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KaimingTaohivdb-bot
KaimingTao
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hivdb-bot
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add Branche23b, resolve #923 (#1012)
* add Branche23b, resolve #923 * update branche23b-inf * Autogenerated data updated by HIVDB Bot --------- Co-authored-by: HIVDB Bot <[email protected]>
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11 files changed

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‎tables/articles.csv‎

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@@ -806,3 +806,4 @@ Faraone23,10.1016/j.celrep.2023.113193,NULL,"Faraone, JN",2023,2023-12-12,NULL
806806
Song23,10.1101/2023.04.26.538488,NULL,"Song, G",2023,2023-12-12,NULL
807807
Ito23,10.1038/s41467-023-38188-z,NULL,"Ito, J",2023,2023-12-13,NULL
808808
Faraone23b,10.1016/j.xcrm.2023.101049,NULL,"Faraone, JN",2023,2023-12-13,NULL
809+
Branche23b,10.1038/s41591-023-02503-4,NULL,"Branche, AR",2023,2023-12-14,NULL

‎tables/ref_isolate_pairs/branche23b-pair.csv‎

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@@ -0,0 +1,12 @@
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ref_name,control_iso_name,iso_name
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Branche23b,S:614G,BA.1 Spike
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Branche23b,S:614G,BA.2.12.1 Spike
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Branche23b,S:614G,BA.4/5 Spike
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Branche23b,S:614G,B.1.351 Spike
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Branche23b,S:614G,B.1.617.2 Spike
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Branche23b,S:614G,BA.2.75 Spike
8+
Branche23b,S:614G,BA.4.6 Spike
9+
Branche23b,S:614G,BF.7 Spike
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Branche23b,S:614G,BA.2.75.2 Spike
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Branche23b,S:614G,BQ.1.1 Spike
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Branche23b,S:614G,XBB.1 Spike

‎tables/rx_potency/branche23b-pot.csv‎

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‎tables/subject_infections/branche23b-inf.csv‎

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@@ -0,0 +1,15 @@
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ref_name,subject_name,infection_date_cmp,infection_date,infected_var_name,location,immune_status,severity,section
2+
Branche23b,Moderna_inf_prototype,~,2021-01-16,Unknown variant,USA,NULL,NULL,Table 1
3+
Branche23b,Moderna_inf_Beta_BA_1,~,2021-08-29,Unknown variant,USA,NULL,NULL,Table 1
4+
Branche23b,Moderna_inf_Delta_BA_1,~,2021-09-30,Unknown variant,USA,NULL,NULL,Table 1
5+
Branche23b,Moderna_inf_BA_1,~,2020-12-29,Unknown variant,USA,NULL,NULL,Table 1
6+
Branche23b,Moderna_inf_prototype_BA_1,~,2021-09-05,Unknown variant,USA,NULL,NULL,Table 1
7+
Branche23b,BNT_inf_prototype,~,2021-12-08,Unknown variant,USA,NULL,NULL,Table 1
8+
Branche23b,BNT_inf_Beta_BA_1,~,2021-09-23,Unknown variant,USA,NULL,NULL,Table 1
9+
Branche23b,BNT_inf_BA_1,~,2021-12-15,Unknown variant,USA,NULL,NULL,Table 1
10+
Branche23b,BNT_inf_Beta,~,2021-12-22,Unknown variant,USA,NULL,NULL,Table 1
11+
Branche23b,BNT_inf_prototype_Beta,~,2022-01-06,Unknown variant,USA,NULL,NULL,Table 1
12+
Branche23b,BNT_inf_prototype_BA_1,~,2022-01-06,Unknown variant,USA,NULL,NULL,Table 1
13+
Branche23b,Sanofi_inf_prototype,~,2022-01-12,Unknown variant,USA,NULL,NULL,Table 1
14+
Branche23b,Sanofi_inf_Beta,~,2021-11-18,Unknown variant,USA,NULL,NULL,Table 1
15+
Branche23b,Sanofi_inf_prototype_Beta,~,2022-01-16,Unknown variant,USA,NULL,NULL,Table 1

