To generate interactive html reports with fastqc-rs, simply pass the path to your fastq file with -q and capture the generated html file from stdout.
fqc -q path/to/my_sequence.fastq > report.html
Arguments:
| Parameter | Default | Description |
|---|---|---|
| -q --fastq | - | The path to the FASTQ file to use |
| -k | 5 | The length k of k-mers for k-mer counting |
| -s --summary | - | Creates an output file for usage with MultiQC under the given path |