA167645) - + Used by/in the above -- [Google search results for '"w303" reference genome "gff"'](https://www.google.com/search?q=%22w303%22+reference+genome+%22gff%22&rlz=1C5CHFA_enUS949US949&biw=1440&bih=796&ei=2paLY66NBvXg0PEP7oGEsAw&ved=0ahUKEwiu4sW0i977AhV1MDQIHe4AAcYQ4dUDCBA&uact=5&oq=%22w303%22+reference+genome+%22gff%22&gs_lcp=Cgxnd3Mtd2l6LXNlcnAQAzIICCEQwwQQoAEyCAghEMMEEKABMgUIIRCrAjIFCCEQqwI6CggAEEcQ1gQQsANKBAhBGABKBAhGGABQ1ANY1ANgggloAXABeACAAWaIAWaSAQMwLjGYAQCgAQHIAQjAAQE&sclient=gws-wiz-serp) - + [*bioRxiv* 2022: 142 telomere-to-telomere assemblies reveal the genome structural landscape in Saccharomyces cerevisiae](https://www.biorxiv.org/content/10.1101/2022.10.04.510633v1.full.pdf) - + [PLOS One: "Evolutionary Genomics of Transposable Elements in Saccharomyces cerevisiae"](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0050978) - * File S3: "GFF file of Repeatmasker/REannotate Ty fragments in the June 2008 version of S. cerevisiae genome from the UCSC Genome Database (sacCer2). Individual fragments from the same element are given the same name in the ID column. The span of the union of fragments is the same as the range of coordinates given in File S2." - -- `#IMPORTANT` [SGD sequence files for W303](http://sgd-archive.yeastgenome.org/?prefix=sequence/strains/W303/) - + The 2017/2018 assembly is not included - + But the 2012 and 2015 assemblies are and include annotations in the forms of `gff` files \ No newline at end of file diff --git a/results/2022-1201/notebook/AG-KA.2023-0106-0113.Trinity_numbers.xlsx b/results/2022-1201/notebook/AG-KA.2023-0106-0113.Trinity_numbers.xlsx deleted file mode 100644 index 4919683..0000000 Binary files a/results/2022-1201/notebook/AG-KA.2023-0106-0113.Trinity_numbers.xlsx and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.docx b/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.docx deleted file mode 100644 index 73d55f2..0000000 Binary files a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.docx and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-1.png b/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-1.png deleted file mode 100644 index b6d1435..0000000 Binary files a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-1.png and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-2.png b/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-2.png deleted file mode 100644 index 5656e6f..0000000 Binary files a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-2.png and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-3.png b/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-3.png deleted file mode 100644 index 79513ac..0000000 Binary files a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-3.png and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-4.png b/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-4.png deleted file mode 100644 index 4fe2604..0000000 Binary files a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-4.png and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-5.png b/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-5.png deleted file mode 100644 index 75535cb..0000000 Binary files a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.1.page-5.png and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.2.bedtools_comparison.pdf b/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.2.bedtools_comparison.pdf deleted file mode 100644 index 9703877..0000000 Binary files a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.2.bedtools_comparison.pdf and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.3.right_vs_wrong_analysis.docx b/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.3.right_vs_wrong_analysis.docx deleted file mode 100644 index 45b2ae0..0000000 Binary files a/results/2022-1201/notebook/AG.2022-1202.notes_on_trinity.3.right_vs_wrong_analysis.docx and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2022-1215.preprocessing_thoughts.pptx b/results/2022-1201/notebook/AG.2022-1215.preprocessing_thoughts.pptx deleted file mode 100644 index 560f82e..0000000 Binary files a/results/2022-1201/notebook/AG.2022-1215.preprocessing_thoughts.pptx and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2022-1216.awk_split_strand.sh b/results/2022-1201/notebook/AG.2022-1216.awk_split_strand.sh deleted file mode 100644 index 8a1f2ef..0000000 --- a/results/2022-1201/notebook/AG.2022-1216.awk_split_strand.sh +++ /dev/null @@ -1,24 +0,0 @@ -#!/bin/bash -WRAP="" -RUNDIR=`pwd`; - -# Please review the variables below and update if needed. -THREADS=8 - -module purge - -mkdir plus -mkdir minus - -for file in *.gff3; do - - awk '($7=="+")' ${file} > ${file%.gff3}_plus.gff3 - awk '($7=="-")' ${file} > ${file%.gff3}_minus.gff3 - - - done - - mv *plus.gff3 plus - mv *minus.gff3 minus - -done diff --git a/results/2022-1201/notebook/AG.2022-1216.trinity_behavior.pptx b/results/2022-1201/notebook/AG.2022-1216.trinity_behavior.pptx deleted file mode 100644 index 1dfb505..0000000 Binary files a/results/2022-1201/notebook/AG.2022-1216.trinity_behavior.pptx and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2022-1222.preprocessing_more_thoughts.pptx b/results/2022-1201/notebook/AG.2022-1222.preprocessing_more_thoughts.pptx deleted file mode 100644 index a18f685..0000000 Binary files a/results/2022-1201/notebook/AG.2022-1222.preprocessing_more_thoughts.pptx and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.3.right_vs_wrong_analysis.screen_shot_R1.png b/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.3.right_vs_wrong_analysis.screen_shot_R1.png deleted file mode 100755 index 7553532..0000000 Binary files a/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.3.right_vs_wrong_analysis.screen_shot_R1.png and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.3.right_vs_wrong_analysis.screen_shot_R2.png b/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.3.right_vs_wrong_analysis.screen_shot_R2.png deleted file mode 100755 index b046803..0000000 Binary files a/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.3.right_vs_wrong_analysis.screen_shot_R2.png and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.3.right_vs_wrong_analysis.screen_shot_R3.png b/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.3.right_vs_wrong_analysis.screen_shot_R3.png deleted file mode 100755 index 5000131..0000000 Binary files a/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.3.right_vs_wrong_analysis.screen_shot_R3.png and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.3.right_vs_wrong_analysis.screen_shot_R4.png b/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.3.right_vs_wrong_analysis.screen_shot_R4.png deleted file mode 100755 index 6b28e59..0000000 Binary files a/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.3.right_vs_wrong_analysis.screen_shot_R4.png and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.gffcompare.png b/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.gffcompare.png deleted file mode 100644 index 3dfd05b..0000000 Binary files a/results/2022-1201/notebook/AG.2023-0103.notes_on_trinity.gffcompare.png and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2023-0106.Trinity_numbers.txt b/results/2022-1201/notebook/AG.2023-0106.Trinity_numbers.txt deleted file mode 100644 index 57984cd..0000000 --- a/results/2022-1201/notebook/AG.2023-0106.Trinity_numbers.txt +++ /dev/null @@ -1,400 +0,0 @@ -"name" "rcor_and_trim" "PASA_Settings" "number_of_alignments" "Alignment_kind" "total_counts" "Total_mRNA" "No_fussion_mRNA" "percent_fused" -"1" "PASA_rcor-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-10.0" 1 "EndToEnd.compreh" 13081 5314 2950 0.555137372977042 -"2" "PASA_rcor-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "gene-overlap-10.0" 1 "Local.compreh" 13006 5313 2942 0.55373611895351 -"3" "PASA_rcor-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-10.0" 10 "EndToEnd.compreh" 13451 5397 2974 0.551046877895127 -"4" "PASA_rcor-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "gene-overlap-10.0" 10 "Local.compreh" 13400 5396 2969 0.550222386953299 -"5" "PASA_rcor-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-10.0" 100 "EndToEnd.compreh" 13429 5414 2980 0.550424824528999 -"6" "PASA_rcor-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "gene-overlap-10.0" 100 "Local.compreh" 13382 5402 2974 0.550536838208071 -"7" "PASA_rcor-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-10.0" 15 "EndToEnd.compreh" 13378 5411 2985 0.551654038070597 -"8" "PASA_rcor-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "gene-overlap-10.0" 15 "Local.compreh" 13323 5408 2979 0.550850591715976 -"9" "PASA_rcor-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-10.0" 5 "EndToEnd.compreh" 13507 5390 2974 0.551762523191095 -"10" "PASA_rcor-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "gene-overlap-10.0" 5 "Local.compreh" 13440 5382 2967 0.551282051282051 -"11" "PASA_rcor-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-10.0" 50 "EndToEnd.compreh" 13443 5410 2980 0.55083179297597 -"12" "PASA_rcor-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "gene-overlap-10.0" 50 "Local.compreh" 13378 5401 2974 0.550638770598037 -"13" "PASA_rcor-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-20.0" 1 "EndToEnd.compreh" 13249 5283 2956 0.559530569752035 -"14" "PASA_rcor-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "gene-overlap-20.0" 1 "Local.compreh" 13172 5282 2951 0.558689890193109 -"15" "PASA_rcor-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-20.0" 10 "EndToEnd.compreh" 13629 5366 2981 0.555534849049571 -"16" "PASA_rcor-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "gene-overlap-20.0" 10 "Local.compreh" 13578 5365 2977 0.554892823858341 -"17" "PASA_rcor-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-20.0" 100 "EndToEnd.compreh" 13608 5382 2988 0.555183946488294 -"18" "PASA_rcor-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "gene-overlap-20.0" 100 "Local.compreh" 13558 5371 2982 0.555203872649414 -"19" "PASA_rcor-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-20.0" 15 "EndToEnd.compreh" 13558 5379 2993 0.556423126975274 -"20" "PASA_rcor-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "gene-overlap-20.0" 15 "Local.compreh" 13500 5378 2987 0.555410933432503 -"21" "PASA_rcor-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-20.0" 5 "EndToEnd.compreh" 13682 5360 2981 0.55615671641791 -"22" "PASA_rcor-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "gene-overlap-20.0" 5 "Local.compreh" 13615 5352 2975 0.555866965620329 -"23" "PASA_rcor-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-20.0" 50 "EndToEnd.compreh" 13623 5378 2988 0.555596876162142 -"24" "PASA_rcor-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "gene-overlap-20.0" 50 "Local.compreh" 13555 5370 2982 0.555307262569832 -"25" "PASA_rcor-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-30.0" 1 "EndToEnd.compreh" 13440 5259 2964 0.563605248146035 -"26" "PASA_rcor-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "gene-overlap-30.0" 1 "Local.compreh" 13359 5258 2958 0.562571319893496 -"27" "PASA_rcor-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-30.0" 10 "EndToEnd.compreh" 13821 5343 2990 0.559610705596107 -"28" "PASA_rcor-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "gene-overlap-30.0" 10 "Local.compreh" 13770 5341 2986 0.559071334956001 -"29" "PASA_rcor-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-30.0" 100 "EndToEnd.compreh" 13796 5358 2997 0.559350503919373 -"30" "PASA_rcor-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "gene-overlap-30.0" 100 "Local.compreh" 13750 5347 2991 0.55937909107911 -"31" "PASA_rcor-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-30.0" 15 "EndToEnd.compreh" 13749 5356 3002 0.560492905153099 -"32" "PASA_rcor-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "gene-overlap-30.0" 15 "Local.compreh" 13692 5354 2996 0.559581621217781 -"33" "PASA_rcor-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-30.0" 5 "EndToEnd.compreh" 13873 5335 2990 0.560449859418932 -"34" "PASA_rcor-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "gene-overlap-30.0" 5 "Local.compreh" 13807 5326 2984 0.560270371761172 -"35" "PASA_rcor-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-30.0" 50 "EndToEnd.compreh" 13810 5353 2997 0.559872968428918 -"36" "PASA_rcor-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "gene-overlap-30.0" 50 "Local.compreh" 13746 5346 2991 0.559483726150393 -"37" "PASA_rcor-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-40.0" 1 "EndToEnd.compreh" 13659 5228 2963 0.566755929609793 -"38" "PASA_rcor-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "gene-overlap-40.0" 1 "Local.compreh" 13581 5223 2956 0.565958261535516 -"39" "PASA_rcor-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-40.0" 10 "EndToEnd.compreh" 14051 5308 2987 0.562735493594574 -"40" "PASA_rcor-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "gene-overlap-40.0" 10 "Local.compreh" 13993 5305 2982 0.562111215834119 -"41" "PASA_rcor-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-40.0" 100 "EndToEnd.compreh" 14026 5320 2994 0.562781954887218 -"42" "PASA_rcor-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "gene-overlap-40.0" 100 "Local.compreh" 13979 5307 2988 0.563029960429621 -"43" "PASA_rcor-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-40.0" 15 "EndToEnd.compreh" 13976 5322 2999 0.563509958662157 -"44" "PASA_rcor-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "gene-overlap-40.0" 15 "Local.compreh" 13914 5318 2992 0.562617525385483 -"45" "PASA_rcor-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-40.0" 5 "EndToEnd.compreh" 14099 5300 2987 0.563584905660377 -"46" "PASA_rcor-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "gene-overlap-40.0" 5 "Local.compreh" 14035 5288 2980 0.563540090771558 -"47" "PASA_rcor-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-40.0" 50 "EndToEnd.compreh" 14039 5315 2994 0.563311382878645 -"48" "PASA_rcor-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "gene-overlap-40.0" 50 "Local.compreh" 13974 5308 2988 0.562923888470234 -"49" "PASA_rcor-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-50.0" 1 "EndToEnd.compreh" 13922 5198 2962 0.569834551750673 -"50" "PASA_rcor-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "gene-overlap-50.0" 1 "Local.compreh" 13849 5191 2956 0.569447120015411 -"51" "PASA_rcor-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-50.0" 10 "EndToEnd.compreh" 14322 5277 2986 0.565851809740383 -"52" "PASA_rcor-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "gene-overlap-50.0" 10 "Local.compreh" 14274 5273 2980 0.565143182249194 -"53" "PASA_rcor-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-50.0" 100 "EndToEnd.compreh" 14301 5284 2992 0.566237698713096 -"54" "PASA_rcor-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "gene-overlap-50.0" 100 "Local.compreh" 14254 5272 2986 0.56638846737481 -"55" "PASA_rcor-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-50.0" 15 "EndToEnd.compreh" 14248 5289 2997 0.566647759500851 -"56" "PASA_rcor-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "gene-overlap-50.0" 15 "Local.compreh" 14191 5285 2990 0.565752128666036 -"57" "PASA_rcor-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-50.0" 5 "EndToEnd.compreh" 14373 5268 2985 0.566628701594533 -"58" "PASA_rcor-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "gene-overlap-50.0" 5 "Local.compreh" 14307 5258 2979 0.566565233929251 -"59" "PASA_rcor-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-50.0" 50 "EndToEnd.compreh" 14313 5280 2992 0.566666666666667 -"60" "PASA_rcor-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "gene-overlap-50.0" 50 "Local.compreh" 14249 5274 2986 0.566173682214638 -"61" "PASA_rcor-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-60.0" 1 "EndToEnd.compreh" 14272 5154 2937 0.569848661233993 -"62" "PASA_rcor-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "gene-overlap-60.0" 1 "Local.compreh" 14202 5151 2933 0.569403999223452 -"63" "PASA_rcor-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-60.0" 10 "EndToEnd.compreh" 14669 5233 2959 0.565450028664246 -"64" "PASA_rcor-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "gene-overlap-60.0" 10 "Local.compreh" 14624 5228 2954 0.565034429992349 -"65" "PASA_rcor-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-60.0" 100 "EndToEnd.compreh" 14649 5240 2965 0.565839694656489 -"66" "PASA_rcor-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "gene-overlap-60.0" 100 "Local.compreh" 14607 5229 2960 0.566073819085867 -"67" "PASA_rcor-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-60.0" 15 "EndToEnd.compreh" 14596 5244 2970 0.566361556064073 -"68" "PASA_rcor-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "gene-overlap-60.0" 15 "Local.compreh" 14544 5241 2964 0.56554092730395 -"69" "PASA_rcor-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-60.0" 5 "EndToEnd.compreh" 14720 5223 2958 0.56634118322803 -"70" "PASA_rcor-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "gene-overlap-60.0" 5 "Local.compreh" 14657 5215 2953 0.566251198465964 -"71" "PASA_rcor-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-60.0" 50 "EndToEnd.compreh" 14664 5235 2965 0.566380133715377 -"72" "PASA_rcor-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "gene-overlap-60.0" 50 "Local.compreh" 14602 5231 2960 0.565857388644619 -"73" "PASA_rcor-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-70.0" 1 "EndToEnd.compreh" 14748 5115 2906 0.568132942326491 -"74" "PASA_rcor-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "gene-overlap-70.0" 1 "Local.compreh" 14680 5114 2903 0.567657411028549 -"75" "PASA_rcor-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-70.0" 10 "EndToEnd.compreh" 15149 5191 2924 0.563282604507802 -"76" "PASA_rcor-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "gene-overlap-70.0" 10 "Local.compreh" 15112 5187 2921 0.563138615770195 -"77" "PASA_rcor-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-70.0" 100 "EndToEnd.compreh" 15128 5199 2930 0.563569917291787 -"78" "PASA_rcor-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "gene-overlap-70.0" 100 "Local.compreh" 15089 5187 2927 0.564295353769038 -"79" "PASA_rcor-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-70.0" 15 "EndToEnd.compreh" 15079 5202 2935 0.564206074586697 -"80" "PASA_rcor-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "gene-overlap-70.0" 15 "Local.compreh" 15031 5200 2931 0.563653846153846 -"81" "PASA_rcor-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-70.0" 5 "EndToEnd.compreh" 15203 5181 2923 0.56417679984559 -"82" "PASA_rcor-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "gene-overlap-70.0" 5 "Local.compreh" 15147 5172 2920 0.564578499613302 -"83" "PASA_rcor-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-70.0" 50 "EndToEnd.compreh" 15143 5194 2930 0.564112437427801 -"84" "PASA_rcor-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "gene-overlap-70.0" 50 "Local.compreh" 15086 5189 2927 0.564077857005203 -"85" "PASA_rcor-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-80.0" 1 "EndToEnd.compreh" 15467 5081 2859 0.562684510923047 -"86" "PASA_rcor-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "gene-overlap-80.0" 1 "Local.compreh" 15392 5078 2857 0.562623079952737 -"87" "PASA_rcor-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-80.0" 10 "EndToEnd.compreh" 15876 5154 2874 0.557625145518044 -"88" "PASA_rcor-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "gene-overlap-80.0" 10 "Local.compreh" 15835 5150 2873 0.557864077669903 -"89" "PASA_rcor-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-80.0" 100 "EndToEnd.compreh" 15855 5161 2879 0.557837628366596 -"90" "PASA_rcor-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "gene-overlap-80.0" 100 "Local.compreh" 15816 5149 2877 0.558749271703243 -"91" "PASA_rcor-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-80.0" 15 "EndToEnd.compreh" 15811 5164 2884 0.558481797056545 -"92" "PASA_rcor-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "gene-overlap-80.0" 15 "Local.compreh" 15758 5162 2881 0.558117008911275 -"93" "PASA_rcor-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-80.0" 5 "EndToEnd.compreh" 15924 5144 2873 0.558514774494557 -"94" "PASA_rcor-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "gene-overlap-80.0" 5 "Local.compreh" 15860 5135 2871 0.559104186952288 -"95" "PASA_rcor-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-80.0" 50 "EndToEnd.compreh" 15871 5157 2879 0.558270312197014 -"96" "PASA_rcor-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "gene-overlap-80.0" 50 "Local.compreh" 15812 5151 2877 0.558532323820617 -"97" "PASA_rcor-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-90.0" 1 "EndToEnd.compreh" 16635 5175 2895 0.559420289855072 -"98" "PASA_rcor-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "gene-overlap-90.0" 1 "Local.compreh" 16545 5177 2898 0.559783658489473 -"99" "PASA_rcor-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-90.0" 10 "EndToEnd.compreh" 17053 5254 2914 0.554625047582794 -"100" "PASA_rcor-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "gene-overlap-90.0" 10 "Local.compreh" 16991 5257 2918 0.555069431234544 -"101" "PASA_rcor-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-90.0" 100 "EndToEnd.compreh" 17034 5266 2922 0.554880364603114 -"102" "PASA_rcor-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "gene-overlap-90.0" 100 "Local.compreh" 16960 5261 2925 0.555977950959894 -"103" "PASA_rcor-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-90.0" 15 "EndToEnd.compreh" 16990 5265 2924 0.555365622032289 -"104" "PASA_rcor-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "gene-overlap-90.0" 15 "Local.compreh" 16904 5273 2929 0.55547126872748 -"105" "PASA_rcor-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-90.0" 5 "EndToEnd.compreh" 17099 5248 2915 0.555449695121951 -"106" "PASA_rcor-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "gene-overlap-90.0" 5 "Local.compreh" 17010 5247 2918 0.556127310844292 -"107" "PASA_rcor-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "gene-overlap-90.0" 50 "EndToEnd.compreh" 17048 5262 2922 0.555302166476625 -"108" "PASA_rcor-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "gene-overlap-90.0" 50 "Local.compreh" 16955 5263 2925 0.55576667300019 -"109" "PASA_rcor-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "minimal-overlap" 1 "EndToEnd.compreh" 10979 5370 2491 0.463873370577281 -"110" "PASA_rcor-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "minimal-overlap" 1 "Local.compreh" 10908 5372 2489 0.463328369322413 -"111" "PASA_rcor-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "minimal-overlap" 10 "EndToEnd.compreh" 11287 5453 2506 0.459563543003851 -"112" "PASA_rcor-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "minimal-overlap" 10 "Local.compreh" 11232 5459 2502 0.45832570067778 -"113" "PASA_rcor-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "minimal-overlap" 100 "EndToEnd.compreh" 11257 5473 2512 0.458980449479262 -"114" "PASA_rcor-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "minimal-overlap" 100 "Local.compreh" 11208 5463 2505 0.458539264140582 -"115" "PASA_rcor-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "minimal-overlap" 15 "EndToEnd.compreh" 11214 5467 2517 0.460398756173404 -"116" "PASA_rcor-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "minimal-overlap" 15 "Local.compreh" 11146 5469 2510 0.458950447979521 -"117" "PASA_rcor-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "minimal-overlap" 5 "EndToEnd.compreh" 11342 5443 2508 0.460775307734705 -"118" "PASA_rcor-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "minimal-overlap" 5 "Local.compreh" 11275 5446 2501 0.459236136614029 -"119" "PASA_rcor-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "minimal-overlap" 50 "EndToEnd.compreh" 11273 5469 2511 0.459133296763577 -"120" "PASA_rcor-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "minimal-overlap" 50 "Local.compreh" 11206 5461 2504 0.458524079838857 -"121" "PASA_rcor-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-10.0" 1 "EndToEnd.compreh" 13661 4914 2681 0.545584045584046 -"122" "PASA_rcor-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-10.0" 1 "Local.compreh" 13580 4910 2673 0.544399185336049 -"123" "PASA_rcor-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-10.0" 10 "EndToEnd.compreh" 14088 4989 2694 0.539987973541792 -"124" "PASA_rcor-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-10.0" 10 "Local.compreh" 14035 4978 2684 0.539172358376858 -"125" "PASA_rcor-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-10.0" 100 "EndToEnd.compreh" 14066 5009 2702 0.53942902775005 -"126" "PASA_rcor-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-10.0" 100 "Local.compreh" 14002 4983 2690 0.539835440497692 -"127" "PASA_rcor-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-10.0" 15 "EndToEnd.compreh" 13994 5005 2706 0.540659340659341 -"128" "PASA_rcor-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-10.0" 15 "Local.compreh" 13930 4994 2695 0.539647577092511 -"129" "PASA_rcor-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-10.0" 5 "EndToEnd.compreh" 14130 4986 2696 0.540713999197754 -"130" "PASA_rcor-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-10.0" 5 "Local.compreh" 14065 4967 2685 0.540567747131065 -"131" "PASA_rcor-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-10.0" 50 "EndToEnd.compreh" 14078 5005 2702 0.53986013986014 -"132" "PASA_rcor-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-10.0" 50 "Local.compreh" 13997 4984 2689 0.539526484751204 -"133" "PASA_rcor-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-20.0" 1 "EndToEnd.compreh" 13829 4895 2685 0.548518896833504 -"134" "PASA_rcor-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-20.0" 1 "Local.compreh" 13750 4888 2679 0.548076923076923 -"135" "PASA_rcor-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-20.0" 10 "EndToEnd.compreh" 14271 4965 2701 0.544008056394763 -"136" "PASA_rcor-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-20.0" 10 "Local.compreh" 14232 4951 2693 0.543930519087053 -"137" "PASA_rcor-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-20.0" 100 "EndToEnd.compreh" 14256 4983 2709 0.543648404575557 -"138" "PASA_rcor-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-20.0" 100 "Local.compreh" 14201 4956 2700 0.544794188861985 -"139" "PASA_rcor-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-20.0" 15 "EndToEnd.compreh" 14181 4979 2711 0.544486844747941 -"140" "PASA_rcor-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-20.0" 15 "Local.compreh" 14123 4967 2704 0.544392993758808 -"141" "PASA_rcor-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-20.0" 5 "EndToEnd.compreh" 14327 4961 2701 0.544446684136263 -"142" "PASA_rcor-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-20.0" 5 "Local.compreh" 14270 4939 2693 0.54525207531889 -"143" "PASA_rcor-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-20.0" 50 "EndToEnd.compreh" 14267 4979 2709 0.544085157662181 -"144" "PASA_rcor-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-20.0" 50 "Local.compreh" 14193 4957 2699 0.544482549929393 -"145" "PASA_rcor-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-30.0" 1 "EndToEnd.compreh" 13866 4881 2688 0.550706822372465 -"146" "PASA_rcor-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-30.0" 1 "Local.compreh" 13791 4877 2683 0.550133278654911 -"147" "PASA_rcor-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-30.0" 10 "EndToEnd.compreh" 14312 4952 2704 0.546042003231018 -"148" "PASA_rcor-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-30.0" 10 "Local.compreh" 14268 4942 2695 0.545325779036827 -"149" "PASA_rcor-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-30.0" 100 "EndToEnd.compreh" 14294 4968 2712 0.545893719806763 -"150" "PASA_rcor-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-30.0" 100 "Local.compreh" 14238 4946 2703 0.54650222401941 -"151" "PASA_rcor-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-30.0" 15 "EndToEnd.compreh" 14217 4967 2714 0.54640628145762 -"152" "PASA_rcor-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-30.0" 15 "Local.compreh" 14157 4958 2706 0.54578459056071 -"153" "PASA_rcor-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-30.0" 5 "EndToEnd.compreh" 14368 4949 2705 0.546575065669832 -"154" "PASA_rcor-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-30.0" 5 "Local.compreh" 14310 4930 2695 0.546653144016227 -"155" "PASA_rcor-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-30.0" 50 "EndToEnd.compreh" 14306 4964 2712 0.546333601933924 -"156" "PASA_rcor-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-30.0" 50 "Local.compreh" 14230 4947 2702 0.546189609864564 -"157" "PASA_rcor-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-40.0" 1 "EndToEnd.compreh" 13899 4874 2687 0.551292572835453 -"158" "PASA_rcor-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-40.0" 1 "Local.compreh" 13825 4868 2681 0.550739523418242 -"159" "PASA_rcor-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-40.0" 10 "EndToEnd.compreh" 14343 4944 2701 0.546318770226537 -"160" "PASA_rcor-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-40.0" 10 "Local.compreh" 14298 4933 2692 0.545712548145145 -"161" "PASA_rcor-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-40.0" 100 "EndToEnd.compreh" 14324 4960 2709 0.54616935483871 -"162" "PASA_rcor-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-40.0" 100 "Local.compreh" 14267 4939 2700 0.546669366268475 -"163" "PASA_rcor-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-40.0" 15 "EndToEnd.compreh" 14247 4958 2711 0.546793061718435 -"164" "PASA_rcor-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-40.0" 15 "Local.compreh" 14188 4949 2703 0.546170943624975 -"165" "PASA_rcor-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-40.0" 5 "EndToEnd.compreh" 14397 4941 2702 0.546852863792755 -"166" "PASA_rcor-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-40.0" 5 "Local.compreh" 14340 4923 2692 0.546821044078814 -"167" "PASA_rcor-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-40.0" 50 "EndToEnd.compreh" 14335 4956 2709 0.546610169491525 -"168" "PASA_rcor-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-40.0" 50 "Local.compreh" 14260 4940 2699 0.546356275303644 -"169" "PASA_rcor-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-50.0" 1 "EndToEnd.compreh" 13931 4869 2685 0.551447935921134 -"170" "PASA_rcor-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-50.0" 1 "Local.compreh" 13858 4862 2677 0.550596462361168 -"171" "PASA_rcor-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-50.0" 10 "EndToEnd.compreh" 14378 4938 2698 0.546375050627785 -"172" "PASA_rcor-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-50.0" 10 "Local.compreh" 14332 4928 2688 0.545454545454545 -"173" "PASA_rcor-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-50.0" 100 "EndToEnd.compreh" 14353 4952 2705 0.54624394184168 -"174" "PASA_rcor-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-50.0" 100 "Local.compreh" 14301 4932 2694 0.546228710462287 -"175" "PASA_rcor-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-50.0" 15 "EndToEnd.compreh" 14277 4951 2708 0.546960210058574 -"176" "PASA_rcor-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-50.0" 15 "Local.compreh" 14218 4944 2699 0.545914239482201 -"177" "PASA_rcor-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-50.0" 5 "EndToEnd.compreh" 14427 4936 2699 0.546799027552674 -"178" "PASA_rcor-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-50.0" 5 "Local.compreh" 14371 4918 2688 0.546563643757625 -"179" "PASA_rcor-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-50.0" 50 "EndToEnd.compreh" 14368 4947 2705 0.54679603800283 -"180" "PASA_rcor-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-50.0" 50 "Local.compreh" 14294 4934 2694 0.546007296311309 -"181" "PASA_rcor-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-60.0" 1 "EndToEnd.compreh" 13963 4864 2684 0.551809210526316 -"182" "PASA_rcor-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-60.0" 1 "Local.compreh" 13896 4857 2677 0.551163269507927 -"183" "PASA_rcor-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-60.0" 10 "EndToEnd.compreh" 14418 4931 2696 0.546745082133442 -"184" "PASA_rcor-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-60.0" 10 "Local.compreh" 14377 4922 2688 0.54611946363267 -"185" "PASA_rcor-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-60.0" 100 "EndToEnd.compreh" 14391 4945 2703 0.546612740141557 -"186" "PASA_rcor-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-60.0" 100 "Local.compreh" 14345 4926 2694 0.546894031668697 -"187" "PASA_rcor-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-60.0" 15 "EndToEnd.compreh" 14317 4944 2706 0.547330097087379 -"188" "PASA_rcor-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-60.0" 15 "Local.compreh" 14262 4938 2699 0.546577561765897 -"189" "PASA_rcor-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-60.0" 5 "EndToEnd.compreh" 14470 4929 2697 0.547169811320755 -"190" "PASA_rcor-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-60.0" 5 "Local.compreh" 14421 4912 2688 0.547231270358306 -"191" "PASA_rcor-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-60.0" 50 "EndToEnd.compreh" 14405 4940 2703 0.547165991902834 -"192" "PASA_rcor-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-60.0" 50 "Local.compreh" 14338 4928 2694 0.546672077922078 -"193" "PASA_rcor-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-70.0" 1 "EndToEnd.compreh" 14004 4860 2683 0.552057613168724 -"194" "PASA_rcor-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-70.0" 1 "Local.compreh" 13946 4854 2678 0.551709929954677 -"195" "PASA_rcor-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-70.0" 10 "EndToEnd.compreh" 14461 4929 2697 0.547169811320755 -"196" "PASA_rcor-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-70.0" 10 "Local.compreh" 14431 4920 2691 0.546951219512195 -"197" "PASA_rcor-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-70.0" 100 "EndToEnd.compreh" 14435 4942 2704 0.547146904087414 -"198" "PASA_rcor-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-70.0" 100 "Local.compreh" 14398 4925 2697 0.54761421319797 -"199" "PASA_rcor-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-70.0" 15 "EndToEnd.compreh" 14356 4941 2707 0.547864804695406 -"200" "PASA_rcor-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-70.0" 15 "Local.compreh" 14313 4936 2702 0.54740680713128 -"201" "PASA_rcor-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-70.0" 5 "EndToEnd.compreh" 14512 4926 2697 0.547503045066991 -"202" "PASA_rcor-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-70.0" 5 "Local.compreh" 14476 4910 2690 0.54786150712831 -"203" "PASA_rcor-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-70.0" 50 "EndToEnd.compreh" 14450 4937 2704 0.547701033016002 -"204" "PASA_rcor-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-70.0" 50 "Local.compreh" 14389 4927 2697 0.547391922062107 -"205" "PASA_rcor-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-80.0" 1 "EndToEnd.compreh" 14050 4860 2682 0.551851851851852 -"206" "PASA_rcor-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-80.0" 1 "Local.compreh" 13991 4854 2677 0.551503914297487 -"207" "PASA_rcor-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-80.0" 10 "EndToEnd.compreh" 14506 4928 2696 0.547077922077922 -"208" "PASA_rcor-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-80.0" 10 "Local.compreh" 14476 4919 2691 0.547062411059158 -"209" "PASA_rcor-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-80.0" 100 "EndToEnd.compreh" 14484 4941 2703 0.547055251973285 -"210" "PASA_rcor-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-80.0" 100 "Local.compreh" 14447 4924 2697 0.547725426482535 -"211" "PASA_rcor-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-80.0" 15 "EndToEnd.compreh" 14399 4940 2706 0.547773279352227 -"212" "PASA_rcor-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-80.0" 15 "Local.compreh" 14354 4935 2702 0.547517730496454 -"213" "PASA_rcor-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-80.0" 5 "EndToEnd.compreh" 14561 4925 2696 0.54741116751269 -"214" "PASA_rcor-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-80.0" 5 "Local.compreh" 14523 4909 2690 0.547973110613159 -"215" "PASA_rcor-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-80.0" 50 "EndToEnd.compreh" 14498 4936 2703 0.547609400324149 -"216" "PASA_rcor-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-80.0" 50 "Local.compreh" 14440 4926 2697 0.547503045066991 -"217" "PASA_rcor-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-90.0" 1 "EndToEnd.compreh" 14113 4859 2680 0.551553817657954 -"218" "PASA_rcor-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-90.0" 1 "Local.compreh" 14061 4854 2677 0.551503914297487 -"219" "PASA_rcor-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-90.0" 10 "EndToEnd.compreh" 14585 4927 2694 0.546783032271159 -"220" "PASA_rcor-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-90.0" 10 "Local.compreh" 14556 4920 2691 0.546951219512195 -"221" "PASA_rcor-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-90.0" 100 "EndToEnd.compreh" 14561 4940 2701 0.546761133603239 -"222" "PASA_rcor-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-90.0" 100 "Local.compreh" 14523 4924 2697 0.547725426482535 -"223" "PASA_rcor-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-90.0" 15 "EndToEnd.compreh" 14471 4939 2704 0.547479246811095 -"224" "PASA_rcor-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_15_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-90.0" 15 "Local.compreh" 14430 4936 2702 0.54740680713128 -"225" "PASA_rcor-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-90.0" 5 "EndToEnd.compreh" 14643 4924 2694 0.547116165718928 -"226" "PASA_rcor-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_5_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-90.0" 5 "Local.compreh" 14613 4910 2690 0.54786150712831 -"227" "PASA_rcor-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_EndToEnd.compreh_init_build" "rcor-only" "stringent-alignment-overlap-90.0" 50 "EndToEnd.compreh" 14574 4935 2701 0.547315096251267 -"228" "PASA_rcor-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_50_Local.compreh_init_build" "rcor-only" "stringent-alignment-overlap-90.0" 50 "Local.compreh" 14516 4926 2697 0.547503045066991 -"229" "PASA_trim-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-10.0" 1 "EndToEnd.compreh" 12582 5287 2939 0.555891810100246 -"230" "PASA_trim-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-10.0" 10 "EndToEnd.compreh" 12908 5383 2972 0.552108489689764 -"231" "PASA_trim-only_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-10.0" 100 "EndToEnd.compreh" 12855 5395 2982 0.552734012974977 -"232" "PASA_trim-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-20.0" 1 "EndToEnd.compreh" 12735 5256 2951 0.561453576864536 -"233" "PASA_trim-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-20.0" 10 "EndToEnd.compreh" 13069 5352 2985 0.557735426008969 -"234" "PASA_trim-only_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-20.0" 100 "EndToEnd.compreh" 13011 5365 2995 0.558247903075489 -"235" "PASA_trim-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-30.0" 1 "EndToEnd.compreh" 12897 5232 2960 0.565749235474006 -"236" "PASA_trim-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-30.0" 10 "EndToEnd.compreh" 13239 5325 2993 0.562065727699531 -"237" "PASA_trim-only_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-30.0" 100 "EndToEnd.compreh" 13182 5339 3003 0.56246488106387 -"238" "PASA_trim-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-40.0" 1 "EndToEnd.compreh" 13122 5204 2951 0.56706379707917 -"239" "PASA_trim-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-40.0" 10 "EndToEnd.compreh" 13469 5297 2986 0.563715310553143 -"240" "PASA_trim-only_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-40.0" 100 "EndToEnd.compreh" 13418 5311 2996 0.564112219920919 -"241" "PASA_trim-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-50.0" 1 "EndToEnd.compreh" 13384 5160 2956 0.572868217054264 -"242" "PASA_trim-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-50.0" 10 "EndToEnd.compreh" 13732 5255 2989 0.568791627021884 -"243" "PASA_trim-only_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-50.0" 100 "EndToEnd.compreh" 13677 5267 2999 0.569394342130245 -"244" "PASA_trim-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-60.0" 1 "EndToEnd.compreh" 13707 5130 2952 0.575438596491228 -"245" "PASA_trim-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-60.0" 10 "EndToEnd.compreh" 14070 5221 2982 0.571154951158782 -"246" "PASA_trim-only_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-60.0" 100 "EndToEnd.compreh" 14016 5232 2992 0.571865443425077 -"247" "PASA_trim-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-70.0" 1 "EndToEnd.compreh" 14153 5088 2924 0.574685534591195 -"248" "PASA_trim-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-70.0" 10 "EndToEnd.compreh" 14513 5179 2952 0.569994207375941 -"249" "PASA_trim-only_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-70.0" 100 "EndToEnd.compreh" 14454 5190 2962 0.570712909441233 -"250" "PASA_trim-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-80.0" 1 "EndToEnd.compreh" 14850 5031 2856 0.56768038163387 -"251" "PASA_trim-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-80.0" 10 "EndToEnd.compreh" 15216 5119 2884 0.563391287360813 -"252" "PASA_trim-only_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-80.0" 100 "EndToEnd.compreh" 15159 5128 2893 0.564157566302652 -"253" "PASA_trim-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-90.0" 1 "EndToEnd.compreh" 16016 5080 2859 0.562795275590551 -"254" "PASA_trim-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-90.0" 10 "EndToEnd.compreh" 16395 5167 2884 0.55815753822334 -"255" "PASA_trim-only_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "gene-overlap-90.0" 100 "EndToEnd.compreh" 16334 5175 2892 0.558840579710145 -"256" "PASA_trim-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "minimal-overlap" 1 "EndToEnd.compreh" 10612 5353 2472 0.461797123108537 -"257" "PASA_trim-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "minimal-overlap" 10 "EndToEnd.compreh" 10851 5440 2483 0.456433823529412 -"258" "PASA_trim-only_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "minimal-overlap" 100 "EndToEnd.compreh" 10797 5452 2492 0.457079970652971 -"259" "PASA_trim-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-10.0" 1 "EndToEnd.compreh" 13162 4876 2662 0.545939294503691 -"260" "PASA_trim-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-10.0" 10 "EndToEnd.compreh" 13524 4953 2682 0.541490006056935 -"261" "PASA_trim-only_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-10.0" 100 "EndToEnd.compreh" 13466 4962 2692 0.542523176138654 -"262" "PASA_trim-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-20.0" 1 "EndToEnd.compreh" 13513 4843 2676 0.552550072269255 -"263" "PASA_trim-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-20.0" 10 "EndToEnd.compreh" 13885 4922 2693 0.547135310849248 -"264" "PASA_trim-only_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-20.0" 100 "EndToEnd.compreh" 13836 4930 2703 0.548275862068966 -"265" "PASA_trim-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-30.0" 1 "EndToEnd.compreh" 13545 4835 2678 0.55387797311272 -"266" "PASA_trim-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-30.0" 10 "EndToEnd.compreh" 13923 4912 2694 0.548452768729642 -"267" "PASA_trim-only_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-30.0" 100 "EndToEnd.compreh" 13872 4920 2704 0.549593495934959 -"268" "PASA_trim-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-40.0" 1 "EndToEnd.compreh" 13584 4827 2676 0.554381603480423 -"269" "PASA_trim-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-40.0" 10 "EndToEnd.compreh" 13967 4903 2693 0.549255557821742 -"270" "PASA_trim-only_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-40.0" 100 "EndToEnd.compreh" 13915 4911 2703 0.550397067806964 -"271" "PASA_trim-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-50.0" 1 "EndToEnd.compreh" 13629 4817 2671 0.554494498650612 -"272" "PASA_trim-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-50.0" 10 "EndToEnd.compreh" 14010 4892 2688 0.549468520032706 -"273" "PASA_trim-only_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-50.0" 100 "EndToEnd.compreh" 13954 4900 2698 0.550612244897959 -"274" "PASA_trim-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-60.0" 1 "EndToEnd.compreh" 13662 4813 2669 0.554539788073966 -"275" "PASA_trim-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-60.0" 10 "EndToEnd.compreh" 14051 4885 2686 0.549846468781986 -"276" "PASA_trim-only_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-60.0" 100 "EndToEnd.compreh" 13991 4893 2696 0.550991211935418 -"277" "PASA_trim-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-70.0" 1 "EndToEnd.compreh" 13707 4805 2667 0.555046826222685 -"278" "PASA_trim-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-70.0" 10 "EndToEnd.compreh" 14107 4876 2684 0.55045118949959 -"279" "PASA_trim-only_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-70.0" 100 "EndToEnd.compreh" 14042 4884 2694 0.551597051597052 -"280" "PASA_trim-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-80.0" 1 "EndToEnd.compreh" 13771 4806 2672 0.555971702039118 -"281" "PASA_trim-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-80.0" 10 "EndToEnd.compreh" 14171 4877 2689 0.55136354316178 -"282" "PASA_trim-only_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-80.0" 100 "EndToEnd.compreh" 14107 4885 2699 0.552507676560901 -"283" "PASA_trim-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-90.0" 1 "EndToEnd.compreh" 13857 4802 2669 0.555810079133694 -"284" "PASA_trim-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-90.0" 10 "EndToEnd.compreh" 14254 4878 2687 0.550840508405084 -"285" "PASA_trim-only_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-only" "stringent-alignment-overlap-90.0" 100 "EndToEnd.compreh" 14179 4883 2699 0.552733975015359 -"286" "PASA_trim-rcor_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-10.0" 1 "EndToEnd.compreh" 13069 5280 2994 0.567045454545455 -"287" "PASA_trim-rcor_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-10.0" 10 "EndToEnd.compreh" 13437 5374 3020 0.561965016747302 -"288" "PASA_trim-rcor_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-10.0" 100 "EndToEnd.compreh" 13431 5368 3021 0.562779433681073 -"289" "PASA_trim-rcor_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-20.0" 1 "EndToEnd.compreh" 13220 5250 3009 0.573142857142857 -"290" "PASA_trim-rcor_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-20.0" 10 "EndToEnd.compreh" 13595 5344 3036 0.56811377245509 -"291" "PASA_trim-rcor_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-20.0" 100 "EndToEnd.compreh" 13585 5338 3037 0.568939677781941 -"292" "PASA_trim-rcor_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-30.0" 1 "EndToEnd.compreh" 13414 5225 3015 0.577033492822966 -"293" "PASA_trim-rcor_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-30.0" 10 "EndToEnd.compreh" 13802 5314 3043 0.572638313887843 -"294" "PASA_trim-rcor_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-30.0" 100 "EndToEnd.compreh" 13788 5310 3043 0.573069679849341 -"295" "PASA_trim-rcor_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-40.0" 1 "EndToEnd.compreh" 13621 5189 3011 0.580265947195992 -"296" "PASA_trim-rcor_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-40.0" 10 "EndToEnd.compreh" 14013 5279 3038 0.575487781776852 -"297" "PASA_trim-rcor_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-40.0" 100 "EndToEnd.compreh" 14002 5274 3039 0.576222980659841 -"298" "PASA_trim-rcor_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-50.0" 1 "EndToEnd.compreh" 13876 5161 3010 0.583220306142221 -"299" "PASA_trim-rcor_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-50.0" 10 "EndToEnd.compreh" 14288 5247 3036 0.578616352201258 -"300" "PASA_trim-rcor_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-50.0" 100 "EndToEnd.compreh" 14269 5240 3037 0.579580152671756 -"301" "PASA_trim-rcor_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-60.0" 1 "EndToEnd.compreh" 14232 5120 2987 0.5833984375 -"302" "PASA_trim-rcor_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-60.0" 10 "EndToEnd.compreh" 14639 5203 3012 0.578896790313281 -"303" "PASA_trim-rcor_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-60.0" 100 "EndToEnd.compreh" 14627 5196 3013 0.579869130100077 -"304" "PASA_trim-rcor_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-70.0" 1 "EndToEnd.compreh" 14711 5084 2963 0.582808811959087 -"305" "PASA_trim-rcor_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-70.0" 10 "EndToEnd.compreh" 15117 5166 2985 0.577816492450639 -"306" "PASA_trim-rcor_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-70.0" 100 "EndToEnd.compreh" 15106 5159 2987 0.578988176003101 -"307" "PASA_trim-rcor_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-80.0" 1 "EndToEnd.compreh" 15427 5049 2916 0.577540106951872 -"308" "PASA_trim-rcor_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-80.0" 10 "EndToEnd.compreh" 15839 5127 2931 0.571679344645992 -"309" "PASA_trim-rcor_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-80.0" 100 "EndToEnd.compreh" 15827 5121 2934 0.572934973637961 -"310" "PASA_trim-rcor_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-90.0" 1 "EndToEnd.compreh" 16617 5115 2932 0.573216031280547 -"311" "PASA_trim-rcor_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-90.0" 10 "EndToEnd.compreh" 17039 5190 2943 0.567052023121387 -"312" "PASA_trim-rcor_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "gene-overlap-90.0" 100 "EndToEnd.compreh" 17026 5185 2948 0.568563162970106 -"313" "PASA_trim-rcor_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "minimal-overlap" 1 "EndToEnd.compreh" 10988 5336 2533 0.474700149925038 -"314" "PASA_trim-rcor_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "minimal-overlap" 10 "EndToEnd.compreh" 11302 5438 2549 0.468738506803972 -"315" "PASA_trim-rcor_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "minimal-overlap" 100 "EndToEnd.compreh" 11296 5429 2546 0.46896297660711 -"316" "PASA_trim-rcor_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-10.0" 1 "EndToEnd.compreh" 13632 4887 2728 0.558215674237774 -"317" "PASA_trim-rcor_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-10.0" 10 "EndToEnd.compreh" 14071 4960 2745 0.553427419354839 -"318" "PASA_trim-rcor_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-10.0" 100 "EndToEnd.compreh" 14072 4960 2747 0.55383064516129 -"319" "PASA_trim-rcor_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-20.0" 1 "EndToEnd.compreh" 13791 4862 2741 0.563759769642123 -"320" "PASA_trim-rcor_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-20.0" 10 "EndToEnd.compreh" 14246 4934 2755 0.55837049047426 -"321" "PASA_trim-rcor_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-20.0" 100 "EndToEnd.compreh" 14252 4932 2760 0.559610705596107 -"322" "PASA_trim-rcor_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-30.0" 1 "EndToEnd.compreh" 13828 4853 2738 0.564187100762415 -"323" "PASA_trim-rcor_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-30.0" 10 "EndToEnd.compreh" 14288 4924 2752 0.55889520714866 -"324" "PASA_trim-rcor_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-30.0" 100 "EndToEnd.compreh" 14291 4921 2758 0.560455192034139 -"325" "PASA_trim-rcor_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-40.0" 1 "EndToEnd.compreh" 13856 4848 2737 0.564562706270627 -"326" "PASA_trim-rcor_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-40.0" 10 "EndToEnd.compreh" 14321 4917 2748 0.558877364246492 -"327" "PASA_trim-rcor_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-40.0" 100 "EndToEnd.compreh" 14320 4914 2754 0.56043956043956 -"328" "PASA_trim-rcor_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-50.0" 1 "EndToEnd.compreh" 13885 4839 2730 0.564166150030998 -"329" "PASA_trim-rcor_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-50.0" 10 "EndToEnd.compreh" 14351 4910 2742 0.558452138492872 -"330" "PASA_trim-rcor_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-50.0" 100 "EndToEnd.compreh" 14340 4907 2748 0.560016303240269 -"331" "PASA_trim-rcor_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-60.0" 1 "EndToEnd.compreh" 13928 4833 2730 0.564866542520174 -"332" "PASA_trim-rcor_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-60.0" 10 "EndToEnd.compreh" 14389 4904 2742 0.559135399673736 -"333" "PASA_trim-rcor_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-60.0" 100 "EndToEnd.compreh" 14378 4901 2748 0.560701897571924 -"334" "PASA_trim-rcor_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-70.0" 1 "EndToEnd.compreh" 13970 4830 2730 0.565217391304348 -"335" "PASA_trim-rcor_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-70.0" 10 "EndToEnd.compreh" 14434 4900 2741 0.559387755102041 -"336" "PASA_trim-rcor_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-70.0" 100 "EndToEnd.compreh" 14417 4897 2747 0.560955687155401 -"337" "PASA_trim-rcor_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-80.0" 1 "EndToEnd.compreh" 14011 4828 2729 0.565244407622204 -"338" "PASA_trim-rcor_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-80.0" 10 "EndToEnd.compreh" 14480 4900 2740 0.559183673469388 -"339" "PASA_trim-rcor_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-80.0" 100 "EndToEnd.compreh" 14459 4897 2746 0.560751480498264 -"340" "PASA_trim-rcor_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-90.0" 1 "EndToEnd.compreh" 14072 4829 2732 0.565748602195071 -"341" "PASA_trim-rcor_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-90.0" 10 "EndToEnd.compreh" 14550 4902 2743 0.559567523459812 -"342" "PASA_trim-rcor_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_EndToEnd.compreh_init_build" "trim-rcor" "stringent-alignment-overlap-90.0" 100 "EndToEnd.compreh" 14526 4899 2749 0.561134925494999 -"343" "PASA_unprocessed_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "gene-overlap-10.0" 1 "Local.compreh" 12660 5319 2931 0.551043429216018 -"344" "PASA_unprocessed_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "gene-overlap-10.0" 10 "Local.compreh" 12971 5383 2965 0.550808099572729 -"345" "PASA_unprocessed_gene-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "gene-overlap-10.0" 100 "Local.compreh" 12964 5387 2969 0.551141637274921 -"346" "PASA_unprocessed_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "gene-overlap-20.0" 1 "Local.compreh" 12824 5291 2943 0.556227556227556 -"347" "PASA_unprocessed_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "gene-overlap-20.0" 10 "Local.compreh" 13131 5355 2976 0.555742296918768 -"348" "PASA_unprocessed_gene-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "gene-overlap-20.0" 100 "Local.compreh" 13126 5359 2981 0.556260496361261 -"349" "PASA_unprocessed_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "gene-overlap-30.0" 1 "Local.compreh" 12993 5268 2954 0.560744115413819 -"350" "PASA_unprocessed_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "gene-overlap-30.0" 10 "Local.compreh" 13312 5331 2986 0.560120052522979 -"351" "PASA_unprocessed_gene-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "gene-overlap-30.0" 100 "Local.compreh" 13307 5335 2991 0.560637300843486 -"352" "PASA_unprocessed_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "gene-overlap-40.0" 1 "Local.compreh" 13213 5238 2952 0.563573883161512 -"353" "PASA_unprocessed_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "gene-overlap-40.0" 10 "Local.compreh" 13536 5302 2986 0.563183704262542 -"354" "PASA_unprocessed_gene-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "gene-overlap-40.0" 100 "Local.compreh" 13532 5306 2991 0.563701470033924 -"355" "PASA_unprocessed_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "gene-overlap-50.0" 1 "Local.compreh" 13477 5196 2949 0.567551963048499 -"356" "PASA_unprocessed_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "gene-overlap-50.0" 10 "Local.compreh" 13804 5264 2983 0.566679331306991 -"357" "PASA_unprocessed_gene-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "gene-overlap-50.0" 100 "Local.compreh" 13797 5268 2988 0.567198177676538 -"358" "PASA_unprocessed_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "gene-overlap-60.0" 1 "Local.compreh" 13806 5153 2933 0.569183000194062 -"359" "PASA_unprocessed_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "gene-overlap-60.0" 10 "Local.compreh" 14135 5220 2964 0.567816091954023 -"360" "PASA_unprocessed_gene-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "gene-overlap-60.0" 100 "Local.compreh" 14125 5225 2969 0.56822966507177 -"361" "PASA_unprocessed_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "gene-overlap-70.0" 1 "Local.compreh" 14253 5107 2896 0.567064813001762 -"362" "PASA_unprocessed_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "gene-overlap-70.0" 10 "Local.compreh" 14574 5179 2928 0.565360108128982 -"363" "PASA_unprocessed_gene-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "gene-overlap-70.0" 100 "Local.compreh" 14563 5182 2933 0.565997684291779 -"364" "PASA_unprocessed_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "gene-overlap-80.0" 1 "Local.compreh" 14931 5066 2842 0.560994867745756 -"365" "PASA_unprocessed_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "gene-overlap-80.0" 10 "Local.compreh" 15266 5125 2867 0.559414634146342 -"366" "PASA_unprocessed_gene-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "gene-overlap-80.0" 100 "Local.compreh" 15250 5127 2871 0.559976594499707 -"367" "PASA_unprocessed_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "gene-overlap-90.0" 1 "Local.compreh" 16156 5122 2854 0.557204217102694 -"368" "PASA_unprocessed_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "gene-overlap-90.0" 10 "Local.compreh" 16495 5176 2876 0.55564142194745 -"369" "PASA_unprocessed_gene-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "gene-overlap-90.0" 100 "Local.compreh" 16480 5179 2881 0.556284997103688 -"370" "PASA_unprocessed_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "minimal-overlap" 1 "Local.compreh" 10618 5380 2445 0.454460966542751 -"371" "PASA_unprocessed_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "minimal-overlap" 10 "Local.compreh" 10840 5443 2455 0.451038030497887 -"372" "PASA_unprocessed_minimal-overlap_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "minimal-overlap" 100 "Local.compreh" 10835 5450 2461 0.451559633027523 -"373" "PASA_unprocessed_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-10.0" 1 "Local.compreh" 13215 4882 2628 0.538303973781237 -"374" "PASA_unprocessed_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-10.0" 10 "Local.compreh" 13559 4937 2649 0.536560664371076 -"375" "PASA_unprocessed_stringent-alignment-overlap-10.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-10.0" 100 "Local.compreh" 13560 4942 2654 0.537029542695265 -"376" "PASA_unprocessed_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-20.0" 1 "Local.compreh" 13587 4847 2642 0.545079430575614 -"377" "PASA_unprocessed_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-20.0" 10 "Local.compreh" 13939 4901 2662 0.543154458273822 -"378" "PASA_unprocessed_stringent-alignment-overlap-20.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-20.0" 100 "Local.compreh" 13945 4905 2666 0.543527013251784 -"379" "PASA_unprocessed_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-30.0" 1 "Local.compreh" 13621 4839 2641 0.545773920231453 -"380" "PASA_unprocessed_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-30.0" 10 "Local.compreh" 13984 4894 2665 0.544544340008173 -"381" "PASA_unprocessed_stringent-alignment-overlap-30.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-30.0" 100 "Local.compreh" 13988 4898 2669 0.54491629236423 -"382" "PASA_unprocessed_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-40.0" 1 "Local.compreh" 13664 4828 2638 0.546396023198012 -"383" "PASA_unprocessed_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-40.0" 10 "Local.compreh" 14036 4883 2663 0.545361458120008 -"384" "PASA_unprocessed_stringent-alignment-overlap-40.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-40.0" 100 "Local.compreh" 14029 4887 2667 0.54573357888275 -"385" "PASA_unprocessed_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-50.0" 1 "Local.compreh" 13704 4819 2635 0.546793940651587 -"386" "PASA_unprocessed_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-50.0" 10 "Local.compreh" 14086 4874 2660 0.545752974969224 -"387" "PASA_unprocessed_stringent-alignment-overlap-50.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-50.0" 100 "Local.compreh" 14075 4876 2662 0.545939294503691 -"388" "PASA_unprocessed_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-60.0" 1 "Local.compreh" 13736 4812 2632 0.546965918536991 -"389" "PASA_unprocessed_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-60.0" 10 "Local.compreh" 14129 4865 2658 0.546351490236382 -"390" "PASA_unprocessed_stringent-alignment-overlap-60.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-60.0" 100 "Local.compreh" 14116 4867 2660 0.546537908362441 -"391" "PASA_unprocessed_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-70.0" 1 "Local.compreh" 13787 4804 2628 0.547044129891757 -"392" "PASA_unprocessed_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-70.0" 10 "Local.compreh" 14190 4856 2652 0.546128500823723 -"393" "PASA_unprocessed_stringent-alignment-overlap-70.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-70.0" 100 "Local.compreh" 14173 4858 2655 0.546521202140799 -"394" "PASA_unprocessed_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-80.0" 1 "Local.compreh" 13845 4800 2626 0.547083333333333 -"395" "PASA_unprocessed_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-80.0" 10 "Local.compreh" 14247 4852 2650 0.546166529266282 -"396" "PASA_unprocessed_stringent-alignment-overlap-80.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-80.0" 100 "Local.compreh" 14231 4854 2653 0.546559538524928 -"397" "PASA_unprocessed_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_1_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-90.0" 1 "Local.compreh" 13924 4801 2627 0.547177671318475 -"398" "PASA_unprocessed_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_10_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-90.0" 10 "Local.compreh" 14323 4853 2650 0.546053987224397 -"399" "PASA_unprocessed_stringent-alignment-overlap-90.0_trinity_5781-5782_Q_IP_merged.multi-hit-mode_100_Local.compreh_init_build" "unprocessed" "stringent-alignment-overlap-90.0" 100 "Local.compreh" 14303 4854 2653 0.546559538524928 diff --git a/results/2022-1201/notebook/AG.2023-0106.Trinity_optimization.pptx b/results/2022-1201/notebook/AG.2023-0106.Trinity_optimization.pptx deleted file mode 100644 index 0294901..0000000 Binary files a/results/2022-1201/notebook/AG.2023-0106.Trinity_optimization.pptx and /dev/null differ diff --git a/results/2022-1201/notebook/AG.2023-0110.about-my-annotations.pdf b/results/2022-1201/notebook/AG.2023-0110.about-my-annotations.pdf deleted file mode 100644 index 8e438cb..0000000 Binary files a/results/2022-1201/notebook/AG.2023-0110.about-my-annotations.pdf and /dev/null differ diff --git a/results/2022-1201/notebook/Behera-et-al.book-chapter.pdf b/results/2022-1201/notebook/Behera-et-al.book-chapter.pdf deleted file mode 100644 index dc7813e..0000000 Binary files a/results/2022-1201/notebook/Behera-et-al.book-chapter.pdf and /dev/null differ diff --git a/results/2022-1201/notebook/Haas-et-al.review.Figure-2.png b/results/2022-1201/notebook/Haas-et-al.review.Figure-2.png deleted file mode 100644 index c7c05da..0000000 Binary files a/results/2022-1201/notebook/Haas-et-al.review.Figure-2.png and /dev/null differ diff --git a/results/2022-1201/notebook/Haas-et-al.review.pdf b/results/2022-1201/notebook/Haas-et-al.review.pdf deleted file mode 100644 index 47150b3..0000000 Binary files a/results/2022-1201/notebook/Haas-et-al.review.pdf and /dev/null differ diff --git a/results/2022-1201/notebook/KA.2022-1202.questions-comments-notes.1.png b/results/2022-1201/notebook/KA.2022-1202.questions-comments-notes.1.png deleted file mode 100644 index 7813afa..0000000 Binary files a/results/2022-1201/notebook/KA.2022-1202.questions-comments-notes.1.png and /dev/null differ diff --git a/results/2022-1201/notebook/KA.2022-1202.questions-comments-notes.2.png b/results/2022-1201/notebook/KA.2022-1202.questions-comments-notes.2.png deleted file mode 100644 index 210d0f1..0000000 Binary files a/results/2022-1201/notebook/KA.2022-1202.questions-comments-notes.2.png and /dev/null differ diff --git a/results/2022-1201/notebook/KA.2022-1202.questions-comments-notes.txt b/results/2022-1201/notebook/KA.2022-1202.questions-comments-notes.txt deleted file mode 100644 index a5fca50..0000000 --- a/results/2022-1201/notebook/KA.2022-1202.questions-comments-notes.txt +++ /dev/null @@ -1,66 +0,0 @@ -The following are key notes from reading Alison's QE proposal: -```txt -Antisense transcript classification schema: - I. By length - a. 3’ end only - b. full gene - c. into sense promotor - II. By stability: "if a transcript is not above a certain threshold in input, it will be - classified as rapidly degraded" - -#QUESTION For II, what is the input? How will it be measured, assessed, and thresholded? -``` -```txt -I. Schema for assessing "the interest" of antisense transcripts: - a. high antisense transcription - b. uniqueness to Q - c. potential biological effect on Q if sense strand is transcribed - -II. Home in on candidates from the above that... - a. extend across the full length of sense gene - b. appears to be "shorter 3’ transcript [that] looks like it could be inducing early - termination of sense transcription" - -#QUESTION How is antisense transcription evaluated to be "high" in Ia? -#QUESTION How to assess Ic? -#QUESTION How can you tell IIb just by looking at IGV tracks? You see the end of sense - transcription in the 3' UTR together with the antisense transcription specific - to/overlapping the 3' UTR? -``` -`#QUESTION` Are these still accurate? Have they changed at all since writing them? - - -- `#IMPORTANT` Need a carefully defined, curated list of issues that we see in the results of transcriptome assembly, including visual examples - - `#QUESTION` What do we see and how does that compare to what we expect/"want"? - - I will put these together for a discussion with Brian Haas, who can guide us in what parts of the pipeline to change and/or what program (`Trinity` and/or `PASA`) parameters to tune - + Have touched base with Alison and Toshi about this; they're OK with me discussing the project and its issues, including evidence of the issues such as IGV screenshots - - `#QUESTION` Does Alison have lab notebook entries and/or any other documentation that covers this? For example, from combing through IGV, did she take notes on what she was saw and found to be problematic? - + If so, it'd be great if she copied and sent that/those to me (if it's physical, then paper copies; if digital, then point to it on the tsukiyamalab server and/or message it to me) - + If not, it'd be great for Alison to do the following bullet - - `#IMPORTANT` The most helpful thing for me, I think, would be Alison's rough notes that include the following: - + documentation for a small number of "problem categories" that describe... - * what the specific problem is, e.g., "There is transcription beyond a given part of a gene per the Ensembl `sacCer3` annotation" - * what we expect and/or "want," e.g., "We expect/want this to be included in the annotation for that transcript after having run `Trinity`/`PASA`" - + IGV screenshots and/or genomic coordinates of examples - + quick and dirty notes would be just fine as long as they cover the important issues - - -- Other questions for Alison - - `#QUESTION` Did she try running `Trinity` with other parameters? Did she record any of those experiments, save the outfiles, take notes on the issues from those, etc.? - + If so, it'd be great to get those, including any observations, documentation, etc. - + If not, no big deal - - `#QUESTION` When evaluating nascent RNA expression, do we need to consider introns, splicing, etc. at all? Like, would we expect nascent or stready-state 4tU-seq signal to run into introns or skip them? - - `#QUESTION` `#IMPORTANT` What are the detailed steps that Alison was taking to address and work with the subpar annotation? Alison mentioned implementing some set operations with `bedtools`... - + `#TASK` It'd be great to get a systematic list of what Alison was trying to address and how she was trying to address it, including... - * the problems identified (itemized/categorized) - * the substeps for each step she was doing to address each problem - * whether that step was implemented in `bedtools` (or something) or was something she was addressing manually - + basically, just need... - * the issues, - * the things to address each issue with any rationale, etc., and - * the logic or steps to do the thing that addresses it, regardless of whether the logic/steps are performed with a program or done by hand - - `#QUESTION` I was assuming that steady-state 4tu-seq signal is the same as RNA-seq signal, but is that assumption correct? If not, then how are signals from each experiment different and in what ways? - - Is there a reason Alison aligned her data with Bowtie 2, a non-splice-aware aligner, versus something like HISAT2 or STAR, both splice-aware aligners? - - Is 4tU-seq signal, be it nascent and/or stead-state, more like, say, ChIP-seq signal than RNA-seq signal? - - `#QUESTION` In Alison's genome-guided `Trinity`-assembled transcriptome (parameters from from Blevins et al. (Mar Alba), *bioRxiv* 2019-0313), are there *K. lactis* reads in these `fastq` files, in addition to *S. cerevisiae* reads? - + `#ANSWER` Yes, and 20 S reads too (`#QUESTION` This is copied my notes from 2022-1025: Is this correct?) diff --git a/results/2022-1201/notebook/KA.2022-1221.building-calls-incomplete-runs.xlsx b/results/2022-1201/notebook/KA.2022-1221.building-calls-incomplete-runs.xlsx deleted file mode 100644 index b0e7887..0000000 Binary files a/results/2022-1201/notebook/KA.2022-1221.building-calls-incomplete-runs.xlsx and /dev/null differ diff --git a/results/2022-1201/notebook/KA.2023-0105.posting-to-the-PASA-forum.png b/results/2022-1201/notebook/KA.2023-0105.posting-to-the-PASA-forum.png deleted file mode 100644 index fcf24df..0000000 Binary files a/results/2022-1201/notebook/KA.2023-0105.posting-to-the-PASA-forum.png and /dev/null differ diff --git a/results/2022-1201/notebook/KA.2023-0106.PasaWeb-table.trinity_5781-5782_Q_IP_merged.rcor.multi-hit-mode_100_Local.png b/results/2022-1201/notebook/KA.2023-0106.PasaWeb-table.trinity_5781-5782_Q_IP_merged.rcor.multi-hit-mode_100_Local.png deleted file mode 100644 index 77afb45..0000000 Binary files a/results/2022-1201/notebook/KA.2023-0106.PasaWeb-table.trinity_5781-5782_Q_IP_merged.rcor.multi-hit-mode_100_Local.png and /dev/null differ diff --git a/results/2022-1201/notebook/KA.2023-0106.PasaWeb-table.trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.png b/results/2022-1201/notebook/KA.2023-0106.PasaWeb-table.trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.png deleted file mode 100644 index 3276994..0000000 Binary files a/results/2022-1201/notebook/KA.2023-0106.PasaWeb-table.trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.png and /dev/null differ diff --git a/results/2022-1201/notebook/KA.2023-0111.presentation.pptx b/results/2022-1201/notebook/KA.2023-0111.presentation.pptx deleted file mode 100644 index 3d170e0..0000000 Binary files a/results/2022-1201/notebook/KA.2023-0111.presentation.pptx and /dev/null differ diff --git a/results/2022-1201/notebook/Pertea-et-al.Figure-1.jpeg b/results/2022-1201/notebook/Pertea-et-al.Figure-1.jpeg deleted file mode 100644 index 209b537..0000000 Binary files a/results/2022-1201/notebook/Pertea-et-al.Figure-1.jpeg and /dev/null differ diff --git a/results/2022-1201/notebook/Raghavan-et-al.review.Figure-1.png b/results/2022-1201/notebook/Raghavan-et-al.review.Figure-1.png deleted file mode 100644 index 5964515..0000000 Binary files a/results/2022-1201/notebook/Raghavan-et-al.review.Figure-1.png and /dev/null differ diff --git a/results/2022-1201/notebook/Raghavan-et-al.review.Figure-3-a-b.png b/results/2022-1201/notebook/Raghavan-et-al.review.Figure-3-a-b.png deleted file mode 100644 index f683b35..0000000 Binary files a/results/2022-1201/notebook/Raghavan-et-al.review.Figure-3-a-b.png and /dev/null differ diff --git a/results/2022-1201/notebook/Raghavan-et-al.review.Figure-3-c-d.png b/results/2022-1201/notebook/Raghavan-et-al.review.Figure-3-c-d.png deleted file mode 100644 index 50eb44a..0000000 Binary files a/results/2022-1201/notebook/Raghavan-et-al.review.Figure-3-c-d.png and /dev/null differ diff --git a/results/2022-1201/notebook/Raghavan-et-al.review.pdf b/results/2022-1201/notebook/Raghavan-et-al.review.pdf deleted file mode 100644 index f48e675..0000000 Binary files a/results/2022-1201/notebook/Raghavan-et-al.review.pdf and /dev/null differ diff --git a/results/2022-1201/notebook/Raghavan-et-al.review.table-s1.csv b/results/2022-1201/notebook/Raghavan-et-al.review.table-s1.csv deleted file mode 100644 index 330a836..0000000 --- a/results/2022-1201/notebook/Raghavan-et-al.review.table-s1.csv +++ /dev/null @@ -1,25 +0,0 @@ -Paper Year DOI Tool Databases Paired end Read length Strand specific Assembler BUSCO Other Figshare -Yadav et al. 2020 https://doi.org/10.1371/journal.pone.0234903 Trinotate NR, SP, KEGG, COG Yes 150 No Trinity Yes None No -Ceschin et al. 2020 https://doi.org/10.1038/s41598-020-57961-4 Annocript SP, TREMBL, CDD, Rfam, Yes 100 No Trinity Yes None No -Pinosio et al. 2021 https://doi.org/10.1016/j.margen.2020.100792 Blastx + Blast2GO (for GO annotation) NR arthropoda, KEGG, EC Yes 150 No Trinity Yes MISA for microsatellite SSR annotation No -Galachyants et al. 2019 https://doi.org/10.1038/s41597-019-0191-6 Trinotate, Trapid (PLAZA 2.5 DB), Mercator (all DBs except IPS; genome annotator but used here) NR, SP, KEGG, COG Yes 125 No Trinity (via drap) Yes None Yes -Moreno-Santillán et al. 2019 https://doi.org/10.1038/s41598-019-42560-9 Trinotate SP, Pfam Yes 101 No Trinity Yes OrthoFinder No -Chabikwa et al. 2020 https://doi.org/10.1038/s41597-019-0350-9 blastx UniProt Yes 125, 150 No Trinity Yes None Yes -Mahmood et al. 2020 https://doi.org/10.1038/s41598-020-70406-2 OmicsBox (Blast2Go + InterProScan) Blast2GO default databases Yes 100 Yes Trinity Yes None No -Mora-Ortiz et al. 2016 https://doi.org/10.1186/s12864-016-3083-6 Blast2Go Refseq_protein Yes 100 No Trinity No MISA for microsatellite SSR annotation No -Sayadi et al. 2016 https://doi.org/10.1371/journal.pone.0158565 Trinotate + Blast2Go + InterProScan NR, SP, UniRef90, KEGG, EggNog Yes 100 No Trinity Yes None Yes -Lee et al. 2015 https://doi.org/10.1186/s12864-015-2124-x blast NT sequences from bats Yes 125 No Trinity No None No -Carruthers et al. 2018 https://doi.org/10.1186/s12864-017-4379-x blastp + PANTHER webserver (for GO) UniProt, PantherDB Yes 75 No Trinity Yes OrthoFinder but for QC No -Asai et al. 2020 https://doi.org/10.3390/md18080392 Blast2GO (Blastx + InterProScan) + KAAS server for KEGG NR, SP, KEGG Yes 50 No Trinity No WEGO online tool for plotting GO terms No -Ayachit et al. 2019 https://doi.org/10.1038/s41598-019-51355-x Trinotate UniProt, Pfam, CDD, KOG Yes 200 No Trinity No MISA + CPC for predicting lncRNA + FunctionAnnotation webserver used in addition to Trinotate No -Liu et al. 2021 https://doi.org/10.3390/plants10040649 Diamond NR, NT, Pfam, KEGG, KOG, SP No NA No None (SMRTseq) No MISA + iTAK (plant transcription factor pred) + CNCIv2, Pfam-scan, CPCvcpc-0.9-r2, PLEKv1.2 together for lncRNA prediction via elimination of everything detected by these tools No -Rosen et al. 2021 https://doi.org/10.3390/insects12010067 Blastx + Blast2GO (for GO annotation) NR, SP, KEGG, COG Yes 90 No Trinity No ESTScan + WEGO (for GO visualization) No -Visser et al. 2018 https://doi.org/10.1186/s12864-018-5015-0 EnTAP Refseq_complete, UniProt, TAIR10 A. thaliana proteome, EggNOG DB Yes 125, 150, 250 No Trinity Yes OrthoFinder + PLAZA DB No -Shah et al. 2019 https://doi.org/10.1186/s12864-019-5756-4 Dammit! + InterProScan + blast Pfam, Rfam, OrthoDB, UniRef90, InterProScan Dbs, NR Yes 300 (maximum) No Trinity + SOAPdenovo-trns + Oases-Velvet Yes BWA and a custom mitochondrial genome for detecting mitochondrial genes No -Oldach et al. 2018 https://doi.org/10.1016/j.margen.2017.12.007 Dammit! + Sma3S (for functional annotation) + WebMGA (for KOG) Pfam, Rfam, UniRef90, OrthoDB, KOG, KEGG (via KAAS) Yes 250 No Trinity Yes None No - - -Key: -NR – NCBI NR -SP – Swiss-Prot -NT – NCBI NT diff --git a/results/2022-1201/notebook/Raghavan-et-al.review.table-s2.csv b/results/2022-1201/notebook/Raghavan-et-al.review.table-s2.csv deleted file mode 100644 index 4fa80eb..0000000 --- a/results/2022-1201/notebook/Raghavan-et-al.review.table-s2.csv +++ /dev/null @@ -1,228 +0,0 @@ -Tool name Link Application Authors DOI Year Citations - -Pre assembly quality control -Bbtools "https://sourceforge.net/projects/bbmap/ -https://jgi.doe.gov/data-and-tools/bbtools/" Multi purpose sequence manipulation Bushnell NA 2014 NA -Bignorm https://git.informatik.uni-kiel.de/axw/Bignorm Sequence filter tool Wedemeyer et al. https://doi.org/10.1186/s12859-017-1724-7 2017 8 -Centrifuge https://github.com/DaehwanKimLab/centrifuge Short read microbial classification tool Kim et al. https://doi.org/10.1101/gr.210641.116 2016 216 -cutadapt https://github.com/marcelm/cutadapt Cleaning short read data (i.e. adapter trimming) Martin https://doi.org/10.14806/ej.17.1.200 2011 14063 -Falco https://github.com/smithlabcode/falco Visualizing quality control for sequencing data De Sena Brandine et al. https://doi.org/10.12688/f1000research.21142.2 2019 22 -fastp https://github.com/OpenGene/fastp Sequencing data cleaning Chen et al. https://doi.org/10.1093/bioinformatics/bty560 2018 2497 -FastQC https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ Visualizing quality control for sequencing data Andrews et al. NA 2012 NA -khmer https://github.com/dib-lab/khmer/ Multi purpose sequence analysis Crusoe et al. https://doi.org/10.12688/f1000research.6924.1 2015 260 -Kraken2 https://github.com/DerrickWood/kraken2 Taxonomic classification of sequencing data Wood et al. https://doi.org/10.1186/s13059-019-1891-0 2019 857 -MultiQC https://multiqc.info/ Visualizing quality control for sequencing data Ewels et al. https://doi.org/10.1093/bioinformatics/btw354 2016 1929 -NeatFreq https://github.com/bioh4x/NeatFreq Data reduction and coverage normalization McCorrison et al. https://doi.org/10.1186/s12859-014-0357-3 2014 14 -Orna https://github.com/SchulzLab/ORNA In silico read normalization Durai and Schulz https://doi.org/10.1038/s41598-019-41502-9 2019 1 -rCorrector https://github.com/mourisl/Rcorrector Read correction for sequencing data Song and Florea https://doi.org/10.1186/s13742-015-0089-y 2015 239 -SortMeRNA https://github.com/biocore/sortmerna Filter out ribosomal RNA from sequencing data Kopylova et al. https://doi.org/10.1093/bioinformatics/bts611 2012 1430 -TrimGalore "https://github.com/FelixKrueger/TrimGalore -https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/" Multi purpose sequence manipulation Krueger NA 2017 NA -Trimmomatic https://github.com/usadellab/Trimmomatic Multi purpose sequence manipulation Bolger et al. https://doi.org/10.1093/bioinformatics/btu170 2014 28167 - -De novo transcriptome assembly -BinPacker https://github.com/macmanes-lab/BINPACKER De novo transcriptome assembler Liu et al. https://doi.org/10.1371/journal.pcbi.1004772 2016 104 -Bridger https://github.com/fmaguire/Bridger_Assembler De novo transcriptome assembler Chang et al. https://doi.org/10.1186/s13059-015-0596-2 2015 254 -DTA-SiST https://github.com/jzbio/DTA-SiST De novo transcriptome assembler Zhao et al. https://doi.org/10.1186/s12859-019-3272-9 2019 3 -IDBA-tran https://github.com/loneknightpy/idba De novo transcriptome assembler Peng et al. https://doi.org/10.1093/bioinformatics/btt219 2013 167 -InGAP–CDG https://sourceforge.net/projects/ingap-cdg/ De novo transcriptome assembler Peng at al. https://doi.org/10.1186/s13059-016-1094-x 2016 19 -IsoTree https://github.com/david-cortes/isotree De novo transcriptome assembler Zhao et al. https://doi.org/10.1109/TCBB.2018.2808350 2018 2 -Oases https://github.com/dzerbino/oases De novo transcriptome assembler Schulz et al. https://doi.org/10.1093/bioinformatics/bts094 2012 1498 -RNA-Bloom https://github.com/bcgsc/RNA-Bloom De novo transcriptome assembler Nip et al. https://doi.org/10.1101/gr.260174.119 2020 4 -rnaSPAdes https://github.com/ablab/spades De novo transcriptome assembler Bushmanova et al. https://doi.org/10.1093/gigascience/giz100 2019 176 -SOAPdenovo https://github.com/aquaskyline/SOAPdenovo-Trans De novo transcriptome assembler Xie et al. https://doi.org/10.1093/bioinformatics/btu077 2014 786 -Trans-AbySS https://github.com/bcgsc/transabyss De novo transcriptome assembler Robertson et al. https://doi.org/10.1038/nmeth.1517 2010 999 -TransLig https://sourceforge.net/projects/transcriptomeassembly/ De novo transcriptome assembler Liu et al. https://doi.org/10.1186/s13059-019-1690-7 2019 16 -Trinity https://github.com/trinityRNA-seq/trinityRNA-seq/wiki De novo transcriptome assembler Grabherr et al. https://doi.org/10.1038/nbt.1883 2011 12578 - -Assembly quality control -Bellerophon Pipeline https://github.com/JesseKerkvliet/Bellerophon Multi purpose assembly quality control suite Kerkvliet et al. https://doi.org/10.1002/ece3.5571 2019 4 -BUSCO https://busco.ezlab.org/ Identification of universal single copy orthologs in sequence assemblies Seppey et al. https://doi.org/10.1007/978-1-4939-9173-0_14 2019 654 -DETONATE https://github.com/deweylab/detonate De novo transcriptome assembly evaluation Li et al. https://doi.org/10.1186/s13059-014-0553-5 2014 236 -DOGMA "https://domainworld-services.uni-muenster.de/dogma/ -https://ebbgit.uni-muenster.de/domainWorld/DOGMA" Identification of conserved protein domains in sequence assemblies Dohmen et al. https://doi.org/10.1093/bioinformatics/btw231 2016 34 -DRAP http://www.sigenae.org/drap/ Assembly pipeline with built in quality control Cabau et al. https://doi.org/10.7717/peerj.2988 2017 66 -EvidentialGene http://arthropods.eugenes.org/EvidentialGene/ De novo transcriptome assembly evaluation Gilbert NA 2013 NA -Pincho https://github.com/RandyOrtiz/Pincho Assembly pipeline with built in quality control Ortiz et al. https:doi.org/10.3390/genes12070953 2021 0 -rnaQUAST https://github.com/ablab/rnaquast De novo transcriptome assembly evaluation Bushmanova et al. https://doi.org/10.1093/bioinformatics/btw218 2016 79 -SeqKit https://github.com/shenwei356/seqkit Multi purpose sequence manipulation Shen et al. https://doi.org/10.1371/journal.pone.0163962 2016 469 -The Oyster River Protocol https://oyster-river-protocol.readthedocs.io/en/latest/index.html Assembly pipeline with built in quality control MacManes https://doi.org/10.7717/peerj.5428 2018 51 -TransPi https://github.com/palmuc/TransPi Assembly pipeline with built in quality control Rivera-Vicéns et al. https://doi.org/10.1101/2021.02.18.431773 2021 2 -TransRate https://github.com/blahah/transrate De novo transcriptome assembly evaluation Smith-Unna et al. https://doi.org/10.1101/gr.196469.115 2016 510 -Trinity Wiki https://github.com/trinityrnaseq/trinityrnaseq/wiki Wiki for de novo transcriptome assembly and evaluation NA NA NA NA - -Alignment and abundance estimation -Bowtie2 https://github.com/BenLangmead/bowtie2 Short read alignment Langmead and Salzberg https://doi.org/10.1038/nmeth.1923 2012 29541 -Kallisto https://github.com/pachterlab/kallisto Short read alignment Nicolas et al. https://doi.org/10.1038/nbt.3519 2016 4444 -RSEM https://github.com/deweylab/RSEM Transcript quantification from RNA-sequencing data Li and Dewey https://doi.org/10.1186/1471-2105-12-323 2011 11312 -Salmon https://github.com/COMBINE-lab/salmon Short read alignment Patro et al. https://doi.org/10.1038/nmeth.4197 2017 3561 -STAR https://github.com/alexdobin/STAR Short read alignment Dobin et al. https://doi.org/10.1093/bioinformatics/bts635 2013 20666 -TPMCalculator https://github.com/ncbi/TPMCalculator Abundance normalization via transcripts per million (TPM) Alvarez et al. https://doi.org/10.1093/bioinformatics/bty896 2019 42 - -Assembly thinning and redundancy reduction -CD-HIT http://weizhongli-lab.org/cd-hit/ Cluster FASTA sequences Li and Godzik https://doi.org/10.1093/bioinformatics/btl158 2006 7004 -Compacta https://github.com/bioCompU/Compacta Cluster FASTA sequences Razo-Mendivil et al. https://doi.org/10.1186/s12864-020-6528-x 2020 0 -Corset https://github.com/Oshlack/Corset Cluster FASTA sequences Davidson and Oshlack https://doi.org/10.1186/s13059-014-0410-6 2014 343 -Grouper https://github.com/COMBINE-lab/grouper Cluster FASTA sequences Malik et al. https://doi.org/10.1093/bioinformatics/bty378 2018 9 -MMseqs2 https://github.com/soedinglab/MMseqs2 Cluster FASTA sequences / multi purpose sequence search suite Mirdita et al. https://doi.org/10.1093/bioinformatics/bty1057 2019 514 -SuperTranscripts https://github.com/Oshlack/Lace Linear representation of the transcriptome Davidson et al. https://doi.org/10.1186/s13059-017-1284-1 2017 59 - -Differential expression analysis -apeglm https://bioconductor.org/packages/release/bioc/html/apeglm.html LFC correction algortihm Zhu et al. https://doi.org/10.1093/bioinformatics/bty895 2019 376 -ashr https://github.com/stephens999/ashr LFC correction algortihm Stephens https://doi.org/10.1093/biostatistics/kxw041 2016 339 -consensusDE https://bioconductor.org/packages/release/bioc/html/consensusDE.html DE analysis Waardenberg https://doi.org/10.18129/B9.bioc.consensusDE 2021 9 -DSeq2 https://bioconductor.org/packages/release/bioc/html/DESeq2.html DE analysis Love et al. https://doi.org/10.1186/s13059-014-0550-8 2014 31571 -edgeR https://bioconductor.org/packages/release/bioc/html/edgeR.html DE analysis Robinson et al. https://doi.org/10.1093/bioinformatics/btp616 2010 22965 -limma https://kasperdanielhansen.github.io/genbioconductor/html/limma.html DE analysis Ritchie et al. https://doi.org/10.1093/nar/gkv007 2015 14566 -MetaCycle https://cran.r-project.org/web/packages/MetaCycle/index.html Time-series RNA-seq analysis Wu et al. https://doi.org/10.1093/bioinformatics/btw405 2016 222 -RUVSeq https://bioconductor.org/packages/release/bioc/html/RUVSeq.html Normalization for RNA-seq data Risso et al. https://doi.org/10.1038/nbt.2931 2014 1104 -SARTools https://github.com/PF2-pasteur-fr/SARTools DE analysis Varet et al. https://doi.org/10.1371/journal.pone.0157022 2016 352 -tximport https://github.com/mikelove/tximport DE analysis preparation Soneson et al. https://doi.org/10.12688/f1000research.7563.2 2016 1660 - -RNA classification -barrnap https://github.com/tseemann/barrnap rRNA classification Seemann NA 2013 NA -CPC2 https://github.com/gao-lab/CPC2_standalone Predicting coding ability of RNA Kang et al. https://doi.org/10.1093/nar/gkx428 2017 422 -FEELnc https://github.com/tderrien/FEELnc Filter lncRNA Wucher et al. https://doi.org/10.1093/nar/gkw1306 2017 204 -Infernal http://eddylab.org/infernal/ rRNA, tRNA, lncRNA classification Nawrocki et al. https://doi.org/10.1093/bioinformatics/btt509 2013 1462 -NCBI RefSeq https://www.ncbi.nlm.nih.gov/refseq/ Non-redundant, manually curated database O’Leary et al. https://doi.org/10.1093/nar/gkv1189 2016 3135 -Rfam http://rfam.xfam.org/ RNA database Kalvari et al. https://doi.org/10.1093/nar/gkaa1047 2021 69 -RNAmmer http://www.cbs.dtu.dk/services/RNAmmer/ Rrna classification Lagesen et al. https://doi.org/10.1093/nar/gkm160 2007 4433 -SILVA https://www.arb-silva.de/ rRNA database Quast et al. https://doi.org/10.1093/nar/gks1219 2013 13058 - -Sequence translation -Borf https://github.com/betsig/borf ORF prediction Signal and T. Kahlke https://doi.org/10.1101/2021.04.12.439551 2021 0 -CodAn https://github.com/pedronachtigall/CodAn ORF prediction Nachtigall et al. https://doi.org/10.1093/bib/bbaa045 2020 5 -EMBOSS-Sixpack https://www.ebi.ac.uk/Tools/st/emboss_sixpack/ Sequence translation Rice et al. https://doi.org/10.1016/s0168-9525(00)02024-2 2002 8513 -esl-translate "http://hmmer.org/ -https://github.com/EddyRivasLab/easel" Sequence translation Finn et al. https://doi.org/10.1093/nar/gkr367 2011 3623 -GeneMarkS-T http://exon.gatech.edu/GeneMark/license_download.cgi ORF prediction NA NA NA NA -ORFfinder https://www.ncbi.nlm.nih.gov/orffinder/ Sequence translation Wheeler et al. https://doi.org/10.1093/nar/gkg033 2003 1044 -PLASS https://github.com/soedinglab/plass Protein level assembler from short reads Steinegger et al. https://doi.org/10.1038/s41592-019-0437-4 2019 85 -Prodigal https://github.com/hyattpd/Prodigal ORF prediction Hyatt et al. https://doi.org/10.1186/1471-2105-11-119 2010 5394 -TransDecoder https://github.com/TransDecoder/TransDecoder ORF prediction NA NA NA NA - -Functional annotation: homology transfer -BLAST "https://blast.ncbi.nlm.nih.gov/Blast.cgi -https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/" Sequence search Altschul et al. https://doi.org/10.1016/S0022-2836(05)80360-2 1990 96505 -Diamond https://github.com/bbuchfink/diamond Protein sequence search Buchfink et al. "https://doi.org/10.1038/nmeth.3176 -https://doi.org/10.1038/s41592-021-01101-x" "2014 -2021" "4557 -47" -FlyBase https://flybase.org/ Species specifc database The FlyBase Consortium https://doi.org/10.1093/nar/22.17.3456 1994 96 -MMseqs2 "https://github.com/soedinglab/MMseqs2 -https://search.mmseqs.com/search" Multi purpose sequence search Steinegger et al. https://doi.org/10.1038/nbt.3988 2017 514 -NCBI NR and NCBI NT https://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/ Protein / nucleotide database NCBI Resource Coordinators https://doi.org/10.1093/nar/gks1189 2013 1974 -NCBI RefSeq "https://www.ncbi.nlm.nih.gov/refseq/ -https://ftp.ncbi.nlm.nih.gov/refseq/release/" Non-redundant, manually curated database O’Leary et al. https://doi.org/10.1093/nar/gkv1189 2016 3135 -PLAZA https://bioinformatics.psb.ugent.be/plaza/ Species specifc database Proost et al. https://doi.org/10.1105/tpc.109.071506 2009 320 -UniProt https://www.uniprot.org/ Protein database The UniProt Consortium https://doi.org/10.1093/nar/gkw1099 2016 3171 -WormBase https://wormbase.org/#012-34-5 Species specifc database Chen et al. https://doi.org/10.1093/nar/gki066 2005 224 - -Functional annotation: sequence feature annotation -CATH-Gene3D https://www.cathdb.info/ Structural domains database Lewis et al. https://doi.org/10.1093/nar/gkx1187 2017 89 -fLPS https://biology.mcgill.ca/faculty/harrison/flps.html Predicting compositional biases Harrison https://doi.org/10.1186/s12859-017-1906-3 2017 30 -HMMER3 "https://www.ebi.ac.uk/Tools/hmmer/ -https://www.ebi.ac.uk/Tools/hmmer/" Sequence profile alignment against sequence databases Mistry et al. https://doi.org/10.1093/nar/gkt263 2013 699 -InterProScan https://github.com/ebi-pf-team/interproscan Protein classification and domain prediction suite Zdobnov and Apweiler https://doi.org/10.1093/bioinformatics/17.9.847 2001 2887 -Pfam http://pfam.xfam.org/ Protein families database Mistry et al. https://doi.org/10.1093/nar/gkaa913 2021 355 -tools at DTU Health Tech https://services.healthtech.dtu.dk/software.php Tool collection NA NA NA NA -tools at EMBL-EBI https://www.ebi.ac.uk/services Tool collection NA NA NA NA - -Functional annotation: Gene ontology and pathway annotation -BLAST2GO https://www.blast2go.com/ Functional annotation suite Conesa et al. https://doi.org/10.1093/bioinformatics/bti610 2005 9903 -BlastKOALA https://www.kegg.jp/blastkoala/ Functional annotation suite Kanehisa et al. https://doi.org/10.1016/j.jmb.2015.11.006 2016 1522 -EggNOG-mapper "https://github.com/eggnogdb/eggnog-mapper -http://eggnog-mapper.embl.de/ -http://eggnog5.embl.de/#/app/home" Functional annotation suite "Jensen et al. -Huerta-Cepas et al." "https://doi.org/10.1093/nar/gkm796 -https://doi.org/10.1093/nar/gky1085" "2007 -2018" "445 -735" -GhostKOALA https://www.kegg.jp/ghostkoala/ Functional annotation suite Kanehisa et al. https://doi.org/10.1016/j.jmb.2015.11.006 2016 1522 -InterProScan https://github.com/ebi-pf-team/interproscan Protein classification and domain prediction suite Zdobnov and Apweiler https://doi.org/10.1093/bioinformatics/17.9.847 2001 2887 -KAAS https://www.genome.jp/kegg/kaas/ Automatic annotation server Moriya et al. https://doi.org/10.1093/nar/gkm321 2007 2928 -KEGG https://www.genome.jp/kegg/ Pathway annotation database Kanehisa et al. https://doi.org/10.1093/nar/gkw1092 2016 4485 -KofamKOALA https://www.genome.jp/tools/kofamkoala/ Functional annotation suite Aramaki et al. https://doi.org/10.1093/bioinformatics/btz859 2020 239 -OMA Browser https://omabrowser.org/oma/home/ Functional annotation webserver "Schneider et al. -Altenhoff et al." "https://doi.org/10.1093/bioinformatics/btm295 -https://doi.org/10.1093/nar/gkaa1007" "2007 -2020" "146 -25" -reactome https://reactome.org/ Pathway annotation database Joshi-Tope et al. https://doi.org/10.1093/nar/gki072 2005 1492 - -Functional annotation: annotation suites -Annocript https://github.com/frankMusacchia/Annocript Functional annotation suite Musacchia et al. https://doi.org/10.1093/bioinformatics/btv106 2015 95 -Dammit "https://github.com/dib-lab/dammit -http://dib-lab.github.io/dammit" Functional annotation suite Scott et al. https://doi.org/10.5281/zenodo.3569831 2016 NA -EggNOG-mapper "https://github.com/eggnogdb/eggnog-mapper -http://eggnog-mapper.embl.de/" Functional annotation suite "Jensen et al. -Huerta-Cepas et al." "https://doi.org/10.1093/nar/gkm796 -https://doi.org/10.1093/nar/gky1085" "2007 -2018" "445 -735" -EnTAP https://github.com/harta55/EnTAP Functional annotation suite Hart et al. https://doi.org/10.1111/1755-0998.13106 2019 31 -FA-nf https://github.com/guigolab/FA-nf/tree/0.3.1 Functional annotation suite Pulido et al. https://doi.org/10.3390/genes12101645 2019 0 -OMA StandAlone https://omabrowser.org/standalone/ Functional annotation suite Altenhoff et al. https://doi.org/10.1101/gr.243212.118 2019 57 -PANNZER2 http://ekhidna2.biocenter.helsinki.fi/sanspanz/ Functional annotation suite Törönen et al. https://doi.org/10.1093/nar/gky350 2018 147 -Sma3s "https://github.com/UPOBioinfo/sma3s -http://www.bioinfocabd.upo.es/web_bioinfo/sma3s" Functional annotation suite Casimiro-Soriguer et al. https://doi.org/10.1002/pmic.201700071 2017 46 -TCW "http://www.agcol.arizona.edu/software/tcw/ -https://github.com/csoderlund/TCW" Functional annotation suite Soderlund et al. https://doi.org/10.1371/journal.pone.0069401 2013 17 -TOA https://github.com/GGFHF/TOA Functional annotation suite Mora-Márquez et al. https://doi.org/10.1111/1755-0998.13285 2020 2 -transXpress "https://github.com/transXpress/transXpress-nextflow -https://github.com/transXpress/transXpress-snakemake" Functional annotation suite NA NA NA NA -TRAPID 2.0 http://bioinformatics.psb.ugent.be/trapid_02/ Functional annotation suite Bucchini et al. https://doi.org/10.1093/nar/gkab565 2021 1 -Trinotate https://github.com/Trinotate Functional annotation suite Bryant et al. https://doi.org/10.1016/j.celrep.2016.12.063 2017 438 -WebMGA http://weizhong-lab.ucsd.edu/webMGA/server/ Functional annotation webserver Wu et al. https://doi.org/10.1186/1471-2164-12-444 2011 519 - -Comparing transcriptome assemblies -BUSCO https://busco.ezlab.org/ Identification of universal single copy orthologs in sequence assemblies Seppey et al. https://doi.org/10.1007/978-1-4939-9173-0_14 2019 654 -FAMSA http://sun.aei.polsl.pl/REFRESH/famsa Multiple sequence alignment tool Deorowicz et al. https://doi.org/10.1038/srep33964 2016 49 -JustOrthologs https://github.com/ridgelab/JustOrthologs Ortholog identification Miller et al. https://doi.org/10.1093/bioinformatics/bty669 2019 10 -MAFFT https://mafft.cbrc.jp/alignment/server Multiple sequence alignment tool Katoh et al. https://doi.org/10.1093/nar/gkf436 2002 10671 -OMA StandAlone https://omabrowser.org/standalone/ Ortholog database Altenhoff et al. https://doi.org/10.1101/gr.243212.118 2019 57 -OrthoFinder https://github.com/davidemms/OrthoFinder Ortholog identification Emms and Kelly https://doi.org/10.1186/s13059-019-1832-y 2019 781 -RaxML https://raxml-ng.vital-it.ch/ Phylogenetic analysis Stamatakis https://doi.org/10.1093/bioinformatics/btu033 2014 20498 - -Workflow managers -CWL https://www.commonwl.org/ Workflow manager language NA NA NA NA -Cromwell https://github.com/broadinstitute/cromwell Workflow Management System Voss et al. https://doi.org/10.7490/f1000research.1114634.1 2017 44 -Galaxy "https://galaxyproject.org/ -https://usegalaxy.org/" Web-based bioinformatic analysis platform Giardine et al. https://doi.org/10.1101/gr.4086505 2005 2317 -GenePattern "https://www.genepattern.org/# -https://cloud.genepattern.org/gp/pages/login.jsf -https://github.com/genepattern" Web-based bioinformatic analysis platform Reich, Liefeld, Gould et al. https://doi.org/10.1038/ng0506-500 2006 1926 -miniwdl https://github.com/chanzuckerberg/miniwdl Workflow Description Language NA NA 2019 NA -Nextflow https://www.nextflow.io/ Language NA NA NA NA -Snakemake https://snakemake.github.io/ Language NA NA NA NA -Unipro UGENE https://ugene.net/ GUI workflow manager and integrated analysis tools Okonechnikov et al. https://doi.org/10.1093/bioinformatics/bts091 2012 1691 -WDL https://github.com/openwdl/wdl Workflow Description Language NA NA 2015 NA - -Computational and programmatic considerations -Amazon Web Services https://aws.amazon.com/health/ On-demand cloud computing provider NA NA NA NA -Bash https://www.gnu.org/software/bash/ Command language NA NA NA NA -Bioconductor http://bioconductor.org/ Tool repository for R Gentleman et al. https://doi.org/10.1186/gb-2004-5-10-r80 2004 12722 -Google Cloud Life Sciences https://cloud.google.com/life-sciences On-demand cloud computing provider NA NA NA NA -Linux https://www.linux.org/ Operating system NA NA NA NA -Microsoft Azure https://azure.microsoft.com/en-us/solutions/high-performance-computing/health-and-life-sciences/ On-demand cloud computing provider NA NA NA NA -Python https://www.python.org/ Programming language NA NA NA NA -R https://www.r-project.org/ Programming language NA NA NA NA -Ubuntu https://ubuntu.com/ Linux distribution NA NA NA NA -Windows Subsystem for Linux https://docs.microsoft.com/en-us/windows/wsl/about Compatibility layer NA NA NA NA - -Tool management -Bioconda https://bioconda.github.io/ Package manager for bioinformatic software written in python Grüning et al. https://doi.org/10.1038/s41592-018-0046-7 2018 468 -Biostars https://www.biostars.org/ Bioinformatic online communiy Parnell et al. https://doi.org/10.1371/journal.pcbi.1002216 2011 95 -Conda https://docs.conda.io/en/latest/ Package manager for python NA NA NA NA -Docker https://www.docker.com/ Software management tool NA NA NA NA -GitHub https://github.com/ Host for software development and version control NA NA NA NA -GitLab https://gitlab.com/ Git repository manager NA NA NA NA -Singularity https://sylabs.io/singularity/ Software management tool NA NA NA NA -SourceForge https://sourceforge.net/ Host for software management NA NA NA NA - -What to annotate and where to publish -Digital Object Identifiers https://www.doi.org/ Document identification NA NA NA NA -figshare https://figshare.com/ Research data dissemination portal NA NA NA NA -NCBI Sequence Read Archive https://www.ncbi.nlm.nih.gov/sra Database for sequencing reads Leinonen et al. https://doi.org/10.1093/nar/gkq1019 2011 1664 -NCBI Transcriptome Shotgun Assembly Sequence Database https://www.ncbi.nlm.nih.gov/genbank/tsa/ Database for assembled transcripts NA NA NA NA -Zenodo https://zenodo.org/ Research data dissemination portal NA NA NA NA diff --git a/results/2022-1201/notebook/Rhind-et-al.comparative-functional-genomics.pdf b/results/2022-1201/notebook/Rhind-et-al.comparative-functional-genomics.pdf deleted file mode 100644 index 94ab2ec..0000000 Binary files a/results/2022-1201/notebook/Rhind-et-al.comparative-functional-genomics.pdf and /dev/null differ diff --git a/results/2022-1201/notebook/Rhind-et-al.comparative-functional-genomics.supp-text.doc b/results/2022-1201/notebook/Rhind-et-al.comparative-functional-genomics.supp-text.doc deleted file mode 100644 index 17aab73..0000000 Binary files a/results/2022-1201/notebook/Rhind-et-al.comparative-functional-genomics.supp-text.doc and /dev/null differ diff --git a/results/2022-1201/notebook/Rhind-et-al.comparative-functional-genomics.supp-text.pdf b/results/2022-1201/notebook/Rhind-et-al.comparative-functional-genomics.supp-text.pdf deleted file mode 100644 index 9d8ef7a..0000000 Binary files a/results/2022-1201/notebook/Rhind-et-al.comparative-functional-genomics.supp-text.pdf and /dev/null differ diff --git a/results/2022-1201/notebook/bioinformatics-stack-exchange.de-novo-transcriptome-assembly-methods.pdf b/results/2022-1201/notebook/bioinformatics-stack-exchange.de-novo-transcriptome-assembly-methods.pdf deleted file mode 100644 index 0e0768f..0000000 Binary files a/results/2022-1201/notebook/bioinformatics-stack-exchange.de-novo-transcriptome-assembly-methods.pdf and /dev/null differ diff --git a/results/2022-1201/scratch.sh b/results/2022-1201/scratch.sh deleted file mode 100644 index 3b71aa6..0000000 --- a/results/2022-1201/scratch.sh +++ /dev/null @@ -1,59 +0,0 @@ -#!/bin/bash -#DONTRUN - -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -left_1="${1}" -left_2="${2}" -right_1="${3}" -right_2="${4}" -out="${5}" - -# module load Singularity/3.5.3 - -parallel --header : --colsep " " -k -j 1 echo \ - singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/Trinity.sif \ - Trinity \ - --verbose \ - --max_memory {j_mem} \ - --CPU {j_cor} \ - --SS_lib_type FR \ - --left {left_1},{left_2} \ - --right {right_1},{right_2} \ - --jaccard_clip \ - --output {t_out} \ - --full_cleanup \ - --min_kmer_cov 1 \ - --min_iso_ratio 0.05 \ - --min_glue 2 \ - --glue_factor 0.05 \ - --max_reads_per_graph 2000 \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200 \ -::: d_exp "$(pwd)" \ -::: d_scr "/loc/scratch" \ -::: j_mem "50G" \ -::: j_cor "${SLURM_CPUS_ON_NODE}" \ -::: left_1 "${left_1}" \ -:::+ left_2 "${left_2}" \ -:::+ right_1 "${right_1}" \ -:::+ right_2 "${right_2}" \ -:::+ t_out "${out}" - -# 2022-1212 -# This seems to be an important conversation for how we can/should go about annotating novel transcripts... -# https://groups.google.com/g/pasapipeline-users/c/ka_Ue6WLogE/m/0cdqnSrnAQAJ diff --git a/results/2022-1201/test_PASA_individual-run_stringent-alignment-overlap.md b/results/2022-1201/test_PASA_individual-run_stringent-alignment-overlap.md deleted file mode 100644 index af175a3..0000000 --- a/results/2022-1201/test_PASA_individual-run_stringent-alignment-overlap.md +++ /dev/null @@ -1,1453 +0,0 @@ - -# `test_PASA_individual-run_stringent-alignment-overlap.md` - -
-Table of contents - - -1. [Set up arrays for genome-free and -guided `.fasta`s](#set-up-arrays-for-genome-free-and--guided-fastas) - 1. [Run an `echo` test for the arrays](#run-an-echo-test-for-the-arrays) -1. [Important "precursor" and main steps for calling `PASA`](#important-precursor-and-main-steps-for-calling-pasa) - 1. [Breakdown of previous steps I performed leading up to the running of `PASA`](#breakdown-of-previous-steps-i-performed-leading-up-to-the-running-of-pasa) -1. [Run a test call to `Singularity` `PASA`](#run-a-test-call-to-singularity-pasa) - 1. [Perform the "precursor" work](#perform-the-precursor-work) - 1. [Set up directory for the test call and associated precursor work](#set-up-directory-for-the-test-call-and-associated-precursor-work) - 1. [Set up the concatenation of `.fasta`s from genome-free and -guided `Trinity` runs](#set-up-the-concatenation-of-fastas-from-genome-free-and--guided-trinity-runs) - 1. [Create a `.txt` file for `Trinity` genome-free transcript accessions](#create-a-txt-file-for-trinity-genome-free-transcript-accessions) - 1. [Run an `echo` test](#run-an-echo-test) - 1. [Check the results of the `echo` test](#check-the-results-of-the-echo-test) - 1. [Run the command](#run-the-command) - 1. [Clean the transcript sequences for the test call](#clean-the-transcript-sequences-for-the-test-call) - 1. [Run an `echo` test](#run-an-echo-test-1) - 1. [Check the results of the `echo` test](#check-the-results-of-the-echo-test-1) - 1. [Run the command](#run-the-command-1) - 1. [Set up an example `.config` file for the sample call to `PASA`](#set-up-an-example-config-file-for-the-sample-call-to-pasa) - 1. [Run `Launch_PASA_pipeline.pl`](#run-launch_pasa_pipelinepl) - 1. [Perform an `echo` test](#perform-an-echo-test) - 1. [Results of `echo` test](#results-of-echo-test) - 1. [Run the command](#run-the-command-2) - 1. [Assessing the completion of `Launch_PASA_pipeline.pl`](#assessing-the-completion-of-launch_pasa_pipelinepl) - 1. [Previous shell script for running `Singularity` `PASA` `Launch_PASA_pipeline.pl`](#previous-shell-script-for-running-singularity-pasa-launch_pasa_pipelinepl) - 1. [Options for `Launch_PASA_pipeline.pl`](#options-for-launch_pasa_pipelinepl) - 1. [Run `build_comprehensive_transcriptome.dbi`](#run-build_comprehensive_transcriptomedbi) - 1. [What are the options/arguments for `build_comprehensive_transcriptome.dbi`?](#what-are-the-optionsarguments-for-build_comprehensive_transcriptomedbi) - 1. [On the meaning of the parameters, using this script, etc.](#on-the-meaning-of-the-parameters-using-this-script-etc) - 1. [Questions for Brian Haas regarding `build_comprehensive_transcriptome.dbi` and `PASA` in general](#questions-for-brian-haas-regarding-build_comprehensive_transcriptomedbi-and-pasa-in-general) - 1. [Question #1](#question-1) - 1. [Text by me](#text-by-me) - 1. [Realization](#realization) - 1. [Question #2: Question about small and/or microbial genomes and `--trans_gtf` \(in `Launch_PASA_pipeline.pl`\)](#question-2-question-about-small-andor-microbial-genomes-and---trans_gtf-in-launch_pasa_pipelinepl) - 1. [Text by me](#text-by-me-1) - 1. [Response from Brian](#response-from-brian) - 1. [Follow-up from me](#follow-up-from-me) - 1. [Follow-up response from Brian](#follow-up-response-from-brian) - 1. [On running `build_comprehensive_transcriptome.dbi`](#on-running-build_comprehensive_transcriptomedbi) -1. [Miscellaneous](#miscellaneous) - - -
-
- - - -## Set up arrays for genome-free and -guided `.fasta`s -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 6 and corresponding defaults - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -Trinity_env -ml Singularity - - -# Create an array of files of interest, including relative paths ------------- -# "Partially processed" genome-guided .fastas ------------ -unset GG_proc -typeset -a GG_proc -while IFS=" " read -r -d $'\0'; do - GG_proc+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_proc[@]}" - -GF_proc="files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_proc -typeset -A T_proc -for i in "${GG_proc[@]}"; do - echo "Working with ${i}..." - T_proc["${i}"]+="${GF_proc}" - echo "" -done -# echoTest "${!T_proc[@]}" -# echoTest "${T_proc[@]}" - - -# "Fully processed" genome-guided .fastas ---------------- -unset GG_full -typeset -a GG_full -while IFS=" " read -r -d $'\0'; do - GG_full+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-full" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_full[@]}" - -GF_full="files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_full -typeset -A T_full -for i in "${GG_full[@]}"; do - echo "Working with ${i}..." - T_full["${i}"]+="${GF_full}" - echo "" -done -# echoTest "${!T_full[@]}" -# echoTest "${T_full[@]}" - - -# "Unprocessed" genome-guided .fastas -------------------- -unset GG_un -typeset -a GG_un -while IFS=" " read -r -d $'\0'; do - GG_un+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_unprocessed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_un[@]}" - -GF_un="files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta" -unset T_un -typeset -A T_un -for i in "${GG_un[@]}"; do - echo "Working with ${i}..." - T_un["${i}"]+="${GF_un}" - echo "" -done -# echoTest "${!T_un[@]}" -# echoTest "${T_un[@]}" - -#IMPORTANT stackoverflow.com/questions/29161323/how-to-keep-associative-array-order -``` - -
-What are the key-value contents of the different associative arrays? - -```bash -echo "# T_proc keys" && \ -echoTest "${!T_proc[@]}" && \ -echo "" && \ -echo "# T_proc values" && \ -echoTest "${T_proc[@]}" && \ -echo "" && \ -echo "" && \ -echo "# T_full keys" && \ -echoTest "${!T_full[@]}" && \ -echo "" && \ -echo "# T_full values" && \ -echoTest "${T_full[@]}" && \ -echo "" && \ -echo "" && \ -echo "# T_full keys" && \ -echoTest "${!T_un[@]}" && \ -echo "" && \ -echo "# T_full values" && \ -echoTest "${T_un[@]}" && \ -echo "" && \ -echo "" -``` - -Results of echo tests printed to terminal - -```txt -# T_proc keys -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta - -# T_proc values -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta - - -# T_full keys -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta - -# T_full values -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - - -# T_full keys -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta - -# T_full values -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -``` -
-
- - -### Run an `echo` test for the arrays -```bash -# How do the assignments look? ----------------------------------------------- -message=""" -# 'Partially processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_proc[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_proc[@]}") - - -# 'Fully processed' genome-guided .fastas ---------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_full[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_full[@]}") - - -# 'Unprocessed' genome-guided .fastas -------------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_un[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_un[@]}") -""" -echo "${message}" -``` - -
-Results of message test - -```txt -# 'Partially processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta - -#+ Values (genome-free Trinity files) -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta - - -# 'Fully processed' genome-guided .fastas ---------------- -#+ Keys (genome-guided Trinity files) -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta - -#+ Values (genome-free Trinity files) -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - - -# 'Unprocessed' genome-guided .fastas -------------------- -#+ Keys (genome-guided Trinity files) -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta - -#+ Values (genome-free Trinity files) -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -``` -
-
-
- - -## Important "precursor" and main steps for calling `PASA` -*...culled from the below breakdown* -1. Concatenate the `Trinity.fasta` and `Trinity.GG.fasta` files into a single `transcripts.fasta` file -2. Create a file containing the list of transcript accessions that correspond to the `Trinity` *de novo* assembly (full *de novo*, not genome-guided) -3. Clean the transcript sequences (`PASA_alignment_assembly`) -4. Write a configuration file -5. Run `Launch_PASA_pipeline.pl` -6. Run [`build_comprehensive_transcriptome.dbi`](https://github.com/PASApipeline/PASApipeline/wiki/PASA_comprehensive_db#build-a-comprehensive-transcriptome-database-using-genome-guided-and-de-novo-rna-seq-assembly) `#NOTE` *Haven't done this yet* - - -### Breakdown of previous steps I performed leading up to the running of `PASA` -- [Working through the first few steps of `PASA` Wiki (2022-1124)](../2022-1101/work-Trinity-2.md#working-through-the-first-few-steps-of-pasa-wiki-2022-1124) - + `A` - * Concatenate `Trinity.fasta` and `Trinity.GG.fasta` files into a single `transcripts.fasta` - * `cat Trinity.fasta Trinity.GG.fasta > transcripts.fasta` - + `B` - * Create a file containing the list of transcript accessions that correspond to the `Trinity` genome-free assembly - * `singularity run ~/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl` - + `C` - * Clean the transcript sequences - * `singularity run ~/singularity-docker-etc/PASA.sif ${PASAHOME}/bin/seqclean` -- [Documentation, details for `PASA`'s `Launch_PASA_pipeline.pl`, including `*.config`](../2022-1101/work-Trinity-2.md#documentation-details-for-pasas-launch_pasa_pipelinepl-including-config) - + `D` - * Attempt to write an `alignAssembly` configuration file - * `#IMPORTANT` `#NOTE` I also need to write an `annotationCompare` configuration file too - - I neglected to do this in my previous work - - ...just as I neglected to run the final step of PASA, which is described in bullet #4 [here](https://github.com/PASApipeline/PASApipeline/wiki/PASA_comprehensive_db) - + `${PASA_HOME}/scripts/build_comprehensive_transcriptome.dbi` - + `#TODO` Check on what `${PASA_HOME}` is in the example here -- [Attempt to call `Launch_PASA_pipeline.pl` (2022-1124)](../2022-1101/work-Trinity-2.md#attempt-to-call-launch_pasa_pipelinepl-2022-1124) -- [Attempt to call `Launch_PASA_pipeline.pl` following Brian Haas' advice (2022-1125)](../2022-1101/work-Trinity-2.md#attempt-to-call-launch_pasa_pipelinepl-following-brian-haas-advice-2022-1125) -- [Attempt to continue `Launch_PASA_pipeline.pl` following Brian Haas' advice (2022-1126)](../2022-1101/work-Trinity-2.md#attempt-to-continue-launch_pasa_pipelinepl-following-brian-haas-advice-2022-1126) -
-
- - -## Run a test call to `Singularity` `PASA` - -### Perform the "precursor" work - -#### Set up directory for the test call and associated precursor work -```bash -#!/bin/bash -#DONTRUN #CONTINUE - - -# Derive names for the subdirectories, "${sub}" ------------------------------ -#+ ...i.e., the experiment directories within files_PASA_test-run -#+ -#+ Can derive the directory names from the keys rather than the values - -# Extract the value using "$(echo "${!T_full[@]}" | cut -d ' ' -f 3)" as the -#+ key -echo "${T_full["$(echo "${!T_full[@]}" | cut -d ' ' -f 3)"]}" -# files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - -# #DONE Get these piped commands into a function -# # unix.stackexchange.com/questions/550235/print-last-n-characters-from-all-lines-in-a-file-using-cut -# typeset sub=$(\ -# echo "${!T_full[@]}" \ -# | cut -d ' ' -f 3 \ -# | cut -d '/' -f 3- \ -# | rev \ -# | cut -b 18- \ -# | rev \ -# ) -# echo "${sub}" - -name_tx_db() { - # #TODO Description of function - # - # :param 1: associate array "keys" - # :param 2: number of key to work with - echo "${1}" \ - | cut -d ' ' -f "${2}" \ - | cut -d '/' -f 3- \ - | rev \ - | cut -b 18- \ - | rev -} -# name_tx_db "${!T_full[*]}" 1 -# name_tx_db "${!T_full[*]}" 2 -# name_tx_db "${!T_full[*]}" 3 -# -# name_tx_db "${!T_proc[*]}" 1 -# name_tx_db "${!T_proc[*]}" 2 -# name_tx_db "${!T_proc[*]}" 3 -# -# name_tx_db "${!T_un[*]}" 1 -# name_tx_db "${!T_un[*]}" 2 -# name_tx_db "${!T_un[*]}" 3 -# #NOTE It works! - - -# Make the subdirectory for the test -sub="$(name_tx_db "${!T_full[*]}" 3)" -# # echo "${sub}" -# trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -mkdir -p "files_PASA_test-run/${sub}" -# mkdir: created directory 'files_PASA_test-run' -# mkdir: created directory 'files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd' -``` - - -#### Set up the concatenation of `.fasta`s from genome-free and -guided `Trinity` runs -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -., "$(pwd)/files_PASA_test-run/${sub}" -# total 80K -# drwxrws--- 2 kalavatt 0 Dec 10 13:29 ./ -# drwxrws--- 3 kalavatt 85 Dec 10 13:29 ../ - -get_element() { - # #TODO Description of function - # - # :param 1: associate array "keys" - # :param 2: number of key to work with - echo "${1}" \ - | cut -d ' ' -f "${2}" -} -get_element "${!T_full[*]}" 3 # Key (genome-guided Trinity) -# files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -get_element "${T_full[*]}" 3 # Value (genome-free Trinity) -# files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - -., "$(get_element "${!T_full[*]}" 3)" -# -rw-r--r-- 1 kalavatt 17M Dec 8 18:43 files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -., "$(get_element "${T_full[*]}" 3)" -# -rw-r--r-- 1 kalavatt 12M Dec 9 15:44 files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - -# cat Trinity.fasta Trinity.GG.fasta > transcripts.fasta -cat "$(get_element "${T_full[*]}" 3)" "$(get_element "${!T_full[*]}" 3)" \ - > "files_PASA_test-run/${sub}/${sub}.transcripts.fasta" -., "files_PASA_test-run/${sub}/${sub}.transcripts.fasta" -# -rw-rw---- 1 kalavatt 28M Dec 10 13:46 files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta - -#NOTE 1/2 I could perhaps automate this with a nested for loop where i is -#NOTE 2/2 T_XXXX and j is 1 2 3 -``` - - -#### Create a `.txt` file for `Trinity` genome-free transcript accessions - -##### Run an `echo` test -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -genome_free_fasta="$(get_element "${T_full[*]}" 3)" -genome_free_accessions="files_PASA_test-run/${sub}/$(basename "${genome_free_fasta}" .fasta).accessions" -# echo "${genome_free_fasta}" -# echo "${genome_free_accessions}" - -export PASAHOME="/usr/local/src/PASApipeline" -parallel --header : --colsep " " -k -j 1 echo \ -"singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - \< {genome_free_fasta} \ - \> {genome_free_accessions}" \ -::: d_exp "$(pwd)" \ -::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \ -::: genome_free_fasta "$(get_element "${T_full[*]}" 3)" \ -:::+ genome_free_accessions "files_PASA_test-run/${sub}/$(basename "${genome_free_fasta}" .fasta).accessions" -``` - - -##### Check the results of the `echo` test -How does it look? -```txt -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl < files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions -``` - -Cleaned up for readability -```txt -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl - < files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - > files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions -``` - - -##### Run the command -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -export PASAHOME="/usr/local/src/PASApipeline" -parallel --header : --colsep " " -k -j 1 \ -'singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - < {genome_free_fasta} \ - > {genome_free_accessions}' \ -::: d_exp "$(pwd)" \ -::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \ -::: genome_free_fasta "$(get_element "${T_full[*]}" 3)" \ -:::+ genome_free_accessions "files_PASA_test-run/${sub}/$(basename "${genome_free_fasta}" .fasta).accessions" - -., "${genome_free_accessions}" -# -rw-rw---- 1 kalavatt 400K Dec 10 14:17 files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions -``` - - -#### Clean the transcript sequences for the test call - -##### Run an `echo` test -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -parallel --header : --colsep " " -k -j 1 echo \ -"singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ -::: d_exp "$(pwd)" \ -::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \ -::: genome_combined "files_PASA_test-run/${sub}/${sub}.transcripts.fasta" -``` - - -##### Check the results of the `echo` test -How does it look? -```txt -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/bin/seqclean files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta -``` - -Cleaned up -```txt -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/bin/seqclean files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta -``` - - -##### Run the command -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd "files_PASA_test-run/${sub}" - -parallel --header : --colsep " " -k -j 1 \ -'singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}' \ -::: d_exp "$(pwd)" \ -::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \ -::: genome_combined "${sub}.transcripts.fasta" - -cd - -# pwd -# # /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 -``` - -
-Results of seqclean printed to terminal - -```txt -seqclean running options: -seqclean trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta - Standard log file: seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log - Error log file: err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log - Using 1 CPUs for cleaning --= Rebuilding trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta cdb index =- - Launching actual cleaning process: - psx -p 1 -n 1000 -i trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta -d cleaning -C '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta:ANLMS100:::11:0' -c '/usr/local/src/PASApipeline/bin/seqclean.psx' -Collecting cleaning reports - -************************************************** -Sequences analyzed: 31067 ------------------------------------ - valid: 31066 (2881 trimmed) - trashed: 1 -************************************************** -----= Trashing summary =------ - by 'dust': 1 ------------------------------- -Output file containing only valid and trimmed sequences: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean -For trimming and trashing details see cleaning report : trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --------------------------------------------------- -seqclean (trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta) finished on machine - in /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd, without a detectable error. -``` -
-
- - -#### Set up an example `.config` file for the sample call to `PASA` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -if [[ -f "./files_PASA_test-run/${sub}/${sub}.align_assembly.config" ]]; then - rm "./files_PASA_test-run/${sub}/${sub}.align_assembly.config" -fi - -cat << align_assembly > "./files_PASA_test-run/${sub}/${sub}.align_assembly.config" -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -# DATABASE=/exact/path/to/your/working/directory/sample_mydb.pasa.sqlite -DATABASE=/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/${sub}/${sub}.pasa.sqlite - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 -align_assembly -# vi "./files_PASA_test-run/${sub}/${sub}.align_assembly.config" # :q -``` - - -### Run `Launch_PASA_pipeline.pl` - -#### Perform an `echo` test -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -export PASAHOME="/usr/local/src/PASApipeline" -parallel --header : --colsep " " -k -j 1 echo \ - 'singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/Launch_PASA_pipeline.pl \ - --CPU {j_cor} \ - --config {align_assembly_config} \ - --create \ - --replace \ - --genome {genome} \ - --MAX_INTRON_LENGTH 1002 \ - --transcripts {transcripts_clean} \ - -T \ - -u {transcripts} \ - --TDN {accessions} \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1\> >(tee -a stdout.log.txt) \ - 2\> >(tee -a stderr.log.txt >&2)' \ -::: d_exp "$(pwd)" \ -::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \ -::: j_cor "${SLURM_CPUS_ON_NODE}" \ -::: align_assembly_config "./files_PASA_test-run/${sub}/${sub}.align_assembly.config" \ -::: genome "${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ -::: transcripts_clean "files_PASA_test-run/${sub}/${sub}.transcripts.fasta.clean" \ -::: transcripts "files_PASA_test-run/${sub}/${sub}.transcripts.fasta" \ -::: accessions "files_PASA_test-run/${sub}/$(basename "${genome_free_fasta}" .fasta).accessions" -``` - - -##### Results of `echo` test -
-Click to view - -How does it look? -```txt -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl --CPU 6 --config ./files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.align_assembly.config --create --replace --genome /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --MAX_INTRON_LENGTH 1002 --transcripts files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean -T -u files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta --TDN files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions tdn.accs --transcribed_is_aligned_orient --stringent_alignment_overlap 30.0 --ALIGNERS blat,gmap,minimap2 1> /dev/fd/63 2> /dev/fd/62 -``` - -Cleaned up -```txt -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl - --CPU 6 - --config ./files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.align_assembly.config - --create - --replace - --genome /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - --MAX_INTRON_LENGTH 1002 - --transcripts files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean - -T - -u files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta - --TDN files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - --transcribed_is_aligned_orient - --stringent_alignment_overlap 30.0 - --ALIGNERS blat,gmap,minimap2 - 1> /dev/fd/63 - 2> /dev/fd/62 -``` -
-
- - -#### Run the command -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd "files_PASA_test-run/${sub}" || echo "cd'ing failed; check on this" - -export PASAHOME="/usr/local/src/PASApipeline" -singularity run \ - --bind "${HOME}" \ - --bind "$(pwd)" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/Launch_PASA_pipeline.pl \ - --CPU "${SLURM_CPUS_ON_NODE}" \ - -c "${sub}.align_assembly.config" \ - -C \ - -R \ - -g "${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "${sub}.transcripts.fasta.clean" \ - -T \ - -u "${sub}.transcripts.fasta" \ - --TDN "$(basename "${genome_free_fasta}" .fasta).accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - > >(tee -a stdout.log.txt) \ - 2> >(tee -a stderr.log.txt >&2) - -#TODO 1/2 For some reasong, this does not work: -#TODO 2/2 --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \ - -# Performed the commands below: /loc/scratch is present within the container; -#+ try again; first, rename stderr and stdout files so that they're not over- -#+ written -mv stderr.log.txt stderr.log.1.txt -mv stdout.log.txt stdout.log.1.txt - -# Call Launch_PASA_pipeline.pl again... and it failed again; what is the -#+ specific error? (See below) - -#IMPORTANT 1/2 It seems that I need to bind "/loc/scratch/5495869" instead of -#IMPORTANT 2/2 "/loc/scratch" -echo "${SLURM_JOB_ID}" -# 5495869 -# Do --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" - -mv stderr.log.txt stderr.log.2.txt -mv stdout.log.txt stdout.log.2.txt - -#CORRECT -singularity run \ - --bind "${HOME}" \ - --bind "$(pwd)" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/Launch_PASA_pipeline.pl \ - --CPU "${SLURM_CPUS_ON_NODE}" \ - -c "${sub}.align_assembly.config" \ - -C \ - -R \ - -g "${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "${sub}.transcripts.fasta.clean" \ - -T \ - -u "${sub}.transcripts.fasta" \ - --TDN "$(basename "${genome_free_fasta}" .fasta).accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - > >(tee -a stdout.log.txt) \ - 2> >(tee -a stderr.log.txt >&2) -# It seems to be working... - -#IMPORTANT Slurm Environmental Variables: hpcc.umd.edu/hpcc/help/slurmenv.html -``` - -
