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KaimingTaoKaimingTao
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fix issues of cp
1 parent f73475c commit cfe9da2

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9 files changed

+186
-188
lines changed

9 files changed

+186
-188
lines changed

‎tables/antibody_targets.csv‎

Lines changed: 135 additions & 137 deletions
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‎tables/rx_plasma/geers21-plasma.csv‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
ref_name,rx_name,subject_name,collection_date,cumulative_group
22
Geers21,BNT_naive_1dose,BNT_naive,2021-01-22,BNT_naive
33
Geers21,BNT_naive_2dose,BNT_naive,2021-02-19,BNT_naive
4-
Geers21,CP_recovered,BNT_recovered,2020-10-02,BNT_recovered
4+
Geers21,CP_recovered,BNT_recovered,2020-10-02,CP_recovered
55
Geers21,BNT_recovered_1dose,BNT_recovered,2021-01-22,BNT_recovered
66
Geers21,BNT_recovered_2dose,BNT_recovered,2021-02-19,BNT_recovered

‎tables/rx_plasma/jalkanen21-plasma.csv‎

Lines changed: 11 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -387,17 +387,17 @@ Jalkanen21,CONV-47,CP,2020-12-31,CP
387387
Jalkanen21,CONV-48,CP,2020-12-31,CP
388388
Jalkanen21,CONV-49,CP,2020-12-31,CP
389389
Jalkanen21,CONV-50,CP,2020-12-31,CP
390-
Jalkanen21,VAC-170_0d,VAC_recovered,2020-12-28,VAC_recovered
391-
Jalkanen21,VAC-171_0d,VAC_recovered,2020-12-28,VAC_recovered
392-
Jalkanen21,VAC-172_0d,VAC_recovered,2020-12-28,VAC_recovered
393-
Jalkanen21,VAC-173_0d,VAC_recovered,2020-12-28,VAC_recovered
394-
Jalkanen21,VAC-174_0d,VAC_recovered,2020-12-28,VAC_recovered
395-
Jalkanen21,VAC-175_0d,VAC_recovered,2020-12-28,VAC_recovered
396-
Jalkanen21,VAC-176_0d,VAC_recovered,2020-12-28,VAC_recovered
397-
Jalkanen21,VAC-177_0d,VAC_recovered,2020-12-28,VAC_recovered
398-
Jalkanen21,VAC-178_0d,VAC_recovered,2020-12-28,VAC_recovered
399-
Jalkanen21,VAC-179_0d,VAC_recovered,2020-12-28,VAC_recovered
400-
Jalkanen21,VAC-180_0d,VAC_recovered,2020-12-28,VAC_recovered
390+
Jalkanen21,VAC-170_0d,VAC_recovered,2020-12-28,CP_VAC_recovered
391+
Jalkanen21,VAC-171_0d,VAC_recovered,2020-12-28,CP_VAC_recovered
392+
Jalkanen21,VAC-172_0d,VAC_recovered,2020-12-28,CP_VAC_recovered
393+
Jalkanen21,VAC-173_0d,VAC_recovered,2020-12-28,CP_VAC_recovered
394+
Jalkanen21,VAC-174_0d,VAC_recovered,2020-12-28,CP_VAC_recovered
395+
Jalkanen21,VAC-175_0d,VAC_recovered,2020-12-28,CP_VAC_recovered
396+
Jalkanen21,VAC-176_0d,VAC_recovered,2020-12-28,CP_VAC_recovered
397+
Jalkanen21,VAC-177_0d,VAC_recovered,2020-12-28,CP_VAC_recovered
398+
Jalkanen21,VAC-178_0d,VAC_recovered,2020-12-28,CP_VAC_recovered
399+
Jalkanen21,VAC-179_0d,VAC_recovered,2020-12-28,CP_VAC_recovered
400+
Jalkanen21,VAC-180_0d,VAC_recovered,2020-12-28,CP_VAC_recovered
401401
Jalkanen21,VAC-170_3wk,VAC_recovered,2021-01-18,VAC_recovered
402402
Jalkanen21,VAC-171_3wk,VAC_recovered,2021-01-18,VAC_recovered
403403
Jalkanen21,VAC-172_3wk,VAC_recovered,2021-01-18,VAC_recovered

