diff --git a/README.md b/README.md index 3f04111..3e59d4d 100644 --- a/README.md +++ b/README.md @@ -26,10 +26,10 @@ class fMRI_Prep_Job: fmri_work="/share/fmri_work" # freesurfer_license freesurfer_license = "/share/user_data/public/fanq_ocd/license.txt" - # contianer id fmriprep - contianer_id = "d7235efbbd3c" + # image id fmriprep + image_id = "d7235efbbd3c" # fmriprep cmd - cmd ="docker run -it --rm -v {bids_data_path}:/data -v {freesurfer_license}:/opt/freesurfer/license.txt -v {bids_output_path}:/out -v {fmri_work}:/work {contianer_id} /data /out --skip_bids_validation --ignore slicetiming fieldmaps -w /work --omp-nthreads {thread} --fs-no-reconall --resource-monitor participant --participant-label {subject_ids}" + cmd ="docker run -it --rm -v {bids_data_path}:/data -v {freesurfer_license}:/opt/freesurfer/license.txt -v {bids_output_path}:/out -v {fmri_work}:/work {image_id} /data /out --skip_bids_validation --ignore slicetiming fieldmaps -w /work --omp-nthreads {thread} --fs-no-reconall --resource-monitor participant --participant-label {subject_ids}" ``` ## 2. fmriprep post preocess 这一步的操作主要依赖于`fmribrant`,主要作用是回归掉白质信号、脑脊液信号、全脑信号、头动信息、并进行滤波(可选),将其处理后的文件放存在`prcoessed/post-precoss/fliter/clean_imgs`中,``可选表示是否进行滤波。该配置中不建议修改`dataset_path`,`store_path`