diff-biophys/mkdocs.yml at main · elkins-lab/diff-biophys · GitHub

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site_name: DiffBiophys
site_url: https://elkins-lab.github.io/diff-biophys/
site_description: Differentiable biophysical modeling in JAX
site_author: George Elkins

theme:
  name: material
  palette:
    scheme: slate
    primary: teal
    accent: cyan
  features:
    - navigation.tabs
    - navigation.sections
    - navigation.expand
    - content.code.copy
    - content.code.annotate

nav:
  - Home: index.md
  - Concepts & Context: concepts.md
  - Use Cases: use_cases.md
  - Core Theory: theory.md
  - API Reference:
      - Geometry: api/geometry.md
      - SAXS: api/saxs.md
      - NMR: api/nmr.md
      - CD & Cryo-EM: api/cd_and_cryoem.md
  - Tutorials:
      - 01 · Hello, Gradient Descent!: https://colab.research.google.com/github/elkins-lab/diff-biophys/blob/main/examples/interactive_tutorials/01_hello_gradient_descent.ipynb
      - 02 · NMR Fundamentals: https://colab.research.google.com/github/elkins-lab/diff-biophys/blob/main/examples/interactive_tutorials/02_nmr_fundamentals.ipynb
      - 03 · CD Spectroscopy: https://colab.research.google.com/github/elkins-lab/diff-biophys/blob/main/examples/interactive_tutorials/03_cd_spectroscopy.ipynb
  - Examples:
      - Refinement Lab: examples/refinement.md

markdown_extensions:
  - pymdownx.highlight:
      anchor_linenums: true
  - pymdownx.inlinehilite
  - pymdownx.snippets
  - pymdownx.superfences
  - pymdownx.arithmatex:
      generic: true
  - admonition
  - pymdownx.details

plugins:
  - search
  - mkdocstrings

extra_javascript:
  - https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js