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Phenotype specification #34

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opain opened this issue Dec 9, 2024 · 0 comments
Open

Phenotype specification #34

opain opened this issue Dec 9, 2024 · 0 comments

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@opain
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opain commented Dec 9, 2024

Hello,

Thank you for creating this great tool!

Could clarify how to specify phenotype parameters?

  1. How do you generate continuous phenotypes? If I remove Prevalence from the config file, then I get an error. Do I need to write NA or something for the phenotypes that I want to be continuous?
  2. In the README, some of the parameters require a 'Flatten nPop * nTrait matrix' (such as PropotionGeno). However, this results in an error saying the length is incorrect. If this parameter is length nTrait, then it works. For example the below works:
nPopulation: 3
nTrait: 9
PropotionGeno: 0.03,0.1,0.5,0.03,0.1,0.5,0.03,0.1,0.5

Can you clarify how to set these parameters? More example with other scenarios would be really helpful for understanding how it works.

Many thanks,

Ollie

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