Merge pull request #49 from gogepp/dev

mboudet · web-flow · commit 2963117a87d1 · 2023-11-17T11:15:17.000+01:00
Release 0.4.9
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,6 +5,12 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html)
 
+## [0.4.9] 2023-11-17
+
+### Fixed
+
+- Error management in expression files
+
 ## [0.4.8] 2023-10-20
 
 ### Added
diff --git a/imports/api/transcriptomes/addExpression.js b/imports/api/transcriptomes/addExpression.js
@@ -123,7 +123,7 @@ const parseExpressionTsv = ({
         const gene = Genes.findOne(geneQuery);
 
         if (typeof gene === 'undefined') {
-          logger.warn(`${target_id} not found`);
+          logger.warn(`${row[firstColumn]} not found`);
         } else {
           nInserted += 1;
           replicaGroups.forEach((replicaGroup) => {
diff --git a/package.json b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "genoboo",
-  "version": "0.4.8",
+  "version": "0.4.9",
   "repository": "https://github.com/gogepp/genoboo",
   "description": "A portable website for browsing and querying genome sequences and annotations. Forked from genenotebook",
   "license": "AGPL-3.0",
diff --git a/private/data/Bnigra_abundance.tsv b/private/data/Bnigra_abundance.tsv
@@ -1,2 +1,3 @@
 gene	sample1	sample2	sample3	sample4
 Bni%7CB01g000010.2N	40	60	80	90
+blabla	1	2	3	4

Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"name": "genoboo",`
`3`		`- "version": "0.4.8",`
	`3`	`+ "version": "0.4.9",`
`4`	`4`	`"repository": "https://github.com/gogepp/genoboo",`
`5`	`5`	`"description": "A portable website for browsing and querying genome sequences and annotations. Forked from genenotebook",`
`6`	`6`	`"license": "AGPL-3.0",`
Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,3 @@`
`1`	`1`	`gene sample1 sample2 sample3 sample4`
`2`	`2`	`Bni%7CB01g000010.2N 40 60 80 90`
	`3`	`+blabla 1 2 3 4`