-Troubleshooting the /loc/scratch errors by performing shell command within and outside the container (edited for readability) - -```txt -❯ singularity shell \ - --bind "${HOME}" \ - --bind "$(pwd)" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \ - ~/singularity-docker-etc/PASA.sif -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd, may not be available - -Singularity> cd /loc/scratch - -Singularity> ls -lhaFG -total 0 -drwxrws--- 2 root 0 Oct 2 2021 ./ -drwxr-xr-x 3 kalavatt 60 Dec 11 06:17 ../ - -Singularity> cd / - -Singularity> ls -lhaFG -total 172K -drwxr-xr-x 1 kalavatt 100 Dec 11 06:17 ./ -drwxr-xr-x 1 kalavatt 100 Dec 11 06:17 ../ -lrwxrwxrwx 1 root 27 Nov 23 12:12 .exec -> .singularity.d/actions/exec* -lrwxrwxrwx 1 root 26 Nov 23 12:12 .run -> .singularity.d/actions/run* -lrwxrwxrwx 1 root 28 Nov 23 12:12 .shell -> .singularity.d/actions/shell* -drwxr-xr-x 5 root 127 Nov 23 12:12 .singularity.d/ -lrwxrwxrwx 1 root 27 Nov 23 12:12 .test -> .singularity.d/actions/test* -lrwxrwxrwx 1 root 7 Jul 23 2021 bin -> usr/bin/ -drwxr-xr-x 2 root 3 Apr 15 2020 boot/ -drwxr-xr-x 18 root 4.2K Nov 12 19:17 dev/ -lrwxrwxrwx 1 root 36 Nov 23 12:12 environment -> .singularity.d/env/90-environment.sh* -drwxr-xr-x 53 root 1.8K Aug 6 2021 etc/ -drwxr-xr-x 3 kalavatt 60 Dec 11 06:17 fh/ -drwxr-xr-x 1 kalavatt 60 Dec 11 06:17 home/ -lrwxrwxrwx 1 root 7 Jul 23 2021 lib -> usr/lib/ -lrwxrwxrwx 1 root 9 Jul 23 2021 lib32 -> usr/lib32/ -lrwxrwxrwx 1 root 9 Jul 23 2021 lib64 -> usr/lib64/ -lrwxrwxrwx 1 root 10 Jul 23 2021 libx32 -> usr/libx32/ -drwxr-xr-x 3 kalavatt 60 Dec 11 06:17 loc/ -drwxr-xr-x 2 root 3 Jul 23 2021 media/ -drwxr-xr-x 2 root 3 Jul 23 2021 mnt/ -drwxr-xr-x 2 root 3 Jul 23 2021 opt/ -dr-xr-xr-x 445 root 0 Nov 9 07:00 proc/ -drwx------ 3 root 90 Feb 3 2022 root/ -drwxr-xr-x 8 root 124 Aug 6 2021 run/ -lrwxrwxrwx 1 root 8 Jul 23 2021 sbin -> usr/sbin/ -lrwxrwxrwx 1 root 24 Nov 23 12:12 singularity -> .singularity.d/runscript* -drwxr-xr-x 2 root 3 Jul 23 2021 srv/ -dr-xr-xr-x 13 root 0 Nov 9 07:00 sys/ -drwxrwxrwt 32 root 168K Dec 11 06:17 tmp/ -drwxr-xr-x 14 root 241 Aug 6 2021 usr/ -drwxr-xr-x 11 root 172 Jul 23 2021 var/ - -Singularity> exit - -❯ cd /fh/scratch/delete30/tsukiyama_t - -❯ ., -total 512 -drwxrws--- 2 root 0 Oct 2 2021 ./ -drwxr-xr-x 240 root 238 Nov 18 11:36 ../ - -❯ - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -❯ touch /fh/scratch/delete30/tsukiyama_t/test.txt - -❯ cd /fh/scratch/delete30/tsukiyama_t - -❯ ., -total 1.0K -drwxrws--- 2 root 1 Dec 11 06:10 ./ -drwxr-xr-x 240 root 238 Nov 18 11:36 ../ --rw-rw---- 1 kalavatt 0 Dec 11 06:22 test.txt - -❯ - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -❯ singularity shell \ - --bind "${HOME}" \ - --bind "$(pwd)" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \ - ~/singularity-docker-etc/PASA.sif -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd, may not be available - -Singularity> ls -lhaFG /loc/scratch -total 512 -drwxrws--- 2 root 1 Dec 11 06:10 ./ -drwxr-xr-x 3 kalavatt 60 Dec 11 06:23 ../ --rw-rw---- 1 kalavatt 0 Dec 11 06:22 test.txt - -Singularity> exit -``` -
-
- -
-What is the specific error (edited for readability)? - -```txt -It appears that some assemblies were generated from an earlier pass. Only contigs w/o existing alignment assemblies will be pursued. Otherwise, kill this process and remove the 'assemblies' directory, then restart. -Thread 3 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769022-0.462711754794331.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 5278. -Thread 2 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769022-0.128009359891625.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 13555. -Thread 6 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769022-0.977187826604681.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 1430. -Thread 5 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769023-0.262293261083872.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 7333. -Thread 1 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769023-0.40543911031364.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 3838. -Thread 7 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769023-0.457377864354388.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 9616. -Thread 4 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769023-0.568041899082349.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 25534. -ERROR, thread 1 exited with error Can't open file /loc/scratch/5495869/pasa.1670769023-0.40543911031364.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 3838. - -ERROR, thread 2 exited with error Can't open file /loc/scratch/5495869/pasa.1670769022-0.128009359891625.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 13555. - -ERROR, thread 3 exited with error Can't open file /loc/scratch/5495869/pasa.1670769022-0.462711754794331.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 5278. - -ERROR, thread 4 exited with error Can't open file /loc/scratch/5495869/pasa.1670769023-0.568041899082349.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 25534. - -ERROR, thread 5 exited with error Can't open file /loc/scratch/5495869/pasa.1670769023-0.262293261083872.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 7333. - -ERROR, thread 6 exited with error Can't open file /loc/scratch/5495869/pasa.1670769022-0.977187826604681.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 1430. - -ERROR, thread 7 exited with error Can't open file /loc/scratch/5495869/pasa.1670769023-0.457377864354388.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 9616. - -Thread 11 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769025-0.631634204023616.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 12431. -Thread 14 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769025-0.569490806506114.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 15409. -Thread 8 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769025-0.193429036372439.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 4504. -Thread 9 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769025-0.508540524010645.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 18184. -Thread 13 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769025-0.761479575493471.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 17971. -Thread 10 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769025-0.404627130207704.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 9379. -Thread 12 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769025-0.597653939928026.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 11115. -ERROR, thread 8 exited with error Can't open file /loc/scratch/5495869/pasa.1670769025-0.193429036372439.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 4504. - -ERROR, thread 9 exited with error Can't open file /loc/scratch/5495869/pasa.1670769025-0.508540524010645.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 18184. - -ERROR, thread 10 exited with error Can't open file /loc/scratch/5495869/pasa.1670769025-0.404627130207704.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 9379. - -ERROR, thread 11 exited with error Can't open file /loc/scratch/5495869/pasa.1670769025-0.631634204023616.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 12431. - -ERROR, thread 12 exited with error Can't open file /loc/scratch/5495869/pasa.1670769025-0.597653939928026.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 11115. - -ERROR, thread 13 exited with error Can't open file /loc/scratch/5495869/pasa.1670769025-0.761479575493471.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 17971. - -ERROR, thread 14 exited with error Can't open file /loc/scratch/5495869/pasa.1670769025-0.569490806506114.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 15409. - -Thread 17 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769026-0.778892846153216.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 15803. -Thread 16 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769026-0.102179548078315.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 18190. -Thread 15 terminated abnormally: Can't open file /loc/scratch/5495869/pasa.1670769026-0.341801809453504.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 13074. -ERROR, thread 15 exited with error Can't open file /loc/scratch/5495869/pasa.1670769026-0.341801809453504.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 13074. - -ERROR, thread 16 exited with error Can't open file /loc/scratch/5495869/pasa.1670769026-0.102179548078315.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 18190. - -ERROR, thread 17 exited with error Can't open file /loc/scratch/5495869/pasa.1670769026-0.778892846153216.+.in at /usr/local/src/PASApipeline/PerlLib/CDNA/PASA_alignment_assembler.pm line 232, <$fh> line 15803. - -Error, 17 threads failed. - -Error, cmd: -/usr/local/src/PASApipeline/scripts/assemble_clusters.dbi \ - -G /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta \ - -M '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite' \ - -T 6 \ - > trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.pasa_alignment_assembly_building.ascii_illustrations.out -died with ret 7424 No such file or directory at /usr/local/src/PASApipeline/PerlLib/Pipeliner.pm line 187. - Pipeliner::run(Pipeliner=HASH(0x5602202ca5f0)) called at /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl line 1047 -``` -
-
- - -##### Assessing the completion of `Launch_PASA_pipeline.pl` -*It seems to have completed successfully* -
-Click to view - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -pwd - -mv stderr.log.txt stderr.log.3.txt -mv stdout.log.txt stdout.log.3.txt - -., -``` - -Results of ., printed to terminal -```txt -total 394M -drwxrws--- 6 kalavatt 5.4K Dec 11 08:23 ./ -drwxrws--- 3 kalavatt 141 Dec 11 08:19 ../ --rw-r--r-- 1 kalavatt 8 Dec 10 16:05 11.ooc --rw-r--r-- 1 kalavatt 12M Dec 10 16:26 alignment.validations.output -lrwxrwxrwx 1 kalavatt 120 Dec 10 16:06 blat.spliced_alignments.gff3 -> pblat_outdir/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean.pslx.top_1.gff3 -drwxr-s--- 2 kalavatt 3.7K Dec 10 15:53 cleaning_1/ --rw-rw-r-- 1 kalavatt 12K Dec 10 15:53 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-r--r-- 1 kalavatt 7.2M Dec 10 16:05 gmap.spliced_alignments.gff3 --rw-r--r-- 1 kalavatt 0 Dec 10 16:05 gmap.spliced_alignments.gff3.completed --rw-r--r-- 1 kalavatt 0 Dec 10 16:06 minimap2.splice_alignments.gff3.ok --rw-r--r-- 1 kalavatt 4.8M Dec 10 16:06 minimap2.spliced_alignments.gff3 --rw-rw-r-- 1 kalavatt 3.5K Dec 10 15:53 outparts_cln.sort -drwxr-sr-x 2 kalavatt 325 Dec 11 07:06 pasa_run.log.dir/ -drwxr-sr-x 2 kalavatt 3.0K Dec 11 07:40 __pasa_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite_SQLite_chkpts/ --rw-r--r-- 1 kalavatt 19K Dec 11 07:34 __pasa_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite_SQLite_chkpts.cmds_log -drwxr-sr-x 3 kalavatt 270 Dec 10 16:06 pblat_outdir/ --rw-rw-r-- 1 kalavatt 1.7K Dec 10 15:53 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 61K Dec 10 17:33 stderr.log.1.txt --rw-rw---- 1 kalavatt 36K Dec 11 06:30 stderr.log.2.txt --rw-rw---- 1 kalavatt 61K Dec 11 07:34 stderr.log.3.txt --rw-rw---- 1 kalavatt 1008 Dec 10 16:07 stdout.log.1.txt --rw-rw---- 1 kalavatt 0 Dec 11 06:30 stdout.log.2.txt --rw-rw---- 1 kalavatt 197 Dec 11 07:40 stdout.log.3.txt --rw-r--r-- 1 kalavatt 0 Dec 10 16:05 tmp-31731-44938-out --rw-r--r-- 1 kalavatt 0 Dec 10 16:05 tmp-31731-44938-out.tmp.1 --rw-r--r-- 1 kalavatt 0 Dec 10 16:05 tmp-31731-44938-out.tmp.2 --rw-r--r-- 1 kalavatt 0 Dec 10 16:05 tmp-31731-44938-out.tmp.3 --rw-r--r-- 1 kalavatt 0 Dec 10 16:05 tmp-31731-44938-out.tmp.4 --rw-r--r-- 1 kalavatt 0 Dec 10 16:05 tmp-31731-44938-out.tmp.5 --rw-rw---- 1 kalavatt 984 Dec 10 15:54 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.align_assembly.config --rw-r--r-- 1 kalavatt 151M Dec 11 07:29 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite --rw-r--r-- 1 kalavatt 16M Dec 11 07:18 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.assemblies.fasta --rw-r--r-- 1 kalavatt 265K Dec 10 16:38 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.failed_blat_alignments.gff3 --rw-r--r-- 1 kalavatt 379K Dec 10 16:38 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.failed_blat_alignments.gtf --rw-r--r-- 1 kalavatt 115K Dec 10 16:49 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.failed_gmap_alignments.gff3 --rw-r--r-- 1 kalavatt 188K Dec 10 16:49 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.failed_gmap_alignments.gtf --rw-r--r-- 1 kalavatt 181K Dec 10 17:01 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.failed_minimap2_alignments.gff3 --rw-r--r-- 1 kalavatt 264K Dec 10 17:01 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.failed_minimap2_alignments.gtf --rw-r--r-- 1 kalavatt 35M Dec 11 07:06 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.pasa_alignment_assembly_building.ascii_illustrations.out --rw-r--r-- 1 kalavatt 789K Dec 11 07:31 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.pasa_assemblies.bed --rw-r--r-- 1 kalavatt 3.0M Dec 11 07:40 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.pasa_assemblies_described.txt --rw-r--r-- 1 kalavatt 2.2M Dec 11 07:30 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.pasa_assemblies.gff3 --rw-r--r-- 1 kalavatt 3.0M Dec 11 07:34 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.pasa_assemblies.gtf --rw-r--r-- 1 kalavatt 338K Dec 10 17:06 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.polyAsites.fasta --rw-r--r-- 1 kalavatt 2.9M Dec 10 16:32 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.valid_blat_alignments.bed --rw-r--r-- 1 kalavatt 5.2M Dec 10 16:29 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.valid_blat_alignments.gff3 --rw-r--r-- 1 kalavatt 10M Dec 10 16:37 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.valid_blat_alignments.gtf --rw-r--r-- 1 kalavatt 3.1M Dec 10 16:43 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.valid_gmap_alignments.bed --rw-r--r-- 1 kalavatt 5.3M Dec 10 16:41 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.valid_gmap_alignments.gff3 --rw-r--r-- 1 kalavatt 11M Dec 10 16:49 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.valid_gmap_alignments.gtf --rw-r--r-- 1 kalavatt 3.0M Dec 10 16:55 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.valid_minimap2_alignments.bed --rw-r--r-- 1 kalavatt 5.4M Dec 10 16:52 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.valid_minimap2_alignments.gff3 --rw-r--r-- 1 kalavatt 11M Dec 10 17:01 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite.valid_minimap2_alignments.gtf --rw-rw---- 1 kalavatt 28M Dec 10 15:52 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 10 15:53 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 10 15:53 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean --rw-r--r-- 1 kalavatt 1.7M Dec 10 16:06 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean.cidx --rw-r--r-- 1 kalavatt 1.3M Dec 10 16:04 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean.fai --rw-r--r-- 1 kalavatt 7.0M Dec 10 16:06 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean.mm2.bam --rw-r--r-- 1 kalavatt 11K Dec 10 16:06 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean.mm2.bam.bai --rw-r--r-- 1 kalavatt 0 Dec 10 16:06 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean.mm2.bam.ok --rw-rw-r-- 1 kalavatt 1.9M Dec 10 15:53 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 10 15:53 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions -``` - -Using `Sublime`, manually create more easily readable versions of the `stderr` and `stdout` files; replace all instances of -```txt -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -``` -with blank lines - -Also, for any line containing `CMD:`, add a new line before the identified lines - -Give these "cleaned up" `stderr` and `stdout` `.clean.txt` extensions -
- - -#### Previous shell script for running `Singularity` `PASA` `Launch_PASA_pipeline.pl` -
-Click to view previous script, etc. - -```bash -singularity run \ - --bind /loc/scratch \ - --bind $(pwd) \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/Launch_PASA_pipeline.pl \ - -c tmp.align_assembly.config \ - -I 1002 \ - -C \ - -R \ - -g "${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -t transcripts.fasta.clean \ - -T \ - -u transcripts.fasta \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --TDN tdn.accs \ - --ALIGNERS blat,gmap \ - --CPU "${SLURM_CPUS_ON_NODE}" \ - > >(tee -a stdout.log.txt) \ - 2> >(tee -a stderr.log.txt >&2) - -export PASAHOME=/usr/local/src/PASApipeline -singularity run \ - ~/singularity-docker-etc/PASA.sif \ - "${PASAHOME}/Launch_PASA_pipeline.pl" -``` -
-
- - -#### Options for `Launch_PASA_pipeline.pl` -
-Launch_PASA_pipeline.pl options (edited and reformatted for increased readability) - -```txt -############################# Options ############################### -# -# * indicates required -# -# --config | -c * alignment assembly configuration file -# -# // spliced alignment settings -# --ALIGNERS aligners (available options include: gmap, blat, minimap2... -# can run using several, e.g., 'gmap,blat,minimap2') -# -N max number of top scoring alignments (default: 1) -# --MAX_INTRON_LENGTH | -I (max intron length parameter passed to GMAP or BLAT) -# (default: 100000) -# --IMPORT_CUSTOM_ALIGNMENTS_GFF3 only using the alignments supplied in the corresponding GFF3 -# file -# --trans_gtf incorporate cufflinks- or stringtie-generated transcripts -# -# -# // actions -# --create | -C flag, create database -# --replace | -r flag, drop database if -C is also given; this will DELETE -# all your data and it is irreversible -# --run | -R flag, run alignment/assembly pipeline -# --annot_compare | -A (see section below; can use with opts -L and --annots) -# compare to annotated genes -# --ALT_SPLICE flag, run alternative splicing analysis -# -# -# // input files -# --genome | -g * genome sequence FASTA file (should contain annot db asmbl_id -# as header accession) -# --transcripts | -t * transcript db -# -f file containing a list of fl-cdna accessions -# --TDN file containing a list of accessions corresponding to -# Trinity (full) de novo assemblies (not genome-guided) -# -# -# // polyAdenylation site identification ** highly recommended ** -# -T flag, transcript db were trimmed using the TGI seqclean tool -# -u value, transcript db containing untrimmed sequences (input -# to seqclean) -# -# -# // Misc -# --TRANSDECODER flag, run transdecoder to identify candidate full-length -# coding transcripts -# --CPU multithreading (default: 2) -# --PASACONF path to a user-defined pasa.conf file containing mysql -# connection info -# (used in place of the $PASAHOME/pasa_conf/conf.txt file) -# (and allows for users to have their own unique mysql -# connection info) -# (instead of the pasa role account) -# -# -d flag, debug -# -h flag, print this option menu and quit -# -##################################################################### -# -# // Transcript alignment clustering options (clusters are fed into the PASA assembler): -# -# By default, clusters together transcripts based on any overlap (even 1 base!) -# -# Alternatives: -# -# --stringent_alignment_overlap (suggested: 30.0) overlapping transcripts must have this min -# % overlap to be clustered -# -# --gene_overlap (suggested: 50.0) transcripts overlapping existing gene -# annotations are clustered; intergenic alignments are -# clustered by default mechanism -# * if --gene_overlap, must also specify --annots with -# annotations in recognizable format (gtf, gff3, or data -# adapted) (just examines 'gene' rows, though) -# -# -# --INVALIDATE_SINGLE_EXON_ESTS invalidates single exon ests so that none can be built into -# pasa assemblies -# -# --transcribed_is_aligned_orient flag for strand-specific RNA-Seq assemblies, the aligned -# orientation should correspond to the transcribed orientation -# -##################################################################### -# -# // Annotation comparison options (used in conjunction with -A at top). -# -# -L load annotations (use in conjunction with --annots) -# --annots existing gene annotations in recognized format (gtf, gff3, -# or custom adapted) -# --GENETIC_CODE (default: universal, options: Euplotes, Tetrahymena, -# Candida, Acetabularia) -# -###################### Process Args and Options ##################### -``` -
-
- - -### Run [`build_comprehensive_transcriptome.dbi`](https://github.com/PASApipeline/PASApipeline/wiki/PASA_comprehensive_db#build-a-comprehensive-transcriptome-database-using-genome-guided-and-de-novo-rna-seq-assembly) - -#### What are the options/arguments for `build_comprehensive_transcriptome.dbi`? -
-Click to view - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -export PASAHOME="/usr/local/src/PASApipeline" -singularity run \ - --bind "${HOME}" \ - --bind "$(pwd)" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi -``` - -Help message (cleaned for readability) -```txt -############################# Options ############################### -# -# -c configuration file for align-assembly -# -# -t transcripts fasta file input to PASA -# -# -# Mapping criteria: (if not met, considered not mapping at all) -# -# --prefix prefix for output file names. (default: compreh_init_build) -# -# --min_per_ID default: 95 -# -# --min_per_aligned default: 30 -# -# -###################### Process Args and Options ##################### -``` -
-
- - -#### On the meaning of the parameters, using this script, etc. -*...taken from the [`PASA` Google Group](https://groups.google.com/g/pasapipeline-users)* -- [Build comprehensive transcriptome questions](https://groups.google.com/g/pasapipeline-users/c/F1rqmPP1cCc/m/1_ueLz7YBgAJ) -- [Annotation update will include transcripts that do not match any gene-model?](https://groups.google.com/g/pasapipeline-users/c/VMw2uFAI7fk/m/g_k-LhAaHwAJ) -- [Comprehensive Transcriptome Database Using Genome-guided and De novo RNA-Seq Assembly](https://groups.google.com/g/pasapipeline-users/c/KdcAyqYUxgU/m/BT7os7LzAQAJ) - + `#NOTE` This particular thread answers my questions about not using any files output by step #3 as input for step #4 when building comprehensive transcriptome databases - + This message is particularly relevant: *"There is a MySQL database that PASA stores data in. Therefore information can be shared from one step to the next without explicitly passing all the data on the command line."* - + `#QUESTION` Does this mean that step #4 needs to be called in the same directory as step #3? `#TODO` Submit this question on the forum - - -#### Questions for Brian Haas regarding `build_comprehensive_transcriptome.dbi` and `PASA` in general - -##### Question #1 - -###### Text by me -Hi Brian and community, - -I see in this previous post that, when building comprehensive transcriptome databases, outfiles from step #3 (running `Launch_PASA_pipeline.pl`) don't need to be explicitly passed to step #4 (running `build_comprehensive_transcriptome.dbi`) because of implicit detection of the MySQL or SQLite database... - - -###### Realization -`#ANSWER` It doesn't matter where I call the script from; so long as the database path and name in the configuration file is correct, the script will no where to grab things - - -##### Question #2: Question about small and/or microbial genomes and `--trans_gtf` (in `Launch_PASA_pipeline.pl`) - -###### [Text by me](https://groups.google.com/g/pasapipeline-users/c/0e8jkG6aLtI/m/LLTI9gCNBAAJ) -Hi Brian and community, - -Apologies for the off-topic nature of this question. - -I'm interested to include a `.gtf` from `StringTie` for argument `--trans_gtf` when building a comprehensive transcriptome database, i.e., when running `Launch_PASA_pipeline.pl`. - -For transcriptome assembly, I'm working with *S. cerevisiae* Illumina RNA-seq data. I'm interested to know if, in your or anyone else's experience, `StringTie` should be called with altered parameters when working with organisms with small and/or microbial genomes. For example, I know that this is recommended when using genome-free and genome-guided `Trinity` with small and/or microbial genomes. No response from the `StringTie` developers so far, and my scans of the literature show that some authors have used default parameters in this or similar contexts. - -Or, perhaps, do you not recommend using `StringTie` with small and/or microbial genomes, similar to your not recommending the use of `Cufflinks` in that context? - -Thanks; any input will be appreciated, -Kris - -~~*Sent; awaiting response (hopefully, I'll get one)*~~ - - -###### [Response from Brian](https://groups.google.com/g/pasapipeline-users/c/0e8jkG6aLtI/m/aLmE5neOBAAJ) -Hi Kris, - -The main danger here is generating fusion transcripts from overlapping -transcripts (UTRs, mostly). If the data are strand-specific and you -can run stringtie in strand-specific mode, it could be fine. (If it's -not strand-specific, it'll be trouble w/ compact genomes). I'd just -suggest looking at your stringtie results first in IGV and/or run some -analyses like cuffcompare (or whatever the new version is called) to -compare your stringtie gtf to the reference gene structure annotation -and assess the level of fusion transcripts generated. - -If things look good, you could use PASA to merge everything, but use -the option to require sufficient overlap among alignments to assemble -to again mitigate the neighboring fusion transcript issue. - -hope this helps, - -~b - - -###### Follow-up from me -Thanks, Brian; yes, that's very helpful. When you mention "the option to require sufficient overlap among alignments to assemble to again mitigate the neighboring fusion transcript issue," you mean adjusting the `--stringent_alignment_overlap` parameter when running `Launch_PASA_pipeline.pl`, is that correct? - -In trial experiments I'm running with `PASA`, in which I'm using `.fasta` files from genome-guided and genome-free `Trinity` (but nothing from `StringTie`/`Cufflinks`/etc. yet), so it makes me wonder if it would be helpful to increase the value for `--stringent_alignment_overlap` from 30.0 to perhaps something higher? (Currently, I'm calling `Launch_PASA_pipeline.pl` with `--stringent_alignment_overlap 30.0`, following the advice here.) If I understand things correctly, a higher percentage overlap for `--stringent_alignment_overlap` could/would mitigate the false identification of fusion transcripts that result from working with data from small, gene-dense genomes such as S. cerevisiae—, is that right? - -A little experimental context could be helpful here: We're working with a *S. cerevisiae* knock-out model that increases global antisense transcription, and we want to accurately identify these ncRNA transcripts and use the custom annotations in downstream analyses. In our work so far, we see a lot of both fusion and (apparently) fragmentary transcripts. Do you think that adjusting the value for `--stringent_alignment_overlap` could be useful in this context? Or perhaps leaving the `--stringent_alignment_overlap` at 30.0 is reasonable? Thinking of this, I'm reminded also of the `--gene_overlap` option available in `Launch_PASA_pipeline.pl` (which should be called together with the `-L` flag and `--annots_gff3` option). Could calling `Launch_PASA_pipeline.pl` with `--gene_overlap` set to some value be potentially useful in this context? - -Thanks! And thanks for these great programs and documentation, -Kris - - -###### [Follow-up response from Brian](https://groups.google.com/g/pasapipeline-users/c/0e8jkG6aLtI/m/HA8WVrOdBAAJ) - -Hi Kris, - -Responses below: - -> `On Sun, Dec 11, 2022 at 3:40 PM Kris Alavattam wrote:` -> -> Thanks, Brian—yes, that's very helpful. When you mention "the option to require sufficient overlap among alignments to assemble to again mitigate the neighboring fusion transcript issue," you mean adjusting the --stringent_alignment_overlap parameter when running Launch_PASA_pipeline.pl—is that correct? - -Yes, that's right. - -> In trial experiments I'm running with PASA, in which I'm using .fasta files from genome-guided and genome-free Trinity (but nothing from StringTie/Cufflinks/etc. yet), so it makes me wonder if it would be helpful to increase the value for --stringent_alignment_overlap from 30.0 to perhaps something higher? (Currently, I'm calling Launch_PASA_pipeline.pl with --stringent_alignment_overlap 30.0, following the advice here.) If I understand things correctly, a higher percentage overlap for --stringent_alignment_overlap could/would mitigate the false identification of fusion transcripts that result from working with data from small, gene-dense genomes such as S. cerevisiae—is that right? - -It'll mitigate PASA contributing more to it, for sure, but it won't -address the problem for those cases where the input transcripts are -already fused. The 30% is probably fine. - -> A little experimental context could be helpful here: We're working with a S. cerevisiae knock-out model that increases global antisense transcription, and we want to accurately identify these ncRNA transcripts and use the custom annotations in downstream analyses. In our work so far, we see a lot of both fusion and (apparently) fragmentary transcripts. Do you think that adjusting the value for --stringent_alignment_overlap could be useful in this context? Or perhaps leaving the --stringent_alignment_overlap at 30.0 is reasonable? Thinking of this, I'm reminded also of the --gene_overlap option available in Launch_PASA_pipeline.pl (which should be called together with the -L flag and --annots_gff3 option). Could calling Launch_PASA_pipeline.pl with --gene_overlap set to some value be potentially useful in this context? - -Given the high quality of the reference annotations for S. cerevisiae, -using --gene_overlap is easily justified. - -If I remember correctly, there aren't many introns in S. cerevisiae. -For antisense transcript to be properly identified as such, you'd need -to have to carefully take into account the transcribed orientation -based on the aligned orientation - with Trinity run in the -strand-specific modes to ensure proper transcript orientation during -reconstruction. Just something to be aware of, but you probably -already dealt with this given you're already deep into the process. - -Hope this helps, - -~b - - -#### On running `build_comprehensive_transcriptome.dbi` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -export PASAHOME="/usr/local/src/PASApipeline" -singularity run \ - --bind "${HOME}" \ - --bind "$(pwd)" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \ - -c "${sub}.align_assembly.config" \ - -t "${sub}.transcripts.fasta" \ - --min_per_ID 95 \ - --min_per_aligned 30 \ - > >(tee -a stdout.log.bct.txt) \ - 2> >(tee -a stderr.log.bct.txt >&2) -``` -It completed successfully (and was quick) - -
-Messages printed to terminal - -```txt -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). --connecting to SQLite db: /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite -[84 / 84] processing map/fail TRINITY_DN71_c0_g1_i4CMD: /usr/local/src/PASApipeline/scripts/PASA_transcripts_and_assemblies_to_GFF3.dbi -M '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite' --F compreh_init_build/compreh_init_build.fasta > compreh_init_build/compreh_init_build.gff3 - -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -CMD: /usr/local/src/PASApipeline/scripts/PASA_transcripts_and_assemblies_to_GFF3.dbi -M '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_test-run/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.pasa.sqlite' -F compreh_init_build/compreh_init_build.fasta -B > compreh_init_build/compreh_init_build.bed -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). - - -Done. - -See files: compreh_init_build/compreh_init_build.fasta and compreh_init_build/compreh_init_build.geneToTrans_mapping -``` -
- - -## Miscellaneous -- [On viewing .gff3 files in IGV](https://software.broadinstitute.org/software/igv/GFF) diff --git a/results/2022-1201/test_PASA_parallelized-run_gene-overlap.md b/results/2022-1201/test_PASA_parallelized-run_gene-overlap.md deleted file mode 100644 index 718e41e..0000000 --- a/results/2022-1201/test_PASA_parallelized-run_gene-overlap.md +++ /dev/null @@ -1,1907 +0,0 @@ - -# `work_PASA_parallelized-run_param_gene-overlap.md` - -
-Table of contents - - -1. [Grab a node, get to the right directory, etc.](#grab-a-node-get-to-the-right-directory-etc) -1. [Set up arrays for genome-free and -guided `.fasta`s](#set-up-arrays-for-genome-free-and--guided-fastas) - 1. [Run an `echo` test for the arrays](#run-an-echo-test-for-the-arrays) -1. [Set up names of experiment directories, files, etc.](#set-up-names-of-experiment-directories-files-etc) -1. [Run `PASA` precursor commands](#run-pasa-precursor-commands) - 1. [Get a `.gff3` ready for precursor commands, calling `Launch_PASA_pipeline.pl`, etc.](#get-a-gff3-ready-for-precursor-commands-calling-launch_pasa_pipelinepl-etc) - 1. [Set up and run loop for precursor commands](#set-up-and-run-loop-for-precursor-commands) - 1. [Results of loop for precursor commands](#results-of-loop-for-precursor-commands) -1. [Run `PASA` `Launch_PASA_pipeline.pl`](#run-pasa-launch_pasa_pipelinepl) - 1. [Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl`](#set-up-a-job-submission-script-for-pasa-launch_pasa_pipelinepl) - 1. [Run the job submission script for `PASA` `Launch_PASA_pipeline.pl`](#run-the-job-submission-script-for-pasa-launch_pasa_pipelinepl) -1. [Run `PASA` `build_comprehensive_transcriptome.dbi`](#run-pasa-build_comprehensive_transcriptomedbi) - 1. [Set up a job submission script for `PASA` `build_comprehensive_transcriptome.dbi`](#set-up-a-job-submission-script-for-pasa-build_comprehensive_transcriptomedbi) - 1. [Run the job submission script for `PASA` `build_comprehensive_transcriptome.dbi`](#run-the-job-submission-script-for-pasa-build_comprehensive_transcriptomedbi) - - -
-
- - -## Grab a node, get to the right directory, etc. -
-Click to view - -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 and corresponding defaults - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -Trinity_env -ml Singularity -``` -
-
-
- - -## Set up arrays for genome-free and -guided `.fasta`s -```bash -#!/bin/bash -#DONTRUN - -# Create an array of files of interest, including relative paths ------------- -# "Partially processed" genome-guided .fastas ------------ -unset GG_proc -typeset -a GG_proc -while IFS=" " read -r -d $'\0'; do - GG_proc+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_proc[@]}" - -GF_proc="files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_proc -typeset -A T_proc -for i in "${GG_proc[@]}"; do - # echo "Working with ${i}..." - T_proc["${i}"]+="${GF_proc}" - echo "" -done -# echoTest "${!T_proc[@]}" -# echoTest "${T_proc[@]}" - - -# "Fully processed" genome-guided .fastas ---------------- -unset GG_full -typeset -a GG_full -while IFS=" " read -r -d $'\0'; do - GG_full+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-full" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_full[@]}" - -GF_full="files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_full -typeset -A T_full -for i in "${GG_full[@]}"; do - # echo "Working with ${i}..." - T_full["${i}"]+="${GF_full}" - echo "" -done -# echoTest "${!T_full[@]}" -# echoTest "${T_full[@]}" - - -# "Unprocessed" genome-guided .fastas -------------------- -unset GG_un -typeset -a GG_un -while IFS=" " read -r -d $'\0'; do - GG_un+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_unprocessed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_un[@]}" - -GF_un="files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta" -unset T_un -typeset -A T_un -for i in "${GG_un[@]}"; do - T_un["${i}"]+="${GF_un}" - echo "" -done -# echoTest "${!T_un[@]}" -# echoTest "${T_un[@]}" - -#IMPORTANT stackoverflow.com/questions/29161323/how-to-keep-associative-array-order -``` - - -### Run an `echo` test for the arrays -
-Set up and results of message test - -```bash -# How do the assignments look? ----------------------------------------------- -message=""" -# 'Partially processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_proc[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_proc[@]}") - - -# 'Fully processed' genome-guided .fastas ---------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_full[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_full[@]}") - - -# 'Unprocessed' genome-guided .fastas -------------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_un[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_un[@]}") -""" -echo "${message}" -``` - -```txt -# 'Partially processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta - -#+ Values (genome-free Trinity files) -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta - - -# 'Fully processed' genome-guided .fastas ---------------- -#+ Keys (genome-guided Trinity files) -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta - -#+ Values (genome-free Trinity files) -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - - -# 'Unprocessed' genome-guided .fastas -------------------- -#+ Keys (genome-guided Trinity files) -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta - -#+ Values (genome-free Trinity files) -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -``` -
-
-
- - -## Set up names of experiment directories, files, etc. -```bash -#!/bin/bash -#DONTRUN #CONTINUE - - -# Establish functions for setting up names of directories, files, etc. ------- -name_tx_db() { - # This function parses pertinent path and filename info to determine the - # name of a transcriptome database; it's highly dependent on the context of - # these particular sets of experiments - # - # :param 1: associate array "keys" - # :param 2: number of key to work with - echo "${1}" \ - | cut -d ' ' -f "${2}" \ - | cut -d '/' -f 3- \ - | rev \ - | cut -b 18- \ - | rev -} - - -get_key_or_value() { - #TODO Documentation - echo "${1}" | cut -d ' ' -f "${2}" -} - - -get_GG_or_GF() { - #TODO Documentation - echo "${1}" | cut -d ',' -f "${2}" -} - - -# Make an associative array that connects the information for... ------------- -#+ Trinity-GF .fastas, Trinity-GG .fastas, and PASA databases -unset info_tx_db -typeset -A info_tx_db -for i in "T_proc" "T_full" "T_un"; do - for j in 1 2 3; do - # i="T_proc" - # j=1 - echo "# -------------------------------------" - old_key="get_key_or_value \"\${!${i}[*]}\" ${j}" - echo "${old_key}" - eval "${old_key}" - echo "" - - old_value="get_key_or_value \"\${${i}[*]}\" ${j}" - echo "${old_value}" - eval "${old_value}" - echo "" - - name_of_db="name_tx_db \"\${!${i}[*]}\" ${j}" - echo "${name_of_db}" - eval "${name_of_db}" - echo "" - - new_key="$(echo "$(eval "${name_of_db}")")" - new_val="$(echo "$(eval "${old_key}"),$(eval "${old_value}")")" - info_tx_db["${new_key}"]="${new_val}" - echo "" - done -done - -# Make sure everything is correctly associated -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" -done -``` - -
-Results of for-loop echo test - -`for i in "${!info_tx_db[@]}"; do ...` -```txt -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -``` -
-
-
- - -## Run `PASA` precursor commands - -### Get a `.gff3` ready for precursor commands, calling `Launch_PASA_pipeline.pl`, etc. -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd "${HOME}/genomes/sacCer3/Ensembl/108/gff3" || \ - echo "cd'ing failed; check on this" - -#TODO Test that *.gff3.gz is present as well -if [[ ! -f "Saccharomyces_cerevisiae.R64-1-1.108.gff3" ]]; then - zcat Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz \ - > Saccharomyces_cerevisiae.R64-1-1.108.gff3 -fi -``` - - -### Set up and run loop for precursor commands -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Be in the main work directory -if [[ \ - "$(pwd)" != "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ -]]; then - mwd -fi - -#LOOP -count=1 -for i in "${!info_tx_db[@]}"; do - echo "# ========================================================================" - echo "# Working with iteration ### ${count} ### =======================================" - echo "# ========================================================================" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" && echo "" - - - # ------------------------------------------------------------------------ - # mkdir the experiment directory ----------------------------------------- - # ------------------------------------------------------------------------ - echo "# ------------------------------------------------------------------------" - echo "# mkdir the experiment directory -----------------------------------------" - echo "# ------------------------------------------------------------------------" - [[ -d "files_PASA_param_gene-overlap/${i}" ]] \ - || mkdir -p "files_PASA_param_gene-overlap/${i}" - echo "" && echo "" - - - # ------------------------------------------------------------------------ - # cat the .fastas from Trinity genome-free and genome-guided approaches -- - # ------------------------------------------------------------------------ - echo "# ------------------------------------------------------------------------" - echo "# cat the .fastas from Trinity genome-free and genome-guided approaches --" - echo "# ------------------------------------------------------------------------" - cmd="cat \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 1) \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 2) \ - > files_PASA_param_gene-overlap/${i}/${i}.transcripts.fasta" - echo "${cmd}" - eval "${cmd}" - echo "" && echo "" - - - # ------------------------------------------------------------------------ - # Create .txts for Trinity genome-free transcript accessions ------------- - # ------------------------------------------------------------------------ - echo "# ------------------------------------------------------------------------" - echo "# Create .txts for Trinity genome-free transcript accessions -------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - \< {genome_free_fasta} \ - \> {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "files_PASA_param_gene-overlap/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - < {genome_free_fasta} \ - > {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "files_PASA_param_gene-overlap/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - echo "" && echo "" - - - # ------------------------------------------------------------------------ - # Clean the transcript sequences ----------------------------------------- - # ------------------------------------------------------------------------ - echo "# ------------------------------------------------------------------------" - echo "# Clean the transcript sequences -----------------------------------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "files_PASA_param_gene-overlap/${i}/${i}.transcripts.fasta" - - cd "files_PASA_param_gene-overlap/${i}" - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${i}.transcripts.fasta" - cd - - echo "" && echo "" - - - # ------------------------------------------------------------------------ - # Write .config files for the calls to PASA ------------------------------ - # ------------------------------------------------------------------------ - echo "# ------------------------------------------------------------------------" - echo "# Write .config files for the calls to PASA ------------------------------" - echo "# ------------------------------------------------------------------------" -cat << align_assembly > "./files_PASA_param_gene-overlap/${i}/${i}.align_assembly.config" -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/${i}/${i}.pasa.sqlite - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 -align_assembly - echo "" && echo "" - - - # ------------------------------------------------------------------------ - # Symlink to the S. cerevisiae .fasta in each PASA experiment directory -- - # ------------------------------------------------------------------------ - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .fasta in each PASA experiment directory --" - echo "# ------------------------------------------------------------------------" - fasta_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" - fasta_SC_sym="$(basename ${fasta_SC_orig})" - cmd="ln -s ${fasta_SC_orig} ${fasta_SC_sym}" - cd "files_PASA_param_gene-overlap/${i}" - # unlink "${fasta_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - # ------------------------------------------------------------------------ - # Symlink to the S. cerevisiae .gff3 in each PASA experiment directory --- - # ------------------------------------------------------------------------ - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory ---" - echo "# ------------------------------------------------------------------------" - gff3_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" - gff3_SC_sym="$(basename ${gff3_SC_orig})" - cmd="ln -s ${gff3_SC_orig} ${gff3_SC_sym}" - cd "files_PASA_param_gene-overlap/${i}" - # unlink "${gff3_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - # ------------------------------------------------------------------------ - # Print the contents of the given PASA experiment directory -------------- - # ------------------------------------------------------------------------ - echo "# ------------------------------------------------------------------------" - echo "# Print the contents of the given PASA experiment directory --------------" - echo "# ------------------------------------------------------------------------" - ., "./files_PASA_param_gene-overlap/${i}" - echo "" && echo "" - echo "" && echo "" - - (( count++ )) -done -``` - - -### Results of loop for precursor commands -
-Click to view - -```txt -# ======================================================================== -# Working with iteration ### 1 ### ======================================= -# ======================================================================== -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - - -# ------------------------------------------------------------------------ -# mkdir the experiment directory ----------------------------------------- -# ------------------------------------------------------------------------ -mkdir: created directory 'files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd' - - -# ------------------------------------------------------------------------ -# cat the .fastas from Trinity genome-free and genome-guided approaches -- -# ------------------------------------------------------------------------ -cat files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta - - -# ------------------------------------------------------------------------ -# Create .txts for Trinity genome-free transcript accessions ------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl < files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). - - -# ------------------------------------------------------------------------ -# Clean the transcript sequences ----------------------------------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/bin/seqclean files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -seqclean running options: -seqclean trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta - Standard log file: seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.log - Error log file: err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.log - Using 1 CPUs for cleaning --= Rebuilding trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta cdb index =- - Launching actual cleaning process: - psx -p 1 -n 1000 -i trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta -d cleaning -C '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta:ANLMS100:::11:0' -c '/usr/local/src/PASApipeline/bin/seqclean.psx' -Collecting cleaning reports - -************************************************** -Sequences analyzed: 30388 ------------------------------------ - valid: 30387 (2822 trimmed) - trashed: 1 -************************************************** -----= Trashing summary =------ - by 'dust': 1 ------------------------------- -Output file containing only valid and trimmed sequences: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.clean -For trimming and trashing details see cleaning report : trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.cln --------------------------------------------------- -seqclean (trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta) finished on machine - in /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd, without a detectable error. -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Write .config files for the calls to PASA ------------------------------ -# ------------------------------------------------------------------------ - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .fasta in each PASA experiment directory -- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory --- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Print the contents of the given PASA experiment directory -------------- -# ------------------------------------------------------------------------ -total 71M -drwxrws--- 3 kalavatt 1.1K Dec 13 07:48 ./ -drwxrws--- 3 kalavatt 83 Dec 13 07:48 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 13 07:48 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 13 07:48 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 13 07:48 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 89 Dec 13 07:48 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -> /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 -lrwxrwxrwx 1 kalavatt 109 Dec 13 07:48 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.7K Dec 13 07:48 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 921 Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - - - - -# ======================================================================== -# Working with iteration ### 2 ### ================================ -# ======================================================================== -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - - -# ------------------------------------------------------------------------ -# mkdir the experiment directory ----------------------------------------- -# ------------------------------------------------------------------------ -mkdir: created directory 'files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd' - - -# ------------------------------------------------------------------------ -# cat the .fastas from Trinity genome-free and genome-guided approaches -- -# ------------------------------------------------------------------------ -cat files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta - - -# ------------------------------------------------------------------------ -# Create .txts for Trinity genome-free transcript accessions ------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl < files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). - - -# ------------------------------------------------------------------------ -# Clean the transcript sequences ----------------------------------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/bin/seqclean files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -seqclean running options: -seqclean trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta - Standard log file: seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.log - Error log file: err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.log - Using 1 CPUs for cleaning --= Rebuilding trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta cdb index =- - Launching actual cleaning process: - psx -p 1 -n 1000 -i trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta -d cleaning -C '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta:ANLMS100:::11:0' -c '/usr/local/src/PASApipeline/bin/seqclean.psx' -Collecting cleaning reports - -************************************************** -Sequences analyzed: 30979 ------------------------------------ - valid: 30978 (2863 trimmed) - trashed: 1 -************************************************** -----= Trashing summary =------ - by 'dust': 1 ------------------------------- -Output file containing only valid and trimmed sequences: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.clean -For trimming and trashing details see cleaning report : trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.cln --------------------------------------------------- -seqclean (trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta) finished on machine - in /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd, without a detectable error. -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Write .config files for the calls to PASA ------------------------------ -# ------------------------------------------------------------------------ - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .fasta in each PASA experiment directory -- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory --- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Print the contents of the given PASA experiment directory -------------- -# ------------------------------------------------------------------------ -total 82M -drwxrws--- 3 kalavatt 1.1K Dec 13 07:48 ./ -drwxrws--- 4 kalavatt 223 Dec 13 07:48 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 13 07:48 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 13 07:48 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 13 07:48 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 89 Dec 13 07:48 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -> /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 -lrwxrwxrwx 1 kalavatt 109 Dec 13 07:48 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.7K Dec 13 07:48 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 923 Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - - - - -# ======================================================================== -# Working with iteration ### 3 ### ================================ -# ======================================================================== -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - - -# ------------------------------------------------------------------------ -# mkdir the experiment directory ----------------------------------------- -# ------------------------------------------------------------------------ -mkdir: created directory 'files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd' - - -# ------------------------------------------------------------------------ -# cat the .fastas from Trinity genome-free and genome-guided approaches -- -# ------------------------------------------------------------------------ -cat files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta - - -# ------------------------------------------------------------------------ -# Create .txts for Trinity genome-free transcript accessions ------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl < files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). - - -# ------------------------------------------------------------------------ -# Clean the transcript sequences ----------------------------------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/bin/seqclean files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -seqclean running options: -seqclean trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta - Standard log file: seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.log - Error log file: err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.log - Using 1 CPUs for cleaning --= Rebuilding trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta cdb index =- - Launching actual cleaning process: - psx -p 1 -n 1000 -i trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta -d cleaning -C '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta:ANLMS100:::11:0' -c '/usr/local/src/PASApipeline/bin/seqclean.psx' -Collecting cleaning reports - -************************************************** -Sequences analyzed: 30158 ------------------------------------ - valid: 30158 (3627 trimmed) - trashed: 0 -************************************************** -Output file containing only valid and trimmed sequences: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.clean -For trimming and trashing details see cleaning report : trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.cln --------------------------------------------------- -seqclean (trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta) finished on machine - in /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd, without a detectable error. -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Write .config files for the calls to PASA ------------------------------ -# ------------------------------------------------------------------------ - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .fasta in each PASA experiment directory -- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory --- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Print the contents of the given PASA experiment directory -------------- -# ------------------------------------------------------------------------ -total 51M -drwxrws--- 3 kalavatt 1.1K Dec 13 07:49 ./ -drwxrws--- 5 kalavatt 304 Dec 13 07:48 ../ -drwxr-s--- 2 kalavatt 3.4K Dec 13 07:49 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 13 07:49 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.3K Dec 13 07:49 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 89 Dec 13 07:49 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -> /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 -lrwxrwxrwx 1 kalavatt 109 Dec 13 07:49 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.6K Dec 13 07:49 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 917 Dec 13 07:49 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 26M Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.6M Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 13 07:49 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 13 07:49 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 13 07:48 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - - - - -# ======================================================================== -# Working with iteration ### 4 ### ================================ -# ======================================================================== -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - - -# ------------------------------------------------------------------------ -# mkdir the experiment directory ----------------------------------------- -# ------------------------------------------------------------------------ -mkdir: created directory 'files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local' - - -# ------------------------------------------------------------------------ -# cat the .fastas from Trinity genome-free and genome-guided approaches -- -# ------------------------------------------------------------------------ -cat files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta - - -# ------------------------------------------------------------------------ -# Create .txts for Trinity genome-free transcript accessions ------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl < files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). - - -# ------------------------------------------------------------------------ -# Clean the transcript sequences ----------------------------------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/bin/seqclean files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -seqclean running options: -seqclean trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta - Standard log file: seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.log - Error log file: err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.log - Using 1 CPUs for cleaning --= Rebuilding trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta cdb index =- - Launching actual cleaning process: - psx -p 1 -n 1000 -i trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta -d cleaning -C '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta:ANLMS100:::11:0' -c '/usr/local/src/PASApipeline/bin/seqclean.psx' -Collecting cleaning reports - -************************************************** -Sequences analyzed: 30474 ------------------------------------ - valid: 30474 (3657 trimmed) - trashed: 0 -************************************************** -Output file containing only valid and trimmed sequences: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.clean -For trimming and trashing details see cleaning report : trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.cln --------------------------------------------------- -seqclean (trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta) finished on machine - in /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local, without a detectable error. -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Write .config files for the calls to PASA ------------------------------ -# ------------------------------------------------------------------------ - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .fasta in each PASA experiment directory -- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory --- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Print the contents of the given PASA experiment directory -------------- -# ------------------------------------------------------------------------ -total 51M -drwxrws--- 3 kalavatt 974 Dec 13 07:49 ./ -drwxrws--- 6 kalavatt 377 Dec 13 07:49 ../ -drwxr-s--- 2 kalavatt 3.2K Dec 13 07:49 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 13 07:49 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.1K Dec 13 07:49 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 89 Dec 13 07:49 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -> /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 -lrwxrwxrwx 1 kalavatt 109 Dec 13 07:49 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.5K Dec 13 07:49 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 901 Dec 13 07:49 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 13 07:49 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 13 07:49 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 13 07:49 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 13 07:49 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 13 07:49 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - - - - -# ======================================================================== -# Working with iteration ### 5 ### ================================ -# ======================================================================== -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - - -# ------------------------------------------------------------------------ -# mkdir the experiment directory ----------------------------------------- -# ------------------------------------------------------------------------ -mkdir: created directory 'files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd' - - -# ------------------------------------------------------------------------ -# cat the .fastas from Trinity genome-free and genome-guided approaches -- -# ------------------------------------------------------------------------ -cat files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta - - -# ------------------------------------------------------------------------ -# Create .txts for Trinity genome-free transcript accessions ------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl < files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). - - -# ------------------------------------------------------------------------ -# Clean the transcript sequences ----------------------------------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/bin/seqclean files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -seqclean running options: -seqclean trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta - Standard log file: seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.log - Error log file: err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.log - Using 1 CPUs for cleaning --= Rebuilding trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta cdb index =- - Launching actual cleaning process: - psx -p 1 -n 1000 -i trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta -d cleaning -C '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta:ANLMS100:::11:0' -c '/usr/local/src/PASApipeline/bin/seqclean.psx' -Collecting cleaning reports - -************************************************** -Sequences analyzed: 30659 ------------------------------------ - valid: 30659 (3702 trimmed) - trashed: 0 -************************************************** -Output file containing only valid and trimmed sequences: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.clean -For trimming and trashing details see cleaning report : trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.cln --------------------------------------------------- -seqclean (trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta) finished on machine - in /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd, without a detectable error. -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Write .config files for the calls to PASA ------------------------------ -# ------------------------------------------------------------------------ - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .fasta in each PASA experiment directory -- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory --- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Print the contents of the given PASA experiment directory -------------- -# ------------------------------------------------------------------------ -total 52M -drwxrws--- 3 kalavatt 1.1K Dec 13 07:50 ./ -drwxrws--- 7 kalavatt 459 Dec 13 07:49 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 13 07:50 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 13 07:50 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.3K Dec 13 07:50 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 89 Dec 13 07:50 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -> /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 -lrwxrwxrwx 1 kalavatt 109 Dec 13 07:50 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.6K Dec 13 07:50 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 919 Dec 13 07:50 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 13 07:49 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 13 07:49 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 13 07:50 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 13 07:50 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 13 07:49 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - - - - -# ======================================================================== -# Working with iteration ### 6 ### ================================ -# ======================================================================== -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - - -# ------------------------------------------------------------------------ -# mkdir the experiment directory ----------------------------------------- -# ------------------------------------------------------------------------ -mkdir: created directory 'files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd' - - -# ------------------------------------------------------------------------ -# cat the .fastas from Trinity genome-free and genome-guided approaches -- -# ------------------------------------------------------------------------ -cat files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta - - -# ------------------------------------------------------------------------ -# Create .txts for Trinity genome-free transcript accessions ------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl < files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). - - -# ------------------------------------------------------------------------ -# Clean the transcript sequences ----------------------------------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/bin/seqclean files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -seqclean running options: -seqclean trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta - Standard log file: seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.log - Error log file: err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.log - Using 1 CPUs for cleaning --= Rebuilding trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta cdb index =- - Launching actual cleaning process: - psx -p 1 -n 1000 -i trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta -d cleaning -C '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta:ANLMS100:::11:0' -c '/usr/local/src/PASApipeline/bin/seqclean.psx' -Collecting cleaning reports - -************************************************** -Sequences analyzed: 30624 ------------------------------------ - valid: 30624 (3723 trimmed) - trashed: 0 -************************************************** -Output file containing only valid and trimmed sequences: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.clean -For trimming and trashing details see cleaning report : trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --------------------------------------------------- -seqclean (trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta) finished on machine - in /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd, without a detectable error. -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Write .config files for the calls to PASA ------------------------------ -# ------------------------------------------------------------------------ - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .fasta in each PASA experiment directory -- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory --- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Print the contents of the given PASA experiment directory -------------- -# ------------------------------------------------------------------------ -total 72M -drwxrws--- 3 kalavatt 1.1K Dec 13 07:50 ./ -drwxrws--- 8 kalavatt 542 Dec 13 07:50 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 13 07:50 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 13 07:50 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 13 07:50 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 89 Dec 13 07:50 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -> /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 -lrwxrwxrwx 1 kalavatt 109 Dec 13 07:50 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.6K Dec 13 07:50 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 921 Dec 13 07:50 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 13 07:50 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 13 07:50 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 13 07:50 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 13 07:50 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 13 07:50 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - - - - -# ======================================================================== -# Working with iteration ### 7 ### ================================ -# ======================================================================== -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local - - -# ------------------------------------------------------------------------ -# mkdir the experiment directory ----------------------------------------- -# ------------------------------------------------------------------------ -mkdir: created directory 'files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local' - - -# ------------------------------------------------------------------------ -# cat the .fastas from Trinity genome-free and genome-guided approaches -- -# ------------------------------------------------------------------------ -cat files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta - - -# ------------------------------------------------------------------------ -# Create .txts for Trinity genome-free transcript accessions ------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl < files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). - - -# ------------------------------------------------------------------------ -# Clean the transcript sequences ----------------------------------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/bin/seqclean files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -seqclean running options: -seqclean trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta - Standard log file: seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.log - Error log file: err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.log - Using 1 CPUs for cleaning --= Rebuilding trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta cdb index =- - Launching actual cleaning process: - psx -p 1 -n 1000 -i trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta -d cleaning -C '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta:ANLMS100:::11:0' -c '/usr/local/src/PASApipeline/bin/seqclean.psx' -Collecting cleaning reports - -************************************************** -Sequences analyzed: 31008 ------------------------------------ - valid: 31008 (3743 trimmed) - trashed: 0 -************************************************** -Output file containing only valid and trimmed sequences: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.clean -For trimming and trashing details see cleaning report : trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.cln --------------------------------------------------- -seqclean (trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta) finished on machine - in /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local, without a detectable error. -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Write .config files for the calls to PASA ------------------------------ -# ------------------------------------------------------------------------ - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .fasta in each PASA experiment directory -- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory --- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Print the contents of the given PASA experiment directory -------------- -# ------------------------------------------------------------------------ -total 54M -drwxrws--- 3 kalavatt 988 Dec 13 07:51 ./ -drwxrws--- 9 kalavatt 617 Dec 13 07:50 ../ -drwxr-s--- 2 kalavatt 3.3K Dec 13 07:51 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 13 07:51 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.2K Dec 13 07:51 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 89 Dec 13 07:51 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -> /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 -lrwxrwxrwx 1 kalavatt 109 Dec 13 07:51 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.6K Dec 13 07:51 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 905 Dec 13 07:51 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 13 07:50 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 13 07:50 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 13 07:51 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 2.0M Dec 13 07:51 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 13 07:50 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - - - - -# ======================================================================== -# Working with iteration ### 8 ### ================================ -# ======================================================================== -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - - -# ------------------------------------------------------------------------ -# mkdir the experiment directory ----------------------------------------- -# ------------------------------------------------------------------------ -mkdir: created directory 'files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd' - - -# ------------------------------------------------------------------------ -# cat the .fastas from Trinity genome-free and genome-guided approaches -- -# ------------------------------------------------------------------------ -cat files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta - - -# ------------------------------------------------------------------------ -# Create .txts for Trinity genome-free transcript accessions ------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl < files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). - - -# ------------------------------------------------------------------------ -# Clean the transcript sequences ----------------------------------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/bin/seqclean files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -seqclean running options: -seqclean trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta - Standard log file: seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log - Error log file: err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log - Using 1 CPUs for cleaning --= Rebuilding trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta cdb index =- - Launching actual cleaning process: - psx -p 1 -n 1000 -i trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta -d cleaning -C '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta:ANLMS100:::11:0' -c '/usr/local/src/PASApipeline/bin/seqclean.psx' -Collecting cleaning reports - -************************************************** -Sequences analyzed: 31067 ------------------------------------ - valid: 31066 (2881 trimmed) - trashed: 1 -************************************************** -----= Trashing summary =------ - by 'dust': 1 ------------------------------- -Output file containing only valid and trimmed sequences: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean -For trimming and trashing details see cleaning report : trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --------------------------------------------------- -seqclean (trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta) finished on machine - in /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd, without a detectable error. -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Write .config files for the calls to PASA ------------------------------ -# ------------------------------------------------------------------------ - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .fasta in each PASA experiment directory -- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory --- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Print the contents of the given PASA experiment directory -------------- -# ------------------------------------------------------------------------ -total 54M -drwxrws--- 3 kalavatt 1.1K Dec 13 07:51 ./ -drwxrws--- 10 kalavatt 702 Dec 13 07:51 ../ -drwxr-s--- 2 kalavatt 3.7K Dec 13 07:51 cleaning_1/ --rw-rw-r-- 1 kalavatt 12K Dec 13 07:51 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.5K Dec 13 07:51 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 89 Dec 13 07:51 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -> /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 -lrwxrwxrwx 1 kalavatt 109 Dec 13 07:51 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.7K Dec 13 07:51 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 925 Dec 13 07:51 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 13 07:51 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 13 07:51 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 13 07:51 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 13 07:51 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 13 07:51 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - - - - -# ======================================================================== -# Working with iteration ### 9 ### ================================ -# ======================================================================== -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local - - -# ------------------------------------------------------------------------ -# mkdir the experiment directory ----------------------------------------- -# ------------------------------------------------------------------------ -mkdir: created directory 'files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local' - - -# ------------------------------------------------------------------------ -# cat the .fastas from Trinity genome-free and genome-guided approaches -- -# ------------------------------------------------------------------------ -cat files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta - - -# ------------------------------------------------------------------------ -# Create .txts for Trinity genome-free transcript accessions ------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl < files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta > files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). - - -# ------------------------------------------------------------------------ -# Clean the transcript sequences ----------------------------------------- -# ------------------------------------------------------------------------ -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 /home/kalavatt/singularity-docker-etc/PASA.sif /usr/local/src/PASApipeline/bin/seqclean files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local, may not be available -perl: warning: Setting locale failed. -perl: warning: Please check that your locale settings: - LANGUAGE = "en_US:", - LC_ALL = (unset), - LC_CTYPE = "en_US.UTF-8", - LANG = "en_US.UTF-8" - are supported and installed on your system. -perl: warning: Falling back to the standard locale ("C"). -seqclean running options: -seqclean trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta - Standard log file: seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.log - Error log file: err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.log - Using 1 CPUs for cleaning --= Rebuilding trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta cdb index =- - Launching actual cleaning process: - psx -p 1 -n 1000 -i trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta -d cleaning -C '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta:ANLMS100:::11:0' -c '/usr/local/src/PASApipeline/bin/seqclean.psx' -Collecting cleaning reports - -************************************************** -Sequences analyzed: 30996 ------------------------------------ - valid: 30996 (3720 trimmed) - trashed: 0 -************************************************** -Output file containing only valid and trimmed sequences: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.clean -For trimming and trashing details see cleaning report : trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.cln --------------------------------------------------- -seqclean (trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta) finished on machine - in /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local, without a detectable error. -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Write .config files for the calls to PASA ------------------------------ -# ------------------------------------------------------------------------ - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .fasta in each PASA experiment directory -- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory --- -# ------------------------------------------------------------------------ -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------------------------------------------ -# Print the contents of the given PASA experiment directory -------------- -# ------------------------------------------------------------------------ -total 54M -drwxrws--- 3 kalavatt 981 Dec 13 07:52 ./ -drwxrws--- 11 kalavatt 776 Dec 13 07:51 ../ -drwxr-s--- 2 kalavatt 3.2K Dec 13 07:52 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 13 07:52 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.1K Dec 13 07:52 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 89 Dec 13 07:52 Saccharomyces_cerevisiae.R64-1-1.108.gff3 -> /home/kalavatt/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3 -lrwxrwxrwx 1 kalavatt 109 Dec 13 07:52 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.5K Dec 13 07:52 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 903 Dec 13 07:52 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 13 07:51 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 13 07:51 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 13 07:52 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 2.0M Dec 13 07:52 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 13 07:51 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - - - - -``` -
-
-
- - -## Run `PASA` `Launch_PASA_pipeline.pl` - -### Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -s_name="submit_launch-PASA-pipeline_build-comprehensive-transcriptome_param_gene-overlap.sh" -threads=8 - -if [[ -f "./sh_err_out/${s_name}" ]]; then - rm "./sh_err_out/${s_name}" -fi -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_experiment="\${1}" -str_accessions="\${2}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "files_PASA_param_gene-overlap/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - "\${PASAHOME}/Launch_PASA_pipeline.pl" \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - --stringent_alignment_overlap 30.0 \\ - -L \\ - --annots "Saccharomyces_cerevisiae.R64-1-1.108.gff3" \\ - --gene_overlap 50.0 \\ - --ALIGNERS "blat,gmap,minimap2" \\ - 1> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stderr.log" >&2) - -if [[ -f "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - # cyberciti.biz/faq/linux-unix-script-check-if-file-empty-or-not/ - if [[ -s "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stderr.log" >&2) - else - echo "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf is empty" - echo "Check on things..." - fi -fi - -script -# vi "sh_err_out/${s_name}" # :q -``` - - -### Run the job submission script for `PASA` `Launch_PASA_pipeline.pl` -`#DEKHO` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Pick element 0, then try a trial job submission; cancel the job after you -#+ know it's working in order to submit jobs via looping over the full -#+ associative array - -# for i in "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd"; do -for i in "${!info_tx_db[@]}"; do - str_experiment="${i}" - str_accessions="$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" - - echo "# =========================================================" - echo "- \${str_experiment} is ${str_experiment}" - echo "- \${str_accessions} is ${str_accessions}" - echo "" - - sbatch "sh_err_out/${s_name}" "${str_experiment}" "${str_accessions}" - sleep 0.25 - echo "" - echo "" -done -``` - -
-Job submission messages printed to terminal - -```txt -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -Submitted batch job 5648235 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -Submitted batch job 5648236 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -Submitted batch job 5648237 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5648238 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -Submitted batch job 5648239 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -Submitted batch job 5648240 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5648241 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -Submitted batch job 5648242 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5648243 - - -``` -
-
-
- -`#TODO` If this works, then go back and change the way we're doing things in `work_PASA_parallelized-run.md` and then rerun things there -
- - diff --git a/results/2022-1201/test_PASA_parallelized-run_stringent-alignment-overlap.md b/results/2022-1201/test_PASA_parallelized-run_stringent-alignment-overlap.md deleted file mode 100644 index 1dc60ee..0000000 --- a/results/2022-1201/test_PASA_parallelized-run_stringent-alignment-overlap.md +++ /dev/null @@ -1,3403 +0,0 @@ - -# `test_PASA_parallelized-run_stringent-alignment-overlap.md` - -
-Table of contents - - -1. [Grab a node, get to the right directory, etc.](#grab-a-node-get-to-the-right-directory-etc) -1. [Set up arrays for genome-free and -guided `.fasta`s](#set-up-arrays-for-genome-free-and--guided-fastas) - 1. [Run an `echo` test for the arrays](#run-an-echo-test-for-the-arrays) -1. [Set up names of experiment directories, files, etc.](#set-up-names-of-experiment-directories-files-etc) -1. [Run `PASA` precursor commands](#run-pasa-precursor-commands) - 1. [`mkdir` the experiment directories](#mkdir-the-experiment-directories) - 1. [`cat` the `.fasta`s from `Trinity` genome-free and genome-guided approaches](#cat-the-fastas-from-trinity-genome-free-and-genome-guided-approaches) - 1. [Create `.txt`s for `Trinity` genome-free transcript accessions](#create-txts-for-trinity-genome-free-transcript-accessions) - 1. ["Clean" the transcript sequences](#clean-the-transcript-sequences) - 1. [Write `.config` files for the calls to `PASA`](#write-config-files-for-the-calls-to-pasa) - 1. [Symlink to the *S. cerevisiae* `.fasta` in each `PASA` experiment directory](#symlink-to-the-s-cerevisiae-fasta-in-each-pasa-experiment-directory) -1. [Run `PASA` `Launch_PASA_pipeline.pl`](#run-pasa-launch_pasa_pipelinepl) - 1. [First, perform `echo` tests for the general command](#first-perform-echo-tests-for-the-general-command) - 1. [Build and run the scripts for `PASA` job submissions to `SLURM`](#build-and-run-the-scripts-for-pasa-job-submissions-to-slurm) - 1. [Set up a script for `echo` testing](#set-up-a-script-for-echo-testing) - 1. [Run the `echo` test script \(`bash`\)](#run-the-echo-test-script-bash) - 1. [Run the `echo` test script \(`SLURM`\)](#run-the-echo-test-script-slurm) - 1. [Set up a job submission script](#set-up-a-job-submission-script) - 1. [Run the job submission script](#run-the-job-submission-script) - 1. [Checking on things](#checking-on-things) -1. [Run `PASA` `build_comprehensive_transcriptome.dbi`](#run-pasa-build_comprehensive_transcriptomedbi) - 1. [Set up a job submission script for `PASA` `build_comprehensive_transcriptome.dbi`](#set-up-a-job-submission-script-for-pasa-build_comprehensive_transcriptomedbi) - 1. [Run the job submission script for `PASA` `build_comprehensive_transcriptome.dbi`](#run-the-job-submission-script-for-pasa-build_comprehensive_transcriptomedbi) -1. [Miscellaneous](#miscellaneous) -1. [Miscellaneous](#miscellaneous-1) -1. [Miscellaneous](#miscellaneous-2) -1. [Miscellaneous](#miscellaneous-3) -1. [Build the script for submitting...](#build-the-script-for-submitting) - 1. [Run `echo` tests](#run-echo-tests) - - -
-
- - -## Grab a node, get to the right directory, etc. -
-Click to view - -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 and corresponding defaults - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -Trinity_env -ml Singularity -``` - -
-
-
- - -## Set up arrays for genome-free and -guided `.fasta`s -```bash -#!/bin/bash -#DONTRUN - -# Create an array of files of interest, including relative paths ------------- -# "Partially processed" genome-guided .fastas ------------ -unset GG_proc -typeset -a GG_proc -while IFS=" " read -r -d $'\0'; do - GG_proc+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_proc[@]}" - -GF_proc="files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_proc -typeset -A T_proc -for i in "${GG_proc[@]}"; do - echo "Working with ${i}..." - T_proc["${i}"]+="${GF_proc}" - echo "" -done -# echoTest "${!T_proc[@]}" -# echoTest "${T_proc[@]}" - - -# "Fully processed" genome-guided .fastas ---------------- -unset GG_full -typeset -a GG_full -while IFS=" " read -r -d $'\0'; do - GG_full+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-full" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_full[@]}" - -GF_full="files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_full -typeset -A T_full -for i in "${GG_full[@]}"; do - echo "Working with ${i}..." - T_full["${i}"]+="${GF_full}" - echo "" -done -# echoTest "${!T_full[@]}" -# echoTest "${T_full[@]}" - - -# "Unprocessed" genome-guided .fastas -------------------- -unset GG_un -typeset -a GG_un -while IFS=" " read -r -d $'\0'; do - GG_un+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_unprocessed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_un[@]}" - -GF_un="files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta" -unset T_un -typeset -A T_un -for i in "${GG_un[@]}"; do - echo "Working with ${i}..." - T_un["${i}"]+="${GF_un}" - echo "" -done -# echoTest "${!T_un[@]}" -# echoTest "${T_un[@]}" - -#IMPORTANT stackoverflow.com/questions/29161323/how-to-keep-associative-array-order -``` - - -### Run an `echo` test for the arrays -
-Set up and results of message test - -```bash -# How do the assignments look? ----------------------------------------------- -message=""" -# 'Partially processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_proc[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_proc[@]}") - - -# 'Fully processed' genome-guided .fastas ---------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_full[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_full[@]}") - - -# 'Unprocessed' genome-guided .fastas -------------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_un[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_un[@]}") -""" -echo "${message}" -``` - -```txt -# 'Partially processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta - -#+ Values (genome-free Trinity files) -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta - - -# 'Fully processed' genome-guided .fastas ---------------- -#+ Keys (genome-guided Trinity files) -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta - -#+ Values (genome-free Trinity files) -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - - -# 'Unprocessed' genome-guided .fastas -------------------- -#+ Keys (genome-guided Trinity files) -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta - -#+ Values (genome-free Trinity files) -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -``` -
-
-
- - -## Set up names of experiment directories, files, etc. -```bash -#!/bin/bash -#DONTRUN #CONTINUE - - -# Establish functions for setting up names of directories, files, etc. ------- -name_tx_db() { - # This function parses pertinent path and filename info to determine the - # name of a transcriptome database; it's highly dependent on the context of - # these particular sets of experiments - # - # :param 1: associate array "keys" - # :param 2: number of key to work with - echo "${1}" \ - | cut -d ' ' -f "${2}" \ - | cut -d '/' -f 3- \ - | rev \ - | cut -b 18- \ - | rev -} - - -get_key_or_value() { - #TODO Documentation - echo "${1}" | cut -d ' ' -f "${2}" -} - - -get_GG_or_GF() { - #TODO Documentation - echo "${1}" | cut -d ',' -f "${2}" -} - - -# Make an associative array that connects the information for... ------------- -#+ Trinity-GF .fastas, Trinity-GG .fastas, and PASA databases -unset info_tx_db -typeset -A info_tx_db -for i in "T_proc" "T_full" "T_un"; do - for j in 1 2 3; do - # i="T_proc" - # j=1 - echo "# -------------------------------------" - old_key="get_key_or_value \"\${!${i}[*]}\" ${j}" - echo "${old_key}" - eval "${old_key}" - echo "" - - old_value="get_key_or_value \"\${${i}[*]}\" ${j}" - echo "${old_value}" - eval "${old_value}" - echo "" - - name_of_db="name_tx_db \"\${!${i}[*]}\" ${j}" - echo "${name_of_db}" - eval "${name_of_db}" - echo "" - - new_key="$(echo "$(eval "${name_of_db}")")" - new_val="$(echo "$(eval "${old_key}"),$(eval "${old_value}")")" - info_tx_db["${new_key}"]="${new_val}" - echo "" - done -done -echoTest "${!info_tx_db[@]}" -echoTest "${info_tx_db[@]}" - -# Make sure everything is correctly associated -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" -done -``` - -
-Results of echo tests, etc. - -`for i in "T_proc" "T_full" "T_un"; do ...` -```txt -# ------------------------------------- -get_key_or_value "${!T_proc[*]}" 1 -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta - -get_key_or_value "${T_proc[*]}" 1 -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta - -name_tx_db "${!T_proc[*]}" 1 -trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - - -# ------------------------------------- -get_key_or_value "${!T_proc[*]}" 2 -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta - -get_key_or_value "${T_proc[*]}" 2 -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta - -name_tx_db "${!T_proc[*]}" 2 -trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - - -# ------------------------------------- -get_key_or_value "${!T_proc[*]}" 3 -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta - -get_key_or_value "${T_proc[*]}" 3 -files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta - -name_tx_db "${!T_proc[*]}" 3 -trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - - -# ------------------------------------- -get_key_or_value "${!T_full[*]}" 1 -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta - -get_key_or_value "${T_full[*]}" 1 -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - -name_tx_db "${!T_full[*]}" 1 -trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - - -# ------------------------------------- -get_key_or_value "${!T_full[*]}" 2 -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta - -get_key_or_value "${T_full[*]}" 2 -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - -name_tx_db "${!T_full[*]}" 2 -trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - - -# ------------------------------------- -get_key_or_value "${!T_full[*]}" 3 -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta - -get_key_or_value "${T_full[*]}" 3 -files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - -name_tx_db "${!T_full[*]}" 3 -trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - - -# ------------------------------------- -get_key_or_value "${!T_un[*]}" 1 -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta - -get_key_or_value "${T_un[*]}" 1 -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta - -name_tx_db "${!T_un[*]}" 1 -trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local - - -# ------------------------------------- -get_key_or_value "${!T_un[*]}" 2 -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta - -get_key_or_value "${T_un[*]}" 2 -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta - -name_tx_db "${!T_un[*]}" 2 -trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - - -# ------------------------------------- -get_key_or_value "${!T_un[*]}" 3 -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta - -get_key_or_value "${T_un[*]}" 3 -files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta - -name_tx_db "${!T_un[*]}" 3 -trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -``` - -`echoTest "${!info_tx_db[@]}"` -```txt -trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local -trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -``` - -`echoTest "${info_tx_db[@]}"` -```txt -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta,files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta,files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta,files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta,files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta,files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta,files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta,files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta,files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta,files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -``` - -`for i in "${!info_tx_db[@]}"; do ...` -```txt -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -``` -
-
-
- - -## Run `PASA` precursor commands - -### `mkdir` the experiment directories -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" - [[ -d "files_PASA/${i}" ]] || mkdir -p "files_PASA/${i}" - echo "" -done -``` - -
-Command results printed to terminal - -```txt -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -mkdir: created directory 'files_PASA' -mkdir: created directory 'files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd' - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -mkdir: created directory 'files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd' - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -mkdir: created directory 'files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd' - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - -mkdir: created directory 'files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local' - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - -mkdir: created directory 'files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd' - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - -mkdir: created directory 'files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd' - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local - -mkdir: created directory 'files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local' - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -mkdir: created directory 'files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd' - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local - -mkdir: created directory 'files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local' -``` -
-
- - -### `cat` the `.fasta`s from `Trinity` genome-free and genome-guided approaches -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" - - cmd="cat \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 1) \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 2) \ - > files_PASA/${i}/${i}.transcripts.fasta" - echo "${cmd}" - echo "" - - eval "${cmd}" - echo "" -done -``` - -
-Command results printed to terminal - -```txt -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -cat files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -cat files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -cat files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - -cat files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta > files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - -cat files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - -cat files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local - -cat files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta > files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -cat files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta > files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local - -cat files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta > files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta -``` -
-
- - -### Create `.txt`s for `Trinity` genome-free transcript accessions -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Perform echo tests -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" - - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - \< {genome_free_fasta} \ - \> {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "files_PASA/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - echo "" - echo "" -done -``` - -
-Results of echo tests (edited for increased readability) - -```txt -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl - < files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - > files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl - < files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - > files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl - < files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta - > files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl - < files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta - > files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl - < files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta - > files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl - < files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta - > files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl - < files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta - > files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl - < files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta - > files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/misc_utilities/accession_extractor.pl - < files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta - > files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions -``` -
-
- -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Run the commands -export PASAHOME="/usr/local/src/PASApipeline" - -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" - - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - < {genome_free_fasta} \ - > {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "files_PASA/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - echo "" - echo "" -done - -cd files_PASA && .,s && cd - -``` - -
-Results of .,s in files_PASA/ printed to terminal - -```txt -./trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd: -total 35M -drwxrws--- 2 kalavatt 205 Dec 11 15:11 ./ -drwxrws--- 11 kalavatt 776 Dec 11 14:55 ../ --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd: -total 35M -drwxrws--- 2 kalavatt 204 Dec 11 15:11 ./ -drwxrws--- 11 kalavatt 776 Dec 11 14:55 ../ --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd: -total 34M -drwxrws--- 2 kalavatt 203 Dec 11 15:11 ./ -drwxrws--- 11 kalavatt 776 Dec 11 14:55 ../ --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd: -total 16M -drwxrws--- 2 kalavatt 201 Dec 11 15:11 ./ -drwxrws--- 11 kalavatt 776 Dec 11 14:55 ../ --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd: -total 34M -drwxrws--- 2 kalavatt 200 Dec 11 15:11 ./ -drwxrws--- 11 kalavatt 776 Dec 11 14:55 ../ --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd: -total 33M -drwxrws--- 2 kalavatt 199 Dec 11 15:11 ./ -drwxrws--- 11 kalavatt 776 Dec 11 14:55 ../ --rw-rw---- 1 kalavatt 26M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local: -total 34M -drwxrws--- 2 kalavatt 185 Dec 11 15:11 ./ -drwxrws--- 11 kalavatt 776 Dec 11 14:55 ../ --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local: -total 34M -drwxrws--- 2 kalavatt 184 Dec 11 15:11 ./ -drwxrws--- 11 kalavatt 776 Dec 11 14:55 ../ --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local: -total 33M -drwxrws--- 2 kalavatt 183 Dec 11 15:11 ./ -drwxrws--- 11 kalavatt 776 Dec 11 14:55 ../ --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions -``` -
-
- - -### "Clean" the transcript sequences -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Perform echo tests -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" - - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "files_PASA/${i}/${i}.transcripts.fasta" - echo "" -done -``` - -
-Results of echo tests printed to terminal (edited for increased readability) - -```txt -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/bin/seqclean - files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/bin/seqclean - files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/bin/seqclean - files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/bin/seqclean - files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/bin/seqclean - files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/bin/seqclean - files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/bin/seqclean - files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/bin/seqclean - files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local - -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680 - /home/kalavatt/singularity-docker-etc/PASA.sif - /usr/local/src/PASApipeline/bin/seqclean - files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta -``` -
-
- -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Run the commands -export PASAHOME="/usr/local/src/PASApipeline" - -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" - - cd "files_PASA/${i}" - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${i}.transcripts.fasta" - echo "" - - cd - - echo "" - echo "" -done - -cd files_PASA && .,s && cd - -#TODO 1/2 The above command is too slow for serialization, I think; get it into -#TODO 2/2 a generic script and then submit jobs to SLURM - -#TODO Check to see if ${PASAHOME}/bin/seqclean can be parallelized or not -``` - -
-Results of .,s in files_PASA/ printed to terminal - -```txt -./trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd: -total 73M -drwxrws--- 3 kalavatt 822 Dec 11 15:28 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.7K Dec 11 15:28 cleaning_1/ --rw-rw-r-- 1 kalavatt 12K Dec 11 15:28 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.5K Dec 11 15:28 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.7K Dec 11 15:28 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd: -total 55M -drwxrws--- 3 kalavatt 816 Dec 11 15:26 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:26 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:26 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 11 15:26 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.7K Dec 11 15:26 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd: -total 52M -drwxrws--- 3 kalavatt 810 Dec 11 15:25 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:25 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:25 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 11 15:25 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.7K Dec 11 15:25 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:25 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:25 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:25 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd: -total 54M -drwxrws--- 3 kalavatt 808 Dec 11 15:28 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:28 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:28 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 11 15:28 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.6K Dec 11 15:28 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd: -total 71M -drwxrws--- 3 kalavatt 802 Dec 11 15:27 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:27 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:27 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.3K Dec 11 15:27 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.6K Dec 11 15:27 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd: -total 68M -drwxrws--- 3 kalavatt 796 Dec 11 15:26 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.4K Dec 11 15:26 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:26 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.3K Dec 11 15:26 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.6K Dec 11 15:26 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 26M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.6M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local: -total 72M -drwxrws--- 3 kalavatt 752 Dec 11 15:28 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.3K Dec 11 15:28 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:28 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.2K Dec 11 15:28 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.5K Dec 11 15:28 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 2.0M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local: -total 72M -drwxrws--- 3 kalavatt 746 Dec 11 15:29 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.2K Dec 11 15:29 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:29 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.1K Dec 11 15:29 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.5K Dec 11 15:29 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:29 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 2.0M Dec 11 15:29 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local: -total 53M -drwxrws--- 3 kalavatt 740 Dec 11 15:27 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.2K Dec 11 15:27 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:27 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.1K Dec 11 15:27 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.5K Dec 11 15:27 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions -``` -
-
- - -### Write `.config` files for the calls to `PASA` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Just run the commands -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" - - if [[ -f "./files_PASA/${i}/${i}.align_assembly.config" ]]; then - rm "./files_PASA/${i}/${i}.align_assembly.config" - fi - -cat << align_assembly > "./files_PASA/${i}/${i}.align_assembly.config" -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/${i}/${i}.pasa.sqlite - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 -align_assembly -# vi "./files_PASA/${i}/${i}.align_assembly.config" # :q - - echo "" -done - -cd files_PASA && .,s && cd - -``` - -
-Results of .,s in files_PASA/ printed to terminal - -```txt -./trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd: -total 73M -drwxrws--- 3 kalavatt 929 Dec 12 05:37 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.7K Dec 11 15:28 cleaning_1/ --rw-rw-r-- 1 kalavatt 12K Dec 11 15:28 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.5K Dec 11 15:28 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.7K Dec 11 15:28 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 906 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd: -total 55M -drwxrws--- 3 kalavatt 922 Dec 12 05:37 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:26 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:26 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 11 15:26 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.7K Dec 11 15:26 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 904 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd: -total 52M -drwxrws--- 3 kalavatt 915 Dec 12 05:37 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:25 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:25 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 11 15:25 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.7K Dec 11 15:25 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 902 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:25 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:25 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:25 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd: -total 54M -drwxrws--- 3 kalavatt 913 Dec 12 05:37 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:28 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:28 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 11 15:28 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.6K Dec 11 15:28 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 902 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd: -total 71M -drwxrws--- 3 kalavatt 906 Dec 12 05:37 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:27 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:27 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.3K Dec 11 15:27 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.6K Dec 11 15:27 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 900 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd: -total 68M -drwxrws--- 3 kalavatt 899 Dec 12 05:37 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.4K Dec 11 15:26 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:26 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.3K Dec 11 15:26 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.6K Dec 11 15:26 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 898 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 26M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.6M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local: -total 72M -drwxrws--- 3 kalavatt 849 Dec 12 05:37 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.3K Dec 11 15:28 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:28 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.2K Dec 11 15:28 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.5K Dec 11 15:28 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 886 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 2.0M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local: -total 72M -drwxrws--- 3 kalavatt 842 Dec 12 05:37 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.2K Dec 11 15:29 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:29 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.1K Dec 11 15:29 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.5K Dec 11 15:29 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 884 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:29 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 2.0M Dec 11 15:29 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local: -total 53M -drwxrws--- 3 kalavatt 835 Dec 12 05:37 ./ -drwxrws--- 11 kalavatt 720 Dec 11 15:14 ../ -drwxr-s--- 2 kalavatt 3.2K Dec 11 15:27 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:27 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.1K Dec 11 15:27 outparts_cln.sort --rw-rw-r-- 1 kalavatt 1.5K Dec 11 15:27 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 882 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions -``` -
-
- - -### Symlink to the *S. cerevisiae* `.fasta` in each `PASA` experiment directory -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Run the commands -fasta_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" -fasta_SC_sym="$(basename ${fasta_SC})" -cmd="ln -s ${fasta_SC} ${fasta_SC_sym}" -# echo "${cmd}" - -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" - - cd "files_PASA/${i}" - # unlink "${fasta_SC_sym}" - echo "${cmd}" - eval "${cmd}" - echo "" - - cd - - echo "" - echo "" -done - -cd files_PASA && .,s && cd - -``` - -
-Loop messages printed to terminal - -```txt -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ------------------------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -ln -s /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 -``` -
-
- -
-Results of .,s in files_PASA/ printed to terminal - -```txt -./trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd: -total 73M -drwxrws--- 3 kalavatt 1009 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.7K Dec 11 15:28 cleaning_1/ --rw-rw-r-- 1 kalavatt 12K Dec 11 15:28 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.5K Dec 11 15:28 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.7K Dec 11 15:28 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 906 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd: -total 55M -drwxrws--- 3 kalavatt 1002 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:26 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:26 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 11 15:26 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.7K Dec 11 15:26 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 904 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd: -total 52M -drwxrws--- 3 kalavatt 995 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:25 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:25 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 11 15:25 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.7K Dec 11 15:25 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 902 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:25 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:25 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:25 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd: -total 54M -drwxrws--- 3 kalavatt 993 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:28 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:28 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 11 15:28 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.6K Dec 11 15:28 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 902 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd: -total 71M -drwxrws--- 3 kalavatt 986 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:27 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:27 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.3K Dec 11 15:27 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.6K Dec 11 15:27 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 900 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd: -total 68M -drwxrws--- 3 kalavatt 979 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.4K Dec 11 15:26 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:26 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.3K Dec 11 15:26 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.6K Dec 11 15:26 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 898 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 26M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.6M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local: -total 72M -drwxrws--- 3 kalavatt 929 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.3K Dec 11 15:28 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:28 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.2K Dec 11 15:28 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.5K Dec 11 15:28 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 886 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 2.0M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local: -total 72M -drwxrws--- 3 kalavatt 922 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.2K Dec 11 15:29 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:29 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.1K Dec 11 15:29 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.5K Dec 11 15:29 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 884 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:29 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 2.0M Dec 11 15:29 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -./trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local: -total 53M -drwxrws--- 3 kalavatt 915 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.2K Dec 11 15:27 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:27 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.1K Dec 11 15:27 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.5K Dec 11 15:27 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 882 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions -``` -
-
-
- - -## Run `PASA` `Launch_PASA_pipeline.pl` - -### First, perform `echo` tests for the general command -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# # stackoverflow.com/questions/23929235/multi-line-string-with-extra-space-preserved-indentation -# usage=$(cat <<-END -# This is line one. -# This is line two. -# This is line three. -# END -# ) -# echo ${usage} - -for i in "${!info_tx_db[@]}"; do - echo "# =========================================================" - echo "# Work directory ----------------------" - echo "$(pwd)" - echo "" - - echo "# Essential files ---------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" - - echo "# Experiment directory ----------------" - cd "files_PASA/${i}" - echo "" - -cmd=$(cat << command -singularity run \\ - --bind "${HOME}" \\ - --bind "$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \\ - ~/singularity-docker-etc/PASA.sif \\ - ${PASAHOME}/Launch_PASA_pipeline.pl \\ - --CPU "${SLURM_CPUS_ON_NODE}" \\ - -c "${i}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "${i}.transcripts.fasta.clean" \\ - -T \\ - -u "${i}.transcripts.fasta" \\ - --TDN "$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" \\ - --transcribed_is_aligned_orient \\ - --stringent_alignment_overlap 30.0 \\ - --ALIGNERS blat,gmap,minimap2 \\ - 1> >(tee -a "${i}.stdout.log") \\ - 2> >(tee -a "${i}.stderr.log" >&2) -command -) - echo "# Call to Launch_PASA_pipeline.pl -----" - echo -e "${cmd}" - echo "" - - echo "# Contents of experiment directory ----" - ., - echo "" - - echo "# Back to work directory --------------" - cd - - echo "" - echo "" -done -``` - -
