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@@ -35,6 +35,7 @@ The resulting .dcd files containing beads coordinates were then imported in Pyth
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## Simulated data
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The directory **simulated_data_subsample** contains the coordinates of 2 anchors (beads #275 and #324) encompassing a loop of 150kb. In **simulated_data_subsample/Free**, the polymer chain was free (no loop), while the polymer was submitted to loop extrusion in **simulated_data_subsample/Loop**. In simulations with extrusion, the polymer chain was simulated such as it went through 3 different states : i) Open state (absence of loops) ii) Extruding state where the loop size increases with time (anchor-anchor distance decreases) and iii) closed state corresponding to a stable loop with the two anchors in contact.
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In each .txt file, the first three columns correspond to the XYZ coordinates of the anchor, the fourth column indicates the state label (0=Open, 1=Extruding, 2=Closed). Each row corresponds to a simulation timepoint (2991 timepoints in polymers submitted to loop extrusion). The simulation ID is indicated at the end of each .txt file.
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Only 19 samples were provided here. The full dataset is available at : 10.5281/zenodo.7521386.
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