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fvittSteve Goldhaber
fvitt
authored and
Steve Goldhaber
committed
ESCOMP tag: cam6_4_077
Merge pull request ESCOMP#1262 from fvitt/waccm7 cam6_4_077: WACCM7(x) compsets ESCOMP commit: 44c1893
1 parent adb43aa commit 6dc2605

24 files changed

+18157
-22
lines changed

‎bld/namelist_files/use_cases/waccm_ma_hist_cam7.xml

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<?xml version="1.0"?>
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<namelist_defaults>
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<start_ymd>19790101</start_ymd>
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<!-- Solar data from NRL -->
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<solar_irrad_data_file>atm/cam/solar/SolarForcingCMIP6_18491230-23000102_c20200615.nc</solar_irrad_data_file>
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<!-- Kp and F10.7 -->
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<solar_parms_data_file>atm/cam/solar/SolarForcingCMIP6_18491230-23000102_c20200615.nc</solar_parms_data_file>
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<!-- Energetic Particle Precipitation -->
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<epp_all_filepath>atm/cam/solar/SolarForcingCMIP6_18491230-23000102_c20200615.nc</epp_all_filepath>
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<epp_all_varname>'epp_ion_rates'</epp_all_varname>
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<!--Species IC -->
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<ncdata dyn="se" hgrid="ne30np4" nlev="135">atm/waccm/ic/FHIST_WAt1ma_ne30pg3_spinup01.cam.i.1980-01-01-00000_c250124.nc</ncdata>
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<ncdata dyn="se" hgrid="ne16np4" nlev="135">atm/waccm/ic/FHIST_WAt1ma_ne16pg3_spinup01.cam.i.1980-01-01-00000_c250124.nc</ncdata>
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<ncdata dyn="se" hgrid="ne30np4" nlev="189">atm/waccm/ic/FHIST_WXma_ne30pg3_spinup03.cam.i.1980-01-01-00000_c250201.nc</ncdata>
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<ncdata dyn="se" hgrid="ne16np4" nlev="189">atm/waccm/ic/FHIST_WXma_ne16pg3_spinup02.cam.i.1980-01-01-00000_c250201.nc</ncdata>
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<!-- topography -->
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<bnd_topo dyn="se" hgrid="ne16np4" npg="3">atm/cam/topo/se/ne16pg3_gmted2010_modis_bedmachine_nc3000_Laplace0200_20230202.nc</bnd_topo>
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<!-- LBC, UBC Files -->
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<flbc_type>SERIAL</flbc_type>
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<flbc_file>atm/waccm/lb/LBC_17500116-20150116_CMIP6_0p5degLat_c180905.nc</flbc_file>
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<flbc_list>
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'CCL4', 'CF2CLBR', 'CF3BR', 'CFC11', 'CFC113', 'CFC12', 'CH3BR', 'CH3CCL3', 'CH3CL', 'CH4', 'CO2', 'H2',
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'HCFC22', 'N2O', 'CFC114', 'CFC115', 'HCFC141B', 'HCFC142B', 'CH2BR2', 'CHBR3', 'H2402', 'OCS', 'CFC11eq'
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</flbc_list>
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<!-- Upper Boundary -->
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<tgcm_ubc_file>atm/waccm/ub/tgcm_ubc_1850-2100_c100204.nc</tgcm_ubc_file>
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<tgcm_ubc_data_type>'INTERP_MISSING_MONTHS'</tgcm_ubc_data_type>
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<!-- Emissions -->
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<csw_time_type>SERIAL</csw_time_type>
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<!-- External forcing -->
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<ext_frc_type>INTERP_MISSING_MONTHS</ext_frc_type>
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<!-- Surface emissions -->
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<srf_emis_type>INTERP_MISSING_MONTHS</srf_emis_type>
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<!-- History Streams -->
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<mfilt> 1, 30, 120, 240, 240, 480, 365, 73, 30 </mfilt>
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<nhtfrq> 0, -24, -6, -3, -1, 1, -24,-120,-240 </nhtfrq>
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<avgflag_pertape> 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'I'</avgflag_pertape>
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<history_cesm_forcing>.true.</history_cesm_forcing>
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<history_scwaccm_forcing>.true. </history_scwaccm_forcing>
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<history_waccm>.true.</history_waccm>
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<history_amwg>.true.</history_amwg>
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<history_carma>.false.</history_carma>
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<history_clubb>.false.</history_clubb>
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<history_chemistry>.false.</history_chemistry>
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<history_chemspecies_srf>.false.</history_chemspecies_srf>
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<history_aerosol>.false.</history_aerosol>
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<history_aero_optics>.false.</history_aero_optics>
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<gw_qbo_hdepth_scaling>0.25D0</gw_qbo_hdepth_scaling>
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</namelist_defaults>

