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Copy pathGalaxy75_Collapsed_Output.tabular.txt
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Galaxy75_Collapsed_Output.tabular.txt
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Sample CHROM POS REF ALT QUAL DP AF SB DP4 EFF[*].IMPACT EFF[*].FUNCLASS EFF[*].EFFECT EFF[*].GENE EFF[*].CODON
SRR15315457 NC_045512.2 86 G C 116.0 1946 0.005653 0 1548,386,9,2 MODIFIER NONE intergenic_region CHR_START-ORF1ab n.86G>C
SRR15315457 NC_045512.2 104 TG T 552.0 2371 0.011809 1 1858,499,21,7 MODIFIER NONE intergenic_region CHR_START-ORF1ab n.105delG
SRR15315457 NC_045512.2 227 G A 168.0 3150 0.005079 1 1676,1454,11,7 MODIFIER NONE intergenic_region CHR_START-ORF1ab n.227G>A
SRR15315457 NC_045512.2 237 G GT 120.0 3337 0.005993 0 1727,1634,10,10 MODIFIER NONE intergenic_region CHR_START-ORF1ab n.237_238insT
SRR15315457 NC_045512.2 241 C T 49314.0 3307 0.954642 0 0,0,1680,1624 MODIFIER NONE intergenic_region CHR_START-ORF1ab n.241C>T
SRR15315457 NC_045512.2 323 GT G 57.0 3711 0.001347 1 1781,1959,3,2 HIGH NONE frameshift_variant ORF1ab c.62delT
SRR15315457 NC_045512.2 323 GT G 57.0 3711 0.001347 1 1781,1959,3,2 HIGH NONE frameshift_variant ORF1ab c.62delT
SRR15315457 NC_045512.2 323 GT G 57.0 3711 0.001347 1 1781,1959,3,2 HIGH NONE frameshift_variant ORF1ab c.62delT
SRR15315457 NC_045512.2 323 GT G 57.0 3711 0.001347 1 1781,1959,3,2 HIGH NONE frameshift_variant ORF1ab c.62delT
SRR15315457 NC_045512.2 422 TTAG T 439.0 5176 0.005023 0 3919,1275,19,7 MODERATE NONE disruptive_inframe_deletion ORF1ab c.161_163delTAG
SRR15315457 NC_045512.2 422 TTAG T 439.0 5176 0.005023 0 3919,1275,19,7 MODERATE NONE disruptive_inframe_deletion ORF1ab c.161_163delTAG
SRR15315457 NC_045512.2 422 TTAG T 439.0 5176 0.005023 0 3919,1275,19,7 MODERATE NONE disruptive_inframe_deletion ORF1ab c.161_163delTAG
SRR15315457 NC_045512.2 422 TTAG T 439.0 5176 0.005023 0 3919,1275,19,7 MODERATE NONE disruptive_inframe_deletion ORF1ab c.161_163delTAG
SRR15315457 NC_045512.2 435 A G 86.0 5421 0.002583 1 4010,1388,10,4 MODERATE NONE missense_variant ORF1ab c.170A>G
SRR15315457 NC_045512.2 435 A G 86.0 5421 0.002583 1 4010,1388,10,4 MODERATE NONE missense_variant ORF1ab c.170A>G
SRR15315457 NC_045512.2 435 A G 86.0 5421 0.002583 1 4010,1388,10,4 MODERATE NONE missense_variant ORF1ab c.170A>G
SRR15315457 NC_045512.2 435 A G 86.0 5421 0.002583 1 4010,1388,10,4 MODERATE NONE missense_variant ORF1ab c.170A>G
SRR15315457 NC_045512.2 504 CTCATGG C 253.0 8796 0.00216 0 4659,4261,10,9 MODERATE NONE disruptive_inframe_deletion ORF1ab c.245_250delGTCATG
SRR15315457 NC_045512.2 504 CTCATGG C 253.0 8796 0.00216 0 4659,4261,10,9 MODERATE NONE disruptive_inframe_deletion ORF1ab c.245_250delGTCATG
SRR15315457 NC_045512.2 504 CTCATGG C 253.0 8796 0.00216 0 4659,4261,10,9 MODERATE NONE disruptive_inframe_deletion ORF1ab c.245_250delGTCATG
SRR15315457 NC_045512.2 504 CTCATGG C 253.0 8796 0.00216 0 4659,4261,10,9 MODERATE NONE disruptive_inframe_deletion ORF1ab c.245_250delGTCATG
SRR15315457 NC_045512.2 505 T C 141.0 8961 0.002232 4 4595,4316,13,8 LOW NONE synonymous_variant ORF1ab c.240T>C
SRR15315457 NC_045512.2 505 T C 141.0 8961 0.002232 4 4595,4316,13,8 LOW NONE synonymous_variant ORF1ab c.240T>C
SRR15315457 NC_045512.2 505 T C 141.0 8961 0.002232 4 4595,4316,13,8 LOW NONE synonymous_variant ORF1ab c.240T>C
SRR15315457 NC_045512.2 505 T C 141.0 8961 0.002232 4 4595,4316,13,8 LOW NONE synonymous_variant ORF1ab c.240T>C
SRR15315457 NC_045512.2 512 CATGTT C 482.0 8887 0.003601 9 4445,4485,11,21 HIGH NONE frameshift_variant ORF1ab c.251_255delTTATG
SRR15315457 NC_045512.2 512 CATGTT C 482.0 8887 0.003601 9 4445,4485,11,21 HIGH NONE frameshift_variant ORF1ab c.251_255delTTATG
SRR15315457 NC_045512.2 512 CATGTT C 482.0 8887 0.003601 9 4445,4485,11,21 HIGH NONE frameshift_variant ORF1ab c.251_255delTTATG
SRR15315457 NC_045512.2 512 CATGTT C 482.0 8887 0.003601 9 4445,4485,11,21 HIGH NONE frameshift_variant ORF1ab c.251_255delTTATG
SRR15315457 NC_045512.2 517 TATG T 305.0 8883 0.002477 0 4422,4604,11,11 MODERATE NONE conservative_inframe_deletion ORF1ab c.253_255delATG
SRR15315457 NC_045512.2 517 TATG T 305.0 8883 0.002477 0 4422,4604,11,11 MODERATE NONE conservative_inframe_deletion ORF1ab c.253_255delATG
SRR15315457 NC_045512.2 517 TATG T 305.0 8883 0.002477 0 4422,4604,11,11 MODERATE NONE conservative_inframe_deletion ORF1ab c.253_255delATG
SRR15315457 NC_045512.2 517 TATG T 305.0 8883 0.002477 0 4422,4604,11,11 MODERATE NONE conservative_inframe_deletion ORF1ab c.253_255delATG
SRR15315457 NC_045512.2 612 T G 310.0 6152 0.005039 5 2050,4065,14,18 MODERATE NONE missense_variant ORF1ab c.347T>G
SRR15315457 NC_045512.2 612 T G 310.0 6152 0.005039 5 2050,4065,14,18 MODERATE NONE missense_variant ORF1ab c.347T>G
SRR15315457 NC_045512.2 612 T G 310.0 6152 0.005039 5 2050,4065,14,18 MODERATE NONE missense_variant ORF1ab c.347T>G
SRR15315457 NC_045512.2 612 T G 310.0 6152 0.005039 5 2050,4065,14,18 MODERATE NONE missense_variant ORF1ab c.347T>G
SRR15315457 NC_045512.2 684 TA T 162.0 5442 0.002205 33 1798,3697,10,2 HIGH NONE frameshift_variant ORF1ab c.422delA
SRR15315457 NC_045512.2 684 TA T 162.0 5442 0.002205 33 1798,3697,10,2 HIGH NONE frameshift_variant ORF1ab c.422delA
SRR15315457 NC_045512.2 684 TA T 162.0 5442 0.002205 33 1798,3697,10,2 HIGH NONE frameshift_variant ORF1ab c.422delA
SRR15315457 NC_045512.2 684 TA T 162.0 5442 0.002205 33 1798,3697,10,2 HIGH NONE frameshift_variant ORF1ab c.422delA
SRR15315457 NC_045512.2 685 AAAGTCATTT A 163.0 5430 0.00221 1 1813,3689,3,9 MODERATE NONE conservative_inframe_deletion ORF1ab c.421_429delAAGTCATTT
SRR15315457 NC_045512.2 685 AAAGTCATTT A 163.0 5430 0.00221 1 1813,3689,3,9 MODERATE NONE conservative_inframe_deletion ORF1ab c.421_429delAAGTCATTT
SRR15315457 NC_045512.2 685 AAAGTCATTT A 163.0 5430 0.00221 1 1813,3689,3,9 MODERATE NONE conservative_inframe_deletion ORF1ab c.421_429delAAGTCATTT
SRR15315457 NC_045512.2 685 AAAGTCATTT A 163.0 5430 0.00221 1 1813,3689,3,9 MODERATE NONE conservative_inframe_deletion ORF1ab c.421_429delAAGTCATTT
SRR15315457 NC_045512.2 695 G A 162.0 5085 0.00354 17 1852,3205,13,7 MODERATE NONE missense_variant ORF1ab c.430G>A
SRR15315457 NC_045512.2 695 G A 162.0 5085 0.00354 17 1852,3205,13,7 MODERATE NONE missense_variant ORF1ab c.430G>A
SRR15315457 NC_045512.2 695 G A 162.0 5085 0.00354 17 1852,3205,13,7 MODERATE NONE missense_variant ORF1ab c.430G>A
SRR15315457 NC_045512.2 695 G A 162.0 5085 0.00354 17 1852,3205,13,7 MODERATE NONE missense_variant ORF1ab c.430G>A
SRR15315457 NC_045512.2 733 T C 49314.0 2353 0.977476 0 2,0,1980,370 LOW NONE synonymous_variant ORF1ab c.468T>C
SRR15315457 NC_045512.2 733 T C 49314.0 2353 0.977476 0 2,0,1980,370 LOW NONE synonymous_variant ORF1ab c.468T>C
SRR15315457 NC_045512.2 733 T C 49314.0 2353 0.977476 0 2,0,1980,370 LOW NONE synonymous_variant ORF1ab c.468T>C
SRR15315457 NC_045512.2 733 T C 49314.0 2353 0.977476 0 2,0,1980,370 LOW NONE synonymous_variant ORF1ab c.468T>C
SRR15315457 NC_045512.2 746 T C 97.0 2590 0.003861 1 2072,507,9,1 MODERATE NONE missense_variant ORF1ab c.481T>C
SRR15315457 NC_045512.2 746 T C 97.0 2590 0.003861 1 2072,507,9,1 MODERATE NONE missense_variant ORF1ab c.481T>C
SRR15315457 NC_045512.2 746 T C 97.0 2590 0.003861 1 2072,507,9,1 MODERATE NONE missense_variant ORF1ab c.481T>C
SRR15315457 NC_045512.2 746 T C 97.0 2590 0.003861 1 2072,507,9,1 MODERATE NONE missense_variant ORF1ab c.481T>C
SRR15315457 NC_045512.2 906 CT C 215.0 3312 0.004227 3 1167,2212,3,11 HIGH NONE frameshift_variant ORF1ab c.644delT
SRR15315457 NC_045512.2 906 CT C 215.0 3312 0.004227 3 1167,2212,3,11 HIGH NONE frameshift_variant ORF1ab c.644delT
SRR15315457 NC_045512.2 906 CT C 215.0 3312 0.004227 3 1167,2212,3,11 HIGH NONE frameshift_variant ORF1ab c.104delT
SRR15315457 NC_045512.2 906 CT C 215.0 3312 0.004227 3 1167,2212,3,11 HIGH NONE frameshift_variant ORF1ab c.104delT
SRR15315457 NC_045512.2 929 A T 137.0 2551 0.005096 8 549,1986,6,10 MODERATE NONE missense_variant ORF1ab c.664A>T
SRR15315457 NC_045512.2 929 A T 137.0 2551 0.005096 8 549,1986,6,10 MODERATE NONE missense_variant ORF1ab c.664A>T
SRR15315457 NC_045512.2 929 A T 137.0 2551 0.005096 8 549,1986,6,10 MODERATE NONE missense_variant ORF1ab c.124A>T
SRR15315457 NC_045512.2 929 A T 137.0 2551 0.005096 8 549,1986,6,10 MODERATE NONE missense_variant ORF1ab c.124A>T
SRR15315457 NC_045512.2 967 T C 289.0 3946 0.006589 6 1900,2014,16,10 LOW NONE synonymous_variant ORF1ab c.702T>C
SRR15315457 NC_045512.2 967 T C 289.0 3946 0.006589 6 1900,2014,16,10 LOW NONE synonymous_variant ORF1ab c.702T>C
SRR15315457 NC_045512.2 967 T C 289.0 3946 0.006589 6 1900,2014,16,10 LOW NONE synonymous_variant ORF1ab c.162T>C
SRR15315457 NC_045512.2 967 T C 289.0 3946 0.006589 6 1900,2014,16,10 LOW NONE synonymous_variant ORF1ab c.162T>C
SRR15315457 NC_045512.2 975 A G 89.0 4158 0.002646 26 2185,1959,1,11 MODERATE NONE missense_variant ORF1ab c.710A>G
SRR15315457 NC_045512.2 975 A G 89.0 4158 0.002646 26 2185,1959,1,11 MODERATE NONE missense_variant ORF1ab c.710A>G
SRR15315457 NC_045512.2 975 A G 89.0 4158 0.002646 26 2185,1959,1,11 MODERATE NONE missense_variant ORF1ab c.170A>G
SRR15315457 NC_045512.2 975 A G 89.0 4158 0.002646 26 2185,1959,1,11 MODERATE NONE missense_variant ORF1ab c.170A>G
SRR15315457 NC_045512.2 985 G A 78.0 4553 0.002416 27 2635,1902,12,0 HIGH NONE stop_gained ORF1ab c.720G>A
SRR15315457 NC_045512.2 985 G A 78.0 4553 0.002416 27 2635,1902,12,0 HIGH NONE stop_gained ORF1ab c.720G>A
SRR15315457 NC_045512.2 985 G A 78.0 4553 0.002416 27 2635,1902,12,0 HIGH NONE stop_gained ORF1ab c.180G>A
SRR15315457 NC_045512.2 985 G A 78.0 4553 0.002416 27 2635,1902,12,0 HIGH NONE stop_gained ORF1ab c.180G>A
SRR15315457 NC_045512.2 1085 G T 49314.0 4617 0.97271 0 1,0,2971,1641 MODERATE NONE missense_variant ORF1ab c.820G>T
SRR15315457 NC_045512.2 1085 G T 49314.0 4617 0.97271 0 1,0,2971,1641 MODERATE NONE missense_variant ORF1ab c.820G>T
SRR15315457 NC_045512.2 1085 G T 49314.0 4617 0.97271 0 1,0,2971,1641 MODERATE NONE missense_variant ORF1ab c.280G>T
SRR15315457 NC_045512.2 1085 G T 49314.0 4617 0.97271 0 1,0,2971,1641 MODERATE NONE missense_variant ORF1ab c.280G>T
SRR15315457 NC_045512.2 1090 T C 285.0 4603 0.0063 0 2849,1723,19,11 LOW NONE synonymous_variant ORF1ab c.825T>C
SRR15315457 NC_045512.2 1090 T C 285.0 4603 0.0063 0 2849,1723,19,11 LOW NONE synonymous_variant ORF1ab c.825T>C
SRR15315457 NC_045512.2 1090 T C 285.0 4603 0.0063 0 2849,1723,19,11 LOW NONE synonymous_variant ORF1ab c.285T>C
SRR15315457 NC_045512.2 1090 T C 285.0 4603 0.0063 0 2849,1723,19,11 LOW NONE synonymous_variant ORF1ab c.285T>C
SRR15315457 NC_045512.2 1133 A T 135.0 5184 0.003472 10 2716,2444,16,6 HIGH NONE stop_gained ORF1ab c.868A>T
SRR15315457 NC_045512.2 1133 A T 135.0 5184 0.003472 10 2716,2444,16,6 HIGH NONE stop_gained ORF1ab c.868A>T
SRR15315457 NC_045512.2 1133 A T 135.0 5184 0.003472 10 2716,2444,16,6 HIGH NONE stop_gained ORF1ab c.328A>T
SRR15315457 NC_045512.2 1133 A T 135.0 5184 0.003472 10 2716,2444,16,6 HIGH NONE stop_gained ORF1ab c.328A>T
SRR15315457 NC_045512.2 1135 GAA G 386.0 5129 0.005069 0 2707,2458,14,12 HIGH NONE frameshift_variant ORF1ab c.874_875delAA
SRR15315457 NC_045512.2 1135 GAA G 386.0 5129 0.005069 0 2707,2458,14,12 HIGH NONE frameshift_variant ORF1ab c.874_875delAA
SRR15315457 NC_045512.2 1135 GAA G 386.0 5129 0.005069 0 2707,2458,14,12 HIGH NONE frameshift_variant ORF1ab c.334_335delAA
SRR15315457 NC_045512.2 1135 GAA G 386.0 5129 0.005069 0 2707,2458,14,12 HIGH NONE frameshift_variant ORF1ab c.334_335delAA
SRR15315457 NC_045512.2 1222 T C 545.0 6740 0.007122 1 2469,4218,19,30 LOW NONE synonymous_variant ORF1ab c.957T>C
SRR15315457 NC_045512.2 1222 T C 545.0 6740 0.007122 1 2469,4218,19,30 LOW NONE synonymous_variant ORF1ab c.957T>C
SRR15315457 NC_045512.2 1222 T C 545.0 6740 0.007122 1 2469,4218,19,30 LOW NONE synonymous_variant ORF1ab c.417T>C
SRR15315457 NC_045512.2 1222 T C 545.0 6740 0.007122 1 2469,4218,19,30 LOW NONE synonymous_variant ORF1ab c.417T>C
SRR15315457 NC_045512.2 1263 CG C 328.0 7114 0.003092 13 2449,4735,3,19 HIGH NONE frameshift_variant ORF1ab c.1001delG
SRR15315457 NC_045512.2 1263 CG C 328.0 7114 0.003092 13 2449,4735,3,19 HIGH NONE frameshift_variant ORF1ab c.1001delG
SRR15315457 NC_045512.2 1263 CG C 328.0 7114 0.003092 13 2449,4735,3,19 HIGH NONE frameshift_variant ORF1ab c.461delG
SRR15315457 NC_045512.2 1263 CG C 328.0 7114 0.003092 13 2449,4735,3,19 HIGH NONE frameshift_variant ORF1ab c.461delG
SRR15315457 NC_045512.2 1273 T C 228.0 6773 0.003986 10 2457,4280,6,24 LOW NONE synonymous_variant ORF1ab c.1008T>C
SRR15315457 NC_045512.2 1273 T C 228.0 6773 0.003986 10 2457,4280,6,24 LOW NONE synonymous_variant ORF1ab c.1008T>C
SRR15315457 NC_045512.2 1273 T C 228.0 6773 0.003986 10 2457,4280,6,24 LOW NONE synonymous_variant ORF1ab c.468T>C
SRR15315457 NC_045512.2 1273 T C 228.0 6773 0.003986 10 2457,4280,6,24 LOW NONE synonymous_variant ORF1ab c.468T>C
SRR15315457 NC_045512.2 1427 C T 49314.0 4770 0.970231 0 1,0,2723,2043 MODERATE NONE missense_variant ORF1ab c.1162C>T
SRR15315457 NC_045512.2 1427 C T 49314.0 4770 0.970231 0 1,0,2723,2043 MODERATE NONE missense_variant ORF1ab c.1162C>T
SRR15315457 NC_045512.2 1427 C T 49314.0 4770 0.970231 0 1,0,2723,2043 MODERATE NONE missense_variant ORF1ab c.622C>T
SRR15315457 NC_045512.2 1427 C T 49314.0 4770 0.970231 0 1,0,2723,2043 MODERATE NONE missense_variant ORF1ab c.622C>T
SRR15315457 NC_045512.2 1441 CT C 259.0 4989 0.003407 4 2657,2400,11,6 HIGH NONE frameshift_variant ORF1ab c.1178delT
SRR15315457 NC_045512.2 1441 CT C 259.0 4989 0.003407 4 2657,2400,11,6 HIGH NONE frameshift_variant ORF1ab c.1178delT
SRR15315457 NC_045512.2 1441 CT C 259.0 4989 0.003407 4 2657,2400,11,6 HIGH NONE frameshift_variant ORF1ab c.638delT
SRR15315457 NC_045512.2 1441 CT C 259.0 4989 0.003407 4 2657,2400,11,6 HIGH NONE frameshift_variant ORF1ab c.638delT
SRR15315457 NC_045512.2 1459 T C 181.0 5230 0.003824 0 2441,2766,9,11 LOW NONE synonymous_variant ORF1ab c.1194T>C
SRR15315457 NC_045512.2 1459 T C 181.0 5230 0.003824 0 2441,2766,9,11 LOW NONE synonymous_variant ORF1ab c.1194T>C
SRR15315457 NC_045512.2 1459 T C 181.0 5230 0.003824 0 2441,2766,9,11 LOW NONE synonymous_variant ORF1ab c.654T>C
SRR15315457 NC_045512.2 1459 T C 181.0 5230 0.003824 0 2441,2766,9,11 LOW NONE synonymous_variant ORF1ab c.654T>C
SRR15315457 NC_045512.2 1499 T C 432.0 5042 0.007537 7 2013,2987,20,19 MODERATE NONE missense_variant ORF1ab c.1234T>C
SRR15315457 NC_045512.2 1499 T C 432.0 5042 0.007537 7 2013,2987,20,19 MODERATE NONE missense_variant ORF1ab c.1234T>C
SRR15315457 NC_045512.2 1499 T C 432.0 5042 0.007537 7 2013,2987,20,19 MODERATE NONE missense_variant ORF1ab c.694T>C
