diff --git a/Dockerfile b/Dockerfile index 842c1769d..473576ad4 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,41 +1,9 @@ -FROM ubuntu +FROM continuumio/anaconda3 -RUN apt-get update -RUN apt-get install -y libglib2.0-0 -RUN apt-get install -y git wget -RUN apt-get install bzip2 -RUN apt-get install -y gcc -RUN apt-get install -y g++ -RUN apt-get install -y libgtk2.0-0 -RUN apt-get install -y xvfb -RUN export MINICONDA=$HOME/miniconda -RUN export PATH="$MINICONDA/bin:$PATH" -RUN hash -r -RUN wget -q https://3230d63b5fc54e62148e-c95ac804525aac4b6dba79b00b39d1d3.ssl.cf1.rackcdn.com/Anaconda2-2.5.0-Linux-x86_64.sh -O anaconda.sh -# RUN bash anaconda.sh -b -p $ANACONDA -RUN bash anaconda.sh -p /anaconda -b -ENV PATH=/anaconda/bin:${PATH} RUN conda config --set always_yes yes RUN conda update --yes conda -RUN conda info -a -RUN CONDA_SSL_VERIFY=false conda update pyopenssl -# RUN conda install -c menpo opencv3=3.1.0 -# RUN conda install -c cvxgrp cvxpy -# RUN conda install -c https://conda.anaconda.org/conda-forge tifffile -# RUN git clone --recursive -b agiovann-master https://github.com/valentina-s/Constrained_NMF.git -# RUN git clone --recursive https://github.com/agiovann/Constrained_NMF.git -# RUN git clone --recursive -b dev https://github.com/agiovann/Constrained_NMF.git -ADD . /CaImAn -WORKDIR /CaImAn/ -RUN conda env update -f environment.yml -n root -#RUN conda install --file requirements_conda.txt -#RUN pip install -r requirements_pip.txt -RUN apt-get install libc6-i386 -RUN apt-get install -y libsm6 libxrender1 -RUN conda install pyqt=4.11.4 -RUN python setup.py install -RUN python setup.py build_ext -i +RUN apt-get install -y gcc g++ libgl1 +RUN mkdir src && cd src && git clone -b dev https://github.com/flatironinstitute/CaImAn.git && cd CaImAn && conda env create -n caiman -f environment.yml && conda install --override-channels -c conda-forge -n caiman pip +RUN /bin/bash -c "cd src/CaImAn && source activate caiman && /opt/conda/envs/caiman/bin/pip install ." +RUN /bin/bash -c "source activate caiman && caimanmanager.py install" -# RUN nosetests - -EXPOSE 8080