‎bld/namelist_files/use_cases/waccm_sc_hist_cam7.xml

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<?xml version="1.0"?>
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<namelist_defaults>
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<start_ymd>19790101</start_ymd>
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<!-- Solar data from NRL -->
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<solar_irrad_data_file>atm/cam/solar/SolarForcingCMIP6_18491230-23000102_c20200615.nc</solar_irrad_data_file>
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<!-- Kp and F10.7 -->
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<solar_parms_data_file>atm/cam/solar/SolarForcingCMIP6_18491230-23000102_c20200615.nc</solar_parms_data_file>
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<!--Species IC -->
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<ncdata dyn="se" hgrid="ne30np4" nlev="135">atm/waccm/ic/FHIST_WAt1ma_ne30pg3_spinup01.cam.i.1980-01-01-00000_c250124.nc</ncdata>
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<ncdata dyn="se" hgrid="ne16np4" nlev="135">atm/waccm/ic/FHIST_WAt1ma_ne16pg3_spinup01.cam.i.1980-01-01-00000_c250124.nc</ncdata>
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<ncdata dyn="se" hgrid="ne30np4" nlev="189">atm/waccm/ic/FHIST_WXma_ne30pg3_spinup03.cam.i.1980-01-01-00000_c250201.nc</ncdata>
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<ncdata dyn="se" hgrid="ne16np4" nlev="189">atm/waccm/ic/FHIST_WXma_ne16pg3_spinup02.cam.i.1980-01-01-00000_c250201.nc</ncdata>
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<!-- topography -->
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<bnd_topo dyn="se" hgrid="ne16np4" npg="3">atm/cam/topo/se/ne16pg3_gmted2010_modis_bedmachine_nc3000_Laplace0200_20230202.nc</bnd_topo>
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<!-- LBC, UBC Files -->
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<flbc_type>SERIAL</flbc_type>
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<flbc_file>atm/waccm/lb/LBC_17500116-20150116_CMIP6_0p5degLat_c180905.nc</flbc_file>
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<flbc_list>'CO2','CH4','N2O','CFC11','CFC12','CFC11eq'</flbc_list>
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<!-- upper atmos forcings -->
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<waccm_forcing_type>INTERP_MISSING_MONTHS</waccm_forcing_type>
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<waccm_forcing_file>SCWACCM_forcing_zm_L70_1849-2015_CMIP6ensAvg_c181011.nc</waccm_forcing_file>
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<waccm_forcing_datapath>atm/waccm/waccm_forcing</waccm_forcing_datapath>
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<!-- ozone data -->
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<prescribed_ozone_datapath> 'atm/cam/ozone_strataero' </prescribed_ozone_datapath>
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<prescribed_ozone_file > 'ozone_strataero_WACCM_L70_zm5day_18500101-20150103_CMIP6ensAvg_c180923.nc' </prescribed_ozone_file>
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<prescribed_ozone_name > 'O3' </prescribed_ozone_name>
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<prescribed_ozone_type > SERIAL </prescribed_ozone_type>
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<!-- Prescribed stratospheric aerosols -->
