From 7e37a0fa6e615f7b2e833d8e811de1326276d4ed Mon Sep 17 00:00:00 2001
From: Yujin Kim <37772661+randrover@users.noreply.github.com>
Date: Sun, 30 Jun 2024 16:36:42 +0900
Subject: [PATCH 1/3] Update index.rst

---
 docs/index.rst | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/index.rst b/docs/index.rst
index 2326359..3921dff 100644
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -13,7 +13,7 @@ Here are the reference papers:
 
 * `An analytical framework for whole genome sequence association studies and its implications for autism spectrum disorder <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961723/>`_ (Werling et al., 2018)
 * `Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6432922/>`_ (An et al., 2018)
-* `CWAS-Plus: Estimating category-wide association of rare noncoding variation from whole-genome sequencing data with cell-type-specific functional data <https://www.medrxiv.org/content/10.1101/2024.04.15.24305828v1>` (Kim et al., in press)
+* `CWAS-Plus: Estimating category-wide association of rare noncoding variation from whole-genome sequencing data with cell-type-specific functional data <https://www.medrxiv.org/content/10.1101/2024.04.15.24305828v1>`_ (Kim et al., in press)
 
 
 CWAS-Plus workflow

From ae0837b6317cb982a25cea44a3d53533b3fddfb7 Mon Sep 17 00:00:00 2001
From: Yujin Kim <37772661+randrover@users.noreply.github.com>
Date: Sun, 30 Jun 2024 16:37:15 +0900
Subject: [PATCH 2/3] Update faq.rst

---
 docs/faq/faq.rst | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/faq/faq.rst b/docs/faq/faq.rst
index bffdce5..9077e5e 100644
--- a/docs/faq/faq.rst
+++ b/docs/faq/faq.rst
@@ -14,7 +14,7 @@ For LOFTEE plugin, the installation location for cpanm, perl, and VEP should be
 
 To install VEP version 110, users can use the following command. If users want to install other versions, users can modify the number `110` to their desired specific version.
 
-(The provided commands are referenced from `VEP document <https://asia.ensembl.org/info/docs/tools/vep/script/vep_download.html>`.)
+(The provided commands are referenced from `VEP document <https://asia.ensembl.org/info/docs/tools/vep/script/vep_download.html>`_.)
 
 .. code-block:: solidity
   

From 301c1f21f97c90338a01c268f06915a2996685a6 Mon Sep 17 00:00:00 2001
From: Yujin Kim <37772661+randrover@users.noreply.github.com>
Date: Sun, 30 Jun 2024 16:38:03 +0900
Subject: [PATCH 3/3] Update faq.rst

---
 docs/faq/faq.rst | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/faq/faq.rst b/docs/faq/faq.rst
index 9077e5e..8083bb5 100644
--- a/docs/faq/faq.rst
+++ b/docs/faq/faq.rst
@@ -12,7 +12,7 @@ For easy installation of VEP, we provide the following commands for installation
 
 For LOFTEE plugin, the installation location for cpanm, perl, and VEP should be the same. For example, for conda, all tools should be located under the same conda environment for VEP to locate other tools.
 
-To install VEP version 110, users can use the following command. If users want to install other versions, users can modify the number `110` to their desired specific version.
+To install VEP version 110, users can use the following command. If users want to install other versions, users can modify the number **110** to their desired specific version.
 
 (The provided commands are referenced from `VEP document <https://asia.ensembl.org/info/docs/tools/vep/script/vep_download.html>`_.)