‎tables/rx_plasma/turner21-plasma.csv‎

Lines changed: 26 additions & 26 deletions
Original file line numberDiff line numberDiff line change
@@ -1,30 +1,30 @@
11
ref_name,rx_name,subject_name,collection_date,cumulative_group
2-
Turner21,BNT_W0_uninfected_01,BNT_uninfected,2020-12-20,BNT_uninfected
3-
Turner21,BNT_W0_uninfected_02,BNT_uninfected,2020-12-20,BNT_uninfected
4-
Turner21,BNT_W0_uninfected_03,BNT_uninfected,2020-12-20,BNT_uninfected
5-
Turner21,BNT_W0_uninfected_04,BNT_uninfected,2020-12-20,BNT_uninfected
6-
Turner21,BNT_W0_uninfected_05,BNT_uninfected,2020-12-20,BNT_uninfected
7-
Turner21,BNT_W0_uninfected_06,BNT_uninfected,2020-12-20,BNT_uninfected
8-
Turner21,BNT_W0_uninfected_07,BNT_uninfected,2020-12-20,BNT_uninfected
9-
Turner21,BNT_W0_uninfected_08,BNT_uninfected,2020-12-20,BNT_uninfected
10-
Turner21,BNT_W0_uninfected_09,BNT_uninfected,2020-12-20,BNT_uninfected
11-
Turner21,BNT_W0_uninfected_10,BNT_uninfected,2020-12-20,BNT_uninfected
12-
Turner21,BNT_W0_uninfected_11,BNT_uninfected,2020-12-20,BNT_uninfected
13-
Turner21,BNT_W0_uninfected_12,BNT_uninfected,2020-12-20,BNT_uninfected
14-
Turner21,BNT_W0_uninfected_13,BNT_uninfected,2020-12-20,BNT_uninfected
15-
Turner21,BNT_W0_uninfected_14,BNT_uninfected,2020-12-20,BNT_uninfected
16-
Turner21,BNT_W0_uninfected_15,BNT_uninfected,2020-12-20,BNT_uninfected
17-
Turner21,BNT_W0_uninfected_16,BNT_uninfected,2020-12-20,BNT_uninfected
18-
Turner21,BNT_W0_uninfected_17,BNT_uninfected,2020-12-20,BNT_uninfected
19-
Turner21,BNT_W0_uninfected_18,BNT_uninfected,2020-12-20,BNT_uninfected
20-
Turner21,BNT_W0_infected_01,BNT_infected,2020-12-20,BNT_infected
21-
Turner21,BNT_W0_infected_02,BNT_infected,2020-12-20,BNT_infected
22-
Turner21,BNT_W0_infected_03,BNT_infected,2020-12-20,BNT_infected
23-
Turner21,BNT_W0_infected_04,BNT_infected,2020-12-20,BNT_infected
24-
Turner21,BNT_W0_infected_05,BNT_infected,2020-12-20,BNT_infected
25-
Turner21,BNT_W0_infected_06,BNT_infected,2020-12-20,BNT_infected
26-
Turner21,BNT_W0_infected_07,BNT_infected,2020-12-20,BNT_infected
27-
Turner21,BNT_W0_infected_08,BNT_infected,2020-12-20,BNT_infected
2+
Turner21,BNT_W0_uninfected_01,BNT_uninfected,2020-12-20,CP_BNT_uninfected
3+
Turner21,BNT_W0_uninfected_02,BNT_uninfected,2020-12-20,CP_BNT_uninfected
4+
Turner21,BNT_W0_uninfected_03,BNT_uninfected,2020-12-20,CP_BNT_uninfected
5+
Turner21,BNT_W0_uninfected_04,BNT_uninfected,2020-12-20,CP_BNT_uninfected
6+
Turner21,BNT_W0_uninfected_05,BNT_uninfected,2020-12-20,CP_BNT_uninfected
7+
Turner21,BNT_W0_uninfected_06,BNT_uninfected,2020-12-20,CP_BNT_uninfected
8+
Turner21,BNT_W0_uninfected_07,BNT_uninfected,2020-12-20,CP_BNT_uninfected
9+
Turner21,BNT_W0_uninfected_08,BNT_uninfected,2020-12-20,CP_BNT_uninfected
10+
Turner21,BNT_W0_uninfected_09,BNT_uninfected,2020-12-20,CP_BNT_uninfected
11+
Turner21,BNT_W0_uninfected_10,BNT_uninfected,2020-12-20,CP_BNT_uninfected
12+
Turner21,BNT_W0_uninfected_11,BNT_uninfected,2020-12-20,CP_BNT_uninfected
13+
Turner21,BNT_W0_uninfected_12,BNT_uninfected,2020-12-20,CP_BNT_uninfected
14+
Turner21,BNT_W0_uninfected_13,BNT_uninfected,2020-12-20,CP_BNT_uninfected
15+
Turner21,BNT_W0_uninfected_14,BNT_uninfected,2020-12-20,CP_BNT_uninfected
16+
Turner21,BNT_W0_uninfected_15,BNT_uninfected,2020-12-20,CP_BNT_uninfected
17+
Turner21,BNT_W0_uninfected_16,BNT_uninfected,2020-12-20,CP_BNT_uninfected
18+
Turner21,BNT_W0_uninfected_17,BNT_uninfected,2020-12-20,CP_BNT_uninfected
19+
Turner21,BNT_W0_uninfected_18,BNT_uninfected,2020-12-20,CP_BNT_uninfected
20+
Turner21,BNT_W0_infected_01,BNT_infected,2020-12-20,CP_BNT_infected
21+
Turner21,BNT_W0_infected_02,BNT_infected,2020-12-20,CP_BNT_infected
22+
Turner21,BNT_W0_infected_03,BNT_infected,2020-12-20,CP_BNT_infected
23+
Turner21,BNT_W0_infected_04,BNT_infected,2020-12-20,CP_BNT_infected
24+
Turner21,BNT_W0_infected_05,BNT_infected,2020-12-20,CP_BNT_infected
25+
Turner21,BNT_W0_infected_06,BNT_infected,2020-12-20,CP_BNT_infected
26+
Turner21,BNT_W0_infected_07,BNT_infected,2020-12-20,CP_BNT_infected
27+
Turner21,BNT_W0_infected_08,BNT_infected,2020-12-20,CP_BNT_infected
2828
Turner21,BNT_W3_uninfected_01,BNT_uninfected,2021-01-10,BNT_uninfected
2929
Turner21,BNT_W3_uninfected_02,BNT_uninfected,2021-01-10,BNT_uninfected
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Turner21,BNT_W3_uninfected_03,BNT_uninfected,2021-01-10,BNT_uninfected