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<prescribed_strataero_use_chemtrop> .true. </prescribed_strataero_use_chemtrop>
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<prescribed_strataero_datapath > 'atm/cam/ozone_strataero' </prescribed_strataero_datapath>
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<prescribed_strataero_file > 'ozone_strataero_WACCM_L70_zm5day_18500101-20150103_CMIP6ensAvg_c180923.nc' </prescribed_strataero_file>
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<prescribed_strataero_type > SERIAL </prescribed_strataero_type>
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<!-- Prescribed oxidants for aerosol chemistry -->
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<tracer_cnst_datapath > 'atm/cam/tracer_cnst' </tracer_cnst_datapath>
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<tracer_cnst_file > 'tracer_cnst_halons_3D_L70_1849-2015_CMIP6ensAvg_c180927.nc' </tracer_cnst_file>
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<tracer_cnst_specifier> 'O3','OH','NO3','HO2','HALONS' </tracer_cnst_specifier>
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<tracer_cnst_type > INTERP_MISSING_MONTHS </tracer_cnst_type>
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<tracer_cnst_filelist > '' </tracer_cnst_filelist>
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<!-- Emissions -->
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<csw_time_type>SERIAL</csw_time_type>
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<!-- External forcing -->
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<ext_frc_type>INTERP_MISSING_MONTHS</ext_frc_type>
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<!-- Surface emissions -->
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<srf_emis_type>INTERP_MISSING_MONTHS</srf_emis_type>
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<!-- History Streams -->
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<mfilt> 1, 30, 120, 240, 240, 480, 365, 73, 30 </mfilt>
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<nhtfrq> 0, -24, -6, -3, -1, 1, -24,-120,-240 </nhtfrq>
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<avgflag_pertape> 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'I'</avgflag_pertape>
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<history_cesm_forcing>.true.</history_cesm_forcing>
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<history_scwaccm_forcing>.true. </history_scwaccm_forcing>
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<history_waccm>.true.</history_waccm>
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<history_amwg>.true.</history_amwg>
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<history_carma>.false.</history_carma>
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<history_clubb>.false.</history_clubb>
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<history_chemistry>.false.</history_chemistry>
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<history_chemspecies_srf>.false.</history_chemspecies_srf>
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<history_aerosol>.false.</history_aerosol>
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<history_aero_optics>.false.</history_aero_optics>
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<gw_qbo_hdepth_scaling>0.25D0</gw_qbo_hdepth_scaling>
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<sim_year>1850-2015</sim_year>
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</namelist_defaults>

