From a7aa8ca7ce4b3415390935e4b8ab487d51cff3e2 Mon Sep 17 00:00:00 2001
From: Likhitha Surapaneni
 <10923198+likhitha-surapaneni@users.noreply.github.com>
Date: Tue, 2 Jun 2026 11:29:35 +0100
Subject: [PATCH] Restructuring website sql script

---
 sql/igsr_website.sql | 103 -------------------------------------------
 1 file changed, 103 deletions(-)
 delete mode 100644 sql/igsr_website.sql

diff --git a/sql/igsr_website.sql b/sql/igsr_website.sql
deleted file mode 100644
index bcd6db1..0000000
--- a/sql/igsr_website.sql
+++ /dev/null
@@ -1,103 +0,0 @@
-CREATE TABLE sample (
-  sample_id INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
-  name CHAR(16) NOT NULL,
-  biosample_id CHAR(12),
-  population_id INT UNSIGNED,
-  sex CHAR(1),
-  UNIQUE (name)
-);
-
-CREATE TABLE superpopulation (
-  superpopulation_id INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
-  code CHAR(3) NOT NULL,
-  name VARCHAR(255),
-  UNIQUE (code)
-);
-
-CREATE TABLE population (
-  population_id INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
-  superpopulation_id INT UNSIGNED,
-  code CHAR(3) NOT NULL,
-  name VARCHAR(255),
-  description VARCHAR(255),
-  UNIQUE (code),
-  CONSTRAINT FOREIGN KEY (superpopulation_id) references superpopulation(superpopulation_id)
-);
-
-CREATE TABLE data_collection (
-  data_collection_id INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
-  code VARCHAR(255) NOT NULL,
-  title VARCHAR(256) NOT NULL,
-  short_title VARCHAR(256) NOT NULL,
-  display_order TINYINT UNSIGNED,
-  reuse_policy VARCHAR(256),
-  reuse_policy_precedence TINYINT UNSIGNED,
-  website VARCHAR(256),
-  publication VARCHAR(256),
-  UNIQUE(code)
-);
-
-CREATE TABLE analysis_group (
-  analysis_group_id INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
-  code VARCHAR(255) NOT NULL,
-  description VARCHAR(256) NOT NULL,
-  short_title VARCHAR(255) NOT NULL,
-  table_display_order TINYINT UNSIGNED,
-  UNIQUE(code)
-);
-
-CREATE TABLE data_type (
-  data_type_id INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
-  code VARCHAR(255) NOT NULL,
-  UNIQUE(code)
-);
-
-CREATE TABLE file (
-  file_id INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
-  url VARCHAR(256) NOT NULL,
-  url_crc INT UNSIGNED NOT NULL,
-  md5 VARCHAR(32),
-  data_type_id INT UNSIGNED,
-  analysis_group_id INT UNSIGNED,
-  foreign_file TINYINT(1),
-  in_current_tree TINYINT(1),
-  indexed_in_elasticsearch TINYINT(1),
-  UNIQUE(url_crc, url),
-  CONSTRAINT FOREIGN KEY (data_type_id) references data_type(data_type_id),
-  CONSTRAINT FOREIGN KEY (analysis_group_id) references analysis_group(analysis_group_id)
-);
-
-CREATE TABLE sample_synonym (
-  sample_id INT UNSIGNED NOT NULL,
-  synonym VARCHAR(255) NOT NULL
-);
-
-CREATE TABLE sample_relationship (
-  subject_sample_id INT UNSIGNED NOT NULL,
-  relation_sample_id INT UNSIGNED NOT NULL,
-  type VARCHAR(255) NOT NULL,
-  UNIQUE (subject_sample_id,relation_sample_id)
-);
-
-CREATE TABLE sample_file (
-  sample_id INT UNSIGNED NOT NULL,
-  file_id INT UNSIGNED NOT NULL,
-  UNIQUE (sample_id,file_id),
-  CONSTRAINT FOREIGN KEY (sample_id) references sample(sample_id),
-  CONSTRAINT FOREIGN KEY (file_id) references file(file_id)
-);
-
-CREATE TABLE file_data_collection (
-  file_id INT UNSIGNED NOT NULL,
-  data_collection_id INT UNSIGNED NOT NULL,
-  UNIQUE (data_collection_id,file_id),
-  CONSTRAINT FOREIGN KEY (data_collection_id) references data_collection(data_collection_id),
-  CONSTRAINT FOREIGN KEY (file_id) references file(file_id)
-);
-
-CREATE TABLE current_tree_log (
-  current_tree_log_id INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
-  current_tree_mtime TIMESTAMP,
-  loaded_into_db TIMESTAMP,
-  loaded_into_elasticsearch TIMESTAMP
-);