SRR15315457 NC_045512.2 1499 T C 432.0 5042 0.007537 7 2013,2987,20,19 MODERATE NONE missense_variant ORF1ab c.694T>C
SRR15315457 NC_045512.2 1702 T C 167.0 5040 0.004167 0 3492,1522,15,7 LOW NONE synonymous_variant ORF1ab c.1437T>C
SRR15315457 NC_045512.2 1702 T C 167.0 5040 0.004167 0 3492,1522,15,7 LOW NONE synonymous_variant ORF1ab c.1437T>C
SRR15315457 NC_045512.2 1702 T C 167.0 5040 0.004167 0 3492,1522,15,7 LOW NONE synonymous_variant ORF1ab c.897T>C
SRR15315457 NC_045512.2 1702 T C 167.0 5040 0.004167 0 3492,1522,15,7 LOW NONE synonymous_variant ORF1ab c.897T>C
SRR15315457 NC_045512.2 1835 G A 177.0 4573 0.004155 2 1453,3092,7,12 MODERATE NONE missense_variant ORF1ab c.1570G>A
SRR15315457 NC_045512.2 1835 G A 177.0 4573 0.004155 2 1453,3092,7,12 MODERATE NONE missense_variant ORF1ab c.1570G>A
SRR15315457 NC_045512.2 1835 G A 177.0 4573 0.004155 2 1453,3092,7,12 MODERATE NONE missense_variant ORF1ab c.1030G>A
SRR15315457 NC_045512.2 1835 G A 177.0 4573 0.004155 2 1453,3092,7,12 MODERATE NONE missense_variant ORF1ab c.1030G>A
SRR15315457 NC_045512.2 1884 C T 98.0 5859 0.00256 7 2181,3657,3,13 MODERATE NONE missense_variant ORF1ab c.1619C>T
SRR15315457 NC_045512.2 1884 C T 98.0 5859 0.00256 7 2181,3657,3,13 MODERATE NONE missense_variant ORF1ab c.1619C>T
SRR15315457 NC_045512.2 1884 C T 98.0 5859 0.00256 7 2181,3657,3,13 MODERATE NONE missense_variant ORF1ab c.1079C>T
SRR15315457 NC_045512.2 1884 C T 98.0 5859 0.00256 7 2181,3657,3,13 MODERATE NONE missense_variant ORF1ab c.1079C>T
SRR15315457 NC_045512.2 1927 T C 232.0 6139 0.004398 33 2997,3112,23,5 LOW NONE synonymous_variant ORF1ab c.1662T>C
SRR15315457 NC_045512.2 1927 T C 232.0 6139 0.004398 33 2997,3112,23,5 LOW NONE synonymous_variant ORF1ab c.1662T>C
SRR15315457 NC_045512.2 1927 T C 232.0 6139 0.004398 33 2997,3112,23,5 LOW NONE synonymous_variant ORF1ab c.1122T>C
SRR15315457 NC_045512.2 1927 T C 232.0 6139 0.004398 33 2997,3112,23,5 LOW NONE synonymous_variant ORF1ab c.1122T>C
SRR15315457 NC_045512.2 1955 A T 172.0 5367 0.003726 9 3150,2195,16,5 HIGH NONE stop_gained ORF1ab c.1690A>T
SRR15315457 NC_045512.2 1955 A T 172.0 5367 0.003726 9 3150,2195,16,5 HIGH NONE stop_gained ORF1ab c.1690A>T
SRR15315457 NC_045512.2 1955 A T 172.0 5367 0.003726 9 3150,2195,16,5 HIGH NONE stop_gained ORF1ab c.1150A>T
SRR15315457 NC_045512.2 1955 A T 172.0 5367 0.003726 9 3150,2195,16,5 HIGH NONE stop_gained ORF1ab c.1150A>T
SRR15315457 NC_045512.2 2074 T C 199.0 4549 0.004616 1 2197,2325,12,10 LOW NONE synonymous_variant ORF1ab c.1809T>C
SRR15315457 NC_045512.2 2074 T C 199.0 4549 0.004616 1 2197,2325,12,10 LOW NONE synonymous_variant ORF1ab c.1809T>C
SRR15315457 NC_045512.2 2074 T C 199.0 4549 0.004616 1 2197,2325,12,10 LOW NONE synonymous_variant ORF1ab c.1269T>C
SRR15315457 NC_045512.2 2074 T C 199.0 4549 0.004616 1 2197,2325,12,10 LOW NONE synonymous_variant ORF1ab c.1269T>C
SRR15315457 NC_045512.2 2088 T C 275.0 4599 0.006088 2 2163,2407,15,13 MODERATE NONE missense_variant ORF1ab c.1823T>C
SRR15315457 NC_045512.2 2088 T C 275.0 4599 0.006088 2 2163,2407,15,13 MODERATE NONE missense_variant ORF1ab c.1823T>C
SRR15315457 NC_045512.2 2088 T C 275.0 4599 0.006088 2 2163,2407,15,13 MODERATE NONE missense_variant ORF1ab c.1283T>C
SRR15315457 NC_045512.2 2088 T C 275.0 4599 0.006088 2 2163,2407,15,13 MODERATE NONE missense_variant ORF1ab c.1283T>C
SRR15315457 NC_045512.2 2205 A T 163.0 3311 0.004832 9 1010,2283,2,15 MODERATE NONE missense_variant ORF1ab c.1940A>T
SRR15315457 NC_045512.2 2205 A T 163.0 3311 0.004832 9 1010,2283,2,15 MODERATE NONE missense_variant ORF1ab c.1940A>T
SRR15315457 NC_045512.2 2205 A T 163.0 3311 0.004832 9 1010,2283,2,15 MODERATE NONE missense_variant ORF1ab c.1400A>T
SRR15315457 NC_045512.2 2205 A T 163.0 3311 0.004832 9 1010,2283,2,15 MODERATE NONE missense_variant ORF1ab c.1400A>T
SRR15315457 NC_045512.2 2326 T C 103.0 1351 0.007402 11 845,495,10,1 LOW NONE synonymous_variant ORF1ab c.2061T>C
SRR15315457 NC_045512.2 2326 T C 103.0 1351 0.007402 11 845,495,10,1 LOW NONE synonymous_variant ORF1ab c.2061T>C
SRR15315457 NC_045512.2 2326 T C 103.0 1351 0.007402 11 845,495,10,1 LOW NONE synonymous_variant ORF1ab c.1521T>C
SRR15315457 NC_045512.2 2326 T C 103.0 1351 0.007402 11 845,495,10,1 LOW NONE synonymous_variant ORF1ab c.1521T>C
SRR15315457 NC_045512.2 2381 G A 186.0 1814 0.008269 0 891,907,8,7 MODERATE NONE missense_variant ORF1ab c.2116G>A
SRR15315457 NC_045512.2 2381 G A 186.0 1814 0.008269 0 891,907,8,7 MODERATE NONE missense_variant ORF1ab c.2116G>A
SRR15315457 NC_045512.2 2381 G A 186.0 1814 0.008269 0 891,907,8,7 MODERATE NONE missense_variant ORF1ab c.1576G>A
SRR15315457 NC_045512.2 2381 G A 186.0 1814 0.008269 0 891,907,8,7 MODERATE NONE missense_variant ORF1ab c.1576G>A
SRR15315457 NC_045512.2 2463 TA T 61.0 1265 0.003162 0 503,775,1,3 HIGH NONE frameshift_variant ORF1ab c.2202delA
SRR15315457 NC_045512.2 2463 TA T 61.0 1265 0.003162 0 503,775,1,3 HIGH NONE frameshift_variant ORF1ab c.2202delA
SRR15315457 NC_045512.2 2463 TA T 61.0 1265 0.003162 0 503,775,1,3 HIGH NONE frameshift_variant ORF1ab c.1662delA
SRR15315457 NC_045512.2 2463 TA T 61.0 1265 0.003162 0 503,775,1,3 HIGH NONE frameshift_variant ORF1ab c.1662delA
SRR15315457 NC_045512.2 2749 C T 45384.0 1332 0.970721 0 0,0,630,702 LOW NONE synonymous_variant ORF1ab c.2484C>T
SRR15315457 NC_045512.2 2749 C T 45384.0 1332 0.970721 0 0,0,630,702 LOW NONE synonymous_variant ORF1ab c.2484C>T
SRR15315457 NC_045512.2 2749 C T 45384.0 1332 0.970721 0 0,0,630,702 LOW NONE synonymous_variant ORF1ab c.30C>T
SRR15315457 NC_045512.2 2749 C T 45384.0 1332 0.970721 0 0,0,630,702 LOW NONE synonymous_variant ORF1ab c.30C>T
SRR15315457 NC_045512.2 2904 TA T 59.0 2544 0.001965 2 2216,469,5,0 HIGH NONE frameshift_variant ORF1ab c.2644delA
SRR15315457 NC_045512.2 2904 TA T 59.0 2544 0.001965 2 2216,469,5,0 HIGH NONE frameshift_variant ORF1ab c.2644delA
SRR15315457 NC_045512.2 2904 TA T 59.0 2544 0.001965 2 2216,469,5,0 HIGH NONE frameshift_variant ORF1ab c.190delA
SRR15315457 NC_045512.2 2904 TA T 59.0 2544 0.001965 2 2216,469,5,0 HIGH NONE frameshift_variant ORF1ab c.190delA
SRR15315457 NC_045512.2 3036 TC T 66.0 2908 0.001719 4 1443,1537,1,4 HIGH NONE frameshift_variant ORF1ab c.2772delC
SRR15315457 NC_045512.2 3036 TC T 66.0 2908 0.001719 4 1443,1537,1,4 HIGH NONE frameshift_variant ORF1ab c.2772delC
SRR15315457 NC_045512.2 3036 TC T 66.0 2908 0.001719 4 1443,1537,1,4 HIGH NONE frameshift_variant ORF1ab c.318delC
SRR15315457 NC_045512.2 3036 TC T 66.0 2908 0.001719 4 1443,1537,1,4 HIGH NONE frameshift_variant ORF1ab c.318delC
SRR15315457 NC_045512.2 3037 C T 49314.0 2928 0.925205 0 0,1,1401,1519 LOW NONE synonymous_variant ORF1ab c.2772C>T
SRR15315457 NC_045512.2 3037 C T 49314.0 2928 0.925205 0 0,1,1401,1519 LOW NONE synonymous_variant ORF1ab c.2772C>T
SRR15315457 NC_045512.2 3037 C T 49314.0 2928 0.925205 0 0,1,1401,1519 LOW NONE synonymous_variant ORF1ab c.318C>T
SRR15315457 NC_045512.2 3037 C T 49314.0 2928 0.925205 0 0,1,1401,1519 LOW NONE synonymous_variant ORF1ab c.318C>T
SRR15315457 NC_045512.2 3131 C A 106.0 2625 0.004571 1 392,2218,1,13 MODERATE NONE missense_variant ORF1ab c.2866C>A
SRR15315457 NC_045512.2 3131 C A 106.0 2625 0.004571 1 392,2218,1,13 MODERATE NONE missense_variant ORF1ab c.2866C>A
SRR15315457 NC_045512.2 3131 C A 106.0 2625 0.004571 1 392,2218,1,13 MODERATE NONE missense_variant ORF1ab c.412C>A
SRR15315457 NC_045512.2 3131 C A 106.0 2625 0.004571 1 392,2218,1,13 MODERATE NONE missense_variant ORF1ab c.412C>A
SRR15315457 NC_045512.2 3242 G A 49314.0 3048 0.951115 0 0,0,2494,551 MODERATE NONE missense_variant ORF1ab c.2977G>A
SRR15315457 NC_045512.2 3242 G A 49314.0 3048 0.951115 0 0,0,2494,551 MODERATE NONE missense_variant ORF1ab c.2977G>A
SRR15315457 NC_045512.2 3242 G A 49314.0 3048 0.951115 0 0,0,2494,551 MODERATE NONE missense_variant ORF1ab c.523G>A
SRR15315457 NC_045512.2 3242 G A 49314.0 3048 0.951115 0 0,0,2494,551 MODERATE NONE missense_variant ORF1ab c.523G>A
SRR15315457 NC_045512.2 3265 T C 313.0 3376 0.007998 0 2501,845,21,6 LOW NONE synonymous_variant ORF1ab c.3000T>C
SRR15315457 NC_045512.2 3265 T C 313.0 3376 0.007998 0 2501,845,21,6 LOW NONE synonymous_variant ORF1ab c.3000T>C
SRR15315457 NC_045512.2 3265 T C 313.0 3376 0.007998 0 2501,845,21,6 LOW NONE synonymous_variant ORF1ab c.546T>C
SRR15315457 NC_045512.2 3265 T C 313.0 3376 0.007998 0 2501,845,21,6 LOW NONE synonymous_variant ORF1ab c.546T>C
SRR15315457 NC_045512.2 3285 A G 162.0 3667 0.004909 3 2521,1124,11,7 MODERATE NONE missense_variant ORF1ab c.3020A>G
SRR15315457 NC_045512.2 3285 A G 162.0 3667 0.004909 3 2521,1124,11,7 MODERATE NONE missense_variant ORF1ab c.3020A>G
SRR15315457 NC_045512.2 3285 A G 162.0 3667 0.004909 3 2521,1124,11,7 MODERATE NONE missense_variant ORF1ab c.566A>G
SRR15315457 NC_045512.2 3285 A G 162.0 3667 0.004909 3 2521,1124,11,7 MODERATE NONE missense_variant ORF1ab c.566A>G
SRR15315457 NC_045512.2 3345 GT G 403.0 3847 0.006239 5 1854,2000,9,15 HIGH NONE frameshift_variant ORF1ab c.3084delT
SRR15315457 NC_045512.2 3345 GT G 403.0 3847 0.006239 5 1854,2000,9,15 HIGH NONE frameshift_variant ORF1ab c.3084delT
SRR15315457 NC_045512.2 3345 GT G 403.0 3847 0.006239 5 1854,2000,9,15 HIGH NONE frameshift_variant ORF1ab c.630delT
SRR15315457 NC_045512.2 3345 GT G 403.0 3847 0.006239 5 1854,2000,9,15 HIGH NONE frameshift_variant ORF1ab c.630delT
SRR15315457 NC_045512.2 3381 ACATT A 205.0 3486 0.003729 1 1229,2307,5,8 HIGH NONE frameshift_variant ORF1ab c.3117_3120delCATT
SRR15315457 NC_045512.2 3381 ACATT A 205.0 3486 0.003729 1 1229,2307,5,8 HIGH NONE frameshift_variant ORF1ab c.3117_3120delCATT
SRR15315457 NC_045512.2 3381 ACATT A 205.0 3486 0.003729 1 1229,2307,5,8 HIGH NONE frameshift_variant ORF1ab c.663_666delCATT
SRR15315457 NC_045512.2 3381 ACATT A 205.0 3486 0.003729 1 1229,2307,5,8 HIGH NONE frameshift_variant ORF1ab c.663_666delCATT
SRR15315457 NC_045512.2 3432 T C 161.0 2800 0.005357 3 425,2356,3,12 MODERATE NONE missense_variant ORF1ab c.3167T>C
SRR15315457 NC_045512.2 3432 T C 161.0 2800 0.005357 3 425,2356,3,12 MODERATE NONE missense_variant ORF1ab c.3167T>C
SRR15315457 NC_045512.2 3432 T C 161.0 2800 0.005357 3 425,2356,3,12 MODERATE NONE missense_variant ORF1ab c.713T>C
SRR15315457 NC_045512.2 3432 T C 161.0 2800 0.005357 3 425,2356,3,12 MODERATE NONE missense_variant ORF1ab c.713T>C
SRR15315457 NC_045512.2 3828 C T 20997.0 603 0.983416 0 0,0,570,32 MODERATE NONE missense_variant ORF1ab c.3563C>T
SRR15315457 NC_045512.2 3828 C T 20997.0 603 0.983416 0 0,0,570,32 MODERATE NONE missense_variant ORF1ab c.3563C>T
SRR15315457 NC_045512.2 3828 C T 20997.0 603 0.983416 0 0,0,570,32 MODERATE NONE missense_variant ORF1ab c.1109C>T
SRR15315457 NC_045512.2 3828 C T 20997.0 603 0.983416 0 0,0,570,32 MODERATE NONE missense_variant ORF1ab c.1109C>T
SRR15315457 NC_045512.2 3832 C CT 134.0 623 0.011236 0 580,37,7,0 HIGH NONE frameshift_variant ORF1ab c.3572dupT
SRR15315457 NC_045512.2 3832 C CT 134.0 623 0.011236 0 580,37,7,0 HIGH NONE frameshift_variant ORF1ab c.3572dupT
SRR15315457 NC_045512.2 3832 C CT 134.0 623 0.011236 0 580,37,7,0 HIGH NONE frameshift_variant ORF1ab c.1118dupT
SRR15315457 NC_045512.2 3832 C CT 134.0 623 0.011236 0 580,37,7,0 HIGH NONE frameshift_variant ORF1ab c.1118dupT
SRR15315457 NC_045512.2 4116 CAT C 870.0 2977 0.013772 0 2134,812,30,11 HIGH NONE frameshift_variant ORF1ab c.3857_3858delTA
SRR15315457 NC_045512.2 4116 CAT C 870.0 2977 0.013772 0 2134,812,30,11 HIGH NONE frameshift_variant ORF1ab c.3857_3858delTA
SRR15315457 NC_045512.2 4116 CAT C 870.0 2977 0.013772 0 2134,812,30,11 HIGH NONE frameshift_variant ORF1ab c.1403_1404delTA
SRR15315457 NC_045512.2 4116 CAT C 870.0 2977 0.013772 0 2134,812,30,11 HIGH NONE frameshift_variant ORF1ab c.1403_1404delTA
SRR15315457 NC_045512.2 4125 T C 205.0 3017 0.005966 5 2113,885,15,3 MODERATE NONE missense_variant ORF1ab c.3860T>C
SRR15315457 NC_045512.2 4125 T C 205.0 3017 0.005966 5 2113,885,15,3 MODERATE NONE missense_variant ORF1ab c.3860T>C
SRR15315457 NC_045512.2 4125 T C 205.0 3017 0.005966 5 2113,885,15,3 MODERATE NONE missense_variant ORF1ab c.1406T>C
SRR15315457 NC_045512.2 4125 T C 205.0 3017 0.005966 5 2113,885,15,3 MODERATE NONE missense_variant ORF1ab c.1406T>C
SRR15315457 NC_045512.2 4597 T C 527.0 2655 0.013559 3 598,2017,6,32 LOW NONE synonymous_variant ORF1ab c.4332T>C
SRR15315457 NC_045512.2 4597 T C 527.0 2655 0.013559 3 598,2017,6,32 LOW NONE synonymous_variant ORF1ab c.4332T>C
SRR15315457 NC_045512.2 4597 T C 527.0 2655 0.013559 3 598,2017,6,32 LOW NONE synonymous_variant ORF1ab c.1878T>C
SRR15315457 NC_045512.2 4597 T C 527.0 2655 0.013559 3 598,2017,6,32 LOW NONE synonymous_variant ORF1ab c.1878T>C
SRR15315457 NC_045512.2 4968 T C 484.0 1897 0.017396 67 519,1338,24,9 MODERATE NONE missense_variant ORF1ab c.4703T>C
SRR15315457 NC_045512.2 4968 T C 484.0 1897 0.017396 67 519,1338,24,9 MODERATE NONE missense_variant ORF1ab c.4703T>C
SRR15315457 NC_045512.2 4968 T C 484.0 1897 0.017396 67 519,1338,24,9 MODERATE NONE missense_variant ORF1ab c.2249T>C
SRR15315457 NC_045512.2 4968 T C 484.0 1897 0.017396 67 519,1338,24,9 MODERATE NONE missense_variant ORF1ab c.2249T>C
SRR15315457 NC_045512.2 5118 T A 249.0 1044 0.015326 21 572,455,15,2 MODERATE NONE missense_variant ORF1ab c.4853T>A
SRR15315457 NC_045512.2 5118 T A 249.0 1044 0.015326 21 572,455,15,2 MODERATE NONE missense_variant ORF1ab c.4853T>A
SRR15315457 NC_045512.2 5118 T A 249.0 1044 0.015326 21 572,455,15,2 MODERATE NONE missense_variant ORF1ab c.2399T>A
SRR15315457 NC_045512.2 5118 T A 249.0 1044 0.015326 21 572,455,15,2 MODERATE NONE missense_variant ORF1ab c.2399T>A
SRR15315457 NC_045512.2 5119 T A 228.0 1043 0.014382 28 566,461,15,1 MODERATE NONE missense_variant ORF1ab c.4854T>A
SRR15315457 NC_045512.2 5119 T A 228.0 1043 0.014382 28 566,461,15,1 MODERATE NONE missense_variant ORF1ab c.4854T>A
SRR15315457 NC_045512.2 5119 T A 228.0 1043 0.014382 28 566,461,15,1 MODERATE NONE missense_variant ORF1ab c.2400T>A
SRR15315457 NC_045512.2 5119 T A 228.0 1043 0.014382 28 566,461,15,1 MODERATE NONE missense_variant ORF1ab c.2400T>A
SRR15315457 NC_045512.2 5120 T A 244.0 1050 0.015238 28 566,468,15,1 MODERATE NONE missense_variant ORF1ab c.4855T>A
SRR15315457 NC_045512.2 5120 T A 244.0 1050 0.015238 28 566,468,15,1 MODERATE NONE missense_variant ORF1ab c.4855T>A
SRR15315457 NC_045512.2 5120 T A 244.0 1050 0.015238 28 566,468,15,1 MODERATE NONE missense_variant ORF1ab c.2401T>A
SRR15315457 NC_045512.2 5120 T A 244.0 1050 0.015238 28 566,468,15,1 MODERATE NONE missense_variant ORF1ab c.2401T>A
SRR15315457 NC_045512.2 5229 A T 76.0 792 0.007576 1 203,579,1,7 MODERATE NONE missense_variant ORF1ab c.4964A>T
SRR15315457 NC_045512.2 5229 A T 76.0 792 0.007576 1 203,579,1,7 MODERATE NONE missense_variant ORF1ab c.4964A>T
SRR15315457 NC_045512.2 5229 A T 76.0 792 0.007576 1 203,579,1,7 MODERATE NONE missense_variant ORF1ab c.2510A>T
SRR15315457 NC_045512.2 5229 A T 76.0 792 0.007576 1 203,579,1,7 MODERATE NONE missense_variant ORF1ab c.2510A>T
SRR15315457 NC_045512.2 5266 TA T 58.0 1831 0.002185 0 1018,824,2,2 HIGH NONE frameshift_variant ORF1ab c.5004delA
SRR15315457 NC_045512.2 5266 TA T 58.0 1831 0.002185 0 1018,824,2,2 HIGH NONE frameshift_variant ORF1ab c.5004delA
SRR15315457 NC_045512.2 5266 TA T 58.0 1831 0.002185 0 1018,824,2,2 HIGH NONE frameshift_variant ORF1ab c.2550delA
SRR15315457 NC_045512.2 5266 TA T 58.0 1831 0.002185 0 1018,824,2,2 HIGH NONE frameshift_variant ORF1ab c.2550delA
SRR15315457 NC_045512.2 5293 T C 154.0 2780 0.006115 12 2028,735,16,1 LOW NONE synonymous_variant ORF1ab c.5028T>C
SRR15315457 NC_045512.2 5293 T C 154.0 2780 0.006115 12 2028,735,16,1 LOW NONE synonymous_variant ORF1ab c.5028T>C
SRR15315457 NC_045512.2 5293 T C 154.0 2780 0.006115 12 2028,735,16,1 LOW NONE synonymous_variant ORF1ab c.2574T>C
SRR15315457 NC_045512.2 5293 T C 154.0 2780 0.006115 12 2028,735,16,1 LOW NONE synonymous_variant ORF1ab c.2574T>C
SRR15315457 NC_045512.2 5469 T C 127.0 4701 0.003404 0 1974,2709,6,10 MODERATE NONE missense_variant ORF1ab c.5204T>C
SRR15315457 NC_045512.2 5469 T C 127.0 4701 0.003404 0 1974,2709,6,10 MODERATE NONE missense_variant ORF1ab c.5204T>C
SRR15315457 NC_045512.2 5469 T C 127.0 4701 0.003404 0 1974,2709,6,10 MODERATE NONE missense_variant ORF1ab c.2750T>C
SRR15315457 NC_045512.2 5469 T C 127.0 4701 0.003404 0 1974,2709,6,10 MODERATE NONE missense_variant ORF1ab c.2750T>C
SRR15315457 NC_045512.2 5471 T C 192.0 4793 0.004381 2 1986,2784,11,11 MODERATE NONE missense_variant ORF1ab c.5206T>C
SRR15315457 NC_045512.2 5471 T C 192.0 4793 0.004381 2 1986,2784,11,11 MODERATE NONE missense_variant ORF1ab c.5206T>C
SRR15315457 NC_045512.2 5471 T C 192.0 4793 0.004381 2 1986,2784,11,11 MODERATE NONE missense_variant ORF1ab c.2752T>C
SRR15315457 NC_045512.2 5471 T C 192.0 4793 0.004381 2 1986,2784,11,11 MODERATE NONE missense_variant ORF1ab c.2752T>C
SRR15315457 NC_045512.2 5504 G A 173.0 4275 0.004678 1 1498,2755,8,12 MODERATE NONE missense_variant ORF1ab c.5239G>A
SRR15315457 NC_045512.2 5504 G A 173.0 4275 0.004678 1 1498,2755,8,12 MODERATE NONE missense_variant ORF1ab c.5239G>A
SRR15315457 NC_045512.2 5504 G A 173.0 4275 0.004678 1 1498,2755,8,12 MODERATE NONE missense_variant ORF1ab c.2785G>A
SRR15315457 NC_045512.2 5504 G A 173.0 4275 0.004678 1 1498,2755,8,12 MODERATE NONE missense_variant ORF1ab c.2785G>A
SRR15315457 NC_045512.2 5534 C T 221.0 3807 0.005779 1 1009,2774,7,16 HIGH NONE stop_gained ORF1ab c.5269C>T
SRR15315457 NC_045512.2 5534 C T 221.0 3807 0.005779 1 1009,2774,7,16 HIGH NONE stop_gained ORF1ab c.5269C>T
SRR15315457 NC_045512.2 5534 C T 221.0 3807 0.005779 1 1009,2774,7,16 HIGH NONE stop_gained ORF1ab c.2815C>T
SRR15315457 NC_045512.2 5534 C T 221.0 3807 0.005779 1 1009,2774,7,16 HIGH NONE stop_gained ORF1ab c.2815C>T
SRR15315457 NC_045512.2 5648 A C 49314.0 1962 0.966361 4 1,1,1601,359 MODERATE NONE missense_variant ORF1ab c.5383A>C
SRR15315457 NC_045512.2 5648 A C 49314.0 1962 0.966361 4 1,1,1601,359 MODERATE NONE missense_variant ORF1ab c.5383A>C
SRR15315457 NC_045512.2 5648 A C 49314.0 1962 0.966361 4 1,1,1601,359 MODERATE NONE missense_variant ORF1ab c.2929A>C
SRR15315457 NC_045512.2 5648 A C 49314.0 1962 0.966361 4 1,1,1601,359 MODERATE NONE missense_variant ORF1ab c.2929A>C
SRR15315457 NC_045512.2 5810 G C 111.0 3569 0.003642 2 1501,2049,4,9 MODERATE NONE missense_variant ORF1ab c.5545G>C
SRR15315457 NC_045512.2 5810 G C 111.0 3569 0.003642 2 1501,2049,4,9 MODERATE NONE missense_variant ORF1ab c.5545G>C
SRR15315457 NC_045512.2 5810 G C 111.0 3569 0.003642 2 1501,2049,4,9 MODERATE NONE missense_variant ORF1ab c.3091G>C
SRR15315457 NC_045512.2 5810 G C 111.0 3569 0.003642 2 1501,2049,4,9 MODERATE NONE missense_variant ORF1ab c.3091G>C
SRR15315457 NC_045512.2 5903 G GT 69.0 2388 0.002094 21 887,1548,5,0 HIGH NONE frameshift_variant ORF1ab c.5640dupT
SRR15315457 NC_045512.2 5903 G GT 69.0 2388 0.002094 21 887,1548,5,0 HIGH NONE frameshift_variant ORF1ab c.5640dupT
SRR15315457 NC_045512.2 5903 G GT 69.0 2388 0.002094 21 887,1548,5,0 HIGH NONE frameshift_variant ORF1ab c.3186dupT
SRR15315457 NC_045512.2 5903 G GT 69.0 2388 0.002094 21 887,1548,5,0 HIGH NONE frameshift_variant ORF1ab c.3186dupT
SRR15315457 NC_045512.2 5920 TG T 168.0 2248 0.004448 9 1062,1209,2,8 HIGH NONE frameshift_variant ORF1ab c.5657delG
SRR15315457 NC_045512.2 5920 TG T 168.0 2248 0.004448 9 1062,1209,2,8 HIGH NONE frameshift_variant ORF1ab c.5657delG
SRR15315457 NC_045512.2 5920 TG T 168.0 2248 0.004448 9 1062,1209,2,8 HIGH NONE frameshift_variant ORF1ab c.3203delG
SRR15315457 NC_045512.2 5920 TG T 168.0 2248 0.004448 9 1062,1209,2,8 HIGH NONE frameshift_variant ORF1ab c.3203delG
SRR15315457 NC_045512.2 5985 T C 180.0 1510 0.009272 6 1136,358,14,1 MODERATE NONE missense_variant ORF1ab c.5720T>C
SRR15315457 NC_045512.2 5985 T C 180.0 1510 0.009272 6 1136,358,14,1 MODERATE NONE missense_variant ORF1ab c.5720T>C
SRR15315457 NC_045512.2 5985 T C 180.0 1510 0.009272 6 1136,358,14,1 MODERATE NONE missense_variant ORF1ab c.3266T>C
SRR15315457 NC_045512.2 5985 T C 180.0 1510 0.009272 6 1136,358,14,1 MODERATE NONE missense_variant ORF1ab c.3266T>C
SRR15315457 NC_045512.2 6100 T C 196.0 1876 0.007996 2 812,1041,8,7 LOW NONE synonymous_variant ORF1ab c.5835T>C
SRR15315457 NC_045512.2 6100 T C 196.0 1876 0.007996 2 812,1041,8,7 LOW NONE synonymous_variant ORF1ab c.5835T>C
SRR15315457 NC_045512.2 6100 T C 196.0 1876 0.007996 2 812,1041,8,7 LOW NONE synonymous_variant ORF1ab c.3381T>C
SRR15315457 NC_045512.2 6100 T C 196.0 1876 0.007996 2 812,1041,8,7 LOW NONE synonymous_variant ORF1ab c.3381T>C
SRR15315457 NC_045512.2 6120 C T 261.0 1962 0.010194 0 815,1125,8,12 MODERATE NONE missense_variant ORF1ab c.5855C>T
SRR15315457 NC_045512.2 6120 C T 261.0 1962 0.010194 0 815,1125,8,12 MODERATE NONE missense_variant ORF1ab c.5855C>T
SRR15315457 NC_045512.2 6120 C T 261.0 1962 0.010194 0 815,1125,8,12 MODERATE NONE missense_variant ORF1ab c.3401C>T
SRR15315457 NC_045512.2 6120 C T 261.0 1962 0.010194 0 815,1125,8,12 MODERATE NONE missense_variant ORF1ab c.3401C>T
SRR15315457 NC_045512.2 6197 T TGCA 115.0 2857 0.0028 25 1359,1502,8,0 MODERATE NONE disruptive_inframe_insertion ORF1ab c.5932_5933insGCA
SRR15315457 NC_045512.2 6197 T TGCA 115.0 2857 0.0028 25 1359,1502,8,0 MODERATE NONE disruptive_inframe_insertion ORF1ab c.5932_5933insGCA
SRR15315457 NC_045512.2 6197 T TGCA 115.0 2857 0.0028 25 1359,1502,8,0 MODERATE NONE disruptive_inframe_insertion ORF1ab c.3478_3479insGCA
SRR15315457 NC_045512.2 6197 T TGCA 115.0 2857 0.0028 25 1359,1502,8,0 MODERATE NONE disruptive_inframe_insertion ORF1ab c.3478_3479insGCA
SRR15315457 NC_045512.2 6198 CTTTT C 109.0 3124 0.002561 27 1401,1728,8,0 HIGH NONE frameshift_variant ORF1ab c.5934_5937delTTTT
SRR15315457 NC_045512.2 6198 CTTTT C 109.0 3124 0.002561 27 1401,1728,8,0 HIGH NONE frameshift_variant ORF1ab c.5934_5937delTTTT
SRR15315457 NC_045512.2 6198 CTTTT C 109.0 3124 0.002561 27 1401,1728,8,0 HIGH NONE frameshift_variant ORF1ab c.3480_3483delTTTT
SRR15315457 NC_045512.2 6198 CTTTT C 109.0 3124 0.002561 27 1401,1728,8,0 HIGH NONE frameshift_variant ORF1ab c.3480_3483delTTTT
SRR15315457 NC_045512.2 6200 T C 191.0 3169 0.00568 11 1427,1712,14,7 MODERATE NONE missense_variant ORF1ab c.5935T>C
SRR15315457 NC_045512.2 6200 T C 191.0 3169 0.00568 11 1427,1712,14,7 MODERATE NONE missense_variant ORF1ab c.5935T>C
SRR15315457 NC_045512.2 6200 T C 191.0 3169 0.00568 11 1427,1712,14,7 MODERATE NONE missense_variant ORF1ab c.3481T>C
SRR15315457 NC_045512.2 6200 T C 191.0 3169 0.00568 11 1427,1712,14,7 MODERATE NONE missense_variant ORF1ab c.3481T>C
SRR15315457 NC_045512.2 6209 G A 106.0 3219 0.003728 13 1511,1693,10,3 MODERATE NONE missense_variant ORF1ab c.5944G>A
SRR15315457 NC_045512.2 6209 G A 106.0 3219 0.003728 13 1511,1693,10,3 MODERATE NONE missense_variant ORF1ab c.5944G>A
SRR15315457 NC_045512.2 6209 G A 106.0 3219 0.003728 13 1511,1693,10,3 MODERATE NONE missense_variant ORF1ab c.3490G>A
SRR15315457 NC_045512.2 6209 G A 106.0 3219 0.003728 13 1511,1693,10,3 MODERATE NONE missense_variant ORF1ab c.3490G>A
SRR15315457 NC_045512.2 6319 A G 49314.0 3517 0.969861 0 0,0,2055,1460 LOW NONE synonymous_variant ORF1ab c.6054A>G
SRR15315457 NC_045512.2 6319 A G 49314.0 3517 0.969861 0 0,0,2055,1460 LOW NONE synonymous_variant ORF1ab c.6054A>G
SRR15315457 NC_045512.2 6319 A G 49314.0 3517 0.969861 0 0,0,2055,1460 LOW NONE synonymous_variant ORF1ab c.3600A>G
SRR15315457 NC_045512.2 6319 A G 49314.0 3517 0.969861 0 0,0,2055,1460 LOW NONE synonymous_variant ORF1ab c.3600A>G
SRR15315457 NC_045512.2 6613 A G 49314.0 2627 0.979064 0 2,1,1449,1175 LOW NONE synonymous_variant ORF1ab c.6348A>G
SRR15315457 NC_045512.2 6613 A G 49314.0 2627 0.979064 0 2,1,1449,1175 LOW NONE synonymous_variant ORF1ab c.6348A>G
SRR15315457 NC_045512.2 6613 A G 49314.0 2627 0.979064 0 2,1,1449,1175 LOW NONE synonymous_variant ORF1ab c.3894A>G
SRR15315457 NC_045512.2 6613 A G 49314.0 2627 0.979064 0 2,1,1449,1175 LOW NONE synonymous_variant ORF1ab c.3894A>G
SRR15315457 NC_045512.2 6642 G T 486.0 2895 0.013126 1 1464,1389,20,21 MODERATE NONE missense_variant ORF1ab c.6377G>T
SRR15315457 NC_045512.2 6642 G T 486.0 2895 0.013126 1 1464,1389,20,21 MODERATE NONE missense_variant ORF1ab c.6377G>T
SRR15315457 NC_045512.2 6642 G T 486.0 2895 0.013126 1 1464,1389,20,21 MODERATE NONE missense_variant ORF1ab c.3923G>T
SRR15315457 NC_045512.2 6642 G T 486.0 2895 0.013126 1 1464,1389,20,21 MODERATE NONE missense_variant ORF1ab c.3923G>T
SRR15315457 NC_045512.2 6727 TA T 469.0 2209 0.010865 5 1008,1217,8,16 HIGH NONE frameshift_variant ORF1ab c.6464delA
SRR15315457 NC_045512.2 6727 TA T 469.0 2209 0.010865 5 1008,1217,8,16 HIGH NONE frameshift_variant ORF1ab c.6464delA
SRR15315457 NC_045512.2 6727 TA T 469.0 2209 0.010865 5 1008,1217,8,16 HIGH NONE frameshift_variant ORF1ab c.4010delA
SRR15315457 NC_045512.2 6727 TA T 469.0 2209 0.010865 5 1008,1217,8,16 HIGH NONE frameshift_variant ORF1ab c.4010delA
SRR15315457 NC_045512.2 7531 A T 380.0 3020 0.009934 1 1301,1672,16,25 MODERATE NONE missense_variant ORF1ab c.7266A>T
SRR15315457 NC_045512.2 7531 A T 380.0 3020 0.009934 1 1301,1672,16,25 MODERATE NONE missense_variant ORF1ab c.7266A>T
SRR15315457 NC_045512.2 7531 A T 380.0 3020 0.009934 1 1301,1672,16,25 MODERATE NONE missense_variant ORF1ab c.4812A>T
SRR15315457 NC_045512.2 7531 A T 380.0 3020 0.009934 1 1301,1672,16,25 MODERATE NONE missense_variant ORF1ab c.4812A>T
SRR15315457 NC_045512.2 7622 GTTAA G 1212.0 1905 0.026772 32 170,1711,13,38 HIGH NONE frameshift_variant ORF1ab c.7360_7363delAATT
SRR15315457 NC_045512.2 7622 GTTAA G 1212.0 1905 0.026772 32 170,1711,13,38 HIGH NONE frameshift_variant ORF1ab c.7360_7363delAATT
SRR15315457 NC_045512.2 7622 GTTAA G 1212.0 1905 0.026772 32 170,1711,13,38 HIGH NONE frameshift_variant ORF1ab c.4906_4909delAATT
SRR15315457 NC_045512.2 7622 GTTAA G 1212.0 1905 0.026772 32 170,1711,13,38 HIGH NONE frameshift_variant ORF1ab c.4906_4909delAATT
SRR15315457 NC_045512.2 7656 TTA T 475.0 3633 0.007157 88 1977,1652,0,26 HIGH NONE frameshift_variant ORF1ab c.7393_7394delAT
SRR15315457 NC_045512.2 7656 TTA T 475.0 3633 0.007157 88 1977,1652,0,26 HIGH NONE frameshift_variant ORF1ab c.7393_7394delAT
SRR15315457 NC_045512.2 7656 TTA T 475.0 3633 0.007157 88 1977,1652,0,26 HIGH NONE frameshift_variant ORF1ab c.4939_4940delAT
SRR15315457 NC_045512.2 7656 TTA T 475.0 3633 0.007157 88 1977,1652,0,26 HIGH NONE frameshift_variant ORF1ab c.4939_4940delAT
SRR15315457 NC_045512.2 7767 T C 503.0 4459 0.009419 1 2510,1902,23,20 MODERATE NONE missense_variant ORF1ab c.7502T>C
SRR15315457 NC_045512.2 7767 T C 503.0 4459 0.009419 1 2510,1902,23,20 MODERATE NONE missense_variant ORF1ab c.7502T>C
SRR15315457 NC_045512.2 7767 T C 503.0 4459 0.009419 1 2510,1902,23,20 MODERATE NONE missense_variant ORF1ab c.5048T>C
SRR15315457 NC_045512.2 7767 T C 503.0 4459 0.009419 1 2510,1902,23,20 MODERATE NONE missense_variant ORF1ab c.5048T>C
SRR15315457 NC_045512.2 7789 T A 344.0 4333 0.007154 3 2232,2068,19,13 LOW NONE synonymous_variant ORF1ab c.7524T>A
SRR15315457 NC_045512.2 7789 T A 344.0 4333 0.007154 3 2232,2068,19,13 LOW NONE synonymous_variant ORF1ab c.7524T>A
SRR15315457 NC_045512.2 7789 T A 344.0 4333 0.007154 3 2232,2068,19,13 LOW NONE synonymous_variant ORF1ab c.5070T>A
SRR15315457 NC_045512.2 7789 T A 344.0 4333 0.007154 3 2232,2068,19,13 LOW NONE synonymous_variant ORF1ab c.5070T>A
SRR15315457 NC_045512.2 7926 CA C 370.0 3333 0.006601 5 706,2650,7,15 HIGH NONE frameshift_variant ORF1ab c.7665delA
SRR15315457 NC_045512.2 7926 CA C 370.0 3333 0.006601 5 706,2650,7,15 HIGH NONE frameshift_variant ORF1ab c.7665delA
SRR15315457 NC_045512.2 7926 CA C 370.0 3333 0.006601 5 706,2650,7,15 HIGH NONE frameshift_variant ORF1ab c.5211delA
SRR15315457 NC_045512.2 7926 CA C 370.0 3333 0.006601 5 706,2650,7,15 HIGH NONE frameshift_variant ORF1ab c.5211delA
SRR15315457 NC_045512.2 8153 T C 79.0 363 0.013774 1 153,204,3,2 LOW NONE synonymous_variant ORF1ab c.7888T>C
SRR15315457 NC_045512.2 8153 T C 79.0 363 0.013774 1 153,204,3,2 LOW NONE synonymous_variant ORF1ab c.7888T>C
SRR15315457 NC_045512.2 8153 T C 79.0 363 0.013774 1 153,204,3,2 LOW NONE synonymous_variant ORF1ab c.5434T>C
SRR15315457 NC_045512.2 8153 T C 79.0 363 0.013774 1 153,204,3,2 LOW NONE synonymous_variant ORF1ab c.5434T>C
SRR15315457 NC_045512.2 8334 CT C 59.0 1755 0.002279 20 1224,540,0,4 HIGH NONE frameshift_variant ORF1ab c.8071delT
SRR15315457 NC_045512.2 8334 CT C 59.0 1755 0.002279 20 1224,540,0,4 HIGH NONE frameshift_variant ORF1ab c.8071delT
SRR15315457 NC_045512.2 8334 CT C 59.0 1755 0.002279 20 1224,540,0,4 HIGH NONE frameshift_variant ORF1ab c.5617delT
SRR15315457 NC_045512.2 8334 CT C 59.0 1755 0.002279 20 1224,540,0,4 HIGH NONE frameshift_variant ORF1ab c.5617delT
SRR15315457 NC_045512.2 8464 TA T 203.0 2430 0.00535 0 1113,1327,6,7 HIGH NONE frameshift_variant ORF1ab c.8204delA
SRR15315457 NC_045512.2 8464 TA T 203.0 2430 0.00535 0 1113,1327,6,7 HIGH NONE frameshift_variant ORF1ab c.8204delA
SRR15315457 NC_045512.2 8464 TA T 203.0 2430 0.00535 0 1113,1327,6,7 HIGH NONE frameshift_variant ORF1ab c.5750delA
SRR15315457 NC_045512.2 8464 TA T 203.0 2430 0.00535 0 1113,1327,6,7 HIGH NONE frameshift_variant ORF1ab c.5750delA
SRR15315457 NC_045512.2 8907 T C 77.0 1437 0.004871 6 813,616,2,5 MODERATE NONE missense_variant ORF1ab c.8642T>C
SRR15315457 NC_045512.2 8907 T C 77.0 1437 0.004871 6 813,616,2,5 MODERATE NONE missense_variant ORF1ab c.8642T>C
SRR15315457 NC_045512.2 8907 T C 77.0 1437 0.004871 6 813,616,2,5 MODERATE NONE missense_variant ORF1ab c.353T>C
SRR15315457 NC_045512.2 8907 T C 77.0 1437 0.004871 6 813,616,2,5 MODERATE NONE missense_variant ORF1ab c.353T>C
SRR15315457 NC_045512.2 8983 T C 76.0 2428 0.003707 0 1664,753,7,3 LOW NONE synonymous_variant ORF1ab c.8718T>C
SRR15315457 NC_045512.2 8983 T C 76.0 2428 0.003707 0 1664,753,7,3 LOW NONE synonymous_variant ORF1ab c.8718T>C
SRR15315457 NC_045512.2 8983 T C 76.0 2428 0.003707 0 1664,753,7,3 LOW NONE synonymous_variant ORF1ab c.429T>C
SRR15315457 NC_045512.2 8983 T C 76.0 2428 0.003707 0 1664,753,7,3 LOW NONE synonymous_variant ORF1ab c.429T>C
SRR15315457 NC_045512.2 9192 T C 86.0 2351 0.003828 8 565,1774,5,6 MODERATE NONE missense_variant ORF1ab c.8927T>C
SRR15315457 NC_045512.2 9192 T C 86.0 2351 0.003828 8 565,1774,5,6 MODERATE NONE missense_variant ORF1ab c.8927T>C
SRR15315457 NC_045512.2 9192 T C 86.0 2351 0.003828 8 565,1774,5,6 MODERATE NONE missense_variant ORF1ab c.638T>C
SRR15315457 NC_045512.2 9192 T C 86.0 2351 0.003828 8 565,1774,5,6 MODERATE NONE missense_variant ORF1ab c.638T>C
SRR15315457 NC_045512.2 9302 T C 213.0 2629 0.006847 2 1817,792,14,4 MODERATE NONE missense_variant ORF1ab c.9037T>C
SRR15315457 NC_045512.2 9302 T C 213.0 2629 0.006847 2 1817,792,14,4 MODERATE NONE missense_variant ORF1ab c.9037T>C
SRR15315457 NC_045512.2 9302 T C 213.0 2629 0.006847 2 1817,792,14,4 MODERATE NONE missense_variant ORF1ab c.748T>C
SRR15315457 NC_045512.2 9302 T C 213.0 2629 0.006847 2 1817,792,14,4 MODERATE NONE missense_variant ORF1ab c.748T>C
SRR15315457 NC_045512.2 9325 T G 88.0 2786 0.003589 1 1760,1015,7,3 LOW NONE synonymous_variant ORF1ab c.9060T>G
SRR15315457 NC_045512.2 9325 T G 88.0 2786 0.003589 1 1760,1015,7,3 LOW NONE synonymous_variant ORF1ab c.9060T>G
SRR15315457 NC_045512.2 9325 T G 88.0 2786 0.003589 1 1760,1015,7,3 LOW NONE synonymous_variant ORF1ab c.771T>G
SRR15315457 NC_045512.2 9325 T G 88.0 2786 0.003589 1 1760,1015,7,3 LOW NONE synonymous_variant ORF1ab c.771T>G
SRR15315457 NC_045512.2 9350 AAT A 437.0 2714 0.008475 0 1557,1154,13,10 HIGH NONE frameshift_variant ORF1ab c.9088_9089delAT
SRR15315457 NC_045512.2 9350 AAT A 437.0 2714 0.008475 0 1557,1154,13,10 HIGH NONE frameshift_variant ORF1ab c.9088_9089delAT
SRR15315457 NC_045512.2 9350 AAT A 437.0 2714 0.008475 0 1557,1154,13,10 HIGH NONE frameshift_variant ORF1ab c.799_800delAT
SRR15315457 NC_045512.2 9350 AAT A 437.0 2714 0.008475 0 1557,1154,13,10 HIGH NONE frameshift_variant ORF1ab c.799_800delAT
SRR15315457 NC_045512.2 9505 TA T 140.0 4197 0.002383 12 2352,1894,9,1 HIGH NONE frameshift_variant ORF1ab c.9242delA
SRR15315457 NC_045512.2 9505 TA T 140.0 4197 0.002383 12 2352,1894,9,1 HIGH NONE frameshift_variant ORF1ab c.9242delA
SRR15315457 NC_045512.2 9505 TA T 140.0 4197 0.002383 12 2352,1894,9,1 HIGH NONE frameshift_variant ORF1ab c.953delA
SRR15315457 NC_045512.2 9505 TA T 140.0 4197 0.002383 12 2352,1894,9,1 HIGH NONE frameshift_variant ORF1ab c.953delA
SRR15315457 NC_045512.2 9628 T C 217.0 5550 0.005225 7 3546,1966,23,7 LOW NONE synonymous_variant ORF1ab c.9363T>C
SRR15315457 NC_045512.2 9628 T C 217.0 5550 0.005225 7 3546,1966,23,7 LOW NONE synonymous_variant ORF1ab c.9363T>C
SRR15315457 NC_045512.2 9628 T C 217.0 5550 0.005225 7 3546,1966,23,7 LOW NONE synonymous_variant ORF1ab c.1074T>C
SRR15315457 NC_045512.2 9628 T C 217.0 5550 0.005225 7 3546,1966,23,7 LOW NONE synonymous_variant ORF1ab c.1074T>C
SRR15315457 NC_045512.2 9812 T C 94.0 2812 0.003912 42 629,2164,9,2 MODERATE NONE missense_variant ORF1ab c.9547T>C
SRR15315457 NC_045512.2 9812 T C 94.0 2812 0.003912 42 629,2164,9,2 MODERATE NONE missense_variant ORF1ab c.9547T>C
SRR15315457 NC_045512.2 9812 T C 94.0 2812 0.003912 42 629,2164,9,2 MODERATE NONE missense_variant ORF1ab c.1258T>C
SRR15315457 NC_045512.2 9812 T C 94.0 2812 0.003912 42 629,2164,9,2 MODERATE NONE missense_variant ORF1ab c.1258T>C
SRR15315457 NC_045512.2 9951 C T 86.0 1043 0.006711 3 579,457,5,2 MODERATE NONE missense_variant ORF1ab c.9686C>T
SRR15315457 NC_045512.2 9951 C T 86.0 1043 0.006711 3 579,457,5,2 MODERATE NONE missense_variant ORF1ab c.9686C>T
SRR15315457 NC_045512.2 9951 C T 86.0 1043 0.006711 3 579,457,5,2 MODERATE NONE missense_variant ORF1ab c.1397C>T
SRR15315457 NC_045512.2 9951 C T 86.0 1043 0.006711 3 579,457,5,2 MODERATE NONE missense_variant ORF1ab c.1397C>T
SRR15315457 NC_045512.2 9958 T C 205.0 1087 0.012879 1 614,459,9,5 LOW NONE synonymous_variant ORF1ab c.9693T>C
SRR15315457 NC_045512.2 9958 T C 205.0 1087 0.012879 1 614,459,9,5 LOW NONE synonymous_variant ORF1ab c.9693T>C
SRR15315457 NC_045512.2 9958 T C 205.0 1087 0.012879 1 614,459,9,5 LOW NONE synonymous_variant ORF1ab c.1404T>C
SRR15315457 NC_045512.2 9958 T C 205.0 1087 0.012879 1 614,459,9,5 LOW NONE synonymous_variant ORF1ab c.1404T>C
SRR15315457 NC_045512.2 10111 A G 78.0 2810 0.003203 20 1871,929,2,7 LOW NONE synonymous_variant ORF1ab c.9846A>G
SRR15315457 NC_045512.2 10111 A G 78.0 2810 0.003203 20 1871,929,2,7 LOW NONE synonymous_variant ORF1ab c.9846A>G
SRR15315457 NC_045512.2 10111 A G 78.0 2810 0.003203 20 1871,929,2,7 LOW NONE synonymous_variant ORF1ab c.57A>G
SRR15315457 NC_045512.2 10111 A G 78.0 2810 0.003203 20 1871,929,2,7 LOW NONE synonymous_variant ORF1ab c.57A>G
SRR15315457 NC_045512.2 10527 C CT 323.0 1864 0.009657 0 968,895,9,9 HIGH NONE frameshift_variant ORF1ab c.10267dupT
SRR15315457 NC_045512.2 10527 C CT 323.0 1864 0.009657 0 968,895,9,9 HIGH NONE frameshift_variant ORF1ab c.10267dupT
SRR15315457 NC_045512.2 10527 C CT 323.0 1864 0.009657 0 968,895,9,9 HIGH NONE frameshift_variant ORF1ab c.478dupT
SRR15315457 NC_045512.2 10527 C CT 323.0 1864 0.009657 0 968,895,9,9 HIGH NONE frameshift_variant ORF1ab c.478dupT
SRR15315457 NC_045512.2 10601 G C 135.0 2115 0.006147 7 877,1224,3,11 MODERATE NONE missense_variant ORF1ab c.10336G>C
SRR15315457 NC_045512.2 10601 G C 135.0 2115 0.006147 7 877,1224,3,11 MODERATE NONE missense_variant ORF1ab c.10336G>C
SRR15315457 NC_045512.2 10601 G C 135.0 2115 0.006147 7 877,1224,3,11 MODERATE NONE missense_variant ORF1ab c.547G>C
SRR15315457 NC_045512.2 10601 G C 135.0 2115 0.006147 7 877,1224,3,11 MODERATE NONE missense_variant ORF1ab c.547G>C
SRR15315457 NC_045512.2 10606 T C 151.0 2052 0.007797 2 892,1144,8,8 LOW NONE synonymous_variant ORF1ab c.10341T>C
SRR15315457 NC_045512.2 10606 T C 151.0 2052 0.007797 2 892,1144,8,8 LOW NONE synonymous_variant ORF1ab c.10341T>C
SRR15315457 NC_045512.2 10606 T C 151.0 2052 0.007797 2 892,1144,8,8 LOW NONE synonymous_variant ORF1ab c.552T>C
SRR15315457 NC_045512.2 10606 T C 151.0 2052 0.007797 2 892,1144,8,8 LOW NONE synonymous_variant ORF1ab c.552T>C
SRR15315457 NC_045512.2 10639 T C 225.0 1749 0.00972 3 719,1012,5,12 LOW NONE synonymous_variant ORF1ab c.10374T>C
SRR15315457 NC_045512.2 10639 T C 225.0 1749 0.00972 3 719,1012,5,12 LOW NONE synonymous_variant ORF1ab c.10374T>C
SRR15315457 NC_045512.2 10639 T C 225.0 1749 0.00972 3 719,1012,5,12 LOW NONE synonymous_variant ORF1ab c.585T>C
SRR15315457 NC_045512.2 10639 T C 225.0 1749 0.00972 3 719,1012,5,12 LOW NONE synonymous_variant ORF1ab c.585T>C
SRR15315457 NC_045512.2 10673 T C 164.0 2073 0.007236 0 885,1172,7,8 MODERATE NONE missense_variant ORF1ab c.10408T>C
SRR15315457 NC_045512.2 10673 T C 164.0 2073 0.007236 0 885,1172,7,8 MODERATE NONE missense_variant ORF1ab c.10408T>C
SRR15315457 NC_045512.2 10673 T C 164.0 2073 0.007236 0 885,1172,7,8 MODERATE NONE missense_variant ORF1ab c.619T>C
SRR15315457 NC_045512.2 10673 T C 164.0 2073 0.007236 0 885,1172,7,8 MODERATE NONE missense_variant ORF1ab c.619T>C
SRR15315457 NC_045512.2 10736 A G 224.0 1634 0.010404 17 726,889,3,15 MODERATE NONE missense_variant ORF1ab c.10471A>G
SRR15315457 NC_045512.2 10736 A G 224.0 1634 0.010404 17 726,889,3,15 MODERATE NONE missense_variant ORF1ab c.10471A>G
SRR15315457 NC_045512.2 10736 A G 224.0 1634 0.010404 17 726,889,3,15 MODERATE NONE missense_variant ORF1ab c.682A>G
SRR15315457 NC_045512.2 10736 A G 224.0 1634 0.010404 17 726,889,3,15 MODERATE NONE missense_variant ORF1ab c.682A>G
SRR15315457 NC_045512.2 10897 A T 99.0 1188 0.006734 15 523,655,7,1 LOW NONE synonymous_variant ORF1ab c.10632A>T
SRR15315457 NC_045512.2 10897 A T 99.0 1188 0.006734 15 523,655,7,1 LOW NONE synonymous_variant ORF1ab c.10632A>T
SRR15315457 NC_045512.2 10897 A T 99.0 1188 0.006734 15 523,655,7,1 LOW NONE synonymous_variant ORF1ab c.843A>T
SRR15315457 NC_045512.2 10897 A T 99.0 1188 0.006734 15 523,655,7,1 LOW NONE synonymous_variant ORF1ab c.843A>T
SRR15315457 NC_045512.2 10906 T C 180.0 1177 0.011045 1 526,638,5,8 LOW NONE synonymous_variant ORF1ab c.10641T>C
SRR15315457 NC_045512.2 10906 T C 180.0 1177 0.011045 1 526,638,5,8 LOW NONE synonymous_variant ORF1ab c.10641T>C
SRR15315457 NC_045512.2 10906 T C 180.0 1177 0.011045 1 526,638,5,8 LOW NONE synonymous_variant ORF1ab c.852T>C
SRR15315457 NC_045512.2 10906 T C 180.0 1177 0.011045 1 526,638,5,8 LOW NONE synonymous_variant ORF1ab c.852T>C
SRR15315457 NC_045512.2 11020 C T 31213.0 872 0.985092 0 0,0,115,757 LOW NONE synonymous_variant ORF1ab c.10755C>T
SRR15315457 NC_045512.2 11020 C T 31213.0 872 0.985092 0 0,0,115,757 LOW NONE synonymous_variant ORF1ab c.10755C>T
SRR15315457 NC_045512.2 11020 C T 31213.0 872 0.985092 0 0,0,115,757 LOW NONE synonymous_variant ORF1ab c.48C>T
SRR15315457 NC_045512.2 11020 C T 31213.0 872 0.985092 0 0,0,115,757 LOW NONE synonymous_variant ORF1ab c.48C>T
SRR15315457 NC_045512.2 11287 GTCTGGTTTT G 1239.0 42 0.97619 2 4,10,16,25 MODERATE NONE conservative_inframe_deletion ORF1ab c.11023_11031delTCTGGTTTT
SRR15315457 NC_045512.2 11287 GTCTGGTTTT G 1239.0 42 0.97619 2 4,10,16,25 MODERATE NONE conservative_inframe_deletion ORF1ab c.11023_11031delTCTGGTTTT
SRR15315457 NC_045512.2 11287 GTCTGGTTTT G 1239.0 42 0.97619 2 4,10,16,25 MODERATE NONE conservative_inframe_deletion ORF1ab c.316_324delTCTGGTTTT
SRR15315457 NC_045512.2 11287 GTCTGGTTTT G 1239.0 42 0.97619 2 4,10,16,25 MODERATE NONE conservative_inframe_deletion ORF1ab c.316_324delTCTGGTTTT
SRR15315457 NC_045512.2 11376 G A 316.0 7062 0.004673 1 5408,1619,27,6 MODERATE NONE missense_variant ORF1ab c.11111G>A
SRR15315457 NC_045512.2 11376 G A 316.0 7062 0.004673 1 5408,1619,27,6 MODERATE NONE missense_variant ORF1ab c.11111G>A
SRR15315457 NC_045512.2 11376 G A 316.0 7062 0.004673 1 5408,1619,27,6 MODERATE NONE missense_variant ORF1ab c.404G>A
SRR15315457 NC_045512.2 11376 G A 316.0 7062 0.004673 1 5408,1619,27,6 MODERATE NONE missense_variant ORF1ab c.404G>A
SRR15315457 NC_045512.2 11528 G T 292.0 5905 0.00508 5 2387,3485,10,23 MODERATE NONE missense_variant ORF1ab c.11263G>T
SRR15315457 NC_045512.2 11528 G T 292.0 5905 0.00508 5 2387,3485,10,23 MODERATE NONE missense_variant ORF1ab c.11263G>T
SRR15315457 NC_045512.2 11528 G T 292.0 5905 0.00508 5 2387,3485,10,23 MODERATE NONE missense_variant ORF1ab c.556G>T
SRR15315457 NC_045512.2 11528 G T 292.0 5905 0.00508 5 2387,3485,10,23 MODERATE NONE missense_variant ORF1ab c.556G>T
SRR15315457 NC_045512.2 11540 GT G 83.0 5437 0.001471 8 2236,3292,1,7 HIGH NONE frameshift_variant ORF1ab c.11280delT
SRR15315457 NC_045512.2 11540 GT G 83.0 5437 0.001471 8 2236,3292,1,7 HIGH NONE frameshift_variant ORF1ab c.11280delT
SRR15315457 NC_045512.2 11540 GT G 83.0 5437 0.001471 8 2236,3292,1,7 HIGH NONE frameshift_variant ORF1ab c.573delT
SRR15315457 NC_045512.2 11540 GT G 83.0 5437 0.001471 8 2236,3292,1,7 HIGH NONE frameshift_variant ORF1ab c.573delT
SRR15315457 NC_045512.2 11629 TTTTTGTACTTGTTACTTTGGCCTC T 110.0 6089 0.001478 15 2277,3827,0,9 MODERATE NONE conservative_inframe_deletion ORF1ab c.11371_11394delACTTGTTACTTTGGCCTCTTTTGT
SRR15315457 NC_045512.2 11629 TTTTTGTACTTGTTACTTTGGCCTC T 110.0 6089 0.001478 15 2277,3827,0,9 MODERATE NONE conservative_inframe_deletion ORF1ab c.11371_11394delACTTGTTACTTTGGCCTCTTTTGT
SRR15315457 NC_045512.2 11629 TTTTTGTACTTGTTACTTTGGCCTC T 110.0 6089 0.001478 15 2277,3827,0,9 MODERATE NONE conservative_inframe_deletion ORF1ab c.664_687delACTTGTTACTTTGGCCTCTTTTGT
SRR15315457 NC_045512.2 11629 TTTTTGTACTTGTTACTTTGGCCTC T 110.0 6089 0.001478 15 2277,3827,0,9 MODERATE NONE conservative_inframe_deletion ORF1ab c.664_687delACTTGTTACTTTGGCCTCTTTTGT
SRR15315457 NC_045512.2 11644 C T 89.0 5385 0.002228 11 1976,3378,1,11 LOW NONE synonymous_variant ORF1ab c.11379C>T
SRR15315457 NC_045512.2 11644 C T 89.0 5385 0.002228 11 1976,3378,1,11 LOW NONE synonymous_variant ORF1ab c.11379C>T
SRR15315457 NC_045512.2 11644 C T 89.0 5385 0.002228 11 1976,3378,1,11 LOW NONE synonymous_variant ORF1ab c.672C>T
SRR15315457 NC_045512.2 11644 C T 89.0 5385 0.002228 11 1976,3378,1,11 LOW NONE synonymous_variant ORF1ab c.672C>T
SRR15315457 NC_045512.2 11758 C T 171.0 3113 0.005782 4 1331,1761,6,13 LOW NONE synonymous_variant ORF1ab c.11493C>T
SRR15315457 NC_045512.2 11758 C T 171.0 3113 0.005782 4 1331,1761,6,13 LOW NONE synonymous_variant ORF1ab c.11493C>T
SRR15315457 NC_045512.2 11758 C T 171.0 3113 0.005782 4 1331,1761,6,13 LOW NONE synonymous_variant ORF1ab c.786C>T
SRR15315457 NC_045512.2 11758 C T 171.0 3113 0.005782 4 1331,1761,6,13 LOW NONE synonymous_variant ORF1ab c.786C>T
SRR15315457 NC_045512.2 11824 C T 49314.0 3251 0.972931 0 0,0,1249,1998 LOW NONE synonymous_variant ORF1ab c.11559C>T
SRR15315457 NC_045512.2 11824 C T 49314.0 3251 0.972931 0 0,0,1249,1998 LOW NONE synonymous_variant ORF1ab c.11559C>T
SRR15315457 NC_045512.2 11824 C T 49314.0 3251 0.972931 0 0,0,1249,1998 LOW NONE synonymous_variant ORF1ab c.852C>T
SRR15315457 NC_045512.2 11824 C T 49314.0 3251 0.972931 0 0,0,1249,1998 LOW NONE synonymous_variant ORF1ab c.852C>T
SRR15315457 NC_045512.2 11890 T TG 57.0 4527 0.001104 1 2295,2252,2,3 HIGH NONE frameshift_variant ORF1ab c.11625_11626insG
SRR15315457 NC_045512.2 11890 T TG 57.0 4527 0.001104 1 2295,2252,2,3 HIGH NONE frameshift_variant ORF1ab c.11625_11626insG
SRR15315457 NC_045512.2 11890 T TG 57.0 4527 0.001104 1 2295,2252,2,3 HIGH NONE frameshift_variant ORF1ab c.48_49insG
SRR15315457 NC_045512.2 11890 T TG 57.0 4527 0.001104 1 2295,2252,2,3 HIGH NONE frameshift_variant ORF1ab c.48_49insG
SRR15315457 NC_045512.2 11896 AC A 57.0 4488 0.001114 1 2539,2019,2,3 HIGH NONE frameshift_variant ORF1ab c.11632delC
SRR15315457 NC_045512.2 11896 AC A 57.0 4488 0.001114 1 2539,2019,2,3 HIGH NONE frameshift_variant ORF1ab c.11632delC
SRR15315457 NC_045512.2 11896 AC A 57.0 4488 0.001114 1 2539,2019,2,3 HIGH NONE frameshift_variant ORF1ab c.55delC
SRR15315457 NC_045512.2 11896 AC A 57.0 4488 0.001114 1 2539,2019,2,3 HIGH NONE frameshift_variant ORF1ab c.55delC
SRR15315457 NC_045512.2 11902 C T 132.0 4436 0.003381 14 2672,1741,14,2 LOW NONE synonymous_variant ORF1ab c.11637C>T