‎cime

Submodule cime updated 31 files

‎cime_config/config_pes.xml

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</pes>
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</mach>
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<mach name="derecho">
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<pes pesize="any" compset="_CAM\d0%WX">
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<pes pesize="any" compset="_CAM\d0%W(X|A)">
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<comment>none</comment>
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<ntasks>
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<ntasks_atm>-4</ntasks_atm>
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</pes>
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</mach>
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<mach name="derecho">
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<pes pesize="any" compset="_CAM\d0%WX">
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<pes pesize="any" compset="_CAM\d0%W(X|A)">
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<comment>none</comment>
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<ntasks>
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<ntasks_atm>-16</ntasks_atm>

‎doc/ChangeLog

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===============================================================
22

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Tag name: cam6_4_077
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Originator(s): fvitt
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Date: 18 Mar 2025
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One-line Summary: Introduce HIST WACCM7(X) compsets
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Github PR URL: https://github.com/ESCOMP/CAM/pull/1262
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Purpose of changes (include the issue number and title text for each relevant GitHub issue):
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Add WACCM(X)7 compsets #1248
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Add WACCM T4MA chemistry mechanism
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Fix vertical indexing mismatch in rrtmgp/mcica_subcol_gen.F90 in high-top configuration #1261
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Update geomagnitic reference field coeficients for WACCM and WACCMX to IGRF 14
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Describe any changes made to build system: N/A
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Describe any changes made to the namelist: N/A
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List any changes to the defaults for the boundary datasets: N/A
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Describe any substantial timing or memory changes: N/A
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Code reviewed by: brian-eaton, cacraigucar, PeterHjortLauritzen
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List all files eliminated: N/A
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List all files added and what they do:
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A bld/namelist_files/use_cases/waccm_ma_hist_cam7.xml
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A bld/namelist_files/use_cases/waccm_sc_hist_cam7.xml
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- build-namelist use case files for WACCM7(X) compsets
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A src/chemistry/pp_waccm_t4ma_mam5/chem_mech.doc
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A src/chemistry/pp_waccm_t4ma_mam5/chem_mech.in
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A src/chemistry/pp_waccm_t4ma_mam5/chem_mods.F90
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A src/chemistry/pp_waccm_t4ma_mam5/m_rxt_id.F90
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A src/chemistry/pp_waccm_t4ma_mam5/m_spc_id.F90
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A src/chemistry/pp_waccm_t4ma_mam5/mo_adjrxt.F90
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A src/chemistry/pp_waccm_t4ma_mam5/mo_exp_sol.F90
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A src/chemistry/pp_waccm_t4ma_mam5/mo_imp_sol.F90
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A src/chemistry/pp_waccm_t4ma_mam5/mo_indprd.F90
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A src/chemistry/pp_waccm_t4ma_mam5/mo_lin_matrix.F90
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A src/chemistry/pp_waccm_t4ma_mam5/mo_lu_factor.F90
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A src/chemistry/pp_waccm_t4ma_mam5/mo_lu_solve.F90
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A src/chemistry/pp_waccm_t4ma_mam5/mo_nln_matrix.F90
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A src/chemistry/pp_waccm_t4ma_mam5/mo_phtadj.F90
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A src/chemistry/pp_waccm_t4ma_mam5/mo_prod_loss.F90
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A src/chemistry/pp_waccm_t4ma_mam5/mo_rxt_rates_conv.F90
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A src/chemistry/pp_waccm_t4ma_mam5/mo_setrxt.F90
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A src/chemistry/pp_waccm_t4ma_mam5/mo_sim_dat.F90
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- new WACCM T4MA chemistry mechanism
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List all existing files that have been modified, and describe the changes:
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M bld/build-namelist
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- namelist setting for
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. T4MA chemistry
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. HT model top
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M bld/config_files/definition.xml
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- expand model_top to include
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. "ht" -- high-top waccm
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. "xt" -- extended-top waccmx
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- include waccmx_t4ma_mam5 chemistry mechanism
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M bld/configure
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- set default nlev according to model_top
