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Improve display of presentation/immunogenicity data in pVACtools

Status: Open.

#1280 In griffithlab/pVACtools;

· susannasiebert opened on Aug 13, 2025

Improve handling of immunogenicity and presentation data

Status: Open.

#1281 In griffithlab/pVACtools;

· susannasiebert opened on Aug 13, 2025

Rename Mutation output column to Index in pVACbind and pVACfuse

Status: Open.

#1323 In griffithlab/pVACtools;

· susannasiebert opened on Oct 10, 2025

Investigate PRIME prediction algorithm

prediction_algorithms

Status: Open.

#1029 In griffithlab/pVACtools;

· jhundal opened on Sep 25, 2023

Add support for MixMHCpred?

enhancement

grant

prediction_algorithms

Status: Open.

#240 In griffithlab/pVACtools;

· malachig opened on Jan 3, 2019

Consider integration of MixMHCPred2

prediction_algorithms

Status: Open.

#1093 In griffithlab/pVACtools;

· malachig opened on Apr 15, 2024

ML predictor integration into pvacseq

Status: Open (in progress).

griffithlab/pVACtoolsnumber 1333

#1333 In griffithlab/pVACtools;

· jyao36 opened on Nov 3, 2025

Remove --exclude-NA option in pVACtools 7.0

Status: Open.

#1343 In griffithlab/pVACtools;

· susannasiebert opened on Nov 25, 2025

Update percentile threshold behavior for pVACvector in 7.0

Status: Open.

#1344 In griffithlab/pVACtools;

· susannasiebert opened on Nov 25, 2025

Add support for calculating percentile ranks on a consistent set of reference peptides

Status: Open.

#1192 In griffithlab/pVACtools;

· malachig opened on Feb 4, 2025

Investigate TLStab (pMHC stability predictor) , TLImm (immunogenicity predictor)

prediction_algorithms

Status: Open.

#1183 In griffithlab/pVACtools;

· mhoang22 opened on Jan 28, 2025

Investigate ImmuScope for class II predictions

prediction_algorithms

Status: Open.

#1330 In griffithlab/pVACtools;

· malachig opened on Oct 22, 2025