homo-veloce/requirements.txt at main · fullscreen-triangle/homo-veloce · GitHub

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numpy==1.21.*
pandas==1.3.*
scipy==1.7.*
matplotlib==3.4.*
seaborn==0.11.*
scikit-learn==1.0.*
statsmodels==0.13.*
tensorflow==2.6.*
torch==1.10.*
torchvision==0.11.*
jupyter==1.0.*
notebook==6.4.*
ipywidgets==7.6.*
pytest==6.2.*
black==21.10b0
flake8==4.0.*
h5py==3.6.*
openpyxl==3.0.*
tables==3.6.*
pyyaml==6.0.*
networkx==2.6.*
opencv-python==4.5.*
pillow==8.4.*
transformers==4.12.*
tokenizers==0.10.*
spacy==3.2.*
tqdm==4.62.*
boto3==1.20.*
pytest==6.2.*
wandb==0.12.*
ray[tune]==1.9.*
huggingface-hub==0.2.*
datasets==1.16.*
gym==0.21.*
allennlp==2.8.*
nibabel==3.2.*
pydicom==2.2.*
opencv-contrib-python==4.5.*
pybullet==3.2.*
rdflib==6.0.*
owlready2==0.35
gensim==4.1.*
# Biomechanics specific
opensim==4.3
# If available through pip:
# biomechanical-toolkit==0.4.*
# vicon-nexus-api==2.12.*
# qualisys-python-sdk==2.*
pyomeca==0.5.*
# btk==0.3.*
ezc3d==1.4.*
mujoco-py==2.1.*

# Added requirements for LLM components
fastapi==0.95.*
uvicorn==0.22.*
pydantic==1.10.*
nltk==3.8.*
biom-format==2.1.*
sentencepiece==0.1.*
accelerate==0.19.*
tiktoken==0.4.*
optimum==1.8.*
bitsandbytes==0.40.*
einops==0.6.*
sacremoses==0.0.53
kaggle==1.5.*
flask==2.3.*
gunicorn==20.1.*
requests==2.30.*
python-dotenv==1.0.*

# Added requirements for academic paper processing
PyMuPDF==1.21.*
tabula-py==2.7.*
pytesseract==0.3.*

# Added requirements for environmental data collection
geopy==2.3.*
timezonefinder==6.2.*
folium==0.14.*

# Added requirements for knowledge distillation
openai==1.3.*
anthropic==0.5.*
python-dotenv==1.0.*