SRR15315457 NC_045512.2 11902 C T 132.0 4436 0.003381 14 2672,1741,14,2 LOW NONE synonymous_variant ORF1ab c.11637C>T
SRR15315457 NC_045512.2 11902 C T 132.0 4436 0.003381 14 2672,1741,14,2 LOW NONE synonymous_variant ORF1ab c.60C>T
SRR15315457 NC_045512.2 11902 C T 132.0 4436 0.003381 14 2672,1741,14,2 LOW NONE synonymous_variant ORF1ab c.60C>T
SRR15315457 NC_045512.2 11936 T C 148.0 4972 0.003419 4 3908,1043,16,2 MODERATE NONE missense_variant ORF1ab c.11671T>C
SRR15315457 NC_045512.2 11936 T C 148.0 4972 0.003419 4 3908,1043,16,2 MODERATE NONE missense_variant ORF1ab c.11671T>C
SRR15315457 NC_045512.2 11936 T C 148.0 4972 0.003419 4 3908,1043,16,2 MODERATE NONE missense_variant ORF1ab c.94T>C
SRR15315457 NC_045512.2 11936 T C 148.0 4972 0.003419 4 3908,1043,16,2 MODERATE NONE missense_variant ORF1ab c.94T>C
SRR15315457 NC_045512.2 12008 CTTTCTG C 318.0 5059 0.003953 3 2993,2113,10,10 MODERATE NONE disruptive_inframe_deletion ORF1ab c.11747_11752delCTGTTT
SRR15315457 NC_045512.2 12008 CTTTCTG C 318.0 5059 0.003953 3 2993,2113,10,10 MODERATE NONE disruptive_inframe_deletion ORF1ab c.11747_11752delCTGTTT
SRR15315457 NC_045512.2 12008 CTTTCTG C 318.0 5059 0.003953 3 2993,2113,10,10 MODERATE NONE disruptive_inframe_deletion ORF1ab c.170_175delCTGTTT
SRR15315457 NC_045512.2 12008 CTTTCTG C 318.0 5059 0.003953 3 2993,2113,10,10 MODERATE NONE disruptive_inframe_deletion ORF1ab c.170_175delCTGTTT
SRR15315457 NC_045512.2 12058 T C 229.0 6012 0.004491 3 3028,2949,12,16 LOW NONE synonymous_variant ORF1ab c.11793T>C
SRR15315457 NC_045512.2 12058 T C 229.0 6012 0.004491 3 3028,2949,12,16 LOW NONE synonymous_variant ORF1ab c.11793T>C
SRR15315457 NC_045512.2 12058 T C 229.0 6012 0.004491 3 3028,2949,12,16 LOW NONE synonymous_variant ORF1ab c.216T>C
SRR15315457 NC_045512.2 12058 T C 229.0 6012 0.004491 3 3028,2949,12,16 LOW NONE synonymous_variant ORF1ab c.216T>C
SRR15315457 NC_045512.2 12109 TAG T 332.0 5169 0.004256 0 1837,3423,8,14 HIGH NONE frameshift_variant ORF1ab c.11845_11846delAG
SRR15315457 NC_045512.2 12109 TAG T 332.0 5169 0.004256 0 1837,3423,8,14 HIGH NONE frameshift_variant ORF1ab c.11845_11846delAG
SRR15315457 NC_045512.2 12109 TAG T 332.0 5169 0.004256 0 1837,3423,8,14 HIGH NONE frameshift_variant ORF1ab c.19_20delAG
SRR15315457 NC_045512.2 12109 TAG T 332.0 5169 0.004256 0 1837,3423,8,14 HIGH NONE frameshift_variant ORF1ab c.19_20delAG
SRR15315457 NC_045512.2 12129 C T 142.0 5803 0.003274 4 2524,3252,11,9 MODERATE NONE missense_variant ORF1ab c.11864C>T
SRR15315457 NC_045512.2 12129 C T 142.0 5803 0.003274 4 2524,3252,11,9 MODERATE NONE missense_variant ORF1ab c.11864C>T
SRR15315457 NC_045512.2 12129 C T 142.0 5803 0.003274 4 2524,3252,11,9 MODERATE NONE missense_variant ORF1ab c.38C>T
SRR15315457 NC_045512.2 12129 C T 142.0 5803 0.003274 4 2524,3252,11,9 MODERATE NONE missense_variant ORF1ab c.38C>T
SRR15315457 NC_045512.2 12501 CAT C 70.0 2450 0.002041 0 2155,348,5,0 HIGH NONE frameshift_variant ORF1ab c.12240_12241delTA
SRR15315457 NC_045512.2 12501 CAT C 70.0 2450 0.002041 0 2155,348,5,0 HIGH NONE frameshift_variant ORF1ab c.12240_12241delTA
SRR15315457 NC_045512.2 12501 CAT C 70.0 2450 0.002041 0 2155,348,5,0 HIGH NONE frameshift_variant ORF1ab c.414_415delTA
SRR15315457 NC_045512.2 12501 CAT C 70.0 2450 0.002041 0 2155,348,5,0 HIGH NONE frameshift_variant ORF1ab c.414_415delTA
SRR15315457 NC_045512.2 12503 T C 141.0 2501 0.005198 0 2109,371,12,2 MODERATE NONE missense_variant ORF1ab c.12238T>C
SRR15315457 NC_045512.2 12503 T C 141.0 2501 0.005198 0 2109,371,12,2 MODERATE NONE missense_variant ORF1ab c.12238T>C
SRR15315457 NC_045512.2 12503 T C 141.0 2501 0.005198 0 2109,371,12,2 MODERATE NONE missense_variant ORF1ab c.412T>C
SRR15315457 NC_045512.2 12503 T C 141.0 2501 0.005198 0 2109,371,12,2 MODERATE NONE missense_variant ORF1ab c.412T>C
SRR15315457 NC_045512.2 12505 TA T 239.0 2523 0.005945 0 2135,403,13,2 HIGH NONE frameshift_variant ORF1ab c.12245delA
SRR15315457 NC_045512.2 12505 TA T 239.0 2523 0.005945 0 2135,403,13,2 HIGH NONE frameshift_variant ORF1ab c.12245delA
SRR15315457 NC_045512.2 12505 TA T 239.0 2523 0.005945 0 2135,403,13,2 HIGH NONE frameshift_variant ORF1ab c.419delA
SRR15315457 NC_045512.2 12505 TA T 239.0 2523 0.005945 0 2135,403,13,2 HIGH NONE frameshift_variant ORF1ab c.419delA
SRR15315457 NC_045512.2 12584 A T 148.0 3061 0.005227 2 1575,1467,7,9 HIGH NONE stop_gained ORF1ab c.12319A>T
SRR15315457 NC_045512.2 12584 A T 148.0 3061 0.005227 2 1575,1467,7,9 HIGH NONE stop_gained ORF1ab c.12319A>T
SRR15315457 NC_045512.2 12584 A T 148.0 3061 0.005227 2 1575,1467,7,9 HIGH NONE stop_gained ORF1ab c.493A>T
SRR15315457 NC_045512.2 12584 A T 148.0 3061 0.005227 2 1575,1467,7,9 HIGH NONE stop_gained ORF1ab c.493A>T
SRR15315457 NC_045512.2 12768 C A 195.0 6772 0.003396 19 4356,2387,23,3 MODERATE NONE missense_variant ORF1ab c.12503C>A
SRR15315457 NC_045512.2 12768 C A 195.0 6772 0.003396 19 4356,2387,23,3 MODERATE NONE missense_variant ORF1ab c.12503C>A
SRR15315457 NC_045512.2 12768 C A 195.0 6772 0.003396 19 4356,2387,23,3 MODERATE NONE missense_variant ORF1ab c.83C>A
SRR15315457 NC_045512.2 12768 C A 195.0 6772 0.003396 19 4356,2387,23,3 MODERATE NONE missense_variant ORF1ab c.83C>A
SRR15315457 NC_045512.2 12778 C T 49314.0 7013 0.980037 0 2,1,4642,2366 LOW NONE synonymous_variant ORF1ab c.12513C>T
SRR15315457 NC_045512.2 12778 C T 49314.0 7013 0.980037 0 2,1,4642,2366 LOW NONE synonymous_variant ORF1ab c.12513C>T
SRR15315457 NC_045512.2 12778 C T 49314.0 7013 0.980037 0 2,1,4642,2366 LOW NONE synonymous_variant ORF1ab c.93C>T
SRR15315457 NC_045512.2 12778 C T 49314.0 7013 0.980037 0 2,1,4642,2366 LOW NONE synonymous_variant ORF1ab c.93C>T
SRR15315457 NC_045512.2 12796 AG A 395.0 6085 0.004108 12 4093,2182,21,4 HIGH NONE frameshift_variant ORF1ab c.12533delG
SRR15315457 NC_045512.2 12796 AG A 395.0 6085 0.004108 12 4093,2182,21,4 HIGH NONE frameshift_variant ORF1ab c.12533delG
SRR15315457 NC_045512.2 12796 AG A 395.0 6085 0.004108 12 4093,2182,21,4 HIGH NONE frameshift_variant ORF1ab c.113delG
SRR15315457 NC_045512.2 12796 AG A 395.0 6085 0.004108 12 4093,2182,21,4 HIGH NONE frameshift_variant ORF1ab c.113delG
SRR15315457 NC_045512.2 12925 TA T 57.0 4643 0.001077 7 1950,2718,4,1 HIGH NONE frameshift_variant ORF1ab c.12663delA
SRR15315457 NC_045512.2 12925 TA T 57.0 4643 0.001077 7 1950,2718,4,1 HIGH NONE frameshift_variant ORF1ab c.12663delA
SRR15315457 NC_045512.2 12925 TA T 57.0 4643 0.001077 7 1950,2718,4,1 HIGH NONE frameshift_variant ORF1ab c.243delA
SRR15315457 NC_045512.2 12925 TA T 57.0 4643 0.001077 7 1950,2718,4,1 HIGH NONE frameshift_variant ORF1ab c.243delA
SRR15315457 NC_045512.2 12937 A G 390.0 4782 0.007528 8 1923,2820,10,27 LOW NONE synonymous_variant ORF1ab c.12672A>G
SRR15315457 NC_045512.2 12937 A G 390.0 4782 0.007528 8 1923,2820,10,27 LOW NONE synonymous_variant ORF1ab c.12672A>G
SRR15315457 NC_045512.2 12937 A G 390.0 4782 0.007528 8 1923,2820,10,27 LOW NONE synonymous_variant ORF1ab c.252A>G
SRR15315457 NC_045512.2 12937 A G 390.0 4782 0.007528 8 1923,2820,10,27 LOW NONE synonymous_variant ORF1ab c.252A>G
SRR15315457 NC_045512.2 13011 C G 338.0 5987 0.005512 19 2166,3787,5,28 MODERATE NONE missense_variant ORF1ab c.12746C>G
SRR15315457 NC_045512.2 13011 C G 338.0 5987 0.005512 19 2166,3787,5,28 MODERATE NONE missense_variant ORF1ab c.12746C>G
SRR15315457 NC_045512.2 13011 C G 338.0 5987 0.005512 19 2166,3787,5,28 MODERATE NONE missense_variant ORF1ab c.326C>G
SRR15315457 NC_045512.2 13011 C G 338.0 5987 0.005512 19 2166,3787,5,28 MODERATE NONE missense_variant ORF1ab c.326C>G
SRR15315457 NC_045512.2 13350 GT G 67.0 2241 0.002231 7 347,1962,2,3 HIGH NONE frameshift_variant ORF1ab c.13089delT
SRR15315457 NC_045512.2 13350 GT G 67.0 2241 0.002231 7 347,1962,2,3 HIGH NONE frameshift_variant ORF1ab c.13089delT
SRR15315457 NC_045512.2 13350 GT G 67.0 2241 0.002231 7 347,1962,2,3 HIGH NONE frameshift_variant ORF1ab c.330delT
SRR15315457 NC_045512.2 13350 GT G 67.0 2241 0.002231 7 347,1962,2,3 HIGH NONE frameshift_variant ORF1ab c.330delT
SRR15315457 NC_045512.2 13661 GAC G 849.0 1955 0.019437 13 1690,230,29,9 HIGH NONE frameshift_variant ORF1ab c.13402_13403delAC
SRR15315457 NC_045512.2 13661 GAC G 849.0 1955 0.019437 13 1690,230,29,9 HIGH NONE frameshift_variant ORF1ab c.226_227delAC
SRR15315457 NC_045512.2 13688 A G 158.0 2033 0.00787 2 1628,387,13,4 MODERATE NONE missense_variant ORF1ab c.13424A>G
SRR15315457 NC_045512.2 13688 A G 158.0 2033 0.00787 2 1628,387,13,4 MODERATE NONE missense_variant ORF1ab c.248A>G
SRR15315457 NC_045512.2 13860 C T 49314.0 2755 0.980036 4 1,0,977,1777 LOW NONE synonymous_variant ORF1ab c.13596C>T
SRR15315457 NC_045512.2 13860 C T 49314.0 2755 0.980036 4 1,0,977,1777 LOW NONE synonymous_variant ORF1ab c.420C>T
SRR15315457 NC_045512.2 13870 GA G 542.0 2669 0.010491 2 826,1874,10,18 HIGH NONE frameshift_variant ORF1ab c.13609delA
SRR15315457 NC_045512.2 13870 GA G 542.0 2669 0.010491 2 826,1874,10,18 HIGH NONE frameshift_variant ORF1ab c.433delA
SRR15315457 NC_045512.2 13884 AT A 53.0 2527 0.001583 2 622,1934,0,4 HIGH NONE frameshift_variant ORF1ab c.13621delT
SRR15315457 NC_045512.2 13884 AT A 53.0 2527 0.001583 2 622,1934,0,4 HIGH NONE frameshift_variant ORF1ab c.445delT
SRR15315457 NC_045512.2 14141 T C 105.0 1486 0.006057 4 618,859,2,7 MODERATE NONE missense_variant ORF1ab c.13877T>C
SRR15315457 NC_045512.2 14141 T C 105.0 1486 0.006057 4 618,859,2,7 MODERATE NONE missense_variant ORF1ab c.701T>C
SRR15315457 NC_045512.2 14246 A T 148.0 3530 0.004249 6 2538,967,18,3 MODERATE NONE missense_variant ORF1ab c.13982A>T
SRR15315457 NC_045512.2 14246 A T 148.0 3530 0.004249 6 2538,967,18,3 MODERATE NONE missense_variant ORF1ab c.806A>T
SRR15315457 NC_045512.2 14257 T A 283.0 4009 0.006236 25 3100,879,25,0 MODERATE NONE missense_variant ORF1ab c.13993T>A
SRR15315457 NC_045512.2 14257 T A 283.0 4009 0.006236 25 3100,879,25,0 MODERATE NONE missense_variant ORF1ab c.817T>A
SRR15315457 NC_045512.2 14335 G T 303.0 5285 0.005676 9 3446,1801,19,17 MODERATE NONE missense_variant ORF1ab c.14071G>T
SRR15315457 NC_045512.2 14335 G T 303.0 5285 0.005676 9 3446,1801,19,17 MODERATE NONE missense_variant ORF1ab c.895G>T
SRR15315457 NC_045512.2 14408 C T 49314.0 5652 0.954352 0 1,1,2564,3081 MODERATE NONE missense_variant ORF1ab c.14144C>T
SRR15315457 NC_045512.2 14408 C T 49314.0 5652 0.954352 0 1,1,2564,3081 MODERATE NONE missense_variant ORF1ab c.968C>T
SRR15315457 NC_045512.2 14546 A T 86.0 3905 0.005378 7 743,3137,7,15 MODERATE NONE missense_variant ORF1ab c.14282A>T
SRR15315457 NC_045512.2 14546 A T 86.0 3905 0.005378 7 743,3137,7,15 MODERATE NONE missense_variant ORF1ab c.1106A>T
SRR15315457 NC_045512.2 14684 T C 527.0 3951 0.010377 18 2543,1361,20,23 MODERATE NONE missense_variant ORF1ab c.14420T>C
SRR15315457 NC_045512.2 14684 T C 527.0 3951 0.010377 18 2543,1361,20,23 MODERATE NONE missense_variant ORF1ab c.1244T>C
SRR15315457 NC_045512.2 14759 T C 523.0 4595 0.00914 0 2210,2338,21,23 MODERATE NONE missense_variant ORF1ab c.14495T>C
SRR15315457 NC_045512.2 14759 T C 523.0 4595 0.00914 0 2210,2338,21,23 MODERATE NONE missense_variant ORF1ab c.1319T>C
SRR15315457 NC_045512.2 14865 T G 331.0 3685 0.008955 0 501,3147,5,29 LOW NONE synonymous_variant ORF1ab c.14601T>G
SRR15315457 NC_045512.2 14865 T G 331.0 3685 0.008955 0 501,3147,5,29 LOW NONE synonymous_variant ORF1ab c.1425T>G
SRR15315457 NC_045512.2 14877 CT C 91.0 3954 0.00177 6 1383,2626,4,3 HIGH NONE frameshift_variant ORF1ab c.14616delT
SRR15315457 NC_045512.2 14877 CT C 91.0 3954 0.00177 6 1383,2626,4,3 HIGH NONE frameshift_variant ORF1ab c.1440delT
SRR15315457 NC_045512.2 14902 A G 112.0 3736 0.003747 31 1820,1902,13,1 MODERATE NONE missense_variant ORF1ab c.14638A>G
SRR15315457 NC_045512.2 14902 A G 112.0 3736 0.003747 31 1820,1902,13,1 MODERATE NONE missense_variant ORF1ab c.1462A>G
SRR15315457 NC_045512.2 14952 T C 68.0 2865 0.002792 27 2237,620,2,6 LOW NONE synonymous_variant ORF1ab c.14688T>C
SRR15315457 NC_045512.2 14952 T C 68.0 2865 0.002792 27 2237,620,2,6 LOW NONE synonymous_variant ORF1ab c.1512T>C
SRR15315457 NC_045512.2 14960 A T 67.0 2898 0.002761 29 2200,688,2,7 MODERATE NONE missense_variant ORF1ab c.14696A>T
SRR15315457 NC_045512.2 14960 A T 67.0 2898 0.002761 29 2200,688,2,7 MODERATE NONE missense_variant ORF1ab c.1520A>T
SRR15315457 NC_045512.2 14996 T G 155.0 3027 0.005286 0 2016,993,12,6 MODERATE NONE missense_variant ORF1ab c.14732T>G
SRR15315457 NC_045512.2 14996 T G 155.0 3027 0.005286 0 2016,993,12,6 MODERATE NONE missense_variant ORF1ab c.1556T>G
SRR15315457 NC_045512.2 15245 TA T 107.0 2571 0.003112 1 1783,909,6,2 HIGH NONE frameshift_variant ORF1ab c.14986delA
SRR15315457 NC_045512.2 15245 TA T 107.0 2571 0.003112 1 1783,909,6,2 HIGH NONE frameshift_variant ORF1ab c.1810delA
SRR15315457 NC_045512.2 15352 CT C 168.0 2013 0.004968 1 978,1047,4,6 HIGH NONE frameshift_variant ORF1ab c.15090delT
SRR15315457 NC_045512.2 15352 CT C 168.0 2013 0.004968 1 978,1047,4,6 HIGH NONE frameshift_variant ORF1ab c.1914delT
SRR15315457 NC_045512.2 15373 T G 84.0 1828 0.004376 2 806,1012,5,4 MODERATE NONE missense_variant ORF1ab c.15109T>G
SRR15315457 NC_045512.2 15373 T G 84.0 1828 0.004376 2 806,1012,5,4 MODERATE NONE missense_variant ORF1ab c.1933T>G
SRR15315457 NC_045512.2 15546 CA C 55.0 4518 0.001107 33 3550,976,0,5 HIGH NONE frameshift_variant ORF1ab c.15284delA
SRR15315457 NC_045512.2 15546 CA C 55.0 4518 0.001107 33 3550,976,0,5 HIGH NONE frameshift_variant ORF1ab c.2108delA
SRR15315457 NC_045512.2 15550 GT G 67.0 4650 0.00129 40 3692,975,0,6 HIGH NONE frameshift_variant ORF1ab c.15288delT
SRR15315457 NC_045512.2 15550 GT G 67.0 4650 0.00129 40 3692,975,0,6 HIGH NONE frameshift_variant ORF1ab c.2112delT
SRR15315457 NC_045512.2 15552 TA T 54.0 4642 0.001077 21 3740,952,1,4 HIGH NONE frameshift_variant ORF1ab c.15290delA
SRR15315457 NC_045512.2 15552 TA T 54.0 4642 0.001077 21 3740,952,1,4 HIGH NONE frameshift_variant ORF1ab c.2114delA
SRR15315457 NC_045512.2 15626 A G 108.0 5493 0.002549 20 3689,1785,5,10 MODERATE NONE missense_variant ORF1ab c.15362A>G
SRR15315457 NC_045512.2 15626 A G 108.0 5493 0.002549 20 3689,1785,5,10 MODERATE NONE missense_variant ORF1ab c.2186A>G
SRR15315457 NC_045512.2 15637 A G 241.0 5883 0.00425 3 3818,2030,14,11 MODERATE NONE missense_variant ORF1ab c.15373A>G
SRR15315457 NC_045512.2 15637 A G 241.0 5883 0.00425 3 3818,2030,14,11 MODERATE NONE missense_variant ORF1ab c.2197A>G
SRR15315457 NC_045512.2 15682 T A 183.0 6970 0.003156 9 3366,3574,8,17 MODERATE NONE missense_variant ORF1ab c.15418T>A
SRR15315457 NC_045512.2 15682 T A 183.0 6970 0.003156 9 3366,3574,8,17 MODERATE NONE missense_variant ORF1ab c.2242T>A
SRR15315457 NC_045512.2 15685 T A 176.0 6920 0.003035 3 3275,3618,9,15 MODERATE NONE missense_variant ORF1ab c.15421T>A
