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rough-draft_run-analyses_rlog-PCA_write-rds.notes-2.txt
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# "Rrp6∆.G1-Q.N-SS" --------------------------------------
"r6n_G1_SS_rep1_tech2"
"r6n_G1_SS_rep2_tech2"
"r6n_Q_N_rep1_tech1"
"r6n_Q_N_rep2_tech1"
"r6n_Q_SS_rep1_tech1"
"r6n_Q_SS_rep2_tech1"
"r6n_Q_SS_rep2_tech2"
"WT_G1_SS_rep1_tech2"
"WT_G1_SS_rep2_tech2"
"WT_Q_N_rep1_tech1"
"WT_Q_N_rep2_tech1"
"WT_Q_SS_rep1_tech1"
"WT_Q_SS_rep2_tech1"
# "Rrp6∆.G1-Q.SS" ----------------------------------------
"r6n_G1_SS_rep1_tech2"
"r6n_G1_SS_rep2_tech2"
"r6n_Q_SS_rep1_tech1"
"r6n_Q_SS_rep2_tech1"
"r6n_Q_SS_rep2_tech2"
"WT_G1_SS_rep1_tech2"
"WT_G1_SS_rep2_tech2"
"WT_Q_SS_rep1_tech1"
"WT_Q_SS_rep2_tech1"
# "Rrp6∆.Q.N-SS" -----------------------------------------
"r6n_Q_N_rep1_tech1"
"r6n_Q_N_rep2_tech1"
"r6n_Q_SS_rep1_tech1"
"r6n_Q_SS_rep2_tech1"
"r6n_Q_SS_rep2_tech2"
"WT_Q_N_rep1_tech1"
"WT_Q_N_rep2_tech1"
"WT_Q_SS_rep1_tech1"
"WT_Q_SS_rep2_tech1"
# "Rrp6∆.timecourse" -------------------------------------
"r6n_DSm2_SS_rep1_tech1"
"r6n_DSm2_SS_rep2_tech1"
"r6n_DSp2_SS_rep1_tech1"
"r6n_DSp2_SS_rep2_tech1"
"r6n_DSp24_SS_rep1_tech1"
"r6n_DSp24_SS_rep2_tech1"
"r6n_DSp48_SS_rep1_tech2"
"r6n_DSp48_SS_rep2_tech1"
"WT_DSm2_SS_rep1_tech1"
"WT_DSm2_SS_rep2_tech1"
"WT_DSp2_SS_rep1_tech1"
"WT_DSp2_SS_rep2_tech1"
"WT_DSp24_SS_rep1_tech1"
"WT_DSp24_SS_rep2_tech1"
"WT_DSp48_SS_rep1_tech1"
"WT_DSp48_SS_rep1_tech2"
"WT_DSp48_SS_rep2_tech1"
# "Rrp6∆.timecourse-G1-Q.SS" -----------------------------
"r6n_G1_SS_rep1_tech2"
"r6n_G1_SS_rep2_tech2"
"r6n_Q_SS_rep1_tech1"
"r6n_Q_SS_rep2_tech1"
"r6n_Q_SS_rep2_tech2"
"r6n_DSm2_SS_rep1_tech1"
"r6n_DSm2_SS_rep2_tech1"
"r6n_DSp2_SS_rep1_tech1"
"r6n_DSp2_SS_rep2_tech1"
"r6n_DSp24_SS_rep1_tech1"
"r6n_DSp24_SS_rep2_tech1"
"r6n_DSp48_SS_rep1_tech2"
"r6n_DSp48_SS_rep2_tech1"
"WT_G1_SS_rep1_tech2"
"WT_G1_SS_rep2_tech2"
"WT_Q_SS_rep1_tech1"
"WT_Q_SS_rep2_tech1"
"WT_DSm2_SS_rep1_tech1"
"WT_DSm2_SS_rep2_tech1"
"WT_DSp2_SS_rep1_tech1"
"WT_DSp2_SS_rep2_tech1"
"WT_DSp24_SS_rep1_tech1"
"WT_DSp24_SS_rep2_tech1"
"WT_DSp48_SS_rep1_tech1"
"WT_DSp48_SS_rep1_tech2"
"WT_DSp48_SS_rep2_tech1"
# "Nab3AID.Q.N-SS" ---------------------------------------
"n3d_Q_N_rep1_tech1"
"n3d_Q_N_rep2_tech1"
"n3d_Q_SS_rep1_tech1"
"n3d_Q_SS_rep2_tech1"
"od_Q_N_rep1_tech1"
"od_Q_N_rep2_tech1"
"od_Q_SS_rep1_tech1"
"od_Q_SS_rep2_tech1"
# "Nab3AID.Q.N-SS_Rrp6∆.Q.N-SS" --------------------------
"n3d_Q_N_rep1_tech1"
"n3d_Q_N_rep2_tech1"
"n3d_Q_SS_rep1_tech1"
"n3d_Q_SS_rep2_tech1"
"od_Q_N_rep1_tech1"
"od_Q_N_rep2_tech1"
"od_Q_SS_rep1_tech1"
"od_Q_SS_rep2_tech1"
"r6n_Q_N_rep1_tech1"
"r6n_Q_N_rep2_tech1"
"r6n_Q_SS_rep1_tech1"
"r6n_Q_SS_rep2_tech1"
"r6n_Q_SS_rep2_tech2"
"WT_Q_N_rep1_tech1"
"WT_Q_N_rep2_tech1"
"WT_Q_SS_rep1_tech1"
"WT_Q_SS_rep2_tech1"
# "Nab3AID.Q.N-SS_Rrp6∆.timecourse-G1-Q.N-SS" --------------------------
"n3d_Q_N_rep1_tech1"
"n3d_Q_N_rep2_tech1"
"n3d_Q_SS_rep1_tech1"
"n3d_Q_SS_rep2_tech1"
"r6n_DSm2_SS_rep1_tech1"
"r6n_DSm2_SS_rep2_tech1"
"r6n_DSp2_SS_rep1_tech1"
"r6n_DSp2_SS_rep2_tech1"
"r6n_DSp24_SS_rep1_tech1"
"r6n_DSp24_SS_rep2_tech1"
"r6n_DSp48_SS_rep1_tech2"
"r6n_DSp48_SS_rep2_tech1"
"r6n_G1_SS_rep1_tech2"
"r6n_G1_SS_rep2_tech2"
"r6n_Q_N_rep1_tech1"
"r6n_Q_N_rep2_tech1"
"r6n_Q_SS_rep1_tech1"
"r6n_Q_SS_rep2_tech1"
"r6n_Q_SS_rep2_tech2"
"od_Q_N_rep1_tech1"
"od_Q_N_rep2_tech1"
"od_Q_SS_rep1_tech1"
"od_Q_SS_rep2_tech1"
"WT_DSm2_SS_rep1_tech1"
"WT_DSm2_SS_rep2_tech1"
"WT_DSp2_SS_rep1_tech1"
"WT_DSp2_SS_rep2_tech1"
"WT_DSp24_SS_rep1_tech1"
"WT_DSp24_SS_rep2_tech1"
"WT_DSp48_SS_rep1_tech1"
"WT_DSp48_SS_rep1_tech2"
"WT_DSp48_SS_rep2_tech1"
"WT_G1_SS_rep1_tech2"
"WT_G1_SS_rep2_tech2"
"WT_Q_N_rep1_tech1"
"WT_Q_N_rep2_tech1"
"WT_Q_SS_rep1_tech1"
"WT_Q_SS_rep2_tech1"
# Logic for additional variables ---------------------------------------------
IF str_detect n3d | od:
day = day7
aux = TRUE
IF str_detect DSm2_ | DSp2_:
day = day2
ELSE IF str_detect DSp24_:
day = day3
ELSE IF str_detect DSp48_:
day = day4
IF str_detect r6n_G1:
day = day1
ELSE IF str_detect r6n_Q:
day = day8
IF str_detect r6n | WT:
aux = FALSE
IF str_detect DS:
tc = TRUE
ELSE
tc = FALSE