‎tables/subject_history/abe21-pth.csv‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1,13 +1,13 @@
11
ref_name,subject_name,event,event_date_cmp,event_date,location,iso_name,vaccine_name,severity
22
Abe21,Resident_Moderna,1st dose,~,2021-01-01,Canada,NULL,mRNA-1273,NULL
33
Abe21,Resident_Moderna,2nd dose,~,2021-01-29,Canada,NULL,mRNA-1273,NULL
4-
Abe21,Resident_Moderna,isolation,~,2021-02-26,Canada,NULL,NULL,NULL
4+
Abe21,Resident_Moderna,2nd dose isolation,~,2021-02-26,Canada,NULL,NULL,NULL
55
Abe21,Resident_Pfizer,1st dose,~,2021-01-01,Canada,NULL,BNT162b2,NULL
66
Abe21,Resident_Pfizer,2nd dose,~,2021-01-29,Canada,NULL,BNT162b2,NULL
7-
Abe21,Resident_Pfizer,isolation,~,2021-02-26,Canada,NULL,NULL,NULL
7+
Abe21,Resident_Pfizer,2nd dose isolation,~,2021-02-26,Canada,NULL,NULL,NULL
88
Abe21,Staff_Moderna,1st dose,~,2021-01-01,Canada,NULL,mRNA-1273,NULL
99
Abe21,Staff_Moderna,2nd dose,~,2021-01-29,Canada,NULL,mRNA-1273,NULL
10-
Abe21,Staff_Moderna,isolation,~,2021-02-26,Canada,NULL,NULL,NULL
10+
Abe21,Staff_Moderna,2nd dose isolation,~,2021-02-26,Canada,NULL,NULL,NULL
1111
Abe21,Staff_Pfizer,1st dose,~,2021-01-01,Canada,NULL,BNT162b2,NULL
1212
Abe21,Staff_Pfizer,2nd dose,~,2021-01-29,Canada,NULL,BNT162b2,NULL
13-
Abe21,Staff_Pfizer,isolation,~,2021-02-26,Canada,NULL,NULL,NULL
13+
Abe21,Staff_Pfizer,2nd dose isolation,~,2021-02-26,Canada,NULL,NULL,NULL

‎tables/subject_history/pannus21-pth.csv‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1,15 +1,15 @@
11
ref_name,subject_name,event,event_date_cmp,event_date,location,iso_name,vaccine_name,severity
22
Pannus21,Naive_Staff,1st dose,~,2021-01-01,Belgium,NULL,BNT162b2,NULL
33
Pannus21,Naive_Staff,2nd dose,~,2021-01-22,Belgium,NULL,BNT162b2,NULL
4-
Pannus21,Naive_Staff,isolation,~,2021-02-19,Belgium,NULL,NULL,NULL
4+
Pannus21,Naive_Staff,2nd dose isolation,~,2021-02-19,Belgium,NULL,NULL,NULL
55
Pannus21,Naive_Resident,1st dose,~,2021-01-01,Belgium,NULL,BNT162b2,NULL
66
Pannus21,Naive_Resident,2nd dose,~,2021-01-22,Belgium,NULL,BNT162b2,NULL
7-
Pannus21,Naive_Resident,isolation,~,2021-02-19,Belgium,NULL,NULL,NULL
7+
Pannus21,Naive_Resident,2nd dose isolation,~,2021-02-19,Belgium,NULL,NULL,NULL
88
Pannus21,Infected_Staff,infection,~,2020-02-21,Belgium,NULL,NULL,NULL
99
Pannus21,Infected_Staff,1st dose,~,2021-01-01,Belgium,NULL,BNT162b2,NULL
1010
Pannus21,Infected_Staff,2nd dose,~,2021-01-22,Belgium,NULL,BNT162b2,NULL
11-
Pannus21,Infected_Staff,isolation,~,2021-02-19,Belgium,NULL,NULL,NULL
11+
Pannus21,Infected_Staff,2nd dose isolation,~,2021-02-19,Belgium,NULL,NULL,NULL
1212
Pannus21,Infected_Resident,infection,~,2020-02-21,Belgium,NULL,NULL,NULL
1313
Pannus21,Infected_Resident,1st dose,~,2021-01-01,Belgium,NULL,BNT162b2,NULL
1414
Pannus21,Infected_Resident,2nd dose,~,2021-01-22,Belgium,NULL,BNT162b2,NULL
15-
Pannus21,Infected_Resident,isolation,~,2021-02-19,Belgium,NULL,NULL,NULL
15+
Pannus21,Infected_Resident,2nd dose isolation,~,2021-02-19,Belgium,NULL,NULL,NULL