SRR15315457 NC_045512.2 15685 T A 176.0 6920 0.003035 3 3275,3618,9,15 MODERATE NONE missense_variant ORF1ab c.2245T>A
SRR15315457 NC_045512.2 15731 T C 219.0 5836 0.004455 5 1827,3974,11,16 MODERATE NONE missense_variant ORF1ab c.15467T>C
SRR15315457 NC_045512.2 15731 T C 219.0 5836 0.004455 5 1827,3974,11,16 MODERATE NONE missense_variant ORF1ab c.2291T>C
SRR15315457 NC_045512.2 15784 T TGAC 60.0 4009 0.001247 2 813,3280,0,5 HIGH NONE stop_gained&disruptive_inframe_insertion ORF1ab c.15520_15521insGAC
SRR15315457 NC_045512.2 15784 T TGAC 60.0 4009 0.001247 2 813,3280,0,5 HIGH NONE stop_gained&disruptive_inframe_insertion ORF1ab c.2344_2345insGAC
SRR15315457 NC_045512.2 15788 AGTC A 57.0 3821 0.001309 2 699,3211,0,5 MODERATE NONE disruptive_inframe_deletion ORF1ab c.15525_15527delGTC
SRR15315457 NC_045512.2 15788 AGTC A 57.0 3821 0.001309 2 699,3211,0,5 MODERATE NONE disruptive_inframe_deletion ORF1ab c.2349_2351delGTC
SRR15315457 NC_045512.2 15822 G C 180.0 3270 0.005199 4 258,2988,0,17 MODERATE NONE missense_variant ORF1ab c.15558G>C
SRR15315457 NC_045512.2 15822 G C 180.0 3270 0.005199 4 258,2988,0,17 MODERATE NONE missense_variant ORF1ab c.2382G>C
SRR15315457 NC_045512.2 15838 TG T 60.0 4035 0.001239 22 1412,2665,5,0 HIGH NONE frameshift_variant ORF1ab c.15576delG
SRR15315457 NC_045512.2 15838 TG T 60.0 4035 0.001239 22 1412,2665,5,0 HIGH NONE frameshift_variant ORF1ab c.2400delG
SRR15315457 NC_045512.2 16090 T C 473.0 6389 0.00673 1 1874,4467,12,33 MODERATE NONE missense_variant ORF1ab c.15826T>C
SRR15315457 NC_045512.2 16090 T C 473.0 6389 0.00673 1 1874,4467,12,33 MODERATE NONE missense_variant ORF1ab c.2650T>C
SRR15315457 NC_045512.2 16097 A T 569.0 5954 0.00823 1 1478,4421,15,38 MODERATE NONE missense_variant ORF1ab c.15833A>T
SRR15315457 NC_045512.2 16097 A T 569.0 5954 0.00823 1 1478,4421,15,38 MODERATE NONE missense_variant ORF1ab c.2657A>T
SRR15315457 NC_045512.2 16299 TA T 628.0 4295 0.007916 7 2320,1966,14,20 HIGH NONE frameshift_variant ORF1ab c.16036delA
SRR15315457 NC_045512.2 16299 TA T 628.0 4295 0.007916 7 2320,1966,14,20 HIGH NONE frameshift_variant ORF1ab c.64delA
SRR15315457 NC_045512.2 16380 T C 459.0 3880 0.009278 1 1364,2478,14,22 LOW NONE synonymous_variant ORF1ab c.16116T>C
SRR15315457 NC_045512.2 16380 T C 459.0 3880 0.009278 1 1364,2478,14,22 LOW NONE synonymous_variant ORF1ab c.144T>C
SRR15315457 NC_045512.2 16501 GT G 84.0 3148 0.002224 0 2169,1022,5,2 HIGH NONE frameshift_variant ORF1ab c.16242delT
SRR15315457 NC_045512.2 16501 GT G 84.0 3148 0.002224 0 2169,1022,5,2 HIGH NONE frameshift_variant ORF1ab c.270delT
SRR15315457 NC_045512.2 16556 A G 227.0 3169 0.006311 3 2056,1091,12,9 MODERATE NONE missense_variant ORF1ab c.16292A>G
SRR15315457 NC_045512.2 16556 A G 227.0 3169 0.006311 3 2056,1091,12,9 MODERATE NONE missense_variant ORF1ab c.320A>G
SRR15315457 NC_045512.2 16786 G A 360.0 3247 0.009239 10 1359,1853,8,22 MODERATE NONE missense_variant ORF1ab c.16522G>A
SRR15315457 NC_045512.2 16786 G A 360.0 3247 0.009239 10 1359,1853,8,22 MODERATE NONE missense_variant ORF1ab c.550G>A
SRR15315457 NC_045512.2 16866 T C 111.0 3619 0.003592 4 2473,1130,11,2 LOW NONE synonymous_variant ORF1ab c.16602T>C
SRR15315457 NC_045512.2 16866 T C 111.0 3619 0.003592 4 2473,1130,11,2 LOW NONE synonymous_variant ORF1ab c.630T>C
SRR15315457 NC_045512.2 16875 TACA T 346.0 3716 0.005382 10 2419,1333,9,11 MODERATE NONE disruptive_inframe_deletion ORF1ab c.16617_16619delAAC
SRR15315457 NC_045512.2 16875 TACA T 346.0 3716 0.005382 10 2419,1333,9,11 MODERATE NONE disruptive_inframe_deletion ORF1ab c.645_647delAAC
SRR15315457 NC_045512.2 16987 G T 103.0 4722 0.002753 2 1986,2719,6,11 MODERATE NONE missense_variant ORF1ab c.16723G>T
SRR15315457 NC_045512.2 16987 G T 103.0 4722 0.002753 2 1986,2719,6,11 MODERATE NONE missense_variant ORF1ab c.751G>T
SRR15315457 NC_045512.2 17105 AT A 153.0 5536 0.002168 17 2862,2700,2,10 HIGH NONE frameshift_variant ORF1ab c.16845delT
SRR15315457 NC_045512.2 17105 AT A 153.0 5536 0.002168 17 2862,2700,2,10 HIGH NONE frameshift_variant ORF1ab c.873delT
SRR15315457 NC_045512.2 17259 G T 49314.0 5078 0.956282 6 3,0,2600,2474 MODERATE NONE missense_variant ORF1ab c.16995G>T
SRR15315457 NC_045512.2 17259 G T 49314.0 5078 0.956282 6 3,0,2600,2474 MODERATE NONE missense_variant ORF1ab c.1023G>T
SRR15315457 NC_045512.2 17381 A AT 106.0 4305 0.001858 2 660,3670,0,8 HIGH NONE frameshift_variant&stop_gained ORF1ab c.17118dupT
SRR15315457 NC_045512.2 17381 A AT 106.0 4305 0.001858 2 660,3670,0,8 HIGH NONE frameshift_variant&stop_gained ORF1ab c.1146dupT
SRR15315457 NC_045512.2 17523 GAA G 226.0 5078 0.003151 2 3228,1877,9,7 HIGH NONE frameshift_variant ORF1ab c.17262_17263delAA
SRR15315457 NC_045512.2 17523 GAA G 226.0 5078 0.003151 2 3228,1877,9,7 HIGH NONE frameshift_variant ORF1ab c.1290_1291delAA
SRR15315457 NC_045512.2 17523 G A 220.0 5121 0.004687 8 3224,1868,12,13 MODERATE NONE missense_variant ORF1ab c.17259G>A
SRR15315457 NC_045512.2 17523 G A 220.0 5121 0.004687 8 3224,1868,12,13 MODERATE NONE missense_variant ORF1ab c.1287G>A
SRR15315457 NC_045512.2 17543 T A 86.0 5595 0.002145 12 3191,2385,6,12 MODERATE NONE missense_variant ORF1ab c.17279T>A
SRR15315457 NC_045512.2 17543 T A 86.0 5595 0.002145 12 3191,2385,6,12 MODERATE NONE missense_variant ORF1ab c.1307T>A
SRR15315457 NC_045512.2 17556 T A 76.0 5870 0.001874 7 2986,2869,10,4 LOW NONE synonymous_variant ORF1ab c.17292T>A
SRR15315457 NC_045512.2 17556 T A 76.0 5870 0.001874 7 2986,2869,10,4 LOW NONE synonymous_variant ORF1ab c.1320T>A
SRR15315457 NC_045512.2 17567 G GAT 99.0 6147 0.002928 1 2928,3278,7,11 HIGH NONE frameshift_variant&stop_gained ORF1ab c.17303_17304insAT
SRR15315457 NC_045512.2 17567 G GAT 99.0 6147 0.002928 1 2928,3278,7,11 HIGH NONE frameshift_variant&stop_gained ORF1ab c.1331_1332insAT
SRR15315457 NC_045512.2 17568 TCCTG T 99.0 6153 0.002925 1 2904,3300,7,11 HIGH NONE frameshift_variant ORF1ab c.17306_17309delCTGC
SRR15315457 NC_045512.2 17568 TCCTG T 99.0 6153 0.002925 1 2904,3300,7,11 HIGH NONE frameshift_variant ORF1ab c.1334_1337delCTGC
SRR15315457 NC_045512.2 17571 T C 211.0 6225 0.003855 3 2911,3268,14,11 LOW NONE synonymous_variant ORF1ab c.17307T>C
SRR15315457 NC_045512.2 17571 T C 211.0 6225 0.003855 3 2911,3268,14,11 LOW NONE synonymous_variant ORF1ab c.1335T>C
SRR15315457 NC_045512.2 17614 A T 327.0 5117 0.005863 7 1915,3170,8,24 HIGH NONE stop_gained ORF1ab c.17350A>T
SRR15315457 NC_045512.2 17614 A T 327.0 5117 0.005863 7 1915,3170,8,24 HIGH NONE stop_gained ORF1ab c.1378A>T
SRR15315457 NC_045512.2 17756 GAA G 144.0 4392 0.002505 13 3332,1288,11,0 HIGH NONE frameshift_variant ORF1ab c.17495_17496delAA
SRR15315457 NC_045512.2 17756 GAA G 144.0 4392 0.002505 13 3332,1288,11,0 HIGH NONE frameshift_variant ORF1ab c.1523_1524delAA
SRR15315457 NC_045512.2 17800 G C 150.0 4522 0.003981 3 3064,1434,15,4 MODERATE NONE missense_variant ORF1ab c.17536G>C
SRR15315457 NC_045512.2 17800 G C 150.0 4522 0.003981 3 3064,1434,15,4 MODERATE NONE missense_variant ORF1ab c.1564G>C
SRR15315457 NC_045512.2 17924 T G 205.0 4183 0.004781 0 1524,2636,7,15 MODERATE NONE missense_variant ORF1ab c.17660T>G
SRR15315457 NC_045512.2 17924 T G 205.0 4183 0.004781 0 1524,2636,7,15 MODERATE NONE missense_variant ORF1ab c.1688T>G
SRR15315457 NC_045512.2 18006 T C 110.0 5442 0.00294 0 2596,2819,9,8 LOW NONE synonymous_variant ORF1ab c.17742T>C
SRR15315457 NC_045512.2 18006 T C 110.0 5442 0.00294 0 2596,2819,9,8 LOW NONE synonymous_variant ORF1ab c.1770T>C
SRR15315457 NC_045512.2 18123 T C 156.0 4728 0.003807 7 2583,2125,13,5 LOW NONE synonymous_variant ORF1ab c.17859T>C
SRR15315457 NC_045512.2 18123 T C 156.0 4728 0.003807 7 2583,2125,13,5 LOW NONE synonymous_variant ORF1ab c.84T>C
SRR15315457 NC_045512.2 18154 T G 168.0 5174 0.003672 0 2847,2304,12,9 MODERATE NONE missense_variant ORF1ab c.17890T>G
SRR15315457 NC_045512.2 18154 T G 168.0 5174 0.003672 0 2847,2304,12,9 MODERATE NONE missense_variant ORF1ab c.115T>G
SRR15315457 NC_045512.2 18315 G A 563.0 6613 0.00741 26 3416,3141,39,14 LOW NONE synonymous_variant ORF1ab c.18051G>A
SRR15315457 NC_045512.2 18315 G A 563.0 6613 0.00741 26 3416,3141,39,14 LOW NONE synonymous_variant ORF1ab c.276G>A
SRR15315457 NC_045512.2 18434 A AT 60.0 4653 0.001289 9 2533,2148,1,5 HIGH NONE frameshift_variant ORF1ab c.18175dupT
SRR15315457 NC_045512.2 18434 A AT 60.0 4653 0.001289 9 2533,2148,1,5 HIGH NONE frameshift_variant ORF1ab c.400dupT
SRR15315457 NC_045512.2 18561 TA T 474.0 4872 0.006158 2 1472,3421,7,23 HIGH NONE frameshift_variant ORF1ab c.18302delA
SRR15315457 NC_045512.2 18561 TA T 474.0 4872 0.006158 2 1472,3421,7,23 HIGH NONE frameshift_variant ORF1ab c.527delA
SRR15315457 NC_045512.2 18635 T C 556.0 5008 0.010383 19 2426,2506,18,39 MODERATE NONE missense_variant ORF1ab c.18371T>C
SRR15315457 NC_045512.2 18635 T C 556.0 5008 0.010383 19 2426,2506,18,39 MODERATE NONE missense_variant ORF1ab c.596T>C
SRR15315457 NC_045512.2 18635 T G 86.0 5008 0.003594 28 2426,2506,2,16 MODERATE NONE missense_variant ORF1ab c.18371T>G
SRR15315457 NC_045512.2 18635 T G 86.0 5008 0.003594 28 2426,2506,2,16 MODERATE NONE missense_variant ORF1ab c.596T>G
SRR15315457 NC_045512.2 18756 GT G 526.0 5047 0.005944 0 2920,2170,18,12 HIGH NONE frameshift_variant ORF1ab c.18495delT
SRR15315457 NC_045512.2 18756 GT G 526.0 5047 0.005944 0 2920,2170,18,12 HIGH NONE frameshift_variant ORF1ab c.720delT
SRR15315457 NC_045512.2 18853 T C 566.0 7491 0.006942 2 2868,4568,22,30 MODERATE NONE missense_variant ORF1ab c.18589T>C
SRR15315457 NC_045512.2 18853 T C 566.0 7491 0.006942 2 2868,4568,22,30 MODERATE NONE missense_variant ORF1ab c.814T>C
SRR15315457 NC_045512.2 18894 CT C 952.0 6014 0.00848 0 1543,4495,13,38 HIGH NONE frameshift_variant ORF1ab c.18633delT
SRR15315457 NC_045512.2 18894 CT C 952.0 6014 0.00848 0 1543,4495,13,38 HIGH NONE frameshift_variant ORF1ab c.858delT
SRR15315457 NC_045512.2 19132 G T 86.0 4997 0.002401 0 2129,2849,8,11 HIGH NONE stop_gained ORF1ab c.18868G>T
SRR15315457 NC_045512.2 19132 G T 86.0 4997 0.002401 0 2129,2849,8,11 HIGH NONE stop_gained ORF1ab c.1093G>T
SRR15315457 NC_045512.2 19137 A C 76.0 4970 0.002213 3 2017,2939,4,10 MODERATE NONE missense_variant ORF1ab c.18873A>C
SRR15315457 NC_045512.2 19137 A C 76.0 4970 0.002213 3 2017,2939,4,10 MODERATE NONE missense_variant ORF1ab c.1098A>C
SRR15315457 NC_045512.2 19452 T A 73.0 2289 0.003495 10 1004,1275,1,8 LOW NONE synonymous_variant ORF1ab c.19188T>A
SRR15315457 NC_045512.2 19452 T A 73.0 2289 0.003495 10 1004,1275,1,8 LOW NONE synonymous_variant ORF1ab c.1413T>A
SRR15315457 NC_045512.2 19468 T A 86.0 2332 0.003859 15 1010,1311,8,2 MODERATE NONE missense_variant ORF1ab c.19204T>A
SRR15315457 NC_045512.2 19468 T A 86.0 2332 0.003859 15 1010,1311,8,2 MODERATE NONE missense_variant ORF1ab c.1429T>A
SRR15315457 NC_045512.2 19557 TA T 76.0 1805 0.00277 29 481,1359,5,0 HIGH NONE frameshift_variant ORF1ab c.19294delA
SRR15315457 NC_045512.2 19557 TA T 76.0 1805 0.00277 29 481,1359,5,0 HIGH NONE frameshift_variant ORF1ab c.1519delA
SRR15315457 NC_045512.2 19560 CT C 59.0 1726 0.002317 23 460,1290,4,0 HIGH NONE frameshift_variant ORF1ab c.19298delT
SRR15315457 NC_045512.2 19560 CT C 59.0 1726 0.002317 23 460,1290,4,0 HIGH NONE frameshift_variant ORF1ab c.1523delT
SRR15315457 NC_045512.2 19693 T C 76.0 840 0.007143 10 464,369,1,5 MODERATE NONE missense_variant ORF1ab c.19429T>C
SRR15315457 NC_045512.2 19693 T C 76.0 840 0.007143 10 464,369,1,5 MODERATE NONE missense_variant ORF1ab c.73T>C
SRR15315457 NC_045512.2 19731 T G 81.0 908 0.007709 11 461,437,7,1 LOW NONE synonymous_variant ORF1ab c.19467T>G
SRR15315457 NC_045512.2 19731 T G 81.0 908 0.007709 11 461,437,7,1 LOW NONE synonymous_variant ORF1ab c.111T>G
SRR15315457 NC_045512.2 19732 G T 73.0 915 0.006557 11 461,446,7,1 MODERATE NONE missense_variant ORF1ab c.19468G>T
SRR15315457 NC_045512.2 19732 G T 73.0 915 0.006557 11 461,446,7,1 MODERATE NONE missense_variant ORF1ab c.112G>T
SRR15315457 NC_045512.2 19743 A AT 329.0 943 0.015907 5 470,466,10,5 HIGH NONE frameshift_variant ORF1ab c.19481dupT
SRR15315457 NC_045512.2 19743 A AT 329.0 943 0.015907 5 470,466,10,5 HIGH NONE frameshift_variant ORF1ab c.125dupT
SRR15315457 NC_045512.2 19790 T C 111.0 1021 0.008815 18 459,551,8,1 MODERATE NONE missense_variant ORF1ab c.19526T>C
SRR15315457 NC_045512.2 19790 T C 111.0 1021 0.008815 18 459,551,8,1 MODERATE NONE missense_variant ORF1ab c.170T>C
SRR15315457 NC_045512.2 19904 A G 489.0 1479 0.02096 10 908,539,25,7 MODERATE NONE missense_variant ORF1ab c.19640A>G
SRR15315457 NC_045512.2 19904 A G 489.0 1479 0.02096 10 908,539,25,7 MODERATE NONE missense_variant ORF1ab c.284A>G
SRR15315457 NC_045512.2 20069 GT G 61.0 1609 0.002486 8 750,869,0,4 HIGH NONE frameshift_variant ORF1ab c.19808delT
SRR15315457 NC_045512.2 20069 GT G 61.0 1609 0.002486 8 750,869,0,4 HIGH NONE frameshift_variant ORF1ab c.452delT
SRR15315457 NC_045512.2 20075 A T 344.0 1613 0.014879 1 733,853,13,13 MODERATE NONE missense_variant ORF1ab c.19811A>T
SRR15315457 NC_045512.2 20075 A T 344.0 1613 0.014879 1 733,853,13,13 MODERATE NONE missense_variant ORF1ab c.455A>T
SRR15315457 NC_045512.2 20178 CCAA C 533.0 1396 0.017192 5 635,756,8,16 MODERATE NONE conservative_inframe_deletion ORF1ab c.19918_19920delCAA
SRR15315457 NC_045512.2 20178 CCAA C 533.0 1396 0.017192 5 635,756,8,16 MODERATE NONE conservative_inframe_deletion ORF1ab c.562_564delCAA
SRR15315457 NC_045512.2 20284 A T 363.0 2168 0.011993 0 1515,625,18,8 MODERATE NONE missense_variant ORF1ab c.20020A>T
SRR15315457 NC_045512.2 20284 A T 363.0 2168 0.011993 0 1515,625,18,8 MODERATE NONE missense_variant ORF1ab c.664A>T
SRR15315457 NC_045512.2 20300 T C 372.0 2445 0.011043 1 1520,896,16,11 MODERATE NONE missense_variant ORF1ab c.20036T>C
SRR15315457 NC_045512.2 20300 T C 372.0 2445 0.011043 1 1520,896,16,11 MODERATE NONE missense_variant ORF1ab c.680T>C
SRR15315457 NC_045512.2 20407 TTTGAATTAGAAGA T 317.0 2180 0.007798 0 869,1326,6,11 HIGH NONE frameshift_variant ORF1ab c.20146_20158delGAATTAGAAGATT
SRR15315457 NC_045512.2 20407 TTTGAATTAGAAGA T 317.0 2180 0.007798 0 869,1326,6,11 HIGH NONE frameshift_variant ORF1ab c.790_802delGAATTAGAAGATT
SRR15315457 NC_045512.2 20424 TATTCCTA T 302.0 1992 0.008032 2 800,1216,5,11 HIGH NONE frameshift_variant ORF1ab c.20161_20167delATTCCTA
SRR15315457 NC_045512.2 20424 TATTCCTA T 302.0 1992 0.008032 2 800,1216,5,11 HIGH NONE frameshift_variant ORF1ab c.805_811delATTCCTA
SRR15315457 NC_045512.2 20514 A G 306.0 2156 0.010668 20 856,1277,3,20 LOW NONE synonymous_variant ORF1ab c.20250A>G
SRR15315457 NC_045512.2 20514 A G 306.0 2156 0.010668 20 856,1277,3,20 LOW NONE synonymous_variant ORF1ab c.894A>G
