Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add tests #130

Open
timodonnell opened this issue Dec 30, 2016 · 1 comment
Open

Add tests #130

timodonnell opened this issue Dec 30, 2016 · 1 comment

Comments

@timodonnell
Copy link
Member

Would it be feasible to add tests that run epidisco locally on a small set of reads and verify that the expected variant calls are made? We generated data like this for guacamole (see e.g. here and here), which could potentially be used.

Having tests would hopefully catch issues like #128

@smondet
Copy link
Member

smondet commented Dec 30, 2016

Just noting: #128 is just command line parsing → could be caught with --dry-run option (no need for data or a Ketrew server to submit the pipeline).

@ihodes ihodes changed the title add tests Add tests Jan 12, 2017
@ihodes ihodes mentioned this issue Jan 12, 2017
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants