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Macdot3 opened this issue Feb 12, 2024 · 0 comments
Open

./CSA error: free(): invalid next size (fast) #1

Macdot3 opened this issue Feb 12, 2024 · 0 comments

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@Macdot3
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Macdot3 commented Feb 12, 2024

Hi Francisco,
I’m working and studying on macrodeletion of peculiar mtDNA sequences. I’m writing to you because I encountered a iusse while running CSAtool.
This is my command and report:

[barresi.m@login01:~$](mailto:barresi.m@login01:~$)   ./CSA  /home/Multi_fasta.txt
[ Multiple Circular Sequence Aligner v1.11 ]
> Loading sequences from file </home/Multi_fasta.txt> ... (179338 bytes)
# 01 [NC_012920.1                             ] OK (20726 characters)
# 02 [rCRS                                    ] OK (17658 characters)
# 03 [rCRS                                    ] OK (20710 characters)
# 04 [rCRS                                    ] OK (16922 characters)
# 05 [rCRS                                    ] OK (17844 characters)
# 06 [rCRS                                    ] OK (19390 characters)
# 07 [rCRS                                    ] OK (16765 characters)
# 08 [rCRS                                    ] OK (23732 characters)
# 09 [rCRS                                    ] OK (24893 characters)
> 9 sequences successfully loaded
> Building generalized cyclic suffix tree.........
> Collecting maximum common subsequences... 2665 nodes found
> Removing suffixes... 2211 nodes left
> Removing repeats... 1 nodes left
> Connecting block chains... 1 chains found
> Length, sequence and rotations for the first 20 longest block chains:
:: (7) GCTGGTA
> Preparing tree for alignment..... ok
> Running multiple sequence alignment...
[(16758-24886)......free(): invalid next size (fast)
Aborted (core dumped)

What’s free(): invalid next size (fast) ? Maybe it’s due to the way I formatted the sequences?

I hope you can help me.

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