-Results of echo tests, etc. printed to terminal - -```txt -# ========================================================= -# Work directory ---------------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -# Essential files --------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -# Experiment directory ---------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -# Call to Launch_PASA_pipeline.pl ----- -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.stderr.log" >&2) - -# Contents of experiment directory ---- -total 52M -drwxrws--- 3 kalavatt 995 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:25 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:25 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 11 15:25 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.7K Dec 11 15:25 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 902 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:25 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:25 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:25 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -# Back to work directory -------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ========================================================= -# Work directory ---------------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -# Essential files --------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -# Experiment directory ---------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -# Call to Launch_PASA_pipeline.pl ----- -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.stderr.log" >&2) - -# Contents of experiment directory ---- -total 55M -drwxrws--- 3 kalavatt 1002 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:26 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:26 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 11 15:26 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.7K Dec 11 15:26 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 904 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -# Back to work directory -------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ========================================================= -# Work directory ---------------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -# Essential files --------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -# Experiment directory ---------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -# Call to Launch_PASA_pipeline.pl ----- -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.stderr.log" >&2) - -# Contents of experiment directory ---- -total 68M -drwxrws--- 3 kalavatt 979 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.4K Dec 11 15:26 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:26 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.3K Dec 11 15:26 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.6K Dec 11 15:26 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 898 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 26M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.6M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -# Back to work directory -------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ========================================================= -# Work directory ---------------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -# Essential files --------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - -# Experiment directory ---------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - -# Call to Launch_PASA_pipeline.pl ----- -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.stderr.log" >&2) - -# Contents of experiment directory ---- -total 53M -drwxrws--- 3 kalavatt 915 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.2K Dec 11 15:27 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:27 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.1K Dec 11 15:27 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.5K Dec 11 15:27 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 882 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:26 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -# Back to work directory -------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ========================================================= -# Work directory ---------------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -# Essential files --------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - -# Experiment directory ---------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - -# Call to Launch_PASA_pipeline.pl ----- -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.stderr.log" >&2) - -# Contents of experiment directory ---- -total 71M -drwxrws--- 3 kalavatt 986 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:27 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:27 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.3K Dec 11 15:27 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.6K Dec 11 15:27 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 900 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 27M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -# Back to work directory -------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ========================================================= -# Work directory ---------------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -# Essential files --------------------- -GG: files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - -# Experiment directory ---------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - -# Call to Launch_PASA_pipeline.pl ----- -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.stderr.log" >&2) - -# Contents of experiment directory ---- -total 54M -drwxrws--- 3 kalavatt 993 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.5K Dec 11 15:28 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:28 err_seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.4K Dec 11 15:28 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.6K Dec 11 15:28 seqcl_trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 902 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 27M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:27 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 401K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -# Back to work directory -------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ========================================================= -# Work directory ---------------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -# Essential files --------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local - -# Experiment directory ---------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local - -# Call to Launch_PASA_pipeline.pl ----- -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.stderr.log" >&2) - -# Contents of experiment directory ---- -total 72M -drwxrws--- 3 kalavatt 929 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.3K Dec 11 15:28 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:28 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.2K Dec 11 15:28 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.5K Dec 11 15:28 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 886 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 2.0M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -# Back to work directory -------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ========================================================= -# Work directory ---------------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -# Essential files --------------------- -GG: files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -# Experiment directory ---------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -# Call to Launch_PASA_pipeline.pl ----- -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.stderr.log" >&2) - -# Contents of experiment directory ---- -total 73M -drwxrws--- 3 kalavatt 1009 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.7K Dec 11 15:28 cleaning_1/ --rw-rw-r-- 1 kalavatt 12K Dec 11 15:28 err_seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.5K Dec 11 15:28 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.7K Dec 11 15:28 seqcl_trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.log --rw-rw---- 1 kalavatt 906 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 1.9M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.cln --rw-rw---- 1 kalavatt 400K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -# Back to work directory -------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# ========================================================= -# Work directory ---------------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -# Essential files --------------------- -GG: files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Trinity-GG.fasta -GF: files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta -DB: trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local - -# Experiment directory ---------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local - -# Call to Launch_PASA_pipeline.pl ----- -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.stderr.log" >&2) - -# Contents of experiment directory ---- -total 72M -drwxrws--- 3 kalavatt 922 Dec 12 08:07 ./ -drwxrws--- 11 kalavatt 720 Dec 12 07:56 ../ -drwxr-s--- 2 kalavatt 3.2K Dec 11 15:29 cleaning_1/ --rw-rw-r-- 1 kalavatt 11K Dec 11 15:29 err_seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.log --rw-rw-r-- 1 kalavatt 3.1K Dec 11 15:29 outparts_cln.sort -lrwxrwxrwx 1 kalavatt 109 Dec 12 08:07 Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -> /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --rw-rw-r-- 1 kalavatt 1.5K Dec 11 15:29 seqcl_trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.log --rw-rw---- 1 kalavatt 884 Dec 12 05:37 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.align_assembly.config --rw-rw---- 1 kalavatt 28M Dec 11 14:46 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta --rw-rw-r-- 1 kalavatt 1.7M Dec 11 15:28 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.cidx --rw-rw-r-- 1 kalavatt 28M Dec 11 15:29 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.clean --rw-rw-r-- 1 kalavatt 2.0M Dec 11 15:29 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.cln --rw-rw---- 1 kalavatt 406K Dec 11 15:11 trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -# Back to work directory -------------- -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 -``` -
-
- - -### Build and run the scripts for `PASA` job submissions to `SLURM` - -#### Set up a script for `echo` testing -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -s_name_echo="echo_submit_launch-PASA-pipeline.sh" -threads=8 - -# Set up command within echo script -#+ -#+ In the command... -#+ - "${str_experiment}" is "${i}" from -#+ "$(for i in "${!info_tx_db[@]}"; do ...; done)" -#+ - "${str_accessions}" is -#+ "$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" -cmd=$(cat << command -echo -e "\ -ml Singularity -export PASAHOME=\"/usr/local/src/PASApipeline\" - -singularity run \\ - --bind \"\${HOME}\" \\ - --bind \"\$(pwd)\" \\ - --bind \"/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}\" \\ - ~/singularity-docker-etc/PASA.sif \\ - \${PASAHOME}/Launch_PASA_pipeline.pl \\ - --CPU \"\${SLURM_CPUS_ON_NODE}\" \\ - -c \"\${str_experiment}.align_assembly.config\" \\ - -C \\ - -R \\ - -g \"Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta\" \\ - -I 1002 \\ - -t \"\${str_experiment}.transcripts.fasta.clean\" \\ - -T \\ - -u \"\${str_experiment}.transcripts.fasta\" \\ - --TDN \"\${str_accessions}\" \\ - --transcribed_is_aligned_orient \\ - --stringent_alignment_overlap 30.0 \\ - --ALIGNERS blat,gmap,minimap2 \\ - 1> >(tee -a \"\${str_experiment}.stdout.log\") \\ - 2> >(tee -a \"\${str_experiment}.stderr.log\" >&2)\ -" -command -) -echo "${cmd}" - -if [[ -f "./sh_err_out/${s_name_echo}" ]]; then - rm "./sh_err_out/${s_name_echo}" -fi -cat << script > "./sh_err_out/${s_name_echo}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name_echo%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name_echo%.sh}.%J.out.txt - -# ${s_name_echo} -# KA -# $(date '+%Y-%m%d') - -str_experiment="\${1}" -str_accessions="\${2}" - -$(echo "${cmd}") - -script -# vi "./sh_err_out/${s_name_echo}" # :q -``` - -
-Results of echo printed to terminal - -```txt -echo -e "ml Singularity -export PASAHOME=\"/usr/local/src/PASApipeline\" - -singularity run \ - --bind \"${HOME}\" \ - --bind \"$(pwd)\" \ - --bind \"/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}\" \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/Launch_PASA_pipeline.pl \ - --CPU \"${SLURM_CPUS_ON_NODE}\" \ - -c \"${str_experiment}.align_assembly.config\" \ - -C \ - -R \ - -g \"Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta\" \ - -I 1002 \ - -t \"${str_experiment}.transcripts.fasta.clean\" \ - -T \ - -u \"${str_experiment}.transcripts.fasta\" \ - --TDN \"${str_accessions}\" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a \"${str_experiment}.stdout.log\") \ - 2> >(tee -a \"${str_experiment}.stderr.log\" >&2)" -``` -
-
- - -##### Run the `echo` test script (`bash`) -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -for i in "${!info_tx_db[@]}"; do - str_experiment="${i}" - str_accessions="$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" - - echo "# =========================================================" - echo "\${str_experiment} is ${str_experiment}" - echo "\${str_accessions} is ${str_accessions}" - echo "" - - bash "./sh_err_out/${s_name_echo}" "${str_experiment}" "${str_accessions}" - echo "" - echo "" -done -``` - -
-Results of echo tests printed to terminal - -```txt -# ========================================================= -${str_experiment} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -${str_accessions} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -ml Singularity -export PASAHOME="/usr/local/src/PASApipeline" - -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.stderr.log" >&2) - - -# ========================================================= -${str_experiment} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -${str_accessions} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -ml Singularity -export PASAHOME="/usr/local/src/PASApipeline" - -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.stderr.log" >&2) - - -# ========================================================= -${str_experiment} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -${str_accessions} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -ml Singularity -export PASAHOME="/usr/local/src/PASApipeline" - -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.stderr.log" >&2) - - -# ========================================================= -${str_experiment} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -${str_accessions} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -ml Singularity -export PASAHOME="/usr/local/src/PASApipeline" - -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.stderr.log" >&2) - - -# ========================================================= -${str_experiment} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -${str_accessions} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -ml Singularity -export PASAHOME="/usr/local/src/PASApipeline" - -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.stderr.log" >&2) - - -# ========================================================= -${str_experiment} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -${str_accessions} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -ml Singularity -export PASAHOME="/usr/local/src/PASApipeline" - -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.stderr.log" >&2) - - -# ========================================================= -${str_experiment} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local -${str_accessions} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -ml Singularity -export PASAHOME="/usr/local/src/PASApipeline" - -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.stderr.log" >&2) - - -# ========================================================= -${str_experiment} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -${str_accessions} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -ml Singularity -export PASAHOME="/usr/local/src/PASApipeline" - -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.stderr.log" >&2) - - -# ========================================================= -${str_experiment} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -${str_accessions} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -ml Singularity -export PASAHOME="/usr/local/src/PASApipeline" - -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5535680" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "1" \ - -c "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.stderr.log" >&2) -``` -
-
- - -##### Run the `echo` test script (`SLURM`) -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -for i in "${!info_tx_db[@]}"; do - str_experiment="${i}" - str_accessions="$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" - - echo "# =========================================================" - echo "\${str_experiment} is ${str_experiment}" - echo "\${str_accessions} is ${str_accessions}" - echo "" - - sbatch "./sh_err_out/${s_name_echo}" "${str_experiment}" "${str_accessions}" - echo "" - echo "" -done - -# Check most recent stderr and stdout logs -cd sh_err_out/err_out && .,f - -# Spot checks -head -50 echo_submit_launch-PASA-pipeline.5582262.out.txt && echo "" -head -50 echo_submit_launch-PASA-pipeline.5582259.out.txt && echo "" -cd - -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 -``` - -
-Relevant results of .,f printed to terminal - -```txt --rw-rw---- 1 kalavatt 0 Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582261.err.txt --rw-rw---- 1 kalavatt 0 Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582262.err.txt --rw-rw---- 1 kalavatt 0 Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582253.err.txt -drwxrws--- 2 kalavatt 58K Dec 12 09:26 ./ --rw-rw---- 1 kalavatt 0 Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582260.err.txt --rw-rw---- 1 kalavatt 0 Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582256.err.txt --rw-rw---- 1 kalavatt 0 Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582258.err.txt --rw-rw---- 1 kalavatt 0 Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582257.err.txt --rw-rw---- 1 kalavatt 0 Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582259.err.txt --rw-rw---- 1 kalavatt 0 Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582254.err.txt --rw-rw---- 1 kalavatt 1.3K Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582262.out.txt --rw-rw---- 1 kalavatt 1.4K Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582261.out.txt --rw-rw---- 1 kalavatt 1.4K Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582253.out.txt --rw-rw---- 1 kalavatt 1.4K Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582256.out.txt --rw-rw---- 1 kalavatt 1.3K Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582257.out.txt --rw-rw---- 1 kalavatt 1.4K Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582254.out.txt --rw-rw---- 1 kalavatt 1.4K Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582259.out.txt --rw-rw---- 1 kalavatt 1.3K Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582260.out.txt --rw-rw---- 1 kalavatt 1.4K Dec 12 09:26 echo_submit_launch-PASA-pipeline.5582258.out.txt -``` -
-
- -
-Results of first spot check - -```txt -ml Singularity -export PASAHOME="/usr/local/src/PASApipeline" - -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5582262" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "8" \ - -c "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.stderr.log" >&2) -``` -
-
- -
-Results of second spot check - -```txt -ml Singularity -export PASAHOME="/usr/local/src/PASApipeline" - -singularity run \ - --bind "/home/kalavatt" \ - --bind "/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/5582259" \ - ~/singularity-docker-etc/PASA.sif \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl \ - --CPU "8" \ - -c "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.align_assembly.config" \ - -C \ - -R \ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \ - -I 1002 \ - -t "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta.clean" \ - -T \ - -u "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.transcripts.fasta" \ - --TDN "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions" \ - --transcribed_is_aligned_orient \ - --stringent_alignment_overlap 30.0 \ - --ALIGNERS blat,gmap,minimap2 \ - 1> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.stdout.log") \ - 2> >(tee -a "trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.stderr.log" >&2) -``` -
-
- - -#### Set up a job submission script -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -s_name="submit_launch-PASA-pipeline.sh" -threads=8 - -if [[ -f "./sh_err_out/${s_name}" ]]; then - rm "./sh_err_out/${s_name}" -fi -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_experiment="\${1}" -str_accessions="\${2}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "files_PASA/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -# echo "All files in the working directory with extension .fasta:" -# ls -lhaFG *.fasta -# echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108/DNA" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - ${HOME}/singularity-docker-etc/PASA.sif \\ - \${PASAHOME}/Launch_PASA_pipeline.pl \\ - --CPU "\${SLURM_CPUS_ON_NODE}" \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - --stringent_alignment_overlap 30.0 \\ - --ALIGNERS blat,gmap,minimap2 \\ - 1> >(tee -a "\${str_experiment}.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.stderr.log" >&2) - -script -# vi "sh_err_out/${s_name}" # :q -``` - - -#### Run the job submission script -`#DEKHO` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Pick element 0, then try a trial job submission; cancel the job after you -#+ know it's working in order to submit jobs via looping over the full -#+ associative array - -# for i in "trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd"; do -for i in "${!info_tx_db[@]}"; do - str_experiment="${i}" - str_accessions="$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" - - echo "# =========================================================" - echo "- \${str_experiment} is ${str_experiment}" - echo "- \${str_accessions} is ${str_accessions}" - echo "" - - sbatch "sh_err_out/${s_name}" "${str_experiment}" "${str_accessions}" - sleep 0.25 - echo "" - echo "" -done -``` - -
-Relevant results of .,f in sh_err_out/err_out - -```txt --rw-rw---- 1 kalavatt 1.4K Dec 12 09:59 submit_launch-PASA-pipeline.5583197.out.txt --rw-rw---- 1 kalavatt 2.0K Dec 12 09:59 submit_launch-PASA-pipeline.5583197.err.txt --rw-rw---- 1 kalavatt 0 Dec 12 10:02 submit_launch-PASA-pipeline.5583200.out.txt --rw-rw---- 1 kalavatt 2.0K Dec 12 10:02 submit_launch-PASA-pipeline.5583200.err.txt --rw-rw---- 1 kalavatt 0 Dec 12 10:17 submit_launch-PASA-pipeline.5583306.out.txt --rw-rw---- 1 kalavatt 1.1K Dec 12 10:17 submit_launch-PASA-pipeline.5583306.err.txt --rw-rw---- 1 kalavatt 0 Dec 12 10:27 submit_launch-PASA-pipeline.5583309.out.txt --rw-rw---- 1 kalavatt 1.5K Dec 12 10:27 submit_launch-PASA-pipeline.5583309.err.txt --rw-rw---- 1 kalavatt 0 Dec 12 10:34 submit_launch-PASA-pipeline.5583313.out.txt --rw-rw---- 1 kalavatt 1.6K Dec 12 10:34 submit_launch-PASA-pipeline.5583313.err.txt --rw-rw---- 1 kalavatt 0 Dec 12 10:39 submit_launch-PASA-pipeline.5584659.out.txt --rw-rw---- 1 kalavatt 1.5K Dec 12 10:39 submit_launch-PASA-pipeline.5584659.err.txt --rw-rw---- 1 kalavatt 165 Dec 12 10:40 submit_launch-PASA-pipeline.5585068.out.txt --rw-rw---- 1 kalavatt 1.6K Dec 12 10:40 submit_launch-PASA-pipeline.5585068.err.txt --rw-rw---- 1 kalavatt 2.6K Dec 12 10:44 submit_launch-PASA-pipeline.5585328.out.txt --rw-rw---- 1 kalavatt 1.5K Dec 12 10:44 submit_launch-PASA-pipeline.5585328.err.txt -``` -
-
- -I rewrote the submission script in [the above code chunk](#set-up-a-job-submission-script) in order to address the errors (and other forms of information) in these particular `stderr` and `stdout` `.txt` files - -Thus, the preceding `echo` tests were not useful for preparing the actual submission scripts `#IMPORTANT` Don't do those kinds of `echo` tests moving forward - -
-Successful job submissions: Messages printed to terminal - -```txt -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -Submitted batch job 5585583 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -Submitted batch job 5585584 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -Submitted batch job 5585585 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5585586 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -Submitted batch job 5585587 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.accessions - -Submitted batch job 5585588 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5585589 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions - -Submitted batch job 5585590 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -- ${str_accessions} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5585591 -``` -
-
- - -###### Checking on things -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -# Check on the job submissions -skal - -# Check most recent stderr and stdout logs -cd sh_err_out/err_out && .,f -head -100 "$(ls -Arts | tail -1 | cut -d ' ' -f 6-)" # :q -cd - - -# Check on how work is going in the directory of the last job submission -cd "files_PASA/${i}" && .,f -cd - -``` -
-
- - -## Run `PASA` `build_comprehensive_transcriptome.dbi` - -### Set up a job submission script for `PASA` `build_comprehensive_transcriptome.dbi` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -s_name_next="submit_build-comprehensive-transcriptome.sh" -threads=1 - -if [[ -f "./sh_err_out/${s_name_next}" ]]; then - rm "./sh_err_out/${s_name_next}" -fi -cat << script > "./sh_err_out/${s_name_next}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name_next%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name_next%.sh}.%J.out.txt - -# ${s_name_next} -# KA -# $(date '+%Y-%m%d') - -str_experiment="\${1}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "files_PASA/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108/DNA" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.stderr.log" >&2) - -script -# vi "sh_err_out/${s_name_next}" # :q -``` - - -### Run the job submission script for `PASA` `build_comprehensive_transcriptome.dbi` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -for i in "${!info_tx_db[@]}"; do - str_experiment="${i}" - - echo "# =========================================================" - echo "- \${str_experiment} is ${str_experiment}" - echo "" - - echo ""sh_err_out/${s_name_next}" "${str_experiment}" "${str_accessions}"" - echo "" - sbatch "sh_err_out/${s_name_next}" "${str_experiment}" "${str_accessions}" - sleep 0.25 - echo "" - echo "" -done -``` - -
-Job submission scripts printed to terminal - -```txt -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -sh_err_out/submit_launch-PASA-pipeline.sh trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5599216 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -sh_err_out/submit_launch-PASA-pipeline.sh trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5599217 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -sh_err_out/submit_launch-PASA-pipeline.sh trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5599218 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - -sh_err_out/submit_launch-PASA-pipeline.sh trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5599219 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - -sh_err_out/submit_launch-PASA-pipeline.sh trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5599220 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - -sh_err_out/submit_launch-PASA-pipeline.sh trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5599221 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local - -sh_err_out/submit_launch-PASA-pipeline.sh trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5599222 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -sh_err_out/submit_launch-PASA-pipeline.sh trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5599223 - - -# ========================================================= -- ${str_experiment} is trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local - -sh_err_out/submit_launch-PASA-pipeline.sh trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions - -Submitted batch job 5599224 -``` -
-
-
- - -## Miscellaneous -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -``` -
-
- - -## Miscellaneous -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -``` -
-
- - -## Miscellaneous -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -``` -
-
- - -## Miscellaneous -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -``` -
-
- - - -## Build the script for submitting... - -### Run `echo` tests -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -script_name="echo_submit_PASA.sh" -threads=6 - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -left_1="\${1}" -left_2="\${2}" -right_1="\${3}" -right_2="\${4}" -out="\${5}" - -# module load Singularity/3.5.3 - -parallel --header : --colsep " " -k -j 1 echo \\ - 'singularity run \\ - --no-home \\ - --bind {d_exp} \\ - --bind {d_scr} \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory {j_mem} \\ - --CPU {j_cor} \\ - --SS_lib_type FR \\ - --seqType fq \\ - --left {left_1},{left_2} \\ - --right {right_1},{right_2} \\ - --jaccard_clip \\ - --output {t_out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200' \\ -::: d_exp "\$(pwd)" \\ -::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \\ -::: j_mem "50G" \\ -::: j_cor "\${SLURM_CPUS_ON_NODE}" \\ -::: left_1 "\${left_1}" \\ -:::+ left_2 "\${left_2}" \\ -:::+ right_1 "\${right_1}" \\ -:::+ right_2 "\${right_2}" \\ -:::+ t_out "\${out}" -script -# vi "./sh_err_out/${script_name}" # :q - - -# Running the above... ------------------------------------------------------- -# echoTest "${f_in[@]}" -# echoTest "${d_in[@]}" -for i in $(seq 0 $(echo "${#f_in[@]}" - 1 | bc)); do - # i=1 - d_f_5781_r1="${d_in[$i]}/5781_${f_in[$i]}.1.fq.gz" - d_f_5782_r1="${d_in[$i]}/5782_${f_in[$i]}.1.fq.gz" - d_f_5781_r2="${d_in[$i]}/5781_${f_in[$i]}.2.fq.gz" - d_f_5782_r2="${d_in[$i]}/5782_${f_in[$i]}.2.fq.gz" - echo "# =========================================================" - echo "# Establishing infiles... ----------------------------------" - echo " left_1 ${d_f_5781_r1}" - echo " left_2 ${d_f_5782_r1}" - echo " right_1 ${d_f_5781_r2}" - echo " right_2 ${d_f_5782_r2}" - echo "" - - d_base="files_Trinity_genome-free/$(echo "${d_f_5781_r1}" | cut -d "/" -f 1)" # echo "${d_base}" - pre="trinity_5781-5782_$(\ - echo $(basename "${d_f_5781_r1}" ".Aligned.sortedByCoord.out.sc_all.1.fq.gz") \ - | cut -d $'_' -f 2- \ - )" - t_out="${d_base}/${pre}" - echo "# Establishing outfile... ---------------------------------" - echo " d_base ${d_base}" - echo " pre ${pre}" - echo " t_out ${t_out}" - echo "" - - intron="1002" - echo "# Setting intron parameter --------------------------------" - echo " intron ${intron}" - echo "" - - echo "# Comparing in and out... ---------------------------------" - echo " ${f_in[$i]}" - echo " ${t_out}" - - echo "# =========================================================" - echo "" - - [[ -d "${t_out}" ]] || mkdir -p "${t_out}" - echo "" - - #TODO 1/2 Could add some kind of check to make sure that left_* include - #TODO 2/2 read 1, right_* include read 2 - bash "./sh_err_out/${script_name}" \ - "${d_f_5781_r1}" \ - "${d_f_5782_r1}" \ - "${d_f_5781_r2}" \ - "${d_f_5782_r2}" \ - "${t_out}" - - echo "" - echo "" -done -``` diff --git a/results/2022-1201/tutorial_Singularity.md b/results/2022-1201/tutorial_Singularity.md deleted file mode 100644 index bdda991..0000000 --- a/results/2022-1201/tutorial_Singularity.md +++ /dev/null @@ -1,786 +0,0 @@ - -`tutorial_Singularity.md` -
-
- -
-Table of Contents - - -1. [Learning to use `Singularity` \(2022-1123\)](#learning-to-use-singularity-2022-1123) - 1. [Notes from FHCC Bioinformatics' *"Using `Singularity` Containers"*](#notes-from-fhcc-bioinformatics-using-singularity-containers) - 1. [Introduction](#introduction) - 1. [Using `Singularity`](#using-singularity) - 1. [Using Docker Containers with Singularity](#using-docker-containers-with-singularity) - 1. [Example: Convert and run latest `R` `Docker` container with `Singularity`](#example-convert-and-run-latest-r-docker-container-with-singularity) - 1. [Container Customization](#container-customization) - 1. [Example: Add `R` libraries to the base container](#example-add-r-libraries-to-the-base-container) - 1. [Build](#build) - 1. [Set up a Sylabs account](#set-up-a-sylabs-account) - 1. [*Try building again*](#try-building-again) - 1. [Verify](#verify) - 1. [Access to Storage](#access-to-storage) - 1. [Example: Bind Local File Systems](#example-bind-local-file-systems) - 1. [Create Mount Points](#create-mount-points) - 1. [Rebuild](#rebuild) - 1. [Run with Bind](#run-with-bind) - 1. [Verify](#verify-1) - 1. [The Build Environment](#the-build-environment) - 1. [The Image Cache](#the-image-cache) - 1. [Build Temporary Files](#build-temporary-files) - 1. [Related FHCC Bioinformatics links](#related-fhcc-bioinformatics-links) - - -
-
- - -## Learning to use `Singularity` (2022-1123) -...in order to use `Trinity` and `PASA`, etc. - - -### Notes from FHCC Bioinformatics' *"Using `Singularity` Containers"* -- [Link to FHCC Bioinformatics' *"Using `Singularity` Containers"*](https://sciwiki.fredhutch.org/compdemos/Singularity/) -- Below, notes from me are in *italicized text* - - -### Introduction -¶1 -... - -¶2 -`Singularity` allows us to run containers—including `Docker` containers—on our shared systems. `Docker` requires a number of administrative privileges which makes it unusable in shared multi-user environments with networked storage. `Singularity` remedies these problems allowing individual, non-root, users to run containers. - -¶3 -... - - - -### Using `Singularity` -¶1 -`Singularity` is available on the `rhino` and `gizmo` compute hosts. Please use a `gizmo` node if your task will be computationally intensive. `Singularity` containers can be run interactively (via `grabnode`) and in batch processing. - -¶2 -... -```bash -#EXAMPLEFROMTUTORIAL -ml Singularity -``` - -¶3 -Use `ml spider` to see available versions *(e.g., `ml spider Singularity`)*. Sylabs provides a library of built images that can be used directly: -```bash -#EXAMPLEFROMTUTORIAL -singularity pull --arch amd64 library://sylabsed/examples/lolcow:latest -``` - -
-Code: Test it out - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -pwd -# /home/kalavatt - -ml Singularity - -singularity pull --arch amd64 library://sylabsed/examples/lolcow:latest -# 79.91 MiB / 79.91 MiB [============================================================================================================] 100.00% 702.84 KiB/s 1m56s -# WARNING: unable to verify container: lolcow_latest.sif -# WARNING: Skipping container verification - -singularity run ./lolcow_latest.sif -# / A Tale of Two Cities LITE(tm) \ -# | | -# | -- by Charles Dickens | -# | | -# | A man in love with a girl who loves | -# | another man who looks just | -# | | -# | like him has his head chopped off in | -# | France because of a mean | -# | | -# | lady who knits. | -# | | -# | Crime and Punishment LITE(tm) | -# | | -# | -- by Fyodor Dostoevski | -# | | -# | A man sends a nasty letter to a | -# | pawnbroker, but later | -# | | -# | feels guilty and apologizes. | -# | | -# | The Odyssey LITE(tm) | -# | | -# | -- by Homer | -# | | -# | After working late, a valiant warrior | -# \ gets lost on his way home. / -# --------------------------------------- -# \ ^__^ -# \ (oo)\_______ -# (__)\ )\/\ -# ||----w | -# || || - -ls -lhaFG -# total 108M -# drwxr-x--- 17 kalavatt 800 Nov 23 07:45 ./ -# drwxr-xr-x 5 root 0 Nov 23 07:43 ../ -# -rw-rw---- 1 kalavatt 4.0K Nov 21 12:33 .bash_aliases -# -rw-rw---- 1 kalavatt 3.2K Nov 20 13:21 .bash_functions -# -rw------- 1 kalavatt 564K Nov 23 07:45 .bash_history -# -rw-rw---- 1 kalavatt 308 Oct 20 11:18 .bash_profile -# -rw-rw---- 1 kalavatt 6.0K Nov 7 15:05 .bashrc -# drwxrwx--- 9 kalavatt 6.4K Oct 5 17:22 bbmap/ -# drwx------ 4 kalavatt 87 Oct 20 11:42 .cache/ -# drwxr-x--- 2 kalavatt 34 Oct 20 10:28 .conda/ -# drwxrwx--- 5 kalavatt 75 Oct 28 15:14 .config/ -# drwxrwx--- 3 kalavatt 23 Oct 20 11:42 Downloads/ -# drwxrwx--- 10 kalavatt 335 Nov 7 13:14 genomes/ -# -rw-rw---- 1 kalavatt 88 Oct 21 14:04 .gitconfig -# drwx------ 3 kalavatt 35 Oct 17 10:57 .gnupg/ -# drwxrwx--- 3 kalavatt 23 Nov 7 15:06 .java/ -# drwx------ 7 kalavatt 113 Nov 1 09:09 .local/ -# -rwxr-x--- 1 kalavatt 80M Nov 23 07:37 lolcow_latest.sif* -# drwxr-x--- 20 kalavatt 570 Nov 22 07:44 miniconda3/ -# drwxr-x--- 15 kalavatt 524 Oct 20 09:57 .oh-my-bash/ -# drwxrwx--- 2 kalavatt 44 Nov 1 12:54 .oracle_jre_usage/ -# -rw-r----- 1 kalavatt 17 Nov 17 08:49 .osh-update -# -rw-rw---- 1 kalavatt 726 Nov 1 09:20 picardmetrics.conf -# -rw-r----- 1 kalavatt 0 Nov 23 07:35 .sdirs -# drwx------ 3 kalavatt 23 Nov 23 07:35 .singularity/ -# drwxrwx--- 6 kalavatt 148 Nov 1 09:09 src/ -# drwx------ 2 kalavatt 62 Oct 20 13:03 .ssh/ -# lrwxrwxrwx 1 root 37 Oct 17 10:44 tsukiyamalab -> /fh/fast/tsukiyama_t/grp/tsukiyamalab/ -# -rw------- 1 kalavatt 46K Nov 22 14:54 .viminfo -# -rw-rw---- 1 kalavatt 215 Oct 20 10:33 .wget-hsts -# -rw------- 1 kalavatt 50 Nov 17 15:27 .Xauthority - -#NOTE lolcow_latest.sif is saved to "$(pwd)" -``` -
-
- -¶4 -The error about container verification is not necessarily critical—if you would like to do a bit-by-bit validation of the download, [additional steps](https://sylabs.io/guides/3.5/user-guide/signNverify.html) are required. - - -### Using Docker Containers with Singularity -¶1 -As indicated earlier, `Singularity` can run `Docker` container images. However, `Docker` container images must first be converted to be usable by `Singularity`. - -¶2 -The conversion step is only necessary the first time you convert a `Docker` container to a `Singularity` container or when you want to update your Singularity container (e.g., to a newer version of a `Docker` container). - - -#### Example: Convert and run latest `R` `Docker` container with `Singularity` -¶1 -... - -
-Code: Try it out - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -pwd -# /home/kalavatt - -ml Singularity - -singularity build r-base-latest.sif docker://r-base -# INFO: Starting build... -# WARN[0000] "/run/user/76178" directory set by $XDG_RUNTIME_DIR does not exist. Either create the directory or unset $XDG_RUNTIME_DIR.: stat /run/user/76178: no such file or directory: Trying to pull image in the event that it is a public image. -# WARN[0000] "/run/user/76178" directory set by $XDG_RUNTIME_DIR does not exist. Either create the directory or unset $XDG_RUNTIME_DIR.: stat /run/user/76178: no such file or directory: Trying to pull image in the event that it is a public image. -# Getting image source signatures -# Copying blob ebbe46658ae1 done -# Copying blob ae8780930e7e done -# Copying blob 48f11b798771 done -# Copying blob ced6bc7d0fb6 done -# Copying blob b6e2154a522a done -# Copying blob 36a417257f63 done -# Copying config 935885ce10 done -# Writing manifest to image destination -# Storing signatures -# 2022/11/23 07:47:41 info unpack layer: sha256:ebbe46658ae1eddd748e3222cbc9dd7109f9fd7f279a4b2f9d6a32d0a58b4c16 -# 2022/11/23 07:47:42 info unpack layer: sha256:ae8780930e7e7b18116589a863916682a85c45bec3c738dab17f8740830988b5 -# 2022/11/23 07:47:42 info unpack layer: sha256:48f11b798771daf119baa7f2f3d5b9c4363b0aec5d12e488fbb2e07a0cf0be79 -# 2022/11/23 07:47:43 info unpack layer: sha256:ced6bc7d0fb644dbcbeecc374d4904ae5df8f303707c30aa60514e3d929fd644 -# 2022/11/23 07:47:43 info unpack layer: sha256:b6e2154a522a29fd10fe63922ee826f4d42e1e474ad08bc2f8c71e811e7f0127 -# 2022/11/23 07:47:43 info unpack layer: sha256:36a417257f633cd58de6c3b59ec8c55c5bb04296fa387da3daa9cc1cba037116 -# INFO: Creating SIF file... -# INFO: Build complete: r-base-latest.sif - -#NOTE It ran for 2-3 minutes before completing - -singularity exec r-base-latest.sif R -# R version 4.2.2 (2022-10-31) -- "Innocent and Trusting" -# Copyright (C) 2022 The R Foundation for Statistical Computing -# Platform: x86_64-pc-linux-gnu (64-bit) -# -# R is free software and comes with ABSOLUTELY NO WARRANTY. -# You are welcome to redistribute it under certain conditions. -# Type 'license()' or 'licence()' for distribution details. -# -# Natural language support but running in an English locale -# -# R is a collaborative project with many contributors. -# Type 'contributors()' for more information and -# 'citation()' on how to cite R or R packages in publications. -# -# Type 'demo()' for some demos, 'help()' for on-line help, or -# 'help.start()' for an HTML browser interface to help. -# Type 'q()' to quit R. -# -# > - -getwd() -# [1] "/home/kalavatt" - -quit() -# Save workspace image? [y/n/c]: n - -if [[ -f test-script.R ]]; then rm test-script.R; fi -touch test-script.R -echo -e '#!/usr/bin Rscript \n' >> test-script.R -echo 'getwd()' >> test-script.R -echo 'list.files()' >> test-script.R -# vi test-script.R - -singularity exec r-base-latest.sif Rscript test-script.R -# [1] "/home/kalavatt" -# [1] "bbmap" "Downloads" "genomes" -# [4] "lolcow_latest.sif" "miniconda3" "picardmetrics.conf" -# [7] "r-base-latest.sif" "src" "test-script.R" -# [10] "tsukiyamalab" -if [[ -f test-script.R ]]; then rm test-script.R; fi -``` -
-
- - -### Container Customization -¶1 -Containers can be customized by using a base container image then adding desired changes via a "definition file" that has necessary steps for modifying the base container. - -¶2 -Root access is typically required to build `Singularity` containers. Sylabs' remote builder provides an option to build your container in Sylabs' sandbox cloud infrastructure. Once the container finishes building, it will be automatically downloaded to your working directory where it can be run. - -¶3 -To use the remote builder option in `Singularity` you need a Sylabs account and key. The steps to set up remote builder can be found [here](https://sylabs.io/guides/3.5/user-guide/endpoint.html). - -¶4 -You will need to generate a new key every 30 days when using Sylabs' remote builder option. - - - - -#### Example: Add `R` libraries to the base container -¶1 -In this example, we are going to build a more complex `Singularity` container using the latest `R` `Docker` image. To the base container, we will add additional `R` modules using a `Singularity` definition file and then build using Sylabs’ tools. - -¶2 -... - -
-Code: Try it out - -```bash -#!/bin/bash -#DONTRUN - -# grabnode # Lowest and default settings -# -# pwd -# # /home/kalavatt -# -# ml Singularity -# -# singularity build r-base-latest.sif docker://r-base - -def="my.r.singularity.build.def" - -if [[ -f "${def}" ]]; then rm "${def}"; fi -touch "${def}" - -echo -e \ - 'BootStrap: docker\nFrom: r-base\n' \ - >> "${def}" -echo -e \ - "%post\nR --no-echo -e 'install.packages(\"devtools\", repos=\"https://cloud.r-project.org/\")'" \ - >> "${def}" -# # vi "${def}" -# BootStrap: docker -# From: r-base -# -# %post -# R --no-echo -e 'install.packages("devtools", repos="https://cloud.r-project.org/")' -``` -
-
- -¶3 -This file indicates that `Docker` is used to build the container from a `Docker` image named `r-base`. The `%post` section defines the steps we want to take to modify that original container—in this case, using `R` to install the `devtools` packages. - -¶4 -More information about `Singularity` definition files is available [here](https://sylabs.io/guides/3.6/user-guide/definition_files.html). - - -##### Build -¶5 -... -```bash -#CONTINUE -singularity build --remote my_r_container.sif my.r.singularity.build.def -# FATAL: Unable to submit build job: no authentication token, log in with `singularity remote login` -``` - - -##### Set up a Sylabs account -The following is not part of the FHCC tutorial and is instead text and *my notes* on material at [this page](https://docs.sylabs.io/guides/3.5/user-guide/endpoint.html). -1. Go to: https://cloud.sylabs.io/ -2. Click "Sign in to Sylabs" and follow the sign in steps. - - Linked Sylabs to my [GitHub account](https://github.com/kalavattam) - - Sylabs username is `kalavattam` -3. ~~Click on your login ID (same and updated button as the sign-in one).~~ Log in. -4. Select “Access Tokens” from the ~~drop down~~ menu. -5. Enter a name for your new access token, such as “test token” - - Named it "`test-token`" -6. Click the "Create Access Token" button. - - The following was printed to the [browser]() -7. Click "Copy Token to Clipboard" ~~from the "New API Token" page~~. - - Also, downloaded the token to `~/Downloads/_Kris` as `sylabs-token_test-token.txt` -8. Run `singularity remote login` and [paste the access token at the prompt](). - -```bash -#CONTINUE -singularity remote login # Paste token at prompt 'API Key:' -# INFO: Authenticating with default remote. -# Generate an API Key at https://cloud.sylabs.io/auth/tokens, and paste here: -# API Key: -# INFO: API Key Verified! -``` - - -##### *Try building again* - -
-Code: Try building again - -```bash -#CONTINUE -singularity build --remote my_r_container.sif my.r.singularity.build.def -#NOTE Building took >10 minutes - -# ... # (A massive amount of text...) -# ERROR: dependencies ‘usethis’, ‘pkgdown’, ‘rcmdcheck’, ‘roxygen2’, ‘rversions’, ‘urlchecker’ are not available for package ‘devtools’ -# * removing ‘/usr/local/lib/R/site-library/devtools’ -# -# The downloaded source packages are in -# ‘/tmp/Rtmp6SudoW/downloaded_packages’ -# There were 17 warnings (use warnings() to see them) -# INFO: Creating SIF file... -# INFO: Build complete: /tmp/image-1862359741 -# INFO: Performing post-build operations -# INFO: Generating SBOM for /tmp/image-1862359741 -# INFO: Adding SBOM to SIF -# INFO: Calculating SIF image checksum -# INFO: Uploading image to library... -# WARNING: Skipping container verification -# INFO: Uploading 382403001 bytes -# INFO: Image uploaded successfully. - -#NOTE 1/3 Message was just hanging here, not providing a prompt and or exiting; -#NOTE 2/3 so, I input ^C after hitting ↵ once (besides making a newline, -#NOTE 3/3 nothing happened) - -# After inputting ^C, the following printed to terminal: -# Shutting down due to signal: interrupt -# INFO: Build complete: my_r_container.sif -``` -
-
- - -##### Verify -¶1 -Launch the `R` editor on our new `Singularity` container with the following command: ... And then check all of the user installed `R` packages with the following command: ... - -```bash -#CONTINUE -singularity exec my_r_container.sif R -# R version 4.2.2 (2022-10-31) -- "Innocent and Trusting" -# Copyright (C) 2022 The R Foundation for Statistical Computing -# Platform: x86_64-pc-linux-gnu (64-bit) -# -# R is free software and comes with ABSOLUTELY NO WARRANTY. -# You are welcome to redistribute it under certain conditions. -# Type 'license()' or 'licence()' for distribution details. -# -# Natural language support but running in an English locale -# -# R is a collaborative project with many contributors. -# Type 'contributors()' for more information and -# 'citation()' on how to cite R or R packages in publications. -# -# Type 'demo()' for some demos, 'help()' for on-line help, or -# 'help.start()' for an HTML browser interface to help. -# Type 'q()' to quit R. -# -# > -``` -```R -#CONTINUE -ip <- as.data.frame(installed.packages()[,c(1,3:4)]) -rownames(ip) <- NULL -ip <- ip[is.na(ip$Priority),1:2,drop=FALSE] -print(ip, row.names=FALSE) -``` -
-The following was printed to terminal: - -```txt - Package Version - askpass 1.1 - base64enc 0.1-3 - brew 1.0-8 - brio 1.1.3 - bslib 0.4.1 - cachem 1.0.6 - callr 3.7.3 - cli 3.4.1 - clipr 0.8.0 - commonmark 1.8.1 - cpp11 0.4.3 - crayon 1.5.2 - desc 1.4.2 - diffobj 0.3.5 - digest 0.6.30 - downlit 0.4.2 - ellipsis 0.3.2 - evaluate 0.18 - fansi 1.0.3 - fastmap 1.1.0 - fontawesome 0.4.0 - fs 1.5.2 - gitcreds 0.1.2 - glue 1.6.2 - highr 0.9 - htmltools 0.5.3 - htmlwidgets 1.5.4 - httpuv 1.6.6 - ini 0.3.1 - jquerylib 0.1.4 - jsonlite 1.8.3 - knitr 1.41 - later 1.3.0 - lifecycle 1.0.3 - magrittr 2.0.3 - memoise 2.0.1 - mime 0.12 - miniUI 0.1.1.1 - pillar 1.8.1 - pkgbuild 1.3.1 - pkgconfig 2.0.3 - pkgload 1.3.2 - praise 1.0.0 - prettyunits 1.1.1 - processx 3.8.0 - profvis 0.3.7 - promises 1.2.0.1 - ps 1.7.2 - purrr 0.3.5 - R6 2.5.1 - rappdirs 0.3.3 - Rcpp 1.0.9 - rematch2 2.1.2 - remotes 2.4.2 - rlang 1.0.6 - rmarkdown 2.18 - rprojroot 2.0.3 - rstudioapi 0.14 - sass 0.4.3 - sessioninfo 1.2.2 - shiny 1.7.3 - sourcetools 0.1.7 - stringi 1.7.8 - stringr 1.4.1 - sys 3.4.1 - testthat 3.1.5 - tibble 3.1.8 - tinytex 0.42 - utf8 1.2.2 - vctrs 0.5.1 - waldo 0.4.0 - whisker 0.4 - withr 2.5.0 - xfun 0.35 - xopen 1.0.0 - xtable 1.8-4 - yaml 2.3.6 - zip 2.2.2 - docopt 0.7.1 - littler 0.3.16 -``` -
- -```R -#CONTINUE -quit() -# Save workspace image? [y/n/c]: n -``` - -¶2 -We can now see all of the newly installed `R` libraries. There are two `R` libraries in the base `R` `Docker` container—now you should see many more than that. - - -### Access to Storage -¶1 -Storage on the host where you are running the container can be made available via a bind command into the container. Many local paths are bound into the container by default. For example, the current working directory and your home are available in the container by default. - -¶2 -When I indicate "local path", I am including network paths mounted locally—so even though fast and scratch are not technically local to the host, they appear local. - -¶3 -If you need access to other storage paths (e.g., `/fh/scratch`, `/fh/fast`) you will need to provide mount points (directories) in the container and explicitly bind paths to those mount points as part of running the container. Note that your HutchNet ID will need permissions to this storage, but root privileges are not necessary. - - -#### Example: Bind Local File Systems -¶4 -In this example, we'll make the biodata files maintained by `Shared Resources` available in our container on the path `/mnt/data`. - - -##### Create Mount Points -¶5 -Modify the definition file we created earlier (`my.r.singularity.build.def`), adding a command to the `%post` section to create the directory where we will mount biodata: -```txt -BootStrap: docker -From: r-base - -%post -R --no-echo -e 'install.packages("devtools", repos="https://cloud.r-project.org/")' -mkdir -p /mnt/data -``` -```bash -#CONTINUE -ls -lhaFG my.r.singularity.build.def -# -rw-rw---- 1 kalavatt 122 Nov 23 08:14 my.r.singularity.build.def - -echo "mkdir -p /mnt/data" >> my.r.singularity.build.def -vi my.r.singularity.build.def # Looks the same as above -``` - -##### Rebuild -¶6 -Rebuild the container as above: - -```bash -#CONTINUE -singularity build --remote my_r_container.sif my.r.singularity.build.def -# Build target already exists. Do you want to overwrite? [N/y] y - -# INFO: Starting build... -# INFO: Setting maximum build duration to 1h0m0s -# INFO: Remote "cloud.sylabs.io" added. -# INFO: Access Token Verified! -# INFO: Token stored in /root/.singularity/remote.yaml -# INFO: Remote "cloud.sylabs.io" now in use. -# INFO: Starting build... -# Getting image source signatures -# Copying blob sha256:36a417257f633cd58de6c3b59ec8c55c5bb04296fa387da3daa9cc1cba037116 -# Copying blob sha256:ebbe46658ae1eddd748e3222cbc9dd7109f9fd7f279a4b2f9d6a32d0a58b4c16 -# Copying blob sha256:48f11b798771daf119baa7f2f3d5b9c4363b0aec5d12e488fbb2e07a0cf0be79 -# Copying blob sha256:ced6bc7d0fb644dbcbeecc374d4904ae5df8f303707c30aa60514e3d929fd644 -# Copying blob sha256:b6e2154a522a29fd10fe63922ee826f4d42e1e474ad08bc2f8c71e811e7f0127 -# Copying blob sha256:ae8780930e7e7b18116589a863916682a85c45bec3c738dab17f8740830988b5 -# Copying config sha256:935885ce101110cb4f94cbce7784d9536f3d26ff65e4017d141f6e0b80ede0f6 -# Writing manifest to image destination -# Storing signatures -# 2022/11/23 17:20:21 info unpack layer: sha256:ebbe46658ae1eddd748e3222cbc9dd7109f9fd7f279a4b2f9d6a32d0a58b4c16 -# 2022/11/23 17:20:24 info unpack layer: sha256:ae8780930e7e7b18116589a863916682a85c45bec3c738dab17f8740830988b5 -# 2022/11/23 17:20:24 info unpack layer: sha256:48f11b798771daf119baa7f2f3d5b9c4363b0aec5d12e488fbb2e07a0cf0be79 -# 2022/11/23 17:20:24 info unpack layer: sha256:ced6bc7d0fb644dbcbeecc374d4904ae5df8f303707c30aa60514e3d929fd644 -# 2022/11/23 17:20:24 info unpack layer: sha256:b6e2154a522a29fd10fe63922ee826f4d42e1e474ad08bc2f8c71e811e7f0127 -# 2022/11/23 17:20:24 info unpack layer: sha256:36a417257f633cd58de6c3b59ec8c55c5bb04296fa387da3daa9cc1cba037116 -# INFO: Running post scriptlet -# ... # (Mountains of text printed to screen) -# ... # (Text is mostly from compiling/gcc) -# ... -# ERROR: dependencies ‘usethis’, ‘pkgdown’, ‘rcmdcheck’, ‘roxygen2’, ‘rversions’, ‘urlchecker’ are not available for package ‘devtools’ -# * removing ‘/usr/local/lib/R/site-library/devtools’ -# -# The downloaded source packages are in -# ‘/tmp/RtmpCkV9WN/downloaded_packages’ -# There were 17 warnings (use warnings() to see them) -# + mkdir -p /mnt/data -# INFO: Creating SIF file... -# INFO: Build complete: /tmp/image-294748900 -# INFO: Performing post-build operations -# INFO: Generating SBOM for /tmp/image-294748900 -# INFO: Adding SBOM to SIF -# INFO: Calculating SIF image checksum -# INFO: Uploading image to library... -# WARNING: Skipping container verification -# INFO: Uploading 382403000 bytes -# INFO: Image uploaded successfully. -# Shutting down due to signal: interrupt -# -# -# -# ^CINFO: Build complete: my_r_container.sif -``` - -*After inputting `^C` and waiting several minutes, still no exit, so input `↵ ↵ ↵ ^C`; was still left waiting... It completed after some 10 minutes; seems you just have to wait* - - -##### Run with Bind -Once the container has been rebuilt, we just need to run the container, adding additional instructions to bind the local path (on the host where you are running `Singularity`) to the directory we created. - -There are two ways to bind these paths into the container—on the command line: `$ singularity exec --bind /shared/biodata:/mnt/data my_r_container.sif R` -...or via environment variables: - -```bash -#EXAMPLEFROMTUTORIAL -export SINGULARITY_BIND=/shared/biodata:/mnt/data -singularity exec my_r_container.sif R -``` - - -##### Verify -You can verify the bind of those paths with shell. Start a shell in the container and run: - -```bash -#CONTINUE -export SINGULARITY_BIND=/shared/biodata:/mnt/data -singularity shell my_r_container.sif -# Have a new kind of prompt now: Singularity> - -ls /mnt/data -# example_data gmap-gsnap humandb microbiome ncbi-blast ngs seq tmp - -t="/mnt/data" -ls -lhaFG $t -# total 0 -# drwxr-xr-x 11 root 0 Sep 10 16:02 ./ -# drwxr-xr-x 3 root 27 Nov 23 09:33 ../ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 example_data/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 gmap-gsnap/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 humandb/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 microbiome/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 ncbi-blast/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 ngs/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 reference/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 seq/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 tmp - -cd $t/example_data -pwd -/mnt/data/example_data - -ls -lhaFG -# total 160K -# drwxrwsr-x 4 59162 80 Apr 19 2021 ./ -# drwxr-xr-x 11 root 0 Sep 10 16:02 ../ -# drwxrwsr-- 4 59162 46 Mar 18 2021 data/ -# -rw-rw-r-- 1 59162 264 Mar 18 2021 README.md -# drwxrwsr-- 2 59162 0 Apr 19 2021 rna_seq_class/ - -# Interesting... -exit -# Loss of new prompt (Singularity> ) - -ls /mnt/data -# ls: cannot access '/mnt/data': No such file or directory - -singularity shell my_r_container.sif -ls /mnt/data -# example_data gmap-gsnap humandb microbiome ncbi-blast ngs reference seq tmp - -ls -# bbmap genomes miniconda3 my.r.singularity.build.def r-base-latest.sif tsukiyamalab -# Downloads lolcow_latest.sif my_r_container.sif picardmetrics.conf src - -exit - -echo $t -# -# Makes sense: variable 't' is not in the main shell; it was in the -#+ Singularity shell - -singularity shell my_r_container.sif -t="/mnt/data" -cd $t -ls -lhaFG -total 32K -# drwxr-xr-x 11 root 0 Sep 10 16:02 ./ -# drwxr-xr-x 3 root 27 Nov 23 09:33 ../ -# drwxrwsr-x 4 59162 80 Apr 19 2021 example_data/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 gmap-gsnap/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 humandb/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 microbiome/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 ncbi-blast/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 ngs/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 reference/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 seq/ -# dr-xr-xr-x 2 root 0 Sep 10 16:02 tmp/ - -cd seq -# total 320K -# drwxrwsr-x 4 37019 48 Sep 8 2016 ./ -# drwxr-xr-x 11 root 0 Sep 10 16:02 ../ -# drwxrwsr-x 3 37019 23K Jul 12 2021 blastdb/ -# drwxr-sr-x 3 37019 22 Feb 4 2016 Broad/ - -exit -``` - - -### The Build Environment - -#### The Image Cache -¶1 -Singularity caches data to speed future operations. By default, the cache is in your home directory in a directory named `.singularity`. This cache can be moved depending on your need—this can be controlled with the environment variable `SINGULARITY_CACHEDIR`. -```bash -#EXAMPLEFROMTUTORIAL -export SINGULARITY_CACHEDIR=${HOME}/.my_cachedir -singularity build my.r.singularity.build.def -``` - -¶2 -Note that you will need to set this environment variable every time you wish to use this cache path. - - -#### Build Temporary Files -¶1 -Two environment variables (and one command-line option) can be used to control where the build is done. This includes extraction of the various downloads and other build steps necessary to create the container. - -¶2 -The command line option `--tmpdir` takes precedence over the environment variables: -```bash -#EXAMPLEFROMTUTORIAL -singularity build --tmpdir=${HOME}/tmp my.r.singularity.build.def -``` - -¶3 -The environment variables `SINGULARITY_TMPDIR` and `TMPDIR` are used if the command line option isn't set. `SINGULARITY_TMPDIR` takes precedence over `TMPDIR`. - -IMPORTANT: If you set this build directory path to a location in the Scratch file system, you may encounter errors like "operation not permitted" when building the container. This file system does not support file operations used by some container builds (e.g., hard links and some attributes). - - -### Related FHCC Bioinformatics links -- [Using Docker at Fred Hutch](https://sciwiki.fredhutch.org/compdemos/Docker/) - + [On the SciComp Test Environment](https://sciwiki.fredhutch.org/compdemos/Docker/#on-the-scicomp-test-environment) - * "You can deploy your own docker machine on the `Proxmox` virtual test environment in *ca* 60 sec using the `prox` command. This environment uses multiple large memory machines (16 cores, 384GB memory each) which are re-purposed previous generation `Rhino` class machines." - + [Using pre-made Docker images with application stacks](https://sciwiki.fredhutch.org/compdemos/Docker/#using-pre-made-docker-images-with-application-stacks) - + [Create your own Docker image and put your software inside](https://sciwiki.fredhutch.org/compdemos/Docker/#create-your-own-docker-image-and-put-your-software-inside) -- [General information about Docker and its use at FHCC](https://sciwiki.fredhutch.org/scicomputing/compute_environments/#docker-containers) -- [Building Software Containers (Hutch Data Core)](https://sciwiki.fredhutch.org/hdc/hdc_building_containers/) diff --git a/results/2022-1201/work_PASA_preprocessed-rcor-only_gene-overlap.sh b/results/2022-1201/work_PASA_preprocessed-rcor-only_gene-overlap.sh deleted file mode 100644 index 3039b88..0000000 --- a/results/2022-1201/work_PASA_preprocessed-rcor-only_gene-overlap.sh +++ /dev/null @@ -1,434 +0,0 @@ -#!/bin/bash - -# work_PASA_preprocessed-rcor-only_gene-overlap.sh -# KA -# 2022-1229 - - -mamba activate Trinity_env -ml Singularity - - -# Create an array of files of interest, including relative paths ------------- -# "rcor-only processed" genome-guided .fastas ------------ -# EndToEnd -unset GG_rcor_EndToEnd -typeset -a GG_rcor_EndToEnd -while IFS=" " read -r -d $'\0'; do - GG_rcor_EndToEnd+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-rcor-only" \ - -type f \ - -name "*EndToEnd.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_rcor_EndToEnd[@]}" - -# Local -unset GG_rcor_Local -typeset -a GG_rcor_Local -while IFS=" " read -r -d $'\0'; do - GG_rcor_Local+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-rcor-only" \ - -type f \ - -name "*Local.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_rcor_Local[@]}" - -unset T_rcor -typeset -A T_rcor - -# EndToEnd -GF_rcor_EndToEnd="files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta" -for i in "${GG_rcor_EndToEnd[@]}"; do - # echo "Working with ${i}..." - T_rcor["${i}"]+="${GF_rcor_EndToEnd}" - echo "" -done - -# Local -GF_rcor_Local="files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Trinity.fasta" -for i in "${GG_rcor_Local[@]}"; do - # echo "Working with ${i}..." - T_rcor["${i}"]+="${GF_rcor_Local}" - echo "" -done - - -# How do the assignments look? ----------------------------------------------- -message=""" -# 'rcor-only processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_rcor[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_rcor[@]}") -""" -echo "${message}" - - -# Establish functions for setting up names of directories, files, etc. ------- -name_tx_db() { - # This function parses pertinent path and filename info to determine the - # name of a transcriptome database; it's highly dependent on the context of - # these particular sets of experiments - # - # :param 1: associate array "keys" - # :param 2: number of key to work with - echo "${1}" \ - | cut -d ' ' -f "${2}" \ - | cut -d '/' -f 3- \ - | rev \ - | cut -b 18- \ - | rev -} - - -get_key_or_value() { - #TODO Documentation - echo "${1}" | cut -d ' ' -f "${2}" -} - - -get_GG_or_GF() { - #TODO Documentation - echo "${1}" | cut -d ',' -f "${2}" -} - - -# Make an associative array that connects the information for... ------------- -#+ Trinity-GF .fastas, Trinity-GG .fastas, and PASA databases -unset info_tx_db -typeset -A info_tx_db -for i in "T_rcor"; do - for j in $(seq 1 12); do - # i="T_rcor" - # j=1 - echo "# -------------------------------------" - old_key="get_key_or_value \"\${!${i}[*]}\" ${j}" - echo "${old_key}" - eval "${old_key}" - echo "" - - old_value="get_key_or_value \"\${${i}[*]}\" ${j}" - echo "${old_value}" - eval "${old_value}" - echo "" - - name_of_db="name_tx_db \"\${!${i}[*]}\" ${j}" - echo "${name_of_db}" - eval "${name_of_db}" - echo "" - - new_key="$(echo "$(eval "${name_of_db}")")" - new_val="$(echo "$(eval "${old_key}"),$(eval "${old_value}")")" - info_tx_db["${new_key}"]="${new_val}" - echo "" - done -done - -# Make sure everything is correctly associated -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" -done - - -# Get a .gff3 ready for precursor and main commands -------------------------- -#TODO Test that *.gff3.gz is present as well -if [[ ! -f "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" ]]; then - zcat "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz" \ - > "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" -fi - - -# Set up and run loop for precursor commands --------------------------------- -# values=(10.0 20.0 30.0 40.0 50.0 60.0 70.0 80.0 90.0) -# values=(30.0 40.0 50.0 60.0 70.0) -# values=(20.0 80.0) -values=(10.0 90.0) -for h in "${values[@]}"; do - # Define important variables -------------------------------------------------- - value="${h}" - d_exp="files_PASA_rcor-only_gene-overlap-${value}" - s_name="submit_PASA_rcor-only_gene-overlap-${value}.sh" - export PASAHOME="/usr/local/src/PASApipeline" - - echo " \${value}: ${value}" - echo " \${d_exp}: ${d_exp}" - echo " \${s_name}: ${s_name}" - echo "\${PASAHOME}: ${PASAHOME}" - echo "" - - - # Set up and run loop for PASA precursor commands ----------------------------- - count=1 - for i in "${!info_tx_db[@]}"; do - echo "# ========================================================================" - echo "# Working with iteration ### ${count} ### =======================================" - echo "# ========================================================================" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# mkdir the experiment directory -----------------------------------------" - echo "# ------------------------------------------------------------------------" - [[ -d "${d_exp}/${i}" ]] \ - || mkdir -p "${d_exp}/${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# cat the .fastas from Trinity genome-free and genome-guided approaches --" - echo "# ------------------------------------------------------------------------" - cmd="cat \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 1) \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 2) \ - > ${d_exp}/${i}/${i}.transcripts.fasta" - echo "${cmd}" - eval "${cmd}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Create .txts for Trinity genome-free transcript accessions -------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - \< {genome_free_fasta} \ - \> {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - < {genome_free_fasta} \ - > {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Clean the transcript sequences -----------------------------------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${d_exp}/${i}/${i}.transcripts.fasta" - - cd "${d_exp}/${i}" - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${i}.transcripts.fasta" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Write .config files for the calls to PASA ------------------------------" - echo "# ------------------------------------------------------------------------" -cat << align_assembly > "./${d_exp}/${i}/${i}.align_assembly.config" -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/${d_exp}/${i}/${i}.pasa.sqlite - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 -align_assembly - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .fasta in each PASA experiment directory --" - echo "# ------------------------------------------------------------------------" - fasta_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" - fasta_SC_sym="$(basename ${fasta_SC_orig})" - cmd="ln -s ${fasta_SC_orig} ${fasta_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${fasta_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory ---" - echo "# ------------------------------------------------------------------------" - gff3_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" - gff3_SC_sym="$(basename ${gff3_SC_orig})" - cmd="ln -s ${gff3_SC_orig} ${gff3_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${gff3_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Print the contents of the given PASA experiment directory --------------" - echo "# ------------------------------------------------------------------------" - ., "./${d_exp}/${i}" - echo "" && echo "" - echo "" && echo "" - - (( count++ )) - done - - - # Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl` --------- - threads=8 - if [[ -f "./sh_err_out/${s_name}" ]]; then - rm "./sh_err_out/${s_name}" - fi -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_directory="\${1}" -str_experiment="\${2}" -str_accessions="\${3}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "\${str_directory}/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - "\${PASAHOME}/Launch_PASA_pipeline.pl" \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - -L \\ - --annots "Saccharomyces_cerevisiae.R64-1-1.108.gff3" \\ - --gene_overlap ${value} \\ - --ALIGNERS "blat,gmap,minimap2" \\ - 1> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stderr.log" >&2) - -if [[ -f "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - # cyberciti.biz/faq/linux-unix-script-check-if-file-empty-or-not/ - if [[ -s "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stderr.log" >&2) - else - echo "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf is empty" - echo "Check on things..." - fi -fi - -script - # vi "sh_err_out/${s_name}" # :q - - - # Run the job submission script for `PASA` `Launch_PASA_pipeline.pl` ---------- - for i in "${!info_tx_db[@]}"; do - echo "" - str_directory="${d_exp}" - str_experiment="${i}" - str_accessions="$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" - - echo "# =========================================================" - echo "- \${str_directory} is ${str_directory}" - echo "- \${str_experiment} is ${str_experiment}" - echo "- \${str_accessions} is ${str_accessions}" - echo "" - - sbatch "sh_err_out/${s_name}" "${str_directory}" "${str_experiment}" "${str_accessions}" - sleep 0.25 - echo "" - echo "" - done -done diff --git a/results/2022-1201/work_PASA_preprocessed-rcor-only_minimal-overlap.sh b/results/2022-1201/work_PASA_preprocessed-rcor-only_minimal-overlap.sh deleted file mode 100644 index 42a4703..0000000 --- a/results/2022-1201/work_PASA_preprocessed-rcor-only_minimal-overlap.sh +++ /dev/null @@ -1,424 +0,0 @@ -#!/bin/bash - -# work_PASA_preprocessed-rcor-only_minimal-overlap.sh -# KA -# 2022-1229 - - -mamba activate Trinity_env -ml Singularity - - -# Create an array of files of interest, including relative paths ------------- -# "rcor-only processed" genome-guided .fastas ------------ -# EndToEnd -unset GG_rcor_EndToEnd -typeset -a GG_rcor_EndToEnd -while IFS=" " read -r -d $'\0'; do - GG_rcor_EndToEnd+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-rcor-only" \ - -type f \ - -name "*EndToEnd.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_rcor_EndToEnd[@]}" - -# Local -unset GG_rcor_Local -typeset -a GG_rcor_Local -while IFS=" " read -r -d $'\0'; do - GG_rcor_Local+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-rcor-only" \ - -type f \ - -name "*Local.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_rcor_Local[@]}" - -unset T_rcor -typeset -A T_rcor - -# EndToEnd -GF_rcor_EndToEnd="files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta" -for i in "${GG_rcor_EndToEnd[@]}"; do - # echo "Working with ${i}..." - T_rcor["${i}"]+="${GF_rcor_EndToEnd}" - echo "" -done - -# Local -GF_rcor_Local="files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Trinity.fasta" -for i in "${GG_rcor_Local[@]}"; do - # echo "Working with ${i}..." - T_rcor["${i}"]+="${GF_rcor_Local}" - echo "" -done - - -# How do the assignments look? ----------------------------------------------- -message=""" -# 'rcor-only processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_rcor[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_rcor[@]}") -""" -echo "${message}" - - -# Establish functions for setting up names of directories, files, etc. ------- -name_tx_db() { - # This function parses pertinent path and filename info to determine the - # name of a transcriptome database; it's highly dependent on the context of - # these particular sets of experiments - # - # :param 1: associate array "keys" - # :param 2: number of key to work with - echo "${1}" \ - | cut -d ' ' -f "${2}" \ - | cut -d '/' -f 3- \ - | rev \ - | cut -b 18- \ - | rev -} - - -get_key_or_value() { - #TODO Documentation - echo "${1}" | cut -d ' ' -f "${2}" -} - - -get_GG_or_GF() { - #TODO Documentation - echo "${1}" | cut -d ',' -f "${2}" -} - - -# Make an associative array that connects the information for... ------------- -#+ Trinity-GF .fastas, Trinity-GG .fastas, and PASA databases -unset info_tx_db -typeset -A info_tx_db -for i in "T_rcor"; do - for j in $(seq 1 12); do - # i="T_rcor" - # j=1 - echo "# -------------------------------------" - old_key="get_key_or_value \"\${!${i}[*]}\" ${j}" - echo "${old_key}" - eval "${old_key}" - echo "" - - old_value="get_key_or_value \"\${${i}[*]}\" ${j}" - echo "${old_value}" - eval "${old_value}" - echo "" - - name_of_db="name_tx_db \"\${!${i}[*]}\" ${j}" - echo "${name_of_db}" - eval "${name_of_db}" - echo "" - - new_key="$(echo "$(eval "${name_of_db}")")" - new_val="$(echo "$(eval "${old_key}"),$(eval "${old_value}")")" - info_tx_db["${new_key}"]="${new_val}" - echo "" - done -done - -# Make sure everything is correctly associated -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" -done - - -# Get a .gff3 ready for precursor and main commands -------------------------- -#TODO Test that *.gff3.gz is present as well -if [[ ! -f "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" ]]; then - zcat "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz" \ - > "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" -fi - - -# Set up and run precursor commands ----------------------------------------------- -# Define important variables -------------------------------------------------- -d_exp="files_PASA_rcor-only_minimal-overlap" -s_name="submit_PASA_rcor-only_minimal-overlap.sh" -export PASAHOME="/usr/local/src/PASApipeline" - -echo " \${d_exp}: ${d_exp}" -echo " \${s_name}: ${s_name}" -echo "\${PASAHOME}: ${PASAHOME}" -echo "" - - -# Set up and run loop for PASA precursor commands ----------------------------- -count=1 -for i in "${!info_tx_db[@]}"; do - echo "# ========================================================================" - echo "# Working with iteration ### ${count} ### =======================================" - echo "# ========================================================================" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# mkdir the experiment directory -----------------------------------------" - echo "# ------------------------------------------------------------------------" - [[ -d "${d_exp}/${i}" ]] \ - || mkdir -p "${d_exp}/${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# cat the .fastas from Trinity genome-free and genome-guided approaches --" - echo "# ------------------------------------------------------------------------" - cmd="cat \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 1) \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 2) \ - > ${d_exp}/${i}/${i}.transcripts.fasta" - echo "${cmd}" - eval "${cmd}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Create .txts for Trinity genome-free transcript accessions -------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - \< {genome_free_fasta} \ - \> {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - < {genome_free_fasta} \ - > {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Clean the transcript sequences -----------------------------------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${d_exp}/${i}/${i}.transcripts.fasta" - - cd "${d_exp}/${i}" - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${i}.transcripts.fasta" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Write .config files for the calls to PASA ------------------------------" - echo "# ------------------------------------------------------------------------" -cat << align_assembly > "./${d_exp}/${i}/${i}.align_assembly.config" -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/${d_exp}/${i}/${i}.pasa.sqlite - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 -align_assembly - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .fasta in each PASA experiment directory --" - echo "# ------------------------------------------------------------------------" - fasta_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" - fasta_SC_sym="$(basename ${fasta_SC_orig})" - cmd="ln -s ${fasta_SC_orig} ${fasta_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${fasta_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory ---" - echo "# ------------------------------------------------------------------------" - gff3_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" - gff3_SC_sym="$(basename ${gff3_SC_orig})" - cmd="ln -s ${gff3_SC_orig} ${gff3_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${gff3_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Print the contents of the given PASA experiment directory --------------" - echo "# ------------------------------------------------------------------------" - ., "./${d_exp}/${i}" - echo "" && echo "" - echo "" && echo "" - - (( count++ )) -done - - -# Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl` --------- -threads=8 -if [[ -f "./sh_err_out/${s_name}" ]]; then - rm "./sh_err_out/${s_name}" -fi -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_directory="\${1}" -str_experiment="\${2}" -str_accessions="\${3}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "\${str_directory}/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - "\${PASAHOME}/Launch_PASA_pipeline.pl" \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - --ALIGNERS "blat,gmap,minimap2" \\ - 1> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stderr.log" >&2) - -if [[ -f "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - # cyberciti.biz/faq/linux-unix-script-check-if-file-empty-or-not/ - if [[ -s "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stderr.log" >&2) - else - echo "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf is empty" - echo "Check on things..." - fi -fi - -script -# vi "sh_err_out/${s_name}" # :q - - -# Run the job submission script for `PASA` `Launch_PASA_pipeline.pl` ---------- -for i in "${!info_tx_db[@]}"; do - echo "" - str_directory="${d_exp}" - str_experiment="${i}" - str_accessions="$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" - - echo "# =========================================================" - echo "- \${str_directory} is ${str_directory}" - echo "- \${str_experiment} is ${str_experiment}" - echo "- \${str_accessions} is ${str_accessions}" - echo "" - - echo "sbatch \"sh_err_out/${s_name}\" \"${str_directory}\" \"${str_experiment}\" \"${str_accessions}\"" - sbatch "sh_err_out/${s_name}" "${str_directory}" "${str_experiment}" "${str_accessions}" - sleep 0.25 - echo "" - echo "" -done diff --git a/results/2022-1201/work_PASA_preprocessed-rcor-only_stringent-alignment-overlap.sh b/results/2022-1201/work_PASA_preprocessed-rcor-only_stringent-alignment-overlap.sh deleted file mode 100644 index ed8e620..0000000 --- a/results/2022-1201/work_PASA_preprocessed-rcor-only_stringent-alignment-overlap.sh +++ /dev/null @@ -1,432 +0,0 @@ -#!/bin/bash - -# work_PASA_preprocessed-rcor-only_stringent-alignment-overlap.sh -# KA -# 2022-1229 - - -mamba activate Trinity_env -ml Singularity - - -# Create an array of files of interest, including relative paths ------------- -# "rcor-only processed" genome-guided .fastas ------------ -# EndToEnd -unset GG_rcor_EndToEnd -typeset -a GG_rcor_EndToEnd -while IFS=" " read -r -d $'\0'; do - GG_rcor_EndToEnd+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-rcor-only" \ - -type f \ - -name "*EndToEnd.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_rcor_EndToEnd[@]}" - -# Local -unset GG_rcor_Local -typeset -a GG_rcor_Local -while IFS=" " read -r -d $'\0'; do - GG_rcor_Local+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-rcor-only" \ - -type f \ - -name "*Local.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_rcor_Local[@]}" - -unset T_rcor -typeset -A T_rcor - -# EndToEnd -GF_rcor_EndToEnd="files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta" -for i in "${GG_rcor_EndToEnd[@]}"; do - # echo "Working with ${i}..." - T_rcor["${i}"]+="${GF_rcor_EndToEnd}" - echo "" -done - -# Local -GF_rcor_Local="files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Trinity.fasta" -for i in "${GG_rcor_Local[@]}"; do - # echo "Working with ${i}..." - T_rcor["${i}"]+="${GF_rcor_Local}" - echo "" -done - - -# How do the assignments look? ----------------------------------------------- -message=""" -# 'rcor-only processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_rcor[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_rcor[@]}") -""" -echo "${message}" - - -# Establish functions for setting up names of directories, files, etc. ------- -name_tx_db() { - # This function parses pertinent path and filename info to determine the - # name of a transcriptome database; it's highly dependent on the context of - # these particular sets of experiments - # - # :param 1: associate array "keys" - # :param 2: number of key to work with - echo "${1}" \ - | cut -d ' ' -f "${2}" \ - | cut -d '/' -f 3- \ - | rev \ - | cut -b 18- \ - | rev -} - - -get_key_or_value() { - #TODO Documentation - echo "${1}" | cut -d ' ' -f "${2}" -} - - -get_GG_or_GF() { - #TODO Documentation - echo "${1}" | cut -d ',' -f "${2}" -} - - -# Make an associative array that connects the information for... ------------- -#+ Trinity-GF .fastas, Trinity-GG .fastas, and PASA databases -unset info_tx_db -typeset -A info_tx_db -for i in "T_rcor"; do - for j in $(seq 1 12); do - # i="T_rcor" - # j=1 - echo "# -------------------------------------" - old_key="get_key_or_value \"\${!${i}[*]}\" ${j}" - echo "${old_key}" - eval "${old_key}" - echo "" - - old_value="get_key_or_value \"\${${i}[*]}\" ${j}" - echo "${old_value}" - eval "${old_value}" - echo "" - - name_of_db="name_tx_db \"\${!${i}[*]}\" ${j}" - echo "${name_of_db}" - eval "${name_of_db}" - echo "" - - new_key="$(echo "$(eval "${name_of_db}")")" - new_val="$(echo "$(eval "${old_key}"),$(eval "${old_value}")")" - info_tx_db["${new_key}"]="${new_val}" - echo "" - done -done - -# Make sure everything is correctly associated -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" -done - - -# Get a .gff3 ready for precursor and main commands -------------------------- -#TODO Test that *.gff3.gz is present as well -if [[ ! -f "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" ]]; then - zcat "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz" \ - > "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" -fi - - -# Set up and run loop for precursor commands --------------------------------- -# values=(10.0 20.0 30.0 40.0 50.0 60.0 70.0 80.0 90.0) -# values=(10.0 20.0 30.0 40.0 50.0) -# values=(60.0 70.0) -values=(80.0 90.0) -for h in "${values[@]}"; do - # Define important variables -------------------------------------------------- - value="${h}" - d_exp="files_PASA_rcor-only_stringent-alignment-overlap-${value}" - s_name="submit_PASA_rcor-only_stringent-alignment-overlap-${value}.sh" - export PASAHOME="/usr/local/src/PASApipeline" - - echo " \${value}: ${value}" - echo " \${d_exp}: ${d_exp}" - echo " \${s_name}: ${s_name}" - echo "\${PASAHOME}: ${PASAHOME}" - echo "" - - - # Set up and run loop for PASA precursor commands ----------------------------- - count=1 - for i in "${!info_tx_db[@]}"; do - echo "# ========================================================================" - echo "# Working with iteration ### ${count} ### =======================================" - echo "# ========================================================================" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# mkdir the experiment directory -----------------------------------------" - echo "# ------------------------------------------------------------------------" - [[ -d "${d_exp}/${i}" ]] \ - || mkdir -p "${d_exp}/${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# cat the .fastas from Trinity genome-free and genome-guided approaches --" - echo "# ------------------------------------------------------------------------" - cmd="cat \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 1) \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 2) \ - > ${d_exp}/${i}/${i}.transcripts.fasta" - echo "${cmd}" - eval "${cmd}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Create .txts for Trinity genome-free transcript accessions -------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - \< {genome_free_fasta} \ - \> {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - < {genome_free_fasta} \ - > {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Clean the transcript sequences -----------------------------------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${d_exp}/${i}/${i}.transcripts.fasta" - - cd "${d_exp}/${i}" - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${i}.transcripts.fasta" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Write .config files for the calls to PASA ------------------------------" - echo "# ------------------------------------------------------------------------" -cat << align_assembly > "./${d_exp}/${i}/${i}.align_assembly.config" -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/${d_exp}/${i}/${i}.pasa.sqlite - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 -align_assembly - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .fasta in each PASA experiment directory --" - echo "# ------------------------------------------------------------------------" - fasta_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" - fasta_SC_sym="$(basename ${fasta_SC_orig})" - cmd="ln -s ${fasta_SC_orig} ${fasta_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${fasta_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory ---" - echo "# ------------------------------------------------------------------------" - gff3_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" - gff3_SC_sym="$(basename ${gff3_SC_orig})" - cmd="ln -s ${gff3_SC_orig} ${gff3_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${gff3_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Print the contents of the given PASA experiment directory --------------" - echo "# ------------------------------------------------------------------------" - ., "./${d_exp}/${i}" - echo "" && echo "" - echo "" && echo "" - - (( count++ )) - done - - - # Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl` --------- - threads=8 - if [[ -f "./sh_err_out/${s_name}" ]]; then - rm "./sh_err_out/${s_name}" - fi -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_directory="\${1}" -str_experiment="\${2}" -str_accessions="\${3}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "\${str_directory}/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - "\${PASAHOME}/Launch_PASA_pipeline.pl" \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - --stringent_alignment_overlap ${value} \\ - --ALIGNERS "blat,gmap,minimap2" \\ - 1> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stderr.log" >&2) - -if [[ -f "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - # cyberciti.biz/faq/linux-unix-script-check-if-file-empty-or-not/ - if [[ -s "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stderr.log" >&2) - else - echo "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf is empty" - echo "Check on things..." - fi -fi - -script - # vi "sh_err_out/${s_name}" # :q - - - # Run the job submission script for `PASA` `Launch_PASA_pipeline.pl` ---------- - for i in "${!info_tx_db[@]}"; do - echo "" - str_directory="${d_exp}" - str_experiment="${i}" - str_accessions="$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" - - echo "# =========================================================" - echo "- \${str_directory} is ${str_directory}" - echo "- \${str_experiment} is ${str_experiment}" - echo "- \${str_accessions} is ${str_accessions}" - echo "" - - sbatch "sh_err_out/${s_name}" "${str_directory}" "${str_experiment}" "${str_accessions}" - sleep 0.25 - echo "" - echo "" - done -done diff --git a/results/2022-1201/work_PASA_restart-failed-jobs.md b/results/2022-1201/work_PASA_restart-failed-jobs.md deleted file mode 100644 index ac62511..0000000 --- a/results/2022-1201/work_PASA_restart-failed-jobs.md +++ /dev/null @@ -1,304 +0,0 @@ - -`#work_PASA_restart-failed-jobs.md` - -
-Table of contents - - -1. [Restarting jobs](#restarting-jobs) - 1. [Messages with BH](#messages-with-bh) - 1. [Me → BH, `2022-1227, 1206`](#me-%E2%86%92-bh-2022-1227-1206) - 1. [BH → me, `2022-1227, 1221`](#bh-%E2%86%92-me-2022-1227-1221) - 1. [`files_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local`](#files_pasa_un_trim_trim-rcor_stringent-alignment-overlap-500trinity_5781-5782_q_ip_mergedun_multi-hit-mode_10_local) - 1. [`files_PASA_un_trim_trim-rcor_gene-overlap-70.0/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd`](#files_pasa_un_trim_trim-rcor_gene-overlap-700trinity_5781-5782_q_ip_mergedtrim-rcormulti-hit-mode_100_endtoend) - 1. [`files_PASA_un_trim_trim-rcor_gene-overlap-20.0/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd`](#files_pasa_un_trim_trim-rcor_gene-overlap-200trinity_5781-5782_q_ip_mergedtrim-rcormulti-hit-mode_10_endtoend) - - -
-
- - -## Restarting jobs - -### Messages with BH - -#### Me → BH, `2022-1227, 1206` -Hi Brian, - -I'm encountering an error after trying to relaunch PASA: scripts/assembly_db_loader.dbi will not connect to the SQLite database. However, the database exists at the path listed below and is not an empty file. Do you have any advice on this? - -Thanks, -Kris - -Final portion of STDERR: -```txt -* [Tue Dec 27 08:54:15 2022] Running CMD: /usr/local/src/PASApipeline/scripts/assembly_db_loader.dbi -M '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.pasa.sqlite' > pasa_run.log.dir/alignment_assembly_loading.out -DBI connect('database=/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.pasa.sqlite;host=localhost','root',...) failed: unable to open database file at /usr/local/src/PASApipeline/PerlLib/DB_connect.pm line 72. -Cannot connect to /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.pasa.sqlite: unable to open database file at /usr/local/src/PASApipeline/scripts/assembly_db_loader.dbi line 51. -Error, cmd: /usr/local/src/PASApipeline/scripts/assembly_db_loader.dbi -M '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.pasa.sqlite' > pasa_run.log.dir/alignment_assembly_loading.out died with ret 65280 No such file or directory at /usr/local/src/PASApipeline/PerlLib/Pipeliner.pm line 187. - Pipeliner::run(Pipeliner=HASH(0x55d8719355c0)) called at /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl line 1047 -``` - - -#### BH → me, `2022-1227, 1221` -Hi Kris, - -so if you run: - - ls /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.pasa.sqlite - -does it show the file? - -If yes, then maybe the path is too long for it. Try copying the file to /tmp and see if it'll find it there. - -best, - -~b - - -### `files_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local` -Setting things up (`tmp/`) for `files_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local` -```bash -#!/bin/bash -#DONTRUN - - -# Get things set up ---------------------------------------------------------- -grabnode # 1 core, corresponding defaults - -cd "${HOME}/2022_transcriptome-construction_2022-1201" \ - || echo "cd'ing failed; check on this" - -cd \ - "files_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local" \ - || echo "cd'ing failed; check on this" - - -# Clean out the Tsukiyama Lab scratch directory ------------------------------ -cd "/fh/scratch/delete30/tsukiyama_t" \ - || echo "cd'ing failed; check on this" - -rm -- pasa.16717* - -mkdir -p a/ - - -# Copy the SQLite database, etc. to the Tsukiyama Lab scratch directory ------ -cd -- - -# /home/kalavatt/2022_transcriptome-construction_2022-1201/files_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local - -# cp -- *.sqlite "/fh/scratch/delete30/tsukiyama_t/a" -cp -- *.accessions "/fh/scratch/delete30/tsukiyama_t/a" -cp -- *.align_assembly.config "/fh/scratch/delete30/tsukiyama_t/a" -cp -- *.fasta "/fh/scratch/delete30/tsukiyama_t/a" -cp -- *.clean "/fh/scratch/delete30/tsukiyama_t/a" -cp -- *.cln "/fh/scratch/delete30/tsukiyama_t/a" - -cd "/fh/scratch/delete30/tsukiyama_t/a" \ - || echo "cd'ing failed; check on this" -., -#NOTE 1/2 Adjust the *.align_assembly.config to point to the SQLite in the -#NOTE 2/2 current temporary directory - - -# Get ready to run the script of interest ------------------------------------ -str_directory="/fh/scratch/delete30/tsukiyama_t/b" -str_experiment="trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local" -str_accessions="trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions" - - -# Call the script of interest ------------------------------------------------ -cd "${HOME}/2022_transcriptome-construction_2022-1201" \ - || echo "cd'ing failed; check on this" -# /home/kalavatt/2022_transcriptome-construction_2022-1201 - -# sbatch \ -# "sh_err_out/submit_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0.sh" \ -# "${str_directory}" \ -# "${str_experiment}" \ -# "${str_accessions}" - -#NOTE 1/N Made a local version of -#NOTE 2/N submit_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0.sh to -#NOTE 3/N be called from /fh/scratch/delete30/tsukiyama_t -cd "/fh/scratch/delete30/tsukiyama_t/a" \ - || echo "cd'ing failed; check on this" - -sbatch submit_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0.sh -# It seems to be running now; also, #NOTE that you should not quote the path -#+ to the SQLite database in the *.config file -``` - -*Reference: The previous way you called the script...* -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -sbatch \ - sh_err_out/submit_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0.sh \ - files_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0 \ - trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local \ - trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions -``` - - -### `files_PASA_un_trim_trim-rcor_gene-overlap-70.0/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd` -Setting things up (`tmp/`) for `files_PASA_un_trim_trim-rcor_gene-overlap-70.0/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd` -```bash -#!/bin/bash -#DONTRUN - - -# Get things set up ---------------------------------------------------------- -grabnode # 1 core, corresponding defaults - -cd "${HOME}/2022_transcriptome-construction_2022-1201" \ - || echo "cd'ing failed; check on this" - -cd \ - "files_PASA_un_trim_trim-rcor_gene-overlap-70.0/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd" \ - || echo "cd'ing failed; check on this" - - -# Clean out the Tsukiyama Lab scratch directory ------------------------------ -cd "/fh/scratch/delete30/tsukiyama_t" \ - || echo "cd'ing failed; check on this" - -mkdir -p b/ -# ., - - -# Copy the SQLite database, etc. to the Tsukiyama Lab scratch directory ------ -cd -- - - -# cp -- *.sqlite "/fh/scratch/delete30/tsukiyama_t/b" -cp -- *.accessions "/fh/scratch/delete30/tsukiyama_t/b" -cp -- *.align_assembly.config "/fh/scratch/delete30/tsukiyama_t/b" -cp -- *.fasta "/fh/scratch/delete30/tsukiyama_t/b" -cp -- *.clean "/fh/scratch/delete30/tsukiyama_t/b" -cp -- *.cln "/fh/scratch/delete30/tsukiyama_t/b" - -cd "/fh/scratch/delete30/tsukiyama_t/b" \ - || echo "cd'ing failed; check on this" -., - -cd "${HOME}/2022_transcriptome-construction_2022-1201" \ - || echo "cd'ing failed; check on this" -cp sh_err_out/submit_PASA_un_trim_trim-rcor_gene-overlap-70.0.sh "/fh/scratch/delete30/tsukiyama_t/b" - -cd "/fh/scratch/delete30/tsukiyama_t/b" \ - || echo "cd'ing failed; check on this" -., - -#NOTE 1/2 Adjust the *.align_assembly.config to point to the SQLite in the -#NOTE 2/2 current temporary directory - - -# Get ready to run the script of interest ------------------------------------ -str_directory="/fh/scratch/delete30/tsukiyama_t/b" -str_experiment="trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local" -str_accessions="trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.accessions" - - -# Call the script of interest ------------------------------------------------ -cd "${HOME}/2022_transcriptome-construction_2022-1201" \ - || echo "cd'ing failed; check on this" -# /home/kalavatt/2022_transcriptome-construction_2022-1201 - -# sbatch \ -# "sh_err_out/submit_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0.sh" \ -# "${str_directory}" \ -# "${str_experiment}" \ -# "${str_accessions}" - -#NOTE 1/N Made a local version of -#NOTE 2/N submit_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0.sh to -#NOTE 3/N be called from /fh/scratch/delete30/tsukiyama_t -cd "/fh/scratch/delete30/tsukiyama_t/b" \ - || echo "cd'ing failed; check on this" - -sbatch submit_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0.sh -# It seems to be running now; also, #NOTE that you should not quote the path -#+ to the SQLite database in the *.config file -``` - - -### `files_PASA_un_trim_trim-rcor_gene-overlap-20.0/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd` -Setting things up (`tmp/`) for `files_PASA_un_trim_trim-rcor_gene-overlap-20.0/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd` -```bash -#!/bin/bash -#DONTRUN - - -# Get things set up ---------------------------------------------------------- -grabnode # 1 core, corresponding defaults - -cd "${HOME}/2022_transcriptome-construction_2022-1201" \ - || echo "cd'ing failed; check on this" - -cd \ - "files_PASA_un_trim_trim-rcor_gene-overlap-20.0/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd" \ - || echo "cd'ing failed; check on this" - - -# Clean out the Tsukiyama Lab scratch directory ------------------------------ -cd "/fh/scratch/delete30/tsukiyama_t" \ - || echo "cd'ing failed; check on this" - -mkdir -p c/ -# ., - - -# Copy the SQLite database, etc. to the Tsukiyama Lab scratch directory ------ -cd -- - - -# cp -- *.sqlite "/fh/scratch/delete30/tsukiyama_t/b" -cp -- *.accessions "/fh/scratch/delete30/tsukiyama_t/c" -cp -- *.align_assembly.config "/fh/scratch/delete30/tsukiyama_t/c" -cp -- *.fasta "/fh/scratch/delete30/tsukiyama_t/c" -cp -- *.clean "/fh/scratch/delete30/tsukiyama_t/c" -cp -- *.cln "/fh/scratch/delete30/tsukiyama_t/c" - -cd "/fh/scratch/delete30/tsukiyama_t/c" \ - || echo "cd'ing failed; check on this" -., - -cd "${HOME}/2022_transcriptome-construction_2022-1201" \ - || echo "cd'ing failed; check on this" -cp sh_err_out/submit_PASA_un_trim_trim-rcor_gene-overlap-20.0.sh "/fh/scratch/delete30/tsukiyama_t/c" - -cd "/fh/scratch/delete30/tsukiyama_t/c" \ - || echo "cd'ing failed; check on this" -., - -#NOTE 1/2 Adjust the *.align_assembly.config to point to the SQLite in the -#NOTE 2/2 current temporary directory - - -# Get ready to run the script of interest ------------------------------------ -str_directory="/fh/scratch/delete30/tsukiyama_t/c" -str_experiment="trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd" -str_accessions="trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.accessions" - - -# Call the script of interest ------------------------------------------------ -cd "${HOME}/2022_transcriptome-construction_2022-1201" \ - || echo "cd'ing failed; check on this" -# /home/kalavatt/2022_transcriptome-construction_2022-1201 - -# sbatch \ -# "sh_err_out/submit_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0.sh" \ -# "${str_directory}" \ -# "${str_experiment}" \ -# "${str_accessions}" - -#NOTE 1/N Made a local version of -#NOTE 2/N submit_PASA_un_trim_trim-rcor_stringent-alignment-overlap-50.0.sh to -#NOTE 3/N be called from /fh/scratch/delete30/tsukiyama_t -cd "/fh/scratch/delete30/tsukiyama_t/c" \ - || echo "cd'ing failed; check on this" - -sbatch submit_PASA_un_trim_trim-rcor_gene-overlap-20.0.sh -# It seems to be running now; also, #NOTE that you should not quote the path -#+ to the SQLite database in the *.config file -``` diff --git a/results/2022-1201/work_PASA_run-PASAweb-with-Docker.md b/results/2022-1201/work_PASA_run-PASAweb-with-Docker.md deleted file mode 100644 index 4d06a06..0000000 --- a/results/2022-1201/work_PASA_run-PASAweb-with-Docker.md +++ /dev/null @@ -1,453 +0,0 @@ - -`#work_PASA_run-PasaWeb-with-Docker.md` -
-
- -
-Table of contents - - -1. [On calling `PASA` with `Docker`](#on-calling-pasa-with-docker) - 1. [Follow on and build on examples](#follow-on-and-build-on-examples) - 1. [To address the warning messages...](#to-address-the-warning-messages) -1. [On running `PasaWeb` via `Docker`](#on-running-pasaweb-via-docker) - 1. [To resolve the error try installing `lighttpd` into `Trinity_env`](#to-resolve-the-error-try-installing-lighttpd-into-trinity_env) - 1. [Try things again after having installed `lighttpd`](#try-things-again-after-having-installed-lighttpd) - 1. [Perform troubleshooting](#perform-troubleshooting) - 1. [Using a web browser such as `Chrome`, go to `http://localhost:9000/`](#using-a-web-browser-such-as-chrome-go-to-httplocalhost9000) - 1. [Unable to connect it to the `sqlite` database, so try changing the mounting](#unable-to-connect-it-to-the-sqlite-database-so-try-changing-the-mounting) - 1. [Change directories to check another `sqlite` database](#change-directories-to-check-another-sqlite-database) - - -
-
- - -## On calling `PASA` with `Docker` - -### Follow on and build on examples -e.g., the examples included in the [`PASApipeline` `GitHub` repo documentation](https://github.com/PASApipeline/PASApipeline/wiki/PASA_Docker) - -```bash -#!/bin/bash -#DONTRUN - -transcriptome && \ - cd "results/2022-1201/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd" - -docker run \ - --rm -it \ - -v "/tmp":"/tmp" \ - -v "$(pwd)":"/$(basename "$(pwd)")" \ - pasapipeline/pasapipeline:latest \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl -h -``` - -
-Click to view: Warning and help messages printed to terminal - -```txt -❯ docker run \ -> --rm -it \ -> -v "/tmp":"/tmp" \ -> -v "$(pwd)":"/$(basename "$(pwd)")" \ -> pasapipeline/pasapipeline:latest \ -> /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl -h -WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested - -############################# Options ############################### -# -# * indicates required -# -# -# --config|-c * alignment assembly configuration file -# -# // spliced alignment settings -# --ALIGNERS aligners (available options include: gmap, blat, minimap2... can run using several, ie. 'gmap,blat,minimap2') -# -N max number of top scoring alignments (default: 1) -# --MAX_INTRON_LENGTH|-I (max intron length parameter passed to GMAP or BLAT) (default: 100000) -# --IMPORT_CUSTOM_ALIGNMENTS_GFF3 :only using the alignments supplied in the corresponding GFF3 file. -# --trans_gtf :incorporate cufflinks or stringtie--generated transcripts -# -# -# // actions -# --create|-C flag, create database -# --replace|-r flag, drop database if -C is also given. This will DELETE all your data and it is irreversible. -# --run|-R flag, run alignment/assembly pipeline. -# --annot_compare|-A (see section below; can use with opts -L and --annots) compare to annotated genes. -# --ALT_SPLICE flag, run alternative splicing analysis - -# // input files -# --genome|-g * genome sequence FASTA file (should contain annot db asmbl_id as header accession.) -# --transcripts|-t * transcript db -# -f file containing a list of fl-cdna accessions. -# --TDN file containing a list of accessions corresponding to Trinity (full) de novo assemblies (not genome-guided) -# -# // polyAdenylation site identification ** highly recommended ** -# -T flag,transcript db were trimmed using the TGI seqclean tool. -# -u value, transcript db containing untrimmed sequences (input to seqclean) -# -# -# -# -# Misc: -# --TRANSDECODER flag, run transdecoder to identify candidate full-length coding transcripts -# --CPU multithreading (default: 2) -# --PASACONF path to a user-defined pasa.conf file containing mysql connection info -# (used in place of the $PASAHOME/pasa_conf/conf.txt file) -# (and allows for users to have their own unique mysql connection info) -# (instead of the pasa role account) -# -# -d flag, Debug -# -h flag, print this option menu and quit -# -######### -# -# // Transcript alignment clustering options (clusters are fed into the PASA assembler): -# -# By default, clusters together transcripts based on any overlap (even 1 base!). -# -# Alternatives: -# -# --stringent_alignment_overlap (suggested: 30.0) overlapping transcripts must have this min % overlap to be clustered. -# -# --gene_overlap (suggested: 50.0) transcripts overlapping existing gene annotations are clustered. Intergenic alignments are clustered by default mechanism. -# * if --gene_overlap, must also specify --annots with annotations in recognizable format (gtf, gff3, or data adapted) (just examines 'gene' rows, though). -# -# -# -# --INVALIDATE_SINGLE_EXON_ESTS :invalidates single exon ests so that none can be built into pasa assemblies. -# -# -# --transcribed_is_aligned_orient flag for strand-specific RNA-Seq assemblies, the aligned orientation should correspond to the transcribed orientation. -# -# -################ -# -# // Annotation comparison options (used in conjunction with -A at top). -# -# -L load annotations (use in conjunction with --annots) -# --annots existing gene annotations in recognized format (gtf, gff3, or custom adapted). -# --GENETIC_CODE (default: universal, options: Euplotes, Tetrahymena, Candida, Acetabularia) -# -###################### Process Args and Options ##################### -``` -
-
- - -#### To address the warning messages... -followed the tact [here](https://stackoverflow.com/questions/66662820/m1-docker-preview-and-keycloak-images-platform-linux-amd64-does-not-match-th) -```bash -#!/bin/bash -#DONTRUN - -docker run \ - --rm -it \ - --platform linux/amd64 \ - -v "/tmp":"/tmp" \ - -v "$(pwd)":"/$(basename "$(pwd)")" \ - pasapipeline/pasapipeline:latest \ - /usr/local/src/PASApipeline/Launch_PASA_pipeline.pl -h -``` -The warning message is now gone -
-
- - -## On running `PasaWeb` via `Docker` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -pwd -# /Users/kalavatt/projects-etc/2022_transcriptome-construction/results/2022-1201/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -docker run \ - --rm -it \ - --platform linux/amd64 \ - -v "/tmp":"/tmp" \ - -v "$(pwd)":"/$(basename "$(pwd)")" \ - -p "9000":"9000" \ - pasapipeline/pasapipeline:latest \ - /usr/local/src/PASApipeline/run_PasaWeb.pl 9000 -``` - -
-Click to view: Error message printed to terminal - -```txt -❯ docker run \ -> --rm -it \ -> --platform linux/amd64 \ -> -v "/tmp":"/tmp" \ -> -v "$(pwd)":"/$(basename "$(pwd)")" \ -> -p "9000":"9000" \ -> pasapipeline/pasapipeline:latest \ -> /usr/local/src/PASApipeline/run_PasaWeb.pl 9000 -Error, cannot locate 'lighttpd' program. Be sure to have it installed and accessible from your PATH env var at /usr/local/src/PASApipeline/run_PasaWeb.pl line 29. -``` -
-
- - -### To resolve the error try installing `lighttpd` into `Trinity_env` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -Trinity_env -# mamba install -c conda-forge lighttpd # Doesn't work -brew install lighttpd -``` - -
-Click to view: lighttpd installation messages printed to terminal - -```txt -❯ brew install lighttpd -Running `brew update --auto-update`... -==> Auto-updated Homebrew! -Updated 1 tap (homebrew/core). -==> New Formulae -ansible@6 cargo-deny cpuid fgbio httm kubent metals osv-scanner retdec snakefmt steampipe txt2man -aribb24 clitest dotnet@6 gf ibazel lemmeknow mimirtool pdf-diff ruby@3.1 sniffnet stepci video-compare -bossa cloudflare-wrangler2 dufs ghc@9.2 jbang libfyaml mpfrcx php@8.1 sapling souffle stuffbin wikibase-cli -brpc clusterawsadm emqx go-task jreleaser libisofs naga-cli portablegl secp256k1 spectral-cli stylelint zf -buf cocogitto envd gobackup jscpd licensed nap protolint seven-kingdoms speedbump syft -busted code-cli erigon grammarly-languageserver keploy luacheck nemu prowler skaffold@1.39 sql-language-server syslog-ng -cargo-about cog evtx hermit kubefirst marksman oauth2c psysh skeema standard tproxy - -You have 29 outdated formulae installed. -You can upgrade them with brew upgrade -or list them with brew outdated. - -==> Fetching dependencies for lighttpd: openssl@1.1, openldap and pcre2 -==> Fetching openssl@1.1 -==> Downloading https://ghcr.io/v2/homebrew/core/openssl/1.1/manifests/1.1.1s -######################################################################## 100.0% -==> Downloading https://ghcr.io/v2/homebrew/core/openssl/1.1/blobs/sha256:3a7812321f40490623859b1c31644c6f3ba1b76c1ca7f780b9413b912e1b1415 -==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sha256:3a7812321f40490623859b1c31644c6f3ba1b76c1ca7f780b9413b912e1b1415?se=2023-01-07T00%3A05%3A00Z&sig=35h01fhJ9Sl72K4rcQ5thkBKS0mk2JtWpCu6%2BxESRzk%3D&sp=r&spr=https&sr=b&sv=2019-12-12 -######################################################################## 100.0% -==> Fetching openldap -==> Downloading https://ghcr.io/v2/homebrew/core/openldap/manifests/2.6.3 -######################################################################## 100.0% -==> Downloading https://ghcr.io/v2/homebrew/core/openldap/blobs/sha256:db25c7e317ccf5ca1282b9ab4ef178f3bca979c0d6ace9b03161c97d1699f5f4 -==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sha256:db25c7e317ccf5ca1282b9ab4ef178f3bca979c0d6ace9b03161c97d1699f5f4?se=2023-01-07T00%3A05%3A00Z&sig=Ekma8dkpcEvVlMOGUGC9m04Es6BrpRaXFOJ7%2BAG4gIk%3D&sp=r&spr=https&sr=b&sv=2019-12-12 -######################################################################## 100.0% -==> Fetching pcre2 -==> Downloading https://ghcr.io/v2/homebrew/core/pcre2/manifests/10.42 -######################################################################## 100.0% -==> Downloading https://ghcr.io/v2/homebrew/core/pcre2/blobs/sha256:8423a338c590ab1a6f265b39a9d1a67ab1361a586f0e494a8c9555cff2867536 -==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sha256:8423a338c590ab1a6f265b39a9d1a67ab1361a586f0e494a8c9555cff2867536?se=2023-01-07T00%3A05%3A00Z&sig=UH9jEW9scz%2B4VIEm9avNjMwpjj0ziVJosT9J0UzQVHU%3D&sp=r&spr=https&sr=b&sv=2019-12-12 -######################################################################## 100.0% -==> Fetching lighttpd -==> Downloading https://ghcr.io/v2/homebrew/core/lighttpd/manifests/1.4.68 -######################################################################## 100.0% -==> Downloading https://ghcr.io/v2/homebrew/core/lighttpd/blobs/sha256:1a30aefdaab4819bee28c3f63da0867f0031f825cd4dac522744b4d19162bc29 -==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sha256:1a30aefdaab4819bee28c3f63da0867f0031f825cd4dac522744b4d19162bc29?se=2023-01-07T00%3A05%3A00Z&sig=W6MqyK7YOqYUpOqn4oqdZd%2BG6xaTn68LX5RcEp%2Ftuxc%3D&sp=r&spr=https&sr=b&sv=2019-12-12 -######################################################################## 100.0% -==> Installing dependencies for lighttpd: openssl@1.1, openldap and pcre2 -==> Installing lighttpd dependency: openssl@1.1 -==> Pouring openssl@1.1--1.1.1s.arm64_ventura.bottle.tar.gz -🍺 /opt/homebrew/Cellar/openssl@1.1/1.1.1s: 8,101 files, 18MB -==> Installing lighttpd dependency: openldap -==> Pouring openldap--2.6.3.arm64_ventura.bottle.tar.gz -🍺 /opt/homebrew/Cellar/openldap/2.6.3: 83 files, 6.9MB -==> Installing lighttpd dependency: pcre2 -==> Pouring pcre2--10.42.arm64_ventura.bottle.tar.gz -🍺 /opt/homebrew/Cellar/pcre2/10.42: 230 files, 6.2MB -==> Installing lighttpd -==> Pouring lighttpd--1.4.68.arm64_ventura.bottle.tar.gz -==> Caveats -Docroot is: /opt/homebrew/var/www - -The default port has been set in /opt/homebrew/etc/lighttpd/lighttpd.conf to 8080 so that -lighttpd can run without sudo. - -To restart lighttpd after an upgrade: - brew services restart lighttpd -Or, if you don't want/need a background service you can just run: - /opt/homebrew/opt/lighttpd/bin/lighttpd -D -f /opt/homebrew/etc/lighttpd/lighttpd.conf -==> Summary -🍺 /opt/homebrew/Cellar/lighttpd/1.4.68: 67 files, 2.8MB -==> Running `brew cleanup lighttpd`... -Disable this behaviour by setting HOMEBREW_NO_INSTALL_CLEANUP. -Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`). -==> Upgrading 1 dependent of upgraded formulae: -Disable this behaviour by setting HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK. -Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`). -git 2.38.1 -> 2.39.0 -==> Fetching git -==> Downloading https://ghcr.io/v2/homebrew/core/git/manifests/2.39.0 -######################################################################## 100.0% -==> Downloading https://ghcr.io/v2/homebrew/core/git/blobs/sha256:008095cdb07f1bbb0020249e3f3077322eaad0f16e3fc9bc2214cfa991cc58ed -==> Downloading from https://pkg-containers.githubusercontent.com/ghcr1/blobs/sha256:008095cdb07f1bbb0020249e3f3077322eaad0f16e3fc9bc2214cfa991cc58ed?se=2023-01-07T00%3A05%3A00Z&sig=XHhYjysN7sQk75RlC4Y2C99D9s8PnsjoaDVj%2FF3dwFM%3D&sp=r&spr=https&sr=b&sv=2019-12-12 -######################################################################## 100.0% -==> Upgrading git - 2.38.1 -> 2.39.0 - -==> Pouring git--2.39.0.arm64_ventura.bottle.tar.gz -==> Caveats -The Tcl/Tk GUIs (e.g. gitk, git-gui) are now in the `git-gui` formula. -Subversion interoperability (git-svn) is now in the `git-svn` formula. - -zsh completions and functions have been installed to: - /opt/homebrew/share/zsh/site-functions -==> Summary -🍺 /opt/homebrew/Cellar/git/2.39.0: 1,607 files, 48MB -==> Running `brew cleanup git`... -Removing: /opt/homebrew/Cellar/git/2.38.1... (1,592 files, 48.1MB) -Removing: /Users/kalavatt/Library/Caches/Homebrew/git--2.38.1... (17.2MB) -==> Checking for dependents of upgraded formulae... -==> No broken dependents found! -==> `brew cleanup` has not been run in the last 30 days, running now... -Disable this behaviour by setting HOMEBREW_NO_INSTALL_CLEANUP. -Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`). -Removing: /Users/kalavatt/Library/Caches/Homebrew/file-formula--5.43... (42.7KB) -Removing: /Users/kalavatt/Library/Caches/Homebrew/libcbor--0.9.0... (33.5KB) -Removing: /Users/kalavatt/Library/Caches/Homebrew/libmagic--5.43... (1MB) -Removing: /Users/kalavatt/Library/Caches/Homebrew/libunistring--1.0... (1.6MB) -Removing: /Users/kalavatt/Library/Caches/Homebrew/ncurses--6.3... (2.3MB) -Removing: /opt/homebrew/Cellar/openssl@1.1/1.1.1q... (8,097 files, 18MB) -Removing: /opt/homebrew/Cellar/pcre2/10.40... (230 files, 6.1MB) -Removing: /Users/kalavatt/Library/Caches/Homebrew/pcre2--10.40... (2.0MB) -Removing: /Users/kalavatt/Library/Caches/Homebrew/python@3.10--3.10.8... (14.7MB) -Removing: /Users/kalavatt/Library/Caches/Homebrew/shellcheck--0.8.0... (13.8MB) -Removing: /Users/kalavatt/Library/Logs/Homebrew/shellcheck... (64B) -Pruned 0 symbolic links and 2 directories from /opt/homebrew -==> Caveats -==> lighttpd -Docroot is: /opt/homebrew/var/www - -The default port has been set in /opt/homebrew/etc/lighttpd/lighttpd.conf to 8080 so that -lighttpd can run without sudo. - -To restart lighttpd after an upgrade: - brew services restart lighttpd -Or, if you don't want/need a background service you can just run: - /opt/homebrew/opt/lighttpd/bin/lighttpd -D -f /opt/homebrew/etc/lighttpd/lighttpd.conf -==> git -The Tcl/Tk GUIs (e.g. gitk, git-gui) are now in the `git-gui` formula. -Subversion interoperability (git-svn) is now in the `git-svn` formula. - -zsh completions and functions have been installed to: - /opt/homebrew/share/zsh/site-functions -``` -
-
- - -#### Try things again after having installed `lighttpd` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -docker run \ - --rm -it \ - --platform linux/amd64 \ - -v "/tmp":"/tmp" \ - -v "$(pwd)":"/$(basename "$(pwd)")" \ - -p "9000":"9000" \ - pasapipeline/pasapipeline:latest \ - /usr/local/src/PASApipeline/run_PasaWeb.pl 9000 -``` -Still encountering the error - - -#### Perform troubleshooting -...following the advice [here (someone has filed an issue about it on the PASApipeline GitHub repo)](https://github.com/PASApipeline/PASApipeline/issues/251) -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -docker pull pasapipeline/pasapipeline:2.5.2-dev - -docker run \ - --rm -it \ - --platform linux/amd64 \ - -v "/tmp":"/tmp" \ - -v "$(pwd)":"/$(basename "$(pwd)")" \ - -p "9000":"9000" \ - pasapipeline/pasapipeline:2.5.2-dev \ - /usr/local/src/PASApipeline/run_PasaWeb.pl 9000 -``` - -
-Click to view: Messages printed to terminal - -```txt -2.5.2-dev: Pulling from pasapipeline/pasapipeline -16ec32c2132b: Already exists -b7372f0e4c7e: Already exists -4b6435ab903e: Already exists -bb3ed4ec7a4c: Already exists -a43d589f1366: Already exists -aa307d929b17: Already exists -d3c331b9da8c: Already exists -39c12f722616: Already exists -97613b9eaeb3: Pull complete -6709031ebd7d: Pull complete -651ada37e8a6: Pull complete -00710f866793: Pull complete -cd5891bb7e20: Pull complete -Digest: sha256:55b93951b4f3f5c4abc822221ccd6e428b495c2f0ee4b5f90e844d02063adade -Status: Downloaded newer image for pasapipeline/pasapipeline:2.5.2-dev -docker.io/pasapipeline/pasapipeline:2.5.2-dev - -❯ docker run \ -> --rm -it \ -> --platform linux/amd64 \ -> -v "/tmp":"/tmp" \ -> -v "$(pwd)":"/$(basename "$(pwd)")" \ -> -p "9000":"9000" \ -> pasapipeline/pasapipeline:2.5.2-dev \ -> /usr/local/src/PASApipeline/run_PasaWeb.pl 9000 -/usr/sbin/lighttpd -D -f /usr/local/src/PASApipeline/PasaWeb.conf/lighttpd.conf.port9000 -2023-01-06 19:08:05: (server.c.1488) server started (lighttpd/1.4.55) -``` -
-
- - -##### Using a web browser such as `Chrome`, go to `http://localhost:9000/` - - -##### Unable to connect it to the `sqlite` database, so try changing the mounting -Input the below path to `PASAweb` (`localhost:9000`) -```bash -pwd -# /Users/kalavatt/projects-etc/2022_transcriptome-construction/results/2022-1201/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -docker run \ - --rm -it \ - --platform linux/amd64 \ - -v "/tmp":"/tmp" \ - -v "$(pwd)":"$(pwd)" \ - -p "9000":"9000" \ - pasapipeline/pasapipeline:2.5.2-dev \ - /usr/local/src/PASApipeline/run_PasaWeb.pl 9000 -``` -It works! - - -#### Change directories to check another `sqlite` database -Input the below path to `PASAweb` (`localhost:9000`) -```bash -cd ../trinity_5781-5782_Q_IP_merged.rcor.multi-hit-mode_100_Local/ -pwd -# /Users/kalavatt/projects-etc/2022_transcriptome-construction/results/2022-1201/trinity_5781-5782_Q_IP_merged.rcor.multi-hit-mode_100_Local - -# Input the above string (without the hash) to PASAweb (localhost:9000) - -docker run \ - --rm -it \ - --platform linux/amd64 \ - -v "/tmp":"/tmp" \ - -v "$(pwd)":"$(pwd)" \ - -p "9000":"9000" \ - pasapipeline/pasapipeline:2.5.2-dev \ - /usr/local/src/PASApipeline/run_PasaWeb.pl 9000 -``` -See additional details in [`AG_emails-notes.md`](./AG_emails-notes.md) -
diff --git a/results/2022-1201/work_PASA_un_trim_trim-rcor_gene-overlap.md b/results/2022-1201/work_PASA_un_trim_trim-rcor_gene-overlap.md deleted file mode 100644 index 154a56f..0000000 --- a/results/2022-1201/work_PASA_un_trim_trim-rcor_gene-overlap.md +++ /dev/null @@ -1,562 +0,0 @@ - -`#work_PASA_un_trim_trim-rcor_gene-overlap.md` - -
-Table of contents - - -1. [Grab a node, go to work directory, set up environment](#grab-a-node-go-to-work-directory-set-up-environment) -1. [Set up arrays for genome-free and -guided `.fasta`s](#set-up-arrays-for-genome-free-and--guided-fastas) - 1. [Run an `echo` test for the arrays](#run-an-echo-test-for-the-arrays) -1. [Set up associative array for experiment files, etc.](#set-up-associative-array-for-experiment-files-etc) -1. [Run `PASA` precursor commands](#run-pasa-precursor-commands) - 1. [Get a `.gff3` ready for precursor commands, calling `Launch_PASA_pipeline.pl`, etc.](#get-a-gff3-ready-for-precursor-commands-calling-launch_pasa_pipelinepl-etc) - 1. [Set up and run loop for precursor commands](#set-up-and-run-loop-for-precursor-commands) -1. [Run `PASA` `Launch_PASA_pipeline.pl`](#run-pasa-launch_pasa_pipelinepl) - 1. [Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl`](#set-up-a-job-submission-script-for-pasa-launch_pasa_pipelinepl) - 1. [Run the job submission script for `PASA` `Launch_PASA_pipeline.pl`](#run-the-job-submission-script-for-pasa-launch_pasa_pipelinepl) - - -
-
- - -## Grab a node, go to work directory, set up environment -
-Click to view - -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 core, default settings - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -Trinity_env -ml Singularity - - -# Define important variables ------------------------------------------------- -value="75.0" #CHANGEABLE #ARG # ( ) 25.0, ( ) 33.0, ( ) 50.0 (*), ( ) 66.0, ( ) 75.0 -d_exp="files_PASA_un_trim_trim-rcor_gene-overlap-${value}" # echo "${d_exp}" -s_name="submit_PASA_un_trim_trim-rcor_gene-overlap-${value}.sh" # echo "${s_name}" -export PASAHOME="/usr/local/src/PASApipeline" -``` -
-
-
- - -## Set up arrays for genome-free and -guided `.fasta`s -```bash -#!/bin/bash -#DONTRUN - -# Create an array of files of interest, including relative paths ------------- -# "Partially processed" genome-guided .fastas ------------ -unset GG_proc -typeset -a GG_proc -while IFS=" " read -r -d $'\0'; do - GG_proc+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_proc[@]}" - -GF_proc="files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_proc -typeset -A T_proc -for i in "${GG_proc[@]}"; do - # echo "Working with ${i}..." - T_proc["${i}"]+="${GF_proc}" - echo "" -done -# echoTest "${!T_proc[@]}" -# echoTest "${T_proc[@]}" - - -# "Fully processed" genome-guided .fastas ---------------- -unset GG_full -typeset -a GG_full -while IFS=" " read -r -d $'\0'; do - GG_full+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-full" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_full[@]}" - -GF_full="files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_full -typeset -A T_full -for i in "${GG_full[@]}"; do - # echo "Working with ${i}..." - T_full["${i}"]+="${GF_full}" - echo "" -done -# echoTest "${!T_full[@]}" -# echoTest "${T_full[@]}" - - -# "Unprocessed" genome-guided .fastas -------------------- -unset GG_un -typeset -a GG_un -while IFS=" " read -r -d $'\0'; do - GG_un+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_unprocessed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_un[@]}" - -GF_un="files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta" -unset T_un -typeset -A T_un -for i in "${GG_un[@]}"; do - T_un["${i}"]+="${GF_un}" - echo "" -done -# echoTest "${!T_un[@]}" -# echoTest "${T_un[@]}" - -#IMPORTANT stackoverflow.com/questions/29161323/how-to-keep-associative-array-order -``` - - -### Run an `echo` test for the arrays -```bash -# How do the assignments look? ----------------------------------------------- -message=""" -# 'Partially processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_proc[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_proc[@]}") - - -# 'Fully processed' genome-guided .fastas ---------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_full[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_full[@]}") - - -# 'Unprocessed' genome-guided .fastas -------------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_un[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_un[@]}") -""" -echo "${message}" -``` -
-
- - -## Set up associative array for experiment files, etc. -```bash -#!/bin/bash -#DONTRUN #CONTINUE - - -# Establish functions for setting up names of directories, files, etc. ------- -name_tx_db() { - # This function parses pertinent path and filename info to determine the - # name of a transcriptome database; it's highly dependent on the context of - # these particular sets of experiments - # - # :param 1: associate array "keys" - # :param 2: number of key to work with - echo "${1}" \ - | cut -d ' ' -f "${2}" \ - | cut -d '/' -f 3- \ - | rev \ - | cut -b 18- \ - | rev -} - - -get_key_or_value() { - #TODO Documentation - echo "${1}" | cut -d ' ' -f "${2}" -} - - -get_GG_or_GF() { - #TODO Documentation - echo "${1}" | cut -d ',' -f "${2}" -} - - -# Make an associative array that connects the information for... ------------- -#+ Trinity-GF .fastas, Trinity-GG .fastas, and PASA databases -unset info_tx_db -typeset -A info_tx_db -for i in "T_proc" "T_full" "T_un"; do - for j in 1 2 3; do - # i="T_proc" - # j=1 - echo "# -------------------------------------" - old_key="get_key_or_value \"\${!${i}[*]}\" ${j}" - echo "${old_key}" - eval "${old_key}" - echo "" - - old_value="get_key_or_value \"\${${i}[*]}\" ${j}" - echo "${old_value}" - eval "${old_value}" - echo "" - - name_of_db="name_tx_db \"\${!${i}[*]}\" ${j}" - echo "${name_of_db}" - eval "${name_of_db}" - echo "" - - new_key="$(echo "$(eval "${name_of_db}")")" - new_val="$(echo "$(eval "${old_key}"),$(eval "${old_value}")")" - info_tx_db["${new_key}"]="${new_val}" - echo "" - done -done - -# Make sure everything is correctly associated -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" -done -``` -
-
- - -## Run `PASA` precursor commands - -### Get a `.gff3` ready for precursor commands, calling `Launch_PASA_pipeline.pl`, etc. -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd "${HOME}/genomes/sacCer3/Ensembl/108/gff3" || \ - echo "cd'ing failed; check on this" - -#TODO Test that *.gff3.gz is present as well -if [[ ! -f "Saccharomyces_cerevisiae.R64-1-1.108.gff3" ]]; then - zcat Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz \ - > Saccharomyces_cerevisiae.R64-1-1.108.gff3 -fi -``` - - -### Set up and run loop for precursor commands -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Be in the main work directory -if [[ \ - "$(pwd)" != "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ -]]; then - mwd -fi - -#LOOP -count=1 -for i in "${!info_tx_db[@]}"; do - echo "# ========================================================================" - echo "# Working with iteration ### ${count} ### =======================================" - echo "# ========================================================================" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# mkdir the experiment directory -----------------------------------------" - echo "# ------------------------------------------------------------------------" - [[ -d "${d_exp}/${i}" ]] \ - || mkdir -p "${d_exp}/${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# cat the .fastas from Trinity genome-free and genome-guided approaches --" - echo "# ------------------------------------------------------------------------" - cmd="cat \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 1) \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 2) \ - > ${d_exp}/${i}/${i}.transcripts.fasta" - echo "${cmd}" - eval "${cmd}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Create .txts for Trinity genome-free transcript accessions -------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - \< {genome_free_fasta} \ - \> {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - < {genome_free_fasta} \ - > {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Clean the transcript sequences -----------------------------------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${d_exp}/${i}/${i}.transcripts.fasta" - - cd "${d_exp}/${i}" - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${i}.transcripts.fasta" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Write .config files for the calls to PASA ------------------------------" - echo "# ------------------------------------------------------------------------" -cat << align_assembly > "./${d_exp}/${i}/${i}.align_assembly.config" -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/${d_exp}/${i}/${i}.pasa.sqlite - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 -align_assembly - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .fasta in each PASA experiment directory --" - echo "# ------------------------------------------------------------------------" - fasta_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" - fasta_SC_sym="$(basename ${fasta_SC_orig})" - cmd="ln -s ${fasta_SC_orig} ${fasta_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${fasta_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory ---" - echo "# ------------------------------------------------------------------------" - gff3_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" - gff3_SC_sym="$(basename ${gff3_SC_orig})" - cmd="ln -s ${gff3_SC_orig} ${gff3_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${gff3_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Print the contents of the given PASA experiment directory --------------" - echo "# ------------------------------------------------------------------------" - ., "./${d_exp}/${i}" - echo "" && echo "" - echo "" && echo "" - - (( count++ )) -done -``` -
-