‎tables/subject_plasma/branche23b-plasma.csv‎

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ref_name,subject_name,rx_name,collection_date_cmp,collection_date,location,cumulative_group,section
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Branche23b,Moderna_uninf_prototype,Moderna_uninf_prototype_D1,~,2022-05-07,USA,Moderna_uninf_prototype,NULL
3+
Branche23b,Moderna_uninf_prototype,Moderna_uninf_prototype_D15,~,2022-05-21,USA,Moderna_uninf_prototype,NULL
4+
Branche23b,Moderna_uninf_prototype,Moderna_uninf_prototype_D29,~,2022-06-04,USA,Moderna_uninf_prototype,NULL
5+
Branche23b,Moderna_uninf_prototype,Moderna_uninf_prototype_D91,~,2022-08-05,USA,Moderna_uninf_prototype,NULL
6+
Branche23b,Moderna_uninf_Beta_BA_1,Moderna_uninf_Beta_BA_1_D1,~,2022-05-07,USA,Moderna_uninf_Beta_BA_1,NULL
7+
Branche23b,Moderna_uninf_Beta_BA_1,Moderna_uninf_Beta_BA_1_D15,~,2022-05-21,USA,Moderna_uninf_Beta_BA_1,NULL
8+
Branche23b,Moderna_uninf_Beta_BA_1,Moderna_uninf_Beta_BA_1_D29,~,2022-06-04,USA,Moderna_uninf_Beta_BA_1,NULL
9+
Branche23b,Moderna_uninf_Beta_BA_1,Moderna_uninf_Beta_BA_1_D91,~,2022-08-05,USA,Moderna_uninf_Beta_BA_1,NULL
10+
Branche23b,Moderna_uninf_Delta_BA_1,Moderna_uninf_Delta_BA_1_D1,~,2022-05-07,USA,Moderna_uninf_Delta_BA_1,NULL
11+
Branche23b,Moderna_uninf_Delta_BA_1,Moderna_uninf_Delta_BA_1_D15,~,2022-05-21,USA,Moderna_uninf_Delta_BA_1,NULL
12+
Branche23b,Moderna_uninf_Delta_BA_1,Moderna_uninf_Delta_BA_1_D29,~,2022-06-04,USA,Moderna_uninf_Delta_BA_1,NULL
13+
Branche23b,Moderna_uninf_Delta_BA_1,Moderna_uninf_Delta_BA_1_D91,~,2022-08-05,USA,Moderna_uninf_Delta_BA_1,NULL
14+
Branche23b,Moderna_uninf_BA_1,Moderna_uninf_BA_1_D1,~,2022-05-07,USA,Moderna_uninf_BA_1,NULL
15+
Branche23b,Moderna_uninf_BA_1,Moderna_uninf_BA_1_D15,~,2022-05-21,USA,Moderna_uninf_BA_1,NULL
16+
Branche23b,Moderna_uninf_BA_1,Moderna_uninf_BA_1_D29,~,2022-06-04,USA,Moderna_uninf_BA_1,NULL
17+
Branche23b,Moderna_uninf_BA_1,Moderna_uninf_BA_1_D91,~,2022-08-05,USA,Moderna_uninf_BA_1,NULL
18+
Branche23b,Moderna_uninf_prototype_BA_1,Moderna_uninf_prototype_BA_1_D1,~,2022-05-07,USA,Moderna_uninf_prototype_BA_1,NULL
19+
Branche23b,Moderna_uninf_prototype_BA_1,Moderna_uninf_prototype_BA_1_D15,~,2022-05-21,USA,Moderna_uninf_prototype_BA_1,NULL
20+
Branche23b,Moderna_uninf_prototype_BA_1,Moderna_uninf_prototype_BA_1_D29,~,2022-06-04,USA,Moderna_uninf_prototype_BA_1,NULL
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Branche23b,Moderna_uninf_prototype_BA_1,Moderna_uninf_prototype_BA_1_D91,~,2022-08-05,USA,Moderna_uninf_prototype_BA_1,NULL
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Branche23b,Moderna_inf_prototype,Moderna_inf_prototype_D1,~,2022-05-07,USA,Moderna_inf_prototype,NULL
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Branche23b,Moderna_inf_prototype,Moderna_inf_prototype_D15,~,2022-05-21,USA,Moderna_inf_prototype,NULL
24+
Branche23b,Moderna_inf_prototype,Moderna_inf_prototype_D29,~,2022-06-04,USA,Moderna_inf_prototype,NULL
25+
Branche23b,Moderna_inf_prototype,Moderna_inf_prototype_D91,~,2022-08-05,USA,Moderna_inf_prototype,NULL
