docs: update progress and feature guides

Author: JasonWarrenUK

docs/dev/ref/implementation/schema-validation.md renamed to docs/dev/feature-guides/metis/schema-validation.md

@@ -13,11 +13,9 @@
 > This tasklist does not include upcoming [MVP Milestones](docs/dev/roadmap/Metis-MVP.md#2-mvp-milestones)
 
 ### 1.1. Open Tasks
-
 #### 1.1.1. Due Tasks
 
 #### 1.1.2. Other Tasks
-
 - [ ] 1.1.2.1. Add boilerplate module text after generation
 - [ ] 1.1.2.2. Add different metadata changelog varieties to distinguish between initial AI creation, AI update of human creation, AI update or AI creation etc
 - [ ] 1.1.2.3. Ensure module generation adheres to tech stack requirements
@@ -38,13 +36,11 @@
   - 1.1.2.4.2. Should apply in both Metis and Metis-in-Themis
 
 ### 1.2. Blocked Tasks
-
 <!-- No Blocked Tasks -->
 
 ---
 
 ## 2. MVP Milestones
-
 - [ ] 2.1. Allow user to choose granularity/detail level of module generation
   - 2.1.1. For example, separate booleans at appropriate stage for project briefs, twists, research topics etc
   - 2.1.2. After generation pass complete, allow user to either progress with existing detail or fill in missing detail levels
@@ -62,7 +58,6 @@
 ---
 
 ## 3. Beyond MVP: Future Features
-
 - [ ] Comparison view (original vs. generated with diff)
 - [-] Update confidence scoring
 - [ ] Multiple generation variants
@@ -77,9 +72,7 @@
 ---
 
 ## 4. Work Record
-
 ### 4.1. Completed Milestones
-
 - 4.1.1. LangChain + Claude Integration
   - Create API route: `src/routes/api/generate/+server.ts`
   - LangChain's `ChatAnthropic` for Claude integration
@@ -144,11 +137,9 @@
   - **Why:** UX polish that makes the tool feel coherent.
 
 ### 4.2. Completed Tasks
-
 #### 4.2.1. Record of Past Deadlines
 
 #### 4.2.2. Record of Other Completed Tasks
-
 - [x] 1.1.2.2. Display streaming response in UI via a scrolling/ephemeral window ✅ COMPLETED
   - SSE (Server-Sent Events) implementation with `progressMessages` array
   - Real-time streaming feedback in `.progress-log` component (src/routes/metis/update/+page.svelte:710-719)
@@ -164,15 +155,12 @@
   - Consistent visual pattern with Themis six-step workflow
 
 ##### 4.2.2.1. Metis Documentation
-
 - [x] Add instructions for including an Anthropic API key in `README.md`
 
 ##### 4.2.2.2. Metis: Input Schema
-
 - [x] Update input xml validator to allow attributes in root elements
 
 ##### 4.2.2.3. Metis: Prompt Template
-
 - [x] Steer Claude towards better Twists
       - Added ProjectTwistGuidelines explaining twists as conceptual curveballs, not technical features
       - Included good examples: "The Helpful Saboteur", "The Unreliable Narrator", "The Contrarian", etc.
@@ -183,7 +171,6 @@
 - [x] Change xml output format to use self-closing tags & attributes
 
 ##### 4.2.2.4. Metis: Response, Output Schema & Export
-
 - [x] Update schema files in to match `~/src/data/templates/outputSchema.xml`
       - Updated schemaTemplate.ts to include missing <Importance> field in AdditionalSkills section
       - Ensures schema consistency between template and outputSchema.xml

docs/dev/ref/implementation/theia-course-upload.md renamed to docs/dev/feature-guides/theia/course-upload.md

@@ -20,7 +20,6 @@
 #### 1a1. Due Tasks
 
 #### 1a2. Other Tasks
-
 - [ ] 1a2a. Steer model towards British English in content generation
 - [ ] 1a2b. Add dark mode to UI
   - Should allow user to select light, dark or system
@@ -36,29 +35,27 @@
 - [ ] 1a2g. Research and implement different models for each separate LangChain AI call
 - [ ] 1a2h. Ensure components use the palette from their native workflow
   Regardless of current route, module generation is part of Metis; using a `/themis` route should show themis' palette, but individual modules that display within the page should have metis' palette applied. Eventually this will apply Tethys to arcs in themis as well.
+- [ ] 1a2i. Move module code from `/api/themis/module` to `/api/metis/*`
 
 ### 1b. Blocked Tasks
+<!-- No blocked tasks -->
 
 ---
 
 ## 2. MVP Milestones
-
 - [ ] 2a. Implement Themis-style Theia previews for Metis (and Metis-in-Themis)
 - [ ] 2b. Address all ARIA violations
 - [ ] 2c. Update all Svelte legacy approaches and implementations to use Svelte 5
 