- - -## Run `PASA` `Launch_PASA_pipeline.pl` - -### Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -threads=8 -if [[ -f "./sh_err_out/${s_name}" ]]; then - rm "./sh_err_out/${s_name}" -fi -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_directory="\${1}" -str_experiment="\${2}" -str_accessions="\${3}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "\${str_directory}/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - "\${PASAHOME}/Launch_PASA_pipeline.pl" \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - -L \\ - --annots "Saccharomyces_cerevisiae.R64-1-1.108.gff3" \\ - --gene_overlap ${value} \\ - --ALIGNERS "blat,gmap,minimap2" \\ - 1> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stderr.log" >&2) - -if [[ -f "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - # cyberciti.biz/faq/linux-unix-script-check-if-file-empty-or-not/ - if [[ -s "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stderr.log" >&2) - else - echo "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf is empty" - echo "Check on things..." - fi -fi - -script -vi "sh_err_out/${s_name}" # :q -``` - - -### Run the job submission script for `PASA` `Launch_PASA_pipeline.pl` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -for i in "${!info_tx_db[@]}"; do - str_experiment="${i}" - str_accessions="$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" - - echo "# =========================================================" - echo "- \${str_experiment} is ${str_experiment}" - echo "- \${str_accessions} is ${str_accessions}" - echo "" - - sbatch "sh_err_out/${s_name}" "${str_experiment}" "${str_accessions}" - sleep 0.25 - echo "" - echo "" -done -``` diff --git a/results/2022-1201/work_PASA_un_trim_trim-rcor_gene-overlap.sh b/results/2022-1201/work_PASA_un_trim_trim-rcor_gene-overlap.sh deleted file mode 100644 index 6a26d48..0000000 --- a/results/2022-1201/work_PASA_un_trim_trim-rcor_gene-overlap.sh +++ /dev/null @@ -1,462 +0,0 @@ -#!/bin/bash - -# work_PASA_un_trim_trim-rcor_gene-overlap.sh -# KA -# 2022-1221 - - -# Create an array of files of interest, including relative paths ------------- -# "Partially processed" genome-guided .fastas ------------ -unset GG_proc -typeset -a GG_proc -while IFS=" " read -r -d $'\0'; do - GG_proc+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_proc[@]}" - -GF_proc="files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_proc -typeset -A T_proc -for i in "${GG_proc[@]}"; do - # echo "Working with ${i}..." - T_proc["${i}"]+="${GF_proc}" - echo "" -done - -# "Fully processed" genome-guided .fastas ---------------- -unset GG_full -typeset -a GG_full -while IFS=" " read -r -d $'\0'; do - GG_full+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-full" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_full[@]}" - -GF_full="files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_full -typeset -A T_full -for i in "${GG_full[@]}"; do - # echo "Working with ${i}..." - T_full["${i}"]+="${GF_full}" - echo "" -done - -# "Unprocessed" genome-guided .fastas -------------------- -unset GG_un -typeset -a GG_un -while IFS=" " read -r -d $'\0'; do - GG_un+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_unprocessed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) - -GF_un="files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta" -unset T_un -typeset -A T_un -for i in "${GG_un[@]}"; do - T_un["${i}"]+="${GF_un}" - echo "" -done - - -# How do the assignments look? ----------------------------------------------- -message=""" -# 'Partially processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_proc[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_proc[@]}") - - -# 'Fully processed' genome-guided .fastas ---------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_full[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_full[@]}") - - -# 'Unprocessed' genome-guided .fastas -------------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_un[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_un[@]}") -""" -echo "${message}" - - -# Establish functions for setting up names of directories, files, etc. ------- -name_tx_db() { - # This function parses pertinent path and filename info to determine the - # name of a transcriptome database; it's highly dependent on the context of - # these particular sets of experiments - # - # :param 1: associate array "keys" - # :param 2: number of key to work with - echo "${1}" \ - | cut -d ' ' -f "${2}" \ - | cut -d '/' -f 3- \ - | rev \ - | cut -b 18- \ - | rev -} - - -get_key_or_value() { - #TODO Documentation - echo "${1}" | cut -d ' ' -f "${2}" -} - - -get_GG_or_GF() { - #TODO Documentation - echo "${1}" | cut -d ',' -f "${2}" -} - - -# Make an associative array that connects the information for... ------------- -#+ Trinity-GF .fastas, Trinity-GG .fastas, and PASA databases -unset info_tx_db -typeset -A info_tx_db -for i in "T_proc" "T_full" "T_un"; do - for j in 1 2 3; do - # i="T_proc" - # j=1 - echo "# -------------------------------------" - old_key="get_key_or_value \"\${!${i}[*]}\" ${j}" - echo "${old_key}" - eval "${old_key}" - echo "" - - old_value="get_key_or_value \"\${${i}[*]}\" ${j}" - echo "${old_value}" - eval "${old_value}" - echo "" - - name_of_db="name_tx_db \"\${!${i}[*]}\" ${j}" - echo "${name_of_db}" - eval "${name_of_db}" - echo "" - - new_key="$(echo "$(eval "${name_of_db}")")" - new_val="$(echo "$(eval "${old_key}"),$(eval "${old_value}")")" - info_tx_db["${new_key}"]="${new_val}" - echo "" - done -done - -# Make sure everything is correctly associated -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" -done - - -# Get a .gff3 ready for precursor and main commands -------------------------- -#TODO Test that *.gff3.gz is present as well -if [[ ! -f "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" ]]; then - zcat "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz" \ - > "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" -fi - - -# Set up and run loop for precursor commands --------------------------------- -values=(10.0 20.0 30.0 40.0 50.0 60.0 70.0 80.0 90.0) -for h in "${values[@]}"; do - # Define important variables -------------------------------------------------- - value="${h}" - d_exp="files_PASA_un_trim_trim-rcor_gene-overlap-${value}" - s_name="submit_PASA_un_trim_trim-rcor_gene-overlap-${value}.sh" - export PASAHOME="/usr/local/src/PASApipeline" - - echo " \${value}: ${value}" - echo " \${d_exp}: ${d_exp}" - echo " \${s_name}: ${s_name}" - echo "\${PASAHOME}: ${PASAHOME}" - echo "" - - - # Set up and run loop for PASA precursor commands ----------------------------- - count=1 - for i in "${!info_tx_db[@]}"; do - echo "# ========================================================================" - echo "# Working with iteration ### ${count} ### =======================================" - echo "# ========================================================================" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# mkdir the experiment directory -----------------------------------------" - echo "# ------------------------------------------------------------------------" - [[ -d "${d_exp}/${i}" ]] \ - || mkdir -p "${d_exp}/${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# cat the .fastas from Trinity genome-free and genome-guided approaches --" - echo "# ------------------------------------------------------------------------" - cmd="cat \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 1) \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 2) \ - > ${d_exp}/${i}/${i}.transcripts.fasta" - echo "${cmd}" - eval "${cmd}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Create .txts for Trinity genome-free transcript accessions -------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - \< {genome_free_fasta} \ - \> {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - < {genome_free_fasta} \ - > {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Clean the transcript sequences -----------------------------------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${d_exp}/${i}/${i}.transcripts.fasta" - - cd "${d_exp}/${i}" - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${i}.transcripts.fasta" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Write .config files for the calls to PASA ------------------------------" - echo "# ------------------------------------------------------------------------" -cat << align_assembly > "./${d_exp}/${i}/${i}.align_assembly.config" -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/${d_exp}/${i}/${i}.pasa.sqlite - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 -align_assembly - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .fasta in each PASA experiment directory --" - echo "# ------------------------------------------------------------------------" - fasta_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" - fasta_SC_sym="$(basename ${fasta_SC_orig})" - cmd="ln -s ${fasta_SC_orig} ${fasta_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${fasta_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory ---" - echo "# ------------------------------------------------------------------------" - gff3_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" - gff3_SC_sym="$(basename ${gff3_SC_orig})" - cmd="ln -s ${gff3_SC_orig} ${gff3_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${gff3_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Print the contents of the given PASA experiment directory --------------" - echo "# ------------------------------------------------------------------------" - ., "./${d_exp}/${i}" - echo "" && echo "" - echo "" && echo "" - - (( count++ )) - done - - - # Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl` --------- - threads=8 - if [[ -f "./sh_err_out/${s_name}" ]]; then - rm "./sh_err_out/${s_name}" - fi -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_directory="\${1}" -str_experiment="\${2}" -str_accessions="\${3}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "\${str_directory}/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - "\${PASAHOME}/Launch_PASA_pipeline.pl" \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - -L \\ - --annots "Saccharomyces_cerevisiae.R64-1-1.108.gff3" \\ - --gene_overlap ${value} \\ - --ALIGNERS "blat,gmap,minimap2" \\ - 1> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stderr.log" >&2) - -if [[ -f "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - # cyberciti.biz/faq/linux-unix-script-check-if-file-empty-or-not/ - if [[ -s "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stderr.log" >&2) - else - echo "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf is empty" - echo "Check on things..." - fi -fi - -script - # vi "sh_err_out/${s_name}" # :q - - - # Run the job submission script for `PASA` `Launch_PASA_pipeline.pl` ---------- - for i in "${!info_tx_db[@]}"; do - echo "" - str_directory="${d_exp}" - str_experiment="${i}" - str_accessions="$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" - - echo "# =========================================================" - echo "- \${str_directory} is ${str_directory}" - echo "- \${str_experiment} is ${str_experiment}" - echo "- \${str_accessions} is ${str_accessions}" - echo "" - - sbatch "sh_err_out/${s_name}" "${str_directory}" "${str_experiment}" "${str_accessions}" - sleep 0.25 - echo "" - echo "" - done -done diff --git a/results/2022-1201/work_PASA_un_trim_trim-rcor_minimal-overlap.md b/results/2022-1201/work_PASA_un_trim_trim-rcor_minimal-overlap.md deleted file mode 100644 index 7eaf9ae..0000000 --- a/results/2022-1201/work_PASA_un_trim_trim-rcor_minimal-overlap.md +++ /dev/null @@ -1,558 +0,0 @@ - -`#work_PASA_un_trim_trim-rcor_minimal-overlap.md` - -
-Table of contents - - -1. [Grab a node, go to work directory, set up environment](#grab-a-node-go-to-work-directory-set-up-environment) -1. [Set up arrays for genome-free and -guided `.fasta`s](#set-up-arrays-for-genome-free-and--guided-fastas) - 1. [Run an `echo` test for the arrays](#run-an-echo-test-for-the-arrays) -1. [Set up associative array for experiment files, etc.](#set-up-associative-array-for-experiment-files-etc) -1. [Run `PASA` precursor commands](#run-pasa-precursor-commands) - 1. [Get a `.gff3` ready for precursor commands, calling `Launch_PASA_pipeline.pl`, etc.](#get-a-gff3-ready-for-precursor-commands-calling-launch_pasa_pipelinepl-etc) - 1. [Set up and run loop for precursor commands](#set-up-and-run-loop-for-precursor-commands) -1. [Run `PASA` `Launch_PASA_pipeline.pl`](#run-pasa-launch_pasa_pipelinepl) - 1. [Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl`](#set-up-a-job-submission-script-for-pasa-launch_pasa_pipelinepl) - 1. [Run the job submission script for `PASA` `Launch_PASA_pipeline.pl`](#run-the-job-submission-script-for-pasa-launch_pasa_pipelinepl) - - -
-
- - -## Grab a node, go to work directory, set up environment -
-Click to view - -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 core, default settings - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -Trinity_env -ml Singularity - - -# Define important variables ------------------------------------------------- -d_exp="files_PASA_un_trim_trim-rcor_minimal-overlap" -s_name="submit_PASA_un_trim_trim-rcor_minimal-overlap.sh" -export PASAHOME="/usr/local/src/PASApipeline" -``` -
-
-
- - -## Set up arrays for genome-free and -guided `.fasta`s -```bash -#!/bin/bash -#DONTRUN - -# Create an array of files of interest, including relative paths ------------- -# "Partially processed" genome-guided .fastas ------------ -unset GG_proc -typeset -a GG_proc -while IFS=" " read -r -d $'\0'; do - GG_proc+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_proc[@]}" - -GF_proc="files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_proc -typeset -A T_proc -for i in "${GG_proc[@]}"; do - # echo "Working with ${i}..." - T_proc["${i}"]+="${GF_proc}" - echo "" -done -# echoTest "${!T_proc[@]}" -# echoTest "${T_proc[@]}" - - -# "Fully processed" genome-guided .fastas ---------------- -unset GG_full -typeset -a GG_full -while IFS=" " read -r -d $'\0'; do - GG_full+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-full" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_full[@]}" - -GF_full="files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_full -typeset -A T_full -for i in "${GG_full[@]}"; do - # echo "Working with ${i}..." - T_full["${i}"]+="${GF_full}" - echo "" -done -# echoTest "${!T_full[@]}" -# echoTest "${T_full[@]}" - - -# "Unprocessed" genome-guided .fastas -------------------- -unset GG_un -typeset -a GG_un -while IFS=" " read -r -d $'\0'; do - GG_un+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_unprocessed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_un[@]}" - -GF_un="files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta" -unset T_un -typeset -A T_un -for i in "${GG_un[@]}"; do - T_un["${i}"]+="${GF_un}" - echo "" -done -# echoTest "${!T_un[@]}" -# echoTest "${T_un[@]}" - -#IMPORTANT stackoverflow.com/questions/29161323/how-to-keep-associative-array-order -``` - - -### Run an `echo` test for the arrays -```bash -# How do the assignments look? ----------------------------------------------- -message=""" -# 'Partially processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_proc[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_proc[@]}") - - -# 'Fully processed' genome-guided .fastas ---------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_full[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_full[@]}") - - -# 'Unprocessed' genome-guided .fastas -------------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_un[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_un[@]}") -""" -echo "${message}" -``` -
-
- - -## Set up associative array for experiment files, etc. -```bash -#!/bin/bash -#DONTRUN #CONTINUE - - -# Establish functions for setting up names of directories, files, etc. ------- -name_tx_db() { - # This function parses pertinent path and filename info to determine the - # name of a transcriptome database; it's highly dependent on the context of - # these particular sets of experiments - # - # :param 1: associate array "keys" - # :param 2: number of key to work with - echo "${1}" \ - | cut -d ' ' -f "${2}" \ - | cut -d '/' -f 3- \ - | rev \ - | cut -b 18- \ - | rev -} - - -get_key_or_value() { - #TODO Documentation - echo "${1}" | cut -d ' ' -f "${2}" -} - - -get_GG_or_GF() { - #TODO Documentation - echo "${1}" | cut -d ',' -f "${2}" -} - - -# Make an associative array that connects the information for... ------------- -#+ Trinity-GF .fastas, Trinity-GG .fastas, and PASA databases -unset info_tx_db -typeset -A info_tx_db -for i in "T_proc" "T_full" "T_un"; do - for j in 1 2 3; do - # i="T_proc" - # j=1 - echo "# -------------------------------------" - old_key="get_key_or_value \"\${!${i}[*]}\" ${j}" - echo "${old_key}" - eval "${old_key}" - echo "" - - old_value="get_key_or_value \"\${${i}[*]}\" ${j}" - echo "${old_value}" - eval "${old_value}" - echo "" - - name_of_db="name_tx_db \"\${!${i}[*]}\" ${j}" - echo "${name_of_db}" - eval "${name_of_db}" - echo "" - - new_key="$(echo "$(eval "${name_of_db}")")" - new_val="$(echo "$(eval "${old_key}"),$(eval "${old_value}")")" - info_tx_db["${new_key}"]="${new_val}" - echo "" - done -done - -# Make sure everything is correctly associated -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" -done -``` -
-
- - -## Run `PASA` precursor commands - -### Get a `.gff3` ready for precursor commands, calling `Launch_PASA_pipeline.pl`, etc. -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd "${HOME}/genomes/sacCer3/Ensembl/108/gff3" || \ - echo "cd'ing failed; check on this" - -#TODO Test that *.gff3.gz is present as well -if [[ ! -f "Saccharomyces_cerevisiae.R64-1-1.108.gff3" ]]; then - zcat Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz \ - > Saccharomyces_cerevisiae.R64-1-1.108.gff3 -fi -``` - - -### Set up and run loop for precursor commands -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Be in the main work directory -if [[ \ - "$(pwd)" != "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ -]]; then - mwd -fi - -#LOOP -count=1 -for i in "${!info_tx_db[@]}"; do - echo "# ========================================================================" - echo "# Working with iteration ### ${count} ### =======================================" - echo "# ========================================================================" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# mkdir the experiment directory -----------------------------------------" - echo "# ------------------------------------------------------------------------" - [[ -d "${d_exp}/${i}" ]] \ - || mkdir -p "${d_exp}/${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# cat the .fastas from Trinity genome-free and genome-guided approaches --" - echo "# ------------------------------------------------------------------------" - cmd="cat \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 1) \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 2) \ - > ${d_exp}/${i}/${i}.transcripts.fasta" - echo "${cmd}" - eval "${cmd}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Create .txts for Trinity genome-free transcript accessions -------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - \< {genome_free_fasta} \ - \> {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - < {genome_free_fasta} \ - > {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Clean the transcript sequences -----------------------------------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${d_exp}/${i}/${i}.transcripts.fasta" - - cd "${d_exp}/${i}" - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${i}.transcripts.fasta" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Write .config files for the calls to PASA ------------------------------" - echo "# ------------------------------------------------------------------------" -cat << align_assembly > "./${d_exp}/${i}/${i}.align_assembly.config" -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/${d_exp}/${i}/${i}.pasa.sqlite - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 -align_assembly - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .fasta in each PASA experiment directory --" - echo "# ------------------------------------------------------------------------" - fasta_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" - fasta_SC_sym="$(basename ${fasta_SC_orig})" - cmd="ln -s ${fasta_SC_orig} ${fasta_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${fasta_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory ---" - echo "# ------------------------------------------------------------------------" - gff3_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" - gff3_SC_sym="$(basename ${gff3_SC_orig})" - cmd="ln -s ${gff3_SC_orig} ${gff3_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${gff3_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Print the contents of the given PASA experiment directory --------------" - echo "# ------------------------------------------------------------------------" - ., "./${d_exp}/${i}" - echo "" && echo "" - echo "" && echo "" - - (( count++ )) -done -``` -
-
- - -## Run `PASA` `Launch_PASA_pipeline.pl` - -### Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -threads=8 -if [[ -f "./sh_err_out/${s_name}" ]]; then - rm "./sh_err_out/${s_name}" -fi -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_directory="\${1}" -str_experiment="\${2}" -str_accessions="\${3}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "\${str_directory}/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - "\${PASAHOME}/Launch_PASA_pipeline.pl" \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - --ALIGNERS "blat,gmap,minimap2" \\ - 1> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stderr.log" >&2) - -if [[ -f "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - # cyberciti.biz/faq/linux-unix-script-check-if-file-empty-or-not/ - if [[ -s "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stderr.log" >&2) - else - echo "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf is empty" - echo "Check on things..." - fi -fi - -script -# vi "sh_err_out/${s_name}" # :q -``` - - -### Run the job submission script for `PASA` `Launch_PASA_pipeline.pl` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -for i in "${!info_tx_db[@]}"; do - str_experiment="${i}" - str_accessions="$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" - - echo "# =========================================================" - echo "- \${str_experiment} is ${str_experiment}" - echo "- \${str_accessions} is ${str_accessions}" - echo "" - - sbatch "sh_err_out/${s_name}" "${str_experiment}" "${str_accessions}" - sleep 0.25 - echo "" - echo "" -done -``` diff --git a/results/2022-1201/work_PASA_un_trim_trim-rcor_minimal-overlap.sh b/results/2022-1201/work_PASA_un_trim_trim-rcor_minimal-overlap.sh deleted file mode 100644 index 44d864c..0000000 --- a/results/2022-1201/work_PASA_un_trim_trim-rcor_minimal-overlap.sh +++ /dev/null @@ -1,455 +0,0 @@ -#!/bin/bash - -# work_PASA_un_trim_trim-rcor_minimal-overlap.sh -# KA -# 2022-1221 - - -# Create an array of files of interest, including relative paths ------------- -# "Partially processed" genome-guided .fastas ------------ -unset GG_proc -typeset -a GG_proc -while IFS=" " read -r -d $'\0'; do - GG_proc+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_proc[@]}" - -GF_proc="files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_proc -typeset -A T_proc -for i in "${GG_proc[@]}"; do - # echo "Working with ${i}..." - T_proc["${i}"]+="${GF_proc}" - echo "" -done - -# "Fully processed" genome-guided .fastas ---------------- -unset GG_full -typeset -a GG_full -while IFS=" " read -r -d $'\0'; do - GG_full+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-full" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_full[@]}" - -GF_full="files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_full -typeset -A T_full -for i in "${GG_full[@]}"; do - # echo "Working with ${i}..." - T_full["${i}"]+="${GF_full}" - echo "" -done - -# "Unprocessed" genome-guided .fastas -------------------- -unset GG_un -typeset -a GG_un -while IFS=" " read -r -d $'\0'; do - GG_un+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_unprocessed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) - -GF_un="files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta" -unset T_un -typeset -A T_un -for i in "${GG_un[@]}"; do - T_un["${i}"]+="${GF_un}" - echo "" -done - - -# How do the assignments look? ----------------------------------------------- -message=""" -# 'Partially processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_proc[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_proc[@]}") - - -# 'Fully processed' genome-guided .fastas ---------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_full[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_full[@]}") - - -# 'Unprocessed' genome-guided .fastas -------------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_un[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_un[@]}") -""" -echo "${message}" - - -# Establish functions for setting up names of directories, files, etc. ------- -name_tx_db() { - # This function parses pertinent path and filename info to determine the - # name of a transcriptome database; it's highly dependent on the context of - # these particular sets of experiments - # - # :param 1: associate array "keys" - # :param 2: number of key to work with - echo "${1}" \ - | cut -d ' ' -f "${2}" \ - | cut -d '/' -f 3- \ - | rev \ - | cut -b 18- \ - | rev -} - - -get_key_or_value() { - #TODO Documentation - echo "${1}" | cut -d ' ' -f "${2}" -} - - -get_GG_or_GF() { - #TODO Documentation - echo "${1}" | cut -d ',' -f "${2}" -} - - -# Make an associative array that connects the information for... ------------- -#+ Trinity-GF .fastas, Trinity-GG .fastas, and PASA databases -unset info_tx_db -typeset -A info_tx_db -for i in "T_proc" "T_full" "T_un"; do - for j in 1 2 3; do - # i="T_proc" - # j=1 - echo "# -------------------------------------" - old_key="get_key_or_value \"\${!${i}[*]}\" ${j}" - echo "${old_key}" - eval "${old_key}" - echo "" - - old_value="get_key_or_value \"\${${i}[*]}\" ${j}" - echo "${old_value}" - eval "${old_value}" - echo "" - - name_of_db="name_tx_db \"\${!${i}[*]}\" ${j}" - echo "${name_of_db}" - eval "${name_of_db}" - echo "" - - new_key="$(echo "$(eval "${name_of_db}")")" - new_val="$(echo "$(eval "${old_key}"),$(eval "${old_value}")")" - info_tx_db["${new_key}"]="${new_val}" - echo "" - done -done - -# Make sure everything is correctly associated -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" -done - - -# Get a .gff3 ready for precursor and main commands -------------------------- -#TODO Test that *.gff3.gz is present as well -if [[ ! -f "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" ]]; then - zcat "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz" \ - > "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" -fi - - -# Set up and run precursor commands ----------------------------------------------- -# Define important variables -------------------------------------------------- -d_exp="files_PASA_un_trim_trim-rcor_minimal-overlap" -s_name="submit_PASA_un_trim_trim-rcor_minimal-overlap.sh" -export PASAHOME="/usr/local/src/PASApipeline" - -echo " \${d_exp}: ${d_exp}" -echo " \${s_name}: ${s_name}" -echo "\${PASAHOME}: ${PASAHOME}" -echo "" - - -# Set up and run loop for PASA precursor commands ----------------------------- -count=1 -for i in "${!info_tx_db[@]}"; do - echo "# ========================================================================" - echo "# Working with iteration ### ${count} ### =======================================" - echo "# ========================================================================" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# mkdir the experiment directory -----------------------------------------" - echo "# ------------------------------------------------------------------------" - [[ -d "${d_exp}/${i}" ]] \ - || mkdir -p "${d_exp}/${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# cat the .fastas from Trinity genome-free and genome-guided approaches --" - echo "# ------------------------------------------------------------------------" - cmd="cat \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 1) \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 2) \ - > ${d_exp}/${i}/${i}.transcripts.fasta" - echo "${cmd}" - eval "${cmd}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Create .txts for Trinity genome-free transcript accessions -------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - \< {genome_free_fasta} \ - \> {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - < {genome_free_fasta} \ - > {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Clean the transcript sequences -----------------------------------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${d_exp}/${i}/${i}.transcripts.fasta" - - cd "${d_exp}/${i}" - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${i}.transcripts.fasta" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Write .config files for the calls to PASA ------------------------------" - echo "# ------------------------------------------------------------------------" -cat << align_assembly > "./${d_exp}/${i}/${i}.align_assembly.config" -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/${d_exp}/${i}/${i}.pasa.sqlite - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 -align_assembly - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .fasta in each PASA experiment directory --" - echo "# ------------------------------------------------------------------------" - fasta_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" - fasta_SC_sym="$(basename ${fasta_SC_orig})" - cmd="ln -s ${fasta_SC_orig} ${fasta_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${fasta_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory ---" - echo "# ------------------------------------------------------------------------" - gff3_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" - gff3_SC_sym="$(basename ${gff3_SC_orig})" - cmd="ln -s ${gff3_SC_orig} ${gff3_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${gff3_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Print the contents of the given PASA experiment directory --------------" - echo "# ------------------------------------------------------------------------" - ., "./${d_exp}/${i}" - echo "" && echo "" - echo "" && echo "" - - (( count++ )) -done - - -# Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl` --------- -threads=8 -if [[ -f "./sh_err_out/${s_name}" ]]; then - rm "./sh_err_out/${s_name}" -fi -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_directory="\${1}" -str_experiment="\${2}" -str_accessions="\${3}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "\${str_directory}/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ ---no-home \\ ---bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ ---bind "\$(pwd)" \\ ---bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ -"\${HOME}/singularity-docker-etc/PASA.sif" \\ - "\${PASAHOME}/Launch_PASA_pipeline.pl" \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - --ALIGNERS "blat,gmap,minimap2" \\ - 1> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stderr.log" >&2) - -if [[ -f "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then -# cyberciti.biz/faq/linux-unix-script-check-if-file-empty-or-not/ -if [[ -s "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stderr.log" >&2) -else - echo "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf is empty" - echo "Check on things..." -fi -fi - -script -# vi "sh_err_out/${s_name}" # :q - - -# Run the job submission script for `PASA` `Launch_PASA_pipeline.pl` ---------- -for i in "${!info_tx_db[@]}"; do - echo "" - str_directory="${d_exp}" - str_experiment="${i}" - str_accessions="$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" - - echo "# =========================================================" - echo "- \${str_directory} is ${str_directory}" - echo "- \${str_experiment} is ${str_experiment}" - echo "- \${str_accessions} is ${str_accessions}" - echo "" - - echo "sbatch \"sh_err_out/${s_name}\" \"${str_directory}\" \"${str_experiment}\" \"${str_accessions}\"" - # sbatch "sh_err_out/${s_name}" "${str_directory}" "${str_experiment}" "${str_accessions}" - # sleep 0.25 - echo "" - echo "" -done diff --git a/results/2022-1201/work_PASA_un_trim_trim-rcor_stringent-alignment-overlap.md b/results/2022-1201/work_PASA_un_trim_trim-rcor_stringent-alignment-overlap.md deleted file mode 100644 index 5591f36..0000000 --- a/results/2022-1201/work_PASA_un_trim_trim-rcor_stringent-alignment-overlap.md +++ /dev/null @@ -1,563 +0,0 @@ - -`#work_PASA_un_trim_trim-rcor_stringent-alignment-overlap.md` - -
-Table of contents - - -1. [Grab a node, go to work directory, set up environment](#grab-a-node-go-to-work-directory-set-up-environment) -1. [Set up arrays for genome-free and -guided `.fasta`s](#set-up-arrays-for-genome-free-and--guided-fastas) - 1. [Run an `echo` test for the arrays](#run-an-echo-test-for-the-arrays) -1. [Set up associative array for experiment files, etc.](#set-up-associative-array-for-experiment-files-etc) -1. [Run `PASA` precursor commands](#run-pasa-precursor-commands) - 1. [Get a `.gff3` ready for precursor commands, calling `Launch_PASA_pipeline.pl`, etc.](#get-a-gff3-ready-for-precursor-commands-calling-launch_pasa_pipelinepl-etc) - 1. [Set up and run loop for precursor commands](#set-up-and-run-loop-for-precursor-commands) -1. [Run `PASA` `Launch_PASA_pipeline.pl`](#run-pasa-launch_pasa_pipelinepl) - 1. [Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl`](#set-up-a-job-submission-script-for-pasa-launch_pasa_pipelinepl) - 1. [Run the job submission script for `PASA` `Launch_PASA_pipeline.pl`](#run-the-job-submission-script-for-pasa-launch_pasa_pipelinepl) - - -
-
- - -## Grab a node, go to work directory, set up environment -
-Click to view - -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 core, default settings - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -Trinity_env -ml Singularity - - -# Define important variables ------------------------------------------------- -value="30.0" #CHANGEABLE #ARG # ( ) 10.0, ( ) 20.0, ( ) 30.0 (*), ( ) 40.0, ( ) 50.0 -d_exp="files_PASA_un_trim_trim-rcor_stringent-alignment-overlap-${value}" -s_name="submit_PASA_un_trim_trim-rcor_stringent-alignment-overlap-${value}.sh" -export PASAHOME="/usr/local/src/PASApipeline" -``` -
-
-
- - -## Set up arrays for genome-free and -guided `.fasta`s -```bash -#!/bin/bash -#DONTRUN - -# Create an array of files of interest, including relative paths ------------- -# "Partially processed" genome-guided .fastas ------------ -unset GG_proc -typeset -a GG_proc -while IFS=" " read -r -d $'\0'; do - GG_proc+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_proc[@]}" - -GF_proc="files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_proc -typeset -A T_proc -for i in "${GG_proc[@]}"; do - # echo "Working with ${i}..." - T_proc["${i}"]+="${GF_proc}" - echo "" -done -# echoTest "${!T_proc[@]}" -# echoTest "${T_proc[@]}" - - -# "Fully processed" genome-guided .fastas ---------------- -unset GG_full -typeset -a GG_full -while IFS=" " read -r -d $'\0'; do - GG_full+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-full" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_full[@]}" - -GF_full="files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_full -typeset -A T_full -for i in "${GG_full[@]}"; do - # echo "Working with ${i}..." - T_full["${i}"]+="${GF_full}" - echo "" -done -# echoTest "${!T_full[@]}" -# echoTest "${T_full[@]}" - - -# "Unprocessed" genome-guided .fastas -------------------- -unset GG_un -typeset -a GG_un -while IFS=" " read -r -d $'\0'; do - GG_un+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_unprocessed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_un[@]}" - -GF_un="files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta" -unset T_un -typeset -A T_un -for i in "${GG_un[@]}"; do - T_un["${i}"]+="${GF_un}" - echo "" -done -# echoTest "${!T_un[@]}" -# echoTest "${T_un[@]}" - -#IMPORTANT stackoverflow.com/questions/29161323/how-to-keep-associative-array-order -``` - - -### Run an `echo` test for the arrays -```bash -# How do the assignments look? ----------------------------------------------- -message=""" -# 'Partially processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_proc[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_proc[@]}") - - -# 'Fully processed' genome-guided .fastas ---------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_full[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_full[@]}") - - -# 'Unprocessed' genome-guided .fastas -------------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_un[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_un[@]}") -""" -echo "${message}" -``` -
-
- - -## Set up associative array for experiment files, etc. -```bash -#!/bin/bash -#DONTRUN #CONTINUE - - -# Establish functions for setting up names of directories, files, etc. ------- -name_tx_db() { - # This function parses pertinent path and filename info to determine the - # name of a transcriptome database; it's highly dependent on the context of - # these particular sets of experiments - # - # :param 1: associate array "keys" - # :param 2: number of key to work with - echo "${1}" \ - | cut -d ' ' -f "${2}" \ - | cut -d '/' -f 3- \ - | rev \ - | cut -b 18- \ - | rev -} - - -get_key_or_value() { - #TODO Documentation - echo "${1}" | cut -d ' ' -f "${2}" -} - - -get_GG_or_GF() { - #TODO Documentation - echo "${1}" | cut -d ',' -f "${2}" -} - - -# Make an associative array that connects the information for... ------------- -#+ Trinity-GF .fastas, Trinity-GG .fastas, and PASA databases -unset info_tx_db -typeset -A info_tx_db -for i in "T_proc" "T_full" "T_un"; do - for j in 1 2 3; do - # i="T_proc" - # j=1 - echo "# -------------------------------------" - old_key="get_key_or_value \"\${!${i}[*]}\" ${j}" - echo "${old_key}" - eval "${old_key}" - echo "" - - old_value="get_key_or_value \"\${${i}[*]}\" ${j}" - echo "${old_value}" - eval "${old_value}" - echo "" - - name_of_db="name_tx_db \"\${!${i}[*]}\" ${j}" - echo "${name_of_db}" - eval "${name_of_db}" - echo "" - - new_key="$(echo "$(eval "${name_of_db}")")" - new_val="$(echo "$(eval "${old_key}"),$(eval "${old_value}")")" - info_tx_db["${new_key}"]="${new_val}" - echo "" - done -done - -# Make sure everything is correctly associated -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" -done -``` -
-
- - -## Run `PASA` precursor commands - -### Get a `.gff3` ready for precursor commands, calling `Launch_PASA_pipeline.pl`, etc. -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd "${HOME}/genomes/sacCer3/Ensembl/108/gff3" || \ - echo "cd'ing failed; check on this" - -#TODO Test that *.gff3.gz is present as well -if [[ ! -f "Saccharomyces_cerevisiae.R64-1-1.108.gff3" ]]; then - zcat Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz \ - > Saccharomyces_cerevisiae.R64-1-1.108.gff3 -fi -``` - - -### Set up and run loop for precursor commands -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Be in the main work directory -if [[ \ - "$(pwd)" != "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" \ -]]; then - mwd -fi - -#LOOP -count=1 -for i in "${!info_tx_db[@]}"; do - echo "# ========================================================================" - echo "# Working with iteration ### ${count} ### =======================================" - echo "# ========================================================================" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# mkdir the experiment directory -----------------------------------------" - echo "# ------------------------------------------------------------------------" - [[ -d "${d_exp}/${i}" ]] \ - || mkdir -p "${d_exp}/${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# cat the .fastas from Trinity genome-free and genome-guided approaches --" - echo "# ------------------------------------------------------------------------" - cmd="cat \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 1) \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 2) \ - > ${d_exp}/${i}/${i}.transcripts.fasta" - echo "${cmd}" - eval "${cmd}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Create .txts for Trinity genome-free transcript accessions -------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - \< {genome_free_fasta} \ - \> {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - < {genome_free_fasta} \ - > {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Clean the transcript sequences -----------------------------------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${d_exp}/${i}/${i}.transcripts.fasta" - - cd "${d_exp}/${i}" - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${i}.transcripts.fasta" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Write .config files for the calls to PASA ------------------------------" - echo "# ------------------------------------------------------------------------" -cat << align_assembly > "./${d_exp}/${i}/${i}.align_assembly.config" -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/${d_exp}/${i}/${i}.pasa.sqlite - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 -align_assembly - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .fasta in each PASA experiment directory --" - echo "# ------------------------------------------------------------------------" - fasta_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" - fasta_SC_sym="$(basename ${fasta_SC_orig})" - cmd="ln -s ${fasta_SC_orig} ${fasta_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${fasta_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory ---" - echo "# ------------------------------------------------------------------------" - gff3_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" - gff3_SC_sym="$(basename ${gff3_SC_orig})" - cmd="ln -s ${gff3_SC_orig} ${gff3_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${gff3_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Print the contents of the given PASA experiment directory --------------" - echo "# ------------------------------------------------------------------------" - ., "./${d_exp}/${i}" - echo "" && echo "" - echo "" && echo "" - - (( count++ )) -done -``` -
-
- - -## Run `PASA` `Launch_PASA_pipeline.pl` - -### Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -threads=8 -if [[ -f "./sh_err_out/${s_name}" ]]; then - rm "./sh_err_out/${s_name}" -fi -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_directory="\${1}" -str_experiment="\${2}" -str_accessions="\${3}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "\${str_directory}/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - "\${PASAHOME}/Launch_PASA_pipeline.pl" \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - --stringent_alignment_overlap ${value} \\ - --ALIGNERS "blat,gmap,minimap2" \\ - 1> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stderr.log" >&2) - -if [[ -f "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - # cyberciti.biz/faq/linux-unix-script-check-if-file-empty-or-not/ - if [[ -s "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stderr.log" >&2) - else - echo "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf is empty" - echo "Check on things..." - fi -fi - -script -vi "sh_err_out/${s_name}" # :q -``` - - -### Run the job submission script for `PASA` `Launch_PASA_pipeline.pl` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -for i in "${!info_tx_db[@]}"; do - echo "" - str_directory="${d_exp}" - str_experiment="${i}" - str_accessions="$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" - - echo "# =========================================================" - echo "- \${str_directory} is ${str_directory}" - echo "- \${str_experiment} is ${str_experiment}" - echo "- \${str_accessions} is ${str_accessions}" - echo "" - - # sbatch "sh_err_out/${s_name}" "${str_experiment}" "${str_accessions}" - # sleep 0.25 - echo "" - echo "" -done -``` diff --git a/results/2022-1201/work_PASA_un_trim_trim-rcor_stringent-alignment-overlap.sh b/results/2022-1201/work_PASA_un_trim_trim-rcor_stringent-alignment-overlap.sh deleted file mode 100644 index 5cd5069..0000000 --- a/results/2022-1201/work_PASA_un_trim_trim-rcor_stringent-alignment-overlap.sh +++ /dev/null @@ -1,460 +0,0 @@ -#!/bin/bash - -# work_PASA_un_trim_trim-rcor_stringent-alignment-overlap.sh -# KA -# 2022-1221 - - -# Create an array of files of interest, including relative paths ------------- -# "Partially processed" genome-guided .fastas ------------ -unset GG_proc -typeset -a GG_proc -while IFS=" " read -r -d $'\0'; do - GG_proc+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_proc[@]}" - -GF_proc="files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_proc -typeset -A T_proc -for i in "${GG_proc[@]}"; do - # echo "Working with ${i}..." - T_proc["${i}"]+="${GF_proc}" - echo "" -done - -# "Fully processed" genome-guided .fastas ---------------- -unset GG_full -typeset -a GG_full -while IFS=" " read -r -d $'\0'; do - GG_full+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_processed-full" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) -# echoTest "${GG_full[@]}" - -GF_full="files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Trinity.fasta" -unset T_full -typeset -A T_full -for i in "${GG_full[@]}"; do - # echo "Working with ${i}..." - T_full["${i}"]+="${GF_full}" - echo "" -done - -# "Unprocessed" genome-guided .fastas -------------------- -unset GG_un -typeset -a GG_un -while IFS=" " read -r -d $'\0'; do - GG_un+=( "${REPLY}" ) -done < <(\ - find "files_Trinity_genome-guided/files_unprocessed" \ - -type f \ - -name "*.Trinity-GG.fasta" \ - -print0 | - sort -z -) - -GF_un="files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Trinity.fasta" -unset T_un -typeset -A T_un -for i in "${GG_un[@]}"; do - T_un["${i}"]+="${GF_un}" - echo "" -done - - -# How do the assignments look? ----------------------------------------------- -message=""" -# 'Partially processed' genome-guided .fastas ------------ -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_proc[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_proc[@]}") - - -# 'Fully processed' genome-guided .fastas ---------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_full[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_full[@]}") - - -# 'Unprocessed' genome-guided .fastas -------------------- -#+ Keys (genome-guided Trinity files) -$(echoTest "${!T_un[@]}") - -#+ Values (genome-free Trinity files) -$(echoTest "${T_un[@]}") -""" -echo "${message}" - - -# Establish functions for setting up names of directories, files, etc. ------- -name_tx_db() { - # This function parses pertinent path and filename info to determine the - # name of a transcriptome database; it's highly dependent on the context of - # these particular sets of experiments - # - # :param 1: associate array "keys" - # :param 2: number of key to work with - echo "${1}" \ - | cut -d ' ' -f "${2}" \ - | cut -d '/' -f 3- \ - | rev \ - | cut -b 18- \ - | rev -} - - -get_key_or_value() { - #TODO Documentation - echo "${1}" | cut -d ' ' -f "${2}" -} - - -get_GG_or_GF() { - #TODO Documentation - echo "${1}" | cut -d ',' -f "${2}" -} - - -# Make an associative array that connects the information for... ------------- -#+ Trinity-GF .fastas, Trinity-GG .fastas, and PASA databases -unset info_tx_db -typeset -A info_tx_db -for i in "T_proc" "T_full" "T_un"; do - for j in 1 2 3; do - # i="T_proc" - # j=1 - echo "# -------------------------------------" - old_key="get_key_or_value \"\${!${i}[*]}\" ${j}" - echo "${old_key}" - eval "${old_key}" - echo "" - - old_value="get_key_or_value \"\${${i}[*]}\" ${j}" - echo "${old_value}" - eval "${old_value}" - echo "" - - name_of_db="name_tx_db \"\${!${i}[*]}\" ${j}" - echo "${name_of_db}" - eval "${name_of_db}" - echo "" - - new_key="$(echo "$(eval "${name_of_db}")")" - new_val="$(echo "$(eval "${old_key}"),$(eval "${old_value}")")" - info_tx_db["${new_key}"]="${new_val}" - echo "" - done -done - -# Make sure everything is correctly associated -for i in "${!info_tx_db[@]}"; do - echo "# -------------------------------------" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" -done - - -# Get a .gff3 ready for precursor and main commands -------------------------- -#TODO Test that *.gff3.gz is present as well -if [[ ! -f "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" ]]; then - zcat "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3.gz" \ - > "${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" -fi - - -# Set up and run loop for precursor commands --------------------------------- -values=(10.0 20.0 30.0 40.0 50.0 60.0 70.0 80.0 90.0) -for h in "${values[@]}"; do - # Define important variables -------------------------------------------------- - value="${h}" - d_exp="files_PASA_un_trim_trim-rcor_stringent-alignment-overlap-${value}" - s_name="submit_PASA_un_trim_trim-rcor_stringent-alignment-overlap-${value}.sh" - export PASAHOME="/usr/local/src/PASApipeline" - - echo " \${value}: ${value}" - echo " \${d_exp}: ${d_exp}" - echo " \${s_name}: ${s_name}" - echo "\${PASAHOME}: ${PASAHOME}" - echo "" - - - # Set up and run loop for PASA precursor commands ----------------------------- - count=1 - for i in "${!info_tx_db[@]}"; do - echo "# ========================================================================" - echo "# Working with iteration ### ${count} ### =======================================" - echo "# ========================================================================" - echo "GG: $(get_GG_or_GF "${info_tx_db["${i}"]}" 1)" - echo "GF: $(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" - echo "DB: ${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# mkdir the experiment directory -----------------------------------------" - echo "# ------------------------------------------------------------------------" - [[ -d "${d_exp}/${i}" ]] \ - || mkdir -p "${d_exp}/${i}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# cat the .fastas from Trinity genome-free and genome-guided approaches --" - echo "# ------------------------------------------------------------------------" - cmd="cat \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 1) \ - $(get_GG_or_GF "${info_tx_db["${i}"]}" 2) \ - > ${d_exp}/${i}/${i}.transcripts.fasta" - echo "${cmd}" - eval "${cmd}" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Create .txts for Trinity genome-free transcript accessions -------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - \< {genome_free_fasta} \ - \> {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/misc_utilities/accession_extractor.pl \ - < {genome_free_fasta} \ - > {genome_free_accessions}" \ - ::: d_exp "$(pwd)" \ - ::: genome_free_fasta "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" \ - :::+ genome_free_accessions "${d_exp}/${i}/$(basename "$(get_GG_or_GF "${info_tx_db["${i}"]}" 2)" .fasta).accessions" - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Clean the transcript sequences -----------------------------------------" - echo "# ------------------------------------------------------------------------" - parallel --header : --colsep " " -k -j 1 echo \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${d_exp}/${i}/${i}.transcripts.fasta" - - cd "${d_exp}/${i}" - parallel --header : --colsep " " -k -j 1 \ - "singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/PASA.sif \ - ${PASAHOME}/bin/seqclean \ - {genome_combined}" \ - ::: d_exp "$(pwd)" \ - ::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/${SLURM_JOB_ID}" \ - ::: genome_combined "${i}.transcripts.fasta" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Write .config files for the calls to PASA ------------------------------" - echo "# ------------------------------------------------------------------------" -cat << align_assembly > "./${d_exp}/${i}/${i}.align_assembly.config" -## templated variables to be replaced exist as <__var_name__> - -# Pathname of an SQLite database -# If the environment variable DSN_DRIVER=mysql then it is the name of a MySQL database -DATABASE=${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/${d_exp}/${i}/${i}.pasa.sqlite - - -####################################################### -# Parameters to specify to specific scripts in pipeline -# create a key = "script_name" + ":" + "parameter" -# assign a value as done above. - -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 - -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 -align_assembly - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .fasta in each PASA experiment directory --" - echo "# ------------------------------------------------------------------------" - fasta_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" - fasta_SC_sym="$(basename ${fasta_SC_orig})" - cmd="ln -s ${fasta_SC_orig} ${fasta_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${fasta_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Symlink to the S. cerevisiae .gff3 in each PASA experiment directory ---" - echo "# ------------------------------------------------------------------------" - gff3_SC_orig="${HOME}/genomes/sacCer3/Ensembl/108/gff3/Saccharomyces_cerevisiae.R64-1-1.108.gff3" - gff3_SC_sym="$(basename ${gff3_SC_orig})" - cmd="ln -s ${gff3_SC_orig} ${gff3_SC_sym}" - cd "${d_exp}/${i}" - # unlink "${gff3_SC_sym}" - echo "${cmd}" - eval "${cmd}" - cd - - echo "" && echo "" - - - echo "# ------------------------------------------------------------------------" - echo "# Print the contents of the given PASA experiment directory --------------" - echo "# ------------------------------------------------------------------------" - ., "./${d_exp}/${i}" - echo "" && echo "" - echo "" && echo "" - - (( count++ )) - done - - - # Set up a job submission script for `PASA` `Launch_PASA_pipeline.pl` --------- - threads=8 - if [[ -f "./sh_err_out/${s_name}" ]]; then - rm "./sh_err_out/${s_name}" - fi -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_directory="\${1}" -str_experiment="\${2}" -str_accessions="\${3}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "\${str_directory}/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - "\${PASAHOME}/Launch_PASA_pipeline.pl" \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - --stringent_alignment_overlap ${value} \\ - --ALIGNERS "blat,gmap,minimap2" \\ - 1> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stderr.log" >&2) - -if [[ -f "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - # cyberciti.biz/faq/linux-unix-script-check-if-file-empty-or-not/ - if [[ -s "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stderr.log" >&2) - else - echo "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf is empty" - echo "Check on things..." - fi -fi - -script - # vi "sh_err_out/${s_name}" # :q - - - # Run the job submission script for `PASA` `Launch_PASA_pipeline.pl` ---------- - for i in "${!info_tx_db[@]}"; do - echo "" - str_directory="${d_exp}" - str_experiment="${i}" - str_accessions="$(basename "$(get_GG_or_GF "${info_tx_db[${i}]}" 2)" .fasta).accessions" - - echo "# =========================================================" - echo "- \${str_directory} is ${str_directory}" - echo "- \${str_experiment} is ${str_experiment}" - echo "- \${str_accessions} is ${str_accessions}" - echo "" - - sbatch "sh_err_out/${s_name}" "${str_directory}" "${str_experiment}" "${str_accessions}" - sleep 0.25 - echo "" - echo "" - done -done diff --git a/results/2022-1201/work_Trinity-PASA_unprocessed-vs-preprocessed_miscellaneous.md b/results/2022-1201/work_Trinity-PASA_unprocessed-vs-preprocessed_miscellaneous.md deleted file mode 100644 index 3b03ac8..0000000 --- a/results/2022-1201/work_Trinity-PASA_unprocessed-vs-preprocessed_miscellaneous.md +++ /dev/null @@ -1,615 +0,0 @@ - -# `work_Trinity-PASA_unprocessed-vs-preprocessed_miscellaneous.md` - - - -1. [Work from 2022-1207](#work-from-2022-1207) - 1. [Update `Trinity` `Docker` installation \(as handled by `Singularity`\)](#update-trinity-docker-installation-as-handled-by-singularity) - 1. [Initial attempt with `singularity pull`: Unsuccessful](#initial-attempt-with-singularity-pull-unsuccessful) - 1. [What is the current version of `Trinity`?](#what-is-the-current-version-of-trinity) - 1. [Attempt to update with `singularity build`: Successful](#attempt-to-update-with-singularity-build-successful) - 1. [Now, what is the current version of `Trinity`? `2.15.0`](#now-what-is-the-current-version-of-trinity-2150) - 1. [Attempt to resolve `perl: warning: Setting locale failed`: Unsuccessful](#attempt-to-resolve-perl-warning-setting-locale-failed-unsuccessful) - 1. [Checking `singularity --bind` with `Trinity.sif`](#checking-singularity---bind-with-trinitysif) -1. [Initial work from 2022-1201-1202](#initial-work-from-2022-1201-1202) - - -
- - -## Work from 2022-1207 - -### Update `Trinity` `Docker` installation (as handled by `Singularity`) - -#### Initial attempt with `singularity pull`: Unsuccessful -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -ml Singularity - -cd ~/singularity-docker-etc -pwd # /home/kalavatt/singularity-docker-etc -., -# total 4.5G -# drwxrwx--- 3 kalavatt 227 Nov 23 12:35 ./ -# drwxr-x--- 20 kalavatt 960 Dec 7 10:18 ../ -# -rwxr-x--- 1 kalavatt 80M Nov 23 07:37 lolcow_latest.sif* -# -rwxrwx--- 1 kalavatt 365M Nov 23 09:48 my_r_container.sif* -# -rw-rw---- 1 kalavatt 141 Nov 23 09:14 my.r.singularity.build.def -# drwxrwx--- 2 kalavatt 110 Nov 23 11:51 PASA/ -# -rwxr-x--- 1 kalavatt 418M Nov 23 12:15 PASA.sif* -# -rwxr-x--- 1 kalavatt 310M Nov 23 07:49 r-base-latest.sif* -# -rwxr-x--- 1 kalavatt 2.5G Nov 23 12:35 Trinity.sif* - -singularity pull --arch amd64 library://sylabsed/examples/lolcow:latest -# FATAL: Image file already exists: "lolcow_latest.sif" - will not overwrite - -#NOTE 1/2 Singularity can't be run on Rhino nodes; if you try to do so, you -#NOTE 2/2 get the error copied to the subsequent txt cell - -singularity run ./lolcow_latest.sif -# ________________________________________ -# / It is easy to find fault, if one has \ -# | that disposition. There was once a man | -# | who, not being able to find any other | -# | fault with his coal, complained that | -# | there were too many prehistoric toads | -# | in it. | -# | | -# | -- Mark Twain, "Pudd'nhead Wilson's | -# \ Calendar" / -# ---------------------------------------- -# \ ^__^ -# \ (oo)\_______ -# (__)\ )\/\ -# ||----w | -# || || -``` - -Error fr/attempting to run `Singularity` on a `rhino` node -```txt -Singularity is not allowed on Rhino nodes as it may cause -stability problems. -Please run singularity via sbatch or run grabnode and request at least 4 cores. -``` - - -##### What is the current version of `Trinity`? -If I run `Trinity.sif`, what version does it say the program is? -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -singularity shell Trinity.sif -# Now, inside the container, where the CL prompt begins with "Singularity>" - -pwd -# /home/kalavatt - -which Trinity -# /usr/local/bin/Trinity - -Trinity --version -# perl: warning: Setting locale failed. -# perl: warning: Please check that your locale settings: -# LANGUAGE = "en_US:", -# LC_ALL = (unset), -# LC_CTYPE = "en_US.UTF-8", -# LANG = "en_US.UTF-8" -# are supported and installed on your system. -# perl: warning: Falling back to the standard locale ("C"). -# Trinity version: Trinity-v2.14.0 -# ** NOTE: Latest version of Trinity is Trinity-v2.15.0, and can be obtained at: -# https://github.com/trinityrnaseq/trinityrnaseq/releases -``` - - -#### Attempt to update with `singularity build`: Successful -- `singularity pull` did not work with `lolcow:latest`, but maybe that's because it does not need to be updated? -- Anyway, go ahead and try to update `Trinity`, but use `singularity build` instead of `singularity pull`, which is in keeping with how one would update the container if using `docker` and not `singularity` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -singularity build Trinity.sif docker://trinityrnaseq/trinityrnaseq -# Build target already exists. Do you want to overwrite? [N/y] y -``` - -
-Messages printed to terminal from the call to singularity build - -```txt -INFO: Starting build... -Getting image source signatures -Copying blob eaead16dc43b done -Copying blob b9ce8acf07aa done -Copying blob f4d6a0dff05b done -Copying blob 2fc7d344512b done -Copying blob 165c23a8af11 done -Copying blob 05a6a82dccfc done -Copying blob e63c3daa921e done -Copying blob eed576ee1975 done -Copying blob cc02f0003f80 done -Copying blob ae705a27311c done -Copying blob c5b89da1d080 done -Copying blob e56e00fefb23 done -Copying blob ff5394cc38fd done -Copying blob 16d80274d5a5 done -Copying blob dce5b858b2f8 done -Copying blob 62d61a56e5b4 done -Copying blob 04a8210c5993 done -Copying blob 5b5b5b672a12 done -Copying blob a8cfb322034a done -Copying blob 355a687f4472 done -Copying blob ab56a1a07b27 done -Copying blob 442a52dcc4a8 done -Copying blob b8b16d9816ee done -Copying blob b2774999d455 done -Copying blob 832afdbe384d done -Copying blob a63ead56dad8 done -Copying blob df979e91fe48 done -Copying blob 053cc478afb9 done -Copying blob 937e1a38d6eb done -Copying blob 320a2951a89f done -Copying blob 9c229ab8fe48 done -Copying blob 46c7b04f9cc3 done -Copying blob 3dd3417628c9 done -Copying blob cf95a0a242fa done -Copying blob 5b7ace73427a done -Copying blob e4063d3a165f done -Copying blob 177adb613988 done -Copying blob b5c520afd5b1 done -Copying blob 4e72e75bcfd9 done -Copying blob afc4d5614b46 done -Copying blob 9dc3a85b1d81 done -Copying blob 5f6776a3da99 done -Copying blob ddd8f41a2f34 done -Copying blob 8a98dff63bd3 done -Copying blob 159675122a51 done -Copying blob be707f88e655 done -Copying blob e0e890bd7efb done -Copying blob 1a1f412485ce done -Copying blob 07fba2275c42 done -Copying blob a916db2a0331 done -Copying blob b32406748860 done -Copying config e7ead7ee51 done -Writing manifest to image destination -Storing signatures -2022/12/07 11:19:23 info unpack layer: sha256:eaead16dc43bb8811d4ff450935d607f9ba4baffda4fc110cc402fa43f601d83 -2022/12/07 11:19:24 info unpack layer: sha256:b9ce8acf07aa452c31a55d832a34da8dafe7f76234decccdf2c56393d8964e32 -2022/12/07 11:19:41 info unpack layer: sha256:f4d6a0dff05b1aefff2ab5ac5d93ded574f1ea665749547bd62d6ff6ad43ba32 -2022/12/07 11:19:41 info unpack layer: sha256:2fc7d344512b273515051e9b0bb9fa599d6ec74a552b44cce632880c50df07b7 -2022/12/07 11:19:41 info unpack layer: sha256:165c23a8af119a130c02d4350e69440d767eabcaeaa804237a3bb80d63665690 -2022/12/07 11:19:41 info unpack layer: sha256:05a6a82dccfc630ff1e730113a607cde55cffdcce769f34b4ed96252aa9ad01a -2022/12/07 11:19:46 info unpack layer: sha256:e63c3daa921e687bcbdc8a040fcc426a9f0fae40ea3668248dfc8952481e3127 -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/KernSmooth.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/MASS.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/Matrix.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/boot.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/class.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/cluster.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/codetools.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/foreign.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/lattice.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/mgcv.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/nlme.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/nnet.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/rpart.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/spatial.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:49 warn rootless{usr/local/src/R-4.2.0/src/library/Recommended/survival.tgz} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:50 warn rootless{usr/local/src/R-4.2.0/tests/Pkgs/pkgA} ignoring (usually) harmless EPERM on setxattr "user.rootlesscontainers" -2022/12/07 11:19:51 info unpack layer: sha256:eed576ee19753481a0593a1861c39f17f4f2516cc41ad6bf870a56bbc1ba9964 -2022/12/07 11:19:51 info unpack layer: sha256:cc02f0003f80d81e8eb61c3b2272cb0f09a48c12ce0837b278fedfe9b0e0543e -2022/12/07 11:19:53 info unpack layer: sha256:ae705a27311c947fad1b6c34cdbca677c05fbefb8ab0db998795d1a50ed8a58a -2022/12/07 11:19:53 info unpack layer: sha256:c5b89da1d0805ad765d756c131a35dc7e80bbda033ddd380490f3f75be7ea532 -2022/12/07 11:19:57 info unpack layer: sha256:e56e00fefb23fad94d22f016f6dab5b869b2b5feec9599b01fbedc4e577295a5 -2022/12/07 11:19:57 info unpack layer: sha256:ff5394cc38fd3bf9b25529c368bf94e272a5c97e93a16f966ad3fd43b40d53ed -2022/12/07 11:19:57 info unpack layer: sha256:16d80274d5a52cd9a6bb914b51371b520526ecad67411be617ff9be417bdd5b2 -2022/12/07 11:19:57 info unpack layer: sha256:dce5b858b2f89d3187cc4ac641d3d87b1985065f0d440c45bd33525ae5691cca -2022/12/07 11:19:57 info unpack layer: sha256:62d61a56e5b40148a3cbbf354c04336a1af5fcb84df96369c5d163977a6dda30 -2022/12/07 11:19:57 info unpack layer: sha256:04a8210c59932cab2a156daedca5e57a630a4bab43d9ec5d165726dae70cfc9b -2022/12/07 11:19:59 info unpack layer: sha256:5b5b5b672a1204981f78a5f55efa6c218431e609c475e4cfe30eb23936c60584 -2022/12/07 11:20:00 info unpack layer: sha256:a8cfb322034ade76c8aa168c5a301f7757d05ba7317f7ab1062fc6196f23c414 -2022/12/07 11:20:00 info unpack layer: sha256:355a687f447237e441dfa7269ae166e7076683bb6cd6ebd97ad6918d72b18099 -2022/12/07 11:20:00 info unpack layer: sha256:ab56a1a07b27a6a36bef6bc251f07cac7cb0798668147d3b48eebba8548ad046 -2022/12/07 11:20:00 info unpack layer: sha256:442a52dcc4a8927ba91b3ad6523567184105dbe759bdf7fd3f2e663be3b4cd58 -2022/12/07 11:20:00 info unpack layer: sha256:b8b16d9816ee46548d10ba9ad62327ace27fb560c849b39862981abb204b18f9 -2022/12/07 11:20:00 info unpack layer: sha256:b2774999d4551e28c40f14f6fd989032ddbab66d1ac14ea2a4c7a039a5ba1c4e -2022/12/07 11:20:00 info unpack layer: sha256:832afdbe384d38ff24c05293808f7f4209517cf418cd8566cdb481cd70a0d437 -2022/12/07 11:20:03 info unpack layer: sha256:a63ead56dad8d9fa1cc20a911b50d4945d3c8a5d01a8edc1a1de99d30a7e2300 -2022/12/07 11:20:03 info unpack layer: sha256:df979e91fe487dcefa5a0f37348d94b26e1394083789fe4d170f51cdc0a8b8bb -2022/12/07 11:20:03 info unpack layer: sha256:053cc478afb9190f7251d19d8ee06265e6e9b54a2949d5622594f04f13d5a2a1 -2022/12/07 11:20:04 info unpack layer: sha256:937e1a38d6eb73475fd33354f4c7ccecbbefb209293a4bbcedd239bd1c8d44ea -2022/12/07 11:20:06 info unpack layer: sha256:320a2951a89faeca0dccf3a5b5b2fd28a033dc504757b9734250764f9f5e8dd7 -2022/12/07 11:20:07 info unpack layer: sha256:9c229ab8fe486850b3be7138b44f3f85d980ef2039128220c540a420a6dd8a08 -2022/12/07 11:20:08 info unpack layer: sha256:46c7b04f9cc3e2ab87bd026d5250f75a109e22ff4b6d3ac29e99708e03374244 -2022/12/07 11:20:08 info unpack layer: sha256:3dd3417628c9341a7316bc0511504b6dde6e7619f830292af36af842e044a368 -2022/12/07 11:20:08 info unpack layer: sha256:cf95a0a242fa2b94634745633c6f8b311c7f0c41b32c59a0d545aa3bb003b22c -2022/12/07 11:20:09 info unpack layer: sha256:5b7ace73427a7d29fb1ea0adef59d6760cc0a2561945ec5096bfe425837be958 -2022/12/07 11:20:09 info unpack layer: sha256:e4063d3a165fd76710e3e5b6077fd4b9d0b70abab1d8f611f91e99571e1689ba -2022/12/07 11:20:16 info unpack layer: sha256:177adb613988b2455f7c783af160237421c029fd7dd1aaba8fd25667ce33c5ad -2022/12/07 11:20:18 info unpack layer: sha256:b5c520afd5b1cb5328442da92b33bb1122f7f536705da2a7c23ae818f4a6325b -2022/12/07 11:20:19 info unpack layer: sha256:4e72e75bcfd92f11bf805e36aed1884501e79fd7ab5e93382b692c99b91a03ec -2022/12/07 11:20:19 info unpack layer: sha256:afc4d5614b46beb2b755fa91e2cd1754d9a6fe7d25b3bfabdb0ed2488064f69d -2022/12/07 11:20:21 info unpack layer: sha256:9dc3a85b1d81f6e688df8712a6f7f307363f22be816a3f793f362c70a951b17c -2022/12/07 11:20:23 info unpack layer: sha256:5f6776a3da99faead64e0645d0625e5f0903924dfd8a18635d691950bb963c30 -2022/12/07 11:20:26 info unpack layer: sha256:ddd8f41a2f3418b198bd40ee741f20fe5939511389d658ab19cb668509da02aa -2022/12/07 11:20:26 info unpack layer: sha256:8a98dff63bd3a4ad02a522cf602c4b55b3f8cbcc7db9bb12cf0452acb2abfc6b -2022/12/07 11:20:27 info unpack layer: sha256:159675122a51d88da718f02935ee98e8025ab32614c54a2975358fbd4db0d95f -2022/12/07 11:20:33 info unpack layer: sha256:be707f88e65524b1d37eb5be067a24e4e98def376df9e15223d724aa52801084 -2022/12/07 11:20:33 info unpack layer: sha256:e0e890bd7efb455d77714ee720054ce903b060d11fe6e677a3f85eb46758810d -2022/12/07 11:20:35 info unpack layer: sha256:1a1f412485ce43fdea38e9acd2e2d21b683946685f9464fa700883bc128f9036 -2022/12/07 11:20:37 info unpack layer: sha256:07fba2275c42a938950996b721ebd514a5f6238a2a804ab88c32dccac80464e1 -2022/12/07 11:20:38 info unpack layer: sha256:a916db2a03318b58f6e77249757570f5a505592fa435cffac9f677b0bcd9d6c6 -2022/12/07 11:20:38 info unpack layer: sha256:b32406748860151555f7fa8e202d17a064c81f15f27f52c99ccefb1bb066d44d -INFO: Creating SIF file... -INFO: Build complete: Trinity.sif -``` -
-
- - -##### Now, what is the current version of `Trinity`? `2.15.0` -Now, check on the version `Trinity` in `Trinity.sif` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -singularity shell Trinity.sif - -Singularity> Trinity --version -# perl: warning: Setting locale failed. -# perl: warning: Please check that your locale settings: -# LANGUAGE = "en_US:", -# LC_ALL = (unset), -# LC_CTYPE = "en_US.UTF-8", -# LANG = "en_US.UTF-8" -# are supported and installed on your system. -# perl: warning: Falling back to the standard locale ("C"). -# Trinity version: Trinity-v2.15.0 -# -currently using the latest production release of Trinity. -``` - - -### Attempt to resolve `perl: warning: Setting locale failed`: Unsuccessful -How to resolve "`perl: warning: Setting locale failed`"? -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Still in the Trinity.sif shell... -Singularity> cd / - -Singularity> ls -lhaFG -# total 936K -# drwxr-xr-x 1 kalavatt 60 Dec 7 11:25 ./ -# drwxr-xr-x 1 kalavatt 60 Dec 7 11:25 ../ -# lrwxrwxrwx 1 root 27 Dec 7 11:20 .exec -> .singularity.d/actions/exec* -# lrwxrwxrwx 1 root 26 Dec 7 11:20 .run -> .singularity.d/actions/run* -# lrwxrwxrwx 1 root 28 Dec 7 11:20 .shell -> .singularity.d/actions/shell* -# drwxr-xr-x 5 root 127 Dec 7 11:20 .singularity.d/ -# lrwxrwxrwx 1 root 27 Dec 7 11:20 .test -> .singularity.d/actions/test* -# lrwxrwxrwx 1 root 7 Oct 19 09:47 bin -> usr/bin/ -# drwxr-xr-x 2 root 3 Apr 15 2020 boot/ -# drwxr-xr-x 19 root 4.4K Nov 27 00:17 dev/ -# lrwxrwxrwx 1 root 36 Dec 7 11:20 environment -> .singularity.d/env/90-environment.sh* -# drwxr-xr-x 55 root 1.9K Dec 3 05:46 etc/ -# drwxr-xr-x 1 kalavatt 60 Dec 7 11:25 home/ -# lrwxrwxrwx 1 root 7 Oct 19 09:47 lib -> usr/lib/ -# lrwxrwxrwx 1 root 9 Oct 19 09:47 lib32 -> usr/lib32/ -# lrwxrwxrwx 1 root 9 Oct 19 09:47 lib64 -> usr/lib64/ -# lrwxrwxrwx 1 root 10 Oct 19 09:47 libx32 -> usr/libx32/ -# drwxr-xr-x 2 root 3 Oct 19 09:47 media/ -# drwxr-xr-x 2 root 3 Oct 19 09:47 mnt/ -# drwxr-xr-x 2 root 3 Oct 19 09:47 opt/ -# dr-xr-xr-x 1609 root 0 Nov 21 11:09 proc/ -# drwx------ 5 root 136 Dec 1 10:34 root/ -# drwxr-xr-x 5 root 67 Oct 19 09:50 run/ -# lrwxrwxrwx 1 root 8 Oct 19 09:47 sbin -> usr/sbin/ -# lrwxrwxrwx 1 root 24 Dec 7 11:20 singularity -> .singularity.d/runscript* -# drwxr-xr-x 2 root 3 Oct 19 09:47 srv/ -# dr-xr-xr-x 13 root 0 Dec 6 12:27 sys/ -# drwxrwxrwt 199 root 932K Dec 7 11:26 tmp/ -# drwxr-xr-x 14 root 241 Nov 30 06:37 usr/ -# drwxr-xr-x 11 root 160 Oct 19 09:50 var/ - -Singularity> cat environment -# #!/bin/sh -# # Custom environment shell code should follow - -# medium.com/@khushalbisht/how-to-fix-perl-warning-setting-locale-failed-a16a6dedc3dd -# touch test.txt -# echo "LANGUAGE=en_US.UTF-8" >> test.txt -# echo "LANG=en_US.UTF-8" >> test.txt -# echo "LC_ALL=en_US.UTF-8" >> test.txt -# echo "" >> test.txt -# cat test.txt -# # LANGUAGE=en_US.UTF-8 -# # LANG=en_US.UTF-8 -# # LC_ALL=en_US.UTF-8 -# # -# rm test.txt - -#NOTE 1/2 If I try to do the above in the *.sif, the following messages are -#NOTE 2/2 printed to terminal -# Singularity> touch test.txt -# touch: cannot touch 'test.txt': Read-only file system -# Singularity> echo "LANGUAGE=en_US.UTF-8" >> test.txt -# bash: test.txt: Read-only file system -# Singularity> echo "LANG=en_US.UTF-8" >> test.txt -# bash: test.txt: Read-only file system -# Singularity> echo "LC_ALL=en_US.UTF-8" >> test.txt -# bash: test.txt: Read-only file system -# Singularity> echo "" >> test.txt -# bash: test.txt: Read-only file system -# Singularity> cat test.txt -# cat: test.txt: No such file or directory - -# The problem may not be solvable, or at least it'll take too long to figure -#+ it out now, so come back to it later -Singularity> exit -``` - - -### Checking `singularity --bind` with `Trinity.sif` -```bash -#!/bin/bash -#DONTRUN - -grabnode # 1 - - -# Get into the work directory with the proper environment -------------------- -transcriptome && cd "./results/2022-1201" - -Trinity_env - - -singularity shell \ - --bind /loc/scratch \ - --bind $(pwd) \ - ~/singularity-docker-etc/Trinity.sif -# WARNING: Bind mount '/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 => /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201' overlaps container CWD /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201, may not be available -# Singularity> - -# In the container shell now... -ls -lhaFG /loc/scratch -# total 204K -# drwxr-xr-x 43 root 4.0K Dec 7 12:15 ./ -# drwxr-xr-x 3 kalavatt 60 Dec 7 12:16 ../ -# drwxr-xr-x 2 61515 4.0K Aug 25 2021 36150564/ -# drwxr-xr-x 3 57089 4.0K Dec 1 16:15 5124351/ -# drwxr-xr-x 3 57089 4.0K Dec 1 16:15 5124352/ -# drwxr-xr-x 3 57089 4.0K Dec 1 16:15 5124354/ -# drwxr-xr-x 3 40534 4.0K Apr 11 2022 53441931/ -# drwxr-xr-x 3 75929 4.0K Dec 7 09:17 5405899/ -# drwxr-xr-x 3 75929 4.0K Dec 7 09:23 5405968/ -# drwxr-xr-x 3 75929 4.0K Dec 7 09:23 5405969/ -# drwxr-xr-x 3 75929 4.0K Dec 7 11:37 5412655/ -# drwxr-xr-x 3 75929 4.0K Dec 7 11:38 5412705/ -# drwxr-xr-x 3 75929 4.0K Dec 7 11:38 5412706/ -# drwxr-xr-x 3 75929 4.0K Dec 7 11:38 5412707/ -# drwxr-xr-x 3 75929 4.0K Dec 7 11:38 5412708/ -# drwxr-xr-x 3 75929 4.0K Dec 7 11:48 5413516/ -# drwxr-xr-x 3 75929 4.0K Dec 7 11:48 5413517/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:06 5414542/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:07 5414592/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:07 5414597/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:07 5414661/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:07 5414662/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:07 5414665/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:08 5414673/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:08 5414689/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:08 5414699/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:08 5414700/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:08 5414734/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:08 5414736/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:08 5414737/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:08 5414748/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:08 5414749/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:08 5414750/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:11 5414962/ -# drwxr-xr-x 3 56616 4.0K Dec 7 12:12 5415287/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:13 5415364/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:13 5415400/ -# drwxr-xr-x 2 kalavatt 4.0K Dec 7 12:15 5415469/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:15 5415470/ -# drwxr-xr-x 3 73348 4.0K Dec 7 12:15 5415473/ -# drwx------ 2 9464 4.0K Jan 20 2021 macaque-svc/ -# drwx------ 723 5133 36K Oct 15 23:42 marmoset-svc/ -# drwx------ 6 9277 4.0K Aug 9 17:07 smrtlink/ - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -cd / -ls -lhaFG -# total 288K -# drwxr-xr-x 1 kalavatt 100 Dec 7 12:16 ./ -# drwxr-xr-x 1 kalavatt 100 Dec 7 12:16 ../ -# lrwxrwxrwx 1 root 27 Dec 7 11:20 .exec -> .singularity.d/actions/exec* -# lrwxrwxrwx 1 root 26 Dec 7 11:20 .run -> .singularity.d/actions/run* -# lrwxrwxrwx 1 root 28 Dec 7 11:20 .shell -> .singularity.d/actions/shell* -# drwxr-xr-x 5 root 127 Dec 7 11:20 .singularity.d/ -# lrwxrwxrwx 1 root 27 Dec 7 11:20 .test -> .singularity.d/actions/test* -# lrwxrwxrwx 1 root 7 Oct 19 09:47 bin -> usr/bin/ -# drwxr-xr-x 2 root 3 Apr 15 2020 boot/ -# drwxr-xr-x 17 root 4.4K Nov 14 10:21 dev/ -# lrwxrwxrwx 1 root 36 Dec 7 11:20 environment -> .singularity.d/env/90-environment.sh* -# drwxr-xr-x 55 root 1.9K Dec 3 05:46 etc/ -# drwxr-xr-x 3 kalavatt 60 Dec 7 12:16 fh/ -# drwxr-xr-x 1 kalavatt 60 Dec 7 12:16 home/ -# lrwxrwxrwx 1 root 7 Oct 19 09:47 lib -> usr/lib/ -# lrwxrwxrwx 1 root 9 Oct 19 09:47 lib32 -> usr/lib32/ -# lrwxrwxrwx 1 root 9 Oct 19 09:47 lib64 -> usr/lib64/ -# lrwxrwxrwx 1 root 10 Oct 19 09:47 libx32 -> usr/libx32/ -# drwxr-xr-x 3 kalavatt 60 Dec 7 12:16 loc/ -# drwxr-xr-x 2 root 3 Oct 19 09:47 media/ -# drwxr-xr-x 2 root 3 Oct 19 09:47 mnt/ -# drwxr-xr-x 2 root 3 Oct 19 09:47 opt/ -# dr-xr-xr-x 685 root 0 Sep 10 16:01 proc/ -# drwx------ 5 root 136 Dec 1 10:34 root/ -# drwxr-xr-x 5 root 67 Oct 19 09:50 run/ -# lrwxrwxrwx 1 root 8 Oct 19 09:47 sbin -> usr/sbin/ -# lrwxrwxrwx 1 root 24 Dec 7 11:20 singularity -> .singularity.d/runscript* -# drwxr-xr-x 2 root 3 Oct 19 09:47 srv/ -# dr-xr-xr-x 13 root 0 Nov 26 08:39 sys/ -# drwxrwxrwt 45 root 284K Dec 7 12:17 tmp/ -# drwxr-xr-x 14 root 241 Nov 30 06:37 usr/ -# drwxr-xr-x 11 root 160 Oct 19 09:50 var/ - -cd ~/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 -ls -lhaFG -# total 1.3M -# drwxrws--- 7 kalavatt 795 Dec 7 12:11 ./ -# drwxr-xr-x 3 kalavatt 60 Dec 7 12:16 ../ -# drwxrws--- 2 kalavatt 696 Dec 3 08:57 files_fastq_symlinks/ -# drwxrws--- 7 kalavatt 158 Dec 7 09:54 files_processed/ -# drwxrws--- 9 kalavatt 264 Dec 7 09:54 files_processed-full/ -# drwxrws--- 6 kalavatt 110 Dec 7 09:54 files_unprocessed/ -# -rw-rw---- 1 kalavatt 4.3K Dec 3 15:56 links_TBD.md -# -rw-rw---- 1 kalavatt 2.5K Dec 6 09:57 scratch.sh -# drwxrws--- 3 kalavatt 1.3K Dec 7 09:54 sh_err_out/ -# -rw-rw---- 1 kalavatt 23K Dec 7 11:52 work_Trinity-PASA_unprocessed-vs-preprocessed_miscellaneous.md -# -rw-rw---- 1 kalavatt 5.0K Dec 7 12:18 work_Trinity_genome-guided.md -# -rw-rw---- 1 kalavatt 1018 Dec 7 10:01 work_build-blacklist.md -# -rw-rw---- 1 kalavatt 12K Dec 4 07:29 work_generate-data_alignment-calls_compare-update.md -# -rw-rw---- 1 kalavatt 0 Dec 5 08:20 work_generate-data_compress-fastqs_fix-symlinks.md -# -rw-rw---- 1 kalavatt 54K Dec 7 10:06 work_generate-data_merge-bams.md -# -rw-rw---- 1 kalavatt 42K Dec 5 12:58 work_generate-data_preprocessed-full.md -# -rw-rw---- 1 kalavatt 18K Dec 5 12:16 work_generate-data_preprocessed.md -# -rw-rw---- 1 kalavatt 26K Dec 5 07:26 work_generate-data_unprocessed.md - -exit -``` -
-
- - -## Initial work from 2022-1201-1202 - -
-Initial work from 2022-1201-1202 - -Symlink or copy the files from `2022-1101/` necessary for running `Trinity` - -a. Set up and `cd` into the directory for these experiments, `2022-1201/` -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -transcriptome - -# Coming from the previous results/ directory, 2022-1101/ to establish this -#+ new one: 2022-1201/ -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction - -if [[ -d ./results/2022-1201 ]]; then - cd ./results/2022-1201/ -else - cd .. \ - && mkdir -p ./results/2022-1201/ \ - && cd ./results/2022-1201/ -fi - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 -``` - -b. The following approach to run Trinity/PASA tests with data generated in `results/2022-1101/` was started but ultimately cut because of bugs and inconsistencies with the datasets that result from the rough-draft work of `results/2022-1101/` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -# Set up directories necessary for experiments (can trim this later) -mkdir -p data/{fastqs,bams}/{unprocessed,preprocessed}/{multi-hit-mode,rna-star} - - -# Set up symlinks ------------------------------------------------------------ -d_base="${HOME}/tsukiyamalab/kalavatt" -d_November="${d_base}/2022_transcriptome-construction/results/2022-1101" -d_December="${d_base}/2022_transcriptome-construction/results/2022-1201" - - -# ------------------------------------- -# Bam: unprocessed, multi-hit-mode --- -# ------------------------------------- -d_N_unproc="${d_November}/exp_alignment_STAR_tags" -d_N_unproc_multi="${d_N_unproc}/multi-hit-mode/files_bams" -# ., "${d_N_unproc_multi}" - -d_unproc="${d_December}/data/bams/unprocessed" -d_D_unproc_multi="${d_unproc}/multi-hit-mode" -# ., "${d_D_unproc_multi}" - -ln -s \ - "${d_N_unproc_multi}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam" \ - "${d_D_unproc_multi}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam" - -ln -s \ - "${d_N_unproc_multi}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam.bai" \ - "${d_D_unproc_multi}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam.bai" -# ., "${d_D_unproc_multi}" - - -# ------------------------------------- -# Bam: preprocessed, multi-hit-mode -- -# ------------------------------------- -d_N_prepro="${d_November}/exp_preprocessing" -d_N_prepro_multi="${d_N_prepro}/04b_star-genome-guided" -# ., "${d_N_prepro_multi}" - -d_D_prero="${d_December}/data/bams/preprocessed" -d_D_prepro_multi="${d_D_prero}/multi-hit-mode" -# ., "${d_D_prepro_multi}" - -ln -s \ - "${d_N_prepro_multi}/5781_Q_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.sc_all.bam" \ - "${d_D_prepro_multi}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam" - -ln -s \ - "${d_N_unproc_multi}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam.bai" \ - "${d_D_unproc_multi}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam.bai" -# ., "${d_D_prepro_multi}" - - -# ------------------------------------- -# Bam: unprocessed, rna-star --------- ### Not going to use these files ### -# ------------------------------------- -d_rna="${d_N_unproc}/rna-star/files_bams" -# ., "${d_rna}" - -d_unproc_rna="${d_unproc}/rna-star" -# ., "${d_unproc_rna}" - -ln -s \ - "${d_rna}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam" \ - "${d_unproc_rna}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam" - -ln -s \ - "${d_rna}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam.bai" \ - "${d_unproc_rna}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam.bai" -# ., "${d_unproc_rna}" - -# ------------------------------------- -# Bam: preprocessed, rna-star -------- ### These files do not exist ### -# ------------------------------------- -# d_prero_rna= - - -``` - -c. Observations, next steps when considering the above -- `#NOTE` `#IMPORTANT` Somehow this missed my observations until now: for the `exp_alignment_STAR_tags/` experiments, I used `*_G1_*.fastq.gz`, and not `*_Q_*.fastq.gz` files... -- `#DONE` Let's take the alignment and un- and preprocessing anew, from the beginning... - + `results/2022-1201/work_generate-data_unprocessed.md` - + `results/2022-1201/work_generate-data_preprocessed.md` - + `results/2022-1201/work_generate-data_preprocessed-full.md` -
diff --git a/results/2022-1201/work_Trinity_genome-free.md b/results/2022-1201/work_Trinity_genome-free.md deleted file mode 100644 index 821d95a..0000000 --- a/results/2022-1201/work_Trinity_genome-free.md +++ /dev/null @@ -1,970 +0,0 @@ - -# `work_Trinity_genome-free.md` - -
-Table of contents - - -1. [Set things up and run a trial `echo` test to test the setup](#set-things-up-and-run-a-trial-echo-test-to-test-the-setup) - 1. [Getting file, directory info into a deduplicated associative array](#getting-file-directory-info-into-a-deduplicated-associative-array) - 1. [Running an `echo` test, part #1](#running-an-echo-test-part-1) - 1. [Running an `echo` test, part #2](#running-an-echo-test-part-2) -1. [Build the script for submitting genome-free `Trinity` jobs](#build-the-script-for-submitting-genome-free-trinity-jobs) - 1. [Run `echo` tests](#run-echo-tests) - 1. [Results of `echo` tests](#results-of-echo-tests) -1. [Submit and run genome-free `Trinity` jobs](#submit-and-run-genome-free-trinity-jobs) - 1. [Generate the submission script](#generate-the-submission-script) - 1. [Run the submission script](#run-the-submission-script) -1. [Previous shell script for submitting genome-free `Trinity` jobs](#previous-shell-script-for-submitting-genome-free-trinity-jobs) - - -
-
- - - -## Set things up and run a trial `echo` test to test the setup - -### Getting file, directory info into a deduplicated associative array -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 core and defaults - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -Trinity_env - - -# Create an array of files of interest, including relative paths ------------- -unset d_in_base -typeset -a d_in_base=( - files_unprocessed/fastq*split/Local - files_processed/fastq*split/EndToEnd - files_processed-full/fastq*split/EndToEnd -) -# echoTest "${d_in_base[@]}" -# echo "${#d_in_base[@]}" - - -# Get necessary file/path info into separate arrays ------ -unset f_in -unset d_in -typeset -a f_in -typeset -a d_in -for i in "${d_in_base[@]}"; do - echo "# Working with files in... --------------------------------" - echo "#+ ${i}" - - while IFS=" " read -r -d $'\0'; do - f_in+=( "$(echo "$(basename "${REPLY%.?.fq.gz}")" | cut -d $'_' -f 2-)" ) - d_in+=( "$(dirname "${REPLY}")" ) - done < <(\ - find "${i}" \ - -type f \ - -name "*_Q_IP_*_1_*.?.fq.gz" \ - -print0 - ) - - echo "" -done -echoTest "${f_in[@]}" -echoTest "${d_in[@]}" - - -# Rejoin the path and file info before dedup'ing --------- -unset d_f_rejoin -typeset -a d_f_rejoin -for i in $(seq 0 $(echo "${#f_in[@]}" - 1 | bc)); do - d_f_rejoin+=( "${d_in[${i}]}/${f_in[${i}]}" ) -done -echoTest "${d_f_rejoin[@]}" - - -# Remove duplicate elements from the "rejoin" array ------ -IFS=" " read -r -a d_f_rejoin \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${d_f_rejoin[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -echoTest "${d_f_rejoin[@]}" - - -# "Unjoin" the "rejoin" array ---------------------------- -unset f_in -unset d_in -typeset -a f_in -typeset -a d_in -for i in "${d_f_rejoin[@]}"; do - echo "# Working with... ------------------------------------------" - echo "#+ ${i}" - - f_in+=( "$(basename "${i%.?.fq.gz}")" ) - d_in+=( "$(dirname "${i}")" ) - - echo "" -done -echoTest "${f_in[@]}" -echoTest "${d_in[@]}" - -#NOTE 1/3 The above "unjoin", "rejoin", "unjoin" steps are necessary to maintain -#NOTE 2/3 the equivalent orders for directory paths and corresponding file-name -#NOTE 3/3 snippets -``` - - -### Running an `echo` test, part #1 -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -i=1 -d_f_5781_r1="${d_in[$i]}/5781_${f_in[$i]}.1.fq.gz" -d_f_5781_r2="${d_in[$i]}/5781_${f_in[$i]}.2.fq.gz" -d_f_5782_r1="${d_in[$i]}/5782_${f_in[$i]}.1.fq.gz" -d_f_5782_r2="${d_in[$i]}/5782_${f_in[$i]}.2.fq.gz" - -# echo "${d_in[$i]}" -# echo "${f_in[$i]}" -# -# echo "${d_f_5781_r1}" -# echo "${d_f_5781_r2}" -# echo "${d_f_5782_r1}" -# echo "${d_f_5782_r2}" -# -# ., "${d_f_5781_r1}" -# ., "${d_f_5781_r2}" -# ., "${d_f_5782_r1}" -# ., "${d_f_5782_r2}" - -SLURM_CPUS_ON_NODE=6 # echo "${SLURM_CPUS_ON_NODE}" -intron="1002" # echo "${intron}" -d_base="files_Trinity_genome-free/$(echo "${d_f_5781_r1}" | cut -d "/" -f 1)" # echo "${d_base}" -pre="trinity_5781-5782_$(\ - echo $(basename "${d_f_5781_r1}" ".Aligned.sortedByCoord.out.sc_all.1.fq.gz") \ - | cut -d $'_' -f 2- \ -)" # echo "${pre}" -t_out="${d_base}/${pre}" # echo "${t_out}" - -message=""" - cores ${SLURM_CPUS_ON_NODE} - left_1 ${d_f_5781_r1} - left_2 ${d_f_5782_r1} - right_1 ${d_f_5781_r2} - right_2 ${d_f_5782_r2} - intron ${intron} - directory ${d_base} - prefix ${pre} - experiment ${t_out} -""" -echo "${message}" -``` - -
-Results of echo test #1 printed to terminal - -```txt - cores 6 - left_1 files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - left_2 files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - right_1 files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - right_2 files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - intron 1002 - directory files_Trinity_genome-free/files_processed-full - prefix trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - experiment files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -``` -
-
- - -### Running an `echo` test, part #2 -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -parallel --header : --colsep " " -k -j 1 echo \ - 'singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/Trinity.sif \ - Trinity \ - --verbose \ - --max_memory {j_mem} \ - --CPU {j_cor} \ - --SS_lib_type FR \ - --left {left_1},{left_2} \ - --right {right_1},{right_2} \ - --jaccard_clip \ - --output {t_out} \ - --full_cleanup \ - --min_kmer_cov 1 \ - --min_iso_ratio 0.05 \ - --min_glue 2 \ - --glue_factor 0.05 \ - --max_reads_per_graph 2000 \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200' \ -::: d_exp "$(pwd)" \ -::: d_scr "/loc/scratch" \ -::: j_mem "50G" \ -::: j_cor "${SLURM_CPUS_ON_NODE}" \ -::: left_1 "${d_f_5781_r1}" \ -:::+ left_2 "${d_f_5782_r1}" \ -:::+ right_1 "${d_f_5781_r2}" \ -:::+ right_2 "${d_f_5782_r2}" \ -:::+ t_out "${t_out}" -``` - -
-Results of echo test #2 printed to terminal - -```txt -singularity run --no-home --bind /home/kalavatt/2022_transcriptome-construction_2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --left files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz,files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz --right files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz,files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz --jaccard_clip --output files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 -``` - -Spot check echo test #2 - -```txt -singularity run - --no-home - --bind /home/kalavatt/2022_transcriptome-construction_2022-1201 - --bind /loc/scratch - /home/kalavatt/singularity-docker-etc/Trinity.sif - Trinity - --verbose - --max_memory 50G - --CPU 6 - --SS_lib_type FR - --left files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz,files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - --right files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz,files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - --jaccard_clip - --output files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - --full_cleanup - --min_kmer_cov 1 - --min_iso_ratio 0.05 - --min_glue 2 - --glue_factor 0.05 - --max_reads_per_graph 2000 - --normalize_max_read_cov 200 - --group_pairs_distance 700 - --min_contig_length 200 -``` -
-
-
- - -## Build the script for submitting genome-free `Trinity` jobs - -### Run `echo` tests -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -script_name="echo_submit_Trinity_genome-free.sh" -threads=6 - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -left_1="\${1}" -left_2="\${2}" -right_1="\${3}" -right_2="\${4}" -out="\${5}" - -# module load Singularity/3.5.3 - -parallel --header : --colsep " " -k -j 1 echo \\ - 'singularity run \\ - --no-home \\ - --bind {d_exp} \\ - --bind {d_scr} \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory {j_mem} \\ - --CPU {j_cor} \\ - --SS_lib_type FR \\ - --seqType fq \\ - --left {left_1},{left_2} \\ - --right {right_1},{right_2} \\ - --jaccard_clip \\ - --output {t_out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200' \\ -::: d_exp "\$(pwd)" \\ -::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \\ -::: j_mem "50G" \\ -::: j_cor "\${SLURM_CPUS_ON_NODE}" \\ -::: left_1 "\${left_1}" \\ -:::+ left_2 "\${left_2}" \\ -:::+ right_1 "\${right_1}" \\ -:::+ right_2 "\${right_2}" \\ -:::+ t_out "\${out}" -script -# vi "./sh_err_out/${script_name}" # :q - - -# Running the above... ------------------------------------------------------- -# echoTest "${f_in[@]}" -# echoTest "${d_in[@]}" -for i in $(seq 0 $(echo "${#f_in[@]}" - 1 | bc)); do - # i=1 - d_f_5781_r1="${d_in[$i]}/5781_${f_in[$i]}.1.fq.gz" - d_f_5782_r1="${d_in[$i]}/5782_${f_in[$i]}.1.fq.gz" - d_f_5781_r2="${d_in[$i]}/5781_${f_in[$i]}.2.fq.gz" - d_f_5782_r2="${d_in[$i]}/5782_${f_in[$i]}.2.fq.gz" - echo "# =========================================================" - echo "# Establishing infiles... ----------------------------------" - echo " left_1 ${d_f_5781_r1}" - echo " left_2 ${d_f_5782_r1}" - echo " right_1 ${d_f_5781_r2}" - echo " right_2 ${d_f_5782_r2}" - echo "" - - d_base="files_Trinity_genome-free/$(echo "${d_f_5781_r1}" | cut -d "/" -f 1)" # echo "${d_base}" - pre="trinity_5781-5782_$(\ - echo $(basename "${d_f_5781_r1}" ".Aligned.sortedByCoord.out.sc_all.1.fq.gz") \ - | cut -d $'_' -f 2- \ - )" - t_out="${d_base}/${pre}" - echo "# Establishing outfile... ---------------------------------" - echo " d_base ${d_base}" - echo " pre ${pre}" - echo " t_out ${t_out}" - echo "" - - intron="1002" - echo "# Setting intron parameter --------------------------------" - echo " intron ${intron}" - echo "" - - echo "# Comparing in and out... ---------------------------------" - echo " ${f_in[$i]}" - echo " ${t_out}" - - echo "# =========================================================" - echo "" - - [[ -d "${t_out}" ]] || mkdir -p "${t_out}" - echo "" - - #TODO 1/2 Could add some kind of check to make sure that left_* include - #TODO 2/2 read 1, right_* include read 2 - bash "./sh_err_out/${script_name}" \ - "${d_f_5781_r1}" \ - "${d_f_5782_r1}" \ - "${d_f_5781_r2}" \ - "${d_f_5782_r2}" \ - "${t_out}" - - echo "" - echo "" -done -``` - - -### Results of `echo` tests -
-Results of echo tests printed to terminal - -```txt -# ========================================================= -# Establishing infiles... ---------------------------------- - left_1 files_processed/fastq_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - left_2 files_processed/fastq_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - right_1 files_processed/fastq_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - right_2 files_processed/fastq_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - -# Establishing outfile... --------------------------------- - d_base files_Trinity_genome-free/files_processed - pre trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - t_out files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -# Setting intron parameter -------------------------------- - intron 1002 - -# Comparing in and out... --------------------------------- - Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -# ========================================================= - - -singularity run --no-home --bind /home/kalavatt/2022_transcriptome-construction_2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --left files_processed/fastq_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz,files_processed/fastq_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz --right files_processed/fastq_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz,files_processed/fastq_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz --jaccard_clip --output files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 - - -# ========================================================= -# Establishing infiles... ---------------------------------- - left_1 files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - left_2 files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - right_1 files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - right_2 files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - -# Establishing outfile... --------------------------------- - d_base files_Trinity_genome-free/files_processed-full - pre trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - t_out files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -# Setting intron parameter -------------------------------- - intron 1002 - -# Comparing in and out... --------------------------------- - Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -# ========================================================= - - -singularity run --no-home --bind /home/kalavatt/2022_transcriptome-construction_2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --left files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz,files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz --right files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz,files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz --jaccard_clip --output files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 - - -# ========================================================= -# Establishing infiles... ---------------------------------- - left_1 files_unprocessed/fastq_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz - left_2 files_unprocessed/fastq_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz - right_1 files_unprocessed/fastq_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz - right_2 files_unprocessed/fastq_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz - -# Establishing outfile... --------------------------------- - d_base files_Trinity_genome-free/files_unprocessed - pre trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - t_out files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - -# Setting intron parameter -------------------------------- - intron 1002 - -# Comparing in and out... --------------------------------- - Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all - files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -# ========================================================= - - -singularity run --no-home --bind /home/kalavatt/2022_transcriptome-construction_2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --left files_unprocessed/fastq_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz,files_unprocessed/fastq_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz --right files_unprocessed/fastq_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz,files_unprocessed/fastq_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz --jaccard_clip --output files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 -``` - -Spot-checking the calls to singularity... - -```txt -singularity run - --no-home - --bind /home/kalavatt/2022_transcriptome-construction_2022-1201 - --bind /loc/scratch - /home/kalavatt/singularity-docker-etc/Trinity.sif - Trinity - --verbose - --max_memory 50G - --CPU 6 - --SS_lib_type FR - --left files_processed/fastq_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz,files_processed/fastq_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - --right files_processed/fastq_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz,files_processed/fastq_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - --jaccard_clip - --output files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - --full_cleanup - --min_kmer_cov 1 - --min_iso_ratio 0.05 - --min_glue 2 - --glue_factor 0.05 - --max_reads_per_graph 2000 - --normalize_max_read_cov 200 - --group_pairs_distance 700 - --min_contig_length 200 - -singularity run - --no-home - --bind /home/kalavatt/2022_transcriptome-construction_2022-1201 - --bind /loc/scratch - /home/kalavatt/singularity-docker-etc/Trinity.sif - Trinity - --verbose - --max_memory 50G - --CPU 6 - --SS_lib_type FR - --left files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz,files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - --right files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz,files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - --jaccard_clip - --output files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - --full_cleanup - --min_kmer_cov 1 - --min_iso_ratio 0.05 - --min_glue 2 - --glue_factor 0.05 - --max_reads_per_graph 2000 - --normalize_max_read_cov 200 - --group_pairs_distance 700 - --min_contig_length 200 - -singularity run - --no-home - --bind /home/kalavatt/2022_transcriptome-construction_2022-1201 - --bind /loc/scratch - /home/kalavatt/singularity-docker-etc/Trinity.sif - Trinity - --verbose - --max_memory 50G - --CPU 6 - --SS_lib_type FR - --left files_unprocessed/fastq_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz,files_unprocessed/fastq_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz - --right files_unprocessed/fastq_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz,files_unprocessed/fastq_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz - --jaccard_clip - --output files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - --full_cleanup - --min_kmer_cov 1 - --min_iso_ratio 0.05 - --min_glue 2 - --glue_factor 0.05 - --max_reads_per_graph 2000 - --normalize_max_read_cov 200 - --group_pairs_distance 700 - --min_contig_length 200 -``` -
-
-
- - -## Submit and run genome-free `Trinity` jobs - -### Generate the submission script -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -script_name="submit_Trinity_genome-free.sh" -threads=6 #ABOVE - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -left_1="\${1}" -left_2="\${2}" -right_1="\${3}" -right_2="\${4}" -out="\${5}" - -module load Singularity/3.5.3 - - -# Echo command invocation to STDOUT ------------------------------------------ -parallel --header : --colsep " " -k -j 1 echo \\ - 'singularity run \\ - --no-home \\ - --bind {d_exp} \\ - --bind {d_scr} \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory {j_mem} \\ - --CPU {j_cor} \\ - --SS_lib_type FR \\ - --seqType fq \\ - --left {left_1},{left_2} \\ - --right {right_1},{right_2} \\ - --jaccard_clip \\ - --output {t_out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200' \\ -::: d_exp "\$(pwd)" \\ -::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \\ -::: j_mem "50G" \\ -::: j_cor "\${SLURM_CPUS_ON_NODE}" \\ -::: left_1 "\${left_1}" \\ -:::+ left_2 "\${left_2}" \\ -:::+ right_1 "\${right_1}" \\ -:::+ right_2 "\${right_2}" \\ -:::+ t_out "\${out}" - - -# Run the command ------------------------------------------------------------ -parallel --header : --colsep " " -k -j 1 \\ - 'singularity run \\ - --no-home \\ - --bind {d_exp} \\ - --bind {d_scr} \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory {j_mem} \\ - --CPU {j_cor} \\ - --SS_lib_type FR \\ - --seqType fq \\ - --left {left_1},{left_2} \\ - --right {right_1},{right_2} \\ - --jaccard_clip \\ - --output {t_out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200' \\ -::: d_exp "\$(pwd)" \\ -::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \\ -::: j_mem "50G" \\ -::: j_cor "\${SLURM_CPUS_ON_NODE}" \\ -::: left_1 "\${left_1}" \\ -:::+ left_2 "\${left_2}" \\ -:::+ right_1 "\${right_1}" \\ -:::+ right_2 "\${right_2}" \\ -:::+ t_out "\${out}" -script -# vi "./sh_err_out/${script_name}" # :q -``` - - -### Run the submission script -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -for i in $(seq 0 $(echo "${#f_in[@]}" - 1 | bc)); do - # i=1 - d_f_5781_r1="${d_in[$i]}/5781_${f_in[$i]}.1.fq.gz" - d_f_5782_r1="${d_in[$i]}/5782_${f_in[$i]}.1.fq.gz" - d_f_5781_r2="${d_in[$i]}/5781_${f_in[$i]}.2.fq.gz" - d_f_5782_r2="${d_in[$i]}/5782_${f_in[$i]}.2.fq.gz" - echo "# =========================================================" - echo "# Establishing infiles... ----------------------------------" - echo " left_1 ${d_f_5781_r1}" - echo " left_2 ${d_f_5782_r1}" - echo " right_1 ${d_f_5781_r2}" - echo " right_2 ${d_f_5782_r2}" - echo "" - - d_base="files_Trinity_genome-free/$(echo "${d_f_5781_r1}" | cut -d "/" -f 1)" # echo "${d_base}" - pre="trinity_5781-5782_$(\ - echo $(basename "${d_f_5781_r1}" ".Aligned.sortedByCoord.out.sc_all.1.fq.gz") \ - | cut -d $'_' -f 2- \ - )" - t_out="${d_base}/${pre}" - echo "# Establishing outfile... ---------------------------------" - echo " d_base ${d_base}" - echo " pre ${pre}" - echo " t_out ${t_out}" - echo "" - - intron="1002" - echo "# Setting intron parameter --------------------------------" - echo " intron ${intron}" - echo "" - - echo "# Comparing in and out... ---------------------------------" - echo " ${f_in[$i]}" - echo " ${t_out}" - - echo "# =========================================================" - echo "" - - [[ -d "${t_out}" ]] || mkdir -p "${t_out}" - echo "" - - #TODO 1/2 Could add some kind of check to make sure that left_* include - #TODO 2/2 read 1, right_* include read 2 - sbatch "./sh_err_out/${script_name}" \ - "${d_f_5781_r1}" \ - "${d_f_5782_r1}" \ - "${d_f_5781_r2}" \ - "${d_f_5782_r2}" \ - "${t_out}" - sleep 0.33 - - echo "" - echo "" -done -``` - -
-Messages printed to terminal - -``` -# ========================================================= -# Establishing infiles... ---------------------------------- - left_1 files_processed/fastq_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - left_2 files_processed/fastq_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - right_1 files_processed/fastq_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - right_2 files_processed/fastq_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - -# Establishing outfile... --------------------------------- - d_base files_Trinity_genome-free/files_processed - pre trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - t_out files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -# Setting intron parameter -------------------------------- - intron 1002 - -# Comparing in and out... --------------------------------- - Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - files_Trinity_genome-free/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -# ========================================================= - - -Submitted batch job 5481438 - - -# ========================================================= -# Establishing infiles... ---------------------------------- - left_1 files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - left_2 files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - right_1 files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - right_2 files_processed-full/fastq_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - -# Establishing outfile... --------------------------------- - d_base files_Trinity_genome-free/files_processed-full - pre trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - t_out files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -# Setting intron parameter -------------------------------- - intron 1002 - -# Comparing in and out... --------------------------------- - Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - files_Trinity_genome-free/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -# ========================================================= - - -Submitted batch job 5481439 - - -# ========================================================= -# Establishing infiles... ---------------------------------- - left_1 files_unprocessed/fastq_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz - left_2 files_unprocessed/fastq_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz - right_1 files_unprocessed/fastq_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz - right_2 files_unprocessed/fastq_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz - -# Establishing outfile... --------------------------------- - d_base files_Trinity_genome-free/files_unprocessed - pre trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - t_out files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - -# Setting intron parameter -------------------------------- - intron 1002 - -# Comparing in and out... --------------------------------- - Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all - files_Trinity_genome-free/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -# ========================================================= - - -Submitted batch job 5481440 -``` -
-
-
- - -## Previous shell script for submitting genome-free `Trinity` jobs -
-Click to view previous script, etc. - -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -# Define variables -d_work="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" -d_free="${d_work}/exp_alignment_STAR_tags/rna-star/files_bams" -f_free_1="${d_free}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.1.fq.gz" -f_free_2="${d_free}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.2.fq.gz" -prefix_0="Trinity_trial" -prefix_1="genome-free" -prefix_2="$(echo $(basename "${f_free}") | cut -d . -f 5)" -prefix="${prefix_0}_${prefix_1}_${prefix_2}" -intron=1002 -script="submit-Trinity-trial-genome-free.sh" -d_master="${d_work}/exp_${prefix_0}" -d_exp="${d_master}/exp_${prefix}" - -echo "${d_work}" -echo "${d_free}" -echo "${f_free_1}" -echo "${f_free_2}" -echo "${prefix_0}" -echo "${prefix_1}" -echo "${prefix_2}" -echo "${prefix}" -echo "${intron}" -echo "${script}" -echo "${d_master}" -echo "${d_exp}" - -ls -lhaFG "${d_work}" -ls -lhaFG "${d_free}" -ls -lhaFG "${f_free_1}" -ls -lhaFG "${f_free_2}" -ls -lhaFG "${d_master}" - -# Change and set up directories -cd "${d_work}" || echo "Error: cd'ing failed; check on this" -[[ -d "${d_exp}" ]] || mkdir -p "${d_exp}" - -# For now, use the latest version of Trinity available via FHCC Bioinformatics -ml Trinity/2.12.0-foss-2020b - -# Generate the job-submission script -if [[ -f "${script}" ]]; then rm "${script}"; fi -cat << script > "${script}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=6 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -infile_1="\${1}" -infile_2="\${2}" -outdir="\${3}" -prefix="\${4}" - -echo "echo test:" -echo -e "Trinity \\ \n\ - --max_memory 50G \\ \n\ - --CPU "\${SLURM_CPUS_ON_NODE}" \\ \n\ - --SS_lib_type FR \\ \n\ - --seqType fq \\ \n\ - --left "\${infile_1}" \\ \n\ - --right "\${infile_2}" \\ \n\ - --jaccard_clip \\ \n\ - --output "\${outdir}/\${prefix}" \\ \n\ - --full_cleanup \\ \n\ - --min_kmer_cov 1 \\ \n\ - --min_iso_ratio 0.05 \\ \n\ - --min_glue 2 \\ \n\ - --glue_factor 0.05 \\ \n\ - --max_reads_per_graph 2000 \\ \n\ - --normalize_max_read_cov 200 \\ \n\ - --group_pairs_distance 700 \\ \n\ - --min_contig_length 200" - -Trinity \\ - --max_memory 50G \\ - --CPU "\${SLURM_CPUS_ON_NODE}" \\ - --SS_lib_type FR \\ - --seqType fq \\ - --left "\${infile_1}" \\ - --right "\${infile_2}" \\ - --jaccard_clip \\ - --output "\${outdir}/\${prefix}" \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200 -script -``` -
-
-
- -
-Scrap #1 - -```bash -# Get the file/directory info into an associative array -- -unset f_in_comp -typeset -A f_in_comp -for i in $(seq 0 $(echo "${#f_in[@]}" - 1 | bc)); do - echo " Key ${f_in[$i]}" - echo "Value ${d_in[$i]}" - - f_in_comp[${f_in[$i]}]=${d_in[$i]} - echo "" -done -# echoTest "${!f_in_comp[@]}" # Keys -# echoTest "${f_in_comp[@]}" # Values - -# Check that the keys and values match -for i in "${!f_in_comp[@]}"; do - echo " Key ${i}" - echo "Value ${f_in_comp[$i]}" - echo "" -done -echo "${#f_in_comp[@]}" -``` -
-
- -
-Scrap #2 - -```bash -# x_in="${f_in_comp["Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all"]}" # echo "${x_in}" -# echo "${x_in}" - -x_d_in="${f_in_comp["${f_in[1]}"]}" # echo "${x_d_in}" -echo "${x_d_in}" -# files_processed-full/fastq_trim-rcor-cor_split/EndToEnd - -x_f_in="${f_in[1]}" -echo "${x_f_in}" -# Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -# x_d_in="${d_in[1]}" # echo "${x_d_in}" -# x_f_in="${f_in[1]}" # echo "${x_f_in}" - -echoTest "${d_in[@]}" -echoTest "${f_in[@]}" -``` -
-
diff --git a/results/2022-1201/work_Trinity_genome-free_processed-rcor-only.md b/results/2022-1201/work_Trinity_genome-free_processed-rcor-only.md deleted file mode 100644 index 7ac1344..0000000 --- a/results/2022-1201/work_Trinity_genome-free_processed-rcor-only.md +++ /dev/null @@ -1,678 +0,0 @@ - -# `work_Trinity_genome-free_processed-rcor-only.md` - -
-Table of contents - - -1. [Set things up and run a trial `echo` test to test the setup](#set-things-up-and-run-a-trial-echo-test-to-test-the-setup) - 1. [Getting file, directory info into a deduplicated associative array](#getting-file-directory-info-into-a-deduplicated-associative-array) - 1. [Running an `echo` test, part #1](#running-an-echo-test-part-1) - 1. [Running an `echo` test, part #2](#running-an-echo-test-part-2) -1. [Build the script for submitting genome-free `Trinity` jobs](#build-the-script-for-submitting-genome-free-trinity-jobs) - 1. [Run `echo` tests](#run-echo-tests) - 1. [Results of `echo` tests](#results-of-echo-tests) -1. [Submit and run genome-free `Trinity` jobs](#submit-and-run-genome-free-trinity-jobs) - 1. [Generate the submission script](#generate-the-submission-script) - 1. [Run the submission script](#run-the-submission-script) - - -
-
- - - -## Set things up and run a trial `echo` test to test the setup - -### Getting file, directory info into a deduplicated associative array -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 core and defaults - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -Trinity_env - - -# Create an array of files of interest, including relative paths ------------- -unset d_in_base -typeset -a d_in_base=( - files_processed-rcor-only/fastq*split/Local - files_processed-rcor-only/fastq*split/EndToEnd -) -# echoTest "${d_in_base[@]}" -# echo "${#d_in_base[@]}" - - -# Get necessary file/path info into separate arrays ------ -unset f_in -unset d_in -typeset -a f_in -typeset -a d_in -for i in "${d_in_base[@]}"; do - echo "# Working with files in... --------------------------------" - echo "#+ ${i}" - - while IFS=" " read -r -d $'\0'; do - f_in+=( "$(echo "$(basename "${REPLY%.?.fq.gz}")" | cut -d $'_' -f 2-)" ) - d_in+=( "$(dirname "${REPLY}")" ) - done < <(\ - find "${i}" \ - -type f \ - -name "*_Q_IP_*_1_*.?.fq.gz" \ - -print0 - ) - - echo "" -done -echoTest "${f_in[@]}" -echoTest "${d_in[@]}" - - -# Rejoin the path and file info before dedup'ing --------- -unset d_f_rejoin -typeset -a d_f_rejoin -for i in $(seq 0 $(echo "${#f_in[@]}" - 1 | bc)); do - d_f_rejoin+=( "${d_in[${i}]}/${f_in[${i}]}" ) -done -echoTest "${d_f_rejoin[@]}" - - -# Remove duplicate elements from the "rejoin" array ------ -IFS=" " read -r -a d_f_rejoin \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${d_f_rejoin[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -echoTest "${d_f_rejoin[@]}" - - -# "Unjoin" the "rejoin" array ---------------------------- -unset f_in -unset d_in -typeset -a f_in -typeset -a d_in -for i in "${d_f_rejoin[@]}"; do - echo "# Working with... ------------------------------------------" - echo "#+ ${i}" - - f_in+=( "$(basename "${i%.?.fq.gz}")" ) - d_in+=( "$(dirname "${i}")" ) - - echo "" -done -echoTest "${f_in[@]}" -echoTest "${d_in[@]}" - -#NOTE 1/3 The above "unjoin", "rejoin", "unjoin" steps are necessary to maintain -#NOTE 2/3 the equivalent orders for directory paths and corresponding file-name -#NOTE 3/3 snippets -``` - - -### Running an `echo` test, part #1 -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -i=1 -d_f_5781_r1="${d_in[$i]}/5781_${f_in[$i]}.1.fq.gz" -d_f_5781_r2="${d_in[$i]}/5781_${f_in[$i]}.2.fq.gz" -d_f_5782_r1="${d_in[$i]}/5782_${f_in[$i]}.1.fq.gz" -d_f_5782_r2="${d_in[$i]}/5782_${f_in[$i]}.2.fq.gz" - -# echo "${d_in[$i]}" -# echo "${f_in[$i]}" -# -# echo "${d_f_5781_r1}" -# echo "${d_f_5781_r2}" -# echo "${d_f_5782_r1}" -# echo "${d_f_5782_r2}" -# -# ., "${d_f_5781_r1}" -# ., "${d_f_5781_r2}" -# ., "${d_f_5782_r1}" -# ., "${d_f_5782_r2}" - -SLURM_CPUS_ON_NODE=6 # echo "${SLURM_CPUS_ON_NODE}" -intron="1002" # echo "${intron}" -d_base="files_Trinity_genome-free/$(echo "${d_f_5781_r1}" | cut -d "/" -f 1)" # echo "${d_base}" -pre="trinity_5781-5782_$(\ - echo $(basename "${d_f_5781_r1}" ".Aligned.sortedByCoord.out.sc_all.1.fq.gz") \ - | cut -d $'_' -f 2- \ -)" # echo "${pre}" -t_out="${d_base}/${pre}" # echo "${t_out}" - -message=""" - cores ${SLURM_CPUS_ON_NODE} - left_1 ${d_f_5781_r1} - left_2 ${d_f_5782_r1} - right_1 ${d_f_5781_r2} - right_2 ${d_f_5782_r2} - intron ${intron} - directory ${d_base} - prefix ${pre} - experiment ${t_out} -""" -echo "${message}" -``` - -
-Results of echo test #1 printed to terminal - -```txt - cores 6 - left_1 files_processed-rcor-only/fastq_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz - left_2 files_processed-rcor-only/fastq_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz - right_1 files_processed-rcor-only/fastq_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz - right_2 files_processed-rcor-only/fastq_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz - intron 1002 - directory files_Trinity_genome-free/files_processed-rcor-only - prefix trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local - experiment files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local -``` -
-
- - -### Running an `echo` test, part #2 -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -parallel --header : --colsep " " -k -j 1 echo \ - 'singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/Trinity.sif \ - Trinity \ - --verbose \ - --max_memory {j_mem} \ - --CPU {j_cor} \ - --SS_lib_type FR \ - --left {left_1},{left_2} \ - --right {right_1},{right_2} \ - --jaccard_clip \ - --output {t_out} \ - --full_cleanup \ - --min_kmer_cov 1 \ - --min_iso_ratio 0.05 \ - --min_glue 2 \ - --glue_factor 0.05 \ - --max_reads_per_graph 2000 \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200' \ -::: d_exp "$(pwd)" \ -::: d_scr "/loc/scratch" \ -::: j_mem "50G" \ -::: j_cor "${SLURM_CPUS_ON_NODE}" \ -::: left_1 "${d_f_5781_r1}" \ -:::+ left_2 "${d_f_5782_r1}" \ -:::+ right_1 "${d_f_5781_r2}" \ -:::+ right_2 "${d_f_5782_r2}" \ -:::+ t_out "${t_out}" -``` - -
-Results of echo test #2 printed to terminal (with added newlines) - -```txt -singularity run \ - --no-home \ - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 \ - --bind /loc/scratch \ - /home/kalavatt/singularity-docker-etc/Trinity.sif \ - Trinity \ - --verbose \ - --max_memory 50G \ - --CPU 6 \ - --SS_lib_type FR \ - --left files_processed-rcor-only/fastq_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz,files_processed-rcor-only/fastq_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz \ - --right files_processed-rcor-only/fastq_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz,files_processed-rcor-only/fastq_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz \ - --jaccard_clip \ - --output files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local \ - --full_cleanup \ - --min_kmer_cov 1 \ - --min_iso_ratio 0.05 \ - --min_glue 2 \ - --glue_factor 0.05 \ - --max_reads_per_graph 2000 \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200 -``` -
-
-
- - -## Build the script for submitting genome-free `Trinity` jobs - -### Run `echo` tests -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -script_name="echo_submit_Trinity_genome-free.sh" -threads=8 - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -left_1="\${1}" -left_2="\${2}" -right_1="\${3}" -right_2="\${4}" -out="\${5}" - -# module load Singularity/3.5.3 - -parallel --header : --colsep " " -k -j 1 echo \\ - 'singularity run \\ - --no-home \\ - --bind {d_exp} \\ - --bind {d_scr} \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory {j_mem} \\ - --CPU {j_cor} \\ - --SS_lib_type FR \\ - --seqType fq \\ - --left {left_1},{left_2} \\ - --right {right_1},{right_2} \\ - --jaccard_clip \\ - --output {t_out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200' \\ -::: d_exp "\$(pwd)" \\ -::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \\ -::: j_mem "50G" \\ -::: j_cor "\${SLURM_CPUS_ON_NODE}" \\ -::: left_1 "\${left_1}" \\ -:::+ left_2 "\${left_2}" \\ -:::+ right_1 "\${right_1}" \\ -:::+ right_2 "\${right_2}" \\ -:::+ t_out "\${out}" -script -# vi "./sh_err_out/${script_name}" # :q - - -# Running the above... ------------------------------------------------------- -# echoTest "${f_in[@]}" -# echoTest "${d_in[@]}" -for i in $(seq 0 $(echo "${#f_in[@]}" - 1 | bc)); do - # i=1 - d_f_5781_r1="${d_in[$i]}/5781_${f_in[$i]}.1.fq.gz" - d_f_5782_r1="${d_in[$i]}/5782_${f_in[$i]}.1.fq.gz" - d_f_5781_r2="${d_in[$i]}/5781_${f_in[$i]}.2.fq.gz" - d_f_5782_r2="${d_in[$i]}/5782_${f_in[$i]}.2.fq.gz" - echo "# =========================================================" - echo "# Establishing infiles... ----------------------------------" - echo " left_1 ${d_f_5781_r1}" - echo " left_2 ${d_f_5782_r1}" - echo " right_1 ${d_f_5781_r2}" - echo " right_2 ${d_f_5782_r2}" - echo "" - - d_base="files_Trinity_genome-free/$(echo "${d_f_5781_r1}" | cut -d "/" -f 1)" # echo "${d_base}" - pre="trinity_5781-5782_$(\ - echo $(basename "${d_f_5781_r1}" ".Aligned.sortedByCoord.out.sc_all.1.fq.gz") \ - | cut -d $'_' -f 2- \ - )" - t_out="${d_base}/${pre}" - echo "# Establishing outfile... ---------------------------------" - echo " d_base ${d_base}" - echo " pre ${pre}" - echo " t_out ${t_out}" - echo "" - - intron="1002" - echo "# Setting intron parameter --------------------------------" - echo " intron ${intron}" - echo "" - - echo "# Comparing in and out... ---------------------------------" - echo " ${f_in[$i]}" - echo " ${t_out}" - - echo "# =========================================================" - echo "" - - [[ -d "${t_out}" ]] || mkdir -p "${t_out}" - echo "" - - #TODO 1/2 Could add some kind of check to make sure that left_* include - #TODO 2/2 read 1, right_* include read 2 - bash "./sh_err_out/${script_name}" \ - "${d_f_5781_r1}" \ - "${d_f_5782_r1}" \ - "${d_f_5781_r2}" \ - "${d_f_5782_r2}" \ - "${t_out}" - - echo "" - echo "" -done -``` - - -### Results of `echo` tests -
-Results of echo tests printed to terminal - -```txt -# ========================================================= -# Establishing infiles... ---------------------------------- - left_1 files_processed-rcor-only/fastq_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - left_2 files_processed-rcor-only/fastq_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - right_1 files_processed-rcor-only/fastq_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - right_2 files_processed-rcor-only/fastq_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - -# Establishing outfile... --------------------------------- - d_base files_Trinity_genome-free/files_processed-rcor-only - pre trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - t_out files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -# Setting intron parameter -------------------------------- - intron 1002 - -# Comparing in and out... --------------------------------- - Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -# ========================================================= - -mkdir: created directory 'files_Trinity_genome-free/files_processed-rcor-only' -mkdir: created directory 'files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd' - -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --seqType fq --left files_processed-rcor-only/fastq_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz,files_processed-rcor-only/fastq_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz --right files_processed-rcor-only/fastq_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz,files_processed-rcor-only/fastq_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz --jaccard_clip --output files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 - - -# ========================================================= -# Establishing infiles... ---------------------------------- - left_1 files_processed-rcor-only/fastq_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz - left_2 files_processed-rcor-only/fastq_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz - right_1 files_processed-rcor-only/fastq_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz - right_2 files_processed-rcor-only/fastq_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz - -# Establishing outfile... --------------------------------- - d_base files_Trinity_genome-free/files_processed-rcor-only - pre trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local - t_out files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local - -# Setting intron parameter -------------------------------- - intron 1002 - -# Comparing in and out... --------------------------------- - Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all - files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local -# ========================================================= - -mkdir: created directory 'files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local' - -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --seqType fq --left files_processed-rcor-only/fastq_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz,files_processed-rcor-only/fastq_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz --right files_processed-rcor-only/fastq_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz,files_processed-rcor-only/fastq_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz --jaccard_clip --output files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 -``` -
-
-
- - -## Submit and run genome-free `Trinity` jobs - -### Generate the submission script -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -script_name="submit_Trinity_genome-free.sh" -threads=6 #ABOVE - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -left_1="\${1}" -left_2="\${2}" -right_1="\${3}" -right_2="\${4}" -out="\${5}" - -module load Singularity/3.5.3 - - -# Echo command invocation to STDOUT ------------------------------------------ -parallel --header : --colsep " " -k -j 1 echo \\ - 'singularity run \\ - --no-home \\ - --bind {d_exp} \\ - --bind {d_scr} \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory {j_mem} \\ - --CPU {j_cor} \\ - --SS_lib_type FR \\ - --seqType fq \\ - --left {left_1},{left_2} \\ - --right {right_1},{right_2} \\ - --jaccard_clip \\ - --output {t_out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200' \\ -::: d_exp "\$(pwd)" \\ -::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \\ -::: j_mem "50G" \\ -::: j_cor "\${SLURM_CPUS_ON_NODE}" \\ -::: left_1 "\${left_1}" \\ -:::+ left_2 "\${left_2}" \\ -:::+ right_1 "\${right_1}" \\ -:::+ right_2 "\${right_2}" \\ -:::+ t_out "\${out}" - - -# Run the command ------------------------------------------------------------ -parallel --header : --colsep " " -k -j 1 \\ - 'singularity run \\ - --no-home \\ - --bind {d_exp} \\ - --bind {d_scr} \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory {j_mem} \\ - --CPU {j_cor} \\ - --SS_lib_type FR \\ - --seqType fq \\ - --left {left_1},{left_2} \\ - --right {right_1},{right_2} \\ - --jaccard_clip \\ - --output {t_out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200' \\ -::: d_exp "\$(pwd)" \\ -::: d_scr "/fh/scratch/delete30/tsukiyama_t:/loc/scratch" \\ -::: j_mem "50G" \\ -::: j_cor "\${SLURM_CPUS_ON_NODE}" \\ -::: left_1 "\${left_1}" \\ -:::+ left_2 "\${left_2}" \\ -:::+ right_1 "\${right_1}" \\ -:::+ right_2 "\${right_2}" \\ -:::+ t_out "\${out}" -script -# vi "./sh_err_out/${script_name}" # :q -``` - - -### Run the submission script -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -for i in $(seq 0 $(echo "${#f_in[@]}" - 1 | bc)); do - # i=1 - d_f_5781_r1="${d_in[$i]}/5781_${f_in[$i]}.1.fq.gz" - d_f_5782_r1="${d_in[$i]}/5782_${f_in[$i]}.1.fq.gz" - d_f_5781_r2="${d_in[$i]}/5781_${f_in[$i]}.2.fq.gz" - d_f_5782_r2="${d_in[$i]}/5782_${f_in[$i]}.2.fq.gz" - echo "# =========================================================" - echo "# Establishing infiles... ----------------------------------" - echo " left_1 ${d_f_5781_r1}" - echo " left_2 ${d_f_5782_r1}" - echo " right_1 ${d_f_5781_r2}" - echo " right_2 ${d_f_5782_r2}" - echo "" - - d_base="files_Trinity_genome-free/$(echo "${d_f_5781_r1}" | cut -d "/" -f 1)" # echo "${d_base}" - pre="trinity_5781-5782_$(\ - echo $(basename "${d_f_5781_r1}" ".Aligned.sortedByCoord.out.sc_all.1.fq.gz") \ - | cut -d $'_' -f 2- \ - )" - t_out="${d_base}/${pre}" - echo "# Establishing outfile... ---------------------------------" - echo " d_base ${d_base}" - echo " pre ${pre}" - echo " t_out ${t_out}" - echo "" - - intron="1002" - echo "# Setting intron parameter --------------------------------" - echo " intron ${intron}" - echo "" - - echo "# Comparing in and out... ---------------------------------" - echo " ${f_in[$i]}" - echo " ${t_out}" - - echo "# =========================================================" - echo "" - - [[ -d "${t_out}" ]] || mkdir -p "${t_out}" - echo "" - - #TODO 1/2 Could add some kind of check to make sure that left_* include - #TODO 2/2 read 1, right_* include read 2 - sbatch "./sh_err_out/${script_name}" \ - "${d_f_5781_r1}" \ - "${d_f_5782_r1}" \ - "${d_f_5781_r2}" \ - "${d_f_5782_r2}" \ - "${t_out}" - sleep 0.33 - - echo "" - echo "" -done -``` - -
-Messages printed to terminal - -``` -# ========================================================= -# Establishing infiles... ---------------------------------- - left_1 files_processed-rcor-only/fastq_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - left_2 files_processed-rcor-only/fastq_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz - right_1 files_processed-rcor-only/fastq_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - right_2 files_processed-rcor-only/fastq_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz - -# Establishing outfile... --------------------------------- - d_base files_Trinity_genome-free/files_processed-rcor-only - pre trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - t_out files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -# Setting intron parameter -------------------------------- - intron 1002 - -# Comparing in and out... --------------------------------- - Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -# ========================================================= - - -Submitted batch job 6705911 - - -# ========================================================= -# Establishing infiles... ---------------------------------- - left_1 files_processed-rcor-only/fastq_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz - left_2 files_processed-rcor-only/fastq_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.1.fq.gz - right_1 files_processed-rcor-only/fastq_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz - right_2 files_processed-rcor-only/fastq_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.2.fq.gz - -# Establishing outfile... --------------------------------- - d_base files_Trinity_genome-free/files_processed-rcor-only - pre trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local - t_out files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local - -# Setting intron parameter -------------------------------- - intron 1002 - -# Comparing in and out... --------------------------------- - Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all - files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local -# ========================================================= - - -Submitted batch job 6705912 -``` -
-
diff --git a/results/2022-1201/work_Trinity_genome-guided.md b/results/2022-1201/work_Trinity_genome-guided.md deleted file mode 100644 index 36b99c5..0000000 --- a/results/2022-1201/work_Trinity_genome-guided.md +++ /dev/null @@ -1,1030 +0,0 @@ - -`#work_Trinity_genome-guided.md` - -
-Table of contents - - -1. [Set things up and run a trial `echo` test to test the setup](#set-things-up-and-run-a-trial-echo-test-to-test-the-setup) -1. [Build the script for submitting genome-guided `Trinity` jobs](#build-the-script-for-submitting-genome-guided-trinity-jobs) - 1. [Run `echo` tests](#run-echo-tests) -1. [Submit and run genome-guided `Trinity` jobs](#submit-and-run-genome-guided-trinity-jobs) -1. [Previous shell script for submitting genome-guided `Trinity` jobs](#previous-shell-script-for-submitting-genome-guided-trinity-jobs) - - -
-
- - - -## Set things up and run a trial `echo` test to test the setup -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 core and defaults - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -Trinity_env - - -# Create an array of files of interest, including relative paths ------------- -unset d_in -typeset -a d_in=( - files_unprocessed/bam_*_merge/Local - files_processed/bam_*_merge/EndToEnd - files_processed-full/bam_*_merge/EndToEnd -) -# echoTest "${d_in[@]}" -# echo "${#d_in[@]}" - -unset infiles -typeset -a infiles -for i in "${d_in[@]}"; do - echo "# Working with files in... --------------------------------" - echo "#+ ${i}" - - while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) - done < <(\ - find "${i}" \ - -type f \ - \( -name "*_Q_IP_*_1_*.bam" -o \ - -name "*_Q_IP_*_10_*.bam" -o \ - -name "*_Q_IP_*_100_*.bam" \) \ - -print0 | - sort -z - ) - - echo "" -done -# echoTest "${infiles[@]}" -# echo "${#infiles[@]}" - - -SLURM_CPUS_ON_NODE=6 # echo "${SLURM_CPUS_ON_NODE}" -f_in="${infiles[5]}" # echo "${f_in}" -intron="1002" # echo "${intron}" -d_base="files_Trinity_genome-guided/$(echo "${f_in}" | cut -d "/" -f 1)" # echo "${d_base}" -pre="trinity_$(basename "${f_in}" ".Aligned.sortedByCoord.out.sc_all.bam")" # echo "${pre}" -t_out="${d_base}/${pre}" # echo "${t_out}" - -echo "${SLURM_CPUS_ON_NODE}" -echo "${f_in}" -echo "${intron}" -echo "${d_base}" -echo "${pre}" -echo "${t_out}" - -parallel --header : --colsep " " -k -j 1 echo \ - 'singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/Trinity.sif \ - Trinity \ - --verbose \ - --max_memory {j_mem} \ - --CPU {j_cor} \ - --SS_lib_type FR \ - --genome_guided_bam {f_in} \ - --genome_guided_max_intron 1002 \ - --jaccard_clip \ - --output {t_out} \ - --full_cleanup \ - --min_kmer_cov 1 \ - --min_iso_ratio 0.05 \ - --min_glue 2 \ - --glue_factor 0.05 \ - --max_reads_per_graph 2000 \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200' \ -::: d_exp "$(pwd)" \ -::: d_scr "/loc/scratch" \ -::: j_mem "50G" \ -::: j_cor "${SLURM_CPUS_ON_NODE}" \ -::: f_in "${f_in}" \ -:::+ t_out "${t_out}" -``` - -
-Results of echo test printed to terminal - -```txt -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --genome_guided_bam files_processed/bam_trim_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam --genome_guided_max_intron 1002 --jaccard_clip --output files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 -``` - -Spot check - -```txt -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /loc/scratch - /home/kalavatt/singularity-docker-etc/Trinity.sif - Trinity - --verbose - --max_memory 50G - --CPU 6 - --SS_lib_type FR - --genome_guided_bam files_processed/bam_trim_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - --genome_guided_max_intron 1002 - --jaccard_clip - --output files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - --full_cleanup - --min_kmer_cov 1 - --min_iso_ratio 0.05 - --min_glue 2 - --glue_factor 0.05 - --max_reads_per_graph 2000 - --normalize_max_read_cov 200 - --group_pairs_distance 700 - --min_contig_length 200 -``` -
-
-
- - -## Build the script for submitting genome-guided `Trinity` jobs - -### Run `echo` tests -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -script_name="echo_submit_Trinity_genome-guided.sh" -threads=6 - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -in="\${1}" -out="\${2}" - -# module load Singularity/3.5.3 - -parallel --header : --colsep " " -k -j 1 echo \\ - 'singularity run \\ - --no-home \\ - --bind {d_exp} \\ - --bind {d_scr} \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory {j_mem} \\ - --CPU {j_cor} \\ - --SS_lib_type FR \\ - --genome_guided_bam {f_in} \\ - --genome_guided_max_intron 1002 \\ - --jaccard_clip \\ - --output {t_out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200' \\ -::: d_exp "\$(pwd)" \\ -::: d_scr "/loc/scratch" \\ -::: j_mem "50G" \\ -::: j_cor "\${SLURM_CPUS_ON_NODE}" \\ -::: f_in "\${in}" \\ -:::+ t_out "\${out}" -script -# vi "./sh_err_out/${script_name}" # :q - - -# Running the above... ------------------------------------------------------- -# echoTest "${infiles[@]}" -for i in "${infiles[@]}"; do - f_in="${i}" # echo "${f_in}" - echo "# =========================================================" - echo "# Establishing infile... ----------------------------------" - echo "- ${f_in}" - echo "" - - d_base="files_Trinity_genome-guided/$(echo "${f_in}" | cut -d "/" -f 1)" # echo "${d_base}" - pre="trinity_$(basename "${f_in}" ".Aligned.sortedByCoord.out.sc_all.bam")" # echo "${prefix}" - t_out="${d_base}/${pre}" # echo "${t_out}" - echo "# Establishing outfile... ---------------------------------" - echo "- ${d_base}" - echo "- ${pre}" - echo "- ${t_out}" - echo "" - - intron="1002" # echo "${intron}" - echo "# Setting intron parameter --------------------------------" - echo "- ${intron}" - echo "" - - echo "# Comparing in and out... ---------------------------------" - echo "- $(basename "${f_in}")" - echo "- $(basename "${t_out}")" - - echo "# =========================================================" - echo "" - - [[ -d "${t_out}" ]] || mkdir -p "${t_out}" - echo "" - - bash "./sh_err_out/${script_name}" \ - "${f_in}" \ - "${t_out}" - - echo "" - echo "" -done -``` - -
-Results of echo tests printed to terminal - -```txt -# ========================================================= -# Establishing infile... ---------------------------------- -- files_unprocessed/bam_split_merge/Local/5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_unprocessed -- trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local -- files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local -# ========================================================= - - -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --genome_guided_bam files_unprocessed/bam_split_merge/Local/5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam --genome_guided_max_intron 1002 --jaccard_clip --output files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_unprocessed/bam_split_merge/Local/5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_unprocessed -- trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -- files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -# ========================================================= - - -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --genome_guided_bam files_unprocessed/bam_split_merge/Local/5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam --genome_guided_max_intron 1002 --jaccard_clip --output files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_unprocessed/bam_split_merge/Local/5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_unprocessed -- trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -- files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -# ========================================================= - - -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --genome_guided_bam files_unprocessed/bam_split_merge/Local/5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam --genome_guided_max_intron 1002 --jaccard_clip --output files_Trinity_genome-guided/files_unprocessed/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed/bam_trim_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed -- trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -- files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -# ========================================================= - - -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --genome_guided_bam files_processed/bam_trim_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam --genome_guided_max_intron 1002 --jaccard_clip --output files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed/bam_trim_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed -- trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -- files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -# ========================================================= - - -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --genome_guided_bam files_processed/bam_trim_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam --genome_guided_max_intron 1002 --jaccard_clip --output files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed/bam_trim_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed -- trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -- files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -# ========================================================= - - -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --genome_guided_bam files_processed/bam_trim_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam --genome_guided_max_intron 1002 --jaccard_clip --output files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-full/bam_trim-rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-full -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -- files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -# ========================================================= - - -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --genome_guided_bam files_processed-full/bam_trim-rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam --genome_guided_max_intron 1002 --jaccard_clip --output files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-full/bam_trim-rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-full -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -- files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -# ========================================================= - - -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --genome_guided_bam files_processed-full/bam_trim-rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam --genome_guided_max_intron 1002 --jaccard_clip --output files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-full/bam_trim-rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-full -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -- files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -# ========================================================= - - -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --genome_guided_bam files_processed-full/bam_trim-rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam --genome_guided_max_intron 1002 --jaccard_clip --output files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 -``` - -Spot-checking a call to singularity... - -```txt -singularity run - --no-home - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - --bind /loc/scratch - /home/kalavatt/singularity-docker-etc/Trinity.sif - Trinity - --verbose - --max_memory 50G - --CPU 6 - --SS_lib_type FR - --genome_guided_bam files_processed/bam_trim_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - --genome_guided_max_intron 1002 - --jaccard_clip - --output files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - --full_cleanup - --min_kmer_cov 1 - --min_iso_ratio 0.05 - --min_glue 2 - --glue_factor 0.05 - --max_reads_per_graph 2000 - --normalize_max_read_cov 200 - --group_pairs_distance 700 - --min_contig_length 200 -``` -
-
-
- - -## Submit and run genome-guided `Trinity` jobs -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -script_name="submit_Trinity_genome-guided.sh" -threads=6 #ABOVE - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -in="\${1}" -out="\${2}" - -module load Singularity/3.5.3 - - -# Echo command invocation to STDOUT ------------------------------------------ -parallel --header : --colsep " " -k -j 1 echo \\ - 'singularity run \\ - --no-home \\ - --bind {d_exp} \\ - --bind {d_scr} \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory {j_mem} \\ - --CPU {j_cor} \\ - --SS_lib_type FR \\ - --genome_guided_bam {f_in} \\ - --genome_guided_max_intron 1002 \\ - --jaccard_clip \\ - --output {t_out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200' \\ -::: d_exp "\$(pwd)" \\ -::: d_scr "/loc/scratch" \\ -::: j_mem "50G" \\ -::: j_cor "\${SLURM_CPUS_ON_NODE}" \\ -::: f_in "\${in}" \\ -:::+ t_out "\${out}" - -echo "" - - -# Run the command ------------------------------------------------------------ -parallel --header : --colsep " " -k -j 1 \\ - 'singularity run \\ - --no-home \\ - --bind {d_exp} \\ - --bind {d_scr} \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory {j_mem} \\ - --CPU {j_cor} \\ - --SS_lib_type FR \\ - --genome_guided_bam {f_in} \\ - --genome_guided_max_intron 1002 \\ - --jaccard_clip \\ - --output {t_out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200' \\ -::: d_exp "\$(pwd)" \\ -::: d_scr "/loc/scratch" \\ -::: j_mem "50G" \\ -::: j_cor "\${SLURM_CPUS_ON_NODE}" \\ -::: f_in "\${in}" \\ -:::+ t_out "\${out}" -script -# vi "./sh_err_out/${script_name}" # :q - -# d_exp "" \\ -# d_scr "" \\ -# j_mem "" \\ -# j_cor "" \\ -# f_in "" \\ -# t_out "" - -# Running the above... ------------------------------------------------------- -# echoTest "${infiles[@]}" -remaining=( - "${infiles[3]}" - "${infiles[4]}" - "${infiles[5]}" - "${infiles[6]}" - "${infiles[7]}" - "${infiles[8]}" -) -echoTest "${remaining[@]}" - -# for i in "${infiles[@]}"; do -# for i in "${infiles[0]}"; do -# for i in "${infiles[1]}"; do -# for i in "${infiles[2]}"; do -# for i in "${remaining[@]}"; do -for i in "${infiles[1]}"; do - f_in="${i}" # echo "${f_in}" - echo "# =========================================================" - echo "# Establishing infile... ----------------------------------" - echo "- ${f_in}" - echo "" - - d_base="files_Trinity_genome-guided/$(echo "${f_in}" | cut -d "/" -f 1)" # echo "${d_base}" - pre="trinity_$(basename "${f_in}" ".Aligned.sortedByCoord.out.sc_all.bam")" # echo "${prefix}" - t_out="${d_base}/${pre}" # echo "${t_out}" - echo "# Establishing outfile... ---------------------------------" - echo "- ${d_base}" - echo "- ${pre}" - echo "- ${t_out}" - echo "" - - intron="1002" # echo "${intron}" - echo "# Setting intron parameter --------------------------------" - echo "- ${intron}" - echo "" - - echo "# Comparing in and out... ---------------------------------" - echo "- $(basename "${f_in}")" - echo "- $(basename "${t_out}")" - - echo "# =========================================================" - echo "" - - [[ -d "${t_out}" ]] || mkdir -p "${t_out}" - echo "" - - sbatch "./sh_err_out/${script_name}" \ - "${f_in}" \ - "${t_out}" - sleep 0.2 - echo "" - - echo "" - echo "" -done -``` - -
-Messages printed to terminal with successful calls of the submission script - -```txt -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed/bam_trim_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed -- trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -- files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -# ========================================================= - - -Submitted batch job 5452110 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed/bam_trim_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed -- trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -- files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -# ========================================================= - - -Submitted batch job 5452111 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed/bam_trim_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed -- trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -- files_Trinity_genome-guided/files_processed/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -# ========================================================= - - -Submitted batch job 5452112 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-full/bam_trim-rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-full -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -- files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -# ========================================================= - - -Submitted batch job 5452113 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-full/bam_trim-rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-full -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -- files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -# ========================================================= - - -Submitted batch job 5452114 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-full/bam_trim-rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-full -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -- files_Trinity_genome-guided/files_processed-full/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -# ========================================================= - - -Submitted batch job 5452115 - - - -``` -
-
-
- - -## Previous shell script for submitting genome-guided `Trinity` jobs -```bash -#!/bin/bash - -# Define variables -d_work="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1101" -d_guided="${d_work}/exp_alignment_STAR_tags/multi-hit-mode/files_bams" -f_guided="${d_guided}/5781_G1_IN_mergedAligned.sortedByCoord.out.exclude-unmapped.SC_all.bam" -prefix_0="Trinity_trial" -prefix_1="genome-guided" -prefix_2="$(echo $(basename "${f_guided}") | cut -d . -f 5)" -prefix="${prefix_0}_${prefix_1}_${prefix_2}" -intron=1002 -script="submit-Trinity-trial-genome-guided.sh" -d_master="${d_work}/exp_${prefix_0}" -d_exp="${d_master}/exp_${prefix}" - -# Change and set up directories -cd "${d_work}" || echo "Error: cd'ing failed; check on this" -[[ -d "${d_exp}" ]] || mkdir -p "${d_exp}" - -# For now, use the latest version of Trinity available via FHCC Bioinformatics -ml Trinity/2.12.0-foss-2020b - -# Generate the job-submission script -if [[ -f "${script}" ]]; then rm "${script}"; fi -cat << script > "${script}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=6 -#SBATCH --error=./%J.err.txt -#SBATCH --output=./%J.out.txt - -infile="\${1}" -intron="\${2}" -outdir="\${3}" -prefix="\${4}" - -echo "echo test:" -echo -e "Trinity \\ \n\ - --max_memory 50G \\ \n\ - --CPU "\${SLURM_CPUS_ON_NODE}" \\ \n\ - --SS_lib_type FR \\ \n\ - --genome_guided_bam "\${infile}" \\ \n\ - --genome_guided_max_intron "\${intron}" \\ \n\ - --jaccard_clip \\ \n\ - --output "\${outdir}/\${prefix}" \\ \n\ - --full_cleanup \\ \n\ - --min_kmer_cov 1 \\ \n\ - --min_iso_ratio 0.05 \\ \n\ - --min_glue 2 \\ \n\ - --glue_factor 0.05 \\ \n\ - --max_reads_per_graph 2000 \\ \n\ - --normalize_max_read_cov 200 \\ \n\ - --group_pairs_distance 700 \\ \n\ - --min_contig_length 200" - -Trinity \\ - --max_memory 50G \\ - --CPU "\${SLURM_CPUS_ON_NODE}" \\ - --SS_lib_type FR \\ - --genome_guided_bam "\${infile}" \\ - --genome_guided_max_intron "\${intron}" \\ - --jaccard_clip \\ - --output "\${outdir}/\${prefix}" \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200 -script -``` -
-
- - -
-Scrap #1 - -```bash -# # Set up a function for doing the above kind of find ------------------------- -# find_merged_bams() { -# find ${1} \ -# -type f \ -# \( -name "*_Q_IP_*_1_*.bam" -o \ -# -name "*_Q_IP_*_10_*.bam" -o \ -# -name "*_Q_IP_*_100_*.bam" \) \ -# -print0 | -# sort -z -# } -# -# -# find_merged_bams "${d_symlinked}/files_unprocessed/bam_"*"_merge/Local" -# find_merged_bams "${d_symlinked}/files_processed/bam_"*"_merge/EndToEnd" -# find_merged_bams "${d_symlinked}/files_processed-full/bam_"*"_merge/EndToEnd" -# #NOTE Can't use this: functions can only return one element -``` -
-
- -
-Scrap #2 - -```bash -parallel --header : --colsep " " -k -j 1 echo \ - 'echo {chicken} \ - ">" ">(tee -a {chicken}.stdout.log)" \ - "2>" ">(tee -a {chicken}.stderr.log >&2)"' \ -::: chicken "monkey" - -parallel --header : --colsep " " -k -j 1 echo \ - 'echo {chicken} \ - > >(tee -a {chicken}.stdout.log) \ - 2> >(tee -a {chicken}.stderr.log >&2)' \ -::: chicken "monkey" -``` -
-
- -
-Scrap #3 - -```bash -# This is how to call with echo and include the writing to STDOUT and STDERR -#+ in the echo'd message -parallel --header : --colsep " " -k -j 1 echo \ - 'singularity shell \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/Trinity.sif \ - Trinity \ - --verbose \ - --max_memory {j_mem} \ - --CPU {j_cor} \ - --SS_lib_type FR \ - --genome_guided_bam {f_in} \ - --genome_guided_max_intron 1002 \ - --jaccard_clip \ - --output {t_out} \ - --full_cleanup \ - --min_kmer_cov 1 \ - --min_iso_ratio 0.05 \ - --min_glue 2 \ - --glue_factor 0.05 \ - --max_reads_per_graph 2000 \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200 \ - ">" ">(tee -a {t_out}/stdout.log)" \ - "2>" ">(tee -a {t_out}/stderr.log >&2)"' \ -::: d_exp "$(pwd)" \ -::: d_scr "/loc/scratch" \ -::: j_mem "50G" \ -::: j_cor "${SLURM_CPUS_ON_NODE}" \ -::: f_in "${f_in}" \ -:::+ t_out "${t_out}" - -# This, I think, is how to call command and have the STDOUT and STDERR written -#+ to the corresponding redirects -parallel --header : --colsep " " -k -j 1 \ - 'singularity shell \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/Trinity.sif \ - Trinity \ - --verbose \ - --max_memory {j_mem} \ - --CPU {j_cor} \ - --SS_lib_type FR \ - --genome_guided_bam {f_in} \ - --genome_guided_max_intron 1002 \ - --jaccard_clip \ - --output {t_out} \ - --full_cleanup \ - --min_kmer_cov 1 \ - --min_iso_ratio 0.05 \ - --min_glue 2 \ - --glue_factor 0.05 \ - --max_reads_per_graph 2000 \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200 \ - > >(tee -a {t_out}/stdout.log) \ - 2> >(tee -a {t_out}/stderr.log >&2)' \ -::: d_exp "$(pwd)" \ -::: d_scr "/loc/scratch" \ -::: j_mem "50G" \ -::: j_cor "${SLURM_CPUS_ON_NODE}" \ -::: f_in "${f_in}" \ -:::+ t_out "${t_out}" -``` -
-
- -
-Scrap #4 - -```bash -# Run the command ------------------------------------------------------------ -singularity run \\ - --no-home \\ - --bind \$(pwd) \\ - --bind /loc/scratch \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory 50G \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - --SS_lib_type FR \\ - --genome_guided_bam \${in} \\ - --genome_guided_max_intron 1002 \\ - --jaccard_clip \\ - --output \${out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200 \\ - > >(tee -a \${out}/stdout.log) \\ - 2> >(tee -a \${out}/stderr.log >&2) -``` -
-
diff --git a/results/2022-1201/work_Trinity_genome-guided_processed-rcor-only.md b/results/2022-1201/work_Trinity_genome-guided_processed-rcor-only.md deleted file mode 100644 index ab1cca9..0000000 --- a/results/2022-1201/work_Trinity_genome-guided_processed-rcor-only.md +++ /dev/null @@ -1,770 +0,0 @@ - -`#work_Trinity_genome-guided_processed-rcor-only.md` - -
-Table of contents - - -1. [Set things up and run a trial `echo` test to test the setup](#set-things-up-and-run-a-trial-echo-test-to-test-the-setup) -1. [Build the script for submitting genome-guided `Trinity` jobs](#build-the-script-for-submitting-genome-guided-trinity-jobs) - 1. [Run `echo` tests](#run-echo-tests) -1. [Submit and run genome-guided `Trinity` jobs](#submit-and-run-genome-guided-trinity-jobs) - - -
-
- - - -## Set things up and run a trial `echo` test to test the setup -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 core, defaults - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -Trinity_env - - -# Create an array of files of interest, including relative paths ------------- -unset d_in -typeset -a d_in=( - files_processed-rcor-only/bam_*_merge/Local - files_processed-rcor-only/bam_*_merge/EndToEnd -) -# echoTest "${d_in[@]}" -# echo "${#d_in[@]}" - -unset infiles -typeset -a infiles -for i in "${d_in[@]}"; do - echo "# Working with files in... --------------------------------" - echo "#+ ${i}" - - # while IFS=" " read -r -d $'\0'; do - # infiles+=( "${REPLY}" ) - # done < <(\ - # find "${i}" \ - # -type f \ - # \( -name "*_Q_IP_*_1_*.bam" -o \ - # -name "*_Q_IP_*_10_*.bam" -o \ - # -name "*_Q_IP_*_100_*.bam" \) \ - # -print0 | - # sort -z - # ) - - # Forgot to do these in addition to the above files - while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) - done < <(\ - find "${i}" \ - -type f \ - \( -name "*_Q_IP_*_5_*.bam" -o \ - -name "*_Q_IP_*_15_*.bam" -o \ - -name "*_Q_IP_*_50_*.bam" \) \ - -print0 | - sort -z - ) - - echo "" -done -# echoTest "${infiles[@]}" -# echo "${#infiles[@]}" - - -SLURM_CPUS_ON_NODE=6 # echo "${SLURM_CPUS_ON_NODE}" -f_in="${infiles[5]}" # echo "${f_in}" -intron="1002" # echo "${intron}" -d_base="files_Trinity_genome-guided/$(echo "${f_in}" | cut -d "/" -f 1)" # echo "${d_base}" -pre="trinity_$(basename "${f_in}" ".Aligned.sortedByCoord.out.sc_all.bam")" # echo "${pre}" -t_out="${d_base}/${pre}" # echo "${t_out}" - -echo "${SLURM_CPUS_ON_NODE}" -echo "${f_in}" -echo "${intron}" -echo "${d_base}" -echo "${pre}" -echo "${t_out}" - -parallel --header : --colsep " " -k -j 1 echo \ - 'singularity run \ - --no-home \ - --bind {d_exp} \ - --bind {d_scr} \ - ~/singularity-docker-etc/Trinity.sif \ - Trinity \ - --verbose \ - --max_memory {j_mem} \ - --CPU {j_cor} \ - --SS_lib_type FR \ - --genome_guided_bam {f_in} \ - --genome_guided_max_intron 1002 \ - --jaccard_clip \ - --output {t_out} \ - --full_cleanup \ - --min_kmer_cov 1 \ - --min_iso_ratio 0.05 \ - --min_glue 2 \ - --glue_factor 0.05 \ - --max_reads_per_graph 2000 \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200' \ -::: d_exp "$(pwd)" \ -::: d_scr "/loc/scratch" \ -::: j_mem "50G" \ -::: j_cor "${SLURM_CPUS_ON_NODE}" \ -::: f_in "${f_in}" \ -:::+ t_out "${t_out}" -``` - -
-Results of echo test printed to terminal (newlines added by me) - -```txt -singularity run \ - --no-home \ - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 \ - --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif \ - Trinity \ - --verbose \ - --max_memory 50G \ - --CPU 6 \ - --SS_lib_type FR \ - --genome_guided_bam files_processed-rcor-only/bam_rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam \ - --genome_guided_max_intron 1002 \ - --jaccard_clip \ - --output files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd \ - --full_cleanup \ - --min_kmer_cov 1 \ - --min_iso_ratio 0.05 \ - --min_glue 2 \ - --glue_factor 0.05 \ - --max_reads_per_graph 2000 \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200 - -singularity run \ - --no-home \ - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 \ - --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif \ - Trinity \ - --verbose \ - --max_memory 50G \ - --CPU 6 \ - --SS_lib_type FR \ - --genome_guided_bam files_processed-rcor-only/bam_rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam \ - --genome_guided_max_intron 1002 \ - --jaccard_clip \ - --output files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd \ - --full_cleanup \ - --min_kmer_cov 1 \ - --min_iso_ratio 0.05 \ - --min_glue 2 \ - --glue_factor 0.05 \ - --max_reads_per_graph 2000 \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200 -``` -
-
- - -## Build the script for submitting genome-guided `Trinity` jobs - -### Run `echo` tests -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -script_name="echo_submit_Trinity_genome-guided.sh" -threads=6 - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -in="\${1}" -out="\${2}" - -# module load Singularity/3.5.3 - -parallel --header : --colsep " " -k -j 1 echo \\ - 'singularity run \\ - --no-home \\ - --bind {d_exp} \\ - --bind {d_scr} \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory {j_mem} \\ - --CPU {j_cor} \\ - --SS_lib_type FR \\ - --genome_guided_bam {f_in} \\ - --genome_guided_max_intron 1002 \\ - --jaccard_clip \\ - --output {t_out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200' \\ -::: d_exp "\$(pwd)" \\ -::: d_scr "/loc/scratch" \\ -::: j_mem "50G" \\ -::: j_cor "\${SLURM_CPUS_ON_NODE}" \\ -::: f_in "\${in}" \\ -:::+ t_out "\${out}" -script -# vi "./sh_err_out/${script_name}" # :q - - -# Running the above... ------------------------------------------------------- -# echoTest "${infiles[@]}" -for i in "${infiles[@]}"; do - f_in="${i}" # echo "${f_in}" - echo "# =========================================================" - echo "# Establishing infile... ----------------------------------" - echo "- ${f_in}" - echo "" - - d_base="files_Trinity_genome-guided/$(echo "${f_in}" | cut -d "/" -f 1)" # echo "${d_base}" - pre="trinity_$(basename "${f_in}" ".Aligned.sortedByCoord.out.sc_all.bam")" # echo "${prefix}" - t_out="${d_base}/${pre}" # echo "${t_out}" - echo "# Establishing outfile... ---------------------------------" - echo "- ${d_base}" - echo "- ${pre}" - echo "- ${t_out}" - echo "" - - intron="1002" # echo "${intron}" - echo "# Setting intron parameter --------------------------------" - echo "- ${intron}" - echo "" - - echo "# Comparing in and out... ---------------------------------" - echo "- $(basename "${f_in}")" - echo "- $(basename "${t_out}")" - - echo "# =========================================================" - echo "" - - [[ -d "${t_out}" ]] || mkdir -p "${t_out}" - echo "" - - bash "./sh_err_out/${script_name}" \ - "${f_in}" \ - "${t_out}" - - echo "" - echo "" -done -``` - -
-Spot checking one of the echo tests - -```txt -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-rcor-only/bam_rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-rcor-only -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd -- files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd -# ========================================================= - -mkdir: created directory 'files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd' - -singularity run --no-home --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif Trinity --verbose --max_memory 50G --CPU 6 --SS_lib_type FR --genome_guided_bam files_processed-rcor-only/bam_rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam --genome_guided_max_intron 1002 --jaccard_clip --output files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd --full_cleanup --min_kmer_cov 1 --min_iso_ratio 0.05 --min_glue 2 --glue_factor 0.05 --max_reads_per_graph 2000 --normalize_max_read_cov 200 --group_pairs_distance 700 --min_contig_length 200 -``` - -With newlines added... - -```txt -singularity run \ - --no-home \ - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 \ - --bind /loc/scratch /home/kalavatt/singularity-docker-etc/Trinity.sif \ - Trinity \ - --verbose \ - --max_memory 50G \ - --CPU 6 \ - --SS_lib_type FR \ - --genome_guided_bam files_processed-rcor-only/bam_rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam \ - --genome_guided_max_intron 1002 \ - --jaccard_clip \ - --output files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd \ - --full_cleanup \ - --min_kmer_cov 1 \ - --min_iso_ratio 0.05 \ - --min_glue 2 \ - --glue_factor 0.05 \ - --max_reads_per_graph 2000 \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200 -``` -
-
-
- - -## Submit and run genome-guided `Trinity` jobs -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -script_name="submit_Trinity_genome-guided.sh" -threads=6 #ABOVE - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -in="\${1}" -out="\${2}" - -module load Singularity/3.5.3 - - -# Echo command invocation to STDOUT ------------------------------------------ -parallel --header : --colsep " " -k -j 1 echo \\ - 'singularity run \\ - --no-home \\ - --bind {d_exp} \\ - --bind {d_scr} \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory {j_mem} \\ - --CPU {j_cor} \\ - --SS_lib_type FR \\ - --genome_guided_bam {f_in} \\ - --genome_guided_max_intron 1002 \\ - --jaccard_clip \\ - --output {t_out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200' \\ -::: d_exp "\$(pwd)" \\ -::: d_scr "/loc/scratch" \\ -::: j_mem "50G" \\ -::: j_cor "\${SLURM_CPUS_ON_NODE}" \\ -::: f_in "\${in}" \\ -:::+ t_out "\${out}" - -echo "" - - -# Run the command ------------------------------------------------------------ -parallel --header : --colsep " " -k -j 1 \\ - 'singularity run \\ - --no-home \\ - --bind {d_exp} \\ - --bind {d_scr} \\ - ~/singularity-docker-etc/Trinity.sif \\ - Trinity \\ - --verbose \\ - --max_memory {j_mem} \\ - --CPU {j_cor} \\ - --SS_lib_type FR \\ - --genome_guided_bam {f_in} \\ - --genome_guided_max_intron 1002 \\ - --jaccard_clip \\ - --output {t_out} \\ - --full_cleanup \\ - --min_kmer_cov 1 \\ - --min_iso_ratio 0.05 \\ - --min_glue 2 \\ - --glue_factor 0.05 \\ - --max_reads_per_graph 2000 \\ - --normalize_max_read_cov 200 \\ - --group_pairs_distance 700 \\ - --min_contig_length 200' \\ -::: d_exp "\$(pwd)" \\ -::: d_scr "/loc/scratch" \\ -::: j_mem "50G" \\ -::: j_cor "\${SLURM_CPUS_ON_NODE}" \\ -::: f_in "\${in}" \\ -:::+ t_out "\${out}" -script -# vi "./sh_err_out/${script_name}" # :q - - -# Running the above... ------------------------------------------------------- -# echoTest "${infiles[@]}" - -for i in "${infiles[@]}"; do - f_in="${i}" # echo "${f_in}" - echo "# =========================================================" - echo "# Establishing infile... ----------------------------------" - echo "- ${f_in}" - echo "" - - d_base="files_Trinity_genome-guided/$(echo "${f_in}" | cut -d "/" -f 1)" # echo "${d_base}" - pre="trinity_$(basename "${f_in}" ".Aligned.sortedByCoord.out.sc_all.bam")" # echo "${prefix}" - t_out="${d_base}/${pre}" # echo "${t_out}" - echo "# Establishing outfile... ---------------------------------" - echo "- ${d_base}" - echo "- ${pre}" - echo "- ${t_out}" - echo "" - - intron="1002" # echo "${intron}" - echo "# Setting intron parameter --------------------------------" - echo "- ${intron}" - echo "" - - echo "# Comparing in and out... ---------------------------------" - echo "- $(basename "${f_in}")" - echo "- $(basename "${t_out}")" - - echo "# =========================================================" - echo "" - - [[ -d "${t_out}" ]] || mkdir -p "${t_out}" - echo "" - - sbatch "./sh_err_out/${script_name}" \ - "${f_in}" \ - "${t_out}" - sleep 0.2 - echo "" - - echo "" - echo "" -done -``` - -
-Messages printed to terminal with successful calls of the submission script - -1, 10, 100 - -```txt -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-rcor-only/bam_rcor-cor_split_merge/Local/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-rcor-only -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_Local -- files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_Local - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_Local -# ========================================================= - - -Submitted batch job 6719414 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-rcor-only/bam_rcor-cor_split_merge/Local/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-rcor-only -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_Local -- files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_Local - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_Local -# ========================================================= - - -Submitted batch job 6719415 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-rcor-only/bam_rcor-cor_split_merge/Local/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-rcor-only -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local -- files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local -# ========================================================= - - -Submitted batch job 6719431 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-rcor-only/bam_rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-rcor-only -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -- files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -# ========================================================= - - -Submitted batch job 6719432 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-rcor-only/bam_rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-rcor-only -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -- files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -# ========================================================= - - -Submitted batch job 6719433 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-rcor-only/bam_rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-rcor-only -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -- files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -# ========================================================= - - -Submitted batch job 6719434 - - - -``` - -5, 15, 50 - -```txt -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-rcor-only/bam_rcor-cor_split_merge/Local/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_Local.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-rcor-only -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_Local -- files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_Local - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_Local.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_Local -# ========================================================= - - -Submitted batch job 6776773 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-rcor-only/bam_rcor-cor_split_merge/Local/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_Local.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-rcor-only -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_Local -- files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_Local - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_Local.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_Local -# ========================================================= - - -Submitted batch job 6776774 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-rcor-only/bam_rcor-cor_split_merge/Local/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_Local.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-rcor-only -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_Local -- files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_Local - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_Local.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_Local -# ========================================================= - - -Submitted batch job 6776775 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-rcor-only/bam_rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-rcor-only -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd -- files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd -# ========================================================= - - -Submitted batch job 6776776 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-rcor-only/bam_rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-rcor-only -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd -- files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd -# ========================================================= - - -Submitted batch job 6776777 - - - -# ========================================================= -# Establishing infile... ---------------------------------- -- files_processed-rcor-only/bam_rcor-cor_split_merge/EndToEnd/5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -# Establishing outfile... --------------------------------- -- files_Trinity_genome-guided/files_processed-rcor-only -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd -- files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd - -# Setting intron parameter -------------------------------- -- 1002 - -# Comparing in and out... --------------------------------- -- 5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd -# ========================================================= - - -Submitted batch job 6776778 - - - -``` -
-
diff --git a/results/2022-1201/work_generate-data_alignment-calls_compare-update.md b/results/2022-1201/work_generate-data_alignment-calls_compare-update.md deleted file mode 100644 index 5481223..0000000 --- a/results/2022-1201/work_generate-data_alignment-calls_compare-update.md +++ /dev/null @@ -1,246 +0,0 @@ - -# `work_preprocess_alignment-calls_compare-update.md` -Comparing, updating STAR alignment calls (2022-1203) -## On `multi-hit` mode -```bash -#!/bin/bash -#DONTRUN - -# Previous call (results/2022-1101/) -STAR \ - --runMode alignReads \ - --runThreadN "${SLURM_CPUS_ON_NODE}" \ - --outSAMtype BAM SortedByCoordinate \ - --outSAMattributes All \ - --genomeDir "${genome_dir}" \ - --readFilesIn "${read_1}" "${read_2}" \ - --outFileNamePrefix "${prefix}" \ - --limitBAMsortRAM 4000000000 \ - --outFilterMultimapNmax 1000 \ - --winAnchorMultimapNmax 1000 \ - --alignSJoverhangMin 8 \ - --alignSJDBoverhangMin 1 \ - --outFilterMismatchNmax 999 \ - --outMultimapperOrder Random \ - --alignEndsType EndToEnd \ - --alignIntronMin 4 \ - --alignIntronMax 5000 \ - --alignMatesGapMax 5000 -# 19 lines - -# Updated call (results/2022-1201/): Addition of --outSAMunmapped to match -#+ rna-star call below; previously, it was not specified and was thus set to -#+ default value of 'None' -STAR \ - --runMode alignReads \ - --runThreadN "${SLURM_CPUS_ON_NODE}" \ - --outSAMtype BAM SortedByCoordinate \ - --outSAMunmapped None \ - --outSAMattributes All \ - --genomeDir "${genome_dir}" \ - --readFilesIn "${read_1}" "${read_2}" \ - --outFileNamePrefix "${prefix}" \ - --limitBAMsortRAM 4000000000 \ - --outFilterMultimapNmax 1000 \ - --winAnchorMultimapNmax 1000 \ - --alignSJoverhangMin 8 \ - --alignSJDBoverhangMin 1 \ - --outFilterMismatchNmax 999 \ - --outMultimapperOrder Random \ - --alignEndsType EndToEnd \ - --alignIntronMin 4 \ - --alignIntronMax 5000 \ - --alignMatesGapMax 5000 -# 20 lines -``` - -- Hold `--winAnchorMultimapNmax 1000` while changing `--outFilterMultimapNmax` - + 1 - * `#QUESTION` Do we just do a separate call for the value of 1? - * `#DECISION` Include it because it is different from `rna-star` mode, which aligns with `--alignEndsType Local` - + 10 `#NOTE` Default value for `--outFilterMultimapNmax` - + 100 - + 1000 -- `#NOTE` Default value for `--winAnchorMultimapNmax`: 50 -- `#QUESTION` What is present in this call that's not present in the `rna-star`-mode call? - + There are 19 lines here versus 15 for `rna-star` mode - + `#ANSWER` - * `--runMode alignReads` - * `--outSAMattributes All` - * `--winAnchorMultimapNmax` - * `--outMultimapperOrder Random` - + Although not explicitly defined in `rna-star` mode... - * the following are still called: - - `--runMode alignReads` - - `--outSAMattributes Standard` - - `--winAnchorMultimapNmax 50` - * `#DONE` Make the above parameters explicit - * `#DONE` Change `--outSAMattributes Standard` to `--outSAMattributes All` - * Final `rna-star` call will have ~~18~~19 lines b/c ~~not~~ adding `--outMultimapperOrder Random` -
-
- -## On `rna-star` mode -```bash -#!/bin/bash -#DONTRUN - -# Previous call (results/2022-1101/) -STAR \ - --runThreadN "${SLURM_CPUS_ON_NODE}" \ - --outSAMtype BAM SortedByCoordinate \ - --outSAMunmapped Within \ - --genomeDir "${genome_dir}" \ - --readFilesIn "${read_1}" "${read_2}" \ - --outFileNamePrefix "${prefix}" \ - --limitBAMsortRAM 4000000000 \ - --outFilterMultimapNmax 1 \ - --alignSJoverhangMin 8 \ - --alignSJDBoverhangMin 1 \ - --outFilterMismatchNmax 999 \ - --alignIntronMin 4 \ - --alignIntronMax 5000 \ - --alignMatesGapMax 5000 - -# STAR \ -# --runThreadN "${SLURM_CPUS_ON_NODE}" \ #SAMEASmulti-hit-mode -# --outSAMtype BAM SortedByCoordinate \ #SAMEASmulti-hit-mode -# --outSAMunmapped Within \ #SAMEASmulti-hit-mode -# --genomeDir "${genome_dir}" \ #SAMEASmulti-hit-mode -# --readFilesIn "${read_1}" "${read_2}" \ #SAMEASmulti-hit-mode -# --outFileNamePrefix "${prefix}" \ #SAMEASmulti-hit-mode -# --limitBAMsortRAM 4000000000 \ #SAMEASmulti-hit-mode -# --outFilterMultimapNmax 1 \ #DIFFERENTmulti-hit-mode -# --alignSJoverhangMin 8 \ #SAMEASmulti-hit-mode -# --alignSJDBoverhangMin 1 \ #SAMEASmulti-hit-mode -# --outFilterMismatchNmax 999 \ #SAMEASmulti-hit-mode -# --alignIntronMin 4 \ #SAMEASmulti-hit-mode -# --alignIntronMax 5000 \ #SAMEASmulti-hit-mode -# --alignMatesGapMax 5000 #SAMEASmulti-hit-mode - -# Updated call (results/2022-1201/) -STAR \ - --runMode alignReads \ - --runThreadN "${SLURM_CPUS_ON_NODE}" \ - --outSAMtype BAM SortedByCoordinate \ - --outSAMunmapped None \ - --outSAMattributes All \ - --genomeDir "${genome_dir}" \ - --readFilesIn "${read_1}" "${read_2}" \ - --outFileNamePrefix "${prefix}" \ - --limitBAMsortRAM 4000000000 \ - --outFilterMultimapNmax 1 \ - --winAnchorMultimapNmax 50 \ - --alignSJoverhangMin 8 \ - --alignSJDBoverhangMin 1 \ - --outFilterMismatchNmax 999 \ - --alignEndsType Local \ - --alignIntronMin 4 \ - --alignIntronMax 5000 \ - --alignMatesGapMax 5000 -# 19 lines -``` - -- `--alignEndsType` is not specified; thus, it's set to its default value of "Local" -- `--winAnchorMultimapNmax` is not specified; thus, it's set to its default value of 50 - -```bash -# How is the updated call different from 'Updated call (results/2022-1201/)'? -# STAR \ -# --runMode alignReads \ #SAMEASmulti-hit-mode -# --runThreadN "${SLURM_CPUS_ON_NODE}" \ #SAMEASmulti-hit-mode -# --outSAMtype BAM SortedByCoordinate \ #SAMEASmulti-hit-mode -# --outSAMunmapped None \ #SAMEASmulti-hit-mode -# --outSAMattributes All \ #SAMEASmulti-hit-mode -# --genomeDir "${genome_dir}" \ #SAMEASmulti-hit-mode -# --readFilesIn "${read_1}" "${read_2}" \ #SAMEASmulti-hit-mode -# --outFileNamePrefix "${prefix}" \ #SAMEASmulti-hit-mode -# --limitBAMsortRAM 4000000000 \ #SAMEASmulti-hit-mode -# --outFilterMultimapNmax 1 \ #SAMEASmulti-hit-mode (in some of the iterations) -# --winAnchorMultimapNmax 50 \ #DIFFERENTmulti-hit-mode (but should be OK to increase to 1000 based on docs) -# --alignSJoverhangMin 8 \ #SAMEASmulti-hit-mode -# --alignSJDBoverhangMin 1 \ #SAMEASmulti-hit-mode -# --outFilterMismatchNmax 999 \ #SAMEASmulti-hit-mode -# --alignEndsType Local \ #DIFFERENTmulti-hit-mode -# --alignIntronMin 4 \ #SAMEASmulti-hit-mode -# --alignIntronMax 5000 \ #SAMEASmulti-hit-mode -# --alignMatesGapMax 5000 #SAMEASmulti-hit-mode -``` - -Ultimately, for `results/2022-1201/` `rna-star` mode, the only difference is the absence of `--outMultimapperOrder Random` and the use of `--alignEndsType Local` - -When `--outFilterMultimapNmax 1`, `--outMultimapperOrder Random` can be used without consequence - -Thus, the only difference between the two is `Local` (which does soft-clipping) and `EndToEnd` alignment -
-
- - -## Smoking out a *bug*: Additional comparisons between `rna-star` and multi-hit modes -Somehow, I am getting the following warnings in the `Log.out` files with today's run: `WARNING: not enough space allocated for transcript. Did not process all windows for read` - -```bash -# Today, 2022-1203, in 'results/2022-1201/' -STAR \ - --runMode alignReads \ - --runThreadN "${SLURM_CPUS_ON_NODE}" \ - --outSAMtype BAM SortedByCoordinate \ - --outSAMunmapped None \ - --outSAMattributes All \ - --genomeDir "${genome_dir}" \ - --readFilesIn "${read_1}" "${read_2}" \ - --outFileNamePrefix "${prefix}" \ - --limitBAMsortRAM 4000000000 \ - --outFilterMultimapNmax 1000 \ - --winAnchorMultimapNmax 1000 \ - --alignSJoverhangMin 8 \ - --alignSJDBoverhangMin 1 \ - --outFilterMismatchNmax 999 \ - --outMultimapperOrder Random \ - --alignEndsType EndToEnd \ - --alignIntronMin 4 \ - --alignIntronMax 5000 \ - --alignMatesGapMax 5000 - -# In 'results/2022-1101/' -STAR \ - --runMode alignReads \ - --runThreadN "${SLURM_CPUS_ON_NODE}" \ - --outSAMtype BAM SortedByCoordinate \ - --outSAMunmapped Within \ - --outSAMattributes All \ - --genomeDir "/home/kalavatt/genomes/combined_SC_KL_20S/STAR" \ - --readFilesIn "${read_1}" "${read_2}" \ - --outFileNamePrefix "${prefix}" \ - --limitBAMsortRAM 4000000000 \ - --outFilterMultimapNmax 1000 \ - --winAnchorMultimapNmax 1000 \ - --alignSJoverhangMin 8 \ - --alignSJDBoverhangMin 1 \ - --outFilterMismatchNmax 999 \ - --outMultimapperOrder Random \ - --alignEndsType EndToEnd \ - --alignIntronMin 4 \ - --alignIntronMax 5000 \ - --alignMatesGapMax 5000 -``` -The two calls are almost exactly the same, yet somehow I am getting the warnings in the `Log.out` files... - -```bash -# 2022-1201: ##### Command Line: -STAR --runMode alignReads --runThreadN 8 --outSAMtype BAM SortedByCoordinate --outSAMunmapped None --outSAMattributes All --genomeDir /home/kalavatt/genomes/combined_SC_KL_20S/STAR --readFilesIn ./files_fastq_symlinks/5781_G1_IN_merged_R1.fastq ./files_fastq_symlinks/5781_G1_IN_merged_R1.fastq --outFileNamePrefix ./files_unprocessed/bam/5781_G1_IN_merged.un_multi-hit-mode_1000/5781_G1_IN_merged.un_multi-hit-mode_1000 --limitBAMsortRAM 4000000000 --outFilterMultimapNmax 1000 --winAnchorMultimapNmax 1000 --alignSJoverhangMin 8 --alignSJDBoverhangMin 1 --outFilterMismatchNmax 999 --outMultimapperOrder Random --alignEndsType EndToEnd --alignIntronMin 4 --alignIntronMax 5000 --alignMatesGapMax 5000 - -# 2022-1101: ##### Command Line: -STAR --runMode alignReads --runThreadN 8 --outSAMtype BAM SortedByCoordinate --outSAMunmapped Within --outSAMattributes All --genomeDir /home/kalavatt/genomes/combined_SC_KL_20S/STAR --readFilesIn ./files_fastq_symlinks/5781_G1_IN_merged_R1.fastq ./files_fastq_symlinks/5781_G1_IN_merged_R2.fastq --outFileNamePrefix ./exp_alignment_STAR_tags/multi-hit-mode/files_bams/5781_G1_IN_merged --limitBAMsortRAM 4000000000 --outFilterMultimapNmax 1000 --winAnchorMultimapNmax 1000 --alignSJoverhangMin 8 --alignSJDBoverhangMin 1 --outFilterMismatchNmax 999 --outMultimapperOrder Random --alignEndsType EndToEnd --alignIntronMin 4 --alignIntronMax 5000 --alignMatesGapMax 5000 - - -# 2022-1201: ##### Final effective command line: -STAR --runMode alignReads --runThreadN 8 --genomeDir /home/kalavatt/genomes/combined_SC_KL_20S/STAR --readFilesIn ./files_fastq_symlinks/5781_G1_IN_merged_R1.fastq ./files_fastq_symlinks/5781_G1_IN_merged_R1.fastq --limitBAMsortRAM 4000000000 --outFileNamePrefix ./files_unprocessed/bam/5781_G1_IN_merged.un_multi-hit-mode_1000/5781_G1_IN_merged.un_multi-hit-mode_1000 --outMultimapperOrder Random --outSAMtype BAM SortedByCoordinate --outSAMattributes All --outSAMunmapped None --outFilterMultimapNmax 1000 --outFilterMismatchNmax 999 --winAnchorMultimapNmax 1000 --alignIntronMin 4 --alignIntronMax 5000 --alignMatesGapMax 5000 --alignSJoverhangMin 8 --alignSJDBoverhangMin 1 --alignEndsType EndToEnd - -# 2022-1101: ##### Final effective command line: -STAR --runMode alignReads --runThreadN 8 --genomeDir /home/kalavatt/genomes/combined_SC_KL_20S/STAR --readFilesIn ./files_fastq_symlinks/5781_G1_IN_merged_R1.fastq ./files_fastq_symlinks/5781_G1_IN_merged_R2.fastq --limitBAMsortRAM 4000000000 --outFileNamePrefix ./exp_alignment_STAR_tags/multi-hit-mode/files_bams/5781_G1_IN_merged --outMultimapperOrder Random --outSAMtype BAM SortedByCoordinate --outSAMattributes All --outSAMunmapped Within --outFilterMultimapNmax 1000 --outFilterMismatchNmax 999 --winAnchorMultimapNmax 1000 --alignIntronMin 4 --alignIntronMax 5000 --alignMatesGapMax 5000 --alignSJoverhangMin 8 --alignSJDBoverhangMin 1 --alignEndsType EndToEnd -``` - -The error is with `--readFilesIn ./files_fastq_symlinks/5781_G1_IN_merged_R1.fastq ./files_fastq_symlinks/5781_G1_IN_merged_R1.fastq`: I was using `*_R1.fastq` for each pair! - -`#DONE` Fix this diff --git a/results/2022-1201/work_generate-data_compress-fastqs_fix-symlinks.md b/results/2022-1201/work_generate-data_compress-fastqs_fix-symlinks.md deleted file mode 100644 index e69de29..0000000 diff --git a/results/2022-1201/work_generate-data_merge-bams.md b/results/2022-1201/work_generate-data_merge-bams.md deleted file mode 100644 index d1e526b..0000000 --- a/results/2022-1201/work_generate-data_merge-bams.md +++ /dev/null @@ -1,1105 +0,0 @@ - -# `work_generate-data_merge-bams.md` - - - -1. [Make and populate directories for merged `.bam`s](#make-and-populate-directories-for-merged-bams) -1. [Get files of interest into an array](#get-files-of-interest-into-an-array) - 1. [Test with files in `files_unprocessed/`](#test-with-files-in-files_unprocessed) - 1. [Test with files in `files_unprocessed/`, `files_processed`, and `files_processed-full`](#test-with-files-in-files_unprocessed-files_processed-and-files_processed-full) -1. [Design `outfile` name, assign `outdir` automatically](#design-outfile-name-assign-outdir-automatically) -1. [Draft a script for repeated running of `samtools merge`](#draft-a-script-for-repeated-running-of-samtools-merge) - 1. [Write a script for `echo` tests](#write-a-script-for-echo-tests) - 1. [Write a script for running the commands](#write-a-script-for-running-the-commands) -1. [Design a loop for on-the-fly assignments before submitting jobs](#design-a-loop-for-on-the-fly-assignments-before-submitting-jobs) - - -
- - -## Make and populate directories for merged `.bam`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mkdir -p files_unprocessed/bam_split_merge/{Local,EndToEnd} -mkdir -p files_processed/bam_trim_split_merge/{Local,EndToEnd} -mkdir -p files_processed-full/bam_trim-rcor-cor_split_merge/{Local,EndToEnd} -``` -
-
- - -## Get files of interest into an array - -### Test with files in `files_unprocessed/` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd ./files_unprocessed || echo "cd'ing failed; check on this" - -unset bams_5781 -typeset -a bams_5781 -while IFS=" " read -r -d $'\0'; do - bams_5781+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name "5781*.Aligned.sortedByCoord.out.sc_all.bam" \ - -print0 \ - | sort -z \ -) -echoTest "${bams_5781[@]}" - -unset bams_5782 -typeset -a bams_5782 -while IFS=" " read -r -d $'\0'; do - bams_5782+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name "5782*.Aligned.sortedByCoord.out.sc_all.bam" \ - -print0 \ - | sort -z \ -) -echoTest "${bams_5782[@]}" - -unset bams_replicates -typeset -A bams_replicates -for i in $(seq 0 31); do - # echo "${i}" - bams_replicates[${bams_5781[i]}]=${bams_5782[i]} -done - -# Check that the keys and values match -for i in "${!bams_replicates[@]}"; do - echo " Key: ${i}" - echo "Value: ${bams_replicates[$i]}" - echo "" -done -``` - -
-Results of loop over associative array - -```txt - Key: ./bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_G1_IP_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_G1_IP_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_G1_IN_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_Q_IP_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_Q_IP_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_Q_IP_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_Q_IP_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_Q_IN_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_Q_IN_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_G1_IN_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_Q_IN_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_Q_IN_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_G1_IP_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_G1_IP_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_G1_IN_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_Q_IP_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_Q_IP_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_G1_IP_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_G1_IP_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_Q_IN_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_Q_IN_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_Q_IN_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_Q_IN_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_G1_IP_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_G1_IP_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_Q_IP_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_Q_IP_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/EndToEnd/5782_G1_IN_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -``` -
-
- - -### Test with files in `files_unprocessed/`, `files_processed`, and `files_processed-full` -```bash -#!/bin/bash -#DONTRUN - -grabnode # 1 - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Get files of interest into an array ---------------------------------------- -unset bams_5781 -typeset -a bams_5781 -while IFS=" " read -r -d $'\0'; do - bams_5781+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name "5781*.Aligned.sortedByCoord.out.sc_all.bam" \ - -print0 \ - | sort -z \ -) -# echoTest "${bams_5781[@]}" -# echo "${#bams_5781[@]}" - -unset bams_5782 -typeset -a bams_5782 -while IFS=" " read -r -d $'\0'; do - bams_5782+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name "5782*.Aligned.sortedByCoord.out.sc_all.bam" \ - -print0 \ - | sort -z \ -) -# echoTest "${bams_5782[@]}" -# echo "${#bams_5782[@]}" - -unset replicates_paired -typeset -A replicates_paired -stop="$(echo "${#bams_5782[@]}" - 1 | bc)" # echo "${stop}" -for i in $(seq 0 "${stop}"); do - # echo "${i}" - replicates_paired[${bams_5781[i]}]=${bams_5782[i]} -done - -# # Check that the keys and values match -# for i in "${!replicates_paired[@]}"; do -# echo " Key: ${i}" -# echo "Value: ${replicates_paired[$i]}" -# echo "" -# done -# echo "${#replicates_paired[@]}" -``` - -
-Results of loop over associative array - -```txt - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_Q_IP_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_Q_IP_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_G1_IP_merged.trim.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_G1_IP_merged.trim.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_Q_IP_merged.trim.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_Q_IP_merged.trim.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_Q_IN_merged.trim.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_Q_IN_merged.trim.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_G1_IP_merged.trim.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_G1_IP_merged.trim.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_Q_IN_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_Q_IN_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_Q_IP_merged.trim.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_Q_IP_merged.trim.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_G1_IN_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_Q_IP_merged.trim.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_Q_IP_merged.trim.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_G1_IP_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_G1_IP_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_G1_IN_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_Q_IP_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_Q_IP_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_Q_IP_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_Q_IP_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_Q_IN_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_Q_IN_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_G1_IN_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_G1_IP_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_G1_IP_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_Q_IP_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_Q_IP_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_Q_IP_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_Q_IP_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_G1_IP_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_G1_IP_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_G1_IP_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_G1_IP_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_G1_IN_merged.trim.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_G1_IN_merged.trim.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_Q_IN_merged.trim.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_Q_IN_merged.trim.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_Q_IN_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_Q_IN_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_G1_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_G1_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_G1_IN_merged.trim.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_G1_IN_merged.trim.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_Q_IN_merged.trim.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_Q_IN_merged.trim.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_G1_IP_merged.trim.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_G1_IP_merged.trim.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_Q_IN_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_Q_IN_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/Local/5781_G1_IN_merged.trim.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/Local/5782_G1_IN_merged.trim.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_G1_IP_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_G1_IP_merged.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/EndToEnd/5782_G1_IN_merged.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -``` -
-
-
- - -## Design `outfile` name, assign `outdir` automatically -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# echo "${bams_5781[1]}" -# echo "${bams_5782[1]}" - -m_d_i="$(dirname "${bams_5781[1]}")" # echo "${m_d_i}" -o1="$(echo "${m_d_i}" | cut -d "/" -f 2)" -o2="$(echo "$(echo "${m_d_i}" | cut -d "/" -f 3)_merge")" -o3="$(echo "${m_d_i}" | cut -d "/" -f 4)" -m_d_o="./${o1}/${o2}/${o3}" # echo "${m_d_o}" - -m_s="$(basename "${bams_5781[1]}" | cut -d "_" -f 2-)" # echo "${m_s}" -m_p="5781-5782" # echo "${m_p}" - -m_f_base="${m_p}_${m_s}" # echo "${m_f}" -m_f="${m_d_o}" # echo "${m_d_o}" # ., "${m_d_o}" -``` -
-
- - -## Draft a script for repeated running of `samtools merge` - -### Write a script for `echo` tests -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -s_name_echo="echo_submit_merge-bams.sh" -threads=8 - -if [[ -f "./sh_err_out/${s_name_echo}" ]]; then - rm "./sh_err_out/${s_name_echo}" -fi -cat << script > "./sh_err_out/${s_name_echo}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name_echo%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name_echo%.sh}.%J.out.txt - -# ${s_name_echo} -# KA -# $(date '+%Y-%m%d') - -rep_1="\${1}" -rep_2="\${2}" -outfile="\${3}" -threads="\${4}" - - -# Run echo tests --------------------- -echo "### Call to samtools merge ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools merge \\ - -@ {threads} \\ - {rep_1} \\ - {rep_2} \\ - -o {outfile}" \\ -::: threads "\${threads}" \\ -::: rep_1 "\${rep_1}" \\ -:::+ rep_2 "\${rep_2}" \\ -:::+ outfile "\${outfile}" -echo "" -echo "" - -echo "### Call to samtools index ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools index \\ - -@ {threads} \\ - {outfile}" \\ -::: threads "\${threads}" \\ -::: outfile "\${outfile}" -echo "" -echo "" - -echo "### Potential call to samtools sort ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools sort \\ - -@ {threads} \\ - {outfile} \\ - -o {outfile_sorted}" \\ -::: threads "\${threads}" \\ -:::+ outfile "\${outfile}" \\ -:::+ outfile_sorted "\${outfile%.bam}.sorted.bam" -echo "" -echo "" - -echo "### Potential call to mv ###" -echo "mv -f \${outfile%.bam}.sorted.bam \${outfile}" -echo "" -echo "" - -echo "### Potential call to index ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools index \\ - -@ {threads} \\ - {outfile}" \\ -::: threads "\${threads}" \\ -::: outfile "\${outfile}" -echo "" -echo "" - - -# # Run commands ----------------------- -# parallel --header : --colsep " " -k -j 1 \\ -# "samtools merge \\ -# -@ {threads} \\ -# {rep_1} \\ -# {rep_2} \\ -# -o {outfile}" \\ -# ::: threads "\${threads}" \\ -# ::: rep_1 "\${rep_1}" \\ -# :::+ rep_2 "\${rep_2}" \\ -# :::+ outfile "\${outfile}" -# -# # utcc.utoronto.ca/~cks/space/blog/programming/BourneIfCanSetVars -# if [[ \$(\\ -# parallel --header : --colsep " " -k -j 1 \\ -# "samtools index \\ -# -@ {threads} \\ -# {outfile}" \\ -# ::: threads "\${threads}" \\ -# ::: outfile "\${outfile}" \\ -# ) -ne 0 ]]; then -# parallel --header : --colsep " " -k -j 1 \\ -# "samtools sort \\ -# -@ {threads} \\ -# {outfile} \\ -# -o {outfile_sorted}" \\ -# ::: threads "\${threads}" \\ -# :::+ outfile "\${outfile}" \\ -# :::+ outfile_sorted "\${outfile%.bam}.sorted.bam" -# -# mv -f \\ -# "\${outfile%.bam}.sorted.bam" \\ -# "\${outfile}" -# -# parallel --header : --colsep " " -k -j 1 \\ -# "samtools index \\ -# -@ {threads} \\ -# {outfile}" \\ -# ::: threads "\${threads}" \\ -# ::: outfile "\${outfile}" -# fi -script -# vi "./sh_err_out/${script_name}" # :q -``` - - -### Write a script for running the commands -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -s_name="submit_merge-bams.sh" -threads=8 - -if [[ -f "./sh_err_out/${s_name}" ]]; then - rm "./sh_err_out/${s_name}" -fi -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -rep_1="\${1}" -rep_2="\${2}" -outfile="\${3}" -threads="\${4}" - - -# Run echo tests --------------------- -echo "### Call to samtools merge ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools merge \\ - -@ {threads} \\ - {rep_1} \\ - {rep_2} \\ - -o {outfile}" \\ -::: threads "\${threads}" \\ -::: rep_1 "\${rep_1}" \\ -:::+ rep_2 "\${rep_2}" \\ -:::+ outfile "\${outfile}" -echo "" -echo "" - -echo "### Call to samtools index ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools index \\ - -@ {threads} \\ - {outfile}" \\ -::: threads "\${threads}" \\ -::: outfile "\${outfile}" -echo "" -echo "" - -echo "### Potential call to samtools sort ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools sort \\ - -@ {threads} \\ - {outfile} \\ - -o {outfile_sorted}" \\ -::: threads "\${threads}" \\ -:::+ outfile "\${outfile}" \\ -:::+ outfile_sorted "\${outfile%.bam}.sorted.bam" -echo "" -echo "" - -echo "### Potential call to mv ###" -echo "mv -f \${outfile%.bam}.sorted.bam \${outfile}" -echo "" -echo "" - -echo "### Potential call to index ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools index \\ - -@ {threads} \\ - {outfile}" \\ -::: threads "\${threads}" \\ -::: outfile "\${outfile}" -echo "" -echo "" - - -# Run commands ----------------------- -parallel --header : --colsep " " -k -j 1 \\ -"samtools merge \\ - -@ {threads} \\ - {rep_1} \\ - {rep_2} \\ - -o {outfile}" \\ -::: threads "\${threads}" \\ -::: rep_1 "\${rep_1}" \\ -:::+ rep_2 "\${rep_2}" \\ -:::+ outfile "\${outfile}" - -# utcc.utoronto.ca/~cks/space/blog/programming/BourneIfCanSetVars -if [[ \$(\\ - parallel --header : --colsep " " -k -j 1 \\ - "samtools index \\ - -@ {threads} \\ - {outfile}" \\ - ::: threads "\${threads}" \\ - ::: outfile "\${outfile}" \\ -) -ne 0 ]]; then - parallel --header : --colsep " " -k -j 1 \\ - "samtools sort \\ - -@ {threads} \\ - {outfile} \\ - -o {outfile_sorted}" \\ - ::: threads "\${threads}" \\ - :::+ outfile "\${outfile}" \\ - :::+ outfile_sorted "\${outfile%.bam}.sorted.bam" - - mv -f \\ - "\${outfile%.bam}.sorted.bam" \\ - "\${outfile}" - - parallel --header : --colsep " " -k -j 1 \\ - "samtools index \\ - -@ {threads} \\ - {outfile}" \\ - ::: threads "\${threads}" \\ - ::: outfile "\${outfile}" -fi -script -# vi "./sh_err_out/${script_name}" # :q -``` -
-
- - -## Design a loop for on-the-fly assignments before submitting jobs -```bash -#!/bin/bash -#DONTRUN - -grabnode # 1 - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Get files of interest into an array ---------------------------------------- -unset bams_5781 -typeset -a bams_5781 -while IFS=" " read -r -d $'\0'; do - bams_5781+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name "5781*.Aligned.sortedByCoord.out.sc_all.bam" \ - -print0 \ - | sort -z \ -) -# echoTest "${bams_5781[@]}" -# echo "${#bams_5781[@]}" - -unset bams_5782 -typeset -a bams_5782 -while IFS=" " read -r -d $'\0'; do - bams_5782+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name "5782*.Aligned.sortedByCoord.out.sc_all.bam" \ - -print0 \ - | sort -z \ -) -# echoTest "${bams_5782[@]}" -# echo "${#bams_5782[@]}" - -unset replicates_paired -typeset -A replicates_paired -stop="$(echo "${#bams_5782[@]}" - 1 | bc)" # echo "${stop}" -for i in $(seq 0 "${stop}"); do - # echo "${i}" - replicates_paired[${bams_5781[i]}]=${bams_5782[i]} -done - - -# Design the reporting/submission loop, then submit jobs --------------------- -s_name_echo="echo_submit_merge-bams.sh" #AGAIN -s_name="submit_merge-bams.sh" #AGAIN -threads=8 #AGAIN - -count=1 -for i in "${!replicates_paired[@]}"; do - # i="${bams_5781[76]}" # echo "${bams_5781[76]}" - - # Assign in- and outdirectories - m_d_i="$(dirname "${i}")" # echo "${m_d_i}" - o1="$(echo "${m_d_i}" | cut -d "/" -f 2)" - o2="$(echo "$(echo "${m_d_i}" | cut -d "/" -f 3)_merge")" - o3="$(echo "${m_d_i}" | cut -d "/" -f 4)" - m_d_o="./${o1}/${o2}/${o3}" # echo "${m_d_o}" # ., "${m_d_o}" - - # Assign outfile - m_s="$(basename "${i}" | cut -d "_" -f 2-)" # echo "${m_s}" - m_p="5781-5782" # echo "${m_p}" - m_f_base="${m_p}_${m_s}" # echo "${m_f}" - m_f="${m_d_o}/${m_f_base}" # echo "${m_d_o}" # ., "${m_d_o}" - - # Report on what script's being submitted with what arguments - message=""" - # -------------------------------------- - Submitting ${s_name} with the following files, parameters: - replicate 1: $(basename ${i}) - replicate 2: $(basename ${replicates_paired[$i]}) - merged outfile: ${m_f_base} - threads: ${threads} - - replicate 1 (full): ${i} - replicate 2 (full): ${replicates_paired[$i]} - merged outfile (full): ${m_f} - - - Call to samtools merge: - samtools merge \\ - -@ \"${threads}\" \\ - \"${i}\" \\ - \"${replicates_paired[$i]}\" \\ - \"${m_f}\" - - Call to samtools index: - samtools index \\ - -@ \"${threads}\" \\ - \"${m_f}\" - - - If merged .bam is not properly sorted, then... - Call to samtools sort: - samtools sort \\ - -@ \"${threads}\" \\ - \"${m_f}\" \\ - \"${m_f%.bam}.sorted.bam\" - - Call to mv: - mv -f \\ - \"${m_f%.bam}.sorted.bam\" \\ - \"${m_f}\" - - Call to samtools index: - samtools index \\ - -@ \"${threads}\" \\ - \"${m_f}\" - - """ - echo -e "${message}" - - # # Echo test - # bash "./sh_err_out/${s_name_echo}" \ - # "${i}" \ - # "${replicates_paired[$i]}" \ - # "${m_f}" \ - # "${threads}" - - sbatch "./sh_err_out/${s_name}" \ - "${i}" \ - "${replicates_paired[$i]}" \ - "${m_f}" \ - "${threads}" - sleep 0.25 - - (( count++ )) -done -``` - -
-Results of echo test with sample index #24 - -Printed to terminal -```txt - # -------------------------------------- - Submitting echo_submit_merge-bams.sh with the following files, parameters: - replicate 1: 5781_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - replicate 2: 5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - merged outfile: 5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - threads: 8 - - replicate 1 (full): ./files_processed/bam_trim_split/Local/5781_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - replicate 2 (full): ./files_processed/bam_trim_split/Local/5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - merged outfile (full): ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - - Call to samtools merge: - samtools merge \ - -@ "8" \ - "./files_processed/bam_trim_split/Local/5781_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam" \ - "./files_processed/bam_trim_split/Local/5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam" \ - "./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam" - - Call to samtools index: - samtools index \ - -@ "8" \ - "./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam" - - - If merged .bam is not properly sorted, then... - Call to samtools sort: - samtools sort \ - -@ "8" \ - "./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam" \ - "./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.sorted.bam" - - Call to mv: - mv -f \ - "./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.sorted.bam" \ - "./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam" - - Call to samtools index: - samtools index \ - -@ "8" \ - "./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam" -``` - -Printed to `STDOUT` -```txt -### Call to samtools merge ### -samtools merge -@ 8 ./files_processed/bam_trim_split/Local/5781_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam ./files_processed/bam_trim_split/Local/5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -o ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - -### Call to samtools index ### -samtools index -@ 8 ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - -### Potential call to samtools sort ### -samtools sort -@ 8 ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -o ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.sorted.bam - - -### Potential call to mv ### -mv -f ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.sorted.bam ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - -### Potential call to index ### -samtools index -@ 8 ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -``` - -Printed to `STDOUT` (cleaned up manually) -```txt -### Call to samtools merge ### -samtools merge \ - -@ 8 \ - ./files_processed/bam_trim_split/Local/5781_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam \ - ./files_processed/bam_trim_split/Local/5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam \ - -o ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - -### Call to samtools index ### -samtools index \ - -@ 8 \ - ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - -### Potential call to samtools sort ### -samtools sort \ - -@ 8 \ - ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam \ - -o ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.sorted.bam - - -### Potential call to mv ### -mv -f \ - ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.sorted.bam \ - ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - -### Potential call to index ### -samtools index \ - -@ 8 \ - ./files_processed/bam_trim_split_merge/Local/5781-5782_Q_IN_merged.trim.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -``` -
-
-
- -
-Scraps - -```bash - -``` -
diff --git a/results/2022-1201/work_generate-data_merge-bams_processed-rcor-only.md b/results/2022-1201/work_generate-data_merge-bams_processed-rcor-only.md deleted file mode 100644 index ee21497..0000000 --- a/results/2022-1201/work_generate-data_merge-bams_processed-rcor-only.md +++ /dev/null @@ -1,870 +0,0 @@ - -# `work_generate-data_merge-bams_processed-rcor-only.md` - - - -1. [Make and populate directories for merged `.bam`s](#make-and-populate-directories-for-merged-bams) -1. [Get files of interest into an array](#get-files-of-interest-into-an-array) - 1. [Test with files in `files_processed-rcor-only/`](#test-with-files-in-files_processed-rcor-only) - 1. [Test with files in `files_processed-rcor-only/`](#test-with-files-in-files_processed-rcor-only-1) -1. [Design `outfile` name, assign `outdir` automatically](#design-outfile-name-assign-outdir-automatically) -1. [Draft a script for repeated running of `samtools merge`](#draft-a-script-for-repeated-running-of-samtools-merge) - 1. [Write a script for `echo` tests](#write-a-script-for-echo-tests) - 1. [Write a script for running the commands](#write-a-script-for-running-the-commands) -1. [Design a loop for on-the-fly assignments before submitting jobs](#design-a-loop-for-on-the-fly-assignments-before-submitting-jobs) - - -
- - -## Make and populate directories for merged `.bam`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -mkdir -p files_processed-rcor-only/bam_rcor-cor_split_merge/{Local,EndToEnd} -``` -
-
- - -## Get files of interest into an array - -### Test with files in `files_processed-rcor-only/` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd ./files_processed-rcor-only || echo "cd'ing failed; check on this" - -unset bams_5781 -typeset -a bams_5781 -while IFS=" " read -r -d $'\0'; do - bams_5781+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name "5781*.Aligned.sortedByCoord.out.sc_all.bam" \ - -print0 \ - | sort -z \ -) -echoTest "${bams_5781[@]}" - -unset bams_5782 -typeset -a bams_5782 -while IFS=" " read -r -d $'\0'; do - bams_5782+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name "5782*.Aligned.sortedByCoord.out.sc_all.bam" \ - -print0 \ - | sort -z \ -) -echoTest "${bams_5782[@]}" - -unset bams_replicates -typeset -A bams_replicates -for i in $(seq 0 31); do - # echo "${i}" - bams_replicates[${bams_5781[i]}]=${bams_5782[i]} -done - -# Check that the keys and values match -for i in "${!bams_replicates[@]}"; do - echo " Key: ${i}" - echo "Value: ${bams_replicates[$i]}" - echo "" -done -``` - -
-Results of loop over associative array - -```txt - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_15_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_15_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -``` -
-
- - -### Test with files in `files_processed-rcor-only/` -```bash -#!/bin/bash -#DONTRUN - -grabnode # 1 - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Get files of interest into an array ---------------------------------------- -unset bams_5781 -typeset -a bams_5781 -while IFS=" " read -r -d $'\0'; do - bams_5781+=( "${REPLY}" ) -done < <(\ - find ./files_processed-rcor-only/ \ - -type f \ - -name "5781*.Aligned.sortedByCoord.out.sc_all.bam" \ - -print0 \ - | sort -z \ -) -# echoTest "${bams_5781[@]}" -# echo "${#bams_5781[@]}" - -unset bams_5782 -typeset -a bams_5782 -while IFS=" " read -r -d $'\0'; do - bams_5782+=( "${REPLY}" ) -done < <(\ - find ./files_processed-rcor-only/ \ - -type f \ - -name "5782*.Aligned.sortedByCoord.out.sc_all.bam" \ - -print0 \ - | sort -z \ -) -# echoTest "${bams_5782[@]}" -# echo "${#bams_5782[@]}" - -unset replicates_paired -typeset -A replicates_paired -stop="$(echo "${#bams_5782[@]}" - 1 | bc)" # echo "${stop}" -for i in $(seq 0 "${stop}"); do - # echo "${i}" - replicates_paired[${bams_5781[i]}]=${bams_5782[i]} -done - -# Check that the keys and values match -for i in "${!replicates_paired[@]}"; do - echo " Key: ${i}" - echo "Value: ${replicates_paired[$i]}" - echo "" -done -echo "${#replicates_paired[@]}" -``` - -
-Results of loop over associative array - -```txt - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IP_merged.trim-rcor.multi-hit-mode_50_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IP_merged.trim-rcor.multi-hit-mode_50_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IN_merged.trim-rcor.multi-hit-mode_50_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IN_merged.trim-rcor.multi-hit-mode_50_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IP_merged.trim-rcor.multi-hit-mode_5_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IP_merged.trim-rcor.multi-hit-mode_5_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_5_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_5_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IP_merged.trim-rcor.multi-hit-mode_15_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IP_merged.trim-rcor.multi-hit-mode_15_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_5_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_15_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_50_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_50_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_50_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IN_merged.trim-rcor.multi-hit-mode_5_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IN_merged.trim-rcor.multi-hit-mode_5_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_15_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_15_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IN_merged.trim-rcor.multi-hit-mode_15_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IN_merged.trim-rcor.multi-hit-mode_15_Local.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - - Key: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -Value: ./files_processed-rcor-only/bam_rcor-cor_split/Local/5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -``` -
-
-
- - -## Design `outfile` name, assign `outdir` automatically -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# echo "${bams_5781[1]}" -# echo "${bams_5782[1]}" - -m_d_i="$(dirname "${bams_5781[1]}")" # echo "${m_d_i}" -o1="$(echo "${m_d_i}" | cut -d "/" -f 2)" -o2="$(echo "$(echo "${m_d_i}" | cut -d "/" -f 3)_merge")" -o3="$(echo "${m_d_i}" | cut -d "/" -f 4)" -m_d_o="./${o1}/${o2}/${o3}" # echo "${m_d_o}" - -m_s="$(basename "${bams_5781[1]}" | cut -d "_" -f 2-)" # echo "${m_s}" -m_p="5781-5782" # echo "${m_p}" - -m_f_base="${m_p}_${m_s}" # echo "${m_f}" -m_f="${m_d_o}" # echo "${m_d_o}" # ., "${m_d_o}" -``` -
-
- - -## Draft a script for repeated running of `samtools merge` - -### Write a script for `echo` tests -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -s_name_echo="echo_submit_merge-bams.sh" -threads=8 - -if [[ -f "./sh_err_out/${s_name_echo}" ]]; then - rm "./sh_err_out/${s_name_echo}" -fi -cat << script > "./sh_err_out/${s_name_echo}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name_echo%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name_echo%.sh}.%J.out.txt - -# ${s_name_echo} -# KA -# $(date '+%Y-%m%d') - -rep_1="\${1}" -rep_2="\${2}" -outfile="\${3}" -threads="\${4}" - - -# Run echo tests --------------------- -echo "### Call to samtools merge ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools merge \\ - -@ {threads} \\ - {rep_1} \\ - {rep_2} \\ - -o {outfile}" \\ -::: threads "\${threads}" \\ -::: rep_1 "\${rep_1}" \\ -:::+ rep_2 "\${rep_2}" \\ -:::+ outfile "\${outfile}" -echo "" -echo "" - -echo "### Call to samtools index ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools index \\ - -@ {threads} \\ - {outfile}" \\ -::: threads "\${threads}" \\ -::: outfile "\${outfile}" -echo "" -echo "" - -echo "### Potential call to samtools sort ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools sort \\ - -@ {threads} \\ - {outfile} \\ - -o {outfile_sorted}" \\ -::: threads "\${threads}" \\ -:::+ outfile "\${outfile}" \\ -:::+ outfile_sorted "\${outfile%.bam}.sorted.bam" -echo "" -echo "" - -echo "### Potential call to mv ###" -echo "mv -f \${outfile%.bam}.sorted.bam \${outfile}" -echo "" -echo "" - -echo "### Potential call to index ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools index \\ - -@ {threads} \\ - {outfile}" \\ -::: threads "\${threads}" \\ -::: outfile "\${outfile}" -echo "" -echo "" - - -# # Run commands ----------------------- -# parallel --header : --colsep " " -k -j 1 \\ -# "samtools merge \\ -# -@ {threads} \\ -# {rep_1} \\ -# {rep_2} \\ -# -o {outfile}" \\ -# ::: threads "\${threads}" \\ -# ::: rep_1 "\${rep_1}" \\ -# :::+ rep_2 "\${rep_2}" \\ -# :::+ outfile "\${outfile}" -# -# # utcc.utoronto.ca/~cks/space/blog/programming/BourneIfCanSetVars -# if [[ \$(\\ -# parallel --header : --colsep " " -k -j 1 \\ -# "samtools index \\ -# -@ {threads} \\ -# {outfile}" \\ -# ::: threads "\${threads}" \\ -# ::: outfile "\${outfile}" \\ -# ) -ne 0 ]]; then -# parallel --header : --colsep " " -k -j 1 \\ -# "samtools sort \\ -# -@ {threads} \\ -# {outfile} \\ -# -o {outfile_sorted}" \\ -# ::: threads "\${threads}" \\ -# :::+ outfile "\${outfile}" \\ -# :::+ outfile_sorted "\${outfile%.bam}.sorted.bam" -# -# mv -f \\ -# "\${outfile%.bam}.sorted.bam" \\ -# "\${outfile}" -# -# parallel --header : --colsep " " -k -j 1 \\ -# "samtools index \\ -# -@ {threads} \\ -# {outfile}" \\ -# ::: threads "\${threads}" \\ -# ::: outfile "\${outfile}" -# fi -script -# vi "./sh_err_out/${script_name}" # :q -``` - - -### Write a script for running the commands -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -s_name="submit_merge-bams.sh" -threads=8 - -if [[ -f "./sh_err_out/${s_name}" ]]; then - rm "./sh_err_out/${s_name}" -fi -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -rep_1="\${1}" -rep_2="\${2}" -outfile="\${3}" -threads="\${4}" - - -# Run echo tests --------------------- -echo "### Call to samtools merge ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools merge \\ - -@ {threads} \\ - {rep_1} \\ - {rep_2} \\ - -o {outfile}" \\ -::: threads "\${threads}" \\ -::: rep_1 "\${rep_1}" \\ -:::+ rep_2 "\${rep_2}" \\ -:::+ outfile "\${outfile}" -echo "" -echo "" - -echo "### Call to samtools index ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools index \\ - -@ {threads} \\ - {outfile}" \\ -::: threads "\${threads}" \\ -::: outfile "\${outfile}" -echo "" -echo "" - -echo "### Potential call to samtools sort ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools sort \\ - -@ {threads} \\ - {outfile} \\ - -o {outfile_sorted}" \\ -::: threads "\${threads}" \\ -:::+ outfile "\${outfile}" \\ -:::+ outfile_sorted "\${outfile%.bam}.sorted.bam" -echo "" -echo "" - -echo "### Potential call to mv ###" -echo "mv -f \${outfile%.bam}.sorted.bam \${outfile}" -echo "" -echo "" - -echo "### Potential call to index ###" -parallel --header : --colsep " " -k -j 1 echo \\ -"samtools index \\ - -@ {threads} \\ - {outfile}" \\ -::: threads "\${threads}" \\ -::: outfile "\${outfile}" -echo "" -echo "" - - -# Run commands ----------------------- -parallel --header : --colsep " " -k -j 1 \\ -"samtools merge \\ - -@ {threads} \\ - {rep_1} \\ - {rep_2} \\ - -o {outfile}" \\ -::: threads "\${threads}" \\ -::: rep_1 "\${rep_1}" \\ -:::+ rep_2 "\${rep_2}" \\ -:::+ outfile "\${outfile}" - -# utcc.utoronto.ca/~cks/space/blog/programming/BourneIfCanSetVars -if [[ \$(\\ - parallel --header : --colsep " " -k -j 1 \\ - "samtools index \\ - -@ {threads} \\ - {outfile}" \\ - ::: threads "\${threads}" \\ - ::: outfile "\${outfile}" \\ -) -ne 0 ]]; then - parallel --header : --colsep " " -k -j 1 \\ - "samtools sort \\ - -@ {threads} \\ - {outfile} \\ - -o {outfile_sorted}" \\ - ::: threads "\${threads}" \\ - :::+ outfile "\${outfile}" \\ - :::+ outfile_sorted "\${outfile%.bam}.sorted.bam" - - mv -f \\ - "\${outfile%.bam}.sorted.bam" \\ - "\${outfile}" - - parallel --header : --colsep " " -k -j 1 \\ - "samtools index \\ - -@ {threads} \\ - {outfile}" \\ - ::: threads "\${threads}" \\ - ::: outfile "\${outfile}" -fi -script -# vi "./sh_err_out/${script_name}" # :q -``` -
-
- - -## Design a loop for on-the-fly assignments before submitting jobs -```bash -#!/bin/bash -#DONTRUN - -grabnode # 1 - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Get files of interest into an array ---------------------------------------- -unset bams_5781 -typeset -a bams_5781 -while IFS=" " read -r -d $'\0'; do - bams_5781+=( "${REPLY}" ) -done < <(\ - find ./files_processed-rcor-only/ \ - -type f \ - -name "5781*.Aligned.sortedByCoord.out.sc_all.bam" \ - -print0 \ - | sort -z \ -) -# echoTest "${bams_5781[@]}" -# echo "${#bams_5781[@]}" - -unset bams_5782 -typeset -a bams_5782 -while IFS=" " read -r -d $'\0'; do - bams_5782+=( "${REPLY}" ) -done < <(\ - find ./files_processed-rcor-only/ \ - -type f \ - -name "5782*.Aligned.sortedByCoord.out.sc_all.bam" \ - -print0 \ - | sort -z \ -) -# echoTest "${bams_5782[@]}" -# echo "${#bams_5782[@]}" - -unset replicates_paired -typeset -A replicates_paired -stop="$(echo "${#bams_5782[@]}" - 1 | bc)" # echo "${stop}" -for i in $(seq 0 "${stop}"); do - # echo "${i}" - replicates_paired[${bams_5781[i]}]=${bams_5782[i]} -done - - -# Design the reporting/submission loop, then submit jobs --------------------- -s_name_echo="echo_submit_merge-bams.sh" #AGAIN -s_name="submit_merge-bams.sh" #AGAIN -threads=8 #AGAIN - -count=1 -for i in "${!replicates_paired[@]}"; do - # i="${bams_5781[76]}" # echo "${bams_5781[76]}" - - # Assign in- and outdirectories - m_d_i="$(dirname "${i}")" # echo "${m_d_i}" - o1="$(echo "${m_d_i}" | cut -d "/" -f 2)" - o2="$(echo "$(echo "${m_d_i}" | cut -d "/" -f 3)_merge")" - o3="$(echo "${m_d_i}" | cut -d "/" -f 4)" - m_d_o="./${o1}/${o2}/${o3}" # echo "${m_d_o}" # ., "${m_d_o}" - - # Assign outfile - m_s="$(basename "${i}" | cut -d "_" -f 2-)" # echo "${m_s}" - m_p="5781-5782" # echo "${m_p}" - m_f_base="${m_p}_${m_s}" # echo "${m_f}" - m_f="${m_d_o}/${m_f_base}" # echo "${m_d_o}" # ., "${m_d_o}" - - # Report on what script's being submitted with what arguments - message=""" - # -------------------------------------- - Submitting ${s_name} with the following files, parameters: - replicate 1: $(basename ${i}) - replicate 2: $(basename ${replicates_paired[$i]}) - merged outfile: ${m_f_base} - threads: ${threads} - - replicate 1 (full): ${i} - replicate 2 (full): ${replicates_paired[$i]} - merged outfile (full): ${m_f} - - - Call to samtools merge: - samtools merge \\ - -@ \"${threads}\" \\ - \"${i}\" \\ - \"${replicates_paired[$i]}\" \\ - \"${m_f}\" - - Call to samtools index: - samtools index \\ - -@ \"${threads}\" \\ - \"${m_f}\" - - - If merged .bam is not properly sorted, then... - Call to samtools sort: - samtools sort \\ - -@ \"${threads}\" \\ - \"${m_f}\" \\ - \"${m_f%.bam}.sorted.bam\" - - Call to mv: - mv -f \\ - \"${m_f%.bam}.sorted.bam\" \\ - \"${m_f}\" - - Call to samtools index: - samtools index \\ - -@ \"${threads}\" \\ - \"${m_f}\" - - """ - echo -e "${message}" - - # # Echo test - # bash "./sh_err_out/${s_name_echo}" \ - # "${i}" \ - # "${replicates_paired[$i]}" \ - # "${m_f}" \ - # "${threads}" - - sbatch "./sh_err_out/${s_name}" \ - "${i}" \ - "${replicates_paired[$i]}" \ - "${m_f}" \ - "${threads}" - sleep 0.25 - - (( count++ )) -done -``` -
diff --git a/results/2022-1201/work_generate-data_preprocessed-full.md b/results/2022-1201/work_generate-data_preprocessed-full.md deleted file mode 100644 index a01eda4..0000000 --- a/results/2022-1201/work_generate-data_preprocessed-full.md +++ /dev/null @@ -1,1249 +0,0 @@ - -# `work_generate-data_preprocessed-full.md` - -
-Table of contents - - -1. [Create data directory](#create-data-directory) -1. [Symlink to `.fastq` files of interest](#symlink-to-fastq-files-of-interest) -1. [Symlink to trimmed `.fastq` files of interest](#symlink-to-trimmed-fastq-files-of-interest) -1. [Remove "erroneous k-mers" from trimmed `.fastq`s with `rcorrector`](#remove-erroneous-k-mers-from-trimmed-fastqs-with-rcorrector) - 1. [Run `rcorrector`](#run-rcorrector) - 1. ["Correct" the `.fastq` outfiles fr/`rcorrector`](#correct-the-fastq-outfiles-frrcorrector) -1. [Generate "processed-full" \(`trim_galore`, `rcorrector`\) `.bam`s](#generate-processed-full-trim_galore-rcorrector-bams) - 1. [Align the adapter-/quality-trimmed, k-mer-corrected `.fastq` files](#align-the-adapter-quality-trimmed-k-mer-corrected-fastq-files) - 1. [Clean up results of `STAR` alignment, index `.bam`s](#clean-up-results-of-star-alignment-index-bams) - 1. [Filter out non-*S. cerevisiae* alignments](#filter-out-non-s-cerevisiae-alignments) - 1. [Index the *S. cerevisiae*-only `.bam`s](#index-the-s-cerevisiae-only-bams) -1. [Convert `*_multi-hit-mode_1_*.bam`s back to `.fastq`s](#convert-_multi-hit-mode_1_bams-back-to-fastqs) - - -
-
- - -## Create data directory -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -mkdir -p files_processed-full/{fastq_trim,fastq_trim-rcor,fastq_trim-rcor-cor,bam_trim-rcor-cor,bam_trim-rcor-cor_split,fastq_trim-rcor-cor_split} -# mkdir: created directory 'files_processed-full' -# mkdir: created directory 'files_processed-full/fastq_trim' -# mkdir: created directory 'files_processed-full/fastq_trim-rcor' -# mkdir: created directory 'files_processed-full/fastq_trim-rcor-cor' -# mkdir: created directory 'files_processed-full/bam_trim-rcor-cor' -# mkdir: created directory 'files_processed-full/bam_trim-rcor-cor_split' -# mkdir: created directory 'files_processed-full/fastq_trim-rcor-cor_split' -``` -
-
- - -## Symlink to `.fastq` files of interest -- `#DONE` See `work_generate-data_unprocessed.md` -- Files are in `${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_fastq_symlinks` -
-
- - -## Symlink to trimmed `.fastq` files of interest -- Code for performing this from scratch in `work_generate-data_processed.md` -- Symlinking to files in `${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/fastq_trim` -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd ./files_processed-full/fastq_trim || - echo "cd'ing failed; check on this" - - -# Get the original trimmed .fastq files of interest into an array ------------ -unset infile_trim -typeset -a infile_trim -while IFS=" " read -r -d $'\0'; do - infile_trim+=( "${REPLY}" ) -done < <(\ - find "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/fastq_trim" \ - -type f \ - -name "*_R?_val_?.fq" \ - -print0 \ - | sort -z \ -) -# echoTest "${infile_trim[@]}" -# echo "${#infile_trim[@]}" - - -# Create symlinks to original trimmed .fastq files in "$(pwd)" --------------- -for i in "${infile_trim[@]}"; do ln -s "${i}" "./$(basename ${i})"; done - -., # Check: Looks OK -``` -
-
- - -## Remove "erroneous k-mers" from trimmed `.fastq`s with `rcorrector` - -### Run `rcorrector` -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# which rcorrector -# # /home/kalavatt/miniconda3/envs/Trinity_env/bin/rcorrector -# -# which parallel -# # /home/kalavatt/miniconda3/envs/Trinity_env/bin/parallel - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Get the symlinked trimmed .fastq file prefixes into an array --------------- -unset infile_trim_prefix -typeset -a infile_trim_prefix -while IFS=" " read -r -d $'\0'; do - infile_trim_prefix+=( "${REPLY%_R?_val_?.fq}" ) -done < <(\ - find "./files_processed-full/" \ - -type l \ - -name "*_R?_val_?.fq" \ - -print0 \ - | sort -z \ -) - -IFS=" " read -r -a infile_trim_prefix \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${infile_trim_prefix[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -# # echoTest "${infile_trim_prefix[@]}" -# ./files_processed-full/fastq_trim/5781_G1_IN_merged -# ./files_processed-full/fastq_trim/5781_G1_IP_merged -# ./files_processed-full/fastq_trim/5781_Q_IN_merged -# ./files_processed-full/fastq_trim/5781_Q_IP_merged -# ./files_processed-full/fastq_trim/5782_G1_IN_merged -# ./files_processed-full/fastq_trim/5782_G1_IP_merged -# ./files_processed-full/fastq_trim/5782_Q_IN_merged -# ./files_processed-full/fastq_trim/5782_Q_IP_merged - -# # echo "${#infile_trim_prefix[@]}" -# 8 - - -# Generate job submission script --------------------------------------------- -script_name="submit_run-rcorrector.sh" -threads=8 - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -read_1="\${1}" -read_2="\${2}" -outdir="\${3}" -threads="\${4}" - -parallel --header : --colsep " " -k -j 1 echo \\ -"run_rcorrector.pl \\ - -t {threads} \\ - -1 {read_1} \\ - -2 {read_2} \\ - -od {outdir}" \\ -::: threads "\${threads}" \\ -::: read_1 "\${read_1}" \\ -::: read_2 "\${read_2}" \\ -::: outdir "\${outdir}" - -parallel --header : --colsep " " -k -j 1 \\ -"run_rcorrector.pl \\ - -t {threads} \\ - -1 {read_1} \\ - -2 {read_2} \\ - -od {outdir}" \\ -::: threads "\${threads}" \\ -::: read_1 "\${read_1}" \\ -::: read_2 "\${read_2}" \\ -::: outdir "\${outdir}" -script -# vi "./sh_err_out/${script_name}" # :q - - -# Run the jobs --------------------------------------------------------------- -# script_name="submit_run-rcorrector.sh" #NOTE Defined above -# threads=8 #NOTE Defined above -storage="./files_processed-full/fastq_trim-rcor" - -count=1 # echo "${count}" -for i in "${infile_trim_prefix[@]}"; do - # i="${infile_trim_prefix[0]}" # echo "${i}" - base=$(basename "${i}") # echo "${base}" - - where="${storage}" # echo "${where}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - - read_1: ${base}_R1_val_1.fq - read_2: ${base}_R2_val_2.unfixrm.cor.fq.gz - storage: ${where} - threads: ${threads} - - read_1 (full): ${i}_R1_val_1.fq - read_2 (full): ${i}_R2_val_2.unfixrm.cor.fq.gz - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}_R1_val_1.fq" \ - # "${i}_R2_val_2.unfixrm.cor.fq.gz" \ - # "${where}" \ - # "${threads}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}_R1_val_1.fq" \ - "${i}_R2_val_2.unfixrm.cor.fq.gz" \ - "${where}" \ - "${threads}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) -done - - -# Compress the rcorrector .fq outfiles --------------------------------------- -exit -grabnode # eight cores, default settings - -Trinity_env - -which pigz -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/pigz - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd -cd ./files_processed-full/fastq_trim-rcor \ - || echo "cd'ing failed; check on this" - -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name "*.fq" \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles[@]}" - -for i in "${infiles[@]}"; do - pigz -p "${SLURM_CPUS_ON_NODE}" "${i}" -done -``` - -
-Results of echo test: - -```txt -run_rcorrector.pl -t 8 -1 ./files_processed-full/fastq_trim/5781_G1_IN_merged_R1_val_1.fq -2 ./files_processed-full/fastq_trim/5781_G1_IN_merged_R2_val_2.unfixrm.cor.fq.gz -od ./files_processed-full/fastq_trim-rcor - - -run_rcorrector.pl -t 8 -1 ./files_processed-full/fastq_trim/5781_G1_IP_merged_R1_val_1.fq -2 ./files_processed-full/fastq_trim/5781_G1_IP_merged_R2_val_2.unfixrm.cor.fq.gz -od ./files_processed-full/fastq_trim-rcor - - -run_rcorrector.pl -t 8 -1 ./files_processed-full/fastq_trim/5781_Q_IN_merged_R1_val_1.fq -2 ./files_processed-full/fastq_trim/5781_Q_IN_merged_R2_val_2.unfixrm.cor.fq.gz -od ./files_processed-full/fastq_trim-rcor - - -run_rcorrector.pl -t 8 -1 ./files_processed-full/fastq_trim/5781_Q_IP_merged_R1_val_1.fq -2 ./files_processed-full/fastq_trim/5781_Q_IP_merged_R2_val_2.unfixrm.cor.fq.gz -od ./files_processed-full/fastq_trim-rcor - - -run_rcorrector.pl -t 8 -1 ./files_processed-full/fastq_trim/5782_G1_IN_merged_R1_val_1.fq -2 ./files_processed-full/fastq_trim/5782_G1_IN_merged_R2_val_2.unfixrm.cor.fq.gz -od ./files_processed-full/fastq_trim-rcor - - -run_rcorrector.pl -t 8 -1 ./files_processed-full/fastq_trim/5782_G1_IP_merged_R1_val_1.fq -2 ./files_processed-full/fastq_trim/5782_G1_IP_merged_R2_val_2.unfixrm.cor.fq.gz -od ./files_processed-full/fastq_trim-rcor - - -run_rcorrector.pl -t 8 -1 ./files_processed-full/fastq_trim/5782_Q_IN_merged_R1_val_1.fq -2 ./files_processed-full/fastq_trim/5782_Q_IN_merged_R2_val_2.unfixrm.cor.fq.gz -od ./files_processed-full/fastq_trim-rcor - - -run_rcorrector.pl -t 8 -1 ./files_processed-full/fastq_trim/5782_Q_IP_merged_R1_val_1.fq -2 ./files_processed-full/fastq_trim/5782_Q_IP_merged_R2_val_2.unfixrm.cor.fq.gz -od ./files_processed-full/fastq_trim-rcor -``` -
-
- - -### "Correct" the `.fastq` outfiles fr/`rcorrector` -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Get .fastq-file prefixes for trimmed, k-mer-corrected files into an array -- -unset infile_trim_rcor_prefix -typeset -a infile_trim_rcor_prefix -while IFS=" " read -r -d $'\0'; do - infile_trim_rcor_prefix+=( "${REPLY%_R?_val_?.cor.fq.gz}" ) -done < <(\ - find ./files_processed-full/fastq_trim-rcor \ - -type f \ - -name *.cor.fq.gz \ - -print0 \ - | sort -z \ -) -# echoTest "${infile_trim_rcor_prefix[@]}" - -IFS=" " read -r -a infile_trim_rcor_prefix \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${infile_trim_rcor_prefix[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -# # echoTest "${infile_trim_rcor_prefix[@]}" -# ./files_processed-full/fastq_trim-rcor/5781_G1_IN_merged -# ./files_processed-full/fastq_trim-rcor/5781_G1_IP_merged -# ./files_processed-full/fastq_trim-rcor/5781_Q_IN_merged -# ./files_processed-full/fastq_trim-rcor/5781_Q_IP_merged -# ./files_processed-full/fastq_trim-rcor/5782_G1_IN_merged -# ./files_processed-full/fastq_trim-rcor/5782_G1_IP_merged -# ./files_processed-full/fastq_trim-rcor/5782_Q_IN_merged -# ./files_processed-full/fastq_trim-rcor/5782_Q_IP_merged - - -# Generate job submission script --------------------------------------------- -# First, check that we have/can access the Python script for correction of -#+ .fq outfiles from rcorrector -if [[ -f "../../bin/filter_rCorrector-treated-fastqs.py" ]]; then - echo TRUE -else - echo FALSE -fi -# TRUE - -# vi "../../bin/filter_rCorrector-treated-fastqs.py" # :q -# python "../../bin/filter_rCorrector-treated-fastqs.py" --help # It works -#TODO Return help and exit if missing argument(s) -#TODO 1/2 Split the work of filter_rCorrector-treated-fastqs.py over multiple -#TODO 2/2 cores if possible - -# Move on to the job-submission script -script_name="submit_run-rcorrector-corrector.sh" -threads=1 - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -python_script="\${1}" -read_1="\${2}" -read_2="\${3}" -instring="\${4}" -outdir="\${5}" - -parallel --header : --colsep " " -k -j 1 echo \\ -"python {python_script} \\ - -1 {read_1} \\ - -2 {read_2} \\ - -s {instring} \\ - -o {outdir} \\ - -g True" \\ -::: python_script \${python_script} \\ -::: read_1 \${read_1} \\ -::: read_2 \${read_2} \\ -::: instring \${instring} \\ -::: outdir \${outdir} - -parallel --header : --colsep " " -k -j 1 \\ -"python {python_script} \\ - -1 {read_1} \\ - -2 {read_2} \\ - -s {instring} \\ - -o {outdir} \\ - -g True" \\ -::: python_script \${python_script} \\ -::: read_1 \${read_1} \\ -::: read_2 \${read_2} \\ -::: instring \${instring} \\ -::: outdir \${outdir} -script -# vi "./sh_err_out/${script_name}" # :q - - -# Run the jobs --------------------------------------------------------------- -# script_name="submit_run-rcorrector.sh" #NOTE Defined above -# threads=8 #NOTE Defined above -storage="./files_processed-full/fastq_trim-rcor-cor" # ., "${storage}" -correction_script="../../bin/filter_rCorrector-treated-fastqs.py" # ., "${correction_script}" - -count=1 # echo "${count}" -for i in "${infile_trim_rcor_prefix[@]}"; do - # i="${infile_trim_rcor_prefix[0]}" # echo "${i}" - base=$(basename "${i}") # echo "${base}" - - where="${storage}" # echo "${where}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - - correction script: $(basename "${correction_script}") - read_1: ${base}_R1_val_1.cor.fq.gz - read_2: ${base}_R2_val_2.cor.fq.gz - sample ID: ${base} - storage: ${where} - threads: ${threads} - - correction script (full): ${correction_script} - read_1 (full): ${i}_R1_val_1.cor.fq.gz - read_2 (full): ${i}_R2_val_2.cor.fq.gz - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${correction_script}" \ - # "${i}_R1_val_1.cor.fq.gz" \ - # "${i}_R2_val_2.cor.fq.gz" \ - # "${base}" \ - # "${where}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${correction_script}" \ - "${i}_R1_val_1.cor.fq.gz" \ - "${i}_R2_val_2.cor.fq.gz" \ - "${base}" \ - "${where}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) -done - -# Move *.counts.txt and *.proportions.txt files from "$(pwd)" to "${storage}" -#+ -#+ This is the result of something that needs to be fixed in the Python script; -#+ details are included in the corresponding #TODO item below -mv *.txt "${storage}" -# renamed '5781_G1_IN_merged.counts.txt' -> './files_processed-full/fastq_trim-rcor-cor/5781_G1_IN_merged.counts.txt' -# renamed '5781_G1_IN_merged.proportions.txt' -> './files_processed-full/fastq_trim-rcor-cor/5781_G1_IN_merged.proportions.txt' -# renamed '5781_G1_IP_merged.counts.txt' -> './files_processed-full/fastq_trim-rcor-cor/5781_G1_IP_merged.counts.txt' -# renamed '5781_G1_IP_merged.proportions.txt' -> './files_processed-full/fastq_trim-rcor-cor/5781_G1_IP_merged.proportions.txt' -# renamed '5781_Q_IN_merged.counts.txt' -> './files_processed-full/fastq_trim-rcor-cor/5781_Q_IN_merged.counts.txt' -# renamed '5781_Q_IN_merged.proportions.txt' -> './files_processed-full/fastq_trim-rcor-cor/5781_Q_IN_merged.proportions.txt' -# renamed '5781_Q_IP_merged.counts.txt' -> './files_processed-full/fastq_trim-rcor-cor/5781_Q_IP_merged.counts.txt' -# renamed '5781_Q_IP_merged.proportions.txt' -> './files_processed-full/fastq_trim-rcor-cor/5781_Q_IP_merged.proportions.txt' -# renamed '5782_G1_IN_merged.counts.txt' -> './files_processed-full/fastq_trim-rcor-cor/5782_G1_IN_merged.counts.txt' -# renamed '5782_G1_IN_merged.proportions.txt' -> './files_processed-full/fastq_trim-rcor-cor/5782_G1_IN_merged.proportions.txt' -# renamed '5782_G1_IP_merged.counts.txt' -> './files_processed-full/fastq_trim-rcor-cor/5782_G1_IP_merged.counts.txt' -# renamed '5782_G1_IP_merged.proportions.txt' -> './files_processed-full/fastq_trim-rcor-cor/5782_G1_IP_merged.proportions.txt' -# renamed '5782_Q_IN_merged.counts.txt' -> './files_processed-full/fastq_trim-rcor-cor/5782_Q_IN_merged.counts.txt' -# renamed '5782_Q_IN_merged.proportions.txt' -> './files_processed-full/fastq_trim-rcor-cor/5782_Q_IN_merged.proportions.txt' -# renamed '5782_Q_IP_merged.counts.txt' -> './files_processed-full/fastq_trim-rcor-cor/5782_Q_IP_merged.counts.txt' -# renamed '5782_Q_IP_merged.proportions.txt' -> './files_processed-full/fastq_trim-rcor-cor/5782_Q_IP_merged.proportions.txt' - - -# Rename the outfiles from "rcorrector correction" --------------------------- -# Remove the new prefix, change the suffix to reflect the recent processing -#TODO 1/2 Change filter_rCorrector-treated-fastqs.py so that no prefix is added -#TODO 2/2 and, instead, the suffix is changed -unset infile_trim_rcor_cor -typeset -a infile_trim_rcor_cor -while IFS=" " read -r -d $'\0'; do - infile_trim_rcor_cor+=( "${REPLY}" ) -done < <(\ - find ./files_processed-full/fastq_trim-rcor-cor \ - -type f \ - -name unfixrm.*.cor.fq.gz \ - -print0 \ - | sort -z \ -) -# # echoTest "${infile_trim_rcor_cor[@]}" -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5781_G1_IN_merged_R1_val_1.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5781_G1_IN_merged_R2_val_2.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5781_G1_IP_merged_R1_val_1.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5781_G1_IP_merged_R2_val_2.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5781_Q_IN_merged_R1_val_1.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5781_Q_IN_merged_R2_val_2.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5781_Q_IP_merged_R1_val_1.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5781_Q_IP_merged_R2_val_2.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5782_G1_IN_merged_R1_val_1.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5782_G1_IN_merged_R2_val_2.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5782_G1_IP_merged_R1_val_1.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5782_G1_IP_merged_R2_val_2.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5782_Q_IN_merged_R1_val_1.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5782_Q_IN_merged_R2_val_2.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5782_Q_IP_merged_R1_val_1.cor.fq.gz -# ./files_processed-full/fastq_trim-rcor-cor/unfixrm.5782_Q_IP_merged_R2_val_2.cor.fq.gz - -which rename -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/rename - -# Test... -for i in "${infile_trim_rcor_cor[@]}"; do - echo "# ----------------------------------------" - rename -n 's/unfixrm.//g' "${i}" - rename -n 's/.cor.fq.gz/.unfixrm.cor.fq.gz/g' "${i}" - echo "" -done - -# Rename things: Part 1 -for i in "${infile_trim_rcor_cor[@]}"; do - rename 's/.cor.fq.gz/.unfixrm.cor.fq.gz/g' "${i}" -done - -# Rename things: Part 2 -for i in "${infile_trim_rcor_cor[@]}"; do - rename 's/unfixrm.57/57/g' "${i%.cor.fq.gz}.unfixrm.cor.fq.gz" -done -``` - -
-Help message for filter_rCorrector-treated-fastqs.py: - -```txt -Options for filtering, logging rCorrector fastq output - -optional arguments: - -h, --help show this help message and exit - -1 READS_LEFT, --reads_left READS_LEFT - R1 fastq infile (gzipped or not), including path - -2 READS_RIGHT, --reads_right READS_RIGHT - R2 fastq infile (gzipped or not), including path - -s SAMPLE_ID, --sample_id SAMPLE_ID - sample name to write to log file - -o DIR_OUT, --dir_out DIR_OUT - outfile directory, including path - -g GZIP_OUT, --gzip_out GZIP_OUT - write gzipped fastq outfiles (True or False) -``` -
-
- -
-Results of echo test: - -```txt -python ../../bin/filter_rCorrector-treated-fastqs.py -1 ./files_processed-full/fastq_trim-rcor/5781_G1_IN_merged_R1_val_1.cor.fq.gz -2 ./files_processed-full/fastq_trim-rcor/5781_G1_IN_merged_R2_val_2.cor.fq.gz -s 5781_G1_IN_merged -o ./files_processed-full/fastq_trim-rcor-cor -g True - - -python ../../bin/filter_rCorrector-treated-fastqs.py -1 ./files_processed-full/fastq_trim-rcor/5781_G1_IP_merged_R1_val_1.cor.fq.gz -2 ./files_processed-full/fastq_trim-rcor/5781_G1_IP_merged_R2_val_2.cor.fq.gz -s 5781_G1_IP_merged -o ./files_processed-full/fastq_trim-rcor-cor -g True - - -python ../../bin/filter_rCorrector-treated-fastqs.py -1 ./files_processed-full/fastq_trim-rcor/5781_Q_IN_merged_R1_val_1.cor.fq.gz -2 ./files_processed-full/fastq_trim-rcor/5781_Q_IN_merged_R2_val_2.cor.fq.gz -s 5781_Q_IN_merged -o ./files_processed-full/fastq_trim-rcor-cor -g True - - -python ../../bin/filter_rCorrector-treated-fastqs.py -1 ./files_processed-full/fastq_trim-rcor/5781_Q_IP_merged_R1_val_1.cor.fq.gz -2 ./files_processed-full/fastq_trim-rcor/5781_Q_IP_merged_R2_val_2.cor.fq.gz -s 5781_Q_IP_merged -o ./files_processed-full/fastq_trim-rcor-cor -g True - - -python ../../bin/filter_rCorrector-treated-fastqs.py -1 ./files_processed-full/fastq_trim-rcor/5782_G1_IN_merged_R1_val_1.cor.fq.gz -2 ./files_processed-full/fastq_trim-rcor/5782_G1_IN_merged_R2_val_2.cor.fq.gz -s 5782_G1_IN_merged -o ./files_processed-full/fastq_trim-rcor-cor -g True - - -python ../../bin/filter_rCorrector-treated-fastqs.py -1 ./files_processed-full/fastq_trim-rcor/5782_G1_IP_merged_R1_val_1.cor.fq.gz -2 ./files_processed-full/fastq_trim-rcor/5782_G1_IP_merged_R2_val_2.cor.fq.gz -s 5782_G1_IP_merged -o ./files_processed-full/fastq_trim-rcor-cor -g True - - -python ../../bin/filter_rCorrector-treated-fastqs.py -1 ./files_processed-full/fastq_trim-rcor/5782_Q_IN_merged_R1_val_1.cor.fq.gz -2 ./files_processed-full/fastq_trim-rcor/5782_Q_IN_merged_R2_val_2.cor.fq.gz -s 5782_Q_IN_merged -o ./files_processed-full/fastq_trim-rcor-cor -g True - - -python ../../bin/filter_rCorrector-treated-fastqs.py -1 ./files_processed-full/fastq_trim-rcor/5782_Q_IP_merged_R1_val_1.cor.fq.gz -2 ./files_processed-full/fastq_trim-rcor/5782_Q_IP_merged_R2_val_2.cor.fq.gz -s 5782_Q_IP_merged -o ./files_processed-full/fastq_trim-rcor-cor -g True -``` -
-
- -`#TODO` It looks as though `*counts.txt` and `*proportions.txt` from running `filter_rCorrector-treated-fastqs.py` are being saved to the current working directory; my incorrect assumption is that they'd be saved to `--dir_out DIR_OUT`; update the help message to note that the outpath must be included with the "sample name" update the Python script so that the `*counts.txt` and `*proportions.txt` outfiles are written to `--dir_out DIR_OUT` (however, this was a source of error earlier (see notebook in `results/2022-1101`), so you'll want to create some small test `.fq.gz` files in order to quickly run the `filter_rCorrector-treated-fastqs.py` over and over again while updating and testing it) - -
- -Look at home directory (results/2022-1201) while awaiting completion of "rcorrector correction" jobs - -```txt -❯ ., -total 918K -drwxrws--- 7 kalavatt 978 Dec 5 09:47 ./ -drwxrws--- 8 kalavatt 218 Dec 5 07:13 ../ --rw-rw---- 1 kalavatt 208 Dec 5 09:47 5781_G1_IN_merged.counts.txt --rw-rw---- 1 kalavatt 292 Dec 5 09:47 5781_G1_IN_merged.proportions.txt --rw-rw---- 1 kalavatt 208 Dec 5 09:45 5781_Q_IN_merged.counts.txt --rw-rw---- 1 kalavatt 290 Dec 5 09:45 5781_Q_IN_merged.proportions.txt --rw-rw---- 1 kalavatt 208 Dec 5 09:46 5782_G1_IN_merged.counts.txt --rw-rw---- 1 kalavatt 292 Dec 5 09:46 5782_G1_IN_merged.proportions.txt --rw-rw---- 1 kalavatt 207 Dec 5 09:39 5782_Q_IN_merged.counts.txt --rw-rw---- 1 kalavatt 292 Dec 5 09:39 5782_Q_IN_merged.proportions.txt -drwxrws--- 2 kalavatt 696 Dec 3 08:57 files_fastq_symlinks/ -drwxrws--- 6 kalavatt 176 Dec 5 08:06 files_processed/ -drwxrws--- 8 kalavatt 273 Dec 5 08:44 files_processed-full/ -drwxrws--- 5 kalavatt 77 Dec 4 18:54 files_unprocessed/ --rw-rw---- 1 kalavatt 4.3K Dec 3 15:56 links_TBD.md --rw-rw---- 1 kalavatt 22 Dec 3 12:26 scratch.sh -drwxrws--- 3 kalavatt 792 Dec 5 09:15 sh_err_out/ --rw-rw---- 1 kalavatt 12K Dec 4 07:29 work_generate-data_alignment-calls_compare-update.md --rw-rw---- 1 kalavatt 0 Dec 5 08:20 work_generate-data_compress-fastqs_fix-symlinks.md --rw-rw---- 1 kalavatt 24K Dec 5 09:48 work_generate-data_preprocessed-full.md --rw-rw---- 1 kalavatt 18K Dec 5 07:26 work_generate-data_preprocessed.md --rw-rw---- 1 kalavatt 26K Dec 5 07:26 work_generate-data_unprocessed.md --rw-rw---- 1 kalavatt 4.0K Dec 2 14:14 work_Trinity-PASA_unprocessed-vs-preprocessed.md - -❯ skal - - JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON) MIN_CPUS - 5291421 campus-ne submit_r kalavatt R 31:37 1 gizmoj6 1 - 5291423 campus-ne submit_r kalavatt R 31:37 1 gizmoj6 1 - 5291417 campus-ne submit_r kalavatt R 31:40 1 gizmok88 1 - 5291419 campus-ne submit_r kalavatt R 31:40 1 gizmok88 1 - 5291034 campus-ne grabnode kalavatt R 1:23:45 1 gizmok14 1 -``` -
-
-
- - -## Generate "processed-full" (`trim_galore`, `rcorrector`) `.bam`s - -### Align the adapter-/quality-trimmed, k-mer-corrected `.fastq` files -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Get .fastq-file prefixes for trimmed files into an array ------------------- -unset infile_trim_rcor_cor -typeset -a infile_trim_rcor_cor -while IFS=" " read -r -d $'\0'; do - infile_trim_rcor_cor+=( "${REPLY%_R?_val_?.unfixrm.cor.fq.gz}" ) -done < <(\ - find ./files_processed-full/fastq_trim-rcor-cor \ - -type f \ - -name *.unfixrm.cor.fq.gz \ - -print0 \ - | sort -z \ -) - -IFS=" " read -r -a infile_trim_rcor_cor \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${infile_trim_rcor_cor[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -# echoTest "${infile_trim_rcor_cor[@]}" -# ./files_processed-full/fastq_trim-rcor-cor/5781_G1_IN_merged -# ./files_processed-full/fastq_trim-rcor-cor/5781_G1_IP_merged -# ./files_processed-full/fastq_trim-rcor-cor/5781_Q_IN_merged -# ./files_processed-full/fastq_trim-rcor-cor/5781_Q_IP_merged -# ./files_processed-full/fastq_trim-rcor-cor/5782_G1_IN_merged -# ./files_processed-full/fastq_trim-rcor-cor/5782_G1_IP_merged -# ./files_processed-full/fastq_trim-rcor-cor/5782_Q_IN_merged -# ./files_processed-full/fastq_trim-rcor-cor/5782_Q_IP_merged - - -# Generate the job submission scripts ---------------------------------------- -#NOTE Can't use previous scripts! They can't handle gzipped files -#DONE Write new scripts with STAR argument --readFilesCommand zcat -for i in 1 10 100 1000; do - for j in Local EndToEnd; do - script_name="submit_align_multi-hit-mode_${i}_${j}.sh" - - if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" - fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -read_1="\${1}" -read_2="\${2}" -prefix="\${3}" -genome_dir="\${4}" - -echo -e "STAR \\ \n\ - --runMode alignReads \\ \n\ - --runThreadN "\${SLURM_CPUS_ON_NODE}" \\ \n\ - --outSAMtype BAM SortedByCoordinate \\ \n\ - --outSAMunmapped None \\ \n\ - --outSAMattributes All \\ \n\ - --genomeDir "\${genome_dir}" \\ \n\ - --readFilesIn "\${read_1}" "\${read_2}" \\ \n\ - --readFilesCommand zcat \\ \n\ - --outFileNamePrefix "\${prefix}" \\ \n\ - --limitBAMsortRAM 4000000000 \\ \n\ - --outFilterMultimapNmax ${i} \\ \n\ - --winAnchorMultimapNmax 1000 \\ \n\ - --alignSJoverhangMin 8 \\ \n\ - --alignSJDBoverhangMin 1 \\ \n\ - --outFilterMismatchNmax 999 \\ \n\ - --outMultimapperOrder Random \\ \n\ - --alignEndsType ${j} \\ \n\ - --alignIntronMin 4 \\ \n\ - --alignIntronMax 5000 \\ \n\ - --alignMatesGapMax 5000" - -STAR \\ - --runMode alignReads \\ - --runThreadN "\${SLURM_CPUS_ON_NODE}" \\ - --outSAMtype BAM SortedByCoordinate \\ - --outSAMunmapped None \\ - --outSAMattributes All \\ - --genomeDir "\${genome_dir}" \\ - --readFilesIn "\${read_1}" "\${read_2}" \\ - --readFilesCommand zcat \\ - --outFileNamePrefix "\${prefix}" \\ - --limitBAMsortRAM 4000000000 \\ - --outFilterMultimapNmax ${i} \\ - --winAnchorMultimapNmax 1000 \\ - --alignSJoverhangMin 8 \\ - --alignSJDBoverhangMin 1 \\ - --outFilterMismatchNmax 999 \\ - --outMultimapperOrder Random \\ - --alignEndsType ${j} \\ - --alignIntronMin 4 \\ - --alignIntronMax 5000 \\ - --alignMatesGapMax 5000 -script - done -done - - -# Run the jobs --------------------------------------------------------------- -genome_dir="${HOME}/genomes/combined_SC_KL_20S/STAR" # ., "${genome_dir}" -threads=8 # echo "${threads}" -storage="./files_processed-full/bam_trim-rcor-cor" # ., "${storage}" - -count=1 -for i in "${infile_trim_rcor_cor[@]}"; do - for j in 1 10 100 1000; do - for k in "Local" "EndToEnd"; do - # j=1 - # k="Local" - script_name="submit_align_multi-hit-mode_${j}_${k}.sh" # echo "${script_name}" - pre="$(basename "${i}").trim-rcor" # echo "${pre}" - suf=$(\ - echo "${script_name}" \ - | awk -F "_" '{ print $3"_"$4"_"$5"_"$6 }' \ - | awk -F "." '{ print $1 }' - ) # echo "${suf}" - where="${storage}/${k}/${pre}.${suf}" # echo "${where}" - where_etc="${where}/${pre}.${suf}" # echo "${where_etc}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - with the following arguments: - read_1: ${i}_R1_val_1.unfixrm.cor.fq.gz - read_2: ${i}_R2_val_2.unfixrm.cor.fq.gz - prefix: ${where_etc} - genome_dir: ${genome_dir} - alignment mode: ${k} - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}_R1_val_1.unfixrm.cor.fq.gz" \ - # "${i}_R2_val_2.unfixrm.cor.fq.gz" \ - # "${where_etc}" \ - # "${genome_dir}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}_R1_val_1.unfixrm.cor.fq.gz" \ - "${i}_R2_val_2.unfixrm.cor.fq.gz" \ - "${where_etc}" \ - "${genome_dir}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) - done - done -done -``` - - -### Clean up results of `STAR` alignment, index `.bam`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # Eight cores, default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Clean up results of STAR alignment ----------------------------------------- -# stackoverflow.com/questions/16541582/find-multiple-files-and-rename-them-in-linux -find ./files_processed-full/bam_trim-rcor-cor \ - -iname "*Aligned.sortedByCoord.out.bam" \ - -exec rename 's/Aligned./.Aligned./g' '{}' \; - -find ./files_processed-full/bam_trim-rcor-cor \ - -iname "*Log.*" \ - -exec rename 's/Log./.Log./g' '{}' \; - -find ./files_processed-full/bam_trim-rcor-cor \ - -iname "*SJ.*" \ - -exec rename 's/SJ./.SJ./g' '{}' \; - -# stackoverflow.com/questions/2810838/finding-empty-directories -cd ./files_processed-full/bam_trim-rcor-cor -find . -depth -type d -empty -delete - -# Get back to the main working directory -mwd - - -# Create an array for .bam files of interest --------------------------------- -unset infiles_mapped -while IFS=" " read -r -d $'\0'; do - infiles_mapped+=( "${REPLY}" ) -done < <(\ - find ./files_processed-full/bam_trim-rcor-cor \ - -type f \ - -name *.trim-rcor.*.Aligned.sortedByCoord.out.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_mapped[@]}" -# echo "${#infiles_mapped[@]}" - - -# Run samtools index on each element of .bam array --------------------------- -for i in "${infiles_mapped[@]}"; do - # echo "samtools index -@ 8 \"${i}\"" - samtools index -@ 8 "${i}" -done -``` -
-
- - -### Filter out non-*S. cerevisiae* alignments -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Create an array for .bam files of interest --------------------------------- -unset infiles_mapped -while IFS=" " read -r -d $'\0'; do - infiles_mapped+=( "${REPLY}" ) -done < <(\ - find ./files_processed-full/bam_trim-rcor-cor \ - -type f \ - -name *.trim-rcor.*.Aligned.sortedByCoord.out.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_mapped[@]}" -# echo "${#infiles_mapped[@]}" - - -# Generate job submission script --------------------------------------------- -# NOTE 1/2 Necessary script, "submit_split-bam.sh", was generated in -#+ NOTE 2/2 work_generate-data_unprocessed.md - - -# Run the jobs --------------------------------------------------------------- -script_name="submit_split-bam.sh" # ., "./sh_err_out/${script_name}" -threads=4 -storage="./files_processed-full/bam_trim-rcor-cor_split" # ., "${storage}" -chromosomes="I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" -split="sc_all" - -count=1 # echo "${count}" -for i in "${infiles_mapped[@]}"; do - # i="${infiles_mapped[0]}" # ., "${i}" - base=$(basename "${i}" .bam) # echo "${base}" - - if [[ "${base}" == *"_EndToEnd"* ]]; then - k="EndToEnd" - elif [[ "${base}" == *"_Local"* ]]; then - k="Local" - else - help=""" - Exiting: An error was encountered when determining STAR alignment mode; - check on this - """ - echo "${help}" - # exit 1 - fi - # echo "${k}" - - outfile="${base}.${split}.bam" # echo "${outfile}" - - where="${storage}/${k}" # echo "${where}" - where_etc="${where}/${outfile}" # echo "${where_etc}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - - bam infile: ${base}.bam - bam outfile: ${outfile} - chromosomes: ${chromosomes} - storage: ${where} - threads: ${threads} - - bam infile (full): ${i} - bam outfile (full): ${where_etc} - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - # mkdir: created directory './files_unprocessed/bam_split' - # mkdir: created directory './files_unprocessed/bam_split/EndToEnd' - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}" \ - # "${where_etc}" \ - # "${chromosomes}" \ - # "${threads}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}" \ - "${where_etc}" \ - "${chromosomes}" \ - "${threads}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) -done -``` - - -### Index the *S. cerevisiae*-only `.bam`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # Eight cores, default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Create an array for .bam files of interest --------------------------------- -unset infiles_mapped_sc -while IFS=" " read -r -d $'\0'; do - infiles_mapped_sc+=( "${REPLY}" ) -done < <(\ - find ./files_processed-full/bam_trim-rcor-cor_split \ - -type f \ - -name *.sc_all.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_mapped_sc[@]}" -# echo "${#infiles_mapped_sc[@]}" - - -# Run samtools index on each element of .bam array --------------------------- -for i in "${infiles_mapped_sc[@]}"; do - # echo "samtools index -@ 8 \"${i}\"" - samtools index -@ 8 "${i}" -done -``` -
-Note on files that took a long time to filter to include only S. cerevisiae chromosomes - -```txt -Interestingly, it took a very long time for the following to complete: -- 5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -- 5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -These also took a long time to complete: -- 5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -- 5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -``` -
-
-
- - -## Convert `*_multi-hit-mode_1_*.bam`s back to `.fastq`s -Convert the the adapter-/quality-trimmed, k-mer-correct, non-multi-hit-mode (i.e., those with the substring "`_multi-hit-mode_1_`"), *S. cerevisiae*-filtered `.bam`s to .`fastq`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Create an array for .bam files of interest --------------------------------- -unset infiles_multi_1_sc -while IFS=" " read -r -d $'\0'; do - infiles_multi_1_sc+=( "${REPLY}" ) -done < <(\ - find ./files_processed-full/bam_trim-rcor-cor_split \ - -type f \ - -name *.trim-rcor.multi-hit-mode_1_*.sc_all.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_multi_1_sc[@]}" -# echo "${#infiles_multi_1_sc[@]}" - - -# Generate job submission script --------------------------------------------- -# NOTE 1/2 Necessary script, "submit_convert-bam-fastq.sh", was generated in -#+ NOTE 2/2 work_generate-data_unprocessed.md - - -# Run the jobs --------------------------------------------------------------- -script_name="submit_convert-bam-fastq.sh" -threads=4 -storage="./files_processed-full/fastq_trim-rcor-cor_split" # ., "${storage}" - -count=1 # echo "${count}" -for i in "${infiles_multi_1_sc[@]}"; do - # i="${infiles_multi_1_sc[0]}" # echo "${i}" - base=$(basename "${i}" .bam) # echo "${base}" - - if [[ "${base}" == *"_EndToEnd"* ]]; then - k="EndToEnd" - elif [[ "${base}" == *"_Local"* ]]; then - k="Local" - else - help=""" - Exiting: An error was encountered when determining STAR alignment mode; - check on this - """ - echo "${help}" - # exit 1 - fi - # echo "${k}" - - where="${storage}/${k}" # echo "${where}" - where_etc="${where}/${base}" # echo "${where_etc}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - - bam infile: ${base}.bam - fastq outfile #1: ${base}.1.fq.gz - fastq outfile #2: ${base}.2.fq.gz - storage: ${where} - threads: ${threads} - - bam infile (full): ${i} - fastq outfile #1 (full): ${where_etc}.1.fq.gz - fastq outfile #2 (full): ${where_etc}.2.fq.gz - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - # mkdir: created directory './files_unprocessed/fastq_split' - # mkdir: created directory './files_unprocessed/fastq_split/EndToEnd' - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}" \ - # "${where_etc}" \ - # "${threads}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}" \ - "${where_etc}" \ - "${threads}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) -done -``` -