26+
Branche23b,Moderna_inf_Beta_BA_1,Moderna_inf_Beta_BA_1_D1,~,2022-05-07,USA,Moderna_inf_Beta_BA_1,NULL
27+
Branche23b,Moderna_inf_Beta_BA_1,Moderna_inf_Beta_BA_1_D15,~,2022-05-21,USA,Moderna_inf_Beta_BA_1,NULL
28+
Branche23b,Moderna_inf_Beta_BA_1,Moderna_inf_Beta_BA_1_D29,~,2022-06-04,USA,Moderna_inf_Beta_BA_1,NULL
29+
Branche23b,Moderna_inf_Beta_BA_1,Moderna_inf_Beta_BA_1_D91,~,2022-08-05,USA,Moderna_inf_Beta_BA_1,NULL
30+
Branche23b,Moderna_inf_Delta_BA_1,Moderna_inf_Delta_BA_1_D1,~,2022-05-07,USA,Moderna_inf_Delta_BA_1,NULL
31+
Branche23b,Moderna_inf_Delta_BA_1,Moderna_inf_Delta_BA_1_D15,~,2022-05-21,USA,Moderna_inf_Delta_BA_1,NULL
32+
Branche23b,Moderna_inf_Delta_BA_1,Moderna_inf_Delta_BA_1_D29,~,2022-06-04,USA,Moderna_inf_Delta_BA_1,NULL
33+
Branche23b,Moderna_inf_Delta_BA_1,Moderna_inf_Delta_BA_1_D91,~,2022-08-05,USA,Moderna_inf_Delta_BA_1,NULL
34+
Branche23b,Moderna_inf_BA_1,Moderna_inf_BA_1_D1,~,2022-05-07,USA,Moderna_inf_BA_1,NULL
35+
Branche23b,Moderna_inf_BA_1,Moderna_inf_BA_1_D15,~,2022-05-21,USA,Moderna_inf_BA_1,NULL
36+
Branche23b,Moderna_inf_BA_1,Moderna_inf_BA_1_D29,~,2022-06-04,USA,Moderna_inf_BA_1,NULL
37+
Branche23b,Moderna_inf_BA_1,Moderna_inf_BA_1_D91,~,2022-08-05,USA,Moderna_inf_BA_1,NULL
38+
Branche23b,Moderna_inf_prototype_BA_1,Moderna_inf_prototype_BA_1_D1,~,2022-05-07,USA,Moderna_inf_prototype_BA_1,NULL
39+
Branche23b,Moderna_inf_prototype_BA_1,Moderna_inf_prototype_BA_1_D15,~,2022-05-21,USA,Moderna_inf_prototype_BA_1,NULL
40+
Branche23b,Moderna_inf_prototype_BA_1,Moderna_inf_prototype_BA_1_D29,~,2022-06-04,USA,Moderna_inf_prototype_BA_1,NULL
41+
Branche23b,Moderna_inf_prototype_BA_1,Moderna_inf_prototype_BA_1_D91,~,2022-08-05,USA,Moderna_inf_prototype_BA_1,NULL
42+
Branche23b,BNT_uninf_prototype,BNT_uninf_prototype_D1,~,2022-05-28,USA,BNT_uninf_prototype,NULL
43+
Branche23b,BNT_uninf_prototype,BNT_uninf_prototype_D15,~,2022-06-11,USA,BNT_uninf_prototype,NULL
44+
Branche23b,BNT_uninf_prototype,BNT_uninf_prototype_D29,~,2022-06-25,USA,BNT_uninf_prototype,NULL
45+
Branche23b,BNT_uninf_prototype,BNT_uninf_prototype_D91,~,2022-08-26,USA,BNT_uninf_prototype,NULL
46+
Branche23b,BNT_uninf_Beta_BA_1,BNT_uninf_Beta_BA_1_D1,~,2022-05-28,USA,BNT_uninf_Beta_BA_1,NULL
47+
Branche23b,BNT_uninf_Beta_BA_1,BNT_uninf_Beta_BA_1_D15,~,2022-06-11,USA,BNT_uninf_Beta_BA_1,NULL
48+
Branche23b,BNT_uninf_Beta_BA_1,BNT_uninf_Beta_BA_1_D29,~,2022-06-25,USA,BNT_uninf_Beta_BA_1,NULL
49+
Branche23b,BNT_uninf_Beta_BA_1,BNT_uninf_Beta_BA_1_D91,~,2022-08-26,USA,BNT_uninf_Beta_BA_1,NULL
50+
Branche23b,BNT_uninf_BA_1,BNT_uninf_BA_1_D1,~,2022-05-28,USA,BNT_uninf_BA_1,NULL
51+
Branche23b,BNT_uninf_BA_1,BNT_uninf_BA_1_D15,~,2022-06-11,USA,BNT_uninf_BA_1,NULL
52+
Branche23b,BNT_uninf_BA_1,BNT_uninf_BA_1_D29,~,2022-06-25,USA,BNT_uninf_BA_1,NULL
53+
Branche23b,BNT_uninf_BA_1,BNT_uninf_BA_1_D91,~,2022-08-26,USA,BNT_uninf_BA_1,NULL
54+
Branche23b,BNT_uninf_Beta,BNT_uninf_Beta_D1,~,2022-05-28,USA,BNT_uninf_Beta,NULL
55+
Branche23b,BNT_uninf_Beta,BNT_uninf_Beta_D15,~,2022-06-11,USA,BNT_uninf_Beta,NULL
56+
Branche23b,BNT_uninf_Beta,BNT_uninf_Beta_D29,~,2022-06-25,USA,BNT_uninf_Beta,NULL
57+
Branche23b,BNT_uninf_Beta,BNT_uninf_Beta_D91,~,2022-08-26,USA,BNT_uninf_Beta,NULL
58+
Branche23b,BNT_uninf_prototype_Beta,BNT_uninf_prototype_Beta_D1,~,2022-05-28,USA,BNT_uninf_prototype_Beta,NULL
59+
Branche23b,BNT_uninf_prototype_Beta,BNT_uninf_prototype_Beta_D15,~,2022-06-11,USA,BNT_uninf_prototype_Beta,NULL
60+
Branche23b,BNT_uninf_prototype_Beta,BNT_uninf_prototype_Beta_D29,~,2022-06-25,USA,BNT_uninf_prototype_Beta,NULL
61+
Branche23b,BNT_uninf_prototype_Beta,BNT_uninf_prototype_Beta_D91,~,2022-08-26,USA,BNT_uninf_prototype_Beta,NULL
62+
Branche23b,BNT_uninf_prototype_BA_1,BNT_uninf_prototype_BA_1_D1,~,2022-05-28,USA,BNT_uninf_prototype_BA_1,NULL
63+
Branche23b,BNT_uninf_prototype_BA_1,BNT_uninf_prototype_BA_1_D15,~,2022-06-11,USA,BNT_uninf_prototype_BA_1,NULL
64+
Branche23b,BNT_uninf_prototype_BA_1,BNT_uninf_prototype_BA_1_D29,~,2022-06-25,USA,BNT_uninf_prototype_BA_1,NULL
65+
Branche23b,BNT_uninf_prototype_BA_1,BNT_uninf_prototype_BA_1_D91,~,2022-08-26,USA,BNT_uninf_prototype_BA_1,NULL
66+
Branche23b,BNT_inf_prototype,BNT_inf_prototype_D1,~,2022-05-28,USA,BNT_inf_prototype,NULL
67+
Branche23b,BNT_inf_prototype,BNT_inf_prototype_D15,~,2022-06-11,USA,BNT_inf_prototype,NULL
68+
Branche23b,BNT_inf_prototype,BNT_inf_prototype_D29,~,2022-06-25,USA,BNT_inf_prototype,NULL
69+
Branche23b,BNT_inf_prototype,BNT_inf_prototype_D91,~,2022-08-26,USA,BNT_inf_prototype,NULL
70+
Branche23b,BNT_inf_Beta_BA_1,BNT_inf_Beta_BA_1_D1,~,2022-05-28,USA,BNT_inf_Beta_BA_1,NULL
71+
Branche23b,BNT_inf_Beta_BA_1,BNT_inf_Beta_BA_1_D15,~,2022-06-11,USA,BNT_inf_Beta_BA_1,NULL
72+
Branche23b,BNT_inf_Beta_BA_1,BNT_inf_Beta_BA_1_D29,~,2022-06-25,USA,BNT_inf_Beta_BA_1,NULL
73+
Branche23b,BNT_inf_Beta_BA_1,BNT_inf_Beta_BA_1_D91,~,2022-08-26,USA,BNT_inf_Beta_BA_1,NULL
74+
Branche23b,BNT_inf_BA_1,BNT_inf_BA_1_D1,~,2022-05-28,USA,BNT_inf_BA_1,NULL
75+
Branche23b,BNT_inf_BA_1,BNT_inf_BA_1_D15,~,2022-06-11,USA,BNT_inf_BA_1,NULL
76+
Branche23b,BNT_inf_BA_1,BNT_inf_BA_1_D29,~,2022-06-25,USA,BNT_inf_BA_1,NULL
77+
Branche23b,BNT_inf_BA_1,BNT_inf_BA_1_D91,~,2022-08-26,USA,BNT_inf_BA_1,NULL
78+
Branche23b,BNT_inf_Beta,BNT_inf_Beta_D1,~,2022-05-28,USA,BNT_inf_Beta,NULL
79+
Branche23b,BNT_inf_Beta,BNT_inf_Beta_D15,~,2022-06-11,USA,BNT_inf_Beta,NULL
80+
Branche23b,BNT_inf_Beta,BNT_inf_Beta_D29,~,2022-06-25,USA,BNT_inf_Beta,NULL
81+
Branche23b,BNT_inf_Beta,BNT_inf_Beta_D91,~,2022-08-26,USA,BNT_inf_Beta,NULL
82+
Branche23b,BNT_inf_prototype_Beta,BNT_inf_prototype_Beta_D1,~,2022-05-28,USA,BNT_inf_prototype_Beta,NULL
83+
Branche23b,BNT_inf_prototype_Beta,BNT_inf_prototype_Beta_D15,~,2022-06-11,USA,BNT_inf_prototype_Beta,NULL
84+
Branche23b,BNT_inf_prototype_Beta,BNT_inf_prototype_Beta_D29,~,2022-06-25,USA,BNT_inf_prototype_Beta,NULL
85+
Branche23b,BNT_inf_prototype_Beta,BNT_inf_prototype_Beta_D91,~,2022-08-26,USA,BNT_inf_prototype_Beta,NULL
86+
Branche23b,BNT_inf_prototype_BA_1,BNT_inf_prototype_BA_1_D1,~,2022-05-28,USA,BNT_inf_prototype_BA_1,NULL
