Resolve Sphinx doc warnings

[jsstevenson]

Broadly: I think it's good to stay on top of these, because the warnings are often informative/indicative of an unintended problem, but they're easy to miss if you're letting too much stuff hang out unresolved.

I've made two PRs to fix some of them. Here's what's left:

/Users/jss009/code/vrs/docs/source/concepts/LocationAndReference/SequenceLocation.rst:90: WARNING: TODO entry found: Describe and add a ref to an intronic variant profile
/Users/jss009/code/vrs/docs/source/def/gks-core/date.rst: WARNING: document isn't included in any toctree
/Users/jss009/code/vrs/docs/source/def/gks-core/datetime.rst: WARNING: document isn't included in any toctree
/Users/jss009/code/vrs/docs/source/appendices/maturity_model.rst:78: WARNING: undefined label: 'development-process'
/Users/jss009/code/vrs/docs/source/concepts/SequenceExpression/LiteralSequenceExpression.rst:6: WARNING: undefined label: 'sequence'
/Users/jss009/code/vrs/docs/source/def/vrs/ReferenceLengthExpression.rst:84: WARNING: undefined label: 'sequence'
/Users/jss009/code/vrs/docs/source/def/vrs/SequenceExpression.rst:7: WARNING: undefined label: 'sequence'
/Users/jss009/code/vrs/docs/source/conventions/computed_identifiers.rst:26: WARNING: undefined label: 'should-normalize'
/Users/jss009/code/vrs/docs/source/conventions/example.rst:20: WARNING: undefined label: 'state'
/Users/jss009/code/vrs/docs/source/conventions/example.rst:38: WARNING: undefined label: 'inter-residue-coordinates-design'
/Users/jss009/code/vrs/docs/source/conventions/example.rst:38: WARNING: undefined label: 'inter-residue-coordinates-design'
/Users/jss009/code/vrs/docs/source/conventions/example.rst:206: WARNING: undefined label: 'future-plans'
/Users/jss009/code/vrs/docs/source/conventions/example.rst:211: WARNING: undefined label: 'implementations'
/Users/jss009/code/vrs/docs/source/conventions/example.rst:214: WARNING: undefined label: 'associating_annotations'
/Users/jss009/code/vrs/docs/source/conventions/required_data.rst:87: WARNING: undefined label: 'impl-vrs-python'
/Users/jss009/code/vrs/docs/source/def/vrs/ReferenceLengthExpression.rst:84: WARNING: undefined label: 'sequence'
/Users/jss009/code/vrs/docs/source/def/vrs/SequenceExpression.rst:7: WARNING: undefined label: 'sequence'

I'd advise removal of the hanging refs unless there is a genuine intention to circle back to them (I think the TODO is fine and keeping a few items in without putting them in the toctree is fine as a temporary measure).