To do list: 1̶.̶ W̶r̶i̶t̶e̶ s̶c̶r̶i̶p̶t̶s̶ f̶o̶r̶ P̶H̶A̶S̶T̶E̶R̶,̶ V̶i̶r̶S̶o̶r̶t̶e̶r̶ a̶n̶d̶ P̶r̶o̶p̶h̶a̶g̶e̶H̶u̶n̶t̶e̶r̶ 2̶.̶ G̶e̶t̶ P̶h̶a̶g̶e̶B̶o̶o̶s̶t̶ w̶o̶r̶k̶i̶n̶g̶ 3̶.̶ P̶r̶e̶d̶i̶c̶t̶ p̶r̶o̶p̶h̶a̶g̶e̶s̶ i̶n̶ P̶A̶1̶4̶,̶ P̶A̶O̶1̶,̶ P̶A̶K̶,̶ P̶A̶7̶ a̶n̶d̶ S̶B̶W̶1̶2̶5̶ 4̶.̶ I̶d̶e̶n̶t̶i̶f̶y̶ b̶e̶s̶t̶ t̶o̶o̶l̶s̶/̶ c̶o̶m̶b̶i̶n̶a̶t̶i̶o̶n̶ o̶f̶ t̶o̶o̶l̶s̶ t̶o̶ p̶r̶e̶d̶i̶c̶t̶ e̶x̶p̶e̶c̶t̶e̶d̶ p̶r̶o̶p̶h̶a̶g̶e̶s̶ 5̶.̶ R̶u̶n̶ p̶r̶e̶d̶i̶c̶t̶i̶o̶n̶ t̶o̶o̶l̶s̶ o̶n̶ f̶o̶o̶d̶ i̶s̶o̶l̶a̶t̶e̶s̶ 6. Dereplicate sequences to gain a single prediction for each region 7. Perform alignments 8. Perform phylogeny