87+
Branche23b,BNT_inf_prototype_BA_1,BNT_inf_prototype_BA_1_D15,~,2022-06-11,USA,BNT_inf_prototype_BA_1,NULL
88+
Branche23b,BNT_inf_prototype_BA_1,BNT_inf_prototype_BA_1_D29,~,2022-06-25,USA,BNT_inf_prototype_BA_1,NULL
89+
Branche23b,BNT_inf_prototype_BA_1,BNT_inf_prototype_BA_1_D91,~,2022-08-26,USA,BNT_inf_prototype_BA_1,NULL
90+
Branche23b,Sanofi_uninf_prototype,Sanofi_uninf_prototype_D1,~,2022-06-18,USA,Sanofi_uninf_prototype,NULL
91+
Branche23b,Sanofi_uninf_prototype,Sanofi_uninf_prototype_D29,~,2022-07-16,USA,Sanofi_uninf_prototype,NULL
92+
Branche23b,Sanofi_uninf_prototype,Sanofi_uninf_prototype_D91,~,2022-09-16,USA,Sanofi_uninf_prototype,NULL
93+
Branche23b,Sanofi_uninf_Beta,Sanofi_uninf_Beta_D1,~,2022-06-18,USA,Sanofi_uninf_Beta,NULL
94+
Branche23b,Sanofi_uninf_Beta,Sanofi_uninf_Beta_D29,~,2022-07-16,USA,Sanofi_uninf_Beta,NULL
95+
Branche23b,Sanofi_uninf_Beta,Sanofi_uninf_Beta_D91,~,2022-09-16,USA,Sanofi_uninf_Beta,NULL
96+
Branche23b,Sanofi_uninf_prototype_Beta,Sanofi_uninf_prototype_Beta_D1,~,2022-06-18,USA,Sanofi_uninf_prototype_Beta,NULL
97+
Branche23b,Sanofi_uninf_prototype_Beta,Sanofi_uninf_prototype_Beta_D29,~,2022-07-16,USA,Sanofi_uninf_prototype_Beta,NULL
98+
Branche23b,Sanofi_uninf_prototype_Beta,Sanofi_uninf_prototype_Beta_D91,~,2022-09-16,USA,Sanofi_uninf_prototype_Beta,NULL
99+
Branche23b,Sanofi_inf_prototype,Sanofi_inf_prototype_D1,~,2022-06-18,USA,Sanofi_inf_prototype,NULL
100+
Branche23b,Sanofi_inf_prototype,Sanofi_inf_prototype_D29,~,2022-07-16,USA,Sanofi_inf_prototype,NULL
101+
Branche23b,Sanofi_inf_prototype,Sanofi_inf_prototype_D91,~,2022-09-16,USA,Sanofi_inf_prototype,NULL
102+
Branche23b,Sanofi_inf_Beta,Sanofi_inf_Beta_D1,~,2022-06-18,USA,Sanofi_inf_Beta,NULL
103+
Branche23b,Sanofi_inf_Beta,Sanofi_inf_Beta_D29,~,2022-07-16,USA,Sanofi_inf_Beta,NULL
104+
Branche23b,Sanofi_inf_Beta,Sanofi_inf_Beta_D91,~,2022-09-16,USA,Sanofi_inf_Beta,NULL
105+
Branche23b,Sanofi_inf_prototype_Beta,Sanofi_inf_prototype_Beta_D1,~,2022-06-18,USA,Sanofi_inf_prototype_Beta,NULL
106+
Branche23b,Sanofi_inf_prototype_Beta,Sanofi_inf_prototype_Beta_D29,~,2022-07-16,USA,Sanofi_inf_prototype_Beta,NULL
107+
Branche23b,Sanofi_inf_prototype_Beta,Sanofi_inf_prototype_Beta_D91,~,2022-09-16,USA,Sanofi_inf_prototype_Beta,NULL
108+
Branche23b,Moderna_uninf_prototype,Moderna_uninf_prototype_Day1,~,2022-06-18,USA,Moderna_uninf_prototype,NULL
109+
Branche23b,Moderna_uninf_prototype,Moderna_uninf_prototype_Day15,~,2022-07-16,USA,Moderna_uninf_prototype,NULL
110+
Branche23b,Moderna_uninf_prototype,Moderna_uninf_prototype_Day91,~,2022-09-16,USA,Moderna_uninf_prototype,NULL
111+
Branche23b,Moderna_uninf_prototype_BA_1,Moderna_uninf_prototype_BA_1_Day1,~,2022-06-18,USA,Moderna_uninf_prototype_BA_1,NULL
112+
Branche23b,Moderna_uninf_prototype_BA_1,Moderna_uninf_prototype_BA_1_Day15,~,2022-07-16,USA,Moderna_uninf_prototype_BA_1,NULL
113+
Branche23b,Moderna_uninf_prototype_BA_1,Moderna_uninf_prototype_BA_1_Day29,~,2022-09-16,USA,Moderna_uninf_prototype_BA_1,NULL

