Fix P2/P3 rerun-example follow-up beads + version bumps (#168)

* fix: crate-bump

* fix: bump

* fix: resolve P2/P3 rerun-example follow-up beads

- Fix rerun example imports (ferritin_bevy + load_model) so it compiles
  after the ferritin-structure-mesh -> ferritin-bevy rename (ferritin-3g7,
  a P1 blocker for ferritin-s0s below)
- Add CI cargo-check coverage for all-targets, rerun-gated ferritin-bevy,
  and the rerun example itself (gated to push-to-main, since it pulls
  re_viewer) so this class of regression fails CI instead of only
  appearing in the editor (ferritin-s0s)
- Purge remaining ferritin-structure-mesh references: drop the empty
  crate shell dir, stale .gitignore entry, stale deps.txt dump, and fix
  dead links in crates/Readme.md and docs/index.qmd (ferritin-eop)
- Add .vscode/settings.json enabling the 'rerun' cargo feature for
  rust-analyzer so it stops reporting phantom unresolved-import errors
  on the rerun example (ferritin-5n5)

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Sonnet 5 <noreply@anthropic.com>

Author: zachcp

.beads/interactions.jsonl

@@ -142,3 +142,7 @@
 {"id":"int-83b2e5f83d403908d2ee71bb333b941f","kind":"field_change","created_at":"2026-07-19T14:40:53.917458Z","actor":"Zachary Charlop-Powers","issue_id":"ferritin-u87","extra":{"field":"status","new_value":"closed","old_value":"in_progress","reason":"Implemented and verified with ferritin-core tests plus workspace build/check."}}
 {"id":"int-af12d48842ab6a3216edc7d4d58d5051","kind":"field_change","created_at":"2026-07-19T14:40:54.250833Z","actor":"Zachary Charlop-Powers","issue_id":"ferritin-tnk","extra":{"field":"status","new_value":"closed","old_value":"in_progress","reason":"Implemented and verified with ferritin-core tests plus workspace build/check."}}
 {"id":"int-f2145e92e068399b9d68ca646e5d2306","kind":"field_change","created_at":"2026-07-19T15:12:17.20407Z","actor":"Zachary Charlop-Powers","issue_id":"ferritin-229","extra":{"field":"status","new_value":"closed","old_value":"in_progress","reason":"Implemented and verified zero-copy biological and crystallographic symmetry expansion in ferritin-core."}}
+{"id":"int-c9b5d4f4fb5da3d9bbf631c49625026b","kind":"field_change","created_at":"2026-08-29T17:21:37.638323Z","actor":"Zachary Charlop-Powers","issue_id":"ferritin-3g7","extra":{"field":"status","new_value":"closed","old_value":"in_progress","reason":"Fixed imports: ferritin_bevy::{ColorScheme,RenderOptions,Structure,ToRerun}, ferritin_core::load_model. Verified with cargo check -p ferritin-examples --features rerun --example rerun (clean compile)."}}
+{"id":"int-248fefa9897b912e79c5c3406041d3c3","kind":"field_change","created_at":"2026-08-29T17:21:59.966216Z","actor":"Zachary Charlop-Powers","issue_id":"ferritin-s0s","extra":{"field":"status","new_value":"closed","old_value":"in_progress","reason":"Added three cargo check steps to .github/workflows/tests.yaml: (1) cargo check --workspace --all-targets on every run, (2) cargo check -p ferritin-bevy --features rerun on every run (both verified locally, warnings only), (3) cargo check -p ferritin-examples --features rerun --example rerun gated to push-to-main only since it pulls re_viewer (~10min cold), per the tradeoff noted in the bead."}}
+{"id":"int-2b509df3d74e1e4e8d2eb38b250aa018","kind":"field_change","created_at":"2026-08-29T17:23:35.426357Z","actor":"Zachary Charlop-Powers","issue_id":"ferritin-eop","extra":{"field":"status","new_value":"closed","old_value":"in_progress","reason":"Deleted empty crates/ferritin-structure-mesh/ shell dir; removed deps.txt (stale generated dump, unreferenced); dropped .gitignore line for the removed dir; fixed crates/Readme.md:31 link to ./ferritin-bevy; fixed docs/index.qmd heading + both dead URLs (rust-docs and source, updated source path to crates/ferritin-bevy). Remaining structure-mesh references are in justfile (owned by separate P1 bead ferritin-nzn) and one historical string in .claude/settings.local.json, both explicitly out of scope."}}
+{"id":"int-8dc4d2960f8a0114e61f81355a8b5712","kind":"field_change","created_at":"2026-08-29T17:24:00.814139Z","actor":"Zachary Charlop-Powers","issue_id":"ferritin-5n5","extra":{"field":"status","new_value":"closed","old_value":"in_progress","reason":"Added .vscode/settings.json with rust-analyzer.cargo.features:[\"rerun\"] so the analyzer resolves rerun/ColorScheme/RenderOptions/etc. in the rerun example instead of reporting phantom unresolved-import errors. Accepted the cold-build cost per the bead's tradeoff discussion since it only affects opt-in editor analysis, not CI. .idea/workspace.xml's stale feature names need no cleanup: .idea/ is already git-ignored (.gitignore:3) and was never tracked (confirmed via git ls-files), so it carries no repo-visible staleness."}}

.github/workflows/tests.yaml

@@ -31,5 +31,15 @@ jobs:
       - name: Run Build
         run: cargo build
 
+      - name: Check all targets (examples, tests, benches)
+        run: cargo check --workspace --all-targets
+
+      - name: Check rerun-gated code
+        run: cargo check -p ferritin-bevy --features rerun
+
+      - name: Check rerun example
+        if: github.event_name == 'push' && github.ref == 'refs/heads/main'
+        run: cargo check -p ferritin-examples --features rerun --example rerun
+
       - name: Run tests
         run: cargo test --verbose

.gitignore

@@ -4,7 +4,6 @@
 .DS_Store
 
 
-crates/ferritin-structure-mesh/wasm-examples/
 docs/doc
 
 # Beads / Dolt files (added by bd init)

.vscode/settings.json

@@ -0,0 +1,3 @@
+{
+  "rust-analyzer.cargo.features": ["rerun"]
+}

crates/Readme.md

@@ -28,7 +28,7 @@ PLMs (Protein Language Models) integration for ferritin.
 
 Cell visualization and analysis tools for ferritin.
 
-## [ferritin-bevy](./ferritin-structure-mesh)
+## [ferritin-bevy](./ferritin-bevy)
 
 Bevy game engine integration for ferritin.
 

crates/ferritin-examples/examples/rerun/main.rs

@@ -1,7 +1,7 @@
 use anyhow::Result;
 use bevy::prelude::*;
-use ferritin_core::load_structure;
-use ferritin_structure_mesh::{ColorScheme, RenderOptions, Structure, ToRerun};
+use ferritin_bevy::{ColorScheme, RenderOptions, Structure, ToRerun};
+use ferritin_core::load_model;
 use ferritin_test_data::TestFile;
 use rerun::Mesh3D;
 
@@ -12,7 +12,7 @@ fn main() -> Result<()> {
 
     // Load the structure
     let (molfile, _handle) = TestFile::protein_01().create_temp()?;
-    let ac = load_structure(molfile)?;
+    let ac = load_model(molfile)?;
 
     // Define a few materials
     let chalky = StandardMaterial {