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AlphaFold DB link in CI
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.github/workflows/CI.yml

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@@ -43,11 +43,11 @@ jobs:
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run: |
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wget https://files.rcsb.org/view/1CRN.pdb
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wget https://files.rcsb.org/view/1SSU.cif
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wget https://alphafold.ebi.ac.uk/files/AF-P31434-F1-model_v4.pdb
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wget https://alphafold.ebi.ac.uk/files/AF-P31434-F1-model_v6.pdb
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- name: Test search
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run: time python bin/progres search -q 1CRN.pdb -t scope95
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- name: Test domain split
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run: time python bin/progres search -q AF-P31434-F1-model_v4.pdb -t cath40 -c
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run: time python bin/progres search -q AF-P31434-F1-model_v6.pdb -t cath40 -c
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- name: Test score
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run: time python bin/progres score 1CRN.pdb 1SSU.cif > score.txt
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- name: Check score
@@ -91,11 +91,11 @@ jobs:
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run: |
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wget https://files.rcsb.org/view/1CRN.pdb
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wget https://files.rcsb.org/view/1SSU.cif
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wget https://alphafold.ebi.ac.uk/files/AF-P31434-F1-model_v4.pdb
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wget https://alphafold.ebi.ac.uk/files/AF-P31434-F1-model_v6.pdb
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- name: Test search
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run: time progres search -q 1CRN.pdb -t scope95
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- name: Test domain split
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run: time progres search -q AF-P31434-F1-model_v4.pdb -t cath40 -c
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run: time progres search -q AF-P31434-F1-model_v6.pdb -t cath40 -c
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- name: Test score
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run: time progres score 1CRN.pdb 1SSU.cif > score.txt
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- name: Check score

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