‎tables/subject_vaccines/branche23-vacc.csv‎

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -1,13 +1,13 @@
11
ref_name,subject_name,vaccination_date_cmp,vaccination_date,vaccine_name,dosage,location,section
22
Branche23,bivalent_BA1_booster,~,2021-11-06,mRNA-monovalent,3,USA,Table S3
3-
Branche23,bivalent_BA1_booster,~,2022-10-01,BNT_BA.1,4,USA,Table S3
3+
Branche23,bivalent_BA1_booster,~,2022-10-01,BNT162b2_BA.1,4,USA,Table S3
44
Branche23,bivalent_BA4/5_booster,~,2021-11-09,mRNA-monovalent,3,USA,Table S3
5-
Branche23,bivalent_BA4/5_booster,~,2022-10-01,BNT_BA.4/5,4,USA,Table S3
5+
Branche23,bivalent_BA4/5_booster,~,2022-10-01,BNT162b2_BA.4/5,4,USA,Table S3
66
Branche23,infected_bivalent_BA1_booster,~,2021-11-06,mRNA-monovalent,3,USA,Table S3
7-
Branche23,infected_bivalent_BA1_booster,~,2022-10-01,BNT_BA.1,4,USA,Table S3
7+
Branche23,infected_bivalent_BA1_booster,~,2022-10-01,BNT162b2_BA.1,4,USA,Table S3
88
Branche23,infected_bivalent_BA4/5_booster,~,2021-11-09,mRNA-monovalent,3,USA,Table S3
9-
Branche23,infected_bivalent_BA4/5_booster,~,2022-10-01,BNT_BA.4/5,4,USA,Table S3
9+
Branche23,infected_bivalent_BA4/5_booster,~,2022-10-01,BNT162b2_BA.4/5,4,USA,Table S3
1010
Branche23,bivalent_BA1_booster_w_wo_inf,~,2021-11-06,mRNA-monovalent,3,USA,Table S3
11-
Branche23,bivalent_BA1_booster_w_wo_inf,~,2022-10-01,BNT_BA.1,4,USA,Table S3
11+
Branche23,bivalent_BA1_booster_w_wo_inf,~,2022-10-01,BNT162b2_BA.1,4,USA,Table S3
1212
Branche23,bivalent_BA4/5_booster_w_wo_inf,~,2021-11-09,mRNA-monovalent,3,USA,Table S3
13-
Branche23,bivalent_BA4/5_booster_w_wo_inf,~,2022-10-01,BNT_BA.4/5,4,USA,Table S3
13+
Branche23,bivalent_BA4/5_booster_w_wo_inf,~,2022-10-01,BNT162b2_BA.4/5,4,USA,Table S3