-
- -
-Code snippets for checking on jobs - -```bash -list_running_IDs() { - squeue -h -u "$(whoami)" \ - | tr -s ' ' \ - | sed 's/^ //g' \ - | tr ' ' '\t' \ - | cut -f 1,5 \ - | awk -F '\t' '{ $2 = R; print }' -} - - -alias count_running="list_running_IDs | wc -l" -``` -
-
diff --git a/results/2022-1201/work_generate-data_preprocessed-rcor-only.md b/results/2022-1201/work_generate-data_preprocessed-rcor-only.md deleted file mode 100644 index 68ef575..0000000 --- a/results/2022-1201/work_generate-data_preprocessed-rcor-only.md +++ /dev/null @@ -1,986 +0,0 @@ - -# `work_generate-data_preprocessed-rcor-only.md` - -
-Table of contents - - -1. [Create data directory](#create-data-directory) -1. [Symlink to `.fastq` files of interest](#symlink-to-fastq-files-of-interest) -1. [Remove "erroneous k-mers" from `.fastq`s with `rcorrector`](#remove-erroneous-k-mers-from-fastqs-with-rcorrector) - 1. [Run `rcorrector`](#run-rcorrector) - 1. ["Correct" the `.fastq` outfiles fr/`rcorrector`](#correct-the-fastq-outfiles-frrcorrector) -1. [Generate "processed-rcor-only" \(`rcorrector`\) `.bam`s](#generate-processed-rcor-only-rcorrector-bams) - 1. [Align the k-mer-corrected `.fastq` files](#align-the-k-mer-corrected-fastq-files) - 1. [Clean up results of `STAR` alignment, index `.bam`s](#clean-up-results-of-star-alignment-index-bams) - 1. [Filter out non-*S. cerevisiae* alignments](#filter-out-non-s-cerevisiae-alignments) - 1. [Index the *S. cerevisiae*-only `.bam`s](#index-the-s-cerevisiae-only-bams) -1. [Convert `*_multi-hit-mode_1_*.bam`s back to `.fastq`s](#convert-_multi-hit-mode_1_bams-back-to-fastqs) - - -
-
- - -## Create data directory -```bash -#!/bin/bash -#DONTRUN - -grabnode # 1 core, default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -d_exp="files_processed-rcor-only" -mkdir -p ${d_exp}/{fastq_rcor,fastq_rcor-cor,bam_rcor-cor,bam_rcor-cor_split,fastq_rcor-cor_split} -# mkdir: created directory 'files_processed-rcor-only' -# mkdir: created directory 'files_processed-rcor-only/fastq_rcor' -# mkdir: created directory 'files_processed-rcor-only/fastq_rcor-cor' -# mkdir: created directory 'files_processed-rcor-only/bam_rcor-cor' -# mkdir: created directory 'files_processed-rcor-only/bam_rcor-cor_split' -# mkdir: created directory 'files_processed-rcor-only/fastq_rcor-cor_split' -``` -
-
- - -## Symlink to `.fastq` files of interest -- `#DONE` See `work_generate-data_unprocessed.md` -- Files are in `${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_fastq_symlinks` -
-
- - -## Remove "erroneous k-mers" from `.fastq`s with `rcorrector` - -### Run `rcorrector` -```bash -#!/bin/bash -#DONTRUN - -grabnode # 1 core,default settings - -Trinity_env - -# which rcorrector -# # /home/kalavatt/miniconda3/envs/Trinity_env/bin/rcorrector -# -# which parallel -# # /home/kalavatt/miniconda3/envs/Trinity_env/bin/parallel - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Get the symlinked .fastq file prefixes into an array ----------------------- -unset infile_prefix -typeset -a infile_prefix -while IFS=" " read -r -d $'\0'; do - infile_prefix+=( "${REPLY%_R?.fastq}" ) -done < <(\ - find "./files_fastq_symlinks" \ - -type l \ - -name "*_R?.fastq" \ - -print0 \ - | sort -z \ -) - -IFS=" " read -r -a infile_prefix \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${infile_prefix[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -# echoTest "${infile_prefix[@]}" -# echo "${#infile_prefix[@]}" - - -# # Generate job submission script --------------------------------------------- -script_name="submit_run-rcorrector.sh" -threads=8 - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -read_1="\${1}" -read_2="\${2}" -outdir="\${3}" -threads="\${4}" - -parallel --header : --colsep " " -k -j 1 echo \\ -"run_rcorrector.pl \\ - -t {threads} \\ - -1 {read_1} \\ - -2 {read_2} \\ - -od {outdir}" \\ -::: threads "\${threads}" \\ -::: read_1 "\${read_1}" \\ -::: read_2 "\${read_2}" \\ -::: outdir "\${outdir}" - -parallel --header : --colsep " " -k -j 1 \\ -"run_rcorrector.pl \\ - -t {threads} \\ - -1 {read_1} \\ - -2 {read_2} \\ - -od {outdir}" \\ -::: threads "\${threads}" \\ -::: read_1 "\${read_1}" \\ -::: read_2 "\${read_2}" \\ -::: outdir "\${outdir}" -script -# vi "./sh_err_out/${script_name}" # :q - - -# Run the jobs --------------------------------------------------------------- -script_name="submit_run-rcorrector.sh" -threads=8 -storage="./${d_exp}/fastq_rcor" - -count=1 # echo "${count}" -for i in "${infile_prefix[@]}"; do - # i="${infile_prefix[0]}" # echo "${i}" - base=$(basename "${i}") # echo "${base}" - - where="${storage}" # echo "${where}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - - read_1: ${base}_R1.fastq - read_2: ${base}_R2.fastq - storage: ${where} - threads: ${threads} - - read_1 (full): ${i}_R1.fastq - read_2 (full): ${i}_R2.fastq - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}_R1.fastq" \ - "${i}_R2.fastq" \ - "${where}" \ - "${threads}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) -done - - -# Compress the rcorrector .fq outfiles --------------------------------------- -exit # Leave the node with 1 core, get a node with 8 cores -grabnode # 8 cores, default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd -cd ./${d_exp}/fastq_rcor \ - || echo "cd'ing failed; check on this" - -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name "*.fq" \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles[@]}" - -for i in "${infiles[@]}"; do - pigz -p "${SLURM_CPUS_ON_NODE}" "${i}" -done -``` - - -### "Correct" the `.fastq` outfiles fr/`rcorrector` -```bash -#!/bin/bash -#DONTRUN - -grabnode # 1 core, default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Get .fastq prefixes for k-mer-corrected files into an array ---------------- -unset infile_rcor_prefix -typeset -a infile_rcor_prefix -while IFS=" " read -r -d $'\0'; do - infile_rcor_prefix+=( "${REPLY%_R?.cor.fq.gz}" ) -done < <(\ - find "./${d_exp}/fastq_rcor" \ - -type f \ - -name *.cor.fq.gz \ - -print0 \ - | sort -z \ -) -# echoTest "${infile_rcor_prefix[@]}" - -IFS=" " read -r -a infile_rcor_prefix \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${infile_rcor_prefix[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -# # echoTest "${infile_rcor_prefix[@]}" -# ./files_processed-rcor-only/fastq_rcor/5781_G1_IN_merged -# ./files_processed-rcor-only/fastq_rcor/5781_G1_IP_merged -# ./files_processed-rcor-only/fastq_rcor/5781_Q_IN_merged -# ./files_processed-rcor-only/fastq_rcor/5781_Q_IP_merged -# ./files_processed-rcor-only/fastq_rcor/5782_G1_IN_merged -# ./files_processed-rcor-only/fastq_rcor/5782_G1_IP_merged -# ./files_processed-rcor-only/fastq_rcor/5782_Q_IN_merged -# ./files_processed-rcor-only/fastq_rcor/5782_Q_IP_merged - - -# Generate job submission script --------------------------------------------- -# First, check that we have/can access the Python script for correction of -#+ .fq outfiles from rcorrector -if [[ -f "../../bin/filter_rCorrector-treated-fastqs.py" ]]; then - echo TRUE -else - echo FALSE -fi -# TRUE - - -# Run the jobs --------------------------------------------------------------- -script_name="submit_run-rcorrector-corrector.sh" -threads=1 -storage="./${d_exp}/fastq_rcor-cor" # ., "${storage}" -correction_script="../../bin/filter_rCorrector-treated-fastqs.py" # ., "${correction_script}" - -count=1 # echo "${count}" -for i in "${infile_rcor_prefix[@]}"; do - # i="${infile_rcor_prefix[0]}" # echo "${i}" - base=$(basename "${i}") # echo "${base}" - - where="${storage}" # echo "${where}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - - correction script: $(basename "${correction_script}") - read_1: ${base}_R1.cor.fq.gz - read_2: ${base}_R2.cor.fq.gz - sample ID: ${base} - storage: ${where} - threads: ${threads} - - correction script (full): ${correction_script} - read_1 (full): ${i}_R1.cor.fq.gz - read_2 (full): ${i}_R2.cor.fq.gz - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${correction_script}" \ - # "${i}_R1.cor.fq.gz" \ - # "${i}_R2.cor.fq.gz" \ - # "${base}" \ - # "${where}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${correction_script}" \ - "${i}_R1.cor.fq.gz" \ - "${i}_R2.cor.fq.gz" \ - "${base}" \ - "${where}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) -done - -# Move *.counts.txt and *.proportions.txt files from "$(pwd)" to "${storage}" -#+ -#+ This is the result of something that needs to be fixed in the Python script; -#+ details are included in the corresponding #TODO item below -#DEKHO #PICKBACKUP -mv -- *.txt "${storage}" - - -# Rename the outfiles from "rcorrector correction" --------------------------- -# Remove the new prefix, change the suffix to reflect the recent processing -#TODO 1/2 Change filter_rCorrector-treated-fastqs.py so that no prefix is added -#TODO 2/2 and, instead, the suffix is changed -unset infile_rcor_cor -typeset -a infile_rcor_cor -while IFS=" " read -r -d $'\0'; do - infile_rcor_cor+=( "${REPLY}" ) -done < <(\ - find "./${d_exp}/fastq_rcor-cor" \ - -type f \ - -name unfixrm.*.cor.fq.gz \ - -print0 \ - | sort -z \ -) -echoTest "${infile_rcor_cor[@]}" -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5781_G1_IN_merged_R1.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5781_G1_IN_merged_R2.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5781_G1_IP_merged_R1.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5781_G1_IP_merged_R2.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5781_Q_IN_merged_R1.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5781_Q_IN_merged_R2.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5781_Q_IP_merged_R1.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5781_Q_IP_merged_R2.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5782_G1_IN_merged_R1.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5782_G1_IN_merged_R2.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5782_G1_IP_merged_R1.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5782_G1_IP_merged_R2.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5782_Q_IN_merged_R1.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5782_Q_IN_merged_R2.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5782_Q_IP_merged_R1.cor.fq.gz -# ./files_processed-rcor-only/fastq_rcor-cor/unfixrm.5782_Q_IP_merged_R2.cor.fq.gz - -which rename -# /home/kalavatt/miniconda3/envs/Trinity_env/bin/rename - -# Test... -for i in "${infile_rcor_cor[@]}"; do - echo "# ----------------------------------------" - rename -n 's/unfixrm.//g' "${i}" - rename -n 's/.cor.fq.gz/.unfixrm.cor.fq.gz/g' "${i}" - echo "" -done - -# Rename things: Part 1 -for i in "${infile_rcor_cor[@]}"; do - rename 's/.cor.fq.gz/.unfixrm.cor.fq.gz/g' "${i}" -done - -# Rename things: Part 2 -for i in "${infile_rcor_cor[@]}"; do - rename 's/unfixrm.57/57/g' "${i%.cor.fq.gz}.unfixrm.cor.fq.gz" -done -``` -
-
- - -## Generate "processed-rcor-only" (`rcorrector`) `.bam`s - -### Align the k-mer-corrected `.fastq` files -`#DEKHO` -```bash -#!/bin/bash -#DONTRUN - -grabnode # 1 core, default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Get .fastq-file prefixes for corrected rcor files into an array ------------ -d_exp="files_processed-rcor-only" - -unset infile_rcor_cor -typeset -a infile_rcor_cor -while IFS=" " read -r -d $'\0'; do - infile_rcor_cor+=( "${REPLY%_R?.unfixrm.cor.fq.gz}" ) -done < <(\ - find "./${d_exp}/fastq_rcor-cor" \ - -type f \ - -name *.unfixrm.cor.fq.gz \ - -print0 \ - | sort -z \ -) - -IFS=" " read -r -a infile_rcor_cor \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${infile_rcor_cor[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -echoTest "${infile_rcor_cor[@]}" -# ./files_processed-rcor-only/fastq_rcor-cor/5781_G1_IN_merged -# ./files_processed-rcor-only/fastq_rcor-cor/5781_G1_IP_merged -# ./files_processed-rcor-only/fastq_rcor-cor/5781_Q_IN_merged -# ./files_processed-rcor-only/fastq_rcor-cor/5781_Q_IP_merged -# ./files_processed-rcor-only/fastq_rcor-cor/5782_G1_IN_merged -# ./files_processed-rcor-only/fastq_rcor-cor/5782_G1_IP_merged -# ./files_processed-rcor-only/fastq_rcor-cor/5782_Q_IN_merged -# ./files_processed-rcor-only/fastq_rcor-cor/5782_Q_IP_merged - - -# Generate the job submission scripts ---------------------------------------- -#NOTE Can't use previous scripts! They can't handle gzipped files -#DONE Write new scripts with STAR argument --readFilesCommand zcat -threads=8 -for i in 1 5 10 15 50 100 1000; do - for j in Local EndToEnd; do - script_name="submit_align_multi-hit-mode_${i}_${j}.sh" - - if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" - fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -read_1="\${1}" -read_2="\${2}" -prefix="\${3}" -genome_dir="\${4}" - -echo -e "STAR \\ \n\ - --runMode alignReads \\ \n\ - --runThreadN "\${SLURM_CPUS_ON_NODE}" \\ \n\ - --outSAMtype BAM SortedByCoordinate \\ \n\ - --outSAMunmapped None \\ \n\ - --outSAMattributes All \\ \n\ - --genomeDir "\${genome_dir}" \\ \n\ - --readFilesIn "\${read_1}" "\${read_2}" \\ \n\ - --readFilesCommand zcat \\ \n\ - --outFileNamePrefix "\${prefix}" \\ \n\ - --limitBAMsortRAM 4000000000 \\ \n\ - --outFilterMultimapNmax ${i} \\ \n\ - --winAnchorMultimapNmax 1000 \\ \n\ - --alignSJoverhangMin 8 \\ \n\ - --alignSJDBoverhangMin 1 \\ \n\ - --outFilterMismatchNmax 999 \\ \n\ - --outMultimapperOrder Random \\ \n\ - --alignEndsType ${j} \\ \n\ - --alignIntronMin 4 \\ \n\ - --alignIntronMax 5000 \\ \n\ - --alignMatesGapMax 5000" - -STAR \\ - --runMode alignReads \\ - --runThreadN "\${SLURM_CPUS_ON_NODE}" \\ - --outSAMtype BAM SortedByCoordinate \\ - --outSAMunmapped None \\ - --outSAMattributes All \\ - --genomeDir "\${genome_dir}" \\ - --readFilesIn "\${read_1}" "\${read_2}" \\ - --readFilesCommand zcat \\ - --outFileNamePrefix "\${prefix}" \\ - --limitBAMsortRAM 4000000000 \\ - --outFilterMultimapNmax ${i} \\ - --winAnchorMultimapNmax 1000 \\ - --alignSJoverhangMin 8 \\ - --alignSJDBoverhangMin 1 \\ - --outFilterMismatchNmax 999 \\ - --outMultimapperOrder Random \\ - --alignEndsType ${j} \\ - --alignIntronMin 4 \\ - --alignIntronMax 5000 \\ - --alignMatesGapMax 5000 -script - done -done - - -# Run the jobs --------------------------------------------------------------- -genome_dir="${HOME}/genomes/combined_SC_KL_20S/STAR" # ., "${genome_dir}" -threads=8 # echo "${threads}" -storage="./${d_exp}/bam_rcor-cor" # ., "${storage}" - -count=1 -for i in "${infile_rcor_cor[@]}"; do - # i="${infile_rcor_cor[0]}" # echo "${i}" - for j in 1 5 10 15 50 100 1000; do - for k in "Local" "EndToEnd"; do - # j=1 # echo "${j}" - # k="Local" # echo "${k}" - script_name="submit_align_multi-hit-mode_${j}_${k}.sh" # echo "${script_name}" - pre="$(basename "${i}").rcor" # echo "${pre}" - suf=$(\ - echo "${script_name}" \ - | awk -F "_" '{ print $3"_"$4"_"$5"_"$6 }' \ - | awk -F "." '{ print $1 }' - ) # echo "${suf}" - where="${storage}/${k}/${pre}.${suf}" # echo "${where}" - where_etc="${where}/${pre}.${suf}" # echo "${where_etc}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - with the following arguments: - read_1: ${i}_R1.unfixrm.cor.fq.gz - read_2: ${i}_R2.unfixrm.cor.fq.gz - prefix: ${where_etc} - genome_dir: ${genome_dir} - alignment mode: ${k} - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}_R1.unfixrm.cor.fq.gz" \ - # "${i}_R2.unfixrm.cor.fq.gz" \ - # "${where_etc}" \ - # "${genome_dir}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}_R1.unfixrm.cor.fq.gz" \ - "${i}_R2.unfixrm.cor.fq.gz" \ - "${where_etc}" \ - "${genome_dir}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) - done - done -done -``` - - -### Clean up results of `STAR` alignment, index `.bam`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # 16 cores, default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Clean up results of STAR alignment ----------------------------------------- -d_exp="files_processed-rcor-only" - -# stackoverflow.com/questions/16541582/find-multiple-files-and-rename-them-in-linux -find "./${d_exp}/bam_rcor-cor" \ - -iname "*Aligned.sortedByCoord.out.bam" \ - -exec rename 's/Aligned./.Aligned./g' '{}' \; - -find "./${d_exp}/bam_rcor-cor" \ - -iname "*Log.*" \ - -exec rename 's/Log./.Log./g' '{}' \; - -find "./${d_exp}/bam_rcor-cor" \ - -iname "*SJ.*" \ - -exec rename 's/SJ./.SJ./g' '{}' \; - -# stackoverflow.com/questions/2810838/finding-empty-directories -cd ./${d_exp}/bam_rcor-cor -find . -depth -type d -empty -delete - -# Get back to the main working directory -mwd - - -# Create an array for .bam files of interest --------------------------------- -unset infiles_mapped -while IFS=" " read -r -d $'\0'; do - infiles_mapped+=( "${REPLY}" ) -done < <(\ - find "./${d_exp}/bam_rcor-cor" \ - -type f \ - -name *rcor.*.Aligned.sortedByCoord.out.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_mapped[@]}" -# echo "${#infiles_mapped[@]}" - - -# Run samtools index on each element of .bam array --------------------------- -for i in "${infiles_mapped[@]}"; do - # echo "samtools index -@ 8 \"${i}\"" - samtools index -@ 16 "${i}" -done -``` - - -### Filter out non-*S. cerevisiae* alignments -```bash -#!/bin/bash -#DONTRUN - -grabnode # 1 core, default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Create an array for .bam files of interest --------------------------------- -d_exp="files_processed-rcor-only" - -unset infiles_mapped -while IFS=" " read -r -d $'\0'; do - infiles_mapped+=( "${REPLY}" ) -done < <(\ - find "./${d_exp}/bam_rcor-cor" \ - -type f \ - -name *rcor.*.Aligned.sortedByCoord.out.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_mapped[@]}" -# echo "${#infiles_mapped[@]}" - - -# Generate job submission script --------------------------------------------- -# NOTE 1/2 Necessary script, "submit_split-bam.sh", was generated in -#+ NOTE 2/2 work_generate-data_unprocessed.md - - -# Run the jobs --------------------------------------------------------------- -script_name="submit_split-bam.sh" # ., "./sh_err_out/${script_name}" -threads=4 -storage="./${d_exp}/bam_rcor-cor_split" # ., "${storage}" -chromosomes="I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" -split="sc_all" - -count=1 # echo "${count}" -for i in "${infiles_mapped[@]}"; do - # i="${infiles_mapped[0]}" # ., "${i}" - base=$(basename "${i}" .bam) # echo "${base}" - - if [[ "${base}" == *"_EndToEnd"* ]]; then - k="EndToEnd" - elif [[ "${base}" == *"_Local"* ]]; then - k="Local" - else - help=""" - Exiting: An error was encountered when determining STAR alignment mode; - check on this - """ - echo "${help}" - # exit 1 - fi - # echo "${k}" - - outfile="${base}.${split}.bam" # echo "${outfile}" - - where="${storage}/${k}" # echo "${where}" - where_etc="${where}/${outfile}" # echo "${where_etc}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - - bam infile: ${base}.bam - bam outfile: ${outfile} - chromosomes: ${chromosomes} - storage: ${where} - threads: ${threads} - - bam infile (full): ${i} - bam outfile (full): ${where_etc} - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}" \ - # "${where_etc}" \ - # "${chromosomes}" \ - # "${threads}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}" \ - "${where_etc}" \ - "${chromosomes}" \ - "${threads}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) -done -``` - - -### Index the *S. cerevisiae*-only `.bam`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # 16 cores, default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Create an array for .bam files of interest --------------------------------- -d_exp="files_processed-rcor-only" - -unset infiles_mapped_sc -while IFS=" " read -r -d $'\0'; do - infiles_mapped_sc+=( "${REPLY}" ) -done < <(\ - find "./${d_exp}/bam_rcor-cor_split" \ - -type f \ - -name *.sc_all.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_mapped_sc[@]}" -# echo "${#infiles_mapped_sc[@]}" - - -# Run samtools index on each element of .bam array --------------------------- -for i in "${infiles_mapped_sc[@]}"; do - # echo "samtools index -@ 8 \"${i}\"" - samtools index -@ 16 "${i}" -done -``` -
-
- - -## Convert `*_multi-hit-mode_1_*.bam`s back to `.fastq`s -Convert the the k-mer-corrected, non-multi-hit-mode (i.e., those with the substring "`_multi-hit-mode_1_`"), *S. cerevisiae*-filtered `.bam`s to .`fastq`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # 1 core, default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Create an array for .bam files of interest --------------------------------- -d_exp="files_processed-rcor-only" - -unset infiles_multi_1_sc -while IFS=" " read -r -d $'\0'; do - infiles_multi_1_sc+=( "${REPLY}" ) -done < <(\ - find "./${d_exp}/bam_rcor-cor_split" \ - -type f \ - -name *rcor.multi-hit-mode_1_*.sc_all.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_multi_1_sc[@]}" -# echo "${#infiles_multi_1_sc[@]}" - - -# Generate job submission script --------------------------------------------- -# NOTE 1/2 Necessary script, "submit_convert-bam-fastq.sh", was generated in -#+ NOTE 2/2 work_generate-data_unprocessed.md - - -# Run the jobs --------------------------------------------------------------- -script_name="submit_convert-bam-fastq.sh" -threads=4 -storage="./${d_exp}/fastq_rcor-cor_split" # ., "${storage}" - -count=1 # echo "${count}" -for i in "${infiles_multi_1_sc[@]}"; do - # i="${infiles_multi_1_sc[0]}" # echo "${i}" - base=$(basename "${i}" .bam) # echo "${base}" - - if [[ "${base}" == *"_EndToEnd"* ]]; then - k="EndToEnd" - elif [[ "${base}" == *"_Local"* ]]; then - k="Local" - else - help=""" - Exiting: An error was encountered when determining STAR alignment mode; - check on this - """ - echo "${help}" - # exit 1 - fi - # echo "${k}" - - where="${storage}/${k}" # echo "${where}" - where_etc="${where}/${base}" # echo "${where_etc}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - - bam infile: ${base}.bam - fastq outfile #1: ${base}.1.fq.gz - fastq outfile #2: ${base}.2.fq.gz - storage: ${where} - threads: ${threads} - - bam infile (full): ${i} - fastq outfile #1 (full): ${where_etc}.1.fq.gz - fastq outfile #2 (full): ${where_etc}.2.fq.gz - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}" \ - # "${where_etc}" \ - # "${threads}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}" \ - "${where_etc}" \ - "${threads}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) -done -``` -
-
- -
-Code snippets for checking on jobs - -```bash -list_running_IDs() { - squeue -h -u "$(whoami)" \ - | tr -s ' ' \ - | sed 's/^ //g' \ - | tr ' ' '\t' \ - | cut -f 1,5 \ - | awk -F '\t' '{ $2 = R; print }' -} - - -alias count_running="list_running_IDs | wc -l" -``` -
-
diff --git a/results/2022-1201/work_generate-data_preprocessed.md b/results/2022-1201/work_generate-data_preprocessed.md deleted file mode 100644 index 434f1ec..0000000 --- a/results/2022-1201/work_generate-data_preprocessed.md +++ /dev/null @@ -1,642 +0,0 @@ - -# `work_generate-data_preprocessed.md` - -
-Table of contents - - -1. [Symlink to `.fastq` files of interest](#symlink-to-fastq-files-of-interest) -1. [Perform adapter and quality trimming of the `.fastq`s](#perform-adapter-and-quality-trimming-of-the-fastqs) -1. [Generate "unprocessed `.bam`s"](#generate-unprocessed-bams) - 1. [Align the adapter- and quality-trimmed `.fastq` files](#align-the-adapter--and-quality-trimmed-fastq-files) - 1. [Clean up results of `STAR` alignment, index `.bam`s](#clean-up-results-of-star-alignment-index-bams) - 1. [Filter out non-*S. cerevisiae* alignments](#filter-out-non-s-cerevisiae-alignments) - 1. [Index the *S. cerevisiae*-only `.bam`s](#index-the-s-cerevisiae-only-bams) -1. [Convert `*_multi-hit-mode_1_*.bam`s back to `.fastq`s](#convert-_multi-hit-mode_1_bams-back-to-fastqs) - - - -
-
- - -## Symlink to `.fastq` files of interest -- `#DONE` See `work_generate-data_unprocessed.md` -- Files are in `${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_fastq_symlinks` -
-
- - -## Perform adapter and quality trimming of the `.fastq`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Get fastq file prefixes into an array -------------------------------------- -unset infile_bases -typeset -a infile_bases -while IFS=" " read -r -d $'\0'; do - infile_bases+=( "${REPLY%_R?.fastq}" ) -done < <(\ - find "files_fastq_symlinks" \ - -type l \ - -name *.fastq \ - -print0 \ - | sort -z \ -) -# echoTest "${infile_bases[@]}" - -IFS=" " read -r -a infile_bases \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${infile_bases[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -# echoTest "${infile_bases[@]}" - - -# Generate job submission script --------------------------------------------- -script_name="submit_trim-fastqs.sh" -threads=1 - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -instring="\${1}" -outdir="\${2}" - -# Echo test -parallel --header : --colsep " " -k -j 1 echo -e \\ -"trim_galore \\ - --paired \\ - --retain_unpaired \\ - --phred33 \\ - --output_dir {outdir} \\ - --length 36 \\ - --quality 5 \\ - --stringency 1 \\ - -e 0.1 \\ - {sample}_R1.fastq \\ - {sample}_R2.fastq" \\ -::: sample "\${instring}" \\ -::: outdir "\${outdir}" - -# Run trim_galore -parallel --header : --colsep " " -k -j 1 \\ -"trim_galore \\ - --paired \\ - --retain_unpaired \\ - --phred33 \\ - --output_dir {outdir} \\ - --length 36 \\ - --quality 5 \\ - --stringency 1 \\ - -e 0.1 \\ - {sample}_R1.fastq \\ - {sample}_R2.fastq" \\ -::: sample "\${instring}" \\ -::: outdir "\${outdir}" - -echo "" -script - - -# Run the jobs --------------------------------------------------------------- -# script_name="submit_trim-fastqs.sh" #NOTE Defined -# threads=1 #NOTE Defined -storage="./files_processed/fastq_trim" - -count=1 # echo "${count}" -for i in "${infile_bases[@]}"; do - # i="${infile_bases[0]}" # echo "${i}" - base=$(basename "${i}") # echo "${base}" - - where="${storage}" # echo "${where}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - - instring: ${base} - outstring: ${base} - storage: ${where} - threads: ${threads} - - instring (full): ${i} - outstring (full): ${where}/${base} - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - # mkdir: created directory './files_processed' - # mkdir: created directory './files_processed/fastq_trim' - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}" \ - # "${where}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}" \ - "${where}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) -done -``` - -
-Results of echo test: - -```txt -trim_galore --paired --retain_unpaired --phred33 --output_dir ./files_processed/fastq_trim --length 36 --quality 5 --stringency 1 -e 0.1 files_fastq_symlinks/5781_G1_IN_merged_R1.fastq files_fastq_symlinks/5781_G1_IN_merged_R2.fastq -``` -
-
-
- - -## Generate "unprocessed `.bam`s" - -### Align the adapter- and quality-trimmed `.fastq` files -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Get .fastq-file prefixes for trimmed files into an array ------------------- -unset infiles_fastq_trimmed -typeset -a infiles_fastq_trimmed -while IFS=" " read -r -d $'\0'; do - infiles_fastq_trimmed+=( "${REPLY%_R?_val_?.fq}" ) -done < <(\ - find ./files_processed/fastq_trim \ - -type f \ - -name *_R?_val_?.fq \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_fastq_trimmed[@]}" - -IFS=" " read -r -a infiles_fastq_trimmed \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${infiles_fastq_trimmed[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -# # echoTest "${infiles_fastq_trimmed[@]}" -# ./files_processed/fastq_trim/5781_G1_IN_merged -# ./files_processed/fastq_trim/5781_G1_IP_merged -# ./files_processed/fastq_trim/5781_Q_IN_merged -# ./files_processed/fastq_trim/5781_Q_IP_merged -# ./files_processed/fastq_trim/5782_G1_IN_merged -# ./files_processed/fastq_trim/5782_G1_IP_merged -# ./files_processed/fastq_trim/5782_Q_IN_merged -# ./files_processed/fastq_trim/5782_Q_IP_merged - - -# Generate the job submission scripts ---------------------------------------- -#NOTE 1/2 Script "submit_align_un_multi-hit-mode_${i}_${j}.sh" was generated in -#NOTE 2/2 work_generate-data_unprocessed.md - - -# Run the jobs --------------------------------------------------------------- -genome_dir="${HOME}/genomes/combined_SC_KL_20S/STAR" -threads=8 -storage="./files_processed/bam_trim" - -count=1 -for i in "${infiles_fastq_trimmed[@]}"; do - for j in 1 10 100 1000; do - for k in "Local" "EndToEnd"; do - # j=1 - # k="Local" - script_name="submit_align_un_multi-hit-mode_${j}_${k}.sh" - pre="$(basename "${i}").trim" # echo "${pre}" - suf=$(\ - echo "${script_name}" \ - | awk -F "_" '{ print $3"_"$4"_"$5"_"$6 }' \ - | awk -F "." '{ print $1 }' - ) # echo "${suf}" - where="${storage}/${k}/${pre}.${suf}" # echo "${where}" - where_etc="${where}/${pre}.${suf}" # echo "${where_etc}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - with the following arguments: - read_1: ${i}_R1_val_1.fq - read_2: ${i}_R2_val_2.fq - prefix: ${where_etc} - genome_dir: ${genome_dir} - alignment mode: ${k} - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}_R1_val_1.fq" \ - # "${i}_R2_val_2.fq" \ - # "${where_etc}" \ - # "${genome_dir}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}_R1_val_1.fq" \ - "${i}_R2_val_2.fq" \ - "${where_etc}" \ - "${genome_dir}" - - # To avoid tripping any alarms, slow down the rate of job - #+ submission - sleep 0.25 - - echo "" - echo "" - - (( count++ )) - done - done -done -``` - - -### Clean up results of `STAR` alignment, index `.bam`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # Four cores and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Clean up results of STAR alignment ----------------------------------------- -# stackoverflow.com/questions/16541582/find-multiple-files-and-rename-them-in-linux -find ./files_processed -iname "*Aligned.sortedByCoord.out.bam" -exec rename 's/Aligned./.Aligned./g' '{}' \; -find ./files_processed -iname "*Log.*" -exec rename 's/Log./.Log./g' '{}' \; -find ./files_processed -iname "*SJ.*" -exec rename 's/SJ./.SJ./g' '{}' \; - -# stackoverflow.com/questions/2810838/finding-empty-directories -cd files_processed/bam_trim -find . -depth -type d -empty -delete - -# Get back to the main working directory -mwd - - -# Create an array for .bam files of interest --------------------------------- -unset infiles_mapped -while IFS=" " read -r -d $'\0'; do - infiles_mapped+=( "${REPLY}" ) -done < <(\ - find ./files_processed \ - -type f \ - -name *.Aligned.sortedByCoord.out.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_mapped[@]}" -# echo "${#infiles_mapped[@]}" - - -# Run samtools index on each element of .bam array --------------------------- -for i in "${infiles_mapped[@]}"; do - # echo "samtools index -@ 4 \"${i}\"" - samtools index -@ 4 "${i}" -done -``` - -`#DEKHO` - -### Filter out non-*S. cerevisiae* alignments -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Create an array for .bam files of interest --------------------------------- -unset infiles_mapped -while IFS=" " read -r -d $'\0'; do - infiles_mapped+=( "${REPLY}" ) -done < <(\ - find ./files_processed \ - -type f \ - -name *.Aligned.sortedByCoord.out.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_mapped[@]}" -# echo "${#infiles_mapped[@]}" - - -# Generate job submission script --------------------------------------------- -# NOTE 1/2 Necessary script, "submit_split-bam.sh", was generated in -#+ NOTE 2/2 work_generate-data_unprocessed.md - - -# Run the jobs --------------------------------------------------------------- -script_name="submit_split-bam.sh" -threads=4 -storage="./files_processed/bam_trim_split" # ., "${storage}" -chromosomes="I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" -split="sc_all" - -count=1 # echo "${count}" -for i in "${infiles_mapped[@]}"; do - # i="${infiles_mapped[0]}" # ., "${i}" - base=$(basename "${i}" .bam) # echo "${base}" - - if [[ "${base}" == *"_EndToEnd"* ]]; then - k="EndToEnd" - elif [[ "${base}" == *"_Local"* ]]; then - k="Local" - else - help=""" - Exiting: An error was encountered when determining STAR alignment mode; - check on this - """ - echo "${help}" - # exit 1 - fi - # echo "${k}" - - outfile="${base}.${split}.bam" # echo "${outfile}" - - where="${storage}/${k}" # echo "${where}" - where_etc="${where}/${outfile}" # echo "${where_etc}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - - bam infile: ${base}.bam - bam outfile: ${outfile} - chromosomes: ${chromosomes} - storage: ${where} - threads: ${threads} - - bam infile (full): ${i} - bam outfile (full): ${where_etc} - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - # mkdir: created directory './files_unprocessed/bam_split' - # mkdir: created directory './files_unprocessed/bam_split/EndToEnd' - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}" \ - # "${where_etc}" \ - # "${chromosomes}" \ - # "${threads}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}" \ - "${where_etc}" \ - "${chromosomes}" \ - "${threads}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) -done -``` - - -### Index the *S. cerevisiae*-only `.bam`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # Eight cores, default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Create an array for .bam files of interest --------------------------------- -unset infiles_mapped_sc -while IFS=" " read -r -d $'\0'; do - infiles_mapped_sc+=( "${REPLY}" ) -done < <(\ - find ./files_processed \ - -type f \ - -name *.sc_all.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_mapped_sc[@]}" -# echo "${#infiles_mapped_sc[@]}" - - -# Run samtools index on each element of .bam array --------------------------- -for i in "${infiles_mapped_sc[@]}"; do - # echo "samtools index -@ 8 \"${i}\"" - samtools index -@ 8 "${i}" -done -``` -
-
- - -## Convert `*_multi-hit-mode_1_*.bam`s back to `.fastq`s -Convert the the adapter-/quality-trimmed, non-multi-hit-mode (i.e., those with the substring "`_multi-hit-mode_1_`"), *S. cerevisiae*-filtered `.bam`s to .`fastq`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Create an array for .bam files of interest --------------------------------- -unset infiles_multi_1_sc -while IFS=" " read -r -d $'\0'; do - infiles_multi_1_sc+=( "${REPLY}" ) -done < <(\ - find ./files_processed \ - -type f \ - -name *_multi-hit-mode_1_*.sc_all.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_multi_1_sc[@]}" -# echo "${#infiles_multi_1_sc[@]}" - - -# Generate job submission script --------------------------------------------- -# NOTE 1/2 Necessary script, "submit_convert-bam-fastq.sh", was generated in -#+ NOTE 2/2 work_generate-data_unprocessed.md - - -# Run the jobs --------------------------------------------------------------- -script_name="submit_convert-bam-fastq.sh" -threads=4 -storage="./files_processed/fastq_trim_split" - -count=1 # echo "${count}" -for i in "${infiles_multi_1_sc[@]}"; do - # i="${infiles_multi_1_sc[0]}" # echo "${i}" - base=$(basename "${i}" .bam) # echo "${base}" - - if [[ "${base}" == *"_EndToEnd"* ]]; then - k="EndToEnd" - elif [[ "${base}" == *"_Local"* ]]; then - k="Local" - else - help=""" - Exiting: An error was encountered when determining STAR alignment mode; - check on this - """ - echo "${help}" - # exit 1 - fi - # echo "${k}" - - where="${storage}/${k}" # echo "${where}" - where_etc="${where}/${base}" # echo "${where_etc}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - - bam infile: ${base}.bam - fastq outfile #1: ${base}.1.fq.gz - fastq outfile #2: ${base}.2.fq.gz - storage: ${where} - threads: ${threads} - - bam infile (full): ${i} - fastq outfile #1 (full): ${where_etc}.1.fq.gz - fastq outfile #2 (full): ${where_etc}.2.fq.gz - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - # mkdir: created directory './files_unprocessed/fastq_split' - # mkdir: created directory './files_unprocessed/fastq_split/EndToEnd' - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}" \ - # "${where_etc}" \ - # "${threads}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}" \ - "${where_etc}" \ - "${threads}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) -done -``` diff --git a/results/2022-1201/work_generate-data_unprocessed.md b/results/2022-1201/work_generate-data_unprocessed.md deleted file mode 100644 index 3aff723..0000000 --- a/results/2022-1201/work_generate-data_unprocessed.md +++ /dev/null @@ -1,857 +0,0 @@ - -# `work_generate-data_unprocessed.md` - -
-Table of contents - - -1. [Symlink to `.fastq` files of interest](#symlink-to-fastq-files-of-interest) -1. [Align `.fastq`s to generate "unprocessed `.bam`s"](#align-fastqs-to-generate-unprocessed-bams) - 1. [Set up a directory for unprocessed `.fastq`s and `.bam`s](#set-up-a-directory-for-unprocessed-fastqs-and-bams) -1. [Generate "unprocessed `.bam`s"](#generate-unprocessed-bams) - 1. [Perform the initial alignment](#perform-the-initial-alignment) - 1. [Clean up results of `STAR` alignment, index `.bam`s](#clean-up-results-of-star-alignment-index-bams) - 1. [Filter out non-*S. cerevisiae* alignments](#filter-out-non-s-cerevisiae-alignments) - 1. [Index the *S. cerevisiae*-only `.bam`s](#index-the-s-cerevisiae-only-bams) -1. [Convert `*_multi-hit-mode_1_*.bam`s back to `.fastq`s](#convert-_multi-hit-mode_1_bams-back-to-fastqs) -1. [Rough-draft: Limit number of jobs submitted to `SLURM`](#rough-draft-limit-number-of-jobs-submitted-to-slurm) - - -
-
- - -## Symlink to `.fastq` files of interest -```bash -#!/bin/bash -#DONTRUN - -# grabnode # Can do this on rhino - -Trinity_env - -cd "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" - -#NOTE 1/2 Base directory containing subdirectories with original merged .fastq -#NOTE 2/2 files: "${HOME}/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot" - -# Get the .fastq files into an array we can loop over -unset infiles -typeset -a infiles -while IFS=" " read -r -d $'\0'; do - infiles+=( "${REPLY}" ) -done < <(\ - find ${HOME}/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot \ - -type f \ - -name *578*merged*fastq* \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles[@]}" -# for i in "${infiles[@]}"; do echo "$(basename "${i}")"; done - -# Make symlinks to the .fastq files in 2022_transcriptome-contructions results -mkdir -p \ - "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_fastq_symlinks" - -for i in "${infiles[@]}"; do - ln -s \ - "${i}" \ - "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_fastq_symlinks/$(basename ${i})" -done - -# Check on things -., files_fastq_symlinks - -``` - -
-., files_fastq_symlinks - -```txt -total 544K -drwxrws--- 2 kalavatt 696 Dec 3 08:57 ./ -drwxrws--- 3 kalavatt 302 Dec 3 08:57 ../ -lrwxrwxrwx 1 kalavatt 105 Dec 3 08:57 5781_G1_IN_merged_R1.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_G1_IN/5781_G1_IN_merged_R1.fastq -lrwxrwxrwx 1 kalavatt 105 Dec 3 08:57 5781_G1_IN_merged_R2.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_G1_IN/5781_G1_IN_merged_R2.fastq -lrwxrwxrwx 1 kalavatt 105 Dec 3 08:57 5781_G1_IP_merged_R1.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_G1_IP/5781_G1_IP_merged_R1.fastq -lrwxrwxrwx 1 kalavatt 105 Dec 3 08:57 5781_G1_IP_merged_R2.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_G1_IP/5781_G1_IP_merged_R2.fastq -lrwxrwxrwx 1 kalavatt 103 Dec 3 08:57 5781_Q_IN_merged_R1.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_Q_IN/5781_Q_IN_merged_R1.fastq -lrwxrwxrwx 1 kalavatt 103 Dec 3 08:57 5781_Q_IN_merged_R2.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_Q_IN/5781_Q_IN_merged_R2.fastq -lrwxrwxrwx 1 kalavatt 103 Dec 3 08:57 5781_Q_IP_merged_R1.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_Q_IP/5781_Q_IP_merged_R1.fastq -lrwxrwxrwx 1 kalavatt 103 Dec 3 08:57 5781_Q_IP_merged_R2.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5781_Q_IP/5781_Q_IP_merged_R2.fastq -lrwxrwxrwx 1 kalavatt 105 Dec 3 08:57 5782_G1_IN_merged_R1.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5782_G1_IN/5782_G1_IN_merged_R1.fastq -lrwxrwxrwx 1 kalavatt 105 Dec 3 08:57 5782_G1_IN_merged_R2.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5782_G1_IN/5782_G1_IN_merged_R2.fastq -lrwxrwxrwx 1 kalavatt 105 Dec 3 08:57 5782_G1_IP_merged_R1.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5782_G1_IP/5782_G1_IP_merged_R1.fastq -lrwxrwxrwx 1 kalavatt 105 Dec 3 08:57 5782_G1_IP_merged_R2.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5782_G1_IP/5782_G1_IP_merged_R2.fastq -lrwxrwxrwx 1 kalavatt 103 Dec 3 08:57 5782_Q_IN_merged_R1.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5782_Q_IN/5782_Q_IN_merged_R1.fastq -lrwxrwxrwx 1 kalavatt 103 Dec 3 08:57 5782_Q_IN_merged_R2.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5782_Q_IN/5782_Q_IN_merged_R2.fastq -lrwxrwxrwx 1 kalavatt 103 Dec 3 08:57 5782_Q_IP_merged_R1.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5782_Q_IP/5782_Q_IP_merged_R1.fastq -lrwxrwxrwx 1 kalavatt 103 Dec 3 08:57 5782_Q_IP_merged_R2.fastq -> /home/kalavatt/tsukiyamalab/alisong/WTQvsG1/Project_ccucinot/Sample_5782_Q_IP/5782_Q_IP_merged_R2.fastq -``` -
-
-
- - -## Align `.fastq`s to generate "unprocessed `.bam`s" -`#NOTE` Alignment will result in unprocessed `.bam` files (unprocessed `.fastq` files are available in `results/2022-1201/files_fastq_symlinks/`) - - -### Set up a directory for unprocessed `.fastq`s and `.bam`s -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -., -total 454K -# drwxrws--- 3 kalavatt 462 Dec 3 12:26 ./ -# drwxrws--- 8 kalavatt 218 Dec 3 08:14 ../ -# drwxrws--- 2 kalavatt 696 Dec 3 08:57 files_fastq_symlinks/ -# -rw-rw---- 1 kalavatt 22 Dec 3 12:26 scratch.sh -# -rw-rw---- 1 kalavatt 39K Dec 2 13:16 work_fix-errors_2022-1101.md -# -rw-rw---- 1 kalavatt 4.2K Dec 3 12:26 work_preprocess_alignment-calls_compare-update.md -# -rw-rw---- 1 kalavatt 4.6K Dec 3 12:42 work_preprocessing_generate-un-and-preprocessed-data.md -# -rw-rw---- 1 kalavatt 4.0K Dec 2 14:14 work_Trinity-PASA_unprocessed-vs-preprocessed.md - -# Make the directories -mkdir -p files_unprocessed/bam/{Local,EndToEnd} -``` -
-
- - -## Generate "unprocessed `.bam`s" -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Make a directory to store submission scripts and also capture STDERR, STDOUT -#+ .txt files -mkdir -p sh_err_out/err_out -``` - - -### Perform the initial alignment -```bash -#!/bin/bash -#DONTRUN #CONTINUE - - -# Establish variables, arrays, etc. ------------------------------------------ -unset infiles_fastq_unprocessed -typeset -a infiles_fastq_unprocessed -while IFS=" " read -r -d $'\0'; do - infiles_fastq_unprocessed+=( "${REPLY%_R?.fastq}" ) -done < <(\ - find ./files_fastq_symlinks \ - -type l \ - -name *.fastq \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_fastq_unprocessed[@]}" - -IFS=" " read -r -a infiles_fastq_unprocessed \ - <<< "$(\ - tr ' ' '\n' \ - <<< "${infiles_fastq_unprocessed[@]}" \ - | sort -u \ - | tr '\n' ' '\ - )" -# # echoTest "${infiles_fastq_unprocessed[@]}" -# ./files_fastq_symlinks/5781_G1_IN_merged -# ./files_fastq_symlinks/5781_G1_IP_merged -# ./files_fastq_symlinks/5781_Q_IN_merged -# ./files_fastq_symlinks/5781_Q_IP_merged -# ./files_fastq_symlinks/5782_G1_IN_merged -# ./files_fastq_symlinks/5782_G1_IP_merged -# ./files_fastq_symlinks/5782_Q_IN_merged -# ./files_fastq_symlinks/5782_Q_IP_merged - - -# Generate the job submission scripts ---------------------------------------- -for i in 1 10 100 1000; do - for j in Local EndToEnd; do - script_name="submit_align_un_multi-hit-mode_${i}_${j}.sh" - - if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" - fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -read_1="\${1}" -read_2="\${2}" -prefix="\${3}" -genome_dir="\${4}" - -echo -e "STAR \\ \n\ - --runMode alignReads \\ \n\ - --runThreadN "\${SLURM_CPUS_ON_NODE}" \\ \n\ - --outSAMtype BAM SortedByCoordinate \\ \n\ - --outSAMunmapped None \\ \n\ - --outSAMattributes All \\ \n\ - --genomeDir "\${genome_dir}" \\ \n\ - --readFilesIn "\${read_1}" "\${read_2}" \\ \n\ - --outFileNamePrefix "\${prefix}" \\ \n\ - --limitBAMsortRAM 4000000000 \\ \n\ - --outFilterMultimapNmax ${i} \\ \n\ - --winAnchorMultimapNmax 1000 \\ \n\ - --alignSJoverhangMin 8 \\ \n\ - --alignSJDBoverhangMin 1 \\ \n\ - --outFilterMismatchNmax 999 \\ \n\ - --outMultimapperOrder Random \\ \n\ - --alignEndsType ${j} \\ \n\ - --alignIntronMin 4 \\ \n\ - --alignIntronMax 5000 \\ \n\ - --alignMatesGapMax 5000" - -STAR \\ - --runMode alignReads \\ - --runThreadN "\${SLURM_CPUS_ON_NODE}" \\ - --outSAMtype BAM SortedByCoordinate \\ - --outSAMunmapped None \\ - --outSAMattributes All \\ - --genomeDir "\${genome_dir}" \\ - --readFilesIn "\${read_1}" "\${read_2}" \\ - --outFileNamePrefix "\${prefix}" \\ - --limitBAMsortRAM 4000000000 \\ - --outFilterMultimapNmax ${i} \\ - --winAnchorMultimapNmax 1000 \\ - --alignSJoverhangMin 8 \\ - --alignSJDBoverhangMin 1 \\ - --outFilterMismatchNmax 999 \\ - --outMultimapperOrder Random \\ - --alignEndsType ${j} \\ - --alignIntronMin 4 \\ - --alignIntronMax 5000 \\ - --alignMatesGapMax 5000 -script - done -done - - -# Run the jobs --------------------------------------------------------------- -genome_dir="${HOME}/genomes/combined_SC_KL_20S/STAR" -threads=8 -storage="./files_unprocessed/bam" - -count=1 -for i in "${infiles_fastq_unprocessed[@]}"; do - for j in 1 10 100 1000; do - for k in "Local" "EndToEnd"; do - # j=1 - # k="Local" - script_name="submit_align_un_multi-hit-mode_${j}_${k}.sh" - pre=$(basename "${i}") - suf=$(\ - echo "${script_name}" \ - | awk -F "_" '{ print $3"_"$4"_"$5"_"$6 }' \ - | awk -F "." '{ print $1 }' - ) - where="${storage}/${k}/${pre}.${suf}" - where_etc="${where}/${pre}.${suf}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - with the following arguments: - read_1: ${i}_R1.fastq - read_2: ${i}_R2.fastq - prefix: ${where_etc} - genome_dir: ${genome_dir} - alignment mode: ${k} - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}_R1.fastq" \ - # "${i}_R1.fastq" \ - # "${where_etc}" \ - # "${genome_dir}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}_R1.fastq" \ - "${i}_R2.fastq" \ - "${where_etc}" \ - "${genome_dir}" - - # To avoid tripping any alarms, slow down the rate of job - #+ submission - sleep 0.25 - - echo "" - echo "" - - (( count++ )) - done - done -done -``` - - -### Clean up results of `STAR` alignment, index `.bam`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Clean up results of STAR alignment ----------------------------------------- -# stackoverflow.com/questions/16541582/find-multiple-files-and-rename-them-in-linux -find . -iname "*Aligned.sortedByCoord.out.bam" -exec rename 's/Aligned./.Aligned./g' '{}' \; -find . -iname "*Log.*" -exec rename 's/Log./.Log./g' '{}' \; -find . -iname "*SJ.*" -exec rename 's/SJ./.SJ./g' '{}' \; - -# stackoverflow.com/questions/2810838/finding-empty-directories -cd files_unprocessed/bam -find . -depth -type d -empty -delete - -# Get back to the main working directory -mwd - - -# Create an array for .bam files of interest --------------------------------- -unset infiles_mapped -while IFS=" " read -r -d $'\0'; do - infiles_mapped+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name *.Aligned.sortedByCoord.out.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_mapped[@]}" -# echo "${#infiles_mapped[@]}" - - -# Run samtools index on each element of .bam array --------------------------- -for i in "${infiles_mapped[@]}"; do - # echo "samtools index \"${i}\"" - samtools index "${i}" -done -``` - - -### Filter out non-*S. cerevisiae* alignments -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Create an array for .bam files of interest --------------------------------- -unset infiles_mapped -while IFS=" " read -r -d $'\0'; do - infiles_mapped+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name *.Aligned.sortedByCoord.out.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_mapped[@]}" -# echo "${#infiles_mapped[@]}" - - -# Generate job submission script --------------------------------------------- -script_name="submit_split-bam.sh" -threads=4 - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -split_with_samtools() { - what=""" - split_with_samtools() - --------------------- - Use samtools to filter a bam file such that it contains only specified - chromosome(s) - - :param 1: threads = 1> - :param 2: bam infile, including path - :param 3: chromosomes to retain - :param 4: bam outfile, including path - :return: param 2 filtered to include only param 3 in param 4 - """ - samtools view -@ "\${1}" -h "\${2}" \${3} -o "\${4}" -} - - -infile="\${1}" -outfile="\${2}" -chromosomes="\${3}" -threads="\${4}" - -echo -e "split_with_samtools \\ \n\ - \"\${threads}\" \\ \n\ - \"\${infile}\" \\ \n\ - \"\${chromosomes}\" \\ \n\ - \"\${outfile}\"" - -split_with_samtools \\ - "\${threads}" \\ - "\${infile}" \\ - "\${chromosomes}" \\ - "\${outfile}" -script - - -# Run the jobs --------------------------------------------------------------- -# script_name="submit_split-bam.sh" #NOTE Defined above -# threads=4 #NOTE Defined above -storage="./files_unprocessed/bam_split" -chromosomes="I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" -split="sc_all" - -count=1 # echo "${count}" -for i in "${infiles_mapped[@]}"; do - # i="${infiles_mapped[0]}" # echo "${i}" - base=$(basename "${i}" .bam) # echo "${base}" - - # if [[ "${base}" == *"_1000_"* ]]; then - # j=1000 - # elif [[ "${base}" == *"_100_"* ]]; then - # j=100 - # elif [[ "${base}" == *"_10_"* ]]; then - # j=10 - # elif [[ "${base}" == *"_1_"* ]]; then - # j=1 - # else - # help=""" - # Exiting: An error was encountered when identifying multi-hit-mode - # integers; check on this - # """ - # echo "${help}" - # # exit 1 - # fi - # # echo "${j}" - - if [[ "${base}" == *"_EndToEnd"* ]]; then - k="EndToEnd" - elif [[ "${base}" == *"_Local"* ]]; then - k="Local" - else - help=""" - Exiting: An error was encountered when determining STAR alignment mode; - check on this - """ - echo "${help}" - # exit 1 - fi - # echo "${k}" - - outfile="${base}.${split}.bam" # echo "${outfile}" - - where="${storage}/${k}" # echo "${where}" - where_etc="${where}/${outfile}" # echo "${where_etc}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - - bam infile: ${base}.bam - bam outfile: ${outfile} - chromosomes: ${chromosomes} - storage: ${where} - threads: ${threads} - - bam infile (full): ${i} - bam outfile (full): ${where_etc} - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - # mkdir: created directory './files_unprocessed/bam_split' - # mkdir: created directory './files_unprocessed/bam_split/EndToEnd' - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}" \ - # "${where_etc}" \ - # "${chromosomes}" \ - # "${threads}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}" \ - "${where_etc}" \ - "${chromosomes}" \ - "${threads}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) -done -``` - -
-Results of echo test - -```txt -split_with_samtools \ - "4" \ - "./files_unprocessed/bam/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_1000_EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.bam" \ - "I II III IV V VI VII VIII IX X XI XII XIII XIV XV XVI Mito" \ - "./files_unprocessed/bam_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam" -``` -
- - -### Index the *S. cerevisiae*-only `.bam`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # Two cores, default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Create an array for .bam files of interest --------------------------------- -unset infiles_mapped_sc -while IFS=" " read -r -d $'\0'; do - infiles_mapped_sc+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name *.sc_all.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_mapped_sc[@]}" -# echo "${#infiles_mapped_sc[@]}" - - -# Run samtools index on each element of .bam array --------------------------- -for i in "${infiles_mapped_sc[@]}"; do - # echo "samtools index -@ 2 \"${i}\"" - samtools index -@ 2 "${i}" -done -``` -
-
- - -## Convert `*_multi-hit-mode_1_*.bam`s back to `.fastq`s -Convert the the non-multi-hit-mode (i.e., those with the substring "`_multi-hit-mode_1_`"), *S. cerevisiae*-filtered `.bam`s from to .`fastq`s -```bash -#!/bin/bash -#DONTRUN - -grabnode # Lowest and default settings - -Trinity_env - -# Go to the main working directory -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - - -# Create an array for .bam files of interest --------------------------------- -unset infiles_multi_1_sc -while IFS=" " read -r -d $'\0'; do - infiles_multi_1_sc+=( "${REPLY}" ) -done < <(\ - find . \ - -type f \ - -name *_multi-hit-mode_1_*.sc_all.bam \ - -print0 \ - | sort -z \ -) -# echoTest "${infiles_multi_1_sc[@]}" -# echo "${#infiles_multi_1_sc[@]}" - - -# Generate job submission script --------------------------------------------- -script_name="submit_convert-bam-fastq.sh" -threads=4 - -if [[ -f "./sh_err_out/${script_name}" ]]; then - rm "./sh_err_out/${script_name}" -fi -cat << script > "./sh_err_out/${script_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${script_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${script_name%.sh}.%J.out.txt - -# ${script_name} -# KA -# $(date '+%Y-%m%d') - -infile="\${1}" -outprefix="\${2}" -threads="\${3}" - -if [[ ! -f "\${infile%.bam}.sort-n.bam" ]]; then - echo -e "samtools sort -n -@ \"\${threads}\" \"\${infile}\" \\ \n\ - > \"\${infile%.bam}.sort-n.bam\"" - echo "" -fi - -echo -e "samtools fastq \\ \n\ - -@ \"\${threads}\" \\ \n\ - -1 \"\${outprefix}.1.fq.gz\" \\ \n\ - -2 \"\${outprefix}.2.fq.gz\" \\ \n\ - \"\${infile%.bam}.sort-n.bam\"" -echo "" - -if [[ ! -f "\${infile%.bam}.sort-n.bam" ]]; then - echo "QNAME-sorting \${infile}" - samtools sort -n -@ "\${threads}" "\${infile}" \\ - > "\${infile%.bam}.sort-n.bam" -fi - -echo "Converting QNAME-sorted bam to fastq files" -if [[ -f "\${infile%.bam}.sort-n.bam" ]]; then - samtools fastq \\ - -@ "\${threads}" \\ - -1 "\${outprefix}.1.fq.gz" \\ - -2 "\${outprefix}.2.fq.gz" \\ - "\${infile%.bam}.sort-n.bam" -else - echo "\${infile%.bam}.sort-n.bam is NOT present; check on this..." -fi -script -# find . -iname "*sort-n.bam" -exec ls -lhaFG '{}' \; -# find . -iname "*sort-n.bam" -exec rm '{}' \; - - -# Run the jobs --------------------------------------------------------------- -# script_name="submit_convert-bam-fastq.sh" #NOTE Defined above -# threads=4 #NOTE Defined above -storage="./files_unprocessed/fastq_split" - -count=1 # echo "${count}" -for i in "${infiles_multi_1_sc[@]}"; do - # i="${infiles_multi_1_sc[0]}" # echo "${i}" - base=$(basename "${i}" .bam) # echo "${base}" - - if [[ "${base}" == *"_EndToEnd"* ]]; then - k="EndToEnd" - elif [[ "${base}" == *"_Local"* ]]; then - k="Local" - else - help=""" - Exiting: An error was encountered when determining STAR alignment mode; - check on this - """ - echo "${help}" - # exit 1 - fi - # echo "${k}" - - where="${storage}/${k}" # echo "${where}" - where_etc="${where}/${base}" # echo "${where_etc}" - - # Report the iteration we're on with relevant information - echo "# ----------------------------------------" - message="""Submitting iteration ${count} of ${script_name} - - bam infile: ${base}.bam - fastq outfile #1: ${base}.1.fq.gz - fastq outfile #2: ${base}.2.fq.gz - storage: ${where} - threads: ${threads} - - bam infile (full): ${i} - fastq outfile #1 (full): ${where_etc}.1.fq.gz - fastq outfile #2 (full): ${where_etc}.2.fq.gz - """ - echo "${message}" - - # Make storage directories if they don't exist - if [[ ! -d "${where}" ]]; then mkdir "${where}"; fi - # mkdir: created directory './files_unprocessed/fastq_split' - # mkdir: created directory './files_unprocessed/fastq_split/EndToEnd' - - # # Echo test - # bash "./sh_err_out/${script_name}" \ - # "${i}" \ - # "${where_etc}" \ - # "${threads}" - - # Submit the job - sbatch "./sh_err_out/${script_name}" \ - "${i}" \ - "${where_etc}" \ - "${threads}" - sleep 0.25 - # To avoid tripping any alarms, slow down the rate of job submission - - echo "" - echo "" - - (( count++ )) -done -``` - -
-Results of echo test: - -```txt -samtools sort -n -@ "4" "./files_unprocessed/bam_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam" \ - > "./files_unprocessed/bam_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.sort-n.bam" - -samtools fastq \ - -@ "4" \ - -1 "./files_unprocessed/fastq_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.1.fq.gz" \ - -2 "./files_unprocessed/fastq_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.2.fq.gz" \ - "./files_unprocessed/bam_split/EndToEnd/5781_G1_IN_merged.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.sort-n.bam" -``` -
-
-
- - -## Rough-draft: Limit number of jobs submitted to `SLURM` -```bash -#!/bin/bash -#DONTRUN - -# squeue -u "kalavatt" -list_running_IDs() { - squeue -h -u "$(whoami)" \ - | tr -s ' ' \ - | sed 's/^ //g' \ - | tr ' ' '\t' \ - | cut -f 1,5 \ - | awk -F '\t' '{ $2 = R; print }' -} - - -alias count_running="list_running_IDs | wc -l" - -jobs_tally="$(count_running)" # echo "${jobs_tally}" -jobs_max=12 -while [[ "$(count_running)" -ge "${jobs_max}" ]]; do - sleep 5 - printf %s "." -done - - -# Scraps, etc. --------------------------------------------------------------- -# while [[ "${jobs_tally}" -ge "${jobs_max}" ]]; do -# sleep 5 -# printf %s "." -# jobs_tally="$(count_running)" -# done - -# if [[ "$(count_running)" -ge "${jobs_max}" ]]; then -# echo TRUE -# else -# echo FALSE -# fi - -# max_jobs=1 -# while read -r job; do -# grid_jobs_tally="$(list_jobs | grep -c "${job_prefix}")" -# -# while [[ "${grid_jobs_tally}" -ge "${max_jobs}" ]]; do -# sleep 5 -# printf "." -# grid_jobs_tally="$(list_jobs | grep -c "${job_prefix}")" -# done -# -# qsub "${job}" -# -# printf "Job submission time: %s\n\n" "$(date)" -# sleep 1 -# done <(find ./path/to/files -name "${job_prefix}*" -type f | sort -V) - -# checkJobs() { qstat -u "kga0" -xml | grep JB_name | sed 's###g'; } -``` - -
-Snippets - -```txt -#!/bin/bash -#DONTRUN #CONTINUE - -
-Sample -
-``` -
diff --git a/results/2022-1201/work_make-presentation-etc.md b/results/2022-1201/work_make-presentation-etc.md deleted file mode 100644 index 415ebc7..0000000 --- a/results/2022-1201/work_make-presentation-etc.md +++ /dev/null @@ -1,706 +0,0 @@ - -`#work_make-presentation-etc.md` -
-
- -
-Table of contents - - -1. [Scraps to be incorporated](#scraps-to-be-incorporated) -1. [Documentation `#INPROGRESS`](#documentation-inprogress) - 1. [The *"comprehensive transcriptome database"* strategy](#the-comprehensive-transcriptome-database-strategy) - 1. [Pros and cons of the `Trinity` GG and GF approaches](#pros-and-cons-of-the-trinity-gg-and-gf-approaches) - 1. [Input for the *"comprehensive transcriptome database"* strategy](#input-for-the-comprehensive-transcriptome-database-strategy) - 1. [How I called the different programs, including rationale and other details](#how-i-called-the-different-programs-including-rationale-and-other-details) - 1. [★ `PASA`](#%E2%98%85-pasa) - 1. [Details](#details) - 1. [First, here's a breakdown of the *"kinds"* of input](#first-heres-a-breakdown-of-the-kinds-of-input) - 1. [And here's a breakdown of the input with respect to both *"kinds"* and *"combinations"*](#and-heres-a-breakdown-of-the-input-with-respect-to-both-kinds-and-combinations) - 1. [The how](#the-how) - 1. [`--gene_overlap` method](#--gene_overlap-method) - 1. [`--stringent_alignment_overlap` method](#--stringent_alignment_overlap-method) - 1. [Default method \(neither `--gene_overlap` nor `--stringent_alignment_overlap`\)](#default-method-neither---gene_overlap-nor---stringent_alignment_overlap) - 1. [The meaning of the parameters](#the-meaning-of-the-parameters) - 1. [★ `Trinity`](#%E2%98%85-trinity) - 1. [Details](#details-1) - 1. [The how](#the-how-1) - 1. [GG](#gg) - 1. [GF](#gf) - 1. [★ `STAR`](#%E2%98%85-star) - 1. [★ `rcorrector`](#%E2%98%85-rcorrector) - 1. [★ `trim_galore`](#%E2%98%85-trim_galore) -1. [`#TODOs`](#todos) - 1. [Building an understanding/explanation for important parts of the `PASA` pipeline](#building-an-understandingexplanation-for-important-parts-of-the-pasa-pipeline) -1. [Presentation outline](#presentation-outline) - 1. [Slide 1](#slide-1) - 1. [Head](#head) - 1. [Body: Bullets](#body-bullets) - 1. [Tail](#tail) - 1. [Slide 2](#slide-2) - 1. [Head](#head-1) - 1. [Body: Bullets](#body-bullets-1) - 1. [Tail](#tail-1) - 1. [Slide 3](#slide-3) - 1. [Head](#head-2) - 1. [Body](#body) - 1. [Left side: Bullets](#left-side-bullets) - 1. [Abbreviated bullets](#abbreviated-bullets) - 1. [Right side: Raghavan et al., Figure 1](#right-side-raghavan-et-al-figure-1) - 1. [Slide 4](#slide-4) - 1. [Head](#head-3) - 1. [Left side: Bullets](#left-side-bullets-1) - 1. [Tail](#tail-2) - 1. [Slide 4](#slide-4-1) - 1. [Background \(not in the main slide\)](#background-not-in-the-main-slide) - 1. [Maybe](#maybe) - 1. [Citations](#citations) - 1. [Snippets](#snippets) - - -
-
- - - -## Scraps to be incorporated -
-Click to view: Scraps to be incorporated - -If a genome sequence is available, `Trinity` offers a method in which... -1. reads are aligned to the genome, partitioning mapped reads by locus -2. the alignments undergo local *de novo* transcriptome assembly at each locus - -Thus, the genome serves as "a substrate" for grouping overlapping reads into clusters that will be separately fed into `Trinity` for *de novo* transcriptome assembly. This differs from other genome-guided approaches such as those implemented in `cufflinks` and `stringtie`, where aligned reads are stitched into transcript structures, and where transcript sequences are reconstructed based on the reference genome sequence. In the `Trinity` __GG__ approach, transcripts are reconstructed based on the actual read sequences. - -Why do this? You may have a reference genome, but your sample likely comes from an organism with a genome that isn't an exact match to the reference genome. Genome-guided *de novo* assembly should capture the sequence variations contained in your RNA-Seq sample in the form of the transcripts that are *de novo* reconstructed. In comparison to genome-free *de novo* assembly, it can also help in cases where you have paralogs or other genes with shared sequences, since the genome is used to partition the reads according to locus prior to doing any *de novo* assembly. If you have a highly fragmented draft genome, then you are likely better off performing a genome-free *de novo* transcriptome assembly. -
-
-
- - -## Documentation `#INPROGRESS` -I used [`PASA` (Program to Assemble Spliced Alignments)](https://github.com/PASApipeline/PASApipeline/wiki) to build our draft transcriptome assemblies following the *"comprehensive transcriptome database"* strategy documented [here](https://github.com/PASApipeline/PASApipeline/wiki/PASA_comprehensive_db). - - -### The *"comprehensive transcriptome database"* strategy -
-Click to view: The "comprehensive transcriptome database" strategy - -The *"comprehensive transcriptome database"* strategy attempts to overcome limitations from using either the `Trinity` genome-guided (__GG__) or `Trinity` genome-free (__GF__) assembly approaches alone, yielding what is likely a more comprehensive representation of the transcriptome. - - -#### Pros and cons of the `Trinity` GG and GF approaches -1. For example, some pros and cons of using the `Trinity` __GG__ approach alone: - + Cons - * an inability to capture transcripts associated with non-annotated features in the reference genome - * an inability to capture transcripts that align partially or otherwise poorly to the reference genome - * an inability to capture any other transcripts that aren't properly represented by the reference genome - * unmapped reads are not included in draft transcriptome assemblies - + Pros - * reads are grouped based on - - first, alignment to the reference genome - - second, k-mer composition among reads in the grouping that results from alignment -
-
- -2. And some pros and cons of using the `Trinity` __GF__ approach alone: - + Cons - * reads are grouped based on k-mer composition alone - - *(this is a "con" in certain contexts and a "pro" in others)* - - for example, it is a "con" if there are many paralogs (or other features that share sequence similarity) in the organism's genome - - "The k-mer composition suggests a given read could be associated with many different groups, so which group should it go into? " - + Pros - * reads are grouped based on k-mer composition alone - - *(this is a "con" in certain contexts and a "pro" in others)* - - this a "pro" in cases where the quality of the reference genome is poor - * an ability to capture transcripts associated with non-annotated features in a reference genome - * an ability to capture transcripts that would align partially to a reference genome - * an ability to capture any other transcripts that aren't properly represented by the reference genome - * reads that would be unmapped following alignment are included in draft transcriptome assemblies - - -#### Input for the *"comprehensive transcriptome database"* strategy -In `PASA`'s *"comprehensive transcriptome database"* strategy, we use as input the results from calling `Trinity` twice: -1. We input a `.fasta` file from running `Trinity` in __GF__ mode - + `#TODO #INPROGRESS` Summarize what this is, how it works - + called with `--jaccard_clip` - + input is `.fastq` files processed as described below and filtered to contain only alignments to *S. cerevisiae* -2. We input a `.fasta` file that results from running `Trinity` in __GG__ mode - + `#TODO #INPROGRESS` Summarize what this is, how it works - + called with `--jaccard_clip` - + input is `.bam` files processed as described below and filtered to contain only alignments to *S. cerevisiae* -
-
- - -### How I called the different programs, including rationale and other details -- Experiment begun `2022-1201`; rough draft work begun `2022-1101` -- Automated pipeline `#INPROGRESS` - -#### ★ `PASA` -
-Click to view: PASA - -`#DEKHO` - -##### Details -- I called `PASA`___‡___ using __three__ *"kinds"* of input in __three__ *"combinations"* - + That resulted in total of __nine__ different draft transcriptome assemblies to assess -- ___‡___I called `PASA` in two different ways: - + Once without the parameter `--gene_overlap` and once with the parameter `#TODO` Provide the rationale and invocations - + So, actually, there are __18__ (9 × 2) different draft transcriptome assemblies to assess - - -###### First, here's a breakdown of the *"kinds"* of input -- Three kinds using __"unprocessed"__ `.bam`s and .`fastq`s - + adapter- and quality-trimmed with `trim_galore`: `FALSE` - + k-mer-corrected with `rcorrector`: `FALSE` - + aligned with `STAR` in `Local` mode (which allows "soft clipping") -- Three kinds using __"processed"__ `.bam`s and .`fastq`s - + adapter- and quality-trimmed with `trim_galore`: `TRUE` `#TODO` Provide the rationale and invocation - + k-mer-corrected with `rcorrector`: `FALSE` - + aligned with `STAR` in `EndToEnd` mode (which *doesn't* allow "soft clipping") -- Three kinds using __"processed (full)"__ `.bam`s and .`fastq`s - + adapter- and quality-trimmed with `trim_galore`: `TRUE` `#TODO` Provide the rationale and invocation - + k-mer-corrected with `rcorrector`: `TRUE` `#TODO` Provide the full invocation - + aligned with `STAR` in `EndToEnd` mode (which *doesn't* allow "soft clipping") - - -###### And here's a breakdown of the input with respect to both *"kinds"* and *"combinations"* -- __"unprocessed"__ - + `PASA` from `Trinity` __GF__ + `Trinity` __GG__ multi-hit-mode 1 *(only __one__ alignment is allowed per read)* - + `PASA` from `Trinity` __GF__ + `Trinity` __GG__ multi-hit-mode 10 *(up to __10__ alignments are allowed per read)* - + `PASA` from `Trinity` __GF__ + `Trinity` __GG__ multi-hit-mode 100 *(up to __100__ alignments are allowed per read)* -- __"processed"__ - + `PASA` from `Trinity` __GF__ + `Trinity` __GG__ multi-hit-mode 1 - + `PASA` from `Trinity` __GF__ + `Trinity` __GG__ multi-hit-mode 10 - + `PASA` from `Trinity` __GF__ + `Trinity` __GG__ multi-hit-mode 100 -- __"processed (full)"__ - + `PASA` from `Trinity` __GF__ + `Trinity` __GG__ multi-hit-mode 1 - + `PASA` from `Trinity` __GF__ + `Trinity` __GG__ multi-hit-mode 10 - + `PASA` from `Trinity` __GF__ + `Trinity` __GG__ multi-hit-mode 100 - - -##### The how - -###### `--gene_overlap` method -
-Click to view code: The calls to Launch_PASA_pipeline.pl using the --gene_overlap method, followed by the call to build_comprehensive_transcriptome.dbi - -```bash -#!/bin/bash -#DONTRUN - -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_directory="\${1}" -str_experiment="\${2}" -str_accessions="\${3}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "\${str_directory}/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - "\${PASAHOME}/Launch_PASA_pipeline.pl" \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - -L \\ - --annots "Saccharomyces_cerevisiae.R64-1-1.108.gff3" \\ - --gene_overlap ${value} \\ - --ALIGNERS "blat,gmap,minimap2" \\ - 1> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stderr.log" >&2) - -if [[ -f "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - # cyberciti.biz/faq/linux-unix-script-check-if-file-empty-or-not/ - if [[ -s "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stderr.log" >&2) - else - echo "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf is empty" - echo "Check on things..." - fi -fi - -script -``` -
-
- - -###### `--stringent_alignment_overlap` method -
-Click to view code: The calls to Launch_PASA_pipeline.pl using the --stringent_alignment_overlap method, followed by the call to build_comprehensive_transcriptome.dbi - -```bash -#!/bin/bash -#DONTRUN - -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_directory="\${1}" -str_experiment="\${2}" -str_accessions="\${3}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "\${str_directory}/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - "\${PASAHOME}/Launch_PASA_pipeline.pl" \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - --stringent_alignment_overlap ${value} \\ - --ALIGNERS "blat,gmap,minimap2" \\ - 1> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stderr.log" >&2) - -if [[ -f "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - # cyberciti.biz/faq/linux-unix-script-check-if-file-empty-or-not/ - if [[ -s "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stderr.log" >&2) - else - echo "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf is empty" - echo "Check on things..." - fi -fi - -script -``` -
-
- - -###### Default method (neither `--gene_overlap` nor `--stringent_alignment_overlap`) - -
-Click to view code: The calls to Launch_PASA_pipeline.pl using default "overlap" settings, followed by the call to build_comprehensive_transcriptome.dbi - -```bash -#!/bin/bash -#DONTRUN - -cat << script > "./sh_err_out/${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=${threads} -#SBATCH --error=./sh_err_out/err_out/${s_name%.sh}.%J.err.txt -#SBATCH --output=./sh_err_out/err_out/${s_name%.sh}.%J.out.txt - -# ${s_name} -# KA -# $(date '+%Y-%m%d') - -str_directory="\${1}" -str_experiment="\${2}" -str_accessions="\${3}" - -ml Singularity - -export PASAHOME="/usr/local/src/PASApipeline" -echo "PASAHOME is \${PASAHOME}" -echo "" - -cd "\${str_directory}/\${str_experiment}" -echo "Working directory from which the script is called: \$(pwd)" -echo "" - -echo "All files in the working directory:" -ls -lhaFG -echo "" - -singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - "\${PASAHOME}/Launch_PASA_pipeline.pl" \\ - --CPU \${SLURM_CPUS_ON_NODE} \\ - -c "\${str_experiment}.align_assembly.config" \\ - -C \\ - -R \\ - -g "Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" \\ - -I 1002 \\ - -t "\${str_experiment}.transcripts.fasta.clean" \\ - -T \\ - -u "\${str_experiment}.transcripts.fasta" \\ - --TDN "\${str_accessions}" \\ - --transcribed_is_aligned_orient \\ - --ALIGNERS "blat,gmap,minimap2" \\ - 1> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.Launch_PASA_pipeline.stderr.log" >&2) - -if [[ -f "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - # cyberciti.biz/faq/linux-unix-script-check-if-file-empty-or-not/ - if [[ -s "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf" ]]; then - singularity run \\ - --no-home \\ - --bind "\${HOME}/genomes/sacCer3/Ensembl/108" \\ - --bind "\$(pwd)" \\ - --bind "/fh/scratch/delete30/tsukiyama_t:/loc/scratch/\${SLURM_JOB_ID}" \\ - "\${HOME}/singularity-docker-etc/PASA.sif" \\ - \${PASAHOME}/scripts/build_comprehensive_transcriptome.dbi \\ - -c "\${str_experiment}.align_assembly.config" \\ - -t "\${str_experiment}.transcripts.fasta" \\ - --prefix "\${str_experiment}.compreh_init_build" \\ - --min_per_ID 95 \\ - --min_per_aligned 30 \\ - 1> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stdout.log") \\ - 2> >(tee -a "\${str_experiment}.build_comprehensive_transcriptome.stderr.log" >&2) - else - echo "\${str_experiment}.pasa.sqlite.pasa_assemblies.gtf is empty" - echo "Check on things..." - fi -fi - -script -``` -
-
- - -###### The meaning of the parameters -`#TODO` -
-
-
- - -#### ★ `Trinity` -
-Click to view: Trinity - - -##### Details - - -##### The how - - -###### GG - - -###### GF -
-
-
- - -#### ★ `STAR` -
-Click to view: STAR - -... -
-
-
- - -#### ★ `rcorrector` -
-Click to view: rcorrector - -... -
-
-
- - -#### ★ `trim_galore` -
-Click to view: trim_galore - -... -
-
-
- - -## `#TODOs` -
-Click to view: #TODO items - - -### Building an understanding/explanation for important parts of the `PASA` pipeline -- Review what's going on with/in `Launch_PASA_pipeline.pl` -- Understand what's going on with `validate_alignments_in_db.dbi`, which is regulated by the `PASA` `*.align_assembly.config` file -```txt -#script validate_alignments_in_db.dbi -validate_alignments_in_db.dbi:--MIN_PERCENT_ALIGNED=75 -validate_alignments_in_db.dbi:--MIN_AVG_PER_ID=95 -validate_alignments_in_db.dbi:--NUM_BP_PERFECT_SPLICE_BOUNDARY=0 -``` -- Understand what's going on with `subcluster_builder.dbi`, which is also regulated by the `PASA` `*.align_assembly.config` file -```txt -#script subcluster_builder.dbi -subcluster_builder.dbi:-m=50 -``` -- Understand what's going on with the parameters in `build_comprehensive_transcriptome.dbi`, e.g., -```txt ---min_per_ID 95 ---min_per_aligned 30 -``` -
-
-
- - -## Presentation outline -*...for the presentation to be given on 2023-0111* - -### Slide 1 - -#### Head -Using quiescent yeast cells, we seek to perform a *comprehensive characterization of cryptic transcripts* - - -#### Body: Bullets -- An important, conserved feature of eukaryotic genomes is ___pervasive transcription___ -- In *S. cerevisiae*, at least 85% of the genome is transcribed in cycling cells, resulting in substantial amounts of ___noncoding transcription___ - + In close proximity to or overlapping annotated genes - + On the antisense strand -- Much of this noncoding transcription degrades on a shorter time scale than transcription detected by, e.g., RNA-seq—as such, it is termed ___cryptic transcription___ -- Subsets of cryptic transcripts have been characterized and annotated through the knockout of RNA surveillance factors and chromatin modifiers `#CITATIONS` - + When such factors are knocked out, the otherwise cryptic transcripts are stabilized `#QUESTION Do we need to mention this in the slide?` - + They're made capable of detection with standard transcription readouts—and thus capable of characterization `#QUESTION Do we need to mention this in the slide?` -- However, it is an ongoing mystery as to the functions of cryptic transcripts -- Alison and the Tsukiyama Lab have shown that quiescent cells are ___enriched for noncoding transcription in general and antisense transcripts in particular___ -- Thus, using quiescent *S. cerevisiae* as a model, Alison sought to perform a ___comprehensive characterization of cryptic transcripts___... - + Alison performed ___4tU-seq___—also known as ___"nascent RNA-seq"___ - * 4tU-seq is a variant of RNA-seq that enriches for nascent transcription - * 4tU-seq detects low abundance and labile transcripts that are not detected with standard transcription readouts (unless analyzing cells defective for RNA degradation) `#QUESTION Do we need to mention this in the slide?` - + ...with the goal of identifying and characterizing noncoding and antisense transcripts detected at the entry to quiescence - + This will be followed by experiments that infer and define the function of cryptic transcripts `#QUESTION Do we need to mention this?` - - -#### Tail -This work necessitates the creation of a new transcriptome assembly built from the 4tU-seq data—but ___why?___ And ___what will we do with it?___ -
-
- - -### Slide 2 - -#### Head -Why do we need a new transcriptome assembly, and what will we do with it? - - -#### Body: Bullets -- Even though a standard *S. cerevisiae* transcriptome assembly exists, it contains little-to-no information for our transcripts of interest, namely... - + Noncoding transcription `#NOTE May not need these bullets` - * Antisense transcripts - * Intergenic transcripts - + Alternative stop and start sites for transcripts - + `#QUESTION Anything else?` -- Using the 4tU-seq-derived transcriptome assembly, we seek to... - + Determine the numbers of antisense (AS) transcripts in quiescence-entry (Q) versus G1-arrest (G1) cells, and examine the differences in AS transcription between the two states; e.g., - * Are there changes in levels of transcription? - * Are there positional changes such as changes in start or stop sites? - * `#QUESTION Anything else?` - + Determine the numbers of intergenic transcripts in Q versus G1 cells— and examine the between-state differences as above - + Determine the extent of altered transcription start or stop sites in Q cells `#QUESTION Is this redundant with the above?` - + Find, tally, and characterize transcripts that have never been annotated -- Having recorded exact coordinates for altered and/or novel transcripts, we will use the new assembly to... - + measure differential expression in Q versus G1 cells - + evaluate chromatin structure at particular kinds of loci - + `#QUESTION Anything else?` - - -#### Tail -The 4tU-seq-derived assembly makes it possible to characterize cryptic transcription—___but what does custom transcriptome assembly entail?___ -
-
- - -### Slide 3 - -#### Head -What is it to make a custom transcriptome assembly? What is the workflow? - - -#### Body - -##### Left side: Bullets -- In transcriptome assembly, millions of "short" reads—sequences of nucleotides (e.g., CCGCGTGGAGGCAG) from transcription-specific next generation sequencing experiments—are pieced together to match or closely resemble their genomic sequences of origin: These are the ___assembled transcripts___ -- In general, reads can be assembled through either (a) reference genome-guided or (b) *de novo*—a.k.a., genome-free—approaches - + In the genome-guided approach, transcriptome assembly occurs when reads are mapped to the reference genome - * Doing so is a means to determine the gene sequences from which the reads originate - * From there, transcripts are reconstructed - + In the genome-free approach, assembly is accomplished using the information contained in the reads alone -- We perform a hybrid approach, building transcripts from both genome-guided and genome-free approaches—but before diving into that, it's important to discuss the general workflow for transcriptome assembly - - -###### Abbreviated bullets -- In transcriptome assembly, millions of "short" reads are pieced together to match or closely resemble their genomic sequences of origin: These are the assembled transcripts -- In general, reads can be assembled through either (a) reference genome-guided or (b) *de novo*—a.k.a., genome-free—approaches - + In the genome-guided approach, transcriptome assembly occurs when reads are mapped to the reference genome - + In the genome-free approach, assembly is accomplished using the information contained in the reads alone -We perform a hybrid approach—but before diving into that, it's important to discuss the general workflow for transcriptome assembly - - -##### Right side: Raghavan et al., Figure 1 - - -### Slide 4 - -#### Head -What is it to make a custom transcriptome assembly? What is the workflow? - - -###### Left side: Bullets -- (A) The sequencing data must be quality controlled -- (B) The data is then assembled to obtain the reference transcriptome; then, it’s further quality controlled to produce an artifact-free assembly -- (C, D) Read alignment and transcript abundance estimation (C) are performed both as quality control measures, and differential transcript expression levels can be estimated (D) -- (E) If the RNA-seq data are suspected to contain non-mRNA species, RNA classification can be carried out to classify and filter the data -- (E) Transcriptomic sequences can be translated into their amino acid counterparts -- (F) The nucleotide (and/or translated protein) sequences can be annotated to assign identifiers and elucidate biological roles - - -- First, the sequencing data must be quality controlled (A); this can include - + excluding reads originating from rRNAs - + removing adapter sequences - + `#TODO Add more, including rcorrector` - + \[(A) Section ‘Pre-assembly quality control and filtering’\] -- Next, the data can be assembled (here, we see an illustration for *de novo* assembly) to obtain the transcriptome - + they must then be quality controlled again to produce a final artifact-free assembly (B) - + \[(B), Sections ‘De novo transcriptome assembly’, ‘Post-assembly quality control’, ‘Alignment and abundance estimation’, and ‘Assembly thinning and redundancy reduction’\] -- Read alignment and transcript abundance estimation (C) are performed both as quality control measures and to estimate transcript expression levels for differential expression analysis (D) - + \[(C), Section ‘Alignment and abundance estimation’\] - + \[(D), Section ‘Differential expression analysis’\] -- If the RNA-seq data are suspected to contain non-mRNA species, RNA classification can be carried out to classify and filter the data (E) - + \[(E), Section ‘RNA classification’\] -- Protein sequences are useful in many contexts (including annotation), and therefore, the transcriptomic sequences can be translated into their amino acid counterparts (E) - + \[(E), Section ‘Sequence translation’\] -- Finally, the nucleotide (and/or translated protein) sequences can be annotated to assign human-readable identifiers to them, and elucidate their biological roles (F) - + \[(F), Section ‘Transcriptome functional annotation’)\] - - -#### Tail -To be determined - - -### Slide 4 - - - -#### Background (not in the main slide) -- The "short" reads are typically 50 to 250 bp in length - - -### Maybe -- In __Slide 1__, below the bullet for *"Using 4tU-seq data, we seek to perform a..."* - + We also seek to analyze noncoding transcription when the Nrd1-Nab3-Sen1 (NNS) complex is disrupted `#QUESTION Do we need to mention this?` -- Depending on the above answer, some pieces I may need to fit into __Slide 1__ - + `#TODO` Want to ask and answer, *"Why do we need a new transcriptome assembly?"* - + `#TODO` Brief rationale for disruption of NNS complex and analysis of transcription afterwards - * NNS promotes transcription termination (or, more specifically, promotes); thus, it is expected that antisense transcription is increased in this model - * `#QUESTIONS` Are we examining transcription in the NNS-KO model at Q entry, i.e., is this Q entry NNS-WT vs NNS-KO? And/or are G1-arrest or cycling cells analyzed in this experiment? - - -### Citations -- Slide 1 - + Tudek A, Candelli T, Libri D, "Non-coding transcription by RNA polymerase II in yeast: Hasard or nécessité?", *Biochimie.* 2015 - + van Dijk EL, Chen CL, d'Aubenton-Carafa Y, Gourvennec S, Kwapisz M, Roche V, et al., "XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast", *Nature* 2011 - + `#QUESTION` Others? - + Greenlaw et al., *in preparation* - - -### Snippets -- From Alison: "Eg. My first annotation attempt allowed me to show that the 3’ NDR at convergent genes that fail to terminate is shallower than convergent genes that terminate appropriately." diff --git a/results/2022-1201/work_make-symlinks.md b/results/2022-1201/work_make-symlinks.md deleted file mode 100644 index 40088b1..0000000 --- a/results/2022-1201/work_make-symlinks.md +++ /dev/null @@ -1,4079 +0,0 @@ - -`#work_make-symlinks-etc.md` -
-
- -
-Table of contents - - -1. [Symlinking `.bam`s for IGV assessments, etc., 2022-1212](#symlinking-bams-for-igv-assessments-etc-2022-1212) - 1. [The particular `.bam`s and their details](#the-particular-bams-and-their-details) - 1. ["Unprocessed" `.bam`s](#unprocessed-bams) - 1. ["Processed" `.bam`s](#processed-bams) - 1. ["Processed \(full\)" `.bam`s](#processed-full-bams) - 1. [Creating the symbolic links](#creating-the-symbolic-links) -1. [Convert the experiment `.bam`s into `.bw`s, 2022-1215](#convert-the-experiment-bams-into-bws-2022-1215) - 1. [Grab a node, get to the right directory, etc.](#grab-a-node-get-to-the-right-directory-etc) - 1. [Assess things](#assess-things) - 1. [Fix the symlinks to the `.bam`s linked on 2022-1212](#fix-the-symlinks-to-the-bams-linked-on-2022-1212) - 1. ["preprocessed" `.bam`s](#preprocessed-bams) - 1. ["unprocessed" `.bam`s](#unprocessed-bams-1) - 1. ["processed \(full\)" .`bam`s](#processed-full-bams-1) - 1. [Now, edit the `.bam`-to-`.bw` script and make `.bw`s](#now-edit-the-bam-to-bw-script-and-make-bws) - 1. [Update the script](#update-the-script) - 1. [Scratch: `bamcoverage_strandselect.sh`](#scratch-bamcoverage_strandselectsh) - 1. [Before \(AG\)](#before-ag) - 1. [After \(KA\)](#after-ka) - 1. [Notes about the previous script for teaching purposes](#notes-about-the-previous-script-for-teaching-purposes) - 1. [Make `submit_bamCoverage.sh`](#make-submit_bamcoveragesh) - 1. [Get the `.bam`s of interest into an array \(or glob\) to be looped over for job submissions](#get-the-bams-of-interest-into-an-array-or-glob-to-be-looped-over-for-job-submissions) -1. [Symlinking more `.bam`s and creating more `.bw`s, 2022-1216](#symlinking-more-bams-and-creating-more-bws-2022-1216) - 1. [Checking on what `.bam`s have been symlinked](#checking-on-what-bams-have-been-symlinked) - 1. [Reorganize the `.bw`s](#reorganize-the-bws) - 1. [Create `--ignoreDuplicates` `.bw`s for `multi-hit-mode 100`, `1000`](#create---ignoreduplicates-bws-for-multi-hit-mode-100-1000) - 1. [Create non-`--ignoreDuplicates` `.bw`s for `multi-hit-mode` `1`, `10`, `100`, `1000`](#create-non---ignoreduplicates-bws-for-multi-hit-mode-1-10-100-1000) - 1. [Make the submission script](#make-the-submission-script) -1. [Symlink to merged `.bam`s and create `.bw`s for them, 2022-1216](#symlink-to-merged-bams-and-create-bws-for-them-2022-1216) -1. [Symlinking `.gff3`s for assessment, 2022-1214-1216](#symlinking-gff3s-for-assessment-2022-1214-1216) - 1. [The particular `.gff3`s and their details](#the-particular-gff3s-and-their-details) - 1. [Get the absolute paths to the relevant `files_PAS*` `.gff3`s](#get-the-absolute-paths-to-the-relevant-files_pas-gff3s) - 1. [The actual symlinking](#the-actual-symlinking) - 1. [Clean up the previous symlinks, which don't work for Alison](#clean-up-the-previous-symlinks-which-dont-work-for-alison) - 1. [Create symlinks that will work for Alison/other users](#create-symlinks-that-will-work-for-alisonother-users) -1. [Questions about `bamCoverage`](#questions-about-bamcoverage) - 1. [On `--filterRNAstrand`](#on---filterrnastrand) -1. [Linking and/or symlinking to data galore, 2022-0103-0105](#linking-andor-symlinking-to-data-galore-2022-0103-0105) - 1. [The plan of attack](#the-plan-of-attack) - 1. [Replace string "`trim-rcor`" with "`rcor`" in appropriate directories](#replace-string-trim-rcor-with-rcor-in-appropriate-directories) - 1. [Grab a node, get to the work directory, and load the proper environment](#grab-a-node-get-to-the-work-directory-and-load-the-proper-environment) - 1. [Rename incorrectly labeled `*trim-rcor*` files to `*rcor*`](#rename-incorrectly-labeled-trim-rcor-files-to-rcor) - 1. [Create arrays of specific, approrpiate files for renaming](#create-arrays-of-specific-approrpiate-files-for-renaming) - 1. [Use the arrays to rename appropriate files](#use-the-arrays-to-rename-appropriate-files) - 1. [Copy/rename \(and rename some more\) for use by Alison](#copyrename-and-rename-some-more-for-use-by-alison) - 1. [Get files of interest into arrays](#get-files-of-interest-into-arrays) - 1. [Copy/rename files of interest into the "assessment" directory](#copyrename-files-of-interest-into-the-assessment-directory) - 1. [In the "assignment" directory, do additional renaming work](#in-the-assignment-directory-do-additional-renaming-work) - 1. [Rename "`trim-rcor`" strings to "`rcor`" in "`./files_Trinity*`", "`./files_processed-rcor-only`"](#rename-trim-rcor-strings-to-rcor-in-files_trinity-files_processed-rcor-only) - 1. [Get directories of interest into arrays, then rename them as appropriate](#get-directories-of-interest-into-arrays-then-rename-them-as-appropriate) - 1. [Work with "`./files_Trinity*`"](#work-with-files_trinity) - 1. [Work with "`./files_processed-rcor-only`"](#work-with-files_processed-rcor-only) - 1. [Notes](#notes) - 1. [Code to accomplish the above](#code-to-accomplish-the-above) - 1. [Symlink to the individual and merged `.bam`s, renaming them for easy use by Alison](#symlink-to-the-individual-and-merged-bams-renaming-them-for-easy-use-by-alison) - 1. [Create an array of appropriate `.bam`s](#create-an-array-of-appropriate-bams) - 1. [Clean up/set up '`awd`', then symlink the `.bam`s](#clean-upset-up-awd-then-symlink-the-bams) - 1. [Create an array of appropriate `.bai`s and symlink them](#create-an-array-of-appropriate-bais-and-symlink-them) - 1. [Generate `.bw`s for the `.bam`s](#generate-bws-for-the-bams) - - -
-
- - -## Symlinking `.bam`s for IGV assessments, etc., 2022-1212 - -### The particular `.bam`s and their details - -#### "Unprocessed" `.bam`s -- reads adapter and quality trimmed by `trim_galore`: `FALSE` -- reads k-mer-corrected by `rcorrector`: `FALSE` -- `STAR` alignment type: "`Local`" - -
-Click to see the files - -```txt -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -``` -
- - -#### "Processed" `.bam`s -- reads adapter and quality trimmed by `trim_galore`: TRUE -- reads k-mer-corrected by `rcorrector`: FALSE -- `STAR` alignment type: "`EndToEnd`" - -
-Click to see the files - -```txt -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -``` -
- - -#### "Processed (full)" `.bam`s -- reads adapter and quality trimmed by trim_galore: TRUE -- reads k-mer-corrected by rcorrector: TRUE -- STAR alignment type: "EndToEnd" - -
-Click to see the files - -```txt -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -``` -
- - -### Creating the symbolic links -
-Click to view code: Go to work directory, create symbolic links for files of interest - -```bash -#!/bin/bash - -cd "/home/kalavatt/tsukiyamalab/alisong" || echo "cd'ing failed" -mkdir -p Kris_bams/{unprocessed,preprocessed,preprocessed-full} - -cd "Kris_bams" || echo "cd'ing failed; check on this" - -p_u="/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local" -p_p="/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd" -p_pf="/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd" - -cd unprocessed -for i in "${p_u}/"*".sc_all.bam"; do - # echo "${i}" "$(basename "${i}")" - ln -s "${i}" "$(basename "${i}")" #YAAD ln -s source_file target_file -done - -cd ../preprocessed -for i in "${p_p}/"*".sc_all.bam"; do - # echo "${i}" "$(basename "${i}")" - ln -s "${i}" "$(basename "${i}")" -done -rename 's/un_multi-hit-mode/multi-hit-mode/g' *.bam - -cd ../preprocessed-full -for i in "${p_pf}/"*".sc_all.bam"; do - # echo "${i}" "$(basename "${i}")" - ln -s "${i}" "$(basename "${i}")" -done - -cd .. -.,s -``` -
-
- -
-Printed to terminal: `.,s` in `~/tsukiyamalab/alisong/Kris_bams` - -```txt -./preprocessed: -total 972K -drwxrws--- 2 kalavatt 3.3K Dec 12 14:58 ./ -drwxrws--- 5 kalavatt 94 Dec 12 14:51 ../ -lrwxrwxrwx 1 kalavatt 218 Dec 12 14:57 5781_G1_IN_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5781_G1_IN_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5781_G1_IN_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5781_G1_IN_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 218 Dec 12 14:57 5781_G1_IP_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5781_G1_IP_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5781_G1_IP_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5781_G1_IP_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5781_Q_IN_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5781_Q_IN_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5781_Q_IN_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 214 Dec 12 14:57 5781_Q_IN_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5781_Q_IP_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5781_Q_IP_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 214 Dec 12 14:57 5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 218 Dec 12 14:57 5782_G1_IN_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5782_G1_IN_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5782_G1_IN_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5782_G1_IN_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 218 Dec 12 14:57 5782_G1_IP_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5782_G1_IP_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5782_G1_IP_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5782_G1_IP_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5782_Q_IN_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5782_Q_IN_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5782_Q_IN_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 214 Dec 12 14:57 5782_Q_IN_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5782_Q_IP_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5782_Q_IP_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5782_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 214 Dec 12 14:57 5782_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -./preprocessed-full: -total 1002K -drwxrws--- 2 kalavatt 3.5K Dec 12 14:59 ./ -drwxrws--- 5 kalavatt 94 Dec 12 14:51 ../ -lrwxrwxrwx 1 kalavatt 234 Dec 12 14:59 5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 233 Dec 12 14:59 5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 232 Dec 12 14:59 5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 231 Dec 12 14:59 5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 234 Dec 12 14:59 5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 233 Dec 12 14:59 5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 232 Dec 12 14:59 5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 231 Dec 12 14:59 5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 233 Dec 12 14:59 5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 232 Dec 12 14:59 5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 231 Dec 12 14:59 5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 230 Dec 12 14:59 5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 233 Dec 12 14:59 5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 232 Dec 12 14:59 5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 231 Dec 12 14:59 5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 230 Dec 12 14:59 5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 234 Dec 12 14:59 5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 233 Dec 12 14:59 5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 232 Dec 12 14:59 5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 231 Dec 12 14:59 5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 234 Dec 12 14:59 5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 233 Dec 12 14:59 5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 232 Dec 12 14:59 5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 231 Dec 12 14:59 5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 233 Dec 12 14:59 5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 232 Dec 12 14:59 5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 231 Dec 12 14:59 5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 230 Dec 12 14:59 5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 233 Dec 12 14:59 5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 232 Dec 12 14:59 5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 231 Dec 12 14:59 5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 230 Dec 12 14:59 5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -./unprocessed: -total 948K -drwxrws--- 2 kalavatt 3.1K Dec 12 14:56 ./ -drwxrws--- 5 kalavatt 94 Dec 12 14:51 ../ -lrwxrwxrwx 1 kalavatt 204 Dec 12 14:56 5781_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 12 14:56 5781_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 202 Dec 12 14:56 5781_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 201 Dec 12 14:56 5781_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 204 Dec 12 14:56 5781_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 12 14:56 5781_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 202 Dec 12 14:56 5781_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 201 Dec 12 14:56 5781_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 12 14:56 5781_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 202 Dec 12 14:56 5781_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 201 Dec 12 14:56 5781_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 200 Dec 12 14:56 5781_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 12 14:56 5781_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 202 Dec 12 14:56 5781_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 201 Dec 12 14:56 5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 200 Dec 12 14:56 5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 204 Dec 12 14:56 5782_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 12 14:56 5782_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 202 Dec 12 14:56 5782_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 201 Dec 12 14:56 5782_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 204 Dec 12 14:56 5782_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 12 14:56 5782_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 202 Dec 12 14:56 5782_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 201 Dec 12 14:56 5782_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 12 14:56 5782_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 202 Dec 12 14:56 5782_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 201 Dec 12 14:56 5782_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 200 Dec 12 14:56 5782_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 12 14:56 5782_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 202 Dec 12 14:56 5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 201 Dec 12 14:56 5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 200 Dec 12 14:56 5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -``` -
-
-
- - -## Convert the experiment `.bam`s into `.bw`s, 2022-1215 -*Building off of work started by Alison* - - -### Grab a node, get to the right directory, etc. -
-Click to view code: Grab a node, get to the right directory, symlink 'assess_transcriptome_assemblies/', load conda/mamba environment - -```bash -#!/bin/bash -#DONTRUN - -pwd -# /home/kalavatt - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 and corresponding defaults - -# Rename the directory for analyses in which we assess assemblies with IGV -cd "${HOME}/tsukiyamalab/alisong" || \ - echo "cd'ing failed; check on this" - -mv Kris/ assess_transcriptome_assemblies/ -# renamed 'Kris/' -> 'assess_transcriptome_assemblies/' - -# Create a symlink to the directory for assessing assemblies with IGV -cd ../.. - -ln -s \ - "${HOME}/tsukiyamalab/alisong/assess_transcriptome_assemblies" \ - "assess_transcriptome_assemblies" - -., "assess_transcriptome_assemblies" -# lrwxrwxrwx 1 kalavatt 67 Dec 15 09:27 assess_transcriptome_assemblies -> /home/kalavatt/tsukiyamalab/alisong/assess_transcriptome_assemblies/ - -cd "assess_transcriptome_assemblies" && ., -# /home/kalavatt/assess_transcriptome_assemblies -# total 259K -# drwxrws--- 5 kalavatt 149 Dec 14 14:38 ./ -# drwxrws--- 49 agreenla 3.2K Dec 15 09:21 ../ -# drwxrws--- 6 kalavatt 180 Dec 14 15:05 bams_2022-1212/ -# drwxrws--- 4 kalavatt 83 Dec 14 15:05 gtfs_2022-1214/ -# drwxrws--- 2 agreenla 1.7K Dec 12 14:26 IGV_sharing/ - -# Load Trinity environment -Trinity_env -``` -
-
- - -### Assess things -
-Click to view code: Go to 'bams_2022-1212/', run `.,`, etc., run `head -1000 slurm-5685397.out` - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -., bams_2022-1212/ -# total 235K -# drwxrws--- 6 kalavatt 124 Dec 15 09:41 ./ -# drwxrws--- 5 kalavatt 93 Dec 15 09:40 ../ -# drwxrws--- 3 agreenla 523 Dec 15 09:41 bigwig_test1/ -# drwxrws--- 2 kalavatt 3.3K Dec 12 14:58 preprocessed/ -# drwxrws--- 2 kalavatt 3.5K Dec 12 14:59 preprocessed-full/ -# drwxrws--- 2 kalavatt 3.1K Dec 12 14:56 unprocessed/ - -cd bams_2022-1212/bigwig_test1/ && ., -# drwxrws--- 3 agreenla 523 Dec 15 09:41 ./ -# drwxrws--- 6 kalavatt 124 Dec 15 09:41 ../ -# lrwxrwxrwx 1 agreenla 154 Dec 14 15:14 5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.bam -> /home/agreenla/tsukiyamalab/alisong/Kris/bams_2022-1212/preprocessed/5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -# lrwxrwxrwx 1 agreenla 153 Dec 14 15:14 5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.bam -> /home/agreenla/tsukiyamalab/alisong/Kris/bams_2022-1212/preprocessed/5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -# lrwxrwxrwx 1 agreenla 164 Dec 14 15:18 5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.bam -> /home/agreenla/tsukiyamalab/alisong/Kris/bams_2022-1212/preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -# lrwxrwxrwx 1 agreenla 163 Dec 14 15:17 5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.bam -> /home/agreenla/tsukiyamalab/alisong/Kris/bams_2022-1212/preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -# lrwxrwxrwx 1 agreenla 148 Dec 14 15:31 5781_Q_IP_merged.un_multi-hit-mode_10_Local.bam -> /home/agreenla/tsukiyamalab/alisong/Kris/bams_2022-1212/unprocessed/5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -# lrwxrwxrwx 1 agreenla 147 Dec 14 15:31 5781_Q_IP_merged.un_multi-hit-mode_1_Local.bam -> /home/agreenla/tsukiyamalab/alisong/Kris/bams_2022-1212/unprocessed/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 agreenla 639 Dec 14 15:38 bamcoverage_strandselect.sh -# drwxrws--- 2 agreenla 0 Dec 14 15:39 bigwigs1/ -# -rw-rw---- 1 agreenla 4.8K Dec 14 15:39 slurm-5685397.out - -head -1000 slurm-5685397.out -``` -
-
- -
-Printed to terminal: `head -1000 slurm-5685397.out` - -```txt -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.bam" : Permission denied -The file '5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.un_multi-hit-mode_10_Local.bam" : Permission denied -The file '5781_Q_IP_merged.un_multi-hit-mode_10_Local.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.un_multi-hit-mode_10_Local.bam" : Permission denied -The file '5781_Q_IP_merged.un_multi-hit-mode_10_Local.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.un_multi-hit-mode_10_Local.bam" : Permission denied -The file '5781_Q_IP_merged.un_multi-hit-mode_10_Local.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.un_multi-hit-mode_10_Local.bam" : Permission denied -The file '5781_Q_IP_merged.un_multi-hit-mode_10_Local.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.un_multi-hit-mode_1_Local.bam" : Permission denied -The file '5781_Q_IP_merged.un_multi-hit-mode_1_Local.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.un_multi-hit-mode_1_Local.bam" : Permission denied -The file '5781_Q_IP_merged.un_multi-hit-mode_1_Local.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.un_multi-hit-mode_1_Local.bam" : Permission denied -The file '5781_Q_IP_merged.un_multi-hit-mode_1_Local.bam' does not exist -[E::hts_open_format] Failed to open file "5781_Q_IP_merged.un_multi-hit-mode_1_Local.bam" : Permission denied -The file '5781_Q_IP_merged.un_multi-hit-mode_1_Local.bam' does not exist -mv: cannot stat '*.bw': No such file or directory -/var/tmp/slurmd/job5685397/slurm_script: line 26: syntax error near unexpected token `done' -/var/tmp/slurmd/job5685397/slurm_script: line 26: `done' -``` -
-
- -
-Click to view code and results printed to terminal: `., ../preprocessed` - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -., ../preprocessed -``` - -```txt -total 972K -drwxrws--- 2 kalavatt 3.3K Dec 12 14:58 ./ -drwxrws--- 6 kalavatt 124 Dec 15 09:41 ../ -lrwxrwxrwx 1 kalavatt 218 Dec 12 14:57 5781_G1_IN_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5781_G1_IN_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5781_G1_IN_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5781_G1_IN_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 218 Dec 12 14:57 5781_G1_IP_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5781_G1_IP_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5781_G1_IP_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5781_G1_IP_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5781_Q_IN_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5781_Q_IN_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5781_Q_IN_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 214 Dec 12 14:57 5781_Q_IN_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5781_Q_IP_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5781_Q_IP_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 214 Dec 12 14:57 5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 218 Dec 12 14:57 5782_G1_IN_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5782_G1_IN_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5782_G1_IN_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5782_G1_IN_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 218 Dec 12 14:57 5782_G1_IP_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5782_G1_IP_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5782_G1_IP_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5782_G1_IP_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5782_Q_IN_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5782_Q_IN_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5782_Q_IN_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 214 Dec 12 14:57 5782_Q_IN_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 217 Dec 12 14:57 5782_Q_IP_merged.trim.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 216 Dec 12 14:57 5782_Q_IP_merged.trim.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 215 Dec 12 14:57 5782_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 214 Dec 12 14:57 5782_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -``` -
-
- -- `#ERROR` The problem is that the symlink is pointing to my home directory, which does not exist on Alison's (or anyone else's) system... -- Let's see how we can address this... - - -### Fix the symlinks to the `.bam`s linked on 2022-1212 - -#### "preprocessed" `.bam`s -~~`#TODO` Fix things when `samtools split`, `samtools index`, and `samtools sort -n` are completed~~ *Done.* -
-Go to bams_2022-1212/preprocessed, unlink the unusable symlinks (fr/absolute paths), create usable symlinks (fr/relative paths), run `.,` - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd ../preprocessed - -for i in *.bam *.bai; do unlink "${i}"; done -., -# total 72K -# drwxrws--- 2 kalavatt 0 Dec 15 09:51 ./ -# drwxrws--- 6 kalavatt 124 Dec 15 09:41 ../ - -pwd -# /home/kalavatt/assess_transcriptome_assemblies/bams_2022-1212/preprocessed - -cd ../../.. -# /home/kalavatt - -cd tsukiyamalab/alisong/assess_transcriptome_assemblies -# /home/kalavatt/tsukiyamalab/alisong/assess_transcriptome_assemblies - -cd bams_2022-1212/preprocessed -# /home/kalavatt/tsukiyamalab/alisong/assess_transcriptome_assemblies/bams_2022-1212/preprocessed - -# ., ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd -path_prepro="../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd" -# echo "${path_prepro}" -# ., "${path_prepro}" - -for i in "${path_prepro}/"*".sc_all.ba"*; do - # ., "${i}" - # echo "${i}" - # echo "ln -s ${i}" "$(basename "${i}")" - # echo "" - - # unlink "${i}" - ln -s "${i}" "$(basename "${i}")" -done - -., -``` -
-
- -
-Printed to terminal: `.,` - -```txt -total 2.0M -drwxrws--- 2 kalavatt 6.9K Dec 15 13:38 ./ -drwxrws--- 6 kalavatt 124 Dec 15 13:15 ../ -lrwxrwxrwx 1 kalavatt 202 Dec 15 13:38 5781_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 206 Dec 15 13:38 5781_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 201 Dec 15 13:38 5781_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 205 Dec 15 13:38 5781_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 200 Dec 15 13:38 5781_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 204 Dec 15 13:38 5781_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 199 Dec 15 13:38 5781_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 15 13:38 5781_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 202 Dec 15 13:38 5781_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 206 Dec 15 13:38 5781_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 201 Dec 15 13:38 5781_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 205 Dec 15 13:38 5781_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 200 Dec 15 13:38 5781_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 204 Dec 15 13:38 5781_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 199 Dec 15 13:38 5781_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 15 13:38 5781_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 201 Dec 15 13:38 5781_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 205 Dec 15 13:38 5781_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 200 Dec 15 13:38 5781_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 204 Dec 15 13:38 5781_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 199 Dec 15 13:38 5781_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 15 13:38 5781_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 198 Dec 15 13:38 5781_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 202 Dec 15 13:38 5781_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 201 Dec 15 13:38 5781_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 205 Dec 15 13:38 5781_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 200 Dec 15 13:38 5781_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 204 Dec 15 13:38 5781_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 199 Dec 15 13:38 5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 15 13:38 5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 198 Dec 15 13:38 5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 202 Dec 15 13:38 5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 202 Dec 15 13:38 5782_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 206 Dec 15 13:38 5782_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 201 Dec 15 13:38 5782_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 205 Dec 15 13:38 5782_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 200 Dec 15 13:38 5782_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 204 Dec 15 13:38 5782_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 199 Dec 15 13:38 5782_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 15 13:38 5782_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 202 Dec 15 13:38 5782_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 206 Dec 15 13:38 5782_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 201 Dec 15 13:38 5782_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 205 Dec 15 13:38 5782_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 200 Dec 15 13:38 5782_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 204 Dec 15 13:38 5782_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 199 Dec 15 13:38 5782_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 15 13:38 5782_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 201 Dec 15 13:38 5782_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 205 Dec 15 13:38 5782_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 200 Dec 15 13:38 5782_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 204 Dec 15 13:38 5782_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 199 Dec 15 13:38 5782_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 15 13:38 5782_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 198 Dec 15 13:38 5782_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 202 Dec 15 13:38 5782_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 201 Dec 15 13:38 5782_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 205 Dec 15 13:38 5782_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 200 Dec 15 13:38 5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 204 Dec 15 13:38 5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 199 Dec 15 13:38 5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 203 Dec 15 13:38 5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 198 Dec 15 13:38 5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 202 Dec 15 13:38 5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -``` -
-
- - -#### "unprocessed" `.bam`s -
-Go to bams_2022-1212/unprocessed, unlink the unusable symlinks (fr/absolute paths), create usable symlinks (fr/relative paths), run `.,` - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd ../unprocessed - -for i in *.bam *.bai; do unlink "${i}"; done -., -# total 72K -# drwxrws--- 2 kalavatt 0 Dec 15 09:51 ./ -# drwxrws--- 6 kalavatt 124 Dec 15 09:41 ../ - -pwd -# /home/kalavatt/tsukiyamalab/alisong/assess_transcriptome_assemblies/bams_2022-1212/unprocessed - -# ., ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local -path_unpro="../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local" -# echo "${path_unpro}" -# ., "${path_unpro}" -# ls "${path_unpro}" | wc -l - -for i in "${path_unpro}/"*".sc_all.ba"*; do - # ., "${i}" - # echo "${i}" - # echo "ln -s ${i}" "$(basename "${i}")" - # echo "" - - ln -s "${i}" "$(basename "${i}")" -done - -., -``` -
-
- -
-Printed to terminal: `.,` - -```txt -total 2.0M -drwxrws--- 2 kalavatt 6.4K Dec 15 13:36 ./ -drwxrws--- 6 kalavatt 124 Dec 15 13:15 ../ -lrwxrwxrwx 1 kalavatt 188 Dec 15 13:36 5781_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 192 Dec 15 13:36 5781_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 187 Dec 15 13:36 5781_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 191 Dec 15 13:36 5781_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 186 Dec 15 13:36 5781_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 190 Dec 15 13:36 5781_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 185 Dec 15 13:36 5781_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 189 Dec 15 13:36 5781_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 188 Dec 15 13:36 5781_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 192 Dec 15 13:36 5781_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 187 Dec 15 13:36 5781_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 191 Dec 15 13:36 5781_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 186 Dec 15 13:36 5781_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 190 Dec 15 13:36 5781_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 185 Dec 15 13:36 5781_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 189 Dec 15 13:36 5781_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 187 Dec 15 13:36 5781_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 191 Dec 15 13:36 5781_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 186 Dec 15 13:36 5781_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 190 Dec 15 13:36 5781_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 185 Dec 15 13:36 5781_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 189 Dec 15 13:36 5781_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 184 Dec 15 13:36 5781_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 188 Dec 15 13:36 5781_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 187 Dec 15 13:36 5781_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 191 Dec 15 13:36 5781_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 186 Dec 15 13:36 5781_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 190 Dec 15 13:36 5781_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 185 Dec 15 13:36 5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 189 Dec 15 13:36 5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 184 Dec 15 13:36 5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 188 Dec 15 13:36 5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 188 Dec 15 13:36 5782_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 192 Dec 15 13:36 5782_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 187 Dec 15 13:36 5782_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 191 Dec 15 13:36 5782_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 186 Dec 15 13:36 5782_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 190 Dec 15 13:36 5782_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 185 Dec 15 13:36 5782_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 189 Dec 15 13:36 5782_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 188 Dec 15 13:36 5782_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 192 Dec 15 13:36 5782_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 187 Dec 15 13:36 5782_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 191 Dec 15 13:36 5782_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 186 Dec 15 13:36 5782_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 190 Dec 15 13:36 5782_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 185 Dec 15 13:36 5782_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 189 Dec 15 13:36 5782_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 187 Dec 15 13:36 5782_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 191 Dec 15 13:36 5782_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 186 Dec 15 13:36 5782_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 190 Dec 15 13:36 5782_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 185 Dec 15 13:36 5782_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 189 Dec 15 13:36 5782_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 184 Dec 15 13:36 5782_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 188 Dec 15 13:36 5782_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 187 Dec 15 13:36 5782_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 191 Dec 15 13:36 5782_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 186 Dec 15 13:36 5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 190 Dec 15 13:36 5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 185 Dec 15 13:36 5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 189 Dec 15 13:36 5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 184 Dec 15 13:36 5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 188 Dec 15 13:36 5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam.bai -``` -
-
- - -#### "processed (full)" .`bam`s -
-Go to bams_2022-1212/processed-full, unlink the unusable symlinks (fr/absolute paths), create usable symlinks (fr/relative paths), run `.,` - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd ../preprocessed-full - -for i in *.bam *.bai; do unlink "${i}"; done -., -# total 80K -# drwxrws--- 2 kalavatt 0 Dec 15 10:24 ./ -# drwxrws--- 6 kalavatt 124 Dec 15 09:41 ../ - -pwd -# /home/kalavatt/tsukiyamalab/alisong/assess_transcriptome_assemblies/bams_2022-1212/preprocessed-full - -# ., ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd -path_prepro_full="../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd" -# echo "${path_prepro_full}" -# ., "${path_prepro_full}" - -for i in "${path_prepro_full}/"*".sc_all.ba"*; do - # ., "${i}" - # echo "${i}" - # echo "ln -s ${i}" "$(basename "${i}")" - # echo "" - - ln -s "${i}" "$(basename "${i}")" -done -., -``` -
-
- -
-Printed to terminal: `.,` - -```txt -total 2.0M -drwxrws--- 2 kalavatt 7.0K Dec 15 13:37 ./ -drwxrws--- 6 kalavatt 124 Dec 15 13:15 ../ -lrwxrwxrwx 1 kalavatt 218 Dec 15 13:37 5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 222 Dec 15 13:37 5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 217 Dec 15 13:37 5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 221 Dec 15 13:37 5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 216 Dec 15 13:37 5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 220 Dec 15 13:37 5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 215 Dec 15 13:37 5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 219 Dec 15 13:37 5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 218 Dec 15 13:37 5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 222 Dec 15 13:37 5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 217 Dec 15 13:37 5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 221 Dec 15 13:37 5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 216 Dec 15 13:37 5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 220 Dec 15 13:37 5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 215 Dec 15 13:37 5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 219 Dec 15 13:37 5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 217 Dec 15 13:37 5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 221 Dec 15 13:37 5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 216 Dec 15 13:37 5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 220 Dec 15 13:37 5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 215 Dec 15 13:37 5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 219 Dec 15 13:37 5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 214 Dec 15 13:37 5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 218 Dec 15 13:37 5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 217 Dec 15 13:37 5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 221 Dec 15 13:37 5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 216 Dec 15 13:37 5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 220 Dec 15 13:37 5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 215 Dec 15 13:37 5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 219 Dec 15 13:37 5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 214 Dec 15 13:37 5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 218 Dec 15 13:37 5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 218 Dec 15 13:37 5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 222 Dec 15 13:37 5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 217 Dec 15 13:37 5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 221 Dec 15 13:37 5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 216 Dec 15 13:37 5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 220 Dec 15 13:37 5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 215 Dec 15 13:37 5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 219 Dec 15 13:37 5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 218 Dec 15 13:37 5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 222 Dec 15 13:37 5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 217 Dec 15 13:37 5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 221 Dec 15 13:37 5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 216 Dec 15 13:37 5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 220 Dec 15 13:37 5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 215 Dec 15 13:37 5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 219 Dec 15 13:37 5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 217 Dec 15 13:37 5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 221 Dec 15 13:37 5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 216 Dec 15 13:37 5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 220 Dec 15 13:37 5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 215 Dec 15 13:37 5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 219 Dec 15 13:37 5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 214 Dec 15 13:37 5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 218 Dec 15 13:37 5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 217 Dec 15 13:37 5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 221 Dec 15 13:37 5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 216 Dec 15 13:37 5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 220 Dec 15 13:37 5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 215 Dec 15 13:37 5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 219 Dec 15 13:37 5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -lrwxrwxrwx 1 kalavatt 214 Dec 15 13:37 5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -lrwxrwxrwx 1 kalavatt 218 Dec 15 13:37 5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam.bai -``` -
-
- - -### Now, edit the `.bam`-to-`.bw` script and make `.bw`s - -#### Update the script -
