Outdated test.fasta file

[ealekseev]

Hi!

I've built DeepCrystal with newer Keras and it looks like Keras >=2.2.0 cant use attached test.fasta file for testing.
https://github.com/keras-team/keras/releases/tag/2.2.0
Remove legacy Merge layers and associated functionality (remnant of Keras 0), which were deprecated in May 2016, with full removal initially scheduled for August 2017. Models from the Keras 0 API using these layers cannot be loaded with Keras 2.2.0 and above.
Is it possible to update test.fasta for compatibility with newer Keras?

[elbasir]

Hi,
test.fasta file doesn't need to be updated. First, you need to read the file, convert protein sequences to one-hot encoded arrays. These arrays would be your input to the model.