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rough-draft_run-analyses_rlog-PCA_write-rds.notes.txt
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# rough-draft_run-analyses_rlog-PCA_write_rds.notes.txt
# KA
I. Type: WT, G1 vs. Q, mRNA, Ovation
A. Size factors
1. Calculated with S. cerevisiae features
- WT_G1_N_rep1_tech1 0.9702862
- WT_G1_N_rep2_tech1 1.1298402
- WT_G1_SS_rep1_tech1 0.5122146
- WT_G1_SS_rep2_tech1 0.6940191
- WT_Q_N_rep1_tech1 3.1905848
- WT_Q_N_rep2_tech1 3.1597830
- WT_Q_SS_rep1_tech1 0.4368478
- WT_Q_SS_rep2_tech1 0.4248923
2. Calculated with K. lactis features
- WT_G1_N_rep1_tech1 0.3647831
- WT_G1_N_rep2_tech1 0.7238052
- WT_G1_SS_rep1_tech1 0.4122858
- WT_G1_SS_rep2_tech1 0.6866118
- WT_Q_N_rep1_tech1 10.5357476
- WT_Q_N_rep2_tech1 7.3765919
- WT_Q_SS_rep1_tech1 0.3931323
- WT_Q_SS_rep2_tech1 0.4889416
B. Reciprocals of size factors
1. Calculated with S. cerevisiae features
- WT_G1_N_rep1_tech1 1.0306237
- WT_G1_N_rep2_tech1 0.8850809
- WT_G1_SS_rep1_tech1 1.9523067
- WT_G1_SS_rep2_tech1 1.4408825
- WT_Q_N_rep1_tech1 0.3134222
- WT_Q_N_rep2_tech1 0.3164774
- WT_Q_SS_rep1_tech1 2.2891270
- WT_Q_SS_rep2_tech1 2.3535374
2. Calculated with K. lactis features
- WT_G1_N_rep1_tech1 2.74135516
- WT_G1_N_rep2_tech1 1.38158721
- WT_G1_SS_rep1_tech1 2.42550188
- WT_G1_SS_rep2_tech1 1.45642713
- WT_Q_N_rep1_tech1 0.09491495
- WT_Q_N_rep2_tech1 0.13556396
- WT_Q_SS_rep1_tech1 2.54367306
- WT_Q_SS_rep2_tech1 2.04523409
II. Type: timecourse, WT vs. Rrp6∆, mRNA, Tecan
A. Size factors
1. Calculated with K. lactis features
- WT_DSm2_rep1_tech1 0.5682074
- WT_DSm2_rep2_tech1 0.4368905
- WT_DSp2_rep1_tech1 0.8104658
- WT_DSp2_rep2_tech1 0.8467238
- WT_DSp24_rep1_tech1 1.2374142
- WT_DSp24_rep2_tech1 1.2660357
- WT_DSp48_rep1_tech1 1.6936618
- WT_DSp48_rep1_tech2 1.7414215
- WT_DSp48_rep2_tech1 1.2492546
- r6n_DSm2_rep1_tech1 0.6313840
- r6n_DSm2_rep2_tech1 0.7714148
- r6n_DSp2_rep1_tech1 0.9944856
- r6n_DSp2_rep2_tech1 1.0158238
- r6n_DSp24_rep1_tech1 0.8680379
- r6n_DSp24_rep2_tech1 1.2141282
- r6n_DSp48_rep1_tech1 1.4169173
- r6n_DSp48_rep2_tech2 1.4839146
B. Reciprocals of size factors
1. Calculated with K. lactis features
- WT_DSm2_rep1_tech1 1.7599208
- WT_DSm2_rep2_tech1 2.2889032
- WT_DSp2_rep1_tech1 1.2338584
- WT_DSp2_rep2_tech1 1.1810227
- WT_DSp24_rep1_tech1 0.8081369
- WT_DSp24_rep2_tech1 0.7898672
- WT_DSp48_rep1_tech1 0.5904367
- WT_DSp48_rep1_tech2 0.5742435
- WT_DSp48_rep2_tech1 0.8004773
- r6n_DSm2_rep1_tech1 1.5838222
- r6n_DSm2_rep2_tech1 1.2963194
- r6n_DSp2_rep1_tech1 1.0055450
- r6n_DSp2_rep2_tech1 0.9844227
- r6n_DSp24_rep1_tech1 1.1520234
- r6n_DSp24_rep2_tech1 0.8236362
- r6n_DSp48_rep1_tech1 0.7057575
- r6n_DSp48_rep2_tech2 0.6738932