‎tables/subject_history/sahin21-pth.csv‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
11
ref_name,subject_name,event,event_date_cmp,event_date,location,iso_name,vaccine_name,severity
22
Sahin21,BNT_Fig4d,1st dose,~,2021-01-01,Germany,NULL,BNT162b2,NULL
33
Sahin21,BNT_Fig4d,2nd dose,~,2021-01-22,Germany,NULL,BNT162b2,NULL
4-
Sahin21,BNT_Fig4d,isolation,~,2021-01-29,Germany,NULL,NULL,NULL
4+
Sahin21,BNT_Fig4d,2nd dose isolation,~,2021-01-29,Germany,NULL,NULL,NULL
55
Sahin21,BNT_Fig1b,1st dose,~,2021-01-01,Germany,NULL,BNT162b2,NULL
66
Sahin21,BNT_Fig1b,2nd dose,~,2021-01-22,Germany,NULL,BNT162b2,NULL
7-
Sahin21,BNT_Fig1b,isolation,~,2021-02-13,Germany,NULL,NULL,NULL
7+
Sahin21,BNT_Fig1b,2nd dose isolation,~,2021-02-13,Germany,NULL,NULL,NULL

‎tables/subject_history/vacharathit21-pth.csv‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
11
ref_name,subject_name,event,event_date_cmp,event_date,location,iso_name,vaccine_name,severity
22
Vacharathit21,CoronaVac,1st dose,~,2021-01-01,Thailand,NULL,CoronaVac,NULL
33
Vacharathit21,CoronaVac,2nd dose,~,2021-01-29,Thailand,NULL,CoronaVac,NULL
4-
Vacharathit21,CoronaVac,isolation,~,2021-02-13,Thailand,NULL,NULL,NULL
4+
Vacharathit21,CoronaVac,2nd dose isolation,~,2021-02-13,Thailand,NULL,NULL,NULL
55
Vacharathit21,CP_2020,infection,~,2020-03-01,Thailand,NULL,NULL,Hospitalized
66
Vacharathit21,CP_2020,isolation,~,2020-03-19,Thailand,NULL,NULL,NULL
77
Vacharathit21,CP_2021,infection,~,2021-04-01,Thailand,NULL,NULL,Hospitalized

‎tables/subject_history/zhao21-pth.csv‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -2,8 +2,8 @@
22
Zhao21,CoronaVac_Regimen1,1st dose,~,2021-01-01,China,NULL,CoronaVac,NULL
33
Zhao21,CoronaVac_Regimen1,2nd dose,~,2021-01-29,China,NULL,CoronaVac,NULL
44
Zhao21,CoronaVac_Regimen1,3rd dose,~,2021-03-05,China,NULL,CoronaVac,NULL
5-
Zhao21,CoronaVac_Regimen1,isolation,~,2021-03-19,China,NULL,NULL,NULL
5+
Zhao21,CoronaVac_Regimen1,3rd dose isolation,~,2021-03-19,China,NULL,NULL,NULL
66
Zhao21,CoronaVac_Regimen2,1st dose,~,2021-01-01,China,NULL,CoronaVac,NULL
77
Zhao21,CoronaVac_Regimen2,2nd dose,~,2021-01-29,China,NULL,CoronaVac,NULL
88
Zhao21,CoronaVac_Regimen2,3rd dose,~,2021-05-22,China,NULL,CoronaVac,NULL
9-
Zhao21,CoronaVac_Regimen2,isolation,~,2021-06-26,China,NULL,NULL,NULL
9+
Zhao21,CoronaVac_Regimen2,3rd dose isolation,~,2021-06-26,China,NULL,NULL,NULL

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