-Go to bams_2022-1212/bigwig_test1, unlink unusable symlinks to bams (fr/absolute paths), then archive AG's work with the broken links - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd ../bigwig_test1 -., -# total 355K -# drwxrws--- 3 agreenla 523 Dec 15 09:41 ./ -# drwxrws--- 6 kalavatt 124 Dec 15 09:41 ../ -# lrwxrwxrwx 1 agreenla 154 Dec 14 15:14 5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.bam -> /home/agreenla/tsukiyamalab/alisong/Kris/bams_2022-1212/preprocessed/5781_Q_IP_merged.trim.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -# lrwxrwxrwx 1 agreenla 153 Dec 14 15:14 5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.bam -> /home/agreenla/tsukiyamalab/alisong/Kris/bams_2022-1212/preprocessed/5781_Q_IP_merged.trim.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -# lrwxrwxrwx 1 agreenla 164 Dec 14 15:18 5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.bam -> /home/agreenla/tsukiyamalab/alisong/Kris/bams_2022-1212/preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -# lrwxrwxrwx 1 agreenla 163 Dec 14 15:17 5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.bam -> /home/agreenla/tsukiyamalab/alisong/Kris/bams_2022-1212/preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -# lrwxrwxrwx 1 agreenla 148 Dec 14 15:31 5781_Q_IP_merged.un_multi-hit-mode_10_Local.bam -> /home/agreenla/tsukiyamalab/alisong/Kris/bams_2022-1212/unprocessed/5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -# lrwxrwxrwx 1 agreenla 147 Dec 14 15:31 5781_Q_IP_merged.un_multi-hit-mode_1_Local.bam -> /home/agreenla/tsukiyamalab/alisong/Kris/bams_2022-1212/unprocessed/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -# -rw-rw---- 1 agreenla 639 Dec 14 15:38 bamcoverage_strandselect.sh -# drwxrws--- 2 agreenla 0 Dec 14 15:39 bigwigs1/ -# -rw-rw---- 1 agreenla 4.8K Dec 14 15:39 slurm-5685397.out - -# Remove the bigwigs1/ directory -rmdir bigwigs1/ - -# Remove the symlinks -for i in *.bam; do - # echo "${i}" - unlink "${i}" -done - -# Archive the stuff from Alison -mkdir archive -mv bamcoverage_strandselect.sh slurm-5685397.out archive -# renamed 'bamcoverage_strandselect.sh' -> 'archive/bamcoverage_strandselect.sh' -# renamed 'slurm-5685397.out' -> 'archive/slurm-5685397.out' -``` -
-
- - -##### Scratch: `bamcoverage_strandselect.sh` -Now, update AG's script, `bamcoverage_strandselect.sh`, to... -`#QUESTION` Does `deepTools` `bamCoverage` have a `parallel` mode? `#ANSWER` ~~No...~~*Yes.* - - -###### Before (AG) -
-The contents of the shell script `bamcoverage_strandselect.sh` - -```bash -#!/bin/bash -WRAP="" -RUNDIR=`pwd`; - -# Please review the variables below and update if needed. -THREADS=8 - -module load deepTools - -mkdir bigwigs1 - -for file in *.bam; do - - bamCoverage -b ${file} --normalizeUsing CPM --filterRNAstrand forward -o ${file%.bam}_fwd.bw - bamCoverage -b ${file} --normalizeUsing CPM --filterRNAstrand reverse -o ${file%.bam}_rev.bw - - bamCoverage -b ${file} --normalizeUsing CPM --minMappingQuality 3 --filterRNAstrand forward -o ${file%.bam}_fwd_mapQ3.bw - bamCoverage -b ${file} --normalizeUsing CPM --minMappingQuality 3 --filterRNAstrand reverse -o ${file%.bam}_rev_mapQ3.bw - - - - done - - mv *.bw bigwigs1 - -done -``` -
-
- - -###### After (KA) -
-Contents of new script, `submit_bamCoverage.sh` - -`#NOTE` `2023-0104` I neglected to rename `#SBATCH --error=` and `#SBATCH --output=` -```bash -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./bamcoverage_strandselect.sh.%J.err.txt -#SBATCH --output=./bamcoverage_strandselect.sh.%J.out.txt - -# submit_bamCoverage.sh -# AG, KA -# 2022-1215 - -module load deepTools - -infile="${1}" - -# Make directories for outfiles -mkdir -p {MAPQ0,MAPQ3,MAPQ30} - -# Run bamCoverage -# ...with no MAPQ filtering -bamCoverage \ - -p ${SLURM_CPUS_ON_NODE} \ - --ignoreDuplicates \ - -b ${file} \ - --normalizeUsing CPM \ - --filterRNAstrand forward \ - -o ${file%.bam}_MAPQ0_fwd.bw - -bamCoverage \ - -p ${SLURM_CPUS_ON_NODE} \ - --ignoreDuplicates \ - -b ${file} \ - --normalizeUsing CPM \ - --filterRNAstrand reverse \ - -o ${file%.bam}_MAPQ0_rev.bw - -# ...by excluding alignments less than MAPQ 3 -bamCoverage \ - -p ${SLURM_CPUS_ON_NODE} \ - --ignoreDuplicates \ - -b ${file} \ - --normalizeUsing CPM \ - --minMappingQuality 3 \ - --filterRNAstrand forward \ - -o ${file%.bam}_fwd_MAPQ3.bw - -bamCoverage \ - -p ${SLURM_CPUS_ON_NODE} \ - --ignoreDuplicates \ - -b ${file} \ - --normalizeUsing CPM \ - --minMappingQuality 3 \ - --filterRNAstrand reverse \ - -o ${file%.bam}_rev_MAPQ3.bw - -# ...by excluding alignments less than MAPQ 30 -bamCoverage \ - -p ${SLURM_CPUS_ON_NODE} \ - --ignoreDuplicates \ - -b ${file} \ - --normalizeUsing CPM \ - --minMappingQuality 30 \ - --filterRNAstrand forward \ - -o ${file%.bam}_fwd_MAPQ30.bw - -bamCoverage \ - -p ${SLURM_CPUS_ON_NODE} \ - --ignoreDuplicates \ - -b ${file} \ - --normalizeUsing CPM \ - --minMappingQuality 30 \ - --filterRNAstrand reverse \ - -o ${file%.bam}_rev_MAPQ30.bw -``` -
-
- - -###### Notes about the previous script for teaching purposes -
-Notes about the previous script for teaching purposes - -Some quick notes about the previous script for teaching purposes: -- Important - + `bamCoverage` has a parameter to run in parallel, but it won't recognize it unless you call it with the `-p` option - * So, without specifying `-p`, `THREADS` becomes an unused variable - * Also, when submitting the job to `SLURM`, you need to tell it to assign 8 (or however many) cores/CPUs to the job, - - either through the call to `sbatch` (`-c` or `--cpus-per-task`) - - or through a `#SBATCH` line in the job submission script: `#SBATCH --cpus-per-task=#` - + I recommend to get used to explicitly telling `SLURM` things with lines in the script that start with `#SBATCH` (see below) - + Rather than have the `for loop` in the job submission script, use the for loop outside of the script; - * Write the script to take a single infile - * Then,loop over the files, applying the script to each file - * I'll show an example below... - + To organize your results, explicitly specify to `SLURM` that you want `stderr` and `stdout` files - * Save the files to specific locations *(optional, but important for organizing your results/staying on top of things)* - * ...with specific names - + ~~Don't do directory remodeling, etc. inside the script~~ If it's limited in scope, then it's fine, especially if it's a thing you want to do repeatedly with consistent, specific directory changes -- Less important - + I told you yesterday that a MAPQ score of 30 represents of 99.99% that the mapped position is correct, but that's incorrect—it's actually 99.9% - * Some details on MAPQ [here](http://www.acgt.me/blog/2014/12/16/understanding-mapq-scores-in-sam-files-does-37-42) - + Delete all of the unused variables—they're confusing for other people using your script -
-
- - -##### Make `submit_bamCoverage.sh` -
-Click to view code: HEREDOC to make `submit_bamCoverage.sh` - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -s_name="submit_bamCoverage.sh" - -if [[ -f "${s_name}" ]]; then rm "${s_name}"; fi -cat << script > "${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./stderr.${s_name}.%J.txt -#SBATCH --output=./stdout.${s_name}.%J.txt - -# ${s_name} -# AG, KA -# $(date '+%Y-%m%d') - -module load deepTools - -infile="\${1}" -outfile="\${2}" - -# Make directories for outfiles -mkdir -p {MAPQ0,MAPQ3,MAPQ30} - -# Run bamCoverage -# ...with no MAPQ filtering -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - --ignoreDuplicates \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --filterRNAstrand forward \\ - -o "MAPQ0/\${outfile}_MAPQ0_fwd.bw" - -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - --ignoreDuplicates \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --filterRNAstrand reverse \\ - -o "MAPQ0/\${outfile}_MAPQ0_rev.bw" - -# ...by excluding alignments less than MAPQ 3 -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - --ignoreDuplicates \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --minMappingQuality 3 \\ - --filterRNAstrand forward \\ - -o "MAPQ3/\${outfile}_MAPQ3_fwd.bw" - -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - --ignoreDuplicates \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --minMappingQuality 3 \\ - --filterRNAstrand reverse \\ - -o "MAPQ3/\${outfile}_MAPQ3_rev.bw" - -# ...by excluding alignments less than MAPQ 30 -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - --ignoreDuplicates \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --minMappingQuality 30 \\ - --filterRNAstrand forward \\ - -o "MAPQ30/\${outfile}_MAPQ30_fwd.bw" - -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - --ignoreDuplicates \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --minMappingQuality 30 \\ - --filterRNAstrand reverse \\ - -o "MAPQ30/\${outfile}_MAPQ30_rev.bw" -script -# vi "${s_name}" # :q -``` -
-
- - -##### Get the `.bam`s of interest into an array (or glob) to be looped over for job submissions -
-More notes for teaching purposes - -- In my attempts to come up with something teachable, I think I've gone about doing this in a way that is, in some ways, not good -- What's not good about it? - + For one, we're parsing the results of `ls`, which is frowned upon (but somewhat fine for rough-draft work and assuming your filenames are "normal") - * [unix.stackexchange.com/questions/128985/why-not-parse-ls-and-what-to-do-instead](https://unix.stackexchange.com/questions/128985/why-not-parse-ls-and-what-to-do-instead) - * [mywiki.wooledge.org/ParsingLs](http://mywiki.wooledge.org/ParsingLs) - + Very poor control of what's being globbed onto - + Using relative paths to find things: This code snippet is even more context-sensitive, and thus breakable, than normal -
-
- -
-Click to view code: Get the .bams of interest into an array (or glob) to be looped over; submit jobs for submit_bamCoverage.sh - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -pwd -# /home/kalavatt/tsukiyamalab/alisong/assess_transcriptome_assemblies/bams_2022-1212/bigwig_test1 - -# Glob approach with ls #NOTE This is bad practice, but it's fine for now -for i in $(ls -1R ../{unprocessed,preprocessed,preprocessed-full}/5781_Q_IP*multi-hit-mode_{10,1}_*.sc_all.bam); do - echo "${i}" -done -# ../preprocessed/5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -# ../preprocessed/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -# ../preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -# ../preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -# ../unprocessed/5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -# ../unprocessed/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - -# for i in $(ls -1R ../{unprocessed,preprocessed,preprocessed-full}/5781_Q_IP*multi-hit-mode_{10,1}_*.sc_all.bam); do -# echo "${i}" -# done - -# Strip away the leading '../', strip away '.bam' extension -for i in $(ls -1R ../{unprocessed,preprocessed,preprocessed-full}/5781_Q_IP*multi-hit-mode_{10,1}_*.sc_all.bam); do - echo "${i##\.\.\/}" # One way to do it - echo "$(basename "${i}")" # Easier way to do it - echo "$(basename "${i}" ".bam")" # Do both at the same time - echo "" -done - -for i in $(ls -1R ../{unprocessed,preprocessed,preprocessed-full}/5781_Q_IP*multi-hit-mode_{10,1}_*.sc_all.bam); do - ., "${i}" - echo "" - echo "Submitting SLURM job for ${i}..." - # echo "${s_name}" "${i}" "$(basename "${i}" .bam)" - sbatch "${s_name}" "${i}" "$(basename "${i}" .bam)" - echo "" - echo "" -done - - -#TODO With the jobs now completed, mv and rename the bigwig directory -#WAIT Wait to get feedback from Alison on the files -``` -
-
- -
-Printed to terminal: Submit jobs for submit_bamCoverage.sh - -```txt -lrwxrwxrwx 1 kalavatt 199 Dec 15 13:38 ../preprocessed/5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -Submitting SLURM job for ../preprocessed/5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam... -Submitted batch job 5707988 - - -lrwxrwxrwx 1 kalavatt 198 Dec 15 13:38 ../preprocessed/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed/bam_trim_split/EndToEnd/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -Submitting SLURM job for ../preprocessed/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam... -Submitted batch job 5707989 - - -lrwxrwxrwx 1 kalavatt 215 Dec 15 13:37 ../preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -Submitting SLURM job for ../preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam... -Submitted batch job 5707990 - - -lrwxrwxrwx 1 kalavatt 214 Dec 15 13:37 ../preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_processed-full/bam_trim-rcor-cor_split/EndToEnd/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam - -Submitting SLURM job for ../preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam... -Submitted batch job 5707991 - - -lrwxrwxrwx 1 kalavatt 185 Dec 15 13:36 ../unprocessed/5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam - -Submitting SLURM job for ../unprocessed/5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam... -Submitted batch job 5707992 - - -lrwxrwxrwx 1 kalavatt 184 Dec 15 13:36 ../unprocessed/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam -> ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201/files_unprocessed/bam_split/Local/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam - -Submitting SLURM job for ../unprocessed/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam... -Submitted batch job 5707993 -``` -
-
-
- - -## Symlinking more `.bam`s and creating more `.bw`s, 2022-1216 - -### Checking on what `.bam`s have been symlinked -
-Click to view: Get on a node, load conda environment, go to work directory, check on things - -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 and corresponding defaults -Trinity_env - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -awd() { - ~/assess_transcriptome_assemblies \ - && cd "./bams_2022-1212" \ - || echo "cd'ing failed; check on this" -} - - -# mwd -awd - -ls -1 ./* -#NOTE We've already symlinked to *.multi-hit-mode_{100,1000}_*.{bam,bam.bai} -``` -
-
- - -### Reorganize the `.bw`s -
-Click to view: Rename and reorganize work directory, check on things - -```bash -#!/bin/bash -#DONTRUN - -mv bigwig_test1 ../bws_2022-1215 -cd .. && ., -# drwxrws--- 6 kalavatt 125 Dec 16 09:10 ./ -# drwxrws--- 49 agreenla 3.2K Dec 15 09:21 ../ -# drwxrws--- 5 kalavatt 94 Dec 16 09:10 bams_2022-1212/ -# drwxrws--- 6 agreenla 1.1K Dec 15 14:48 bws_2022-1215/ -# drwxrws--- 4 kalavatt 83 Dec 16 08:09 gff3s_2022-1214/ -# drwxrws--- 2 agreenla 1.5K Dec 15 09:41 IGV_sharing/ - -cd bws_2022-1215 && ., -# drwxrws--- 6 agreenla 830 Dec 16 09:11 ./ -# drwxrws--- 6 kalavatt 125 Dec 16 09:10 ../ -# drwxrws--- 2 kalavatt 80 Dec 16 09:11 archive/ -# drwxrws--- 2 kalavatt 1.4K Dec 15 14:00 MAPQ0/ -# drwxrws--- 2 kalavatt 1.4K Dec 15 14:04 MAPQ3/ -# drwxrws--- 2 kalavatt 1.4K Dec 15 14:07 MAPQ30/ -# -rw-rw---- 1 kalavatt 4.1K Dec 15 14:04 stderr.submit_bamCoverage.sh.5707988.txt -# -rw-rw---- 1 kalavatt 4.1K Dec 15 14:05 stderr.submit_bamCoverage.sh.5707989.txt -# -rw-rw---- 1 kalavatt 4.2K Dec 15 14:04 stderr.submit_bamCoverage.sh.5707990.txt -# -rw-rw---- 1 kalavatt 4.2K Dec 15 14:03 stderr.submit_bamCoverage.sh.5707991.txt -# -rw-rw---- 1 kalavatt 4.1K Dec 15 14:06 stderr.submit_bamCoverage.sh.5707992.txt -# -rw-rw---- 1 kalavatt 4.1K Dec 15 14:03 stderr.submit_bamCoverage.sh.5707993.txt -# -rw-rw---- 1 kalavatt 608 Dec 15 14:04 stdout.submit_bamCoverage.sh.5707988.txt -# -rw-rw---- 1 kalavatt 606 Dec 15 14:05 stdout.submit_bamCoverage.sh.5707989.txt -# -rw-rw---- 1 kalavatt 606 Dec 15 14:04 stdout.submit_bamCoverage.sh.5707990.txt -# -rw-rw---- 1 kalavatt 603 Dec 15 14:03 stdout.submit_bamCoverage.sh.5707991.txt -# -rw-rw---- 1 kalavatt 606 Dec 15 14:06 stdout.submit_bamCoverage.sh.5707992.txt -# -rw-rw---- 1 kalavatt 609 Dec 15 14:03 stdout.submit_bamCoverage.sh.5707993.txt -# -rw-rw---- 1 kalavatt 1.7K Dec 15 13:54 submit_bamCoverage.sh - - -# Organize things, clean things up ------------------------------------------- -mv submit_bamCoverage.sh submit_bamCoverage_param-ignoreDuplicates-TRUE.sh - -mkdir -p {param_ignoreDuplicates-TRUE,param_ignoreDuplicates-FALSE}/err_out -mv MAPQ{0,3,30} param_ignoreDuplicates-TRUE/ -mv *.txt param_ignoreDuplicates-TRUE/err_out -mv *.sh param_ignoreDuplicates-TRUE/ && cd param_ignoreDuplicates-TRUE/ -``` -
-
- - -### Create `--ignoreDuplicates` `.bw`s for `multi-hit-mode 100`, `1000` -
-Click to view code: Create --ignoreDuplicates .bws for multi-hit-mode 100, 1000 - -```bash -#!/bin/bash -#DONTRUN - -cd param_ignoreDuplicates-TRUE && .,s - -# Get the multi-hit-mode 100, 1000 files into an array (with absolute paths) -# cd ../.. -unset bams -typeset -a bams -while IFS=" " read -r -d $'\0'; do - bams+=( "${REPLY}" ) -done < <(\ - find ../.. \ - -type l \ - \( \ - -name "*multi-hit-mode_100_*.bam" \ - -o -name "*multi-hit-mode_1000_*.bam" \ - \) \ - -print0 | \ - sort -z -) -echoTest "${bams[@]}" # It works! - -s_name="submit_bamCoverage_param-ignoreDuplicates-TRUE.sh" -for i in "${bams[@]}"; do - echo "sbatch ${s_name} ${i} $(basename "${i}" .bam)" - echo "" - - sbatch ${s_name} ${i} $(basename "${i}" .bam) - echo "" - echo "" -done -``` -
-
- -
-Printed to terminal: Create --ignoreDuplicates .bws for multi-hit-mode 100, 1000 - -```txt -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5781_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745678 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5781_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745679 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5781_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745680 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5781_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745681 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5781_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745682 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5781_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745683 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5781_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745684 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5781_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745685 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5782_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745686 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5782_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745687 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5782_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745688 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5782_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745689 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5782_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745690 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5782_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745691 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5782_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745692 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed/5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745693 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745694 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745695 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745696 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745697 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745698 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745699 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745700 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745701 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745702 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745703 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745704 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745705 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745706 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745707 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745708 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/preprocessed-full/5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745709 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5781_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745710 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5781_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745711 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5781_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745712 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5781_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745713 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5781_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745714 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5781_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745715 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5781_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745716 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5781_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745717 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5782_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745718 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5782_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745719 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5782_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745720 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5782_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745721 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5782_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745722 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5782_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745723 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5782_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745724 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-TRUE.sh ../../bams_2022-1212/unprocessed/5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745725 -``` -
-
- - -### Create non-`--ignoreDuplicates` `.bw`s for `multi-hit-mode` `1`, `10`, `100`, `1000` - -#### Make the submission script -
-Click to view code: Make the submission script for non --ignoreDuplicates .bws for multi-hit-mode 1, 10, 100, 1000, then submit jobs - -```bash -#!/bin/bash -#DONTRUN - -# First, get to the correct working directory -pwd -# /home/kalavatt/assess_transcriptome_assemblies/bws_2022-1215/param_ignoreDuplicates-TRUE -cd ../param_ignoreDuplicates-FALSE -# /home/kalavatt/assess_transcriptome_assemblies/bws_2022-1215/param_ignoreDuplicates-FALSE - -s_name="submit_bamCoverage_param-ignoreDuplicates-FALSE.sh" - -if [[ -f "${s_name}" ]]; then rm "${s_name}"; fi -cat << script > "${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./err_out/stderr.${s_name}.%J.txt -#SBATCH --output=./err_out/stdout.${s_name}.%J.txt - -# ${s_name} -# AG, KA -# $(date '+%Y-%m%d') - -module load deepTools - -infile="\${1}" -outfile="\${2}" - -# Make directories for outfiles -mkdir -p {MAPQ0,MAPQ3,MAPQ30} - - -# --------------------------------------------------------------------------- -# Run bamCoverage ------------------------------------------------------------ -# --------------------------------------------------------------------------- - -# ...with no MAPQ filtering ------------------------------------------------- -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --filterRNAstrand forward \\ - -o "MAPQ0/\${outfile}_MAPQ0_fwd.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --filterRNAstrand reverse \\ - -o "MAPQ0/\${outfile}_MAPQ0_rev.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - - -# ...by excluding alignments less than MAPQ 3 -------------------------------- -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --minMappingQuality 3 \\ - --filterRNAstrand forward \\ - -o "MAPQ3/\${outfile}_MAPQ3_fwd.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --minMappingQuality 3 \\ - --filterRNAstrand reverse \\ - -o "MAPQ3/\${outfile}_MAPQ3_rev.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - - -# ...by excluding alignments less than MAPQ 30 ------------------------------- -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --minMappingQuality 30 \\ - --filterRNAstrand forward \\ - -o "MAPQ30/\${outfile}_MAPQ30_fwd.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --minMappingQuality 30 \\ - --filterRNAstrand reverse \\ - -o "MAPQ30/\${outfile}_MAPQ30_rev.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - -script -# vi "${s_name}" # :q - - -# Get files of interest into an array ---------------------------------------- -unset bams -typeset -a bams -while IFS=" " read -r -d $'\0'; do - bams+=( "${REPLY}" ) -done < <(\ - find ../.. \ - -type l \ - \( \ - -name "*multi-hit-mode_1_*.bam" \ - -o -name "*multi-hit-mode_10_*.bam" \ - -o -name "*multi-hit-mode_100_*.bam" \ - -o -name "*multi-hit-mode_1000_*.bam" \ - \) \ - -print0 | \ - sort -z -) -echoTest "${bams[@]}" # It works! - -echo "${s_name}" # submit_bamCoverage_param-ignoreDuplicates-FALSE.sh -for i in "${bams[@]}"; do - echo "sbatch ${s_name} ${i} $(basename "${i}" .bam)" - echo "" - - sbatch ${s_name} ${i} $(basename "${i}" .bam) - echo "" - echo "" - sleep 0.33 -done -``` -
-
- -
-Printed to terminal: Submission of jobs - -```txt -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745765 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745766 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745767 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745768 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745769 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745770 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745771 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745772 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745773 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745774 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745775 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745776 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745777 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745778 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745779 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745780 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745781 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745782 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745783 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745784 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745785 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745786 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745787 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745788 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745789 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745790 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745791 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745792 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.trim.un_multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745793 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745794 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745795 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed/5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745796 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745797 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745798 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745799 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745800 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745801 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745802 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745803 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745804 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745805 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745806 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745807 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745808 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745809 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745810 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745811 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745812 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745813 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745814 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745815 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745816 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745817 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745818 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745819 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745820 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745821 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745822 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745823 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745824 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.trim-rcor.multi-hit-mode_1000_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745825 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745826 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745827 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/preprocessed-full/5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745828 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745829 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745830 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745831 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745832 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745833 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745834 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745835 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745836 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745837 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745838 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745839 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745840 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745841 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745842 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745843 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam 5781_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745844 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745845 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745846 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745847 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745848 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745849 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745850 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745851 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_G1_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745852 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745853 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745854 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745855 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IN_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745856 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.un_multi-hit-mode_1000_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745857 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.un_multi-hit-mode_100_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745858 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.un_multi-hit-mode_10_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745859 - - -sbatch submit_bamCoverage_param-ignoreDuplicates-FALSE.sh ../../bams_2022-1212/unprocessed/5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all.bam 5782_Q_IP_merged.un_multi-hit-mode_1_Local.Aligned.sortedByCoord.out.sc_all - -Submitted batch job 5745860 -``` -
-
-
- - -## Symlink to merged `.bam`s and create `.bw`s for them, 2022-1216 -
-Click to view code: Go to work directory, load environment, symlink to merged .bams, and create .bws - -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 and corresponding defaults -Trinity_env - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -awd() { - ~/assess_transcriptome_assemblies \ - || echo "cd'ing failed; check on this" -} - - -# Identify the files of interest to symlink to ------------------------------- -mwd -ls -1 ./files_{processed,processed-full}/*_split_merge/EndToEnd -ls -1 ./files_unprocessed/*_split_merge/Local - -p_exp="$(pwd)" -echo "${p_exp}" - - -# Get relative paths, set things up, etc. ------------------------------------ -awd -# ., - -# Create directories for outfiles ------------------------ -mkdir -p {bams_merged_2022-1216,bws_merged_2022-1216}/{unprocessed,preprocessed,preprocessed-full} -# mkdir: created directory 'bams_merged_2022-1216' -# mkdir: created directory 'bams_merged_2022-1216/unprocessed' -# mkdir: created directory 'bams_merged_2022-1216/preprocessed' -# mkdir: created directory 'bams_merged_2022-1216/preprocessed-full' -# mkdir: created directory 'bws_merged_2022-1216' -# mkdir: created directory 'bws_merged_2022-1216/unprocessed' -# mkdir: created directory 'bws_merged_2022-1216/preprocessed' -# mkdir: created directory 'bws_merged_2022-1216/preprocessed-full' - -mkdir -p bws_merged_2022-1216/{unprocessed,preprocessed,preprocessed-full}/{param_ignoreDuplicates-FALSE,param_ignoreDuplicates-TRUE} -# mkdir: created directory 'bws_merged_2022-1216/unprocessed/param_ignoreDuplicates-FALSE' -# mkdir: created directory 'bws_merged_2022-1216/unprocessed/param_ignoreDuplicates-TRUE' -# mkdir: created directory 'bws_merged_2022-1216/preprocessed/param_ignoreDuplicates-FALSE' -# mkdir: created directory 'bws_merged_2022-1216/preprocessed/param_ignoreDuplicates-TRUE' -# mkdir: created directory 'bws_merged_2022-1216/preprocessed-full/param_ignoreDuplicates-FALSE' -# mkdir: created directory 'bws_merged_2022-1216/preprocessed-full/param_ignoreDuplicates-TRUE' - -find_relative_path() { - realpath --relative-to="${1}" "${2}" -} - - - -# Set up paths, arrays, etc. for symlinking *.{bam,bai} ---------------------- -cd bams_merged_2022-1216/preprocessed-full/ -# /home/kalavatt/assess_transcriptome_assemblies/bams_merged_2022-1216/preprocessed-full - -rel_exp="$(find_relative_path "$(pwd)/" "${p_exp}")" -echo "${rel_exp}" -# ../../../../kalavatt/2022_transcriptome-construction/results/2022-1201 - -for i in ${rel_exp}/files_processed-full/*_split_merge/EndToEnd/*; do - # ., "${i}" - echo " Key: ${i}" - echo "Value: $(basename "${i}")" - echo "" - - echo "ln -s ${i} $(basename "${i}")" - ln -s ${i} $(basename "${i}") - echo "" - echo "" -done -., - -cd ../preprocessed/ -for i in ${rel_exp}/files_processed/*_split_merge/EndToEnd/*; do - # ., "${i}" - echo " Key: ${i}" - echo "Value: $(basename "${i}")" - echo "" - - echo "ln -s ${i} $(basename "${i}")" - ln -s ${i} $(basename "${i}") - echo "" - echo "" -done -., - -cd ../unprocessed -for i in ${rel_exp}/files_unprocessed/*_split_merge/Local/*; do - # ., "${i}" - echo " Key: ${i}" - echo "Value: $(basename "${i}")" - echo "" - - echo "ln -s ${i} $(basename "${i}")" - ln -s ${i} $(basename "${i}") - echo "" - echo "" -done -., - -cd .. && .,s # Looks good - -awd && cd bws_merged_2022-1216 -.,s -# ./preprocessed: -# total 144K -# drwxrws--- 4 kalavatt 91 Dec 16 10:22 ./ -# drwxrws--- 5 kalavatt 94 Dec 16 10:20 ../ -# drwxrws--- 2 kalavatt 0 Dec 16 10:22 param_ignoreDuplicates-FALSE/ -# drwxrws--- 2 kalavatt 0 Dec 16 10:22 param_ignoreDuplicates-TRUE/ -# -# ./preprocessed-full: -# total 152K -# drwxrws--- 4 kalavatt 91 Dec 16 10:22 ./ -# drwxrws--- 5 kalavatt 94 Dec 16 10:20 ../ -# drwxrws--- 2 kalavatt 0 Dec 16 10:22 param_ignoreDuplicates-FALSE/ -# drwxrws--- 2 kalavatt 0 Dec 16 10:22 param_ignoreDuplicates-TRUE/ -# -# ./unprocessed: -# total 152K -# drwxrws--- 4 kalavatt 91 Dec 16 10:22 ./ -# drwxrws--- 5 kalavatt 94 Dec 16 10:20 ../ -# drwxrws--- 2 kalavatt 0 Dec 16 10:22 param_ignoreDuplicates-FALSE/ -# drwxrws--- 2 kalavatt 0 Dec 16 10:22 param_ignoreDuplicates-TRUE/ - -# Clear the existing directory structure; make new one --- -#+ ...that is similar to the structure in bws_2022-1215/ -rmr preprocessed/ -rmr preprocessed-full/ -rmr unprocessed/ - -mkdir -p {param_ignoreDuplicates-FALSE,param_ignoreDuplicates-TRUE}/{MAPQ0,MAPQ3,MAPQ30,err_out} -.,s -# ./param_ignoreDuplicates-FALSE: -# total 224K -# drwxrws--- 6 kalavatt 95 Dec 16 10:49 ./ -# drwxrws--- 4 kalavatt 91 Dec 16 10:49 ../ -# drwxrws--- 2 kalavatt 0 Dec 16 10:49 err_out/ -# drwxrws--- 2 kalavatt 0 Dec 16 10:49 MAPQ0/ -# drwxrws--- 2 kalavatt 0 Dec 16 10:49 MAPQ3/ -# drwxrws--- 2 kalavatt 0 Dec 16 10:49 MAPQ30/ -# -# ./param_ignoreDuplicates-TRUE: -# total 232K -# drwxrws--- 6 kalavatt 95 Dec 16 10:49 ./ -# drwxrws--- 4 kalavatt 91 Dec 16 10:49 ../ -# drwxrws--- 2 kalavatt 0 Dec 16 10:49 err_out/ -# drwxrws--- 2 kalavatt 0 Dec 16 10:49 MAPQ0/ -# drwxrws--- 2 kalavatt 0 Dec 16 10:49 MAPQ3/ -# drwxrws--- 2 kalavatt 0 Dec 16 10:49 MAPQ30/ -``` - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# ---------------------------------------------------------------------------- -# Generate .bws from the merged .bams that have been symlinked --------------- -# ---------------------------------------------------------------------------- - -# param-ignoreDuplicates-FALSE ----------------------------------------------- - -# Make a job submission script --------------------------- -cd param_ignoreDuplicates-FALSE -s_name="submit_bamCoverage_param-ignoreDuplicates-FALSE.sh" - -if [[ -f "${s_name}" ]]; then rm "${s_name}"; fi -cat << script > "${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./err_out/stderr.${s_name}.%J.txt -#SBATCH --output=./err_out/stdout.${s_name}.%J.txt - -# ${s_name} -# AG, KA -# $(date '+%Y-%m%d') - -module load deepTools - -infile="\${1}" -outfile="\${2}" - -# Make directories for outfiles -mkdir -p {MAPQ0,MAPQ3,MAPQ30} - - -# --------------------------------------------------------------------------- -# Run bamCoverage ------------------------------------------------------------ -# --------------------------------------------------------------------------- - -# ...with no MAPQ filtering ------------------------------------------------- -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --filterRNAstrand forward \\ - -o "MAPQ0/\${outfile}_MAPQ0_fwd.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --filterRNAstrand reverse \\ - -o "MAPQ0/\${outfile}_MAPQ0_rev.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - - -# ...by excluding alignments less than MAPQ 3 -------------------------------- -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --minMappingQuality 3 \\ - --filterRNAstrand forward \\ - -o "MAPQ3/\${outfile}_MAPQ3_fwd.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --minMappingQuality 3 \\ - --filterRNAstrand reverse \\ - -o "MAPQ3/\${outfile}_MAPQ3_rev.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - - -# ...by excluding alignments less than MAPQ 30 ------------------------------- -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --minMappingQuality 30 \\ - --filterRNAstrand forward \\ - -o "MAPQ30/\${outfile}_MAPQ30_fwd.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --minMappingQuality 30 \\ - --filterRNAstrand reverse \\ - -o "MAPQ30/\${outfile}_MAPQ30_rev.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - -script -# vi "${s_name}" # :q - - -# Create an .bam array for generation of .bws ------------ -unset bams -typeset -a bams -while IFS=" " read -r -d $'\0'; do - bams+=( "${REPLY}" ) -done < <(\ - find "${HOME}/assess_transcriptome_assemblies/bams_merged_2022-1216" \ - -type l \ - \( \ - -name "*multi-hit-mode_1_*.bam" \ - -o -name "*multi-hit-mode_10_*.bam" \ - -o -name "*multi-hit-mode_100_*.bam" \ - -o -name "*multi-hit-mode_1000_*.bam" \ - \) \ - -print0 | \ - sort -z -) -echoTest "${bams[@]}" # It works! - - -# Submit the jobs ---------------------------------------- -echo "${s_name}" # submit_bamCoverage_param-ignoreDuplicates-FALSE.sh -for i in "${bams[@]}"; do - echo "sbatch ${s_name} ${i} $(basename "${i}" .bam)" - echo "" - - sbatch ${s_name} ${i} $(basename "${i}" .bam) - echo "" - echo "" - sleep 0.2 -done -``` - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# ---------------------------------------------------------------------------- -# Generate .bws from the merged .bams that have been symlinked --------------- -# ---------------------------------------------------------------------------- - -# param-ignoreDuplicates-TRUE ------------------------------------------------ - -# Make a job submission script --------------------------- -pwd -# /home/kalavatt/assess_transcriptome_assemblies/bws_merged_2022-1216/param_ignoreDuplicates-FALSE - -cd ../param_ignoreDuplicates-TRUE -s_name="submit_bamCoverage_param-ignoreDuplicates-TRUE.sh" - -if [[ -f "${s_name}" ]]; then rm "${s_name}"; fi -cat << script > "${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./err_out/stderr.${s_name}.%J.txt -#SBATCH --output=./err_out/stdout.${s_name}.%J.txt - -# ${s_name} -# AG, KA -# $(date '+%Y-%m%d') - -module load deepTools - -infile="\${1}" -outfile="\${2}" - -# Make directories for outfiles -mkdir -p {MAPQ0,MAPQ3,MAPQ30} - - -# --------------------------------------------------------------------------- -# Run bamCoverage ------------------------------------------------------------ -# --------------------------------------------------------------------------- - -# ...with no MAPQ filtering ------------------------------------------------- -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --ignoreDuplicates \\ - --normalizeUsing CPM \\ - --filterRNAstrand forward \\ - -o "MAPQ0/\${outfile}_MAPQ0_fwd.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --ignoreDuplicates \\ - --normalizeUsing CPM \\ - --filterRNAstrand reverse \\ - -o "MAPQ0/\${outfile}_MAPQ0_rev.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - - -# ...by excluding alignments less than MAPQ 3 -------------------------------- -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --ignoreDuplicates \\ - --normalizeUsing CPM \\ - --minMappingQuality 3 \\ - --filterRNAstrand forward \\ - -o "MAPQ3/\${outfile}_MAPQ3_fwd.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --ignoreDuplicates \\ - --normalizeUsing CPM \\ - --minMappingQuality 3 \\ - --filterRNAstrand reverse \\ - -o "MAPQ3/\${outfile}_MAPQ3_rev.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - - -# ...by excluding alignments less than MAPQ 30 ------------------------------- -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --ignoreDuplicates \\ - --normalizeUsing CPM \\ - --minMappingQuality 30 \\ - --filterRNAstrand forward \\ - -o "MAPQ30/\${outfile}_MAPQ30_fwd.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --ignoreDuplicates \\ - --normalizeUsing CPM \\ - --minMappingQuality 30 \\ - --filterRNAstrand reverse \\ - -o "MAPQ30/\${outfile}_MAPQ30_rev.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - -script -# vi "${s_name}" # :q - - -# Create an .bam array for generation of .bws ------------ -unset bams -typeset -a bams -while IFS=" " read -r -d $'\0'; do - bams+=( "${REPLY}" ) -done < <(\ - find "${HOME}/assess_transcriptome_assemblies/bams_merged_2022-1216" \ - -type l \ - \( \ - -name "*multi-hit-mode_1_*.bam" \ - -o -name "*multi-hit-mode_10_*.bam" \ - -o -name "*multi-hit-mode_100_*.bam" \ - -o -name "*multi-hit-mode_1000_*.bam" \ - \) \ - -print0 | \ - sort -z -) -echoTest "${bams[@]}" # It works! - - -# Submit the jobs ---------------------------------------- -echo "${s_name}" # submit_bamCoverage_param-ignoreDuplicates-TRUE.sh -for i in "${bams[@]}"; do - echo "sbatch ${s_name} ${i} $(basename "${i}" .bam)" - echo "" - - sbatch ${s_name} ${i} $(basename "${i}" .bam) - echo "" - echo "" - sleep 0.2 -done -``` -
-
-
- - -## Symlinking `.gff3`s for assessment, 2022-1214-1216 - -### The particular `.gff3`s and their details -
-Click to view code: Go to work directory, load environment, run `ls -1` on `files_PASA/` and `files_PASA_param_gene-overlap/` - -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 and corresponding defaults - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -Trinity_env - - -ls -1 files_PASA -ls -1 files_PASA_param_gene-overlap -``` -
-
- -
-Printed to terminal: Run `ls -1` - -Results of `ls -1 files_PASA` -```txt -trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local -trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -``` - -Results of `ls -1 files_PASA_param_gene-overlap` -```txt -trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd -trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd -trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd -trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local -trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local -trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local -``` -
-
- - -#### Get the absolute paths to the relevant `files_PAS*` `.gff3`s -
-Click to view code: Target `*.compreh_init_build/*.gff3`, then run `ls -1` - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd files_PASA/ -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA - -.,s -# NOTE 1/2 Inside each directory is a subdirectory with extension -#+ NOTE 2/2 .compreh_init_build: We need to target the .gff3 files in those - -cd .. -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -cd files_PASA_param_gene-overlap/ -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap - -.,s -# NOTE Same as above - -cd .. -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -files_PASA_param_F="/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA" -files_PASA_param_T="/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201/files_PASA_param_gene-overlap" - -ls -1 files_PASA/*/*.compreh_init_build/*.gff3 -ls -1 files_PASA_param_gene-overlap/*/*.compreh_init_build/*.gff3 -``` -
-
- -
-Printed to terminal: Run `ls -1` - -Results of `ls -1 files_PASA` -```txt -files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.compreh_init_build/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.compreh_init_build.gff3 -files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.compreh_init_build/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.compreh_init_build.gff3 -files_PASA/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.compreh_init_build/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.compreh_init_build.gff3 -files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.compreh_init_build/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.compreh_init_build.gff3 -files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.compreh_init_build/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.compreh_init_build.gff3 -files_PASA/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.compreh_init_build/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.compreh_init_build.gff3 -files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.compreh_init_build/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.compreh_init_build.gff3 -files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.compreh_init_build/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.compreh_init_build.gff3 -files_PASA/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.compreh_init_build/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.compreh_init_build.gff3 -``` - -Results of `ls -1 files_PASA_param_gene-overlap` -```txt -files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.compreh_init_build/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.compreh_init_build.gff3 -files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.compreh_init_build/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.compreh_init_build.gff3 -files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.compreh_init_build/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.compreh_init_build.gff3 -files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.compreh_init_build/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.compreh_init_build.gff3 -files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.compreh_init_build/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.compreh_init_build.gff3 -files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.compreh_init_build/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.compreh_init_build.gff3 -files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.compreh_init_build/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.compreh_init_build.gff3 -files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.compreh_init_build/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.compreh_init_build.gff3 -files_PASA_param_gene-overlap/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.compreh_init_build/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.compreh_init_build.gff3 -``` -
-
- - -### The actual symlinking - -#### Clean up the previous symlinks, which don't work for Alison -
-Click to view code: Go to work directory, check on things, then create symlinks - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -cd "${HOME}/tsukiyamalab/alisong" || \ - echo "cd'ing failed; check on this" - -# # 2022-1214 #OUTDATED ------------------------------------ -# # Reorganizationfor IGV experiments -- -# mkdir -p Kris/gtfs_2022-1214/ -# # mkdir: created directory 'Kris' -# # mkdir: created directory 'Kris/gtfs_2022-1214' -# -# mv Kris_bams/ bams_2022-1212/ && mv bams_2022-1212 Kris/ -# # renamed 'Kris_bams/' -> 'bams_2022-1212/' -# # renamed 'bams_2022-1212' -> 'Kris/bams_2022-1212' -# -# mv Kris_IGV_Sharing/ IGV_sharing/ && mv IGV_sharing/ Kris/ -# # renamed 'Kris_IGV_Sharing/' -> 'IGV_sharing/' -# # renamed 'IGV_sharing/' -> 'Kris/IGV_sharing' -# -# cd Kris/gtfs_2022-1214/ || \ -# echo "cd'ing failed; check on this" -# -# mkdir -p param_gene-overlap_{TRUE,FALSE} -# # mkdir: created directory 'param_gene-overlap_TRUE' -# # mkdir: created directory 'param_gene-overlap_FALSE' - -# 2022-1216 ---------------------------------------------- -cd assess_transcriptome_assemblies && ., -# total 203K -# drwxrws--- 5 kalavatt 93 Dec 16 08:08 ./ -# drwxrws--- 49 agreenla 3.2K Dec 15 09:21 ../ -# drwxrws--- 6 kalavatt 180 Dec 15 14:41 bams_2022-1212/ -# drwxrws--- 4 kalavatt 139 Dec 15 15:14 gtfs_2022-1214/ -# drwxrws--- 2 agreenla 1.5K Dec 15 09:41 IGV_sharing/ - -# Clean out and rename gtfs_*/ directory -cd gtfs_2022-1214 && .,s -#NOTE Too much to copy in - -ls -1 */*.gff3 -# param_gene-overlap_FALSE/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.compreh_init_build.gff3 -# param_gene-overlap_FALSE/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.compreh_init_build.gff3 -# param_gene-overlap_FALSE/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.compreh_init_build.gff3 -# param_gene-overlap_FALSE/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.compreh_init_build.gff3 -# param_gene-overlap_FALSE/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.compreh_init_build.gff3 -# param_gene-overlap_FALSE/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.compreh_init_build.gff3 -# param_gene-overlap_FALSE/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.compreh_init_build.gff3 -# param_gene-overlap_FALSE/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.compreh_init_build.gff3 -# param_gene-overlap_FALSE/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.compreh_init_build.gff3 -# param_gene-overlap_TRUE/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd.compreh_init_build.gff3 -# param_gene-overlap_TRUE/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd.compreh_init_build.gff3 -# param_gene-overlap_TRUE/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd.compreh_init_build.gff3 -# param_gene-overlap_TRUE/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_100_EndToEnd.compreh_init_build.gff3 -# param_gene-overlap_TRUE/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_10_EndToEnd.compreh_init_build.gff3 -# param_gene-overlap_TRUE/trinity_5781-5782_Q_IP_merged.trim.un_multi-hit-mode_1_EndToEnd.compreh_init_build.gff3 -# param_gene-overlap_TRUE/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_100_Local.compreh_init_build.gff3 -# param_gene-overlap_TRUE/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_10_Local.compreh_init_build.gff3 -# param_gene-overlap_TRUE/trinity_5781-5782_Q_IP_merged.un_multi-hit-mode_1_Local.compreh_init_build.gff3 - -# Unlink the .gff3 files -for i in */*.gff3; do - echo "Unlinking ${i}" - unlink "${i}" - echo "" -done -``` -
-
- - -#### Create symlinks that will work for Alison/other users -
-Click to view code: Rename/reorganize things, check on things, create symlinks - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -pwd -# /home/kalavatt/tsukiyamalab/alisong/assess_transcriptome_assemblies/gtfs_2022-1214 - -cd .. -# /home/kalavatt/tsukiyamalab/alisong/assess_transcriptome_assemblies/ - -mv gtfs_2022-1214 gff3s_2022-1214 - -cd gff3s_2022-1214 -# /home/kalavatt/tsukiyamalab/alisong/assess_transcriptome_assemblies/gff3s_2022-1214 - -# Make subdirectories for the two ways PASA was called -mkdir -p {param_gene-overlap_TRUE,param_gene-overlap_FALSE} - - -# Determine the relative paths from the present location --------------------- -#+ ...to the PASA outfile directories -find_relative_path() { - realpath --relative-to="${1}" "${2}" -} - - -rel_PASA_param_F="$(find_relative_path "$(pwd)/param_gene-overlap_FALSE" "${files_PASA_param_F}")" -rel_PASA_param_T="$(find_relative_path "$(pwd)/param_gene-overlap_TRUE" "${files_PASA_param_T}")" - -cd param_gene-overlap_FALSE && \ - ls -1 ${rel_PASA_param_F}/*/*.compreh_init_build/*.gff3 && \ - cd .. # It works! - -cd param_gene-overlap_TRUE && \ - ls -1 ${rel_PASA_param_T}/*/*.compreh_init_build/*.gff3 && \ - cd .. # It works! - -# # Check -# cd param_gene-overlap_FALSE -# for i in ${rel_PASA_param_F}/*/*.compreh_init_build/*.gff3 ${rel_PASA_param_T}/*/*.compreh_init_build/*.gff3; do -# echo "${i}" -# echo "$(basename "${i}")" -# echo "" -# done # It works! -# cd .. - - -# Files: param_gene-overlap_FALSE ---- -cd param_gene-overlap_FALSE || \ - echo "cd'ing failed; check on this" - -unset key_value_F -typeset -A key_value_F -for i in ${rel_PASA_param_F}/*/*.compreh_init_build/*.gff3; do - k="${i}" - v="$(basename "${i}")" - echo "${k}" - echo "${v}" - echo "" - - key_value_F["${k}"]+="${v}" -done - -for i in "${!key_value_F[@]}"; do - echo " Key: ${i}" - echo "Value: ${key_value_F[$i]}" - - ln -s "${i}" "${key_value_F[$i]}" - echo "" -done -., # It works! - - -# Files: param_gene-overlap_TRUE ----- -cd ../param_gene-overlap_TRUE || \ - echo "cd'ing failed; check on this" - -unset key_value_T -typeset -A key_value_T -for i in ${rel_PASA_param_T}/*/*.compreh_init_build/*.gff3; do - k="${i}" - v="$(basename "${i}")" - echo "${k}" - echo "${v}" - echo "" - - key_value_T["${k}"]+="${v}" -done - -for i in "${!key_value_T[@]}"; do - echo " Key: ${i}" - echo "Value: ${key_value_T[$i]}" - - ln -s "${i}" "${key_value_T[$i]}" - echo "" -done -., # It works! -``` -
-
-
- - -## Questions about `bamCoverage` - -### On `--filterRNAstrand` -```txt -Possible choices: forward, reverse - -Selects RNA-seq reads (single-end or paired-end) originating from genes on the given strand. This option assumes a standard dUTP-based library preparation (that is, –filterRNAstrand=forward keeps minus-strand reads, which originally came from genes on the forward strand using a dUTP-based method). Consider using –samExcludeFlag instead for filtering by strand in other contexts. -``` -Were our files made with a dUTP-based library preparation method? - -`#TODO` AG answered this in an email from sometime in mid-to-late December: Copy the answer in here - -In the `stdout.*.txt` files for the job submissions, we see that only some 30-50% of alignments are being used; the rest are being filtered out, even when we set `--minMappingQuality 0`. Is this normal? Can check these against the `*slurm.out` files from your previous runs of `bamCoverage`? -
-
- - -## Linking and/or symlinking to data galore, 2022-0103-0105 - -### The plan of attack -- To be specific, `#TODO` Symlink to `.bam`s, merged `.bam`s~~, and `.gff3`s~~ - + However, first, `#TODO` For all subdirectories and files in `files_PASA_rcor-only_*`, replace string "`trim-rcor`" with either "`rcor`" or "`rcor-only`" - + Put another way, `#TODO` After the completion of remaining jobs, rename appropriate '`trim-rcor`'/actually only '`rcor`' string-containing files; carefully determine the appropriate files before running anything - + Likewise, `#TODO` Determine the `MarkDown` notebooks and shell scripts in which the '`trim-rcor`' string should be replaced with the string '`rcor`', then make the appropriate changes -- When the above is completed, `#TODO` Create `.bw`s for the `.bam`s, i.e., both the individual and merged ones -- `#DONE` `2023-0104`: Have renamed, copied, and further renamed the `.gff3`s for use by Alison; it remains to... - + `#TODO` Symlink the individual and merged `.bam`s - + `#TODO` Create `.bw`s for `.bam`s - - -### Replace string "`trim-rcor`" with "`rcor`" in appropriate directories - -#### Grab a node, get to the work directory, and load the proper environment -
-Click to view code: Grab a node, get to the work directory, and load the proper environment - -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 and corresponding defaults - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -mwd - -Trinity_env -``` -
-
- - -#### Rename incorrectly labeled `*trim-rcor*` files to `*rcor*` - -##### Create arrays of specific, approrpiate files for renaming -
-Click to view code: Create arrays of specific, approrpiate files for renaming - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -unset directories -typeset -a directories -while IFS=" " read -r -d $'\0'; do - directories+=( "${REPLY}" ) -done < <(\ - find . \ - -maxdepth 2 \ - -type d \ - -name "*rcor-only*" \ - -not -path "./files_Trinity*" \ - -not -path "./files_processed-rcor-only" \ - -print0 \ - | sort -z -) -echoTest "${directories[@]}" -# ./files_PASA_rcor-only_gene-overlap-10.0 -# ./files_PASA_rcor-only_gene-overlap-20.0 -# ./files_PASA_rcor-only_gene-overlap-30.0 -# ./files_PASA_rcor-only_gene-overlap-40.0 -# ./files_PASA_rcor-only_gene-overlap-50.0 -# ./files_PASA_rcor-only_gene-overlap-60.0 -# ./files_PASA_rcor-only_gene-overlap-70.0 -# ./files_PASA_rcor-only_gene-overlap-80.0 -# ./files_PASA_rcor-only_gene-overlap-90.0 -# ./files_PASA_rcor-only_minimal-overlap -# ./files_PASA_rcor-only_stringent-alignment-overlap-10.0 -# ./files_PASA_rcor-only_stringent-alignment-overlap-20.0 -# ./files_PASA_rcor-only_stringent-alignment-overlap-30.0 -# ./files_PASA_rcor-only_stringent-alignment-overlap-40.0 -# ./files_PASA_rcor-only_stringent-alignment-overlap-50.0 -# ./files_PASA_rcor-only_stringent-alignment-overlap-60.0 -# ./files_PASA_rcor-only_stringent-alignment-overlap-70.0 -# ./files_PASA_rcor-only_stringent-alignment-overlap-80.0 -# ./files_PASA_rcor-only_stringent-alignment-overlap-90.0 -``` -
-
- -- `#TODO` Need to do something like the above for "`./files_Trinity*`" "`./files_processed-rcor-only`" -- `#IMPORTANT` `2023-0104`: Don't forget the above `#TODO` - - -##### Use the arrays to rename appropriate files -`#NOTE` Here, I ended up pursuing a tact in which we rename directories in order of top-to-bottom hierarchy; once that's done, move on to renaming the individual files; if renaming is not done in this order, then directory names will change prior to file names, thereby breaking the paths to access the files; errors will be thrown - -
-Click to view code: Use the arrays to rename appropriate files - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Rename the directories: -maxdepth 1 -for i in "${directories[@]}"; do - unset tmp - typeset -a tmp - while IFS=" " read -r -d $'\0'; do - tmp+=( "${REPLY}" ) - done < <(\ - find "${i}" \ - -maxdepth 1 \ - -type d \ - -name "*trim-rcor*" \ - -print0 \ - | sort -z \ - ) - # echoTest "${tmp[@]}" - for i in "${tmp[@]}"; do - rename 's/trim-rcor/rcor/g' "${i}" - done -done - -# Rename the directories: -maxdepth 2 -for i in "${directories[@]}"; do - unset tmp - typeset -a tmp - while IFS=" " read -r -d $'\0'; do - tmp+=( "${REPLY}" ) - done < <(\ - find "${i}" \ - -maxdepth 2 \ - -type d \ - -name "*trim-rcor*" \ - -print0 \ - | sort -z \ - ) - # echoTest "${tmp[@]}" - for i in "${tmp[@]}"; do - rename 's/trim-rcor/rcor/g' "${i}" - done -done - -# Rename the files -for i in "${directories[@]}"; do - unset tmp - typeset -a tmp - while IFS=" " read -r -d $'\0'; do - tmp+=( "${REPLY}" ) - done < <(\ - find "${i}" \ - -type f \ - -name "*trim-rcor*" \ - -print0 \ - | sort -z \ - ) - # echoTest "${tmp[@]}" - for i in "${tmp[@]}"; do - rename 's/trim-rcor/rcor/g' "${i}" - done -done -``` -
-
- - -### Copy/rename (and rename some more) for use by Alison - -#### Get files of interest into arrays -
-Click to view code: Get files of interest into arrays - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# First, work with the .gff3s from rcor-only-processed datasets -unset gff3s_rcor -typeset -a gff3s_rcor -while IFS=" " read -r -d $'\0'; do - gff3s_rcor+=( "${REPLY}" ) -done < <(\ - find "./files_PASA_rcor-only_"*"/trinity_5781-5782_Q_IP_merged."*"/"*".compreh_init_build/" \ - -type f \ - -name "*.gff3" \ - -print0 \ - | sort -z -) -echoTest "${gff3s_rcor[@]}" -echo "${#gff3s_rcor[@]}" - -# Next, work with the other .gff3s, i.e., those with no processing, -#+ trim-galore processing, and rcor-trim-galore-combined processing -unset gff3s_other -typeset -a gff3s_other -while IFS=" " read -r -d $'\0'; do - gff3s_other+=( "${REPLY}" ) -done < <(\ - find "./files_PASA_un_trim_trim-rcor_"*"/trinity_5781-5782_Q_IP_merged."*"/"*".compreh_init_build/" \ - -type f \ - -name "*.gff3" \ - -print0 \ - | sort -z -) -echoTest "${gff3s_other[@]}" -echo "${#gff3s_other[@]}" -``` -
-
- - -#### Copy/rename files of interest into the "assessment" directory -
-Click to view code: Copy/rename files of interest into the "assessment" directory - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -count=1 -for i in "${gff3s_rcor[@]}"; do - # i="${gff3s_rcor[0]}" # echo "${i}" - - # Extract a string from a parent of parent of parent (greatgrandparent) - #+ directory to be appended to the child filename when copying - greatgrandparent="$(\ - basename "$(dirname "$(dirname "$(dirname "${i}")")")" \ - | awk -F '_' '{$1=""; print $0}' \ - | sed 's/^ *//g' \ - | tr -s ' ' '_'\ - )" - # echo "${greatgrandparent}" - child="$(basename "${i}")" # echo "${child}" - new_child="${greatgrandparent}_${child}" # echo "${new_child}" - - # Copy to 'gff3s_2023-0103/' in - #+ 'tsukiyamalab/alisong/assess_transcriptome_assemblies/'; it's already - #+ been mkdir'd - path_new_child="tsukiyamalab/alisong/assess_transcriptome_assemblies/gff3s_2023-0103" - - echo "${count}" - # echo "cp -- ${i} ${HOME}/${path_new_child}/${new_child}" #TEST - cp -- "${i}" "${HOME}/${path_new_child}/${new_child}" - count=$(( count + 1 )) - echo "" -done -# 228 - -count=1 -for i in "${gff3s_other[@]}"; do - # i="${gff3s_other[0]}" # echo "${i}" - - # Extract a string from a parent of parent of parent (greatgrandparent) - #+ directory to be appended to the child filename when copying - greatgrandparent="$(\ - basename "$(dirname "$(dirname "$(dirname "${i}")")")" \ - | awk -F '_' '{$1=""; print $0}' \ - | sed 's/^ *//g' \ - | tr -s ' ' '_'\ - )" - # echo "${greatgrandparent}" - child="$(basename "${i}")" # echo "${child}" - new_child="${greatgrandparent}_${child}" # echo "${new_child}" - - # Copy to 'gff3s_2023-0103/' in - #+ 'tsukiyamalab/alisong/assess_transcriptome_assemblies/'; it's already - #+ been mkdir'd - path_new_child="tsukiyamalab/alisong/assess_transcriptome_assemblies/gff3s_2023-0103" - - echo "${count}" - # echo "cp -- ${i} ${HOME}/${path_new_child}/${new_child}" #TEST - cp -- "${i}" "${HOME}/${path_new_child}/${new_child}" - count=$(( count + 1 )) - echo "" -done -# 171 - -# There are two loops above, one for each array, because I was not sure if I -#+ would need to do different text processing for the filenames in the two -#+ arrays; it turns out I don't need to do that, so I can use a single loop, -#+ instead of the two identical loops, in the future - -# Tally the total number of files copied -echo $(( 228 + 171 )) -# 399 -``` -
-
- - -#### In the "assignment" directory, do additional renaming work -...to make file identities clearer - -
-Click to view code: In the "assignment" directory, do additional renaming work - -```bash -cd -- ~/tsukiyamalab/alisong/assess_transcriptome_assemblies/gff3s_2023-0103 - -for i in *.trim-rcor.*; do - # echo "${i}" - # rename -n 's/PASA_un_trim_trim-rcor_/PASA_trim-rcor_/g' "${i}" #TEST - rename 's/PASA_un_trim_trim-rcor_/PASA_trim-rcor_/g' "${i}" -done - -for i in *.trim.un_*; do - # echo "${i}" - # rename -n 's/PASA_un_trim_trim-rcor_/PASA_trim-only_/g' "${i}" #TEST - rename 's/PASA_un_trim_trim-rcor_/PASA_trim-only_/g' "${i}" -done - -for i in *_merged.un_*; do - # echo "${i}" - # rename -n 's/PASA_un_trim_trim-rcor_/PASA_unprocessed_/g' "${i}" #TEST - rename 's/PASA_un_trim_trim-rcor_/PASA_unprocessed_/g' "${i}" -done - -for i in *.trim-rcor.*; do - # echo "${i}" - # rename -n 's/\.trim-rcor\./\./g' "${i}" #TEST - rename 's/\.trim-rcor\./\./g' "${i}" -done - -for i in *.trim.un_*; do - # echo "${i}" - # rename -n 's/\.trim\.un_/\./g' "${i}" #TEST - rename 's/\.trim\.un_/\./g' "${i}" -done - -for i in *_merged.un_*; do - # echo "${i}" - # rename -n 's/\.un_/\./g' "${i}" #TEST - rename 's/\.un_/\./g' "${i}" -done - -for i in *.rcor.*; do - # echo "${i}" - # rename -n 's/\.rcor\./\./g' "${i}" #TEST - rename 's/\.rcor\./\./g' "${i}" -done -``` -
-
- - -### Rename "`trim-rcor`" strings to "`rcor`" in "`./files_Trinity*`", "`./files_processed-rcor-only`" -
-Click to view code: Get into work directory, load environment, etc. - -```bash -#!/bin/bash -#DONTRUN - - -# Move to work directory, establish work environment ------------------------- -grabnode # 1 and corresponding defaults -Trinity_env - -mwd() { - transcriptome \ - && cd "./results/2022-1201" \ - || echo "cd'ing failed; check on this" -} - - -awd() { - ~/assess_transcriptome_assemblies \ - || echo "cd'ing failed; check on this" -} - - -mwd -# awd -``` -
-
- - -#### Get directories of interest into arrays, then rename them as appropriate - -#### Work with "`./files_Trinity*`" -
-Click to view code: Get directories of interest into arrays, then rename directories as appropriate; afterwards, rename files in directories/subdirectories as appropriate - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -unset directories -typeset -a directories -while IFS=" " read -r -d $'\0'; do - directories+=( "${REPLY}" ) -done < <(\ - find "./files_Trinity"*"/files_processed-rcor-only" \ - -maxdepth 1 \ - -type d \ - -name "*trim-rcor*" \ - -print0 \ - | sort -z -) -echoTest "${directories[@]}" -# ./files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -# ./files_Trinity_genome-free/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local -# ./files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_EndToEnd -# ./files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_100_Local -# ./files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_EndToEnd -# ./files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_10_Local -# ./files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_EndToEnd -# ./files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_15_Local -# ./files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_EndToEnd -# ./files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_1_Local -# ./files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_EndToEnd -# ./files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_50_Local -# ./files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_EndToEnd -# ./files_Trinity_genome-guided/files_processed-rcor-only/trinity_5781-5782_Q_IP_merged.trim-rcor.multi-hit-mode_5_Local - -# Rename the directories -for i in "${directories[@]}"; do - # rename -n 's/trim-rcor/rcor/g' "${i}" - rename 's/trim-rcor/rcor/g' "${i}" -done - -# Now that the directories are renamed, update the array -unset directories -typeset -a directories -while IFS=" " read -r -d $'\0'; do - directories+=( "${REPLY}" ) -done < <(\ - find "./files_Trinity"*"/files_processed-rcor-only" \ - -maxdepth 1 \ - -type d \ - -name "*rcor*" \ - -print0 \ - | sort -z -) -echoTest "${directories[@]}" - -# Identify subdirectories to rename, then do so -for i in "${directories[@]}"; do - unset tmp - typeset -a tmp - while IFS=" " read -r -d $'\0'; do - tmp+=( "${REPLY}" ) - done < <(\ - find "${i}" \ - -maxdepth 1 \ - -type d \ - -name "*trim-rcor*" \ - -print0 \ - | sort -z \ - ) - # echoTest "${tmp[@]}" - for i in "${tmp[@]}"; do - # rename -n 's/trim-rcor/rcor/g' "${i}" - rename 's/trim-rcor/rcor/g' "${i}" - done -done - -# Check to ensure that the subdirectories were renamed -for i in "${directories[@]}"; do - unset tmp - typeset -a tmp - while IFS=" " read -r -d $'\0'; do - tmp+=( "${REPLY}" ) - done < <(\ - find "${i}" \ - -maxdepth 1 \ - -type d \ - -name "*rcor*" \ - -print0 \ - | sort -z \ - ) - echoTest "${tmp[@]}" -done - -# Are there sub-subdirectories that need to be renamed? If so, then do so -for i in "${directories[@]}"; do - unset tmp - typeset -a tmp - while IFS=" " read -r -d $'\0'; do - tmp+=( "${REPLY}" ) - done < <(\ - find "${i}" \ - # -maxdepth 2 \ - -maxdepth 3 \ - -type d \ - -name "*trim-rcor*" \ - -print0 \ - | sort -z \ - ) - echoTest "${tmp[@]}" - # for i in "${tmp[@]}"; do - # rename -n 's/trim-rcor/rcor/g' "${i}" - # # rename 's/trim-rcor/rcor/g' "${i}" - # done -done -#NOTE 1/2 There appear to be none (testing -maxdepth 2 and 3), so move on to -#NOTE 2/2 renaming files - -# Rename files in subdirectories -for i in "${directories[@]}"; do - unset tmp - typeset -a tmp - while IFS=" " read -r -d $'\0'; do - tmp+=( "${REPLY}" ) - done < <(\ - find "${i}" \ - -maxdepth 1 \ - -type d \ - -name "*rcor*" \ - -print0 \ - | sort -z \ - ) - # echoTest "${tmp[@]}" - - for j in "${tmp[@]}"; do - # j="${tmp[0]}" # echo "${j}" - unset tmp_2 - typeset -a tmp_2 - while IFS=" " read -r -d $'\0'; do - tmp_2+=( "${REPLY}" ) - done < <(\ - find "${j}" \ - -maxdepth 1 \ - -type f \ - -name "*rcor*" \ - -print0 \ - | sort -z \ - ) - # echoTest "${tmp_2[@]}" - for i in "${tmp_2[@]}"; do - # rename -n 's/trim-rcor/rcor/g' "${i}" - rename 's/trim-rcor/rcor/g' "${i}" - done - done -done -#NOTE 1/2 This should handle everything; to check on this, do some spot checks -#NOTE 2/2 in the subdirectories - -#NOTE Sure enough, everything is addressed -``` -
-
- - -#### Work with "`./files_processed-rcor-only`" - -##### Notes -
-Click to view notes - -In `./files_processed-rcor-only`, we have the following subdirectories: -- `bam_rcor-cor/` -- `bam_rcor-cor_split/` -- `bam_rcor-cor_split_merge/` -- `fastq_rcor/` -- `fastq_rcor-cor/` -- `fastq_rcor-cor_split/` - -Of these subdirectories, the following contain *sub-subdirectories* that need to be renamed: -- `./bam_rcor-cor/EndToEnd/` -- `./bam_rcor-cor/Local/` - -Of these subdirectories, the following contain *files* that need to be renamed: -- `./bam_rcor-cor_split/EndToEnd/` -- `./bam_rcor-cor_split/Local/` -- `./bam_rcor-cor_split_merge/EndToEnd/` -- `./bam_rcor-cor_split_merge/Local/` -- `./fastq_rcor-cor_split/EndToEnd` -- `./fastq_rcor-cor_split/Local` - -Once the *sub-subdirectories* are renamed, there are files in each that need to be renamed too -
-
- - -##### Code to accomplish the above -
-Click to view code: Get directories of interest into arrays, then rename directories as appropriate; afterwards, rename files in directories/subdirectories as appropriate - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Rename appropriate subdirectories -unset subdirectories -typeset -a subdirectories -while IFS=" " read -r -d $'\0'; do - subdirectories+=( "${REPLY}" ) -done < <(\ - find "./files_processed-rcor-only/bam_rcor-cor/"*"/" \ - -maxdepth 1 \ - -type d \ - -name "*trim-rcor*" \ - -print0 \ - | sort -z -) -echoTest "${subdirectories[@]}" - -for i in "${subdirectories[@]}"; do - # rename -n 's/trim-rcor/rcor/g' "${i}" - rename 's/trim-rcor/rcor/g' "${i}" -done - -# With all subdirectories appropriately named, rename files -unset files -typeset -a files -while IFS=" " read -r -d $'\0'; do - files+=( "${REPLY}" ) -done < <(\ - find "./files_processed-rcor-only/"* \ - -maxdepth 4 \ - -type f \ - -name "*trim-rcor*" \ - -print0 \ - | sort -z -) -echoTest "${files[@]}" - -for i in "${files[@]}"; do - # rename -n 's/trim-rcor/rcor/g' "${i}" - rename 's/trim-rcor/rcor/g' "${i}" -done -#NOTE 1/2 This should handle everything; to check on this, do some spot checks -#NOTE 2/2 in the subdirectories - -#NOTE Sure enough, everything is addressed -``` -
-
- -OK, now we're ready to symlink `.bam`s and perform subsequent steps - - -### Symlink to the individual and merged `.bam`s, renaming them for easy use by Alison - -#### Create an array of appropriate `.bam`s -
-Click to view code: Get appropriate .bams of interest into an array - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - -unset bams -typeset -a bams -while IFS=" " read -r -d $'\0'; do - bams+=( "${REPLY}" ) -done < <(\ - find "./files_processed-rcor-only" \ - -type f \ - -name "*rcor*.bam" \ - -print0 \ - | sort -z -) -echoTest "${bams[@]}" -echo "${#bams[@]}" -``` -
-
- - -#### Clean up/set up '`awd`', then symlink the `.bam`s -
-Click to view code: Clean up/set up 'awd', then symlink the .bams - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Get to the proper wd ------------------------------------------------------- -awd -# cd -- /home/kalavatt/assess_transcriptome_assemblies - -., -# total 747K -# drwxrws--- 10 kalavatt 276 Jan 5 09:58 ./ -# drwxrws--- 49 agreenla 2.4K Jan 3 12:14 ../ -# drwxrws--- 5 kalavatt 149 Dec 28 10:18 bams_2022-1212/ -# drwxrws--- 5 kalavatt 94 Dec 28 10:18 bams_merged_2022-1216/ -# drwxrws--- 5 agreenla 116 Dec 28 10:18 bws_2022-1215/ -# drwxrws--- 4 kalavatt 91 Dec 16 10:49 bws_merged_2022-1216/ -# drwxrws--- 5 kalavatt 114 Jan 5 10:15 gff3s_2022-1214/ -# drwxrws--- 11 agreenla 622 Dec 28 10:18 gff3s_2022-1222_email-from-Kris/ -# drwxrws--- 5 kalavatt 54K Jan 5 09:59 gff3s_2023-0103/ -# drwxrws--- 3 agreenla 32 Jan 5 10:15 IGV/ - -mv bams_2022-1212/ bams_individual_2022-1212/ -# renamed 'bams_2022-1212/' -> 'bams_individual_2022-1212/' - -mkdir -p bams_individual_merged_2023-0105/ - -# Determine the relative paths from the present location --------------------- -#+ ...to the bam directories -pwd -# /home/kalavatt/assess_transcriptome_assemblies/bams_individual_merged_2023-0105 - -find_relative_path() { - realpath --relative-to="${1}" "${2}" -} - - -# Symlink to the files ------------------------------------------------------- -p_part="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" -for i in "${bams[@]}"; do - # i="${bams[0]}" # echo "${i}" - # dirname "${i}" - - # # Working things out... - # find_relative_path "${p_part}/${i}" "$(pwd)" #REVERSED - # find_relative_path "$(dirname "${p_part}/${i}")" "$(pwd)" #REVERSED - # ., "$(find_relative_path "$(pwd)" "${p_part}/${i}")" #FAILS - # ., "$(find_relative_path "$(pwd)" "$(dirname "${p_part}/${i}")")" #WORKS - - p_rel="$(find_relative_path "$(pwd)" "$(dirname "${p_part}/${i}")")" # echo "${p_rel}" - f_base="$(basename "${i}")" # echo "${f_base}" - ln -sf "${p_rel}/${f_base}" "${f_base}" -done -``` -
-
- - -#### Create an array of appropriate `.bai`s and symlink them -
-Click to view code: Symlink the .bais - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - - -# Get into the proper wd ----------------------------------------------------- -mwd && pwd -# /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201 - - -# Make an array fro .bais ---------------------------------------------------- -unset bais -typeset -a bais -while IFS=" " read -r -d $'\0'; do - bais+=( "${REPLY}" ) -done < <(\ - find "./files_processed-rcor-only" \ - -type f \ - -name "*rcor*.bai" \ - -print0 \ - | sort -z -) -echoTest "${bais[@]}" -echo "${#bais[@]}" - - -# Get to the proper wd ------------------------------------------------------- -awd -# cd -- /home/kalavatt/assess_transcriptome_assemblies - -cd -- bams_individual_merged_2023-0105/ -# /home/kalavatt/assess_transcriptome_assemblies/bams_individual_merged_2023-0105 - - -# Determine the relative paths from the present location --------------------- -#+ ...to the bam directories -pwd -# /home/kalavatt/assess_transcriptome_assemblies/bams_individual_merged_2023-0105 - -find_relative_path() { - realpath --relative-to="${1}" "${2}" -} - - -# Symlink to the files ------------------------------------------------------- -p_part="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2022-1201" -for i in "${bais[@]}"; do - p_rel="$(find_relative_path "$(pwd)" "$(dirname "${p_part}/${i}")")" # echo "${p_rel}" - f_base="$(basename "${i}")" # echo "${f_base}" - ln -sf "${p_rel}/${f_base}" "${f_base}" -done -``` -
-
- - -### Generate `.bw`s for the `.bam`s -
-Click to view code: Generate .bws for the .bams - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - - -pwd -# /home/kalavatt/assess_transcriptome_assemblies/bams_individual_merged_2023-0105 - -cd .. && ., -# total 987K -# drwxrws--- 11 kalavatt 337 Jan 5 11:32 ./ -# drwxrws--- 49 agreenla 2.4K Jan 3 12:14 ../ -# drwxrws--- 5 kalavatt 149 Dec 28 10:18 bams_individual_2022-1212/ -# drwxrws--- 2 kalavatt 30K Jan 5 13:47 bams_individual_merged_2023-0105/ -# drwxrws--- 5 kalavatt 94 Dec 28 10:18 bams_merged_2022-1216/ -# drwxrws--- 5 agreenla 116 Dec 28 10:18 bws_2022-1215/ -# drwxrws--- 4 kalavatt 91 Dec 16 10:49 bws_merged_2022-1216/ -# drwxrws--- 5 kalavatt 114 Jan 5 10:15 gff3s_2022-1214/ -# drwxrws--- 11 agreenla 622 Dec 28 10:18 gff3s_2022-1222_email-from-Kris/ -# drwxrws--- 5 kalavatt 54K Jan 5 09:59 gff3s_2023-0103/ -# drwxrws--- 3 agreenla 32 Jan 5 10:15 IGV/ - -mv bws_2022-1215/ bws_individual_2022-1215/ -# renamed 'bws_2022-1215/' -> 'bws_individual_2022-1215/' - -mkdir -p bws_individual_merged_2023-0105/err_out -cd bws_individual_merged_2023-0105/ -# /home/kalavatt/assess_transcriptome_assemblies/bws_individual_merged_2023-0105 - - -# Generate .bws from the merged .bams that have been symlinked --------------- -#NOTE Not using parameter --ignoreDuplicates - -# Make a job submission script --------------------------- -s_name="submit_bamCoverage.sh" - -if [[ -f "${s_name}" ]]; then rm "${s_name}"; fi -cat << script > "${s_name}" -#!/bin/bash - -#SBATCH --nodes=1 -#SBATCH --cpus-per-task=8 -#SBATCH --error=./err_out/stderr.${s_name}.%J.txt -#SBATCH --output=./err_out/stdout.${s_name}.%J.txt - -# ${s_name} -# AG, KA -# $(date '+%Y-%m%d') - -# module load deepTools - -infile="\${1}" -outfile="\${2}" - -# Make directories for outfiles -mkdir -p {MAPQ0,MAPQ3,MAPQ30} - - -# --------------------------------------------------------------------------- -# Run bamCoverage ------------------------------------------------------------ -# --------------------------------------------------------------------------- - -# ...with no MAPQ filtering ------------------------------------------------- -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --filterRNAstrand forward \\ - -o "MAPQ0/\${outfile}_MAPQ0_fwd.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - -bamCoverage \\ - -p \${SLURM_CPUS_ON_NODE} \\ - -b "\${infile}" \\ - --normalizeUsing CPM \\ - --filterRNAstrand reverse \\ - -o "MAPQ0/\${outfile}_MAPQ0_rev.bw" -echo "" | tee >(cat >&2) -echo "" | tee >(cat >&2) - - -# # ...by excluding alignments less than MAPQ 3 -------------------------------- -# bamCoverage \\ -# -p \${SLURM_CPUS_ON_NODE} \\ -# -b "\${infile}" \\ -# --normalizeUsing CPM \\ -# --minMappingQuality 3 \\ -# --filterRNAstrand forward \\ -# -o "MAPQ3/\${outfile}_MAPQ3_fwd.bw" -# echo "" | tee >(cat >&2) -# echo "" | tee >(cat >&2) -# -# bamCoverage \\ -# -p \${SLURM_CPUS_ON_NODE} \\ -# -b "\${infile}" \\ -# --normalizeUsing CPM \\ -# --minMappingQuality 3 \\ -# --filterRNAstrand reverse \\ -# -o "MAPQ3/\${outfile}_MAPQ3_rev.bw" -# echo "" | tee >(cat >&2) -# echo "" | tee >(cat >&2) -# -# -# # ...by excluding alignments less than MAPQ 30 ------------------------------- -# bamCoverage \\ -# -p \${SLURM_CPUS_ON_NODE} \\ -# -b "\${infile}" \\ -# --normalizeUsing CPM \\ -# --minMappingQuality 30 \\ -# --filterRNAstrand forward \\ -# -o "MAPQ30/\${outfile}_MAPQ30_fwd.bw" -# echo "" | tee >(cat >&2) -# echo "" | tee >(cat >&2) -# -# bamCoverage \\ -# -p \${SLURM_CPUS_ON_NODE} \\ -# -b "\${infile}" \\ -# --normalizeUsing CPM \\ -# --minMappingQuality 30 \\ -# --filterRNAstrand reverse \\ -# -o "MAPQ30/\${outfile}_MAPQ30_rev.bw" -# echo "" | tee >(cat >&2) -# echo "" | tee >(cat >&2) - -script -# vi "${s_name}" # :q - -# Create an .bam array for generation of .bws ------------ -unset bams -typeset -a bams -while IFS=" " read -r -d $'\0'; do - bams+=( "${REPLY}" ) -done < <(\ - find "${HOME}/assess_transcriptome_assemblies/bams_individual_merged_2023-0105" \ - -type l \ - -name "*.sc_all.bam" \ - -print0 | \ - sort -z -) -echoTest "${bams[@]}" # It works! -echo "${#bams[@]}" -# 168 - -# Submit the jobs ---------------------------------------- -# echo "${s_name}" # submit_bamCoverage.sh -for i in "${bams[@]}"; do - echo "sbatch ${s_name} ${i} $(basename "${i}" .bam)" - echo "" - - sbatch ${s_name} ${i} $(basename "${i}" .bam) - echo "" - echo "" - sleep 0.1 -done - -rmdir MAPQ3/ MAPQ30/ -``` -
-
diff --git a/results/2023-0218/notebook/KA.2023-0222.presentation.alignment-metrics.mkc-1-32.png b/results/2023-0218/notebook/KA.2023-0222.presentation.alignment-metrics.mkc-1-32.png deleted file mode 100644 index 4c632e0..0000000 Binary files a/results/2023-0218/notebook/KA.2023-0222.presentation.alignment-metrics.mkc-1-32.png and /dev/null differ diff --git a/results/2023-0218/notebook/KA.2023-0222.presentation.basic-metrics.mkc-1-32.png b/results/2023-0218/notebook/KA.2023-0222.presentation.basic-metrics.mkc-1-32.png deleted file mode 100644 index 2774274..0000000 Binary files a/results/2023-0218/notebook/KA.2023-0222.presentation.basic-metrics.mkc-1-32.png and /dev/null differ diff --git a/results/2023-0218/notebook/KA.2023-0222.presentation.cumulative-transcript-matched-fraction-histogram.png b/results/2023-0218/notebook/KA.2023-0222.presentation.cumulative-transcript-matched-fraction-histogram.png deleted file mode 100644 index 383a869..0000000 Binary files a/results/2023-0218/notebook/KA.2023-0222.presentation.cumulative-transcript-matched-fraction-histogram.png and /dev/null differ diff --git a/results/2023-0218/notebook/KA.2023-0222.presentation.ex_poor-performance.png b/results/2023-0218/notebook/KA.2023-0222.presentation.ex_poor-performance.png deleted file mode 100644 index db92a65..0000000 Binary files a/results/2023-0218/notebook/KA.2023-0222.presentation.ex_poor-performance.png and /dev/null differ diff --git a/results/2023-0218/notebook/KA.2023-0222.presentation.pptx b/results/2023-0218/notebook/KA.2023-0222.presentation.pptx deleted file mode 100644 index 94f5606..0000000 Binary files a/results/2023-0218/notebook/KA.2023-0222.presentation.pptx and /dev/null differ diff --git a/results/2023-0218/notebook/rnaQUAST.short_report.Trinity-GG.Q_N.pilot-285.xlsx b/results/2023-0218/notebook/rnaQUAST.short_report.Trinity-GG.Q_N.pilot-285.xlsx deleted file mode 100644 index 3d19b92..0000000 Binary files a/results/2023-0218/notebook/rnaQUAST.short_report.Trinity-GG.Q_N.pilot-285.xlsx and /dev/null differ diff --git a/results/2023-0218/study_run_DETONATE.md b/results/2023-0218/study_run_DETONATE.md deleted file mode 100644 index 2433230..0000000 --- a/results/2023-0218/study_run_DETONATE.md +++ /dev/null @@ -1,734 +0,0 @@ - -`#study_DETONATE.md` -
-
- -
-Table of contents - - -1. [Install DETONATE, check on and install dependencies](#install-detonate-check-on-and-install-dependencies) - 1. [Code](#code) - 1. [Printed](#printed) -1. [Breaking down the DETONATE vignette](#breaking-down-the-detonate-vignette) - 1. [I Run RSEM-EVAL on each assembly](#i-run-rsem-eval-on-each-assembly) - 1. [Breakdown the command-line call](#breakdown-the-command-line-call) - 1. [II Run RSEM-EVAL on each assembly](#ii-run-rsem-eval-on-each-assembly) -1. [etc.](#etc) -1. [Miscellaneous](#miscellaneous) - - -
-
- - -## Install DETONATE, check on and install dependencies - -### Code -
-Code: Install DETONATE, check on and install dependencies - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -conda create -n detonate_env -c bioconda detonate -# UnsatisfiableError: The following specifications were found to be incompatible with your system: -# -# - feature:/linux-64::__glibc==2.27=0 -# - detonate -> libgcc-ng[version='>=4.9'] -> __glibc[version='>=2.17'] -# -# Your installed version is: 2.27 - - -conda activate detonate_env -which bowtie # Not found -which bowtie2 # Not found -which rsem # Not found - -# Try tab completion options for 'rse' (reported below) - -``` -
-
- - -### Printed -
-Printed (local installation): Install DETONATE, check on and install dependencies - -```txt - - __ __ __ __ - / \ / \ / \ / \ - / \/ \/ \/ \ -███████████████/ /██/ /██/ /██/ /████████████████████████ - / / \ / \ / \ / \ \____ - / / \_/ \_/ \_/ \ o \__, - / _/ \_____/ ` - |/ - ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ - ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ - ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ - ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ - ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ - ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝ - - mamba (0.25.0) supported by @QuantStack - - GitHub: https://github.com/mamba-org/mamba - Twitter: https://twitter.com/QuantStack - -█████████████████████████████████████████████████████████████ - - -Looking for: ['detonate'] - -bioconda/osx-64 3.8MB @ 3.2MB/s 1.3s -bioconda/noarch 4.2MB @ 3.2MB/s 1.4s -pkgs/r/osx-64 No change -pkgs/r/noarch No change -pkgs/main/osx-64 4.9MB @ 3.3MB/s 1.6s -pkgs/main/noarch 819.1kB @ 478.7kB/s 0.3s -conda-forge/noarch 11.3MB @ 4.5MB/s 2.8s -conda-forge/osx-64 26.9MB @ 4.6MB/s 6.6s -Transaction - - Prefix: /Users/kalavattam/miniconda3/envs/detonate_env - - Updating specs: - - - detonate - - - Package Version Build Channel Size -────────────────────────────────────────────────────────────────────────────────────── - Install: -────────────────────────────────────────────────────────────────────────────────────── - - + boost 1.66.0 py27_1 conda-forge/osx-64 305kB - + boost-cpp 1.66.0 1 conda-forge/osx-64 18MB - + bzip2 1.0.8 h0d85af4_4 conda-forge/osx-64 Cached - + c-ares 1.18.1 h0d85af4_0 conda-forge/osx-64 Cached - + ca-certificates 2022.12.7 h033912b_0 conda-forge/osx-64 Cached - + certifi 2019.11.28 py27h8c360ce_1 conda-forge/osx-64 Cached - + curl 7.76.1 h06286d4_1 conda-forge/osx-64 Cached - + detonate 1.11 h4b68e70_3 bioconda/osx-64 1MB - + icu 58.2 h0a44026_1000 conda-forge/osx-64 23MB - + krb5 1.17.1 h1752a42_0 conda-forge/osx-64 1MB - + libblas 3.9.0 16_osx64_openblas conda-forge/osx-64 Cached - + libcblas 3.9.0 16_osx64_openblas conda-forge/osx-64 Cached - + libcurl 7.76.1 h8ef9fac_1 conda-forge/osx-64 Cached - + libcxx 14.0.6 hccf4f1f_0 conda-forge/osx-64 Cached - + libedit 3.1.20170329 0 conda-forge/osx-64 159kB - + libev 4.33 haf1e3a3_1 conda-forge/osx-64 Cached - + libffi 3.2.1 1 bioconda/osx-64 Cached - + libgfortran 5.0.0 11_3_0_h97931a8_27 conda-forge/osx-64 Cached - + libgfortran5 11.3.0 h082f757_27 conda-forge/osx-64 Cached - + liblapack 3.9.0 16_osx64_openblas conda-forge/osx-64 Cached - + libnghttp2 1.47.0 h942079c_0 conda-forge/osx-64 Cached - + libopenblas 0.3.21 openmp_h429af6e_3 conda-forge/osx-64 Cached - + libssh2 1.10.0 h52ee1ee_2 conda-forge/osx-64 Cached - + libzlib 1.2.11 h6c3fc93_1014 conda-forge/osx-64 Cached - + llvm-openmp 15.0.7 h61d9ccf_0 conda-forge/osx-64 Cached - + ncurses 5.9 10 conda-forge/osx-64 1MB - + numpy 1.16.5 py27hde6bac1_0 conda-forge/osx-64 Cached - + openssl 1.1.1t hfd90126_0 conda-forge/osx-64 2MB - + perl 5.32.1 2_h0d85af4_perl5 conda-forge/osx-64 Cached - + pip 20.1.1 pyh9f0ad1d_0 conda-forge/noarch Cached - + python 2.7.15 h932b40d_1008 conda-forge/osx-64 13MB - + python_abi 2.7 1_cp27m conda-forge/osx-64 4kB - + readline 7.0 0 conda-forge/osx-64 392kB - + samtools 1.3 h7b56a33_5 bioconda/osx-64 462kB - + setuptools 44.0.0 py27_0 conda-forge/osx-64 Cached - + sqlite 3.26.0 ha441bb4_0 pkgs/main/osx-64 1MB - + tk 8.6.12 h5dbffcc_0 conda-forge/osx-64 Cached - + wheel 0.37.1 pyhd8ed1ab_0 conda-forge/noarch Cached - + xz 5.2.6 h775f41a_0 conda-forge/osx-64 Cached - + zlib 1.2.11 h6c3fc93_1014 conda-forge/osx-64 Cached - - Summary: - - Install: 40 packages - - Total download: 62MB - -────────────────────────────────────────────────────────────────────────────────────── - -Confirm changes: [Y/n] Y -libedit 158.8kB @ 542.7kB/s 0.3s -readline 392.2kB @ 1.2MB/s 0.3s -python_abi 3.7kB @ 8.6kB/s 0.1s -ncurses 1.2MB @ 2.6MB/s 0.5s -openssl 1.7MB @ 3.5MB/s 0.5s -krb5 1.3MB @ 1.6MB/s 0.5s -detonate 1.1MB @ 1.2MB/s 0.6s -sqlite 1.3MB @ 1.2MB/s 0.6s -boost 305.4kB @ 265.4kB/s 0.4s -samtools 461.9kB @ 174.1kB/s 1.6s -icu 23.4MB @ 6.8MB/s 3.4s -python 12.7MB @ 2.7MB/s 4.2s -boost-cpp 18.1MB @ 3.4MB/s 4.4s -Preparing transaction: done -Verifying transaction: done -Executing transaction: done - -To activate this environment, use - - $ mamba activate detonate_env - -To deactivate an active environment, use - - $ mamba deactivate - - -❯ rse -rSend rSend-maturation rsem-parse-alignments -rSend-4dn rSend-maturation-bin rsem-plot-model -rSend-4dn-bin rSend-results-drivers rsem-preref -rSend-HOME rSend-thorough rsem-sam-validator -rSend-bin rsem-build-read-index rsem-scan-for-paired-end-reads -rSend-bin-data-drivers rsem-eval-calculate-score rsem-simulate-reads -rSend-bin-data-results-drivers rsem-eval-estimate-transcript-length-distribution rsem-synthesis-reference-transcripts -rSend-bin-results-drivers rsem-eval-run-em rsem_perl_utils.pm -rSend-data-drivers rsem-extract-reference-transcripts -``` -
-
-
- - -## Breaking down the DETONATE vignette - -### I Run RSEM-EVAL on each assembly - -#### Breakdown the command-line call -
-Notes: Breakdown the command-line call - -1. Obtain the average fragment length for data with, e.g., [picard CollectInsertSizeMetrics](https://gatk.broadinstitute.org/hc/en-us/articles/360037055772-CollectInsertSizeMetrics-Picard-) -2. Run something like the following—except adapted for paired-end reads -```bash -./rsem-eval/rsem-eval-calculate-score \ - examples/toy_SE.fq \ - examples/toy_assembly_1.fa \ - examples/rsem_eval_1 \ - 76 \ - --transcript-length-parameters \ - rsem-eval/true_transcript_length_distribution/mouse.txt \ - -p 16 -``` -...where -- positional argument 1: specify the reads -- positional argument 2: specify the assembly -- positional argument 3: specify the path and prefix for output -- positional argument 4: - + single-end RNA-seq reads: specify the read length; if there are multiple read lengths, then specify the mean - + paired-end RNA-seq reads: mean fragment length obtained from something like [picard CollectInsertSizeMetrics](https://gatk.broadinstitute.org/hc/en-us/articles/360037055772-CollectInsertSizeMetrics-Picard-) -
-
- - -### II Run RSEM-EVAL on each assembly - - - -## etc. -```bash -#!/bin/bash - -rsem-eval-calculate-score -``` - -```txt - - - -❯ rsem-eval-calculate-score -Invalid number of arguments! -NAME - rsem-eval-calculate-score - -SYNOPSIS - rsem-eval-calculate-score [options] upstream_read_file(s) assembly_fasta_file sample_name L - rsem-eval-calculate-score [options] --paired-end upstream_read_file(s) downstream_read_file(s) assembly_fasta_file sample_name L - rsem-eval-calculate-score [options] --sam/--bam [--paired-end] input assembly_fasta_file sample_name L - -ARGUMENTS - upstream_read_files(s) - Comma-separated list of files containing single-end reads or - upstream reads for paired-end data. By default, these files are - assumed to be in FASTQ format. If the --no-qualities option is - specified, then FASTA format is expected. - - downstream_read_file(s) - Comma-separated list of files containing downstream reads which are - paired with the upstream reads. By default, these files are assumed - to be in FASTQ format. If the --no-qualities option is specified, - then FASTA format is expected. - - input - SAM/BAM formatted input file. If "-" is specified for the filename, - SAM/BAM input is instead assumed to come from standard input. - RSEM-EVAL requires all alignments of the same read group together. - For paired-end reads, RSEM-EVAL also requires the two mates of any - alignment be adjacent. See Description section for how to make input - file obey RSEM-EVAL's requirements. - - assembly_fasta_file - A multi-FASTA file contains the assembly used for calculating - RSEM-EVAL score. - - sample_name - The name of the sample analyzed. All output files are prefixed by - this name (e.g., sample_name.isoforms.results). - - L For single-end data, L represents the average read length. For - paired-end data, L represents the average fragment length. It should - be a positive integer (real value will be rounded to the nearest - integer). - -BASIC OPTIONS - --overlap-size - The minimum overlap size required to join two reads together. - (Default: 0) - - --transcript-length-parameters - Read the true transcript length distribution's mean and standard - deviation from . This option is mutually exclusive with - '--transcript-length-mean' and '--transcript-length-sd'. (Default: - off) - - --transcript-length-mean - The mean of true transcript length distribution. This option is used - together with '--transcript-length-sd' and mutually exclusive with - '--estimate-transcript-length-distribution'. (Default: learned from - human Ensembl annotation and hg20 genome) - - --transcript-length-sd - The standard deviation of true transcript length distribution. This - option is used together with '--transcript-length-mean' and mutually - exclusive with '--estimate-transcript-length-distribution'. - (Default: learned from human Ensembl annotation and hg20 genome) - - --paired-end - Input reads are paired-end reads. (Default: off) - - --no-qualities - Input reads do not contain quality scores. (Default: off) - - --strand-specific - The RNA-Seq protocol used to generate the reads is strand specific, - i.e., all (upstream) reads are derived from the forward strand. This - option is equivalent to --forward-prob=1.0. With this option set, if - RSEM-EVAL runs the Bowtie/Bowtie 2 aligner, the '--norc' - Bowtie/Bowtie 2 option will be used, which disables alignment to the - reverse strand of transcripts. (Default: off) - - --bowtie2 - Use Bowtie 2 instead of Bowtie to align reads. Since currently - RSEM-EVAL does not handle indel, local and discordant alignments, - the Bowtie2 parameters are set in a way to avoid those alignments. - In particular, we use options '--sensitive --dpad 0 --gbar 99999999 - --mp 1,1 --np 1 --score-min L,0,-0.1' by default. "-0.1", the last - parameter of '--score-min' is the negative value of the maximum - mismatch rate allowed. This rate can be set by option - '--bowtie2-mismatch-rate'. If reads are paired-end, we additionally - use options '--no-mixed' and '--no-discordant'. (Default: off) - - --sam - Input file is in SAM format. (Default: off) - - --bam - Input file is in BAM format. (Default: off) - - -p/--num-threads - Number of threads to use. Both Bowtie/Bowtie2, expression estimation - and 'samtools sort' will use this many threads. (Default: 1) - - --output-bam - Generate BAM outputs. (Default: off) - - --sampling-for-bam - When RSEM-EVAL generates a BAM file, instead of outputing all - alignments a read has with their posterior probabilities, one - alignment is sampled according to the posterior probabilities. The - sampling procedure includes the alignment to the "noise" transcript, - which does not appear in the BAM file. Only the sampled alignment - has a weight of 1. All other alignments have weight 0. If the - "noise" transcript is sampled, all alignments appeared in the BAM - file should have weight 0. (Default: off) - - --seed - Set the seed for the random number generators used in calculating - posterior mean estimates and credibility intervals. The seed must be - a non-negative 32 bit interger. (Default: off) - - -q/--quiet - Suppress the output of logging information. (Default: off) - - -h/--help - Show help information. - - --version - Show version information. - -ADVANCED OPTIONS - --sam-header-info - RSEM-EVAL reads header information from input by default. If this - option is on, header information is read from the specified file. - For the format of the file, please see SAM official website. - (Default: "") - - --seed-length - Seed length used by the read aligner. Providing the correct value is - important for RSEM-EVAL. If RSEM-EVAL runs Bowtie, it uses this - value for Bowtie's seed length parameter. Any read with its or at - least one of its mates' (for paired-end reads) length less than this - value will be ignored. If the references are not added poly(A) - tails, the minimum allowed value is 5, otherwise, the minimum - allowed value is 25. Note that this script will only check if the - value >= 5 and give a warning message if the value < 25 but >= 5. - (Default: 25) - - --tag - The name of the optional field used in the SAM input for identifying - a read with too many valid alignments. The field should have the - format :i:, where a bigger than 0 indicates - a read with too many alignments. (Default: "") - - --bowtie-path - The path to the Bowtie executables. (Default: the path to the Bowtie - executables is assumed to be in the user's PATH environment - variable) - - --bowtie-n - (Bowtie parameter) max # of mismatches in the seed. (Range: 0-3, - Default: 2) - - --bowtie-e - (Bowtie parameter) max sum of mismatch quality scores across the - alignment. (Default: 99999999) - - --bowtie-m - (Bowtie parameter) suppress all alignments for a read if > - valid alignments exist. (Default: 200) - - --bowtie-chunkmbs - (Bowtie parameter) memory allocated for best first alignment - calculation (Default: 0 - use Bowtie's default) - - --phred33-quals - Input quality scores are encoded as Phred+33. (Default: on) - - --phred64-quals - Input quality scores are encoded as Phred+64 (default for GA - Pipeline ver. >= 1.3). (Default: off) - - --solexa-quals - Input quality scores are solexa encoded (from GA Pipeline ver. < - 1.3). (Default: off) - - --bowtie2-path - (Bowtie 2 parameter) The path to the Bowtie 2 executables. (Default: - the path to the Bowtie 2 executables is assumed to be in the user's - PATH environment variable) - - --bowtie2-mismatch-rate - (Bowtie 2 parameter) The maximum mismatch rate allowed. (Default: - 0.1) - - --bowtie2-k - (Bowtie 2 parameter) Find up to alignments per read. (Default: - 200) - - --bowtie2-sensitivity-level - (Bowtie 2 parameter) Set Bowtie 2's preset options in --end-to-end - mode. This option controls how hard Bowtie 2 tries to find - alignments. must be one of "very_fast", "fast", "sensitive" - and "very_sensitive". The four candidates correspond to Bowtie 2's - "--very-fast", "--fast", "--sensitive" and "--very-sensitive" - options. (Default: "sensitive" - use Bowtie 2's default) - - --forward-prob - Probability of generating a read from the forward strand of a - transcript. Set to 1 for a strand-specific protocol where all - (upstream) reads are derived from the forward strand, 0 for a - strand-specific protocol where all (upstream) read are derived from - the reverse strand, or 0.5 for a non-strand-specific protocol. - (Default: 0.5) - - --fragment-length-min - Minimum read(SE)/fragment(PE) length allowed. This is also the value - for the Bowtie/Bowtie2 -I option. (Default: 1) - - --fragment-length-max - Maximum read(SE)/fragment(PE) length allowed. This is also the value - for the Bowtie/Bowtie 2 -X option. (Default: 1000) - - --estimate-rspd - Set this option if you want to estimate the read start position - distribution (RSPD) from data. Otherwise, RSEM-EVAL will use a - uniform RSPD. (Default: off) - - --num-rspd-bins - Number of bins in the RSPD. Only relevant when '--estimate-rspd' is - specified. Use of the default setting is recommended. (Default: 20) - - --samtools-sort-mem - Set the maximum memory per thread that can be used by 'samtools - sort'. represents the memory and accepts suffices 'K/M/G'. - RSEM-EVAL will pass to the '-m' option of 'samtools sort'. - Please note that the default used here is different from the default - used by samtools. (Default: 1G) - - --keep-intermediate-files - Keep temporary files generated by RSEM-EVAL. RSEM-EVAL creates a - temporary directory, 'sample_name.temp', into which it puts all - intermediate output files. If this directory already exists, - RSEM-EVAL overwrites all files generated by previous RSEM-EVAL runs - inside of it. By default, after RSEM-EVAL finishes, the temporary - directory is deleted. Set this option to prevent the deletion of - this directory and the intermediate files inside of it. (Default: - off) - - --temporary-folder - Set where to put the temporary files generated by RSEM-EVAL. If the - folder specified does not exist, RSEM-EVAL will try to create it. - (Default: sample_name.temp) - - --time - Output time consumed by each step of RSEM-EVAL to - 'sample_name.time'. (Default: off) - -DESCRIPTION - In its default mode, this program builds indices, aligns input reads - against a reference assembly with Bowtie and calculates RSEM-EVAL score - and expression values using the alignments. RSEM-EVAL assumes the data - are single-end reads with quality scores, unless the '--paired-end' or - '--no-qualities' options are specified. Users may use an alternative - aligner by specifying one of the --sam and --bam options, and providing - an alignment file in the specified format. However, users should make - sure that they align against 'assembly_fasta_file' and the alignment - file satisfies the requirements mentioned in ARGUMENTS section. - - The SAM/BAM format RSEM-EVAL uses is v1.4. However, it is compatible - with old SAM/BAM format. However, RSEM-EVAL cannot recognize 0x100 in - the FLAG field. In addition, RSEM-EVAL requires SEQ and QUAL are not - '*'. - - Please note that some of the default values for the Bowtie parameters - are not the same as those defined for Bowtie itself. - - The temporary directory and all intermediate files will be removed when - RSEM-EVAL finishes unless '--keep-intermediate-files' is specified. - -OUTPUT - sample_name.score, sample_name.score.isoforms.results and - sample_name.score.genes.results - 'sample_name.score' stores the evaluation score for the evaluated - assembly. It contains 13 lines and each line contains a name and a - value separated by a tab. - - The first 6 lines provide: 'Score', the RSEM-EVAL score; - 'BIC_penalty', the BIC penalty term; - 'Prior_score_on_contig_lengths_(f_function_canceled)', the log score - of priors of contig lengths, with f function values excluded (f - function is defined in equation (4) at page 5 of Additional file 1, - which is the supplementary methods, tables and figures of our - DETONATE paper); 'Prior_score_on_contig_sequences', the log score of - priors of contig sequence bases; - 'Data_likelihood_in_log_space_without_correction', the RSEM log data - likelihood calculated with contig-level read generating - probabilities mentioned in section 4 of Additional file 1; - 'Correction_term_(f_function_canceled)', the correction term, with f - function values excluded. Score = BIC_penalty + - Prior_score_on_contig_lengths + Prior_score_on_contig_sequences + - Data_likelihood_in_log_space_without_correction - Correction_term. - Because both 'Prior_score_on_contig_lengths' and 'Correction_term' - share the same f function values for each contig, the f function - values can be canceled out. Then - 'Prior_score_on_contig_lengths_(f_function_canceled)' is the sum of - log $c_{\lambda}(\ell)$ terms in equation (9) at page 5 of - Additional file 1. 'Correction_term_(f_function_canceled)' is the - sum of log $(1 - p_{\lambda_i})$ terms in equation (23) at page 9 of - Additional file 1. For the correction term, we use $\lambda_i$ - instead of $\lambda'_i$ to make f function canceled out. - - The next 7 lines provide statistics that may help users to - understand the RSEM-EVAL score better. They are: - 'Number_of_contigs', the number of contigs contained in the - assembly; 'Expected_number_of_aligned_reads_given_the_data', the - expected number of reads assigned to each contig estimated using the - contig-level read generating probabilities mentioned in section 4 of - Additional file 1; - 'Number_of_contigs_smaller_than_expected_read/fragment_length', the - number of contigs whose length is smaller than the expected - read/fragment length; 'Number_of_contigs_with_no_read_aligned_to', - the number of contigs whose expected number of aligned reads is - smaller than 0.005; 'Maximum_data_likelihood_in_log_space', the - maximum data likelihood in log space calculated from RSEM by - treating the assembly as "true" transcripts; - 'Number_of_alignable_reads', the number of reads that have at least - one alignment found by the aligner (Because - 'rsem-calculate-expression' tries to use a very loose criteria to - find alignments, reads with only low quality alignments may also be - counted as alignable reads here); 'Number_of_alignments_in_total', - the number of total alignments found by the aligner. - - 'sample_name.score.isoforms.results' and - 'sample_name.score.genes.results' output "corrected" expression - levels based on contig-level read generating probabilities mentioned - in section 4 of Additional file 1. Unlike - 'sample_name.isoforms.results' and 'sample_name.genes.results', - which are calculated by treating the contigs as true transcripts, - calculating 'sample_name.score.isoforms.results' and - 'sample_name.score.genes.results' involves first estimating expected - read coverage for each contig and then convert the expected read - coverage into contig-level read generating probabilities. This - procedure is aware of that provided sequences are contigs and gives - better expression estimates for very short contigs. In addtion, the - 'TPM' field is changed to 'CPM' field, which stands for contig per - million. - - For 'sample_name.score.isoforms.results', one additional column is - added. The additional column is named as 'contig_impact_score' and - gives the contig impact score for each contig as described in - section 5 of Additional file 1. - - sample_name.isoforms.results - File containing isoform level expression estimates. The first line - contains column names separated by the tab character. The format of - each line in the rest of this file is: - - transcript_id gene_id length effective_length expected_count TPM - FPKM IsoPct - - Fields are separated by the tab character. - - 'transcript_id' is the transcript name of this transcript. 'gene_id' - is the gene name of the gene which this transcript belongs to - (denote this gene as its parent gene). If no gene information is - provided, 'gene_id' and 'transcript_id' are the same. - - 'length' is this transcript's sequence length (poly(A) tail is not - counted). 'effective_length' counts only the positions that can - generate a valid fragment. If no poly(A) tail is added, - 'effective_length' is equal to transcript length - mean fragment - length + 1. If one transcript's effective length is less than 1, - this transcript's both effective length and abundance estimates are - set to 0. - - 'expected_count' is the sum of the posterior probability of each - read comes from this transcript over all reads. Because 1) each read - aligning to this transcript has a probability of being generated - from background noise; 2) RSEM-EVAL may filter some alignable low - quality reads, the sum of expected counts for all transcript are - generally less than the total number of reads aligned. - - 'TPM' stands for Transcripts Per Million. It is a relative measure - of transcript abundance. The sum of all transcripts' TPM is 1 - million. 'FPKM' stands for Fragments Per Kilobase of transcript per - Million mapped reads. It is another relative measure of transcript - abundance. If we define l_bar be the mean transcript length in a - sample, which can be calculated as - - l_bar = \sum_i TPM_i / 10^6 * effective_length_i (i goes through - every transcript), - - the following equation is hold: - - FPKM_i = 10^3 / l_bar * TPM_i. - - We can see that the sum of FPKM is not a constant across samples. - - 'IsoPct' stands for isoform percentage. It is the percentage of this - transcript's abandunce over its parent gene's abandunce. If its - parent gene has only one isoform or the gene information is not - provided, this field will be set to 100. - - sample_name.genes.results - File containing gene level expression estimates. The first line - contains column names separated by the tab character. The format of - each line in the rest of this file is: - - gene_id transcript_id(s) length effective_length expected_count TPM - FPKM - - Fields are separated by the tab character. - - 'transcript_id(s)' is a comma-separated list of transcript_ids - belonging to this gene. If no gene information is provided, - 'gene_id' and 'transcript_id(s)' are identical (the - 'transcript_id'). - - A gene's 'length' and 'effective_length' are defined as the weighted - average of its transcripts' lengths and effective lengths (weighted - by 'IsoPct'). A gene's abundance estimates are just the sum of its - transcripts' abundance estimates. - - sample_name.transcript.bam, sample_name.transcript.sorted.bam and - sample_name.transcript.sorted.bam.bai - Only generated when --output-bam is specified. - - 'sample_name.transcript.bam' is a BAM-formatted file of read - alignments in transcript coordinates. The MAPQ field of each - alignment is set to min(100, floor(-10 * log10(1.0 - w) + 0.5)), - where w is the posterior probability of that alignment being the - true mapping of a read. In addition, RSEM-EVAL pads a new tag - ZW:f:value, where value is a single precision floating number - representing the posterior probability. Because this file contains - all alignment lines produced by bowtie or user-specified aligners, - it can also be used as a replacement of the aligner generated - BAM/SAM file. For paired-end reads, if one mate has alignments but - the other does not, this file marks the alignable mate as - "unmappable" (flag bit 0x4) and appends an optional field "Z0:A:!". - - 'sample_name.transcript.sorted.bam' and - 'sample_name.transcript.sorted.bam.bai' are the sorted BAM file and - indices generated by samtools (included in RSEM-EVAL package). - - sample_name.time - Only generated when --time is specified. - - It contains time (in seconds) consumed by building references, - aligning reads, estimating expression levels and calculating - credibility intervals. - - sample_name.stat - This is a folder instead of a file. All model related statistics are - stored in this folder. Use 'rsem-plot-model' can generate plots - using this folder. - -EXAMPLES - We want to compute the RSEM-EVAL score for a contig assembly, - 'assembly1.fa'. Our data are 76bp single-end reads contained in - '/data/reads.fq'. The related species is human and - 'human_transcripts.fa' contains all human transcripts. We use 8 threads - and do not generate any BAM files. In addition, we set the overlap size - w as 0 and 'sample_name' as 'assembly1_rsem_eval'. - - First, we need to estimate the true transcript length distribution using - 'human_transcripts.fa': - - rsem-eval-estimate-transcript-length-distribution human_transcripts.fa human.txt - - Now, we can calculate RSEM-EVAL score: - - rsem-eval-calculate-score -p 8 \ - --transcript-length-parameters human.txt \ - /data/reads.fq \ - assembly1.fa \ - assembly1_rsem_eval \ - 76 - - The RSEM-EVAL score can be found in 'assembly1_rsem_eval.score' and the - contig impact scores can be found in - 'assembly1_rsem_eval.score.isoforms.results'. -``` - - -## Miscellaneous -- [The Concepts of Mean Fragment Length and Effective Length in RNA Sequencing](https://www.youtube.com/watch?v=BNVMVpToGsM&t) `#WATCHED` -- [Calculating Gene Length for RNA Sequencing Experiment](https://www.youtube.com/watch?v=wbspK7ezV0A) `#UNWATCHED` - diff --git a/results/2023-0218/study_run_rnaQUAST.md b/results/2023-0218/study_run_rnaQUAST.md deleted file mode 100644 index 7f633a2..0000000 --- a/results/2023-0218/study_run_rnaQUAST.md +++ /dev/null @@ -1,3177 +0,0 @@ - -`#study_run_rnaQUAST.md` -
-
- -
-Table of contents - - -1. [Install rnaQUAST in its own environment \(2023-0218\)](#install-rnaquast-in-its-own-environment-2023-0218) - 1. [Code](#code) - 1. [Printed](#printed) -1. [Check on Trinity GG Q_N that failed/didn't complete \(2023-0218\)](#check-on-trinity-gg-q_n-that-faileddidnt-complete-2023-0218) - 1. [Notes, printed](#notes-printed) - 1. [Printed](#printed-1) -1. [Do a trial run with current Trinity GG Q_N assemblies \(2023-0218\)](#do-a-trial-run-with-current-trinity-gg-q_n-assemblies-2023-0218) - 1. [Make necessary directories](#make-necessary-directories) - 1. [Code](#code-1) - 1. [Symlink the Trinity GG Q_N directory, create merged version of the fastqs](#symlink-the-trinity-gg-q_n-directory-create-merged-version-of-the-fastqs) - 1. [Code](#code-2) - 1. [Download and store the BUSCO database for the *Saccharomycetes* class](#download-and-store-the-busco-database-for-the-saccharomycetes-class) - 1. [Grab a node with 32 cores, get situated](#grab-a-node-with-32-cores-get-situated) - 1. [Code](#code-3) - 1. [Initialize variables, arrays related to Trinity GG Q_N fasta files](#initialize-variables-arrays-related-to-trinity-gg-q_n-fasta-files) - 1. [Code](#code-4) - 1. [Launch the trial run of rnaQUAST](#launch-the-trial-run-of-rnaquast) - 1. [Code](#code-5) - 1. [Printed](#printed-2) - 1. [Check in, assess the job situation \(2023-0220, 10:20 a.m.\)](#check-in-assess-the-job-situation-2023-0220-1020-am) - 1. [Next steps \(2023-0220, 11:10 a.m.\)](#next-steps-2023-0220-1110-am) - 1. [Kill the initial run \(2023-0220, 12:00 p.m.\)](#kill-the-initial-run-2023-0220-1200-pm) -1. [Install up-to-date rnaQUAST in its own environment \(2023-0220\)](#install-up-to-date-rnaquast-in-its-own-environment-2023-0220) - 1. [Code](#code-6) - 1. [Printed](#printed-3) -1. [Do ~~three~~n new trial runs \(2023-0220-0221\)](#do-~~three~~n-new-trial-runs-2023-0220-0221) - 1. [Prepare for and perform run 1](#prepare-for-and-perform-run-1) - 1. [Code](#code-7) - 1. [Printed](#printed-4) - 1. [Prepare for and perform run 2](#prepare-for-and-perform-run-2) - 1. [Code](#code-8) - 1. [Printed](#printed-5) - 1. [Prepare for and perform run 3](#prepare-for-and-perform-run-3) - 1. [Code](#code-9) - 1. [Printed](#printed-6) - 1. [Prepare for and perform run 4](#prepare-for-and-perform-run-4) - 1. [Code](#code-10) - 1. [Printed](#printed-7) - 1. [Prepare for and perform run 5](#prepare-for-and-perform-run-5) - 1. [Code](#code-11) - 1. [Printed](#printed-8) - 1. [Prepare for and perform run 6](#prepare-for-and-perform-run-6) - 1. [Code](#code-12) - 1. [Printed](#printed-9) - - -
-
- - -## Install rnaQUAST in its own environment (2023-0218) - -### Code -
-Code: Install rnaQUAST in its own environment (2023-0218) - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -conda create -n rnaquast_env -c bioconda rnaquast -``` -
-
- - -### Printed -
-Printed: Install rnaQUAST in its own environment (2023-0218) - -```txt -❯ conda create -n rnaquast_env -c bioconda rnaquast -Retrieving notices: ...working... done -Collecting package metadata (current_repodata.json): done -Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. -Collecting package metadata (repodata.json): done -Solving environment: done - - -==> WARNING: A newer version of conda exists. <== - current version: 22.11.1 - latest version: 23.1.0 - -Please update conda by running - - $ conda update -n base -c defaults conda - -Or to minimize the number of packages updated during conda update use - - conda install conda=23.1.0 - - - -## Package Plan ## - - environment location: /home/kalavatt/miniconda3/envs/rnaquast_env - - added / updated specs: - - rnaquast - - -The following packages will be downloaded: - - package | build - ---------------------------|----------------- - argcomplete-1.12.3 | pyhd3eb1b0_0 35 KB - argh-0.26.2 | py36_0 36 KB - augustus-3.1 | 0 34.7 MB bioconda - blas-1.0 | mkl 6 KB - blast-2.5.0 | hc0b0e79_3 137.8 MB bioconda - blat-35 | 1 1.7 MB bioconda - boost-1.73.0 | py36h06a4308_11 25 KB - busco-2.0.1 | py36_0 29 KB bioconda - c-ares-1.18.1 | h7f8727e_0 114 KB - certifi-2021.5.30 | py36h06a4308_0 139 KB - curl-7.87.0 | h5eee18b_0 88 KB - cycler-0.11.0 | pyhd3eb1b0_0 12 KB - emboss-6.6.0 | h6debe1e_0 94.5 MB bioconda - gffutils-0.11.1 | pyh7cba7a3_0 1.2 MB bioconda - gmap-2021.08.25 | pl5262h36cd882_0 27.1 MB bioconda - hmmer-3.3.2 | h87f3376_2 9.6 MB bioconda - importlib-metadata-4.8.1 | py36h06a4308_0 38 KB - importlib_metadata-4.8.1 | hd3eb1b0_0 11 KB - intel-openmp-2022.1.0 | h9e868ea_3769 4.5 MB - joblib-1.0.1 | pyhd3eb1b0_0 208 KB - kiwisolver-1.3.1 | py36h2531618_0 86 KB - krb5-1.19.4 | h568e23c_0 1.3 MB - lcms2-2.12 | h3be6417_0 312 KB - libboost-1.73.0 | h3ff78a5_11 13.9 MB - libcurl-7.87.0 | h91b91d3_0 373 KB - libev-4.33 | h7f8727e_1 111 KB - libffi-3.3 | he6710b0_2 50 KB - libgcc-7.2.0 | h69d50b8_2 269 KB - libgd-2.3.3 | h695aa2c_1 222 KB - libnghttp2-1.46.0 | hce63b2e_0 680 KB - libtiff-4.2.0 | h85742a9_0 502 KB - matplotlib-base-3.3.4 | py36h62a2d02_0 5.1 MB - mkl-2020.2 | 256 138.3 MB - mkl-service-2.3.0 | py36he8ac12f_0 52 KB - mkl_fft-1.3.0 | py36h54f3939_0 170 KB - mkl_random-1.1.1 | py36h0573a6f_0 327 KB - mysql-connector-c-6.1.6 | 2 9.6 MB bioconda - numpy-1.19.2 | py36h54aff64_0 22 KB - numpy-base-1.19.2 | py36hfa32c7d_0 4.1 MB - olefile-0.46 | py36_0 48 KB - openjpeg-2.4.0 | h3ad879b_0 331 KB - openssl-1.1.1t | h7f8727e_0 3.7 MB - perl-5.26.2 | h14c3975_0 10.5 MB - pillow-8.3.1 | py36h2c7a002_0 637 KB - pip-21.2.2 | py36h06a4308_0 1.8 MB - py-boost-1.73.0 | py36ha9443f7_11 204 KB - pyfaidx-0.7.0 | pyh5e36f6f_0 31 KB bioconda - pyparsing-3.0.4 | pyhd3eb1b0_0 81 KB - python-3.6.13 | h12debd9_1 32.5 MB - python-dateutil-2.8.2 | pyhd3eb1b0_0 233 KB - rnaquast-2.0.1 | 0 4.9 MB bioconda - samtools-1.6 | hb116620_7 514 KB bioconda - setuptools-58.0.4 | py36h06a4308_0 788 KB - simplejson-3.8.1 | py36_0 130 KB bioconda - sqlite-3.40.1 | h5082296_0 1.2 MB - star-2.7.10b | h9ee0642_0 4.9 MB bioconda - tornado-6.1 | py36h27cfd23_0 581 KB - typing_extensions-4.1.1 | pyh06a4308_0 28 KB - ucsc-pslsort-357 | 0 1006 KB bioconda - zipp-3.6.0 | pyhd3eb1b0_0 17 KB - zstd-1.4.9 | haebb681_0 480 KB - ------------------------------------------------------------ - Total: 551.9 MB - -The following NEW packages will be INSTALLED: - - _libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main - _openmp_mutex pkgs/main/linux-64::_openmp_mutex-5.1-1_gnu - argcomplete pkgs/main/noarch::argcomplete-1.12.3-pyhd3eb1b0_0 - argh pkgs/main/linux-64::argh-0.26.2-py36_0 - augustus bioconda/linux-64::augustus-3.1-0 - blas pkgs/main/linux-64::blas-1.0-mkl - blast bioconda/linux-64::blast-2.5.0-hc0b0e79_3 - blat bioconda/linux-64::blat-35-1 - boost pkgs/main/linux-64::boost-1.73.0-py36h06a4308_11 - busco bioconda/linux-64::busco-2.0.1-py36_0 - bzip2 pkgs/main/linux-64::bzip2-1.0.8-h7b6447c_0 - c-ares pkgs/main/linux-64::c-ares-1.18.1-h7f8727e_0 - ca-certificates pkgs/main/linux-64::ca-certificates-2023.01.10-h06a4308_0 - certifi pkgs/main/linux-64::certifi-2021.5.30-py36h06a4308_0 - curl pkgs/main/linux-64::curl-7.87.0-h5eee18b_0 - cycler pkgs/main/noarch::cycler-0.11.0-pyhd3eb1b0_0 - emboss bioconda/linux-64::emboss-6.6.0-h6debe1e_0 - expat pkgs/main/linux-64::expat-2.4.9-h6a678d5_0 - fontconfig pkgs/main/linux-64::fontconfig-2.14.1-h52c9d5c_1 - freetype pkgs/main/linux-64::freetype-2.12.1-h4a9f257_0 - gffutils bioconda/noarch::gffutils-0.11.1-pyh7cba7a3_0 - gmap bioconda/linux-64::gmap-2021.08.25-pl5262h36cd882_0 - hmmer bioconda/linux-64::hmmer-3.3.2-h87f3376_2 - icu pkgs/main/linux-64::icu-58.2-he6710b0_3 - importlib-metadata pkgs/main/linux-64::importlib-metadata-4.8.1-py36h06a4308_0 - importlib_metadata pkgs/main/noarch::importlib_metadata-4.8.1-hd3eb1b0_0 - intel-openmp pkgs/main/linux-64::intel-openmp-2022.1.0-h9e868ea_3769 - joblib pkgs/main/noarch::joblib-1.0.1-pyhd3eb1b0_0 - jpeg pkgs/main/linux-64::jpeg-9e-h7f8727e_0 - kiwisolver pkgs/main/linux-64::kiwisolver-1.3.1-py36h2531618_0 - krb5 pkgs/main/linux-64::krb5-1.19.4-h568e23c_0 - lcms2 pkgs/main/linux-64::lcms2-2.12-h3be6417_0 - ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.38-h1181459_1 - libboost pkgs/main/linux-64::libboost-1.73.0-h3ff78a5_11 - libcurl pkgs/main/linux-64::libcurl-7.87.0-h91b91d3_0 - libedit pkgs/main/linux-64::libedit-3.1.20221030-h5eee18b_0 - libev pkgs/main/linux-64::libev-4.33-h7f8727e_1 - libffi pkgs/main/linux-64::libffi-3.3-he6710b0_2 - libgcc pkgs/main/linux-64::libgcc-7.2.0-h69d50b8_2 - libgcc-ng pkgs/main/linux-64::libgcc-ng-11.2.0-h1234567_1 - libgd pkgs/main/linux-64::libgd-2.3.3-h695aa2c_1 - libgomp pkgs/main/linux-64::libgomp-11.2.0-h1234567_1 - libnghttp2 pkgs/main/linux-64::libnghttp2-1.46.0-hce63b2e_0 - libpng pkgs/main/linux-64::libpng-1.6.37-hbc83047_0 - libssh2 pkgs/main/linux-64::libssh2-1.10.0-h8f2d780_0 - libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-11.2.0-h1234567_1 - libtiff pkgs/main/linux-64::libtiff-4.2.0-h85742a9_0 - libuuid pkgs/main/linux-64::libuuid-1.41.5-h5eee18b_0 - libwebp-base pkgs/main/linux-64::libwebp-base-1.2.4-h5eee18b_0 - libxml2 pkgs/main/linux-64::libxml2-2.9.14-h74e7548_0 - lz4-c pkgs/main/linux-64::lz4-c-1.9.4-h6a678d5_0 - matplotlib-base pkgs/main/linux-64::matplotlib-base-3.3.4-py36h62a2d02_0 - mkl pkgs/main/linux-64::mkl-2020.2-256 - mkl-service pkgs/main/linux-64::mkl-service-2.3.0-py36he8ac12f_0 - mkl_fft pkgs/main/linux-64::mkl_fft-1.3.0-py36h54f3939_0 - mkl_random pkgs/main/linux-64::mkl_random-1.1.1-py36h0573a6f_0 - mysql-connector-c bioconda/linux-64::mysql-connector-c-6.1.6-2 - ncurses pkgs/main/linux-64::ncurses-6.4-h6a678d5_0 - numpy pkgs/main/linux-64::numpy-1.19.2-py36h54aff64_0 - numpy-base pkgs/main/linux-64::numpy-base-1.19.2-py36hfa32c7d_0 - olefile pkgs/main/linux-64::olefile-0.46-py36_0 - openjpeg pkgs/main/linux-64::openjpeg-2.4.0-h3ad879b_0 - openssl pkgs/main/linux-64::openssl-1.1.1t-h7f8727e_0 - perl pkgs/main/linux-64::perl-5.26.2-h14c3975_0 - pillow pkgs/main/linux-64::pillow-8.3.1-py36h2c7a002_0 - pip pkgs/main/linux-64::pip-21.2.2-py36h06a4308_0 - py-boost pkgs/main/linux-64::py-boost-1.73.0-py36ha9443f7_11 - pyfaidx bioconda/noarch::pyfaidx-0.7.0-pyh5e36f6f_0 - pyparsing pkgs/main/noarch::pyparsing-3.0.4-pyhd3eb1b0_0 - python pkgs/main/linux-64::python-3.6.13-h12debd9_1 - python-dateutil pkgs/main/noarch::python-dateutil-2.8.2-pyhd3eb1b0_0 - readline pkgs/main/linux-64::readline-8.2-h5eee18b_0 - rnaquast bioconda/linux-64::rnaquast-2.0.1-0 - samtools bioconda/linux-64::samtools-1.6-hb116620_7 - setuptools pkgs/main/linux-64::setuptools-58.0.4-py36h06a4308_0 - simplejson bioconda/linux-64::simplejson-3.8.1-py36_0 - six pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_1 - sqlite pkgs/main/linux-64::sqlite-3.40.1-h5082296_0 - star bioconda/linux-64::star-2.7.10b-h9ee0642_0 - tk pkgs/main/linux-64::tk-8.6.12-h1ccaba5_0 - tornado pkgs/main/linux-64::tornado-6.1-py36h27cfd23_0 - typing_extensions pkgs/main/noarch::typing_extensions-4.1.1-pyh06a4308_0 - ucsc-pslsort bioconda/linux-64::ucsc-pslsort-357-0 - wheel pkgs/main/noarch::wheel-0.37.1-pyhd3eb1b0_0 - xz pkgs/main/linux-64::xz-5.2.10-h5eee18b_1 - zipp pkgs/main/noarch::zipp-3.6.0-pyhd3eb1b0_0 - zlib pkgs/main/linux-64::zlib-1.2.13-h5eee18b_0 - zstd pkgs/main/linux-64::zstd-1.4.9-haebb681_0 - - -Proceed ([y]/n)? y - - -Downloading and Extracting Packages - -Preparing transaction: done -Verifying transaction: done -Executing transaction: done -# -# To activate this environment, use -# -# $ conda activate rnaquast_env -# -# To deactivate an active environment, use -# -# $ conda deactivate -``` -
-
-
- - -## Check on Trinity GG Q_N that failed/didn't complete (2023-0218) - -### Notes, printed -
-Notes: Check on Trinity GG Q_N that failed/didn't complete (2023-0218) - -In `${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0111/outfiles_Trinity-GG/Q_N`, we see that the following three fasta files have not been generated—what is going with these datasets? -- `trinity-gg_mkc-4_mir-0.005_mg-4_gf-0.01/` -- `trinity-gg_mkc-8_mir-0.1_mg-4_gf-0.05/` -- `trinity-gg_mkc-16_mir-0.01_mg-1_gf-0.05/` - -`trinity-gg_mkc-4_mir-0.005_mg-4_gf-0.01` is still running—it has been running for 2 days and 22 hours at the time of writing - -The other two jobs were nearly completed before they failed; I posted a [question](https://groups.google.com/g/trinityrnaseq-users/c/IwQLh8QZlNg/m/UZz8_NWCAQAJ) to the [trinityrnaseq-users](https://groups.google.com/g/trinityrnaseq-users) forum about this -
-
- - -### Printed -
-Printed: Check on Trinity GG Q_N that failed/didn't complete (2023-0218) - -```txt -❯ cat trinity-gg_mkc-4_mir-0.005_mg-4_gf-0.01.10397285-106.out.txt -singularity run \ - --bind /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0111/infiles_Trinity-GG:/data \ - --bind /fh/scratch/delete30/tsukiyama_t:/loc/scratch \ - ~/singularity-docker-etc/Trinity.sif \ - Trinity \ - --verbose \ - --max_memory 50G \ - --CPU 6 \ - --SS_lib_type FR \ - --genome_guided_bam /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0111/infiles_Trinity-GG/Q_N.bam \ - --genome_guided_max_intron 1002 \ - --jaccard_clip \ - --output /home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0111/outfiles_Trinity-GG/Q_N/trinity-gg_mkc-4_mir-0.005_mg-4_gf-0.01 \ - --full_cleanup \ - --min_kmer_cov 4 \ - --min_iso_ratio 0.005 \ - --min_glue 4 \ - --glue_factor 0.01 \ - --max_reads_per_graph 2000 \ - --normalize_max_read_cov 200 \ - --group_pairs_distance 700 \ - --min_contig_length 200 - - -❯ cat trinity-gg_mkc-4_mir-0.005_mg-4_gf-0.01.10397285-106.err.txt - - -❯ tail -200 trinity-gg_mkc-16_mir-0.01_mg-1_gf-0.05.10397285-207.out.txt -... -############################################################################# -Finished. Final Trinity assemblies are written to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0111/outfiles_Trinity-GG/Q_N/trinity-gg_mkc-16_mir-0.01_mg-1_gf-0.05/Dir_Q_N.bam.norm_200.bam.-.sam.minC1.gff/VII/4/1056589_1063415.trinity.reads.out.Trinity.fasta -############################################################################# - - -Fully cleaning up. -succeeded(4411), failed(368) 100% completed. - -We are sorry, commands in file: [FailedCommands] failed. :-( - -Error, cmd: /usr/local/bin/trinity-plugins/BIN/ParaFly -c trinity_GG.cmds -CPU 6 -v -shuffle died with ret 256 at /usr/local/bin/Trinity line 2919. - main::process_cmd("/usr/local/bin/trinity-plugins/BIN/ParaFly -c trinity_GG.cmds"...) called at /usr/local/bin/Trinity line 3653 - main::run_partitioned_cmds("trinity_GG.cmds") called at /usr/local/bin/Trinity line 3611 - main::run_genome_guided_Trinity("/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-const"..., undef) called at /usr/local/bin/Trinity line 1467 - -Trinity run time -Run time: 3h:38m:33s - - -❯ tail -200 trinity-gg_mkc-8_mir-0.1_mg-4_gf-0.05.10397285-191.out.txt -... -############################################################################# -Finished. Final Trinity assemblies are written to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0111/outfiles_Trinity-GG/Q_N/trinity-gg_mkc-8_mir-0.1_mg-4_gf-0.05/Dir_Q_N.bam.norm_200.bam.-.sam.minC1.gff/VII/4/1056589_1063415.trinity.reads.out.Trinity.fasta -############################################################################# - - -Fully cleaning up. -succeeded(4778), failed(1) 100% completed. - -We are sorry, commands in file: [FailedCommands] failed. :-( - -Error, cmd: /usr/local/bin/trinity-plugins/BIN/ParaFly -c trinity_GG.cmds -CPU 6 -v -shuffle died with ret 256 at /usr/local/bin/Trinity line 2919. - main::process_cmd("/usr/local/bin/trinity-plugins/BIN/ParaFly -c trinity_GG.cmds"...) called at /usr/local/bin/Trinity line 3653 - main::run_partitioned_cmds("trinity_GG.cmds") called at /usr/local/bin/Trinity line 3611 - main::run_genome_guided_Trinity("/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-const"..., undef) called at /usr/local/bin/Trinity line 1467 - -Trinity run time -Run time: 1h:57m:56s -``` -
