manifest.json

{
	"name": "wbhi-redcap",
	"label": "WBHI REDCap Gear",
	"description": "Queries REDCap using DICOM metadata on Flywheel to find scans matching consenting participants.",
	"version": "1.0.5",
	"author": "Joe Wexler",
	"maintainer": "Joe Wexler",
	"cite": "",
	"license": "MIT",
	"url": "",
	"source": "",
	"environment": {
		"FLYWHEEL": "/flywheel/v0",
		"PWD": "/flywheel/v0",
		"HOME": "/root",
		"LANG": "C.UTF-8",
		"LC_ALL": "C.UTF-8",
		"PATH": "/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin"
	},
	"custom": {
		"gear-builder": {
			"category": "analysis",
			"image": "jbwexler/wbhi-redcap:1.0.5"
		},
		"flywheel": {
			"suite": "WBHI"
		}
	},
	"inputs": {
		"key": {
			"base": "api-key"
		},
		"match_csv": {
			"description": "A csv file to manually match redcap records to flywheel subject. If included, will skip automatic matching and pi-copy. Should contain no header and three columns: 1) site, 2) redcap rid, 3) subject label",
			"base": "file",
			"type": {
				"enum": [
					"text"
				]
			},
			"optional": true
		}
	},
	"config": {
		"redcap_api_key": {
			"description": "REDCap API key",
			"type": "string"
		},
		"ignore_until_n_days_old": {
			"description": "Ignore sessions that are less than n days old. Default = 1 day.",
			"type": "integer",
			"default": 1
		}
	},
	"command": "python run.py"
}