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M bld/namelist_files/namelist_defaults_cam.xml
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- update igrf_geomag_coefs files to IGRF14
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- default namelist settings for model_top ht and xt (se_* and gw)
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M cime_config/config_component.xml
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M cime_config/config_compsets.xml
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- implement WACCM7(X) compsets
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M cime_config/config_pes.xml
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- default PE-layouts for ACCM7(X) compsets on derecho
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M cime_config/testdefs/testlist_cam.xml
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- add regression test for WACCM7(X) compsets
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- fix broken WACCMX AMIE test by using aqua-planet mode
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M src/physics/rrtmgp/mcica_subcol_gen.F90
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- fix indexing mismatch issue with higher top models
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If there were any failures reported from running test_driver.sh on any test
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platform, and checkin with these failures has been OK'd by the gatekeeper,
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then copy the lines from the td.*.status files for the failed tests to the
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appropriate machine below. All failed tests must be justified.
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derecho/intel/aux_cam:
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FAIL SMS_D_Ln9_P1280x1.ne0ARCTICne30x4_ne0ARCTICne30x4_mt12.FHIST.derecho_intel.cam-outfrq9s
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FAIL SMS_D_Ln9_P1280x1.ne0CONUSne30x8_ne0CONUSne30x8_mt12.FCHIST.derecho_intel.cam-outfrq9s
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- pre-existing failures due to build-namelist error requiring CLM/CTSM external update
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FAIL ERP_Ln9.f09_f09_mg17.FCSD_HCO.derecho_intel.cam-outfrq9s
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DIFF SMS_Lh12.f09_f09_mg17.FCSD_HCO.derecho_intel.cam-outfrq3h
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- pre-existing failures due to HEMCO not having reproducible results (issues #1018 and #856)
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DIFF ERP_Ld3.ne16pg3_ne16pg3_mg17.FHISTC_WAt1ma.derecho_intel.cam-reduced_hist1d
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DIFF ERP_Ln9.ne30pg3_ne30pg3_mg17.FHISTC_WAma.derecho_intel.cam-outfrq9s
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FAIL ERS_Ln9.ne30pg3_ne30pg3_mg17.FHISTC_WXma.derecho_intel.cam-outfrq9s
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DIFF SMS_C2_D_Ln9.ne16pg3_ne16pg3_mg17.FHISTC_WXma.derecho_intel.cam-outfrq9s
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DIFF SMS_D_Ln9.ne16_ne16_mg17.QPX2000.derecho_intel.cam-outfrq9s_amie
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- new tests -- no baselines to compare against
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NLFAIL ERP_Lh12.f19_f19_mg17.FW4madSD.derecho_intel.cam-outfrq3h
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NLFAIL ERS_Ln9.f09_f09_mg17.FX2000.derecho_intel.cam-outfrq9s
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NLFAIL ERS_Ln9.f19_f19_mg17.FXSD.derecho_intel.cam-outfrq9s
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NLFAIL SMS_D_Ln9.f19_f19_mg17.FWma2000climo.derecho_intel.cam-outfrq9s
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NLFAIL SMS_D_Ln9.f19_f19_mg17.FWma2000climo.derecho_intel.cam-outfrq9s_waccm_ma_mam4
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NLFAIL SMS_Ld1.f09_f09_mg17.FW2000climo.derecho_intel.cam-outfrq1d
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NLFAIL SMS_Ln9.f09_f09_mg17.FW1850.derecho_intel.cam-reduced_hist3s
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NLFAIL SMS_Ln9.ne30pg3_ne30pg3_mg17.FW2000climo.derecho_intel.cam-outfrq9s_rrtmgp
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- namelist compare failures due to geomag IGRF inputs updates
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derecho/nvhpc/aux_cam: All PASS
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izumi/nag/aux_cam:
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NLFAIL ERC_D_Ln9.f10_f10_mg37.QPWmaC6.izumi_nag.cam-outfrq3s
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NLFAIL SMS_D_Ln3.ne5pg3_ne5pg3_mg37.QPX2000.izumi_nag.cam-outfrq3s
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NLFAIL SMS_D_Ln6.ne5_ne5_mg37.QPWmaC4.izumi_nag.cam-outfrq3s_physgrid_tem
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- namelist compare failures due to geomag IGRF inputs updates
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izumi/gnu/aux_cam:
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DIFF ERP_Ln9_P24x2.f45_f45_mg37.QPWmaC6.izumi_gnu.cam-outfrq9s_mee_fluxes
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- here change in geomag IGRF inputs caused differences due to start date in 2015
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NLFAIL SMS_D_Ln9.f10_f10_mg37.QPWmaC4.izumi_gnu.cam-outfrq9s_apmee
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NLFAIL SMS_P48x1_D_Ln9.f19_f19_mg17.FW4madSD.izumi_gnu.cam-outfrq9s
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- namelist compare failures due to geomag IGRF inputs updates
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Summarize any changes to answers: bit-for-bit unchanged
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===============================================================
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===============================================================
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3141
Tag name: cam6_4_076
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Originator(s): eaton
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Date: 17 March 2025

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