‎tables/subject_vaccines/branche23b-vacc.csv‎

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Original file line numberDiff line numberDiff line change
@@ -0,0 +1,29 @@
1+
ref_name,subject_name,vaccination_date_cmp,vaccination_date,vaccine_name,dosage,location,section
2+
Branche23b,Moderna_uninf_prototype,~,2022-05-06,mRNA-1273,4,USA,Table 1
3+
Branche23b,Moderna_uninf_Beta_BA_1,~,2022-05-06,mRNA-1273.351_529_bivalent,4,USA,Table 1
4+
Branche23b,Moderna_uninf_Delta_BA_1,~,2022-05-06,mRNA-1273.617.2_529_bivalent,4,USA,Table 1
5+
Branche23b,Moderna_uninf_BA_1,~,2022-05-06,mRNA-1273.529,4,USA,Table 1
6+
Branche23b,Moderna_uninf_prototype_BA_1,~,2022-05-06,mRNA-1273_WT_529_bivalent,4,USA,Table 1
7+
Branche23b,Moderna_inf_prototype,~,2022-05-06,mRNA-1273,4,USA,Table 1
8+
Branche23b,Moderna_inf_Beta_BA_1,~,2022-05-06,mRNA-1273.351_529_bivalent,4,USA,Table 1
9+
Branche23b,Moderna_inf_Delta_BA_1,~,2022-05-06,mRNA-1273.617.2_529_bivalent,4,USA,Table 1
10+
Branche23b,Moderna_inf_BA_1,~,2022-05-06,mRNA-1273.529,4,USA,Table 1
11+
Branche23b,Moderna_inf_prototype_BA_1,~,2022-05-06,mRNA-1273_WT_529_bivalent,4,USA,Table 1
12+
Branche23b,BNT_uninf_prototype,~,2022-05-27,BNT162b2,4,USA,Table 1
13+
Branche23b,BNT_uninf_Beta_BA_1,~,2022-05-27,BNT162b2_Beta_BA.1_bivalent,4,USA,Table 1
14+
Branche23b,BNT_uninf_BA_1,~,2022-05-27,BNT162b2_BA.1,4,USA,Table 1
15+
Branche23b,BNT_uninf_Beta,~,2022-05-27,BNT162b2_Beta,4,USA,Table 1
16+
Branche23b,BNT_uninf_prototype_Beta,~,2022-05-27,BNT162b2_Beta_bivalent,4,USA,Table 1
17+
Branche23b,BNT_uninf_prototype_BA_1,~,2022-05-27,BNT162b2_BA.1_bivalent,4,USA,Table 1
18+
Branche23b,BNT_inf_prototype,~,2022-05-27,BNT162b2,4,USA,Table 1
19+
Branche23b,BNT_inf_Beta_BA_1,~,2022-05-27,BNT162b2_Beta_BA.1_bivalent,4,USA,Table 1
20+
Branche23b,BNT_inf_BA_1,~,2022-05-27,BNT162b2_BA.1,4,USA,Table 1
21+
Branche23b,BNT_inf_Beta,~,2022-05-27,BNT162b2_Beta,4,USA,Table 1
22+
Branche23b,BNT_inf_prototype_Beta,~,2022-05-27,BNT162b2_Beta_bivalent,4,USA,Table 1
23+
Branche23b,BNT_inf_prototype_BA_1,~,2022-05-27,BNT162b2_BA.1_bivalent,4,USA,Table 1
24+
Branche23b,Sanofi_uninf_prototype,~,2022-06-17,Sanofi_Beta,4,USA,Table 1
25+
Branche23b,Sanofi_uninf_Beta,~,2022-06-17,Sanofi_WT,4,USA,Table 1
26+
Branche23b,Sanofi_uninf_prototype_Beta,~,2022-06-17,Sanofi_WT_Beta_Bivalent,4,USA,Table 1
27+
Branche23b,Sanofi_inf_prototype,~,2022-06-17,Sanofi_Beta,4,USA,Table 1
28+
Branche23b,Sanofi_inf_Beta,~,2022-06-17,Sanofi_WT,4,USA,Table 1
29+
Branche23b,Sanofi_inf_prototype_Beta,~,2022-06-17,Sanofi_WT_Beta_Bivalent,4,USA,Table 1

