Files

 main

/

man

/

Copy path

Directory actions

More options

Directory actions

More options

Latest commit

Evan Holmes

Updated volcano plot data points to be interactive

Aug 26, 2022

7d7bf1b · Aug 26, 2022

History

History

This branch is 129 commits ahead of michaelsilverstein/BatchQC:main.

/

man

/

Top

Folders and files

Name		Name	Last commit message	Last commit date
parent directory ..
.DS_Store		.DS_Store	Created directory titled 'examples' in the R directory for function e…	Jun 13, 2022
BatchQC.Rd		BatchQC.Rd	corrected problematic spacing in YAML	Jun 7, 2022
DE_analyze.Rd		DE_analyze.Rd	Added functionality to add covariates to DE analysis design matrix. A…	Aug 2, 2022
EV_plotter.Rd		EV_plotter.Rd	Variation page, with a few bugs	Mar 9, 2021
EV_table.Rd		EV_table.Rd	Corrected wrong placement of id.vars in EV_plotter function; fixed li…	Apr 28, 2022
PCA_plotter.Rd		PCA_plotter.Rd	Fixed PCA graphs so that all metadata columns are discrete variables …	Jun 23, 2022
batch_correct.Rd		batch_correct.Rd	corrected problematic spacing in YAML	Jun 7, 2022
batch_design.Rd		batch_design.Rd	Standardizing variable and function names	Mar 30, 2021
batch_pval_plotter.Rd		batch_pval_plotter.Rd	Added functionality to add covariates to DE analysis design matrix. A…	Aug 2, 2022
batchqc_explained_variation.Rd		batchqc_explained_variation.Rd	Allows for multiple covariates. Keep rownames in table.	Mar 22, 2021
batchqc_f.pvalue.Rd		batchqc_f.pvalue.Rd	Fxn clean up, documentation	Mar 10, 2021
confound_metrics.Rd		confound_metrics.Rd	Make code more readable	May 4, 2022
cor_props.Rd		cor_props.Rd	First commit of edits to make this into a working package	Feb 24, 2021
covariate_pval_plotter.Rd		covariate_pval_plotter.Rd	Added functionality to add covariates to DE analysis design matrix. A…	Aug 2, 2022
covariates_not_confounded.Rd		covariates_not_confounded.Rd	Covariate table updates with only options not confounded with batch	Mar 12, 2021
cramers_v.Rd		cramers_v.Rd	Fix check and build errors	Apr 29, 2022
dendrogram_plotter.Rd		dendrogram_plotter.Rd	Updated dendrogram visualizations, differential expression analysis v…	Jun 24, 2022
heatmap_plotter.Rd		heatmap_plotter.Rd	Fix check and build errors	Apr 29, 2022
normalize_SE.Rd		normalize_SE.Rd	Updated code so that only 1 counts and metadata file appears at a tim…	Jun 8, 2022
plot_data.Rd		plot_data.Rd	Fixed PCA graphs so that all metadata columns are discrete variables …	Jun 23, 2022
preprocess.Rd		preprocess.Rd	Updated code so that only 1 counts and metadata file appears at a tim…	Jun 8, 2022
process_dendrogram.Rd		process_dendrogram.Rd	Updated dendrogram visualizations, differential expression analysis v…	Jun 24, 2022
protein_data.Rd		protein_data.Rd	Added example data functionality; updated metadata table to show actu…	Jun 6, 2022
protein_sample_info.Rd		protein_sample_info.Rd	Added example data functionality; updated metadata table to show actu…	Jun 6, 2022
pval_summary.Rd		pval_summary.Rd	Added functionality to add covariates to DE analysis design matrix. A…	Aug 2, 2022
std_pearson_corr_coef.Rd		std_pearson_corr_coef.Rd	Fix check and build errors	Apr 29, 2022
summarized_experiment.Rd		summarized_experiment.Rd	Updated code so that only 1 counts and metadata file appears at a tim…	Jun 8, 2022
volcano_plot.Rd		volcano_plot.Rd	Updated volcano plot data points to be interactive	Aug 26, 2022
View all files