 ---
 
 ## 3. Beyond MVP: Future Features
-
 - [ ] 3a. Allow defining custom research domains; this supports future generalisation of tool beyond AI engineering contexts
 
 ---
 
 ## 4. Work Record
-
 ### 4a. Completed Milestones
-
 - [x] 4a1. Architectural Refactoring (2025-10-20) ✅ COMPLETED
   - **Branch:** `feat/new-course-generation`
   - **Commits:** `fea0d91` through `496d44f`
@@ -109,11 +106,9 @@
     - Reference: `src/lib/styles/palettes.css` (static documentation)
 
 ### 4b. Completed Tasks
-
 #### 4b1. Record of Past Deadlines
 
 #### 4b2. Record of Other Completed Tasks
-
 - [x] 4b2a. Create an xml output sanitiser
   - Completed via xmlCleaner.ts and responseParser.ts
 - [x] 4b2b. Create colour palettes for Rhea, Themis, Tethys, Metis, and Theia based on their icons

docs/dev/feature-guides/themis/module-coherence-continuation.md

@@ -14,6 +14,7 @@
 #### 1.1.2. Other Tasks
 
 ### 1.2. Blocked Tasks
+<!-- No blocked tasks -->
 
 ---
 

docs/dev/roadmap/Metis-MVP.md

@@ -12,7 +12,6 @@
 > This tasklist does not include upcoming [MVP Milestones](docs/dev/roadmap/Thalassa-MVP.md#2-mvp-milestones)
 
 ### 1.1. Open Tasks
-
 #### 1.1.1. Due Tasks
 
 #### 1.1.2. Other Tasks
@@ -30,11 +29,9 @@
 ---
 
 ## 4. Work Record
-
 ### 4.1. Completed Milestones
 
 ### 4.2. Completed Tasks
-
 #### 4.2.1. Record of Past Deadlines
 
 #### 4.2.2. Record of Other Completed Tasks

docs/dev/roadmap/Rhea-MVP.md

@@ -9,27 +9,23 @@
 ---
 
 ## 1. Tasks
-
 > [!NOTE]
 > This tasklist does not include upcoming [MVP Milestones](docs/dev/roadmap/Theia-MVP.md#2-mvp-milestones)
 
 ### 1.1. Open Tasks
-
 #### 1.1.1. Due Tasks
-
 #### 1.1.2. Other Tasks
-
 - [ ] 1.1.2.2. Add PDF export format (currently marked "coming soon" in UI)
 - [ ] 1.1.2.3. Add export analytics/usage tracking
 - [ ] 1.1.2.4. Implement Module XML upload & workflow resume functionality (see section 2.1.1)
   - Note: JSON course upload is complete; Module XML upload deferred to XML phase
 
 ### 1.2. Blocked Tasks
+<!-- No blocked tasks -->
 
 ---
 
 ## 2. MVP Milestones
-
 - [ ] 2.1. JSON/XML Upload & Workflow Resume — IN PROGRESS
   - **Dependencies:** None for JSON upload (✅ complete), Themis course XML schema for XML upload
   - **Objective:** Enable users to upload previously generated files and either continue work in the original workflow or preview/export them standalone.
@@ -66,7 +62,6 @@
 ---
 
 ## 3. Beyond MVP: Future Features
-
 - [ ] 3.1. Export Formats
   - [ ] PDF generation with custom styling
   - [ ] JSON export for programmatic consumption
@@ -91,7 +86,6 @@
 ## 4. Work Record
 
 ### 4.1. Completed Milestones
-
 - [x] 4.1.1. Core Export Functionality ✅ COMPLETED (2025-10-23)
   **Branch:** `feat/theia`
   **PR:** #14
@@ -177,7 +171,6 @@
 #### 4.2.1. Record of Past Deadlines
 
 #### 4.2.2. Record of Other Completed Tasks
-
 - [x] 4.2.2.1. When file is uploaded, UI should navigate to correct step automatically ✅ COMPLETED
   - CourseStructureUpload.svelte (lines 123-127) dispatches `courseUploaded` event with course data
   - Parent component auto-redirects after successful JSON validation
@@ -193,7 +186,6 @@
 ---
 
 ## 5. Success Criteria
-
 - [ ] Users can upload valid module XML
 - [ ] Successful workflow continuation with pre-populated data
 - [ ] Validation errors are clear and actionable

docs/dev/roadmap/Tethys-MVP.md

@@ -65,6 +65,7 @@
 - [ ] 1.1.2.18. Allow multiple toggles to be open/closed without being affected by siblings
 
 ### 1.2. Blocked Tasks
+<!-- No blocked tasks -->
 
 ---