‎tables/subject_vaccines/muik22c-vacc.csv‎

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Original file line numberDiff line numberDiff line change
@@ -15,10 +15,10 @@ Muik22c,BNT_booster_mice,~,2022-04-22,BNT162b2,2,Germany,Fig 1
1515
Muik22c,BNT_booster_mice,~,2022-07-14,BNT162b2,3,Germany,Fig 1
1616
Muik22c,BA.1_booster_mice,~,2022-04-01,BNT162b2,1,Germany,Fig 1
1717
Muik22c,BA.1_booster_mice,~,2022-04-22,BNT162b2,2,Germany,Fig 1
18-
Muik22c,BA.1_booster_mice,~,2022-07-14,BNT_BA.1,3,Germany,Fig 1
18+
Muik22c,BA.1_booster_mice,~,2022-07-14,BNT162b2_BA.1,3,Germany,Fig 1
1919
Muik22c,BA.4/5_booster_mice,~,2022-04-01,BNT162b2,1,Germany,Fig 1
2020
Muik22c,BA.4/5_booster_mice,~,2022-04-22,BNT162b2,2,Germany,Fig 1
21-
Muik22c,BA.4/5_booster_mice,~,2022-07-14,BNT_BA.4/5,3,Germany,Fig 1
21+
Muik22c,BA.4/5_booster_mice,~,2022-07-14,BNT162b2_BA.4/5,3,Germany,Fig 1
2222
Muik22c,BNT_BA.1_biva_mice,~,2022-04-01,BNT162b2,1,Germany,Fig 1
2323
Muik22c,BNT_BA.1_biva_mice,~,2022-04-22,BNT162b2,2,Germany,Fig 1
2424
Muik22c,BNT_BA.1_biva_mice,~,2022-07-14,BNT162b2_BA.1_bivalent,3,Germany,Fig 1
@@ -27,9 +27,9 @@ Muik22c,BNT_BA.4/5_biva_mice,~,2022-04-22,BNT162b2,2,Germany,Fig 1
2727
Muik22c,BNT_BA.4/5_biva_mice,~,2022-07-14,BNT162b2_BA.4/5_bivalent,3,Germany,Fig 1
2828
Muik22c,BNT_2dose_mice,~,2022-07-01,BNT162b2,1,Germany,Fig 1
2929
Muik22c,BNT_2dose_mice,~,2022-07-22,BNT162b2,2,Germany,Fig 1
30-
Muik22c,BA.1_2dose_mice,~,2022-07-01,BNT_BA.1,1,Germany,Fig 1
31-
Muik22c,BA.1_2dose_mice,~,2022-07-22,BNT_BA.1,2,Germany,Fig 1
32-
Muik22c,BA.4/5_2dose_mice,~,2022-07-01,BNT_BA.4/5,1,Germany,Fig 1
33-
Muik22c,BA.4/5_2dose_mice,~,2022-07-22,BNT_BA.4/5,2,Germany,Fig 1
30+
Muik22c,BA.1_2dose_mice,~,2022-07-01,BNT162b2_BA.1,1,Germany,Fig 1
31+
Muik22c,BA.1_2dose_mice,~,2022-07-22,BNT162b2_BA.1,2,Germany,Fig 1
32+
Muik22c,BA.4/5_2dose_mice,~,2022-07-01,BNT162b2_BA.4/5,1,Germany,Fig 1
33+
Muik22c,BA.4/5_2dose_mice,~,2022-07-22,BNT162b2_BA.4/5,2,Germany,Fig 1
3434
Muik22c,BNT_BA.4/5_2dose_mice,~,2022-07-01,BNT162b2_BA.4/5_bivalent,1,Germany,Fig 1
3535
Muik22c,BNT_BA.4/5_2dose_mice,~,2022-07-22,BNT162b2_BA.4/5_bivalent,2,Germany,Fig 1

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