[Version: >= 2.2.2] Can't add protein scores in Protein Scorer node #22
Description
In Proteome Discoverer 3.1 using the Protein Scorer node in the consensus workflow will yield an error with MS Annika. This error does not terminate the search (or the creation of the result) and does not affect crosslink results!
However, as a result it currently might not be possible to calculate Protein FDR with MS Annika in Proteome Discoverer (in case that would be something you are interested in - we don't have experience with that).
We recommend using xiFDR in combination with our xiFDR exporter for higher-level FDR calculations.
Nevertheless, we are working on a fix!