From d173acee7d45cee628e6e58f950f9849c2891c0e Mon Sep 17 00:00:00 2001 From: "WU.cloud" Date: Fri, 26 Oct 2018 19:16:31 +0200 Subject: [PATCH] Tag first version --- 2018.10.26/Dockerfile | 112 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 112 insertions(+) create mode 100644 2018.10.26/Dockerfile diff --git a/2018.10.26/Dockerfile b/2018.10.26/Dockerfile new file mode 100644 index 0000000..b7a5223 --- /dev/null +++ b/2018.10.26/Dockerfile @@ -0,0 +1,112 @@ +FROM rocker/rstudio:3.5.1 +MAINTAINER "Victor Maus" victor.maus@wu.ac.at + +RUN apt-get update \ + && apt-get install -y --no-install-recommends \ + ## Dependencies from rocker/geospatial + lbzip2 \ + libbz2-dev \ + libfftw3-dev \ + libgdal-dev \ + libgeos-dev \ + libgsl0-dev \ + libgl1-mesa-dev \ + libglu1-mesa-dev \ + libhdf4-alt-dev \ + libhdf5-dev \ + libjq-dev \ + liblwgeom-dev \ + libproj-dev \ + libprotobuf-dev \ + libnetcdf-dev \ + libsqlite3-dev \ + libssl-dev \ + libudunits2-dev \ + netcdf-bin \ + protobuf-compiler \ + tk-dev \ + unixodbc-dev \ + ## Additional dependencies + libnlopt-dev \ + libv8-3.14-dev \ + libcairo2-dev \ + libgit2-dev \ + r-cran-openssl \ + r-base-dev \ + r-cran-rjava \ + liblzma-dev \ + openjdk-8-jre \ + openjdk-8-jdk \ + libpcre3-dev \ + && R CMD javareconf \ + && install2.r --error \ + BiocManager \ + ## from bioconductor + && R -e "BiocManager::install('rhdf5', ask = FALSE)" \ + && install2.r --error \ + ## R packages from rocker/geospatial + RColorBrewer \ + RandomFields \ + RNetCDF \ + classInt \ + deldir \ + gstat \ + hdf5r \ + lidR \ + mapdata \ + maptools \ + mapview \ + ncdf4 \ + proj4 \ + raster \ + rgdal \ + rgeos \ + rlas \ + sf \ + sp \ + spacetime \ + spatstat \ + spdep \ + geoR \ + geosphere \ + ## Additional R packages + devtools \ + roxygen2 \ + RSelenium \ + rlist \ + ggthemes \ + ggmosaic \ + viridis \ + XLConnect \ + ckanr \ + ggrepel \ + ggmap \ + kableExtra \ + countrycode \ + gsubfn \ + rmapshaper \ + readODS \ + caret \ + RWeka \ + config \ + dendextend \ + ensurer \ + dtw \ + dtwclust \ + dtwSat \ + reticulate \ + gbm \ + keras \ + kohonen \ + imputeTS \ + log4r \ + openxlsx \ + ranger \ + signal \ + wtss \ + comtradr \ + xlsx \ + captioner \ + stargazer + +