-
-
- - -## Do a trial run with current Trinity GG Q_N assemblies (2023-0218) -i.e., with 285 of the 288 Trinity GG Q_N assemblies - - -### Make necessary directories - -#### Code -
-Code: Make necessary directories - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -transcriptome && - { - cd "results/" \ - || echo "cd'ing failed; check on this..." - } - -if [[ "${CONDA_DEFAULT_ENV}" != "base" ]]; then - conda deactivate -fi -source activate rnaquast_env - -mkdir 2023-0218/ - -cd "results/2023-0218/" \ - || echo "cd'ing failed; check on this..." - -mkdir outfiles_rnaQUAST-test_Trinity-GG_Q-N/ -``` -
-
- - -### Symlink the Trinity GG Q_N directory, create merged version of the fastqs - -#### Code -
-Code: Symlink the Trinity GG Q_N directory, create merged version of the fastqs - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -find_relative_path() { - realpath --relative-to="${1}" "${2}" -} - - -# Files: assemblies -ori_GG="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0111/outfiles_Trinity-GG/Q_N" -rel_GG="$(find_relative_path "." "${ori_GG}")" # echo "${rel_GG}" - -ln -s "${rel_GG}" Trinity_GG.Q_N - - -# Files: fastqs -mkdir fastqs/ -cd fastqs/ \ - || echo "cd'ing failed; check on this..." -ori_fq="${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0115/bams_UMI-dedup/to-align_umi-extracted_trimmed_kmer-corrected" -rel_fq="$(find_relative_path "." "${ori_fq}")" # echo "${rel_fq}" - -ln -s "${rel_fq}/5781_Q_IP_UTK_R1.fq.gz" "5781_Q_IP_UTK_R1.fq.gz" -ln -s "${rel_fq}/5781_Q_IP_UTK_R3.fq.gz" "5781_Q_IP_UTK_R3.fq.gz" -ln -s "${rel_fq}/5782_Q_IP_UTK_R1.fq.gz" "5782_Q_IP_UTK_R1.fq.gz" -ln -s "${rel_fq}/5782_Q_IP_UTK_R3.fq.gz" "5782_Q_IP_UTK_R3.fq.gz" - -cat "5781_Q_IP_UTK_R1.fq.gz" "5782_Q_IP_UTK_R1.fq.gz" \ - > "merged_Q_IP_UTK_R1.fq.gz" - -cat "5781_Q_IP_UTK_R3.fq.gz" "5782_Q_IP_UTK_R3.fq.gz" \ - > "merged_Q_IP_UTK_R3.fq.gz" -``` - - -### Download and store the BUSCO database for the *Saccharomycetes* class -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# File: BUSCO lineage -cd .. -mkdir BUSCO/ -cd BUSCO/ \ - || echo "cd'ing failed; check on this..." -curl \ - https://busco-data.ezlab.org/v4/data/lineages/saccharomycetes_odb10.2020-08-05.tar.gz \ - -o saccharomycetes_odb10.2020-08-05.tar.gz -``` -
-
- - -### Grab a node with 32 cores, get situated - -#### Code -
-Code: Grab a node with 32 cores, get situated - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -grabnode # 32, etc. - -transcriptome && - { - cd "results/2023-0218/" \ - || echo "cd'ing failed; check on this..." - } -``` -
-
- - -### Initialize variables, arrays related to Trinity GG Q_N fasta files - -#### Code -
-Code: Initialize variables, arrays related to Trinity GG Q_N fasta files - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -# Arrays ----------------------------- -unset f_GG -typeset -a f_GG -while IFS=" " read -r -d $'\0'; do - f_GG+=( "${REPLY}" ) -done < <(\ - find "./Trinity_GG.Q_N/" \ - -maxdepth 3 \ - -type f \ - -name "*.fasta" \ - -print0 \ - | sort -z\ -) -echo_test "${f_GG[@]}" -echo "${#f_GG[@]}" # 285 - -unset n_GG -typeset -a n_GG -for i in "${f_GG[@]}"; do - # i="${f_GG[0]}" # echo "${i}" - name="$(basename "${i}" .Trinity-GG.fasta)" # echo "${name}" - n_GG+=( "${name#trinity-}" ) -done -echo_test "${n_GG[@]}" -echo "${#n_GG[@]}" # 285 - -# Check that files and names match -echo_test "${f_GG[@]}" | head -echo_test "${n_GG[@]}" | head -echo_test "${f_GG[@]}" | tail -echo_test "${n_GG[@]}" | tail - - -# Variables -------------------------- -p_ref="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -f_ref="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" - -p_gtf="${HOME}/genomes/sacCer3/Ensembl/108/gtf" -f_gtf="Saccharomyces_cerevisiae.R64-1-1.108.gtf" - -p_gmap="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -d_gmap="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap" -``` -
-
- - -### Launch the trial run of rnaQUAST - -#### Code -
-Code: Launch the trial run of rnaQUAST - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -source activate rnaquast_env -rnaQUAST.py - -rnaQUAST.py \ - -t "${SLURM_CPUS_ON_NODE}" \ - --labels ${n_GG[*]} \ - --transcripts ${f_GG[*]} \ - --reference "${p_ref}/${f_ref}" \ - --gtf "${p_gtf}/${f_gtf}" \ - --gmap_index "${p_gmap}/${d_gmap}" \ - --strand_specific \ - --left_reads "fastqs/merged_Q_IP_UTK_R1.fq.gz" \ - --right_reads "fastqs/merged_Q_IP_UTK_R3.fq.gz" \ - --output_dir "outfiles_rnaQUAST-test_Trinity-GG_Q-N/" \ - --busco_lineage "BUSCO/saccharomycetes_odb10.2020-08-05.tar.gz" \ - --gene_mark \ - --disable_infer_genes \ - --disable_infer_transcripts -``` -
-
- - -#### Printed -
-Printed: Launch the trial run of rnaQUAST - -```txt -❯ rnaQUAST.py -usage: /home/kalavatt/miniconda3/envs/rnaquast_env/bin/rnaQUAST.py - [-h] [-r REFERENCE [REFERENCE ...]] [--gtf GTF [GTF ...]] - [--gene_db GENE_DB] [-c TRANSCRIPTS [TRANSCRIPTS ...]] - [-psl ALIGNMENT [ALIGNMENT ...]] [-sam READS_ALIGNMENT] [-1 LEFT_READS] - [-2 RIGHT_READS] [-s SINGLE_READS] [--gmap_index GMAP_INDEX] - [-o OUTPUT_DIR] [--test] [-d] [-t THREADS] [-l LABELS [LABELS ...]] - [-ss] [--min_alignment MIN_ALIGNMENT] [--no_plots] [--blat] - [--gene_mark] [--meta] [--lower_threshold LOWER_THRESHOLD] - [--upper_threshold UPPER_THRESHOLD] [--disable_infer_genes] - [--disable_infer_transcripts] [--busco_lineage BUSCO_LINEAGE] - [--prokaryote] - -QUALITY ASSESSMENT FOR TRANSCRIPTOME ASSEMBLIES /home/kalavatt/miniconda3/envs/rnaquast_env/bin/rnaQUAST.py v.2.0.1 - -Usage: -python /home/kalavatt/miniconda3/envs/rnaquast_env/bin/rnaQUAST.py --transcripts TRANSCRIPTS --reference REFERENCE --gtf GENE_COORDINATES - -optional arguments: - -h, --help show this help message and exit - -Input data: - -r REFERENCE [REFERENCE ...], --reference REFERENCE [REFERENCE ...] - Single file (or several files for meta RNA) with - reference genome in FASTA format or *.txt file with - one-per-line list of FASTA files with reference - sequences - --gtf GTF [GTF ...] File with gene coordinates (or several files or *.txt - file with one-per-line list of GTF / GFF files for - meta RNA). We recommend to use files downloaded from - GENCODE or Ensembl [GTF/GFF] - --gene_db GENE_DB Path to the gene database generated by gffutils to be - used - -c TRANSCRIPTS [TRANSCRIPTS ...], --transcripts TRANSCRIPTS [TRANSCRIPTS ...] - File(s) with transcripts [FASTA] - -psl ALIGNMENT [ALIGNMENT ...], --alignment ALIGNMENT [ALIGNMENT ...] - File(s) with transcript alignments to the reference - genome [PSL] - -sam READS_ALIGNMENT, --reads_alignment READS_ALIGNMENT - File with read alignments to the reference genome - [SAM] - -1 LEFT_READS, --left_reads LEFT_READS - File with forward paired-end reads [FASTQ or gzip- - compressed] - -2 RIGHT_READS, --right_reads RIGHT_READS - File with reverse paired-end reads [FASTQ or gzip- - compressed] - -s SINGLE_READS, --single_reads SINGLE_READS - File with unpaired reads [FASTQ or gzip-compressed] - --gmap_index GMAP_INDEX - Folder containing GMAP index for the reference genome - -Basic options: - -o OUTPUT_DIR, --output_dir OUTPUT_DIR - Directory to store all results [default: - rnaQUAST_results/results_] - --test Run rnaQUAST on the test data from the test_data - folder, output directory is rnaOUAST_test_output - -d, --debug Report detailed information, typically used only for - detecting problems. - -Advanced options: - -t THREADS, --threads THREADS - Maximum number of threads, default: min(number of CPUs - / 2, 16) - -l LABELS [LABELS ...], --labels LABELS [LABELS ...] - Name(s) of assemblies that will be used in the reports - -ss, --strand_specific - Set if transcripts were assembled using strand- - specific RNA-Seq data - --min_alignment MIN_ALIGNMENT - Minimal alignment length, default: 50 - --no_plots Do not draw plots (to speed up computation) - --blat Run with BLAT alignment tool - (http://hgwdev.cse.ucsc.edu/~kent/exe/) instead of - GMAP - --gene_mark Run with GeneMarkS-T tool - (http://topaz.gatech.edu/GeneMark/) - --meta Run QUALITY ASSESSMENT FOR METATRANSCRIPTOME - ASSEMBLIES - --lower_threshold LOWER_THRESHOLD - Lower threshold for x-assembled/covered/matched - metrics, default: 0.5 - --upper_threshold UPPER_THRESHOLD - Upper threshold for x-assembled/covered/matched - metrics, default: 0.95 - --prokaryote Use this option if the genome is prokaryotic - -Gffutils related options: - --disable_infer_genes - Use this option if your GTF file already contains - genes records - --disable_infer_transcripts - Use this option if your GTF already contains - transcripts records - -BUSCO related options: - --busco_lineage BUSCO_LINEAGE - Run with BUSCO tool (http://busco.ezlab.org/). Path to - the BUSCO lineage data to be used (Eukaryota, Metazoa, - Arthropoda, Vertebrata or Fungi) - -Don't forget to add GMAP (or BLAT) to PATH. -``` -
-
- - -### Check in, assess the job situation (2023-0220, 10:20 a.m.) -
-Notes: Check in, assess the job situation (2023-0220, 10:20 a.m.) - -
-In checking the rnaQUAST log, the job has been stuck with the following message since ~18:00 p.m., 2023-0218: - -```txt -2023-02-18 17:55:33 -Getting database coverage by reads... - - -❯ pwd -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N - - -❯ .,sf --rw-r----- 1 kalavatt 33M Feb 18 17:49 ./Saccharomyces_cerevisiae.R64-1-1.108.db - -./tmp: -total 13M --rw-rw---- 1 kalavatt 10M Feb 18 17:49 Saccharomyces_cerevisiae.R64-1-1.108.cleared.gtf -drwxrws--- 4 kalavatt 100 Feb 18 17:49 ../ -drwxrws--- 3 kalavatt 92 Feb 18 17:51 ./ -drwxrws--- 5 kalavatt 230 Feb 18 17:55 star_out/ - -./logs: -total 328K -drwxrws--- 4 kalavatt 100 Feb 18 17:49 ../ --rw-rw---- 1 kalavatt 0 Feb 18 17:51 STAR.err.log -drwxrws--- 2 kalavatt 90 Feb 18 17:51 ./ --rw-rw---- 1 kalavatt 2.2K Feb 18 17:55 STAR.out.log --rw-rw---- 1 kalavatt 35K Feb 18 17:56 rnaQUAST.log -``` - -Nothing has been written to `./Saccharomyces_cerevisiae.R64-1-1.108.db` since `Feb 18 17:49`, and nothing has been written to `rnaQUAST.log` since `Feb 18 17:56` - -To review, here is how I called rnaQUAST (per `rnaQUAST.log`): - -```txt -/home/kalavatt/miniconda3/envs/rnaquast_env/share/rnaquast-2.0.1-0/rnaQUAST.py -t 32 --labels gg_mkc-16_mir-0.005_mg-1_gf-0.005 gg_mkc-16_mir-0.005_mg-1_gf-0.01 gg_mkc-16_mir-0.005_mg-1_gf-0.05 gg_mkc-16_mir-0.005_mg-1_gf-0.1 gg_mkc-16_mir-0.005_mg-2_gf-0.005 gg_mkc-16_mir-0.005_mg-2_gf-0.01 gg_mkc-16_mir-0.005_mg-2_gf-0.05 gg_mkc-16_mir-0.005_mg-2_gf-0.1 gg_mkc-16_mir-0.005_mg-4_gf-0.005 gg_mkc-16_mir-0.005_mg-4_gf-0.01 gg_mkc-16_mir-0.005_mg-4_gf-0.05 gg_mkc-16_mir-0.005_mg-4_gf-0.1 gg_mkc-16_mir-0.01_mg-1_gf-0.005 gg_mkc-16_mir-0.01_mg-1_gf-0.01 gg_mkc-16_mir-0.01_mg-1_gf-0.1 gg_mkc-16_mir-0.01_mg-2_gf-0.005 gg_mkc-16_mir-0.01_mg-2_gf-0.01 gg_mkc-16_mir-0.01_mg-2_gf-0.05 gg_mkc-16_mir-0.01_mg-2_gf-0.1 gg_mkc-16_mir-0.01_mg-4_gf-0.005 gg_mkc-16_mir-0.01_mg-4_gf-0.01 gg_mkc-16_mir-0.01_mg-4_gf-0.05 gg_mkc-16_mir-0.01_mg-4_gf-0.1 gg_mkc-16_mir-0.05_mg-1_gf-0.005 gg_mkc-16_mir-0.05_mg-1_gf-0.01 gg_mkc-16_mir-0.05_mg-1_gf-0.05 gg_mkc-16_mir-0.05_mg-1_gf-0.1 gg_mkc-16_mir-0.05_mg-2_gf-0.005 gg_mkc-16_mir-0.05_mg-2_gf-0.01 gg_mkc-16_mir-0.05_mg-2_gf-0.05 gg_mkc-16_mir-0.05_mg-2_gf-0.1 gg_mkc-16_mir-0.05_mg-4_gf-0.005 gg_mkc-16_mir-0.05_mg-4_gf-0.01 gg_mkc-16_mir-0.05_mg-4_gf-0.05 gg_mkc-16_mir-0.05_mg-4_gf-0.1 gg_mkc-16_mir-0.1_mg-1_gf-0.005 gg_mkc-16_mir-0.1_mg-1_gf-0.01 gg_mkc-16_mir-0.1_mg-1_gf-0.05 gg_mkc-16_mir-0.1_mg-1_gf-0.1 gg_mkc-16_mir-0.1_mg-2_gf-0.005 gg_mkc-16_mir-0.1_mg-2_gf-0.01 gg_mkc-16_mir-0.1_mg-2_gf-0.05 gg_mkc-16_mir-0.1_mg-2_gf-0.1 gg_mkc-16_mir-0.1_mg-4_gf-0.005 gg_mkc-16_mir-0.1_mg-4_gf-0.01 gg_mkc-16_mir-0.1_mg-4_gf-0.05 gg_mkc-16_mir-0.1_mg-4_gf-0.1 gg_mkc-1_mir-0.005_mg-1_gf-0.005 gg_mkc-1_mir-0.005_mg-1_gf-0.01 gg_mkc-1_mir-0.005_mg-1_gf-0.05 gg_mkc-1_mir-0.005_mg-1_gf-0.1 gg_mkc-1_mir-0.005_mg-2_gf-0.005 gg_mkc-1_mir-0.005_mg-2_gf-0.01 gg_mkc-1_mir-0.005_mg-2_gf-0.05 gg_mkc-1_mir-0.005_mg-2_gf-0.1 gg_mkc-1_mir-0.005_mg-4_gf-0.005 gg_mkc-1_mir-0.005_mg-4_gf-0.01 gg_mkc-1_mir-0.005_mg-4_gf-0.05 gg_mkc-1_mir-0.005_mg-4_gf-0.1 gg_mkc-1_mir-0.01_mg-1_gf-0.005 gg_mkc-1_mir-0.01_mg-1_gf-0.01 gg_mkc-1_mir-0.01_mg-1_gf-0.05 gg_mkc-1_mir-0.01_mg-1_gf-0.1 gg_mkc-1_mir-0.01_mg-2_gf-0.005 gg_mkc-1_mir-0.01_mg-2_gf-0.01 gg_mkc-1_mir-0.01_mg-2_gf-0.05 gg_mkc-1_mir-0.01_mg-2_gf-0.1 gg_mkc-1_mir-0.01_mg-4_gf-0.005 gg_mkc-1_mir-0.01_mg-4_gf-0.01 gg_mkc-1_mir-0.01_mg-4_gf-0.05 gg_mkc-1_mir-0.01_mg-4_gf-0.1 gg_mkc-1_mir-0.05_mg-1_gf-0.005 gg_mkc-1_mir-0.05_mg-1_gf-0.01 gg_mkc-1_mir-0.05_mg-1_gf-0.05 gg_mkc-1_mir-0.05_mg-1_gf-0.1 gg_mkc-1_mir-0.05_mg-2_gf-0.005 gg_mkc-1_mir-0.05_mg-2_gf-0.01 gg_mkc-1_mir-0.05_mg-2_gf-0.05 gg_mkc-1_mir-0.05_mg-2_gf-0.1 gg_mkc-1_mir-0.05_mg-4_gf-0.005 gg_mkc-1_mir-0.05_mg-4_gf-0.01 gg_mkc-1_mir-0.05_mg-4_gf-0.05 gg_mkc-1_mir-0.05_mg-4_gf-0.1 gg_mkc-1_mir-0.1_mg-1_gf-0.005 gg_mkc-1_mir-0.1_mg-1_gf-0.01 gg_mkc-1_mir-0.1_mg-1_gf-0.05 gg_mkc-1_mir-0.1_mg-1_gf-0.1 gg_mkc-1_mir-0.1_mg-2_gf-0.005 gg_mkc-1_mir-0.1_mg-2_gf-0.01 gg_mkc-1_mir-0.1_mg-2_gf-0.05 gg_mkc-1_mir-0.1_mg-2_gf-0.1 gg_mkc-1_mir-0.1_mg-4_gf-0.005 gg_mkc-1_mir-0.1_mg-4_gf-0.01 gg_mkc-1_mir-0.1_mg-4_gf-0.05 gg_mkc-1_mir-0.1_mg-4_gf-0.1 gg_mkc-2_mir-0.005_mg-1_gf-0.005 gg_mkc-2_mir-0.005_mg-1_gf-0.01 gg_mkc-2_mir-0.005_mg-1_gf-0.05 gg_mkc-2_mir-0.005_mg-1_gf-0.1 gg_mkc-2_mir-0.005_mg-2_gf-0.005 gg_mkc-2_mir-0.005_mg-2_gf-0.01 gg_mkc-2_mir-0.005_mg-2_gf-0.05 gg_mkc-2_mir-0.005_mg-2_gf-0.1 gg_mkc-2_mir-0.005_mg-4_gf-0.005 gg_mkc-2_mir-0.005_mg-4_gf-0.01 gg_mkc-2_mir-0.005_mg-4_gf-0.05 gg_mkc-2_mir-0.005_mg-4_gf-0.1 gg_mkc-2_mir-0.01_mg-1_gf-0.005 gg_mkc-2_mir-0.01_mg-1_gf-0.01 gg_mkc-2_mir-0.01_mg-1_gf-0.05 gg_mkc-2_mir-0.01_mg-1_gf-0.1 gg_mkc-2_mir-0.01_mg-2_gf-0.005 gg_mkc-2_mir-0.01_mg-2_gf-0.01 gg_mkc-2_mir-0.01_mg-2_gf-0.05 gg_mkc-2_mir-0.01_mg-2_gf-0.1 gg_mkc-2_mir-0.01_mg-4_gf-0.005 gg_mkc-2_mir-0.01_mg-4_gf-0.01 gg_mkc-2_mir-0.01_mg-4_gf-0.05 gg_mkc-2_mir-0.01_mg-4_gf-0.1 gg_mkc-2_mir-0.05_mg-1_gf-0.005 gg_mkc-2_mir-0.05_mg-1_gf-0.01 gg_mkc-2_mir-0.05_mg-1_gf-0.05 gg_mkc-2_mir-0.05_mg-1_gf-0.1 gg_mkc-2_mir-0.05_mg-2_gf-0.005 gg_mkc-2_mir-0.05_mg-2_gf-0.01 gg_mkc-2_mir-0.05_mg-2_gf-0.05 gg_mkc-2_mir-0.05_mg-2_gf-0.1 gg_mkc-2_mir-0.05_mg-4_gf-0.005 gg_mkc-2_mir-0.05_mg-4_gf-0.01 gg_mkc-2_mir-0.05_mg-4_gf-0.05 gg_mkc-2_mir-0.05_mg-4_gf-0.1 gg_mkc-2_mir-0.1_mg-1_gf-0.005 gg_mkc-2_mir-0.1_mg-1_gf-0.01 gg_mkc-2_mir-0.1_mg-1_gf-0.05 gg_mkc-2_mir-0.1_mg-1_gf-0.1 gg_mkc-2_mir-0.1_mg-2_gf-0.005 gg_mkc-2_mir-0.1_mg-2_gf-0.01 gg_mkc-2_mir-0.1_mg-2_gf-0.05 gg_mkc-2_mir-0.1_mg-2_gf-0.1 gg_mkc-2_mir-0.1_mg-4_gf-0.005 gg_mkc-2_mir-0.1_mg-4_gf-0.01 gg_mkc-2_mir-0.1_mg-4_gf-0.05 gg_mkc-2_mir-0.1_mg-4_gf-0.1 gg_mkc-32_mir-0.005_mg-1_gf-0.005 gg_mkc-32_mir-0.005_mg-1_gf-0.01 gg_mkc-32_mir-0.005_mg-1_gf-0.05 gg_mkc-32_mir-0.005_mg-1_gf-0.1 gg_mkc-32_mir-0.005_mg-2_gf-0.005 gg_mkc-32_mir-0.005_mg-2_gf-0.01 gg_mkc-32_mir-0.005_mg-2_gf-0.05 gg_mkc-32_mir-0.005_mg-2_gf-0.1 gg_mkc-32_mir-0.005_mg-4_gf-0.005 gg_mkc-32_mir-0.005_mg-4_gf-0.01 gg_mkc-32_mir-0.005_mg-4_gf-0.05 gg_mkc-32_mir-0.005_mg-4_gf-0.1 gg_mkc-32_mir-0.01_mg-1_gf-0.005 gg_mkc-32_mir-0.01_mg-1_gf-0.01 gg_mkc-32_mir-0.01_mg-1_gf-0.05 gg_mkc-32_mir-0.01_mg-1_gf-0.1 gg_mkc-32_mir-0.01_mg-2_gf-0.005 gg_mkc-32_mir-0.01_mg-2_gf-0.01 gg_mkc-32_mir-0.01_mg-2_gf-0.05 gg_mkc-32_mir-0.01_mg-2_gf-0.1 gg_mkc-32_mir-0.01_mg-4_gf-0.005 gg_mkc-32_mir-0.01_mg-4_gf-0.01 gg_mkc-32_mir-0.01_mg-4_gf-0.05 gg_mkc-32_mir-0.01_mg-4_gf-0.1 gg_mkc-32_mir-0.05_mg-1_gf-0.005 gg_mkc-32_mir-0.05_mg-1_gf-0.01 gg_mkc-32_mir-0.05_mg-1_gf-0.05 gg_mkc-32_mir-0.05_mg-1_gf-0.1 gg_mkc-32_mir-0.05_mg-2_gf-0.005 gg_mkc-32_mir-0.05_mg-2_gf-0.01 gg_mkc-32_mir-0.05_mg-2_gf-0.05 gg_mkc-32_mir-0.05_mg-2_gf-0.1 gg_mkc-32_mir-0.05_mg-4_gf-0.005 gg_mkc-32_mir-0.05_mg-4_gf-0.01 gg_mkc-32_mir-0.05_mg-4_gf-0.05 gg_mkc-32_mir-0.05_mg-4_gf-0.1 gg_mkc-32_mir-0.1_mg-1_gf-0.005 gg_mkc-32_mir-0.1_mg-1_gf-0.01 gg_mkc-32_mir-0.1_mg-1_gf-0.05 gg_mkc-32_mir-0.1_mg-1_gf-0.1 gg_mkc-32_mir-0.1_mg-2_gf-0.005 gg_mkc-32_mir-0.1_mg-2_gf-0.01 gg_mkc-32_mir-0.1_mg-2_gf-0.05 gg_mkc-32_mir-0.1_mg-2_gf-0.1 gg_mkc-32_mir-0.1_mg-4_gf-0.005 gg_mkc-32_mir-0.1_mg-4_gf-0.01 gg_mkc-32_mir-0.1_mg-4_gf-0.05 gg_mkc-32_mir-0.1_mg-4_gf-0.1 gg_mkc-4_mir-0.005_mg-1_gf-0.005 gg_mkc-4_mir-0.005_mg-1_gf-0.01 gg_mkc-4_mir-0.005_mg-1_gf-0.05 gg_mkc-4_mir-0.005_mg-1_gf-0.1 gg_mkc-4_mir-0.005_mg-2_gf-0.005 gg_mkc-4_mir-0.005_mg-2_gf-0.01 gg_mkc-4_mir-0.005_mg-2_gf-0.05 gg_mkc-4_mir-0.005_mg-2_gf-0.1 gg_mkc-4_mir-0.005_mg-4_gf-0.005 gg_mkc-4_mir-0.005_mg-4_gf-0.05 gg_mkc-4_mir-0.005_mg-4_gf-0.1 gg_mkc-4_mir-0.01_mg-1_gf-0.005 gg_mkc-4_mir-0.01_mg-1_gf-0.01 gg_mkc-4_mir-0.01_mg-1_gf-0.05 gg_mkc-4_mir-0.01_mg-1_gf-0.1 gg_mkc-4_mir-0.01_mg-2_gf-0.005 gg_mkc-4_mir-0.01_mg-2_gf-0.01 gg_mkc-4_mir-0.01_mg-2_gf-0.05 gg_mkc-4_mir-0.01_mg-2_gf-0.1 gg_mkc-4_mir-0.01_mg-4_gf-0.005 gg_mkc-4_mir-0.01_mg-4_gf-0.01 gg_mkc-4_mir-0.01_mg-4_gf-0.05 gg_mkc-4_mir-0.01_mg-4_gf-0.1 gg_mkc-4_mir-0.05_mg-1_gf-0.005 gg_mkc-4_mir-0.05_mg-1_gf-0.01 gg_mkc-4_mir-0.05_mg-1_gf-0.05 gg_mkc-4_mir-0.05_mg-1_gf-0.1 gg_mkc-4_mir-0.05_mg-2_gf-0.005 gg_mkc-4_mir-0.05_mg-2_gf-0.01 gg_mkc-4_mir-0.05_mg-2_gf-0.05 gg_mkc-4_mir-0.05_mg-2_gf-0.1 gg_mkc-4_mir-0.05_mg-4_gf-0.005 gg_mkc-4_mir-0.05_mg-4_gf-0.01 gg_mkc-4_mir-0.05_mg-4_gf-0.05 gg_mkc-4_mir-0.05_mg-4_gf-0.1 gg_mkc-4_mir-0.1_mg-1_gf-0.005 gg_mkc-4_mir-0.1_mg-1_gf-0.01 gg_mkc-4_mir-0.1_mg-1_gf-0.05 gg_mkc-4_mir-0.1_mg-1_gf-0.1 gg_mkc-4_mir-0.1_mg-2_gf-0.005 gg_mkc-4_mir-0.1_mg-2_gf-0.01 gg_mkc-4_mir-0.1_mg-2_gf-0.05 gg_mkc-4_mir-0.1_mg-2_gf-0.1 gg_mkc-4_mir-0.1_mg-4_gf-0.005 gg_mkc-4_mir-0.1_mg-4_gf-0.01 gg_mkc-4_mir-0.1_mg-4_gf-0.05 gg_mkc-4_mir-0.1_mg-4_gf-0.1 gg_mkc-8_mir-0.005_mg-1_gf-0.005 gg_mkc-8_mir-0.005_mg-1_gf-0.01 gg_mkc-8_mir-0.005_mg-1_gf-0.05 gg_mkc-8_mir-0.005_mg-1_gf-0.1 gg_mkc-8_mir-0.005_mg-2_gf-0.005 gg_mkc-8_mir-0.005_mg-2_gf-0.01 gg_mkc-8_mir-0.005_mg-2_gf-0.05 gg_mkc-8_mir-0.005_mg-2_gf-0.1 gg_mkc-8_mir-0.005_mg-4_gf-0.005 gg_mkc-8_mir-0.005_mg-4_gf-0.01 gg_mkc-8_mir-0.005_mg-4_gf-0.05 gg_mkc-8_mir-0.005_mg-4_gf-0.1 gg_mkc-8_mir-0.01_mg-1_gf-0.005 gg_mkc-8_mir-0.01_mg-1_gf-0.01 gg_mkc-8_mir-0.01_mg-1_gf-0.05 gg_mkc-8_mir-0.01_mg-1_gf-0.1 gg_mkc-8_mir-0.01_mg-2_gf-0.005 gg_mkc-8_mir-0.01_mg-2_gf-0.01 gg_mkc-8_mir-0.01_mg-2_gf-0.05 gg_mkc-8_mir-0.01_mg-2_gf-0.1 gg_mkc-8_mir-0.01_mg-4_gf-0.005 gg_mkc-8_mir-0.01_mg-4_gf-0.01 gg_mkc-8_mir-0.01_mg-4_gf-0.05 gg_mkc-8_mir-0.01_mg-4_gf-0.1 gg_mkc-8_mir-0.05_mg-1_gf-0.005 gg_mkc-8_mir-0.05_mg-1_gf-0.01 gg_mkc-8_mir-0.05_mg-1_gf-0.05 gg_mkc-8_mir-0.05_mg-1_gf-0.1 gg_mkc-8_mir-0.05_mg-2_gf-0.005 gg_mkc-8_mir-0.05_mg-2_gf-0.01 gg_mkc-8_mir-0.05_mg-2_gf-0.05 gg_mkc-8_mir-0.05_mg-2_gf-0.1 gg_mkc-8_mir-0.05_mg-4_gf-0.005 gg_mkc-8_mir-0.05_mg-4_gf-0.01 gg_mkc-8_mir-0.05_mg-4_gf-0.05 gg_mkc-8_mir-0.05_mg-4_gf-0.1 gg_mkc-8_mir-0.1_mg-1_gf-0.005 gg_mkc-8_mir-0.1_mg-1_gf-0.01 gg_mkc-8_mir-0.1_mg-1_gf-0.05 gg_mkc-8_mir-0.1_mg-1_gf-0.1 gg_mkc-8_mir-0.1_mg-2_gf-0.005 gg_mkc-8_mir-0.1_mg-2_gf-0.01 gg_mkc-8_mir-0.1_mg-2_gf-0.05 gg_mkc-8_mir-0.1_mg-2_gf-0.1 gg_mkc-8_mir-0.1_mg-4_gf-0.005 gg_mkc-8_mir-0.1_mg-4_gf-0.01 gg_mkc-8_mir-0.1_mg-4_gf-0.1 --transcripts ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-4_gf-0.1.Trinity-GG.fasta --reference /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --gtf /home/kalavatt/genomes/sacCer3/Ensembl/108/gtf/Saccharomyces_cerevisiae.R64-1-1.108.gtf --gmap_index /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap --strand_specific --left_reads fastqs/merged_Q_IP_UTK_R1.fq.gz --right_reads fastqs/merged_Q_IP_UTK_R3.fq.gz --output_dir outfiles_rnaQUAST-test_Trinity-GG_Q-N/ --busco_lineage BUSCO/saccharomycetes_odb10.2020-08-05.tar.gz --gene_mark --disable_infer_genes --disable_infer_transcripts -``` - -And here is how I called rnaQUAST from the command line (using variables and arrays): - -```txt -rnaQUAST.py \ - -t "${SLURM_CPUS_ON_NODE}" \ - --labels ${n_GG[*]} \ - --transcripts ${f_GG[*]} \ - --reference "${p_ref}/${f_ref}" \ - --gtf "${p_gtf}/${f_gtf}" \ - --gmap_index "${p_gmap}/${d_gmap}" \ - --strand_specific \ - --left_reads "fastqs/merged_Q_IP_UTK_R1.fq.gz" \ - --right_reads "fastqs/merged_Q_IP_UTK_R3.fq.gz" \ - --output_dir "outfiles_rnaQUAST-test_Trinity-GG_Q-N/" \ - --busco_lineage "BUSCO/saccharomycetes_odb10.2020-08-05.tar.gz" \ - --gene_mark \ - --disable_infer_genes \ - --disable_infer_transcripts -``` - -I am thinking that this hang-up is not something real—although I am not sure. What could be causing the potential hang-up? The symlinked nature of the symlinked fasta assemblies? The compressed BUSCO database? - -I posted an issue on the [rnaQUAST GitHub repo](https://github.com/ablab/rnaquast) [here](https://github.com/ablab/rnaquast/issues/14). - -In looking over other issues, I saw a comment from the author to run the most recent version of rnaQUAST, version 2.2.2 ([link](https://github.com/ablab/rnaquast/issues/13#issuecomment-1112130505)); in reviewing my `rnaQUAST.log`, I see that rnaQUAST is version 2.0.1, which at this point is some ~3 years old. Apparently, the conda installation selected an older version of rnaQUAST? Indeed, that is the case: - -```txt - rnaquast-2.0.1 | 0 4.9 MB bioconda -``` - -What are the versions available via conda/mamba? -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -mamba search -c bioconda rnaquast -``` - -```txt - - __ __ __ __ - / \ / \ / \ / \ - / \/ \/ \/ \ -███████████████/ /██/ /██/ /██/ /████████████████████████ - / / \ / \ / \ / \ \____ - / / \_/ \_/ \_/ \ o \__, - / _/ \_____/ ` - |/ - ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ - ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ - ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ - ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ - ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ - ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝ - - mamba (1.3.1) supported by @QuantStack - - GitHub: https://github.com/mamba-org/mamba - Twitter: https://twitter.com/QuantStack - -█████████████████████████████████████████████████████████████ - -Loading channels: done -# Name Version Build Channel -rnaquast 1.5.1 0 bioconda -rnaquast 2.0.0 0 bioconda -rnaquast 2.0.1 0 bioconda -rnaquast 2.1.0 0 bioconda -rnaquast 2.1.0 1 bioconda -rnaquast 2.2.0 0 bioconda -rnaquast 2.2.0 h9ee0642_1 bioconda -rnaquast 2.2.0 h9ee0642_2 bioconda -rnaquast 2.2.1 h9ee0642_0 bioconda -``` - -For some reason, conda/mamba defaulted to installing an outdated version of the program... -
-
- - -### Next steps (2023-0220, 11:10 a.m.) -
-Notes: Next steps (2023-0220, 11:10 a.m.) - -
- -1. Create a new rnaQUAST environment centered on `rnaquast=2.2.1=h9ee0642_0` -2. Invoke rnaQUAST using only one assembly fasta—just go with, say, `./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta` together with label `gg_mkc-16_mir-0.005_mg-1_gf-0.005` -3. Run four pilot experiments with the above assembly: - - One using a symlinked file *without* `--busco_lineage` and `--gene_mark` - - One using a symlinked file *with* `--busco_lineage` and `--gene_mark` - - Per [this message from the rnaQUAST developers](https://github.com/ablab/rnaquast/issues/14#issuecomment-1437537096), one without providing reads and *without* `--busco_lineage` and `--gene_mark` - - Per [this message from the rnaQUAST developers](https://github.com/ablab/rnaquast/issues/14#issuecomment-1437537096), one without providing reads and *with* `--busco_lineage` and `--gene_mark` - -In general, the invocations should be like the following: -e.g., *without `--busco_lineage` and `--gene_mark`* -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -rnaQUAST.py \ - -t "${SLURM_CPUS_ON_NODE}" \ - --labels ${n_GG[*]} \ - --transcripts ${f_GG[*]} \ - --reference "${p_ref}/${f_ref}" \ - --gtf "${p_gtf}/${f_gtf}" \ - --gmap_index "${p_gmap}/${d_gmap}" \ - --strand_specific \ - --left_reads "fastqs/merged_Q_IP_UTK_R1.fq.gz" \ - --right_reads "fastqs/merged_Q_IP_UTK_R3.fq.gz" \ - --output_dir "outfiles_rnaQUAST-test_Trinity-GG_Q-N/" \ - --disable_infer_genes \ - --disable_infer_transcripts -``` - -e.g., *with `--busco_lineage` and `--gene_mark`* -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -rnaQUAST.py \ - -t "${SLURM_CPUS_ON_NODE}" \ - --labels ${n_GG[*]} \ - --transcripts ${f_GG[*]} \ - --reference "${p_ref}/${f_ref}" \ - --gtf "${p_gtf}/${f_gtf}" \ - --gmap_index "${p_gmap}/${d_gmap}" \ - --strand_specific \ - --left_reads "fastqs/merged_Q_IP_UTK_R1.fq.gz" \ - --right_reads "fastqs/merged_Q_IP_UTK_R3.fq.gz" \ - --output_dir "outfiles_rnaQUAST-test_Trinity-GG_Q-N/" \ - --busco_lineage "BUSCO/saccharomycetes_odb10" \ - --gene_mark \ - --disable_infer_genes \ - --disable_infer_transcripts -``` -
-
- - -### Kill the initial run (2023-0220, 12:00 p.m.) -
-Notes: Kill the initial run (2023-0220, 12:00 p.m.) - -
- -Kill the job and `rm` outfiles at 12:00 p.m., 2023-0220; decided to do this because I accidentally used the same outdirectory in my initial call to run 1 below - -STDOUT at the time of killing the job: -```txt -/home/kalavatt/miniconda3/envs/rnaquast_env/share/rnaquast-2.0.1-0/rnaQUAST.py -t 32 --labels gg_mkc-16_mir-0.005_mg-1_gf-0.005 gg_mkc-16_mir-0.005_mg-1_gf-0.01 gg_mkc-16_mir-0.005_mg-1_gf-0.05 gg_mkc-16_mir-0.005_mg-1_gf-0.1 gg_mkc-16_mir-0.005_mg-2_gf-0.005 gg_mkc-16_mir-0.005_mg-2_gf-0.01 gg_mkc-16_mir-0.005_mg-2_gf-0.05 gg_mkc-16_mir-0.005_mg-2_gf-0.1 gg_mkc-16_mir-0.005_mg-4_gf-0.005 gg_mkc-16_mir-0.005_mg-4_gf-0.01 gg_mkc-16_mir-0.005_mg-4_gf-0.05 gg_mkc-16_mir-0.005_mg-4_gf-0.1 gg_mkc-16_mir-0.01_mg-1_gf-0.005 gg_mkc-16_mir-0.01_mg-1_gf-0.01 gg_mkc-16_mir-0.01_mg-1_gf-0.1 gg_mkc-16_mir-0.01_mg-2_gf-0.005 gg_mkc-16_mir-0.01_mg-2_gf-0.01 gg_mkc-16_mir-0.01_mg-2_gf-0.05 gg_mkc-16_mir-0.01_mg-2_gf-0.1 gg_mkc-16_mir-0.01_mg-4_gf-0.005 gg_mkc-16_mir-0.01_mg-4_gf-0.01 gg_mkc-16_mir-0.01_mg-4_gf-0.05 gg_mkc-16_mir-0.01_mg-4_gf-0.1 gg_mkc-16_mir-0.05_mg-1_gf-0.005 gg_mkc-16_mir-0.05_mg-1_gf-0.01 gg_mkc-16_mir-0.05_mg-1_gf-0.05 gg_mkc-16_mir-0.05_mg-1_gf-0.1 gg_mkc-16_mir-0.05_mg-2_gf-0.005 gg_mkc-16_mir-0.05_mg-2_gf-0.01 gg_mkc-16_mir-0.05_mg-2_gf-0.05 gg_mkc-16_mir-0.05_mg-2_gf-0.1 gg_mkc-16_mir-0.05_mg-4_gf-0.005 gg_mkc-16_mir-0.05_mg-4_gf-0.01 gg_mkc-16_mir-0.05_mg-4_gf-0.05 gg_mkc-16_mir-0.05_mg-4_gf-0.1 gg_mkc-16_mir-0.1_mg-1_gf-0.005 gg_mkc-16_mir-0.1_mg-1_gf-0.01 gg_mkc-16_mir-0.1_mg-1_gf-0.05 gg_mkc-16_mir-0.1_mg-1_gf-0.1 gg_mkc-16_mir-0.1_mg-2_gf-0.005 gg_mkc-16_mir-0.1_mg-2_gf-0.01 gg_mkc-16_mir-0.1_mg-2_gf-0.05 gg_mkc-16_mir-0.1_mg-2_gf-0.1 gg_mkc-16_mir-0.1_mg-4_gf-0.005 gg_mkc-16_mir-0.1_mg-4_gf-0.01 gg_mkc-16_mir-0.1_mg-4_gf-0.05 gg_mkc-16_mir-0.1_mg-4_gf-0.1 gg_mkc-1_mir-0.005_mg-1_gf-0.005 gg_mkc-1_mir-0.005_mg-1_gf-0.01 gg_mkc-1_mir-0.005_mg-1_gf-0.05 gg_mkc-1_mir-0.005_mg-1_gf-0.1 gg_mkc-1_mir-0.005_mg-2_gf-0.005 gg_mkc-1_mir-0.005_mg-2_gf-0.01 gg_mkc-1_mir-0.005_mg-2_gf-0.05 gg_mkc-1_mir-0.005_mg-2_gf-0.1 gg_mkc-1_mir-0.005_mg-4_gf-0.005 gg_mkc-1_mir-0.005_mg-4_gf-0.01 gg_mkc-1_mir-0.005_mg-4_gf-0.05 gg_mkc-1_mir-0.005_mg-4_gf-0.1 gg_mkc-1_mir-0.01_mg-1_gf-0.005 gg_mkc-1_mir-0.01_mg-1_gf-0.01 gg_mkc-1_mir-0.01_mg-1_gf-0.05 gg_mkc-1_mir-0.01_mg-1_gf-0.1 gg_mkc-1_mir-0.01_mg-2_gf-0.005 gg_mkc-1_mir-0.01_mg-2_gf-0.01 gg_mkc-1_mir-0.01_mg-2_gf-0.05 gg_mkc-1_mir-0.01_mg-2_gf-0.1 gg_mkc-1_mir-0.01_mg-4_gf-0.005 gg_mkc-1_mir-0.01_mg-4_gf-0.01 gg_mkc-1_mir-0.01_mg-4_gf-0.05 gg_mkc-1_mir-0.01_mg-4_gf-0.1 gg_mkc-1_mir-0.05_mg-1_gf-0.005 gg_mkc-1_mir-0.05_mg-1_gf-0.01 gg_mkc-1_mir-0.05_mg-1_gf-0.05 gg_mkc-1_mir-0.05_mg-1_gf-0.1 gg_mkc-1_mir-0.05_mg-2_gf-0.005 gg_mkc-1_mir-0.05_mg-2_gf-0.01 gg_mkc-1_mir-0.05_mg-2_gf-0.05 gg_mkc-1_mir-0.05_mg-2_gf-0.1 gg_mkc-1_mir-0.05_mg-4_gf-0.005 gg_mkc-1_mir-0.05_mg-4_gf-0.01 gg_mkc-1_mir-0.05_mg-4_gf-0.05 gg_mkc-1_mir-0.05_mg-4_gf-0.1 gg_mkc-1_mir-0.1_mg-1_gf-0.005 gg_mkc-1_mir-0.1_mg-1_gf-0.01 gg_mkc-1_mir-0.1_mg-1_gf-0.05 gg_mkc-1_mir-0.1_mg-1_gf-0.1 gg_mkc-1_mir-0.1_mg-2_gf-0.005 gg_mkc-1_mir-0.1_mg-2_gf-0.01 gg_mkc-1_mir-0.1_mg-2_gf-0.05 gg_mkc-1_mir-0.1_mg-2_gf-0.1 gg_mkc-1_mir-0.1_mg-4_gf-0.005 gg_mkc-1_mir-0.1_mg-4_gf-0.01 gg_mkc-1_mir-0.1_mg-4_gf-0.05 gg_mkc-1_mir-0.1_mg-4_gf-0.1 gg_mkc-2_mir-0.005_mg-1_gf-0.005 gg_mkc-2_mir-0.005_mg-1_gf-0.01 gg_mkc-2_mir-0.005_mg-1_gf-0.05 gg_mkc-2_mir-0.005_mg-1_gf-0.1 gg_mkc-2_mir-0.005_mg-2_gf-0.005 gg_mkc-2_mir-0.005_mg-2_gf-0.01 gg_mkc-2_mir-0.005_mg-2_gf-0.05 gg_mkc-2_mir-0.005_mg-2_gf-0.1 gg_mkc-2_mir-0.005_mg-4_gf-0.005 gg_mkc-2_mir-0.005_mg-4_gf-0.01 gg_mkc-2_mir-0.005_mg-4_gf-0.05 gg_mkc-2_mir-0.005_mg-4_gf-0.1 gg_mkc-2_mir-0.01_mg-1_gf-0.005 gg_mkc-2_mir-0.01_mg-1_gf-0.01 gg_mkc-2_mir-0.01_mg-1_gf-0.05 gg_mkc-2_mir-0.01_mg-1_gf-0.1 gg_mkc-2_mir-0.01_mg-2_gf-0.005 gg_mkc-2_mir-0.01_mg-2_gf-0.01 gg_mkc-2_mir-0.01_mg-2_gf-0.05 gg_mkc-2_mir-0.01_mg-2_gf-0.1 gg_mkc-2_mir-0.01_mg-4_gf-0.005 gg_mkc-2_mir-0.01_mg-4_gf-0.01 gg_mkc-2_mir-0.01_mg-4_gf-0.05 gg_mkc-2_mir-0.01_mg-4_gf-0.1 gg_mkc-2_mir-0.05_mg-1_gf-0.005 gg_mkc-2_mir-0.05_mg-1_gf-0.01 gg_mkc-2_mir-0.05_mg-1_gf-0.05 gg_mkc-2_mir-0.05_mg-1_gf-0.1 gg_mkc-2_mir-0.05_mg-2_gf-0.005 gg_mkc-2_mir-0.05_mg-2_gf-0.01 gg_mkc-2_mir-0.05_mg-2_gf-0.05 gg_mkc-2_mir-0.05_mg-2_gf-0.1 gg_mkc-2_mir-0.05_mg-4_gf-0.005 gg_mkc-2_mir-0.05_mg-4_gf-0.01 gg_mkc-2_mir-0.05_mg-4_gf-0.05 gg_mkc-2_mir-0.05_mg-4_gf-0.1 gg_mkc-2_mir-0.1_mg-1_gf-0.005 gg_mkc-2_mir-0.1_mg-1_gf-0.01 gg_mkc-2_mir-0.1_mg-1_gf-0.05 gg_mkc-2_mir-0.1_mg-1_gf-0.1 gg_mkc-2_mir-0.1_mg-2_gf-0.005 gg_mkc-2_mir-0.1_mg-2_gf-0.01 gg_mkc-2_mir-0.1_mg-2_gf-0.05 gg_mkc-2_mir-0.1_mg-2_gf-0.1 gg_mkc-2_mir-0.1_mg-4_gf-0.005 gg_mkc-2_mir-0.1_mg-4_gf-0.01 gg_mkc-2_mir-0.1_mg-4_gf-0.05 gg_mkc-2_mir-0.1_mg-4_gf-0.1 gg_mkc-32_mir-0.005_mg-1_gf-0.005 gg_mkc-32_mir-0.005_mg-1_gf-0.01 gg_mkc-32_mir-0.005_mg-1_gf-0.05 gg_mkc-32_mir-0.005_mg-1_gf-0.1 gg_mkc-32_mir-0.005_mg-2_gf-0.005 gg_mkc-32_mir-0.005_mg-2_gf-0.01 gg_mkc-32_mir-0.005_mg-2_gf-0.05 gg_mkc-32_mir-0.005_mg-2_gf-0.1 gg_mkc-32_mir-0.005_mg-4_gf-0.005 gg_mkc-32_mir-0.005_mg-4_gf-0.01 gg_mkc-32_mir-0.005_mg-4_gf-0.05 gg_mkc-32_mir-0.005_mg-4_gf-0.1 gg_mkc-32_mir-0.01_mg-1_gf-0.005 gg_mkc-32_mir-0.01_mg-1_gf-0.01 gg_mkc-32_mir-0.01_mg-1_gf-0.05 gg_mkc-32_mir-0.01_mg-1_gf-0.1 gg_mkc-32_mir-0.01_mg-2_gf-0.005 gg_mkc-32_mir-0.01_mg-2_gf-0.01 gg_mkc-32_mir-0.01_mg-2_gf-0.05 gg_mkc-32_mir-0.01_mg-2_gf-0.1 gg_mkc-32_mir-0.01_mg-4_gf-0.005 gg_mkc-32_mir-0.01_mg-4_gf-0.01 gg_mkc-32_mir-0.01_mg-4_gf-0.05 gg_mkc-32_mir-0.01_mg-4_gf-0.1 gg_mkc-32_mir-0.05_mg-1_gf-0.005 gg_mkc-32_mir-0.05_mg-1_gf-0.01 gg_mkc-32_mir-0.05_mg-1_gf-0.05 gg_mkc-32_mir-0.05_mg-1_gf-0.1 gg_mkc-32_mir-0.05_mg-2_gf-0.005 gg_mkc-32_mir-0.05_mg-2_gf-0.01 gg_mkc-32_mir-0.05_mg-2_gf-0.05 gg_mkc-32_mir-0.05_mg-2_gf-0.1 gg_mkc-32_mir-0.05_mg-4_gf-0.005 gg_mkc-32_mir-0.05_mg-4_gf-0.01 gg_mkc-32_mir-0.05_mg-4_gf-0.05 gg_mkc-32_mir-0.05_mg-4_gf-0.1 gg_mkc-32_mir-0.1_mg-1_gf-0.005 gg_mkc-32_mir-0.1_mg-1_gf-0.01 gg_mkc-32_mir-0.1_mg-1_gf-0.05 gg_mkc-32_mir-0.1_mg-1_gf-0.1 gg_mkc-32_mir-0.1_mg-2_gf-0.005 gg_mkc-32_mir-0.1_mg-2_gf-0.01 gg_mkc-32_mir-0.1_mg-2_gf-0.05 gg_mkc-32_mir-0.1_mg-2_gf-0.1 gg_mkc-32_mir-0.1_mg-4_gf-0.005 gg_mkc-32_mir-0.1_mg-4_gf-0.01 gg_mkc-32_mir-0.1_mg-4_gf-0.05 gg_mkc-32_mir-0.1_mg-4_gf-0.1 gg_mkc-4_mir-0.005_mg-1_gf-0.005 gg_mkc-4_mir-0.005_mg-1_gf-0.01 gg_mkc-4_mir-0.005_mg-1_gf-0.05 gg_mkc-4_mir-0.005_mg-1_gf-0.1 gg_mkc-4_mir-0.005_mg-2_gf-0.005 gg_mkc-4_mir-0.005_mg-2_gf-0.01 gg_mkc-4_mir-0.005_mg-2_gf-0.05 gg_mkc-4_mir-0.005_mg-2_gf-0.1 gg_mkc-4_mir-0.005_mg-4_gf-0.005 gg_mkc-4_mir-0.005_mg-4_gf-0.05 gg_mkc-4_mir-0.005_mg-4_gf-0.1 gg_mkc-4_mir-0.01_mg-1_gf-0.005 gg_mkc-4_mir-0.01_mg-1_gf-0.01 gg_mkc-4_mir-0.01_mg-1_gf-0.05 gg_mkc-4_mir-0.01_mg-1_gf-0.1 gg_mkc-4_mir-0.01_mg-2_gf-0.005 gg_mkc-4_mir-0.01_mg-2_gf-0.01 gg_mkc-4_mir-0.01_mg-2_gf-0.05 gg_mkc-4_mir-0.01_mg-2_gf-0.1 gg_mkc-4_mir-0.01_mg-4_gf-0.005 gg_mkc-4_mir-0.01_mg-4_gf-0.01 gg_mkc-4_mir-0.01_mg-4_gf-0.05 gg_mkc-4_mir-0.01_mg-4_gf-0.1 gg_mkc-4_mir-0.05_mg-1_gf-0.005 gg_mkc-4_mir-0.05_mg-1_gf-0.01 gg_mkc-4_mir-0.05_mg-1_gf-0.05 gg_mkc-4_mir-0.05_mg-1_gf-0.1 gg_mkc-4_mir-0.05_mg-2_gf-0.005 gg_mkc-4_mir-0.05_mg-2_gf-0.01 gg_mkc-4_mir-0.05_mg-2_gf-0.05 gg_mkc-4_mir-0.05_mg-2_gf-0.1 gg_mkc-4_mir-0.05_mg-4_gf-0.005 gg_mkc-4_mir-0.05_mg-4_gf-0.01 gg_mkc-4_mir-0.05_mg-4_gf-0.05 gg_mkc-4_mir-0.05_mg-4_gf-0.1 gg_mkc-4_mir-0.1_mg-1_gf-0.005 gg_mkc-4_mir-0.1_mg-1_gf-0.01 gg_mkc-4_mir-0.1_mg-1_gf-0.05 gg_mkc-4_mir-0.1_mg-1_gf-0.1 gg_mkc-4_mir-0.1_mg-2_gf-0.005 gg_mkc-4_mir-0.1_mg-2_gf-0.01 gg_mkc-4_mir-0.1_mg-2_gf-0.05 gg_mkc-4_mir-0.1_mg-2_gf-0.1 gg_mkc-4_mir-0.1_mg-4_gf-0.005 gg_mkc-4_mir-0.1_mg-4_gf-0.01 gg_mkc-4_mir-0.1_mg-4_gf-0.05 gg_mkc-4_mir-0.1_mg-4_gf-0.1 gg_mkc-8_mir-0.005_mg-1_gf-0.005 gg_mkc-8_mir-0.005_mg-1_gf-0.01 gg_mkc-8_mir-0.005_mg-1_gf-0.05 gg_mkc-8_mir-0.005_mg-1_gf-0.1 gg_mkc-8_mir-0.005_mg-2_gf-0.005 gg_mkc-8_mir-0.005_mg-2_gf-0.01 gg_mkc-8_mir-0.005_mg-2_gf-0.05 gg_mkc-8_mir-0.005_mg-2_gf-0.1 gg_mkc-8_mir-0.005_mg-4_gf-0.005 gg_mkc-8_mir-0.005_mg-4_gf-0.01 gg_mkc-8_mir-0.005_mg-4_gf-0.05 gg_mkc-8_mir-0.005_mg-4_gf-0.1 gg_mkc-8_mir-0.01_mg-1_gf-0.005 gg_mkc-8_mir-0.01_mg-1_gf-0.01 gg_mkc-8_mir-0.01_mg-1_gf-0.05 gg_mkc-8_mir-0.01_mg-1_gf-0.1 gg_mkc-8_mir-0.01_mg-2_gf-0.005 gg_mkc-8_mir-0.01_mg-2_gf-0.01 gg_mkc-8_mir-0.01_mg-2_gf-0.05 gg_mkc-8_mir-0.01_mg-2_gf-0.1 gg_mkc-8_mir-0.01_mg-4_gf-0.005 gg_mkc-8_mir-0.01_mg-4_gf-0.01 gg_mkc-8_mir-0.01_mg-4_gf-0.05 gg_mkc-8_mir-0.01_mg-4_gf-0.1 gg_mkc-8_mir-0.05_mg-1_gf-0.005 gg_mkc-8_mir-0.05_mg-1_gf-0.01 gg_mkc-8_mir-0.05_mg-1_gf-0.05 gg_mkc-8_mir-0.05_mg-1_gf-0.1 gg_mkc-8_mir-0.05_mg-2_gf-0.005 gg_mkc-8_mir-0.05_mg-2_gf-0.01 gg_mkc-8_mir-0.05_mg-2_gf-0.05 gg_mkc-8_mir-0.05_mg-2_gf-0.1 gg_mkc-8_mir-0.05_mg-4_gf-0.005 gg_mkc-8_mir-0.05_mg-4_gf-0.01 gg_mkc-8_mir-0.05_mg-4_gf-0.05 gg_mkc-8_mir-0.05_mg-4_gf-0.1 gg_mkc-8_mir-0.1_mg-1_gf-0.005 gg_mkc-8_mir-0.1_mg-1_gf-0.01 gg_mkc-8_mir-0.1_mg-1_gf-0.05 gg_mkc-8_mir-0.1_mg-1_gf-0.1 gg_mkc-8_mir-0.1_mg-2_gf-0.005 gg_mkc-8_mir-0.1_mg-2_gf-0.01 gg_mkc-8_mir-0.1_mg-2_gf-0.05 gg_mkc-8_mir-0.1_mg-2_gf-0.1 gg_mkc-8_mir-0.1_mg-4_gf-0.005 gg_mkc-8_mir-0.1_mg-4_gf-0.01 gg_mkc-8_mir-0.1_mg-4_gf-0.1 --transcripts ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.01_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.05_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.1_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.005_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.01_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.05_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-1_mir-0.1_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.005_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.01_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.05_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-2_mir-0.1_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.005_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.01_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.05_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-32_mir-0.1_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.005_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.01_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.05_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-4_mir-0.1_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.005_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.01_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-4_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.05_mg-4_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-1_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-1_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-1_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-1_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-2_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-2_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-2_gf-0.05.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-2_gf-0.1.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-4_gf-0.005.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-4_gf-0.01.Trinity-GG.fasta ./Trinity_GG.Q_N/trinity-gg_mkc-8_mir-0.1_mg-4_gf-0.1.Trinity-GG.fasta --reference /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --gtf /home/kalavatt/genomes/sacCer3/Ensembl/108/gtf/Saccharomyces_cerevisiae.R64-1-1.108.gtf --gmap_index /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap --strand_specific --left_reads fastqs/merged_Q_IP_UTK_R1.fq.gz --right_reads fastqs/merged_Q_IP_UTK_R3.fq.gz --output_dir outfiles_rnaQUAST-test_Trinity-GG_Q-N/ --busco_lineage BUSCO/saccharomycetes_odb10.2020-08-05.tar.gz --gene_mark --disable_infer_genes --disable_infer_transcripts - -rnaQUAST version: 2.0.1 - -System information: - OS: Linux-4.15.0-192-generic-x86_64-with-debian-buster-sid (linux_64) - Python version: 3.6.13 - CPUs number: 36 - -External tools: - matplotlib version: 3.3.4 - joblib version: 1.0.1 - gffutils version: 0.11.1 - blastn version: 2.5.0+ - makeblastdb version: 2.5.0+ - gmap version: 2021-08-25 - -Started: 2023-02-18 17:49:38 - -Logging to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/logs/rnaQUAST.log - -2023-02-18 17:49:39 -Getting reference... -Done. -Using strand specific transcripts... - -2023-02-18 17:49:39 -Creating sqlite3 db by gffutils... -2023-02-18 17:49:43,397 - INFO - Committing changes: 41000 features -2023-02-18 17:49:43,691 - INFO - Populating features table and first-order relations: 41878 features -2023-02-18 17:49:43,706 - INFO - Creating relations(parent) index -2023-02-18 17:49:43,735 - INFO - Creating relations(child) index -2023-02-18 17:49:43,761 - INFO - Creating features(featuretype) index -2023-02-18 17:49:43,773 - INFO - Creating features (seqid, start, end) index -2023-02-18 17:49:43,793 - INFO - Creating features (seqid, start, end, strand) index -2023-02-18 17:49:43,813 - INFO - Running ANALYZE features - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/Saccharomyces_cerevisiae.R64-1-1.108.db. - -2023-02-18 17:49:44 -Loading sqlite3 db by gffutils from /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/Saccharomyces_cerevisiae.R64-1-$ -.108.db to memory... -Done. - -2023-02-18 17:49:44 -Getting GENE DATABASE metrics... -Done. - -Sets maximum intron size equal 2583. Default is 1500000 bp. - - -2023-02-18 17:51:09 -Sorting exons attributes... - Sorted in I. - Sorted in II. - Sorted in III. - Sorted in IV. - Sorted in V. - Sorted in VI. - Sorted in VII. - Sorted in VIII. - Sorted in IX. - Sorted in X. - Sorted in XI. - Sorted in XII. - Sorted in XIII. - Sorted in XIV. - Sorted in XV. - Sorted in XVI. - Sorted in Mito. - Sorted in I. - Sorted in II. - Sorted in III. - Sorted in IV. - Sorted in V. - Sorted in VI. - Sorted in VII. - Sorted in VIII. - Sorted in IX. - Sorted in X. - Sorted in XI. - Sorted in XII. - Sorted in XIII. - Sorted in XIV. - Sorted in XV. - Sorted in XVI. - Sorted in Mito. - Sorted in I. - Sorted in II. - Sorted in III. - Sorted in IV. - Sorted in V. - Sorted in VI. - Sorted in VII. - Sorted in VIII. - Sorted in IX. - Sorted in X. - Sorted in XI. - Sorted in XII. - Sorted in XIII. - Sorted in XIV. - Sorted in XV. - Sorted in XVI. - Sorted in Mito. -Done. - -2023-02-18 17:51:12 -Running STAR... - -2023-02-18 17:51:12 - STAR --runMode genomeGenerate --runThreadN 32 --genomeDir /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/tmp/star_out/tmp_dir/genome_dir --genomeFastaFiles /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --genomeSAindexNbases 10.0 1>> /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/logs/STAR.out.log 2>> /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/logs/STAR.err.log - logs can be found in /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/logs/STAR.out.log and /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/logs/STAR.err.log. - -2023-02-18 17:51:16 - STAR --runThreadN 32 --genomeDir /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/tmp/star_out/genome_dir --readFilesIn /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/fastqs/merged_Q_IP_UTK_R1.fq.gz /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/fastqs/merged_Q_IP_UTK_R3.fq.gz --outFileNamePrefix /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/tmp/star_out/ --outSAMtype SAM --limitBAMsortRAM 1000706316 --readFilesCommand zcat 1>> /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/logs/STAR.out.log 2>> /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/logs/STAR.err.log - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/tmp/star_out. - logs can be found in /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/logs/STAR.out.log and /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N/logs/STAR.err.log. - -2023-02-18 17:55:33 -Getting database coverage by reads... - -[Errno 116] Stale file handle -Traceback (most recent call last): - File "/home/kalavatt/miniconda3/envs/rnaquast_env/bin/rnaQUAST.py", line 348, in - return_code = main_utils() - File "/home/kalavatt/miniconda3/envs/rnaquast_env/bin/rnaQUAST.py", line 171, in main_utils - genome_len, tmp_dir, args.threads, WELL_FULLY_COVERAGE_THRESHOLDS, logger, log_dir) - File "/home/kalavatt/miniconda3/envs/rnaquast_env/share/rnaquast-2.0.1-0/metrics/ReadsCoverage.py", line 52, in __init__ - WELL_FULLY_COVERAGE_THRESHOLDS, logger, log_dir) - File "/home/kalavatt/miniconda3/envs/rnaquast_env/share/rnaquast-2.0.1-0/metrics/ReadsCoverage.py", line 71, in get_database_coverage_by_reads - for line in in_handle: -OSError: [Errno 116] Stale file handle - -ERROR! Exception caught! - -In case you have troubles running rnaQUAST, you can write to rnaquast_support@ablab.spbau.ru -Please provide us with rnaQUAST.log file from the output directory. -``` -
-
-
- - -## Install up-to-date rnaQUAST in its own environment (2023-0220) - -### Code -
-Code: Install up-to-date rnaQUAST in its own environment (2023-0220) - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -grabnode # 1, etc. - -mamba create \ - -n rnaquast_curr_env \ - -c bioconda \ - rnaquast=2.2.1=h9ee0642_0 - -exit - -rm -r outfiles_rnaQUAST-test_Trinity-GG_Q-N/ -``` -
-
- - -### Printed -
-Printed: Install up-to-date rnaQUAST in its own environment (2023-0220) - -```txt -❯ mamba create \ -> -n rnaquast_curr_env \ -> -c bioconda \ -> rnaquast=2.2.1=h9ee0642_0 - - __ __ __ __ - / \ / \ / \ / \ - / \/ \/ \/ \ -███████████████/ /██/ /██/ /██/ /████████████████████████ - / / \ / \ / \ / \ \____ - / / \_/ \_/ \_/ \ o \__, - / _/ \_____/ ` - |/ - ███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗ - ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗ - ██╔████╔██║███████║██╔████╔██║██████╔╝███████║ - ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║ - ██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║ - ╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝ - - mamba (1.3.1) supported by @QuantStack - - GitHub: https://github.com/mamba-org/mamba - Twitter: https://twitter.com/QuantStack - -█████████████████████████████████████████████████████████████ - - -Looking for: ['rnaquast==2.2.1=h9ee0642_0'] - -bioconda/linux-64 No change -bioconda/noarch No change -pkgs/r/noarch No change -pkgs/main/noarch No change -pkgs/r/linux-64 No change -pkgs/main/linux-64 5.2MB @ 4.8MB/s 1.3s -conda-forge/noarch 11.3MB @ 4.4MB/s 2.8s -conda-forge/linux-64 29.8MB @ 5.1MB/s 6.7s -Transaction - - Prefix: /home/kalavatt/miniconda3/envs/rnaquast_curr_env - - Updating specs: - - - rnaquast==2.2.1=h9ee0642_0 - - - Package Version Build Channel Size -────────────────────────────────────────────────────────────────────────────────────────────────────────── - Install: -────────────────────────────────────────────────────────────────────────────────────────────────────────── - - + _libgcc_mutex 0.1 conda_forge conda-forge/linux-64 Cached - + _openmp_mutex 4.5 2_gnu conda-forge/linux-64 Cached - + _r-mutex 1.0.1 anacondar_1 conda-forge/noarch Cached - + alsa-lib 1.2.8 h166bdaf_0 conda-forge/linux-64 592kB - + argcomplete 2.0.0 pyhd8ed1ab_0 conda-forge/noarch 35kB - + argh 0.26.2 pyh9f0ad1d_1002 conda-forge/noarch 26kB - + augustus 3.5.0 pl5321hf46c7bb_1 bioconda/linux-64 33MB - + bamtools 2.5.1 hd03093a_10 bioconda/linux-64 1MB - + bbmap 39.01 h5c4e2a8_0 bioconda/linux-64 9MB - + binutils_impl_linux-64 2.40 hf600244_0 conda-forge/linux-64 Cached - + biopython 1.79 py37h540881e_2 conda-forge/linux-64 3MB - + blast 2.13.0 hf3cf87c_0 bioconda/linux-64 24MB - + blat 35 1 bioconda/linux-64 Cached - + boost-cpp 1.74.0 h75c5d50_8 conda-forge/linux-64 17MB - + bottleneck 1.3.5 py37hda87dfa_0 conda-forge/linux-64 129kB - + brotli 1.0.9 h166bdaf_8 conda-forge/linux-64 19kB - + brotli-bin 1.0.9 h166bdaf_8 conda-forge/linux-64 20kB - + busco 5.4.5 pyhdfd78af_0 bioconda/noarch 343kB - + bwidget 1.9.14 ha770c72_1 conda-forge/linux-64 Cached - + bzip2 1.0.8 h7f98852_4 conda-forge/linux-64 Cached - + c-ares 1.18.1 h7f98852_0 conda-forge/linux-64 Cached - + ca-certificates 2022.12.7 ha878542_0 conda-forge/linux-64 Cached - + cairo 1.16.0 ha61ee94_1014 conda-forge/linux-64 Cached - + cdbtools 0.99 hd03093a_7 bioconda/linux-64 72kB - + certifi 2022.12.7 pyhd8ed1ab_0 conda-forge/noarch Cached - + curl 7.87.0 h6312ad2_0 conda-forge/linux-64 88kB - + cycler 0.11.0 pyhd8ed1ab_0 conda-forge/noarch 10kB - + dendropy 4.5.2 pyh3252c3a_0 bioconda/noarch 315kB - + diamond 2.0.15 hb97b32f_1 bioconda/linux-64 3MB - + emboss 6.6.0 haa49230_5 bioconda/linux-64 98MB - + entrez-direct 16.2 he881be0_1 bioconda/linux-64 8MB - + expat 2.5.0 h27087fc_0 conda-forge/linux-64 Cached - + font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge/noarch Cached - + font-ttf-inconsolata 3.000 h77eed37_0 conda-forge/noarch Cached - + font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge/noarch Cached - + font-ttf-ubuntu 0.83 hab24e00_0 conda-forge/noarch Cached - + fontconfig 2.14.2 h14ed4e7_0 conda-forge/linux-64 Cached - + fonts-conda-ecosystem 1 0 conda-forge/noarch Cached - + fonts-conda-forge 1 0 conda-forge/noarch Cached - + fonttools 4.38.0 py37h540881e_0 conda-forge/linux-64 2MB - + freetype 2.12.1 hca18f0e_1 conda-forge/linux-64 Cached - + fribidi 1.0.10 h36c2ea0_0 conda-forge/linux-64 Cached - + gawk 5.1.0 h7f98852_0 conda-forge/linux-64 1MB - + gcc_impl_linux-64 12.2.0 hcc96c02_19 conda-forge/linux-64 Cached - + gettext 0.21.1 h27087fc_0 conda-forge/linux-64 Cached - + gffutils 0.11.1 pyh7cba7a3_0 bioconda/noarch Cached - + gfortran_impl_linux-64 12.2.0 h55be85b_19 conda-forge/linux-64 Cached - + giflib 5.2.1 h36c2ea0_2 conda-forge/linux-64 79kB - + gmap 2017.11.15 h2f06484_4 bioconda/linux-64 41MB - + gmp 6.2.1 h58526e2_0 conda-forge/linux-64 826kB - + graphite2 1.3.13 h58526e2_1001 conda-forge/linux-64 Cached - + gsl 2.7 he838d99_0 conda-forge/linux-64 Cached - + gxx_impl_linux-64 12.2.0 hcc96c02_19 conda-forge/linux-64 Cached - + harfbuzz 6.0.0 h8e241bc_0 conda-forge/linux-64 Cached - + hmmer 3.1b2 3 bioconda/linux-64 6MB - + htslib 1.16 h6bc39ce_0 bioconda/linux-64 2MB - + icu 70.1 h27087fc_0 conda-forge/linux-64 Cached - + importlib-metadata 4.11.4 py37h89c1867_0 conda-forge/linux-64 34kB - + importlib_metadata 4.11.4 hd8ed1ab_0 conda-forge/noarch 4kB - + joblib 1.2.0 pyhd8ed1ab_0 conda-forge/noarch 210kB - + jpeg 9e h0b41bf4_3 conda-forge/linux-64 Cached - + kernel-headers_linux-64 2.6.32 he073ed8_15 conda-forge/noarch Cached - + keyutils 1.6.1 h166bdaf_0 conda-forge/linux-64 Cached - + kiwisolver 1.4.4 py37h7cecad7_0 conda-forge/linux-64 75kB - + krb5 1.20.1 hf9c8cef_0 conda-forge/linux-64 1MB - + lcms2 2.14 h6ed2654_0 conda-forge/linux-64 262kB - + ld_impl_linux-64 2.40 h41732ed_0 conda-forge/linux-64 Cached - + lerc 4.0.0 h27087fc_0 conda-forge/linux-64 Cached - + libblas 3.9.0 16_linux64_openblas conda-forge/linux-64 Cached - + libbrotlicommon 1.0.9 h166bdaf_8 conda-forge/linux-64 67kB - + libbrotlidec 1.0.9 h166bdaf_8 conda-forge/linux-64 34kB - + libbrotlienc 1.0.9 h166bdaf_8 conda-forge/linux-64 295kB - + libcblas 3.9.0 16_linux64_openblas conda-forge/linux-64 Cached - + libcups 2.3.3 h36d4200_3 conda-forge/linux-64 5MB - + libcurl 7.87.0 h6312ad2_0 conda-forge/linux-64 347kB - + libdeflate 1.13 h166bdaf_0 conda-forge/linux-64 80kB - + libedit 3.1.20191231 he28a2e2_2 conda-forge/linux-64 Cached - + libev 4.33 h516909a_1 conda-forge/linux-64 Cached - + libffi 3.4.2 h7f98852_5 conda-forge/linux-64 Cached - + libgcc-devel_linux-64 12.2.0 h3b97bd3_19 conda-forge/linux-64 Cached - + libgcc-ng 12.2.0 h65d4601_19 conda-forge/linux-64 Cached - + libgd 2.3.3 h18fbbfe_3 conda-forge/linux-64 272kB - + libgfortran-ng 12.2.0 h69a702a_19 conda-forge/linux-64 Cached - + libgfortran5 12.2.0 h337968e_19 conda-forge/linux-64 Cached - + libglib 2.74.1 h606061b_1 conda-forge/linux-64 Cached - + libgomp 12.2.0 h65d4601_19 conda-forge/linux-64 Cached - + libhwloc 2.8.0 h32351e8_1 conda-forge/linux-64 3MB - + libiconv 1.17 h166bdaf_0 conda-forge/linux-64 Cached - + libidn2 2.3.4 h166bdaf_0 conda-forge/linux-64 160kB - + liblapack 3.9.0 16_linux64_openblas conda-forge/linux-64 Cached - + libnghttp2 1.51.0 hdcd2b5c_0 conda-forge/linux-64 Cached - + libnsl 2.0.0 h7f98852_0 conda-forge/linux-64 Cached - + libopenblas 0.3.21 pthreads_h78a6416_3 conda-forge/linux-64 Cached - + libpng 1.6.39 h753d276_0 conda-forge/linux-64 Cached - + libsanitizer 12.2.0 h46fd767_19 conda-forge/linux-64 Cached - + libsqlite 3.40.0 h753d276_0 conda-forge/linux-64 Cached - + libssh2 1.10.0 haa6b8db_3 conda-forge/linux-64 Cached - + libstdcxx-devel_linux-64 12.2.0 h3b97bd3_19 conda-forge/linux-64 Cached - + libstdcxx-ng 12.2.0 h46fd767_19 conda-forge/linux-64 Cached - + libtiff 4.4.0 h0e0dad5_3 conda-forge/linux-64 658kB - + libunistring 0.9.10 h7f98852_0 conda-forge/linux-64 1MB - + libuuid 2.32.1 h7f98852_1000 conda-forge/linux-64 Cached - + libwebp 1.2.4 h522a892_0 conda-forge/linux-64 90kB - + libwebp-base 1.2.4 h166bdaf_0 conda-forge/linux-64 Cached - + libxcb 1.13 h7f98852_1004 conda-forge/linux-64 Cached - + libxml2 2.10.3 h7463322_0 conda-forge/linux-64 Cached - + libzlib 1.2.13 h166bdaf_4 conda-forge/linux-64 Cached - + lp_solve 5.5.2.5 h14c3975_1001 conda-forge/linux-64 429kB - + make 4.3 hd18ef5c_1 conda-forge/linux-64 Cached - + matplotlib-base 3.5.3 py37hf395dca_2 conda-forge/linux-64 8MB - + metaeuk 6.a5d39d9 pl5321hf1761c0_1 bioconda/linux-64 4MB - + metis 5.1.0 h58526e2_1006 conda-forge/linux-64 4MB - + mpfr 4.1.0 h9202a9a_1 conda-forge/linux-64 3MB - + munkres 1.0.7 py_1 bioconda/noarch 10kB - + mysql-connector-c 6.1.11 h6eb9d5d_1007 conda-forge/linux-64 3MB - + ncurses 6.3 h27087fc_1 conda-forge/linux-64 Cached - + nomkl 1.0 h5ca1d4c_0 conda-forge/noarch 4kB - + numexpr 2.8.3 py37h85a3170_100 conda-forge/linux-64 137kB - + numpy 1.21.6 py37h976b520_0 conda-forge/linux-64 6MB - + openjdk 17.0.3 h58dac75_5 conda-forge/linux-64 169MB - + openjpeg 2.5.0 h7d73246_1 conda-forge/linux-64 546kB - + openssl 1.1.1t h0b41bf4_0 conda-forge/linux-64 Cached - + packaging 23.0 pyhd8ed1ab_0 conda-forge/noarch 41kB - + pandas 1.3.5 py37h8c16a72_0 pkgs/main/linux-64 10MB - + pango 1.50.13 hd33c08f_0 conda-forge/linux-64 437kB - + pbzip2 1.1.13 0 conda-forge/linux-64 Cached - + pcre 8.45 h9c3ff4c_0 conda-forge/linux-64 259kB - + pcre2 10.40 hc3806b6_0 conda-forge/linux-64 Cached - + perl 5.32.1 2_h7f98852_perl5 conda-forge/linux-64 Cached - + perl-apache-test 1.43 pl5321hdfd78af_0 bioconda/noarch 122kB - + perl-app-cpanminus 1.7046 pl5321hd8ed1ab_0 conda-forge/noarch 245kB - + perl-archive-tar 2.40 pl5321hdfd78af_0 bioconda/noarch 34kB - + perl-base 2.23 pl5321hdfd78af_2 bioconda/noarch 12kB - + perl-carp 1.38 pl5321hdfd78af_4 bioconda/noarch 17kB - + perl-class-load 0.25 pl5321hdfd78af_1 bioconda/noarch 14kB - + perl-class-load-xs 0.10 pl5321h9f5acd7_6 bioconda/linux-64 14kB - + perl-class-method-modifiers 2.13 pl5321hdfd78af_0 bioconda/noarch 16kB - + perl-common-sense 3.75 pl5321hdfd78af_0 bioconda/noarch 14kB - + perl-compress-raw-bzip2 2.201 pl5321h87f3376_1 bioconda/linux-64 49kB - + perl-compress-raw-zlib 2.105 pl5321h87f3376_0 bioconda/linux-64 77kB - + perl-constant 1.33 pl5321hdfd78af_2 bioconda/noarch 12kB - + perl-cpan-meta 2.150010 pl5321hdfd78af_1 bioconda/noarch 6kB - + perl-cpan-meta-check 0.014 pl5321hdfd78af_1 bioconda/noarch 10kB - + perl-cpan-meta-requirements 2.140 pl5321hdfd78af_1 bioconda/noarch 13kB - + perl-cpan-meta-yaml 0.018 pl5321hdfd78af_1 bioconda/noarch 14kB - + perl-data-dumper 2.183 pl5321hec16e2b_1 bioconda/linux-64 38kB - + perl-data-optlist 0.113 pl5321ha770c72_0 conda-forge/linux-64 19kB - + perl-dbi 1.643 pl5321hec16e2b_1 bioconda/linux-64 619kB - + perl-devel-globaldestruction 0.14 pl5321hdfd78af_1 bioconda/noarch 10kB - + perl-devel-overloadinfo 0.007 pl5321hdfd78af_0 bioconda/noarch 11kB - + perl-devel-stacktrace 2.04 pl5321hdfd78af_1 bioconda/noarch 17kB - + perl-dist-checkconflicts 0.11 pl5321hdfd78af_3 bioconda/noarch 12kB - + perl-encode 3.19 pl5321hec16e2b_1 bioconda/linux-64 2MB - + perl-eval-closure 0.14 pl5321h9f5acd7_6 bioconda/linux-64 13kB - + perl-exporter 5.72 pl5321hdfd78af_2 bioconda/noarch 16kB - + perl-exporter-tiny 1.002002 pl5321hdfd78af_0 bioconda/noarch 25kB - + perl-extutils-cbuilder 0.280230 pl5321hdfd78af_2 bioconda/noarch 23kB - + perl-extutils-makemaker 7.66 pl5321hd8ed1ab_0 conda-forge/noarch 157kB - + perl-extutils-manifest 1.73 pl5321hdfd78af_0 bioconda/noarch 15kB - + perl-extutils-parsexs 3.44 pl5321hdfd78af_0 bioconda/noarch 42kB - + perl-file-path 2.18 pl5321hd8ed1ab_0 conda-forge/noarch 22kB - + perl-file-temp 0.2304 pl5321hd8ed1ab_0 conda-forge/noarch 32kB - + perl-file-which 1.24 pl5321hd8ed1ab_0 conda-forge/noarch 17kB - + perl-getopt-long 2.54 pl5321hdfd78af_0 bioconda/noarch 32kB - + perl-io-compress 2.201 pl5321h87f3376_0 bioconda/linux-64 86kB - + perl-io-zlib 1.14 pl5321hdfd78af_0 bioconda/noarch 12kB - + perl-ipc-cmd 1.04 pl5321hdfd78af_0 bioconda/noarch 25kB - + perl-json 4.10 pl5321hdfd78af_0 bioconda/noarch 57kB - + perl-json-pp 4.11 pl5321hdfd78af_0 bioconda/noarch 34kB - + perl-json-xs 2.34 pl5321h9f5acd7_5 bioconda/linux-64 65kB - + perl-list-moreutils 0.430 pl5321hdfd78af_0 bioconda/noarch 32kB - + perl-list-moreutils-xs 0.430 pl5321hec16e2b_1 bioconda/linux-64 50kB - + perl-locale-maketext-simple 0.21 pl5321hdfd78af_3 bioconda/noarch 11kB - + perl-module-build 0.4231 pl5321hdfd78af_0 bioconda/noarch 131kB - + perl-module-corelist 5.20220620 pl5321hdfd78af_0 bioconda/noarch 67kB - + perl-module-implementation 0.09 pl5321hdfd78af_3 bioconda/noarch 12kB - + perl-module-load 0.34 pl5321hdfd78af_0 bioconda/noarch 6kB - + perl-module-load-conditional 0.68 pl5321hdfd78af_3 bioconda/noarch 12kB - + perl-module-metadata 1.000037 pl5321hdfd78af_0 bioconda/noarch 18kB - + perl-module-runtime 0.016 pl5321hdfd78af_2 bioconda/noarch 17kB - + perl-module-runtime-conflicts 0.003 pl5321hdfd78af_1 bioconda/noarch 9kB - + perl-moo 2.005004 pl5321hdfd78af_0 bioconda/noarch 42kB - + perl-moose 2.2202 pl5321hec16e2b_0 bioconda/linux-64 457kB - + perl-mro-compat 0.15 pl5321hdfd78af_0 bioconda/noarch 13kB - + perl-package-deprecationmanager 0.17 pl5321hdfd78af_1 bioconda/noarch 13kB - + perl-package-stash 0.40 pl5321h87f3376_1 bioconda/linux-64 124kB - + perl-package-stash-xs 0.30 pl5321h0b41bf4_0 conda-forge/linux-64 29kB - + perl-parallel-forkmanager 2.02 pl5321hdfd78af_1 bioconda/noarch 23kB - + perl-params-check 0.38 pl5321hdfd78af_2 bioconda/noarch 6kB - + perl-params-util 1.102 pl5321h9f5acd7_1 bioconda/linux-64 24kB - + perl-parent 0.236 pl5321hdfd78af_2 bioconda/noarch 8kB - + perl-pathtools 3.75 pl5321hec16e2b_3 bioconda/linux-64 43kB - + perl-perl-ostype 1.010 pl5321hdfd78af_2 bioconda/noarch 9kB - + perl-role-tiny 2.002004 pl5321hdfd78af_0 bioconda/noarch 17kB - + perl-scalar-list-utils 1.62 pl5321hec16e2b_1 bioconda/linux-64 45kB - + perl-storable 3.15 pl5321hec16e2b_3 bioconda/linux-64 65kB - + perl-sub-exporter 0.988 pl5321hdfd78af_0 bioconda/noarch 38kB - + perl-sub-exporter-progressive 0.001013 pl5321hdfd78af_1 bioconda/noarch 10kB - + perl-sub-identify 0.14 pl5321hec16e2b_2 bioconda/linux-64 14kB - + perl-sub-install 0.928 pl5321hdfd78af_3 bioconda/noarch 12kB - + perl-sub-name 0.21 pl5321hec16e2b_3 bioconda/linux-64 15kB - + perl-sub-quote 2.006006 pl5321hdfd78af_0 bioconda/noarch 20kB - + perl-test-fatal 0.016 pl5321hdfd78af_0 bioconda/noarch 13kB - + perl-text-abbrev 1.02 pl5321hdfd78af_1 bioconda/noarch 8kB - + perl-text-parsewords 3.31 pl5321hdfd78af_0 bioconda/noarch 10kB - + perl-try-tiny 0.31 pl5321hdfd78af_1 bioconda/noarch 20kB - + perl-types-serialiser 1.01 pl5321hdfd78af_0 bioconda/noarch 13kB - + perl-version 0.9924 pl5321hec16e2b_2 bioconda/linux-64 25kB - + perl-xsloader 0.24 pl5321hd8ed1ab_0 conda-forge/noarch 14kB - + perl-yaml 1.30 pl5321hdfd78af_0 bioconda/noarch 44kB - + pillow 9.2.0 py37h850a105_2 conda-forge/linux-64 47MB - + pip 23.0.1 pyhd8ed1ab_0 conda-forge/noarch Cached - + pixman 0.40.0 h36c2ea0_0 conda-forge/linux-64 Cached - + prodigal 2.6.3 hec16e2b_4 bioconda/linux-64 795kB - + pthread-stubs 0.4 h36c2ea0_1001 conda-forge/linux-64 Cached - + pyfaidx 0.7.1 pyh5e36f6f_0 bioconda/noarch 33kB - + pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge/noarch 81kB - + pysam 0.20.0 py37hee149a5_0 bioconda/linux-64 3MB - + python 3.7.12 hb7a2778_100_cpython conda-forge/linux-64 60MB - + python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge/noarch 246kB - + python_abi 3.7 3_cp37m conda-forge/linux-64 6kB - + pytz 2022.7.1 pyhd8ed1ab_0 conda-forge/noarch 186kB - + pyvcf3 1.0.3 pyhdfd78af_0 bioconda/noarch 980kB - + r-base 4.2.2 h6b4767f_2 conda-forge/linux-64 25MB - + r-cli 3.6.0 r42h38f115c_0 conda-forge/linux-64 Cached - + r-colorspace 2.1_0 r42h133d619_0 conda-forge/linux-64 Cached - + r-crayon 1.5.2 r42hc72bb7e_1 conda-forge/noarch Cached - + r-ellipsis 0.3.2 r42h06615bd_1 conda-forge/linux-64 Cached - + r-fansi 1.0.4 r42h133d619_0 conda-forge/linux-64 Cached - + r-farver 2.1.1 r42h7525677_1 conda-forge/linux-64 Cached - + r-ggplot2 3.4.1 r42hc72bb7e_0 conda-forge/noarch Cached - + r-glue 1.6.2 r42h06615bd_1 conda-forge/linux-64 Cached - + r-gtable 0.3.1 r42hc72bb7e_1 conda-forge/noarch Cached - + r-isoband 0.2.7 r42h38f115c_1 conda-forge/linux-64 Cached - + r-labeling 0.4.2 r42hc72bb7e_2 conda-forge/noarch Cached - + r-lattice 0.20_45 r42h06615bd_1 conda-forge/linux-64 Cached - + r-lifecycle 1.0.3 r42hc72bb7e_1 conda-forge/noarch Cached - + r-magrittr 2.0.3 r42h06615bd_1 conda-forge/linux-64 Cached - + r-mass 7.3_58.2 r42h133d619_0 conda-forge/linux-64 Cached - + r-matrix 1.5_3 r42h5f7b363_0 conda-forge/linux-64 Cached - + r-mgcv 1.8_41 r42h5f7b363_0 conda-forge/linux-64 Cached - + r-munsell 0.5.0 r42hc72bb7e_1005 conda-forge/noarch Cached - + r-nlme 3.1_162 r42hac0b197_0 conda-forge/linux-64 Cached - + r-pillar 1.8.1 r42hc72bb7e_1 conda-forge/noarch Cached - + r-pkgconfig 2.0.3 r42hc72bb7e_2 conda-forge/noarch Cached - + r-r6 2.5.1 r42hc72bb7e_1 conda-forge/noarch Cached - + r-rcolorbrewer 1.1_3 r42h785f33e_1 conda-forge/noarch Cached - + r-rlang 1.0.6 r42h7525677_1 conda-forge/linux-64 Cached - + r-scales 1.2.1 r42hc72bb7e_1 conda-forge/noarch Cached - + r-tibble 3.1.8 r42h06615bd_1 conda-forge/linux-64 Cached - + r-utf8 1.2.3 r42h133d619_0 conda-forge/linux-64 Cached - + r-vctrs 0.5.2 r42h38f115c_0 conda-forge/linux-64 Cached - + r-viridislite 0.4.1 r42hc72bb7e_1 conda-forge/noarch Cached - + r-withr 2.5.0 r42hc72bb7e_1 conda-forge/noarch Cached - + readline 8.1.2 h0f457ee_0 conda-forge/linux-64 Cached - + rnaquast 2.2.1 h9ee0642_0 bioconda/linux-64 5MB - + samtools 1.16.1 h6899075_1 bioconda/linux-64 421kB - + sed 4.8 he412f7d_0 conda-forge/linux-64 Cached - + sepp 4.5.1 py37he4bd417_1 bioconda/linux-64 7MB - + setuptools 67.3.2 pyhd8ed1ab_0 conda-forge/noarch Cached - + simplejson 3.17.6 py37h540881e_1 conda-forge/linux-64 106kB - + six 1.16.0 pyh6c4a22f_0 conda-forge/noarch 14kB - + sqlite 3.40.0 h4ff8645_0 conda-forge/linux-64 820kB - + star 2.7.10b h9ee0642_0 bioconda/linux-64 Cached - + suitesparse 5.10.1 h9e50725_1 conda-forge/linux-64 3MB - + sysroot_linux-64 2.12 he073ed8_15 conda-forge/noarch Cached - + tar 1.34 hb2e2bae_1 conda-forge/linux-64 915kB - + tbb 2021.7.0 h924138e_1 conda-forge/linux-64 2MB - + tk 8.6.12 h27826a3_0 conda-forge/linux-64 Cached - + tktable 2.10 hb7b940f_3 conda-forge/linux-64 Cached - + typing-extensions 4.4.0 hd8ed1ab_0 conda-forge/noarch 9kB - + typing_extensions 4.4.0 pyha770c72_0 conda-forge/noarch 30kB - + ucsc-fatotwobit 377 ha8a8165_5 bioconda/linux-64 138kB - + ucsc-pslsort 377 ha8a8165_4 bioconda/linux-64 140kB - + ucsc-twobitinfo 377 ha8a8165_3 bioconda/linux-64 154kB - + unicodedata2 14.0.0 py37h540881e_1 conda-forge/linux-64 508kB - + wget 1.20.3 ha56f1ee_1 conda-forge/linux-64 824kB - + wheel 0.38.4 pyhd8ed1ab_0 conda-forge/noarch Cached - + xorg-fixesproto 5.0 h7f98852_1002 conda-forge/linux-64 9kB - + xorg-inputproto 2.3.2 h7f98852_1002 conda-forge/linux-64 20kB - + xorg-kbproto 1.0.7 h7f98852_1002 conda-forge/linux-64 Cached - + xorg-libice 1.0.10 h7f98852_0 conda-forge/linux-64 Cached - + xorg-libsm 1.2.3 hd9c2040_1000 conda-forge/linux-64 Cached - + xorg-libx11 1.7.2 h7f98852_0 conda-forge/linux-64 Cached - + xorg-libxau 1.0.9 h7f98852_0 conda-forge/linux-64 Cached - + xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge/linux-64 Cached - + xorg-libxext 1.3.4 h7f98852_1 conda-forge/linux-64 Cached - + xorg-libxfixes 5.0.3 h7f98852_1004 conda-forge/linux-64 18kB - + xorg-libxi 1.7.10 h7f98852_0 conda-forge/linux-64 47kB - + xorg-libxrender 0.9.10 h7f98852_1003 conda-forge/linux-64 Cached - + xorg-libxt 1.2.1 h7f98852_2 conda-forge/linux-64 Cached - + xorg-libxtst 1.2.3 h7f98852_1002 conda-forge/linux-64 32kB - + xorg-recordproto 1.14.2 h7f98852_1002 conda-forge/linux-64 8kB - + xorg-renderproto 0.11.1 h7f98852_1002 conda-forge/linux-64 Cached - + xorg-xextproto 7.3.0 h7f98852_1002 conda-forge/linux-64 Cached - + xorg-xproto 7.0.31 h7f98852_1007 conda-forge/linux-64 Cached - + xz 5.2.6 h166bdaf_0 conda-forge/linux-64 Cached - + zipp 3.14.0 pyhd8ed1ab_0 conda-forge/noarch 17kB - + zlib 1.2.13 h166bdaf_4 conda-forge/linux-64 Cached - + zstd 1.5.2 h3eb15da_6 conda-forge/linux-64 Cached - - Summary: - - Install: 300 packages - - Total download: 636MB - -────────────────────────────────────────────────────────────────────────────────────────────────────────── - - -Confirm changes: [Y/n] Y -xorg-inputproto 19.6kB @ 260.7kB/s 0.1s -python_abi 5.7kB @ 58.8kB/s 0.1s -libunistring 1.4MB @ 14.1MB/s 0.1s -xorg-recordproto 8.0kB @ 59.2kB/s 0.1s -xorg-fixesproto 9.1kB @ 66.0kB/s 0.1s -libbrotlidec 34.2kB @ 204.0kB/s 0.1s -alsa-lib 592.3kB @ 3.3MB/s 0.1s -metis 4.3MB @ 21.6MB/s 0.2s -libidn2 160.4kB @ 807.7kB/s 0.1s -libtiff 657.5kB @ 3.3MB/s 0.1s -xorg-libxfixes 18.1kB @ 75.3kB/s 0.1s -openjpeg 546.2kB @ 2.2MB/s 0.1s -libwebp 89.6kB @ 363.5kB/s 0.1s -tar 914.7kB @ 3.0MB/s 0.2s -curl 88.2kB @ 285.2kB/s 0.1s -xorg-libxtst 32.1kB @ 102.1kB/s 0.1s -suitesparse 2.5MB @ 6.6MB/s 0.1s -perl-sub-name 15.5kB @ 33.8kB/s 0.2s -perl-compress-raw-zlib 77.2kB @ 166.1kB/s 0.2s -cdbtools 71.7kB @ 153.4kB/s 0.1s -libcups 4.5MB @ 9.5MB/s 0.3s -samtools 420.8kB @ 818.5kB/s 0.1s -htslib 2.4MB @ 4.3MB/s 0.3s -perl-extutils-makemaker 157.2kB @ 272.8kB/s 0.2s -zipp 17.3kB @ 26.0kB/s 0.3s -perl-dbi 619.1kB @ 695.2kB/s 0.7s -packaging 40.7kB @ 42.4kB/s 0.3s -cycler 10.3kB @ 10.5kB/s 0.3s -joblib 210.0kB @ 213.0kB/s 0.3s -metaeuk 4.3MB @ 4.0MB/s 0.6s -perl-base 11.9kB @ 10.1kB/s 0.3s -perl-params-check 6.1kB @ 4.9kB/s 0.3s -perl-locale-maketext-simple 10.6kB @ 8.5kB/s 0.3s -perl-getopt-long 31.5kB @ 25.2kB/s 0.3s -perl-parent 7.9kB @ 6.3kB/s 0.2s -dendropy 315.3kB @ 216.5kB/s 0.2s -perl-module-corelist 67.5kB @ 44.1kB/s 0.3s -perl-text-parsewords 9.8kB @ 6.4kB/s 0.3s -pyvcf3 979.5kB @ 638.9kB/s 0.3s -munkres 10.2kB @ 6.6kB/s 0.3s -perl-test-fatal 13.1kB @ 8.4kB/s 0.1s -libgd 272.5kB @ 151.1kB/s 0.2s -perl-cpan-meta-requirements 13.5kB @ 7.4kB/s 0.3s -perl-module-runtime-conflicts 9.4kB @ 5.1kB/s 0.3s -perl-params-util 24.1kB @ 13.1kB/s 0.3s -pysam 2.8MB @ 1.5MB/s 0.4s -bottleneck 129.2kB @ 68.2kB/s 0.1s -perl-file-temp 31.5kB @ 16.6kB/s 0.0s -perl-package-stash-xs 28.6kB @ 15.0kB/s 0.1s -fonttools 2.0MB @ 1.1MB/s 0.1s -numexpr 137.0kB @ 61.1kB/s 0.4s -perl-module-metadata 17.7kB @ 7.9kB/s 0.4s -perl-cpan-meta 5.7kB @ 2.5kB/s 0.4s -perl-sub-exporter 38.4kB @ 17.1kB/s 0.4s -pyfaidx 32.6kB @ 14.5kB/s 0.4s -perl-extutils-parsexs 42.1kB @ 16.0kB/s 0.4s -perl-module-build 131.1kB @ 49.6kB/s 0.4s -giflib 79.3kB @ 25.8kB/s 0.6s -libdeflate 80.4kB @ 23.8kB/s 0.6s -libbrotlienc 295.2kB @ 81.0kB/s 0.6s -sepp 6.9MB @ 1.8MB/s 1.7s -rnaquast 5.1MB @ 1.3MB/s 1.3s -brotli-bin 20.1kB @ 5.1kB/s 0.4s -sqlite 820.2kB @ 192.8kB/s 0.3s -wget 823.6kB @ 192.8kB/s 0.5s -bbmap 9.4MB @ 2.2MB/s 2.2s -libhwloc 3.1MB @ 695.0kB/s 0.6s -prodigal 795.2kB @ 174.8kB/s 0.4s -perl-data-dumper 38.5kB @ 8.1kB/s 0.5s -perl-compress-raw-bzip2 48.8kB @ 9.8kB/s 0.5s -ucsc-pslsort 140.1kB @ 28.2kB/s 0.7s -hmmer 5.8MB @ 1.1MB/s 1.0s -nomkl 3.8kB @ 730.0 B/s 0.3s -perl-file-which 17.3kB @ 3.3kB/s 0.3s -argh 26.2kB @ 4.8kB/s 0.3s -pyparsing 81.3kB @ 14.9kB/s 0.3s -typing_extensions 30.0kB @ 5.4kB/s 0.3s -entrez-direct 7.8MB @ 1.4MB/s 0.9s -perl-mro-compat 12.6kB @ 2.2kB/s 0.4s -perl-devel-stacktrace 17.5kB @ 3.0kB/s 0.4s -perl-exporter-tiny 25.4kB @ 4.3kB/s 0.3s -perl-types-serialiser 13.1kB @ 2.2kB/s 0.3s -perl-list-moreutils 32.5kB @ 5.2kB/s 0.4s -perl-constant 12.5kB @ 2.0kB/s 0.4s -perl-devel-globaldestruction 9.7kB @ 1.6kB/s 0.4s -perl-json-xs 65.4kB @ 10.5kB/s 0.0s -unicodedata2 508.2kB @ 81.2kB/s 0.4s -perl-eval-closure 12.9kB @ 2.0kB/s 0.5s -importlib_metadata 3.9kB @ 563.0 B/s 0.4s -argcomplete 35.2kB @ 5.0kB/s 0.4s -perl-module-load-conditional 12.1kB @ 1.6kB/s 0.4s -perl-cpan-meta-check 10.0kB @ 1.4kB/s 0.4s -perl-devel-overloadinfo 11.1kB @ 1.4kB/s 0.4s -perl-class-load 14.2kB @ 1.8kB/s 0.4s -busco 343.1kB @ 42.6kB/s 0.3s -pcre 259.4kB @ 31.1kB/s 0.5s -krb5 1.3MB @ 154.4kB/s 0.5s -brotli 18.9kB @ 2.1kB/s 0.6s -r-base 25.1MB @ 2.4MB/s 4.2s -perl-sub-identify 14.2kB @ 1.3kB/s 0.4s -perl-scalar-list-utils 44.7kB @ 4.1kB/s 0.4s -ucsc-twobitinfo 153.6kB @ 13.8kB/s 0.4s -diamond 2.6MB @ 225.3kB/s 0.6s -six 14.3kB @ 1.2kB/s 0.4s -typing-extensions 8.6kB @ 710.0 B/s 0.4s -perl-sub-exporter-progressive 10.2kB @ 837.0 B/s 0.4s -perl-common-sense 13.6kB @ 1.1kB/s 0.4s -perl-io-zlib 12.2kB @ 966.0 B/s 0.4s -augustus 32.7MB @ 2.5MB/s 5.1s -perl-exporter 15.9kB @ 1.2kB/s 0.3s -perl-role-tiny 17.0kB @ 1.3kB/s 0.4s -perl-carp 17.1kB @ 1.3kB/s 0.4s -perl-pathtools 43.1kB @ 3.2kB/s 0.4s -perl-encode 2.2MB @ 164.1kB/s 0.7s -kiwisolver 74.5kB @ 5.5kB/s 0.4s -pango 437.2kB @ 31.8kB/s 0.4s -perl-archive-tar 34.1kB @ 2.4kB/s 0.3s -pillow 47.2MB @ 3.3MB/s 8.4s -perl-moose 457.3kB @ 30.6kB/s 0.5s -gawk 1.5MB @ 95.2kB/s 0.5s -lp_solve 428.6kB @ 27.7kB/s 0.5s -emboss 98.4MB @ 6.1MB/s 13.9s -mysql-connector-c 2.8MB @ 173.8kB/s 0.9s -tbb 1.6MB @ 93.6kB/s 0.5s -xorg-libxi 47.3kB @ 2.8kB/s 0.5s -perl-storable 64.8kB @ 3.8kB/s 0.3s -ucsc-fatotwobit 137.8kB @ 8.1kB/s 0.3s -perl-module-load 5.9kB @ 342.0 B/s 0.4s -perl-json-pp 33.9kB @ 2.0kB/s 0.4s -blast 23.5MB @ 1.4MB/s 3.3s -perl-sub-quote 20.4kB @ 1.2kB/s 0.4s -perl-class-method-modifiers 15.8kB @ 899.0 B/s 0.4s -python 60.1MB @ 3.4MB/s 8.8s -perl-module-implementation 11.6kB @ 642.0 B/s 0.4s -perl-cpan-meta-yaml 13.6kB @ 753.0 B/s 0.4s -perl-sub-install 12.3kB @ 685.0 B/s 0.5s -perl-extutils-cbuilder 22.9kB @ 1.2kB/s 0.4s -perl-package-stash 124.2kB @ 6.8kB/s 0.4s -perl-parallel-forkmanager 22.9kB @ 1.2kB/s 0.7s -matplotlib-base 7.7MB @ 398.2kB/s 1.7s -mpfr 2.7MB @ 140.3kB/s 0.9s -perl-list-moreutils-xs 50.3kB @ 2.6kB/s 0.4s -pytz 186.2kB @ 9.5kB/s 0.4s -python-dateutil 246.0kB @ 12.5kB/s 0.4s -perl-text-abbrev 7.5kB @ 374.0 B/s 0.3s -perl-perl-ostype 8.6kB @ 430.0 B/s 0.4s -perl-dist-checkconflicts 12.4kB @ 619.0 B/s 0.4s -perl-json 57.1kB @ 2.8kB/s 0.3s -perl-apache-test 121.9kB @ 6.0kB/s 0.3s -perl-ipc-cmd 25.2kB @ 1.2kB/s 0.3s -pandas 9.7MB @ 477.8kB/s 2.4s -lcms2 262.1kB @ 12.8kB/s 0.4s -bamtools 1.1MB @ 51.7kB/s 0.4s -libcurl 347.4kB @ 16.7kB/s 0.5s -importlib-metadata 33.6kB @ 1.6kB/s 0.4s -perl-file-path 22.4kB @ 1.1kB/s 0.7s -perl-package-deprecationmanager 13.0kB @ 604.0 B/s 0.7s -perl-try-tiny 19.5kB @ 903.0 B/s 1.2s -numpy 6.4MB @ 296.4kB/s 1.0s -perl-app-cpanminus 245.4kB @ 11.2kB/s 0.5s -perl-module-runtime 17.1kB @ 779.0 B/s 0.4s -perl-moo 41.8kB @ 1.9kB/s 0.4s -perl-version 25.1kB @ 1.1kB/s 0.8s -perl-xsloader 14.2kB @ 624.0 B/s 0.8s -libbrotlicommon 67.2kB @ 2.9kB/s 0.4s -gmp 825.8kB @ 35.1kB/s 1.0s -biopython 2.8MB @ 116.1kB/s 0.8s -perl-yaml 43.6kB @ 1.8kB/s 0.7s -perl-extutils-manifest 14.9kB @ 611.0 B/s 0.3s -perl-io-compress 85.8kB @ 3.5kB/s 0.3s -perl-class-load-xs 14.0kB @ 566.0 B/s 0.3s -perl-data-optlist 19.4kB @ 783.0 B/s 0.4s -boost-cpp 17.0MB @ 671.7kB/s 3.4s -gmap 41.0MB @ 1.5MB/s 5.8s -openjdk 168.8MB @ 5.8MB/s 15.9s - -Downloading and Extracting Packages - -Preparing transaction: done -Verifying transaction: done -Executing transaction: done - -To activate this environment, use - - $ mamba activate rnaquast_curr_env - -To deactivate an active environment, use - - $ mamba deactivate -``` -
-
-
- - -## Do ~~three~~n new trial runs (2023-0220-0221) -1. *with symlinked file, without `--busco_lineage` and `--gene_mark`: `trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta`* -2. *with symlinked file, with `--busco_lineage` and `--gene_mark`: `trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta`* -3. *without reads, without `--busco_lineage` and `--gene_mark`: `trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta`* -4. *without reads, with `--busco_lineage` and `--gene_mark`: `trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta`* -5. *without reads, without `--busco_lineage` and `--gene_mark`: the 285 Trinity GG Q_N datasets* -6. *with reads but in the form of a bam file, and without `--busco_lineage` and `--gene_mark` (can troubleshoot why they're not working—or at least why BUSCO is not working—later): `trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta`* - - -### Prepare for and perform run 1 - -#### Code -
-Code: Prepare for and perform run 1 - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -tmux ls -tmux new -s run_1 # then detach -tmux a -t run_1 - -grabnode # 16, defaults -source activate rnaquast_curr_env - -transcriptome && - { - cd "results/2023-0218/" \ - || echo "cd'ing failed; check on this..." - } - -n_GG="gg_mkc-16_mir-0.005_mg-1_gf-0.005" -f_GG="./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta" -p_ref="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -f_ref="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" -p_gtf="${HOME}/genomes/sacCer3/Ensembl/108/gtf" -f_gtf="Saccharomyces_cerevisiae.R64-1-1.108.gtf" -p_gmap="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -d_gmap="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap" -p_f_r1="fastqs/merged_Q_IP_UTK_R1.fq.gz" -p_f_r3="fastqs/merged_Q_IP_UTK_R3.fq.gz" - -d_out="outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-1" -if [[ ! -d "${d_out}" ]]; then - mkdir "${d_out}" -fi - -echo "${SLURM_CPUS_ON_NODE}" -echo "${n_GG}" -echo "${f_GG}" -echo "${p_ref}/${f_ref}" -echo "${p_gtf}/${f_gtf}" -echo "${p_gmap}/${d_gmap}" -echo "${p_f_r1}" -echo "${p_f_r3}" -echo "${d_out}" - -rnaQUAST.py \ - -t "${SLURM_CPUS_ON_NODE}" \ - --labels "${n_GG}" \ - --transcripts "${f_GG}" \ - --reference "${p_ref}/${f_ref}" \ - --gtf "${p_gtf}/${f_gtf}" \ - --gmap_index "${p_gmap}/${d_gmap}" \ - --strand_specific \ - --left_reads "${p_f_r1}" \ - --right_reads "${p_f_r3}" \ - --output_dir "${d_out}" \ - --disable_infer_genes \ - --disable_infer_transcripts -``` -
-
- - -#### Printed -
-Printed: Prepare for and perform run 1 - -```txt -❯ tmux ls -rnaquast: 1 windows (created Sat Feb 18 16:34:31 2023) [203x73] - - -❯ transcriptome && -> { -> cd "results/2023-0218/" \ -> || echo "cd'ing failed; check on this..." -> } -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218 - - -❯ if [[ ! -d "${d_out}" ]]; then -> mkdir "${d_out}" -> fi -mkdir: created directory 'outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-1' - - -❯ echo "${SLURM_CPUS_ON_NODE}" -16 - - -❯ echo "${n_GG}" -gg_mkc-16_mir-0.005_mg-1_gf-0.005 - - -❯ echo "${f_GG}" -./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta - - -❯ echo "${p_ref}/${f_ref}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - - -❯ echo "${p_gtf}/${f_gtf}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/gtf/Saccharomyces_cerevisiae.R64-1-1.108.gtf - - -❯ echo "${p_gmap}/${d_gmap}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap - - -❯ echo "${p_f_r1}" -fastqs/merged_Q_IP_UTK_R1.fq.gz - - -❯ echo "${p_f_r3}" -fastqs/merged_Q_IP_UTK_R3.fq.gz - - -# Job was hanging, so killed it on 2023-0221, ~7:15 a.m. -``` -
-
- - -### Prepare for and perform run 2 - -#### Code -
-Code: Prepare for and perform run 2 - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -tmux ls -tmux new -s run_2 # then detach -tmux a -t run_2 - -grabnode # 16, defaults -source activate rnaquast_curr_env - -transcriptome && - { - cd "results/2023-0218/" \ - || echo "cd'ing failed; check on this..." - } - -n_GG="gg_mkc-16_mir-0.005_mg-1_gf-0.005" -f_GG="./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta" -p_ref="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -f_ref="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" -p_gtf="${HOME}/genomes/sacCer3/Ensembl/108/gtf" -f_gtf="Saccharomyces_cerevisiae.R64-1-1.108.gtf" -p_gmap="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -d_gmap="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap" -p_f_r1="fastqs/merged_Q_IP_UTK_R1.fq.gz" -p_f_r3="fastqs/merged_Q_IP_UTK_R3.fq.gz" -p_f_busco="BUSCO/saccharomycetes_odb10" - -d_out="outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-2" -if [[ ! -d "${d_out}" ]]; then - mkdir "${d_out}" -fi - -echo "${SLURM_CPUS_ON_NODE}" -echo "${n_GG}" -echo "${f_GG}" -echo "${p_ref}/${f_ref}" -echo "${p_gtf}/${f_gtf}" -echo "${p_gmap}/${d_gmap}" -echo "${p_f_r1}" -echo "${p_f_r3}" -echo "${d_out}" -echo "${p_f_busco}" - -rnaQUAST.py \ - -t "${SLURM_CPUS_ON_NODE}" \ - --labels "${n_GG}" \ - --transcripts "${f_GG}" \ - --reference "${p_ref}/${f_ref}" \ - --gtf "${p_gtf}/${f_gtf}" \ - --gmap_index "${p_gmap}/${d_gmap}" \ - --strand_specific \ - --left_reads "${p_f_r1}" \ - --right_reads "${p_f_r3}" \ - --output_dir "${d_out}" \ - --busco "${p_f_busco}" \ - --gene_mark \ - --disable_infer_genes \ - --disable_infer_transcripts -``` -
-
- - -#### Printed -
-Printed: Prepare for and perform run 2 - -```txt -❯ tmux ls -rnaquast: 1 windows (created Sat Feb 18 16:34:31 2023) [203x73] -run_1: 1 windows (created Mon Feb 20 11:42:40 2023) [203x73] - - -❯ transcriptome && -> { -> cd "results/2023-0218/" \ -> || echo "cd'ing failed; check on this..." -> } -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218 - - -❯ echo "${SLURM_CPUS_ON_NODE}" -16 - - -❯ echo "${n_GG}" -gg_mkc-16_mir-0.005_mg-1_gf-0.005 - - -❯ echo "${f_GG}" -./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta - - -❯ echo "${p_ref}/${f_ref}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - - -❯ echo "${p_gtf}/${f_gtf}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/gtf/Saccharomyces_cerevisiae.R64-1-1.108.gtf - - -❯ echo "${p_gmap}/${d_gmap}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap - - -❯ echo "${p_f_r1}" -fastqs/merged_Q_IP_UTK_R1.fq.gz - - -❯ echo "${p_f_r3}" -fastqs/merged_Q_IP_UTK_R3.fq.gz - - -❯ echo "${d_out}" -outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-2 - - -❯ echo "${p_f_busco}" -BUSCO/saccharomycetes_odb10 - - -# Job was hanging, so killed it on 2023-0221, ~7:15 a.m. -``` -
-
- - -### Prepare for and perform run 3 - -#### Code -
-Code: Prepare for and perform run 3 - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -tmux ls -tmux new -s run_3 # then detach -tmux a -t run_3 - -grabnode # 16, defaults -source activate rnaquast_curr_env - -transcriptome && - { - cd "results/2023-0218/" \ - || echo "cd'ing failed; check on this..." - } - -n_GG="gg_mkc-16_mir-0.005_mg-1_gf-0.005" -f_GG="./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta" -p_ref="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -f_ref="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" -p_gtf="${HOME}/genomes/sacCer3/Ensembl/108/gtf" -f_gtf="Saccharomyces_cerevisiae.R64-1-1.108.gtf" -p_gmap="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -d_gmap="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap" - -d_out="outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3" -if [[ ! -d "${d_out}" ]]; then - mkdir "${d_out}" -fi - -echo "${SLURM_CPUS_ON_NODE}" -echo "${n_GG}" -echo "${f_GG}" -echo "${p_ref}/${f_ref}" -echo "${p_gtf}/${f_gtf}" -echo "${p_gmap}/${d_gmap}" -echo "${d_out}" - -rnaQUAST.py \ - -t "${SLURM_CPUS_ON_NODE}" \ - --labels "${n_GG}" \ - --transcripts "${f_GG}" \ - --reference "${p_ref}/${f_ref}" \ - --gtf "${p_gtf}/${f_gtf}" \ - --gmap_index "${p_gmap}/${d_gmap}" \ - --strand_specific \ - --output_dir "${d_out}" \ - --disable_infer_genes \ - --disable_infer_transcripts -``` -
-
- - -#### Printed -
-Printed: Prepare for and perform run 3 - -```txt -❯ transcriptome && -> { -> cd "results/2023-0218/" \ -> || echo "cd'ing failed; check on this..." -> } -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218 - - -❯ if [[ ! -d "${d_out}" ]]; then -> mkdir "${d_out}" -> fi -mkdir: created directory 'outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3' - - -❯ echo "${SLURM_CPUS_ON_NODE}" -16 - - -❯ echo "${n_GG}" -gg_mkc-16_mir-0.005_mg-1_gf-0.005 - - -❯ echo "${f_GG}" -./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta - - -❯ echo "${p_ref}/${f_ref}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - - -❯ echo "${p_gtf}/${f_gtf}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/gtf/Saccharomyces_cerevisiae.R64-1-1.108.gtf - - -❯ echo "${p_gmap}/${d_gmap}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap - - -❯ echo "${d_out}" -outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3 - - -❯ rnaQUAST.py \ -> -t "${SLURM_CPUS_ON_NODE}" \ -> --labels "${n_GG}" \ -> --transcripts "${f_GG}" \ -> --reference "${p_ref}/${f_ref}" \ -> --gtf "${p_gtf}/${f_gtf}" \ -> --gmap_index "${p_gmap}/${d_gmap}" \ -> --strand_specific \ -> --output_dir "${d_out}" \ -> --disable_infer_genes \ -> --disable_infer_transcripts -/home/kalavatt/miniconda3/envs/rnaquast_curr_env/share/rnaquast-2.2.1-0/rnaQUAST.py -t 16 --labels gg_mkc-16_mir-0.005_mg-1_gf-0.005 --transcripts ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.0 -05.Trinity-GG.fasta --reference /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --gtf /home/kalavatt/genomes/sacCer3/Ensembl/108/gtf/Saccharo -myces_cerevisiae.R64-1-1.108.gtf --gmap_index /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap --strand_specific --output_dir outfiles_rn -aQUAST-test_Trinity-GG_Q-N_2022-0220_run-3 --disable_infer_genes --disable_infer_transcripts - -rnaQUAST: 2.2.1 - -System information: - OS: Linux-4.15.0-192-generic-x86_64-with-debian-buster-sid (linux_64) - Python version: 3.7.12 - CPUs number: 36 - -External tools: - matplotlib: 3.5.3 - joblib: 1.2.0 - gffutils: 0.11.1 - blastn: 2.13.0+ - makeblastdb: 2.13.0+ - gmap: 2017-11-15 - -Started: 2023-02-20 13:26:51 - -Logging to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/logs/rnaQUAST.log - -2023-02-20 13:26:51 -Getting reference... -Done. -Using strand specific transcripts... - -2023-02-20 13:26:51 -Creating sqlite3 db by gffutils... -2023-02-20 13:26:55,231 - INFO - Committing changes: 41000 features -2023-02-20 13:26:55,307 - INFO - Populating features table and first-order relations: 41878 features -2023-02-20 13:26:55,314 - INFO - Creating relations(parent) index -2023-02-20 13:26:55,344 - INFO - Creating relations(child) index -2023-02-20 13:26:55,371 - INFO - Creating features(featuretype) index -2023-02-20 13:26:55,384 - INFO - Creating features (seqid, start, end) index -2023-02-20 13:26:55,404 - INFO - Creating features (seqid, start, end, strand) index -2023-02-20 13:26:55,425 - INFO - Running ANALYZE features - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/Saccharomyces_cerevisiae.R64-1-1.108.db. - -2023-02-20 13:26:55 -Loading sqlite3 db by gffutils from /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/Saccharomyces_ce -revisiae.R64-1-1.108.db to memory... -Done. - -2023-02-20 13:26:56 -Getting GENE DATABASE metrics... -Done. - -Sets maximum intron size equal 2583. Default is 1500000 bp. - - -2023-02-20 13:27:32 -Sorting exons attributes... - Sorted in I. - Sorted in II. - Sorted in III. - Sorted in IV. - Sorted in V. - Sorted in VI. - Sorted in VII. - Sorted in VIII. - Sorted in IX. - Sorted in X. - Sorted in XI. - Sorted in XII. - Sorted in XIII. - Sorted in XIV. - Sorted in XV. - Sorted in XVI. - Sorted in Mito. - Sorted in I. - Sorted in II. - Sorted in III. - Sorted in IV. - Sorted in V. - Sorted in VI. - Sorted in VII. - Sorted in VIII. - Sorted in IX. - Sorted in X. - Sorted in XI. - Sorted in XII. - Sorted in XIII. - Sorted in XIV. - Sorted in XV. - Sorted in XVI. - Sorted in Mito. - Sorted in I. - Sorted in II. - Sorted in III. - Sorted in IV. - Sorted in V. - Sorted in VI. - Sorted in VII. - Sorted in VIII. - Sorted in IX. - Sorted in X. - Sorted in XI. - Sorted in XII. - Sorted in XIII. - Sorted in XIV. - Sorted in XV. - Sorted in XVI. - Sorted in Mito. -Done. - - 2023-02-20 13:27:34 - Getting transcripts from /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta... - Done. - -2023-02-20 13:27:34 -Getting upper case fasta... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/Saccharomyces_cerevisiae.R64-1-1.dna. -toplevel.chr-rename.upper.fasta - -2023-02-20 13:27:34 -Aligning gg_mkc-16_mir-0.005_mg-1_gf-0.005 to Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.upper... - log can be found in /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/logs/gmap.gg_mkc-16_mir-0.005_ -mg-1_gf-0.005.err.log. - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.psl - -GMAP TIME: 0:00:18.891645 - - - -2023-02-20 13:27:53 -Extracting isoforms sequences... -Done. - -2023-02-20 13:28:34 -Getting blast database for /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/Saccharomyces_cerevis -iae.R64-1-1.108.isoforms.fa - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/Saccharomyces_cerevisiae.R64-1-1.108. -isoforms - -2023-02-20 13:28:34 -Transcripts: - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta -> gg_mkc-16_mir-0.005_mg-1_gf --0.005 -Reference: - /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -Gene coordinates: - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/Saccharomyces_cerevisiae.R64-1-1.108.cleared.g -tf - - -Processing transcripts from /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta: - - 2023-02-20 13:28:34 - Aligning /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta to /fh/fast/tsukiyama -_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/Saccharomyces_cerevisiae.R64-1-1.108.isoforms by blastn... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.b -last6 - log can be found in /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/logs/gg_mkc-16_mir-0.005_mg- -1_gf-0.005.blastn.log. - - 2023-02-20 13:28:38 - Getting BLAST alignments report files... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.a -ssembled.best.blast6 (contains best alignments for assembled transcripts) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.p -aralogs.best.blast6 (contains best alignments for assembled transcripts having paralogs) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.m -isassembled.best.blast6 (contains best alignments for misassembled transcripts) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.m -isassembled.blast6 (contains all alignments for misassembled transcripts) - - 2023-02-20 13:28:39 - Getting GMAP (or BLAT) alignments report files... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.a -ssembled.best.psl (contains best alignments for assembled transcripts) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.u -niquely.psl (contains best alignments for uniquely aligned assembled transcripts) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.p -aralogs.best.psl (contains best alignments for assembled transcripts having paralogs) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.m -isassembled.best.psl (contains best alignments for misassembled transcripts) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.m -isassembled.psl (contains all alignments for misassembled transcripts) - - 2023-02-20 13:28:47 - Processing assembled aligned transcripts... - Done. - - 2023-02-20 13:33:07 - Processing misassembled aligned transcripts... - Done. - - 2023-02-20 13:33:07 - Processing misassembled aligned transcripts... - Done. - - 2023-02-20 13:33:07 - Getting BASIC TRANSCRIPTS metrics... - Done. - Getting ALIGNMENT metrics... - Done. - Getting SPECIFICITY metrics... - Done. - Getting SENSITIVITY metrics... - Done. - -Getting SEPARATED report for gg_mkc-16_mir-0.005_mg-1_gf-0.005... - - 2023-02-20 13:34:29 - Getting TXT report... - Getting GENE DATABASE METRICS report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/database_metrics.txt - Getting BASIC TRANSCRIPTS METRICS report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/basic_metrics.txt - Getting ALIGNMENT METRICS report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/alignment_metrics.txt - Getting ALIGNMENT METRICS FOR MISASSEMBLED (CHIMERIC) TRANSCRIPTS report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/misassemblies.txt - Getting ASSEMBLY COMPLETENESS (SENSITIVITY) report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/sensitivity.txt - Getting ASSEMBLY SPECIFICITY report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/specificity.txt - Done. - - 2023-02-20 13:34:29 - Getting DISTRIBUTION report... - Drawing cumulative transcript / isoform length plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/transcript_length.png - Drawing cumulative blocks / exons length plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/block_length.png - Drawing cumulative transcript aligned fraction plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-aligned.png - Drawing cumulative number of blocks / exons per alignment / isoform plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/blocks_per_alignment.png - Drawing cumulative alignment multiplicity plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/alignment_multiplicity.png - Drawing cumulative substitution errors per alignment plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/mismatch_rate.png - Drawing Nx plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/Nx.png - Drawing NAx plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/NAx.png - Drawing cumulative transcript matched fraction histogram... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-matched.png - Drawing cumulative block matched fraction histogram... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-matched_blocks.png - Drawing cumulative isoform assembled fraction histogram... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-assembled.png - Drawing cumulative exon assembled fraction histogram... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-assembled_exons.png - Drawing cumulative isoform covered fraction histogram... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-covered.png - Drawing cumulative exon covered fraction histogram... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-covered_exons.png - Drawing cumulative number of alignments per isoform plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/alignments_per_isoform.png - Done. - - 2023-02-20 13:34:33 - Getting OTHER reports... - Getting Unaligned transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.unaligned.fasta - Getting Paralogous transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.paralogs.fasta - Getting Misassembled transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.misassembled.fasta - Getting Misassembled by BLAT transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.misassembled.blat.fasta - Getting Misassembled by BLASTN transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.misassembled.blast.fasta - Getting Unique aligned transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.correct.fasta - Getting Unannotated transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.unannotated.fasta - Getting fully assembled isoforms list... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.95%-assembled.list - Getting well assembled isoforms list... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.50%-assembled.list - Done. - -2023-02-20 13:34:33 -Getting SHORT SUMMARY report... - saved to - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/short_report.txt - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/short_report.tex - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/short_report.pdf - -THE QUALITY OF TRANSCRIPTOME ASSEMBLY DONE. RESULTS: /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3 - -Separated assemblies reports are saved to - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/gg_mkc-16_mir-0.005_mg-1_gf-0.005_output - PDF version (tables and plots) saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/short_repo -rt.pdf - TXT version (tables and plots) saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/short_repo -rt.txt - -Log saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-3/logs/rnaQUAST.log - -Finished: 2023-02-20 13:34:35 -Elapsed time: 0:07:44.547183 -NOTICEs: 0; WARNINGs: 0; non-fatal ERRORs: 0 - -Thank you for using rnaQUAST! -``` -
-
- - -### Prepare for and perform run 4 - -#### Code -
-Code: Prepare for and perform run 4 - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -tmux ls -tmux new -s run_4 # then detach -tmux a -t run_4 - -grabnode # 16, defaults -source activate rnaquast_curr_env - -transcriptome && - { - cd "results/2023-0218/" \ - || echo "cd'ing failed; check on this..." - } - -n_GG="gg_mkc-16_mir-0.005_mg-1_gf-0.005" -f_GG="./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta" -p_ref="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -f_ref="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" -p_gtf="${HOME}/genomes/sacCer3/Ensembl/108/gtf" -f_gtf="Saccharomyces_cerevisiae.R64-1-1.108.gtf" -p_gmap="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -d_gmap="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap" -p_f_busco="BUSCO/saccharomycetes_odb10" - -d_out="outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4" -if [[ ! -d "${d_out}" ]]; then - mkdir "${d_out}" -fi - -echo "${SLURM_CPUS_ON_NODE}" -echo "${n_GG}" -echo "${f_GG}" -echo "${p_ref}/${f_ref}" -echo "${p_gtf}/${f_gtf}" -echo "${p_gmap}/${d_gmap}" -echo "${d_out}" -echo "${p_f_busco}" - -rnaQUAST.py \ - -t "${SLURM_CPUS_ON_NODE}" \ - --labels "${n_GG}" \ - --transcripts "${f_GG}" \ - --reference "${p_ref}/${f_ref}" \ - --gtf "${p_gtf}/${f_gtf}" \ - --gmap_index "${p_gmap}/${d_gmap}" \ - --strand_specific \ - --output_dir "${d_out}" \ - --busco "${p_f_busco}" \ - --gene_mark \ - --disable_infer_genes \ - --disable_infer_transcripts -``` -
-
- - -#### Printed -
-Printed: Prepare for and perform run 4 - -```txt -❯ transcriptome && -> { -> cd "results/2023-0218/" \ -> || echo "cd'ing failed; check on this..." -> } -/home/kalavatt/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218 - - -❯ if [[ ! -d "${d_out}" ]]; then -> mkdir "${d_out}" -> fi -mkdir: created directory 'outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4' - - -❯ echo "${SLURM_CPUS_ON_NODE}" -16 - - -❯ echo "${n_GG}" -gg_mkc-16_mir-0.005_mg-1_gf-0.005 - - -❯ echo "${f_GG}" -./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta - - -❯ echo "${p_ref}/${f_ref}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - - -❯ echo "${p_gtf}/${f_gtf}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/gtf/Saccharomyces_cerevisiae.R64-1-1.108.gtf - - -❯ echo "${p_gmap}/${d_gmap}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap - - -❯ echo "${d_out}" -outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4 - - -❯ echo "${p_f_busco}" -BUSCO/saccharomycetes_odb10 - - -❯ rnaQUAST.py \ -> -t "${SLURM_CPUS_ON_NODE}" \ -> --labels "${n_GG}" \ -> --transcripts "${f_GG}" \ -> --reference "${p_ref}/${f_ref}" \ -> --gtf "${p_gtf}/${f_gtf}" \ -> --gmap_index "${p_gmap}/${d_gmap}" \ -> --strand_specific \ -> --output_dir "${d_out}" \ -> --busco "${p_f_busco}" \ -> --gene_mark \ -> --disable_infer_genes \ -> --disable_infer_transcripts -/home/kalavatt/miniconda3/envs/rnaquast_curr_env/share/rnaquast-2.2.1-0/rnaQUAST.py -t 16 --labels gg_mkc-16_mir-0.005_mg-1_gf-0.005 --transcripts ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.0 -05.Trinity-GG.fasta --reference /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --gtf /home/kalavatt/genomes/sacCer3/Ensembl/108/gtf/Saccharo -myces_cerevisiae.R64-1-1.108.gtf --gmap_index /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap --strand_specific --output_dir outfiles_rn -aQUAST-test_Trinity-GG_Q-N_2022-0220_run-4 --busco BUSCO/saccharomycetes_odb10 --gene_mark --disable_infer_genes --disable_infer_transcripts - -rnaQUAST: 2.2.1 - -System information: - OS: Linux-4.15.0-192-generic-x86_64-with-debian-buster-sid (linux_64) - Python version: 3.7.12 - CPUs number: 36 - -External tools: - matplotlib: 3.5.3 - joblib: 1.2.0 - gffutils: 0.11.1 - blastn: 2.13.0+ - makeblastdb: 2.13.0+ - gmap: 2017-11-15 - BUSCO: 5.4.5 - GeneMarkS_T: unknown - -Started: 2023-02-20 13:29:02 - -Logging to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/logs/rnaQUAST.log - -2023-02-20 13:29:02 -Getting reference... -Done. -Using strand specific transcripts... - -2023-02-20 13:29:03 -Creating sqlite3 db by gffutils... -2023-02-20 13:29:06,545 - INFO - Committing changes: 41000 features -2023-02-20 13:29:06,631 - INFO - Populating features table and first-order relations: 41878 features -2023-02-20 13:29:06,640 - INFO - Creating relations(parent) index -2023-02-20 13:29:06,674 - INFO - Creating relations(child) index -2023-02-20 13:29:06,709 - INFO - Creating features(featuretype) index -2023-02-20 13:29:06,725 - INFO - Creating features (seqid, start, end) index -2023-02-20 13:29:06,750 - INFO - Creating features (seqid, start, end, strand) index -2023-02-20 13:29:06,776 - INFO - Running ANALYZE features - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/Saccharomyces_cerevisiae.R64-1-1.108.db. - -2023-02-20 13:29:06 -Loading sqlite3 db by gffutils from /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/Saccharomyces_ce -revisiae.R64-1-1.108.db to memory... -Done. - -2023-02-20 13:29:07 -Getting GENE DATABASE metrics... -Done. - -Sets maximum intron size equal 2583. Default is 1500000 bp. - - -2023-02-20 13:29:44 -Sorting exons attributes... - Sorted in I. - Sorted in II. - Sorted in III. - Sorted in IV. - Sorted in V. - Sorted in VI. - Sorted in VII. - Sorted in VIII. - Sorted in IX. - Sorted in X. - Sorted in XI. - Sorted in XII. - Sorted in XIII. - Sorted in XIV. - Sorted in XV. - Sorted in XVI. - Sorted in Mito. - Sorted in I. - Sorted in II. - Sorted in III. - Sorted in IV. - Sorted in V. - Sorted in VI. - Sorted in VII. - Sorted in VIII. - Sorted in IX. - Sorted in X. - Sorted in XI. - Sorted in XII. - Sorted in XIII. - Sorted in XIV. - Sorted in XV. - Sorted in XVI. - Sorted in Mito. - Sorted in I. - Sorted in II. - Sorted in III. - Sorted in IV. - Sorted in V. - Sorted in VI. - Sorted in VII. - Sorted in VIII. - Sorted in IX. - Sorted in X. - Sorted in XI. - Sorted in XII. - Sorted in XIII. - Sorted in XIV. - Sorted in XV. - Sorted in XVI. - Sorted in Mito. -Done. - - 2023-02-20 13:29:46 - Getting transcripts from /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta... - Done. - -2023-02-20 13:29:46 -Getting upper case fasta... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/Saccharomyces_cerevisiae.R64-1-1.dna. -toplevel.chr-rename.upper.fasta - -2023-02-20 13:29:46 -Aligning gg_mkc-16_mir-0.005_mg-1_gf-0.005 to Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.upper... - log can be found in /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/logs/gmap.gg_mkc-16_mir-0.005_ -mg-1_gf-0.005.err.log. - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.psl - -GMAP TIME: 0:00:17.821596 - - - -2023-02-20 13:30:04 -Extracting isoforms sequences... -Done. - -2023-02-20 13:30:47 -Getting blast database for /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/Saccharomyces_cerevis -iae.R64-1-1.108.isoforms.fa - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/Saccharomyces_cerevisiae.R64-1-1.108. -isoforms - -2023-02-20 13:30:47 -Transcripts: - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta -> gg_mkc-16_mir-0.005_mg-1_gf --0.005 -Reference: - /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta -Gene coordinates: - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/Saccharomyces_cerevisiae.R64-1-1.108.cleared.g -tf - - -Processing transcripts from /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta: - - 2023-02-20 13:30:47 - Aligning /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta to /fh/fast/tsukiyama -_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/Saccharomyces_cerevisiae.R64-1-1.108.isoforms by blastn... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.b -last6 - log can be found in /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/logs/gg_mkc-16_mir-0.005_mg- -1_gf-0.005.blastn.log. - - 2023-02-20 13:30:51 - Getting BLAST alignments report files... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.a -ssembled.best.blast6 (contains best alignments for assembled transcripts) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.p -aralogs.best.blast6 (contains best alignments for assembled transcripts having paralogs) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.m -isassembled.best.blast6 (contains best alignments for misassembled transcripts) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.m -isassembled.blast6 (contains all alignments for misassembled transcripts) - - 2023-02-20 13:30:52 - Getting GMAP (or BLAT) alignments report files... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.a -ssembled.best.psl (contains best alignments for assembled transcripts) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.u -niquely.psl (contains best alignments for uniquely aligned assembled transcripts) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.p -aralogs.best.psl (contains best alignments for assembled transcripts having paralogs) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.m -isassembled.best.psl (contains best alignments for misassembled transcripts) - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/tmp/gg_mkc-16_mir-0.005_mg-1_gf-0.005.m -isassembled.psl (contains all alignments for misassembled transcripts) - - 2023-02-20 13:31:01 - Processing assembled aligned transcripts... - Done. - - 2023-02-20 13:35:12 - Processing misassembled aligned transcripts... - Done. - - 2023-02-20 13:35:12 - Processing misassembled aligned transcripts... - Done. - - 2023-02-20 13:35:12 - Getting BASIC TRANSCRIPTS metrics... - Done. - Getting ALIGNMENT metrics... - Done. - Getting SPECIFICITY metrics... - Done. - Getting SENSITIVITY metrics... - -2023-02-20 13:36:25 - Running BUSCO (Benchmarking Universal Single-Copy Orthologs)... - -ERROR! busco failed for gg_mkc-16_mir-0.005_mg-1_gf-0.005! - logs can be found in /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/logs/gg_mkc-16_mir-0.005_mg --1_gf-0.005.busco.out.log and /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/logs/gg_mkc-16_mir-0.0 -05_mg-1_gf-0.005.busco.err.log. - -2023-02-20 13:36:29 - Running GeneMarkS-T (Gene Prediction in Transcripts)... - -ERROR! GeneMarkS-T failed for gg_mkc-16_mir-0.005_mg-1_gf-0.005! - logs can be found in /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/logs/gg_mkc-16_mir-0.005_mg --1_gf-0.005.GeneMarkS_T.out.log and /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/logs/gg_mkc-16_m -ir-0.005_mg-1_gf-0.005.GeneMarkS_T.err.log. - Done. - -Getting SEPARATED report for gg_mkc-16_mir-0.005_mg-1_gf-0.005... [61/393] - - 2023-02-20 13:36:30 - Getting TXT report... - Getting GENE DATABASE METRICS report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/database_metrics.txt - Getting BASIC TRANSCRIPTS METRICS report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/basic_metrics.txt - Getting ALIGNMENT METRICS report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/alignment_metrics.txt - Getting ALIGNMENT METRICS FOR MISASSEMBLED (CHIMERIC) TRANSCRIPTS report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/misassemblies.txt - Getting ASSEMBLY COMPLETENESS (SENSITIVITY) report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/sensitivity.txt - Getting ASSEMBLY SPECIFICITY report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/specificity.txt - Done. - - 2023-02-20 13:36:30 - Getting DISTRIBUTION report... - Drawing cumulative transcript / isoform length plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/transcript_length.png - Drawing cumulative blocks / exons length plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/block_length.png - Drawing cumulative transcript aligned fraction plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-aligned.png - Drawing cumulative number of blocks / exons per alignment / isoform plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/blocks_per_alignment.png - Drawing cumulative alignment multiplicity plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/alignment_multiplicity.png - Drawing cumulative substitution errors per alignment plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/mismatch_rate.png - Drawing Nx plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/Nx.png - Drawing NAx plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/NAx.png - Drawing cumulative transcript matched fraction histogram... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-matched.png - Drawing cumulative block matched fraction histogram... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-matched_blocks.png - Drawing cumulative isoform assembled fraction histogram... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-assembled.png - Drawing cumulative exon assembled fraction histogram... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-assembled_exons.png - Drawing cumulative isoform covered fraction histogram... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-covered.png - Drawing cumulative exon covered fraction histogram... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/x-covered_exons.png - Drawing cumulative number of alignments per isoform plot... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/alignments_per_isoform.png - Done. - - 2023-02-20 13:36:34 - Getting OTHER reports... - Getting Unaligned transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.unaligned.fasta - Getting Paralogous transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.paralogs.fasta - Getting Misassembled transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.misassembled.fasta - Getting Misassembled by BLAT transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.misassembled.blat.fasta - Getting Misassembled by BLASTN transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.misassembled.blast.fasta - Getting Unique aligned transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.correct.fasta - Getting Unannotated transcripts report... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.unannotated.fasta - Getting fully assembled isoforms list... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.95%-assembled.list - Getting well assembled isoforms list... - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_out -put/gg_mkc-16_mir-0.005_mg-1_gf-0.005.50%-assembled.list - Done. - -2023-02-20 13:36:34 -Getting SHORT SUMMARY report... - saved to - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/short_report.txt - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/short_report.tex - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/short_report.pdf - -THE QUALITY OF TRANSCRIPTOME ASSEMBLY DONE. RESULTS: /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4 - -Separated assemblies reports are saved to - /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/gg_mkc-16_mir-0.005_mg-1_gf-0.005_output - PDF version (tables and plots) saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/short_repo -rt.pdf - TXT version (tables and plots) saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/short_repo -rt.txt - -Log saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-4/logs/rnaQUAST.log - -Finished: 2023-02-20 13:36:36 -Elapsed time: 0:07:33.274793 -NOTICEs: 0; WARNINGs: 0; non-fatal ERRORs: 2 - -non-fatal ERRORs: - non-fatal ERROR: busco failed for gg_mkc-16_mir-0.005_mg-1_gf-0.005! - non-fatal ERROR: GeneMarkS-T failed for gg_mkc-16_mir-0.005_mg-1_gf-0.005! - -Thank you for using rnaQUAST! -``` -
-
- - -### Prepare for and perform run 5 - -#### Code -
-Code: Prepare for and perform run 5 - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -tmux new -s run_5 # then detach -tmux a -t run_5 - -grabnode # 16, defaults -source activate rnaquast_curr_env - -transcriptome && - { - cd "results/2023-0218/" \ - || echo "cd'ing failed; check on this..." - } - - -# Arrays ----------------------------- -unset f_GG -typeset -a f_GG -while IFS=" " read -r -d $'\0'; do - f_GG+=( "${REPLY}" ) -done < <(\ - find "./Trinity_GG.Q_N/" \ - -maxdepth 3 \ - -type f \ - -name "*.fasta" \ - -print0 \ - | sort -z\ -) -echo_test "${f_GG[@]}" -echo "${#f_GG[@]}" # 285 - -unset n_GG -typeset -a n_GG -for i in "${f_GG[@]}"; do - # i="${f_GG[0]}" # echo "${i}" - name="$(basename "${i}" .Trinity-GG.fasta)" # echo "${name}" - n_GG+=( "${name#trinity-}" ) -done -echo_test "${n_GG[@]}" -echo "${#n_GG[@]}" # 285 - -# Check that files and names match -echo_test "${f_GG[@]}" | head -echo_test "${n_GG[@]}" | head -echo_test "${f_GG[@]}" | tail -echo_test "${n_GG[@]}" | tail - - -# Variables -------------------------- -p_ref="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -f_ref="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" - -p_gtf="${HOME}/genomes/sacCer3/Ensembl/108/gtf" -f_gtf="Saccharomyces_cerevisiae.R64-1-1.108.gtf" - -p_gmap="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -d_gmap="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap" - -d_out="outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-5" -if [[ ! -d "${d_out}" ]]; then - mkdir "${d_out}" -fi - -echo "${SLURM_CPUS_ON_NODE}" -echo "${p_ref}/${f_ref}" -echo "${p_gtf}/${f_gtf}" -echo "${p_gmap}/${d_gmap}" -echo "${d_out}" - -rnaQUAST.py \ - -t "${SLURM_CPUS_ON_NODE}" \ - --labels ${n_GG[*]} \ - --transcripts ${f_GG[*]} \ - --reference "${p_ref}/${f_ref}" \ - --gtf "${p_gtf}/${f_gtf}" \ - --gmap_index "${p_gmap}/${d_gmap}" \ - --strand_specific \ - --disable_infer_genes \ - --disable_infer_transcripts - -#NOTE 1/3 Forgot to point to the output directory, so the results are -#NOTE 2/3 being written to... -#NOTE 3/3 ${HOME}/miniconda3/envs/rnaquast_curr_env/bin/rnaQUAST_results/results_2023_02_20_14_40_40 - -#TODO 1/2 When the job is completed, mv .../results_2023_02_20_14_40_40 to -#TODO 2/2 "${d_out}" -``` -
-
- - -#### Printed -
-Printed: Prepare for and perform run 5 - -```txt -(just check the logs) -``` -
-
- - -### Prepare for and perform run 6 - -#### Code -
-Code: Prepare for and perform run 6 - -```bash -#!/bin/bash -#DONTRUN #CONTINUE - -tmux new -s run_6 # then detach -tmux a -t run_6 - -grabnode # 16, defaults -source activate rnaquast_curr_env - -transcriptome && - { - cd "results/2023-0218/" \ - || echo "cd'ing failed; check on this..." - } - - -# Symlink bams in new bams/ directory -------------------- -#+ ...for use with rnaquast -sam option -if [[ ! -d bams/ ]]; then - mkdir bams/ -fi - -cd "bams/" \ - || echo "cd'ing failed; check on this..." - -find_relative_path() { - realpath --relative-to="${1}" "${2}" -} - - -UTK_prim_no="$( - find_relative_path \ - . \ - "${HOME}/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0215/bams_renamed/UTK_prim_no" -)" -echo "${UTK_prim_no}" - -ln -s "${UTK_prim_no}/WT_Q_day7_N_rep1.UTK_prim.bam" "WT_Q_day7_N_rep1.UTK_prim.bam" -ln -s "${UTK_prim_no}/WT_Q_day7_N_rep2.UTK_prim.bam" "WT_Q_day7_N_rep2.UTK_prim.bam" - - -# Index and merge the two replicates --------------------- -ml SAMtools/1.16.1-GCC-11.2.0 - -if [[ ! -f "WT_Q_day7_N_rep1.UTK_prim.bam.bai" ]]; then - samtools index -@ "${SLURM_CPUS_ON_NODE}" "WT_Q_day7_N_rep1.UTK_prim.bam" -fi - -if [[ ! -f "WT_Q_day7_N_rep2.UTK_prim.bam.bai" ]]; then - samtools index -@ "${SLURM_CPUS_ON_NODE}" "WT_Q_day7_N_rep2.UTK_prim.bam" -fi - -if [[ ! -f "WT_Q_day7_N_merged.UTK_prim.bam" ]]; then - samtools merge \ - -@ "${SLURM_CPUS_ON_NODE}" \ - -o "WT_Q_day7_N_merged.UTK_prim.bam" \ - "WT_Q_day7_N_rep1.UTK_prim.bam" \ - "WT_Q_day7_N_rep2.UTK_prim.bam" -fi - -# Index merged bam, then convert it to a sam file -------- -if [[ ! -f "WT_Q_day7_N_merged.UTK_prim.bam.bai" ]]; then - samtools index -@ "${SLURM_CPUS_ON_NODE}" "WT_Q_day7_N_merged.UTK_prim.bam" -fi - -if [[ ! -f "WT_Q_day7_N_merged.UTK_prim.sam" ]]; then - samtools view \ - -@ "${SLURM_CPUS_ON_NODE}" -h \ - -o "WT_Q_day7_N_merged.UTK_prim.sam" \ - "WT_Q_day7_N_merged.UTK_prim.bam" -fi - - -# Set up variables and outdirectory ---------------------- -n_GG="gg_mkc-16_mir-0.005_mg-1_gf-0.005" -f_GG="./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta" -p_ref="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -f_ref="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta" -p_gtf="${HOME}/genomes/sacCer3/Ensembl/108/gtf" -f_gtf="Saccharomyces_cerevisiae.R64-1-1.108.gtf" -p_gmap="${HOME}/genomes/sacCer3/Ensembl/108/DNA" -d_gmap="Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap" -p_f_sam="bams/WT_Q_day7_N_merged.UTK_prim.sam" - -d_out="outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-6" -if [[ ! -d "${d_out}" ]]; then - mkdir "${d_out}" -fi - -echo "${SLURM_CPUS_ON_NODE}" -echo "${n_GG}" -echo "${f_GG}" -echo "${p_ref}/${f_ref}" -echo "${p_gtf}/${f_gtf}" -echo "${p_gmap}/${d_gmap}" -echo "${p_f_sam}" -., "${p_f_sam}" -echo "${d_out}" - -rnaQUAST.py \ - -t "${SLURM_CPUS_ON_NODE}" \ - --labels "${n_GG}" \ - --transcripts "${f_GG}" \ - --reference "${p_ref}/${f_ref}" \ - --gtf "${p_gtf}/${f_gtf}" \ - --gmap_index "${p_gmap}/${d_gmap}" \ - --strand_specific \ - -sam "${p_f_sam}" \ - --output_dir "${d_out}" \ - --disable_infer_genes \ - --disable_infer_transcripts -``` -
-
- - -#### Printed -
-Printed: Prepare for and perform run 6 - -```txt -❯ echo "${SLURM_CPUS_ON_NODE}" -16 - - -❯ echo "${n_GG}" -gg_mkc-16_mir-0.005_mg-1_gf-0.005 - - -❯ echo "${f_GG}" -./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta - - -❯ echo "${p_ref}/${f_ref}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta - - -❯ echo "${p_gtf}/${f_gtf}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/gtf/Saccharomyces_cerevisiae.R64-1-1.108.gtf - - -❯ echo "${p_gmap}/${d_gmap}" -/home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap - - -❯ echo "${p_f_sam}" -bams/WT_Q_day7_N_merged.UTK_prim.sam - - -❯ ., "${p_f_sam}" --rw-rw---- 1 kalavatt 18G Feb 21 09:07 bams/WT_Q_day7_N_merged.UTK_prim.sam - - -❯ echo "${d_out}" -outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-6 - - -❯ rnaQUAST.py \ - -t "${SLURM_CPUS_ON_NODE}" \ - --labels "${n_GG}" \ - --transcripts "${f_GG}" \ - --reference "${p_ref}/${f_ref}" \ - --gtf "${p_gtf}/${f_gtf}" \ - --gmap_index "${p_gmap}/${d_gmap}" \ - --strand_specific \ - -sam "${p_f_sam}" \ - --output_dir "${d_out}" \ - --disable_infer_genes \ - --disable_infer_transcripts -/home/kalavatt/miniconda3/envs/rnaquast_curr_env/share/rnaquast-2.2.1-0/rnaQUAST.py -t 16 --labels gg_mkc-16_mir-0.005_mg-1_gf-0.005 --transcripts ./Trinity_GG.Q_N/trinity-gg_mkc-16_mir-0.005_mg-1_gf-0.005.Trinity-GG.fasta --reference /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta --gtf /home/kalavatt/genomes/sacCer3/Ensembl/108/gtf/Saccharomyces_cerevisiae.R64-1-1.108.gtf --gmap_index /home/kalavatt/genomes/sacCer3/Ensembl/108/DNA/Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.chr-rename.fasta.gmap --strand_specific -sam bams/WT_Q_day7_N_merged.UTK_prim.sam --output_dir outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-6 --disable_infer_genes --disable_infer_transcripts - -rnaQUAST: 2.2.1 - -System information: - OS: Linux-4.15.0-192-generic-x86_64-with-debian-buster-sid (linux_64) - Python version: 3.7.12 - CPUs number: 24 - -External tools: - matplotlib: 3.5.3 - joblib: 1.2.0 - gffutils: 0.11.1 - blastn: 2.13.0+ - makeblastdb: 2.13.0+ - gmap: 2017-11-15 - -Started: 2023-02-21 09:13:10 - -Logging to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-6/logs/rnaQUAST.log - -2023-02-21 09:13:10 -Getting reference... -Done. -Using strand specific transcripts... - -2023-02-21 09:13:11 -Creating sqlite3 db by gffutils... -2023-02-21 09:13:14,608 - INFO - Committing changes: 41000 features -2023-02-21 09:13:14,692 - INFO - Populating features table and first-order relations: 41878 features -2023-02-21 09:13:14,700 - INFO - Creating relations(parent) index -2023-02-21 09:13:14,729 - INFO - Creating relations(child) index -2023-02-21 09:13:14,756 - INFO - Creating features(featuretype) index -2023-02-21 09:13:14,768 - INFO - Creating features (seqid, start, end) index -2023-02-21 09:13:14,786 - INFO - Creating features (seqid, start, end, strand) index -2023-02-21 09:13:14,806 - INFO - Running ANALYZE features - saved to /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-6/Saccharomyces_cerevisiae.R64-1-1.108.db. - -2023-02-21 09:13:14 -Loading sqlite3 db by gffutils from /fh/fast/tsukiyama_t/grp/tsukiyamalab/kalavatt/2022_transcriptome-construction/results/2023-0218/outfiles_rnaQUAST-test_Trinity-GG_Q-N_2022-0220_run-6/Saccharomyces_cerevisiae.R64-1-1.108.db to memory... -Done. -``` -
-
diff --git a/tmp/2023-0202_umi-tools_dedup/processing_draft.R b/tmp/2023-0202_umi-tools_dedup/processing_draft.R deleted file mode 100644 index dfb8a44..0000000 --- a/tmp/2023-0202_umi-tools_dedup/processing_draft.R +++ /dev/null @@ -1,121 +0,0 @@ -#!/usr/bin Rscript - -# check_umi-tools_dedup.R -# KA - -library(tidyverse) -library(beeswarm) - -setwd("/Users/kalavatt/projects-etc/2022_transcriptome-construction/tmp/2023-0202_umi-tools_dedup") -list.files() - -# stackoverflow.com/questions/45665496/how-would-one-readlines-from-a-gzip-file-in-r -# stackoverflow.com/questions/68197596/how-to-read-lines-in-r-starting-with-certain-string -sample <- "5782_Q_IN_S8.UMIs" -f_1 <- paste0(sample, ".dedu-adjusted.stdout.txt.gz") -f_2 <- paste0(sample, ".dedu-adjusted.stats_per_umi.tsv.gz") - -rl <- readLines(gzcon(file(f_1, open="rb"))) -stats_per_umi <- readr::read_tsv(f_2) - -strings <- c( - "INFO total_umis", - "INFO #umis", - "INFO Reads: Input Reads:", - "INFO Number of reads out:", - "INFO Total number of positions deduplicated:", - "INFO Mean number of unique UMIs per position:", - "INFO Max. number of unique UMIs per position:" -) - -# stackoverflow.com/questions/31774086/extracting-text-after-last-period-in-string -UMIs_total <- rl[grep(strings[1], rl)] %>% - sub('.*total_umis ', '', .) %>% - as.integer() -UMIs_unique_pre <- rl[grep(strings[2], rl)] %>% - sub('.*#umis ', '', .) %>% - as.integer() -UMIs_unique_post <- - stats_per_umi[stats_per_umi$median_counts_post > 0, ]$UMI %>% - unique() %>% - length() %>% - as.integer() -UMIs_unique_post_pct <- round( - (UMIs_unique_post / UMIs_unique_pre) * 100, digits = 2 -) -UMIs_unique_rm <- UMIs_unique_pre - UMIs_unique_post -UMIs_unique_rm_pct <- round( - (UMIs_unique_rm / UMIs_unique_pre) * 100, digits = 2 -) - -reads_pre <- rl[grep(strings[3], rl)] %>% - sub('.*\\: ', '', .) %>% - as.integer() -reads_post <- rl[grep(strings[4], rl)] %>% - sub('.*\\: ', '', .) %>% - as.integer() -reads_post_pct <- round((reads_post / reads_pre) * 100, digits = 2) -reads_rm <- reads_pre - reads_post -reads_rm_pct <- round((reads_rm / reads_pre) * 100, digits = 2) - -pos_dedup <- rl[grep(strings[5], rl)] %>% - sub('.*\\: ', '', .) %>% - as.integer() -UMIs_pos_mean <- rl[grep(strings[6], rl)] %>% - sub('.*\\: ', '', .) %>% - as.double() -UMIs_pos_max <- rl[grep(strings[7], rl)] %>% - sub('.*\\: ', '', .) %>% - as.integer() - -# Plot the read deduplication rates: Stacked barchart ------------------------ -x1 <- tibble::tibble( - class = c("UMIs", "UMIs"), - type = c("UMIs_unique_kp", "UMIs_unique_rm"), - counts = c(UMIs_unique_post, UMIs_unique_rm) -) -# Absolute -ggplot2::ggplot(x1, ggplot2::aes(x = class, y = counts, fill = type)) + - ggplot2::geom_bar(position = "stack", stat = "identity") -# Percent -ggplot2::ggplot(x1, ggplot2::aes(x = class, y = counts, fill = type)) + - ggplot2::geom_bar(position = "fill", stat = "identity") -#TODO Flip UMIs_unique_kp and UMIs_unique_rm in plot - - -# Plot the read removal rates: Stacked barchart ------------------------------ -x2 <- tibble::tibble( - class = c("reads", "reads"), - type = c("reads_kp", "reads_rm"), - counts = c(reads_post, reads_rm) -) -# Absolute -ggplot2::ggplot(x2, ggplot2::aes(x = class, y = counts, fill = type)) + - ggplot2::geom_bar(position = "stack", stat = "identity") -# Percent -ggplot2::ggplot(x2, ggplot2::aes(x = class, y = counts, fill = type)) + - ggplot2::geom_bar(position = "fill", stat = "identity") -#TODO Flip reads_kp and reads_rm in plot - - -# Generate a swarmplot of umi stats ------------------------------------------ -#TODO Need to read in data for multiple samples... -# "positions_deduplicated" -# "total_umis" -# "unique_umis" -# "mean_umi_per_pos" -# "max_umi_per_pos" - -#STRATEGY Make a simple script to collect values from outfiles and print the -#+ results; append the results to a .txt dataframe in real time, with samples -#+ as column and features as rows; finally, use these data.frames as input to -#+ beeswarm in a separate script - - -#INPROGRESS Make a bar graph for reads in, reads out, and no. reads removed -#TODO Make a beeswarm plot for -#+ - pos_dedup -#+ - UMIs_total -#+ - -#TODO Fr/f2, read in/calculate UMIs_total pre- and post-deduplication -#DONE Fr/f2, read in/calculate UMIs_unique pre- and post-deduplication diff --git a/tmp/analyze_flags.sh b/tmp/analyze_flags.sh deleted file mode 100644 index 5ecf24b..0000000 --- a/tmp/analyze_flags.sh +++ /dev/null @@ -1,206 +0,0 @@ -#!/bin/bash - -# analyze_flags.sh -# KA - -# 17633940 83 -# 17633940 163 -# 17172488 99 -# 17172488 147 -# 12581234 419 # not primary -# 12581234 339 # not primary -# 1642164 77 # not mapped -# 1642164 141 # not mapped -# 990420 403 # not primary, but is it valid? -# 990420 355 # not primary, but is it valid? -# 2780 89 # not mapped -# 2779 165 -# 2587 133 -# 2586 73 -# 2188 345 # not mapped and not primary -# 124 329 # not mapped and not primary -# 6 409 # not mapped and not primary -# 3 153 -# 3 101 # not mapped -# -# 419 Summary (not primary version of 163): -# read paired (0x1) -# read mapped in proper pair (0x2) -# mate reverse strand (0x20) -# second in pair (0x80) -# not primary alignment (0x100) -# -# 339 Summary (not primary version of 83): -# read paired (0x1) -# read mapped in proper pair (0x2) -# read reverse strand (0x10) -# first in pair (0x40) -# not primary alignment (0x100) -# -# 403 Summary (not primary version of 147): -# read paired (0x1) -# read mapped in proper pair (0x2) -# read reverse strand (0x10) -# second in pair (0x80) -# not primary alignment (0x100) -# -# 355 Summary (not primary version of 99): -# read paired (0x1) -# read mapped in proper pair (0x2) -# mate reverse strand (0x20) -# first in pair (0x40) -# not primary alignment (0x100) -# -# Cool, informative links of bam flags -# - https://ppotato.wordpress.com/2010/08/25/samtool-bitwise-flag-paired-reads/ -# - https://www.samformat.info/sam-format-flag -# - https://davetang.org/muse/2014/03/06/understanding-bam-flags/ - -{ - flags=( - 83 - 163 - 99 - 147 - 419 - 339 - 77 - 141 - 403 - 355 - 89 - 165 - 133 - 73 - 345 - 329 - 409 - 153 - 101 - ) - - for i in "${flags[@]}"; do - echo "❯ perl bin/parse_bam-flag.pl ${i}" - perl bin/parse_bam-flag.pl "${i}" - echo "" - done -} - -# ❯ perl bin/parse_bam-flag.pl 83 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# each segment properly aligned according to the aligner, i.e., read mapped in proper pair (0x2) -# SEQ being reverse complemented, i.e., read reverse strand (0x10) -# the first segment in the template, i.e., first in pair (0x40) -# -# ❯ perl bin/parse_bam-flag.pl 163 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# each segment properly aligned according to the aligner, i.e., read mapped in proper pair (0x2) -# SEQ of the next segment in the template being reversed, i.e., mate reverse strand (0x20) -# the last segment in the template, i.e., second in pair (0x80) -# -# ❯ perl bin/parse_bam-flag.pl 99 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# each segment properly aligned according to the aligner, i.e., read mapped in proper pair (0x2) -# SEQ of the next segment in the template being reversed, i.e., mate reverse strand (0x20) -# the first segment in the template, i.e., first in pair (0x40) -# -# ❯ perl bin/parse_bam-flag.pl 147 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# each segment properly aligned according to the aligner, i.e., read mapped in proper pair (0x2) -# SEQ being reverse complemented, i.e., read reverse strand (0x10) -# the last segment in the template, i.e., second in pair (0x80) -# -# ❯ perl bin/parse_bam-flag.pl 419 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# each segment properly aligned according to the aligner, i.e., read mapped in proper pair (0x2) -# SEQ of the next segment in the template being reversed, i.e., mate reverse strand (0x20) -# the last segment in the template, i.e., second in pair (0x80) -# secondary alignment, i.e., not primary alignment (0x100) -# -# ❯ perl bin/parse_bam-flag.pl 339 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# each segment properly aligned according to the aligner, i.e., read mapped in proper pair (0x2) -# SEQ being reverse complemented, i.e., read reverse strand (0x10) -# the first segment in the template, i.e., first in pair (0x40) -# secondary alignment, i.e., not primary alignment (0x100) -# -# ❯ perl bin/parse_bam-flag.pl 77 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# segment unmapped, i.e., read unmapped (0x4) -# next segment in the template unmapped, i.e., mate unmapped (0x8) -# the first segment in the template, i.e., first in pair (0x40) -# -# ❯ perl bin/parse_bam-flag.pl 141 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# segment unmapped, i.e., read unmapped (0x4) -# next segment in the template unmapped, i.e., mate unmapped (0x8) -# the last segment in the template, i.e., second in pair (0x80) -# -# ❯ perl bin/parse_bam-flag.pl 403 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# each segment properly aligned according to the aligner, i.e., read mapped in proper pair (0x2) -# SEQ being reverse complemented, i.e., read reverse strand (0x10) -# the last segment in the template, i.e., second in pair (0x80) -# secondary alignment, i.e., not primary alignment (0x100) -# -# ❯ perl bin/parse_bam-flag.pl 355 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# each segment properly aligned according to the aligner, i.e., read mapped in proper pair (0x2) -# SEQ of the next segment in the template being reversed, i.e., mate reverse strand (0x20) -# the first segment in the template, i.e., first in pair (0x40) -# secondary alignment, i.e., not primary alignment (0x100) -# -# ❯ perl bin/parse_bam-flag.pl 89 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# next segment in the template unmapped, i.e., mate unmapped (0x8) -# SEQ being reverse complemented, i.e., read reverse strand (0x10) -# the first segment in the template, i.e., first in pair (0x40) -# -# ❯ perl bin/parse_bam-flag.pl 165 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# segment unmapped, i.e., read unmapped (0x4) -# SEQ of the next segment in the template being reversed, i.e., mate reverse strand (0x20) -# the last segment in the template, i.e., second in pair (0x80) -# -# ❯ perl bin/parse_bam-flag.pl 133 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# segment unmapped, i.e., read unmapped (0x4) -# the last segment in the template, i.e., second in pair (0x80) -# -# ❯ perl bin/parse_bam-flag.pl 73 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# next segment in the template unmapped, i.e., mate unmapped (0x8) -# the first segment in the template, i.e., first in pair (0x40) -# -# ❯ perl bin/parse_bam-flag.pl 345 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# next segment in the template unmapped, i.e., mate unmapped (0x8) -# SEQ being reverse complemented, i.e., read reverse strand (0x10) -# the first segment in the template, i.e., first in pair (0x40) -# secondary alignment, i.e., not primary alignment (0x100) -# -# ❯ perl bin/parse_bam-flag.pl 329 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# next segment in the template unmapped, i.e., mate unmapped (0x8) -# the first segment in the template, i.e., first in pair (0x40) -# secondary alignment, i.e., not primary alignment (0x100) -# -# ❯ perl bin/parse_bam-flag.pl 409 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# next segment in the template unmapped, i.e., mate unmapped (0x8) -# SEQ being reverse complemented, i.e., read reverse strand (0x10) -# the last segment in the template, i.e., second in pair (0x80) -# secondary alignment, i.e., not primary alignment (0x100) -# -# ❯ perl bin/parse_bam-flag.pl 153 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# next segment in the template unmapped, i.e., mate unmapped (0x8) -# SEQ being reverse complemented, i.e., read reverse strand (0x10) -# the last segment in the template, i.e., second in pair (0x80) -# -# ❯ perl bin/parse_bam-flag.pl 101 -# template having multiple segments in sequencing, i.e., read paired (0x1) -# segment unmapped, i.e., read unmapped (0x4) -# SEQ of the next segment in the template being reversed, i.e., mate reverse strand (0x20) -# the first segment in the template, i.e., first in pair (0x40) -