SRR15315457 NC_045512.2 20538 A G 184.0 2181 0.007795 36 1230,933,2,15 MODERATE NONE missense_variant ORF1ab c.20274A>G
SRR15315457 NC_045512.2 20538 A G 184.0 2181 0.007795 36 1230,933,2,15 MODERATE NONE missense_variant ORF1ab c.918A>G
SRR15315457 NC_045512.2 20616 G C 225.0 1370 0.011679 0 814,534,9,7 MODERATE NONE missense_variant ORF1ab c.20352G>C
SRR15315457 NC_045512.2 20616 G C 225.0 1370 0.011679 0 814,534,9,7 MODERATE NONE missense_variant ORF1ab c.996G>C
SRR15315457 NC_045512.2 20661 T C 358.0 1527 0.015717 1 750,753,13,11 LOW NONE synonymous_variant ORF1ab c.20397T>C
SRR15315457 NC_045512.2 20661 T C 358.0 1527 0.015717 1 750,753,13,11 LOW NONE synonymous_variant ORF1ab c.3T>C
SRR15315457 NC_045512.2 20713 A C 286.0 1649 0.013341 1 745,879,12,12 LOW NONE synonymous_variant ORF1ab c.20449A>C
SRR15315457 NC_045512.2 20713 A C 286.0 1649 0.013341 1 745,879,12,12 LOW NONE synonymous_variant ORF1ab c.55A>C
SRR15315457 NC_045512.2 20841 A G 108.0 2588 0.00425 40 1482,1092,0,11 LOW NONE synonymous_variant ORF1ab c.20577A>G
SRR15315457 NC_045512.2 20841 A G 108.0 2588 0.00425 40 1482,1092,0,11 LOW NONE synonymous_variant ORF1ab c.183A>G
SRR15315457 NC_045512.2 21255 G GT 531.0 3383 0.008277 2 1704,1690,16,12 HIGH NONE frameshift_variant ORF1ab c.20992dupT
SRR15315457 NC_045512.2 21255 G GT 531.0 3383 0.008277 2 1704,1690,16,12 HIGH NONE frameshift_variant ORF1ab c.598dupT
SRR15315457 NC_045512.2 21383 A T 132.0 2818 0.004613 18 865,1940,0,13 MODERATE NONE missense_variant ORF1ab c.21119A>T
SRR15315457 NC_045512.2 21383 A T 132.0 2818 0.004613 18 865,1940,0,13 MODERATE NONE missense_variant ORF1ab c.725A>T
SRR15315457 NC_045512.2 21387 T C 289.0 2786 0.008256 7 869,1893,4,19 LOW NONE synonymous_variant ORF1ab c.21123T>C
SRR15315457 NC_045512.2 21387 T C 289.0 2786 0.008256 7 869,1893,4,19 LOW NONE synonymous_variant ORF1ab c.729T>C
SRR15315457 NC_045512.2 21485 G A 246.0 1156 0.014706 3 758,379,13,4 MODERATE NONE missense_variant ORF1ab c.21221G>A
SRR15315457 NC_045512.2 21485 G A 246.0 1156 0.014706 3 758,379,13,4 MODERATE NONE missense_variant ORF1ab c.827G>A
SRR15315457 NC_045512.2 21526 AT A 588.0 1327 0.019593 0 677,659,14,12 HIGH NONE frameshift_variant ORF1ab c.21265delT
SRR15315457 NC_045512.2 21526 AT A 588.0 1327 0.019593 0 677,659,14,12 HIGH NONE frameshift_variant ORF1ab c.871delT
SRR15315457 NC_045512.2 21558 G A 114.0 1372 0.007289 1 676,684,4,6 MODIFIER NONE intergenic_region ORF1ab-S n.21558G>A
SRR15315457 NC_045512.2 21563 A T 94.0 1351 0.006662 0 649,693,4,5 LOW NONE initiator_codon_variant S c.1A>T
SRR15315457 NC_045512.2 21568 T C 84.0 1346 0.005944 0 636,699,4,4 LOW NONE synonymous_variant S c.6T>C
SRR15315457 NC_045512.2 21608 GTTA G 167.0 1240 0.008871 2 628,623,7,4 MODERATE NONE disruptive_inframe_deletion S c.47_49delTTA
SRR15315457 NC_045512.2 21614 C T 45085.0 1311 0.983219 0 0,0,621,689 MODERATE NONE missense_variant S c.52C>T
SRR15315457 NC_045512.2 21621 C A 46538.0 1407 0.948827 0 0,0,599,808 MODERATE NONE missense_variant S c.59C>A
SRR15315457 NC_045512.2 21638 C T 49314.0 1506 0.952191 12 4,22,502,978 MODERATE NONE missense_variant S c.76C>T
SRR15315457 NC_045512.2 21692 A G 132.0 1979 0.00758 27 842,1116,1,16 MODERATE NONE missense_variant S c.130A>G
SRR15315457 NC_045512.2 21817 AT A 395.0 1443 0.013167 0 628,811,8,11 HIGH NONE frameshift_variant S c.258delT
SRR15315457 NC_045512.2 21974 G T 36151.0 1023 0.978495 33 3,4,23,992 MODERATE NONE missense_variant S c.412G>T
SRR15315457 NC_045512.2 21981 TTTTG T 133.0 907 0.007718 9 15,895,1,6 HIGH NONE frameshift_variant S c.420_423delTTTG
SRR15315457 NC_045512.2 22380 G A 737.0 4402 0.01204 1 3111,1230,40,13 MODERATE NONE missense_variant S c.818G>A
SRR15315457 NC_045512.2 22411 A G 556.0 4412 0.009973 3 2829,1536,28,19 LOW NONE synonymous_variant S c.849A>G
SRR15315457 NC_045512.2 22585 TTTTA T 475.0 6324 0.004586 40 2548,3787,2,27 HIGH NONE frameshift_variant S c.1024_1027delTTTA
SRR15315457 NC_045512.2 22659 C A 117.0 2315 0.004752 0 1413,887,8,5 MODERATE NONE missense_variant S c.1097C>A
SRR15315457 NC_045512.2 22794 C T 84.0 2604 0.003456 11 712,1882,0,10 MODERATE NONE missense_variant S c.1232C>T
SRR15315457 NC_045512.2 22812 A C 49314.0 2489 0.782644 2452 458,15,361,1655 MODERATE NONE missense_variant S c.1250A>C
SRR15315457 NC_045512.2 22944 T C 110.0 823 0.009721 1 451,364,5,3 MODERATE NONE missense_variant S c.1382T>C
SRR15315457 NC_045512.2 22960 A T 126.0 815 0.011043 1 438,367,6,4 MODERATE NONE missense_variant S c.1398A>T
SRR15315457 NC_045512.2 23011 TG T 318.0 903 0.017719 0 430,469,7,9 HIGH NONE frameshift_variant S c.1450delG
SRR15315457 NC_045512.2 23012 G A 30886.0 916 0.965065 0 0,0,427,471 MODERATE NONE missense_variant S c.1450G>A
SRR15315457 NC_045512.2 23037 T C 106.0 912 0.008772 2 396,507,5,4 MODERATE NONE missense_variant S c.1475T>C
SRR15315457 NC_045512.2 23063 A T 31240.0 889 0.974128 0 0,0,377,512 MODERATE NONE missense_variant S c.1501A>T
SRR15315457 NC_045512.2 23243 C T 70.0 4785 0.002508 1 3392,1377,10,3 MODERATE NONE missense_variant S c.1681C>T
SRR15315457 NC_045512.2 23264 G A 142.0 5303 0.003206 29 3409,1867,17,0 MODERATE NONE missense_variant S c.1702G>A
SRR15315457 NC_045512.2 23278 TAC T 350.0 5507 0.003995 0 3421,2132,13,9 HIGH NONE frameshift_variant S c.1717_1718delAC
SRR15315457 NC_045512.2 23307 T G 287.0 5271 0.005312 2 2676,2562,17,13 MODERATE NONE missense_variant S c.1745T>G
SRR15315457 NC_045512.2 23403 A G 49314.0 3938 0.976384 0 0,0,1108,2827 MODERATE NONE missense_variant S c.1841A>G
SRR15315457 NC_045512.2 23408 AACTGCACAGAAGTCCCTG A 61.0 3846 0.0013 2 1076,2836,2,3 MODERATE NONE disruptive_inframe_deletion S c.1847_1864delACTGCACAGAAGTCCCTG
SRR15315457 NC_045512.2 23430 C T 108.0 3462 0.003466 1 676,2769,3,9 MODERATE NONE missense_variant S c.1868C>T
SRR15315457 NC_045512.2 23446 A G 176.0 3946 0.004815 12 951,2971,1,18 LOW NONE synonymous_variant S c.1884A>G
SRR15315457 NC_045512.2 23525 C T 49314.0 2444 0.960311 23 1,4,1997,439 MODERATE NONE missense_variant S c.1963C>T
SRR15315457 NC_045512.2 23536 C T 298.0 2644 0.009455 3 1999,617,19,8 LOW NONE synonymous_variant S c.1974C>T
SRR15315457 NC_045512.2 23540 T C 368.0 2701 0.010367 2 1965,707,19,9 MODERATE NONE missense_variant S c.1978T>C
SRR15315457 NC_045512.2 23721 T C 150.0 2513 0.005571 1 686,1810,3,12 MODERATE NONE missense_variant S c.2159T>C
SRR15315457 NC_045512.2 24085 TG T 53.0 623 0.004815 0 436,187,2,1 HIGH NONE frameshift_variant S c.2525delG
SRR15315457 NC_045512.2 24375 T C 74.0 906 0.006623 1 258,642,1,5 MODERATE NONE missense_variant S c.2813T>C
SRR15315457 NC_045512.2 24472 T G 99.0 2070 0.004831 0 1652,406,9,2 MODERATE NONE missense_variant S c.2910T>G
SRR15315457 NC_045512.2 24541 T C 256.0 2689 0.00781 0 1696,969,13,8 LOW NONE synonymous_variant S c.2979T>C
SRR15315457 NC_045512.2 24566 C A 150.0 3403 0.004702 7 1950,1434,14,5 MODERATE NONE missense_variant S c.3004C>A
SRR15315457 NC_045512.2 24642 C T 49314.0 2504 0.961661 4 1,0,830,1671 MODERATE NONE missense_variant S c.3080C>T
SRR15315457 NC_045512.2 24760 TTA T 354.0 4984 0.004414 13 3775,1208,21,1 HIGH NONE frameshift_variant S c.3200_3201delAT
SRR15315457 NC_045512.2 24942 A T 144.0 7858 0.002545 29 2729,5097,2,26 MODERATE NONE missense_variant S c.3380A>T
SRR15315457 NC_045512.2 24971 GT G 718.0 5973 0.006697 2 1154,4920,9,31 HIGH NONE frameshift_variant S c.3412delT
SRR15315457 NC_045512.2 25088 G T 49314.0 4655 0.942213 0 1,0,3312,1340 MODERATE NONE missense_variant S c.3526G>T
SRR15315457 NC_045512.2 25160 C T 565.0 6523 0.007359 4 3260,3209,21,27 MODERATE NONE missense_variant S c.3598C>T
SRR15315457 NC_045512.2 25479 T C 49314.0 5813 0.978841 0 5,4,3003,2798 LOW NONE synonymous_variant ORF3a c.87T>C
SRR15315457 NC_045512.2 25832 T C 83.0 1958 0.005107 11 892,1055,2,9 MODERATE NONE missense_variant ORF3a c.440T>C
SRR15315457 NC_045512.2 25926 T C 70.0 1787 0.003917 1 696,1081,2,5 LOW NONE synonymous_variant ORF3a c.534T>C
SRR15315457 NC_045512.2 25927 AT A 158.0 1776 0.005068 0 704,1072,3,6 HIGH NONE frameshift_variant ORF3a c.538delT
SRR15315457 NC_045512.2 26042 C T 190.0 2029 0.008379 10 1098,912,6,12 MODERATE NONE missense_variant ORF3a c.650C>T
SRR15315457 NC_045512.2 26044 C G 189.0 2013 0.007948 8 1094,898,6,11 MODERATE NONE missense_variant ORF3a c.652C>G
SRR15315457 NC_045512.2 26046 A G 202.0 2012 0.008449 10 1069,921,6,12 LOW NONE synonymous_variant ORF3a c.654A>G
SRR15315457 NC_045512.2 26060 C T 49314.0 1885 0.922546 0 0,0,990,895 MODERATE NONE missense_variant ORF3a c.668C>T
SRR15315457 NC_045512.2 26075 T C 114.0 1754 0.005701 6 926,817,8,3 MODERATE NONE missense_variant ORF3a c.683T>C
SRR15315457 NC_045512.2 26084 T C 66.0 1697 0.004125 2 885,801,4,6 MODERATE NONE missense_variant ORF3a c.692T>C
SRR15315457 NC_045512.2 26102 T C 142.0 1613 0.00744 7 824,773,4,9 MODERATE NONE missense_variant ORF3a c.710T>C
SRR15315457 NC_045512.2 26123 T C 136.0 1645 0.007295 1 880,751,6,6 MODERATE NONE missense_variant ORF3a c.731T>C
SRR15315457 NC_045512.2 26149 T C 49314.0 1864 0.970494 2 1,3,875,984 MODERATE NONE missense_variant ORF3a c.757T>C
SRR15315457 NC_045512.2 26305 CT C 120.0 2847 0.00281 11 1729,1151,2,6 HIGH NONE frameshift_variant E c.63delT
SRR15315457 NC_045512.2 26329 GT G 352.0 2621 0.007249 0 1751,875,12,7 HIGH NONE frameshift_variant E c.87delT
SRR15315457 NC_045512.2 26358 A AT 471.0 3079 0.00812 1 1780,1319,13,12 HIGH NONE frameshift_variant E c.116dupT
SRR15315457 NC_045512.2 26395 C T 182.0 3024 0.005622 14 1426,1566,4,14 MODERATE NONE missense_variant E c.151C>T
SRR15315457 NC_045512.2 26542 C A 225.0 3911 0.005369 11 1828,2056,16,8 MODERATE NONE missense_variant M c.20C>A
SRR15315457 NC_045512.2 26544 A AC 181.0 3975 0.003019 25 1929,2050,11,1 HIGH NONE frameshift_variant M c.22_23insC
SRR15315457 NC_045512.2 26545 T G 226.0 4013 0.005482 9 1948,2041,16,8 MODERATE NONE missense_variant M c.23T>G
SRR15315457 NC_045512.2 26660 GTA G 482.0 4808 0.005824 0 3224,1639,18,10 HIGH NONE frameshift_variant M c.143_144delTA
SRR15315457 NC_045512.2 26696 G A 358.0 5466 0.00622 5 3189,2238,17,17 HIGH NONE stop_gained M c.174G>A
SRR15315457 NC_045512.2 26740 T C 90.0 6799 0.002059 26 3186,3596,1,13 MODERATE NONE missense_variant M c.218T>C
SRR15315457 NC_045512.2 26946 G T 279.0 6520 0.004601 0 4206,2279,23,12 MODERATE NONE missense_variant M c.424G>T
SRR15315457 NC_045512.2 27048 C T 304.0 6145 0.004882 0 2928,3180,17,19 MODERATE NONE missense_variant M c.526C>T
SRR15315457 NC_045512.2 27167 CAAT C 289.0 5674 0.003349 34 2055,3716,0,19 MODERATE NONE disruptive_inframe_deletion M c.647_649delATA
SRR15315457 NC_045512.2 27264 T C 266.0 3509 0.007125 0 2435,1047,18,7 LOW NONE synonymous_variant ORF6 c.63T>C
SRR15315457 NC_045512.2 27335 C T 286.0 4825 0.005596 0 2672,2123,15,13 MODERATE NONE missense_variant ORF6 c.134C>T
SRR15315457 NC_045512.2 27344 A T 261.0 4900 0.005306 4 2479,2391,18,12 MODERATE NONE missense_variant ORF6 c.143A>T
SRR15315457 NC_045512.2 27345 A T 291.0 4911 0.005701 4 2443,2437,18,12 MODERATE NONE missense_variant ORF6 c.144A>T
SRR15315457 NC_045512.2 27346 T C 252.0 4869 0.005545 0 2388,2449,14,13 MODERATE NONE missense_variant ORF6 c.145T>C
SRR15315457 NC_045512.2 27354 A G 514.0 4895 0.008784 26 2211,2638,31,14 LOW NONE synonymous_variant ORF6 c.153A>G
SRR15315457 NC_045512.2 27384 T C 156.0 4586 0.003707 0 1596,2971,6,11 LOW NONE synonymous_variant ORF6 c.183T>C
SRR15315457 NC_045512.2 27390 G T 86.0 4416 0.002491 5 1455,2945,3,13 MODIFIER NONE intergenic_region ORF6-ORF7a n.27390G>T
SRR15315457 NC_045512.2 27396 G A 225.0 4277 0.005144 1 1314,2938,8,15 HIGH NONE start_lost ORF7a c.3G>A
SRR15315457 NC_045512.2 27452 AC A 59.0 3179 0.001573 18 809,2423,4,1 HIGH NONE frameshift_variant ORF7a c.61delC
SRR15315457 NC_045512.2 27465 TAG T 388.0 3202 0.006871 2 660,2590,3,19 HIGH NONE frameshift_variant ORF7a c.75_76delAG
SRR15315457 NC_045512.2 27652 T A 158.0 639 0.015649 35 273,356,10,0 MODERATE NONE missense_variant ORF7a c.259T>A
SRR15315457 NC_045512.2 27791 CT C 71.0 571 0.007005 3 76,499,1,3 HIGH NONE frameshift_variant ORF7b c.41delT
SRR15315457 NC_045512.2 28151 T C 167.0 3571 0.005041 13 3298,253,15,4 LOW NONE synonymous_variant ORF8 c.258T>C
SRR15315457 NC_045512.2 28224 T C 164.0 5655 0.003537 7 3669,1960,17,4 MODERATE NONE missense_variant ORF8 c.331T>C
SRR15315457 NC_045512.2 28262 G GAACA 49314.0 5710 0.700525 312 1155,639,1911,2089 MODIFIER NONE intergenic_region ORF8-N n.28262_28263insAACA
SRR15315457 NC_045512.2 28270 T A 1906.0 6063 0.045027 220 2701,3081,213,66 MODIFIER NONE intergenic_region ORF8-N n.28270T>A
SRR15315457 NC_045512.2 28316 A G 67.0 6990 0.001717 1 2971,4006,6,6 MODERATE NONE missense_variant N c.43A>G
SRR15315457 NC_045512.2 28321 GT G 104.0 7045 0.001278 7 2918,4199,6,3 HIGH NONE frameshift_variant N c.51delT
SRR15315457 NC_045512.2 28372 TG T 132.0 6076 0.00181 5 1769,4404,5,6 HIGH NONE frameshift_variant N c.103delG
SRR15315457 NC_045512.2 28404 GT G 95.0 5921 0.001351 9 1699,4375,0,8 HIGH NONE frameshift_variant N c.134delT
SRR15315457 NC_045512.2 28512 C G 49314.0 4191 0.97089 0 1,0,2736,1451 MODERATE NONE missense_variant N c.239C>G
SRR15315457 NC_045512.2 28522 A G 69.0 4164 0.002402 1 2628,1526,7,3 LOW NONE synonymous_variant N c.249A>G
SRR15315457 NC_045512.2 28551 GA G 179.0 3841 0.003124 0 2266,1630,7,5 HIGH NONE frameshift_variant N c.280delA
SRR15315457 NC_045512.2 28555 T C 80.0 3877 0.002579 0 2232,1635,6,4 LOW NONE synonymous_variant N c.282T>C
SRR15315457 NC_045512.2 28877 A T 2439.0 73 0.945205 0 0,0,40,33 MODERATE NONE missense_variant N c.604A>T
SRR15315457 NC_045512.2 28878 G C 2514.0 70 0.971429 0 0,0,36,33 MODERATE NONE missense_variant N c.605G>C
SRR15315457 NC_045512.2 28881 G A 2255.0 70 0.871429 0 0,0,36,33 MODERATE NONE missense_variant N c.608G>A
SRR15315457 NC_045512.2 28882 G A 2255.0 70 0.871429 0 0,0,36,33 LOW NONE synonymous_variant N c.609G>A
SRR15315457 NC_045512.2 28883 G C 2467.0 74 0.932432 0 0,0,37,36 MODERATE NONE missense_variant N c.610G>C
SRR15315457 NC_045512.2 28985 G T 92.0 196 0.035714 8 77,112,5,2 MODERATE NONE missense_variant N c.712G>T
SRR15315457 NC_045512.2 28987 C G 161.0 814 0.025799 14 610,179,22,1 LOW NONE synonymous_variant N c.714C>G
SRR15315457 NC_045512.2 29029 T C 426.0 2632 0.013298 35 2025,571,35,0 LOW NONE synonymous_variant N c.756T>C
SRR15315457 NC_045512.2 29039 A T 1213.0 3256 0.023342 33 2499,669,75,5 HIGH NONE stop_gained N c.766A>T
SRR15315457 NC_045512.2 29049 G A 1106.0 3810 0.01916 19 2917,813,70,8 MODERATE NONE missense_variant N c.776G>A
SRR15315457 NC_045512.2 29172 A C 92.0 5268 0.002278 26 2851,2392,5,18 MODERATE NONE missense_variant N c.899A>C
SRR15315457 NC_045512.2 29187 C T 82.0 5579 0.002151 14 2797,2766,10,2 MODERATE NONE missense_variant N c.914C>T
SRR15315457 NC_045512.2 29188 A G 78.0 5562 0.002157 14 2774,2773,10,2 LOW NONE synonymous_variant N c.915A>G
SRR15315457 NC_045512.2 29195 GC G 125.0 5565 0.001977 2 2613,3040,4,7 HIGH NONE frameshift_variant N c.927delC
SRR15315457 NC_045512.2 29229 G A 121.0 5684 0.003167 0 2228,3435,6,12 MODERATE NONE missense_variant N c.956G>A
SRR15315457 NC_045512.2 29253 CG C 102.0 4794 0.001669 1 1563,3288,3,5 HIGH NONE frameshift_variant N c.983delG
SRR15315457 NC_045512.2 29386 CA C 93.0 547 0.009141 10 417,130,2,3 HIGH NONE frameshift_variant N c.1118delA
SRR15315457 NC_045512.2 29720 AC A 55.0 2203 0.001816 2 1024,1195,1,3 MODIFIER NONE intergenic_region ORF10-CHR_END n.29721delC
SRR15315457 NC_045512.2 29834 T A 40453.0 1152 0.974826 0 0,1,255,896 MODIFIER NONE intergenic_region ORF10-CHR_END n.29834T>A
SRR15315457 NC_045512.2 29858 T A 9680.0 524 0.59542 295 8,182,164,170 MODIFIER NONE intergenic_region ORF10-CHR_END n.29858T>A
SRR15328723 NC_045512.2 195 T A 142.0 162 0.04321 0 104,51,5,2 MODIFIER NONE intergenic_region CHR_START-ORF1ab n.195T>A
SRR15328723 NC_045512.2 199 G GT 100.0 168 0.02381 2 109,55,2,2 MODIFIER NONE intergenic_region CHR_START-ORF1ab n.199_200insT
SRR15328723 NC_045512.2 199 G A 69.0 168 0.02381 2 109,55,2,2 MODIFIER NONE intergenic_region CHR_START-ORF1ab n.199G>A
SRR15328723 NC_045512.2 241 C T 7195.0 231 0.878788 7 14,6,108,101 MODIFIER NONE intergenic_region CHR_START-ORF1ab n.241C>T
SRR15328723 NC_045512.2 313 CA C 68.0 222 0.013514 0 92,129,1,2 HIGH NONE frameshift_variant ORF1ab c.49delA
SRR15328723 NC_045512.2 313 CA C 68.0 222 0.013514 0 92,129,1,2 HIGH NONE frameshift_variant ORF1ab c.49delA
SRR15328723 NC_045512.2 313 CA C 68.0 222 0.013514 0 92,129,1,2 HIGH NONE frameshift_variant ORF1ab c.49delA
SRR15328723 NC_045512.2 313 CA C 68.0 222 0.013514 0 92,129,1,2 HIGH NONE frameshift_variant ORF1ab c.49delA
SRR15328723 NC_045512.2 323 G GT 47.0 119 0.016807 0 58,63,1,1 HIGH NONE frameshift_variant ORF1ab c.62dupT
SRR15328723 NC_045512.2 323 G GT 47.0 119 0.016807 0 58,63,1,1 HIGH NONE frameshift_variant ORF1ab c.62dupT
SRR15328723 NC_045512.2 323 G GT 47.0 119 0.016807 0 58,63,1,1 HIGH NONE frameshift_variant ORF1ab c.62dupT
SRR15328723 NC_045512.2 323 G GT 47.0 119 0.016807 0 58,63,1,1 HIGH NONE frameshift_variant ORF1ab c.62dupT
SRR15328723 NC_045512.2 443 G GT 46.0 137 0.014599 0 70,65,1,1 HIGH NONE frameshift_variant ORF1ab c.182dupT
SRR15328723 NC_045512.2 443 G GT 46.0 137 0.014599 0 70,65,1,1 HIGH NONE frameshift_variant ORF1ab c.182dupT
SRR15328723 NC_045512.2 443 G GT 46.0 137 0.014599 0 70,65,1,1 HIGH NONE frameshift_variant ORF1ab c.182dupT
SRR15328723 NC_045512.2 443 G GT 46.0 137 0.014599 0 70,65,1,1 HIGH NONE frameshift_variant ORF1ab c.182dupT
SRR15328723 NC_045512.2 478 C CA 50.0 96 0.020833 0 44,52,1,1 HIGH NONE frameshift_variant ORF1ab c.216dupA
SRR15328723 NC_045512.2 478 C CA 50.0 96 0.020833 0 44,52,1,1 HIGH NONE frameshift_variant ORF1ab c.216dupA
SRR15328723 NC_045512.2 478 C CA 50.0 96 0.020833 0 44,52,1,1 HIGH NONE frameshift_variant ORF1ab c.216dupA
SRR15328723 NC_045512.2 478 C CA 50.0 96 0.020833 0 44,52,1,1 HIGH NONE frameshift_variant ORF1ab c.216dupA
SRR15328723 NC_045512.2 493 T TA 50.0 99 0.020202 0 41,56,1,1 HIGH NONE frameshift_variant ORF1ab c.228_229insA
SRR15328723 NC_045512.2 493 T TA 50.0 99 0.020202 0 41,56,1,1 HIGH NONE frameshift_variant ORF1ab c.228_229insA
SRR15328723 NC_045512.2 493 T TA 50.0 99 0.020202 0 41,56,1,1 HIGH NONE frameshift_variant ORF1ab c.228_229insA
SRR15328723 NC_045512.2 493 T TA 50.0 99 0.020202 0 41,56,1,1 HIGH NONE frameshift_variant ORF1ab c.228_229insA
SRR15328723 NC_045512.2 732 A AC 49.0 77 0.025974 0 36,39,1,1 HIGH NONE frameshift_variant ORF1ab c.467_468insC
SRR15328723 NC_045512.2 732 A AC 49.0 77 0.025974 0 36,39,1,1 HIGH NONE frameshift_variant ORF1ab c.467_468insC
SRR15328723 NC_045512.2 732 A AC 49.0 77 0.025974 0 36,39,1,1 HIGH NONE frameshift_variant ORF1ab c.467_468insC
SRR15328723 NC_045512.2 732 A AC 49.0 77 0.025974 0 36,39,1,1 HIGH NONE frameshift_variant ORF1ab c.467_468insC
SRR15328723 NC_045512.2 733 T C 2571.0 77 0.935065 0 2,2,35,38 LOW NONE synonymous_variant ORF1ab c.468T>C
SRR15328723 NC_045512.2 733 T C 2571.0 77 0.935065 0 2,2,35,38 LOW NONE synonymous_variant ORF1ab c.468T>C
SRR15328723 NC_045512.2 733 T C 2571.0 77 0.935065 0 2,2,35,38 LOW NONE synonymous_variant ORF1ab c.468T>C
SRR15328723 NC_045512.2 733 T C 2571.0 77 0.935065 0 2,2,35,38 LOW NONE synonymous_variant ORF1ab c.468T>C
SRR15328723 NC_045512.2 892 T TA 46.0 169 0.011834 0 79,88,1,1 HIGH NONE frameshift_variant ORF1ab c.630dupA
SRR15328723 NC_045512.2 892 T TA 46.0 169 0.011834 0 79,88,1,1 HIGH NONE frameshift_variant ORF1ab c.630dupA
SRR15328723 NC_045512.2 892 T TA 46.0 169 0.011834 0 79,88,1,1 HIGH NONE frameshift_variant ORF1ab c.90dupA
SRR15328723 NC_045512.2 892 T TA 46.0 169 0.011834 0 79,88,1,1 HIGH NONE frameshift_variant ORF1ab c.90dupA
SRR15328723 NC_045512.2 960 G GT 49.0 119 0.016807 0 53,64,1,1 HIGH NONE frameshift_variant&stop_gained ORF1ab c.696dupT
SRR15328723 NC_045512.2 960 G GT 49.0 119 0.016807 0 53,64,1,1 HIGH NONE frameshift_variant&stop_gained ORF1ab c.696dupT
SRR15328723 NC_045512.2 960 G GT 49.0 119 0.016807 0 53,64,1,1 HIGH NONE frameshift_variant&stop_gained ORF1ab c.156dupT
SRR15328723 NC_045512.2 960 G GT 49.0 119 0.016807 0 53,64,1,1 HIGH NONE frameshift_variant&stop_gained ORF1ab c.156dupT
SRR15328723 NC_045512.2 1134 A AG 52.0 72 0.027778 0 34,36,1,1 HIGH NONE frameshift_variant ORF1ab c.870dupG
SRR15328723 NC_045512.2 1134 A AG 52.0 72 0.027778 0 34,36,1,1 HIGH NONE frameshift_variant ORF1ab c.870dupG
SRR15328723 NC_045512.2 1134 A AG 52.0 72 0.027778 0 34,36,1,1 HIGH NONE frameshift_variant ORF1ab c.330dupG
SRR15328723 NC_045512.2 1134 A AG 52.0 72 0.027778 0 34,36,1,1 HIGH NONE frameshift_variant ORF1ab c.330dupG
SRR15328723 NC_045512.2 1191 C CA 53.0 72 0.027778 0 30,41,1,1 HIGH NONE frameshift_variant ORF1ab c.929dupA
SRR15328723 NC_045512.2 1191 C CA 53.0 72 0.027778 0 30,41,1,1 HIGH NONE frameshift_variant ORF1ab c.929dupA
SRR15328723 NC_045512.2 1191 C CA 53.0 72 0.027778 0 30,41,1,1 HIGH NONE frameshift_variant ORF1ab c.389dupA
SRR15328723 NC_045512.2 1191 C CA 53.0 72 0.027778 0 30,41,1,1 HIGH NONE frameshift_variant ORF1ab c.389dupA
SRR15328723 NC_045512.2 1424 T TACC 52.0 84 0.02381 0 50,32,1,1 MODERATE NONE disruptive_inframe_insertion ORF1ab c.1161_1163dupCCA
SRR15328723 NC_045512.2 1424 T TACC 52.0 84 0.02381 0 50,32,1,1 MODERATE NONE disruptive_inframe_insertion ORF1ab c.1161_1163dupCCA
SRR15328723 NC_045512.2 1424 T TACC 52.0 84 0.02381 0 50,32,1,1 MODERATE NONE disruptive_inframe_insertion ORF1ab c.621_623dupCCA
SRR15328723 NC_045512.2 1424 T TACC 52.0 84 0.02381 0 50,32,1,1 MODERATE NONE disruptive_inframe_insertion ORF1ab c.621_623dupCCA
SRR15328723 NC_045512.2 1458 G GT 46.0 159 0.012579 0 89,68,1,1 HIGH NONE frameshift_variant&stop_gained ORF1ab c.1194dupT
SRR15328723 NC_045512.2 1458 G GT 46.0 159 0.012579 0 89,68,1,1 HIGH NONE frameshift_variant&stop_gained ORF1ab c.1194dupT
SRR15328723 NC_045512.2 1458 G GT 46.0 159 0.012579 0 89,68,1,1 HIGH NONE frameshift_variant&stop_gained ORF1ab c.654dupT
SRR15328723 NC_045512.2 1458 G GT 46.0 159 0.012579 0 89,68,1,1 HIGH NONE frameshift_variant&stop_gained ORF1ab c.654dupT
SRR15328723 NC_045512.2 1459 T TA 46.0 159 0.012579 0 89,68,1,1 HIGH NONE frameshift_variant ORF1ab c.1196dupA
SRR15328723 NC_045512.2 1459 T TA 46.0 159 0.012579 0 89,68,1,1 HIGH NONE frameshift_variant ORF1ab c.1196dupA
SRR15328723 NC_045512.2 1459 T TA 46.0 159 0.012579 0 89,68,1,1 HIGH NONE frameshift_variant ORF1ab c.656dupA
SRR15328723 NC_045512.2 1459 T TA 46.0 159 0.012579 0 89,68,1,1 HIGH NONE frameshift_variant ORF1ab c.656dupA
SRR15328723 NC_045512.2 1588 A AG 48.0 123 0.01626 0 42,79,1,1 HIGH NONE frameshift_variant ORF1ab c.1325dupG
SRR15328723 NC_045512.2 1588 A AG 48.0 123 0.01626 0 42,79,1,1 HIGH NONE frameshift_variant ORF1ab c.1325dupG
SRR15328723 NC_045512.2 1588 A AG 48.0 123 0.01626 0 42,79,1,1 HIGH NONE frameshift_variant ORF1ab c.785dupG
SRR15328723 NC_045512.2 1588 A AG 48.0 123 0.01626 0 42,79,1,1 HIGH NONE frameshift_variant ORF1ab c.785dupG
SRR15328723 NC_045512.2 1946 G GT 53.0 54 0.037037 0 29,23,1,1 HIGH NONE frameshift_variant ORF1ab c.1685dupT
SRR15328723 NC_045512.2 1946 G GT 53.0 54 0.037037 0 29,23,1,1 HIGH NONE frameshift_variant ORF1ab c.1685dupT
SRR15328723 NC_045512.2 1946 G GT 53.0 54 0.037037 0 29,23,1,1 HIGH NONE frameshift_variant ORF1ab c.1145dupT
SRR15328723 NC_045512.2 1946 G GT 53.0 54 0.037037 0 29,23,1,1 HIGH NONE frameshift_variant ORF1ab c.1145dupT
SRR15328723 NC_045512.2 1957 G A 1566.0 54 0.833333 1 6,3,24,21 LOW NONE synonymous_variant ORF1ab c.1692G>A
SRR15328723 NC_045512.2 1957 G A 1566.0 54 0.833333 1 6,3,24,21 LOW NONE synonymous_variant ORF1ab c.1692G>A
SRR15328723 NC_045512.2 1957 G A 1566.0 54 0.833333 1 6,3,24,21 LOW NONE synonymous_variant ORF1ab c.1152G>A
SRR15328723 NC_045512.2 1957 G A 1566.0 54 0.833333 1 6,3,24,21 LOW NONE synonymous_variant ORF1ab c.1152G>A
SRR15328723 NC_045512.2 2941 AC A 48.0 77 0.025974 0 41,34,1,1 HIGH NONE frameshift_variant ORF1ab c.2677delC
SRR15328723 NC_045512.2 2941 AC A 48.0 77 0.025974 0 41,34,1,1 HIGH NONE frameshift_variant ORF1ab c.2677delC
SRR15328723 NC_045512.2 2941 AC A 48.0 77 0.025974 0 41,34,1,1 HIGH NONE frameshift_variant ORF1ab c.223delC
SRR15328723 NC_045512.2 2941 AC A 48.0 77 0.025974 0 41,34,1,1 HIGH NONE frameshift_variant ORF1ab c.223delC
SRR15328723 NC_045512.2 4947 C CT 51.0 59 0.033898 0 27,30,1,1 HIGH NONE frameshift_variant ORF1ab c.4685dupT
SRR15328723 NC_045512.2 4947 C CT 51.0 59 0.033898 0 27,30,1,1 HIGH NONE frameshift_variant ORF1ab c.4685dupT
SRR15328723 NC_045512.2 4947 C CT 51.0 59 0.033898 0 27,30,1,1 HIGH NONE frameshift_variant ORF1ab c.2231dupT
SRR15328723 NC_045512.2 4947 C CT 51.0 59 0.033898 0 27,30,1,1 HIGH NONE frameshift_variant ORF1ab c.2231dupT
SRR15328723 NC_045512.2 4950 T TG 54.0 59 0.033898 0 27,30,1,1 HIGH NONE frameshift_variant ORF1ab c.4686dupG
SRR15328723 NC_045512.2 4950 T TG 54.0 59 0.033898 0 27,30,1,1 HIGH NONE frameshift_variant ORF1ab c.4686dupG
SRR15328723 NC_045512.2 4950 T TG 54.0 59 0.033898 0 27,30,1,1 HIGH NONE frameshift_variant ORF1ab c.2232dupG
SRR15328723 NC_045512.2 4950 T TG 54.0 59 0.033898 0 27,30,1,1 HIGH NONE frameshift_variant ORF1ab c.2232dupG
SRR15328723 NC_045512.2 5437 GT G 50.0 96 0.020833 0 49,45,1,1 HIGH NONE frameshift_variant ORF1ab c.5174delT
SRR15328723 NC_045512.2 5437 GT G 50.0 96 0.020833 0 49,45,1,1 HIGH NONE frameshift_variant ORF1ab c.5174delT
SRR15328723 NC_045512.2 5437 GT G 50.0 96 0.020833 0 49,45,1,1 HIGH NONE frameshift_variant ORF1ab c.2720delT
SRR15328723 NC_045512.2 5437 GT G 50.0 96 0.020833 0 49,45,1,1 HIGH NONE frameshift_variant ORF1ab c.2720delT
SRR15328723 NC_045512.2 5453 G GA 50.0 97 0.020619 0 49,46,1,1 HIGH NONE frameshift_variant ORF1ab c.5191dupA
SRR15328723 NC_045512.2 5453 G GA 50.0 97 0.020619 0 49,46,1,1 HIGH NONE frameshift_variant ORF1ab c.5191dupA
SRR15328723 NC_045512.2 5453 G GA 50.0 97 0.020619 0 49,46,1,1 HIGH NONE frameshift_variant ORF1ab c.2737dupA
SRR15328723 NC_045512.2 5453 G GA 50.0 97 0.020619 0 49,46,1,1 HIGH NONE frameshift_variant ORF1ab c.2737dupA
SRR15328723 NC_045512.2 5513 G GT 51.0 90 0.022222 0 42,46,1,1 HIGH NONE frameshift_variant ORF1ab c.5249dupT
SRR15328723 NC_045512.2 5513 G GT 51.0 90 0.022222 0 42,46,1,1 HIGH NONE frameshift_variant ORF1ab c.5249dupT
SRR15328723 NC_045512.2 5513 G GT 51.0 90 0.022222 0 42,46,1,1 HIGH NONE frameshift_variant ORF1ab c.2795dupT
SRR15328723 NC_045512.2 5513 G GT 51.0 90 0.022222 0 42,46,1,1 HIGH NONE frameshift_variant ORF1ab c.2795dupT
SRR15328723 NC_045512.2 5521 T TA 50.0 47 0.042553 0 37,40,1,1 HIGH NONE frameshift_variant ORF1ab c.5260dupA
SRR15328723 NC_045512.2 5521 T TA 50.0 47 0.042553 0 37,40,1,1 HIGH NONE frameshift_variant ORF1ab c.5260dupA
SRR15328723 NC_045512.2 5521 T TA 50.0 47 0.042553 0 37,40,1,1 HIGH NONE frameshift_variant ORF1ab c.2806dupA
SRR15328723 NC_045512.2 5521 T TA 50.0 47 0.042553 0 37,40,1,1 HIGH NONE frameshift_variant ORF1ab c.2806dupA
SRR15328723 NC_045512.2 6319 A G 1471.0 62 0.709677 7 7,11,27,17 LOW NONE synonymous_variant ORF1ab c.6054A>G
SRR15328723 NC_045512.2 6319 A G 1471.0 62 0.709677 7 7,11,27,17 LOW NONE synonymous_variant ORF1ab c.6054A>G
SRR15328723 NC_045512.2 6319 A G 1471.0 62 0.709677 7 7,11,27,17 LOW NONE synonymous_variant ORF1ab c.3600A>G
SRR15328723 NC_045512.2 6319 A G 1471.0 62 0.709677 7 7,11,27,17 LOW NONE synonymous_variant ORF1ab c.3600A>G
SRR15328723 NC_045512.2 6383 G A 1527.0 51 0.843137 6 4,2,17,28 MODERATE NONE missense_variant ORF1ab c.6118G>A
SRR15328723 NC_045512.2 6383 G A 1527.0 51 0.843137 6 4,2,17,28 MODERATE NONE missense_variant ORF1ab c.6118G>A
SRR15328723 NC_045512.2 6383 G A 1527.0 51 0.843137 6 4,2,17,28 MODERATE NONE missense_variant ORF1ab c.3664G>A
SRR15328723 NC_045512.2 6383 G A 1527.0 51 0.843137 6 4,2,17,28 MODERATE NONE missense_variant ORF1ab c.3664G>A
SRR15328723 NC_045512.2 7500 G GT 52.0 78 0.025641 0 42,34,1,1 HIGH NONE frameshift_variant ORF1ab c.7237dupT
SRR15328723 NC_045512.2 7500 G GT 52.0 78 0.025641 0 42,34,1,1 HIGH NONE frameshift_variant ORF1ab c.7237dupT
SRR15328723 NC_045512.2 7500 G GT 52.0 78 0.025641 0 42,34,1,1 HIGH NONE frameshift_variant ORF1ab c.4783dupT
SRR15328723 NC_045512.2 7500 G GT 52.0 78 0.025641 0 42,34,1,1 HIGH NONE frameshift_variant ORF1ab c.4783dupT
SRR15328723 NC_045512.2 7688 C T 709.0 51 0.45098 16 5,21,13,12 LOW NONE synonymous_variant ORF1ab c.7423C>T
SRR15328723 NC_045512.2 7688 C T 709.0 51 0.45098 16 5,21,13,12 LOW NONE synonymous_variant ORF1ab c.7423C>T
SRR15328723 NC_045512.2 7688 C T 709.0 51 0.45098 16 5,21,13,12 LOW NONE synonymous_variant ORF1ab c.4969C>T
SRR15328723 NC_045512.2 7688 C T 709.0 51 0.45098 16 5,21,13,12 LOW NONE synonymous_variant ORF1ab c.4969C>T
SRR15328723 NC_045512.2 8185 G GT 56.0 51 0.039216 0 25,24,1,1 HIGH NONE frameshift_variant ORF1ab c.7923dupT
SRR15328723 NC_045512.2 8185 G GT 56.0 51 0.039216 0 25,24,1,1 HIGH NONE frameshift_variant ORF1ab c.7923dupT
SRR15328723 NC_045512.2 8185 G GT 56.0 51 0.039216 0 25,24,1,1 HIGH NONE frameshift_variant ORF1ab c.5469dupT
SRR15328723 NC_045512.2 8185 G GT 56.0 51 0.039216 0 25,24,1,1 HIGH NONE frameshift_variant ORF1ab c.5469dupT
SRR15328723 NC_045512.2 8317 A AC 52.0 68 0.029412 0 39,27,1,1 HIGH NONE frameshift_variant ORF1ab c.8056dupC
SRR15328723 NC_045512.2 8317 A AC 52.0 68 0.029412 0 39,27,1,1 HIGH NONE frameshift_variant ORF1ab c.8056dupC
SRR15328723 NC_045512.2 8317 A AC 52.0 68 0.029412 0 39,27,1,1 HIGH NONE frameshift_variant ORF1ab c.5602dupC